BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (910 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
 gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1]
          Length = 912

 Score = 1021 bits (2640), Expect = 0.0,   Method: Composition-based stats.
 Identities = 570/911 (62%), Positives = 712/911 (78%), Gaps = 5/911 (0%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     S       I  VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MADQDSSVSGGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDP AA RYTECRLQK AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG 
Sbjct: 121 VDGDPAAAMRYTECRLQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D  +A+++NP + L+ L+EII GPDFPTG +ILGR+GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIILGRSGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+V+RG   +E+    RE ++V+EIPYQVNKA M+EKIAELVREKRI  I+D+
Sbjct: 241 AYETGRGSVVMRGKVEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELK+ A ADVILNQLYR+++LQ+ F  NMVALNG +PE+  L  +LK
Sbjct: 301 RDESDRLGMRVVIELKKDAVADVILNQLYRFSALQTSFGCNMVALNGGRPEQMLLSDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEV+ RRT++LL KARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LMQ
Sbjct: 361 AFIAFREEVIGRRTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQ 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R+W A D+  LI LIDD  +T+  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN 
Sbjct: 421 RNWPAMDVAPLILLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           LG EI + L+IL SR R+  II++ELL +++E  TPR+T IVEG  D+EDED I REDMV
Sbjct: 481 LGEEIADYLEILRSRPRIQQIIREELLEIRNEFATPRKTEIVEGGADLEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+G P +RGKAL+N+L L  GE+I++IMP PE+E SW +L V+FAT  G VRR
Sbjct: 601 KMKVWRLPLGGPTSRGKALVNLLPLEAGEQISSIMPLPENEDSWADLDVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF Q+NR+GKIAMKLD  D I+ V TCT+ +D+LLTT  GQC+RFP++ +RVFAGR
Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEGDGIIGVYTCTENDDVLLTTAAGQCIRFPVTDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI+LA+ D +ISM+I+ H +AD +ER+ Y+K     R     +   +     ++
Sbjct: 721 NSVGVRGINLAEDDHLISMSILRHFEADAEERVTYLKRRRLMRG--ETEDAGVEDEAEEA 778

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             EG++S ER  E+   EQ ILTVSE G+GKRTSS+++R++ R GKGI A  V++ N  G
Sbjct: 779 GAEGHLSLERYAEMSAAEQIILTVSENGYGKRTSSFEYRVTGRGGKGITAMAVTRRN--G 836

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D+DQI+LV+D G LIR PV+ IR+A RAT+GV++F+TA+DE+VV+VER+ E
Sbjct: 837 PLVAAFPVEDSDQIMLVTDGGQLIRCPVDGIRVAGRATQGVIVFNTAEDEKVVAVERVSE 896

Query: 900 SEIVDEAESTE 910
            E  D    +E
Sbjct: 897 DEDGDTGAESE 907


>gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
 gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4]
          Length = 925

 Score = 1018 bits (2631), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/911 (60%), Positives = 701/911 (76%), Gaps = 7/911 (0%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+    +        I  +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MTDQENSTPPGGVPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGS
Sbjct: 61  MNENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTECRL+K AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D  +AV+ NP + +  LM+I+ GPDFPTG +ILGR+GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIILGRSGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGS+V+R    +E+   DR  ++V+EIPYQVNK++M+EKIAE VR+KRI  I+D+
Sbjct: 241 AYESGRGSVVMRSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELKR A  DV+LNQLYRY+ LQ+ F  NMVALNG KPE+  L  ILK
Sbjct: 301 RDESDRSGMRVVIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGKPEQLNLPDILK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF++FREEVV RRTK+LL KARDRAH+LVGL IAVAN+DEV+ +IR +P+P TAR +LM+
Sbjct: 361 AFISFREEVVQRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ LI LIDD  + +  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RDWPARDVEPLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDIL SR+R+  I++ E+L +K+E  TPR+T IV+G  D +DED I REDMV
Sbjct: 481 IGAEISDFLDILRSRARIQDIVRGEMLEIKEEFATPRKTEIVDGGADFDDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  Y
Sbjct: 541 VTVSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+G P +RGKALIN+L L QGE+I++IMP PEDE SW NL V+F+T  G VRR
Sbjct: 601 KMKVWRLPLGGPISRGKALINMLPLEQGEQISSIMPLPEDEESWANLDVMFSTVRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF QINR+GKIAMKL+  D I++V TC++ +D++LTT  GQC+RFP+  +RVFAGR
Sbjct: 661 NKLSDFTQINRNGKIAMKLEDGDGIVNVATCSEHDDVMLTTAAGQCIRFPVGDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI LA GD+VISM I+ H DA+ +ER  ++K   A R    G+ +E        
Sbjct: 721 NSVGVRGIRLADGDKVISMQILHHMDAEAEERTAFLKMSRALR----GEADENAGSDETG 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V+  +S+ER  E+   EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V++ N  G
Sbjct: 777 AVDAGLSQERYAEMSAAEQIILTLSENGYGKRTSSFEYRVTGRGGKGITAMAVTERN--G 834

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV+ FPV ++DQI+LV++ G LIR PV+ IRIA RAT+GV++F TA  E VV+VE I E
Sbjct: 835 GLVSSFPVEESDQIMLVTNGGQLIRCPVDGIRIAGRATQGVIVFKTADGENVVAVEGISE 894

Query: 900 SEIVDEAESTE 910
            +  ++ ++ E
Sbjct: 895 VDDEEDVDAVE 905



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 94/298 (31%), Gaps = 56/298 (18%)

Query: 528 EDEDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                   E+    +     +  G V+R  LS +    R GK    + + D D + ++  
Sbjct: 633 SIMPLPEDEESWANLDVMFSTVRGTVRRNKLSDFTQINRNGKI--AMKLEDGDGIVNVAT 690

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            S H  V+  ++ G   +  V  +       R    +  + L  G+++ ++      ++ 
Sbjct: 691 CSEHDDVMLTTAAGQCIRFPVGDVR--VFAGRNSVGVRGIRLADGDKVISMQILHHMDAE 748

Query: 643 WNNLY-------------------------------------------VVFATKHGNVRR 659
                                                           ++  +++G  +R
Sbjct: 749 AEERTAFLKMSRALRGEADENAGSDETGAVDAGLSQERYAEMSAAEQIILTLSENGYGKR 808

Query: 660 NKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
               ++    R   G  AM +      ++S     + + I+L T  GQ +R P+  IR  
Sbjct: 809 TSSFEYRVTGRGGKGITAMAVTERNGGLVSSFPVEESDQIMLVTNGGQLIRCPVDGIR-I 867

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           AGR + GV     A G+ V+++  +   D + D                     +  S
Sbjct: 868 AGRATQGVIVFKTADGENVVAVEGISEVDDEEDVDAVEDGGEGGDSAAPDAAPSDGES 925


>gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
 gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614]
          Length = 938

 Score = 1013 bits (2619), Expect = 0.0,   Method: Composition-based stats.
 Identities = 549/905 (60%), Positives = 692/905 (76%), Gaps = 5/905 (0%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              +  +     I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + 
Sbjct: 8   DNSTPTDGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHEN 67

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGD
Sbjct: 68  GYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGD 127

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           P AA RYTECRL+K AH LLDD+ K+TVDF+ NYD S  EPVVL A++PN+LVNG GGIA
Sbjct: 128 PAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIA 187

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+D  +AV++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY T
Sbjct: 188 VGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMILGRSGIRSAYET 247

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            RGSIV+R    +E+   DR  ++VTEIPYQVNK+ M+EKIAELVR+KRI  I+D+RDES
Sbjct: 248 ARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRDES 307

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIELKR A  DVILNQLYR++ LQ+ F  N+VALNG KPE+  L  +L+AFV+
Sbjct: 308 DRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALNGGKPEQMNLSDMLRAFVS 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FREEV+ RRT+YLL KARDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W 
Sbjct: 368 FREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMERNWP 427

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           A D++ LI LIDD  + +  DGT  LSE Q RAIL+LRL RLT +GRD+I  ELN +G E
Sbjct: 428 AKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAE 487

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + L+IL SR+R+  I++ E+L +K E  TPRRT I+EG  D ++ED I REDMVVTVS
Sbjct: 488 ISDYLEILRSRARIQEIVRNEMLEIKQEFATPRRTEIIEGGPDFDEEDLIQREDMVVTVS 547

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KV
Sbjct: 548 HGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKV 607

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           WRLP+G P +RGKALIN+L L QGE+IT+I+P PEDE SW NL V+FAT  G +RRNKLS
Sbjct: 608 WRLPLGGPTSRGKALINLLPLEQGEQITSILPLPEDEDSWANLDVMFATIRGTIRRNKLS 667

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF+ INR+GKIAMKL+  D I+ V+TC++ +D++LTT  GQC+RFP++ +RVFAGRNSVG
Sbjct: 668 DFVNINRNGKIAMKLEDGDGIVGVDTCSEHDDVMLTTNFGQCIRFPVTDVRVFAGRNSVG 727

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA  D+VISM I+ H D   +ER  Y+K   A R       E       +  V G
Sbjct: 728 VRGIRLADEDRVISMQILHHIDVSAEERAAYLKLSRAMRGEA---DENGNGADEEGVVAG 784

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           ++ +ER  ++   EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V+  N  G L++
Sbjct: 785 DLPQERYAQMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRN--GGLIS 842

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            FPV D+ QI+LV+D G LIR PV+ IRIA RAT+GV++F TA DE+VV+VE I E +  
Sbjct: 843 SFPVEDSHQIMLVTDGGQLIRCPVDGIRIAGRATQGVIVFKTAADEKVVAVEGISEVDED 902

Query: 904 DEAES 908
           D  E 
Sbjct: 903 DVLED 907



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 84/256 (32%), Gaps = 12/256 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D     D V+  ++ G   R P++  R    G        +R  D    + +   H   +
Sbjct: 692 DTCSEHDDVMLTTNFGQCIRFPVTDVR-VFAGRNSVGVRGIRLADEDRVISMQILHHIDV 750

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                    K              G     +++ +  +     M   E         ++ 
Sbjct: 751 SAEERAAYLKLSRAMRGEADENGNGADEEGVVAGDLPQERYAQMSAAEQI-------ILT 803

Query: 651 ATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R    ++    R   G  AM ++S    ++S       + I+L T  GQ +R
Sbjct: 804 ISENGYGKRTSSFEYRVTGRGGKGITAMAVNSRNGGLISSFPVEDSHQIMLVTDGGQLIR 863

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  IR  AGR + GV     A  ++V+++  +   D D                    
Sbjct: 864 CPVDGIR-IAGRATQGVIVFKTAADEKVVAVEGISEVDEDDVLEDGLEGEAEGSAEPGVS 922

Query: 768 DTEEITSLKNDSSVEG 783
           D    T   +++  E 
Sbjct: 923 DAGNDTIDGDETPPEA 938


>gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419]
 gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419]
          Length = 931

 Score = 1013 bits (2619), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/909 (69%), Positives = 757/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDACIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL SV+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRAVTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS+KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699
             +++  +K G  +R+   DF    R           K     E+++       + I+L 
Sbjct: 798 EQFILTVSKKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   D D +      + + 
Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERISEPDGDEEIEAVGAEGVM 916

Query: 760 AQRRLISGDTEEITS 774
           AQ  L    T     
Sbjct: 917 AQPELPPEPTSTPEE 931


>gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
 gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11]
          Length = 940

 Score = 1013 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/895 (61%), Positives = 690/895 (77%), Gaps = 5/895 (0%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              +        I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + 
Sbjct: 9   DNSTPSGGLPSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHEN 68

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQ++SLRL LI+GQGNFGSVDGD
Sbjct: 69  GYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGD 128

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           P AA RYTECRL+K AH LLDD+ KDTVDF+ NYD S  EPVVL A++PN+LVNG GGIA
Sbjct: 129 PAAAMRYTECRLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIA 188

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+D  +A+++NP + L+ LM+I+ GPDFPTG +ILGR+GI++AY T
Sbjct: 189 VGMATNIPPHNLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMILGRSGIRSAYET 248

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R     E+   DR  ++VTEIPYQVNK+ M+EKIAE+VR+KR+  I+D+RDES
Sbjct: 249 GRGSVPMRAKVDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRDES 308

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIELKR A  DV+LNQLYR++ LQ+ F  NMVALNG KPE+  L  +LKAFVA
Sbjct: 309 DRSGMRVVIELKRDAVPDVVLNQLYRFSQLQTSFGANMVALNGGKPEQMNLSDMLKAFVA 368

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FREEV+ RRT+YLL K RDRAH+LVGL IAVAN+DEV+++IR +P+P TAR +LM+R+W 
Sbjct: 369 FREEVIQRRTRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMERNWP 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           A D++DLI LIDD  + +  DGT  LSE Q RAIL+LRL RLT +GRD+I  ELN +G E
Sbjct: 429 ARDVEDLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKIGAE 488

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I + LDIL SR+R+  I++ E+L +++E  TPRRT I+EG  D ++ED I REDMVVTVS
Sbjct: 489 ISDYLDILRSRARIQEIVRNEMLEIREEFATPRRTEIIEGGADFDEEDLIQREDMVVTVS 548

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  YK KV
Sbjct: 549 HGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKMKV 608

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           WRLP+G P +RGKAL+N+L L QGE+IT+I+P PEDE +W NL V+FAT  G VRRNKLS
Sbjct: 609 WRLPLGGPTSRGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVMFATVRGTVRRNKLS 668

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF+ INR+GKIAMKL+  D I+ V+TC++ +DI+LTT  GQC+RFP + +RVFAGRNSVG
Sbjct: 669 DFVNINRNGKIAMKLEEGDGIVGVDTCSEHSDIMLTTNSGQCIRFPATDVRVFAGRNSVG 728

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI LA GD++ISM I+ H D D +ER  Y+K   A R       E   +   D  V G
Sbjct: 729 VRGIRLADGDRIISMQILHHIDVDAEERAAYLKLSRAMRGEA---DENGAAADEDGVVAG 785

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +S+ER  E+   EQ ILT+SE G+GKRTSS+++R++ R GKGI A  V+  N  G L+A
Sbjct: 786 ELSQERYAEMSAAEQIILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRN--GGLIA 843

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            FPV D+DQI+LV+D G LIR PV  IRIA RAT+GV+IF TA+DE+VV+VE I 
Sbjct: 844 SFPVEDSDQIMLVTDGGQLIRCPVEGIRIAGRATQGVIIFKTAEDEKVVAVEGIS 898



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQ 704
           ++  +++G  +R    ++    R   G  AM ++ R+  L      ++ + I+L T  GQ
Sbjct: 802 ILTISENGYGKRTSSFEYRVTGRGGKGITAMAVNHRNGGLIASFPVEDSDQIMLVTDGGQ 861

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R P+  IR  AGR + GV     A+ ++V+++  +   D D +     +         
Sbjct: 862 LIRCPVEGIR-IAGRATQGVIIFKTAEDEKVVAVEGISEVDEDEELVEGELPEGGGADGD 920

Query: 765 ISGDTEEITSLKNDSSVEGN 784
                       + SS    
Sbjct: 921 AGSGEGGDGEAPDSSSGSDE 940


>gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
 gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 927

 Score = 1013 bits (2618), Expect = 0.0,   Method: Composition-based stats.
 Identities = 630/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKTPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A+ID+P I+L  LM+I+ GPDFPTGA+ILGR GI+ A
Sbjct: 181 GIAVGMATNIPPHNLSEVINGCIALIDDPAIELPELMQIVPGPDFPTGALILGRAGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVAFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ L+ILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D++LTT +GQC+RFP+S +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEFDDVVLTTAVGQCIRFPVSDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAI+ H +A+  ER  Y+K  +A+RR  +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAILAHIEAEPWERAAYLKRSAAERRATTGEDEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G +S ER +ELK +EQF+LT+SE+GFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 ANGGELSNERYEELKAREQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV  NDQI+LVSD G LIRVPV+ IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVEHNDQIMLVSDGGQLIRVPVDGIRLASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAES 908
            +  DE E 
Sbjct: 901 PDGEDEIEE 909



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF    R           K     E+++       + I+L 
Sbjct: 798 EQFVLTLSERGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPVEHNDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   D + +         +
Sbjct: 858 SDGGQLIRVPVDGIR-LASRATKGVTIFSTAKDEKVVSVERISEPDGEDEIEEIVTAGEA 916

Query: 760 AQRRLISGDTE 770
                 +   E
Sbjct: 917 IAAEPPADAEE 927


>gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021]
 gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021]
          Length = 931

 Score = 1012 bits (2615), Expect = 0.0,   Method: Composition-based stats.
 Identities = 633/909 (69%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699
             +++  +  G  +R+   DF    R           K     E+++       + I+L 
Sbjct: 798 EQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   D D +      + + 
Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVM 916

Query: 760 AQRRLISGDTEEITS 774
           A+       T     
Sbjct: 917 AEPESPPDTTSTPDE 931


>gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
 gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C]
          Length = 931

 Score = 1011 bits (2614), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699
             +++  +  G  +R+   DF    R           K     E+++       + I+L 
Sbjct: 798 EQFILTVSMKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   D D +      + + 
Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVM 916

Query: 760 AQRRLISGDTEEITS 774
           A+       T     
Sbjct: 917 AEPESPPDTTSTPDE 931


>gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
 gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup]
          Length = 927

 Score = 1011 bits (2613), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/913 (64%), Positives = 717/913 (78%), Gaps = 3/913 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTPHPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILG +G++ A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIILGLSGVRAA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVEIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELK+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAMDVAPLIKLIDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LDIL+SR R++ I+K EL ++++E  TPRRT    G  +ME ED I  EDMVV
Sbjct: 481 GVDIADYLDILASRVRIMCIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRN
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVDVRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD---TEEITSLKN 777
           SVGVRGI+LAKGD+VISM I+ H +A   ER  Y+K +  +RR    D    + +T  + 
Sbjct: 721 SVGVRGINLAKGDKVISMTILEHVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEE 780

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D   E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  E
Sbjct: 781 DGGAETELTDERYAELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAE 840

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV   DQI+LVSD G LIRVPV  IR A R+TKGV IF+TAK ERVVSVERI
Sbjct: 841 IGKLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAKGERVVSVERI 900

Query: 898 RESEIVDEAESTE 910
            E E    +   E
Sbjct: 901 SEPEDDTSSLDDE 913



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 9/246 (3%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E C   +D+V+T +  G   R P+   R     G+   GV   +      +  ++   
Sbjct: 686 SVETCTEHDDVVLT-TANGQCIRFPVVDVRV--FAGRNSVGVRGINLAKGDKVISMTILE 742

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V   S     Y ++V               I  L    G   T +      E       
Sbjct: 743 HVEATSIERSAYIKRVMNERRAFGADADVEDIVTLDEEDGGAETELTDERYAELHAREQM 802

Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702
           ++  ++ G  +R+   +F         I      K     ++++      ++ I+L +  
Sbjct: 803 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDG 862

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + AKG++V+S+  +   + D        +  S   
Sbjct: 863 GQLIRVPVEGIRT-AGRSTKGVTIFNTAKGERVVSVERISEPEDDTSSLDDEGEKHSDTV 921

Query: 763 RLISGD 768
            +    
Sbjct: 922 DMSEEK 927


>gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 913

 Score = 1010 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/912 (60%), Positives = 694/912 (76%), Gaps = 8/912 (0%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDKDDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR+GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIILGRSGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+D
Sbjct: 241 SAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I +EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + L+IL SR+R+  I+K EL +VK E  TPR+T IVE   ++EDED I REDM
Sbjct: 481 KLAVEIADYLEILRSRARVQTIVKDELGAVKAEFATPRKTVIVEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+L+ GD+VIS++I+ H +A   ER  Y+K   A RR  +G+  E       
Sbjct: 721 RTSMGVRGIALSSGDKVISLSILRHFEATPAERSTYLKQSGAIRRAATGEESEPIETPEV 780

Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+ 
Sbjct: 781 EAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNG 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSV
Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898

Query: 895 ERIRESEIVDEA 906
           ERI E++  D  
Sbjct: 899 ERIPETDDGDNG 910


>gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
 gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83]
          Length = 931

 Score = 1010 bits (2610), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/909 (69%), Positives = 755/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQSTPGGGKNPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQDWSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+ILGR+GI+ A
Sbjct: 181 GIAVGMATNIPPHNLVEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALILGRSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG +HIE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRAHIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LIDD  + I  D T  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAHDVDALIRLIDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R++ I+K EL +V+DE  TPRRT I EG  DM+DED I +EDMVV
Sbjct: 481 GEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE++W NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSV+TCT+ +D++LTT LGQC+RFP++ +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVDTCTEFDDVVLTTALGQCIRFPVADVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL  GD++ISMAIV H +A+  ER  Y+K  +A+RR ++G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLGDGDRIISMAIVAHVEAEPWERAAYLKRSAAERRALTGEEEEIVLVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +  G ++ ER +ELK +EQFILTVS KGFGKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 TNGGELTNERYEELKAREQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FP+  NDQI+LVSD G LIRVPV  IR+ASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPIEHNDQIMLVSDGGQLIRVPVEGIRLASRATKGVTIFSTAKDEKVVSVERITE 900

Query: 900 SEIVDEAES 908
            +  +E E+
Sbjct: 901 PDGDEEIEA 909



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699
             +++  +  G  +R+   DF    R           K     E+++       + I+L 
Sbjct: 798 EQFILTVSVKGFGKRSSSYDFRTSGRGGKGIRATDTSKTAEIGELVAAFPIEHNDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   D D +      + + 
Sbjct: 858 SDGGQLIRVPVEGIR-LASRATKGVTIFSTAKDEKVVSVERITEPDGDEEIEAVGAEGVM 916

Query: 760 AQRRLISGDTEEITS 774
           A+  L +  T     
Sbjct: 917 AEPELPTDTTSTPDE 931


>gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1]
 gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1]
          Length = 931

 Score = 1009 bits (2609), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/911 (64%), Positives = 719/911 (78%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLNPHPERDVMAGIEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C+A+IDNPDI LD ++EII GPDFPTG +ILG +G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIILGHSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+T   R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR   ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I +D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWPAADVAPLIKLIDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SRSR++ IIK EL  +++   TPRRT    G  +M+ ED I  EDMVV
Sbjct: 481 GVDITDYLHILASRSRIMSIIKDELNVLREAFATPRRTVFGFGSAEMDCEDLIAPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G VYK
Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+ W+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLGTPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+QINR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRN
Sbjct: 661 KLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVLTTAKGQCIRFPVVEVRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDS 779
           SVGVRGI+LA  D+VISM I+ H +A   ER  Y+K +  +RR    D E+ +T  + D 
Sbjct: 721 SVGVRGINLANDDKVISMTILEHVEATSVERSAYIKRVINERRAAGSDAEDLVTLDEEDE 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V+  ++E R  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG
Sbjct: 781 AVDTELTEGRYLELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVPV  IRIA R+TKGV IF+TA+ E+VVSVERI E
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPVEGIRIAGRSTKGVTIFNTAEGEKVVSVERISE 900

Query: 900 SEIVDEAESTE 910
           SE  D     E
Sbjct: 901 SEDDDNQLDDE 911


>gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 913

 Score = 1008 bits (2606), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/912 (60%), Positives = 688/912 (75%), Gaps = 8/912 (0%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++         +    I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK+Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I D
Sbjct: 241 AAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + L+IL SR+R+  I+K EL  VK E  TPRRT I E   ++EDED I REDM
Sbjct: 481 KLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+L+ GD VIS++I+ H +A   ER  Y+K   A RR  +G+  E       
Sbjct: 721 RTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEA 780

Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+ 
Sbjct: 781 EAEEGDASAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNS 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSV
Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898

Query: 895 ERIRESEIVDEA 906
           ERI E++  +  
Sbjct: 899 ERIPETDDGENG 910


>gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/912 (60%), Positives = 688/912 (75%), Gaps = 8/912 (0%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++         +    I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDKDDEKPEGPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK+Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKQYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L +I+ GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I D
Sbjct: 241 AAYQTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  +V+LNQLY++T LQ+ F  NMVAL G +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + L+IL SR+R+  I+K EL  VK E  TPRRT I E   ++EDED I REDM
Sbjct: 481 KLAVEIADYLEILRSRARVQAIVKTELGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+  P  RGKALINIL L QGERITTIMP PEDE+SW+ L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPLAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF+G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+L+ GD VIS++I+ H +A   ER  Y+K   A RR  +G+  E       
Sbjct: 721 RTSMGVRGIALSSGDTVISLSILRHFEATPAERSTYLKQSGAIRRAATGEENEPVETPEA 780

Query: 779 SSVEGN----ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + EG+    +S+ER  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A  V+ 
Sbjct: 781 EAEEGDTSAALSQERYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNS 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F+TA DE+VVSV
Sbjct: 841 RN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSV 898

Query: 895 ERIRESEIVDEA 906
           ERI E++  +  
Sbjct: 899 ERIPETDDGENG 910


>gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 935

 Score = 1008 bits (2605), Expect = 0.0,   Method: Composition-based stats.
 Identities = 597/915 (65%), Positives = 732/915 (80%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  L++
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K +  +L D+ KDTVDF+ NYDG  QEPVV+ AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LMEII GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+GI +AY TGRGS+V+RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRSGINSAYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IEGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L+ +L+AFV FREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 NLLDMLRAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A+D+  LI LIDD  +TI  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA GD+VISMAI+ H DAD  ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLADGDKVISMAILHHVDADAAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  +   E  ++EER QELK +EQ +LTVSE G+GKR+SSY+FR+S R GKGIRAT
Sbjct: 781 DIVVVGEEVGNETELNEERYQELKAREQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVESSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI E++  +E
Sbjct: 901 VVSVERISETDSDEE 915



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEI---LSVETCTQENDILLT 699
              V+  +++G  +R+   +F    R   G  A      DEI   +++      + ILL 
Sbjct: 807 EQTVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVESSDQILLV 866

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  AGR++ GV   + A G++V+S+  +   D+D +          
Sbjct: 867 SDGGQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISETDSDEENGGEGDASPE 925

Query: 760 AQRRLISGDT 769
            +      + 
Sbjct: 926 GEAPAAGSEE 935


>gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 934

 Score = 1007 bits (2604), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE  W NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 58/295 (19%)

Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                 ED    +     +  G V+R  LS +    R GK    +    ++    +   +
Sbjct: 642 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 700

Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611
               VL   + G   +                                            
Sbjct: 701 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAER 760

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658
            A  K  I        +    I+   ED  +      + Y         V+  ++ G  +
Sbjct: 761 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 820

Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
           R+   +F        G  A      DEI   +++      + ILL +  GQ +R P+  I
Sbjct: 821 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 880

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           R  AGR++ GV   + A G++V+S+  +  AD+D +                + +
Sbjct: 881 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 934


>gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 934

 Score = 1007 bits (2603), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEK+WRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKLWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10]
 gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94]
 gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1]
 gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1]
 gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether]
 gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1]
 gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19]
 gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A]
 gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28]
          Length = 934

 Score = 1007 bits (2602), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 934

 Score = 1006 bits (2601), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEDDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42]
          Length = 941

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 635/905 (70%), Positives = 754/905 (83%), Gaps = 1/905 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVATIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ LDILSSR R+  I+K EL +V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIRDYLDILSSRVRIQTIVKDELSAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT  +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L +GD++ISM IV H DA+  ER  Y+K  +A+RR I  D E+I  +  + 
Sbjct: 721 NSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAAERRAIGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVD 904
            E  D
Sbjct: 901 PEEDD 905



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       + I+L 
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D  E        +
Sbjct: 858 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDDTEGAVDAAEAA 916

Query: 760 AQRRLISGDTEEITSLKNDSSVEGN 784
           A         E   +  +       
Sbjct: 917 AGADETPFADETPVADGDPGGAAEE 941


>gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840]
 gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840]
          Length = 934

 Score = 1006 bits (2600), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TG GS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVIGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13]
 gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
 gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653]
          Length = 934

 Score = 1005 bits (2599), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/915 (64%), Positives = 729/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ ++HT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGIKLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+ A  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   ++A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNMADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1]
 gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1]
          Length = 934

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEI YQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33]
          Length = 934

 Score = 1005 bits (2598), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/915 (64%), Positives = 730/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTLKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F               +K D   +++++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
 gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo]
          Length = 934

 Score = 1004 bits (2595), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 731/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVV+ AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94]
          Length = 934

 Score = 1003 bits (2593), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/915 (65%), Positives = 730/915 (79%), Gaps = 10/915 (1%)

Query: 1   MTEHIISSDEEE--------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M++       ++          GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPV
Sbjct: 1   MSDQTPPPGSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+
Sbjct: 61  HRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NYDG  QEPVVL AR+P
Sbjct: 121 GQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG GGIAVGMATNI  HNLGEV+DGCVA+IDNP I+L  LME+I GPDFPTG +IL
Sbjct: 181 NLLVNGSGGIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KR
Sbjct: 241 GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ 
Sbjct: 301 IDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P T
Sbjct: 361 TLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAIL+LRL RLT LGRD+
Sbjct: 421 AREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRRT I  G  +M+DED 
Sbjct: 481 VADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFF
Sbjct: 541 IAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP PEDE SW NL V+F+T
Sbjct: 601 SSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFST 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++
Sbjct: 661 TRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-E 770
            +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K   A+RR    D  +
Sbjct: 721 DVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLKRSIAERRAQGADDAD 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRAT
Sbjct: 781 DIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRAT 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+
Sbjct: 841 DTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEK 900

Query: 891 VVSVERIRESEIVDE 905
           VVSVERI +++  +E
Sbjct: 901 VVSVERISDADSDEE 915



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 810 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 870 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 928

Query: 763 RLISGD 768
              + +
Sbjct: 929 PAATQE 934


>gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
 gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476]
          Length = 916

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 588/900 (65%), Positives = 714/900 (79%), Gaps = 3/900 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +MG+ +NK Y K
Sbjct: 3   SGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSVDGDPPAA RYTEC
Sbjct: 63  SAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTEC 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 123 RLEKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+A+IDNPDI LD ++EII GPDFPTG +ILGR+G+++AY TGRGSI++R  
Sbjct: 183 NLSEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIILGRSGVRSAYETGRGSIIMRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLRDESDR GYRVVIE
Sbjct: 243 VDIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRT
Sbjct: 303 LKKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVAFREEVVSRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KYLL KAR+RAHVLVGLA+AVAN+DE++ +IR +P+P+TAR +LM+R W A D+  LI L
Sbjct: 363 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 422

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN +G++I + LDIL+S
Sbjct: 423 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ I+K EL ++++E  TPRRT    G  +ME ED I  EDMVVTVSH GY+KRVPL
Sbjct: 483 RVRIMHIVKDELSALREEFATPRRTVFGFGSAEMESEDLIAPEDMVVTVSHSGYIKRVPL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+
Sbjct: 543 NTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLGTPQS 602

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ALIN+L L QGERITTIMP PEDE+SW+ L ++FAT  G VRRNKLSDF+Q+NR+GK
Sbjct: 603 RGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKLSDFVQVNRNGK 662

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGRNSVGVRGI+LAKGD
Sbjct: 663 IAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVLDVRVFAGRNSVGVRGINLAKGD 722

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGD---TEEITSLKNDSSVEGNISEERC 790
           +VISM I+ H +A   ER  Y+K +  +RR    D    + I+  + D   E ++++ER 
Sbjct: 723 KVISMTILEHVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERY 782

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK  EIG LVA FPV   
Sbjct: 783 AELHAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQ 842

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           DQI+LVSD G LIRVPV  IR A R+TKGV IF+TA+ ERVVSVERI E E    +   E
Sbjct: 843 DQIMLVSDGGQLIRVPVEGIRTAGRSTKGVTIFNTAEGERVVSVERISEPEDDTRSLEDE 902



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 9/246 (3%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E C   +D+V+T +  G   R P+   R     G+   GV   +      +  ++   
Sbjct: 675 SVETCTEHDDVVLT-TANGQCIRFPVLDVRV--FAGRNSVGVRGINLAKGDKVISMTILE 731

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V   S     Y ++V      +        I  L    G   T +      E       
Sbjct: 732 HVEATSFERSAYIKRVMNERRAAGADADVEDIISLDEEDGGGETDLTDERYAELHAREQM 791

Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702
           ++  ++ G  +R+   +F         I      K     ++++      ++ I+L +  
Sbjct: 792 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIGKLVAAFPVKAQDQIMLVSDG 851

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A+G++V+S+  +   + D        +  S   
Sbjct: 852 GQLIRVPVEGIRT-AGRSTKGVTIFNTAEGERVVSVERISEPEDDTRSLEDEGEKHSDIV 910

Query: 763 RLISGD 768
            +   +
Sbjct: 911 NMSEEE 916


>gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330]
 gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
 gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330]
 gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686]
          Length = 922

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 58/295 (19%)

Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                 ED    +     +  G V+R  LS +    R GK    +    ++    +   +
Sbjct: 630 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 688

Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611
               VL   + G   +                                            
Sbjct: 689 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAER 748

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658
            A  K  I        +    I+   ED  +      + Y         V+  ++ G  +
Sbjct: 749 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 808

Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
           R+   +F        G  A      DEI   +++      + ILL +  GQ +R P+  I
Sbjct: 809 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 868

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           R  AGR++ GV   + A G++V+S+  +  AD+D +                + +
Sbjct: 869 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 922


>gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365]
 gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365]
 gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 922

 Score = 1003 bits (2592), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ STHT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 90/295 (30%), Gaps = 58/295 (19%)

Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                 ED    +     +  G V+R  LS +    R GK    +    ++    +   +
Sbjct: 630 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 688

Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611
               VL   + G   +                                            
Sbjct: 689 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAER 748

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658
            A  K  I        +    I+   ED  +      + Y         V+  ++ G  +
Sbjct: 749 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 808

Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
           R+   +F        G  A      DEI   +++      + ILL +  GQ +R P+  I
Sbjct: 809 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 868

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           R  AGR++ GV   + A G++V+S+  +  AD+D +                + +
Sbjct: 869 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 922


>gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 922

 Score = 1002 bits (2591), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308]
 gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457]
 gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1]
 gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941]
 gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA
           gyrase C-terminal repeat, beta-propeller [Brucella
           melitensis biovar Abortus 2308]
 gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457]
 gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292]
 gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870]
 gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1]
 gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94]
 gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1]
 gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026]
 gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90]
          Length = 922

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445]
 gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445]
          Length = 922

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/892 (66%), Positives = 723/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE  W NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H D    ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDVTPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/295 (16%), Positives = 91/295 (30%), Gaps = 58/295 (19%)

Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                 ED    +     +  G V+R  LS +    R GK    +    ++    +   +
Sbjct: 630 MPLPEDEDFWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEI-LSVDTCT 688

Query: 585 THTSVLFFSSLGFVYK---------------------------------EKVWRLPIGSP 611
               VL   + G   +                                      +     
Sbjct: 689 EFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDVTPAER 748

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSW----NNLY---------VVFATKHGNVR 658
            A  K  I        +    I+   ED  +      + Y         V+  ++ G  +
Sbjct: 749 SAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGK 808

Query: 659 RNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
           R+   +F        G  A      DEI   +++      + ILL +  GQ +R P+  I
Sbjct: 809 RSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGI 868

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           R  AGR++ GV   + A G++V+S+  +  AD+D +                + +
Sbjct: 869 R-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDTPAATQE 922


>gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583]
 gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis]
 gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583]
          Length = 928

 Score = 1002 bits (2590), Expect = 0.0,   Method: Composition-based stats.
 Identities = 587/915 (64%), Positives = 721/915 (78%), Gaps = 5/915 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTRLPEHDVSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLLFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ KDTVDF+ NYDG   EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGCVA+IDNP+I +D ++ II GPDFPTG +ILG +G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIILGHSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR + +P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W AS++  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGR++I +ELN++
Sbjct: 421 RWPASEVAALIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G +I + L IL+SRSR++ I+K EL ++++   TPRRT    G  +M+ ED IV EDMVV
Sbjct: 481 GEDIADYLGILASRSRIMDIVKSELSALRETFATPRRTVFGFGSAEMDCEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +D+DFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW  L ++FAT  G VRRN
Sbjct: 601 EKVWRLPVGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDFIQ+NR+GKIAMKLD   DEILSVETCT+ +D++L T  GQC+RFP++ IRVF+GR
Sbjct: 661 KLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDIRVFSGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI++ +GD+VISM I+ H +A   ER  Y+K    +RR+   D E+I ++  D 
Sbjct: 721 NSMGVRGINMVEGDKVISMTILEHVEATSVERSAYIKRAINERRVAGSDDEDILTVDEDG 780

Query: 780 SV-EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +++ER  EL   EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD+SK  EI
Sbjct: 781 EETEVELTDERYAELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV + DQI+LVSD G LIRVPVN IRIA R+TKGV +F+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVGERDQIMLVSDGGQLIRVPVNCIRIAGRSTKGVTVFNTAKGEKVVSVERIS 900

Query: 899 ESEIVD---EAESTE 910
           ESE      + ES E
Sbjct: 901 ESENDTNQLDIESEE 915



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 96/241 (39%), Gaps = 14/241 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             D VV ++  G   R P++  R     G+   GV   +      +  ++    V   S 
Sbjct: 693 EHDDVVLITANGQCIRFPVTDIRV--FSGRNSMGVRGINMVEGDKVISMTILEHVEATSV 750

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN--NLYVVFAT 652
               Y ++         +  G    +IL++++    T +    E  +  +     ++  +
Sbjct: 751 ERSAYIKRAINE----RRVAGSDDEDILTVDEDGEETEVELTDERYAELSAHEQMLLTVS 806

Query: 653 KHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           + G  +R+   DF        G  A  L    EI   ++     + + I+L +  GQ +R
Sbjct: 807 EFGYGKRSSSYDFRISGRGGKGIRATDLSKAAEIGKLVAAFPVGERDQIMLVSDGGQLIR 866

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P++ IR  AGR++ GV   + AKG++V+S+  +  ++ D ++     +  S    +   
Sbjct: 867 VPVNCIR-IAGRSTKGVTVFNTAKGEKVVSVERISESENDTNQLDIESEEHSGTVSMSEE 925

Query: 768 D 768
            
Sbjct: 926 K 926


>gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya]
          Length = 922

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP IDL  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
 gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513]
          Length = 922

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEDDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68]
 gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 922

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  D+ILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDKILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
 gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84]
          Length = 934

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 641/911 (70%), Positives = 759/911 (83%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQK AH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  +M+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSIV+RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLR
Sbjct: 241 YETGRGSIVMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F  N+VALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K+EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+++THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTIMP PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT LGQC+RF +S +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFQVSDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISLA GD +ISM IV H DA+  ER  Y+K  +++RR  +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLASGDSIISMTIVNHVDAEPWERAAYLKRSTSERRSTTGEEEEIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK  EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKALEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D++QI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVEDSNQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERISE 900

Query: 900 SEIVDEAESTE 910
            E  D+A   +
Sbjct: 901 PEGDDDAVEAD 911



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       N I+L 
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPVEDSNQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D D      +   
Sbjct: 858 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEGDDDAVEADAEDGV 916

Query: 760 AQRRLISGDTEEITSLKN 777
                     E   + + 
Sbjct: 917 PNGEAEVPAGEAEGTSEE 934


>gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915]
 gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915]
          Length = 922

 Score = 1002 bits (2589), Expect = 0.0,   Method: Composition-based stats.
 Identities = 594/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAGTQE 922


>gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
 gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3]
          Length = 930

 Score = 1001 bits (2588), Expect = 0.0,   Method: Composition-based stats.
 Identities = 626/909 (68%), Positives = 756/909 (83%), Gaps = 1/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTDQSPPGGGKLPPGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGNAAIYDALARMAQDWSLRL LI+GQGNFGS+
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+IDNP I+L  LM+II GPDFPTGA+I+GR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIMGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RG + IE   GDREQI++TE+PYQVNKA M+EK+AELV+EKRI  I+DLR
Sbjct: 241 YETGRGSVIMRGRATIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQ+YRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQIYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+VV RRTKYLL KARDRAHVLVGLAI+VAN+DEV+R+IR +P+P +AR ELM R
Sbjct: 361 FVSFREDVVSRRTKYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAQDVESLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI E L+ILSSR R++ I+K EL++++DE  TPRR+ IVEG  DM+DED I REDMVV
Sbjct: 481 GAEISEYLEILSSRLRIMQIVKDELIAIRDEFGTPRRSEIVEGGPDMDDEDLISREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV  LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ++GKALIN+L L  GERITTIMP PEDE++W  L V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPQSKGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KL DF+Q+NR+GKIAMKL +  DEILSVETCT ++D+LLTT LGQC+RFP+  +RVFAGR
Sbjct: 661 KLGDFVQVNRNGKIAMKLEEEGDEILSVETCTDQDDVLLTTALGQCIRFPVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI++A GD++ISM IV H +A+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSVGVRGINMADGDRIISMTIVGHVEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +SEER QELK +E+F+LTVSEKG+GKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 781 AEEGELSEERYQELKAREEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV++ DQI+LVSD G LIRVPVN IRIASRATKGV IFSTAKDE+VVSVERI E
Sbjct: 841 ELVAAFPVDEGDQIMLVSDGGQLIRVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINE 900

Query: 900 SEIVDEAES 908
            E  +EAE+
Sbjct: 901 PEGDEEAEN 909



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF    R           K     E+++     + + I+L 
Sbjct: 798 EEFVLTVSEKGYGKRSSSYDFRTSGRGGKGIRATDTSKTTEIGELVAAFPVDEGDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P++ IR  A R + GV   S AK ++V+S+  +   + D +      + ++
Sbjct: 858 SDGGQLIRVPVNGIR-IASRATKGVTIFSTAKDEKVVSVERINEPEGDEEAENGNGEDVA 916

Query: 760 AQRRLISGDTEEIT 773
                     E   
Sbjct: 917 DTLPDTPEAPESEA 930


>gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
 gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13]
          Length = 922

 Score = 1001 bits (2587), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/892 (66%), Positives = 723/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ ++HT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGIKLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+ A  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNMADGEKVVSVERISDADSDEE 903



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   ++A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNMADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 922

 Score = 1000 bits (2586), Expect = 0.0,   Method: Composition-based stats.
 Identities = 592/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAH+LVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD  K +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F               +K D   +++++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTLKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99]
 gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99]
          Length = 922

 Score = 1000 bits (2584), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 725/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4]
 gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4]
          Length = 930

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 627/908 (69%), Positives = 751/908 (82%), Gaps = 2/908 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE      +     I  +SI  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MTEQSTPGGKMPSD-IEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+
Sbjct: 60  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAH LLDDL KDTVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 120 DGDPPAAERYTECRLQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A+I+NP IDL  LM+II GPDFPTGA+ILGR+GI++A
Sbjct: 180 GIAVGMATNIPPHNLVEVINGCIALIENPAIDLPELMQIIPGPDFPTGALILGRSGIRSA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNK+ M+EK+AELVR+KRI  I+DLR
Sbjct: 240 YETGRGSVIMRGVARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQS F  NMVALNG KPE+ TL+ +L+A
Sbjct: 300 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLDMLRA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEV+ RRTKYLL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P+TAR +LM+R
Sbjct: 360 FVSFREEVISRRTKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMER 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I  ELN +
Sbjct: 420 RWPAADVESLIRLIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKI 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI + LDILSSR+R+  I+  EL++V+DE  TPRR++I+EG  DM+DED I REDMVV
Sbjct: 480 GAEISDYLDILSSRTRIQTIVVDELVAVRDEFGTPRRSQIMEGGPDMDDEDLIAREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL  YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 540 TVSHLGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RGKALIN+L L  GERITTIMP PEDE+SW+NL V+F+T  G VRRN
Sbjct: 600 EKVWRLPIGTPQSRGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRN 659

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT ++D+LLTT LGQ +RFP+  +RVFAGR
Sbjct: 660 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEVRVFAGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISL   D++ISM I+ H DA+  +R  Y+K  + +RR    D ++I  +  + 
Sbjct: 720 NSIGVRGISLQPNDRIISMTILSHVDAEPWQRAAYLKRSATERRASGVDEDDIALVGEEV 779

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              G++SEER QELK +EQF+LT+SE+G GKR+SSYDFR S R GKGIRATD SK  EIG
Sbjct: 780 GEIGDLSEERYQELKAREQFVLTISERGIGKRSSSYDFRTSGRGGKGIRATDTSKTLEIG 839

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LVSD G LIRVPV+ IRIASRATKGV IF+TAKDE+VVSVERI E
Sbjct: 840 QLVAAFPVEDKDQIMLVSDGGQLIRVPVDGIRIASRATKGVTIFNTAKDEKVVSVERINE 899

Query: 900 SEIVDEAE 907
            E  ++ E
Sbjct: 900 PEGEEDGE 907



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI------LSVETCTQENDILL 698
             +V+  ++ G  +R+   DF      G   ++     +       ++      ++ I+L
Sbjct: 797 EQFVLTISERGIGKRSSSYDFRTS-GRGGKGIRATDTSKTLEIGQLVAAFPVEDKDQIML 855

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  GQ +R P+  IR  A R + GV   + AK ++V+S+  +   + + D  I      
Sbjct: 856 VSDGGQLIRVPVDGIR-IASRATKGVTIFNTAKDEKVVSVERINEPEGEEDGEIGAETSA 914

Query: 759 SAQRRLISGDTEEITS 774
                  +   +E  +
Sbjct: 915 EEGVATDTATPDESAT 930


>gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94]
          Length = 922

 Score =  998 bits (2581), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/892 (66%), Positives = 724/892 (81%), Gaps = 2/892 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    LL D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNI  HNL
Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  +T+  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR 
Sbjct: 432 DPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K+E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMNIVKEEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QEL
Sbjct: 732 VISMAILHHVDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 903



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 916

Query: 763 RLISGD 768
              + +
Sbjct: 917 PAATQE 922


>gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse]
 gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse]
          Length = 925

 Score =  998 bits (2579), Expect = 0.0,   Method: Composition-based stats.
 Identities = 580/911 (63%), Positives = 714/911 (78%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + +   GI  +SI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD C+A+ID+P+I LD ++EII GPDFPTG +ILG +GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIILGHSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+    R+ I+V+EIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELK+   A+V+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLA+AVAN+DE++ +IR + +P+ AR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SRSR++ I+K EL  +++   TPRRT    G  +M+ ED I  EDMVV
Sbjct: 481 GVDIADYLHILASRSRIMSIVKDELNVLREAFATPRRTIFGFGSAEMDCEDLIAPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVLFFSTRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+ALIN+L L QGERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +R+FAGRN
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEDEILSVETCTEHDDVVLTTANGQCIRFPVVEVRIFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-TSLKNDS 779
           SVGVRGI+L  GD+VISM ++ H +A   ER  Y+K +  +RR    D E+I    +ND 
Sbjct: 721 SVGVRGINLTNGDKVISMTLLEHVEATSVERSAYIKRVIHERRAAGADAEDILVLDENDV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LT+SE G+GKR+SSY+FRIS R GKGIRATD SK  EIG
Sbjct: 781 GTETELTDERYAELNAREQMLLTLSEFGYGKRSSSYEFRISGRGGKGIRATDPSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVPV+ IRI  R+TKGV IF+TA+ ++VVSVERI E
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPVDGIRIGGRSTKGVKIFNTAEGKKVVSVERISE 900

Query: 900 SEIVDEAESTE 910
           SE        E
Sbjct: 901 SEDDVSQLDDE 911


>gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 923

 Score =  996 bits (2576), Expect = 0.0,   Method: Composition-based stats.
 Identities = 590/896 (65%), Positives = 722/896 (80%), Gaps = 2/896 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A
Sbjct: 12  IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEVMGKYHPHG+A+IYDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECRL
Sbjct: 72  GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +K    +L D+ KDTVDF+ NYDG  QEPVV+ AR+PN+LVNG GGIAVGMATNIP HNL
Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+DGCVA+I+NP I L+ ++EII GPDFPTG +ILGR GI +AY TGRGS+++RG + 
Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIILGRAGINSAYTTGRGSVIMRGRAT 251

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE   GDRE I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELK
Sbjct: 252 IEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVELK 311

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+  L+ +L+AFVAFREEVV RRTK+
Sbjct: 312 RDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLDMLRAFVAFREEVVTRRTKF 371

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LLNKARDRAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LID
Sbjct: 372 LLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRLID 431

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D  + I  D T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDILSSR 
Sbjct: 432 DPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSSRL 491

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R++ I+K E+++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ 
Sbjct: 492 RVMTIVKDEMIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTT 551

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RG
Sbjct: 552 YRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRG 611

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KALIN+L L QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIA
Sbjct: 612 KALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIA 671

Query: 676 MKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           MKL D  DEILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA GD+
Sbjct: 672 MKLEDEGDEILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLADGDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQEL 793
           VISMAI+ H DAD   R  Y+K   A+RR    D  ++I  +  D   +  ++EE  QEL
Sbjct: 732 VISMAILHHVDADASTRSAYLKRSIAERRAQGADDADDIVVVGEDVGTDAELTEELYQEL 791

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K +E+ +LTVSE G+GKR+SSY+FR+S R GKGIRATD SK +EIG LVA+FPV  +DQI
Sbjct: 792 KAREETVLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQI 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +LVSD G LIRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI E++  +E  S 
Sbjct: 852 LLVSDGGQLIRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISEADSDEENGSE 907



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  +++G  +R+   +F    R   G  A      DEI   +++      + ILL +  
Sbjct: 798 VLTVSEYGYGKRSSSYEFRVSGRGGKGIRATDTSKTDEIGKLVALFPVEASDQILLVSDG 857

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +           + 
Sbjct: 858 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISEADSDEENGSEGEAASEGEA 916

Query: 763 RLISGDT 769
            +   + 
Sbjct: 917 PIADTEE 923


>gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278]
 gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp.
           ORS278]
          Length = 916

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 559/913 (61%), Positives = 692/913 (75%), Gaps = 5/913 (0%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDKEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK Y K AR  G+V+GKYHPHG+ ++Y AL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDDL KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMPAAMRYTESRLTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+ DNP + +D L +II GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRGSIV+RG   I+    DRE I++TEIPYQVNKA+M+E+IAELVREK+I  I+D
Sbjct: 241 SAYHTGRGSIVMRGKVTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVVELKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGRPQTMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + FVAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 QVFVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D+  +I LIDD  + I  DGT  LS  Q +AIL+LRL RLT LGR++I +EL+
Sbjct: 421 SRDWPAQDVAAMITLIDDPRHRINPDGTARLSLEQAKAILDLRLQRLTALGREEISDELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + LDIL SR+R+  I+K EL ++K E  TPRRT I E   +MEDED I REDM
Sbjct: 481 KLAVEIADYLDILRSRARVQDIVKTELSAIKAEFATPRRTVIAEQEGEMEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY KRVPLS YRAQRRGGKGR+G+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLPI +P  RGKALINIL L QGERITTIMP PEDESSW NL V+FAT  GNVR
Sbjct: 601 YKEKVWRLPIAAPNGRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  +EI++V+ CT+ +D+LLT   GQC+RFP++ +RVF G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDEGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+LA+GD++IS+ I+ H +   DER  Y+K   A     + +    T  +  
Sbjct: 721 RTSMGVRGIALAEGDKLISLTILRHVETTSDERTAYLKMRRAMSGETAAEEPVETEGEEA 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++    +S+ER  E+  +EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  
Sbjct: 781 AAGAIQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN-- 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI- 897
           G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE I 
Sbjct: 839 GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIG 898

Query: 898 RESEIVDEAESTE 910
            E+E  + A  TE
Sbjct: 899 EEAENGNGANGTE 911


>gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 941

 Score =  996 bits (2575), Expect = 0.0,   Method: Composition-based stats.
 Identities = 632/899 (70%), Positives = 751/899 (83%), Gaps = 1/899 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGKYHPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGISLA GD++ISM IV H +A+  ER  Y+K  +  RRL +G+ EEI  +  + 
Sbjct: 721 NSIGVRGISLAGGDRIISMTIVRHVNAEPWERAAYLKRAANDRRLTTGEAEEIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER +ELK  EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYEELKQLEQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       + I+L 
Sbjct: 798 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 857

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D  E    +    
Sbjct: 858 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAVEVAEGG 916

Query: 760 AQRRLISGDTEEITSLKNDSSVEGN 784
           A         E   +  + +     
Sbjct: 917 APATDEGAAGEAPIADGDPAGPAEE 941


>gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1]
 gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1]
          Length = 929

 Score =  996 bits (2574), Expect = 0.0,   Method: Composition-based stats.
 Identities = 596/908 (65%), Positives = 724/908 (79%), Gaps = 3/908 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+      +E +  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+  
Sbjct: 1   MTDQTTRGPDEPDD-IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAS 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWS+R+ LI+GQGNFGS+
Sbjct: 60  YESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YDG+  EP +L AR+PN+LVNG G
Sbjct: 120 DGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GCVA+IDNP + L  L+EII GPDFPTG +ILGR+GI +A
Sbjct: 180 GIAVGMATNIPPHNLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIILGRSGIHSA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGS+V+RG + IE+   +RE I++TE+PYQVNKA M+EK+AELVREKRI  I+D+R
Sbjct: 240 YATGRGSVVMRGKTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+A+VILNQLYR+T LQ+ F  NMVALNG KPE   L+ +L+A
Sbjct: 300 DESDRQGYRVVIELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLLDMLRA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVV RRTKYLL K R+RAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R
Sbjct: 360 FVAFREEVVTRRTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMER 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LI D  + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 420 RWPAQDVESLILLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKI 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI++ LDILSSR+R+ GI+K EL++V+DE  TPRRT I EG  DMEDED I REDMVV
Sbjct: 480 GAEIQDYLDILSSRARVQGIVKDELIAVRDEFGTPRRTEITEGGADMEDEDLIPREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KRVPLS+YRAQ RGGKGRSG+  +DEDFVT LF+ +THT +LFFSS G VYK
Sbjct: 540 TVTHKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+G+PQ+ GK L N+L L +GERIT+IMP PEDE SW  L V+FAT  G VRRN
Sbjct: 600 EKVWRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAALDVMFATTRGTVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF Q+NR+GKIAMKLD   DEIL+V TCT+++D+LLT   GQC+RFP++ +RVFAGR
Sbjct: 660 KLSDFTQVNRNGKIAMKLDEEGDEILAVFTCTEDDDVLLTAASGQCIRFPVTDVRVFAGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-DTEEITSLKND 778
           NS+GVRGI+L  GD+VISMAIV H DA   ER  Y+K  +A+RRL +G D EEI     +
Sbjct: 720 NSIGVRGINLPDGDKVISMAIVGHVDATPAERAAYLKQAAAERRLSNGSDEEEIALTNEE 779

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +S ER +ELK +EQF+LTVSE G+GKR+SSYDFR+  R GKGIRATDVSK  EI
Sbjct: 780 VGEETVLSPERYEELKAREQFVLTVSEYGYGKRSSSYDFRVIGRGGKGIRATDVSKREEI 839

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G+L+A FPV   DQI+LVS+ G +IRVPV  IRIASRATKGV IF+TA  ERVVSV+RI 
Sbjct: 840 GSLIAAFPVAPEDQIMLVSNAGQIIRVPVTGIRIASRATKGVTIFNTADGERVVSVDRIS 899

Query: 899 ESEIVDEA 906
           E +  +E 
Sbjct: 900 EPQNGEED 907



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 97/301 (32%), Gaps = 58/301 (19%)

Query: 528 EDEDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                   E+    +     +  G V+R  LS +    R GK    +    ++    +F 
Sbjct: 631 SIMPLPEDEESWAALDVMFATTRGTVRRNKLSDFTQVNRNGKIAMKLDEEGDEI-LAVFT 689

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALIN--------------------- 620
            +    VL  ++ G   +  V  +       + G   IN                     
Sbjct: 690 CTEDDDVLLTAASGQCIRFPVTDVRVFAGRNSIGVRGINLPDGDKVISMAIVGHVDATPA 749

Query: 621 ------------------------ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
                                    L+  +    T + P   +E      +V+  +++G 
Sbjct: 750 ERAAYLKQAAAERRLSNGSDEEEIALTNEEVGEETVLSPERYEELKAREQFVLTVSEYGY 809

Query: 657 VRRNKLSDFIQINR--SGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711
            +R+   DF  I R   G  A  +  R+EI   ++      E+ I+L +  GQ +R P++
Sbjct: 810 GKRSSSYDFRVIGRGGKGIRATDVSKREEIGSLIAAFPVAPEDQIMLVSNAGQIIRVPVT 869

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            IR  A R + GV   + A G++V+S+  +       ++                G+   
Sbjct: 870 GIR-IASRATKGVTIFNTADGERVVSVDRISEPQNGEEDAAVPEGAGEIPPADSEGEGGA 928

Query: 772 I 772
            
Sbjct: 929 E 929


>gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
 gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2]
          Length = 904

 Score =  994 bits (2570), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/903 (61%), Positives = 695/903 (76%), Gaps = 5/903 (0%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+    +D+      I  VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 1   MTDPKDPADDSSSPADIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 61  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILG+ GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIILGKQGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVR+K+I  I+DL
Sbjct: 241 AYHLGRGSIVMRGKVSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L 
Sbjct: 301 RDESDRDGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ ++ LIDD  + I +DGT  LS  Q +AIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RDWPAKDVETMMMLIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+ GI++ EL +VK+E  TPRRT IV+   ++EDED I REDMV
Sbjct: 481 LAVEIADYLDILRSRARVQGIVRDELTAVKNEFATPRRTVIVDQEGEVEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL + QGERITTIMP PEDESSW+ L V+FAT  GNVRR
Sbjct: 601 KEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+   + +D+LLT   GQC+RFP++ +RVF GR
Sbjct: 661 NKLSDFVDVRRSGIIAMKLDEGESIVDVQIAKENDDVLLTAAGGQCIRFPVTDVRVFQGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L  GD++IS+ I+ H D + DER  Y++  +A RR   G  +E  +   ++
Sbjct: 721 TSMGVRGINLGDGDKLISLTILRHMDVNADERAAYLRRANAVRR--GGVEDEAGTDSEEA 778

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    + E+R  E+   EQF+LT+SE G+GKRTSSY++R + R GKGI A  V+  N  G
Sbjct: 779 TGAIELGEQRYVEMSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRN--G 836

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D+DQI+LV+DKG LIR PV +IRIA R+T+GV +F+T+ DERVVSVE + +
Sbjct: 837 KLVASFPVEDSDQIMLVTDKGQLIRCPVEDIRIAGRSTQGVTVFNTSDDERVVSVEHLTD 896

Query: 900 SEI 902
              
Sbjct: 897 EGE 899



 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 13/221 (5%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADA 746
           E+ ++  +  G   R P+S  R    R   G  G+     D V  + +      VL   +
Sbjct: 537 EDMVVTVSHAGYVKRVPLSTYRAQK-RGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSS 595

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                   +  +        G                 I      E    E  ++  +  
Sbjct: 596 RGQVYKEKVWRLPMAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTG 655

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  +R    DF    R   GI A  + +     ++V V    +ND ++L +  G  IR P
Sbjct: 656 GNVRRNKLSDFVDVRR--SGIIAMKLDEGE---SIVDVQIAKENDDVLLTAAGGQCIRFP 710

Query: 867 VNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V ++R+   R + GV   +    ++++S+  +R  ++  + 
Sbjct: 711 VTDVRVFQGRTSMGVRGINLGDGDKLISLTILRHMDVNADE 751



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDIL 697
            S N  +V+  +++G  +R    ++    R   G +AM ++    ++++       + I+
Sbjct: 792 MSANEQFVLTISENGYGKRTSSYEYRTTGRGGKGIVAMSVNGRNGKLVASFPVEDSDQIM 851

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           L T  GQ +R P+  IR  AGR++ GV   + +  ++V+S+  +        E
Sbjct: 852 LVTDKGQLIRCPVEDIR-IAGRSTQGVTVFNTSDDERVVSVEHLTDEGEQSGE 903


>gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
 gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062]
          Length = 930

 Score =  993 bits (2568), Expect = 0.0,   Method: Composition-based stats.
 Identities = 551/910 (60%), Positives = 687/910 (75%), Gaps = 11/910 (1%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +  + +        I  VSITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+VMGKYHPHG++AIYDAL RMAQD+S+RL LI GQGNFGS
Sbjct: 61  MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTECRL+K AH  L D+ KDTV+F  NYDGS QEP VL ARYPN+LVNG 
Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HN+GEV+DG +A+I+ P+I L  LMEII GPDFPTG +ILGR GIK 
Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIILGRAGIKA 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGS+++R     E+    R  I+V+EIPYQVNK+AM+EKIAELVREKRI  I+D+
Sbjct: 241 AYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQG RVVIELK+ A  DVI+NQLYRY+ LQ  F  NMVALNG +PE+  L  +LK
Sbjct: 301 RDESDRQGMRVVIELKKDAVPDVIVNQLYRYSQLQQSFGCNMVALNGGRPEQLALKDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEVV RRT++LL KARDRAHVLVGLA+A AN+D+V+ +IR +P+P TARR+LM+
Sbjct: 361 AFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRTAPDPATARRQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R+W A DI+ LI LIDD  Y I  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIGDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EIK+ LDIL SR R+L I++ EL  V+DE  TPRRT I +G  D++DED I REDMV
Sbjct: 481 LAAEIKDYLDILKSRERILEIVRTELEEVRDEFATPRRTEITDGGGDLDDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPL  YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G  Y
Sbjct: 541 VTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTHTPVLFFSSRGIAY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+  PQARG AL+N+L L QGERIT+I+P PE+E +W  L V+FATK G +RR
Sbjct: 601 KMKVWRLPLAGPQARGNALVNMLPLEQGERITSILPLPENEETWAELDVLFATKRGTIRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF QIN++GKIAMKL+  D I++V T T+++D+LLTT  G C+RFP + +RVF+GR
Sbjct: 661 NKLSDFAQINKNGKIAMKLEEGDGIVNVMTSTEDDDVLLTTSAGMCIRFPTTDVRVFSGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI+LA+GD VISM I+ H D D DER  Y+K   A       ++          
Sbjct: 721 NSVGVRGINLAEGDHVISMTILRHFDCDSDERTAYLKLSRAMSGEEGAESVSFE------ 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  +++ER + +    + ILTVSE G+GKRTSSY++R + R GKGI A  V+  N  G
Sbjct: 775 --DAGMTKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIAAMTVNDRN--G 830

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA F   ++D+I+LV++ G LIR PV+ IR+A R+T+GV++F+T+ DE+VV+VERI E
Sbjct: 831 RLVASFRSEESDEIMLVTNGGQLIRCPVHGIRVAGRSTQGVIVFNTSADEKVVAVERISE 890

Query: 900 SEIVDEAEST 909
           ++  +  E+ 
Sbjct: 891 ADDDENVEAE 900



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 103/290 (35%), Gaps = 47/290 (16%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  V+  +  G ++R  LS +    + GK    + + + D + ++   +    VL  +S 
Sbjct: 646 ELDVLFATKRGTIRRNKLSDFAQINKNGKI--AMKLEEGDGIVNVMTSTEDDDVLLTTSA 703

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY-------- 647
           G   +     +       R    +  ++L +G+ + ++      +   +           
Sbjct: 704 GMCIRFPTTDVR--VFSGRNSVGVRGINLAEGDHVISMTILRHFDCDSDERTAYLKLSRA 761

Query: 648 -------------------------------VVFATKHGNVRRNKLSDFIQINR--SGKI 674
                                          ++  +++G  +R    ++    R   G  
Sbjct: 762 MSGEEGAESVSFEDAGMTKERFEAMDENAEVILTVSENGYGKRTSSYEYRTTGRGGKGIA 821

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AM ++ R+  L     ++E ++I+L T  GQ +R P+  IRV AGR++ GV   + +  +
Sbjct: 822 AMTVNDRNGRLVASFRSEESDEIMLVTNGGQLIRCPVHGIRV-AGRSTQGVIVFNTSADE 880

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +V+++  +  AD D +     +    A                 ++    
Sbjct: 881 KVVAVERISEADDDENVEAEGVSEGGADNGEAGAVPPAPEGDGGETPSAE 930


>gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5]
          Length = 905

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/909 (60%), Positives = 691/909 (76%), Gaps = 5/909 (0%)

Query: 1   MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+    ++       I  VSI+DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+G
Sbjct: 1   MTDPKDPTESGSGPVDIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGS
Sbjct: 61  MYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RLQK AH LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG 
Sbjct: 121 VDGDMPAAMRYTESRLQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A+IDNP + +D L+ I+ GPDFPTG +ILGR GI++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIILGRQGIRS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   IE    DRE IVV+EIPYQVNKA M+E+IAELVR+K+I  ++DL
Sbjct: 241 AYHLGRGSIVMRGKVSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+GYRVV+ELKR A  DV+LNQLY++T LQ+ F  NMVAL+G +P+   L  +L 
Sbjct: 301 RDESDREGYRVVVELKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGRPQVMNLKDLLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FVAFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+P TAR  LM 
Sbjct: 361 VFVAFRENVVSRRTKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ ++ LIDD  + I  DGT  LS  Q +AIL+LRL RLT LGRD+I  EL+ 
Sbjct: 421 RDWPARDVETMMMLIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL SR+R+  I++ EL ++K+E  TPRRT I++   ++EDED I REDMV
Sbjct: 481 LAVEIADYLDILRSRARVQDIVRNELNAIKEEFATPRRTMIIDQEGEVEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQ+RGGKGRSG+  R+EDFV  LF+ STHT VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL + QGERITTIMP PEDESSW  L V+FAT  GNVRR
Sbjct: 601 KEKVWRLPMAAPSARGKALINILPMEQGERITTIMPLPEDESSWGELDVMFATTGGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKL   + I+ V+ C + +D+LLT   GQC+RFPI+ +RVF GR
Sbjct: 661 NKLSDFVDVRRSGIIAMKLGEGEAIVDVQICKENDDVLLTAAGGQCIRFPITDVRVFQGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L +GD++IS+ I+ H D   DER  Y++  +A RR   G  +E  +   ++
Sbjct: 721 TSMGVRGITLGEGDRLISLTILRHMDVSADERAAYLRRANAVRR--GGADDEAGTDHEEA 778

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    + E+R  E+   EQF+LT+SE G+GKR+SSY++R + R GKGI A  V+  N  G
Sbjct: 779 TGAIELGEQRYVEMSANEQFVLTISENGYGKRSSSYEYRTTGRGGKGIVAMSVNDRN--G 836

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L+  FPV+D+DQI+LV+DKG LIR PV +IRI  R+T+GV +F+TA DERVVSVER+ +
Sbjct: 837 KLIGSFPVDDSDQIMLVTDKGQLIRCPVEDIRIVGRSTQGVTVFNTADDERVVSVERLTD 896

Query: 900 SEIVDEAES 908
                  E 
Sbjct: 897 EGEHPSDEE 905


>gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009]
          Length = 887

 Score =  992 bits (2565), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/886 (61%), Positives = 678/886 (76%), Gaps = 6/886 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G EWNK+Y K AR  G+V+GK
Sbjct: 1   MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVDGD PAA RYTE RL K A  LLD
Sbjct: 61  YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD S +EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D C+A
Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY TGRGSIV+RG   IE    DRE
Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIILGRAGIRAAYQTGRGSIVMRGKVEIETVRKDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V+EIPYQVNKA M+E+IAELVREK+I  I DLRDESDR G+RVVIEL+R A  +V+L
Sbjct: 241 AIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLY++T LQ+ F  NMVAL G +P+   L  +L  FVAFRE+VV RRTK+LLNKARDRA
Sbjct: 301 NQLYKFTPLQTNFGANMVALEGGRPQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A+D+  +I LIDD  + +  D
Sbjct: 361 HILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLNPD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LS  Q +AIL+LRL RLT LGR++I  EL+ L +EI + L+IL SR+R+  I+K E
Sbjct: 421 GTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVKTE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  VK E  TPRRT I E   ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK
Sbjct: 481 LGEVKAEFATPRRTVIAEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+  P  RGKALINIL L
Sbjct: 541 GRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPLAPPNGRGKALINILPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QGERITTIMP PEDE+SW+ L V+FAT  GNVRRNKLSDF+ + RSG IAMKLD  + I
Sbjct: 601 EQGERITTIMPLPEDEASWSELDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDEGEAI 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + V+ CT+ +D+LLT   GQC+RFP+  +RVF+GR S+GVRGI+L+ GD VIS++I+ H 
Sbjct: 661 VDVQICTERDDVLLTAAGGQCIRFPVPDVRVFSGRTSMGVRGIALSSGDTVISLSILRHF 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN----ISEERCQELKLKEQFI 800
           +A   ER  Y+K   A RR  +G+  E        + EG+    +S+ER  E+   EQF+
Sbjct: 721 EATPAERSTYLKQSGAIRRAATGEENEPVETPEAEAEEGDTSAALSQERYAEMSASEQFV 780

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT+SE G+GKRTSS+++R + R GKGI A  V+  N  G LVA FPV D+DQI+LV+D G
Sbjct: 781 LTISENGYGKRTSSFEYRTTGRGGKGIVAMSVNSRN--GKLVASFPVEDSDQIMLVTDNG 838

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            LIR PV  IR+A R+T+GV++F+TA DE+VVSVERI E++  +  
Sbjct: 839 QLIRCPVEGIRVAGRSTQGVIVFNTADDEKVVSVERIPETDDGENG 884


>gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M]
          Length = 902

 Score =  992 bits (2564), Expect = 0.0,   Method: Composition-based stats.
 Identities = 589/883 (66%), Positives = 719/883 (81%), Gaps = 2/883 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IYDAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL 
Sbjct: 61  YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+F+ NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA
Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP I+L  LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE
Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQVNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+L
Sbjct: 241 AIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRA
Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD  +T+  D
Sbjct: 361 HVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNED 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            T  LSE Q RAIL+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E
Sbjct: 421 NTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +++V+DE  TPRRT I  G  +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGK
Sbjct: 481 MIAVRDEFATPRRTEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEK+WRLP+G+PQ+RGKALIN+L L
Sbjct: 541 GRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQSRGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683
            QGERITTIMP PEDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL D  DE
Sbjct: 601 QQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ILSV+TCT+ +D+LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H
Sbjct: 661 ILSVDTCTEFDDVLLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHH 720

Query: 744 ADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            DA   ER  Y+K   A+RR    D  ++I  +  D   E  +SE+R QELK +E+ +LT
Sbjct: 721 VDATPAERSAYLKRSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLT 780

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           VSE G+GKR+SSY+FRIS R GKGIRATD SK +EIG LVA+FPV  +DQI+LVSD G L
Sbjct: 781 VSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQL 840

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           IRVPV+ IRIA R+TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 841 IRVPVDGIRIAGRSTKGVTIFNTADGEKVVSVERISDADSDEE 883



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 778 VLTVSEFGYGKRSSSYEFRISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 837

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 838 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 896

Query: 763 RLISGD 768
              + +
Sbjct: 897 PAATQE 902


>gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 945

 Score =  991 bits (2563), Expect = 0.0,   Method: Composition-based stats.
 Identities = 627/899 (69%), Positives = 749/899 (83%), Gaps = 1/899 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA+ID+P I+L  LM+II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+++D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L   D++ISM IV H DA+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +S+ER  EL+ +EQF+LTVS+KGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 TEEGQLSDERYDELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 841 ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 6/155 (3%)

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQE 693
           DE      +V+  ++ G  +R+   DF                K     E+++       
Sbjct: 792 DELRAREQFVLTVSQKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDG 851

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + I+L +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D  E   
Sbjct: 852 DQIMLVSDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAV 910

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            +   +      +                   +EE
Sbjct: 911 EVAEGAPATDEGAAGEGGGDEAPIADGDPAGPAEE 945


>gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1]
          Length = 927

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 585/916 (63%), Positives = 717/916 (78%), Gaps = 6/916 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    ++ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTPLTERDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGS+
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K +  LL D+ KDTVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVDGC+A+ID+P I LD +++II GPDFPTG +ILG +GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGSSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  ++DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A ADV+LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ IL+A
Sbjct: 301 DESDRDGYRVVIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGKPEQMTLLDILRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL +AR+RAHVLVGLAIAVAN+DE++ +IR + +P+ AR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI  LI LIDD  + I  D T +LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAVDIAPLIKLIDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LDIL+SRSR++GI+K EL ++++   TPRRT    G  DM+ ED I  E+MVV
Sbjct: 481 GVDITDYLDILASRSRIMGIVKDELNALREVFATPRRTVFGFGSADMDSEDLIAPEEMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+ALIN+L L QGERITTIMP P+DE  W  L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMK  +  DEILSVETCT+ +D++LTT  GQC+RFP+S +RVF GR
Sbjct: 661 KLSDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDVRVFVGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +S+GVRGI++   D+VISM I+ H +A   ER  Y+K + ++RR    D E+I     +S
Sbjct: 721 HSMGVRGINMGDSDKVISMTILKHVEATSTERSAYIKRVISERRAAGADDEDIVIGDEES 780

Query: 780 SV-EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +++ER  EL   EQ +LTVSE G+GKR+SSYDFRIS R GKGIRATD SK  EI
Sbjct: 781 EATVTELTDERYMELSAHEQMLLTVSEFGYGKRSSSYDFRISGRGGKGIRATDPSKTAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV   DQI+LVSDKG LIRVPVN IRIA R+TKGV IF+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVEAQDQIMLVSDKGQLIRVPVNGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900

Query: 899 ESE----IVDEAESTE 910
           E E      DE ES +
Sbjct: 901 EPEVNASEPDEEESEQ 916


>gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 933

 Score =  990 bits (2560), Expect = 0.0,   Method: Composition-based stats.
 Identities = 601/914 (65%), Positives = 730/914 (79%), Gaps = 5/914 (0%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+       +    GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +
Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRGSIV+RG  +IE+   DRE I++TE+PYQVNK++M+EK+AELVR+KRI  I+D+
Sbjct: 241 AYSTGRGSIVMRGRVNIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F  NMVALNG KPE   L  +LK
Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFVAFREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+
Sbjct: 361 AFVAFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W + D++ LI LIDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN+
Sbjct: 421 RRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNT 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDILSSR+R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMV
Sbjct: 481 IGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGSDMEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS+YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW  LYV+FAT  G VRR
Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           N LSDF+Q+NR+GKIAMKL +  DEIL VETCT ++D+LLT   GQC+RF +  +RVF  
Sbjct: 661 NDLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSL 775
           RNSVGVRGI++A+ D++ISM+++ H DA   ER  Y+K  +A+RRL    +G+ EEI   
Sbjct: 721 RNSVGVRGITMAETDRIISMSVIEHVDASPAERAAYLKRAAAERRLATETAGEEEEIALT 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   E  +S+ R +ELK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK 
Sbjct: 781 NEEIGEETELSDSRYEELKAHEQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKA 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE
Sbjct: 841 AEIGRLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900

Query: 896 RIRESEIVDEAEST 909
           RI E +  +E+E T
Sbjct: 901 RISEPQADEESEET 914



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             YV+  T+ G  +R+   DF                K      +++      ++ I+L 
Sbjct: 802 EQYVLTVTEFGYGKRSSSYDFRLTGRGGKGIRATDVSKAAEIGRLVATFPVGNDDQIMLV 861

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  +R P++ IR FA R + GV   + A+G++V+S+  +    AD +          
Sbjct: 862 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQADEESEETVEGGAD 920

Query: 760 AQRRLISGDTEEI 772
           A     +G     
Sbjct: 921 AAAASDAGPEGAD 933


>gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C]
          Length = 922

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 584/911 (64%), Positives = 720/911 (79%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+ID+P+I LD ++EII GPDFPTG +ILGR+G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVAPLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I E L ILSSR R++GI+K EL ++++E  TPRRT    G  +M +ED IV EDMVV
Sbjct: 481 GVDITEYLHILSSRLRIMGIVKDELSTLREEFVTPRRTVFGFGNAEMNNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+ W+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +R+F GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRIFVGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    DTE+ +   +N+ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDENED 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVEAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SEIVDEAESTE 910
            E        +
Sbjct: 901 PEDDANQLDDD 911



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 91/240 (37%), Gaps = 13/240 (5%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E C  R+D+V+T +  G   R P+   R            +   +        +  H 
Sbjct: 686 SVETCTERDDVVLT-TANGQCIRFPVIDVRIFVGRNSVGVRGINMVDGDKVISMTILEHV 744

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
                    ++ +    R   G+        + I+  N+    T +      E +     
Sbjct: 745 EATSVERSAYIKRAINERRSAGADTED----VVIVDENEDGDETELTDERYAELAAREQM 800

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS------VETCTQENDILLTTK 701
           ++  ++ G  +R+   +F +I+  G   ++    ++ +             ++ I+L + 
Sbjct: 801 LLTVSEFGYGKRSSSYEF-RISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLVSD 859

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ +R PI  IR  AGR++ GV   + AKG++V+S+  +   + D ++     +  S  
Sbjct: 860 GGQLIRVPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQLDDDSEKHSGM 918


>gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 947

 Score =  990 bits (2559), Expect = 0.0,   Method: Composition-based stats.
 Identities = 573/911 (62%), Positives = 709/911 (77%), Gaps = 2/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  I++  E   GI S+SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAEDDITTPPERPTGIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+ +N+ Y K A + GEVMGKYHPHG+++IYDAL RMAQDWSLR  LIEGQGNFGS+
Sbjct: 61  HGMGLTFNRPYRKSAGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K +  LL D+ K+TV+F+ NYDG  QEPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTETRLYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE+VDGCVA+IDNP I L+ LM  I GPDFPTGA++LGR GI +A
Sbjct: 181 GIAVGMATNIPPHNLGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVLGRAGILSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y+TGRGSI++RG +H+E    DRE IV+TE+P+QVNK+ M+EK+A+LVR+KRI  I+D+R
Sbjct: 241 YSTGRGSILMRGKAHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVV+ELKR AS+DVILNQLYR+T LQ+ F  NMVALNG +PE+ TL  +L A
Sbjct: 301 DESDRDGYRVVVELKRDASSDVILNQLYRFTPLQTTFGANMVALNGGRPEQMTLPDMLSA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F++FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R
Sbjct: 361 FISFREEVVNRRTKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W A D+  LI LIDD  + I  +GT  LSE Q RAIL+LRL RLT LGRD+I +ELN +
Sbjct: 421 AWEAKDVAPLIRLIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EI+E L+ILSSR R+  IIK+EL++V+DE  TPRRT + EG  DM+DED I REDMVV
Sbjct: 481 GEEIREYLEILSSRVRVREIIKEELIAVRDEFATPRRTELSEGAADMDDEDLIPREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVY 599
           TVSH GY+KRVPL+ YR+QRRGGKGR+G+ ++++ D VT LF+ +THT VLFFSS G VY
Sbjct: 541 TVSHGGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ SPQ+RGKALIN+L L +GERIT+I+P P D  +   L V+FAT  G VRR
Sbjct: 601 KEKVWRLPLASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF Q+NR+GKIAMKLD   DEIL+V TC++++D+LLT   GQC+RF  + +RVFAG
Sbjct: 661 NKLSDFTQVNRNGKIAMKLDEDGDEILAVATCSEDDDVLLTAASGQCIRFQATDVRVFAG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RNSVGVRGISL +GD+VISMAI+ H DA   ER  Y+K   A      GD     +++ +
Sbjct: 721 RNSVGVRGISLGEGDRVISMAILRHVDATPAERSSYLKMRRAVEGASDGDLTAEPTVEEE 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            + +  I +ER   L   E+ ILTVSE G+GKR+SSY+FR+  R GKGIRATD S+ +EI
Sbjct: 781 GAGDVAIDQERYAYLSAAEEMILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L+A FPV   DQI+LV+D+G LIRVPV  IR A RAT+GV IF TA  ERVVSVERI 
Sbjct: 841 GQLMAGFPVESGDQILLVTDRGQLIRVPVEGIRTAGRATRGVTIFKTADGERVVSVERIP 900

Query: 899 ESEIVDEAEST 909
           +    +  E+ 
Sbjct: 901 DQGADEAGEAE 911



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           ++  ++ G  +R+   +F  I R           +     ++++       + ILL T  
Sbjct: 802 ILTVSEFGYGKRSSSYEFRVIGRGGKGIRATDTSRASEIGQLMAGFPVESGDQILLVTDR 861

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR + GV     A G++V+S+  +    AD               
Sbjct: 862 GQLIRVPVEGIRT-AGRATRGVTIFKTADGERVVSVERIPDQGADEAGEAEADTIDGDLE 920

Query: 763 RLISGDTEEITSLKNDSSVEGNISEER 789
                 +    +  + ++ +G++  + 
Sbjct: 921 DGGVDGSTPDETGPDAAAPDGDVPPQE 947


>gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 922

 Score =  990 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 584/911 (64%), Positives = 722/911 (79%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP+I LD ++EII GPDFPTG +ILGR+G+++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIILGRSGVRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L ILSSR R++GI+K EL ++++E  TPRRT    G  +M++ED IV EDMVV
Sbjct: 481 GVDITDYLHILSSRLRIMGIVKNELSTLREEFVTPRRTVFGFGNAEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVF GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFVGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-ITSLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    DTE+ +   +++ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRSAGADTEDVVIVDEDED 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 GDETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPNKTVEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVS+ G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVEAQDQIMLVSNGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SEIVDEAESTE 910
            E        +
Sbjct: 901 PEDDANQLDDD 911



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 91/240 (37%), Gaps = 13/240 (5%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E C  R+D+V+T +  G   R P+   R            +   +        +  H 
Sbjct: 686 SVETCTERDDVVLT-TANGQCIRFPVIDVRVFVGRNSVGVRGINMVDGDKVISMTILEHV 744

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
                    ++ +    R   G+        + I+  ++    T +      E +     
Sbjct: 745 EATSVERSAYIKRAINERRSAGADTED----VVIVDEDEDGDETELTDERYAELAAREQM 800

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS------VETCTQENDILLTTK 701
           ++  ++ G  +R+   +F +I+  G   ++    ++ +             ++ I+L + 
Sbjct: 801 LLTVSEFGYGKRSSSYEF-RISGRGGKGIRATDPNKTVEIGKLVAAFPVEAQDQIMLVSN 859

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ +R PI  IR  AGR++ GV   + AKG++V+S+  +   + D ++     +  S  
Sbjct: 860 GGQLIRVPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQLDDDSEKHSGM 918


>gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060]
 gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060]
          Length = 911

 Score =  990 bits (2558), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/899 (62%), Positives = 696/899 (77%), Gaps = 6/899 (0%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++  +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M +
Sbjct: 6   KNDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYE 65

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++KYVK ARI G+VMG+YHPHG+ +IYDAL RMAQD+++R++L++GQGNFGS+DG
Sbjct: 66  NGYLPDRKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDG 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE RL K A  LL+D+ K+TVDF PNYD S  EP VL AR+PN+LVNG GGI
Sbjct: 126 DPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+DGCVA+ID+P + ++AL EII GPDFPTG +ILGR G + AY 
Sbjct: 186 AVGMATNIPPHNLGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLILGRAGTRAAYM 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+V+R  SH+E+   +RE +V TEIPYQVNKA+++EKIA+LVREKRI  +ADLRDE
Sbjct: 246 TGRGSVVMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDE 305

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +++AF+
Sbjct: 306 SDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQAFI 365

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR  LM R W
Sbjct: 366 DFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDW 425

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A+DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT LGRD++ +EL  L  
Sbjct: 426 PAADIAPLIALVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLAD 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI + LDIL SR+R+LGI+K EL  V+ E  TPR+T I +   ++EDED I REDMVVTV
Sbjct: 486 EIADYLDILRSRARILGIVKAELAEVRAEYATPRKTEIQDWDSNVEDEDLIQREDMVVTV 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+KRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YKEK
Sbjct: 546 SHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           VWRLP+ +P ARGKAL+NIL L+Q GERITTIMP PEDE+SW  L V+FAT  GNVRRNK
Sbjct: 606 VWRLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRRNK 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+Q+NR+GKIAMKLD  D I+ VE CT+ +D+LLTT  GQC+RFP++ +RVF GR+S
Sbjct: 666 LSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGRDS 725

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI+L K D+VISM I+ H +A  +ER  Y++  +A RR      +  T+ + D   
Sbjct: 726 TGVRGINLGKDDRVISMTILRHFEATPEERQAYLRRANADRRATGEAVDLPTAPEADGEE 785

Query: 782 ---EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                ++ +ER  ++   EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+  N  
Sbjct: 786 TTASIDLGQERYIDMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNARN-- 843

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+TAKDERVVSVE I
Sbjct: 844 GHLVASFPVEPSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEHI 902



 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 14/222 (6%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH-------AD 745
           E+ ++  +  G   R P+S  R    R   G  G++    D V  + +          + 
Sbjct: 539 EDMVVTVSHAGYIKRVPLSTYRA-QRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSS 597

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                +    +   A           I  L         I      E   +   ++  + 
Sbjct: 598 QGQAYKEKVWRLPLAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATA 657

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G  +R    DF   NR+GK   A  + +      +V V    + D ++L +  G  IR 
Sbjct: 658 SGNVRRNKLSDFVQVNRNGK--IAMKLDEG---DHIVHVEICTEADDVLLTTAAGQCIRF 712

Query: 866 PVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           PV ++R+   R + GV   +  KD+RV+S+  +R  E   E 
Sbjct: 713 PVTDVRVFKGRDSTGVRGINLGKDDRVISMTILRHFEATPEE 754


>gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
 gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73]
          Length = 923

 Score =  988 bits (2555), Expect = 0.0,   Method: Composition-based stats.
 Identities = 576/912 (63%), Positives = 718/912 (78%), Gaps = 2/912 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+T+DF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLY YT LQ+ F  N+VALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAH+LVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  L+ LIDD  + I  + T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + L IL+SR R++GI+K EL ++++E   PRRT    G ++M++ED IV EDMVV
Sbjct: 481 GVDITDYLHILASRLRIMGIVKDELSTLREEFAAPRRTIFGFGNIEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L +GERITTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSKLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKLD   D ILSVETCT+ +D++LTT  GQC+RFP+  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANGQCIRFPVIDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NSVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR    D E++  +  + 
Sbjct: 721 NSVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRAAGADAEDVVIVDENG 780

Query: 780 S-VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EI
Sbjct: 781 EGTETELTDERYAELAAREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEI 840

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV   DQI+LVSD G LIR+P+  IRIA R+TKGV IF+TAK E+VVSVERI 
Sbjct: 841 GKLVAAFPVKAQDQIMLVSDGGQLIRIPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERIS 900

Query: 899 ESEIVDEAESTE 910
           + E        +
Sbjct: 901 DPEDDANQLDDD 912



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 91/238 (38%), Gaps = 11/238 (4%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E C  R+D+V+T +  G   R P+   R     G+   GV   +      +  ++   
Sbjct: 687 SVETCTERDDVVLT-TANGQCIRFPVIDVRV--FAGRNSVGVRGINMVDGDKVISMTILE 743

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V   S     Y ++       +       +I  +  N     T +      E +     
Sbjct: 744 HVEATSVERSAYIKRAINERRAAGADAEDVVI--VDENGEGTETELTDERYAELAAREQM 801

Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702
           ++  ++ G  +R+   +F         I      K     ++++      ++ I+L +  
Sbjct: 802 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKTAEIGKLVAAFPVKAQDQIMLVSDG 861

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           GQ +R PI  IR  AGR++ GV   + AKG++V+S+  +   + D ++     +  S 
Sbjct: 862 GQLIRIPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANQLDDDSEKHSG 918


>gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
 gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2]
          Length = 914

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 543/911 (59%), Positives = 679/911 (74%), Gaps = 5/911 (0%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +        E    I  VSIT+E+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MADSETPKPGGEPPSDIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK Y K AR+ G+V+GKYHPHG+ ++YDAL RMAQ +++RL L++GQGNFGS
Sbjct: 61  MHENGYEWNKSYRKSARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTE RL+K  + LLDDL KDTVDF+ NYD S  EP VL A++PN+LVNG 
Sbjct: 121 VDGDAPAAMRYTEVRLEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGE+VD  VA++D+P ++ +AL++++ GPDFPTGA+ILGRTGI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALILGRTGIRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI++R    IE    +RE ++VTEIPYQVNKA M+EK+AELVR+KRI  IA++
Sbjct: 241 AYLTGRGSILMRAKVAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G KP   TL  +L 
Sbjct: 301 RDESDRDGMRVVIEIKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGKPGVLTLHDVLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P +AR  LM 
Sbjct: 361 AFIAFREEVISRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMA 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  LI LI D  + +G D T  LS  Q RAIL+LRL RLT LGRD+I  EL+ 
Sbjct: 421 RDWPAKDMAPLIALIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI + LDIL+SR R+  I++ EL+++K+E  TPRRT IVEG  D+EDED I RE+MV
Sbjct: 481 LAVEIADYLDILASRPRMRAIVRAELIAIKEEFGTPRRTEIVEGFGDLEDEDLIQREEMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS YRAQRRGGKGRS +  RDEDFVT LF+ STH  VLFFSS G VY
Sbjct: 541 VTVSHAGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+ +PQARGKALINIL L Q ERIT+++  PED      L ++FAT  G VRR
Sbjct: 601 KLKVWRLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N L+DF Q+NR+GKIAMKL+  + I  V  CT+++D+LLTT  G C+RFP++ +RVF GR
Sbjct: 661 NALTDFQQVNRNGKIAMKLNEGEAIADVGLCTEDDDVLLTTAAGACIRFPVTDVRVFKGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +SVGVRGI L  GD +ISMAI+ H DA  +ER+ Y+K   A               +  +
Sbjct: 721 DSVGVRGIRLEDGDTIISMAIIGHVDASAEERLAYIKRRRAL--AGEATEAGDVEAEEGA 778

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S  G++ ++R  E+  KEQFILTVSE G+GKRTSSY++R++ R GKGI A  V++ N  G
Sbjct: 779 SGNGHLGQDRYAEMGAKEQFILTVSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--G 836

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LV+D G LIR PV+ IRI  RA++GV++F TA+ ERVVSVE I +
Sbjct: 837 RLVASFPVEDQDQIMLVTDGGQLIRCPVDGIRIVGRASQGVIVFDTAEGERVVSVEHISD 896

Query: 900 SEIVDEAESTE 910
               + ++  E
Sbjct: 897 DAGAENSDGEE 907


>gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
 gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46]
          Length = 914

 Score =  988 bits (2554), Expect = 0.0,   Method: Composition-based stats.
 Identities = 552/901 (61%), Positives = 687/901 (76%), Gaps = 6/901 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           + E   +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 3   LAEKDETGAPPPASDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSM 62

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G    +KYVK ARI G+VMG+YHPHG+ +IYDAL RMAQD+++RL+L++GQGNFGS+
Sbjct: 63  YENGYLPERKYVKSARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSI 122

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K A  LL+D+ K+TVDF PNYD S  EP VL AR+PN+LVNG G
Sbjct: 123 DGDPPAAMRYTESRLAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAG 182

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV++GC+A+ID+P + ++ L EII GPDFPTG  ILGR G + A
Sbjct: 183 GIAVGMATNIPPHNLGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQILGRAGTRAA 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++R  SH+E+   +RE +V TEIPYQVNKA+++EKIAELVR+KRI  ++DLR
Sbjct: 243 YMTGRGSVIMRAKSHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLR 302

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +++A
Sbjct: 303 DESDRDGMRIVVELKRDAMADVVLNQLYRYTPLQTSFGCNMVALNGGRPELLNLKDLIQA 362

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P +AR  LM R
Sbjct: 363 FIDFREEVVSRRTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMAR 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI  LI L+DD  + +  DGT  LS+ Q RAIL+LRL RLT LGRD++ +EL  L
Sbjct: 423 DWPAVDIAPLIALVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQL 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI + LDIL SR+R+LGI+K EL  V+ E  TPRRT I +    +EDED I REDMVV
Sbjct: 483 ADEIADYLDILRSRARILGIVKAELAEVRAEFATPRRTEIQDWDSTVEDEDLIQREDMVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YK
Sbjct: 543 TVSHAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYK 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           EKVWRLP+ +P ARGKAL+NIL L+   ERITTIMP PEDE+SW  L V+FAT  G+VRR
Sbjct: 603 EKVWRLPLAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRR 662

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+Q+NR+GKIAMKLD  D I+ VE CT+ +D+LLTT  GQC+RFP++ +RVF GR
Sbjct: 663 NKLSDFVQVNRNGKIAMKLDEGDHIVHVEICTEADDVLLTTAAGQCIRFPVTDVRVFKGR 722

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +S GVRGI+L  GD+VISM I+ H +A  +ER  Y++  +A RR      E   + + D 
Sbjct: 723 DSTGVRGINLGSGDRVISMTILRHFEATPEERQAYLRRANADRRATGEAIELPATPEADG 782

Query: 780 SVEG---NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                  ++ +ER   +   EQF+LT+SE+GFGKRTSS+++RIS R GKGI+A +V+  N
Sbjct: 783 EETAASIDLDQERYIAMGAAEQFVLTLSERGFGKRTSSFEYRISGRGGKGIKAMEVNTRN 842

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+TAKDERVVSVE 
Sbjct: 843 --GHLVASFPVETSDQIMLVTNGGQLIRVPVDDIRIVGRASQGVTVFNTAKDERVVSVEH 900

Query: 897 I 897
           I
Sbjct: 901 I 901


>gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
 gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242]
          Length = 912

 Score =  988 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 550/901 (61%), Positives = 683/901 (75%), Gaps = 6/901 (0%)

Query: 1   MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E     D+ E+    I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF
Sbjct: 1   MAEDDTKKDDPEKHGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL+L++GQGNFG
Sbjct: 61  SMNENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVD DPPAA RYTE RL K A  LL+D+ + TVDF+PNYDG   EP VL AR+PN+LVNG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D  +A+ID PD+ +  LMEI+ GPDFPT A ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATILGRGGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           NAYATGRGSI++R  + IE    +RE I+ TEIPYQVNKAA++E+IAELV+EKR+  IAD
Sbjct: 241 NAYATGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F+VNM+ALNG +PE  TL  +L
Sbjct: 301 LRDESDRDGMRIVVELKREAVADVVLNQLWRHTALQSSFAVNMIALNGGRPELMTLHDVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV FRE VV RRTK+ L KARD AH+ VGLAIAVAN+DEV+R+IR SP+   AR  LM
Sbjct: 361 RAFVDFRETVVTRRTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D+  L++LI D  + +  DGT+ LSE Q RAIL+LRL RLT LGR++I   LN
Sbjct: 421 ARDWPAKDMAPLVELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  EI E L+IL SR +L GIIK E+L+VK+   TPRRT+I +   D+EDED I REDM
Sbjct: 481 KLAAEIAEYLEILRSREKLFGIIKDEMLAVKEAYATPRRTQITDAEGDVEDEDLIAREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPLS YRAQRRGGKGRSG+ M++EDFV  LF+ +THT VLFFSS G  
Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKA 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+ +PQARGKAL+N+L L  GERITTIMP PEDESSW  L V+FAT  G VR
Sbjct: 601 YKEKVWRLPLAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + R+G IAMKLD  + I+ V T T+ +DILLTT  GQC+RF +  +RVF G
Sbjct: 661 RNKLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEVRVFQG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD--TEEITSLK 776
           R S+GVRG+SL +GD+VIS++I+ H +A  +ER  Y+K  +A RR +  D   +     +
Sbjct: 721 RTSMGVRGVSLGQGDRVISLSILNHFEATGEERTAYLKRANALRRRMGEDVSPDAGAEAE 780

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             ++    +++ER   +++ EQ ILTVSE G+GKRTSSY++R + R GKGI A  V+  N
Sbjct: 781 EAATGAVELTDERFAAMQVAEQIILTVSENGYGKRTSSYEYRTTGRGGKGIVAMAVNARN 840

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV   D+I+LV++ G LIR PV+ IRIA R+T+GV++F+TA+DERVVSVE 
Sbjct: 841 --GKLVASFPVGQGDEIMLVTNGGQLIRCPVDGIRIAGRSTQGVIVFNTAEDERVVSVEH 898

Query: 897 I 897
           I
Sbjct: 899 I 899


>gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888]
          Length = 915

 Score =  988 bits (2553), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/914 (59%), Positives = 686/914 (75%), Gaps = 8/914 (0%)

Query: 1   MTEHIIS--SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT++         E   I  VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF
Sbjct: 1   MTDNSDDERPAGREPSDIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G++WNKKYVK ARI GEVMGKYHPHGN AIYDAL R+AQD+S+R+ L++GQGNFG
Sbjct: 61  AMNELGLDWNKKYVKSARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGDPPAAERYTE RL K A FLLDDL  DTVD+R NYDG+ QEP VL A++PN+LVNG
Sbjct: 121 SIDGDPPAAERYTESRLAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A +DNP+I +D L +II+GPDFPT  +ILGR GI 
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLILGRGGIL 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY  GRGSI++R    +E    DRE +VV+EIPYQVNK  ++EKIA+LVR+K+I  I+D
Sbjct: 241 SAYHKGRGSIIMRARVTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           L DES+R+G R+VIELKR A ADV+LN LY+Y+ LQ+ F  NM+A+NG +PE  TL   +
Sbjct: 301 LWDESNREGIRIVIELKRDAVADVVLNNLYKYSDLQTTFGANMLAINGGRPESLTLKDFI 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF +FR++VV RR K+LLNKARDRAHVLVGLAIAVAN+DEV+++IRFS +P  A+ +LM
Sbjct: 361 SAFTSFRQDVVTRRIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D+  LI+LI D  + + + GT  LSE Q +AILELRLARLT LGRD+I +ELN
Sbjct: 421 ARDWPAKDMVPLIELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  EI+E L IL+SR+R++ I+K EL ++KDE  TPR+T IV+   ++EDED I RED 
Sbjct: 481 KIANEIREYLAILASRARVVDIVKGELQTIKDEFATPRKTEIVDIEGEVEDEDLIQREDC 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  RDEDFVT LF+ STHT VLFFSS G  
Sbjct: 541 VVTVSHKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMC 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ KVWRLP  SPQ+ GKAL+N+L L Q E IT+I+P PED S+W+ L ++FAT+ GNVR
Sbjct: 601 YRMKVWRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-IRVFA 717
           RN L+DF  INR+GKIAMKLD  D I+ V     + D+LLT+  GQCVRF IS  IR+F 
Sbjct: 661 RNALADFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFK 720

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR+S GVRGI L  GD+VISMAI+ H +A  +ER  Y+K  SA RR    +  E  +  +
Sbjct: 721 GRDSTGVRGIRLGDGDEVISMAILDHFEASAEERAAYLKQASALRRSEETEDAEPVAEAD 780

Query: 778 DSSVEGN---ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              V      +S ER   ++  EQF+LTVS KGFGKR+SS++FR S R GKGI A  V+ 
Sbjct: 781 AEEVSAEAVTLSPERFAVMQAGEQFVLTVSSKGFGKRSSSFEFRTSGRGGKGIVAMVVND 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G L+A FP+++ DQI+LV+D G LIR PV+ +RIA R T+GV IF T  +E+VVSV
Sbjct: 841 RN--GRLLASFPIDEKDQIMLVTDGGQLIRCPVDGVRIAGRNTQGVRIFKTEAEEKVVSV 898

Query: 895 ERIRESEIVDEAES 908
           ERI E E  + +E 
Sbjct: 899 ERITEDETDEGSEG 912


>gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 945

 Score =  987 bits (2551), Expect = 0.0,   Method: Composition-based stats.
 Identities = 625/899 (69%), Positives = 746/899 (82%), Gaps = 1/899 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNKKYVKCAR++G+VMGK+HPHGN+AIYDALARMAQ WSLRL LI+GQGNFGSV
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A+ID+P I+L  L++II GPDFPTGA ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLSEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+EK+AELVR+KRI  I+DLR
Sbjct: 241 YETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVV+ELKR A+ADVILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRQGYRVVVELKRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R
Sbjct: 361 FVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +
Sbjct: 421 RWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ LDILSSR R+  I+K ELL+V+DE  TPRRT IV+G L+M+DED I REDMVV
Sbjct: 481 GEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RD DFV+ LF+V+THT VLFFSS G VYK
Sbjct: 541 TVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+SW+NL V+F+T  G VRRN
Sbjct: 601 EKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS+GVRGI+L   D++ISM IV H DA+  ER  Y+K  + +RR    D E+I  +  + 
Sbjct: 721 NSIGVRGINLGDSDRIISMTIVGHVDAEPWERAAYLKRSATERRATGVDEEDIALVGEEV 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             EG +S++R  EL+ +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG
Sbjct: 781 IEEGQLSDDRYDELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LVA FP++D DQI+LVSD G LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 841 ELVAAFPIDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 899



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 6/155 (3%)

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQE 693
           DE      +V+  ++ G  +R+   DF                K     E+++       
Sbjct: 792 DELRAREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTAEIGELVAAFPIDDG 851

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + I+L +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D  E   
Sbjct: 852 DQIMLVSDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAV 910

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            +   S      + D                 +EE
Sbjct: 911 EIAEGSPATEEGAADEGGGDEAPIADGDPAGPAEE 945


>gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
 gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A]
          Length = 913

 Score =  986 bits (2550), Expect = 0.0,   Method: Composition-based stats.
 Identities = 562/905 (62%), Positives = 689/905 (76%), Gaps = 4/905 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +E     +     GI  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   SEDTKPGEPPAPSGIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMH 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ II GPDFPTG +ILGR GI++AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIILGRQGIRSAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRGSIV+RG   I+    DRE IV++EIPYQVNKA+M+E+IAELVREK+I  I+DLRD
Sbjct: 244 HLGRGSIVMRGKVSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR+G+RVV+ELKR A  +V+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L  F
Sbjct: 304 ESDREGFRVVVELKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P  AR  LM R 
Sbjct: 364 IAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 424 WPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + LDIL SR+R+  IIK EL +VK E  TPRRT IVE   ++EDED I REDMVVT
Sbjct: 484 IEIADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW  L V+FAT  G VRRNK
Sbjct: 604 KVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF+GR S
Sbjct: 664 LSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSGRTS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITSLKN 777
           +GVRGI+LAKGD+VIS++I+ H DA   ER  Y+K   A RR  +G+     E       
Sbjct: 724 MGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            +  + ++ E R  E+   EQF+LTV+ +G+GKR+SS++FR+S R GKGIRATD +K+ E
Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTAQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGE 843

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA DE VVSVE I
Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADDEHVVSVEHI 903

Query: 898 RESEI 902
           RE   
Sbjct: 904 REDGE 908



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 58/214 (27%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           ADY + +     + A  +      +   +    + +     E   ++L  +E  ++TVS 
Sbjct: 487 ADYLDILRSRARVQAIIKTELDAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSH 546

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKI------------------------------ 835
            G+ KR     +R   R GKG                                       
Sbjct: 547 AGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 836 -------NEIGA-LVAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869
                  N  G  L+ + P++  +                   ++  +  GT+ R  +++
Sbjct: 607 RLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWAALDVMFATTSGTVRRNKLSD 666

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                R+  G++     + E +V V+   E + V
Sbjct: 667 FVDVRRS--GIIAMKLGEGESIVDVQICTERDDV 698



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 92/282 (32%), Gaps = 28/282 (9%)

Query: 486 ECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTRIVEGL----LDMEDEDCIVREDMVV 540
           E     ++   +       +   K  +    RR+ I+         + D       D V+
Sbjct: 640 EDESSWAALDVMFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVL 699

Query: 541 TVSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED----FVTDLFIVSTHTSVLFFSS 594
             +  G   R P++  R  + R     R   + + +      +   F  +      +   
Sbjct: 700 LTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQ 759

Query: 595 LGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            G + +        P  +     +A    LSL +G  +                +V+  T
Sbjct: 760 SGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYVE---------MGAAEQFVLTVT 810

Query: 653 KHGNVRRNKLSDF-IQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707
             G  +R+   +F +       I      KL     +++       + I+L +  GQ +R
Sbjct: 811 AQGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIR 870

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            P+  IR    R S GVR  + A  + V+S+  +     + +
Sbjct: 871 VPVEGIR-ITSRASKGVRVFNTADDEHVVSVEHIREDGENGN 911


>gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 931

 Score =  986 bits (2549), Expect = 0.0,   Method: Composition-based stats.
 Identities = 598/914 (65%), Positives = 727/914 (79%), Gaps = 5/914 (0%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+       +    GI  +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +
Sbjct: 181 GGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRGSIV+RG  +IE+   DRE I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+
Sbjct: 241 AYSTGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F  NMVALNG KPE  TL  +LK
Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV+FREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+
Sbjct: 361 AFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++ LI LIDD  + I +DGT  LSE Q RAILELRL RLT LGRD+I +ELNS
Sbjct: 421 RRWPAGDVESLILLIDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNS 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDILSSR+R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMV
Sbjct: 481 IGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS+YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW  L V+FAT  G VRR
Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF+Q+NR+GKIAMKL +  DEIL VETCT  +D+LLT   GQC+RF +  +RVF  
Sbjct: 661 NKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK---HMSAQRRLISGDTEEITSL 775
           RNSVGVRGI++A+ D++ISM+++ + DA   ER  Y+K            +G+ EEI   
Sbjct: 721 RNSVGVRGITMAETDRIISMSVIENVDASPAERAAYLKRAAAERRLAAGANGEEEEIALT 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   E  +S+ER + LK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK 
Sbjct: 781 NEEIGEEAELSDERYEFLKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKT 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE
Sbjct: 841 AEIGRLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900

Query: 896 RIRESEIVDEAEST 909
           RI E +  +E+E T
Sbjct: 901 RISEPQSDEESEET 914



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             YV+  T++G  +R+   DF                K      +++      ++ I+L 
Sbjct: 802 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLV 861

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  +R P++ IR FA R + GV   + A+G++V+S+  +    +D +          
Sbjct: 862 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEETVEGGTE 920

Query: 760 AQRRLISGDTE 770
           +       + E
Sbjct: 921 SAPDAGPENAE 931


>gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
 gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 906

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 624/885 (70%), Positives = 747/885 (84%), Gaps = 1/885 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGK
Sbjct: 1   MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHGN+AIYDALARMAQDWSLRL LI+GQGNFGS+DGDPPAAERYTECRL+KAAH LLD
Sbjct: 61  FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDFR NYDG+ QEPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGCVA
Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NP I+L  +M+II GPDFPTGA+I+GR+GI++AY TGRGS+++RGV+ IE   GDRE
Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIMGRSGIRSAYETGRGSVIMRGVATIEPMRGDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI++TE+PYQVNKA+M+EK+AELV+EKRI  I+DLRDESDRQGYRVVIELKR A+A+VIL
Sbjct: 241 QIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FRE+VV RRTKYLL KARDRA
Sbjct: 301 NQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAI+VAN+DEV+R+IR +P+P +AR +LM R W A D++ LI LIDD  + I  D
Sbjct: 361 HVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRINED 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRLARLT LGRD+I +ELN +G EI E LDILSSR R+  I+K E
Sbjct: 421 GTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVKDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L+S++DE  TPRR++IVEG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGK
Sbjct: 481 LVSIRDEFGTPRRSQIVEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  RDEDFV  LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ++GKALIN+L L
Sbjct: 541 GRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQSKGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDE 683
             GERITTIMP PEDE++W  L V+F+T  G VRRNKL DF+Q+NR+GKIAMKLD   DE
Sbjct: 601 EPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ILSVETCT  +D+LLTT LGQC+RFP+  +RVFAGRNSVGVRGI++A+GD++ISM IV H
Sbjct: 661 ILSVETCTDRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGH 720

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +A+  ER  Y+K  + +RR    D E+I  +  + + EG +SEER QELK +E+F+LTV
Sbjct: 721 VEAEPWERAAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTV 780

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S KGFGKR+SSYDFR S R GKGIRATD +K NEIG LVA FPV + DQI+LVSD G LI
Sbjct: 781 SVKGFGKRSSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLI 840

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           RVPVN IRIASRATKGV IFSTAKDE+VVSVERI E E  DEAE+
Sbjct: 841 RVPVNGIRIASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAEN 885



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 89/299 (29%), Gaps = 57/299 (19%)

Query: 530 EDCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                 E    T+     +  G V+R  L  +    R GK    +    ++    +   +
Sbjct: 610 MPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRNGKIAMKLDEEGDEI-LSVETCT 668

Query: 585 THTSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
               VL  ++LG   +  V  +       + G   IN+   ++   +T +     +    
Sbjct: 669 DRDDVLLTTALGQCIRFPVDDVRVFAGRNSVGVRGINMAEGDRIISMTIVGHVEAEPWER 728

Query: 644 --------------------------------------------NNLYVVFATKHGNVRR 659
                                                          +V+  +  G  +R
Sbjct: 729 AAYLKRSATERRAAGVDEEDIALVGEEVTEEGELSEERYQELKAREEFVLTVSVKGFGKR 788

Query: 660 NKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +   DF    R           K +   E+++     + + I+L +  GQ +R P++ IR
Sbjct: 789 SSSYDFRTSGRGGKGIRATDTAKTNEIGELVAAFPVEEGDQIMLVSDGGQLIRVPVNGIR 848

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
             A R + GV   S AK ++V+S+  +   + D +                    E   
Sbjct: 849 -IASRATKGVTIFSTAKDEKVVSVERINEPEGDDEAENGNDDEADDNLPDAPEAPESEA 906


>gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3]
          Length = 922

 Score =  986 bits (2548), Expect = 0.0,   Method: Composition-based stats.
 Identities = 583/911 (63%), Positives = 722/911 (79%), Gaps = 1/911 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S+ +   GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+ +NK Y K A + GEVMGK+HPHG+A+IYDAL RMAQD+SLR  LI+GQGNFGSV
Sbjct: 61  NEMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTECRL+K A  LL D+ K+TVDF+ NYDG  +EP+VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A+IDNP I LD ++EII GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+   +R+ I+V+EIPYQ+NKA M+EKIAELVR+KRI  I+DLR
Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR GYRVVIELKR A AD++LNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+A
Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGKPEQMTLLDMLRA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FREEVV RRTKYLL KAR+RAHVLVGLAIAVAN+DE++ +IR +P+P+TAR +LM+R
Sbjct: 361 FVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLMER 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A+D+  LI LIDD  + I  D T  LSE Q RAILELRL RLT LGRD+I +ELN +
Sbjct: 421 RWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKI 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G++I + LD+L+SR R++GI+K EL +++ E  TPRRT    G  +M++ED IV EDMVV
Sbjct: 481 GVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTPRRTIFGFGNAEMDNEDLIVPEDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  +DEDFVT LF+ +THTSVLFFSS G VYK
Sbjct: 541 TVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLFFSSRGIVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+PQ+RG+AL+N+L L + ER+TTIMP PEDE+SW+ L V+FAT  G VRRN
Sbjct: 601 EKVWRLPIGTPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQ+NR+GKIAMKLD  DEILSVETCT+ +D++LTT  GQC+RFP+  +RVF GRN
Sbjct: 661 KLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPVIDVRVFMGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT-EEITSLKNDS 779
           SVGVRGI++  GD+VISM I+ H +A   ER  Y+K    +RR+   D  + +   +++ 
Sbjct: 721 SVGVRGINMVDGDKVISMTILEHVEATSVERSAYIKRAINERRVAGADAEDVVIVDEDEE 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +E  +++ER  EL  +EQ +LTVSE G+GKR+SSY+FRIS R GKGIRATD +K  EIG
Sbjct: 781 EIETELTDERYAELASREQMLLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIG 840

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV   DQI+LVSD G LIRVP+  IRIA R+TKGV IF+TAK E+VVSVERI +
Sbjct: 841 KLVAAFPVKAQDQIMLVSDGGQLIRVPIEGIRIAGRSTKGVTIFNTAKGEKVVSVERISD 900

Query: 900 SEIVDEAESTE 910
            E        +
Sbjct: 901 PEDDANKLDDD 911



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 84/239 (35%), Gaps = 11/239 (4%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E C  R+D+V+T +  G   R P+   R            +   +        +  H 
Sbjct: 686 SVETCTERDDVVLT-TANGQCIRFPVIDVRVFMGRNSVGVRGINMVDGDKVISMTILEHV 744

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
                    ++ +    R   G+       +       + E           E +     
Sbjct: 745 EATSVERSAYIKRAINERRVAGADAEDVVIVDEDEEEIETELTDERYA----ELASREQM 800

Query: 648 VVFATKHGNVRRNKLSDFI-QINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKL 702
           ++  ++ G  +R+   +F         I      K     ++++      ++ I+L +  
Sbjct: 801 LLTVSEFGYGKRSSSYEFRISGRGGKGIRATDPTKATEIGKLVAAFPVKAQDQIMLVSDG 860

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           GQ +R PI  IR  AGR++ GV   + AKG++V+S+  +   + D ++     +  S  
Sbjct: 861 GQLIRVPIEGIR-IAGRSTKGVTIFNTAKGEKVVSVERISDPEDDANKLDDDSEKHSGM 918


>gi|190891755|ref|YP_001978297.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
 gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652]
          Length = 919

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 624/877 (71%), Positives = 741/877 (84%), Gaps = 1/877 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GD
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+V
Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+
Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I 
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG
Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L
Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSR 681
            L  GERITTI+P PEDE SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  
Sbjct: 602 PLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H DA+  ER  Y+K  +A+RR    D E+I  +  + + EG +S+ER +ELK +EQF+L
Sbjct: 722 GHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           TVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G 
Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 878



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       + I+L 
Sbjct: 777 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 836

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + +  E        +
Sbjct: 837 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEEETEEAVETAEGA 895

Query: 760 AQRRLISGDTEEITSLKNDSSVEG 783
                 S     +         + 
Sbjct: 896 PAAEEGSAGETPVVDGDPAGPAKE 919


>gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512]
          Length = 919

 Score =  985 bits (2546), Expect = 0.0,   Method: Composition-based stats.
 Identities = 623/877 (71%), Positives = 742/877 (84%), Gaps = 1/877 (0%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GD
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGD 241

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+V
Sbjct: 242 REQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEV 301

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           ILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+
Sbjct: 302 ILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARE 361

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I 
Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K
Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRG
Sbjct: 482 DELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRG 541

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L
Sbjct: 542 GKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINML 601

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSR 681
            L  GERITTI+P PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  
Sbjct: 602 PLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEG 661

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV
Sbjct: 662 DEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIV 721

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H DA+  +R  Y+K  +A+RR    D E+I  +  + + EG +S+ER +ELK +EQF+L
Sbjct: 722 GHVDAEPWQRAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVL 781

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           TVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G 
Sbjct: 782 TVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQ 841

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           LIRVPV  IRIASRATKGV IFSTAKDE+VVSVERI 
Sbjct: 842 LIRVPVGGIRIASRATKGVTIFSTAKDEKVVSVERIS 878



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       + I+L 
Sbjct: 777 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 836

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + +  E        +
Sbjct: 837 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEEETEEAVETAEGA 895

Query: 760 AQRRLISGDTEEITSLKNDSSVEG 783
                 S     +         E 
Sbjct: 896 PAADESSAGETPVADGDPAGPAEE 919


>gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
 gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62]
          Length = 910

 Score =  984 bits (2544), Expect = 0.0,   Method: Composition-based stats.
 Identities = 910/910 (100%), Positives = 910/910 (100%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM
Sbjct: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV
Sbjct: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA
Sbjct: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR
Sbjct: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR
Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL
Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV
Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK
Sbjct: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN
Sbjct: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN
Sbjct: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS
Sbjct: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA
Sbjct: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES
Sbjct: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900

Query: 901 EIVDEAESTE 910
           EIVDEAESTE
Sbjct: 901 EIVDEAESTE 910


>gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
 gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW]
          Length = 922

 Score =  984 bits (2543), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/909 (55%), Positives = 663/909 (72%), Gaps = 12/909 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  I +        I+ ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTSTIPTP-----SDISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G +  K Y K ARI G+VMGKYHPHG+ AIYDA+ RMAQD+S+RL LI+GQGN+GS+
Sbjct: 56  KDGGYDSTKPYKKSARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSM 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL KAA FLLDD+ K+TVDF+PNYD S  EP VL A++PN+LVNG G
Sbjct: 116 DGDPPAAMRYTEARLAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAG 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+D C A IDNP+I +D L++I+ GPDFPTGA+ILGR+GI++A
Sbjct: 176 GIAVGMATNIPTHNLGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALILGRSGIRSA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSIV+R  + IE+   DR  IVVTEIPYQVNKA + E+IAE+V EK +  I+D+R
Sbjct: 236 YHTGRGSIVMRAKTDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR A ADV+LNQL+R+T LQ+ F VNM+ALNG +PE   L  I+ A
Sbjct: 296 DESDRDGVRVVIELKRDAVADVVLNQLFRFTPLQTSFGVNMLALNGGRPELLDLKSIIAA 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FRE+V+ RRT++ L KAR+RAH LVGLA+AVAN+DE++ +IR +P+P TAR ++M R
Sbjct: 356 FVRFREQVITRRTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LID+    +   GT  LSE Q +AIL+LRL RLTGL RD I  ELN +
Sbjct: 416 EWPALDVAPLIQLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQV 475

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+  L IL+ R  LL I++ EL+ +K     PRRT I E   + + ED I REDMVV
Sbjct: 476 VDQIRHLLAILADRGLLLDILRGELVDMKARFGNPRRTTIEELEFEADVEDLIQREDMVV 535

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            V+  GY+KRVP+S YRAQ RGGKGRSG+ ++ ED V+DLF+ +THT +LFF++ G VY 
Sbjct: 536 IVTQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYT 595

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G+PQ RGKAL+N+L L +G+ ITT+MP PED++SW +L+V+FAT  G VRRN
Sbjct: 596 LKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSRGGVRRN 655

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +LSDF  I  +G IAMKL +  + +++   C++ +D+LL+T+LG+C+RFP+  IRVF+GR
Sbjct: 656 RLSDFANIRSNGLIAMKLEEEGERLIAARPCSEADDVLLSTRLGRCIRFPVGEIRVFSGR 715

Query: 720 NSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK-- 776
            S GVRGI L   GD+VI M+I+ H D   ++R  Y+K     R+ +   T+   +    
Sbjct: 716 TSTGVRGIKLVEDGDEVIGMSILRHTDYSAEQRAAYLKQARQLRQAMGEPTDADEAPDVE 775

Query: 777 -NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                    + +E   E++  E+ ILTVSE+GFGKRTS+Y++R++ R G+GI   D+ + 
Sbjct: 776 AEPVETSLVLPQELFIEMQAAEEIILTVSEQGFGKRTSAYEYRLTGRGGQGIWNMDMGER 835

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N+  A+ AVFP+++ DQ++++SD G +IR+PV++IR+  R +KGV +F    DERVVSV 
Sbjct: 836 NK--AIAAVFPISETDQVMMISDNGQVIRMPVHDIRLTGRKSKGVTLFRLGPDERVVSVA 893

Query: 896 RIRESEIVD 904
           R+ E    D
Sbjct: 894 RLAEEAAGD 902



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 13/221 (5%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E+ +++ T+ G   R P+S  R    R   G  G+SL   D V  + +            
Sbjct: 531 EDMVVIVTQGGYIKRVPVSTYRA-QARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTN 589

Query: 753 CYMKHMSAQRRLISGDTEEITS------LKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
             M +     RL  G  +             +      +      +    +  +L  + +
Sbjct: 590 RGMVYTLKVWRLPQGTPQTRGKALVNLLPLEEGDFITTVMPMPEDQASWGDLHVLFATSR 649

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  +R    DF  +N    G+ A  + +  E   L+A  P ++ D ++L +  G  IR P
Sbjct: 650 GGVRRNRLSDF--ANIRSNGLIAMKLEEEGE--RLIAARPCSEADDVLLSTRLGRCIRFP 705

Query: 867 VNEIRI-ASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905
           V EIR+ + R + GV         + V+ +  +R ++   E
Sbjct: 706 VGEIRVFSGRTSTGVRGIKLVEDGDEVIGMSILRHTDYSAE 746



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 84/237 (35%), Gaps = 5/237 (2%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
              D V+  + LG   R P+   R    G        ++  +   ++  +S      + +
Sbjct: 687 SEADDVLLSTRLGRCIRFPVGEIR-VFSGRTSTGVRGIKLVEDGDEVIGMSILRHTDYSA 745

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                Y ++  +L     +         +     E    +      E       ++  ++
Sbjct: 746 EQRAAYLKQARQLRQAMGEPTDADEAPDVEAEPVETSLVLPQELFIEMQAAEEIILTVSE 805

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R    ++    R G+    +D  +    I +V   ++ + +++ +  GQ +R P+
Sbjct: 806 QGFGKRTSAYEYRLTGRGGQGIWNMDMGERNKAIAAVFPISETDQVMMISDNGQVIRMPV 865

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             IR   GR S GV    L   ++V+S+A +    A   + I    + +A      G
Sbjct: 866 HDIR-LTGRKSKGVTLFRLGPDERVVSVARLAEEAAGDGQGIEGNGNGAADAPGPDG 921


>gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
 gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075]
          Length = 933

 Score =  983 bits (2541), Expect = 0.0,   Method: Composition-based stats.
 Identities = 593/914 (64%), Positives = 723/914 (79%), Gaps = 5/914 (0%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+       +    GI  +SI +EMQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MTDQKTPRGADGGPTGIEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS
Sbjct: 61  AHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL K AH LL+D+ K+TVDF+  YD S  EP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNL EV +G +A+IDNP IDL ALMEII GPDFPTG ++LGR+GI +
Sbjct: 181 GGIAVGMATNIPPHNLSEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGSIV+RG  +IE+   DRE I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+
Sbjct: 241 AYATGRGSIVMRGKVNIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDRQGYRVVIELKR A ADVILNQLYR+T LQ+ F  NMVALNG KPE   L  +L+
Sbjct: 301 RDESDRQGYRVVIELKRDAVADVILNQLYRFTPLQTSFGANMVALNGGKPEVMNLTDMLR 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV+FREEV+ RRTK+LL KARDRAHVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+
Sbjct: 361 AFVSFREEVITRRTKFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W + D++ LI LIDD  + I  DGT  LSE Q RAILELRL RLT LGRD+I +ELN+
Sbjct: 421 RRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNT 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +G EI + LDILSSR+R+  I+K EL +V+DE  TPRRT + +G  DMEDED I REDMV
Sbjct: 481 IGAEIIDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS+YRAQRRGGKGRSG+  ++EDFVT LF+ +THT VLFFSS G VY
Sbjct: 541 VTVSHSGYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLPIG+PQ+RGKALIN+L L QGERITTIMP PEDE+SW  L V+FAT  G VRR
Sbjct: 601 KEKVWRLPIGNPQSRGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF+Q+NR+GKIAMKL +  DEIL VETCT  +D+LLT   GQC+RF +  +RVF  
Sbjct: 661 NKLSDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS---L 775
           RNSVGVRGI++A  D++ISM+++ H DA   ER  Y+K  +++RRL +    E       
Sbjct: 721 RNSVGVRGITMAATDRIISMSVIEHVDASPAERAAYLKRAASERRLAAETAGEEEEIALT 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             +   E  +S+ R +ELK  EQ++LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK 
Sbjct: 781 NEEIGEETELSDSRYEELKAHEQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKT 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            EIG LVA FPV ++DQI+LVSD GT+IRVPVN IR ASRATKGV IF+TA+ E+VVSVE
Sbjct: 841 AEIGQLVATFPVGNDDQIMLVSDGGTVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVE 900

Query: 896 RIRESEIVDEAEST 909
           RI E +  +E E  
Sbjct: 901 RISEPQSDEEIEEA 914



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             YV+  T++G  +R+   DF                K     ++++      ++ I+L 
Sbjct: 802 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGQLVATFPVGNDDQIMLV 861

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  +R P++ IR FA R + GV   + A+G++V+S+  +    +D +          
Sbjct: 862 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEEIEEAVQGGSE 920

Query: 760 AQRRLISG 767
           A     +G
Sbjct: 921 ANPTPDAG 928


>gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 909

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 561/911 (61%), Positives = 684/911 (75%), Gaps = 3/911 (0%)

Query: 1   MTEHIISSDEE-EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D+  +   I  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G   +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGS
Sbjct: 61  MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE RL KAA  LL D+ KDTVDF+PNYD +  EP VL A++PN+LVNG 
Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D CVA+IDNP + +D L+ I+ GPDFPTG VILGR GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVILGRAGIRA 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGSIV+RG   IE    +RE +++TEIPYQVNKA M+E+IAELV+EK+I  I DL
Sbjct: 241 AYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGDL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVVIELKR A ADV+LNQLYR+T LQ+ F VNMVAL+  +P    L  +L 
Sbjct: 301 RDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLA 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV FRE VV RRTK+LL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM 
Sbjct: 361 IFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D++D++ LIDD  + I  DGT+ LS  Q RAIL+LRL RLT LGRD+IR+EL+ 
Sbjct: 421 RDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI + LDIL SR R+LGIIK EL  VK E  TPRRT I+E   ++EDED I REDMV
Sbjct: 481 LAGEIADYLDILRSRERVLGIIKTELAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGR+G+  RDEDFV+ LF+ STHT VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KEKVWRLP+ +P ARGKALINIL L QGERITTIMP PEDES+W NL V+FAT  GNVRR
Sbjct: 601 KEKVWRLPMAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF GR
Sbjct: 661 NKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L +GD+VIS+AI+ H +   DER  Y+K   A     + +     +   ++
Sbjct: 721 TSMGVRGIALGEGDKVISLAILRHVETTSDERSAYLKMRRAVAGEATAEEPAADAEAEET 780

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S    +++ER  E+   EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  G
Sbjct: 781 SGSFQLAQERYVEMSAAEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--G 838

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LV+DKG LIR PV  IRIA R+T+GV++F TA+DE VVSVE I E
Sbjct: 839 NLVASFPVEDADQIMLVTDKGQLIRCPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITE 898

Query: 900 SEIVDEAESTE 910
                   + E
Sbjct: 899 EAESGNGANGE 909


>gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 913

 Score =  983 bits (2540), Expect = 0.0,   Method: Composition-based stats.
 Identities = 560/908 (61%), Positives = 690/908 (75%), Gaps = 6/908 (0%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       +     GI  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDIEDTKPEEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  AMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D CVA+ID+P + +D L++II GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIILGRQGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY  GRGSIV+RG   I+    DRE IVV+EIPYQVNKA+M+E+IAELVREK+I  I+D
Sbjct: 241 SAYHLGRGSIVMRGKVSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR+G+RVV+ELKR A  +++LNQLY+YT LQ+ F  NMVAL+  +P+   L  +L
Sbjct: 301 LRDESDREGFRVVVELKRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGRPQVMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+AFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P  AR  LM
Sbjct: 361 TLFIAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAKDVAAMITLIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L IEI + LDIL SR+R+  IIK EL +VK E  TPRRT IVE   ++EDED I REDM
Sbjct: 481 KLAIEIADYLDILRSRARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQ+RGGKGRSG+  RDEDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+ +P ARGKALINIL L+QGERITTIMP PEDESSW +L V+FAT  G VR
Sbjct: 601 YKEKVWRLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP++ +RVF+G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVLLTAAGGQCIRFPVTDVRVFSG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITS 774
           R S+GVRGI+LAKGD+VIS++I+ H DA   ER  Y+K   A RR  +G+     E    
Sbjct: 721 RTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPE 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  + ++ E R  E+   EQF+LTV+  G+GKR+SS++FR+S R GKGIRATD +K
Sbjct: 781 ADEAAHTDLSLPEGRYVEMGAAEQFVLTVTTYGYGKRSSSFEFRVSGRGGKGIRATDPTK 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + EIG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA  E VVSV
Sbjct: 841 LGEIGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFNTADGEHVVSV 900

Query: 895 ERIRESEI 902
           E IRE   
Sbjct: 901 EHIREDGE 908



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 58/214 (27%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           ADY + +     + A  +   G  +   +    + +     E   ++L  +E  ++TVS 
Sbjct: 487 ADYLDILRSRARVQAIIKTELGAVKSEFATPRRTVIVEQEGEVEDEDLIQREDMVVTVSH 546

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKI------------------------------ 835
            G+ KR     +R   R GKG                                       
Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 836 -------NEIGA-LVAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869
                  N  G  L+ + P++  +                   ++  +  GT+ R  +++
Sbjct: 607 RLPMAAPNARGKALINILPLDQGERITTIMPLPEDESSWADLDVMFATTSGTVRRNKLSD 666

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                R+  G++     + E +V V+   E + V
Sbjct: 667 FVDVRRS--GIIAMKLGEGESIVDVQICTERDDV 698



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 28/282 (9%)

Query: 486 ECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTRIVEGL----LDMEDEDCIVREDMVV 540
           E     +    +       +   K  +    RR+ I+         + D       D V+
Sbjct: 640 EDESSWADLDVMFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGESIVDVQICTERDDVL 699

Query: 541 TVSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED----FVTDLFIVSTHTSVLFFSS 594
             +  G   R P++  R  + R     R   + + +      +   F  +      +   
Sbjct: 700 LTAAGGQCIRFPVTDVRVFSGRTSMGVRGIALAKGDRVISLSILHHFDATPAERAAYLKQ 759

Query: 595 LGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            G + +        P  +     +A    LSL +G  +                +V+  T
Sbjct: 760 SGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYVE---------MGAAEQFVLTVT 810

Query: 653 KHGNVRRNKLSDF-IQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            +G  +R+   +F +       I      KL     +++       + I+L +  GQ +R
Sbjct: 811 TYGYGKRSSSFEFRVSGRGGKGIRATDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIR 870

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            P+  IR    R S GVR  + A G+ V+S+  +     + +
Sbjct: 871 VPVEGIR-ITSRASKGVRVFNTADGEHVVSVEHIREDGENGN 911


>gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510]
 gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510]
          Length = 927

 Score =  981 bits (2537), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/909 (55%), Positives = 665/909 (73%), Gaps = 9/909 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+   +         I  ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSNTPLPP----ASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +  K Y K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S+RL LI+GQGNFGS+
Sbjct: 57  KEGGYDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSM 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL KAA  LLDD+ KDT+DF+ +YD S +EP V+ AR+PN+LVNG G
Sbjct: 117 DGDPPAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV+D C A IDNPD+ LD LME + GPDFPTG +ILGR+G + A
Sbjct: 177 GIAVGMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLILGRSGSRAA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGSI++R  +H E+   DR  I+ TEIPYQVNKA ++E+I E+V +K I  IADLR
Sbjct: 237 LQTGRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR A  DV+L QL+R+T LQ+ F VNM+ALNG +PE   L+ ++ A
Sbjct: 297 DESDRDGVRVVIELKRDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGRPELMNLLDVITA 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FRE+V+ RRT++LL KAR+RAH LVGLA+AVANLD ++ +IR +P+P  AR E+M R
Sbjct: 357 FVRFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRSAPDPVWAREEMMNR 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W   D+  LI+LID+    +   GT  LSEVQ RAIL+LRL RLTGL RD I  EL  +
Sbjct: 417 EWPVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKDV 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + L  L++R +L+GI++ EL+ +K+   TPRRT I +   + + ED I REDMVV
Sbjct: 477 TDQIADFLATLANRPKLMGILRDELVEMKERFGTPRRTEIQDLEFEADIEDLIQREDMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVS  GYVKRVPLS YRAQ+RGGKGR+G+ M+ ED V+DLF+ +THT +L FS+ G VYK
Sbjct: 537 TVSQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLLFSNRGMVYK 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP+G+PQARGKA +N+L L  GE ITT++P PEDE++W +L+VVFAT  GNVRRN
Sbjct: 597 LKVYRLPLGNPQARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHVVFATSKGNVRRN 656

Query: 661 KLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           ++SDF  I  +G IAMKL +  + ++ V TC++ +DILL T+ G+C+RFP+  +RVFAGR
Sbjct: 657 RMSDFANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCIRFPVDDVRVFAGR 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S GVRGI LA GD+V+S++I+ H DA  +ER  + K    +   + G  E         
Sbjct: 717 TSTGVRGIKLADGDEVVSLSILAHVDATPEERAAFFKMKRDEGLEMEG--EAAPEADEVP 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +++ER +ELK KEQ+ILTVS++G+GKR+SSY++R + R G+GI   ++ + N  G
Sbjct: 775 TDSVTLTQERYEELKQKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERN--G 832

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++VA FPV  N Q+++V++ G +IR+P++++R+A R T GV +F    DERVVSV  I E
Sbjct: 833 SIVAAFPVESNHQVMMVTNGGQVIRMPLHDVRVAGRKTLGVTLFRVGADERVVSVATIAE 892

Query: 900 SEIVDEAES 908
            +    A++
Sbjct: 893 EDGETGADA 901



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 4/139 (2%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLT 699
               Y++  +  G  +R+   ++    R G+    ++  +    I++       + +++ 
Sbjct: 790 QKEQYILTVSDRGYGKRSSSYEYRTAGRGGQGIWNMEMGERNGSIVAAFPVESNHQVMMV 849

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  GQ +R P+  +RV AGR ++GV    +   ++V+S+A +   D +            
Sbjct: 850 TNGGQVIRMPLHDVRV-AGRKTLGVTLFRVGADERVVSVATIAEEDGETGADAGAESGGD 908

Query: 760 AQRRLISGDTEEITSLKND 778
           A     S      T+  ND
Sbjct: 909 ANGSDGSIGDAGGTAAPND 927


>gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 965

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 548/903 (60%), Positives = 688/903 (76%), Gaps = 12/903 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  ++I DEM++SYL YA++VI+ RA+PD RDGLKPVHRRILF M + G +WNK Y 
Sbjct: 65  ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ +IYDAL RMAQD+S+RL L++GQGNFGSVDGDPPAA RYTE
Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL+D+ K+T+DF+ NYDG+ +EPVVL A  PN+LVNG  GIAVGMATNIP 
Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D C+A+IDNPDI +D L+E +  PDFPTG ++LGR G + AY TG+GS+V+RG
Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIMLGRQGARLAYHTGKGSVVVRG 304

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
               E+   DR+ I+++EIPYQVNKA+M+EKIA+LVREKRI  IADLRDESDR G RVV+
Sbjct: 305 RVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVVV 364

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R A  DV+LNQLYR++ LQ  F  NM+AL+  +PE   L   L+ FVAFREEV+ RR
Sbjct: 365 ELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGRPELMNLKQFLEIFVAFREEVISRR 424

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKARDRAHVLVGLAIAVAN+DEV+++IR +P+P +AR  LM R W A DI  LI 
Sbjct: 425 TKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPLIA 484

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LIDD  + +  DGT+ +SE Q RAILELRL RLT LGRD+I +EL  LG  I++ L IL 
Sbjct: 485 LIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSILR 544

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+R+L I++ EL ++K E  TPRRT I E   D EDED I REDMVVTVSH GY+KRVP
Sbjct: 545 SRARVLDIMRTELTAIKAEFATPRRTEIAESESDFEDEDLIQREDMVVTVSHQGYIKRVP 604

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGRSG+  +DEDFVT LF+ +THT +LFFSS G VYK KVWRLP  +PQ
Sbjct: 605 LSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLKVWRLPQSTPQ 664

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA+INIL L+ GE ITT+MP PEDE+SW++L+V+FAT+ G+VRRNKLSDF+QINR+G
Sbjct: 665 ARGKAMINILPLDHGEYITTVMPMPEDEASWDSLHVMFATRKGSVRRNKLSDFVQINRNG 724

Query: 673 KIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           KIAMK    D+ D I+ V+ CT+E+D+LLT   G+CVRFP++ +RVF+ R S GVRGI L
Sbjct: 725 KIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSSRKSTGVRGIRL 784

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG------ 783
              D++I+M+I+ H D    E   Y+K  +A RR +SG+ EE  +   ++          
Sbjct: 785 GDDDKLIAMSIMRHVDVTPAEARAYLKQAAAMRRAVSGEGEEPEAEIVEAEEGEEEAAEE 844

Query: 784 -NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +S ER  EL  +EQF+LTVSEKGFGKR+SSYD+R S R GKGI A  V+  N  G LV
Sbjct: 845 MTLSTERYSELGAREQFVLTVSEKGFGKRSSSYDYRTSGRGGKGIIAMAVTPRN--GNLV 902

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A FPV+  DQI+LV+D G LIR PV+++R A RAT+GV IF TA DERVVSVER+ E+  
Sbjct: 903 ASFPVDVQDQIMLVTDAGQLIRCPVDDVRAAGRATQGVTIFRTAPDERVVSVERVEETGS 962

Query: 903 VDE 905
            +E
Sbjct: 963 DEE 965


>gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
 gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199]
          Length = 927

 Score =  981 bits (2536), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/905 (52%), Positives = 660/905 (72%), Gaps = 3/905 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S        I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G 
Sbjct: 1   MSDISSTHHDIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +W + Y K ARI G+VMG+YHPHG++AIYDA+ RMAQD+S+RL L++GQGNFGS+DGDPP
Sbjct: 61  DWTRPYRKSARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL KAA  LL D+ K+TVD+ PNYD + +EP VL A YPN+LVNG GGIAVG
Sbjct: 121 AAMRYTEARLAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEVVD C+A++DNP I +D L+ ++ GPDFPTG +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHNLGEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLILGRSGIREAYHTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+V+RG + IE+   DR  IVVTEIPYQVNK+ ++E+I E+VR+K +  I+DLRDESDR
Sbjct: 241 GSVVMRGRAEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVV+ELKR A  +V+LNQLYRYT LQ+ F VNM+ALN  +P +  L  ++ AFV FR
Sbjct: 301 DGVRVVVELKRDAIGEVVLNQLYRYTQLQTSFGVNMLALNRGRPVQMNLRDVIFAFVEFR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ RRT++LL+KAR+RAHVL GL +A+ NLD V+ +IR +P+   ARR+L   +W A+
Sbjct: 361 EEVITRRTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPAT 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ D I +IDD  + +  +GT  LS+ Q RAIL+LRL RLTG+ R  + +E   +   IK
Sbjct: 421 DVIDFIAIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIK 480

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + LDIL+SR RL+G+++ ELL  ++     RRT I+E   + + ED I REDMVVTVS+ 
Sbjct: 481 DYLDILTSRPRLMGVLRDELLQTREAWANDRRTEIMESEFEHDIEDLIAREDMVVTVSYS 540

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPL+ YRAQ+RGGKGR+G+  RDED+V  L++ ++H+ +LFF+S G VY+ K +R
Sbjct: 541 GYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKTYR 600

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G+PQ+RG+ ++N+L L +GE I T+MP P DESSW+ L+V+FAT  G +RRN LSDF
Sbjct: 601 LPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALSDF 660

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             INR+GK AMKLD  D +++V  C + +D+LL  + G+ +RF ++ +R+F GR+S+GVR
Sbjct: 661 TNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADVRLFRGRDSLGVR 720

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LAKGD+V+SM+I+ H D +  +     + +   R+            ++ S+ +  +
Sbjct: 721 GIRLAKGDEVVSMSILHHVDYESVDGEQNERDVY-LRQAAWIRRGSGEGDEDASAPDVML 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E+R   L   E+F+L+V+EKG+GKRTS++++R++ R G+GI + DV+  N  G +V  F
Sbjct: 780 REDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQGIASMDVTAKN--GPVVTAF 837

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           PV   DQI+LV+D G +IR PV++IR+A+R T+GVV+F   +DE+VVSV  + E+   D 
Sbjct: 838 PVTPTDQIMLVTDGGQIIRCPVDDIRVAARKTQGVVLFRVGEDEKVVSVSLVGENGDDDN 897

Query: 906 AESTE 910
            E  +
Sbjct: 898 VEVAD 902



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 92/289 (31%), Gaps = 52/289 (17%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G ++R  LS +    R GK    + + + D +  +   +    VL  +  G  
Sbjct: 643 VMFATAAGTIRRNALSDFTNINRAGKR--AMKLDEGDRLIAVMPCNEGDDVLLAARSGKA 700

Query: 599 YKEKVWRLP-----------------------------------IGSPQARGKALINILS 623
            + +V  +                                     G    R   L     
Sbjct: 701 IRFQVADVRLFRGRDSLGVRGIRLAKGDEVVSMSILHHVDYESVDGEQNERDVYLRQAAW 760

Query: 624 LNQGERITTIMPFPEDESSWNNLYV---------VFATKHGNVRRNKLSDF-IQINRSGK 673
           + +G           D     + ++         +  T+ G  +R    ++ +       
Sbjct: 761 IRRGSGEGDEDASAPDVMLREDRFIALGAAEEFVLSVTEKGYGKRTSAHEYRVTGRGGQG 820

Query: 674 IA---MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           IA   +   +   +++    T  + I+L T  GQ +R P+  IRV A R + GV    + 
Sbjct: 821 IASMDVTAKNG-PVVTAFPVTPTDQIMLVTDGGQIIRCPVDDIRV-AARKTQGVVLFRVG 878

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + ++V+S+++V     D +  +      +A     +    +        
Sbjct: 879 EDEKVVSVSLVGENGDDDNVEVADEATDAATGDGPTEAGPDEEQGDATE 927


>gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
 gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1]
          Length = 915

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/902 (61%), Positives = 691/902 (76%), Gaps = 5/902 (0%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDQEDEKPGEPGGPSDIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +KKYVK AR+ G+V+GKYHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  SMYEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGDPPAA RYTE +L K+A  LLDD+ KDTVDF+ NYD S +EP VL A++PN+LVNG
Sbjct: 121 SVDGDPPAAYRYTEAKLAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNL EV+D CVA+IDNP I +D L +II GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY  GRGSI++RG   I+    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+D
Sbjct: 241 SAYHLGRGSIMMRGKVTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR GYRVVIELKR A ADV+LNQLY++T LQ+ F+ NM+AL+G +P+  TL  +L
Sbjct: 301 LRDESDRDGYRVVIELKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGRPQTMTLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE VV RRTK+LLNKARDRAH+LVGLA+AVAN+DE++R+IR SPNP +AR  LM
Sbjct: 361 TIFVAFRERVVTRRTKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A D++ +I LIDD  + +  DGT+ LS  Q +AIL+LRL RLT LGR++I +EL+
Sbjct: 421 SRDWPARDVEAIITLIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L IEI + L+IL SR+R+  IIK EL +VK E  TPRRT I+E   ++EDED I REDM
Sbjct: 481 KLKIEIADYLEILRSRARVQDIIKTELAAVKAEFGTPRRTAIIEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY KRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLPI +P +RGKALINIL L QGERITTIMP PEDESSW NL V+FAT  GNVR
Sbjct: 601 YKEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  +EI++V+ CT+ +D+LLT   GQC+RFP++ +RVF G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEEIVNVQICTERDDVLLTAAGGQCIRFPVTDVRVFTG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+LA+GD+VIS++I+ H +   DER  Y+K   A     + +    T  +  
Sbjct: 721 RTSMGVRGIALAEGDKVISLSILRHVETTSDERTAYLKMRRAMSGETTTEEPVETEGEEA 780

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +     +S+ER  E+  +EQ +LTVS  G+GKRTSSY++R + R GKGI A  V+  N  
Sbjct: 781 AGA-IQLSQERYVEMSAQEQVVLTVSVNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN-- 837

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA FPV D+DQI+LV+DKG LIR PV+ IRIA R+T+GV++F+TA DE VVSVE I 
Sbjct: 838 GKLVASFPVEDSDQIMLVTDKGQLIRCPVDGIRIAGRSTQGVIVFNTADDEHVVSVEHIG 897

Query: 899 ES 900
           E 
Sbjct: 898 EE 899



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 77/221 (34%), Gaps = 13/221 (5%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADA 746
           E+ ++  +  G   R P+SA R    R   G  G+   + D V  + +      VL   +
Sbjct: 538 EDMVVTVSHAGYTKRVPLSAYRA-QRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSS 596

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                   +  +        G                 I      E       ++  +  
Sbjct: 597 RGQVYKEKVWRLPIAAPNSRGKALINILPLEQGERITTIMPLPEDESSWANLDVMFATTG 656

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  +R    DF    R   GI A  +        +V V    + D ++L +  G  IR P
Sbjct: 657 GNVRRNKLSDFVDVRR--SGIIAMKLDDGE---EIVNVQICTERDDVLLTAAGGQCIRFP 711

Query: 867 VNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V ++R+   R + GV   + A+ ++V+S+  +R  E   + 
Sbjct: 712 VTDVRVFTGRTSMGVRGIALAEGDKVISLSILRHVETTSDE 752


>gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
 gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2]
          Length = 927

 Score =  981 bits (2535), Expect = 0.0,   Method: Composition-based stats.
 Identities = 540/917 (58%), Positives = 676/917 (73%), Gaps = 9/917 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++  +        I  VSI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MADNDDTGPGAPGSDIRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +     ++ YVKCARI G+VMGKYHPHG++AIYDAL RMAQ +S+RL LI+GQGNFGSV
Sbjct: 61  HEQNHTPDRPYVKCARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL + A  LL+D+  DTVDF+ NYDG  +EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTESRLARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+IDNP++ ++ LM  + GPDFPTG  ILGRTGI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAILGRTGIQSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++ R    +E    +RE ++VTEIPYQ+NK++++EKIA+LVREKR+  I+DLR
Sbjct: 241 YLTGRGSVLTRAKVEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A A+V+LNQL+RYT+LQS F+ NM+ALNG +PE  TL   L A
Sbjct: 301 DESDRDGMRIVIELKRDAVAEVVLNQLWRYTALQSSFACNMIALNGGRPEMLTLKDFLTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVV RRTKYLL KARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  LM R
Sbjct: 361 FVDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMAR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW A D+  L+ LI D  + +  +G   LSE Q RAILELRL RLT LGR++I   LN L
Sbjct: 421 SWPAHDMAPLVLLIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            +EI + L+IL SR RL  I+K+E+L+VK    TPRRT I++    ++DED I REDMVV
Sbjct: 481 AVEIADYLEILHSRERLFSIVKEEMLAVKAAHATPRRTIILDSATGVDDEDLIQREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPL+ YRAQRRGGKGRS +  RDEDFV  LF+ STH  VLFFSS G VYK
Sbjct: 541 TVSHHGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+ +PQARGKAL+N+L L QGERITTIMP PE+E +W  L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF Q+NR+GKIAM++D  +EI+ V+ C ++ D+LLTT  GQC+RFP++ +RVF GR+
Sbjct: 661 KLSDFAQVNRAGKIAMRIDEGEEIVDVQICGEDADVLLTTAKGQCIRFPVTDVRVFKGRD 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GVRGISL++GD+VIS+AI+ H +AD  ERI Y+K   A     S +    +       
Sbjct: 721 SMGVRGISLSEGDRVISLAILRHTEADSGERIAYLKMRRAVAGEASAEAGAESPADAQGE 780

Query: 781 VEGN------ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                     +S +R   +   EQ ILT+S  G+GKRTSSY++RI+ R GKGI A  V+ 
Sbjct: 781 DGAEDAGPQSLSPDRYARMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNP 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA  PV D D+I+LV++ G LIR PV  IR+A R T+GV++F+T  DE+VVSV
Sbjct: 841 RN--GLLVASMPVEDGDEIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTGADEQVVSV 898

Query: 895 ERIRESEIV-DEAESTE 910
           ERI E +    E E  E
Sbjct: 899 ERITEEDAARGETEEGE 915



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 4/131 (3%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETC-TQENDI 696
             S +   ++  + +G  +R    ++        G +AM ++ R+ +L         ++I
Sbjct: 798 RMSADEQIILTLSSNGYGKRTSSYEYRITGRGGKGIVAMVVNPRNGLLVASMPVEDGDEI 857

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L T  GQ +R P+  IRV AGR + GV   +    +QV+S+  +   DA   E      
Sbjct: 858 MLVTNGGQLIRCPVEGIRV-AGRGTQGVIVFNTGADEQVVSVERITEEDAARGETEEGEP 916

Query: 757 HMSAQRRLISG 767
                      
Sbjct: 917 SSDPSTEPGEA 927


>gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
 gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14]
          Length = 913

 Score =  979 bits (2530), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/905 (61%), Positives = 685/905 (75%), Gaps = 4/905 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           TE   S +     GI  VSI +EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   TEDTKSGEPPAPSGIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDAL RMAQ +S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDD+ KDTVDF+PNYD S +EP VL A++PN+LVNG GG
Sbjct: 124 GDMAAAMRYTESRLTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L+ I+ GPDFPTG +ILGR GI++AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIILGRQGIRSAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IAELVR+KRI  I+DLRD
Sbjct: 244 HLGRGSIVMRGKVAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVV+ELKR A  +V+LNQLYRYT LQ+ F  NMVAL+  +P+   L  +L  F
Sbjct: 304 ESDRDGFRVVVELKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGRPQLMNLKDLLTLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFRE VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 364 IAFRERVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  +    DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 424 WPARDVAAMITLIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + LDIL SR+R+  IIK EL +VK E  TPR+T I+E   ++EDED I REDMVVT
Sbjct: 484 IEIADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQ+RGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+ +P ARGKA+INIL L QGERITTIMP PEDESSW NL V+FAT  G VRRNK
Sbjct: 604 KVWRLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKL   + I+ V+ CT+ +D+LLT   GQC+RFP S +RVF+GR S
Sbjct: 664 LSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVLLTAGGGQCIRFPASDVRVFSGRTS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD----TEEITSLKN 777
           +GVRGI+LA+GD+VIS++I+ H DA   ER  Y+K   A RR  +G+     E       
Sbjct: 724 MGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQSGAIRRAATGEDIEPEEATPEADE 783

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            +  + ++ E R  E+   EQF+LTV+ +G+GKR+SS++FR+S R GKGIRA+D +K+ E
Sbjct: 784 AAHTDLSLPEGRYVEMGAAEQFVLTVTTQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGE 843

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           IG LVA FPV  +DQI+LVSD G LIRVPV  IRI SRA+KGV +F+TA+ E VVSVE I
Sbjct: 844 IGHLVAGFPVEMSDQIMLVSDGGQLIRVPVEGIRITSRASKGVRVFTTAEGEHVVSVEHI 903

Query: 898 RESEI 902
           RE   
Sbjct: 904 REENE 908



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 58/214 (27%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           ADY + +     + A  +   G  +   +    + +     E   ++L  +E  ++TVS 
Sbjct: 487 ADYLDILRSRARVQAIIKTELGAVKAEFATPRKTVILEQEGEVEDEDLIQREDMVVTVSH 546

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL------------------------ 841
            G+ KR     +R   R GKG       + + +  L                        
Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 842 --------------VAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869
                         + + P+   +                   ++  +  GT+ R  +++
Sbjct: 607 RLPMAAPNARGKAMINILPLEQGERITTIMPLPEDESSWANLDVMFATTSGTVRRNKLSD 666

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                R+  G++     + E +V V+   E + V
Sbjct: 667 FVDVRRS--GIIAMKLGEGEAIVDVQICTERDDV 698



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 28/282 (9%)

Query: 486 ECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTRIVEGLLDMEDEDCI----VREDMVV 540
           E     ++   +       +   K  +    RR+ I+   L   +           D V+
Sbjct: 640 EDESSWANLDVMFATTSGTVRRNKLSDFVDVRRSGIIAMKLGEGEAIVDVQICTERDDVL 699

Query: 541 TVSHLGYVKRVPLSVYR------AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             +  G   R P S  R      +    G   +         +   F  +      +   
Sbjct: 700 LTAGGGQCIRFPASDVRVFSGRTSMGVRGIALAEGDRVISLSILHHFDATPAERAAYLKQ 759

Query: 595 LGFVYKEKVWR--LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            G + +        P  +     +A    LSL +G  +                +V+  T
Sbjct: 760 SGAIRRAATGEDIEPEEATPEADEAAHTDLSLPEGRYVE---------MGAAEQFVLTVT 810

Query: 653 KHGNVRRNKLSDF-IQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707
             G  +R+   +F +       I      KL     +++       + I+L +  GQ +R
Sbjct: 811 TQGYGKRSSSFEFRVSGRGGKGIRASDPTKLGEIGHLVAGFPVEMSDQIMLVSDGGQLIR 870

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            P+  IR    R S GVR  + A+G+ V+S+  +   + + +
Sbjct: 871 VPVEGIR-ITSRASKGVRVFTTAEGEHVVSVEHIREENENGN 911


>gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
 gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831]
          Length = 910

 Score =  977 bits (2525), Expect = 0.0,   Method: Composition-based stats.
 Identities = 555/913 (60%), Positives = 683/913 (74%), Gaps = 8/913 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+  
Sbjct: 1   MAENDPTGAAPPASDIRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSA 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G    +KYVK ARI G+V+G YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSV
Sbjct: 61  FESGHLPERKYVKSARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K A  LL D+ K+TVDF PNYD S +EP VL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTESRLAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE++D CVA+ID+P + ++ L EI+ GPDFPTG +ILGR G + A
Sbjct: 181 GIAVGMATNIPPHNLGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMILGRAGTRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGS+++R  SH+E+   +RE ++ TEIPYQVNKA ++EKIAELV+EKR+  I+DLR
Sbjct: 241 YATGRGSVIMRAKSHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V+E+KR A ADV+LNQLYR+T LQS F  NMVALNG +PE   L  +L+A
Sbjct: 301 DESDRSGMRIVVEIKRDAMADVVLNQLYRFTPLQSSFGCNMVALNGGRPELMNLKDLLQA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVV RRTK+LL KAR+RAHVL GLAIAVAN+DEV+R+IR SP+P  AR  LM R
Sbjct: 361 FVDFREEVVSRRTKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT LGRD++ +EL +L
Sbjct: 421 DWPAHDIAPLIALVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI + LDIL SR+R+ GI+K EL  V+++  TPR+T IV+    +EDED I REDMVV
Sbjct: 481 ADEIADYLDILRSRARIQGIVKGELAEVREQFATPRKTEIVDFDGSVEDEDLIAREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLFFSS G  YK
Sbjct: 541 TVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           EKVWRLP+ +P ARGKAL+NIL L +  ERITTIMP PEDE+SW  L V+FAT  GNVRR
Sbjct: 601 EKVWRLPMAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF  +NR+GKIAMKLD  D I+ VE C  + ++LLTT LGQC+RFP+  +RVF GR
Sbjct: 661 NKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +S GVRGI L K D+VISM I+   DA  +ER  Y+K    +R +     E   +   D 
Sbjct: 721 DSTGVRGILLGKDDKVISMTILNAFDATAEERAGYLK---MRRAVTGESEENGDAEAEDG 777

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    IS +R  E+   EQ++LT+SE+GFGKR+SS+++R S R GKGI A  V+  N  G
Sbjct: 778 AEAAAISLDRYNEMGAAEQYVLTLSERGFGKRSSSFEYRTSGRGGKGITAMRVNARN--G 835

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +LVA FPV  +DQI+LV+D G LIRVPV++IRI  RA++GV +F+TAKDE+VVSVE I  
Sbjct: 836 SLVASFPVEASDQIMLVTDGGQLIRVPVDDIRIVGRASQGVTVFNTAKDEKVVSVEHIEG 895

Query: 900 SEIVDEA--ESTE 910
            +   EA  E  E
Sbjct: 896 EDEGAEAGPEGGE 908


>gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
 gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43]
          Length = 945

 Score =  976 bits (2523), Expect = 0.0,   Method: Composition-based stats.
 Identities = 595/901 (66%), Positives = 717/901 (79%), Gaps = 5/901 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S      GI  VSI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDQKTPS-GPITPGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  WN+KYVK +RI G+VMGKYHPHG+ +IYDA+ RMAQ WS+  +LI+GQGNFGS+
Sbjct: 60  HEGGYHWNRKYVKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K AH +++D+ KDTVDF+  YD S +EP VL AR+PN+LVNG G
Sbjct: 120 DGDPPAAMRYTESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GC+A++DNP IDL  LM+II GPDFPT  +ILG+ GI+ A
Sbjct: 180 GIAVGMATNIPPHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIILGQAGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS+++RG  H+E    DRE I++TE+PYQVNK++M+EK+AELVR+KRI  I+DLR
Sbjct: 240 FETGRGSVIMRGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKR A+ADVI+NQLYRYT LQS F VNMVALNG KPE   LI +LKA
Sbjct: 300 DESDRQGYRVVIELKRDANADVIINQLYRYTPLQSSFGVNMVALNGGKPELMNLIDMLKA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE+V+ RRTKYLL KAR+RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM R
Sbjct: 360 FVSFREDVITRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LIDD  + I  DGT  LSE Q RAILELRLARLT LGRD+I +EL  +
Sbjct: 420 RWPAMDVEVLIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKI 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+ L+IL SR R+  I+K EL++V+DE   PRRT I EG  DM+DED I REDMVV
Sbjct: 480 GEEIKDFLEILGSRIRVQQIVKDELIAVRDEFGVPRRTVIAEGGPDMDDEDLIAREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPL+ YRAQRRGGKGRSG+  +DEDFVT LF+ +THT VLFFSS G VYK
Sbjct: 540 TVSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIG+P +RGKALIN+L L +GERIT+IMP PEDE+S   L V+F+TK G VRRN
Sbjct: 600 EKVWRLPIGTPTSRGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+Q+NR+GKIAMKLD   DEIL+VETC + +D+LLTT LGQC+RF +  +RVFAGR
Sbjct: 660 KLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDVRVFAGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL---ISGDTEEITSLK 776
           NSVGVRGI+L +GD +ISM IV H DA+  ER  Y+K   A+RR      GD EE+  + 
Sbjct: 720 NSVGVRGINLGQGDTIISMTIVHHVDAEASERAAYLKRAMAERRAAIGEEGDVEEVALVG 779

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D+  +G +S+ER  ELK +EQFILTVSEKG+GKR+SSY+FRIS R GKGIRATD SK  
Sbjct: 780 EDAVEDGELSDERYAELKAREQFILTVSEKGYGKRSSSYEFRISGRGGKGIRATDTSKTG 839

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           EIG L+A FPV   DQI++VSD G +IRVPV  IR+ASRATKGV IF+TAKDERVVSV+R
Sbjct: 840 EIGPLIAAFPVEPGDQIMMVSDGGQVIRVPVGGIRMASRATKGVTIFNTAKDERVVSVDR 899

Query: 897 I 897
           I
Sbjct: 900 I 900



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 87/256 (33%), Gaps = 10/256 (3%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D V+  + LG   R  +   R     G+   GV   +      +  ++    V   +S  
Sbjct: 694 DDVLLTTALGQCIRFSVDDVRV--FAGRNSVGVRGINLGQGDTIISMTIVHHVDAEASER 751

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y ++       +    G      L          +      E      +++  ++ G 
Sbjct: 752 AAYLKRAMAERRAAIGEEGDVEEVALVGEDAVEDGELSDERYAELKAREQFILTVSEKGY 811

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI------LSVETCTQENDILLTTKLGQCVRFPI 710
            +R+   +F +I+  G   ++     +       ++       + I++ +  GQ +R P+
Sbjct: 812 GKRSSSYEF-RISGRGGKGIRATDTSKTGEIGPLIAAFPVEPGDQIMMVSDGGQVIRVPV 870

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             IR  A R + GV   + AK ++V+S+  +   ++D +                + D  
Sbjct: 871 GGIR-MASRATKGVTIFNTAKDERVVSVDRINEPESDEELEEGVEGETVEGVADAAPDAN 929

Query: 771 EITSLKNDSSVEGNIS 786
              +    S+ E   S
Sbjct: 930 GTPAPDASSAGEEPQS 945


>gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5]
          Length = 917

 Score =  976 bits (2522), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/916 (60%), Positives = 685/916 (74%), Gaps = 12/916 (1%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       + +    I  +SI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILF
Sbjct: 1   MSDKDDEKPGEPKAPSDIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG
Sbjct: 121 SVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+I++P + +D L+ II GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSIV+RG   IE    DRE I+V+EIPYQVNKA M+E+IAELVREK+I  I+D
Sbjct: 241 LAYHTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P    L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPHLMNLRDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTKYLL KARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TLFVAFREQVVTRRTKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + LDIL SR+R+  I+K EL++VK E  TPR+T I+E   ++EDED I REDM
Sbjct: 481 KLALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTMIIEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLPI  P  RGKALINIL L QGERITTIMP PEDE SW  L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLT   GQC+RFP+  +RVF G
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTAAGGQCIRFPVPDVRVFTG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GVRGI+LA GD+VIS+ I+ H +A   ER  Y+K   A RR   G+  +++ +   
Sbjct: 721 RTSMGVRGIALASGDKVISLCILRHFEATPAERTTYLKQSGAFRRAAIGEDTDVSEVSEV 780

Query: 779 SSVEG--------NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           ++            +S +R  E+   EQF+LT+SE G+GKRTSS+++R + R GKGI A 
Sbjct: 781 TAEAESEEAEGLTALSSDRYAEMSASEQFVLTISENGYGKRTSSFEYRTTGRGGKGIGAM 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V+  N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F TA DE+
Sbjct: 841 SVNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFDTADDEK 898

Query: 891 VVSVERIRESEIVDEA 906
           VVSVE I E+E  +  
Sbjct: 899 VVSVEHIPEAEEAENG 914


>gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
 gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2]
          Length = 925

 Score =  974 bits (2518), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/922 (60%), Positives = 686/922 (74%), Gaps = 18/922 (1%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       + +    I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILF
Sbjct: 1   MSDKDDEKPGEPQAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFG
Sbjct: 61  GMYENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD PAA RYTE RL K A  LLDDL KDTVD++ NYDGSF EP VL A++PN+LVNG
Sbjct: 121 SVDGDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D C+A+ID+P + +D L  II GPDFPTG +ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIILGRAGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IA+LVREK+I  I+D
Sbjct: 241 LAYHTGRGSIVMRGKVEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L
Sbjct: 301 LRDESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FVAFRE+VV RRTKYLLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM
Sbjct: 361 TLFVAFREQVVTRRTKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R W A+D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+
Sbjct: 421 SRDWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELD 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L +EI + LDIL SR+R+  I+K EL++VK E  TPR+T I+E   ++EDED I REDM
Sbjct: 481 KLALEIADYLDILRSRARVQTIVKDELIAVKTEFATPRKTVIIEQEGEVEDEDLIQREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G V
Sbjct: 541 VVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLPI  P  RGKALINIL L QGERITTIMP PEDE SW  L V+FAT  GNVR
Sbjct: 601 YKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDEQSWAALDVMFATTGGNVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------ 712
           RNKLSDF+ + RSG IAMKLD  + I+ V+ CT+ +D+LLTT  GQC+RFP+S       
Sbjct: 661 RNKLSDFVDVRRSGIIAMKLDDGEAIVDVQICTERDDVLLTTANGQCIRFPVSDQRDGKE 720

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +RVF GR+S+GVRGI+LA  D+VIS++I+ H DA  +ER  Y++  +A RR    +  
Sbjct: 721 FGVRVFQGRSSMGVRGIALAPEDKVISLSILRHLDAGSEERAAYLRRANAVRRGGVEERA 780

Query: 771 EITSLKNDSSVEG------NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +         E        + E+R  E+   EQF+LT+SE G+GKRTSS+++R +NR G
Sbjct: 781 AVEDEAAGVEGEDASVGAIELGEQRYVEMSASEQFVLTISENGYGKRTSSFEYRTTNRGG 840

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KGI A  V+  N  G LVA FPV D+DQI+LV+D G LIR PV  IR+A R+T+GV++F 
Sbjct: 841 KGIVAMSVNNRN--GKLVASFPVEDSDQIMLVTDNGQLIRCPVEGIRVAGRSTQGVIVFD 898

Query: 885 TAKDERVVSVERIRESEIVDEA 906
           TA DE+VVSVE I E+E  +  
Sbjct: 899 TADDEKVVSVEHIPEAEETENG 920


>gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18]
          Length = 927

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 556/910 (61%), Positives = 681/910 (74%), Gaps = 13/910 (1%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M 
Sbjct: 4   TDDNKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMY 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVD
Sbjct: 64  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GG
Sbjct: 124 GDSAAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+ID+P + +D L +I+ GPDFPTG +ILGR GI+ AY
Sbjct: 184 IAVGMATNIPPHNLGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIILGRAGIRLAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSIV+RG   IE T  DRE I+++EIPYQVNKA M+E+IAELVREK+I  I+DLRD
Sbjct: 244 HTGRGSIVMRGKVAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVVIEL+R A  DV+LNQLYR+T LQ+ F  NMVAL+  +P+   L  +L+ F
Sbjct: 304 ESDRDGFRVVIELRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGRPQLMNLKDLLRLF 363

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           VAFRE+VV RRTK+LLNKARDRAHVLVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 364 VAFREQVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARD 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  + + +DGT  LS  Q +AIL+LRLARLT LGR++I  EL+ L 
Sbjct: 424 WEAKDVAAMITLIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLA 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + L+IL SR+R+  IIK+EL +VK E  TPR+T I+E   ++EDED I REDMVVT
Sbjct: 484 IEIADYLEILRSRARVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQRRGGKGRSG+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 544 VSHAGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKE 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLPI  P  RGKALINIL L QGERITTIMP PEDESSW  L V+FAT  G VRRNK
Sbjct: 604 KVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNK 663

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKLD  + I+ V+ CT  +D+LLT   GQC+RF ++ +RVF  R S
Sbjct: 664 LSDFVDVRRSGIIAMKLDEGEAIVDVQICTDRDDVLLTAAGGQCIRFAVTDVRVFQSRAS 723

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE---------- 771
           +GVRG++LA GDQVIS+ I+ H DA+  ER  Y+K   A RR  +G+  E          
Sbjct: 724 MGVRGMALANGDQVISLTILRHFDANPAERSTYLKQSGAIRRAATGEEAEAVEGSELAAE 783

Query: 772 -ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              +   +     ++S +R  E+   EQF+LT+SE GFGKRTSS+++R + R GKGI A 
Sbjct: 784 VADAEPEEVDAIASLSPDRYAEMSANEQFVLTLSENGFGKRTSSFEYRTTGRGGKGIVAM 843

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V+  N  G LVA FPV + DQI+LV+DKG LIR PV  IRI  R+T+GV +F+TA+DE 
Sbjct: 844 AVNARN--GKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEH 901

Query: 891 VVSVERIRES 900
           VVSVERI E 
Sbjct: 902 VVSVERIGED 911



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 79/216 (36%), Gaps = 13/216 (6%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI------VLHADA 746
           E+ ++  +  G   R P+S  R    R   G  G+   + D V  + +      VL   +
Sbjct: 538 EDMVVTVSHAGYVKRVPLSTYRA-QRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSS 596

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                   +  +        G                 I      E    E  ++  + +
Sbjct: 597 RGQVYKEKVWRLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTR 656

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  +R    DF    R   GI A  + +     A+V V    D D ++L +  G  IR  
Sbjct: 657 GTVRRNKLSDFVDVRR--SGIIAMKLDEGE---AIVDVQICTDRDDVLLTAAGGQCIRFA 711

Query: 867 VNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESE 901
           V ++R+  SRA+ GV   + A  ++V+S+  +R  +
Sbjct: 712 VTDVRVFQSRASMGVRGMALANGDQVISLTILRHFD 747



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 58/214 (27%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           ADY E +     +    +      +   +    +++     E   ++L  +E  ++TVS 
Sbjct: 487 ADYLEILRSRARVQTIIKEELAAVKAEFATPRKTTIIEQEGEVEDEDLIQREDMVVTVSH 546

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKI------------------------------ 835
            G+ KR     +R   R GKG       +                               
Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606

Query: 836 -------NEIGA-LVAVFPVNDND------------------QIILVSDKGTLIRVPVNE 869
                  N  G  L+ + P+   +                   ++  + +GT+ R  +++
Sbjct: 607 RLPIAPPNGRGKALINILPLEQGERITTIMPLPEDESSWAELDVMFATTRGTVRRNKLSD 666

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                R+  G++     + E +V V+   + + V
Sbjct: 667 FVDVRRS--GIIAMKLDEGEAIVDVQICTDRDDV 698


>gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 909

 Score =  973 bits (2515), Expect = 0.0,   Method: Composition-based stats.
 Identities = 793/909 (87%), Positives = 857/909 (94%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI+ +DEE EKGITSVSI +EMQNSYLTYAINVILGRAIPDLRDGLK VHRRILFGM
Sbjct: 1   MTEHIVPNDEEGEKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS+
Sbjct: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA++PN+LVNG G
Sbjct: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++GC+A+IDNPDIDLD +M+II GPDFPTGA+ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGSIVIRGV+HIEKT GDRE+I+VTEIPYQVNK+AMLEKIAELVREKRIVDI+DLR
Sbjct: 241 YATGRGSIVIRGVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI ILK 
Sbjct: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIEILKN 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEVV RRTKYLLNKARDRAHVLVGLAIAV+NLDEVVRIIRFSPNPE+ARRELMQR
Sbjct: 361 FIAFREEVVGRRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +WNA DIKDLIDLIDDSSYTI SDG MYLSEVQTRAILELRLARLTGLGRDDIR+ELNSL
Sbjct: 421 NWNAVDIKDLIDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G EIK+CL+ILSSRSRLL IIKQEL  +KDELDTPRRT IV+GLLDMEDEDCIVREDMVV
Sbjct: 481 GTEIKDCLEILSSRSRLLNIIKQELKFIKDELDTPRRTEIVDGLLDMEDEDCIVREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GYVKRVPLS+YRAQRRGGKGRSGVV R+EDFVTDLFIV+THT VLFFSSLGFVYK
Sbjct: 541 TVSHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLPIGSPQ+RGKALINILSL QGERITTIMP PEDESS ++LYVVFATK GNVRRN
Sbjct: 601 EKVWRLPIGSPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+Q+NRSGKIAMKLD  DEILSVETC + ND+LLTTKLGQC+RF I+ +RVF+GRN
Sbjct: 661 KLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDVRVFSGRN 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           SVGVRGI LA+ DQVISMAIVLHADADYDER+CYMK+M++ RRLI+ D +E   LKNDSS
Sbjct: 721 SVGVRGIVLAEDDQVISMAIVLHADADYDERVCYMKYMASHRRLIASDIDEGGVLKNDSS 780

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +EG ISEERC+ELK KEQFILTVSEKGFGKRTSSYDFRIS+R GKGI ATD SK++EIG 
Sbjct: 781 IEGKISEERCKELKSKEQFILTVSEKGFGKRTSSYDFRISSRGGKGILATDTSKMDEIGP 840

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++ FPVND DQIILVSDKGTLIRVPVN+IRIASR+TKGVVIFSTAKDERVVSVERI ES
Sbjct: 841 LISAFPVNDKDQIILVSDKGTLIRVPVNDIRIASRSTKGVVIFSTAKDERVVSVERISES 900

Query: 901 EIVDEAEST 909
           +I+D +E  
Sbjct: 901 DIIDVSEEE 909


>gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4]
 gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4]
 gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1]
 gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4]
 gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens AM1]
 gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium
           extorquens DM4]
          Length = 911

 Score =  972 bits (2513), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/901 (61%), Positives = 674/901 (74%), Gaps = 7/901 (0%)

Query: 1   MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M +               I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL
Sbjct: 1   MADDNDQPGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F   + G    ++YVK ARI G+V+GKYHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNF
Sbjct: 61  FAAHESGHLPERRYVKSARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGDP AA RYTE RL K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVN
Sbjct: 121 GSVDGDPAAAMRYTESRLAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGE++D C+A+ID+P + ++AL EI+ GPDFPTG +ILGR G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLILGRAGT 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AYATGRGSI++R  SHIE+   +RE ++ TEIPYQVNKA ++EKIAELV+EKR+  I+
Sbjct: 241 RQAYATGRGSIIMRAKSHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           DLRDESDR G R+V+E+KR A A+V+LNQLYRYT LQS F  NMVALNG +PE   L  +
Sbjct: 301 DLRDESDRDGMRIVVEIKRDAMAEVVLNQLYRYTPLQSSFGCNMVALNGGRPELMNLKDL 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L AF  FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR  L
Sbjct: 361 LLAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREAL 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R W A DI  LI L+DD  Y +  DGT  LSE+Q RAIL+LRL RLT LGRD++ +EL
Sbjct: 421 MARDWPAHDIAPLIALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDEL 480

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  EI + LDIL SR R+  I+K EL  V+    TPR+T I++    +EDED I RED
Sbjct: 481 KKLADEIADYLDILRSRVRIQAIVKTELAEVRALFATPRKTEIIDSDFSVEDEDLIARED 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTVSH GYVKRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ STHT VLFFS  G 
Sbjct: 541 MVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQ 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGN 656
            YKEKVWRLP+ +P ARGKAL+NIL L    ERI+TIMP PEDE+SW+ L V+FAT  GN
Sbjct: 601 AYKEKVWRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDETSWDTLDVMFATASGN 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRRNKLSDF  +NR+GKIAMKLD  D I+ VE C  E ++LLTT LGQC+RFP+  +RVF
Sbjct: 661 VRRNKLSDFTTVNRNGKIAMKLDPGDHIVHVEICRPEQNVLLTTALGQCIRFPVEDVRVF 720

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GVRGI+LA+ D+VISMAI+   DA  +ER  Y+K   A     +G+ E   +  
Sbjct: 721 KGRDSTGVRGINLAQDDKVISMAILNAFDASPEERAGYLKMRRAVIGD-AGEAEAEPAEA 779

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++S    IS ER  E+   EQF+LT+S++GFGKR+SSY++R S R GKGI A  V+  N
Sbjct: 780 EEASEASAISLERYNEMGAAEQFVLTLSDRGFGKRSSSYEYRTSGRGGKGITAMRVNARN 839

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+T K ERVVSVE 
Sbjct: 840 --GNLVASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEH 897

Query: 897 I 897
           I
Sbjct: 898 I 898


>gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099]
          Length = 906

 Score =  972 bits (2512), Expect = 0.0,   Method: Composition-based stats.
 Identities = 591/889 (66%), Positives = 716/889 (80%), Gaps = 4/889 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ+SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGK
Sbjct: 1   MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+A+IYDAL RMAQDWSLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+
Sbjct: 61  YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+  YD S  EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A
Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP IDL ALMEII GPDFPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   DRE
Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGNDRE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TE+PYQVNKA+M+EK+AELVR+KRI  I+D+RDESDRQGYRVVIELKR A ADVIL
Sbjct: 241 SIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F  NMVALNG KPE  TL  +LKAFV+FREEV+ RRTK+LL KARDRA
Sbjct: 301 NQLYRFTPLQTSFGANMVALNGGKPELLTLTDMLKAFVSFREEVITRRTKFLLRKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HVLVGLAIAVAN+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I +D
Sbjct: 361 HVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRINAD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRL RLT LGRD+I +ELNS+G EI + LDILSSR+R+  I+K E
Sbjct: 421 GTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVKDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L +V+DE  TPRRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGK
Sbjct: 481 LAAVRDEFGTPRRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GRSG+  ++EDFVT LF+ +THT VLFFSS G VYKEKVWRLPIG+PQ+RGKALIN+L L
Sbjct: 541 GRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQSRGKALINMLPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDE 683
            QGERITTIMP PEDE+SW  L V+FAT  G VRRNKLSDF+Q+NR+GKIAMKL +  DE
Sbjct: 601 EQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDE 660

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           IL VETCT  +D+LLT   GQC+RF +  +RVF  RNSVGVRGI++A+ D++ISM+++ +
Sbjct: 661 ILGVETCTDNDDVLLTASSGQCIRFSVGDVRVFQSRNSVGVRGITMAETDRIISMSVIEN 720

Query: 744 ADADYDERICYMK---HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            DA   ER  Y+K            +G+ EEI     +   E  +S+ER + LK  EQ++
Sbjct: 721 VDASPAERAAYLKRAAAERRLAAGANGEEEEIALTNEEIGEEAELSDERYEFLKAHEQYV 780

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LTV+E G+GKR+SSYDFR++ R GKGIRATDVSK  EIG LVA FPV ++DQI+LVSD G
Sbjct: 781 LTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLVSDGG 840

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           T+IRVPVN IR ASRATKGV IF+TA+ E+VVSVERI E +  +E+E T
Sbjct: 841 TVIRVPVNGIRFASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEET 889



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             YV+  T++G  +R+   DF                K      +++      ++ I+L 
Sbjct: 777 EQYVLTVTEYGYGKRSSSYDFRLTGRGGKGIRATDVSKTAEIGRLVATFPVGNDDQIMLV 836

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  +R P++ IR FA R + GV   + A+G++V+S+  +    +D +          
Sbjct: 837 SDGGTVIRVPVNGIR-FASRATKGVTIFNTAEGEKVVSVERISEPQSDEESEETVEGGTE 895

Query: 760 AQRRLISGDTE 770
           +       + E
Sbjct: 896 SAPDAGPENAE 906


>gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571]
          Length = 917

 Score =  970 bits (2508), Expect = 0.0,   Method: Composition-based stats.
 Identities = 541/901 (60%), Positives = 678/901 (75%), Gaps = 7/901 (0%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++            I  VSITDE+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MADNDTPPQGGATPSDIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G EWNK+Y K AR+ G+V+GKYHPHGN ++YDAL RM Q +S+R+ LI+GQGNFGS
Sbjct: 61  MHENGYEWNKQYRKSARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE RL+K    LLD+LG+DTVDF+ NYD S  EP VL AR+PN+LVNG 
Sbjct: 121 VDGDPPAAMRYTEVRLEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+DG VA++D+P +D + L++ I GPDFPTGA+I+GR+GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIMGRSGIRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI++R  + IE    +RE I++TEIPYQVNKA M+EKIAELVR+KR+  IA++
Sbjct: 241 AYMTGRGSIMMRARATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIE+KR A ADV+LN LYR T LQ+ F VNMVAL+G +P   TL   L 
Sbjct: 301 RDESDREGMRVVIEVKRDAQADVVLNNLYRMTPLQTSFGVNMVALSGGRPAVMTLHDTLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+AFREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DE++++IR +P+P TAR  LM+
Sbjct: 361 AFIAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  L+ LI D  + + SDGT  LS  Q RAIL+LRL RLT LGRD+I +EL+ 
Sbjct: 421 RHWPAKDVASLVALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L +EI E L+IL+SR R+  II++ELL+++ E +TPRRT I EG  D++DED I REDMV
Sbjct: 481 LALEIAEYLEILASRPRMRAIIREELLALRAEFNTPRRTEITEGFGDLDDEDLIAREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GYVKRVPLS YRAQRRGGKGRS +  RDEDFVT LF+ STH  VLFFSS G VY
Sbjct: 541 VTVSHAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP  +PQARGKALINIL L   ERIT+I+P PE+    +   ++FAT  G VRR
Sbjct: 601 KLKVWRLPAAAPQARGKALINILPLQPDERITSIVPLPENLEEHSLWQIMFATTGGTVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N L+DF Q+NR+GKIAMKL+  ++I SV+ C +  D+LLTT  G C+RFP+  +R+F GR
Sbjct: 661 NALADFSQVNRNGKIAMKLEEGEQIASVQLCNEHQDVLLTTANGACIRFPVPEVRLFKGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +SVGVRGI L +GD++ISMAI+ H DA  +ER+ Y++      R  + +   I       
Sbjct: 721 DSVGVRGIRLEEGDRLISMAIINHTDAAAEERVQYLRQS----RAQAAEDAPIELEGEAP 776

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + EG +   +  E++  EQFILT+SE G+GKRTSSY++R++ R GKGI A  V++ N  G
Sbjct: 777 AAEGKLDPVKFLEMETNEQFILTLSENGYGKRTSSYEYRVTGRGGKGIVAMAVNERN--G 834

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVA FPV D DQI+LV+D G LIR PVN IRI  R+++GV++F TA DERVVSVE I E
Sbjct: 835 KLVASFPVRDADQIMLVTDGGQLIRCPVNGIRIVGRSSQGVIVFDTAADERVVSVEHISE 894

Query: 900 S 900
            
Sbjct: 895 D 895



 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 80/235 (34%), Gaps = 13/235 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               V+  +  G   R P+   R     G+   GV     +    L  ++        + 
Sbjct: 693 EHQDVLLTTANGACIRFPVPEVR--LFKGRDSVGVRGIRLEEGDRLISMAIINHTDAAAE 750

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
               Y  +             +     L          + P    E   N  +++  +++
Sbjct: 751 ERVQYLRQS-------RAQAAEDAPIELEGEAPAAEGKLDPVKFLEMETNEQFILTLSEN 803

Query: 655 GNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R    ++    R   G +AM ++    ++++       + I+L T  GQ +R P++
Sbjct: 804 GYGKRTSSYEYRVTGRGGKGIVAMAVNERNGKLVASFPVRDADQIMLVTDGGQLIRCPVN 863

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            IR   GR+S GV     A  ++V+S+  +   +A         +  +      +
Sbjct: 864 GIR-IVGRSSQGVIVFDTAADERVVSVEHISEDEAGEATEGEGEETGAPDESPEA 917


>gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53]
          Length = 918

 Score =  970 bits (2507), Expect = 0.0,   Method: Composition-based stats.
 Identities = 553/914 (60%), Positives = 674/914 (73%), Gaps = 9/914 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     +      I  VSI DEM+ SYL YA++VI+ RA+PD RDGLKPVHRRILFGM 
Sbjct: 6   TDDRKPGEPPAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMY 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G EWNK Y K AR  G+V+GKYHPHG+ ++YDA+ RMAQD+S+R+ LI+GQGNFGSVD
Sbjct: 66  ENGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE RL K A  LLDDL KDTVD++ NYDGSF+EP VL A++PN+LVNG GG
Sbjct: 126 GDAPAAMRYTESRLTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGG 185

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGEV+D CVA+I++P + +D L +II GPDFPTG +ILGR GI+ AY
Sbjct: 186 IAVGMATNIPPHNLGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIILGRAGIRLAY 245

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSIV+RG   IE    DRE I+++EIPYQVNKA M+E+IAELVREK+I  I+DLRD
Sbjct: 246 HTGRGSIVMRGKVSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRD 305

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G+RVVIEL+R A ADV+LNQLYR+T LQ+ F  NMVAL+  +P    L  +L  F
Sbjct: 306 ESDRDGFRVVIELRRDAVADVVLNQLYRFTPLQTNFGANMVALDAGRPLLMNLKDLLTLF 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           VAFRE+VV RRTK+LLNKARDRAH+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R 
Sbjct: 366 VAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRD 425

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  +I LIDD  + +  DGT  LS  Q +AIL+LRL RLT LGR++I  EL+ L 
Sbjct: 426 WPAQDVAAMITLIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLA 485

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           +EI + L+IL SR+R+  IIK EL +VK E  TPRRT I+E   ++EDED I REDMVVT
Sbjct: 486 VEIADYLEILRSRARVQTIIKDELAAVKAEFATPRRTEIIEQEGEVEDEDLIQREDMVVT 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VSH GYVKRVPLS YRAQRRGGKGR+G+  R+EDFV+ LF+ STHT VLFFSS G VYKE
Sbjct: 546 VSHAGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKE 605

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KVWRLP+  P  RGKALINIL L QGERI TIMP PEDESSW    V+FAT  G VRRNK
Sbjct: 606 KVWRLPLAPPNGRGKALINILPLEQGERINTIMPLPEDESSWAEFDVMFATTRGTVRRNK 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+ + RSG IAMKLD  + I+ V+ CT  +D+LLT   GQC+RF ++ +RVF  R S
Sbjct: 666 LSDFVDVRRSGIIAMKLDDGEAIVDVQICTDRDDVLLTAAEGQCIRFAVTDVRVFQSRAS 725

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG-------DTEEITS 774
           +GVRG++LA GDQVIS+ I+ H DA   ER  Y+K   A RR  +G         E    
Sbjct: 726 MGVRGMALANGDQVISLTILRHFDATPAERTTYLKQSGAIRRAATGEEVEPSEVVEAAVE 785

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + ++     +S ER  E+   EQF+LT+SE GFGKRTSS+++R + R GKGI A  V+ 
Sbjct: 786 PEEETDGLAALSPERYAEMSANEQFVLTISENGFGKRTSSFEYRTTGRGGKGIVAMSVNA 845

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G LVA FPV + DQI+LV+DKG LIR PV  IRI  R+T+GV +F+TA+DE VVSV
Sbjct: 846 RN--GKLVASFPVEEEDQIMLVTDKGQLIRCPVGGIRIVGRSTQGVTVFNTAEDEHVVSV 903

Query: 895 ERIRESEIVDEAES 908
           E I E       + 
Sbjct: 904 EHIGEEAENGNGDG 917


>gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42]
          Length = 908

 Score =  970 bits (2506), Expect = 0.0,   Method: Composition-based stats.
 Identities = 620/872 (71%), Positives = 736/872 (84%), Gaps = 1/872 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAI
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDF
Sbjct: 61  YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC+A+I++P I+L
Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GDREQI++TEIPY
Sbjct: 181 PELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT L
Sbjct: 241 QVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIA
Sbjct: 301 QTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           VAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q
Sbjct: 361 VANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSEEQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE  
Sbjct: 421 ARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDEFG 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
           TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RD
Sbjct: 481 TPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRD 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           EDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI
Sbjct: 541 EDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQ 692
           +P PEDE+SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  DEILSVETCT 
Sbjct: 601 LPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTD 660

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+  ER 
Sbjct: 661 RDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERA 720

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
            Y+K  +A+RR I  D E+I  +  + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+
Sbjct: 721 AYLKRSAAERRAIGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRS 780

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRI
Sbjct: 781 SSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRI 840

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ASRATKGV IFSTAKDE+VVSVERI E E  D
Sbjct: 841 ASRATKGVTIFSTAKDEKVVSVERISEPEEDD 872



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       + I+L 
Sbjct: 765 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 824

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D  E        +
Sbjct: 825 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDDTEGAVDAAEAA 883

Query: 760 AQRRLISGDTEEITSLKNDSSVEGN 784
           A         E   +  +       
Sbjct: 884 AGADETPFADETPVADGDPGGAAEE 908


>gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
 gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b]
          Length = 911

 Score =  968 bits (2503), Expect = 0.0,   Method: Composition-based stats.
 Identities = 544/913 (59%), Positives = 671/913 (73%), Gaps = 6/913 (0%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +              I  VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI+F
Sbjct: 1   MADDDTEKTGAAAPGSDIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K YVK ARI G+VMGKYHPHG+AAIYDAL RMAQ +S+RL LI+GQGNFG
Sbjct: 61  SMHENGHTPDKPYVKSARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVD DPPAA RYTE RL K A  LL+DL + TVDF+PNYD    EP VL AR+PN+LVNG
Sbjct: 121 SVDNDPPAAMRYTESRLAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+D  +A+ID PD+ +  LMEI+ GPDFPT A ILGR GI+
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATILGRGGIR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           NAY+TGRGSI++R  + IE    +RE I+ TEIPYQVNKAA++E+IAELVREK+I  +AD
Sbjct: 241 NAYSTGRGSIIMRAKAEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G R+V+ELKR A ADV+LNQL+R+T+LQS F VNM+ALNG +PE  TL  +L
Sbjct: 301 LRDESDRDGMRIVVELKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGRPELLTLKDVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AFV FRE VV RRTK+ LNKARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  LM
Sbjct: 361 VAFVDFRESVVTRRTKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R W A D+  L+ LI D  + +  DGT+ LSE Q RAIL+LRL RLT LGR++I   LN
Sbjct: 421 ERLWPAKDMAPLVALIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  EI E L+IL SR +L GI+K E+++VK    TPRRT+IV+G  D+EDED I REDM
Sbjct: 481 KLAAEIAEYLEILRSREKLFGIVKDEMIAVKTAYATPRRTQIVDGDGDVEDEDLIAREDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+KRVPLS YRAQRRGGKGRSG+  ++EDFV  LF+ STHT VLFFSSLG  
Sbjct: 541 VVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRA 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YKEKVWRLP+ +PQARGKAL+N+L L Q ERITTIMP PEDESSW  L  +FAT  G VR
Sbjct: 601 YKEKVWRLPLAAPQARGKALVNLLPLEQNERITTIMPLPEDESSWATLDAIFATTRGTVR 660

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF  + RSG IAMKLD  + I+ V T ++ +D+LLTT+ GQC+RFP++ +RVF  
Sbjct: 661 RNKLSDFSDVRRSGIIAMKLDEGEAIVDVATASENDDVLLTTREGQCIRFPVTDVRVFQS 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+S+GVRG++LA  D+VIS++I+ H +A  +ER  Y+K  +AQRR  + +          
Sbjct: 721 RSSMGVRGVALAAEDRVISLSILRHFEASGEERAAYLKRAAAQRRAGAQENGAEEGAAEA 780

Query: 779 SSVEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   +SE R ++++  EQ ILTVSE G+GKR+SS+++RI+ R GKGI A  V+  N
Sbjct: 781 EESSASIELSEARFRDMEQAEQIILTVSENGYGKRSSSFEYRITGRGGKGIVAMAVNARN 840

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV    +I+LV+D G LIR PV  IRI  R T+GV++F TA+ ERVVSVE 
Sbjct: 841 --GKLVASFPVGSGAEIMLVTDGGQLIRCPVEGIRIVGRGTQGVIVFDTAEGERVVSVEH 898

Query: 897 IRESEIVDEAEST 909
           I E+    E    
Sbjct: 899 IGETGAEAEVAEE 911


>gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 943

 Score =  968 bits (2501), Expect = 0.0,   Method: Composition-based stats.
 Identities = 510/900 (56%), Positives = 680/900 (75%), Gaps = 9/900 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+ +     + +   I+ VSI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSTNTPKPIDLD---ISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G E+NK Y K ARI G+VMGKYHPHG+ +IYDA+ RM Q++++RL LI+GQGNFGS+
Sbjct: 58  KESGYEFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KAAH LLDD+ K+TVDF+PNYD + +EP+VL AR+PN+LVNG G
Sbjct: 118 DGDRAAAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C A+IDNP +  + L+E++ GPDFPTG  ILGR+G++ A
Sbjct: 178 GIAVGMATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTILGRSGVRAA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS+++RG +H E  SG R+ I+VTE+PYQVNKA+M+EKIAELVREK++  I+D+R
Sbjct: 238 HLTGRGSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIE+KR A A+V+LNQL+RYT LQ+ F VNM+ALNG KPE   L  I++A
Sbjct: 298 DESDRRGVRVVIEVKRDAMAEVVLNQLFRYTPLQTSFGVNMLALNGGKPELLALRPIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEV+ RRT + L KAR+RAH LVGLAIAVANLD V+++IR +P+P+ AR  LM R
Sbjct: 358 FITFREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ LI LID+    +  DG   LSE+Q RAIL+LRL RLTGL RD +  EL  +
Sbjct: 418 DWPAMDVEPLIKLIDEPG-RMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEI 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G +I+E L IL SR+RL  I++ EL+ +K+   TPRRT + E   + + ED I RE+MVV
Sbjct: 477 GQQIEEYLHILRSRARLFEIMRAELVEMKEAYATPRRTTLEENEFEHDIEDLIQREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV++ GY+KRVPL+ YRAQRRGG+GR+G+ MRDEDFVT +F+V+TH  +LFFSS G VYK
Sbjct: 537 TVTNTGYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSDGMVYK 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP+G+PQARGKA++NI+ LN+GERITT+MP PEDE +W+ L V+FAT+ GNVRRN
Sbjct: 597 MKVYRLPLGTPQARGKAMVNIMPLNEGERITTVMPLPEDEGAWDQLDVMFATETGNVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +LSDF  +  +GKIAMKLD  D ++ V TCT E D+LLTT LG+ +RF +  +RVFAGR 
Sbjct: 657 RLSDFTNVMSNGKIAMKLDEGDHLIGVATCTDEQDVLLTTNLGKAIRFAVGDVRVFAGRT 716

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI LA+ D+V  ++I+ H +A  + R  Y+K  SA RR       E        +
Sbjct: 717 STGVRGIRLAEDDRVNRLSILGHVEASAETRAAYLKQASALRRA--SGETEGEDDSTLDA 774

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G +S E  ++L+ +E+F+LTV+ +GFGKRTS+Y++R++ R G+GI   ++S+ N  G 
Sbjct: 775 EPGVLSAEEFEDLRQREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERN--GT 832

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRE 899
           +VA FP+ + DQ+++++D G LIR+PVN++RIA R T+GV +F      E VVSV R+ E
Sbjct: 833 VVAAFPIANEDQVMMITDGGQLIRMPVNDVRIAGRKTQGVTLFRLSDDGEHVVSVARLPE 892



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 5/154 (3%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIA-MKLDS-RDEILSVETCTQENDILLT 699
               +++  T  G  +R    ++ +       IA +++      +++      E+ +++ 
Sbjct: 789 QREEFLLTVTSRGFGKRTSAYEYRVTGRGGQGIANIEMSERNGTVVAAFPIANEDQVMMI 848

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHM 758
           T  GQ +R P++ +R  AGR + GV    L   G+ V+S+A +   + + D+     +  
Sbjct: 849 TDGGQLIRMPVNDVR-IAGRKTQGVTLFRLSDDGEHVVSVARLPEMNGNGDDGEGDDETP 907

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                  +    + +   +     G   E    +
Sbjct: 908 DESLAEDANGGRDESGEASGLPPAGQSPERNGDD 941


>gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506]
 gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506]
          Length = 918

 Score =  967 bits (2499), Expect = 0.0,   Method: Composition-based stats.
 Identities = 546/907 (60%), Positives = 682/907 (75%), Gaps = 12/907 (1%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++   +  ++     I  VSITDE+  SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +      + Y K AR++G+ MGKYHPHGN AIYDAL R+AQD+S+RL LI+GQGNFGS
Sbjct: 61  MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAAERYTE RL K A  LLDDL KDTVDF+ NYDG  QEP VL AR+PN+LVNG 
Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEVVD CVA+ID PD+D++ L++ I GPDFPTGA+ILGR+GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALILGRSGIRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSIV+R  + IE+   DR+ I+VTEIPYQVNKA M+E+IAELVR+KR+  IA++
Sbjct: 241 AYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES R+G RVV E+KR A ADV+LN LYR ++LQ+ F  NMVALNG KP   TL  +L 
Sbjct: 301 RDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALNGGKPALMTLHDLLT 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFVAFREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+  IR SP+P TAR  LM 
Sbjct: 361 AFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREALMT 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A D+  LI LIDD  + +  DGT  LS  Q RAIL+LRL RLT LGRD++ +EL+ 
Sbjct: 421 RDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADELDK 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           + +EI++ LDIL+SR R+  I+K ELL+VK E  TPR+T I +   D EDED I REDMV
Sbjct: 481 IAVEIRDYLDILASRERIRTIVKDELLAVKAEFGTPRKTEITDAEGDFEDEDLIAREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS YR+QRRGGKGRS +  RDEDFVT +F+ STH  VLFFSS G VY
Sbjct: 541 VTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+ +PQARGKAL+NIL L +GERIT+IM  P DE +W+ L ++F+T  G VRR
Sbjct: 601 KLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALP-DEETWSRLQIMFSTTGGTVRR 659

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N+LSDF  +NR+GKIAMKL+  + I  V+ CT+++D+LLT+  GQC+RFP+  +RVF GR
Sbjct: 660 NELSDFTNVNRNGKIAMKLEEGEAIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN-- 777
           +S+GVRGI L +GD++ISMAI+ H DA  +ER  Y+K  +A RR  +G        +   
Sbjct: 720 DSMGVRGIQLEEGDRLISMAIIRHVDATAEERAAYIKLANAVRRSQAGLENGAEEPETVA 779

Query: 778 ------DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                   +   +I + R  E+   EQFILT+SE GFGKRTSS+++R + R GKGI A  
Sbjct: 780 DADAEEAVAAPADIDQARYVEMSANEQFILTLSENGFGKRTSSFEYRTTRRGGKGIVAMA 839

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V++ N  G L+A FPV + DQI+LV+D G LIR PVN IRI  R ++GV++F+TA+DE+V
Sbjct: 840 VNERN--GPLIASFPVEEADQIMLVTDGGQLIRCPVNGIRIVGRGSQGVIVFNTAEDEKV 897

Query: 892 VSVERIR 898
           VSVER+ 
Sbjct: 898 VSVERVS 904



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 92/248 (37%), Gaps = 16/248 (6%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    ++     + D  DE L       E+ ++  +  G   R P+S  R    R   G 
Sbjct: 513 FGTPRKTEITDAEGDFEDEDLIAR----EDMVVTVSHAGYIKRVPLSTYRS-QRRGGKGR 567

Query: 725 RGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             +     D V  + +   HA   +      +  +   R  +S       +L N   +  
Sbjct: 568 SAMQTRDEDFVTRIFVASTHAPVLFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLTE 627

Query: 784 NISEERCQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                    L  +E +    I+  +  G  +R    DF   NR+GK   A  + +     
Sbjct: 628 GERITSIMALPDEETWSRLQIMFSTTGGTVRRNELSDFTNVNRNGK--IAMKLEEGE--- 682

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIR 898
           A+  V    + D ++L S KG  IR PV E+R+   R + GV      + +R++S+  IR
Sbjct: 683 AIADVDLCTEQDDVLLTSAKGQCIRFPVPEVRVFKGRDSMGVRGIQLEEGDRLISMAIIR 742

Query: 899 ESEIVDEA 906
             +   E 
Sbjct: 743 HVDATAEE 750


>gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
 gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001]
          Length = 908

 Score =  966 bits (2498), Expect = 0.0,   Method: Composition-based stats.
 Identities = 547/896 (61%), Positives = 673/896 (75%), Gaps = 5/896 (0%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   +        I  VSITDEM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+   +
Sbjct: 6   DDTGAGTPPPATDIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFE 65

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G    +KYVK ARI G+V+G+YHPHG+ +IYDAL RMAQD+S+RL+LI+GQGNFGSVDG
Sbjct: 66  SGHLPERKYVKSARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDG 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE RL + A  LL D+ K+TVDF+ NYD S +EP VL AR+PN+LVNG GGI
Sbjct: 126 DPPAAMRYTESRLARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGE+VD CVA+ID+P + ++AL EI+ GPDFPTG +ILGR G + AY 
Sbjct: 186 AVGMATNIPPHNLGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMILGRAGTRQAYT 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI++R  SH+E+   +RE ++ TEIPYQVNKA ++EKIAELV++KRI  I+DLRDE
Sbjct: 246 TGRGSIIMRARSHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDE 305

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+E+KR A ADV+LNQLYRYT LQ+ F  NMVALNG +PE   L  +L AF 
Sbjct: 306 SDRDGMRIVVEIKRDAMADVVLNQLYRYTPLQTSFGANMVALNGGRPELMNLKDLLLAFN 365

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR SP+P TAR  LM R W
Sbjct: 366 DFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDW 425

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT LGRD+I +EL  L  
Sbjct: 426 PAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLAD 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI + LDIL SR+R+  I+K EL  V++   TPR+T I++    +EDED I REDMVVTV
Sbjct: 486 EIADYLDILRSRARIQAIVKHELAEVRELFATPRKTEIIDSDFSVEDEDLIAREDMVVTV 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKRVPLS YR+Q+RGGKGRSG+  RDEDFVT LF+ +THT VLFFS  G  YKEK
Sbjct: 546 SHAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           VWRLP+ +P ARGKAL+NIL L    ERITTIMP PEDE+SW  L V+FAT  GNVRRNK
Sbjct: 606 VWRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDEASWETLDVMFATASGNVRRNK 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF+Q+NR+GKIAMKLD  D I+ VE C  + ++LLTT LGQC+RFP+  +RVF GR+S
Sbjct: 666 LSDFVQVNRNGKIAMKLDPGDHIVHVEICRPDQNVLLTTALGQCIRFPVEDVRVFKGRDS 725

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI+L K D+VISMAI+   DA  +ER  Y+K   A   +     E   + + + + 
Sbjct: 726 TGVRGINLGKDDKVISMAILNAFDASPEERAGYLKMRRAV--IGDSGEEGTENGEAEEAS 783

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              IS ER  ++   EQF+LT+SE+GFGKR+SSY++R S R GKGI A  V+  N  G L
Sbjct: 784 AAAISPERYTQMGAAEQFVLTLSERGFGKRSSSYEYRTSGRGGKGITAMRVNARN--GNL 841

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA FPV  +DQI+LV++ G LIRVPV++IRI  RA++GV +F+T K ERVVSVE I
Sbjct: 842 VASFPVEASDQIMLVTNAGQLIRVPVDDIRIVGRASQGVTVFNTDKAERVVSVEHI 897


>gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48]
 gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48]
          Length = 918

 Score =  966 bits (2497), Expect = 0.0,   Method: Composition-based stats.
 Identities = 513/914 (56%), Positives = 674/914 (73%), Gaps = 8/914 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   +S      GI+ V+I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M
Sbjct: 1   MTD-TPASGLPTPHGISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +KKYVK A I G+VMG+YHPHG+ AIYDAL RMAQ +S+RLLL++GQGNFGSV
Sbjct: 60  YEEGRTHDKKYVKSANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +AA  L+ D+ K+TVDF  NYDG+ QEP VL +R PN+LVNG G
Sbjct: 120 DGDPPAAMRYTESRMTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE+++ C+A++D+P++  + L+ I+ GPDFPTG  ILGR+G + A
Sbjct: 180 GIAVGMATNIPPHNLGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEILGRSGARQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGS+++RG + +E    DRE I+VTE+PYQVNKA ++E IAE+VREKRI  I+D+R
Sbjct: 240 LLTGRGSVIMRGKASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+VIELKR AS DVILNQLYRY++LQ+ F VNM+ALN  +P++  L  +L+ 
Sbjct: 300 DESDRQGMRMVIELKRDASGDVILNQLYRYSALQTSFGVNMLALNHGRPQQMGLRKLLEI 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVVVRRT++ LNKARDR HVLVGLAIAVAN+DE++ IIR S +P  AR  L  +
Sbjct: 360 FLDFREEVVVRRTRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAK 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W A D+  LI+LI D    +   G + L+E Q RAIL L L+RLTGLGRD+I  E  +L
Sbjct: 420 NWPAGDMSPLIELIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTL 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L ILSSR R+LGI+++EL  VK     PRR+ IV+G  D+EDED I REDMVV
Sbjct: 480 AASIAEYLAILSSRERILGIVREELEEVKALYAEPRRSLIVDGEADIEDEDLIPREDMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GYVKR PLS YR Q RGGKGRSG+ M+DED +T ++  STH  +LFFSS G  YK
Sbjct: 540 TVTHSGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYK 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP+G+PQ++GKA +N+L L++ E +T I+  PEDE++W+ L +VFAT+ G+VRRN
Sbjct: 600 LKVWRLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF+ +NR+GKIAMKL+  D I+ V  CT++ D+LL+T  G+ +RF +  +RVF GR+
Sbjct: 660 KLSDFVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEVRVFKGRD 719

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG----DTEEITSLK 776
           S GVRG+ L + D VISMAI+   +A   ER  Y+KH ++ R  ++G     T  +    
Sbjct: 720 STGVRGVRLGEDDTVISMAILRRVEATPAERAAYLKHAASLRAAVTGEGEEATVVVEEEA 779

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + + + ++S ER  EL   E+FILT+++ GFGKRTSSYD+R + R G+GI A D+SK  
Sbjct: 780 EEGAEDASLSVERIAELGAAEEFILTIADTGFGKRTSSYDYRRTGRGGQGIVAIDLSKR- 838

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LVA FPV D DQ++LV+D G LIR PV++IR+A R T+GV IF T+  E+VVSVER
Sbjct: 839 -GGKLVASFPVEDTDQLLLVTDGGQLIRTPVSQIRVAGRNTQGVTIFRTS-GEKVVSVER 896

Query: 897 IRESEIVDEAESTE 910
           + E+   D  +  E
Sbjct: 897 LAETAEEDGPDEAE 910


>gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110]
          Length = 884

 Score =  965 bits (2493), Expect = 0.0,   Method: Composition-based stats.
 Identities = 554/886 (62%), Positives = 673/886 (75%), Gaps = 2/886 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M + G   +KKYVK AR+ G+V+GK
Sbjct: 1   MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDA+ RMAQD+S+R+ LI+GQGNFGSVDGDPPAA RYTE RL KAA  LL 
Sbjct: 61  YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+PNYD +  EP VL A++PN+LVNG GGIAVGMATNIP HNLGEV+D CVA
Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNP + +D L+ I+ GPDFPTG VILGR GI+ AY  GRGSIV+RG   IE    +RE
Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVILGRAGIRAAYHLGRGSIVMRGKVAIETIRKERE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +++TEIPYQVNKA M+E+IAELV+EK+I  I DLRDESDR GYRVVIELKR A ADV+L
Sbjct: 241 ALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F VNMVAL+  +P    L  +L  FV FRE VV RRTK+LL KARDRA
Sbjct: 301 NQLYRFTPLQTSFGVNMVALDSGRPRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARDRA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGLAIAVAN+DE++R+IR SP+P TAR  LM R W A D++D++ LIDD  + I  D
Sbjct: 361 HILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRISPD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT+ LS  Q RAIL+LRL RLT LGRD+IR+EL+ L  EI + LDIL SR R+LGIIK E
Sbjct: 421 GTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIKTE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  VK E  TPRRT I+E   ++EDED I REDMVVTVSH GYVKRVPLS YRAQRRGGK
Sbjct: 481 LAEVKAEFATPRRTVIMEQEGEVEDEDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GR+G+  RDEDFV+ LF+ STHT VLFFSS G VYKEKVWRLP+ +P ARGKALINIL L
Sbjct: 541 GRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLPMAAPNARGKALINILPL 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QGERITTIMP PEDES+W NL V+FAT  GNVRRNKLSDF+ + RSG IAMKLD  + I
Sbjct: 601 EQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAI 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + V+ CT+ +D+LLT   GQC+RFP++ +RVF GR S+GVRGI+L +GD+VIS+AI+ H 
Sbjct: 661 VDVQICTERDDVLLTGAGGQCIRFPVTDVRVFTGRTSMGVRGIALGEGDKVISLAILRHV 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           +   DER  Y+K   A     + +     +   ++S    +++ER  E+   EQ +LTVS
Sbjct: 721 ETTSDERSAYLKMRRAVAGEATAEEPAADAEAEETSGSFQLAQERYVEMSAAEQVVLTVS 780

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+GKRTSSY++R + R GKGI A  V+  N  G LVA FPV D DQI+LV+DKG LIR
Sbjct: 781 VNGYGKRTSSYEYRTTGRGGKGIVAMSVNNRN--GNLVASFPVEDADQIMLVTDKGQLIR 838

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            PV  IRIA R+T+GV++F TA+DE VVSVE I E        + E
Sbjct: 839 CPVEGIRIAGRSTQGVIVFDTAEDEHVVSVEHITEEAESGNGANGE 884


>gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100]
 gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100]
          Length = 941

 Score =  963 bits (2490), Expect = 0.0,   Method: Composition-based stats.
 Identities = 521/941 (55%), Positives = 673/941 (71%), Gaps = 34/941 (3%)

Query: 1   MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +    +  +     I  + ITDEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MADPSDGNKGDRGAGDIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G  WNK Y K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+R+ LI+GQGNFGS
Sbjct: 61  MSENGYSWNKPYRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGDPPAA RYTE RLQK +  LL+DL  DTVDF+ NYD S +EP VL AR+PN+LVNG 
Sbjct: 121 VDGDPPAAMRYTEVRLQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+A ++NP + ++ LME I GPDFPTG VI+GR GI+ 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIMGRAGIRA 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRGS+V+RG  H+E    DR+ ++VTEIPYQVNKA + E+IAELVREKR+  I+D+
Sbjct: 241 AYLKGRGSVVVRGKVHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDV 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR GYRVVIELKR A  DV+LNQLYR+TSLQS+F+ NMVALN  +PE+ TL+  ++
Sbjct: 301 RDESDRSGYRVVIELKRDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLDFIQ 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF  FRE V+ RRTK+LL KARDRAHVLVGLA AVAN+DEV+++IR +P+P +AR  LM 
Sbjct: 361 AFTQFRETVITRRTKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R W A DI  L+ LI+D    I       LS  Q +AILELRL RLT LGRD+I +EL +
Sbjct: 421 RDWPADDIAPLLLLIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKA 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++ L+ILSSR+R++ I++ EL ++K+E  TPRRT I++   +++DED I +EDMV
Sbjct: 481 LADKIRDYLNILSSRARVISIVRDELTAIKEEFATPRRTEILDVEGEVDDEDLIQKEDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTVSH GY+KRVPLS YRAQRRGGKGRSG+  RDEDFVT LF+ +THT VLF SS G  Y
Sbjct: 541 VTVSHRGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+ +PQARGKALIN+L L Q E IT+I+P PE+    + ++++FAT+ GNVRR
Sbjct: 601 KMKVWRLPLSAPQARGKALINLLPLQQDETITSILPLPEER-DESGVFILFATRSGNVRR 659

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N+L+DF ++ ++GKIAMKLD  D+I   + C + +DILLTT  GQ +RFP++ +R+F GR
Sbjct: 660 NELADFAEVRQNGKIAMKLDPGDDIAGAQLCRETDDILLTTANGQAIRFPVTDVRIFKGR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---- 775
            S GVRG+ L + D VIS+AI+ H +A   ER  Y+K  +A RR  +G+           
Sbjct: 720 ESTGVRGVRLDEDDTVISLAILRHMNATPAERAAYLKQANAMRRAAAGERAATEGDIVEQ 779

Query: 776 ----------------KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                             +S+   +++  R  E+   EQ++LT+SE+GFGKRTSSY++R 
Sbjct: 780 EAAAAAEAVEALDDGEAIESTDIADLTPARYGEMGAAEQYVLTMSERGFGKRTSSYEYRT 839

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           S R GKGI A  V++ N  G L+A FPV D DQI+LV++ G LIR P+  I I  R+ +G
Sbjct: 840 SGRGGKGIIAMAVNERN--GRLIASFPVEDTDQIMLVTNGGKLIRCPIEGISITGRSAQG 897

Query: 880 VVIFSTAKDERVVSVERIR----------ESEIVDEAESTE 910
           V IF T +DERVVS E I             +   +AE  E
Sbjct: 898 VTIFRTDQDERVVSAELISDDGTGNGNGDGPDAGGDAEGEE 938



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTK 701
             YV+  ++ G  +R    ++    R   G IAM ++     +++       + I+L T 
Sbjct: 817 EQYVLTMSERGFGKRTSSYEYRTSGRGGKGIIAMAVNERNGRLIASFPVEDTDQIMLVTN 876

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ +R PI  I    GR++ GV      + ++V+S  ++                  A+
Sbjct: 877 GGKLIRCPIEGI-SITGRSAQGVTIFRTDQDERVVSAELISDDGTGNGNGDGPDAGGDAE 935

Query: 762 RRLIS 766
               +
Sbjct: 936 GEEPT 940


>gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
 gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1]
          Length = 932

 Score =  963 bits (2489), Expect = 0.0,   Method: Composition-based stats.
 Identities = 520/916 (56%), Positives = 669/916 (73%), Gaps = 8/916 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   +  ++   G+  ++I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MTDETHTPPDDRRGGVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   ++ YVK AR+ G+VMGKYHPHG+ AIYD + RMAQ +S+ LLLI+GQGNFGSV
Sbjct: 61  NEQGHTPDRGYVKSARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE R+ +AA  +L DL KDTVDF+ NYDGS QEPVVL +R PN+LVNG G
Sbjct: 121 DNDPPAAMRYTESRMTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD C+A IDNP+I LD L++I+ GPDFPTG  I+GR+G + A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEIIGRSGARQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRGS+++RG + IE+   +RE IV+T IPYQVNKAA++E+IAELVREKRI  +ADLR
Sbjct: 241 LMTGRGSVIMRGKATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+E+KR ASA+VILNQLYRYT LQS F VNM+ALN  +PE+  L  ++ A
Sbjct: 301 DESDRDGMRVVVEMKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGRPEQMGLREMVTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEVVVRRTK+ L+KARDR HVLVGLAIAVAN+DE + IIR S +P  AR  L+ +
Sbjct: 361 FVDFREEVVVRRTKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  L++LI D    +     + L++ Q RAIL L L+RLTGLGRD+I  E   L
Sbjct: 421 DWPAGDMLPLVELIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEAREL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+  L+IL+SR R++ I+++EL+ V+++   PRRT IVEG  D+EDED I RE+MV+
Sbjct: 481 AGVIRGHLEILASRERVMAIVREELVQVREQFAVPRRTEIVEGDADVEDEDLIAREEMVI 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GYVKR PL+ YR Q RGGKGRSG+  ++ED VT +F  +THT +LFFSS G  YK
Sbjct: 541 TVTHGGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP+G+P +RGKA +N+L +  GE IT+I+P PEDE++W+   V+FAT+ GNVRRN
Sbjct: 601 LKVWRLPLGTPTSRGKAFVNLLPIEPGESITSILPLPEDEATWDQYDVMFATRSGNVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGR 719
           KLSDF+ I R+GKIAMKLD  D I+ V  C   +ND+LLTT LG+C+RF    +RVFAGR
Sbjct: 661 KLSDFVDIRRNGKIAMKLDEGDAIIGVGVCNAGQNDVLLTTALGRCIRFATEEVRVFAGR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR-----RLISGDTEEITS 774
           +S GVRGI LA+GD VISMAI+  A A   ER  Y+KH  A R          +T     
Sbjct: 721 DSTGVRGIRLAEGDSVISMAILRSAPATPAERAAYLKHAKAMRIATGEAEEGEETAAPEE 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  E  +  ER  E+   E+ ILTVS +G+GKRTS+Y+FR + R G+G+ A D++K
Sbjct: 781 EDEANGEEAALGPERLAEMGAAEEIILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTK 840

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G L   FPV++ D+I+LVSD+G LIR+PV ++R+A R T+GV+IF  + DE VVSV
Sbjct: 841 R--GGKLAGSFPVDEGDEILLVSDQGQLIRIPVRQVRLAGRNTQGVIIFRKSADEHVVSV 898

Query: 895 ERIRESEIVDEAESTE 910
           ER+ E    DE E  +
Sbjct: 899 ERLAEPAGDDEVEDGD 914



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 48/126 (38%), Gaps = 4/126 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQ 704
           ++  +  G  +R    +F +  R G+  +         ++       + ++ILL +  GQ
Sbjct: 806 ILTVSTEGYGKRTSAYEFRRTGRGGQGLLAQDLTKRGGKLAGSFPVDEGDEILLVSDQGQ 865

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R P+  +R  AGRN+ GV     +  + V+S+  +     D +     +         
Sbjct: 866 LIRIPVRQVR-LAGRNTQGVIIFRKSADEHVVSVERLAEPAGDDEVEDGDIGGEDGTDAG 924

Query: 765 ISGDTE 770
                +
Sbjct: 925 TDNGGD 930


>gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503]
          Length = 924

 Score =  962 bits (2486), Expect = 0.0,   Method: Composition-based stats.
 Identities = 506/917 (55%), Positives = 660/917 (71%), Gaps = 12/917 (1%)

Query: 2   TEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           TE+I        + E+GI  +SIT+EMQ SYL YA++VI+ RAIPD RDGLKPVHRRIL+
Sbjct: 9   TENIPPQGAGSGDGEEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILW 68

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   +K++ K A + G+V+GKYHPHG+ A+YDAL RMAQ +S+RL L++GQGNFG
Sbjct: 69  SMQEQGYTHDKRHRKSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFG 128

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+D DPPAA RYTE R+   A  LL D+ KDTVDF   YDG  QEP VL AR+PN+LVNG
Sbjct: 129 SIDNDPPAAMRYTEVRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNG 188

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGE++D  V +ID P +  + L+ I+ GPDFPTGA I+G++G +
Sbjct: 189 AGGIAVGMATNIPPHNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIMGQSGAR 248

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            A  TGRGS+V+R  + +E+   DR  I+V++IP+QVNKAAM+E+IA LVREK++  IAD
Sbjct: 249 QALLTGRGSVVMRATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIAD 308

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G RVVIELKR A+A+V+LN LY+ + LQ+ F+ N++ALN  +PE+ TL  +L
Sbjct: 309 LRDESDRHGIRVVIELKRDANAEVVLNNLYKQSPLQTSFAYNLLALNRGRPEQMTLRTVL 368

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K+FV FREEVV RRTK+LL KARDRAHVLVGLAI+VAN+DEVVR+IR +PNP  AR  LM
Sbjct: 369 KSFVDFREEVVTRRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALM 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R+W A D+  L+ L+ D  +++  DG++ LSE Q RAIL+LRL RLT LGRD+I +EL 
Sbjct: 429 GRNWPAKDLASLVALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQ 488

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           SL  +I + L IL  R R+L IIK EL  V++   TPR+T+ ++ +   + ED I REDM
Sbjct: 489 SLADKIADYLQILRDRDRVLTIIKDELADVRERFATPRKTQFIDAIEMED-EDLIAREDM 547

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GYVKR  L  YRAQRRGGKGRSG+ M+D+DF++ LF+ +THT +LFF+  G  
Sbjct: 548 VVTVSHAGYVKRTSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMA 607

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YK K+WRLP G P +RGKA IN+L L+QGER+T I+P P+DE+ W ++ +VFAT+ GNVR
Sbjct: 608 YKLKLWRLPEGGPTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVR 667

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           RNKLSDF  +N++GKIAMKLD  D ++ V    +  DILLTT+ G  +RFP+ A+RVF+G
Sbjct: 668 RNKLSDFTNVNKAGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSG 727

Query: 719 RNSVGVRGISLAKGDQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R S GVRGI     D+     V+SMAI+ H D   +E   Y+KH +A RR  +G+ E   
Sbjct: 728 RTSTGVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAYLKHAAAMRRA-AGEGETEG 786

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S       E  +S ER   ++  EQFILT +E G+GKRTSS+++R S R G+GI     S
Sbjct: 787 SDAEAEGSEAALSTERLAAMQAAEQFILTATENGYGKRTSSFEYRTSGRGGQGIAGIVTS 846

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G +VA FPV D D+I+LV+D G LIR  V +IR+A R T+GV I +T + ERVVS
Sbjct: 847 ARN--GRVVASFPVEDADEIMLVTDGGQLIRTGVADIRVAGRNTQGVKILTTRETERVVS 904

Query: 894 VERIRESEIVDEAESTE 910
           VE + E++  D+    E
Sbjct: 905 VEHVPEAQNDDDLPDDE 921


>gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
 gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506]
          Length = 950

 Score =  961 bits (2485), Expect = 0.0,   Method: Composition-based stats.
 Identities = 566/893 (63%), Positives = 702/893 (78%), Gaps = 6/893 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI DEMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+   + Y K A + 
Sbjct: 27  VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEVMGKYHPHG++AIYDAL RMAQDWSLR  LIEGQGN+GS+DGDPPAA RYTECRL+K 
Sbjct: 87  GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  LL D+ K+TVDF+ NYDG  QEPVVL A +PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGCVA+IDNP I L  +MEII GPDFPTGA++LG+ GI++AY+TGRGS+++RG  H E 
Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILLGKAGIQSAYSTGRGSLLMRGKVHTET 266

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             GDRE I+VTE+PYQVNKA M+EK+AELVR+KRI  I+D+RDESDR+GYRVV+ELKR A
Sbjct: 267 IRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRDA 326

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           SADVILNQLYR+T LQ+ F  NMVALNG KPE+ TL+ +L AFVAFRE+VV RRTKYLL 
Sbjct: 327 SADVILNQLYRFTPLQTSFGANMVALNGGKPEQLTLMDMLSAFVAFREDVVNRRTKYLLR 386

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+RAHVLVGLAIAVAN+DEV+++IR +P+P TAR +LM R W+A D+  L+ LIDD  
Sbjct: 387 KARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDDPR 446

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + I   GT  LSE Q RAIL+LRL RLT LGRD+I +EL  +G EIK+ L+ILSSR+R++
Sbjct: 447 HRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTRVM 506

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK EL +++DE  TPRRT + EG  D+EDED I REDMVVTVSH GY+KRVPLSVYR+
Sbjct: 507 QIIKDELTAIRDEFATPRRTELSEGAADLEDEDLIPREDMVVTVSHGGYIKRVPLSVYRS 566

Query: 559 QRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           QRRGGKGRSG+ ++++ D VT LF+ +THT VLFFSS G VYKEKVWRLP+ +PQ RGKA
Sbjct: 567 QRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPLTTPQGRGKA 626

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L+N+L L + ERIT+I+P P +E +     V+FAT  G VRRNKLSDF  +NR+GKIAMK
Sbjct: 627 LVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMK 686

Query: 678 LDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           LD   D IL V TC++++D+LLT   GQC+RFP + +RVFAGRNSVGVRGISL K + V+
Sbjct: 687 LDDEQDSILGVATCSEDDDVLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVV 746

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SMAI+ H DA  +ER  Y+K     RR + GDT   +    ++  +  I +ER  EL  +
Sbjct: 747 SMAILRHVDASAEERATYLK----MRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAR 802

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ ILTVSE G+GKR+SSY+FR S R GKGIRATD ++++++GALVA FPV + DQ++LV
Sbjct: 803 EEMILTVSEYGYGKRSSSYEFRTSGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLV 862

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D+G +IRVPV+ I +  RAT GV IF TA  ERVVSVERI +    +  E+ 
Sbjct: 863 TDRGQVIRVPVDGIGMKGRATGGVTIFRTADGERVVSVERIPDQGTDETGEAD 915



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/305 (16%), Positives = 94/305 (30%), Gaps = 48/305 (15%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +E+       V+  +  G V+R  LS +    R GK    +    +     +   S    
Sbjct: 647 NEEEAAERTNVMFATTRGTVRRNKLSDFTNVNRNGKIAMKLDDEQDSI-LGVATCSEDDD 705

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           VL  +S G   +     + + + +         L  ++      I+   +  +     Y+
Sbjct: 706 VLLTASSGQCIRFPTTDVRVFAGRNSVGVRGISLGKSETVVSMAILRHVDASAEERATYL 765

Query: 649 VF-----------------------------------------ATKHGNVRRNKLSDFIQ 667
                                                       +++G  +R+   +F  
Sbjct: 766 KMRRAVEGDTNGESDSDEEAVADVAIDQERYAELGAREEMILTVSEYGYGKRSSSYEFRT 825

Query: 668 INR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             R           +LD    +++      E+ +LL T  GQ +R P+  I    GR + 
Sbjct: 826 SGRGGKGIRATDTNRLDKLGALVAGFPVENEDQLLLVTDRGQVIRVPVDGI-GMKGRATG 884

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV     A G++V+S+  +     D           S       GD      +++    E
Sbjct: 885 GVTIFRTADGERVVSVERIPDQGTDETGEADADVTDSVAPDGGDGDGGSDGPMRDAEGDE 944

Query: 783 GNISE 787
           G+I E
Sbjct: 945 GSIDE 949


>gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12]
 gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 913

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 492/913 (53%), Positives = 637/913 (69%), Gaps = 12/913 (1%)

Query: 1   MTEHIISSDEEEE-----KGITS-VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+     +  +E       I   +SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHR
Sbjct: 1   MTDTPEPPENTDETPPGGGRIQETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G    K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQ
Sbjct: 61  RILYAMHETGNTHEKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD PAA RYTE R+ K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+
Sbjct: 121 GNFGSMDGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNM 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           LVNG GGIAVGMATNIP HNLGEV+D  +A+I+ PD++++ LM+ I  PDFPTG  ILGR
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQILGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            G + AY  GRGS++IR  + IE+   DR  IV+ EIPYQVNK++M+EKIAELVREKRI 
Sbjct: 241 GGARKAYLEGRGSVIIRAKTRIEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IA ++DESDR G RVVIELKR A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL
Sbjct: 301 GIAHVQDESDRVGVRVVIELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L +F++FREEVV RRT Y L KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR
Sbjct: 361 KDFLSSFISFREEVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +LM R W A+DI D I LIDD ++T+  DGT  LSE Q RAIL+LRL RLT +G  ++ 
Sbjct: 421 EKLMTRRWPAADIADYIRLIDDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVT 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +EL  L  +I+E LDIL SRSR++ II  EL  VKD+   PRRT I +   DMEDED I 
Sbjct: 481 DELQELAAKIQEYLDILRSRSRIMAIISDELREVKDQFAVPRRTEITDWSGDMEDEDLIE 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           REDMVVTV+  GY+KR PL  +RAQRRGGKG +G+  +++D VT LF+ +THT +L F++
Sbjct: 541 REDMVVTVTSGGYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTT 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VYK K WRLP G   ARGKAL+N+L ++ G  I  IMP    E  W +L +VFAT  
Sbjct: 601 DGMVYKLKTWRLPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSA 660

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+VRRN LSDF  + R+GKIAMKL     ++    C++E+D++L T LG+ +RF  + +R
Sbjct: 661 GDVRRNALSDFTNVMRNGKIAMKLPEGVSLVKARICSEEDDVMLVTALGRAIRFRTTDVR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           VF GR+S GVRG+ LA+GD+V+SMA++ H  AD  ER  Y+K     RR ++G +EE  S
Sbjct: 721 VFKGRDSTGVRGVRLAEGDRVVSMAVIRHFVADPQERAAYLK----MRRAVAGLSEEAES 776

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              D+   G +S ER  E+   E  ILT++E G GK +SS+D+ +  R G+G+ A D  K
Sbjct: 777 EDEDTVEAGQLSPERYAEMSAAEDLILTITEGGTGKISSSHDYPVRGRGGQGVTAMD--K 834

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               G LVA FPV  +DQI+L +  G  IR PV+ I   SRA  GV +F+TA  E+VVSV
Sbjct: 835 AMRGGPLVACFPVEIDDQIMLATSTGQSIRCPVDGISFRSRAAGGVKVFNTAPGEQVVSV 894

Query: 895 ERIRESEIVDEAE 907
             I +    D  +
Sbjct: 895 AYIADRGEADGDD 907



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 73/223 (32%), Gaps = 13/223 (5%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED V+ V+ LG   R   +  R     G+  +GV          +  ++     +   
Sbjct: 697 SEEDDVMLVTALGRAIRFRTTDVRV--FKGRDSTGVRGVRLAEGDRVVSMAVIRHFVADP 754

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                Y               G +               + P    E S     ++  T+
Sbjct: 755 QERAAY-------LKMRRAVAGLSEEAESEDEDTVEAGQLSPERYAEMSAAEDLILTITE 807

Query: 654 HGNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  + +   D+    +  +      K      +++      ++ I+L T  GQ +R P+
Sbjct: 808 GGTGKISSSHDYPVRGRGGQGVTAMDKAMRGGPLVACFPVEIDDQIMLATSTGQSIRCPV 867

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             I  F  R + GV+  + A G+QV+S+A +        +   
Sbjct: 868 DGI-SFRSRAAGGVKVFNTAPGEQVVSVAYIADRGEADGDDPA 909


>gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157]
          Length = 909

 Score =  959 bits (2479), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/911 (52%), Positives = 629/911 (69%), Gaps = 13/911 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++     +  +E           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPEIPENMDETPPERPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNTHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAALLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+E I GPDFPTG V+LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI
Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             ++ ++DESDR G RVV+ELKR A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+HVL GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYDLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A++I+  + LIDD    +  DGT  LSE Q RAIL+LRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAAEIESYLRLIDDPLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE LDILSSR R++GII  EL  VK+    PRRT+IV+   DMEDED I
Sbjct: 481 TDELEDLAAKIKEYLDILSSRERIMGIIADELREVKENFAVPRRTQIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP      +GKA++NIL +  G  I  IMP    +  W NL +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G+VRRN LSDF  + R+GKIAM L    E+++   C++++D++L T  G+ +RFP + +
Sbjct: 661 AGDVRRNALSDFTNVKRNGKIAMDLPEGVELVNARICSEDDDVMLVTNSGRAIRFPTTDV 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           RVF GR S GVRGI L  GD+V+SM+++ H+    ++R  Y+K     RR ++G T++  
Sbjct: 721 RVFKGRKSTGVRGIRLNDGDRVVSMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAE 776

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
               ++  + N S E   E+   E  ILT++  G GK +SS+D+ +  R G G+ A D  
Sbjct: 777 PSDEEAVADPNFSTELYAEMSAVENLILTITAGGSGKLSSSHDYPVRGRGGMGVMAMD-- 834

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K    G LVA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV +F+T K E VVS
Sbjct: 835 KAMRGGPLVASFPVEMDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVS 894

Query: 894 VERIRESEIVD 904
           V RI +    +
Sbjct: 895 VARIADQGDDE 905


>gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1]
          Length = 894

 Score =  958 bits (2476), Expect = 0.0,   Method: Composition-based stats.
 Identities = 503/891 (56%), Positives = 672/891 (75%), Gaps = 29/891 (3%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
               +  +T V+I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G ++N
Sbjct: 5   PSPSQFDVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYN 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI G+VMGKYHPHG++AIYDA+ RMAQ +S+RL LI+GQGNFGS+DGD  AA 
Sbjct: 65  KPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAM 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ ++AHFL++D+ KDTVDF PNYD S  EP+VL ARYPN+LVNG GGIAVGMAT
Sbjct: 125 RYTEARMARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+D C A+IDNPDI  + +ME++ GPDFPTG  ILGR+GI+ A  TGRGS+
Sbjct: 185 NIPPHNLGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTILGRSGIRAAQLTGRGSV 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG  HIE+   DRE I+VTE+PYQVNKA M+E+IAELVR+K+I  ++DLRDESDR G 
Sbjct: 245 VMRGRCHIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGV 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIE+KR A ADV+L QLY++T LQ+ F VN +ALNG +P+  TL  I+ AF+ FREEV
Sbjct: 305 RVVIEIKRDAIADVVLAQLYKFTPLQTSFGVNSLALNGGRPQMMTLREIIAAFLRFREEV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KARDRAHVLVGL+IAVAN+D+++++IR + +P  AR +LM R W A D++
Sbjct: 365 ITRRTIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVE 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            LI LID+    I  DGT  LSEVQ +AIL+LRL RLTGL RD I +EL  +G +IKE L
Sbjct: 425 PLIRLIDEPGRGI-VDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFL 483

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILSSR +LL +++ EL+ ++++  TPRRT I +   + + ED I REDMVVTV++ GY+
Sbjct: 484 EILSSRPKLLEVMRNELIDMRNQFATPRRTTIEDSEFEADIEDLIAREDMVVTVTNTGYI 543

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVPLS YRAQ+RGGKGRSG+ M+DEDF++ +F+ STHT VLFFSS G  YK KV+RLP+
Sbjct: 544 KRVPLSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVYRLPL 603

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G+PQARGKA++NIL L +GE I+T+MP PEDE++W +L+V FAT  G+VRRN LSDF+ I
Sbjct: 604 GTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSDFVDI 663

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +GKIAMKL+  +++++V+ C+  +DILL T+LG+ +RF +  +RVF GR+S GVRGI 
Sbjct: 664 RANGKIAMKLNDGEQLIAVQPCSDSDDILLATRLGKAIRFQVGDVRVFKGRDSTGVRGIR 723

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   DQVISM+++ H + D + R  Y+++                          +++  
Sbjct: 724 LDDADQVISMSVLRHVEFDMETRDAYLRN--------------------------DLTGP 757

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + +   EQ ILTV+E G+GKRTS+Y++RI+ R G+GI   D+++ N  G +VA FPV 
Sbjct: 758 EAERMSESEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKN--GPVVASFPVG 815

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +D+I+LVSD GTLIR+PV++IRIA R T+GV++  TA++ERVVS  R+ +
Sbjct: 816 HDDEIMLVSDGGTLIRMPVDDIRIAGRKTQGVIVLRTAENERVVSTARLCD 866



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 25/255 (9%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G V+R  LS +   R  GK    + + D + +  +   S    +L  + LG  
Sbjct: 643 VAFATSKGDVRRNLLSDFVDIRANGKI--AMKLNDGEQLIAVQPCSDSDDILLATRLGKA 700

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---------- 648
            + +V  + +   +         L         +++   E +    + Y+          
Sbjct: 701 IRFQVGDVRVFKGRDSTGVRGIRLDDADQVISMSVLRHVEFDMETRDAYLRNDLTGPEAE 760

Query: 649 ---------VFATKHGNVRRNKLSDFI-QINRSGKIA-MKLDSRDEILSVETCTQ-ENDI 696
                    +  T++G  +R    ++         IA + L  ++  +        +++I
Sbjct: 761 RMSESEQMILTVTENGYGKRTSAYEYRITGRGGQGIANIDLTEKNGPVVASFPVGHDDEI 820

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G  +R P+  IR  AGR + GV  +  A+ ++V+S A +   +   +E      
Sbjct: 821 MLVSDGGTLIRMPVDDIR-IAGRKTQGVIVLRTAENERVVSTARLCDLNGSNEESEEEFD 879

Query: 757 HMSAQRRLISGDTEE 771
                     G  +E
Sbjct: 880 EGDDTAATPPGGDDE 894


>gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
 gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255]
          Length = 905

 Score =  958 bits (2475), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/912 (51%), Positives = 636/912 (69%), Gaps = 20/912 (2%)

Query: 1   MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+ I +  ++  +        +SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRI
Sbjct: 1   MTDEIKTPTDDTPEIPSYDGPQISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G   NK Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGN
Sbjct: 61  LYAMHENGYTHNKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS+DGD  AA RYTE RL K + +LL D+ K+TV+F+ NYDG   EP VL ARYPN+LV
Sbjct: 121 FGSMDGDNAAAMRYTEARLDKPSEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLV 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG GGIAVGMATNIP HNLGEV+D  +A+IDNP++    LME +  PDFPTGAVILGR+G
Sbjct: 181 NGAGGIAVGMATNIPPHNLGEVIDATLALIDNPELTSSDLMEYVPAPDFPTGAVILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
              AY  GRGS++IR  + +E+    R  I++ EIPYQVNKA+M+EKIAEL R+K+I  I
Sbjct: 241 AVKAYNEGRGSVIIRAKTRVEEIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGI 300

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           + ++DESDR G RVV+ELKR A+A+V+LNQL+R+T LQ+ F  NM+ALNG KPE+ TL  
Sbjct: 301 SHVQDESDRVGVRVVVELKRDATAEVVLNQLFRFTPLQTSFGCNMLALNGGKPEQLTLYK 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L  F++FREEVV RRT + LNKAR+R+H+L GLA+AV+N+DE+V  IR S +P  AR +
Sbjct: 361 FLSYFISFREEVVARRTAFELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREK 420

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R W A+DI   I LIDD S+T+  D +  LSE Q RAILELRL RLT +G  ++ +E
Sbjct: 421 LMTRRWPAADISQYISLIDDPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  +I+  L+IL SR R++ II  EL  V ++   PRRT I+E   DM+DED I +E
Sbjct: 481 LEELAGKIQNYLEILRSRDRIMSIISDELKEVHEKFAVPRRTEIIEWAGDMDDEDLIEKE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVT+++ GY+KR  L+ +R Q+RGGKG  G+  +DEDFVT++F+ +THT++LFF++ G
Sbjct: 541 DMVVTITNSGYIKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VYK K WRLP+G   A+GKA++NIL ++ G  I  +MP    +  W NL +VFAT  G 
Sbjct: 601 MVYKLKTWRLPLGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDEEWGNLQIVFATDAGG 660

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           VRRN LSDF  +  +GKIAMKL     I++V   T+ +D LLTT LG+ +RFP + +RVF
Sbjct: 661 VRRNALSDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTTSLGKAIRFPTTDVRVF 720

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GVRGI LA GD+V+SMA++ H +A  DER  Y K   A              L 
Sbjct: 721 KGRDSTGVRGIKLAPGDKVVSMAVIRHVNASSDERTAYFKMRRA--------------LS 766

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D +   +IS+ER  EL   E +IL ++  GFGKR+S++++R+S R G+G+ A ++ + +
Sbjct: 767 EDETPNNDISQERYNELSELEDWILIITSGGFGKRSSAHEYRVSGRGGQGVAAANLDRRD 826

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +   +VA F V++ DQI+L +  G  IR PV+ I +  R++ GV +F+T   E+VVSV  
Sbjct: 827 DT--VVAAFTVHEEDQIMLATSTGQSIRCPVSGISLQGRSSSGVTVFNTKDGEKVVSVAY 884

Query: 897 IRESEIVDEAES 908
           I ++E  D ++ 
Sbjct: 885 IADTEDSDVSDD 896


>gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 929

 Score =  956 bits (2471), Expect = 0.0,   Method: Composition-based stats.
 Identities = 545/900 (60%), Positives = 673/900 (74%), Gaps = 4/900 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H  +        I  VS++DEMQ+SYL YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MADHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +     ++ YVK ARI G+VMGKYHPHG+ AIYDAL RMAQ +S+RL LI+GQGNFGSV
Sbjct: 61  HENNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL + A  LL D+  DTVDF+PNYDG   EPVVL AR+PN+LVNG G
Sbjct: 121 DGDPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+IDNP++ ++ L  I+ GPDFPTG  ILGR GI++A
Sbjct: 181 GIAVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSILGRAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRGS+++R    IE+    RE ++VTEIPYQVNKA ++EKIAELVREKRI  I+DLR
Sbjct: 241 YATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+VIE+KR A  D++LNQL+RYT+LQS F  NM+ALNG +PE  TL   L A
Sbjct: 301 DESDRQGMRIVIEIKRDAVPDIVLNQLWRYTALQSSFPCNMIALNGGRPETLTLRDFLTA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRTKYLL KARD AH+ VGLAIAVAN+DEV+R+IR S +   AR  L  R
Sbjct: 361 FIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCAR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D+  LI LI D  +T+  +GT+ LSE Q RAILELRL RLT LGRD+I   LN L
Sbjct: 421 DWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNKL 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI + LDIL SR+RL GIIK E+++VK+   TPRRT I++    ++DED I REDMVV
Sbjct: 481 AAEIADYLDILGSRARLFGIIKDEMIAVKEAHATPRRTIILDSDAGVDDEDLIQREDMVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KRVPLS YRAQRRGGKGRSG+  RD+DFV  LF+ STH  VLFFSS G VYK
Sbjct: 541 TVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLFFSSRGQVYK 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP+ +PQA GKAL+NIL L Q ERITTIMP PEDE  W +L V+FAT  G VRRN
Sbjct: 601 EKVWRLPLSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDVMFATTRGTVRRN 660

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF Q+NR+GKIAM+LD  ++I+ V+ CT+++D+LLTT  GQC+RF ++ +RVF GR+
Sbjct: 661 KLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRFAVTDVRVFKGRD 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GVRGI+L +GD+VIS+AI+ H +AD DER  Y+K   A     + +        N   
Sbjct: 721 SMGVRGIALGEGDRVISLAILRHIEADSDERTAYLKRRRAVAGETAEEAASEAEEANAEE 780

Query: 781 VEG--NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             G  ++S ER  E+   EQ ILT+S  G+GKRTSS+++RI+ R GKGI A  V+  N  
Sbjct: 781 ALGSTSLSLERYAEMSAGEQIILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARN-- 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA  PV + D I+LV++ G LIR PV  IR+A R T+GV++F+TA+DE+VVSVERI 
Sbjct: 839 GKLVASMPVEEGDGIMLVTNGGQLIRCPVEGIRVAGRGTQGVIVFNTAEDEQVVSVERIP 898



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 648 VVFATKHGNVRRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  + +G  +R    ++            +A+   +  ++++     + + I+L T  G
Sbjct: 802 ILTISANGYGKRTSSFEYRITGRGGKGIVAMAVNARNG-KLVASMPVEEGDGIMLVTNGG 860

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +R P+  IRV AGR + GV   + A+ +QV+S+  +   +A+  E     +       
Sbjct: 861 QLIRCPVEGIRV-AGRGTQGVIVFNTAEDEQVVSVERIPEDEAERGEEEGPGEQGPLGDS 919

Query: 764 LISGDTEEIT 773
             S + +   
Sbjct: 920 GPSDNGDTPE 929


>gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 898

 Score =  955 bits (2469), Expect = 0.0,   Method: Composition-based stats.
 Identities = 508/897 (56%), Positives = 669/897 (74%), Gaps = 32/897 (3%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             + +  + +  IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + 
Sbjct: 2   TTLPASPQFD--ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEA 59

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G  +NK + K ARI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGD
Sbjct: 60  GYHFNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGD 119

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL K+AH LL+D+ K+TVDF+ NYD S  EP+VL ARYPN+LVNG GGIA
Sbjct: 120 PPAAMRYTEARLAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+D C A ID+P++ ++ LME++ GPDFPTG  ILGR GI+ A  T
Sbjct: 180 VGMATNIPPHNLGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLT 239

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+V+RG  HIE+   DRE I+VTEIPYQVNKA MLE+IAELVR+K+I  I+DLRDES
Sbjct: 240 GRGSVVMRGRVHIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDES 299

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIE+KR A A+V+L QLYR+T LQ+ F VN +ALNG +PE  TL  I+ AF+A
Sbjct: 300 DRDGVRVVIEIKRDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIA 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FREEV+ RRT + L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P  AR  LM R+W 
Sbjct: 360 FREEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWP 419

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             D++ LI LID+    I  DG   LSE+Q +AIL+LRL RLTGL RD I +EL  +G +
Sbjct: 420 VGDVEPLIQLIDEPGRAI-EDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQ 478

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+  L ILSSR RL  +++ EL+ ++++  TPRRT I E   + + ED I REDMVVTV+
Sbjct: 479 IEAYLLILSSRPRLFEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVT 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GY+KRVPLS YRAQ+RGGKGRSG+ ++DEDF++ +F+V+THT VLFFSS G  YK KV
Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKV 598

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +RLP+G+PQARGKA++N+L L++GE I+TIMP PEDE+SW +L+V+F T  G+VRRN LS
Sbjct: 599 YRLPLGNPQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRNPLS 658

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           DF ++  +GKIAMKL   + ++SV+TC  + +D+LL T LG+ +RFP+  +R F  R+S 
Sbjct: 659 DFTEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSRDST 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L   D+VISM+I+ H D D + R  ++K                          
Sbjct: 719 GVRGIRLDGEDEVISMSILRHTDYDSETRDAFLK-------------------------- 752

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G++  E+ +++  ++QF+LTV+E GFGKRTS++++RI+ R G GI   D++   + G +V
Sbjct: 753 GDLPAEQMEKMGAEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGTVV 810

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           A FPVN  D I+LVSD G LIR+PV++IRIA R T+GV +  TA++ERVVS  R+ +
Sbjct: 811 ASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARLCD 867



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 28/260 (10%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+ V+  G V+R PLS +   R  GK    +    E  ++     +    VL  + LG  
Sbjct: 643 VMFVTSKGDVRRNPLSDFTEVRANGKIAMKLGE-GERLISVQTCAAETDDVLLATHLGKA 701

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------------- 638
            +  V  +     ++R    +  + L+  + + ++                         
Sbjct: 702 IRFPVHDVRE--FKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPAEQ 759

Query: 639 -DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQEN 694
            ++      +V+  T++G  +R    ++    R G     LD   +  +V        E+
Sbjct: 760 MEKMGAEQQFVLTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGTVVASFPVNHED 819

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           DI+L +  G+ +R P+  IR  AGR + GV  +  A+ ++V+S A +    ++ DE    
Sbjct: 820 DIMLVSDGGKLIRMPVDDIR-IAGRKTQGVTLLRTAENERVVSAARLCDIGSNGDEAEEA 878

Query: 755 MKHMSAQRRLISGDTEEITS 774
            +                 +
Sbjct: 879 DEADEGVLDAAEDMAGGEDA 898


>gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
 gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b]
          Length = 908

 Score =  955 bits (2468), Expect = 0.0,   Method: Composition-based stats.
 Identities = 487/909 (53%), Positives = 629/909 (69%), Gaps = 12/909 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+     +       +VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MEENTPERPQYGGP---TVSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEGGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  LL D+ KDTVDF+ NYDG   EP VL AR+PN+LVNG G
Sbjct: 118 DGDNAAAMRYTEVRMDKPAAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV D  +A+I+NPD+  + L+E I GPDFPTG ++LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVCDATLALIENPDLGSEDLIEYIPGPDFPTGGIMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS+VIR  + IE+   DR  IV+ EIPYQVNKAAM+EKIAE VREKRI  IA ++
Sbjct: 238 YIEGRGSVVIRSKTRIEEIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL G L A
Sbjct: 298 DESDRHGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLHGFLSA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEVV RRT + L KARDR+HVL GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 358 FITFREEVVARRTAFELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI + I LIDD ++T   DGT  LSE Q RAIL+LRL RLT LG  ++ +EL  L
Sbjct: 418 RWPAGDILEYIALIDDPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQEL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L IL+SR R++ II  EL  VK++   PRRT+IV+   DM+DED I REDMVV
Sbjct: 478 AAKIKEYLAILASRERIMEIISTELREVKEQFSVPRRTQIVDWSGDMDDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  L+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK
Sbjct: 538 TVTQGGYIKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP+G   ++GKA++NIL + QG  I  IMP    E  W++L V+FAT  G+VRRN
Sbjct: 598 LKTWRLPLGGRTSKGKAIVNILPIPQGVSIAAIMPVDRPEEEWDDLQVMFATTAGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF  + R+GKIAM L    E+++   C + +DI+L T  G+ +RFP + +RVF GR 
Sbjct: 658 ALSDFTNVKRNGKIAMDLPDGIELVNARICDEGDDIMLVTNSGRAIRFPTTEVRVFKGRK 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRGI L   D+V+SM+++ H DA  DER  Y+K   A               +   +
Sbjct: 718 STGVRGIRLQGDDRVVSMSVIRHFDASADERAAYLKMRRALAGAP-------DDGEEPEA 770

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G+I+ +R +E++  E  ILT+S +G GK +SS+D+ +  R G G++A D  K    G 
Sbjct: 771 AAGDITPDRFEEMQAAENLILTISTEGAGKLSSSHDYPVRGRGGMGVQAMD--KAMRGGD 828

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LVA FPV  +DQI+L + +G  IRVPV+ I   SR+  GV +F T K E VVSV  I E 
Sbjct: 829 LVASFPVEIDDQIMLATSRGQSIRVPVDGISFRSRSAGGVKVFDTRKGEEVVSVAWIAEK 888

Query: 901 EIVDEAEST 909
              D+  ++
Sbjct: 889 GDQDDDAAS 897


>gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003]
 gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 913

 Score =  955 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/916 (51%), Positives = 633/916 (69%), Gaps = 11/916 (1%)

Query: 1   MTEHIISSDE--EEEKGITS----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+ I  +D   +  K        VSI +EM+ +YL YA++VI+ RAIPDLRDGLKP HR
Sbjct: 1   MTDIIDPTDPSGDTPKRAHHAGPVVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G   +K Y K AR  G+VMGKYHPHG+AAIYDAL RMAQD+S+ L L++GQ
Sbjct: 61  RILYAMHETGNTHDKPYRKSARPVGDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+
Sbjct: 121 GNFGSMDGDSAAAMRYTEVRMDKPAAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNM 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           LVNG GGIAVGMATNIP HNLGEV+D  +A+I+NPD+  +ALM+ + GPDFPTGA I+GR
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVIDATLALIENPDLSSEALMDYVPGPDFPTGAQIMGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            G + AY  GRGS++IR  + IE+   DR  I++ EIPYQVNKA M+EK+A+LVREK++ 
Sbjct: 241 GGARKAYLEGRGSVIIRAKTRIEEIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IA + DESDR G RVVIELKR A+ADV+LNQLYR+T LQ+ F  NM+ALNG +PE+ TL
Sbjct: 301 GIASIADESDRVGVRVVIELKRDATADVVLNQLYRFTPLQTSFGCNMLALNGGRPEQLTL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L  F+AFREEVV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR
Sbjct: 361 RDFLSHFIAFREEVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R W A +I + + LIDD  + +  DGT  LSEVQ RAIL+LRL RLT +G  ++ 
Sbjct: 421 DRLMERRWPAHEIVEYLRLIDDPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVT 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +EL  L  +I++ L IL+SR R++ II  EL  V+     PRRT IV+   D++DED I 
Sbjct: 481 DELAELAGKIRDYLAILASRERIMAIIATELREVRAAHAVPRRTEIVDWAGDLDDEDLIE 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           REDMVVT++  GY+KR PL+ +RAQRRGGKG + +  +++D VT LF+ +THT +LFF++
Sbjct: 541 REDMVVTITSGGYIKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTT 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  K WRLP+    ++GKA++NIL + QG  + ++MP  E E +W++  V FAT  
Sbjct: 601 DGMVYSLKCWRLPLAGRTSKGKAIVNILPIPQGVSVASLMPVDEPEETWDDFQVFFATSD 660

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+VRRN LSDF ++ ++GK AM+L     ++    C +E+DI+L T  G+ +RFP+  +R
Sbjct: 661 GDVRRNALSDFAKVMKNGKRAMELPEGVTLVDTRMCHEEDDIMLVTASGRAIRFPVPEVR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           +F GR+S GVRG+ LA+GD+V+SM+++ H +A+  ER  ++K   A+    + D  E   
Sbjct: 721 IFKGRSSTGVRGVRLAEGDKVVSMSVIRHFEAEPWERDAFVKRYRAELGGETEDEAETDR 780

Query: 775 LKNDSSV--EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              D +   EG +S+ R  E+   +  ILT++ KG GK +SS+ + +  R G+G+ A   
Sbjct: 781 DAEDEAEGGEGVLSDARYAEMLAAQDLILTITAKGLGKISSSHSYPVRGRGGQGVTA--F 838

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K    GALVA FPV   DQ++L +  G  IR PV  I   SRA  GV +F+T  +E VV
Sbjct: 839 EKSMRGGALVASFPVEPTDQVMLATSTGQSIRCPVAGISFRSRAAGGVKVFNTGAEEEVV 898

Query: 893 SVERIRESEIVDEAES 908
           SV R+ +    DEAE+
Sbjct: 899 SVARVADP-GDDEAEA 913


>gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
 gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 895

 Score =  955 bits (2467), Expect = 0.0,   Method: Composition-based stats.
 Identities = 509/910 (55%), Positives = 674/910 (74%), Gaps = 34/910 (3%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             + +  + +  IT V+I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + 
Sbjct: 2   TTLPASPQFD--ITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEA 59

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G  +NK + K ARI G+VMGKYHPHG++AIYDA+ RMAQ++S+RL L++GQGNFGS+DGD
Sbjct: 60  GYHFNKPFRKSARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGD 119

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL ++AH LL+D+ K+TVDF+ NYD S  EP+VL ARYPN+LVNG GGIA
Sbjct: 120 PPAAMRYTEARLARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+D C A ID+P++ ++ LME++ GPDFPTG  ILGR GI+ A  T
Sbjct: 180 VGMATNIPPHNLGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTILGRAGIRAAQLT 239

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+V+RG  HIE+   DRE IVVTEIPYQVNKA MLE+IAELVR+K+I  I+DLRDES
Sbjct: 240 GRGSVVMRGRVHIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDES 299

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+V+E+KR A A+V+L QLYR+T LQ+ F VN +ALNG +PE  TL  I+ AF+A
Sbjct: 300 DRDGVRMVVEIKRDAIAEVVLAQLYRFTPLQTSFGVNSLALNGGRPEMMTLRDIIVAFIA 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FREEV+ RRT + L KARDRAHVL GLAIAVAN+DEV+R+IR +P+P  AR +LM R+W 
Sbjct: 360 FREEVITRRTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWP 419

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             D++ LI LID+    I  DG   LSEVQ +AIL+LRL RLTGL RD I +EL  +G +
Sbjct: 420 VGDVEPLIRLIDEPGRAI-EDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQ 478

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+  L ILSSR RL+ +++ EL+ ++++  TPRRT I E   + + ED I REDMVVTV+
Sbjct: 479 IEAYLLILSSRPRLMEVMRGELMEIREQFATPRRTTIEENEFEADIEDLIAREDMVVTVT 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GY+KRVPLS YRAQ+RGGKGRSG+ ++DEDF+T +F+V+THT VLFFSS G  YK KV
Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKV 598

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +RLP+G+PQARGKA++N+L L+ GE I+TIMP PEDE++W +L+V+F T  G+VRRN LS
Sbjct: 599 YRLPLGNPQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRNPLS 658

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           DF ++  +GKIAMKL   + ++SV+TC+ + +D+LL T  G+ +RFP+  +R F  R+S 
Sbjct: 659 DFTEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSRDST 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L   D+VISM+I+ H D D + R  ++K                          
Sbjct: 719 GVRGIRLDGEDEVISMSILRHTDYDSETRDAFLK-------------------------- 752

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G++  ++  ++  ++QFILTV+E GFGKRTS++++RI+ R G GI   D++   + G +V
Sbjct: 753 GDLPADQMDKMVAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTA--KTGLVV 810

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--S 900
           A FPVN  D I+LVSD G LIR+PV++IRIA R T+GV +  TA++ERVVS  R+ +  S
Sbjct: 811 ASFPVNHEDDIMLVSDGGKLIRMPVDDIRIAGRKTQGVTLLRTAENERVVSAARLCDIGS 870

Query: 901 EIVDEAESTE 910
              +  E+ E
Sbjct: 871 NGDEPDETDE 880



 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 95/256 (37%), Gaps = 28/256 (10%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+ V+  G V+R PLS +   R  GK    +   +           +   VL  +  G  
Sbjct: 643 VMFVTSKGDVRRNPLSDFTEVRANGKIAMKLGEGERLISVQTCSAESDD-VLLATHRGKA 701

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------------- 638
            +  V  +     ++R    +  + L+  + + ++                         
Sbjct: 702 IRFPVQDVRE--FKSRDSTGVRGIRLDGEDEVISMSILRHTDYDSETRDAFLKGDLPADQ 759

Query: 639 -DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQEN 694
            D+      +++  T++G  +R    ++    R G     LD   +   V        E+
Sbjct: 760 MDKMVAEQQFILTVTENGFGKRTSAFEYRITGRGGSGIANLDMTAKTGLVVASFPVNHED 819

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           DI+L +  G+ +R P+  IR  AGR + GV  +  A+ ++V+S A +    ++ DE    
Sbjct: 820 DIMLVSDGGKLIRMPVDDIR-IAGRKTQGVTLLRTAENERVVSAARLCDIGSNGDEPDET 878

Query: 755 MKHMSAQRRLISGDTE 770
            +        ++G  +
Sbjct: 879 DEGAGDAAEDMAGGED 894


>gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2]
 gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2]
          Length = 889

 Score =  954 bits (2466), Expect = 0.0,   Method: Composition-based stats.
 Identities = 579/870 (66%), Positives = 706/870 (81%), Gaps = 2/870 (0%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY AL
Sbjct: 1   MSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGAL 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+ NY
Sbjct: 61  VRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L  LM
Sbjct: 121 DGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQVNK
Sbjct: 181 ELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+LNQLYRYT LQ+ F
Sbjct: 241 ASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSF 300

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
             NMVALNG KPE+ TL+ +L+AFVAFREEVV RRTK+LLNKARDRAHVLVGLAIAVAN+
Sbjct: 301 GCNMVALNGGKPEQLTLLDMLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD  +T+  D T  LSE Q RAI
Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L+LRL RLT LGRD++ +ELN +G EI++ LDIL SR R++ I+K+E+++V+DE  TPRR
Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATPRR 480

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I  G  +M+DED I REDMVVTVSH GY+KRVPL+ YRAQRRGGKGRSG+  ++EDFV
Sbjct: 481 TEIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFV 540

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
           T LF+ +THT VLFFSS G VYKEKVWRLP+G+PQ+RGKALIN+L L QGERITTIMP P
Sbjct: 541 TRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQSRGKALINMLPLQQGERITTIMPLP 600

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDI 696
           EDE SW NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL D  DEILSV+TCT+ +D+
Sbjct: 601 EDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDEGDEILSVDTCTEFDDV 660

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           LLT   GQC+RFP++ +RVFAGRNS+GVRGI+LA+GD+VISMAI+ H DA   ER  Y+K
Sbjct: 661 LLTCAGGQCIRFPVTDVRVFAGRNSIGVRGINLAEGDKVISMAILHHVDATPAERSAYLK 720

Query: 757 HMSAQRRLISGDT-EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              A+RR    D  ++I  +  D   E  +SE+R QELK +E+ +LTVSE G+GKR+SSY
Sbjct: 721 RSIAERRAQGADDADDIVVVGEDVDAEAELSEDRYQELKAREETVLTVSEFGYGKRSSSY 780

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +F IS R GKGIRATD SK +EIG LVA+FPV  +DQI+LVSD G LIRVPV+ IRIA R
Sbjct: 781 EFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDGGQLIRVPVDGIRIAGR 840

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +TKGV IF+TA  E+VVSVERI +++  +E
Sbjct: 841 STKGVTIFNTADGEKVVSVERISDADSDEE 870



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 648 VVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKL 702
           V+  ++ G  +R+   +F        G  A      DEI   +++      + ILL +  
Sbjct: 765 VLTVSEFGYGKRSSSYEFHISGRGGKGIRATDTSKTDEIGKLVALFPVEGSDQILLVSDG 824

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R P+  IR  AGR++ GV   + A G++V+S+  +  AD+D +             
Sbjct: 825 GQLIRVPVDGIR-IAGRSTKGVTIFNTADGEKVVSVERISDADSDEENGNGGDAAPEGDT 883

Query: 763 RLISGD 768
              + +
Sbjct: 884 PAATQE 889


>gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
 gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130]
          Length = 941

 Score =  952 bits (2461), Expect = 0.0,   Method: Composition-based stats.
 Identities = 558/889 (62%), Positives = 695/889 (78%), Gaps = 6/889 (0%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            ++SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++  K Y K A 
Sbjct: 38  ENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLDHTKSYRKSAA 97

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GEVMGKYHPHG+++IYDAL RMAQD+++R +LI+GQGNFGS+DGD PAA RYTECRL 
Sbjct: 98  VIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSIDGDKPAAMRYTECRLA 157

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + +  LLDD+ K+TVDF+ NYDGS +EP+VL ARYPN+LVNG GGIAVGMATNIP HNLG
Sbjct: 158 RISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAGGIAVGMATNIPPHNLG 217

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DGC+A+ID PDI+L  LME+I GPDFPTG +ILGR GIK+AY TGRGS+++RG +HI
Sbjct: 218 EVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMILGRAGIKSAYETGRGSVIMRGKAHI 277

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E +  DRE I++ E+PYQVNKA+M+EKIAELVR+KRI  I+ +RDESDRQGYRVVIE+KR
Sbjct: 278 ETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAVRDESDRQGYRVVIEVKR 337

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A AD++LNQLYRYT LQS F  N+VALNG KPE+  L+ +L+AFV FREEVV RRTK+L
Sbjct: 338 DAVADIVLNQLYRYTPLQSSFGCNLVALNGGKPEQMNLVDMLRAFVGFREEVVTRRTKFL 397

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           LNK R RAHVLVGLAIAVAN+DEV+ +IR +P+P TAR +LM+R W A D+  LI LIDD
Sbjct: 398 LNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLMERRWPAKDVAPLIALIDD 457

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             + I  DGT  LSE Q RAIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R
Sbjct: 458 PRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNLIGAEIADYLDILSSRAR 517

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L I++ EL  V++E   PRRT I++   + +DED I RE+MVVTV+H GY+KRVPL+ Y
Sbjct: 518 VLDIVRTELGEVREEFANPRRTEIIDSGYEHDDEDLIAREEMVVTVTHGGYIKRVPLAAY 577

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ RGGKGRSG+  +DEDFVT LF+V+THT VLFFS+ G  YK KVW+LP+  PQ RGK
Sbjct: 578 RAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIAYKLKVWKLPLAQPQGRGK 637

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A++N+L L  GE ITTIMP PEDE SW++L V+FAT  G VRRNKLSDF+Q+NR+GKIAM
Sbjct: 638 AMVNLLPLQAGETITTIMPLPEDEGSWDSLDVMFATTRGTVRRNKLSDFVQVNRNGKIAM 697

Query: 677 KL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           KL D  D I+ VE C+  +D+LLT+  G  +RFP+  +RVF  RNSVGVRGI +   D V
Sbjct: 698 KLDDENDGIIGVEVCSASDDVLLTSSAGYGIRFPVDDVRVFNSRNSVGVRGIRMGASDHV 757

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEERC 790
           ISMAI+    A  +ER+ Y+K  SA RR  S D  E     + +   + +V  ++ EER 
Sbjct: 758 ISMAIMRGFAATPEERVSYIKQASALRRAASADDGEDADLDVVADDEEVTVASSLPEERY 817

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+   EQFILT++++G+GKR+SSYDFR S R GKGI+ TDVSK  EIG LV  FPV D+
Sbjct: 818 IEMGAAEQFILTITDQGYGKRSSSYDFRKSGRGGKGIKVTDVSKEGEIGQLVGAFPVEDS 877

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           DQI+LVS+ G LIRVPV+ IR ASR+TKGV +F TAKDE VV+VERI E
Sbjct: 878 DQIMLVSNSGQLIRVPVDGIRFASRSTKGVRVFRTAKDESVVAVERISE 926


>gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131]
 gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a))
           [Rhodobacter sphaeroides KD131]
          Length = 920

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/919 (52%), Positives = 637/919 (69%), Gaps = 14/919 (1%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+      ++EE      G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRR
Sbjct: 1   MTDRPEEPGDDEEMGRPLSGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQG
Sbjct: 61  ILYAMHETGNTSDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+L
Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNML 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG GGIAVGMATNIP HNLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRS 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + AY  GRGS+++R  + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  
Sbjct: 241 GARKAYLEGRGSVIMRAKARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           IA ++DESDR G RVVIELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL 
Sbjct: 301 IAHVQDESDRVGVRVVIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L  F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR 
Sbjct: 361 DFLIHFLTFREDVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R W A+DI D I LIDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +
Sbjct: 421 RLMTRRWPAADIADYIRLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTD 480

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +I++ LDIL SR R++ II  EL  VKD    PRRT I E   D+EDED I R
Sbjct: 481 ELAELAAKIRDYLDILGSRERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIER 540

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMVVT++  GY+KR PL+ +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ 
Sbjct: 541 EDMVVTITSGGYIKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTD 600

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY  K WRLP+G   A+GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G
Sbjct: 601 GMVYDLKCWRLPLGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           +VRRN+LSDF  + R+GKIAMKL     +++V  C +++D+++ T LG+ +RFP + +RV
Sbjct: 661 DVRRNRLSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFPTTDVRV 720

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           F+GR+S GVRGI LA GD+V+SM+++ H +AD  ER  Y+K     R +     E     
Sbjct: 721 FSGRDSTGVRGIRLASGDRVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADE 777

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           + D+   G +S  R  E+   E  ILT++ +G GK +SS+D+ +  R G+G+ A    K 
Sbjct: 778 EEDAVEAGQLSPTRYAEMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKS 835

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G LVA FPV  +DQ++L +  G  IRVPV +I   SR+  GV +F T   E VVSV 
Sbjct: 836 MRGGQLVASFPVEMSDQVMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVA 895

Query: 896 RIRE----SEIVDEAESTE 910
           RI +    ++ V++AE  E
Sbjct: 896 RIADAGDTADGVEDAEPGE 914


>gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222]
 gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222]
          Length = 913

 Score =  952 bits (2460), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/918 (52%), Positives = 635/918 (69%), Gaps = 15/918 (1%)

Query: 1   MTEHIISSDEEEEKGITS----------VSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +   + D+  E G +           + I  EM++SYL YA++VI+ RAIPDLRDGLK
Sbjct: 1   MADIPENDDDTPENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+LF M + G   +K Y K AR  G+ MGKYHPHG+A+IYDAL RMAQD+S+ L L
Sbjct: 61  PVHRRVLFAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS+DGD PAA RYTE R+ K + +LL D+ KDTV+F+ NYDG  +EP VL AR
Sbjct: 121 LDGQGNFGSMDGDSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPAR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+EI+ GPDFPTG +
Sbjct: 181 FPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGI 240

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+G + AY  GRGSI++R  + IE+T   R+ I++ EIP+QVNKA+++EKIAEL +E
Sbjct: 241 ILGRSGARKAYLEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKE 300

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           KRI  IA ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE
Sbjct: 301 KRIEGIAHVQDESDRVGVRVVIELKRDATAEVVLNQLFRFTPMQTSFGANMLALNGGRPE 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + TL   L  F+ FREEVV RRT Y L KAR+RAHVL GLA+AV+N+DEVV  IR S + 
Sbjct: 361 QLTLRDFLTHFLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADA 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
             AR  LM R W A +I + + LIDD  + +  DGT  LSE Q RAILELRL RLT LG 
Sbjct: 421 AEARERLMTRRWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGV 480

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
            ++ +EL SL   I+E L IL+SR R++GII  EL  VK+    PRRT I +   D++DE
Sbjct: 481 QEVTDELKSLAEAIREFLAILASRERIMGIISDELREVKNLFAVPRRTEITDWAGDLDDE 540

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I REDMVVT++  GY+KR  L+ +RAQRRGGKG SG+  +++D VT LF+ +THT +L
Sbjct: 541 DLIEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELL 600

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K WRLP+G   A+GKA++NIL +  G  I  +MP    +S W+   V+F
Sbjct: 601 FFTTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIF 660

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  G+VRRN LSDF  + R+GKIAMKL    E++     T+ +D++L T  G+ +RF  
Sbjct: 661 STSEGDVRRNALSDFANVMRNGKIAMKLPEGVELIGARMATESDDVMLFTAAGRAIRFQT 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF GR+S GVRGI LA GD+V+SM+I+ H +AD  ER  Y+K   A    +    E
Sbjct: 721 TDVRVFKGRDSTGVRGIRLASGDRVVSMSIIRHFEADAGERAAYLKMRRAVEGALDDGAE 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                  D+ VE  IS+ER  E+   E  ILT++ +G GK +SS+D+ +  R G+G+ A 
Sbjct: 781 --ADEDEDNVVEAAISQERYAEMSAAEDLILTITARGAGKISSSHDYPVRGRGGQGVMAM 838

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G LVA FPV+ +DQI+L +  G  IRVPV+ I   SR+  GV +F+TA  E 
Sbjct: 839 D--KAMRGGPLVASFPVDRDDQIMLATSTGQSIRVPVDGISFRSRSAGGVRVFNTAPGEE 896

Query: 891 VVSVERIRESEIVDEAES 908
           VVSV RI E+   DEAE+
Sbjct: 897 VVSVARIAEN-GEDEAEA 913


>gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
 gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035]
          Length = 899

 Score =  951 bits (2459), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/891 (53%), Positives = 620/891 (69%), Gaps = 7/891 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR 
Sbjct: 15  SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 75  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ K+TV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+IDNPD++ + L++ I GPDFPTG ++LGR+G + AY  GRGS++IR  +  E
Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAKTRTE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I++ EIPYQVNKA M+E+IAE  R+KRI  IA ++DESDR G RVVIELKR 
Sbjct: 255 EIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELKRD 314

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR+T +Q+ F  NM+ALNG KPE+ TL   L  F+ FREEVV RRT Y L
Sbjct: 315 ATAEVVLNQLYRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFITFREEVVARRTAYDL 374

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+RAHVL GLA+AV+N+DEVV  IR S +   AR++LM+R W A DI   I LIDD 
Sbjct: 375 RKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALIDDP 434

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           S+   +DGT  LSEVQ RAIL+LRL RLT LG  ++ +EL  L  +IKE L IL+SR R+
Sbjct: 435 SHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASRERI 494

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + II  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 495 MQIISDELREVRELFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTALADFR 554

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  +DED VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA
Sbjct: 555 AQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRLPLGGRTSKGKA 614

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP    E  W +L +VFAT  G+VRRN LSDF  + R+GKIAM 
Sbjct: 615 IVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALSDFTNVMRNGKIAMD 674

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C  E+D++L T  G+ +RFP + +RVF GR S GVRGI L   D+V+S
Sbjct: 675 LPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTGVRGIRLLGDDRVVS 734

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M+++ H DA  D+R  Y+K      R      E+  +  ++ + +  +S E+  E++  E
Sbjct: 735 MSVIRHFDASADDRAAYLKM-----RRQLAGAEDDGTSDDEGNADAALSAEQFAEMQAAE 789

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT++ +G GK +SS+D+ +  R G G++A D  K    G +VA FPV   DQI+L +
Sbjct: 790 NLILTITARGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVASFPVTLEDQIMLAT 847

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            KG  IRVPV  I   SR+  GV +F+T   E VVSV  I E    DE   
Sbjct: 848 SKGQSIRVPVMGISFRSRSAGGVKVFNTGAGEEVVSVAWIAEQAEEDETAE 898


>gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
 gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551]
          Length = 1016

 Score =  950 bits (2456), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/921 (41%), Positives = 568/921 (61%), Gaps = 65/921 (7%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           I+   ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ 
Sbjct: 128 IVRPMDQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELN 187

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD 
Sbjct: 188 NDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDN 247

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR PN+L+NG  GIAV
Sbjct: 248 AAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAV 307

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TG
Sbjct: 308 GMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTG 367

Query: 245 RGSIVIRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RG +V+R  +H E     + Q I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDES
Sbjct: 368 RGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDES 427

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           D+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+ 
Sbjct: 428 DKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLL 487

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW+
Sbjct: 488 HRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWD 547

Query: 424 ASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           +  ++D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL
Sbjct: 548 SGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGL 607

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++
Sbjct: 608 EQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELD 667

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  
Sbjct: 668 TEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDY 727

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V
Sbjct: 728 ILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFV 784

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF
Sbjct: 785 FMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRF 844

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +G QVI+M +     A   E+                 
Sbjct: 845 DENDVRPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS------------ 891

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 892 -------------------------------VLTATENGYGKRTPISEYTRHGRGTKGMI 920

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  + 
Sbjct: 921 AIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEG 978

Query: 889 ERVVSVERIRESEIVDEAEST 909
            ++  ++R+ ES+   E  + 
Sbjct: 979 NKLSGLQRVVESDAEGEDAAD 999



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 13/244 (5%)

Query: 533  IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 778  FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 835

Query: 593  SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
            S  G   +     +     QARG   +N   L +G+++  ++  P + +          V
Sbjct: 836  SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 892

Query: 649  VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
            + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 893  LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 952

Query: 706  VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++    +     +    
Sbjct: 953  IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGVTESDGEAPSA 1011

Query: 766  SGDT 769
                
Sbjct: 1012 DTTE 1015


>gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040]
 gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040]
          Length = 912

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 483/919 (52%), Positives = 636/919 (69%), Gaps = 17/919 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++   + +  +E           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPETPENPDENLPQRPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+E + GPDFPTG V+LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYVPGPDFPTGGVMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI
Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRKFLTSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A+DI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT LG  ++
Sbjct: 421 RHKLMTRRWPAADIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+ILSSR R++ II  EL  V++    PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLEILSSRERIMSIIADELAEVRESFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP G   ++GKA++NIL +  G  I  IMP   DE  W++L ++FAT 
Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN+LSDF  + R+GKIAMK +      ++++   C++++DI+L T  G+ +RFP 
Sbjct: 661 AGTVRRNRLSDFTNVMRNGKIAMKFEDENQGTKLINARICSEDDDIMLVTNTGRAIRFPT 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  RNSVGVRGI L + D+V+SM+++ H+    ++R  Y+K   A   L   D  
Sbjct: 721 TEVRVFNSRNSVGVRGIKLGEDDEVVSMSVIRHSKYTPEQRSAYLKMRRAMAGLTDEDAS 780

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                  D+  + N S E   E+   E  ILT++  G GK +SS+D+ +  R G G+ A 
Sbjct: 781 -----DEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAM 835

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    GALVA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV IF+T K E 
Sbjct: 836 D--KAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEE 893

Query: 891 VVSVERIRESEIVDEAEST 909
           VVSV  I ++   +E    
Sbjct: 894 VVSVAWIADNGDDEETVEE 912


>gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217]
 gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217]
          Length = 899

 Score =  950 bits (2455), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/907 (53%), Positives = 627/907 (69%), Gaps = 10/907 (1%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                +     G  SVSIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + 
Sbjct: 2   DETPPERPSYSG-PSVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEG 60

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD
Sbjct: 61  GNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGD 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K A +LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG GGIA
Sbjct: 121 NAAAMRYTEVRMDKPAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEVVD  +A+I+NPD++ + L++ I GPDFPTG ++LGR+G + AY  
Sbjct: 181 VGMATNIPPHNLGEVVDATLALIENPDLESEDLIQYIPGPDFPTGGLMLGRSGARKAYLE 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS++IR  + +E+   DR  I++ EIPYQVNKA M+E+IAE  REKRI  I+ ++DES
Sbjct: 241 GRGSVIIRAKTRVEEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDES 300

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ TL   L  F+ 
Sbjct: 301 DRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLTLHRFLSLFIV 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FREEVV RRT + L +AR+RAHVL GLA+AV+N+DEVV  IR S +   AR +LM+R W 
Sbjct: 361 FREEVVARRTAFELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWP 420

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           A +I   I LIDD S+    DGT  LSEVQ RAIL+LRL RLT LG  ++ +EL  L  +
Sbjct: 421 AREILPYIALIDDPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGK 480

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IKE L IL+SR R++ II  EL  V+D    PRRT+IV+   DMEDED I REDMVVTV+
Sbjct: 481 IKEYLAILASRERIMQIISDELREVRDLFAVPRRTQIVDWSGDMEDEDLIEREDMVVTVT 540

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR  L+ +RAQ+RGGKG SG+  +DED VT LF+ +THT +LFF++ G VYK K 
Sbjct: 541 SGGYIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKT 600

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           WRLP+G   ++GKA++NIL +  G  I  IMP    E  W +L +VFAT  G+VRRN LS
Sbjct: 601 WRLPLGGRTSKGKAIVNILPIPTGVSIAAIMPVDRPEEDWEDLQIVFATSAGDVRRNALS 660

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF  + R+GKIAM L    E+++   C  E+D++L T  G+ +RFP + +RVF GR S G
Sbjct: 661 DFTNVMRNGKIAMDLPEGVELVNARICGPEDDVMLVTDSGRAIRFPTTEVRVFKGRKSTG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L   D+V+SM+++ H DA  DER  Y+K      R      +E  +  ++ + + 
Sbjct: 721 VRGIRLLGNDRVVSMSVISHFDASADERAAYLKM-----RRQLAGADEDAAADDEGNADA 775

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            IS ER +E++L E  ILT++ KG GK +SS+D+ +  R G G++A D  K    G +VA
Sbjct: 776 AISPERFEEMQLAENLILTITAKGTGKLSSSHDYPVRGRGGMGVQAMD--KGMRGGTVVA 833

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            FPV   DQI+L + KG  IRVPV  I   SR+  GV +F+T   E VVSV  I E    
Sbjct: 834 SFPVTLEDQIMLATSKGQSIRVPVMGISFRSRSAGGVKVFNTGTGEEVVSVAWIAEQ--A 891

Query: 904 DEAESTE 910
           DE E+ E
Sbjct: 892 DEDETAE 898


>gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides
           2.4.1]
          Length = 907

 Score =  948 bits (2451), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/901 (53%), Positives = 629/901 (69%), Gaps = 9/901 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K
Sbjct: 6   SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  
Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIE
Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT
Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I L
Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRL 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL S
Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL
Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A
Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GK
Sbjct: 606 KGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD
Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM+++ H +AD  ER  Y+K     R +     E     + D+   G +S  R  E+
Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A    K    G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKSMRGGQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    +E V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756]
 gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756]
          Length = 918

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 502/917 (54%), Positives = 659/917 (71%), Gaps = 9/917 (0%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++       +     I  ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF 
Sbjct: 1   MSDEHTTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G    + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGS
Sbjct: 61  MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTECR+   A  LL DL KDTVDF  NYDG  QEP VL AR PN+LVNG 
Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+ +ID P+I  D L++++ GPDFPTG  I+GR G + 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEIIGRAGPRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A  TGRGS+++RGV+ +E     RE I+VTEIPYQVNKA ++E IAELVR+K++  IAD+
Sbjct: 241 ALLTGRGSVIMRGVASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+R G R+VIELKR AS +VILNQLYR+T+LQS F VNM+ALN  +PE+  L  +L+
Sbjct: 301 RDESNRDGMRIVIELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHKLLQ 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ 
Sbjct: 361 LFVEFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVA 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +SW A D+  L++LI D        G + L++ Q RAIL L L+RLTGLGR++I NE  +
Sbjct: 421 KSWPAGDMLPLVELIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAET 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I+  L++LS R+ ++ ++++EL+ V+++   PRR +IV+G  DMEDED IVREDMV
Sbjct: 481 LADAIRGYLELLSDRANIMAVVREELVEVREKFAVPRRCQIVDGDADMEDEDLIVREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TV+  GYVKR PL+ YR Q RGGKG+SG+  ++ED VT +F  STH  +LFF+S G VY
Sbjct: 541 ITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+G   +RGKA +N+L +  GE IT+I+  PEDE++W+ L V+FAT+ G+VRR
Sbjct: 601 KMKVWRLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + R+GKIAMKLD  D I+ V  C  + D+LLTT  G+C+RF +  +RVFA R
Sbjct: 661 NKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT---SLK 776
           +S GVRG+ LA+GD+VISMA++   DA   ER  Y+KH  A  R    + ++        
Sbjct: 721 DSTGVRGVRLAEGDEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEGDDAPVAAEEG 780

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + + E  +S ER  EL   E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK  
Sbjct: 781 EEDADETTLSPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKR- 839

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G LV  FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVER
Sbjct: 840 -GGRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVER 898

Query: 897 IRESEIVD---EAESTE 910
           + +S   D   E    E
Sbjct: 899 LADSGGDDNQGEDSGAE 915


>gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029]
          Length = 907

 Score =  948 bits (2450), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/901 (53%), Positives = 629/901 (69%), Gaps = 9/901 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K
Sbjct: 6   SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  
Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIE
Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT
Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I L
Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRL 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL S
Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL
Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A
Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++NIL +  G  I  +M   E E  W+ L VVFAT  G+VRRN+LSDF  + R+GK
Sbjct: 606 KGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD
Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM+++ H +AD  ER  Y+K     R +     E     + D+   G +S  R  E+
Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A    K    G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKSMRGGQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    +E V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003]
          Length = 883

 Score =  947 bits (2448), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/886 (52%), Positives = 620/886 (69%), Gaps = 5/886 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ +YL YA++VI+ RAIPDLRDGLKP HRRIL+ M + G   +K Y K AR  G+VMGK
Sbjct: 1   MKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+AAIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K A FLL 
Sbjct: 61  YHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D  +A
Sbjct: 121 DIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD+  +ALM+ + GPDFPTGA I+GR G + AY  GRGS++IR  + IE+   DR 
Sbjct: 181 LIENPDLSSEALMDYVPGPDFPTGAQIMGRGGARKAYLEGRGSVIIRAKTRIEEIRKDRF 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++ EIPYQVNKA M+EK+A+LVREK++  IA + DESDR G RVVIELKR A+ADV+L
Sbjct: 241 AIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELKRDATADVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+AFREEVV RRT Y L KAR+R+
Sbjct: 301 NQLYRFTPLQTSFGCNMLALNGGRPEQLTLRDFLSHFIAFREEVVARRTAYELRKARERS 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GLA+AV+N+DEVV  IR S +P  AR  LM+R W A +I + + LIDD  + +  D
Sbjct: 361 HILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSEVQ RAIL+LRL RLT +G  ++ +EL  L  +I++ L IL+SR R++ II  E
Sbjct: 421 GTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  V+     PRRT IV+   D++DED I REDMVVT++  GY+KR PL+ +RAQRRGGK
Sbjct: 481 LREVRAAHAVPRRTEIVDWAGDLDDEDLIEREDMVVTITSGGYIKRTPLAEFRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+    ++GKA++NIL +
Sbjct: 541 GLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKAIVNILPI 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            QG  + ++MP  E E +W++  V FAT  G+VRRN LSDF ++ ++GK AM+L     +
Sbjct: 601 PQGVSVASLMPVDEPEETWDDFQVFFATSDGDVRRNALSDFAKVMKNGKRAMELPEGVTL 660

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +    C +E+DI+L T  G+ +RFP+  +R+F GR+S GVRG+ LA+GD+V+SM+++ H 
Sbjct: 661 VDTRMCHEEDDIMLVTASGRAIRFPVPEVRIFKGRSSTGVRGVRLAEGDKVVSMSVIRHF 720

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNISEERCQELKLKEQFILT 802
           +A+  ER  ++K   A+    + D  E      D +   EG +S+ R  E+   +  ILT
Sbjct: 721 EAEPWERDAFVKRYRAELGGETEDEAETDRDAEDEAEGGEGVLSDARYAEMLAAQDLILT 780

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++ KG GK +SS+ + +  R G+G+ A    K    GALVA FPV   DQ++L +  G  
Sbjct: 781 ITAKGLGKISSSHSYPVRGRGGQGVTA--FEKSMRGGALVASFPVEPTDQVMLATSTGQS 838

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           IR PV  I   SRA  GV +F+T  +E VVSV R+ +    DEAE+
Sbjct: 839 IRCPVAGISFRSRAAGGVKVFNTGAEEEVVSVARVADP-GDDEAEA 883


>gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
 gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187]
          Length = 862

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/906 (43%), Positives = 577/906 (63%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEIIPINIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMDRIAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDGC+A+++N ++ +D L+++I GPDFPTG +I GR+GI +AY TGRG I +R  
Sbjct: 186 NLTEVVDGCLALMENSELTIDELIQLIPGPDFPTGGIINGRSGILDAYRTGRGKIYVRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      +E I+VTE+PY VNKA ++EKIAELV++K+I  I  LRDESD+ G RVVI
Sbjct: 246 TEIETDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY +T +Q++F +NMVAL   +P+   L  IL AF+  R EVV RR
Sbjct: 306 ELRRGELTEVMLNNLYTHTQMQNVFGINMVALVNGQPKTLNLKEILAAFIDHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLAIA+AN+D V+ +I+ S +P  A++ L+ R W    + ++++
Sbjct: 366 TVFELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             D   +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 426 RAGGDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I++EL  VK +    RRT I    +++  ED I  ED+VVT+SH
Sbjct: 486 AELLRILASPERLMEVIREELEFVKSQFGDKRRTEIQAASIEINMEDLITPEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y AQRRGG+G++   ++DEDFV  L + +TH ++L FS+ G VY  KV+
Sbjct: 546 EGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L++ ERIT I+P    +   ++ YV FAT  G V++ +LS 
Sbjct: 606 QLPEASRTARGRPIINLLPLDENERITAILPVKSYD---DDKYVFFATGDGTVKKTELSA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   SG  A+ L+  D ++ V      ++I+L +  G+ VRF  S +R   GR + GV
Sbjct: 663 YSRPLSSGIRAINLNEGDSLIGVAITDGNSEIMLFSDAGKVVRFNESDVRSM-GRTATGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L + D+V+S+ +  +  A                                      
Sbjct: 722 RGMKLGETDKVVSLIVPQNGGA-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++ + +R+  G+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATENGYGKRTDLAEYPVKSRATLGVISIQVTERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+++D+I+L+++ GTL+R  V+E+ +  R T GV +  TA+DE++VS+ER+ E E  +
Sbjct: 787 IQVDESDEIMLITNAGTLVRTRVSEVGLIGRNTAGVRLIRTAEDEKLVSLERVAEPEGDE 846

Query: 905 EAESTE 910
                +
Sbjct: 847 SDAEGD 852


>gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3]
 gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 891

 Score =  947 bits (2447), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/880 (53%), Positives = 619/880 (70%), Gaps = 3/880 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 5   VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 65  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A FLL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+ID+PD+  + L++ + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E+
Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRAKTRVEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  I+V EIPYQVNKA M+EKIAE VREKRI  +A ++DESDR G RVV+ELKR A
Sbjct: 245 LRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELKRDA 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L  F+ FREEVV RRT + L 
Sbjct: 305 TPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLTLRRFLTCFIDFREEVVARRTAHDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR +LM R W A+DI   + LIDD  
Sbjct: 365 KARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLIDDPL 424

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             +  DGT  L+EVQ RAIL+LRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 425 SKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRERIM 484

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           GII  EL  V+++   PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +RA
Sbjct: 485 GIIADELREVREQFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRA 544

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA+
Sbjct: 545 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 604

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP    +  W+ L +VFAT  G+VRRN LSDF  + R+GKIAMKL
Sbjct: 605 VNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTNVKRNGKIAMKL 664

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
               E+++   C++E+D++L T  G+ +RFP + +RVF GR+S GVRGI L  GD+V+SM
Sbjct: 665 PEDVELVNARICSEEDDVMLITNSGRAIRFPTTDVRVFKGRDSTGVRGIRLQNGDRVVSM 724

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           +++ H +A+  ER  ++K           + +   + ++    EG +++ER QE++  + 
Sbjct: 725 SVIRHFEAEPWERAEFIKRFRTILGA-EMEDDAAETDEDAVEGEGVLTDERYQEMQDAQD 783

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILT++  G GK +SS+D+ +  R G+G++A         G L A FPV  +DQI+L + 
Sbjct: 784 LILTITVTGLGKLSSSHDYPVRGRGGQGVKAISAGPR--GGTLAASFPVLMDDQIMLATS 841

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            G  IRVPV  I   SR+  GV +F+T+K E VVSV RI 
Sbjct: 842 GGQSIRVPVEGISFRSRSAGGVRVFNTSKGEEVVSVARIA 881


>gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
 gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236]
          Length = 884

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/900 (45%), Positives = 571/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A+I++ +I +D LME I GPDFPT A+I GR GI  AY TGRG I +R  +
Sbjct: 187 LSEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAIINGRRGIDEAYRTGRGKIYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKEILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847


>gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
 gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM]
          Length = 906

 Score =  946 bits (2446), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/893 (52%), Positives = 632/893 (70%), Gaps = 7/893 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 1   MTIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD  AA RYTE R+ K 
Sbjct: 61  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ KDTV+F+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 121 ASALLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+IDNPD+  + L++ + GPDFPTGA++LGR+G + AY  GRGS++IR  + +E+
Sbjct: 181 VDATLALIDNPDLSSEELIDYVPGPDFPTGAIMLGRSGARKAYLEGRGSVIIRAKTRVEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNKA+M+EKIAE  REKRI  IA ++DESDR G RVV+ELKR A
Sbjct: 241 IRRDRWAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL G L AF+AFREEVV RRT Y L 
Sbjct: 301 TAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRGFLTAFIAFREEVVARRTAYDLR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM+R W A DI + I LIDD +
Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPT 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L IL+SR R++
Sbjct: 421 HRANDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIM 480

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  V+D+   PRRT I +   DM+DED I RE+MVVTV+  GY+KR  L+ +RA
Sbjct: 481 EIIADELREVRDQFAVPRRTEITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTALADFRA 540

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G  YK K WRLP G   A+GKA+
Sbjct: 541 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTAKGKAI 600

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  +  IMP    E  WN+L +VFAT  G VRRN+LSDF  +  +GKIAMK 
Sbjct: 601 VNILPIPTGVSVAAIMPVDRPEEEWNDLQIVFATDAGTVRRNRLSDFTNVKSNGKIAMKF 660

Query: 679 DSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  +    +++   C++E+D++L T  G+ +RFP + +RVF  RNSVGVRGI L+  D+V
Sbjct: 661 EDENAGMSLINARICSEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKV 720

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H +A  +ER+ Y+K       L   + E  +  +++++V G +S ER  E+  
Sbjct: 721 VSMSVIRHFEASSEERVAYLKQRRLMAGLT--EDEAASDDEDETAVAGQLSPERYAEMSA 778

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++ KG GK +SS+D+ +  R G G+ A   +K    G ++A FPV   DQ++L
Sbjct: 779 VENLILTITAKGAGKLSSSHDYPVRGRGGLGVTAW--TKSMSNGPIIACFPVEMPDQVML 836

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            + KG  IR+PV+ I   SR+  GV +F+T K+E VVSV  I +    DE E+
Sbjct: 837 ATSKGQSIRIPVDGISFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEA 889



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 83/246 (33%), Gaps = 25/246 (10%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYR------AQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED V+ V++ G   R P +  R      +    G   SG        V   F  S+  
Sbjct: 676 SEEDDVMLVTNSGRAIRFPTTDVRVFNSRNSVGVRGIRLSGEDKVVSMSVIRHFEASSEE 735

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V +      +           S      A+   LS  +   ++ +              
Sbjct: 736 RVAYLKQRRLMAGLTEDEA--ASDDEDETAVAGQLSPERYAEMSAVENL----------- 782

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD----SRDEILSVETCTQENDILLTTKLG 703
           ++  T  G  + +   D+  +   G + +       S   I++       + ++L T  G
Sbjct: 783 ILTITAKGAGKLSSSHDYP-VRGRGGLGVTAWTKSMSNGPIIACFPVEMPDQVMLATSKG 841

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +R P+  I  F  R++ GVR  +  K ++V+S+A +     + ++         AQ +
Sbjct: 842 QSIRIPVDGI-SFRSRSAGGVRVFNTGKNEEVVSVAWIADRGDEDEDEAQTENQTEAQDQ 900

Query: 764 LISGDT 769
                 
Sbjct: 901 SPPDQD 906


>gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 926

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 522/926 (56%), Positives = 681/926 (73%), Gaps = 18/926 (1%)

Query: 1   MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           M++     DE E           + GI  +SI  E+++SYL YA++VI+ RA+PD+RDGL
Sbjct: 1   MSDPTTPPDEPETPENGAGKPPPQDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRILF M + G   +K Y K ARI G+V+GKYHPHG++A+YDAL RMAQ +S+ + 
Sbjct: 61  KPVHRRILFAMNEGGNTPDKPYSKSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGS+D DPPAA RYTE R+ K    LL DL KDTVDF+ NYDG  +EPVVL A
Sbjct: 121 LVDGQGNFGSIDNDPPAAMRYTESRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPA 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           ++PN+LVNGGGGIAVGMATNIP HNLGE++D  +A+I++P I  +AL EI+ GPDFPTGA
Sbjct: 181 QFPNLLVNGGGGIAVGMATNIPPHNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +I+G++G + A  TGRGS+++R  + IE+    RE I+V+EIPYQVNKAAM+ KIAELVR
Sbjct: 241 LIMGQSGSRKALMTGRGSVIMRSKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVR 300

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           EK+I  I+DLRDESDR G RVVIELKR ASADV+LNQLYR++ LQS F+VNM+ALNG +P
Sbjct: 301 EKKIEGISDLRDESDRNGIRVVIELKRDASADVVLNQLYRFSQLQSSFAVNMLALNGGRP 360

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           E   L  +L+ F+ FREEV+VRRTK+ L KARDRAHVLVGLA+AVAN+DEV+R+IR SP+
Sbjct: 361 ELMNLRKVLEYFITFREEVIVRRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPD 420

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIG-SDGTMYLSEVQTRAILELRLARLTGL 468
           P TAR+ L+ ++W   D+  LIDLI D     G  +GT+YLS+ Q R+IL L L RLTGL
Sbjct: 421 PATARQRLLDKAWPQQDMGPLIDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
           GRD+I NE   L  +I E L+IL SR R+LGIIK EL  VK++   PRR++ V+G +DME
Sbjct: 481 GRDEIGNEAKGLADKIAEYLEILRSRPRILGIIKAELAEVKEKFAVPRRSQFVDGGVDME 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I  EDMVVTV+H GYVKR PLS YR Q RGGKGRSG+ M+DEDF+  +F  +THT 
Sbjct: 541 DEDLIEVEDMVVTVTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTE 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFFSS G VYKEKVWRLPIG P +RGKAL+NI  L   ERI ++MP P+ E +  +L V
Sbjct: 601 ILFFSSAGMVYKEKVWRLPIGGPTSRGKALVNIFPLAADERIESVMPLPDSEEAAEHLDV 660

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +FAT+ GNVRRN+L+DF ++NR+GKIAMKLD  D I+SV+ C++++D+LLTT LGQ +RF
Sbjct: 661 MFATRSGNVRRNRLADFTRVNRAGKIAMKLDEGDGIVSVQLCSEKDDVLLTTALGQAIRF 720

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ +RVFAGR+S GVRGI L   D VISM I+ H     +E   Y+KH +A RR ++G+
Sbjct: 721 AVTDVRVFAGRDSTGVRGIRLGAEDTVISMGILRHMGVTSEEARAYLKHAAAMRRAVTGE 780

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            EEI+  +++   E  +S ER  EL   E+FI TV++ G GKR+S+YD+R++ R GKG+ 
Sbjct: 781 EEEISDDEDEVVAEAALSAERIAELGAAEEFIFTVADDGMGKRSSAYDYRVTGRGGKGLV 840

Query: 829 ATDVSKINEIG----ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A ++   ++ G     +   FPV D D+++LV+D G LIR PV++IRIA R+T GV +  
Sbjct: 841 AQNIWGRDKKGGPVKKVAQSFPVGDGDEVMLVTDGGQLIRTPVDQIRIAGRSTGGVWVLR 900

Query: 885 TAKDERVVSVERIRESEIV--DEAES 908
           T   ERVVS  R+ +      D+AE 
Sbjct: 901 TGDGERVVSAARLVDDGEGGMDKAEG 926


>gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B]
          Length = 928

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 486/918 (52%), Positives = 638/918 (69%), Gaps = 17/918 (1%)

Query: 2   TEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           ++   + +  +E           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHR
Sbjct: 18  SDTPETPENPDENLPARPSYDGPTVSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHR 77

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQ
Sbjct: 78  RILYAMHETGNSHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQ 137

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF+ NYDG  +EP VL AR+PN+
Sbjct: 138 GNFGSMDGDNPAAMRYTEVRMDKPAAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNM 197

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L++ + GPDFPTG V+LGR
Sbjct: 198 LVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGR 257

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +G + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI 
Sbjct: 258 SGARKAYLEGRGSVIIRAKTRVEEIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIE 317

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            +A ++DESDR G RVV+ELKR A+A+V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL
Sbjct: 318 GVAHVQDESDRNGVRVVVELKRDATAEVVLNQLYRFTPMQTSFGCNMLALNGGRPEQLTL 377

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR
Sbjct: 378 RKFLTSFIDFREDVVARRTAYNLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAR 437

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           ++LM R W ASDI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT LG  ++ 
Sbjct: 438 QKLMTRRWPASDIAGYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVT 497

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +EL  L  +IKE L+ILSSR R++GII  EL  V++    PRRT IV+   DM+DED I 
Sbjct: 498 DELEELAAKIKEYLEILSSRERIMGIIADELTEVRNSFAVPRRTEIVDWSGDMDDEDLIE 557

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT LF+ +THT +LFF++
Sbjct: 558 REDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTT 617

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VYK K WRLP G   A+GKA++NIL +  G  I  IMP    E  WN+L ++FAT  
Sbjct: 618 DGMVYKLKTWRLPQGGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSA 677

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPIS 711
           G VRRN+LSDF  + R+GKIAMK +  +E   +++   C++++DI+L T  G+ +RFP +
Sbjct: 678 GTVRRNRLSDFTNVMRNGKIAMKFEDDNEGTKLINARICSEDDDIMLVTNTGRAIRFPTT 737

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +RVF  RNSVGVRGI L  GD+V+SM+++ H+    ++R  Y+K   A   L   D   
Sbjct: 738 EVRVFNSRNSVGVRGIKLGDGDEVVSMSVIRHSKYTPEQRTAYLKMRRAMAGLTDEDAS- 796

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                 D+  + N S E   E+   E  ILT++  G GK +SS+D+ +  R G G+ A D
Sbjct: 797 ----DEDAVEDPNFSTELFAEMSAAENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD 852

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             K    GALVA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV IF+T K E V
Sbjct: 853 --KAMRGGALVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVRIFNTGKGEEV 910

Query: 892 VSVERIRESEIVDEAEST 909
           VSV  I ++   +E    
Sbjct: 911 VSVAWIADNGDDEETVEE 928


>gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
 gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909]
          Length = 890

 Score =  946 bits (2445), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/905 (45%), Positives = 574/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A+I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+  SW   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847

Query: 906 AESTE 910
               E
Sbjct: 848 ILDGE 852



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 133/417 (31%), Gaps = 38/417 (9%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K     H    L      L  +  +I    NP+     + +      +  +     +
Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDARRTE 520

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490
            ++ T   +    +++      L  +               R         IKE   I  
Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDR 580

Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542
               ++   +L    +  L        P  +R   G   +        E +   +     
Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640

Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                    +  G VK+  L+ +   R  G     +   DE    DL        V+ FS
Sbjct: 641 EEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG V +    ++      A G   +  ++LN  +R+ +++          +  ++  T+
Sbjct: 699 ALGKVVRFPESQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+ +  + +       +++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           S +    GRN+ GV  I  A+ + V+ +  V   + D +                + 
Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDGEEGGEDNAA 865


>gi|16125827|ref|NP_420391.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|221234588|ref|YP_002517024.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
 gi|13422971|gb|AAK23559.1| DNA gyrase subunit A [Caulobacter crescentus CB15]
 gi|220963760|gb|ACL95116.1| DNA gyrase subunit A [Caulobacter crescentus NA1000]
          Length = 919

 Score =  945 bits (2443), Expect = 0.0,   Method: Composition-based stats.
 Identities = 500/914 (54%), Positives = 657/914 (71%), Gaps = 7/914 (0%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++       +     I  ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR+LF 
Sbjct: 1   MSDDHNTIPADGSRGDIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G    + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQGNFGS
Sbjct: 61  MHEQGQTPERPYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD PAA RYTECR+   A  LL DL KDTVDF  NYDG  QEP VL +R PN+LVNG 
Sbjct: 121 VDGDMPAAMRYTECRMAPPAMALLADLDKDTVDFADNYDGKEQEPTVLPSRIPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+D C+ +ID PD+  D L++++ GPDFPTG  I+GR G + 
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACLLLIDQPDVTTDQLLDLVPGPDFPTGGEIIGRAGPRQ 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A  TGRGS+++RGV+ +E+    RE I+VTEIPYQVNKA ++E IAELVR+K+I  +AD+
Sbjct: 241 ALLTGRGSVIMRGVASVEELRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKIEGVADI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+R G R+V+ELKR AS +VILNQLYR+T+LQS F VNM+ALN  +PE+  L  +++
Sbjct: 301 RDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPEQMGLHQLIQ 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR  L+ 
Sbjct: 361 LFVDFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVA 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +SW A D+  L++LI D        G + L++ Q RAIL L L+RLTGLGRD+I NE  +
Sbjct: 421 KSWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGNEAAA 480

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I+  L++LS R+ ++ ++++EL+ V+++   PRR +IV+G  DMEDED IVREDMV
Sbjct: 481 LADAIRGYLELLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADMEDEDLIVREDMV 540

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TV+  GYVKR PL+ YR Q RGGKG+SG+  ++ED VT +F  STH  +LFF+S G VY
Sbjct: 541 ITVTMGGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVY 600

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K KVWRLP+G   +RGKA +N+L +  GE IT+I+  PEDE++W  L V+FAT+ G+VRR
Sbjct: 601 KMKVWRLPLGVANSRGKAFVNLLPIEPGETITSILALPEDEATWGGLDVMFATRSGSVRR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           NKLSDF+ + R+GKIAMKLD  D I+ V  C  + D+LLTT  G+C+RF +  +RVFA R
Sbjct: 661 NKLSDFVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASR 720

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----SL 775
           +S GVRG+ L  GDQVISMA++   DA   ER  Y+KH  A  R   G+  E T      
Sbjct: 721 DSTGVRGVKLLDGDQVISMAVLRSVDATPAERAAYLKHQRAMLRAADGEEGEDTATAADD 780

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            ++   E +++ ER  EL   E+ +LTVS +GFGKRTS+YDFR + R G+G+ A D+SK 
Sbjct: 781 GDEEVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDFRRTGRGGQGLAAQDLSKR 840

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G LV  FP++++DQI+LV+D+G LIRVPV++IR+A+R T+GV IF TA+DE VVSVE
Sbjct: 841 --GGRLVGSFPIDESDQILLVTDQGQLIRVPVSQIRVAARNTQGVTIFRTAQDEHVVSVE 898

Query: 896 RIRESEIVDEAEST 909
           R+ +S   D     
Sbjct: 899 RLADSGGDDNQGED 912


>gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 884

 Score =  945 bits (2442), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/905 (45%), Positives = 572/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVTPTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847

Query: 906 AESTE 910
               E
Sbjct: 848 ILDGE 852



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/434 (14%), Positives = 136/434 (31%), Gaps = 38/434 (8%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K     H    L      L  +  +I    NPE     + +      +  +     +
Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTIIGELIFILENPERLMEVIREELVAIKEQYNDARRTE 520

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490
            ++ T   +    +++      L  +               R         IKE   I  
Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDR 580

Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542
               ++   +L    +  L        P  +R   G   +        E +   +     
Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640

Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                    +  G VK+  L+ +   R  G     +   DE    DL        V+ FS
Sbjct: 641 EEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG V +    ++      A G   +  ++LN  +R+ +++          +  ++  T+
Sbjct: 699 ALGKVVRFPETQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+ +  + +       +++     T  + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVTPTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V   + D +                +    
Sbjct: 810 SEV-SIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDGEEGGEENAALNT 868

Query: 771 EITSLKNDSSVEGN 784
                      E +
Sbjct: 869 PEEDEPAADEAEDD 882


>gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179]
          Length = 877

 Score =  944 bits (2441), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/905 (46%), Positives = 578/905 (63%), Gaps = 41/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M   G ++NK Y K
Sbjct: 6   KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVD++PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A IDN  I +D LM  I GPDFPT A+I G+ GI+ AY TGRG I IR  
Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAIINGKRGIEEAYKTGRGKIYIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +++LN LY  T LQ  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 VKRDAVGEIVLNNLYALTQLQVTFGINIVALDHGQPKLLNLKELIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ + W   +++ ++  
Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAMLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +              G  +LSE Q +AIL+LRL +LTGL  + I +E  SL   I 
Sbjct: 426 AGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLDVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S +RL+ +I++EL  +K + + PRRT I     D+  ED I  ED+VVT+SH 
Sbjct: 486 ELLHILHSPARLMEVIREELEKIKAQYNDPRRTEITASSGDINLEDLINPEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L + ERIT I+P  E      + ++V AT  G V++  L++F
Sbjct: 606 LPQASRGARGRPIVNLLPLEENERITAILPVKEYA---EDKFIVMATAGGLVKKTALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVR
Sbjct: 663 SRPRANGIIAVNLRDDDELIGVDITEGNNEIMLFSAQGRVVRFDENAVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                           ++        D EE  + + D S++ +I
Sbjct: 722 GIKLA---------------------------LTNDISDEENDNEESGNDETDQSLDLSI 754

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 755 DKVVSLVIPKTNGAILTATQNGYGKRTDLAEYPTKSRNTKGVISIKVSERN--GKVVAAA 812

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +NDQI+L++D GTL+R  V EI +  R T+GV +  T+  E+VVS+ER+ + +  ++
Sbjct: 813 QVEENDQIMLITDAGTLVRTRVAEISLVGRNTQGVRLIRTSDTEQVVSIERVCDDDEEND 872

Query: 906 AESTE 910
             + E
Sbjct: 873 TVAEE 877


>gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
 gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis
           ATCC 43325]
          Length = 901

 Score =  944 bits (2440), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/918 (45%), Positives = 586/918 (63%), Gaps = 42/918 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ +    +   + I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 7   MTDLV---QDNTHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+
Sbjct: 64  HEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSI 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  
Sbjct: 124 DGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A I+N +I +D LM  I GPDFPT A+I GR GI+ A
Sbjct: 184 GIAVGMATNIPPHNLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALINGRKGIEEA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +E      E IVV EIPYQVNKA ++EKIA+LV+EK+I  I+ + 
Sbjct: 244 YKTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAIT 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D SD+ G R+ I++KR A  +V+LN LY  T LQ  F +N+VAL+  +P+   L  +++A
Sbjct: 304 DLSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEA 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT Y L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPETA+REL+ +
Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRQAPNPETAKRELIAQ 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472
            W    + D++      +             DG  YL+EVQ +AIL+LRL +LT LG D+
Sbjct: 424 PWKLGHVADMLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED 
Sbjct: 484 ILDEYQKLLEVIGELLYILRSPERLMEVIREELEQIREQFNDPRRTEITASSGDINLEDL 543

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S    ++EDF+  L + +TH ++L F
Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G +Y  KV++LP  S  +RG+ ++NIL L++ ERIT I+P    E    + +VV AT
Sbjct: 604 SSRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYE---EDKFVVMAT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA
Sbjct: 661 AGGIVKKISLTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSAQGRVVRFSESA 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA                                   + + E+I
Sbjct: 721 VRAM-GRAATGVRGIKLA-------------------------LTNDLSDDESAVEIEDI 754

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +   +D  ++ N+ +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 755 SDDNSDDILDLNVDKVVSLVIPKNQGAILTATQNGYGKRTELVEYPTKSRNTKGVISIKV 814

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V + DQI+L++D GTL+R  VNEI +  R T+GV +  T +DE +V
Sbjct: 815 SERN--GKVVAATQVEETDQIMLITDAGTLVRTRVNEISVVGRNTQGVRLIRTTEDETLV 872

Query: 893 SVERIRESEIVDEAESTE 910
            ++R+ E +   E   +E
Sbjct: 873 GLQRVCEVDEEAEDFDSE 890


>gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025]
          Length = 904

 Score =  944 bits (2439), Expect = 0.0,   Method: Composition-based stats.
 Identities = 472/899 (52%), Positives = 623/899 (69%), Gaps = 7/899 (0%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
              G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y
Sbjct: 4   PHGGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYT
Sbjct: 64  RKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP
Sbjct: 124 EVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R
Sbjct: 184 PHNLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVV
Sbjct: 244 AKVRVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV R
Sbjct: 304 IELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVAR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +P  AR  LM R W A+DI D I
Sbjct: 364 RTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYI 423

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LIDD S+TI  DGT  LSE+Q RAIL+LRL RLT +G  ++ +EL  L  +I++ LDIL
Sbjct: 424 RLIDDPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDIL 483

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            SR R++ II  EL  VK     PRRT I E   D+EDED I REDMVVT++  GY+KR 
Sbjct: 484 GSRERIMAIISDELREVKALFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRT 543

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G  
Sbjct: 544 PLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGR 603

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++NIL +  G  I  +M   E E+ W+ L VVFAT  G+VRRN+LSDF  + R+
Sbjct: 604 TAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVVFATSEGDVRRNRLSDFTNVKRN 663

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAMKL     +++V  C + +D+++ T +G+ +RF  + +RVF+GR+S GVRGI LA+
Sbjct: 664 GKIAMKLPEGVSLVNVSICDENDDVMMVTAMGRAIRFQTTDVRVFSGRDSTGVRGIRLAE 723

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+SM+++ H +AD  ER  Y+K       +      +      ++   G +S  R  
Sbjct: 724 GDRVVSMSVIRHFEADPAERAAYLKQRRLMAGVTEEAESDEDEDAIEA---GQLSPTRYA 780

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   E  ILT++ +G GK +SS+D+ +  R G+G+ +    K    G LVA FP+  +D
Sbjct: 781 EMSAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTS--FEKSMRGGPLVACFPIEMSD 838

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           Q++L +  G  IRVPV +I   SR+  GV +F T  +E VVSV RI   +  D AE  E
Sbjct: 839 QVMLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGGNEEVVSVARIA--DAGDTAEVIE 895


>gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
 gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799]
          Length = 876

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/904 (45%), Positives = 575/904 (63%), Gaps = 67/904 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MDRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDGC+ +IDN    +D L+EII GPDFPTG +I GR GI  AY TGRG I +R  +
Sbjct: 187 LTEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGIINGRKGIFEAYRTGRGKIYVRAKT 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIEL
Sbjct: 247 EVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG   +V+LN LY  T +Q++F +NMVAL   +P+ F L  +L+AF+  R EVV RRT 
Sbjct: 307 KRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQPKIFNLKEMLEAFIRHRREVVTRRTV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+RAH+L GLAIA+AN+D ++ +IR SP P  AR  L+ + W+  ++  +++  
Sbjct: 367 YELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEKA 426

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +             DG  YL+  Q +AIL+LRL +LTGL  + I +E  SL  +I E
Sbjct: 427 GDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL +VK +    R T I     D+  ED I +ED+VVT+SH G
Sbjct: 487 LLHILGSTERLMEVIREELEAVKTQYGDERMTEISAASADISMEDLITQEDVVVTLSHQG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS+G VY  +V++L
Sbjct: 547 YVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGKVYWMRVFQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG+ ++N+L L +GERIT I+P  E      + +++FAT  G V++  L+ + 
Sbjct: 607 PLASRTARGRPIVNLLPLGEGERITAILPVEEYS---ADKFILFATAKGTVKKTALNAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   SG  A+ L   DE++ V      N+++L +  G+ VRF    +R   GR + GVRG
Sbjct: 664 RPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQVRAM-GRTATGVRG 722

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   D+V+S+ +                                              
Sbjct: 723 INLEGSDRVVSLIV---------------------------------------------- 736

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++  ILTV+E GFGKRT   ++   +R+ KG+ +  VS+ N  G +V    
Sbjct: 737 -------PDEDGAILTVTENGFGKRTPQQEYPTKSRATKGVISIKVSERN--GLVVGAVQ 787

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V +ND+I+L++++GTL+R  V+E+    R T+GV +  TA+ E+VV +ERI E E+ +  
Sbjct: 788 VGENDEIMLITNRGTLVRTRVSEVSEVGRNTQGVRLIRTAEGEQVVGLERIDEVEVDESL 847

Query: 907 ESTE 910
              E
Sbjct: 848 LEGE 851



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 99/252 (39%), Gaps = 15/252 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    +  ++  +  G VK+  L+ Y      G     +   D+D +  + I   +  V+
Sbjct: 637 EEYSADKFILFATAKGTVKKTALNAYSRPLSSGIRAINLA--DDDELIGVNITEGNNEVM 694

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G V +    ++      A G   +  ++L   +R+ +++          +  ++ 
Sbjct: 695 LFSDAGKVVRFNEDQVRAMGRTATG---VRGINLEGSDRVVSLI------VPDEDGAILT 745

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
            T++G  +R    ++   +R+ K  + +   +     +      + ++I+L T  G  VR
Sbjct: 746 VTENGFGKRTPQQEYPTKSRATKGVISIKVSERNGLVVGAVQVGENDEIMLITNRGTLVR 805

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S +    GRN+ GVR I  A+G+QV+ +  +   + D       +   +        
Sbjct: 806 TRVSEVSEV-GRNTQGVRLIRTAEGEQVVGLERIDEVEVDESLLEGEIDTEAEGESQPEA 864

Query: 768 DTEEITSLKNDS 779
            + +  +   D 
Sbjct: 865 QSGDTEATGADE 876


>gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
 gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter
           segnis ATCC 33393]
          Length = 885

 Score =  943 bits (2438), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/904 (46%), Positives = 588/904 (65%), Gaps = 39/904 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAE V+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE+A+REL+ R W    + +++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEMLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I 
Sbjct: 426 TGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P+S Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  +RG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++F
Sbjct: 606 LPQASRGSRGRPIVNILPLNENERITAILPVTAYE---EDKFVVMATAGGIVKKIALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GVR
Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGNNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                                   +G+ EE++    + +++ NI
Sbjct: 722 GIKLA-------------------------LTNDLNDDESAGEIEEVSDDNTEETLDLNI 756

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 757 DKVVSLVIPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAAT 814

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI+L++D GTL+R  V+E+ I  R T+GV +  T+++E VVS+ERI + +  + 
Sbjct: 815 QVVDTDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSENEHVVSLERICDVDDEEG 874

Query: 906 AEST 909
            + +
Sbjct: 875 EQES 878


>gi|167646833|ref|YP_001684496.1| DNA gyrase subunit A [Caulobacter sp. K31]
 gi|167349263|gb|ABZ71998.1| DNA gyrase, A subunit [Caulobacter sp. K31]
          Length = 922

 Score =  943 bits (2436), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/922 (54%), Positives = 657/922 (71%), Gaps = 14/922 (1%)

Query: 1   MTEHI-----ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++         +       +T ++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRR
Sbjct: 1   MSDDQNTIPGSPASPASRGDVTPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +LF M + G    + YVK AR+ G+VMGKYHPHG+A+IY  L RM Q +S+ L+LI+GQG
Sbjct: 61  VLFSMHEQGQTPERSYVKSARVVGDVMGKYHPHGDASIYFTLVRMTQSFSMGLVLIDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD PAA RYTECR+   A  LL DL KDTVDF+ NYDG  QEPVVL +R PN+L
Sbjct: 121 NFGSVDGDMPAAMRYTECRMAPPAMSLLADLDKDTVDFQDNYDGKEQEPVVLPSRIPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG GGIAVGMATNIP HNLGE+VD C+ +ID PD+  D L++++ GPDFPTG  I+GR 
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEIVDACLLMIDEPDVTTDRLLDLVPGPDFPTGGEIIGRA 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + A  TGRGS+++RG++ +E+    RE I++T IPYQVNK+ ++E IAE+VR+KRI  
Sbjct: 241 GPRQALLTGRGSVIMRGLATVEEIRTGREAIIITAIPYQVNKSNLVEYIAEMVRDKRIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           ++D+RDES+R G R+V+ELKR AS +VILNQLYR+T+LQS F VNM+ALN  +P +  L 
Sbjct: 301 VSDIRDESNRDGMRIVVELKRDASGEVILNQLYRFTALQSSFGVNMLALNRGRPSQMGLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ++  FV FREEVVVRRTK+ L KARDR HVLVGL IAVAN+DE + IIR S +P  AR 
Sbjct: 361 ELIDIFVKFREEVVVRRTKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+ ++W A D+  L++LI D        G + L++ Q RAIL L L+RLTGLGRD+I N
Sbjct: 421 RLVAKAWPAGDMLPLVELIADPRTVQEDGGLIRLTDEQARAILALTLSRLTGLGRDEIGN 480

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E  SL   IK  LD+LS R+ ++ ++++EL+ V+++   PRR +IV+G  D+EDED IVR
Sbjct: 481 EAASLAEAIKGFLDLLSDRANIMAVVREELVEVREKFAIPRRCQIVDGDADVEDEDLIVR 540

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMV+TV+  GYVKR PL+ YR Q RGGKG+SG+  + ED VT +F  STH  +LFF+S 
Sbjct: 541 EDMVITVTLGGYVKRTPLAAYRTQHRGGKGKSGMATKTEDAVTRVFSASTHAPLLFFTSG 600

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VYK KVWRLP G   +RGKA +N+L +  GE IT+I+  PEDE++W+ L V+FAT+ G
Sbjct: 601 GKVYKMKVWRLPQGVANSRGKAFVNLLPIEPGETITSILTLPEDEATWDGLDVMFATRSG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           +VRRNKLSDF+ + R+GKIAMKLD  D I+ V  C    DILL T  G+C+RF    +RV
Sbjct: 661 SVRRNKLSDFVDVRRNGKIAMKLDEGDGIIGVAVCDSGKDILLNTAAGRCIRFSTDEVRV 720

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           FA R+S GVRG+ LA GD VISM+++ + DA   ER  Y+KH  A  R +  + +E  + 
Sbjct: 721 FASRDSTGVRGVRLAPGDSVISMSVLRNVDATPAERAAYLKHQRAMARAMGEEGDEAPAA 780

Query: 776 KNDSSV---EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             DS     E +++ ER  EL   E+ +LTVS +GFGKRTS+YD+R + R G+G+ A D+
Sbjct: 781 VEDSEEDVGEASLTPERIAELGAAEEILLTVSSEGFGKRTSAYDYRRTGRGGQGLTAQDL 840

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           SK    G LV  FPV+++DQI+LV+D G LIRVPV++IR+A+R T+GV IF TA DE VV
Sbjct: 841 SKR--GGKLVGSFPVDESDQILLVTDAGQLIRVPVSQIRVAARNTQGVTIFRTAADEHVV 898

Query: 893 SVERIRESEIV----DEAESTE 910
           SVER+ E+       DE E+ E
Sbjct: 899 SVERLAETGGDDSTGDENEADE 920


>gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
 gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3]
          Length = 927

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/917 (53%), Positives = 657/917 (71%), Gaps = 11/917 (1%)

Query: 1   MTEHIISSDEEE------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+    +             I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHR
Sbjct: 1   MTDDSYENAATPIVPGGGGSDISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M  + +   + Y KCAR+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+L++GQ
Sbjct: 61  RILYSMHDLNMTPERSYSKCARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGSVDGD PA+ RYTE ++  AA  L+ D+ KDTVDF+PNYD    EPVVL +R PN+
Sbjct: 121 GNFGSVDGDMPASMRYTEAKMAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           LVNG GGIAVGMATNIP HNLGEVVD  +A++D+P++  DAL++I+ GPDFPTG  I+GR
Sbjct: 181 LVNGAGGIAVGMATNIPPHNLGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIMGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           T  +NA   GRGS+++RG + +E+   DRE IVVTE+PYQVNK  ++E+IAE+VREKR+ 
Sbjct: 241 TAPRNALRDGRGSVIVRGRASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+D+RDESDRQG R+VIELKR AS DVILNQL+RYT++QS F VNM+ALN  +PE+  L
Sbjct: 301 GISDVRDESDRQGMRIVIELKRDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F+ FREEVVVRR K+ LNKARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR
Sbjct: 361 RDLLQIFLDFREEVVVRRVKFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L  + W   D+  L++LI D    + +  ++ L++ Q RAIL L L+RLTGLGRDDI 
Sbjct: 421 ERLQAKPWPVGDMMALVELIADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIF 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E N L   I+  L ILS R  +L II+ +L+ VKD+   PRRT I EG  +MEDED I 
Sbjct: 481 GEANGLADTIQGHLTILSDRKNVLAIIRDDLIDVKDKFAVPRRTLIGEGDGEMEDEDLIP 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           REDMVVTV+H GYVKRV L+ YR Q RGGKG+SG+ M+DED +T +F  STHT VLFF++
Sbjct: 541 REDMVVTVTHGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFAT 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  YK K WRLP+G+PQ+RGKA +N+L +  G+ I  ++P PEDE++W +  ++FAT  
Sbjct: 601 NGKAYKLKTWRLPLGNPQSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSS 660

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G+VRRNKLSDF  +NR+GKIAMKL+  D ++ V  CT ++D+LLTT LG+ +RF    +R
Sbjct: 661 GDVRRNKLSDFATVNRAGKIAMKLEGDDRMVGVGLCTADDDVLLTTALGRAIRFKADDVR 720

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE--- 771
           VF GR+S GVRG+ L  GD+VISMAI+   DA  +ER  Y+KH +A R+ ++G   E   
Sbjct: 721 VFKGRDSTGVRGVRLQDGDEVISMAILGRVDATPEERSAYVKHANAMRKALAGAEAEEDV 780

Query: 772 -ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              +   D   +  ++ ER  EL   EQFILTV+E GFGKR+S+Y++R + R G+G+ A 
Sbjct: 781 AAPAEAEDEVADAALTVERIAELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAH 840

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            +        L A FPV + D ++LV+  G +IR  ++++RI  R+++GV IF T KDE+
Sbjct: 841 GLGGRAGT-RLAAAFPVEETDDLLLVTSGGQMIRTRMDQVRIVGRSSQGVTIFRTGKDEK 899

Query: 891 VVSVERIRESEIVDEAE 907
           VVSVER+ ES   DEA+
Sbjct: 900 VVSVERLPESGGSDEAD 916



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
             +++  T+ G  +R+   ++ +            +   +   + +     + +D+LL T
Sbjct: 807 EQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGTRLAAAFPVEETDDLLLVT 866

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GQ +R  +  +R   GR+S GV      K ++V+S+  +  +    +  +   +   A
Sbjct: 867 SGGQMIRTRMDQVR-IVGRSSQGVTIFRTGKDEKVVSVERLPESGGSDEADVASEEGGEA 925

Query: 761 QR 762
           + 
Sbjct: 926 EA 927


>gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
 gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886]
          Length = 875

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/892 (46%), Positives = 570/892 (63%), Gaps = 67/892 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI ++ LM  I GPDFPT A+I GR GI++AY TGRG I +R  
Sbjct: 186 NLTEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMINGRKGIEDAYRTGRGKIYLRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVVTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A A+VILN LY  T LQ+ F +NMVAL+  +P  F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVAEVILNNLYAQTQLQTSFGINMVALDNNQPRLFNLKDMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+DE++ +IR +  P  AR  L  R W+   +  +++ 
Sbjct: 366 IFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLEA 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I 
Sbjct: 426 TGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL +V+D     RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMFILSSPERLMEVIREELEAVRDGFGDERRTEITAASADIDIEDLINQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 546 GYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L Q ERIT I+P  E E   ++ +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNLLPLEQDERITAILPVKEYE---DDKFVFMATSDGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+    +ND++L +K G+ VRF  S +R   GR + GVR
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDITWGDNDVMLFSKSGKVVRFHESQVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +                                             
Sbjct: 722 GIKLAEGDKVVSLIV--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 737 --------PHNEGDVLTVTENGYGKRTELCEYPAKSRATQGVVSIKVSERN--GCVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V+   + +++++ GTL+R  V E+    R T+GV +  T++ ERVV ++RI
Sbjct: 787 QVDTGYEFMMITNGGTLVRTRVAEVSQVGRNTQGVRLIRTSEGERVVGLQRI 838



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 99/249 (39%), Gaps = 15/249 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL+ +   R  G     V +R+ D +  + I      V+ F
Sbjct: 639 YEDDKFVFMATSDGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDITWGDNDVMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G V +    ++      A   A +  + L +G+++ +++         N   V+  T
Sbjct: 697 SKSGKVVRFHESQVRAMGRTA---AGVRGIKLAEGDKVVSLI------VPHNEGDVLTVT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L ++   +R+ +  + +   +     +         + ++ T  G  VR  
Sbjct: 748 ENGYGKRTELCEYPAKSRATQGVVSIKVSERNGCVVGAVQVDTGYEFMMITNGGTLVRTR 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +    GRN+ GVR I  ++G++V+ +  +   + +        +  +     +  + 
Sbjct: 808 VAEV-SQVGRNTQGVRLIRTSEGERVVGLQRIEEPEEELLPSEEGGELATQTVSEVPAED 866

Query: 770 EEITSLKND 778
                  ++
Sbjct: 867 AANDEASDE 875


>gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
 gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa]
          Length = 905

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/891 (51%), Positives = 634/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   NK
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IRG + IE     R+ I++TEIPY VNKA ++EKIA++V+EKRI  I+DLRDES++ G R
Sbjct: 243 IRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE VV
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+   E      N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEE-----FNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  IRI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESIRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 887

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 421/905 (46%), Positives = 584/905 (64%), Gaps = 39/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAE V++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+ R W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADMLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I 
Sbjct: 426 SGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 KLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++F
Sbjct: 606 LPQASRGARGRPIVNILPLNENERITAILPVAAYE---EDKFVVMATAGGIVKKIALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GVR
Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                                   + + E+++    + +++ NI
Sbjct: 722 GIKLA-------------------------LTNDLSDDESAVEIEDVSDDNAEETLDLNI 756

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAAA 814

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +NDQI+L++D GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E +  + 
Sbjct: 815 QVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEES 874

Query: 906 AESTE 910
              TE
Sbjct: 875 ENPTE 879



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 25/252 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  VV  +  G VK++ L+ +   R  G     + +RDED +  + I      ++ F
Sbjct: 639 YEEDKFVVMATAGGIVKKIALTEFSRPRSSG--IIALNLRDEDELIGVDITDGSNEIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------ 635
           SS G V +     +          +    AL N LS ++       +             
Sbjct: 697 SSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLSDDESAVEIEDVSDDNAEETLDLNI 756

Query: 636 --FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690
                     NN  ++ AT++G  +R KL ++   +R+ K  + +       ++++    
Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAAAQV 816

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            + + I+L T  G  VR  +S +    GRN+ GVR I  ++ + V+S+  +   D +  E
Sbjct: 817 EENDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEESE 875

Query: 751 RICYMKHMSAQR 762
                   +++ 
Sbjct: 876 NPTESAVENSEE 887


>gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638]
          Length = 888

 Score =  942 bits (2435), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/905 (45%), Positives = 571/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847

Query: 906 AESTE 910
               E
Sbjct: 848 ILDGE 852



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 65/439 (14%), Positives = 140/439 (31%), Gaps = 38/439 (8%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K     H    L      L  +  +I    NPE     + +      ++ +     +
Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTVIGELIFILENPERLMEVIREELVAIKELYNDARRTE 520

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490
            ++ T   +    +++      L  +               R         IKE   I  
Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDR 580

Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542
               ++   +L    +  L        P  +R   G   +        E +   +     
Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640

Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                    +  G VK+  L+ +   R  G     +   DE    DL        V+ FS
Sbjct: 641 EEGRHIFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG V +    ++      A G   +  ++LN  +R+ +++          +  ++  T+
Sbjct: 699 ALGKVVRFPESQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+ +  + +       +++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V   + D +                +    
Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEILDGESLDGEEGSEEKTALNT 868

Query: 771 EITSLKNDSSVEGNISEER 789
                  D + +G+  +  
Sbjct: 869 PEDEDAADEAKDGDDEDNN 887


>gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CFBP2957]
          Length = 885

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L  G QVI+M +     A   E+                      
Sbjct: 719 RPM-GRQARGVRGMNLEDGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852

Query: 894 VERIRESEIVDEAEST 909
           ++R+ ES+   E  + 
Sbjct: 853 LQRVVESDAEGEDAAD 868



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 13/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
           S  G   +     +     QARG   +N   L  G+++  ++  P + +          V
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEDGQQVIAMLVAPAETAGEGEQAVAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++          +    
Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGATESDGEAPSA 880

Query: 766 SGDT 769
               
Sbjct: 881 DTTE 884


>gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 907

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/901 (52%), Positives = 626/901 (69%), Gaps = 9/901 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VSI +EM+ +YL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K
Sbjct: 6   SGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G+ MGKYHPHG+ AIYDAL RMAQ +S+ L L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+I+NPDI  + LMEII GPDFPTG VILGR+G + AY  GRGS+++R  
Sbjct: 186 NLGEVVDATLAMIENPDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+   DR  IV+ EIPYQVNKA M+EKIA++VREK+I  IA ++DESDR G RVVIE
Sbjct: 246 ARVEEIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT
Sbjct: 306 LKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFLSHFLTFREDVVARRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+R+H+L GLA+AV+N+DEVV  IR   +P  AR  LM R   ++DI D I L
Sbjct: 366 AYELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRL 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           IDD S+TI  DGT  LSE+Q RAIL+LRL+ LT +G  ++ +EL  L  +I++ LDIL S
Sbjct: 426 IDDPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGS 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ II  EL  VKD    PRRT I E   D+EDED I REDMVVT++  GY+KR PL
Sbjct: 486 RERIMAIISDELREVKDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + +R+QRRGGKG + +  +++D VT LF+ +THT +LFF++ G VY  K WRLP+G   A
Sbjct: 546 AEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPLGGRTA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++NIL +  G  I  +M     E  W+ L VVFAT  G+VRRN+LSDF  + R+GK
Sbjct: 606 KGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTNVKRNGK 665

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL     +++V  C +++D+++ T LG+ +RF  + +RVF+GR+S GVRGI LA GD
Sbjct: 666 IAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRFSTTDVRVFSGRDSTGVRGIRLASGD 725

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SM+++ H +AD  ER  Y+K     R +     E     + D+   G +S  R  E+
Sbjct: 726 RVVSMSVIRHFEADPAERAAYLKQR---RLMAGVTQEAEADEEEDAVEAGQLSPTRYAEM 782

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  ILT++ +G GK +SS+D+ +  R G+G+ A    K    G LVA FPV  +DQ+
Sbjct: 783 SAAEDLILTITARGLGKISSSHDYPVRGRGGQGVTA--FEKSMRGGQLVASFPVEMSDQV 840

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----SEIVDEAEST 909
           +L +  G  IRVPV +I   SR+  GV +F T   E VVSV RI +    ++ V++AE  
Sbjct: 841 MLATSGGQSIRVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGETADGVEDAEPG 900

Query: 910 E 910
           E
Sbjct: 901 E 901


>gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
 gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum PSI07]
          Length = 885

 Score =  942 bits (2434), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/916 (41%), Positives = 566/916 (61%), Gaps = 65/916 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKR+  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLSRAESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMEQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +G QVI+M +     A   E+                      
Sbjct: 719 RPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852

Query: 894 VERIRESEIVDEAEST 909
           ++R+ ES+   E  + 
Sbjct: 853 LQRVVESDAEGEDAAD 868



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 13/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
           S  G   +     +     QARG   +N   L +G+++  ++  P + +          V
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++               
Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADSGAESDGDAPGA 880

Query: 766 SGDT 769
               
Sbjct: 881 DTAE 884


>gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000]
 gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein
           [Ralstonia solanacearum GMI1000]
          Length = 885

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM R+W++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +   G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +G QVI+M +     A   E+                      
Sbjct: 719 RPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852

Query: 894 VERIRESEIVDEAEST 909
           ++R+ ES+   E  + 
Sbjct: 853 LQRVVESDAEGEDAAD 868



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   D DF+    I      V+ F
Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--DGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
           S  G   +     +     QARG   +N   L +G+++  ++  P + +          V
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++          +    
Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGPESDGEAPDA 880

Query: 766 SGDT 769
               
Sbjct: 881 DTAE 884


>gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264]
 gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264]
          Length = 933

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/908 (53%), Positives = 646/908 (71%), Gaps = 6/908 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                    I  +SI DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + + 
Sbjct: 22  PLPPSSGGDIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMT 81

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             + Y KCAR+ G+V+G++HPHG+A++Y AL RMAQ +S+ L+LI+GQGNFGSVDGD PA
Sbjct: 82  PERSYSKCARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPA 141

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           + RYTE R+  AA  LL D+ KDTVDF+PNYD    EPVVL AR PN+LVNG GGIAVGM
Sbjct: 142 SMRYTEARMAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGM 201

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGE+VD C+A++D+P++  DAL++I+ GPDFPTG  ILGRT  +NA   GRG
Sbjct: 202 ATNIPPHNLGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEILGRTAPRNALRDGRG 261

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+V+RGV+ +E    DRE IVVTE+P+QVNK  ++E+IAE+VREKR+  I+D+RDESDR 
Sbjct: 262 SVVVRGVASVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRA 321

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR AS DVILNQL+RYT++QS F VNM+ALN  +PE+  L  +L+ F+ FRE
Sbjct: 322 GMRIVIELKRDASGDVILNQLWRYTAMQSSFGVNMLALNHGRPEQMGLRKLLEVFLDFRE 381

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVVVRR K+ L KARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  ++W   D
Sbjct: 382 EVVVRRVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGD 441

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  L++LI D    +    ++ L++ Q RAIL L L+RLTGLGRDDI  E   L   I+ 
Sbjct: 442 MIALVELIADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQG 501

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L ILS R  +L II+++LL V+++   PRRT I EG  ++EDED I REDMVVTV+H G
Sbjct: 502 HLTILSDRKNILAIIREDLLDVRNQFAVPRRTLIGEGDFELEDEDLIPREDMVVTVTHGG 561

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKRV L+ YR Q RGGKG+SG+ M+DED +T +F  STHT VLFF++ G  YK KVWRL
Sbjct: 562 YVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKVWRL 621

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+G+P +RGKA +N+L +  G+ I  ++P PEDE++W +  ++FAT+ G+VRRNKLSDF 
Sbjct: 622 PLGAPTSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLSDFA 681

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +NR+GKIAMKL+  D ++ V  CT E+D+LLTT  G+ +RF    +RVF GR+S GVRG
Sbjct: 682 TVNRAGKIAMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDVRVFKGRDSTGVRG 741

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS-----V 781
           + L   D VISMA++   DA  DER  Y+KH +A R+      +E T ++ D        
Sbjct: 742 VRLQGDDAVISMAVLGRVDATPDERAAYVKHANAMRKATGESDDETTGVEADDEGAEEGG 801

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  IS ER   L   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +        L
Sbjct: 802 DAPISPERIAALGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGK-RL 860

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            A FPV ++D ++LV+  G +IR  V ++RI  R+++GV IF TA+ ERVVSVER+ E+ 
Sbjct: 861 AAAFPVEESDDLLLVTSSGQMIRTRVGQVRIVGRSSQGVTIFRTAEGERVVSVERLAETG 920

Query: 902 IVDEAEST 909
             DE E  
Sbjct: 921 GGDEPEVE 928


>gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str.
           Pm70]
 gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 899

 Score =  941 bits (2433), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/919 (44%), Positives = 591/919 (64%), Gaps = 43/919 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ +    +   + I+ +SI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 7   MTDLV---QDTMHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGS+
Sbjct: 64  HEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSI 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  
Sbjct: 124 DGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A I+N +I +D LM  I GPDFPT A+I GR GI+ A
Sbjct: 184 GIAVGMATNIPPHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALINGRKGIEEA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +E      E IVV EIPYQVNKA ++EKIA+LV+EK++  I+ + 
Sbjct: 244 YKTGRGKIYVRAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAIT 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D SD+ G R+ I++KR A  +V+LN LY  T LQ  F +N+VAL+  +P+   L  +++A
Sbjct: 304 DLSDKDGMRIEIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQPKLLNLKQLIEA 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT Y L KAR+RAH+L GLAIA+AN+D ++ +IR +PNPE+A+R L+ +
Sbjct: 364 FVLHRREVVTRRTVYELRKARERAHILEGLAIALANVDPIIELIRNAPNPESAKRALLAQ 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +W    +  ++      +             DG  YL+EVQ +AIL+LRL +LT LG D+
Sbjct: 424 AWELGHVSQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDE 483

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED 
Sbjct: 484 ILDEYKKLLDVIGELLHILRSPERLMEVIREELEQIREQFNDPRRTEITASSADINLEDL 543

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S    ++EDF+  L + +TH ++L F
Sbjct: 544 IAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCF 603

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G +Y  KV++LP  S  ARG+ ++NIL L++ ERIT I+P    E    + +VV AT
Sbjct: 604 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYE---EDKFVVMAT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   +G IA+ L   DE++ V+    +N+I+L +  G+ VRF  +A
Sbjct: 661 AGGIVKKIALTEFSRPRSTGIIALNLRDEDELIGVDITDGQNEIMLFSAQGRVVRFSENA 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA                                   + D EEI
Sbjct: 721 VRAM-GRAATGVRGIKLA-------------------------LTNDLSDDESAVDMEEI 754

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +    + +++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  V
Sbjct: 755 SDENTNDALDLNIDKVVSLVIPKNEGAILTATQNGYGKRTELAEYPTKSRNTKGVISIKV 814

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G +VA   V ++DQI+L++D GTL+R  VNEI I  R T+GV +  T++ E +V
Sbjct: 815 SERN--GKVVAATQVEESDQIMLITDAGTLVRTRVNEINIIGRNTQGVRLIRTSESETLV 872

Query: 893 SVERIRESEIVD-EAESTE 910
            ++R+ + +  D E++++E
Sbjct: 873 GLQRVCDVDEEDIESDASE 891


>gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
 gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380]
          Length = 888

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/905 (45%), Positives = 570/905 (62%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTIIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELMAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 723 GINLNGDDKVVSLIIPRGDGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTEVTEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVATTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847

Query: 906 AESTE 910
               E
Sbjct: 848 ILDGE 852


>gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola]
 gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola]
          Length = 885

 Score =  941 bits (2432), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGC---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847


>gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700]
          Length = 885

 Score =  941 bits (2431), Expect = 0.0,   Method: Composition-based stats.
 Identities = 420/904 (46%), Positives = 585/904 (64%), Gaps = 39/904 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS Q P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIAE V+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPETA+REL+ R W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADMLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I 
Sbjct: 426 AGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLEAIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 ELLHILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  +RG+ ++NIL L + ERIT I+P    E    + +V+ AT  G V++  L++F
Sbjct: 606 LPQASRGSRGRPIVNILPLGENERITAILPVTAYE---EDKFVIMATAGGVVKKIALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVR
Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSETAVRAM-GRLATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                                   + + E+++    + +++ NI
Sbjct: 722 GIKLA-------------------------LTNDLSDDESAVEIEDVSDDNAEETLDLNI 756

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 757 DKVVSLVVPKNNGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVVAAT 814

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI+L++D GTL+R  V+E+ I  R T+GV +  T++DE VVS+ERI + +  + 
Sbjct: 815 QVIDTDQIMLITDAGTLVRTRVSEVSIIGRNTQGVRLIRTSEDEHVVSLERICDVDDEEG 874

Query: 906 AEST 909
            + +
Sbjct: 875 EQES 878


>gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37]
 gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37]
          Length = 911

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/895 (52%), Positives = 636/895 (71%), Gaps = 11/895 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SI +EM++SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K A+ 
Sbjct: 22  SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMG YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL K
Sbjct: 82  VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A  LL D+ KDTVDF+ NYDG  +EP VL AR+PNVLVNG  GIAVGMAT IP HNLGE
Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A++DNPD+  + LME ++GPDFPTG ++LGR+G + AY  GRGS++IR  + +E
Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLMLGRSGARKAYLEGRGSVIIRAATTVE 261

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV++ IPYQVNKA M+E+IAE  R+K+I  IA ++DESDR G RVV+ELKR 
Sbjct: 262 EIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELKRD 321

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQLYR+T +Q+ F  NM+ALNG KPE+ TL G L AF+ FRE+V+ RRT YLL
Sbjct: 322 ATAEVVLNQLYRFTPMQTSFGCNMLALNGGKPEQLTLRGFLSAFLDFREDVIARRTAYLL 381

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DEVV  IR S +   AR+ LM+R W A DI   I LIDD 
Sbjct: 382 RKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALIDDP 441

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++    DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IK+ L+ILSSR R+
Sbjct: 442 THKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSRERI 501

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII++E+ ++++E   PRRT IV+   DM+DED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 502 MGIIREEMTAIREEFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTAGGYIKRTALADFR 561

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA
Sbjct: 562 AQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKA 621

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 622 IVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMK 681

Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +  DE    ++   C++E+D++L T  G+ +RFP+  +RVF  RNS GVRGI L  GD+
Sbjct: 682 FEGEDENTRLINARICSEEDDVMLVTNSGRAIRFPVPEVRVFNSRNSTGVRGIRLKNGDE 741

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H +A+ DER  Y+K      R +     E      D + +  + +ER  E+ 
Sbjct: 742 VVSMSVIRHFEAESDERASYLKM-----RRLMAGVTEDEGSDEDGNADAPLEQERYAEMS 796

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++ +G GK +SS+D+ +  R G+G+ A + S     G +VA FPV   DQI+
Sbjct: 797 AAENLILTITARGLGKLSSSHDYPVRGRGGQGVTAWEKSMR--GGDIVASFPVEQGDQIM 854

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           L +  G  IRVPV+ I   SR+  GV +F+T  +E VVSV  I +    +E E++
Sbjct: 855 LATSTGQSIRVPVDGISFRSRSAGGVRVFNTGAEETVVSVAWIADQ-ADEEPEAS 908


>gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 882

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LNEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSLTQMQVTFGINMVALHQGQPKLLTLKDCLQAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA++N+D ++ +IR +PNP  A+  L+ R W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D++             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++V+D+    RRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E E      +V  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIINLLPLEANERITAILPVREYE---EGRHVFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAAGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 723 GINLNGEDRVVSLIIPRGEGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTGVAEYPTKSRATQGVISIKVSERN--GNVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  DE
Sbjct: 788 QVDACDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDE 847

Query: 906 AESTE 910
               E
Sbjct: 848 VLDGE 852



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 146/430 (33%), Gaps = 38/430 (8%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIK 428
           + LL++ ++    +  L   + + D ++ +IR            ARR  +  +    +I+
Sbjct: 472 EKLLDEYKELLEQIAALIFILESPDRLMEVIREELIAVRDQFGDARRTEITENTADINIE 531

Query: 429 DLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--- 483
           DLI   D            Y  L++ + +       +       D I   L +   +   
Sbjct: 532 DLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 591

Query: 484 ------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                     + +        G   + ++++       R T I+      E         
Sbjct: 592 CFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEANERITAILPVREYEEGRH------ 645

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G 
Sbjct: 646 -VFMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +    ++      A G   +  ++LN  +R+ +++             ++  T++G  
Sbjct: 703 VVRFPESQVRSMGRTATG---VRGINLNGEDRVVSLI------IPRGEGDILTVTENGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ +  + +   +     +        + I++ T  G  VR  +S + 
Sbjct: 754 KRTGVAEYPTKSRATQGVISIKVSERNGNVVGAVQVDACDQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V   + D +                  +      
Sbjct: 813 SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDEVLDGEEGAAVEGDVADVAEDANDAP 872

Query: 775 LKNDSSVEGN 784
            +++   E  
Sbjct: 873 EQDEEGDENA 882


>gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 925

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/904 (51%), Positives = 626/904 (69%), Gaps = 21/904 (2%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
              +   I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    
Sbjct: 35  PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA 
Sbjct: 95  HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMAT
Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI
Sbjct: 215 NIPPHNLGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVMLGQGGARSAYQNGRGSI 274

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR   +IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G 
Sbjct: 275 IIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGV 334

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+LKR A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV
Sbjct: 335 RVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEV 394

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+ 
Sbjct: 395 ITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVL 454

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I LI ++       G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L
Sbjct: 455 PYIKLI-EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELL 513

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++L +R RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+
Sbjct: 514 EVLRNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYI 573

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL  +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP 
Sbjct: 574 KRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPE 633

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G+PQARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +
Sbjct: 634 GAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNV 693

Query: 669 NRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             +GK A++ +    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRG
Sbjct: 694 PSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRG 753

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD+VIS++ +   +   ++R  Y++  + +                       + 
Sbjct: 754 ITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWK----------------TDPAPAELP 797

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E+ +  +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP
Sbjct: 798 PEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFP 855

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +D DQ++LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI +    +E 
Sbjct: 856 AHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEE 915

Query: 907 ESTE 910
            + E
Sbjct: 916 GTVE 919



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 98/256 (38%), Gaps = 37/256 (14%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G V+R  +  +      GK        D D +  + ++S +  VL  +  G  
Sbjct: 673 VLFATAKGSVRRNSMDAFTNVPSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKA 732

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------------ 646
            +     +     Q+R    +  ++L  G+ + ++      E++  +             
Sbjct: 733 IRFAATDVR--VFQSRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTD 790

Query: 647 -------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                              +++  T +G  +R    ++ + NR G+    +++ +   SV
Sbjct: 791 PAPAELPPEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSV 850

Query: 688 ---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
                    + ++L T   + +R  ++ IR  AGRN+ GV   ++A+G+QV+S A +   
Sbjct: 851 VASFPAHDGDQLMLVTDQAKLIRTTVNDIR-IAGRNTQGVTIFNVAEGEQVVSAARITDD 909

Query: 745 DADYDERICYMKHMSA 760
             D +E     +   A
Sbjct: 910 GDDEEEGTVENQSGEA 925


>gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII]
 gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII]
          Length = 897

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGC---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 143/448 (31%), Gaps = 38/448 (8%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K     H    L      L  +  +I    NP+     + +      +  + +   +
Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTE 520

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490
            ++ T   +    +++      L  +               R         IKE   I  
Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDR 580

Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542
               ++   +L    +  L        P  +R   G   +        E +   +     
Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640

Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                    +  G VK+  L+ +   R  G     +   DE    DL        V+ FS
Sbjct: 641 EEGCHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG V +    ++      A G   +  ++LN  +R+ +++          +  ++  T+
Sbjct: 699 ALGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  ++++   +R+ +  + +       +++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V   + D D                +    
Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESSEGEEGSEENAALNA 868

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798
               + ++ +   + ++         + 
Sbjct: 869 PSDDVADEDTDAEDDTDAEDDTDVEDDN 896


>gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10]
 gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM
           10]
 gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001]
 gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua]
 gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92]
 gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F]
 gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125]
 gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516]
 gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A]
 gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004]
 gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038]
 gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27]
 gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003]
 gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 891

 Score =  940 bits (2430), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGC---HVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847


>gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
 gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969]
          Length = 892

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/900 (45%), Positives = 569/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR   
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847


>gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9]
 gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9]
          Length = 859

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/918 (43%), Positives = 559/918 (60%), Gaps = 73/918 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H+ + +         VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDHLFAKET------IPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WN+ Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGS+
Sbjct: 55  HELSNDWNRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL D+ K+TVDF PNYDGS  EP+VL A+ PN+L+NG  
Sbjct: 115 DGDNAAAMRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD  +A++ N D+ +D L++II  PDFPT  +I G  G++  
Sbjct: 175 GIAVGMATNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIYGLAGVREG 234

Query: 241 YATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y +GRG +VIR  +H+E      R+ +++ E+PYQVNKA +L KI ELVREK I  I+DL
Sbjct: 235 YRSGRGRVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDL 294

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P    L  IL+
Sbjct: 295 RDESDKSGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQPRLLNLKQILE 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R EVV RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P  A+ ELM 
Sbjct: 355 EFLRHRREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMA 414

Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           R W +  +++++  ++                     LSE Q +AILELRL RLTGL +D
Sbjct: 415 RQWRSPLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQD 474

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +   I + LDIL+   R+  II  EL  +K +    RR+ I     D+  ED
Sbjct: 475 KIVAEYRDVMDTIMDLLDILARPERVSQIIADELNQIKTQFGDTRRSEIEPFGGDINLED 534

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GY+K  P++ Y+AQRRGG+G+     +DEDF+ +LF+ +TH  +L 
Sbjct: 535 LITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDFLLC 594

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV+ LP GS Q+RGK ++N+L L +GE+I  I+P        +  YV  A
Sbjct: 595 FSSAGRMYWLKVYELPQGSRQSRGKPIVNLLPLVEGEKINAILPVKGFS---DTEYVFMA 651

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  LS F     +G IA+ LD  D ++     +  ++++L +  G+ VRF  +
Sbjct: 652 TARGTVKKTPLSAFSNRRSAGIIAVDLDEGDYLIGAAVTSGNSEVMLFSDAGKAVRFDEA 711

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GRN+ GVRG+ L    QVI M +                               
Sbjct: 712 DVRPM-GRNARGVRGMELGDAQQVIGMLV------------------------------- 739

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +   +LT +  G+GKRT   D+R S R  +G+ A D
Sbjct: 740 ---------------------SNEETSQVLTATANGYGKRTPIGDYRKSRRGTQGVIAID 778

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + N  GALVAV  V D+D+++L++  G LIR  V+E+R   RA +GV + +    E++
Sbjct: 779 TGERN--GALVAVALVADSDELMLMTTGGVLIRTRVSEVRETGRAAQGVRLINLDAGEQL 836

Query: 892 VSVERIRESEIVDEAEST 909
           VS+E+I ES+  D+ + T
Sbjct: 837 VSLEKIAESDEPDDTDET 854


>gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 925

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/904 (51%), Positives = 626/904 (69%), Gaps = 21/904 (2%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
              +   I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    
Sbjct: 35  PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA 
Sbjct: 95  HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMAT
Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI
Sbjct: 215 NIPPHNLGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSI 274

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR   +IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G 
Sbjct: 275 IIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGV 334

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+LKR A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV
Sbjct: 335 RVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEV 394

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+ 
Sbjct: 395 ITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVL 454

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I LI ++       G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L
Sbjct: 455 PYIKLI-EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELL 513

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++L +R RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+
Sbjct: 514 EVLRNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYI 573

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL  +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP 
Sbjct: 574 KRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPE 633

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G+PQARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +
Sbjct: 634 GAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNV 693

Query: 669 NRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             +GK A++ D    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRG
Sbjct: 694 PSNGKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRG 753

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD+VIS++ +   +   ++R  Y++  + +                       + 
Sbjct: 754 ITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWK----------------TDPAPAELP 797

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E+ +  +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP
Sbjct: 798 PEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFP 855

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +D DQ++LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI +    +E 
Sbjct: 856 AHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEE 915

Query: 907 ESTE 910
            + E
Sbjct: 916 GTVE 919



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 99/256 (38%), Gaps = 37/256 (14%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G V+R  +  +      GK        D+D +  + ++S +  VL  +  G  
Sbjct: 673 VLFATAKGSVRRNSMDAFTNVPSNGKFAIRFDEGDDDRLIGVTLLSENDDVLLATRNGKA 732

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------------ 646
            +     +     Q+R    +  ++L  G+ + ++      E++  +             
Sbjct: 733 IRFAATDVR--VFQSRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTD 790

Query: 647 -------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                              +++  T +G  +R    ++ + NR G+    +++ +   SV
Sbjct: 791 PAPAELPPEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSV 850

Query: 688 ---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
                    + ++L T   + +R  ++ IR  AGRN+ GV   ++A+G+QV+S A +   
Sbjct: 851 VASFPAHDGDQLMLVTDQAKLIRTTVNDIR-IAGRNTQGVTIFNVAEGEQVVSAARITDD 909

Query: 745 DADYDERICYMKHMSA 760
             D +E     +   A
Sbjct: 910 GDDEEEGTVENQSGEA 925


>gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 885

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/900 (45%), Positives = 567/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E  D 
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDDN 847


>gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 894

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/921 (42%), Positives = 553/921 (60%), Gaps = 65/921 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++   WN+ 
Sbjct: 3   QFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K AH +L+D+ K+TVDF PNYDGS +EP VL AR PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRLAKIAHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+VD C+ ++  P+  ++ LMEI+  PDFPT  +I G  G++  Y TGRG +V+
Sbjct: 183 PPHNLNEIVDACLHLLKVPEATIEELMEIVPAPDFPTAGIIYGLEGVREGYRTGRGRVVM 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H E     + + I+V EIPYQVNK  +LE+IAELV EK+I  I+ ++DESD+ G R
Sbjct: 243 RAKCHFEDIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L  F+  R EVV
Sbjct: 303 VVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPRLCNLKQLLDIFLEHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R HVL GLA+A+AN+DE +  I+ SP P  A+  LM ++W++S +++
Sbjct: 363 TRRTVYELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVRE 422

Query: 430 LIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           ++   ++S                Y + +DG   LSE Q + IL++RL RLTGL +D I 
Sbjct: 423 MLARAEESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKII 482

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDE 530
            E   +  +I + LDIL+   R+  I+ +EL +++ E        RR+ I    L++  E
Sbjct: 483 GEYREVMSQIADLLDILARPERVTAILVEELNALRQEFGQAKVGARRSVIERNALELGTE 542

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I   DMVVT+SH GY+K  PL+ YRAQRRGG+G+     +D+D++  LFI +TH  +L
Sbjct: 543 DLITPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWIL 602

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVV 649
            FS  G VY  KVW +P GS  +RGK ++N+  L  GE+IT ++P   E  S   + YV 
Sbjct: 603 CFSDRGRVYWLKVWEVPQGSRNSRGKPIVNMFPLQPGEKITVVLPLTGEFRSFPADHYVF 662

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            +T  G V++  L +F    ++G IA+ LD  D ++        +D++L +  G+ VRF 
Sbjct: 663 MSTALGTVKKTPLDEFSNPRKAGIIAVGLDEGDYLIGAALTDGRHDVMLFSDGGKAVRFD 722

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GRN+ GVRG++L  G  VI+M +    D   D      +             
Sbjct: 723 EDDVRPM-GRNARGVRGMALEPGQNVIAMLVSDRGDEARDVGEDSTRVS----------- 770

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +LT +E GFGKRT   ++    R  KG+ A
Sbjct: 771 ------------------------------VLTATENGFGKRTPIGEYTRHGRGTKGMIA 800

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S+ N  G +VA   V + D+I+L++D+G L+R  V EIR   RAT+GV + +     
Sbjct: 801 IQQSERN--GKVVAATLVRETDEIMLITDRGVLVRTRVAEIREMGRATQGVTLIALDDGA 858

Query: 890 RVVSVERIRESEIVDEAESTE 910
           ++  ++RI E++   +  + +
Sbjct: 859 KLSGLQRIVENDAQTDVAAGD 879



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 100/246 (40%), Gaps = 15/246 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PL  +   R+ G     V + + D++    +      V+ F
Sbjct: 655 FPADHYVFMSTALGTVKKTPLDEFSNPRKAG--IIAVGLDEGDYLIGAALTDGRHDVMLF 712

Query: 593 SSLGFVYKEKVWRLPIGSPQARG------KALINILSLNQGERITTIMPFPEDESSWNNL 646
           S  G   +     +      ARG      +   N++++   +R        ED +  +  
Sbjct: 713 SDGGKAVRFDEDDVRPMGRNARGVRGMALEPGQNVIAMLVSDRGDEARDVGEDSTRVS-- 770

Query: 647 YVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLG 703
            V+ AT++G  +R  + ++ +  R   G IA++      ++++     + ++I+L T  G
Sbjct: 771 -VLTATENGFGKRTPIGEYTRHGRGTKGMIAIQQSERNGKVVAATLVRETDEIMLITDRG 829

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VR  ++ IR   GR + GV  I+L  G ++  +  ++  DA  D          +   
Sbjct: 830 VLVRTRVAEIREM-GRATQGVTLIALDDGAKLSGLQRIVENDAQTDVAAGDDTANDSAGD 888

Query: 764 LISGDT 769
             + + 
Sbjct: 889 AGTENA 894


>gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
 gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A
 gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C]
          Length = 905

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/900 (51%), Positives = 633/900 (70%), Gaps = 15/900 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT++           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M
Sbjct: 1   MTDN-------NSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   N+ Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+
Sbjct: 54  HEAGNHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG G
Sbjct: 114 DGDAAAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSG 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C   +DN DI++  L+E+++GPDFPT  +ILG  GIK+A
Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI IRG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLR
Sbjct: 234 YLTGRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+ IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ A
Sbjct: 294 DESNKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE V+  RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +P  A++ELM R
Sbjct: 354 FVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMAR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW+A +I  L+ L+DD +  +  +G    +E Q +AILE+RL RLT + ++ +  +L +L
Sbjct: 414 SWDALNILPLVKLVDDKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI E L+IL SR RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVV
Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KRVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY 
Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K+++LP+ +PQ +G+ ++NIL L   E IT IMP PE++  W+NL ++FAT  GN+RR+
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF +I  +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R 
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRG+ LA+ D VISM ++    A  +ER  Y+     +R  I+   E      N   
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEE-----FNSEE 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +  +++ E   E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G 
Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGL 825

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V V PV  +D+++L+++ G LIR  +  +RI  R T GV +F     E+VVS   I ES
Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885


>gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+]
          Length = 891

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847


>gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
 gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953]
          Length = 897

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 144/448 (32%), Gaps = 38/448 (8%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K     H    L      L  +  +I    NP+     + +      +  + +   +
Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTE 520

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490
            ++ T   +    +++      L  +               R         IKE   I  
Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDR 580

Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542
               ++   +L    +  L        P  +R   G   +        E +   +     
Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640

Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                    +  G VK+  L+ +   R  G     +   DE    DL        V+ FS
Sbjct: 641 EEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG V +    ++      A G   +  ++LN  +R+ +++          +  ++  T+
Sbjct: 699 ALGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  ++++   +R+ +  + +       +++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V   + D D                +    
Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESSEGEEGSEENAALNA 868

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798
               + ++ +   + ++   +     + 
Sbjct: 869 PSDDVADEDTDAEDDTDAEDETDVEDDN 896


>gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758]
 gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758]
          Length = 897

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAIKEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP   +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/448 (14%), Positives = 143/448 (31%), Gaps = 38/448 (8%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K     H    L      L  +  +I    NP+     + +      +  + +   +
Sbjct: 462 RLQKLTGLEHE-KLLDEYKELLTLIGELIFILENPDRLMEVIREELVAIKEQYNDLRRTE 520

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTG---LGRDDIRNELNSLGIEIKECLDI-- 490
            ++ T   +    +++      L  +               R         IKE   I  
Sbjct: 521 ITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDR 580

Query: 491 ---LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV----- 542
               ++   +L    +  L        P  +R   G   +        E +   +     
Sbjct: 581 LLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREY 640

Query: 543 ---------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                    +  G VK+  L+ +   R  G     +   DE    DL        V+ FS
Sbjct: 641 EEGRHVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG V +    ++      A G   +  ++LN  +R+ +++          +  ++  T+
Sbjct: 699 ALGKVVRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  ++++   +R+ +  + +       +++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVAEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V   + D D                +    
Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDDILDGESSEGEEGSEENAALNA 868

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798
               + ++ +   + ++         + 
Sbjct: 869 PSDDVADEDTDAEDDTDAEDDTDVEDDN 896


>gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
 gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2]
          Length = 907

 Score =  940 bits (2429), Expect = 0.0,   Method: Composition-based stats.
 Identities = 475/912 (52%), Positives = 615/912 (67%), Gaps = 14/912 (1%)

Query: 1   MTEHIISSDEEEEKGITS--------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           MT+H    D E    I          VSI+ EM+ +YL YA++VI+ RAIPDLRDGLKPV
Sbjct: 1   MTDH--PEDTETPSEIPERPVFHGPQVSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPV 58

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+LF M + G   +K Y K AR  G+ MGKYHPHG+A+IYDAL RMAQ +S+ L L++
Sbjct: 59  HRRVLFAMHETGNTSDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLD 118

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP VL AR+P
Sbjct: 119 GQGNFGSMDGDGAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPTVLPARFP 178

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG  GIAVGMAT IP HNLGEV+DG +A+I NPD+  +ALMEII  PDFPTGA IL
Sbjct: 179 NMLVNGAEGIAVGMATRIPPHNLGEVIDGTLALIANPDLSTEALMEIIPAPDFPTGATIL 238

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+G + AY  GRGSI++R  + IE+   DR  I++ EIPYQVNKA M+E IAE VREK+
Sbjct: 239 GRSGARKAYLEGRGSIIVRAKTRIEEIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKK 298

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  IA ++DESDR G RVVIELKR A+ADV+LNQLYR+T +Q  F+ NM+ALNG +PE+ 
Sbjct: 299 IEGIAHVQDESDRIGVRVVIELKRDATADVVLNQLYRFTPMQISFACNMLALNGGRPEQL 358

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L   L  F+ FREEVV RRT + L KAR+R+H+L GLA+AVAN+DEVV  IR S +P  
Sbjct: 359 ALRDFLTHFITFREEVVARRTAFELRKARERSHILCGLAVAVANVDEVVATIRSSADPAE 418

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  LM R W A +I   I LIDD ++ +  DGT  LSE+Q RAIL+LRL RLT +G  +
Sbjct: 419 ARERLMTRRWPAGEIIPFIKLIDDPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKE 478

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +EL  L  +I++ L+IL SR R++ II  EL  ++     PRRT IV+   DMEDED 
Sbjct: 479 ITDELLDLAGKIRDYLEILGSRDRIMAIISTELAEMRALFAVPRRTEIVDWSGDMEDEDL 538

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVT++  GY+KR PL+ +R+Q RGGKG + +  +++D VT LF+ +THT +LFF
Sbjct: 539 IEREDMVVTITSGGYIKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFF 598

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VYK K WRLP+   QA+GKA++NIL + QG  I  +MP    E  W +L +VFAT
Sbjct: 599 TTDGMVYKLKTWRLPLAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFAT 658

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G+VR+N LSDF  + R+GKIAMKL     +++     + +D++L T  G+ +RFP + 
Sbjct: 659 SDGDVRQNDLSDFTNVMRNGKIAMKLPEGVSLVNAAIADENDDVMLVTSGGRAIRFPTTE 718

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IRVF  R S GVRGI L   D+V+SMAI+ H +AD  ER  Y+K        +  +TE  
Sbjct: 719 IRVFKSRGSTGVRGIRLGAEDRVVSMAIIRHFEADPAEREAYLKQRRLMAGAVDDETEAD 778

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                 +   G +S ER  E+   E  ILT++  G GK TSS+D+ +  R G G++A D 
Sbjct: 779 EDEV--AVAAGQLSTERYAEMSAAEDLILTITTSGSGKLTSSHDYPVRGRGGMGVKAMD- 835

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G LVA FPV  +DQI+L +  G  IRVPV +I   SR+  GV +F+T  DE+VV
Sbjct: 836 -GAMRGGPLVASFPVEMSDQIMLATSTGQSIRVPVAQISFRSRSAGGVKVFNTGGDEQVV 894

Query: 893 SVERIRESEIVD 904
           SV R+ E    +
Sbjct: 895 SVARVAEQGDDE 906


>gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 925

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/904 (51%), Positives = 626/904 (69%), Gaps = 21/904 (2%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
              +   I+ VSI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    
Sbjct: 35  PSTDTNDISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPG 94

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K A+I GEVMG +HPHG++AIY ALAR+ QDWS+R+ LI+GQGNFGS+D D PAA 
Sbjct: 95  HPYRKSAKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAM 154

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  AA  LL D+ +DTVDF PNYDGS QEP VL AR+PN+LVNG GGIAVGMAT
Sbjct: 155 RYTEARLSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMAT 214

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+  C A I +P I ++ L+ ++ GPDFPTG V+LG+ G ++AY  GRGSI
Sbjct: 215 NIPPHNLGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVMLGQGGARSAYQNGRGSI 274

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR   +IE+  GDR  IV+TEIPYQ+ K+A++EKIAE  ++KR+  I+D+RDES+R+G 
Sbjct: 275 IIRSRYNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGV 334

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+LKR A+ DV+LNQL+R+T  QS F  NM+ALNG +PE  +L  I+ AFV FREEV
Sbjct: 335 RVVIDLKRDATPDVVLNQLWRHTPAQSSFPANMLALNGGRPETMSLKDIIAAFVQFREEV 394

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+KY L KAR+RAH+L+G+ IAV NLDEVVRIIR +P+P  A  EL  R W  +D+ 
Sbjct: 395 ITRRSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVL 454

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I LI ++       G   LS+ Q  AIL LRL+RLT +GRD I  EL  L I I E L
Sbjct: 455 PYIKLI-EAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELL 513

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           ++L +R RL  I+ +E  +V+ +  TPRRT+IV     +EDED I RE+MVVTV+H GY+
Sbjct: 514 EVLRNRERLYEIMVEEFDAVEAQFATPRRTQIVAASDAIEDEDLIEREEMVVTVTHGGYI 573

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL  +R Q RGGKGRSG+  +DED VT+LF+  THT VLFFS+ G VY+ KVWRLP 
Sbjct: 574 KRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVWRLPE 633

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G+PQARG+ ++N+L L +GE ++T++P PEDE+ W NL+V+FAT  G+VRRN +  F  +
Sbjct: 634 GAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDAFTNV 693

Query: 669 NRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             +GK A++ +    D ++ V   ++ +D+LL T+ G+ +RF  + +RVF  R S GVRG
Sbjct: 694 PSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQSRTSTGVRG 753

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L  GD+VIS++ +   +   ++R  Y++  + +                       + 
Sbjct: 754 ITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWK----------------TDPAPAELP 797

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E+ +  +  E FILTV+  G+GKRTSS+++R SNR G+GI   + S+ N  G++VA FP
Sbjct: 798 PEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERN--GSVVASFP 855

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +D DQ++LV+D+  LIR  VN+IRIA R T+GV IF+ A+ E+VVS  RI +    +E 
Sbjct: 856 AHDGDQLMLVTDQAKLIRTTVNDIRIAGRNTQGVTIFNVAEGEQVVSAARITDDGDDEEE 915

Query: 907 ESTE 910
            + E
Sbjct: 916 GTVE 919



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 99/256 (38%), Gaps = 37/256 (14%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G V+R  +  +      GK        D+D +  + ++S +  VL  +  G  
Sbjct: 673 VLFATAKGSVRRNSMDAFTNVPSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKA 732

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------------ 646
            +     +     Q+R    +  ++L  G+ + ++      E++  +             
Sbjct: 733 IRFAATDVR--VFQSRTSTGVRGITLKDGDEVISLSTLRGFETTVEDRDKYLRSAAWKTD 790

Query: 647 -------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                              +++  T +G  +R    ++ + NR G+    +++ +   SV
Sbjct: 791 PAPAELPPEKIKAFEEAEDFILTVTANGYGKRTSSHEYRRSNRGGQGITNIETSERNGSV 850

Query: 688 ---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
                    + ++L T   + +R  ++ IR  AGRN+ GV   ++A+G+QV+S A +   
Sbjct: 851 VASFPAHDGDQLMLVTDQAKLIRTTVNDIR-IAGRNTQGVTIFNVAEGEQVVSAARITDD 909

Query: 745 DADYDERICYMKHMSA 760
             D +E     +   A
Sbjct: 910 GDDEEEGTVENQSGEA 925


>gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 885

 Score =  939 bits (2428), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/900 (44%), Positives = 566/900 (62%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMV L+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVGLSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E  D 
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDDN 847


>gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
 gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970]
          Length = 892

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 569/905 (62%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR   
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYSDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSALGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847

Query: 906 AESTE 910
               E
Sbjct: 848 ILDGE 852


>gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814]
 gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814]
          Length = 981

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 515/911 (56%), Positives = 675/911 (74%), Gaps = 16/911 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G++ ++I+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G  ++K Y 
Sbjct: 40  EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ ++YDAL RMAQ++S+ L L++GQGNFGS+DGDP AA RYTE
Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+K A+ LL D+ KDTV+F+ NYDGS +EP+VL AR+PN+LVNGGGGIAVGMATNIP 
Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +A+I++P+ID +AL+EI+ GPDFPTGA+I+GR G ++   TGRGS+++R 
Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALIIGRAGSRSGLMTGRGSVIMRS 279

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S IE+    RE +V TEIPYQVNKA+M+EKIAELVR+KRI  IAD+RDESDR G RVV+
Sbjct: 280 KSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVV 339

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR AS +V+LNQL+RYT LQ+ F +NM+ALN  +PE  +L  IL+AF+ FREEVV RR
Sbjct: 340 EVKRDASPEVVLNQLFRYTQLQTSFGMNMLALNSGRPELLSLKAILQAFIIFREEVVARR 399

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKAR RAH+LVGLA+AVAN+DEV++IIR SP+P TAR +LM R+W A D+  LI+
Sbjct: 400 TKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLIN 459

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI D        G + LSE Q RAIL+LRL RLTGLGRD+I +E   L   I + LDILS
Sbjct: 460 LIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDILS 519

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR R++ II +EL  V++E   PRR++ +E  LDM+DE  I +EDMVV  +H GY KR  
Sbjct: 520 SRPRVMEIITEELRVVREEFAIPRRSQFIEAELDMDDEAFIEKEDMVVMFTHGGYAKRTA 579

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS+YR Q RGG+GRSG+  ++ED VT  F+ +THT VLFFSS G VYK KVWR+P+G+PQ
Sbjct: 580 LSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQ 639

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGKAL+N+L L++GE IT++MP PEDE    N+ ++FAT+ G VRRNKLSDF Q+NR+G
Sbjct: 640 SRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFTQVNRNG 699

Query: 673 KIAMKLDS------RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           KIAMKLD        D I+ V+ C+ ++D++LTT LGQC+RF +  +RVF GR S GVRG
Sbjct: 700 KIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRG 759

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI------TSLKNDSS 780
           I LA GD+VISM ++ H D    E   Y+KH SA RR +  +  +           +D  
Sbjct: 760 IRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEG 819

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            E  +S ER  EL   E+F+LT++E G GKR S+YD+R++ R GKG+ A  +   N    
Sbjct: 820 DEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKL---NAGRR 876

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L A FP+ D D+I+LV+D G LIR P  +IRIA RAT+GV +  T+ +ERVVSVER+ E 
Sbjct: 877 LAAAFPIEDGDEIMLVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERLAEQ 936

Query: 901 EIV-DEAESTE 910
           E   DE E+ E
Sbjct: 937 ESDVDENETEE 947



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D V+  + LG   R  +   R     G+  +GV         ++  +     +   S
Sbjct: 724 SPDDDVMLTTALGQCIRFKVEDVRV--FTGRTSTGVRGIRLANGDEVISMLVLRHMDITS 781

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW---NNLYVVF 650
                Y +    +     +  G   I+++S    +          +  +       +++ 
Sbjct: 782 PEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEGDEAALSPERIAELGAAEEFLLT 841

Query: 651 ATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            T+ G  +R    D+    R   G IA KL++   + +       ++I+L T  GQ +R 
Sbjct: 842 ITEDGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRLAAAFPIEDGDEIMLVTDAGQLIRT 901

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P   IR  AGR + GV+ +  +  ++V+S+  +   ++D DE         +   +    
Sbjct: 902 PAKQIR-IAGRATQGVKVLRTSGEERVVSVERLAEQESDVDENETEENVDGSAEIVDVAI 960

Query: 769 TEEITSLKNDSSVEGNISEER 789
                   N  + + +  ++ 
Sbjct: 961 DGAPEGEPNSETNDSSNDQQE 981


>gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34]
 gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus
           metallidurans CH34]
          Length = 897

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/910 (41%), Positives = 558/910 (61%), Gaps = 59/910 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NPD  +D L+E++  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLRNPDATVDELIELVPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L AF++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLDAFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAESDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +   I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMGLIADLLDILARPERITTIITEELGAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L  GE+I  I+P  + +      ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLADGEKINVILPVRQFD---AEHFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L+DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTVLTDFSNPRKAGIIAVDLDEGDFLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +G  VI+M +     A+ +  +                     
Sbjct: 719 RPM-GRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGS----------- 766

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 767 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 800

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  
Sbjct: 801 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 858

Query: 894 VERIRESEIV 903
           ++RI ES+  
Sbjct: 859 LQRIVESDAD 868



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 13/223 (5%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +   +  G VK+  L+ +   R+ G     +   + DF+    +      V+ FS  
Sbjct: 650 EHFIFMATARGTVKKTVLTDFSNPRKAGIIAVDLD--EGDFLIGAAVTDGQHDVMLFSDA 707

Query: 596 GFVYKEKVWRLPIGSPQARGKALIN-------ILSLNQGERITTIMPFPEDESSWNNLYV 648
           G   +     +     QARG   +N       I  L              +        V
Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMNLDEGQAVIAMLVAPAESAETESSVAEGDVSPVGSV 767

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++       +++    + E++I+L T  G  
Sbjct: 768 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVL 827

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
           +R  ++ IR   GR + GV  I++ +G ++  +  ++ +DAD 
Sbjct: 828 IRTRVAEIREM-GRATQGVTLINVDEGTKLSGLQRIVESDADN 869


>gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 849

 Score =  939 bits (2427), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/906 (43%), Positives = 571/906 (63%), Gaps = 67/906 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +++  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN
Sbjct: 2   EQQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA 
Sbjct: 62  RAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K AH LL DL K+TVDF PNYDGS  EP+V  AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HN+ EVVD C+A++ NPD+D++ L+E++  PDFPT   I G  G+K  Y TGRG +
Sbjct: 182 NIPPHNMTEVVDACLALLKNPDMDIEQLIELVPAPDFPTAGFIYGLAGVKEGYRTGRGRV 241

Query: 249 VIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           V+R  +H E    GDR+ I++ E+PYQVNKA +L KI E+VREKRI  ++++RDESD+ G
Sbjct: 242 VMRARTHFEDIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R VIELKRG +ADVILNQLY+ T +Q  F +NMVA+   +P+   L  +++AF+  R E
Sbjct: 302 MRAVIELKRGENADVILNQLYKDTQMQDSFGINMVAIVDGQPKLCNLKDVIEAFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+RELM R W +S +
Sbjct: 362 VVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLV 421

Query: 428 KDLIDLIDD--------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +D++  +D+          + +      +LS+ Q +AILELRL RLTGL +D I  E   
Sbjct: 422 EDMLSRVDEASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYRE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I + LDIL+  +R+  II  EL++++ +    RR+ IV    DM  ED I  ED+V
Sbjct: 482 VMDKITDLLDILAKPARVTQIIGDELITIRSQFGDKRRSEIVTHTQDMSMEDLIAPEDVV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K   L  YRAQ+RGG+G+     +++DF+ +LFI +TH  +L FS+ G VY
Sbjct: 542 VTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSNRGRVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G+  +RGK ++N+L L  GE+I  I+P  +      + ++ FAT  G V++
Sbjct: 602 WLKVYDVPQGTRISRGKPIVNLLPLEAGEKINAILPVKQFA---EDQFIFFATSEGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LSDF    ++G IA+ LD  D ++ V     ++D++L +  G+ VRF    +R   GR
Sbjct: 659 TPLSDFANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDEDDVRGM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++LAKG +VI++ +  + +                                  
Sbjct: 718 TARGVRGMNLAKGGKVIALLVAENEE---------------------------------- 743

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                             Q +LT +E G+GKRT   ++    R  +G+ A   S+ N  G
Sbjct: 744 ------------------QSVLTATENGYGKRTPISEYTRHGRGTQGMIAIQTSERN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V   D+I+L+   G LIR  VNEIR   RAT+GV + +  + E++  + RI E
Sbjct: 784 KVVAATLVKPEDEIMLIGTSGVLIRTRVNEIREMGRATQGVTLMNVGEGEKLAGLSRIAE 843

Query: 900 SEIVDE 905
           +E   E
Sbjct: 844 TEEESE 849


>gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
 gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1]
          Length = 881

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/921 (42%), Positives = 572/921 (62%), Gaps = 76/921 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +M   WN+
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VKCAR+ GEVMGKYHPHG+A+IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA R
Sbjct: 62  PFVKCARVVGEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K ++ LL D+ K+TVDF PNYDG  +EP VL  R PN+LVNG  GIAVGMATN
Sbjct: 122 YTECRLDKISNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV++G + ++ N    +D L+E++  PDFPTG +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNITEVINGALHLLANEQCTIDELIELVPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK A+LE+IAELVR+K++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEEYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQLLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++S ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    +++               Y I SDG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAGEANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
            NE   +  +I + LDIL+  +R+  II  EL + K++        RR+ I     D+  
Sbjct: 482 VNEYKDVMAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRSTIEHNATDLAT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P+S YRAQ+RGG+G+  +  +D+D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P    + S  ++ YV
Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGANRSFPDDRYV 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMATSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +  QVI++ +  +                         
Sbjct: 722 DENDVRPM-GRTARGVRGMNLEETQQVIALLVAEN------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      ++Q +LT +E GFGKRT   ++    R  KG+ 
Sbjct: 756 ---------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V+  D+I+L++  G LIR  V+EIR   RAT+GV + +    
Sbjct: 789 AIQTSERN--GKVVAATLVDSTDEIMLITTGGVLIRTRVSEIREMGRATQGVTLIAVEDG 846

Query: 889 ERVVSVERIRESEIVDEAEST 909
            ++  ++R+ ES++ D  E  
Sbjct: 847 TKLSGLQRVVESDVEDAVEGD 867



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 97/237 (40%), Gaps = 14/237 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PLS +   R+ G     +   + DF+    +      V+ F
Sbjct: 655 FPDDRYVFMATSLGTVKKTPLSDFSNPRKAGIIAVDLD--EGDFLIGAALTDGQHDVMLF 712

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +N   L + +++  ++             V+ AT
Sbjct: 713 SDGGKAVRFDENDVRPMGRTARGVRGMN---LEETQQVIALLVAEN-----EQQSVLTAT 764

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++       ++I+L T  G  +R  
Sbjct: 765 ENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDSTDEIMLITTGGVLIRTR 824

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +S IR   GR + GV  I++  G ++  +  V+ +D +        +   ++     
Sbjct: 825 VSEIREM-GRATQGVTLIAVEDGTKLSGLQRVVESDVEDAVEGDNAEGAGSEAPAAG 880


>gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
 gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1]
          Length = 873

 Score =  939 bits (2426), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/922 (42%), Positives = 556/922 (60%), Gaps = 76/922 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L DL K TVDF PNYDGS +EP+V+  R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E VD C+ ++ NP+  +D LMEII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNETVDACLHLLKNPEASIDELMEIIPAPDFPTAGIIYGLNGVREGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I+V EIPYQVNK  +LE++AELV EK++  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKQTQLQDSFGINMVALVDGQPKLCNLRDLVEVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ SP P  A++ LM +SW++S ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIEIIKNSPTPPLAKQGLMDKSWDSSLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++      +               Y + +DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLVRAASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMED 529
             E   +   I + LDILS   R+  II +EL++VK E        RR+ I   + ++  
Sbjct: 482 IGEYKEVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQTKLGARRSVIEHNVQELGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GYVK  PL+ YRAQRRGG+G+     +D+D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWM 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G VY  KVW +P G   ARGK ++N+  L   E+IT ++P   E  +  ++ Y+
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GRN+ GVRG++L  G  VI+M +                            
Sbjct: 722 DEDDVRPM-GRNARGVRGMALEPGQNVIAMLVAED------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      + Q +LT +E G+GKRTS  ++    R  KG+ 
Sbjct: 756 ---------------------------ESQSVLTATENGYGKRTSITEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   ++ N  G +VA   V   D+I+L++D+G L+R  V+EIR   RAT+GV + S    
Sbjct: 789 AIQQTERN--GRVVAATLVRPEDEIMLITDRGVLVRTRVSEIRELGRATQGVTLISLDDG 846

Query: 889 ERVVSVERIRESEIVDEAESTE 910
            ++  ++RI E++   +A  TE
Sbjct: 847 SQLGGLQRIVENDAGSDAGDTE 868


>gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
 gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel]
          Length = 894

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/896 (50%), Positives = 636/896 (70%), Gaps = 8/896 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y 
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP 
Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG
Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ I
Sbjct: 246 RAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  R
Sbjct: 306 ELKKDVEAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLLNKARD+AH+L+GL IAV+N+DE++RII+ S +P TA++E+M R WNA +I  L+ 
Sbjct: 366 TVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLVK 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+DD +  +   G    +EVQ +A+LE+RL RLT + ++ +  +L +L  EI E L+IL 
Sbjct: 426 LVDDKAM-LNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILG 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVP
Sbjct: 485 SRERLLKILKEELIKVKEEFATPRLTSIEFGEFDKDIEDLIQREEMVVTVTLGGYIKRVP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ
Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQ 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  +G
Sbjct: 605 GKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNG 664

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LA  
Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAGD 724

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM ++    +  ++R  Y+     QR  I+          N   +  +++ +   E
Sbjct: 725 DSVISMTVLKGISSTKEDRDAYLSVSWEQRLEIAKGKS-----FNPEELGVSLTLDSILE 779

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I ++   +E   
Sbjct: 838 LMLITNNGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIADTSASEEDNE 893


>gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I]
          Length = 901

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/882 (53%), Positives = 620/882 (70%), Gaps = 8/882 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 16  VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 76  GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+I++PD+  + L+E I GPDFPTGA++LGR+G + AY  GRGS++IR  + +E+
Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGALMLGRSGARKAYLEGRGSVIIRAKTRVEE 255

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IVV EIPYQVNKAAM+EKIAE VREK+I  +A ++DESDR G RVV+ELKR A
Sbjct: 256 IRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELKRDA 315

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +V+LNQLYR+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT +LL 
Sbjct: 316 TPEVVLNQLYRFTPMQTYFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAHLLR 375

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV N+DE+V  IR S +   AR +LM R W A  I + I LIDD +
Sbjct: 376 KARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALIDDPT 435

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +T   DGT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IK+ L+ILSSR R++
Sbjct: 436 HTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRERIM 495

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           GII  EL  V+D    PRRT IV+   DMEDED I REDMVVTV+  G++KR PL+ +RA
Sbjct: 496 GIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGWIKRTPLADFRA 555

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  ++ED VT LF+ +THT +LFF++ G VYK K WRLP      +GKA+
Sbjct: 556 QKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 615

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN+LSDF  + R+GKIAMKL
Sbjct: 616 VNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTNVRRNGKIAMKL 675

Query: 679 DSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                 ++++V  C++++D++L T  G+ +RF  + +RVF  R S GVRGI L   D V+
Sbjct: 676 PEDGSVKLVNVRICSEDDDVMLFTNSGRAIRFRSTDVRVFNSRESTGVRGIRLTGEDSVV 735

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM+++ H+    ++R  Y+K     RR ++G T++  +   D+  + N S E   E+   
Sbjct: 736 SMSVIRHSKYTPEQRTAYLK----MRRAMAGLTDDAEASDEDAPEDPNFSTELYAEMSAA 791

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L 
Sbjct: 792 ENLILTITAGGSGKLSSSHDYPVRGRGGMGVTAMD--KAMRGGEIVASFPVELDDQIMLA 849

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + KG  IRVPV+ I   SR+  GV +F+T K E VVSV  I 
Sbjct: 850 TSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEEVVSVAWIA 891


>gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
 gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043]
          Length = 907

 Score =  938 bits (2425), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/912 (45%), Positives = 579/912 (63%), Gaps = 49/912 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   EIAREILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++S+R +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH LL DL KDTVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMSRLAHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E++DGC+A+ID+  + +D LM  I GPDFPTG +I GR GI  AY TGRG I +
Sbjct: 183 PPHNMREIIDGCLALIDDYTLSIDDLMAYIPGPDFPTGGIINGRAGILEAYRTGRGRIYV 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE      R+ I+VTE+PYQVNKA ++EKIAELV++KRI  IA+LRDESD++G R
Sbjct: 243 RARHTIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+KRG S DV++N L+ +T LQ++F +NMVAL+  +P+   L  IL+AFV  R EVV
Sbjct: 303 VVIEVKRGESGDVVVNNLFAHTQLQTVFGINMVALDNGQPKILNLKEILEAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDR H+L GLA+A++N+DEV+ +I+ SP+   A+ +L+ R+W    + D
Sbjct: 363 TRRTLFELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTD 422

Query: 430 LIDLIDDSSYTIGS----------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +++    +S                    LS  Q +AILELRL RLTGL  + + +E  S
Sbjct: 423 MLERAGATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLS 482

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I E  +IL+S  RLL +I++EL +++D+    R+T I    LD+  ED I  EDMV
Sbjct: 483 ILKRIAELNEILASPERLLDVIREELQAIRDQYGDERKTEIQASHLDLTIEDLINEEDMV 542

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S  GY K  PLS Y+AQRRGG+G+S   M+DED +  L + STH +VL FS+ G VY
Sbjct: 543 VTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRGKVY 602

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P  S  +RGK LIN+L L++GE I  I+P  E      + Y+ FAT  G V+R
Sbjct: 603 WLKVYEMPNASRGSRGKPLINLLPLDEGEAINAILPVREYR---EDSYIFFATAKGTVKR 659

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F +    G IA+ L+  D ++     +  +  +L +  G+ +RF    +R   GR
Sbjct: 660 TSLEQFSRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIRFEEGNVRAM-GR 718

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ L  G +VIS+ I                                 SL  D+
Sbjct: 719 TARGVRGMRLQGGAEVISLII-------------------------------PQSLTIDA 747

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  E   + +   + +ILT SE G+GKRT   +F +  R G+G+ A   S+ N  G
Sbjct: 748 ETDDDAEERPVETVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRN--G 805

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ALVA   V D+D+++L++DKGTL+R  V E+ ++SR T+GV +  T + E +V+  R+ E
Sbjct: 806 ALVAAIQVRDSDEMMLITDKGTLVRTRVGEVSVSSRNTQGVTLIRTGEGEHLVATVRVDE 865

Query: 900 SE-IVDEAESTE 910
            + + D+A   E
Sbjct: 866 PDAVEDDALDAE 877



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 95/269 (35%), Gaps = 19/269 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VKR  L  +   R  G     + + ++D +    I S +   +  
Sbjct: 642 YREDSYIFFATAKGTVKRTSLEQFSRPRSVG--LIAIDLEEDDRLVGAAITSGNDHAMLL 699

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------ 646
           SS G   + +   +      ARG   + +    +   +        D  + ++       
Sbjct: 700 SSNGKAIRFEEGNVRAMGRTARGVRGMRLQGGAEVISLIIPQSLTIDAETDDDAEERPVE 759

Query: 647 -------YVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETC-TQENDI 696
                  Y++ A+++G  +R +L +F        G IAM+   R+  L         +++
Sbjct: 760 TVGEDQVYILTASENGYGKRTRLDEFPLRGRGGQGVIAMQTSQRNGALVAAIQVRDSDEM 819

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L T  G  VR  +  +   + RN+ GV  I   +G+ +++   V   DA  D+ +    
Sbjct: 820 MLITDKGTLVRTRVGEV-SVSSRNTQGVTLIRTGEGEHLVATVRVDEPDAVEDDALDAEA 878

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             S +    +  T              + 
Sbjct: 879 LDSEEGAATAEATPTPDDGAPSDEAPQDD 907


>gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
 gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5]
          Length = 905

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/891 (51%), Positives = 634/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFTKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+        + N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----VFNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
 gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Paris]
          Length = 863

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/906 (45%), Positives = 570/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K++  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               ++             +    LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  + +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRFDENKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V                                           
Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 741 -----------NGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13]
 gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13]
          Length = 855

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/909 (44%), Positives = 565/909 (62%), Gaps = 67/909 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   +N+
Sbjct: 2   NQFAKETLPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A YD + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H LL D+ KDTVDF PNYDGS  EP+++  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKISHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++ CV ++DNP+I +D L+  I GPDFPT  +I G +GIK  Y TGRG +V
Sbjct: 182 IPPHNLTEVINACVEILDNPNISIDELLNFIPGPDFPTAGIIHGNSGIKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+T    RE I++ E+PYQVNK  +LEKIAELV +K++  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P+   L  +L AF+  R EV
Sbjct: 302 RVVIELKRGEIPDVVLNNLYKQTQLQDSFGINMVALIDGQPKLLNLKQVLDAFLNHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+R H+L GLA+A+ N+DE+++II+ SP+P  A+ ELMQR W +S + 
Sbjct: 362 ITRRTVFELRKARERGHILEGLAVALENVDEMIKIIKSSPSPVEAKTELMQREWKSSVVS 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            ++   D + Y            +    LS++Q + IL++RL RLTGL +D I NE   +
Sbjct: 422 SMLKQGDATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEI 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + +DIL+   R+  IIK EL  +K+     RR+ IVE   D+  ED I  +DMVV
Sbjct: 482 MDVIADLIDILNKPDRVTSIIKTELEEIKETYGDDRRSEIVENAEDLSIEDLIAPQDMVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K   L  YRAQ+RGG+G+     +D+DF+  +F+ ++H ++L FSS G VY 
Sbjct: 542 TLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L  GE+I  I+   E     +N Y+  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRVSRGKPIVNLFPLMPGEKINAILTVKEFV---DNEYIFMATAKGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF    +SG IA+KLD+ D ++       ENDI+L +  G+ V F  S +R   GRN
Sbjct: 659 PLSDFSNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFGESDVRSM-GRN 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  G +V+S+ I  +                                     
Sbjct: 718 ARGVRGMKLTDGGEVLSLLIAEN------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          + Q ++  +E G+GKRT   +FR S R  +G++A  VS  N  G 
Sbjct: 741 ---------------EAQSVMVATENGYGKRTLLSEFRRSGRGTQGVKAIQVSDRN--GQ 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V D+D+++L++  G LIR  V+EIR   RAT+GV + + + DE++  +E++ ES
Sbjct: 784 VVGAKLVGDHDELMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDDEKLRGLEKVAES 843

Query: 901 EIVDEAEST 909
           E  DE +  
Sbjct: 844 EHHDEEDGD 852


>gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
 gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A
 gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2]
          Length = 906

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 458/891 (51%), Positives = 637/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DQNFSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+    +V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S NP  A++ELM RSW+A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKAM-LNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I 
Sbjct: 602 NPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     +R  I+   E      N   +   ++ + 
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEE-----FNLEELGVTLTADS 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 ILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 126/352 (35%), Gaps = 18/352 (5%)

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ++  + +  S    ++   +           + LS  Q +      +  +  L  ++  
Sbjct: 566 EDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGK---GRPMVNILPLKENEHI 622

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
             +  L     E  ++    +   G I++  L    ++ +  +  I     D   +    
Sbjct: 623 TNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPC 682

Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           +ED  + + +  G   R P+   R           +  R  D V  + +    + +    
Sbjct: 683 KEDEHILLATKAGKALRFPVESLR----------VIKSRTSDGVRGMKLAKEDSVISMTV 732

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G    ++     +  P  +   +      N  E   T+      E + +  +++  T+
Sbjct: 733 LKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLEELGVTLTADSILEMANSEEFILTVTE 792

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R+    +   +R G   + +D  D+    + V     +++++L T  G+ +R  +
Sbjct: 793 NGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRCKL 852

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            ++R   GRN+ GV    L  G++V+S++++       ++         A+ 
Sbjct: 853 ESVR-ITGRNTSGVILFKLDDGEKVVSVSLIAETSESEEDSELEEDLEQAEE 903


>gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703]
 gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703]
          Length = 878

 Score =  938 bits (2424), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/903 (44%), Positives = 572/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+ N+D ++ +IR +  P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +I++EL ++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALLFILRSPERLMEVIREELEAIKEQYNDQRRTEITHNSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E     L V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEQNERITAILPVREYE---EGLNVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ +                                             
Sbjct: 723 GINLQDDDRVVSLIVPRGEGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV+E G+GKRT+  D+   +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTENGYGKRTAINDYPTKSRATKGVISIKVSERN--GNVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA++ERVV ++R+ E    DE
Sbjct: 788 QVDTTDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            + 
Sbjct: 848 LDG 850



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      A G   IN+   ++                     ++  T++G  
Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGEGDILTVTENGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++D+   +R+ K  + +   +     +        + I++ T  G  VR  +S + 
Sbjct: 754 KRTAINDYPTKSRATKGVISIKVSERNGNVVGAVQVDTTDQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ ++V+ +  V     D +               +  + +    
Sbjct: 813 SIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDGVVAVDGEELAEDMPDEPDNEDD 872

Query: 775 LKNDSS 780
              D  
Sbjct: 873 APVDDE 878


>gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083]
 gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083]
          Length = 920

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/919 (51%), Positives = 619/919 (67%), Gaps = 15/919 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + E E           S+SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENEGESQPVVSTYTGPSISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G    K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHEAGNTHEKSYRKSARAVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K A FLL D+ K+TVDF+ NYDG  +EP VL ARYPN
Sbjct: 121 QGNFGSMDGDNAAAMRYTEVRMDKPAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVV   +A+I+NPD+  + L+  + GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVTATLALIENPDLTTEELIAYVPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+VIR  + +E+   DR  IV+ EIPYQVNK+ M+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVVIRSKTRVEEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQL+R+TS+Q+ F  NM+ALNG +PE  T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFTSMQTYFGCNMLALNGGRPETLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +L  R W A +I + I+LIDD ++ +  DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLKTRRWPAIEIAEYINLIDDPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E L+IL SR R++ II+ EL  V+++   PRRT IV+   DMEDED I
Sbjct: 481 TDELKLLAGKIREYLEILGSRDRIMAIIRDELSEVREKFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVT++  GY+KR PL  +RAQRRGGKG +G+  +DED +T LF+ +THT +LFF+
Sbjct: 541 EREDMVVTITSGGYIKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP+G   A+GKA++NIL +  G  I  IMP   DE  W++L VVFAT 
Sbjct: 601 TDGMSYKLKTWRLPLGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK         ++ V   + ++D++L T  G+ +RF  
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEGEHEGTTLIDVRIASNDDDVMLVTNSGRAIRFRA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R S GVRGI L   D V+SM+++ H +A  DER  Y+K   A   L     +
Sbjct: 721 TDVRVFNSRASTGVRGIKLQGKDTVVSMSVIRHFEATSDERAAYLKMRRAMAGLA---DD 777

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                + +      I++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+ A 
Sbjct: 778 AELPDEEEGDANSQITQERYAEMSAIENLILTITSGGAGKLSSSHDYPLRGRGGMGVTAM 837

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D S     G +VA FPV  +DQI+L + KG  IRVPV+ I   SR+  GV +F+T K+E 
Sbjct: 838 DKSMR--GGEVVASFPVELDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKNES 895

Query: 891 VVSVERIRESEIVDEAEST 909
           VVSV  I +    +  E  
Sbjct: 896 VVSVAWIADQGDDELGEGN 914


>gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 885

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/900 (45%), Positives = 570/900 (63%), Gaps = 68/900 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+  SW   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDVRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+VIS+ I                                             
Sbjct: 723 GINLNGDDRVISLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 788 QVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 847


>gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans]
          Length = 887

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/905 (46%), Positives = 581/905 (64%), Gaps = 39/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIA+ V++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTFGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+   W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I 
Sbjct: 426 SGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 KLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV  T  G V++  L++F
Sbjct: 606 LPQASRGARGRPIVNILPLNENERITAILPVAAYE---EDKFVVMTTAGGIVKKIALTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GVR
Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                                   + + E+++    + +++ NI
Sbjct: 722 GIKLA-------------------------LTNDLNDDESAVEIEDVSDDNAEETLDLNI 756

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      IL  ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 757 DKVVSLVIPKNNGEILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAAA 814

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +NDQI+L++D GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E +  + 
Sbjct: 815 QVEENDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEES 874

Query: 906 AESTE 910
              TE
Sbjct: 875 ENPTE 879



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 99/252 (39%), Gaps = 25/252 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  VV  +  G VK++ L+ +   R  G     + +RDED +  + I      ++ F
Sbjct: 639 YEEDKFVVMTTAGGIVKKIALTEFSRPRSSG--IIALNLRDEDELIGVDITDGSNEIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------ 635
           SS G V +     +          +    AL N L+ ++       +             
Sbjct: 697 SSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAVEIEDVSDDNAEETLDLNI 756

Query: 636 --FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690
                     NN  ++ AT++G  +R KL ++   +R+ K  + +       ++++    
Sbjct: 757 DKVVSLVIPKNNGEILAATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAAAQV 816

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            + + I+L T  G  VR  +S +    GRN+ GVR I  ++ + V+S+  +   D +  E
Sbjct: 817 EENDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEESE 875

Query: 751 RICYMKHMSAQR 762
                   + + 
Sbjct: 876 NPTESAVENNEE 887


>gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
 gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131]
          Length = 898

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/910 (45%), Positives = 583/910 (64%), Gaps = 69/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK 
Sbjct: 35  EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKP 94

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RY
Sbjct: 95  YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 154

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 155 TEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 214

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I
Sbjct: 215 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 274

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V+EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R
Sbjct: 275 RASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMR 334

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV
Sbjct: 335 IVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 394

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  
Sbjct: 395 TRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARSWDLGNVAA 454

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             +G  +L+E Q +AIL+LRL +LTGL  + +  E   L 
Sbjct: 455 MLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLL 514

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           ++I+  L IL S  RL+ +I++EL  ++D  + PRRT I E   D+  ED I +ED+VVT
Sbjct: 515 VQIEALLFILRSPERLMEVIREELEIIRDTYNDPRRTEITENTADINIEDLINQEDVVVT 574

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PLS Y AQRRGGKG+S    +DEDF+  L + +TH ++L FSS G +Y  
Sbjct: 575 LSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTHDTILCFSSRGRLYWM 634

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E E  +N   V  AT  G V++  
Sbjct: 635 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN---VFMATASGTVKKTP 691

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR +
Sbjct: 692 LQEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFAEDAVRPM-GRTA 750

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L   D+V+S+ I                                         
Sbjct: 751 TGVRGIKLMDNDKVVSLII----------------------------------------- 769

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +
Sbjct: 770 ------------PRGEGHILTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GNV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++ DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E++
Sbjct: 816 VGAIQVDETDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETD 875

Query: 902 IVDEA-ESTE 910
             + A E+TE
Sbjct: 876 DDENAIENTE 885



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 68/418 (16%), Positives = 143/418 (34%), Gaps = 35/418 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +      +L      +  + E + IIR + N    RR  +  +   
Sbjct: 502 EHEKLLEEYRDLLVQIEALLFILRSPERLMEVIREELEIIRDTYN--DPRRTEITENTAD 559

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  LS+ + +       +       D I   L +   
Sbjct: 560 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANTH 619

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 620 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYEEGYN-- 677

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+ PL  +   R  G     +   DE    DL        V+ FS
Sbjct: 678 -----VFMATASGTVKKTPLQEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFS 730

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V +     +      A G   I ++  ++                    +++  T+
Sbjct: 731 AQGKVVRFAEDAVRPMGRTATGVRGIKLMDNDK---------VVSLIIPRGEGHILTVTE 781

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R + +++   +R+ +  + +   +     +      + + I++ T  G  VR  +
Sbjct: 782 NGYGKRTEEAEYPTKSRATQGVISIKVSERNGNVVGAIQVDETDQIMMITDAGTLVRTRV 841

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           S +    GRN+ GV  I  A+ ++V+ +  V   D D +      ++      +   +
Sbjct: 842 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAETDDDENAIENTEENGVDDANIDDQE 898


>gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 889

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/917 (42%), Positives = 564/917 (61%), Gaps = 66/917 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +                  + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +  QVI+M +     A    +                      
Sbjct: 719 RPM-GRQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSVAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852

Query: 894 VERIRESEIVDEAESTE 910
           ++R+ ES+  + AES E
Sbjct: 853 LQRVMESDA-EGAESVE 868



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 13/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---- 648
           S  G   +     +     QARG   +N   L + +++  ++  P + +      V    
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEENQQVIAMLVAPAETAGEGAQSVAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  IS+ +G+++  +  V+ +DA+  E +       A     
Sbjct: 822 IRTRVDEIREM-GRATQGVTLISVGEGNKLSGLQRVMESDAEGAESVEGADAADAAPDAD 880

Query: 766 SGDTEEITS 774
           +   +   +
Sbjct: 881 AQPDDSSET 889


>gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2]
 gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2]
          Length = 898

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/924 (41%), Positives = 561/924 (60%), Gaps = 69/924 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS QEP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +  +G   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL +VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   E+ S   + +
Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDHF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG+++ +   VI+M +    D   +                  
Sbjct: 722 FDENDVRPM-GRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVV---------------- 764

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 765 ---------------------------AGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +  +
Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDE 855

Query: 888 DERVVSVERIRESEIVDEA-ESTE 910
             +++ ++RI E++  D A E  E
Sbjct: 856 GAKLIGLQRIVENDANDNAGEDGE 879



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 13/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L+ +   R+ G     V + + D++    +      V+ F
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYV 648
           S  G   +     +      ARG   +N   + + + +  ++    D+ + N    +  V
Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMN---IEEHQNVIAMLVAEADDGTGNVVAGSQSV 770

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 771 LTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVL 830

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  ++ IR   GR + GV  I+L +G ++I +  ++  DA+ +         S      
Sbjct: 831 VRTRVAEIREL-GRATQGVTLINLDEGAKLIGLQRIVENDANDNAGEDGEADDSGSAGAE 889

Query: 766 SGDTEEITS 774
                   S
Sbjct: 890 GAAESGDAS 898


>gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
 gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238]
          Length = 918

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/920 (51%), Positives = 636/920 (69%), Gaps = 18/920 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + +  EE            +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENTEEMPPERPVYDGPQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDALARMAQD+S+ L L++G
Sbjct: 61  RRILYAMYEAGNTHDKPYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A ++L D+ KDTVDF+ NYDG  +EP VL +R+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C+ +I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RTG + AY  GRGS++ R  +H E+   DR  I++TEIPYQVNK+ M+++IAE  R+K+I
Sbjct: 241 RTGARKAYLEGRGSVITRAKTHTEEIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+ ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE  T
Sbjct: 301 EGISHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV+RRT + LNKARDRAHVL GLA+AV+N+DEVV  IR S +  +A
Sbjct: 361 LRRFLTSFLDFREDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM R+W A++I   I LIDD ++   +DGT  LSE+Q RAILELRL RLT +G  ++
Sbjct: 421 RAALMTRAWPAAEILPFILLIDDPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L IL+SR R++ II  EL   K     PRRT+IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLAILASRERIMQIITDELAECKTLFAVPRRTQIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVTV+  GY+KR  L  +RAQ+RGGKG SG  ++++D VT LF+ +THT +LFF+
Sbjct: 541 ESQDMVVTVTETGYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP GS  ++GKA++NIL +  G  I  IMP   DE  W++L +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF ++ R+GKIAMK    +   ++++   C+ ++D++L T  G+ +RF  
Sbjct: 661 AGTVRRNKLSDFTKVMRNGKIAMKFEGENEGVQLINARICSDDDDVMLVTNSGRAIRFAS 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R S+GVRGI L   D+++SM+++ H +A+ DER  Y+K   A   L      
Sbjct: 721 TDVRVFNSRASLGVRGIRLKGDDKIVSMSVIRHFEAESDERAAYLKMRRAMAGLA----- 775

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +   ++++    GNI++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+ A 
Sbjct: 776 DDAEIEDEDVTAGNITQERYAEMSASENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAM 835

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F+T K+E 
Sbjct: 836 D--KAMRGGEIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEI 893

Query: 891 VVSVERIRESEIVDEAESTE 910
           VVSV  I +    ++ ++ E
Sbjct: 894 VVSVAYIADR-ADEDGDADE 912


>gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568]
 gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568]
          Length = 882

 Score =  938 bits (2423), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LSEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTAIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILENPDRLMEVIREELVAIKEQYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYE---EGRHVFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD VIS+ +                                             
Sbjct: 723 GINLGEGDSVISLIVPRGEGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDTTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847

Query: 906 AESTE 910
            +S E
Sbjct: 848 LDSLE 852



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 89/249 (35%), Gaps = 15/249 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G V
Sbjct: 646 VFMATASGTVKKTALTDFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSANGKV 703

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +    ++      A G   IN+   +                      ++  T++G  +
Sbjct: 704 VRFPETQVRSMGRTATGVRGINLGEGD---------SVISLIVPRGEGDILTVTQNGYGK 754

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  ++++   +R+ +  + +       +++        + I++ T  G  VR  +S +  
Sbjct: 755 RTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVDTTDQIMMITDAGTLVRTRVSEV-S 813

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV  I  A+ + V+ +  V     D +          A+      D  + +  
Sbjct: 814 VVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLEPGAEVAEEDAAPLDEGDDSEA 873

Query: 776 KNDSSVEGN 784
            +D+  +  
Sbjct: 874 PDDAEEDNA 882


>gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 924

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/893 (53%), Positives = 630/893 (70%), Gaps = 8/893 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            VSI DEM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G    K Y K AR 
Sbjct: 25  QVSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARA 84

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 85  VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 145 PSASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGE 204

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +A+I NPD+  + L++ +  PDFPTG +ILGRTG + AY  GRGS+VIR  + +E
Sbjct: 205 IIDATLALITNPDLTSEELIQYVPAPDFPTGGIILGRTGARKAYIEGRGSVVIRAKTRVE 264

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNKA+++EKIAE VR+KRI  I+ ++DESDR G RVV+ELKR 
Sbjct: 265 EIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELKRD 324

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL   L +F+ FREEVV RRT + L
Sbjct: 325 ATAEVVLNQLFRFTPMQTSFGCNMLALNGGRPEQLTLRRFLTSFLDFREEVVARRTAFEL 384

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV+N+DE+V  IR S +P  AR +LM R W A+DI + I LIDD 
Sbjct: 385 RKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALIDDP 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++    DGT  LSE Q RAILELRL RLT LG  ++ +EL  L   I+E L+IL+SR R+
Sbjct: 445 THRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRERI 504

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  VKD+   PRR+ I++   DMEDED I  EDMVVTV+  GY+KR PL+ +R
Sbjct: 505 MGIITDELQEVKDKFAVPRRSEIIDWSGDMEDEDLIESEDMVVTVTATGYIKRTPLADFR 564

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQ+RGGKG SG+  +++D VT+LF+ +THT +LFF++ G VYK K WRLP G   A+GKA
Sbjct: 565 AQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLPQGGRTAKGKA 624

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +INIL + QG  +  +MP   DE  W +L +VFAT  G+VRRN LSDF  + R+GKIAMK
Sbjct: 625 IINILPIPQGVSVAAVMPVDRDEDDWGDLQIVFATTAGDVRRNALSDFTNVMRNGKIAMK 684

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L    E+++   C++++D++L T  G+ +RF  + +RVF GR+S GVRGI LA+G  V+S
Sbjct: 685 LPEGVELVNARICSEDDDVMLVTDAGRAIRFRTTDVRVFKGRDSTGVRGIRLAEGRSVVS 744

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA++ H +A  ++R  Y+K     RR + G ++++    ++ +     + E+ +E++  E
Sbjct: 745 MAVIRHFEASAEDRAAYLK----MRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAE 800

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT+S  G GK +SS+D+ +  R G+G+ A D  K    G LVA FPV   DQI+L +
Sbjct: 801 DLILTISNGGSGKLSSSHDYPVRGRGGQGVAAMD--KAMRGGPLVACFPVEIEDQIMLAT 858

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             G  IR P+  I   SR+  GV +F TAK E VVSV  I   +  DEAE  E
Sbjct: 859 STGQSIRCPIKGISFRSRSAGGVKVFDTAKKETVVSVALIA--DQGDEAEDAE 909



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 13/236 (5%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D V+ V+  G   R   +  R     G+  +GV          +  ++        +
Sbjct: 698 SEDDDVMLVTDAGRAIRFRTTDVRV--FKGRDSTGVRGIRLAEGRSVVSMAVIRHFEASA 755

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                Y               G +       ++     T      +E       ++  + 
Sbjct: 756 EDRAAY-------LKMRRAVEGMSDDVDGEDDEVAASDTFTMEQYEEMRAAEDLILTISN 808

Query: 654 HGNVRRNKLSDF-IQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G+ + +   D+ ++      +A   K      +++      E+ I+L T  GQ +R PI
Sbjct: 809 GGSGKLSSSHDYPVRGRGGQGVAAMDKAMRGGPLVACFPVEIEDQIMLATSTGQSIRCPI 868

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             I  F  R++ GV+    AK + V+S+A++     + ++     +    +    +
Sbjct: 869 KGI-SFRSRSAGGVKVFDTAKKETVVSVALIADQGDEAEDAEIISETGPEETTTSA 923


>gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
 gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1]
          Length = 936

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/905 (52%), Positives = 637/905 (70%), Gaps = 21/905 (2%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
               E   I+ +SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G   
Sbjct: 24  PPPIENSDISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVP 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y K A+I G+VMG YHPHG+++IYDALAR+AQDW++R+ LI+GQGNFGS+D DPPA+
Sbjct: 84  GRPYRKSAKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPAS 143

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LLDDL KDTV+F PNYDGS  EP VL AR+PN+LVNG GGIAVGMA
Sbjct: 144 MRYTEARLAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMA 203

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+  C A +DNP I +D LM I+ GPDFPTGA+ILG++G + AY TGRGS
Sbjct: 204 TNIPPHNLGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALILGQSGARQAYHTGRGS 263

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    +E++ GDR  IV+TEIPYQV K+ ++EKIAE  ++KRI  I+D+RDES+RQG
Sbjct: 264 IIMRSRHEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQG 323

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V++LKR A+ DV+LNQL+R+T  Q+ F  NM+A+ G +PE   L  I+++FV FREE
Sbjct: 324 VRIVMDLKRDATPDVVLNQLWRHTPAQTSFPANMLAIRGGRPETLNLRDIVESFVKFREE 383

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+K+ LNKAR+RAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R W   +I
Sbjct: 384 VITRRSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEI 443

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           +  I L++    TIG   T  LSEVQ RAIL+LRL RLT LGRD+I +EL  L   I E 
Sbjct: 444 ESYIKLVEAVD-TIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAEL 502

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           L+IL +R RL  ++ +E  ++  E  TPRRT I     D++DED I REDMVVTV+H GY
Sbjct: 503 LEILGNRVRLYQVMVEEFDAILVEFATPRRTEIAPAGDDIDDEDLIEREDMVVTVTHGGY 562

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR PL  +RAQRRGGKGRSG+  +DED VT+LF+ STHT VLFFS+ G VY++KVWRLP
Sbjct: 563 IKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVWRLP 622

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G+PQARG+ +IN+L L  GE+ITT++P PEDE SW+ L+VVFAT HGNVRRN +  F  
Sbjct: 623 EGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGNVRRNSMDAFAN 682

Query: 668 INRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +  +GK AM+ D    D ++ V   T+++D+LL T+ G+ +RF  + +R F  R S GVR
Sbjct: 683 VPTNGKFAMRFDEDATDRLIGVALLTEQDDVLLATRGGKAIRFASTDVREFQSRTSTGVR 742

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   D+VIS++I+   DA  DER  Y++    +                D+  +  +
Sbjct: 743 GILLKGDDEVISLSILKGFDASTDERDAYLRAAPWK----------------DNEADPTL 786

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S ER  E +  E+FILTV   G+GKR+S+Y++R + R G+GI   D  + N  G +VA F
Sbjct: 787 SAERMAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGIGNIDNLERN--GPVVASF 844

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           P ++ +Q++LV+D+  LIR+ V + R+  R + GV +F+ + +E VV   RI ES+   E
Sbjct: 845 PAHNGEQLMLVTDQAKLIRLSVGDTRVIGRNSAGVRLFNVSDNEHVVGAARIEESDDEAE 904

Query: 906 AESTE 910
           A+  +
Sbjct: 905 ADLGD 909



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 38/288 (13%)

Query: 531 DCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                E+   T+     +  G V+R  +  +      GK          D +  + +++ 
Sbjct: 650 PLPEDEESWSTLHVVFATAHGNVRRNSMDAFANVPTNGKFAMRFDEDATDRLIGVALLTE 709

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              VL  +  G   +     +     +        +L  +      +I+   +  +   +
Sbjct: 710 QDDVLLATRGGKAIRFASTDVREFQSRTSTGVRGILLKGDDEVISLSILKGFDASTDERD 769

Query: 646 LYV---------------------------VFAT--KHGNVRRNKLSDFIQINRSGKIAM 676
            Y+                              T   +G  +R+   ++ +  R G+   
Sbjct: 770 AYLRAAPWKDNEADPTLSAERMAEFEAAEEFILTVCANGYGKRSSAYEYRRTGRGGQGIG 829

Query: 677 KLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +D+ +    V           ++L T   + +R  +   RV  GRNS GVR  +++  +
Sbjct: 830 NIDNLERNGPVVASFPAHNGEQLMLVTDQAKLIRLSVGDTRVI-GRNSAGVRLFNVSDNE 888

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            V+  A +  +D + +  +       A         +     +     
Sbjct: 889 HVVGAARIEESDDEAEADLGDGTGEIAPADDAVVGEDLADGGEASGDE 936


>gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246]
 gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246]
          Length = 905

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/891 (51%), Positives = 633/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
 gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A
 gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7]
          Length = 905

 Score =  937 bits (2422), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/891 (50%), Positives = 633/891 (71%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE    +R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +   A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNPEELGVSLTAPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 130b]
          Length = 863

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/906 (45%), Positives = 570/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               ++             +    LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V                                           
Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 741 -----------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
 gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic]
          Length = 905

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/891 (51%), Positives = 632/891 (70%), Gaps = 8/891 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 3   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYDAL RMAQD+SLRL L+EGQGNFGS+DGD  AA R
Sbjct: 63  PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 243 MRGRAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV FRE V+
Sbjct: 303 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVNFREVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM R W A +I  
Sbjct: 363 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILP 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 423 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLN 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 482 ILGSRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 542 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L DF ++ 
Sbjct: 602 NPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLDFKKLQ 661

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ L
Sbjct: 662 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKL 721

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 722 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNSEELGVSLTVPA 776

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 777 IVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 834

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E+
Sbjct: 835 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAET 885


>gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937]
 gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937]
          Length = 877

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/903 (45%), Positives = 577/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D ++ +IR +  P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E+Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL++++++ +  RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELVAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEPDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ +                                             
Sbjct: 723 GINLQDDDRVVSLIVPRGEGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE+VV ++R+ E    DE
Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            +S
Sbjct: 848 LDS 850



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 86/245 (35%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      A G   IN+   ++                     ++  T++G  
Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGEGDILTVTQNGFG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +       +++        + I++ T  G  VR  +S + 
Sbjct: 754 KRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDSADQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ +QV+ +  V     D +               I     +  +
Sbjct: 813 SIVGRNTQGVTLIRTAEDEQVVGLQRVAEPVEDDELDSVVPVDGELPEEDIDEPENDDDT 872

Query: 775 LKNDS 779
             +D 
Sbjct: 873 PADDE 877


>gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 887

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/905 (46%), Positives = 582/905 (64%), Gaps = 39/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + IT VS+ +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  +NK Y K
Sbjct: 6   QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++A+YD L RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TV+F PNYDGS   P VL  + P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N DI +D LM  I GPDFPT A+I GR GI+ AY TGRG I +R  
Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALINGRKGIEEAYKTGRGKIYVRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+V EIPYQVNKA ++EKIA+ V++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q    +N+VAL+  +P+   L  +++AFV  R EVV RRT
Sbjct: 306 IKRDAVGEVVLNNLYALTQMQVTLGINIVALDHGQPKLLNLKQLIEAFVLHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GLAIA+AN+D ++ +IR +PNPE A+REL+   W    + D++  
Sbjct: 366 IFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLTHPWQLGHVADMLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+EVQ +AIL+LRL +LT LG D+I +E   L   I 
Sbjct: 426 SGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLDAIG 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           + L IL S  RL+ +I++EL  ++++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 486 KLLYILRSPERLMEVIREELEQIREQFNDPRRTEITAASGDINLEDLIAQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++NIL LN+ ERIT I+P    E    + +VV AT  G V++  L++F
Sbjct: 606 LPQASRGARGRPIVNILPLNENERITAILPVAAYE---EDKFVVMATAGGIVKKITLTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + GVR
Sbjct: 663 SRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFSESAVRAM-GRLATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA                                   + + E+++    + +++ NI
Sbjct: 722 GIKLA-------------------------LTNDLNDDESAVEIEDVSDDNAEETLDLNI 756

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +      ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA  
Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERN--GKVVAAA 814

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +NDQI+L+++ GTL+R  V+E+ I  R T+GV +  T++ E VVS+ERI E +  + 
Sbjct: 815 QVEENDQIMLITNAGTLVRTRVSEVSIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEES 874

Query: 906 AESTE 910
              TE
Sbjct: 875 ENPTE 879



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 100/252 (39%), Gaps = 25/252 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  VV  +  G VK++ L+ +   R  G     + +RDED +  + I      ++ F
Sbjct: 639 YEEDKFVVMATAGGIVKKITLTEFSRPRSSG--IIALNLRDEDELIGVDITDGSNEIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------ 635
           SS G V +     +          +    AL N L+ ++       +             
Sbjct: 697 SSQGRVVRFSESAVRAMGRLATGVRGIKLALTNDLNDDESAVEIEDVSDDNAEETLDLNI 756

Query: 636 --FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690
                     NN  ++ AT++G  +R KL ++   +R+ K  + +       ++++    
Sbjct: 757 DKVVSLVIPKNNGEILTATQNGYGKRTKLDEYPTKSRNTKGVISIKVSERNGKVVAAAQV 816

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            + + I+L T  G  VR  +S +    GRN+ GVR I  ++ + V+S+  +   D +  E
Sbjct: 817 EENDQIMLITNAGTLVRTRVSEV-SIVGRNTQGVRLIRTSEAEHVVSLERICEVDDEESE 875

Query: 751 RICYMKHMSAQR 762
                   +++ 
Sbjct: 876 NPTESAVENSEE 887


>gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E]
 gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 888

 Score =  937 bits (2421), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/910 (46%), Positives = 585/910 (64%), Gaps = 40/910 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G  +NK
Sbjct: 2   TELVQDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA R
Sbjct: 62  SYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+Q+    LL DL K+TVDF PNYDG    P VL  + P++LVNG  GIAVGMATN
Sbjct: 122 YTEVRMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DGC+A +DN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + 
Sbjct: 182 IPPHNLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVY 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + +E     REQI++TEIPYQVNKA ++EKI ELVR+K+I  IA + D S+++G R
Sbjct: 242 VRAKASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++AFV  R EVV
Sbjct: 302 LEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEAFVKHRREVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W+  ++  
Sbjct: 362 TRRTVYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAP 421

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG  +LSE Q RAILELRL RLTGL  + I  E + + 
Sbjct: 422 MLEAAGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEIL 481

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           ++I E + IL+S  RL  +I++EL  VK   +  RRT I     D+  ED I +ED+VVT
Sbjct: 482 LQIGELIRILTSSVRLNEVIREELELVKSTYNDERRTEITAASGDINLEDLIAQEDVVVT 541

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y  
Sbjct: 542 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSSRGRLYWL 601

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++NIL L   ERIT I+P    +    + +VV AT  G V++  
Sbjct: 602 KVYQLPEASRGARGRPIVNILPLEDNERITAILPVASYD---EDKFVVMATACGIVKKTA 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR +
Sbjct: 659 LTEFSRPRANGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAEAAVRAM-GRTA 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA                                   + + EEI+    + ++
Sbjct: 718 TGVRGIKLA-------------------------LTNDISDDESAVEIEEISDDNAEDTL 752

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           + NI +     +   E  ILT ++ G+GKRT+  ++   +R+ KG+ +  VS+ N  G +
Sbjct: 753 DLNIDKVVSLVIPKNEGAILTATQNGYGKRTALNEYPTKSRNTKGVISIKVSERN--GKV 810

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+ER+ E E
Sbjct: 811 VAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLERVAEPE 870

Query: 902 IVD-EAESTE 910
             + +AES E
Sbjct: 871 EDEFDAESPE 880


>gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396]
 gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396]
          Length = 879

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/915 (44%), Positives = 564/915 (61%), Gaps = 74/915 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH +L DL K+TVDF PNYDGS Q PVVL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GC+A +DN DI +D LME I GPDFPT A+I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVVNGCLAYLDNSDITIDELMEFIPGPDFPTAAIINGRAGILEAYRTGRGRIYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE      +E IV+TEIPYQVNKA ++EKIAELV+EK++  I +LRDES ++G R
Sbjct: 243 RARYEIEQDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG +ADV++N L+  T L+++F +NMVAL   +P+   L   ++ FV  R EVV
Sbjct: 303 VVIELRRGENADVLMNNLFALTPLETVFGINMVALINGEPKLLNLKDCIECFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L G A+A+AN+D V+ +I+ S     A+  LM + W    +  
Sbjct: 363 TRRTIYELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTG 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  YLSEVQ ++IL+LRL +LTGL  + I +E  S+ 
Sbjct: 423 MLERAGEDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSII 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E L+IL +  RL+ +I++EL +V++E    R T I     D+   D I  EDMVVT
Sbjct: 483 EQIAELLEILQNPERLMAVIREELEAVREEFGDVRVTEITASKRDLTIADLIAEEDMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL  Y+AQ+RGGKG++   +RDEDFV  L I ++H ++L F+S G +Y  
Sbjct: 543 LSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S  +RG+ ++NIL L + ERITT++P  E      + YV  AT+ G V++  
Sbjct: 603 KTYEIPQASRISRGRPIVNILPLAENERITTMLPVREYT---ADHYVFMATRQGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++       + D++L +  G+ +RF    +R   GR +
Sbjct: 660 LENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA+G  V+S+ I                                         
Sbjct: 719 RGVRGIRLAQGQTVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++ +ILT S KG+GKRT+  +F +  R G+G+ A   S+ N  G L
Sbjct: 738 ------------PQEDAYILTASRKGYGKRTAVSEFPVYGRGGQGVIAIQCSERN--GDL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+   V   DQ++L+S++GTL+R   +E+ I  R T+GV +   ++ E +V VERI E E
Sbjct: 784 VSAVQVISGDQLMLISNQGTLVRTRSDEVSIVGRNTQGVRLIRLSESEDLVGVERIAEPE 843

Query: 902 IV------DEAESTE 910
                   +E E  E
Sbjct: 844 EDESDFQGEEGEGVE 858



 Score = 74.1 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/243 (18%), Positives = 89/243 (36%), Gaps = 17/243 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL  +   R  G     + + + D +    I      V+ F
Sbjct: 640 YTADHYVFMATRQGTVKKTPLENFSRPRSSG--LIALALDEGDMLIGAAITDGKKDVMLF 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G   +     +      ARG   I         R+              + Y++ A+
Sbjct: 698 SSSGKAIRFNEDDVRPMGRTARGVRGI---------RLAQGQTVVSLIIPQEDAYILTAS 748

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRF 708
           + G  +R  +S+F    R   G IA++      D + +V+  +  + ++L +  G  VR 
Sbjct: 749 RKGYGKRTAVSEFPVYGRGGQGVIAIQCSERNGDLVSAVQVISG-DQLMLISNQGTLVRT 807

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +    GRN+ GVR I L++ + ++ +  +   + D  +                 D
Sbjct: 808 RSDEV-SIVGRNTQGVRLIRLSESEDLVGVERIAEPEEDESDFQGEEGEGVEAVDGDDLD 866

Query: 769 TEE 771
           + +
Sbjct: 867 SGD 869


>gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
 gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196]
          Length = 893

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/905 (42%), Positives = 563/905 (62%), Gaps = 70/905 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 34  DQFAKETLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 93

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD PAA R
Sbjct: 94  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMR 153

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH +L DL K+TVDF PNYDG+ +EP++L  + PN+L+NG  GIAVGMATN
Sbjct: 154 YTEIRMSRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATN 213

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV D C+A++ NP+I ++ L+E+I GPDFPT A+I G TG+K  Y TGRG ++
Sbjct: 214 IPPHNLNEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIYGVTGVKEGYRTGRGRVI 273

Query: 250 IRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +H E       R+ IV+ E+PYQVNKA +L +I ELVR+K+I  I+DLRDESD+ G
Sbjct: 274 MRARTHFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSG 333

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R    +V+LN LY+ T +Q  F +NMVAL   +P    L  +L+AF+  R E
Sbjct: 334 MRVVIELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRRE 393

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+ + L KAR+R HVL GLA+A++N+DEV+ +I+ +  P  A+  LM R W +  +
Sbjct: 394 VVTRRSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLV 453

Query: 428 KDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + ++      +     +G            +LS+ Q +AILELRL RLTGL +D I +E 
Sbjct: 454 EQMLARAAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQDKIVSEY 513

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I + LDIL+   R+  II +EL+++K +    RR+ IV    D+  ED I  ED
Sbjct: 514 RDVMERIADLLDILARPERITAIITEELVAMKQQFGDKRRSEIVINTQDLSMEDLIASED 573

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K  PL  YRAQ+RGG+G+     +D+DF+ +LFI +TH  +L FSS G 
Sbjct: 574 VVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILCFSSRGR 633

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  KV+ +P G   +RG+ ++N++ L  GE+I  ++P    +   +N YV  AT  G V
Sbjct: 634 VYWIKVYSVPQGGRASRGRPIVNLMQLEYGEKINAVLPIKTFD---DNRYVFMATSLGTV 690

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  LS+F +   SG IA+ LD  D ++ V     ++D++L +  G+ VRF  + +R   
Sbjct: 691 KKTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDENDVRPM- 749

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG++L KG +VIS+ +                                     
Sbjct: 750 GRGARGVRGMTLGKGQKVISLLVAESE--------------------------------- 776

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              EQ +LT +E G+GKRT   ++    R  +G+ A   ++ N 
Sbjct: 777 -------------------EQAVLTATENGYGKRTPISEYTRHGRGSQGMIAIKTTQRN- 816

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V ++D+I+L++  G LIR  V E+R  SRAT+GV++ +  + E++  +ER+
Sbjct: 817 -GKVVGARLVREDDEIMLITTGGVLIRTRVKEVREMSRATQGVILINLDEGEKLAGLERV 875

Query: 898 RESEI 902
            E++ 
Sbjct: 876 VETDE 880



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 97/214 (45%), Gaps = 14/214 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   + LG VK+ PLS +   R  G     V + ++DF+  + +      V+ FS  G 
Sbjct: 680 YVFMATSLGTVKKTPLSEFSRPRASG--IIAVGLDEDDFLIGVALTEGKHDVMLFSDGGK 737

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      ARG   +  ++L +G+++ +++      +      V+ AT++G  
Sbjct: 738 AVRFDENDVRPMGRGARG---VRGMTLGKGQKVISLL-----VAESEEQAVLTATENGYG 789

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  +S++ +  R  +  + +       +++      ++++I+L T  G  +R  +  +R
Sbjct: 790 KRTPISEYTRHGRGSQGMIAIKTTQRNGKVVGARLVREDDEIMLITTGGVLIRTRVKEVR 849

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             + R + GV  I+L +G+++  +  V+  D   
Sbjct: 850 EMS-RATQGVILINLDEGEKLAGLERVVETDEAP 882


>gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999]
          Length = 885

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/909 (44%), Positives = 576/909 (63%), Gaps = 67/909 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK
Sbjct: 2   TDRAKEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TV+F PNYDG+ + P V+  R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEVRMSKIAHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GCVA+I+NP   ++ L+E I GPDFPT A+I GR GI+ AY TGRG I 
Sbjct: 182 IPPHNLTEVINGCVALIENPACTIEELIEYIPGPDFPTAAIISGRKGIEEAYRTGRGKIY 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R
Sbjct: 242 LRARAEIEREDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR  SA+V+LN LY  T LQ++F +NMVAL+  +P+ F L   L+ F+  R EVV
Sbjct: 302 IVIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNNQPKVFNLKDTLECFILHRREVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KARDRAH+L GLAIA+AN+D V+ +I+ SP+P  A+ +L  + W   D+ +
Sbjct: 362 TRRTVYELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAE 421

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             DG  YL+E Q +AIL+LRL +LTGL  D I +E   L 
Sbjct: 422 MLERAGDDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLL 481

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L IL S  RL+ +I++EL +++DE    RRT I     D++ ED I RED+VVT
Sbjct: 482 DVIAELLRILGSSERLMEVIREELEAIRDEFGDDRRTEITAASHDIDLEDLIEREDVVVT 541

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y AQ+RGGKG+S   M+DEDF+  L + +TH  +L FS+ G +Y  
Sbjct: 542 LSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLYWL 601

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S  ARG+ ++NIL L +GERIT I+P  E     +  YV  AT +G V++ +
Sbjct: 602 KVYQLPLASRNARGRPIVNILPLEEGERITAILPIKEFV---DGKYVFMATTNGTVKKTE 658

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ + +   +G IA+ L+  +E++ V+    +++I+L +  G+ VRF    +R   GR +
Sbjct: 659 LTQYSRPRANGIIAVNLNDGNELIGVDLTDGDSEIMLFSDAGKVVRFHEEQVRPM-GRTA 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L +  +V+S+ +                                         
Sbjct: 718 TGVRGIRLEEDQKVVSLIV----------------------------------------- 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E  +LT +E G+GKRT   ++   +R+ KG+ +  VS+ N  G +
Sbjct: 737 ------------PQGEGAVLTATENGYGKRTDIAEYPAKSRATKGVVSIKVSERN--GLV 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    VN++D+I+L+SD+GTL+R    E+    R T+GV +  T ++E VV ++RI E E
Sbjct: 783 VGAVQVNEDDEIMLISDQGTLVRTRATEVSTVGRNTQGVTLIRTGENENVVGLQRIDEVE 842

Query: 902 IVDEAESTE 910
             +     E
Sbjct: 843 SSNIETDEE 851



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 101/255 (39%), Gaps = 15/255 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             V   +  G VK+  L+ Y   R  G     +   +E    DL      + ++ FS  G
Sbjct: 643 KYVFMATTNGTVKKTELTQYSRPRANGIIAVNLNDGNELIGVDL--TDGDSEIMLFSDAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A G   +  + L + +++ +++             V+ AT++G 
Sbjct: 701 KVVRFHEEQVRPMGRTATG---VRGIRLEEDQKVVSLI------VPQGEGAVLTATENGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  ++++   +R+ K  + +   +     +      ++++I+L +  G  VR   + +
Sbjct: 752 GKRTDIAEYPAKSRATKGVVSIKVSERNGLVVGAVQVNEDDEIMLISDQGTLVRTRATEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I   + + V+ +  +   ++   E       + A    ++ D +   
Sbjct: 812 STV-GRNTQGVTLIRTGENENVVGLQRIDEVESSNIETDEEGNVIEADAVTVTTDIDSAQ 870

Query: 774 SLKNDSSVEGNISEE 788
            L +D+   G+   E
Sbjct: 871 PLASDNESTGSDDTE 885


>gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44]
 gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44]
          Length = 898

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/924 (41%), Positives = 560/924 (60%), Gaps = 69/924 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +  +G   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL +VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   E+ S   + +
Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQEGEKINVVLPLTGENRSFPEDHF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG+++ +   VI+M +    D   +                  
Sbjct: 722 FDENDVRPM-GRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVV---------------- 764

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 765 ---------------------------AGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +  +
Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDE 855

Query: 888 DERVVSVERIRESEIVDEA-ESTE 910
             +++ ++RI E++  D A E  E
Sbjct: 856 GAKLIGLQRIVENDANDNAGEDGE 879



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 104/249 (41%), Gaps = 13/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L+ +   R+ G     V + + D++    +      V+ F
Sbjct: 656 FPEDHFVFMATSMGTVKKTALTEFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYV 648
           S  G   +     +      ARG   +N   + + + +  ++    D+ + N    +  V
Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMN---IEEHQNVIAMLVAEADDGTGNVVAGSQSV 770

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 771 LTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVL 830

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  ++ IR   GR + GV  I+L +G ++I +  ++  DA+ +         S      
Sbjct: 831 VRTRVAEIREL-GRATQGVTLINLDEGAKLIGLQRIVENDANDNAGEDGEADDSGSAGAE 889

Query: 766 SGDTEEITS 774
                   S
Sbjct: 890 GAAESGDAS 898


>gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
 gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Lens]
          Length = 863

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/906 (45%), Positives = 570/906 (62%), Gaps = 68/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GL IA+AN+DE++ +I+ S  P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               ++             +    LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V                                           
Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 741 -----------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIV 903
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I +  E +
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAVVGMQKIVDLGEEL 847

Query: 904 DEAEST 909
           +EAE +
Sbjct: 848 EEAEDS 853


>gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718]
 gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC
           19718]
          Length = 848

 Score =  936 bits (2420), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/905 (42%), Positives = 565/905 (62%), Gaps = 69/905 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C+ ++ +PD+D+  LM  I  PDFPT  +I G +GIK+ Y TGRG ++
Sbjct: 182 IPPHNLGEVIDACLLLLRDPDVDIAELMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   G+R  I++ E+PYQVNKA +L +I ELVR+KRI  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T +Q  F +NMVAL   +P    L  +L  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDHFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A++ LM R+W +S ++
Sbjct: 362 VTRRTLFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVE 421

Query: 429 DLIDLIDDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++      +              SD    LS+ Q +AIL+LRL RLTGL ++ I +E  
Sbjct: 422 EMLLRAMIDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYR 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I++ LDIL++  R+  II +EL ++K +   PRR+ +V    ++  ED I   DM
Sbjct: 482 EILDKIRDLLDILANPERITTIIVEELTAIKGQFGDPRRSEVVIDAQNLNTEDLITPADM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  YRAQ+RGG+G+  +  R++DF+ +LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P GS  +RG+ + N++ L Q E+I  ++P    +   +  YV  +T  G V+
Sbjct: 602 YWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPVKSFD---DTRYVFMSTAGGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ V     ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L  G QVIS+ +  + +                                 
Sbjct: 718 RNARGVRGMKLGAGQQVISLLVADNENMA------------------------------- 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LT +E G+GKRT   ++   NR  +G+ A + +  N  
Sbjct: 747 ---------------------VLTATENGYGKRTPITEYTRHNRGTQGMIAINTNVRN-- 783

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA   V  +D+I+L++  G +IR  V+EIR   RAT+GV + +    E++  +ERI 
Sbjct: 784 GKVVAAQLVESSDEIMLITTGGVMIRTRVSEIREMGRATQGVTLINLDAGEKLAGLERIV 843

Query: 899 ESEIV 903
           E++  
Sbjct: 844 ETDED 848


>gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
 gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389]
          Length = 905

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/900 (51%), Positives = 634/900 (70%), Gaps = 15/900 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT++           +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M
Sbjct: 1   MTDN-------NSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   N+ Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+
Sbjct: 54  HEAGNHANRAYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH L++D+ K+TV F PNYDGS +EP VL + +PN+LVNG G
Sbjct: 114 DGDAAAAMRYTESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSG 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D C   +DN DI++  L+E+++GPDFPT  +ILG  GIK+A
Sbjct: 174 GIAVGMATNIPPHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI IRG + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLR
Sbjct: 234 YLTGRGSIAIRGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLR 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+ IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ A
Sbjct: 294 DESNKNGIRIYIELKKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV+FRE V+  RT YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +P  A++ELM R
Sbjct: 354 FVSFREVVITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMAR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           SW+A +I  L+ L+DD +  +  +G    +E Q +AILE+RL RLT + ++ +  +L +L
Sbjct: 414 SWDALNILPLVKLVDDKAM-LNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI E L+IL SR RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVV
Sbjct: 473 ATEITEYLNILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVV 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KRVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY 
Sbjct: 533 TVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYS 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K+++LP+ +PQ +G+ ++NIL L   E IT IMP PE++  W+NL ++FAT  GN+RR+
Sbjct: 593 LKLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRS 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF +I  +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R 
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GVRG+ LA+ D VISM ++    A  +ER  Y+     +R  I+   E      N   
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEE-----FNSEE 767

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +  +++ E   E+   E+FILTV+E GFGKR+S+Y +RI++RSG GI   D++  ++ G 
Sbjct: 768 LGVDLTAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRSGSGIINMDIN--DKTGL 825

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V V PV  +D+++L+++ G LIR  +  +RI  R T GV +F     E+VVS   I ES
Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAES 885


>gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586]
 gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586]
          Length = 877

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/903 (44%), Positives = 574/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LM  I GPDFPT A+I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LSEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKDILAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +IR +  P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG   L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL +++++ +  RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELEAIREQYNDARRTEITHNSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ +                                             
Sbjct: 723 GINLQDDDRVVSLIVPRGDGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA++ERVV ++R+ E    DE
Sbjct: 788 QVDTADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            +S
Sbjct: 848 LDS 850



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 88/245 (35%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      A G   IN+   ++                  +  ++  T++G  
Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGDGDILTVTQNGFG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +       +++        + I++ T  G  VR  +S + 
Sbjct: 754 KRTAVTEYPVKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ ++V+ +  V     D +            +  I     +  +
Sbjct: 813 SIVGRNTQGVTLIRTAEEERVVGLQRVAEPVEDDELDSVVPVDGELPQEDIDEPESDDDA 872

Query: 775 LKNDS 779
             +D 
Sbjct: 873 PADDE 877


>gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126]
          Length = 904

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/927 (44%), Positives = 574/927 (61%), Gaps = 87/927 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK 
Sbjct: 3   DNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GCVA+I +P I +D LM  I GPDFPT A+I GR GI++AY TGRG I +
Sbjct: 183 PPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE  S  +E IVV EIPYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+
Sbjct: 243 RAKAEIETDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR  SA+V+LN LY  T LQ++F +NMVAL+  +P+ F L   L+ F+  R EVV 
Sbjct: 303 VIEVKRNESAEVLLNHLYANTQLQTVFGINMVALDNGQPKVFNLKETLECFILHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P  A++ L+ + W+  D+  +
Sbjct: 363 RRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++   D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   L  
Sbjct: 423 LERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E L IL+S  RL+ +I++EL  V+DE    RRT I     D++ ED I +ED+VVT+
Sbjct: 483 IIAELLHILNSPERLMEVIQEELEKVRDEFGDERRTEITAASHDIDIEDLIEQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GYVK   L+ Y AQRRGG+G+S   M+DEDF+  L + +TH  +L FS+ G +Y  K
Sbjct: 543 SREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLYWLK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  ARG+ ++NIL L + ERIT I+P  E E      +V+ AT +G V++  L
Sbjct: 603 VYQLPFASRNARGRPIVNILPLEENERITAILPIKEFE---EGKFVLMATANGTVKKTDL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS----------- 711
           S + +   SG IA+ L+  DE++ V+    ++DI+L +  G+ VRF              
Sbjct: 660 SLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGEVKR 719

Query: 712 ---------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                    A+R   GR + GVRGI L  G +V+S+ +                      
Sbjct: 720 DPETGEELLALRPM-GRTATGVRGIRLQDGQKVVSLIV---------------------- 756

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                             +  ILT +E GFGKRT   D+   +R
Sbjct: 757 -------------------------------PKGDGPILTATENGFGKRTPLEDYPAKSR 785

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           + +G+ +  VS+ N  G +V    V++ ++I+L+SD+GTL+R  V E+ +  R T+GV +
Sbjct: 786 ATQGVVSIKVSERN--GKVVGAVQVDETNEIMLISDQGTLVRTRVGEVSVVGRNTQGVRL 843

Query: 883 FSTAKDERVVSVERIRESEIVDEAEST 909
             T + E VV ++RI E E + E +  
Sbjct: 844 IRTVEGEHVVGLQRIEEVEELQEFDED 870



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 65/440 (14%), Positives = 140/440 (31%), Gaps = 38/440 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +    ++  L   + + + ++ +I+     E  +          ++I      ID 
Sbjct: 474 LEEYKQLLEIIAELLHILNSPERLMEVIQE----ELEKVRDEFGDERRTEITAASHDIDI 529

Query: 437 SSYTIGSDGTMYLS-EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                  D  + LS E   +             GR     ++     +  E L + ++  
Sbjct: 530 EDLIEQEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKD--EDFIERLLVANTHD 587

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L    +  L        P  +R   G   +        E +   +             
Sbjct: 588 HILCFSTRGRLYWLKVYQLPFASRNARGRPIVNILPLEENERITAILPIKEFEEGKFVLM 647

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+  LS+Y   R  G     +   DE    D+        ++ FS  G V + 
Sbjct: 648 ATANGTVKKTDLSLYSRPRSSGIIAVNLNEGDELIGVDI--THGDDDIMLFSDAGKVVRF 705

Query: 602 K--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVF 650
              +     G  +   +    +L+L    R  T +                   +  ++ 
Sbjct: 706 NEKLRDSETGEVKRDPETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGDGPILT 765

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT++G  +R  L D+   +R+ +  + +       +++      + N+I+L +  G  VR
Sbjct: 766 ATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGKVVGAVQVDETNEIMLISDQGTLVR 825

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +    GRN+ GVR I   +G+ V+ +  +   +   +        +S      + 
Sbjct: 826 TRVGEV-SVVGRNTQGVRLIRTVEGEHVVGLQRIEEVEELQEFDEDGNLIISDDAPEQAE 884

Query: 768 DTEEITSLKNDSSVEGNISE 787
              +      +        E
Sbjct: 885 TAVQEQENTAEDGDGSTTEE 904


>gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
 gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212]
          Length = 852

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 559/906 (61%), Gaps = 69/906 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   NQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYD S +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+ C+A++ N +I +D L+++I  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVEACLALLKNSNISIDELIDLIPAPDFPTAGIIYGVNGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       Q I++ E+PYQVNKA +L +I ELVR+K+I  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEDLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T +Q  F +NMVAL   +P    L  IL AF+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGMNMVALLDGQPRLLNLKQILDAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+  LM ++W++  ++
Sbjct: 362 VTRRTVFELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVE 421

Query: 429 DLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++      +  +  +G            +LS+ Q +AILELRL RLTGL ++ I  E  
Sbjct: 422 EMLTRAMADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYK 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I + LDIL++  R+  II +EL ++K +    RR+ IV    D+  ED I   D+
Sbjct: 482 DVIEKIIDYLDILANPERITQIITEELDAIKLQFGDERRSEIVVDTQDLSMEDLITPADV 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  YRAQ+RGG+G+     +++DF+  LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P G  Q+RGK +IN + L +GE+I  I+P    +    N +V  AT  G V+
Sbjct: 602 YWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPVKTFD---ENRFVFMATSFGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ VE    ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPM-G 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ L  G +VISM +  + D                                 
Sbjct: 718 RTARGVRGMKLGPGHKVISMLVAENEDLA------------------------------- 746

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LT +E G+GKRT   ++   NR  +G+ A   S  N  
Sbjct: 747 ---------------------VLTATENGYGKRTPISEYTRHNRGTQGMIAIITSARN-- 783

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V    V  +D+I+L++  G LIR  VNE+R  SRAT+GV + +    E++  +ER+ 
Sbjct: 784 GKVVTAKLVKPDDEIMLITSGGVLIRTRVNEVREMSRATQGVTLINLDAGEKLAGLERVV 843

Query: 899 ESEIVD 904
           ESE  D
Sbjct: 844 ESEDDD 849



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 98/216 (45%), Gaps = 14/216 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+ PLS +   R  G     + + + DF+  + +      V+ FS  G 
Sbjct: 647 FVFMATSFGTVKKTPLSEFSRPRNNG--IIAIGLDEGDFLIGVELTEGKHDVMLFSDNGK 704

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      ARG   +  + L  G ++ +++          +L V+ AT++G  
Sbjct: 705 AMRFSENDVRPMGRTARG---VRGMKLGPGHKVISMLVAEN-----EDLAVLTATENGYG 756

Query: 658 RRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  +S++ + NR  +  + +       ++++ +    +++I+L T  G  +R  ++ +R
Sbjct: 757 KRTPISEYTRHNRGTQGMIAIITSARNGKVVTAKLVKPDDEIMLITSGGVLIRTRVNEVR 816

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + R + GV  I+L  G+++  +  V+ ++ D  +
Sbjct: 817 EMS-RATQGVTLINLDAGEKLAGLERVVESEDDDGD 851


>gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D]
 gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D]
          Length = 889

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/910 (42%), Positives = 559/910 (61%), Gaps = 65/910 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +                  + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILAKPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +  QVI+M +     A    +                      
Sbjct: 719 RPM-GRQARGVRGMNLEENQQVIAMLVAPAETAGEGAQSGAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852

Query: 894 VERIRESEIV 903
           ++R+ ES+  
Sbjct: 853 LQRVMESDAE 862



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 104/249 (41%), Gaps = 13/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----FPEDESSWNNLYV 648
           S  G   +     +     QARG   +N   L + +++  ++        + +      V
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEENQQVIAMLVAPAETAGEGAQSGAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  IS+ +G+++  +  V+ +DA+  + +       A     
Sbjct: 822 IRTRVDEIREM-GRATQGVTLISVGEGNKLSGLQRVMESDAEGADAVEGADAADAAPGAD 880

Query: 766 SGDTEEITS 774
           +   +   +
Sbjct: 881 AQSDDSSET 889


>gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b]
 gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b]
          Length = 879

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/905 (45%), Positives = 582/905 (64%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 LREVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAI++AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL +++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILASAERLMEVIREELEAMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R   GR++ GVR
Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFAEAAVRAM-GRSASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +     A                                       
Sbjct: 723 GIKLAEGDKVVSLIVPREEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G +V   
Sbjct: 744 --------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 86/222 (38%), Gaps = 15/222 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  +   R  G     + +R++D +  + + +     + FS+ G V +  
Sbjct: 650 TADGTVKKTALQEFSRPRSAG--IIAINLREDDELIGVALTNGSDETMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+++ +++             ++  T++G  +R   
Sbjct: 708 EAAVRAMGRSA---SGVRGIKLAEGDKVVSLI------VPREEGAILTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVVGAVQVDDSDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           N+ GV  I  A+ + V+ +  V     + +            
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGD 859


>gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4]
 gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4]
          Length = 879

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/905 (45%), Positives = 572/905 (63%), Gaps = 69/905 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+ID P + ++ LME I GPDFPT A++ GR GI++AY TGRG  V+R  
Sbjct: 186 NLSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAAIVNGRKGIEDAYKTGRGKAVMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ+ F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 VKRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W   +++ +++ 
Sbjct: 366 VFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + I +E   L   I 
Sbjct: 426 AGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLELIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V +     RRT +    +D+  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ +IN+L L +GERIT I+P  E +    + YV+ AT HG V++  L  +
Sbjct: 606 LPLASRQARGRPIINLLPLAEGERITAILPVREYD---ADKYVIMATSHGTVKKTSLDQY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D+++ V+    +N+++L +  G+ VRF    +R   GR + GVR
Sbjct: 663 SRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVRGM-GRTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L  G  V+S+ +                                             
Sbjct: 722 GIKLEDGQSVVSLIV--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT   ++   +R+ KG+ +  VS+ N  GA+V   
Sbjct: 737 --------PKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKVSERN--GAVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V +ND+I+L+SDKGTL+R P + +    R T+GV I  TA DE VV ++RI   EI DE
Sbjct: 787 QVLENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGLQRI--DEIQDE 844

Query: 906 AESTE 910
            E  E
Sbjct: 845 QEFDE 849



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 95/253 (37%), Gaps = 15/253 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V+  +  G VK+  L  Y   R  G     V ++D D +  + I +    V+ F
Sbjct: 639 YDADKYVIMATSHGTVKKTSLDQYSRPRANG--IIAVNLKDGDQLIGVDITNGDNEVMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G V +    ++      A G   +  + L  G+               N+  ++  T
Sbjct: 697 SNEGKVVRFSEDQVRGMGRTATG---VRGIKLEDGQ------SVVSLIVPKNDGAILTVT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L ++   +R+ K  + +   +     +      + ++I+L +  G  VR P
Sbjct: 748 ENGYGKRTELDEYPAKSRATKGVVSIKVSERNGAVVGAVQVLENDEIMLISDKGTLVRTP 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +    GRN+ GV  I  A  + V+ +  +     + +        ++        + 
Sbjct: 808 ASGVSTI-GRNTQGVTIIRTATDETVVGLQRIDEIQDEQEFDEEGNPIITDTVEEQQVEG 866

Query: 770 EEITSLKNDSSVE 782
           E   +  +    E
Sbjct: 867 EAPEAEPDVEPNE 879


>gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175]
 gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183]
 gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175]
          Length = 916

 Score =  936 bits (2418), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/926 (44%), Positives = 572/926 (61%), Gaps = 88/926 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL+ + DE    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R   GR + GVRGI L +G +V+S+ +     A                   
Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIVPKGDGA------------------- 762

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                             ILTV+E G+GKRT   ++   +R+ K
Sbjct: 763 ----------------------------------ILTVTENGYGKRTQLSEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910
           A DE+VV ++RI E     DE E  E
Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 101/250 (40%), Gaps = 17/250 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+  L+ Y   R  G     V ++D D +  + I +    ++ F
Sbjct: 639 YAADKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLF 696

Query: 593 SSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641
           S+ G V +   KV     G  +   +    +LSL    R  T +                
Sbjct: 697 SNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIV 756

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ-ENDILL 698
              +  ++  T++G  +R +LS++   +R   G +++K+  R+  +         ++++L
Sbjct: 757 PKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQVGLNDELML 816

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR P   +    GRN+ GV  I  A  ++V+ +  +    +D DE       +
Sbjct: 817 ISDKGTLVRTPAGGV-SIIGRNTQGVTIIRTAGDEKVVGLQRIDEIQSDEDEVELDENGL 875

Query: 759 SAQRRLISGD 768
                +I G+
Sbjct: 876 PIVPVIIEGE 885


>gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 940

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/902 (52%), Positives = 641/902 (71%), Gaps = 9/902 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V++ +EM  SYL YA++VI+ RA+PD RDGLKPVHRRIL+GM + G   +K Y K A
Sbjct: 22  LMPVTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSA 81

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI+G+VMGKYHPHG+AAIYDAL R+AQ +SLR+ LI+GQGNFGS+DGDP AA RYTE RL
Sbjct: 82  RINGDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARL 141

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A FLL+D+ +DTVDF+PNYD S  EP VL A YPN+LVNG  GIAVGMAT IPTHN 
Sbjct: 142 ARSASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNP 201

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  +A+IDNPDI LD LM +I GPDFPTG +ILGR+GI++A+ TG+GSI +R  + 
Sbjct: 202 TEVIDATLAMIDNPDITLDELMTVIPGPDFPTGGLILGRSGIRSAFETGKGSITVRARTD 261

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+  G R+ IV++EIPYQVNKA + E++AELVR K+I  I+D+RDESDR G RVVIELK
Sbjct: 262 FEEVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELK 321

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A+ DV+LN L+R+T LQ  + +NM+AL+G +P    L  +L  F+ FRE+V++RR ++
Sbjct: 322 RDATPDVVLNHLFRFTQLQISYGINMLALDGGQPRLMGLRDVLSTFIRFREDVILRRARF 381

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LNKARDRAH+LVGLAIAVAN+DEV+R+IR SP+  +AR  LM+R W A+D+  L+ LID
Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           D    +    T+ L+EVQ R ILELRL RLTGL RD I NE+  +   I E L+I+ S  
Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           R + ++++EL  ++ EL++PRR+ I + L D +DE  I    MVVT++  G++KR PL V
Sbjct: 502 RRMEVMREELAVIRAELNSPRRSEINDSLADQDDESLIEPGQMVVTITRDGFIKRTPLDV 561

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +R Q RGG+GR+   MR +D VT  F   TH  VLFFSS G  Y++KVWRLP   P A+G
Sbjct: 562 FRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAYRQKVWRLPEAGPTAKG 621

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           +AL+N+L     + IT ++P P+DES W  L++VFAT  G +RRN+LSDF  +  SG IA
Sbjct: 622 RALVNLLPELGSDGITAVLPLPQDESLWEGLHLVFATASGGIRRNRLSDFKNVRASGLIA 681

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGVRGISLAKGD 733
           MKLD  D ++ V TC + +DI+L ++LG+C+RF      +RVFAGR S GVRG+ LA+GD
Sbjct: 682 MKLDEGDRLIGVATCREGDDIMLASRLGRCIRFQANEDTLRVFAGRESSGVRGMKLAQGD 741

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT------SLKNDSSVEGNISE 787
           +VIS++++ H +A  +ER  Y+++ SA+RR  +G+ ++I            +  +  +S 
Sbjct: 742 EVISLSVLRHVEATPEERAAYLRYASARRRSAAGEEDQIDAEVMEADDSEVTVDDTALSP 801

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           ER   L+  E+F+LTV+  GFGKR+S+YD+R+S R G+GI   +++  N   A+ A FPV
Sbjct: 802 ERIAGLEEAEEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGR-AVAATFPV 860

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              D ++LV+D G LIRVP +++RI  R+T GV +F   KDE V SV  + E+E VD+  
Sbjct: 861 RPGDDVMLVTDAGRLIRVPADQVRITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDDNG 920

Query: 908 ST 909
             
Sbjct: 921 DD 922



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 645 NLYVVFATKHGNVRRNKLSDF-IQINRSGKIA-MKL--DSRDEILSVETCTQENDILLTT 700
             +++  T  G  +R+   D+ +       IA + L   +   + +       +D++L T
Sbjct: 811 EEFLLTVTIAGFGKRSSAYDYRVSGRGGQGIANINLAPRNGRAVAATFPVRPGDDVMLVT 870

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+ +R P   +R   GR+++GV    + K + V S+  VL  ++  D          A
Sbjct: 871 DAGRLIRVPADQVR-ITGRSTMGVTLFRVDKDEVVTSVFPVLETESVDDNGDDADSVAPA 929

Query: 761 QRRLISGDTEE 771
                  D+++
Sbjct: 930 APDGQVTDSDD 940


>gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195]
 gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195]
 gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678]
          Length = 916

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/926 (44%), Positives = 572/926 (61%), Gaps = 88/926 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL+ + +E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELVQILEEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R   GR + GVRGI L +G +V+S+ +     A                   
Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIVPKGDGA------------------- 762

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                             ILTV+E G+GKRT   ++   +R+ K
Sbjct: 763 ----------------------------------ILTVTENGYGKRTQLSEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910
           A DE+VV ++RI E     DE E  E
Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 17/249 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+  L+ Y   R  G     V ++D D +  + I +    ++ F
Sbjct: 639 YAADKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLF 696

Query: 593 SSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641
           S+ G V +   KV     G  +   +    +LSL    R  T +                
Sbjct: 697 SNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIV 756

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ-ENDILL 698
              +  ++  T++G  +R +LS++   +R   G +++K+  R+  +         ++++L
Sbjct: 757 PKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQVGLNDELML 816

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR P   +    GRN+ GV  I  A  ++V+ +  +    +D DE       +
Sbjct: 817 ISDKGTLVRTPAGGV-SIIGRNTQGVTIIRTAGDEKVVGLQRIDEIQSDEDEVELDENGL 875

Query: 759 SAQRRLISG 767
                +I G
Sbjct: 876 PIVPVIIEG 884


>gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185]
 gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223]
 gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155]
 gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185]
 gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223]
          Length = 916

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/926 (44%), Positives = 572/926 (61%), Gaps = 88/926 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL+ + DE    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELVQILDEYGDARRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R   GR + GVRGI L +G +V+S+ +     A                   
Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIVPKGDGA------------------- 762

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                             ILTV+E G+GKRT   ++   +R+ K
Sbjct: 763 ----------------------------------ILTVTENGYGKRTQLSEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+++L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGLNDELMLISDKGTLVRTPAGGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE-SEIVDEAESTE 910
           A DE+VV ++RI E     DE E  E
Sbjct: 847 AGDEKVVGLQRIDEIQSDEDEVELDE 872



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 17/249 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+  L+ Y   R  G     V ++D D +  + I +    ++ F
Sbjct: 639 YAADKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLF 696

Query: 593 SSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641
           S+ G V +   KV     G  +   +    +LSL    R  T +                
Sbjct: 697 SNEGKVVRFGEKVRDSETGEVKTDPETGEEVLSLRPMGRTATGVRGIRLEEGQKVVSLIV 756

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ-ENDILL 698
              +  ++  T++G  +R +LS++   +R   G +++K+  R+  +         ++++L
Sbjct: 757 PKGDGAILTVTENGYGKRTQLSEYPAKSRATKGVVSIKVSERNGAVVGAVQVGLNDELML 816

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR P   +    GRN+ GV  I  A  ++V+ +  +    +D DE       +
Sbjct: 817 ISDKGTLVRTPAGGV-SIIGRNTQGVTIIRTAGDEKVVGLQRIDEIQSDEDEVELDENGL 875

Query: 759 SAQRRLISG 767
                +I G
Sbjct: 876 PIVPVIIEG 884


>gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 879

 Score =  935 bits (2417), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI 
Sbjct: 427 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847

Query: 906 AES 908
            + 
Sbjct: 848 LDG 850


>gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T]
 gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T]
          Length = 883

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/904 (42%), Positives = 558/904 (61%), Gaps = 67/904 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP+VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+VD C+ ++  PD D++AL++I++ PDFPT  +I G  G++  Y TGRG ++
Sbjct: 182 IPPHNLGEIVDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIYGLAGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     DR+ I+V E+PYQVNK  + E++AELV EK+I  I+++RDESD+ G 
Sbjct: 242 MRARTHFEPIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN+L+++T LQ  F +NMVAL   KP    L  +L  F+  R EV
Sbjct: 302 RLVIELKRGEMPEVVLNKLFKHTQLQDSFGMNMVALVDGKPRLLNLKQMLVCFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR H+L GLA+A++N+DE++ +I+ +P P  A+RELM R W ++ ++
Sbjct: 362 VTRRTIFELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      SY                 LSE Q +AILELRL RLTGL +D I  E   +
Sbjct: 422 EMLSRALADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYREV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  II +EL +++++   PRR+ +V    ++  ED I  EDMVV
Sbjct: 482 MDVITDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIEDLITPEDMVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY KR PL+ YRAQRRGG+G+    M+DEDF+  LF+ +TH +VL FS+ G  Y 
Sbjct: 542 TLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGRCYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P G+  +RGK ++N+  L +GE+IT ++P  E +      +V  AT  G V++ 
Sbjct: 602 LKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFD---EEHFVFMATSEGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F    ++G IA+ LD  D ++ V     + D++L +  G+ VRF  + +R   GR+
Sbjct: 659 ALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAVRFAETDVRPM-GRD 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG++L  G  VI+M +                                        
Sbjct: 718 ARGVRGMTLEDGQAVIAMLVAKD------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          + Q +LT +E G+GKRT   ++    R  KG+ A   S  N  G 
Sbjct: 741 ---------------ESQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GR 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V  +D+++L+S  G LIR  V  IR   R+T+GV + +  +   + S+E++ ES
Sbjct: 784 LVGAVLVEPSDEVMLISTGGVLIRTSVESIREMGRSTQGVTLINLDEGTFLASIEKVAES 843

Query: 901 EIVD 904
           E  +
Sbjct: 844 ESDE 847



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 93/252 (36%), Gaps = 14/252 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E  V   +  G VK+  L+ +   R+ G     +   D      +        V+ F
Sbjct: 640 FDEEHFVFMATSEGTVKKTALTAFSNPRKAGIIAVNLDDGDHLIGVAI--TDGQCDVMLF 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +  ++L  G+ +  ++   +      +  V+ AT
Sbjct: 698 SDAGKAVRFAETDVRPMGRDARG---VRGMTLEDGQAVIAMLVAKD-----ESQSVLTAT 749

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R  K  + + + D     +        ++++L +  G  +R  
Sbjct: 750 ENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGRLVGAVLVEPSDEVMLISTGGVLIRTS 809

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + +IR   GR++ GV  I+L +G  + S+  V  +++D   R         +    +   
Sbjct: 810 VESIREM-GRSTQGVTLINLDEGTFLASIEKVAESESDESMRASGEGAEGGEAEGGAQAA 868

Query: 770 EEITSLKNDSSV 781
                       
Sbjct: 869 PGEGEAPAADEE 880


>gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z]
 gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z]
          Length = 890

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/908 (46%), Positives = 578/908 (63%), Gaps = 39/908 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT VSI DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   NK 
Sbjct: 3   ELSQDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A IDN DI +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALINGRRGIEEAYKTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I      REQIVVTEIPYQVNKA ++EKI EL+REK+I  I+ + D S+++G R+
Sbjct: 243 RAKAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRL 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV 
Sbjct: 303 EIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPKLFNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++                   +G  YLSE Q RAILELRL RLTGL  + I +E   + +
Sbjct: 423 LEAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L IL+S  RL  +I++EL  VK   +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 QIGEYLHILTSIERLREVIREELELVKTNFNDARRTEITTASSDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PL+ Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y  K
Sbjct: 543 SHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYWLK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  ARG+ ++NIL L + ERIT I+P    +    + +V+ AT  G V++  L
Sbjct: 603 VYQLPEASRGARGRPIVNILPLEENERITAILPVASYD---EDKFVLMATAGGIVKKTAL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           ++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R   GR + 
Sbjct: 660 TEFSRPRSNGIIAVNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRAM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LA                                   + + EE++   +  S++
Sbjct: 719 GVRGIKLA-------------------------LTNDLSDEESAVEIEEVSEDNSQESLD 753

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +V
Sbjct: 754 LNIDKVVSLVVPKNDGEILTATQNGYGKRTKLEEYPTKSRNTKGVISIKVSERN--GKVV 811

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V + DQI+L++D GTL+R  V E+ +  R T+GV +  TA+DE+VVS+ER+ E + 
Sbjct: 812 AATQVEEADQIMLITDAGTLVRTRVTEVSVVGRNTQGVRLIRTAEDEQVVSLERVAEPDD 871

Query: 903 VDEAESTE 910
             + E  E
Sbjct: 872 EFDGEDVE 879


>gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
 gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602]
          Length = 883

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/903 (45%), Positives = 576/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKILGLKEILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  ++  
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAMLAS 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L ++I 
Sbjct: 427 AGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILS+  RL+ +I++EL +++D+ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILSNPDRLMEVIREELEAIRDQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHVFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAINLNEGDELIGVDLTDGKDEVMLFSAAGKVVRFSEEAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+S+ I                                             
Sbjct: 723 GIRLGEGDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV++ GFGKRT S ++   +R+ +G+ +  VS+ N  G ++   
Sbjct: 738 --------PRGDGCILTVTQNGFGKRTESTEYPTKSRATQGVISIKVSERN--GPVIGAI 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V++ DQI++++D GTL+R  V+E+    R T+GV +  TA DE VV ++R+ E    +E
Sbjct: 788 QVDEADQIMMITDAGTLVRTRVSEVSTVGRNTQGVTLIRTADDENVVGLQRVAEPVEDEE 847

Query: 906 AES 908
            + 
Sbjct: 848 LDG 850



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 15/249 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G V
Sbjct: 646 VFMATASGTVKKTALTDFSRPRSAGIIAINLNEGDELIGVDL--TDGKDEVMLFSAAGKV 703

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +     +      A G   I         R+              +  ++  T++G  +
Sbjct: 704 VRFSEEAVRSMGRTATGVRGI---------RLGEGDSVVSLIIPRGDGCILTVTQNGFGK 754

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R + +++   +R+ +  + +   +     +      + + I++ T  G  VR  +S +  
Sbjct: 755 RTESTEYPTKSRATQGVISIKVSERNGPVIGAIQVDEADQIMMITDAGTLVRTRVSEVST 814

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV  I  A  + V+ +  V     D +      +    +    +   ++  S 
Sbjct: 815 V-GRNTQGVTLIRTADDENVVGLQRVAEPVEDEELDGVATEAGELEAAQAADLPDDAESE 873

Query: 776 KNDSSVEGN 784
            +  + +  
Sbjct: 874 DDQPADDEE 882


>gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 871

 Score =  935 bits (2416), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/919 (45%), Positives = 573/919 (62%), Gaps = 68/919 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  I       K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MSKGYIQIMVYLAKEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 61  SELSNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  
Sbjct: 121 DGDAPAAMRYTEVRMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   
Sbjct: 181 GIAVGMATNIPPHNLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEG 240

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TG+G +VIR  + IE   S  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ L
Sbjct: 241 YRTGKGRVVIRARTEIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGL 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+QG RVVIELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+
Sbjct: 301 RDESDKQGMRVVIELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILE 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R EVV RRT + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ 
Sbjct: 361 YFIKHRREVVTRRTIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLS 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471
           + W    +K +++    ++             +    LSE Q +AILELRL RLT L +D
Sbjct: 421 KIWQPGLVKAMLEKAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQD 480

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I NE   L   IKE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED
Sbjct: 481 KIINEFEELLNLIKELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIED 540

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVT+SH GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L 
Sbjct: 541 LITEEDVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLC 600

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G +Y  K ++LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  A
Sbjct: 601 FSNHGKLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMA 657

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G V++  L+ F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S
Sbjct: 658 TKKGTVKKVPLNAFSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDES 717

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRGI + K   V S+ +V                              
Sbjct: 718 KVRPM-GRTARGVRGIRVEKDQAVKSLVVVDP---------------------------- 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ILT +E G+GKRT   ++R+S R G+G+ +  
Sbjct: 749 ------------------------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQ 784

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V++ N  G +V    V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E V
Sbjct: 785 VTERN--GKVVRSLQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEAV 842

Query: 892 VSVERIRE-SEIVDEAEST 909
           V +++I +  E ++EAE +
Sbjct: 843 VGMQKIVDLGEELEEAEDS 861


>gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
 gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter
           piechaudii ATCC 43553]
          Length = 891

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/921 (41%), Positives = 550/921 (59%), Gaps = 78/921 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP   +D L+EII  PDFPTG +I G +G++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIYGMSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IV+  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   D                  + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 DMLSRADGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II  EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE+IT ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFS---EDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDSGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GRN+ GVRG+ L +   VI++ +                             
Sbjct: 719 ENDVRPM-GRNARGVRGMMLEETQTVIALLV----------------------------- 748

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 749 -----------------------AGDETQTVLTATENGYGKRTPIGEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +  N  G +V    VN  D+I+L++  G L+R  V EIR   RAT+GV + +     
Sbjct: 786 IQTTSRN--GKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGS 843

Query: 890 RVVSVERIRESEIVDEAESTE 910
            +  V R+ ES+  D+ E  E
Sbjct: 844 TLSGVRRVVESDADDDGELDE 864



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 136/408 (33%), Gaps = 27/408 (6%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    S+I+     +D       +D  + L
Sbjct: 495 LLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDLITPTDMVVTL 554

Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           S     + Q  +    +     G     ++       + I    D L   S    +   +
Sbjct: 555 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLCFSNRGRVYWLK 614

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556
           +  V       R   IV      + E             +  V   +  G VK+ PLS +
Sbjct: 615 VWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 674

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R+ G     +   D D++    +      V+ FS  G   +     +      ARG 
Sbjct: 675 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDSGKAVRFDENDVRPMGRNARG- 731

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
             +  + L + + +  ++   +         V+ AT++G  +R  + ++ +  R  K  +
Sbjct: 732 --VRGMMLEETQTVIALLVAGD-----ETQTVLTATENGYGKRTPIGEYTRHGRGTKGMI 784

Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +       +++        ++I+L T  G  VR  ++ IR   GR + GV  I++  G 
Sbjct: 785 AIQTTSRNGKVVGAVLVNPTDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLINVDDGS 843

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            +  +  V+ +DAD D  +         +     DT         +  
Sbjct: 844 TLSGVRRVVESDADDDGELDEDVQAEDGQAQGGDDTNGAADSTEPTEQ 891


>gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J]
 gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J]
          Length = 889

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/917 (42%), Positives = 566/917 (61%), Gaps = 66/917 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TV+F PNYDGS  EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NP+  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLRNPEATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++   +                  + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLVRAESETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTAIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  AT 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +  QVI+M +                                 
Sbjct: 719 RPM-GRQARGVRGMNLEETQQVIAMLVAP------------------------------- 746

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                       +E   +  +     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 747 ------------AETEGEGAQSVAGSVLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  
Sbjct: 795 ERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLISVGEGNKLSG 852

Query: 894 VERIRESEIVDEAESTE 910
           ++R+ ES+  + AES E
Sbjct: 853 LQRVMESDA-EGAESIE 868



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 13/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 647 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---- 648
           S  G   +     +     QARG   +N   L + +++  ++  P +        V    
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEETQQVIAMLVAPAETEGEGAQSVAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  IS+ +G+++  +  V+ +DA+  E I       A     
Sbjct: 822 IRTRVDEIREM-GRATQGVTLISVGEGNKLSGLQRVMESDAEGAESIEGADAADAAPDAD 880

Query: 766 SGDTEEITS 774
           +   +   +
Sbjct: 881 AQADDSSET 889


>gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
 gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541]
          Length = 874

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/909 (45%), Positives = 577/909 (63%), Gaps = 68/909 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK 
Sbjct: 9   EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RY
Sbjct: 69  YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH +L DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 129 TEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I
Sbjct: 189 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 248

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R
Sbjct: 249 RARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV
Sbjct: 309 IVIEIKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ RSW    +  
Sbjct: 369 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRSWALGTVAA 428

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             +G  +L+E Q +AIL+LRL +LTGL  + +  E   L 
Sbjct: 429 MLERAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRDLL 488

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I+E L IL S  RL+ +I++EL ++++  +  RRT I E   D+  ED I +ED+VVT
Sbjct: 489 KQIEELLFILRSPDRLMEVIREELEAIRNVYNDARRTEITENTADINIEDLINQEDVVVT 548

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  
Sbjct: 549 LSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWM 608

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E E      YV  AT  G V++  
Sbjct: 609 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYE---EGYYVFMATASGTVKKTP 665

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L DF +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR +
Sbjct: 666 LQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTA 724

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L   D+V+S+ I                                         
Sbjct: 725 TGVRGIKLMDDDKVVSLII----------------------------------------- 743

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +
Sbjct: 744 ------------PRGEGHILTVTENGYGKRTEEAEYPTKSRATQGVISIKVSERN--GHV 789

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V D DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E+E
Sbjct: 790 VGAIQVEDTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAETE 849

Query: 902 IVDEAESTE 910
             D   + +
Sbjct: 850 DDDNDSNDQ 858



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 141/420 (33%), Gaps = 35/420 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +  +   +L      +  + E +  IR   N   ARR  +  +   
Sbjct: 476 EHEKLLEEYRDLLKQIEELLFILRSPDRLMEVIREELEAIRNVYN--DARRTEITENTAD 533

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  LS+ + +       +       D I   L +   
Sbjct: 534 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTH 593

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+            
Sbjct: 594 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVRE-------Y 646

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+ PL  +   R  G     +   DE    DL   +    V+ FS
Sbjct: 647 EEGYYVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDL--TNGSNEVMLFS 704

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V +     +      A G   I ++  ++                    +++  T+
Sbjct: 705 AQGKVVRFAEDAVRAMGRTATGVRGIKLMDDDK---------VVSLIIPRGEGHILTVTE 755

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R + +++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 756 NGYGKRTEEAEYPTKSRATQGVISIKVSERNGHVVGAIQVEDTDQIMMITDAGTLVRTRV 815

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ ++V+ +  V   + D ++               + + E
Sbjct: 816 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAETEDDDNDSNDQEDADDVNVDNETNNEE 874


>gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8]
 gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8]
          Length = 862

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/909 (42%), Positives = 565/909 (62%), Gaps = 67/909 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  ++NK
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D C +++ NP+  ++ L+E++  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVLDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H E    G R+ I++ E+PYQVNK  ++EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHFEDMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   DV+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 302 RVVIELKRGEIPDVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE++ II+ +P P  A+++LM +SW +  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 422 EMLKRAAMEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL++ +R+  II  EL  ++ +    RR+ IVE   D+  ED I  +D+VV
Sbjct: 482 MDVIADLLDILATAARVTAIITDELTEIRRQFGDKRRSEIVENAQDLSLEDLIAPQDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+K  PL  YRAQ+RGG+G+     +++DF+  +F+ +TH  +L FS+ G VY 
Sbjct: 542 TLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L + E+I  I+     +    N ++  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRTSRGKPIVNLFPLEENEKINAILSVKSFD---ENHFIFMATSLGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F    RSG IA+ LD  D ++  E     ND++L +  G+ V F    +R   GR 
Sbjct: 659 ALTEFANPRRSGIIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQM-GRA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ LA+  QV+S+ I  +                                     
Sbjct: 718 TRGVRGMKLAEDQQVLSLLIASN------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           +Q ++  +E G+GKRT   DFR S R  +G++A  VS+ N  G 
Sbjct: 741 ---------------DQQTVMVATENGYGKRTVLADFRRSGRGTQGVKAIAVSERN--GL 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+D D+I+L++  G LIR  V+EIR   RAT+GV + +  + E++  +E+I E+
Sbjct: 784 VVAAKLVSDEDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLGEGEKLSGIEKIVET 843

Query: 901 EIVDEAEST 909
           +  ++ E+ 
Sbjct: 844 DDEEDGETE 852



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 101/234 (43%), Gaps = 14/234 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +   + LG VK+  L+ +   RR G     + + + D++    I +    V+
Sbjct: 638 KSFDENHFIFMATSLGTVKKTALTEFANPRRSG--IIAINLDEGDYLIGAEITNGSNDVV 695

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G         +       RG   +  + L + +++ +++    D+ +     V+ 
Sbjct: 696 LVSNGGKAVWFDEDEVRQMGRATRG---VRGMKLAEDQQVLSLLIASNDQQT-----VMV 747

Query: 651 ATKHGNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVR 707
           AT++G  +R  L+DF +      G  A+ +  R+ ++   +  + E++I+L T  G  +R
Sbjct: 748 ATENGYGKRTVLADFRRSGRGTQGVKAIAVSERNGLVVAAKLVSDEDEIMLITTGGVLIR 807

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             +S IR   GR + GV  I+L +G+++  +  ++  D + D        +  +
Sbjct: 808 TRVSEIREL-GRATQGVTLINLGEGEKLSGIEKIVETDDEEDGETEADNEVGGE 860


>gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591]
 gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591]
          Length = 877

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LSEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGKRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLYSQTQMQVSFGINMVALHQGQPKLMTLKEILAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +IR +  P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L++ Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL+++++  +  RRT I     D+  ED I  E++VVT+SH 
Sbjct: 487 ELLFILRSPERLMEVIREELVAIRELYNDARRTEITHNSADINIEDLISEENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L Q ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEQDERITAILPVREYEEGMN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAEGKVVRFSESAVRTM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ +                                             
Sbjct: 723 GINLQDDDRVVSLIVPRGEGD--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ GFGKRT+  ++ + +R+ KG+ +  VS+ N  G +V   
Sbjct: 744 --------------ILTVTQNGFGKRTAVTEYPVKSRATKGVISIKVSERN--GNVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DERVV ++R+ E    DE
Sbjct: 788 QVDSADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDE 847

Query: 906 AES 908
            +S
Sbjct: 848 LDS 850



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 86/245 (35%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      A G   IN+   ++                     ++  T++G  
Sbjct: 703 VVRFSESAVRTMGRTATGVRGINLQDDDR---------VVSLIVPRGEGDILTVTQNGFG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S + 
Sbjct: 754 KRTAVTEYPVKSRATKGVISIKVSERNGNVVGAVQVDSADQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ ++V+ +  V     D +               I     +  +
Sbjct: 813 SIVGRNTQGVTLIRTAEDERVVGLQRVAEPVEDDELDSVVPVDGELPEEDIDEPESDDDT 872

Query: 775 LKNDS 779
            ++D 
Sbjct: 873 PEDDE 877


>gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
 gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1]
          Length = 898

 Score =  934 bits (2415), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/924 (41%), Positives = 558/924 (60%), Gaps = 69/924 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQPKLCNLKDLIQVFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+  LM++SW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAALMEKSWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +  +G   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL +VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKKGERRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   E+ S   + Y
Sbjct: 602 LLCFSNRGRMYWLKVWEVPSGSRGSRGRPIVNMFPLQDGEKINVVLPLTGENRSFPEDHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALTEFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG+++ +   VI+M +    D   +                  
Sbjct: 722 FDENDVRPM-GRNARGVRGMNIEEHQNVIAMLVAEADDGTGNVV---------------- 764

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 765 ---------------------------AGSQSVLTATENGYGKRTAISEYTRHGRGTKGM 797

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V   D+I+L++D G L+R  V EIR   RAT+GV + +   
Sbjct: 798 IAIQQSERN--GKVVAATLVAPEDEIMLITDTGVLVRTRVAEIRELGRATQGVTLINLDA 855

Query: 888 DERVVSVERIRESEIVDEA-ESTE 910
             +++ ++RI E++  D A E  E
Sbjct: 856 GAKLIGLQRIVENDANDGAGEDGE 879



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 102/249 (40%), Gaps = 13/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L+ +   R+ G     V + + D++    +      V+ F
Sbjct: 656 FPEDHYVFMATSMGTVKKTALTEFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN----NLYV 648
           S  G   +     +      ARG   +N   + + + +  ++    D+ + N    +  V
Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMN---IEEHQNVIAMLVAEADDGTGNVVAGSQSV 770

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 771 LTATENGYGKRTAISEYTRHGRGTKGMIAIQQSERNGKVVAATLVAPEDEIMLITDTGVL 830

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  ++ IR   GR + GV  I+L  G ++I +  ++  DA+           S      
Sbjct: 831 VRTRVAEIREL-GRATQGVTLINLDAGAKLIGLQRIVENDANDGAGEDGEAEDSGGAAAE 889

Query: 766 SGDTEEITS 774
                   S
Sbjct: 890 GPAESGDAS 898


>gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1]
 gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32]
 gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200]
          Length = 917

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/914 (44%), Positives = 567/914 (62%), Gaps = 87/914 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---ADKYIIMATSNGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFGEKVRDSETGEVKTDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 ++R   GR + GVRGI L +G +V+S+ +                         
Sbjct: 723 TGEEVLSLRPM-GRTATGVRGIRLEEGQKVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  ILTV+E G+GKRT   ++   +R+ K
Sbjct: 757 ----------------------------PKGDGAILTVTENGYGKRTQLSEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V  ND+I+L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGSNDEIMLISDKGTLVRTPAKGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRE 899
           A DE+VV ++RI E
Sbjct: 847 ASDEKVVGLQRIDE 860



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 59/229 (25%)

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D++I+    +L   A     +   + +    +    +          + +  N  +  
Sbjct: 469 EHDKIIAEYEELLEFIAGLLFILRSPERLMEVIKEELEEILTEYGDARRTVINANEIDMS 528

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV------- 842
            ++L  +E  ++T+S  G+ K     D++   R GKG  AT V   + +  L+       
Sbjct: 529 LEDLINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDT 588

Query: 843 -------------------------------------------AVFPVND---NDQIILV 856
                                                      A+ PV +   +  II+ 
Sbjct: 589 ILCFSDFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERITAILPVREYAADKYIIMA 648

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +  GT+ +  +       R   G++  +    ++++ V+    +   DE
Sbjct: 649 TSNGTVKKTALTAYS-NPR-ANGIIAVNLKDGDQLIGVDI---TNGDDE 692


>gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 879

 Score =  934 bits (2414), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/903 (45%), Positives = 573/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847

Query: 906 AES 908
            + 
Sbjct: 848 LDG 850


>gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 872

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/906 (43%), Positives = 550/906 (60%), Gaps = 68/906 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   K    VS+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK
Sbjct: 2   EAFAKETLPVSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP+V+ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMARIGHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D C+A+++N ++ +D L++++ GPDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLGEIIDACLALLNNAEVTIDELIDLVPGPDFPTAGIIYGVAGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +RG +H E        + I++ E+PYQVNK  +LEKI ELV EKRI  I+DLRDESD+ G
Sbjct: 242 MRGRTHFEDMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRG  A+V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R E
Sbjct: 302 MRVVIELKRGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT + L KAR+RAH+  GLA+A+ N+DE++ +I+ SP P  ARR LM R W +  +
Sbjct: 362 VLTRRTVFELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTV 421

Query: 428 KDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +++      +      G           LSE Q +AILELRL RLTGL RD I  +   
Sbjct: 422 AEMLQRAALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I + +DIL+   R+  +I +EL +++ +    RR+ IV    D+  ED I   DMV
Sbjct: 482 LLARIADLMDILARPERITEMIVEELTAIRAQFGDKRRSEIVISTQDLGIEDFITPVDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K  PL+ YRAQRRGG+G+    M+ +DFV  LF+ +TH  +L F++ G VY
Sbjct: 542 VTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRVY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G+  +RGK ++N+    +GE+I+ I+P  E     ++ Y+   T  G V++
Sbjct: 602 WLKVYEVPQGTRTSRGKPIVNLFPFEEGEKISAILPVKEFT---DDRYIFMCTAQGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LSDF    ++G IA+ LD  D ++  E      D++L +  G+ V F    +R   GR
Sbjct: 659 TPLSDFSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRPM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ LA   QV+S+ +  +                                    
Sbjct: 718 TARGVRGMRLADQQQVLSLLVADN------------------------------------ 741

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +Q +L  +E GFGKRT   DFR S R  +G+ A   S+ N  G
Sbjct: 742 ----------------DQQTVLVATENGFGKRTVLADFRHSGRGTQGVIAIAGSERN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V D D+I+L++  G LIR  V EIR   RAT+GV + +    E++  +E+I E
Sbjct: 784 RVVAARLVRDEDEIMLITTGGVLIRTRVREIRELGRATQGVTLIALDAGEKLAGLEKIVE 843

Query: 900 SEIVDE 905
           +E   E
Sbjct: 844 TEDDAE 849



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 14/243 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PLS +   R+ G     V + DED +    I +    V+  
Sbjct: 641 FTDDRYIFMCTAQGTVKKTPLSDFSNPRKAG--IIAVALDDEDVLIGAEITNGTQDVVLV 698

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G         +      ARG   +  + L   +++ +++    D+ +     V+ AT
Sbjct: 699 SDAGKAVWFDEEDVRPMGRTARG---VRGMRLADQQQVLSLLVADNDQQT-----VLVAT 750

Query: 653 KHGNVRRNKLSDFIQ--INRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  L+DF        G IA+        +++      E++I+L T  G  +R  
Sbjct: 751 ENGFGKRTVLADFRHSGRGTQGVIAIAGSERNGRVVAARLVRDEDEIMLITTGGVLIRTR 810

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  IR   GR + GV  I+L  G+++  +  ++  + D +      +           D 
Sbjct: 811 VREIREL-GRATQGVTLIALDAGEKLAGLEKIVETEDDAEIADLVEQPGEPAAGGQYADP 869

Query: 770 EEI 772
            E 
Sbjct: 870 GEE 872


>gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
 gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5]
          Length = 906

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/889 (50%), Positives = 628/889 (70%), Gaps = 8/889 (0%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K
Sbjct: 4   DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA R
Sbjct: 64  PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATN
Sbjct: 124 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI+
Sbjct: 184 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE    +R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R
Sbjct: 244 MRGRAEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+
Sbjct: 304 IFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVI 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RT YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +P  A++ELM   W A +I  
Sbjct: 364 TNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILP 423

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+ L+DD +  +   G    +EVQ +AILE+RL RLT + ++ +  +L +L  EI E L+
Sbjct: 424 LVKLVDDKAM-LNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLN 482

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+RLL I+K EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+K
Sbjct: 483 ILGSRTRLLEILKAELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIK 542

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RVPLS YRAQ+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ 
Sbjct: 543 RVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLS 602

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +PQ +G+ ++NIL L   E IT IMP PE++   +NL ++FAT  GN+RR+ L  F ++ 
Sbjct: 603 NPQGKGRPMVNILPLKANEYITNIMPLPENQDERDNLNIMFATAKGNIRRSDLLAFKKLQ 662

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIA++LD  D+++ V+ C ++  ILL TK G+ +RF + ++RV   R S GVRG+ L
Sbjct: 663 SNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESLRVIKSRTSDGVRGMKL 722

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D VISM ++    +  ++R  Y+     QR  I+          N   +  +++   
Sbjct: 723 AKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGE-----AFNPEELGVSLTAPA 777

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  
Sbjct: 778 ILEMAKSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKM 835

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +D+++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I 
Sbjct: 836 DDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIA 884


>gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
 gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002]
          Length = 861

 Score =  934 bits (2413), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/902 (43%), Positives = 563/902 (62%), Gaps = 68/902 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D+   K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +W
Sbjct: 2   TDQFFAKETIPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR  LI+GQGNFGSVDGD  AA
Sbjct: 62  NRAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + AH LL D+ K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMA
Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DGC+AV+ + DI +D L++II  PDFPT  +I G  G+K  Y TGRG 
Sbjct: 182 TNIPPHNLNEVIDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGTAGVKEGYRTGRGR 241

Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +++R  +H E    GDR+ I+V E+PYQVNKA +LE+I ELVR+K+I  I+DLRDESD+ 
Sbjct: 242 VIMRARTHFEDIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKS 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  IL+ F+  R 
Sbjct: 302 GMRVVIELKRGEMPEVVLNHLYKLTQLQDSFGINMVALVDGQPRLLNLKQILEEFLRHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S  P  A+  LM+R W +  
Sbjct: 362 EVVTRRTIFELRKARERGHILEGLAVALSNVDEIIALIKASETPPVAKIALMEREWRSPL 421

Query: 427 IKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++++  +D                +    LSEVQ +AILELRL RLTGL +D I  E  
Sbjct: 422 VEEMLARVDQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYR 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +   I + +DIL+   R+  II  EL ++K +    RR+ I     D+  ED I  +DM
Sbjct: 482 EIMEVILDLIDILARPERINQIISDELNAIKTQFGDARRSEIEPFGGDINIEDLITPQDM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTVSH GY+K  P+  YR+QRRGG+G+     +D+DF+  LF+ +TH  VL FSS G  
Sbjct: 542 VVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFGRC 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ LP G   +RGK ++N+L L +GE+I  ++P  E     ++ +V   T +G V+
Sbjct: 602 YWIKVYDLPQGGRNSRGKPIVNVLPLAEGEKINAMLPVKEFR---DDQFVFMCTANGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L DF +   +G IA+ LD  D ++ V     ++ ++L +  G+ VRF  + +R   G
Sbjct: 659 KTPLVDFSRPRTAGIIAVNLDEGDNLIGVALTHGDDQVMLFSDAGKAVRFSETDVRAM-G 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L +G QVIS+ +                                      
Sbjct: 718 RNATGVRGMMLGEGQQVISLLVTCS----------------------------------- 742

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            ++Q +LT S+ G+GKRT + +FR ++R  +G+ A D++  ++ 
Sbjct: 743 -----------------EDQMVLTASDGGYGKRTRAGEFRHTSRGTQGVIAMDLT--DKT 783

Query: 839 G-ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G  LVA   V + D ++L++  G LIR  V+E+R   R+ +GV + +  + E+++S+ ++
Sbjct: 784 GLKLVAASLVEETDDVMLITTGGVLIRTKVSEVRETGRSAQGVRLINLDEGEKLISLVKV 843

Query: 898 RE 899
            E
Sbjct: 844 AE 845


>gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 879

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/903 (45%), Positives = 575/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR +P+P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHIFMATASGTVKKTSLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVNEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEE 847

Query: 906 AES 908
            + 
Sbjct: 848 LDG 850


>gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
 gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford]
          Length = 898

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/899 (50%), Positives = 638/899 (70%), Gaps = 9/899 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y 
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG++AIYD+L RMAQ +SLRL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP 
Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG
Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ I
Sbjct: 246 RAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  R
Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLLNKARD+AH+L+GL IAV+N+DE++RII+ + +   A++ELM RSW A  I  L+ 
Sbjct: 366 TIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLVK 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+DD +  +        +E+Q +AILE+RL RLT + ++ +  EL +L  EI E ++IL 
Sbjct: 426 LVDDKAM-LNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILG 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I RE+MVVTV+  GY+KRVP
Sbjct: 485 SRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ
Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQ 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ ++NIL L + E IT IMP PE++  W+NL ++FAT  GN+RR+ L DF +I  SG
Sbjct: 605 GKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSSG 664

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++RV   R S GVRG+ LAK 
Sbjct: 665 KIAIRLDDDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTSDGVRGMKLAKE 724

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM ++   ++  ++R  Y     A+R  I+   E      N   +   ++ +   +
Sbjct: 725 DSVISMTVLKGINSTKEDRDAYFTVPWAKRLEIAKGEE-----FNLEELGVTLTADSILK 779

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKIDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAESTE 910
           ++L+++ G LIR  +  +RI  R T GV++F     E+VVSV  I E SE  +++E  E
Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAETSESAEDSELEE 896


>gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
 gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS]
          Length = 872

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/922 (44%), Positives = 567/922 (61%), Gaps = 76/922 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K   S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M   WN+
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A  +L D+ K+T+DF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+ G + ++ +PD  +D L++II  PDFPTG +I G TG++  Y TGRG +V
Sbjct: 182 IPPHNLAEVIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIYGVTGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R+ I++ E+PYQVNK  +LE+IAE VREK++  I+D+RDESD+ G 
Sbjct: 242 MRARTHFEEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR   A+V+LN L++ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  AR+ELM RSW++S ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIARQELMARSWDSSLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            +++   +                 Y I SDG   LSE Q   IL++RL RLTGL +D I
Sbjct: 422 SMLERTGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
            NE   +  +I E LDIL+   R+L II  EL +V  E        RR+ I     D+E 
Sbjct: 482 LNEYGDVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDTRRSEIELNASDLET 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  PLS YRAQ+RGG+GR     +++D+V  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS  G +Y  KVW +P GS  +RGK ++N+  L   E+IT I+P   E+ +   N Y+
Sbjct: 602 LCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGEEKITVILPLSGENRNFPENHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  L+DF    ++G IA+ LD  D ++        +D++L +  G+ VRF
Sbjct: 662 FMATSQGTVKKTPLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGNHDVMLFSDAGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GV+G++L    +VI++ +                            
Sbjct: 722 DENDVRPM-GRTARGVKGMNLEDEQKVIALLVAGD------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      + Q +LT +E GFGKRT   ++    R  KG+ 
Sbjct: 756 ---------------------------ENQSVLTATENGFGKRTPIAEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V++ND+I+L++  G LIR  V+EIR   RAT+GV + S  + 
Sbjct: 789 AIQTSERN--GKVVAATLVSENDEIMLITTGGVLIRTRVSEIREMGRATQGVTLISIEEG 846

Query: 889 ERVVSVERIRESEIVDEAESTE 910
             +  ++RI ES+I D  E +E
Sbjct: 847 TTLSGLQRILESDIEDVPEGSE 868


>gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103]
 gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103]
 gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355]
          Length = 880

 Score =  933 bits (2412), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR   
Sbjct: 187 LREVINGCLAYIEDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATASGTVKKTGLQEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D+V+S+ +     A                                       
Sbjct: 723 GIKLAQNDRVVSLIVPREEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 744 --------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D+DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 86/222 (38%), Gaps = 15/222 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  +   R  G     + +RD+D +  + + + +   + FS+ G V +  
Sbjct: 650 TASGTVKKTGLQEFSRPRSAG--IIAINLRDDDELIGVALTNGNDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L Q +R+ +++             ++  T++G  +R   
Sbjct: 708 ESAVRAMGRTA---SGVRGIKLAQNDRVVSLI------VPREEGAILTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAGTLVRTRVSEV-SIVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           N+ GV  I  A+ + V+ +  V     + +            
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGD 859


>gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 893

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/916 (43%), Positives = 570/916 (62%), Gaps = 78/916 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A I N DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVINGCLAYISNEDITIDELMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIA+LV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            +R A A+V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CRRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GL++A+AN+DE++ +IR +P P  A+  L+ R W+   +  +++ 
Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL RLTGL    I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILS+  RL+ +I++EL   +D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELIHILSNTERLMEVIREELEMARDNFGDARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L+ Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714
             +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF               +R
Sbjct: 663 SNVRANGLIAVNLRDDDSLIGVEITDGESDIMLFSKSGKVVRFNEKPIVDDEGNVKGGVR 722

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRG+ L KGDQV+S+ +                                  
Sbjct: 723 PM-GRTASGVRGMKLVKGDQVVSLIV---------------------------------- 747

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 +  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+
Sbjct: 748 -------------------PKTDGDILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSE 788

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +V     ++ D+ +++++  TL+R  V+E+    R T+GV +  T++ E+VV +
Sbjct: 789 RN--GKVVGAVQADEGDEFMMITNAATLVRTRVSEVSQVGRNTQGVTLIRTSEGEKVVGL 846

Query: 895 ERIRESEIVDEAESTE 910
           +RI E +  D  +  +
Sbjct: 847 QRIEELDEADLPQDDD 862



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/439 (14%), Positives = 151/439 (34%), Gaps = 38/439 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
               ++   K LL++  +  H+L      +  + E +       N   ARR  +  + + 
Sbjct: 469 EHGKILDEYKALLDEIAELIHILSNTERLMEVIREELE--MARDNFGDARRTEITAASHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  L++ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQVLTDYEAQRRGG------------KGKSATRMKDE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     V +RD+D +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFSNVRANG--LIAVNLRDDDSLIGVEITDGESD 692

Query: 589 VLFFSSLGFVYKEKVWRL--PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
           ++ FS  G V +     +    G+ +   + +    S  +G ++              + 
Sbjct: 693 IMLFSKSGKVVRFNEKPIVDDEGNVKGGVRPMGRTASGVRGMKLVKGDQVVSLIVPKTDG 752

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703
            ++  T++G  +R +LS++   +R+ +  + +       +++      + ++ ++ T   
Sbjct: 753 DILTVTENGYGKRTQLSEYPAKSRATQGVVSIKVSERNGKVVGAVQADEGDEFMMITNAA 812

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VR  +S +    GRN+ GV  I  ++G++V+ +  +   D     +   +        
Sbjct: 813 TLVRTRVSEV-SQVGRNTQGVTLIRTSEGEKVVGLQRIEELDEADLPQDDDVSSEDQSSV 871

Query: 764 LISGDTEEITSLKNDSSVE 782
             +  +  I +   D + +
Sbjct: 872 ESTSTSTVIDTDSTDVNTD 890


>gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 884

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/922 (42%), Positives = 568/922 (61%), Gaps = 76/922 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+
Sbjct: 2   DQFAKETIPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGSVDGD  AA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A+ +L D+ KDTVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG + V+ N D  +D L+EII  PDFPT  +I G +G+++ Y TGRG IV
Sbjct: 182 IPPHNITEVIDGALHVLRNADCTIDELIEIIPAPDFPTAGIIYGVSGVRDGYRTGRGRIV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRAEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L +AR+R HVL GLA+A+AN+D+ + II+ +P P  A+ ELM R+W++S ++
Sbjct: 362 VTRRTIFELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    + +               Y I  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLVRTGEEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
            NE   +  +I + LDILS   R+  II  EL + K E        RR+ I     D+  
Sbjct: 482 VNEYKEVMAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERRSYIEHNATDLGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P+S YR+Q+RGG+G+  +  +D+D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE++T I+P   ++ S   + Y+
Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLLDGEKVTVILPVSGDNRSFPEDRYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             +T  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMSTSLGTVKKTPLSDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDSGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +G QVI++ +  +                         
Sbjct: 722 DENDVRPM-GRTARGVRGMNLEEGQQVIALLVAEN------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      ++Q +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 756 ---------------------------EQQSVLTATENGYGKRTPITEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V  +D+I+L++  G LIR  V EIR   RAT+GV + +    
Sbjct: 789 AIQTSERN--GRVVAATLVEPSDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDG 846

Query: 889 ERVVSVERIRESEIVDEAESTE 910
            ++  ++RI E ++ +  ++ +
Sbjct: 847 TKLSGLQRIVEPDVEEGDDAVD 868



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 97/239 (40%), Gaps = 14/239 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   + LG VK+ PLS +   R+ G     +   + DF+    +      V+ F
Sbjct: 655 FPEDRYIFMSTSLGTVKKTPLSDFSNPRKAGIIAVDLD--EGDFLIGAALTDGQHDVMLF 712

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +N   L +G+++  ++             V+ AT
Sbjct: 713 SDSGKAVRFDENDVRPMGRTARGVRGMN---LEEGQQVIALLVAEN-----EQQSVLTAT 764

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++       +++       ++I+L T  G  +R  
Sbjct: 765 ENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGRVVAATLVEPSDEIMLITTGGVLIRTR 824

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           ++ IR   GR + GV  I++  G ++  +  ++  D +  +         A     + D
Sbjct: 825 VAEIREM-GRATQGVTLIAVEDGTKLSGLQRIVEPDVEEGDDAVDATDAPADDTPAADD 882


>gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
 gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36]
          Length = 918

 Score =  933 bits (2411), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/923 (52%), Positives = 631/923 (68%), Gaps = 19/923 (2%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + ++E   T       SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENDDEIPATRPVYDGPSVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+   K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+G
Sbjct: 61  RRIIYSMYEKGITHEKAYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A F+  DL K+TVDF  NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSAAAMRYTESRLDKVASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IV+ EI YQVNK+ M+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 DGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRKFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A  I   I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+IL SR R++GII  EL  VKD+   PRRT IV+   DM+DED I
Sbjct: 481 TDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  ++ED VT LF+ +THT +LFF+
Sbjct: 541 AREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP G   ++GKA++NIL +  G  I  IMP   DE  W++L VVFAT 
Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINARIASNDDDVMLVTNSGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R SVGVRGI L   D+V+SM+I+ H DA  +ER  Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRASVGVRGIKLNGDDEVVSMSIIRHFDASSEERTAYLK----MRRAMAGLAD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +    ++++  + N S+ER  E+   E  +LT++EKG GK +SS+D+ +  R G G+ A 
Sbjct: 777 DAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGAGKLSSSHDYPVRGRGGLGVTAM 836

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F T + E 
Sbjct: 837 D--KAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFDTGRGEV 894

Query: 891 VVSVERIR---ESEIVDEAESTE 910
           VVSV  I    +    DE  + E
Sbjct: 895 VVSVAWIADQGDETGDDEIATPE 917


>gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
 gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53]
          Length = 908

 Score =  933 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/914 (51%), Positives = 630/914 (68%), Gaps = 15/914 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + +++  +T       SV+I  E++ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENDDDLPVTRMAHAGPSVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYGMYEAGNTHDKSYRKSARSVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K A ++L D+ KDTVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDRAAAMRYTEVRMDKPAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+IDNPD+  + ++E I  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IV+ EIPYQVNK+ M+++IAE  R+KRI
Sbjct: 241 RSGARKAYLEGRGSVIVRAKTVVEEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ T
Sbjct: 301 EGIAHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L AFV FREEV+ RRT + L KAR+RAH+L GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRAFLVAFVDFREEVIARRTAFELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM R W A+ I + I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 RHTLMTRRWPAAAILEYIKLIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E L+IL SR R+L II+ EL  V+D+   PRRT+IV+   DM+DED I
Sbjct: 481 TDELQELAGKIREYLEILGSRDRILQIIRDELTEVRDQFAVPRRTQIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            +EDMVVTV+  GY+KR  L+ +RAQRRGGKG S +  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EQEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP+GS  A+GKA++NIL + QG  +  IMP    E+ W++L +VFAT 
Sbjct: 601 TDGMAYKLKTWRLPLGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISA 712
            G+VRRN LSDF  +  +GKIAMKL      +++   C+ ++D++L T  G+ +RFP + 
Sbjct: 661 AGDVRRNALSDFTNVKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF GR+S GVRGI L   D+V+SM+I+ H +A+ +ER  Y+K   A   L      + 
Sbjct: 721 VRVFKGRDSTGVRGIRLQGDDKVVSMSIIRHFEAEAEERAAYLKMRRAMAGLA-----DD 775

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             ++++ +  G IS ER   +   E  ILT+S KG GK +SS+D+ +  R G G+ A D 
Sbjct: 776 AEVEDEEAAPGQISPERYAAMSAAENLILTISAKGSGKLSSSHDYPVRGRGGMGVAAMD- 834

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K    G LV  FPV  +DQI+LV+  G  IRVPV  I   SR+  GV +F T K E VV
Sbjct: 835 -KAMRGGPLVTSFPVEMSDQIMLVTSTGQSIRVPVEGISFRSRSAGGVKVFDTGKGETVV 893

Query: 893 SVERIRESEIVDEA 906
           SV  I +    ++ 
Sbjct: 894 SVAWIADQGDDEDD 907


>gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 900

 Score =  933 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/921 (43%), Positives = 570/921 (61%), Gaps = 62/921 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLRKIAHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+  C+ V+ NP+  +D L+EII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLDEVISACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEDLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+DE + II+ + NP  A++ELM ++W++S ++
Sbjct: 362 VTRRTIFELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  Y + + G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528
            NE   +  EI + LD+L+   R+  +I+ EL  V+ E      DT RR+ I     ++ 
Sbjct: 482 VNEYKEVMSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRRSFIEMNATELF 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +DMVVT+S+ GY+K  PLS YRAQ+RGG+G+     ++ED++  LF+ +TH  
Sbjct: 542 TEDLITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDI 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS  G +Y  KVW +P GS  +RGK ++N+  L +GE+IT I+P        ++ YV
Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGY---QDDHYV 658

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++ +LSDF    ++G IA+ L+  D ++       ++D++L +  G+ VRF
Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L  G QVI+M +     A+  E      + +A        
Sbjct: 719 DENDVRPM-GRTARGVRGMNLGDGHQVIAMLVAPAEAAEGAEAAVVDANGAAIPSS---- 773

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 774 -------------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   ++ N  G +VA   V+  DQI+L++  G L+R  V+EIR   RAT+GV + +  + 
Sbjct: 803 AIQTTERN--GKVVAAALVSPEDQIMLITTGGILVRTRVSEIREMGRATQGVTLINVDEG 860

Query: 889 ERVVSVERIRESEIVDEAEST 909
            R+  ++RI ES+  DE +  
Sbjct: 861 TRLSGLQRIAESDSDDETDEE 881



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+  LS +   R+ G     V + + DF+    I      V+ F
Sbjct: 652 YQDDHYVFMATSLGTVKKTRLSDFSNPRKAG--IIAVDLNENDFLVGAAITDGQHDVMLF 709

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN---------ILSLNQGERITTIMPFPEDESSW 643
           S  G   +     +      ARG   +N         +L               +   + 
Sbjct: 710 SDAGKAVRFDENDVRPMGRTARGVRGMNLGDGHQVIAMLVAPAEAAEGAEAAVVDANGAA 769

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700
               V+ AT++G  +R  ++++ +  R   G IA++      ++++    + E+ I+L T
Sbjct: 770 IPSSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTTERNGKVVAAALVSPEDQIMLIT 829

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  VR  +S IR   GR + GV  I++ +G ++  +  +  +D+D +           
Sbjct: 830 TGGILVRTRVSEIREM-GRATQGVTLINVDEGTRLSGLQRIAESDSDDETDEEGDASAEP 888

Query: 761 QRRLISGDTEEI 772
                S    + 
Sbjct: 889 ADDTNSDVAGDA 900


>gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 878

 Score =  933 bits (2410), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + NE   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/432 (14%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR     +       + + N+
Sbjct: 470 EHEKLLNEYKELLEQIAELLHILGSADRLMEVIREEMELIRD----QFGDERRTEITANS 525

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +DI     +  +      S         L++ + +       +       D I   L + 
Sbjct: 526 ADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585

Query: 481 GIE---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
             +             + +        G   + ++++       R T I+      E  +
Sbjct: 586 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN 645

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                  V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ 
Sbjct: 646 -------VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVML 696

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G V + K   +      A G   +  + L   +++ +++             ++  
Sbjct: 697 FSAAGKVVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTV 747

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R    ++   +R+ +  + +        ++        + I++ T  G  VR 
Sbjct: 748 TQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRT 807

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +S I    GRN+ GV  I  A+ + V+ +  V     D +              +    
Sbjct: 808 RVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEA 866

Query: 769 TEEITSLKNDSS 780
             +     +   
Sbjct: 867 ESDDDVADDADE 878


>gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 913

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/888 (55%), Positives = 648/888 (72%), Gaps = 5/888 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I++++I DE++ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KC
Sbjct: 5   DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+G++HPHG+A++Y AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE +
Sbjct: 65  ARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +  AA  LL D+ KDTVDF+PNYD    EPVVL AR PN+LVNG GGIAVGMATNIP HN
Sbjct: 125 MAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  VA++D+PD+  DAL++I+ GPDFPTG  I+GRT  +NA   GRGS+++RG +
Sbjct: 185 LREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIMGRTAPRNALRDGRGSVIVRGKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+   DR+ I++TE+P+QVNK  ++E+IAE+VREKR+  IAD+RDESDR G R+VIEL
Sbjct: 245 SIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR AS DVILNQLYRYT+LQS F VNM+ALN  +PE+  L  +L+ F+ FREEVVVRR K
Sbjct: 305 KRDASGDVILNQLYRYTALQSSFGVNMLALNHGRPEQMGLRKLLELFLDFREEVVVRRVK 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDR HVLVGLA+AVAN+DEV+ IIR S +P  AR  L  ++W   D+  L++LI
Sbjct: 365 FELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALVELI 424

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D    +     + L++ Q RAIL L L+RLTGLGRDDI  E  +L   I+  L ILS R
Sbjct: 425 ADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTILSDR 484

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L II+++LL VKD+    RRT I EG  +MEDED I REDMVVTV+H GYVKRV L+
Sbjct: 485 KNVLAIIREDLLLVKDQFGVDRRTLIGEGDAEMEDEDLIPREDMVVTVTHSGYVKRVALN 544

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKGRSG+ M+DED VT +F  STHT VLFF++ G  YK K WRLP+G+PQ+R
Sbjct: 545 AYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKTWRLPLGNPQSR 604

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA +N+L +  G+ I  ++P PEDE++W +  ++FAT+ G+VRRNKLSDF  +NR+GKI
Sbjct: 605 GKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRNKLSDFATVNRAGKI 664

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AMKL+  D ++ V  CT E+D+LLTT LG+ +RF    +RVF GR+S GVRGI L  GD 
Sbjct: 665 AMKLEDGDGMVGVGLCTAEDDVLLTTALGRAIRFKADDVRVFKGRDSTGVRGIRLQDGDT 724

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----SLKNDSSVEGNISEERC 790
           VISMAI+   DA  +ER  Y+KH +A R+ ++G   E         ++ + +  +S ER 
Sbjct: 725 VISMAILGRVDATPEERAAYVKHANAMRKALAGADAEEDVVTVEADDEEAGDAALSVERI 784

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            EL   EQFILTV+E GFGKR+S+Y++R + R G+G+ A  +        L A FPV ++
Sbjct: 785 AELGAAEQFILTVTETGFGKRSSAYEYRRTGRGGQGLTAHGLGGRAGT-RLAAAFPVEES 843

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D ++LV+D G +IR PV+++RI  R+++GV IF T KDE+VVSVER+ 
Sbjct: 844 DDLMLVTDGGQMIRTPVSQVRIVGRSSQGVTIFRTGKDEKVVSVERLA 891


>gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163]
 gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163]
          Length = 879

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/903 (45%), Positives = 572/903 (63%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ DI L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 LTEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 723 GINLQGEDRVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 738 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847

Query: 906 AES 908
            + 
Sbjct: 848 LDG 850


>gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 878

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 87/246 (35%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
           + +   
Sbjct: 873 VDDADE 878


>gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A
 gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 878

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193]
 gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193]
          Length = 915

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/915 (51%), Positives = 636/915 (69%), Gaps = 17/915 (1%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MT+   + +  +E           +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MTDTPETPENADENFPQRATYDGPTVSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K A F+L+D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNAAAMRYTEVRMDKPAAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+I++PD+  + L++ + GPDFPTGA++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGAIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  + +E+   DR  IVV E+PYQVNKAAM+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+AV N+DE+V  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A  I   I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAQPILQYIALIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+ILSSR R++GII  EL  V+D+   PRRT IV+   DM+DED I
Sbjct: 481 TDELEELAGKIKEYLEILSSRERIMGIICDELREVRDQFAVPRRTEIVDWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL  +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP  S   +GKA++NIL +  G  I  IMP    +  W +L +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQSSRTGKGKAIVNILPIPVGVSIAAIMPVDRPDDEWADLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN+LSDF  +  +GKIAMK +      ++++   C++++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNRLSDFTNVKSNGKIAMKFEEDHADTKLINARICSEDDDVMLVTSTGRAIRFPT 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  RNSVGVRGI L++G +V+SM+++ H DA+  ER  ++K   ++      + +
Sbjct: 721 TDVRVFNSRNSVGVRGIKLSEGAEVVSMSVIRHFDAEPWERSAFIKRFRSELGSDVSE-D 779

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +  +   +   EG +SEER QE+      ++T+++ G G  TS++D+R+S R G+G+ A 
Sbjct: 780 DAVAEVAEEIEEGALSEERYQEMLAANDLLVTINKPGAGNLTSAHDYRVSGRGGQGVGAM 839

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                   G +VA FPV   DQI+L + KG  IRVPV+ I   SR+  GV +F+T K E 
Sbjct: 840 K------GGEIVATFPVELGDQIMLATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGEE 893

Query: 891 VVSVERIRESEIVDE 905
           VVSV  I ES   DE
Sbjct: 894 VVSVAWIAESGEDDE 908


>gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3]
 gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 897

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/925 (44%), Positives = 564/925 (60%), Gaps = 87/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+I++P + ++ LME I GPDFPT A++ GR GI +AY TGRG  V+R  
Sbjct: 186 NLTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAAIVNGRKGIIDAYKTGRGRAVMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+ + W    +K +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   +L+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L ILSS  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLLILSSPQRLMEVITEELHEVLENFGDKRRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L++GERIT I+P  E     ++ Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSEGERITAILPVREYA---DDKYIIMATSHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF   A             
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARNAETGEVKIDPE 722

Query: 713 -------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                  +R   GR + GVRGI L  G  V+S+ +                         
Sbjct: 723 TGEEVIALRAM-GRTATGVRGIKLEDGQTVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                         ++  ILTV+E G+GKRT+  ++   +R  K
Sbjct: 757 ----------------------------PKEDGAILTVTENGYGKRTALSEYPAKSRGTK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V DND+I+L+SDKGTL+R P   +    R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGDNDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
           A+DE+VV ++RI E +  +     E
Sbjct: 847 AEDEKVVGLQRIDEIQDEEVELDEE 871



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 92/248 (37%), Gaps = 17/248 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+  L+ Y   R  G     V ++D D +  + I   +  ++ F
Sbjct: 639 YADDKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGNDDIMLF 696

Query: 593 SSLGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIM---------PFPEDES 641
           S+ G V +          G  +   +    +++L    R  T +                
Sbjct: 697 SNEGKVVRFNEKARNAETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIV 756

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILL 698
              +  ++  T++G  +R  LS++   +R  K  + +   +     +        ++I+L
Sbjct: 757 PKEDGAILTVTENGYGKRTALSEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGDNDEIML 816

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR P + +    GRN+ GV  I  A+ ++V+ +  +     +  E       +
Sbjct: 817 ISDKGTLVRTPATGVSSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQDEEVELDEEGNPI 875

Query: 759 SAQRRLIS 766
            ++     
Sbjct: 876 VSEETTEE 883


>gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
 gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134]
          Length = 883

 Score =  932 bits (2409), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/910 (41%), Positives = 556/910 (61%), Gaps = 65/910 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRARTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAEADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +   I + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYRDVMAIIADLLDILARPERITTIISDELTAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSDGEKINVILPVRQFD---AEHFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +   VI+M +     A+  E                       
Sbjct: 719 RPM-GRQARGVRGMNLDESQTVIAMLVAPAETAEQTEAGSPGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V+ +D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GRVVAAALVSPDDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 852

Query: 894 VERIRESEIV 903
           ++RI E++  
Sbjct: 853 LQRIVETDAD 862



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 13/220 (5%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +   +  G VK+  L+ +   R+ G     +   + D++    +      V+ FS  
Sbjct: 650 EHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLD--EGDYLIGAAVTDGQHDVMLFSDA 707

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----PFPEDESSWNNLYVVFA 651
           G   +     +     QARG   +N   L++ + +  ++       E   + +   V+ A
Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMN---LDESQTVIAMLVAPAETAEQTEAGSPGSVLTA 764

Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R  ++++ +  R   G IA++       +++    + +++I+L T  G  +R 
Sbjct: 765 TENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPDDEIMLITTGGVLIRT 824

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
            ++ IR   GR + GV  I++ +G ++  +  ++  DAD 
Sbjct: 825 RVAEIREM-GRATQGVTLINVDEGTKLSGLQRIVETDADN 863


>gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
          Length = 878

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAENDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472]
 gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472]
          Length = 866

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/920 (42%), Positives = 566/920 (61%), Gaps = 74/920 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+++ + +         +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDNLFAKET------LPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + R+AQD+SLR  L++GQGNFGSV
Sbjct: 55  HELSNDWNRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + AH LL D+ K+TVDF PNYDGS  EP++L A+ PN+LVNG  
Sbjct: 115 DGDNAAAMRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD C+A++ N D+ +D L++II  PDFPT  +I G  G+K  
Sbjct: 175 GIAVGMATNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGTAGVKEG 234

Query: 241 YATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG +++R  +H E    GDRE I+V EIPYQVNKA +LE+I+ELVR+K+I  I+DL
Sbjct: 235 YRTGRGRVIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDL 294

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIELKRG   +V+LN L++ T LQ  F +NMVAL   +P    L  IL+
Sbjct: 295 RDESDKSGMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQPRLLNLKQILE 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R EVV RRT + L KAR+R H+L GLA+A++N+DE++ +I+ S  P  A+  LM 
Sbjct: 355 EFLRHRREVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMA 414

Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           R+W +S ++D++  ++                +   +LS+ Q +AIL++RL RLTGL +D
Sbjct: 415 RAWRSSLVEDMLSRVEGDKARPENIDPAFGMKEDGYHLSDTQAQAILDMRLQRLTGLEQD 474

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +   I + LDIL+   R+  II +EL +++ +   PRR+ I     D+  ED
Sbjct: 475 KIVGEYREIMDVILDLLDILAKPERISQIIGEELTAIRAQFGDPRRSEIEPYGGDINIED 534

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GY+K  P+  Y +QRRGG+G+     +D+DF+  LF+ +TH  VL 
Sbjct: 535 LITPQDMVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLC 594

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G  Y  KV+ LP G  Q+RGK ++N+L L +GE+I  ++P  E     ++ +V   
Sbjct: 595 FSSRGRCYWRKVYDLPQGGRQSRGKPMVNVLPLEEGEKINALLPVKEFR---DDQFVFMC 651

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T +G V++  L DF +   +G IA+ LD  D ++ V     ++ I+L +  G+ VRF  +
Sbjct: 652 TANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGVALTHGDDQIMLFSDAGKAVRFSET 711

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GRN+ GVRG+ L    QVIS+ +                               
Sbjct: 712 DVRPM-GRNATGVRGMMLGDDHQVISLLV------------------------------- 739

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT S+ G+GKRT   DFR ++R  +G+ A D
Sbjct: 740 ---------------------SNSEQQMVLTASDGGYGKRTCVGDFRRTSRGTQGVIAMD 778

Query: 832 VSKINEIG-ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           ++  ++ G  LVA   V + D I+L++  G LIR  V E+R   R+ +GV + +  + E+
Sbjct: 779 LT--DKTGLKLVAASLVEETDDIMLITTGGVLIRTKVAEVRETGRSAQGVRLINLDEGEK 836

Query: 891 VVSVERIRESEIVDEAESTE 910
           ++ +E + ESE       TE
Sbjct: 837 LIGLEIVAESEAECAEGETE 856



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 94/236 (39%), Gaps = 15/236 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL  +   R  G     +   D      L        ++ F
Sbjct: 642 FRDDQFVFMCTANGTVKKTPLVDFSRPRTAGIIAVNLDDGDNLIGVAL--THGDDQIMLF 699

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      A G   +  + L    ++ +++      S+     V+ A+
Sbjct: 700 SDAGKAVRFSETDVRPMGRNATG---VRGMMLGDDHQVISLL-----VSNSEQQMVLTAS 751

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI----LSVETCTQENDILLTTKLGQCVRF 708
             G  +R  + DF + +R  +  + +D  D+     ++     + +DI+L T  G  +R 
Sbjct: 752 DGGYGKRTCVGDFRRTSRGTQGVIAMDLTDKTGLKLVAASLVEETDDIMLITTGGVLIRT 811

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            ++ +R   GR++ GVR I+L +G+++I + IV  ++A+  E          Q   
Sbjct: 812 KVAEVRE-TGRSAQGVRLINLDEGEKLIGLEIVAESEAECAEGETEGGDAPEQGEA 866


>gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby]
 gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila str. Corby]
 gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 863

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/894 (45%), Positives = 563/894 (62%), Gaps = 67/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LLI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D PD  L+ LMEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAIINGRAGIIEGYRTGKGRVVIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE   +  R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADV+LN L+ +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ + W    +K +++
Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               ++             +    LSE Q +AILELRL RLT L +D I NE   L   I
Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDERRTEITASQEDLTIEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y+AQRRGGKG+S   ++DEDFV  L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  +RG+ +INIL L +GE I  ++P  E +   +  YV  ATK G V++  L+ 
Sbjct: 606 QLPQASRTSRGRPIINILPLAEGEEINAMLPVREYK---DGSYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRFDESKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + K   V S+ +V                                           
Sbjct: 722 RGIRVEKDQAVKSLVVVDP----------------------------------------- 740

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 741 -----------SGGTILTATENGYGKRTHIDEYRVSGRGGQGVISIQVTERN--GKVVRS 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V DND+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E VV +++I 
Sbjct: 788 LQVTDNDEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGETVVGMQKIV 841


>gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19]
          Length = 935

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 498/902 (55%), Positives = 660/902 (73%), Gaps = 8/902 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  +SI  E++ SYL YA++VI+ RA+PD RDGLKPVHRRI++ M + G   +KKYVK
Sbjct: 29  QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I G+VMG+YHPHG++AIYDAL RMAQ +S+ LLL++GQGNFGSVDGDPPAA RYTE 
Sbjct: 89  SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ KAA  L+ D+ K T+DF  NYDGS +EP VL +R PN+LVNG GGIAVGMATNIP H
Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VD C+AV+D+P + ++ L+ I+ GPD+PTG  ILGR+G + A  TGRGS+V RG 
Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEILGRSGARLALMTGRGSVVTRGK 268

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE    DRE IV+TEIPYQVNK++M+E IAELVR+KRI  I+D+RDESDRQG RVV+E
Sbjct: 269 ASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVVE 328

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR AS DVILNQLYR+TSLQ+ F VNM+AL+  +P++  L  +L  F+ FRE+VVVRR 
Sbjct: 329 LKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGRPQQMGLRRLLDIFLDFREDVVVRRI 388

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKARDR HVLVG+ IAVAN+DEV+ IIR S +P  AR  L  ++W + D+  LIDL
Sbjct: 389 RFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLIDL 448

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I D    +     + L++ Q RAIL L L+RLTGLGRD+I +E  +L   I   L+ILSS
Sbjct: 449 IADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEILSS 508

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R++ I+++EL+ VK +   PRRT+I E   D+EDED I REDMVVTV+H GYVKR PL
Sbjct: 509 RERIMAIVREELVEVKAQFAVPRRTQIAESEGDIEDEDLIPREDMVVTVTHSGYVKRTPL 568

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S+YR Q RGGKGRSG+ M+DED +  ++  STH  +LFFSS G  +K KVWRLP+G+PQ+
Sbjct: 569 SMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKVWRLPVGNPQS 628

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA +N+L +  G+ I+ I+  PE+E+ W+ L ++FAT+ G++RRNKLSDF+ +NR+GK
Sbjct: 629 KGKAFVNLLPIEPGDNISNILALPEEEAGWDKLDIIFATRSGDIRRNKLSDFVNVNRAGK 688

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAMKL+  D I+ V  C+ + D+LL+T  G+ +RF +  +RVF GR+S GVRG+ L   D
Sbjct: 689 IAMKLEEGDAIVGVAVCSDDQDVLLSTSGGRAIRFAVDEVRVFKGRDSTGVRGVRLLGDD 748

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE-----ITSLKNDSSVEGNISEE 788
           +VISMAI+  +DA   ER  Y+K  SA+R  + G  ++     +     ++S    +++E
Sbjct: 749 KVISMAILKRSDAIAAERAAYLKRASAERTALIGSADDEAPAVVEDDSEETSDIAELTDE 808

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  ELK +E+FILT+S+ GFGKR+SS++FR + R G+GI A D+SK    G L A FP+ 
Sbjct: 809 RYAELKNQEEFILTISDVGFGKRSSSFEFRRTGRGGQGIVAMDMSKR--GGKLAACFPIE 866

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             D I+LV+  G LIR  V ++RIA R T+GV IF TA  ERVVSVER+ +S   DEA +
Sbjct: 867 ATDGILLVTQGGQLIRTSVRQVRIAGRNTQGVTIFRTAGGERVVSVERLPDS-GEDEAGT 925

Query: 909 TE 910
            E
Sbjct: 926 DE 927


>gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 905

 Score =  932 bits (2408), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/896 (50%), Positives = 635/896 (70%), Gaps = 8/896 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y 
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEVMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +H L++D+ K+TV F PNYDGS +EP VL A +PN+LVNG GGIAVGMATNIP 
Sbjct: 126 SRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG
Sbjct: 186 HNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ I
Sbjct: 246 RAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  R
Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLLNKARDRAH+L+GL IAV+N+DE++RII+ S +   A++ELM R W A +I  L+ 
Sbjct: 366 TIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLVK 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+DD +  +   G    +EVQ +AILE+RL RLT + ++    +L +L  EI E L+IL 
Sbjct: 426 LVDDKAM-LNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILG 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+RLL I+K+EL+ VK+E  TPR T I  G  D + ED I  E+MVVTV+  GY+KRVP
Sbjct: 485 SRTRLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIEDLIQHEEMVVTVTLGGYIKRVP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ
Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQ 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ ++NIL L + E IT IMP PE++  WNNL ++FAT  GN+RR+ L DF +I  +G
Sbjct: 605 GKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLDFKKIQSNG 664

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA++LD  D+++ V+ C ++  ILL TK+G+ +RFP+ ++RV   R S GVRG+ LA+ 
Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESLRVIKSRTSDGVRGMKLARE 724

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM ++    +  ++R  Y+     +R  I+          N   +   ++ +   E
Sbjct: 725 DSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGE-----AFNPEELGVALTADSILE 779

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+FILTV+E GFGK++S+Y +RI++R G GI   D++  ++ G +V V PV  +++
Sbjct: 780 MANFEEFILTVTENGFGKKSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDNE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++L+++ G LIR  +  +RI  R T GV++F   + E+VVSV  I ES   +E  +
Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDEGEKVVSVSLIAESTEGEEDSA 893


>gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
 gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032]
          Length = 878

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 573/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMALKEILAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+S+ +     A                                       
Sbjct: 723 GIRLGEGDSVVSLIVPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V+  N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 139/430 (32%), Gaps = 35/430 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   +    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGVDL--TAGKDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         R+                 ++ AT+
Sbjct: 699 AQGKVVRFKEDAVRPMGRTATGVRGI---------RLGEGDSVVSLIVPRGEGAILTATQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+ K  + +   D     +        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDEIAPETDV 868

Query: 771 EITSLKNDSS 780
           +  +  +   
Sbjct: 869 DDDAADDADE 878


>gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894]
          Length = 878

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/905 (44%), Positives = 573/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+  TL  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMTLKEILAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+    +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVRPM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+S+ +     A                                       
Sbjct: 723 GIRLGEGDSVVSLIVPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V+  N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTDRN--GPVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 71/430 (16%), Positives = 140/430 (32%), Gaps = 35/430 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   +    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRTAGIIAVNLNEGDELIGVDL--TAGKDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         R+                 ++ AT+
Sbjct: 699 AQGKVVRFKEDAVRPMGRTATGVRGI---------RLGEGDSVVSLIVPRGEGAILTATQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+ K  + +   D     +        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAVEEYPTKSRATKGVISIKVTDRNGPVVGAVQVDDADQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDDIAPETDA 868

Query: 771 EITSLKNDSS 780
           +  ++ +   
Sbjct: 869 DDDAVDDADE 878


>gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC]
 gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601]
 gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC]
 gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601]
          Length = 896

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/924 (41%), Positives = 560/924 (60%), Gaps = 78/924 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 19  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 78

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 79  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 138

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 139 YTEIRLAKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATN 198

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 199 IPPHNLNEVVDACLHLLRNPESSIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGKVV 258

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 259 MRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 318

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 319 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKELIEVFLQHRREV 378

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  ++
Sbjct: 379 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 438

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++    +                  + +   G   LS+ Q + IL++RL RLTGL +D 
Sbjct: 439 EMLTRTREDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDK 498

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I+  LDIL+  +R+  II +EL +++ E        RR+ I     D+ 
Sbjct: 499 IVAEYKDVMAVIENLLDILAKPARVSTIIGEELSALRQEFGQTRLGARRSTIEHSAQDLS 558

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 559 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 618

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   E  S   + Y
Sbjct: 619 ILCFSNRGRLYWLKVWEVPAGSRNSRGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRY 678

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    ++G IA+ LD  D ++       E+D++L +  G+ VR
Sbjct: 679 VFMATSMGTVKKTALDEFSNPRKAGIIAVGLDEGDYLIGAALTDGEHDVMLFSDSGKAVR 738

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GV+G+ L  G  VI+M +                           
Sbjct: 739 FDENDVRPM-GRNARGVKGMQLEDGQSVIAMLVAED------------------------ 773

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 774 ----------------------------ENQSVLTATENGYGKRTSITEYTRHGRGTKGM 805

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 806 IAIQQSERN--GRVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 863

Query: 888 DERVVSVERIRESE-IVDEAESTE 910
             ++  ++RI E++    EA+  +
Sbjct: 864 GAKLSGLQRIVENDANTAEADGAD 887



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/232 (21%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+ G     V + + D++    +      V+ F
Sbjct: 673 FPADRYVFMATSMGTVKKTALDEFSNPRKAG--IIAVGLDEGDYLIGAALTDGEHDVMLF 730

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   + +    +  +    M   ED     N  V+ AT
Sbjct: 731 SDSGKAVRFDENDVRPMGRNARGVKGMQL----EDGQSVIAMLVAED----ENQSVLTAT 782

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++       +++      +++I+L T  G  VR  
Sbjct: 783 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGRVVAATLVHADDEIMLITDTGVLVRTR 842

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           +S IR   GR + GV  ISL +G ++  +  ++  DA+  E        +A 
Sbjct: 843 VSEIREL-GRATQGVTLISLDEGAKLSGLQRIVENDANTAEADGADTAPAAD 893


>gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
 gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a]
          Length = 904

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/905 (44%), Positives = 560/905 (61%), Gaps = 35/905 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   L+E+Q   ILE+RL RLTGL +D + +E   L  
Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL+SVK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVSVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  +     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYA---DGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     + DILL    G+ VRF    +R   GR + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A                      G  +E           
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESA---------------------GGIEDENEDDSGVEEAA 757

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            N             Q+ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 758 ANGDAVIEGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +  +D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSSDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAE 907
            DE E
Sbjct: 876 EDEDE 880



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 62/268 (23%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+R  +S +    R G+          D I  +      + +L  T  G+ 
Sbjct: 539 VVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKV 598

Query: 706 VRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
              P+  +   AG N+ G   I+   L  G++V ++  V                     
Sbjct: 599 FWLPVYQL-PEAGSNARGRPIINWIPLEPGERVQAVLPVRD------------------- 638

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                              QF+   ++ G  K+T   +F    R
Sbjct: 639 -------------------------------YADGQFVFFATKNGTVKKTPLGEFAF--R 665

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             +G  A ++ +     ALV V   +    I+L +  G  +R   +++R   R   GV  
Sbjct: 666 LARGKIAINLDEG---DALVGVGLTDGQRDILLFASNGKTVRFGEDKVRSMGRTATGVRG 722

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
                 E VVS+  + ES    E E+ +
Sbjct: 723 IKMPAGEEVVSL-IVAESAGGIEDENED 749



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 100/272 (36%), Gaps = 35/272 (12%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VK+ PL  +  +   GK    + + + D +  + +      +L F
Sbjct: 639 YADGQFVFFATKNGTVKKTPLGEFAFRLARGKI--AINLDEGDALVGVGLTDGQRDILLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM------------------ 634
           +S G   +    ++      A G   +  + +  GE + +++                  
Sbjct: 697 ASNGKTVRFGEDKVRSMGRTATG---VRGIKMPAGEEVVSLIVAESAGGIEDENEDDSGV 753

Query: 635 --------PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDE 683
                      E     +  Y++ AT++G  +R  L D+ +  R  +  + +       +
Sbjct: 754 EEAAANGDAVIEGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGK 813

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++       +++LL +  G  VR   S I    GRN+ GV  I L+K +++ ++  +  
Sbjct: 814 LVAAVLMGSSDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKDEKLQAVERMDA 872

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           +  + ++ +      +      +  +E+    
Sbjct: 873 SIDEDEDEVAAAAPATTDGAPAAASSEDAAQE 904


>gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 892

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/922 (41%), Positives = 562/922 (60%), Gaps = 69/922 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF  NYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W+++ ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKAWDSALVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAEGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  EI + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYRDIMAEIADLLDILARPERITTIIIDELTAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L++GE+I  I+P  + +      ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVRQFD---AEHFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +G  VI+M +     A+                          
Sbjct: 719 RPM-GRQARGVRGMNLEEGQAVIAMLVAPAETAEEAADAGVRGS---------------- 761

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 762 --------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 795

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  
Sbjct: 796 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 853

Query: 894 VERIRESEIV-----DEAESTE 910
           ++RI ES+       +E E  +
Sbjct: 854 LQRIVESDADNGGNGEEPEEAD 875



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 96/230 (41%), Gaps = 8/230 (3%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +   +  G VK+  L+ +   R+ G     +   + D++    +      V+ FS  
Sbjct: 650 EHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLD--EGDYLIGAAVTDGQHDVMLFSDA 707

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATK 653
           G   +     +     QARG   +N+        +        +E++       V+ AT+
Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMNLEEGQAVIAMLVAPAETAEEAADAGVRGSVLTATE 767

Query: 654 HGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  ++++ +  R   G IA++       +++    + E++I+L T  G  +R  +
Sbjct: 768 NGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRTRV 827

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           + IR   GR + GV  I++ +G ++  +  ++ +DAD        +    
Sbjct: 828 AEIREM-GRATQGVTLINVDEGTKLSGLQRIVESDADNGGNGEEPEEADG 876


>gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114]
 gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114]
          Length = 905

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 474/895 (52%), Positives = 621/895 (69%), Gaps = 8/895 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SVSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G   +K Y K AR 
Sbjct: 12  SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K
Sbjct: 72  VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A +LL D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGE
Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  +A+I+ PD+  + L++ + GPDFPTG ++LGR G + AY  GRGS++IR  + +E
Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLGRGGARKAYLEGRGSVIIRAKTRVE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  I+V EIPYQVNKA M+EKIAE VREK+I  IA ++DESDR G RVVIELKR 
Sbjct: 252 EIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+V++NQLYR+T LQ+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT YLL
Sbjct: 312 ATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLTLRKFLTYFIDFREDVVARRTAYLL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R+HVL GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD 
Sbjct: 372 RKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALIDDP 431

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++T   DGT  LSE Q RAIL+LRL RLT +G  ++ +EL  L  +IKE L+IL SR R+
Sbjct: 432 THTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSRDRI 491

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +GII  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +R
Sbjct: 492 MGIIADELREVRELFAVPRRTEIVDWSGDMEDEDLIAREDMVVTVTQGGYIKRTPLADFR 551

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +QRRGGKG SG  ++++D VT LF+ +THT +LFF++ G  YK K WRLP G+  ++GKA
Sbjct: 552 SQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGARTSKGKA 611

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL + QG  I  I+P   DE  W+ L +VFAT  G VRRN LSDF  +  +GKIAMK
Sbjct: 612 IVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFTNVKSNGKIAMK 671

Query: 678 LDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +       +++    + ++D++L T  G+ +RFP   +RVF  R+SVGVRG+ L+  D+
Sbjct: 672 FEDEHAETTLINARIASPDDDVMLVTASGRAIRFPSEDVRVFNSRSSVGVRGVKLSGHDK 731

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+SM+++ H DA  DER  Y+K    +R ++    +  TS ++++S    IS +R  E+ 
Sbjct: 732 VVSMSVIRHFDATADERAAYLK---MRRAMVGLTDDSETSDEDETSANATISPDRYAEMS 788

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  ILT++  G GK +SS+D+ +  R G G+ A D  K  + G +VA FPV  +DQI+
Sbjct: 789 AAENLILTLTAGGAGKLSSSHDYPVRGRGGMGVTAWD--KRMQTGQIVASFPVEMDDQIM 846

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           L + KG  IRVPV  I   SR+  GV +F+T K E VVSV  I +    D     
Sbjct: 847 LATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEEVVSVAWIADQGEDDTDGED 901


>gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
 gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB]
          Length = 879

 Score =  931 bits (2407), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/910 (43%), Positives = 564/910 (61%), Gaps = 68/910 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H +L+DL K+TVDF PNYDGS  EP+V+ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIGHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+ GC+A+++NP + ++ L+  I  PDFPT  +I G TG++  Y TGRG ++
Sbjct: 182 IPPHNLNEVIAGCLALLENPALSIEDLIAYIPAPDFPTAGLIYGMTGVREGYQTGRGRVI 241

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +H E    S  R+ ++V EIPYQVNK +++EKIAELV EK+I  I+D+RDESD+ G
Sbjct: 242 MRARTHFEDMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+ F++ R E
Sbjct: 302 MRIVIELKRGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQPRLLNLKQMLECFLSHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W ++ +
Sbjct: 362 VITRRTVYELRKARERGHILEGLAVALSNVDEIITLIKAAPTPADAKRGLMERTWRSAVV 421

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++      +            S     LS+ Q +AILELRL RLTGL +D I  E   
Sbjct: 422 EEMLVRAASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKD 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I + LDIL+   R+  II  EL++++++    RR+ I+    ++  ED I  +DMV
Sbjct: 482 VMAKILDLLDILAKPERITEIIVTELVAIREQFGDERRSEIILQTHELSLEDLITPQDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K  PL+ YRAQRRGG+G+    ++DEDFV  LF+ +TH  +L FS+ G  Y
Sbjct: 542 VTLSHGGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRGRCY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+  P GS  +RGK ++N+  L +GERI  ++P  E     ++ ++  AT+ G V++
Sbjct: 602 WLKVYEAPQGSRVSRGKPIVNLFPLEEGERINAVLPVKEFA---DDKFIFMATRAGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LSDF    ++G IA+ L   D ++ VE  T ++DI+L +  G+ V F    +R   GR
Sbjct: 659 TPLSDFSNPRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDVRPM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ L  G  VIS+ +                                       
Sbjct: 718 GARGVRGMKLQAGQAVISLLVAES------------------------------------ 741

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +Q +L  +E GFGKRT   DFR S R  +G++A   S+ N  G
Sbjct: 742 ----------------DQQTVLVATENGFGKRTVLADFRHSGRGTQGVKAIADSERN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++    V+DND+++L++  G LIR  V+EIR   RAT+GV + S    E++  +E++ E
Sbjct: 784 VVIGAKLVDDNDEVMLITTGGVLIRTRVSEIRGMGRATQGVTLISLDDGEKLAGLEKVAE 843

Query: 900 SEIVDEAEST 909
           S    E E  
Sbjct: 844 SVAEAEVEGE 853



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 99/250 (39%), Gaps = 16/250 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PLS +   R+ G     ++  D+D++  + + +  + ++  
Sbjct: 641 FADDKFIFMATRAGTVKKTPLSDFSNPRKAGIIAVDLL--DDDYLIGVELTTGQSDIVLV 698

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G         +      ARG   + +    Q  +    +   E     +   V+ AT
Sbjct: 699 SNAGKAVWFDEEDVRPMGRGARGVRGMKL----QAGQAVISLLVAE----SDQQTVLVAT 750

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI----LSVETCTQENDILLTTKLGQCVRF 708
           ++G  +R  L+DF + +  G   +K  +  E     +  +     ++++L T  G  +R 
Sbjct: 751 ENGFGKRTVLADF-RHSGRGTQGVKAIADSERNGVVIGAKLVDDNDEVMLITTGGVLIRT 809

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +S IR   GR + GV  ISL  G+++  +  V  + A+ +                  +
Sbjct: 810 RVSEIRGM-GRATQGVTLISLDDGEKLAGLEKVAESVAEAEVEGESEVVAPETGDAAPSE 868

Query: 769 TEEITSLKND 778
            +  ++   +
Sbjct: 869 GDVASNEGGE 878


>gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
 gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2]
          Length = 879

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIREQFGDARRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ +                                             
Sbjct: 723 GIKLAEKDSVVSLIV--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVEDTDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 139/431 (32%), Gaps = 35/431 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR       ARR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIR--EQFGDARRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI   D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAEKDSVVSLIVPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSAAEGDEDIAPEAES 868

Query: 771 EITSLKNDSSV 781
           +  +  +D+  
Sbjct: 869 DDDAAADDADE 879


>gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3]
 gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3]
          Length = 904

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/905 (45%), Positives = 558/905 (61%), Gaps = 35/905 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP+ID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIIAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   L+E+Q   ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LGAAGAEASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL+SVK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELISVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     E DILL    G+ VRF    +R   GR + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A                      G  +E           
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESA---------------------GGSEDENEDDNGVEETA 757

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            N             Q+ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 758 ANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAE 907
            DE E
Sbjct: 876 EDEDE 880



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 62/268 (23%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+R  +S +    R G+          D I  +      + +L  T  G+ 
Sbjct: 539 VVTVSHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKV 598

Query: 706 VRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
              P+  +   AG N+ G   I+   L  G++V ++  V                     
Sbjct: 599 FWLPVYQL-PEAGSNARGRPIINWIPLEPGERVQAVLPVRE------------------- 638

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                              QF+   ++ G  K+T   +F    R
Sbjct: 639 -------------------------------YADGQFVFFATKNGTVKKTPLGEFAF--R 665

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             +G  A ++ +     ALV V   +    I+L +  G  +R   +++R   R   GV  
Sbjct: 666 LARGKIAINLDEG---DALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRG 722

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
                 E VVS+  + ES    E E+ +
Sbjct: 723 IKMPAGEEVVSL-IVAESAGGSEDENED 749



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 29/269 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VK+ PL  +  +   GK    + + + D +  + +      +L F
Sbjct: 639 YADGQFVFFATKNGTVKKTPLGEFAFRLARGKI--AINLDEGDALVGVGLTDGERDILLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALI-----------------------NILSLNQGER 629
           +S G   +    ++      A G   I                       N       E 
Sbjct: 697 ASNGKTVRFGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGSEDENEDDNGVEET 756

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILS 686
                   +     +  Y++ AT++G  +R  L D+ +  R  +  + +       ++++
Sbjct: 757 AANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVA 816

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                  +++LL +  G  VR   S I    GRN+ GV  I L+K +++ ++  +  +  
Sbjct: 817 AVLMGSGDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +      +      +  +E+    
Sbjct: 876 EDEDEVAVAAPAATDGAPAAASSEDAAQE 904


>gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
 gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168]
          Length = 878

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I                                             
Sbjct: 723 GIKLAGEDKVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 69/411 (16%), Positives = 141/411 (34%), Gaps = 35/411 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR       ARR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDARRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   +  + L   +++ +++             ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATG---VRGIKLAGEDKVVSLI------IPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           S I    GRN+ GV  I  A+ + V+ +  V     D +           +
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGE 859


>gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217]
 gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217]
          Length = 908

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/924 (44%), Positives = 570/924 (61%), Gaps = 87/924 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YDA+ R+AQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+ID P + ++ LME I GPDFPT A I GR GI +AY TGRG  V+R  
Sbjct: 186 NLTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYKTGRGRAVMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AILELRL RLTGL  + I +E   L I I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIVIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V ++    RRT I E  +DM  ED I  ED+VVT+SH 
Sbjct: 486 GLLLILRSPERLMEVIKEELEEVLEQYGDVRRTIINENEIDMSLEDLINEEDVVVTLSHT 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GERIT I+P  E     ++ +++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGERITAILPVREYA---DDKFIIMATAHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 A+R   GR + GVRGI L  G +V+S+ +     A                   
Sbjct: 723 TGEEIIALRPM-GRTATGVRGIKLEDGQKVVSLIVPKGDGA------------------- 762

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                             ILTV+E G+GKRT   ++   +R  K
Sbjct: 763 ----------------------------------ILTVTENGYGKRTELNEYPAKSRGTK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  V++ N  GA+V    V + D+I+L+SDKGTL+R P   + I  R T+GV I  T
Sbjct: 789 GVVSIKVTERN--GAVVGAVQVGEFDEIMLISDKGTLVRTPAEGVSIIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRESEIVDEAEST 909
           A+DE+VV ++RI E +  +  ++ 
Sbjct: 847 AEDEKVVGLQRIEEIQTDEILDAD 870



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 102/273 (37%), Gaps = 17/273 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+  L+ Y   R  G     V ++D D +  + I      ++ F
Sbjct: 639 YADDKFIIMATAHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGSDDIMLF 696

Query: 593 SSLGFVYKEK-----------VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           S+ G V +                   G      + +    +  +G ++           
Sbjct: 697 SNEGKVVRFNEKARDSETGEVKIDAETGEEIIALRPMGRTATGVRGIKLEDGQKVVSLIV 756

Query: 642 SWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-NDILL 698
              +  ++  T++G  +R +L+++        G +++K+  R+  +       E ++I+L
Sbjct: 757 PKGDGAILTVTENGYGKRTELNEYPAKSRGTKGVVSIKVTERNGAVVGAVQVGEFDEIML 816

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR P   +    GRN+ GV  I  A+ ++V+ +  +     D          +
Sbjct: 817 ISDKGTLVRTPAEGV-SIIGRNTQGVTIIRTAEDEKVVGLQRIEEIQTDEILDADGNVIV 875

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            A+       + +  +   ++  + + +E+  +
Sbjct: 876 PAESVDGDELSTDTRATATEAPAQTDSAEDEQE 908


>gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
 gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220]
          Length = 878

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSWN  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIREQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ +                                             
Sbjct: 723 GIKLAESDSVVSLIV--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVEDTDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/227 (18%), Positives = 77/227 (33%), Gaps = 15/227 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   I         ++                 ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATGVRGI---------KLAESDSVVSLIVPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVEDTDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
              GRN+ GV  I  A+ + V+ +  V     D +            
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSAAEGD 859


>gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11]
 gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11]
          Length = 913

 Score =  931 bits (2406), Expect = 0.0,   Method: Composition-based stats.
 Identities = 484/919 (52%), Positives = 638/919 (69%), Gaps = 16/919 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++   + +  +E           +VSI  EM+NSYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPETPENMDENKPERPQYDGPTVSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M ++G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PD+  + L+E I GPDFPTG V+LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIEDPDLTSEQLIEYIPGPDFPTGGVMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKAAM+EKIAE VREKRI
Sbjct: 241 RSGARKAYLEGRGSVIIRAKTKVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRRFLSSFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W ASDI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT +G  ++
Sbjct: 421 RHKLMTRRWPASDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE L+ILSSR R+LGII  EL  V+D    PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVT++  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF+
Sbjct: 541 EREDMVVTITSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP G   ++GKA++NIL +  G  I  IMP    +  W  L V+FAT 
Sbjct: 601 TDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPIS 711
            G+VRRN+LSDF  + R+GKIAMKL      ++++   C++++D++L T  G+ +RF  +
Sbjct: 661 AGDVRRNRLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLFTDSGRAIRFRTT 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +RVF  R S GVRGI L   D V+SM+++ H +A  +ER  Y+K   A   +       
Sbjct: 721 DVRVFNSRESTGVRGIRLNGDDHVVSMSVIRHFEASPEERAAYLKMRRAVAGIADDGES- 779

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                ++  V G IS++R  E+   E  ILT++  G GK +SS+D+ +  R G G+ A D
Sbjct: 780 ----DDEDVVAGAISQDRYAEMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVTAMD 835

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             K    GA+VA FPV  +DQI+L + KG  IRVP++ I   SR+  GV +F+T K E V
Sbjct: 836 --KAMRGGAIVASFPVEMDDQIMLATSKGQSIRVPIDGISFRSRSAGGVRVFNTGKGEEV 893

Query: 892 VSVERIRESEIVDEAESTE 910
           VSV  I E    DEA+++E
Sbjct: 894 VSVAWIAEQSDEDEADTSE 912


>gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 878

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 878

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 ITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH 
Sbjct: 487 ELLHILGSAERLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D V+S+ +                                             
Sbjct: 723 GIKLAGEDSVVSLIV--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 68/416 (16%), Positives = 135/416 (32%), Gaps = 35/416 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + ++R        RR  +  + + 
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSAERLMEVIREELELVR--DQFGDERRTEITANSSD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------KLAGEDSVVSLIVPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   S++   +R  +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +  
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDEIAP 864


>gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 879

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/917 (44%), Positives = 577/917 (62%), Gaps = 81/917 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LSEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFVCHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D V+ +IR +  P  A+  L+ + W   ++  +++ 
Sbjct: 367 IFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAMLEQ 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKVIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL +  RL+ +I++ELL++K++ +  RRT + E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILENPERLMEVIREELLAIKEQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S    ++EDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNKGKMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E   + L +  AT  G V++ KLS+F
Sbjct: 607 LPEASRGARGRPIVNLLPLGQNERITAILPVREYE---DGLNIFMATASGIVKKTKLSEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------ISA 712
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF              +  
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSAQGKVVRFLEEEEETLEDGTVRVKG 723

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI L+ GD+V+S+ I                                
Sbjct: 724 VRAM-GRTATGVRGIKLSAGDKVVSLII-------------------------------- 750

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   E  ILTV+E G+GKRT+  ++   +R+ +G+ +  V
Sbjct: 751 ---------------------PRGEGEILTVTENGYGKRTAESEYPTKSRATQGVISIKV 789

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G ++    V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV
Sbjct: 790 SERN--GNVIGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVV 847

Query: 893 SVERIRESEIVDEAEST 909
            ++R+ E +  +E  +T
Sbjct: 848 GLQRVAEPDDEEEDNNT 864


>gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654]
 gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654]
          Length = 917

 Score =  931 bits (2405), Expect = 0.0,   Method: Composition-based stats.
 Identities = 489/908 (53%), Positives = 642/908 (70%), Gaps = 17/908 (1%)

Query: 1   MTEHIISSDEE---EEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +     +       +  T    S++I  EM+NSYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPEPPENGGELPPERPTYSGPSITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M ++G   +K Y K +R   + MG+YHPHG+AAIYDALARM QD+S+ L L++G
Sbjct: 61  RRILYAMHEVGNTHDKPYRKSSRPVADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R++KAA  LL+D+ KDTVDF+ NYDG  +EP+VL AR+PN
Sbjct: 121 QGNFGSMDGDKPAAFRYTEVRMEKAAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+I++PDI  + LMEII GPDFPTG VILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIESPDISDERLMEIIPGPDFPTGGVILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IVV E+P+QVNKA M+EKIA+LVR+K++
Sbjct: 241 RSGARKAYLEGRGSVILRAKTRVEEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKL 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+ +V+LNQL+R+T LQ+ F  NM+ALNG KPE+ T
Sbjct: 301 EGIAAIQDESDRLGVRVVIELKRDATPEVVLNQLFRFTQLQTSFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L+ F+ FREEVV RRT +LL KARDR+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRDFLRHFITFREEVVARRTAFLLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A DI D I L+DD ++T+  DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRRWPAEDIADYIRLVDDPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E LDIL SR R++ II  EL +VKDE   PRR+ IVE   DM+DED I
Sbjct: 481 TDELQELAGKIREYLDILRSRDRIMAIISDELTAVKDEFAVPRRSEIVEWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVT++  G+ KR PL+ YR Q+RGGKG SG+  +DED +T LF+ +THT +LFF+
Sbjct: 541 EREDMVVTITQSGWAKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP+G   +RGKA++NIL +  G  I  IMP   DE+ W++L +VFAT 
Sbjct: 601 TDGMAYKLKTWRLPLGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
            G+VRRN+LSDF  + R+GKIAMK +  DE    ++   C + +D++L T  G+ +RFP+
Sbjct: 661 KGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICDENDDVMLVTNKGRAIRFPV 720

Query: 711 SAIRVFAGRNSVGVRGIS-LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             +RVF  RNS GVRGI  L K D+V+SM+++ H DA  +ER  Y+K     RR ++G  
Sbjct: 721 PDVRVFNSRNSTGVRGIRLLGKDDEVVSMSVIRHFDATSEERTAYLK----MRRQMAGAD 776

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           E   S   D +VEG I++ER +E++  E+ ILT++EKG GK +SS+D+ +  R G+G+ A
Sbjct: 777 ETDDSDDEDEAVEGAITQERFEEMQAAEELILTITEKGLGKLSSSHDYPVRGRGGQGVTA 836

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +K    G LVA FPV   DQ++L + KG  IR PVN I   SR   GV +F+T K E
Sbjct: 837 --FTKAMPGGDLVACFPVGMEDQVMLATSKGQSIRCPVNGISFRSRGAGGVKVFNTGKGE 894

Query: 890 RVVSVERI 897
            VVSV  I
Sbjct: 895 SVVSVAWI 902


>gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
 gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307]
          Length = 921

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 467/915 (51%), Positives = 629/915 (68%), Gaps = 18/915 (1%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  +     G   +SIT EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M + G 
Sbjct: 14  MPPERPVYDG-PQISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGN 72

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K AR  G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD P
Sbjct: 73  THDKAYRKSARAVGDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNP 132

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A ++L D+ KDTVDF+ NYDG  +EP VL +R+PN+LVNG GGIAVG
Sbjct: 133 AAMRYTEVRMDKPAAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVG 192

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGE +D C+ +I+NPD+  + L+E I GPDFPTG ++LGR G + AY  GR
Sbjct: 193 MATNIPPHNLGEAIDACLGLIENPDLTSEDLIEYIPGPDFPTGGIMLGRAGARKAYLEGR 252

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS++ R  +H E+   DR  I+++EIPYQVNK+ M+++IAE  R+K+I  I+ ++DESDR
Sbjct: 253 GSVITRAKTHTEEIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDR 312

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE  TL   L +F+ FR
Sbjct: 313 NGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLRRFLTSFLDFR 372

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV+RRT + LNKARDRAHVL GLA+AV+N+DEVV  IR S +  +AR  LM R+W A 
Sbjct: 373 EDVVIRRTAFELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAE 432

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           +I   I LIDD ++    DGT  LSE+Q RAILELRL RLT +G  ++ +EL  L  +IK
Sbjct: 433 EILPFILLIDDPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIK 492

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+SR R++ II+ EL   K     PRRT+IV+   DMEDED I  +DMVVTV+  
Sbjct: 493 EYLAILASRERIMQIIRDELAECKTLFAVPRRTQIVDWSGDMEDEDLIESQDMVVTVTET 552

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  +RAQ+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WR
Sbjct: 553 GYIKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWR 612

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP GS  ++GKA++NIL +  G  I  IMP   DE  W++L +VFAT  G VRRN+LSDF
Sbjct: 613 LPQGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDF 672

Query: 666 IQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             + R+GKIAMK    ++  ++++   C+ ++D++L T  G+ +RF  + +RVF  R S+
Sbjct: 673 TNVMRNGKIAMKFEGENAGVQLINARICSADDDVMLVTNSGRAIRFASTDVRVFNSRASL 732

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L   D+++SM+++ H  A+ DER  Y+K   A   L      +   ++++    
Sbjct: 733 GVRGIKLKGDDKIVSMSVIRHFKAEADERAAYLKMRRAMAGLA-----DDAEIEDEDVPA 787

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           GNI++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+ A D  K    G +V
Sbjct: 788 GNITQERYAEMSAAENLILTITAGGSGKLSSSHDYPLRGRGGMGVTAMD--KAMRGGEIV 845

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F+T K+E VVSV  I +   
Sbjct: 846 ASFPVERDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKNEIVVSVAYIADQAD 905

Query: 903 -------VDEAESTE 910
                   D  E+TE
Sbjct: 906 EGGDTGSDDVTETTE 920


>gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259]
 gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259]
          Length = 849

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/906 (43%), Positives = 567/906 (62%), Gaps = 68/906 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   EQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR  LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP+VL  + PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMARIAHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL ++ +   A++D P  D+++L+ I++ PDFPT  +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNLTDICNALFALLDAPATDIESLISIVQAPDFPTAGIIYGLSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R   H+E    SG ++ I++ E+PYQVNKA +L +I ELVR+K+I  IADLRDESD+ G
Sbjct: 242 MRATCHVEDLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV IELKRG +ADV+LN LY+ T +Q  F +NMVAL   +P    L  +L AF+  R E
Sbjct: 302 MRVYIELKRGENADVVLNNLYKQTQMQDTFGMNMVALIDGQPRLLNLKEMLDAFLRHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+R H+L GLA+A+AN+DE+V +I+ S  P  A+  L+ R+W ++ +
Sbjct: 362 VVTRRTVFDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMV 421

Query: 428 KDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++  ID       + G          +LSE+Q + ILE++L RLT L  D I  E   
Sbjct: 422 EEMLARIDPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I + LDIL++ +R+  II++EL  V+D+    RR+ IVE   DM  ED I  E+MV
Sbjct: 482 IMAKIADLLDILANPARITQIIREELTQVRDQFGDGRRSTIVENAQDMSMEDLIKPEEMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY+K  PL  YRAQ+RGG+G+     +DEDF+  +F+ +TH  +L FS+ G +Y
Sbjct: 542 VTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRLY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G   ARGK ++N+L L  GE+I+ ++P    +   +  YV  AT +G V++
Sbjct: 602 WLKVYNVPQGGRAARGKPIVNLLPLEDGEKISALLPVKTFD---DEHYVFMATANGIVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +   +G IA+ LD  D +         +D++L +  G+ VRF  + +R   GR
Sbjct: 659 TPLSEFSRPRTAGIIAVGLDDGDVLCGASITDGRHDVMLFSDSGKAVRFDENDVRPM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV G+ LAKG ++IS+ +                                       
Sbjct: 718 AARGVIGMKLAKGAKLISLLVAED------------------------------------ 741

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                           +  F+LT +E G+GKRT   ++    R+ +G+ A   S+ N  G
Sbjct: 742 ----------------ENDFVLTATENGYGKRTPIAEYTRHARATQGMIAIQTSERN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA   V  +D+I+L++  G LIR  V EIR  SRAT+GV + +  K E+++S+E++ E
Sbjct: 784 KVVAANLVKADDEIMLITTGGVLIRTRVKEIRAMSRATQGVTLINLDKGEKLISLEKVAE 843

Query: 900 SEIVDE 905
           ++  +E
Sbjct: 844 TDNEEE 849


>gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 915

 Score =  930 bits (2404), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/949 (43%), Positives = 579/949 (61%), Gaps = 112/949 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+V+GC+A+I+N D+ +D LM  I GPDFPTG +I GR+GI  AY TGRGS+ +R  +
Sbjct: 187 LTEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG S +++LN LY++T +Q+ F +NMVAL+  +P+   L  IL AF+  R EVV RRT
Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+D V+ +IR S  P  A+  L+ R W   ++  +++ 
Sbjct: 367 VFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLEK 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  YL+E Q +AIL+LRL +LTGL  + I  E  SL   I 
Sbjct: 427 AGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+SH 
Sbjct: 487 ELLFILASPVRLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L++GERIT I+P  E +    + YV FAT +G V++  LSDF
Sbjct: 607 LPEASRGARGRPIINLLPLDEGERITAILPVKEYD---ADKYVFFATANGTVKKTSLSDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
            +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   +             
Sbjct: 664 SRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADATDEVDT 723

Query: 713 -------------------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                                    +R   GR + GVRGI L  GD+V+S+ +     A 
Sbjct: 724 DDDAGNDDDGSDNGEGTESKGTFKGVRPM-GRTAAGVRGIKLGAGDKVVSLIVPRGDGA- 781

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                               ILT +E G
Sbjct: 782 ----------------------------------------------------ILTATENG 789

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT+  ++   +R  +G+ +  V + N  G ++    V D DQI+L+++ GTL+R  V
Sbjct: 790 YGKRTALDEYPTKSRGTQGVISIKVDERN--GKVIDAIQVEDTDQIMLITNGGTLVRTRV 847

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD------EAESTE 910
           +E+ +  R T GV +  T +DE VV ++R+ ES+  +      E E +E
Sbjct: 848 SEVSVIGRNTGGVRLIRTGEDETVVGLQRVAESDEDENEVLAVEGEVSE 896



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 4/147 (2%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQ 692
                    +  ++ AT++G  +R  L ++   +R  +  + +   +   +++       
Sbjct: 770 VVSLIVPRGDGAILTATENGYGKRTALDEYPTKSRGTQGVISIKVDERNGKVIDAIQVED 829

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + I+L T  G  VR  +S +    GRN+ GVR I   + + V+ +  V  +D D +E +
Sbjct: 830 TDQIMLITNGGTLVRTRVSEV-SVIGRNTGGVRLIRTGEDETVVGLQRVAESDEDENEVL 888

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDS 779
                +S      +           D 
Sbjct: 889 AVEGEVSEGTDTAADTGAVDAGEAGDE 915


>gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
 gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218]
          Length = 877

 Score =  930 bits (2403), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/891 (44%), Positives = 564/891 (63%), Gaps = 67/891 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+D+++ +IR +  P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L   ERIT I+P  E     ++ ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEDNERITAILPVTEFS---DDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 SNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L +GDQV+S+ +                                             
Sbjct: 722 GMKLMEGDQVVSLIV--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  ILTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 737 --------PKTDGDILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERN--GRVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             ++ D+ +++++ GTL+R  V E+    R T+GV +  T++DE+VV ++R
Sbjct: 787 QADEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDEQVVGLQR 837



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/427 (14%), Positives = 149/427 (34%), Gaps = 29/427 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E ++ +R                  A
Sbjct: 469 EHEKILDEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDA-----RRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   DL +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 SHDIDLEELIAREDVVVTLSHEGYV-KYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
               D +   S      + ++  +     T R   IV  L   ++E             +
Sbjct: 583 ANTHDNILCFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFSNVRSNG--LIAVNLRDDDSLIGVDITNGDSEIMLFSKSG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A G   + ++  +Q                  +  ++  T++G 
Sbjct: 701 KVVRFNEDQVRAMGRTASGVRGMKLMEGDQ---------VVSLIVPKTDGDILTVTENGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+++   +R+ +  + +        ++      + ++ ++ T  G  VR  ++ +
Sbjct: 752 GKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  ++ +QV+ +  +   +            M+     +     E  
Sbjct: 812 -SQVGRNTQGVTLIRTSEDEQVVGLQRIEEIEESELLEGEEGSEMTENVDAVEAPAPEAP 870

Query: 774 SLKNDSS 780
           +  +  +
Sbjct: 871 TEGDSEA 877


>gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 878

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
 gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT]
          Length = 864

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/909 (43%), Positives = 557/909 (61%), Gaps = 67/909 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 14  DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 74  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 134 YTEIRMARIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+  C+A++ NP+  +D L+EII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 194 IPPHNLNEVIAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTVGVREGYRTGRGRVV 253

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E       + ++V E+PYQVNK   +EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 254 MRGRTHVEDLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGM 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 314 RVVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P  A+RELM R+W +  ++
Sbjct: 374 VTRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVE 433

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 434 EMLKRAAMEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEI 493

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  II +EL ++ ++    RR+ IV    D+  ED I  +D+VV
Sbjct: 494 MDVIADLLDILARSERVTQIIVEELTAILNQFGDKRRSEIVHNAQDLSLEDLITPQDVVV 553

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 554 TLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGRVYW 613

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L  GE+I  I+P  E +    N +V  AT  G V++ 
Sbjct: 614 LKVYEVPQGSRVSRGKPIVNLFPLEDGEKINAILPVKEFD---ENHFVFMATAKGTVKKT 670

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F    RSG IA+ LD  D ++  E     NDI+L +  G+ V F    +R   GR 
Sbjct: 671 ALTEFSNPRRSGIIALNLDDGDYLIGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPM-GRA 729

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L    QVIS+ I  +                                     
Sbjct: 730 ARGVRGMKLQGKQQVISLLIADNDK----------------------------------- 754

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +L  +E G+GKRT   DFR S R  +G++A   S+ N  G 
Sbjct: 755 -----------------QTVLVATENGYGKRTVLADFRHSGRGTQGVKAIATSERN--GI 795

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V D+D+I+L++  G LIR  V EIR   RAT+GV + +  + E++  +E++ E+
Sbjct: 796 VVGARLVGDDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKVVET 855

Query: 901 EIVDEAEST 909
           +  +EA   
Sbjct: 856 DDDNEAVDE 864


>gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 878

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 878

 Score =  929 bits (2402), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAENDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638]
 gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638]
          Length = 888

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/905 (45%), Positives = 572/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL KDTVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 ITEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELVRDQFGDARRTEITANTSDINIEDLINREDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L+ F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN---VFMATASGTVKKTALTGF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  +D++L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAINLNEGDELIGVDLTSGSDDVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D V+S+ I                                             
Sbjct: 723 GIRLAGEDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 135/419 (32%), Gaps = 35/419 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + ++R       ARR  +  + + 
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELVR--DQFGDARRTEITANTSD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTGFSRPRSAGIIAINLNEGDELIGVDL--TSGSDDVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         R+                 ++  T+
Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------RLAGEDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    ++   +R  +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +     
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDEIAPETE 867


>gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
 gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 904

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/925 (43%), Positives = 566/925 (61%), Gaps = 88/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV GC+A+I+NPD+ ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  
Sbjct: 186 NINEVVSGCLALIENPDLTINELMEYIPGPDFPTAAIINGRKGIIDAYHTGRGRAVMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E
Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+   W    ++ +++ 
Sbjct: 366 VFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++NIL L++GERIT I+P  E     ++ Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNILPLSEGERITAILPVREYA---DDKYIIMATAHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    E++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRDSETGQVKLDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 A+R   GR + GVRGI L    +V+S+ +                         
Sbjct: 723 TGEEVLALRPM-GRTATGVRGIRLEDDQKVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  ILTV+E G+GKRT   ++   +R+ K
Sbjct: 757 ----------------------------PKDDGAILTVTENGYGKRTDLSEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  +S+ N  GA+V    V +ND+I+L+SDKGTL+R P   +    R T+GV I  T
Sbjct: 789 GVVSIKISERN--GAVVGAVQVGENDEIMLISDKGTLVRTPATGVSSIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
           A++E+VV ++RI E +  DE E  E
Sbjct: 847 AEEEKVVGLQRIDEIQ-DDEVELDE 870



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 156/434 (35%), Gaps = 26/434 (5%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLID 435
           L +  +   ++  L   + + + ++ +I              +R+   ++  D+ ++ + 
Sbjct: 474 LKEYEELLEIIAALLYILRSPERLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLI 533

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    + +   +  ++ Q     + +     G     +++E     + +    D +   S
Sbjct: 534 NEEDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFS 593

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGY 547
               +   ++  +     T R   IV  L   E E             +  ++  +  G 
Sbjct: 594 DFGKMYWLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYADDKYIIMATAHGT 653

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK--VWR 605
           VK+  L+ Y   R  G     V ++D D +  + I +    ++ FS  G V +    V  
Sbjct: 654 VKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGEDEIMLFSDAGKVVRFNEKVRD 711

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVFATKHGN 656
              G  +   +    +L+L    R  T +                  ++  ++  T++G 
Sbjct: 712 SETGQVKLDPETGEEVLALRPMGRTATGVRGIRLEDDQKVVSLIVPKDDGAILTVTENGY 771

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  LS++   +R+ K  + +        ++      + ++I+L +  G  VR P + +
Sbjct: 772 GKRTDLSEYPAKSRATKGVVSIKISERNGAVVGAVQVGENDEIMLISDKGTLVRTPATGV 831

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ ++V+ +  +     D  E       +          T E+ 
Sbjct: 832 SSI-GRNTQGVTIIRTAEEEKVVGLQRIDEIQDDEVELDEEGNPIVPATDEAVETTSEVD 890

Query: 774 SLKNDSSVEGNISE 787
           + K D + E   +E
Sbjct: 891 TPKADDAPEAEPAE 904


>gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
 gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1]
          Length = 878

 Score =  929 bits (2401), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIREQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D V+S+ I                                             
Sbjct: 723 GIKLAGEDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 135/430 (31%), Gaps = 35/430 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--EQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------KLAGEDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    ++   +R  +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDEHVVGLQRVAEPVDDEELDAIDGSAAEGDDEIAPETDS 868

Query: 771 EITSLKNDSS 780
           +     +   
Sbjct: 869 DDDVADDADE 878


>gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
 gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32]
          Length = 856

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/895 (44%), Positives = 563/895 (62%), Gaps = 58/895 (6%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR
Sbjct: 8   VAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGSVDGD PAA RYTE R+ 
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIRMY 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL D+ K+TV+  PNYD S +EP+VL A++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLA 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VAVI NP++  + L+ +I GPDFPT   I GR GI +AY+TGRG I +R  + +
Sbjct: 188 EVIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIYGREGILSAYSTGRGIIQMRARAIV 247

Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ IVVTEIPYQVNKA ++EKIAELVREK+I  I+DLRDESDR+G RVV+ELK
Sbjct: 248 ETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRVVVELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++LN LY+ T +QS F + M+A+   +P+  TL   +  F+  R E+V RRT +
Sbjct: 308 KDENPQIVLNHLYKQTQMQSSFGIIMLAIVNNRPKVLTLRETINHFIDHRREIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+  LD V+ +IR S NP  A+  LM   ++  +    + L  
Sbjct: 368 DLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEWLKKLGLS- 426

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             +        + LSE+Q +AILE+RL RLTG+ RD I +E + +   I    +IL+S +
Sbjct: 427 LPANHAEYAKPVMLSELQAQAILEMRLHRLTGMERDKIIDEYHEILRYIARLKEILASET 486

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  ELL +K++    RRT I++   ++  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 487 EILKIIVGELLELKEKFGDKRRTEIIDQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTM 546

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI S+   ++FF+  G VY  KV+ +P      RG
Sbjct: 547 YRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRG 606

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L+  E+IT I+P  E      + +++ AT+HG V++  L ++      G IA
Sbjct: 607 KAIVNLLNLSANEKITAILPVKEFA---ADKFIMMATRHGVVKKTPLMEYSHPRLGGIIA 663

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D+++SV       D+LL ++ G+ +RF  S +R   GR S GVRG++L   D V
Sbjct: 664 VNLDEGDKLISVALTDGRQDVLLASRNGKSIRFKESDVRTV-GRVSRGVRGMTLEDDDVV 722

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I+                                                    + 
Sbjct: 723 IGMEIINE--------------------------------------------------EY 732

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  + TV+E GFGKRT   ++R  +R GKGI     ++ N  G +V +  V D + ++L
Sbjct: 733 TDSTLFTVTENGFGKRTELGEYRCQSRGGKGIITIKTTERN--GCVVDIKQVVDENDLML 790

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++D+G ++RVPV    I  R T+GV +  T  DERVV+V R+ E E  D  EST+
Sbjct: 791 ITDQGKILRVPVEGFSIIGRNTQGVRLMVTEDDERVVAVARLAEKEEDDADESTD 845


>gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 878

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345]
 gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345]
          Length = 903

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/925 (44%), Positives = 560/925 (60%), Gaps = 88/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  
Sbjct: 186 NLNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 305 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+   W    +K +++ 
Sbjct: 365 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEK 424

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 425 AGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIA 484

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V       RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 485 ALLFILGSPERLMEVIKEELEEVLTNFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 544

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 545 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 604

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L +GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 605 LPLASRTARGRPIVNLLPLAEGERITAILPVREYA---EDKYIIMATSHGTVKKTALTAY 661

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF   A             
Sbjct: 662 SNPRVNGIIAVNLKDGDQLIGVDITDGNDDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721

Query: 713 -------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                  +R   GR + GVRGI L  G  V+S+ +                         
Sbjct: 722 TGEEVIALRAM-GRTATGVRGIKLEDGQTVVSLIV------------------------- 755

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          E  ILTV+E G+GKRT   ++   +R  K
Sbjct: 756 ----------------------------PKGEGDILTVTENGYGKRTDLAEYPAKSRGTK 787

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  T
Sbjct: 788 GVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRT 845

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
           A+DE+VV ++RI E ++ D     E
Sbjct: 846 AEDEKVVGLQRIDEIQVPDVELDEE 870



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 99/267 (37%), Gaps = 18/267 (6%)

Query: 536 EDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           ED  + + +  G VK+  L+ Y   R  G     V ++D D +  + I   +  ++ FS+
Sbjct: 640 EDKYIIMATSHGTVKKTALTAYSNPRVNG--IIAVNLKDGDQLIGVDITDGNDDIMLFSN 697

Query: 595 LGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIM---------PFPEDESSW 643
            G V +          G  +   +    +++L    R  T +                  
Sbjct: 698 EGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPK 757

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTT 700
               ++  T++G  +R  L+++   +R  K  + +   +     +      + ++I+L +
Sbjct: 758 GEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLIS 817

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  VR P + +    GRN+ GV  I  A+ ++V+ +  +        E       +  
Sbjct: 818 NKGTLVRTPATGVSSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQVPDVELDEEGNPIIV 876

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISE 787
           +    +    E  + + + +    I +
Sbjct: 877 EGAAGTEVQAEAVNTEAEVTETPKIED 903


>gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105]
 gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105]
          Length = 870

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/917 (43%), Positives = 564/917 (61%), Gaps = 73/917 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DSFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+TVDF PNYDGS +EP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EVV  C+  ID P+  +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 MPPHNLKEVVAACLYAIDAPECTVDDLIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E    G R+ I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKNTQLQDTFGINMVALVDGQPRLLNLRDLIFYFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KARDR HVL GLA+A+AN+DE + II+ +P P  A+ +L+ +SW++S ++
Sbjct: 362 ITRRTVFELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTPPVAKADLVAKSWDSSIVR 421

Query: 429 DLIDLIDDSSY---------------TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                    +  DG   LSEVQ + IL +RL RLTGL +D I
Sbjct: 422 EMLSRTELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            NE   +  +I + LDILS   R+  IIK EL S+ +E    RR+ I     ++  ED I
Sbjct: 482 LNEYKEVIDQIADLLDILSKPERINQIIKDELTSIGNEFADERRSMIEFNATELGTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  PL+ YRAQ+RGG+G+     +++D++  LF+ +TH ++L+FS
Sbjct: 542 TPQDMVVTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDTILYFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY  KV+ +P GS  +RG+ +IN+  L +GE+IT ++P    E    + YV  AT 
Sbjct: 602 NAGRVYWLKVYEVPQGSRTSRGRPIINMFPLAEGEKITAVLPVKSFE--DEDKYVFMATS 659

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+++KLSDF +  + G IA+ LD  D ++        ND++L +  G+ VRF  + +
Sbjct: 660 LGTVKKSKLSDFSRPMKRGIIAVNLDEGDFLIGAAMTNGTNDVMLFSDSGKAVRFDENDV 719

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GRN+ GVRG++L +G +VI+M +                                 
Sbjct: 720 RAM-GRNARGVRGMNLEEGQRVIAMLVAES------------------------------ 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 ++Q +LT +E GFGKRT   ++    R  KG+ A   S
Sbjct: 749 ----------------------EQQSVLTATENGFGKRTPVSEYTRHGRGTKGMIAIQTS 786

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +V+   VN  D+I+L++  G L+R  V+EIR   RAT+GV + S  +   +  
Sbjct: 787 ERN--GKVVSAVLVNPTDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDEGTWLSG 844

Query: 894 VERIRESEIVDEAESTE 910
           ++RI ES+  D  E+ E
Sbjct: 845 LQRIVESDAEDLGETDE 861


>gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
 gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581]
          Length = 899

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/906 (44%), Positives = 574/906 (63%), Gaps = 48/906 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K 
Sbjct: 7   EILPVNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL DL KDTVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARLAHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV+DGC+A+ID+  + +D LME I GPDFPTG +I GR GI  AY TGRG I +R   
Sbjct: 187 MVEVIDGCLALIDDYTLSVDDLMEYIPGPDFPTGGIINGRAGILEAYRTGRGRIYVRARH 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      R+ I+VTE+PYQVNKA ++EKIAELV++KRI  IA+LRDESD++G RVVIE
Sbjct: 247 TIEHDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG S +V++N L+  T LQ++F +NMVAL+G +P    +  +L+AF+  R EVV RRT
Sbjct: 307 VKRGESGEVVVNNLFAQTQLQNVFGINMVALDGGEPRTLNIKEVLEAFIRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+R H+L GL +A++N+DEV+ +I+ SP+   A+ +L++R+W    +  +++ 
Sbjct: 367 LFELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLER 426

Query: 434 IDDSSYTIGS----------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +S                    LS  Q +AILELRL RLTGL  + + +E   +  +
Sbjct: 427 AGATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILEK 486

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+S  RLL +I++EL +V+D+    RRT I    LD+  ED I  EDMVVTVS
Sbjct: 487 IAELTAILASADRLLEVIREELTAVRDQFGETRRTEIQASHLDLSIEDLIAEEDMVVTVS 546

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K  PLS Y+AQRRGG+G+S   M+DED +  L + STH +VL FS+ G VY  KV
Sbjct: 547 RSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRGKVYWLKV 606

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RGK L+N+L L + E I  I+P  + +    + Y+ FAT  G V+R  L+
Sbjct: 607 YEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYD---PDSYIFFATAKGTVKRTSLA 663

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G IA+ L+  D ++     +  +  +L +  G+ +RF  S +R   GR + G
Sbjct: 664 QFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM-GRTARG 722

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L  G +VIS+ I                                 S   D+  + 
Sbjct: 723 VRGMRLLDGAEVISLII-------------------------------PRSQLIDAEDQD 751

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           + + +  + L   + +ILT SE G+GKRT   +F +  R G+G+ A   S+ N  G+LVA
Sbjct: 752 DAAADSAEPLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERN--GSLVA 809

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V  +D+++L++DKGTL+R  V+E+ I+SR T+GV++    + E +V   RI E E V
Sbjct: 810 AMQVYASDEMMLITDKGTLVRTRVDEVSISSRNTQGVMLIRLGESESLVKTVRIDEPEEV 869

Query: 904 DEAEST 909
           D AE  
Sbjct: 870 DAAEVD 875



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 88/261 (33%), Gaps = 19/261 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VKR  L+ +   R  G     + + + D +    I S     +  
Sbjct: 642 YDPDSYIFFATAKGTVKRTSLAQFSRPRSVG--LIAIDLEEGDRLVGAAITSGSDHAMLL 699

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINIL-------------SLNQGERITTIMPFPED 639
           SS G   +     +      ARG   + +L              L   E          +
Sbjct: 700 SSNGKAIRFDESNVRAMGRTARGVRGMRLLDGAEVISLIIPRSQLIDAEDQDDAAADSAE 759

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDI 696
                 +Y++ A+++G  +R +L +F    R G+  + + + +     ++       +++
Sbjct: 760 PLDAGQIYILTASENGYGKRTRLEEFPLRGRGGQGVIAMQTSERNGSLVAAMQVYASDEM 819

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L T  G  VR  +  +   + RN+ GV  I L + + ++    +   +      +    
Sbjct: 820 MLITDKGTLVRTRVDEV-SISSRNTQGVMLIRLGESESLVKTVRIDEPEEVDAAEVDPED 878

Query: 757 HMSAQRRLISGDTEEITSLKN 777
                 +   G+ +       
Sbjct: 879 AAVESGQSEEGEGDTTQPSDE 899


>gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A
 gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum]
          Length = 878

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/903 (45%), Positives = 572/903 (63%), Gaps = 69/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ +I L+ LME I+GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL + K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAFKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRH-VSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                                             
Sbjct: 722 GINLQGEDRVVSLII--------------------------------------------- 736

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ GFGKRT+  ++   +R+ KG+ +  VS+ N  G +V   
Sbjct: 737 --------PRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERN--GKVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++R+ E    +E
Sbjct: 787 QVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 846

Query: 906 AES 908
            + 
Sbjct: 847 LDG 849


>gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
 gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13]
          Length = 877

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/923 (44%), Positives = 567/923 (61%), Gaps = 77/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K   S+S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LFGM +M   WN+
Sbjct: 2   DQFAKETISISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVKCAR+ GEVMGKYHPHG+ +IYD L RMAQD+SLR  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYVKCARVVGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL + +  +L D+ K+T+DF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDRISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G + ++  PD  +D L++II  PDFPTG +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLVEVINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIYGVSGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+     R+ I+V E+PYQVNK  +LE+IAE VREK++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN L++ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+D+ + IIR +P P  AR+ELM RSWN+S +K
Sbjct: 362 VTRRTIFELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVK 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            +++                     + I SDG   LSE Q   IL++RL RLTGL +D I
Sbjct: 422 SMLERTGADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
            NE   +  +I E LDIL+   R+L II  EL  V  E        RR+ I     D+E 
Sbjct: 482 LNEYGDVMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDVRRSEIELNASDLET 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY K  PLS YRAQ+RGG+GR     +++D+V  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS  G +Y  KVW +P GS  +RGK ++N+  L   E+IT I+P   E+ +  +N Y+
Sbjct: 602 LCFSDRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQGDEKITVILPLSGENRNFPDNHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  L+DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMATSQGTVKKTSLTDFSNPRKAGIIAVGLDEGDYLIGAALTDGKHDVMLFSDAGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L    +VI+M +                            
Sbjct: 722 DENDVRPM-GRTARGVRGMNLEDDQKVIAMLVAGD------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      + Q +LT +E GFGKRT   ++    R  KG+ 
Sbjct: 756 ---------------------------ESQSVLTATENGFGKRTPIAEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   VN+ND+I+L++  G LIR  V+E+R   RAT+GV + +  + 
Sbjct: 789 AIQTSERN--GKVVAATLVNENDEIMLITTGGVLIRTRVSEVREMGRATQGVTLIAVEEG 846

Query: 889 ERVVSVERIRESEIVDE-AESTE 910
             +  ++RI ES+I DE  E++E
Sbjct: 847 TTLSGLQRILESDIEDENPEASE 869



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 98/234 (41%), Gaps = 14/234 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +   +  G VK+  L+ +   R+ G     V + + D++    +      V+ F
Sbjct: 655 FPDNHYIFMATSQGTVKKTSLTDFSNPRKAG--IIAVGLDEGDYLIGAALTDGKHDVMLF 712

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +N   L   +++  ++   +      +  V+ AT
Sbjct: 713 SDAGKAVRFDENDVRPMGRTARGVRGMN---LEDDQKVIAMLVAGD-----ESQSVLTAT 764

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++     + ++I+L T  G  +R  
Sbjct: 765 ENGFGKRTPIAEYTRHGRGTKGMIAIQTSERNGKVVAATLVNENDEIMLITTGGVLIRTR 824

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +S +R   GR + GV  I++ +G  +  +  +L +D + +      +    ++ 
Sbjct: 825 VSEVREM-GRATQGVTLIAVEEGTTLSGLQRILESDIEDENPEASEEGSEQEKE 877


>gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis]
          Length = 888

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/924 (41%), Positives = 558/924 (60%), Gaps = 78/924 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  P   +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + + +DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDILS   R+  II  EL  +K E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   E  S   + Y
Sbjct: 602 LLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GV+G++L +G  VI+M +                           
Sbjct: 722 FDENDVRPM-GRNARGVKGMTLEEGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846

Query: 888 DERVVSVERIRESEIVD-EAESTE 910
             ++  ++RI E++  + E E+T+
Sbjct: 847 GAKLGGLQRIVENDANEVEGEATD 870



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 14/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+ G     V + + DF+    +      V+ F
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAG--IIAVGLDEGDFLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   + +    +  +    M   ED     +  V+ AT
Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVKGMTL----EEGQSVIAMLVAED----ESQSVLTAT 765

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 825

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  ISL +G ++  +  ++  DA+  E     +         +  T
Sbjct: 826 VSEIREL-GRATQGVTLISLDEGAKLGGLQRIVENDANEVEGEATDEEAPGGNEAAAEGT 884

Query: 770 EEIT 773
            E  
Sbjct: 885 GEPA 888


>gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
 gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans]
          Length = 871

 Score =  929 bits (2400), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/925 (42%), Positives = 570/925 (61%), Gaps = 79/925 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VKCAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A  LL DL K+TVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG + V+ N +  +D L+EII  PDFPTG +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNITEVIDGALHVLRNAEATIDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A+ +LM R+W++S ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    +                 Y I  DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
            NE   +  +I + LDIL+   R+  II  EL   K+E        RR+ I     D+  
Sbjct: 482 VNEYKEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSSIELNATDLGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P++ YRAQ+RGG+G+  +  +++D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P   E+ +   + Y+
Sbjct: 602 LCFSNRGRMYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPVSGENRTFPEDRYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             +T  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +G QVI++ +  +                         
Sbjct: 722 DENDVRPM-GRTARGVRGMNLEEGQQVIALLVAEN------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      ++Q +LT +E GFGKRT   ++    R  KG+ 
Sbjct: 756 ---------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +    
Sbjct: 789 AIQTSERN--GKVVAATLVDAADEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDG 846

Query: 889 ERVVSVERIRESEIVDE---AESTE 910
            ++  ++RI ES+I ++   AE  E
Sbjct: 847 TKLSGLQRILESDIEEDQSGAEEDE 871


>gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
 gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444]
          Length = 908

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/914 (50%), Positives = 609/914 (66%), Gaps = 24/914 (2%)

Query: 1   MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++            E     + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 1   MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   + G    K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF
Sbjct: 61  WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D DPPA+ RYTE RL K A  LL D+ KDTVDF+PNYDG+  EP VL AR+PN+LVN
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGEV+D C+A +DNP + +D L++II GPDFPT  +ILG  G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGTAGA 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY  GRGSI++R    IE+  GDR  IV+T IPYQV K+ ++EKIAE  ++KRI  I+
Sbjct: 241 RKAYHEGRGSIIMRARHQIEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDES+R+G RVVI+LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   L  I
Sbjct: 301 DIRDESNREGVRVVIDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEVLNLKDI 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +++FV FREEV+ RRTK+ LNKARDRAH+L+GL IAV NLDEVVRIIR SPNP  AR  L
Sbjct: 361 IESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVARETL 420

Query: 418 MQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           + R W   +I   I L++      +    T  LSE+Q RAIL+LRL RLT LGRD+I +E
Sbjct: 421 LAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDEIGDE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L   I E L IL+ R +L G+++QELL V+    TPR++ I      +EDED I RE
Sbjct: 481 LEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRKSEITAPADGIEDEDLIERE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVT++  GY+KR PLS +RAQ RGGKGRSG+  +DED V  +F+ STHT VLFFS+ G
Sbjct: 541 DMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTSTHTPVLFFSTAG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            VY+ KVWRLP G P  RG+ ++N+L  L++ E I T++P PEDE+ W  L VVFAT  G
Sbjct: 601 KVYRLKVWRLPEGGPTTRGRPVVNMLPALDKDETIATVLPLPEDEAEWGKLSVVFATAKG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           NVRRN +  F  I  +GK AMK +    D ++ V      +D+LL T+ G+ +RF    +
Sbjct: 661 NVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKAIRFAGDEV 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R F  R S GVRG++L   D+VIS++I+       DER  Y++    +            
Sbjct: 721 REFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPWKG----------- 769

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
               +   E  +S ER  EL+ +EQFILTV   G+GK +S+Y++R + R G+GI   D  
Sbjct: 770 ----EKEGEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNI 825

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G +VA FP    DQ++LV+D+  LIR+P++ +R+  R + GV +F+ +  E VVS
Sbjct: 826 GRN--GPVVASFPATQADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVSGGEHVVS 883

Query: 894 VERIRESEIVDEAE 907
             R+ E E  +  +
Sbjct: 884 AVRLAEEEGAESDD 897



 Score = 44.8 bits (104), Expect = 0.072,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 89/257 (34%), Gaps = 34/257 (13%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VV  +  G V+R  +  +      GK          D +  + ++     VL  +  G  
Sbjct: 653 VVFATAKGNVRRNSMDAFANIPSNGKFAMKFEEDSADRLIGVALLEASDDVLLATRSGKA 712

Query: 599 YKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDESSW-------- 643
            +     +         G      K    ++SL+   R+ T     ED   +        
Sbjct: 713 IRFAGDEVREFTSRTSTGVRGMTLKGDDEVISLSILHRVGTTPDEREDYVRFAPWKGEKE 772

Query: 644 ---------------NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEIL 685
                             +++    +G  + +   ++ +  R G+    +D+      ++
Sbjct: 773 GEPALSAERYAELQAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRNGPVV 832

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +    TQ + ++L T   + +R P+ ++RV  GR S GVR  +++ G+ V+S   +   +
Sbjct: 833 ASFPATQADQLMLVTDQAKLIRLPLDSLRVI-GRGSAGVRLFNVSGGEHVVSAVRLAEEE 891

Query: 746 ADYDERICYMKHMSAQR 762
               + +  +       
Sbjct: 892 GAESDDVGAVPDEGTAE 908


>gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16]
 gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16]
          Length = 888

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/910 (41%), Positives = 557/910 (61%), Gaps = 65/910 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DPFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF  NYDGS +EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+VDGC+ ++ NP   +D L+E+I  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEIVDGCLHLLRNPQATVDELIELIPAPDFPTAGIIYGIQGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+A R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKNTQLQDTFGMNMVALVDRQPRLLNLRQMLEYFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W+++ ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSALVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  + + +DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAEGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +   I + LDIL+   R+  II  EL +++ E    RR++I     +++ ED I
Sbjct: 482 VQEYRDIMAVITDLLDILARPERITAIIVDELTAIRAEFGDERRSQIELNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KV+ +P GS  +RG+ ++N+  L++GE+I  I+P  + +      ++  AT 
Sbjct: 602 NRGRLYWLKVYEVPQGSRNSRGRPIVNMFPLSEGEKINVILPVKQFD---AEHFIFMATA 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 659 RGTVKKTALTEFSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L  G  VI+M +     A+  E                       
Sbjct: 719 RPM-GRQARGVRGMNLEDGQTVIAMLVAPAETAEEAEAGMRGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V+  D+I+L++  G LIR  V EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GRVVAAALVSPEDEIMLITTGGVLIRTRVAEIREMGRATQGVTLINVDEGTKLSG 852

Query: 894 VERIRESEIV 903
           ++RI ES+  
Sbjct: 853 LQRIVESDAD 862



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 101/245 (41%), Gaps = 13/245 (5%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +   +  G VK+  L+ +   R+ G     +   + D++    +      V+ FS  
Sbjct: 650 EHFIFMATARGTVKKTALTEFSNPRKAGIIAVDLD--EGDYLIGAAVTDGQHDVMLFSDA 707

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YVVFA 651
           G   +     +     QARG   +N   L  G+ +  ++  P + +          V+ A
Sbjct: 708 GKAVRFDENDVRPMGRQARGVRGMN---LEDGQTVIAMLVAPAETAEEAEAGMRGSVLTA 764

Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R  ++++ +  R   G IA++       +++    + E++I+L T  G  +R 
Sbjct: 765 TENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAAALVSPEDEIMLITTGGVLIRT 824

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ IR   GR + GV  I++ +G ++  +  ++ +DAD        +           D
Sbjct: 825 RVAEIREM-GRATQGVTLINVDEGTKLSGLQRIVESDADNGAGGDEAEDADGAEGAAGAD 883

Query: 769 TEEIT 773
            +   
Sbjct: 884 LDANP 888


>gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 878

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I                                             
Sbjct: 723 GIKLAGDDKVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAEEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAAEEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341]
 gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341]
          Length = 880

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/905 (44%), Positives = 567/905 (62%), Gaps = 78/905 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714
             +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF               +R
Sbjct: 663 ANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKSGKVVRFNEKPIEDEEGNTKGGVR 722

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRGI L +GDQV+S+ +                                  
Sbjct: 723 PM-GRTAAGVRGIKLVEGDQVVSLIV---------------------------------- 747

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+
Sbjct: 748 -------------------PKNDGDILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSE 788

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV +  T++ E VV +
Sbjct: 789 RN--GSVVGAVQVTEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGL 846

Query: 895 ERIRE 899
           +RI E
Sbjct: 847 QRIDE 851



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 145/429 (33%), Gaps = 38/429 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     V +RD+D +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDALIGVEITDGESD 692

Query: 589 VLFFSSLGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
           ++ FS  G V +          G+ +   + +    +  +G ++             N+ 
Sbjct: 693 IMLFSKSGKVVRFNEKPIEDEEGNTKGGVRPMGRTAAGVRGIKLVEGDQVVSLIVPKNDG 752

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703
            ++  T++G  +R  L ++   +R+ +  + +        ++     T+ ++ ++ T  G
Sbjct: 753 DILTVTENGYGKRTTLDEYPAKSRATQGVVSIKVSERNGSVVGAVQVTEGDEFMMITNAG 812

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +             +    
Sbjct: 813 TLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALIENDAPA 871

Query: 764 LISGDTEEI 772
             + D EE 
Sbjct: 872 AQNDDGEEE 880


>gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72]
 gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72]
          Length = 877

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/913 (43%), Positives = 563/913 (61%), Gaps = 70/913 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEVVD C+ ++++P+ DL+AL+EI++ PDFPT  +I G  G+   Y TGRG +V
Sbjct: 182 IPPHNLGEVVDACLKLLEDPETDLEALIEIVKAPDFPTAGLIYGLHGVHEGYRTGRGRVV 241

Query: 250 IRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  +HIE    + DRE I+V E+PYQVNK  +LE+IAELV EK++  I+++RDESD+ G
Sbjct: 242 MRARTHIEPIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR    +V+LN LY++T LQ  F +NMVAL   KP    L  +L  F+  R E
Sbjct: 302 MRVVIELKRNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGKPRLLNLKQMLVCFLEHRRE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KARDR H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W +  +
Sbjct: 362 VVTRRTIFELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLV 421

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           ++++      SY           S     LS+ Q +AILELRL RLTGL +D I  E   
Sbjct: 422 EEMLSRALADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYRE 481

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I + LDIL+   R+  II +EL +++++   PRR+ IV    ++  ED I  EDMV
Sbjct: 482 VMDLITDLLDILARPERITAIIVEELTAIRNQFGDPRRSEIVLSTAEINIEDLITPEDMV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GY KR PL+ YRAQRRGG+G+    M+DEDF+  LF+ +TH +VL FSS G  Y
Sbjct: 542 VTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSSRGRAY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P G+  +RGK ++N+  L +GE+IT ++P    +      +V  AT  G V++
Sbjct: 602 WLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFD---EEHFVFMATSEGTVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L+ F    ++G IA+ LD  D ++ V     E D++L +  G+ VRF  S +R   GR
Sbjct: 659 TALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRFAESDVRPM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L  G +VI+M +                                       
Sbjct: 718 EARGVRGMTLEDGQRVIAMLV--------------------------------------- 738

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                         K + Q +LT +E G+GKRT   ++    R  KG+ A   S  N  G
Sbjct: 739 -------------AKGETQSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--G 783

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    V+  D+++L+S    LIR  V +IR   RAT+GV + +  +   +  +E++ E
Sbjct: 784 KLVGAVLVDPTDEVMLISTGAVLIRTKVQDIRELGRATQGVTLINLDEGTYLAGIEKVAE 843

Query: 900 S--EIVDEAESTE 910
           S  E  +  E  E
Sbjct: 844 SGAEADELVEGGE 856



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 14/250 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  V   +  G VK+  L+ +   R+ G     +   D      +        V+
Sbjct: 639 QTFDEEHFVFMATSEGTVKKTALTAFANPRKAGIIAVNLDDGDHLIGVAI--TDGECDVM 696

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G   +     +     +ARG   +  ++L  G+R+  ++      +      V+ 
Sbjct: 697 LFSDAGKAVRFAESDVRPMGREARG---VRGMTLEDGQRVIAML-----VAKGETQSVLT 748

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVR 707
           AT++G  +R  ++++ +  R  K  + + + D   +++        ++++L +     +R
Sbjct: 749 ATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGAVLVDPTDEVMLISTGAVLIR 808

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  IR   GR + GV  I+L +G  +  +  V  + A+ DE +   +  +A       
Sbjct: 809 TKVQDIREL-GRATQGVTLINLDEGTYLAGIEKVAESGAEADELVEGGEEGAADGEDAGA 867

Query: 768 DTEEITSLKN 777
                   + 
Sbjct: 868 PGAAGEGEQE 877


>gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
 gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia
           haemolytica PHL213]
          Length = 898

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/909 (45%), Positives = 571/909 (62%), Gaps = 36/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422

Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++          D   +    DG  YLSE Q RAILELRL RLTGL  + I  E   L  
Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R   GR +
Sbjct: 663 LDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L                          +  S +         +    ++ SSV
Sbjct: 722 TGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSSV 758

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E E
Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876

Query: 902 IVDEAESTE 910
             DE ES +
Sbjct: 877 -DDENESLD 884



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  +S++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 777 ILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGT 836

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I  A+ +QV+S+  V   + D +E +  +++       
Sbjct: 837 LVRTRVAEV-SLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETAETS 895

Query: 765 IS 766
             
Sbjct: 896 TE 897


>gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
 gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45]
          Length = 889

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/889 (52%), Positives = 620/889 (69%), Gaps = 8/889 (0%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+ RAIPDLRDGLKPVHRRILF M + G    K Y K AR  G+VMG+
Sbjct: 1   MRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQ 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A FLL 
Sbjct: 61  YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVD++ NYDG  +EP VL AR+PN+LVNG GGIAVGMATNIP HNLGEV+D  +A
Sbjct: 121 DIDKDTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I++PD+  + L++ + GPDFPTG ++LGR+G + AY  GRGS+VIR  + +E+   DR 
Sbjct: 181 LIEDPDLTSEQLIDYVPGPDFPTGGIMLGRSGARKAYLEGRGSVVIRAKTRVEEIRKDRW 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV+ EIPYQVNKA+M+EKIAE VR+K+I  I+ ++DESDR G RVV+ELKR A+A+V++
Sbjct: 241 AIVIDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELKRDATAEVVM 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T +Q+ F  NM+ALNG +PE+ TL   L  F+ FRE+VV RRT YLL KAR+R+
Sbjct: 301 NQLYRFTPMQTYFGCNMLALNGGRPEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERS 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GLA+AV N+DEVV  IR S +   AR +LM R W A DI   I LIDD ++T   D
Sbjct: 361 HILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDD 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           GT  LSE Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R+LGII  E
Sbjct: 421 GTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDE 480

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  V++    PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +RAQRRGGK
Sbjct: 481 LREVRELFAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRAQRRGGK 540

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G SG+  ++ED VT+LF+ +THT +LFF++ G VYK K WRLP G+  A+GKA++NIL +
Sbjct: 541 GVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKAIVNILPI 600

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSR 681
             G  +  IMP   DE  W++L VVFAT  G VRRNKLSDF  +  +GKIAMK       
Sbjct: 601 PTGVSVAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFTNVKSNGKIAMKFEGEHEG 660

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
             +++    + ++D++L T  G+ +RFP + +R+F  RNSVGVRGI L KGD ++SM+++
Sbjct: 661 TTLINARIASNDDDVMLVTDAGRAIRFPATDVRIFNSRNSVGVRGIRLGKGDNLVSMSVI 720

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            H +A  +ER+ Y+K     R +     ++ T  + +    G +S ER  E+   E  IL
Sbjct: 721 RHFEATSEERVAYLKQR---RLMAGLTDDDSTDDEEEQVQAGQLSTERYAEMSAAEDLIL 777

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           T++ KG GK +S++D+ +  R G G+ A   +K    G +VA FPV  +DQ++L + KG 
Sbjct: 778 TITAKGAGKVSSAHDYPVRGRGGMGVTAW--TKAMAHGPIVACFPVEMSDQVMLATSKGQ 835

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IRVPV  I   SR+  GV +FST K+E VVSV  I +    ++    +
Sbjct: 836 SIRVPVEGISFRSRSAGGVKVFSTGKNEEVVSVAWIADQGNEEDDAVED 884


>gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14]
          Length = 904

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/905 (45%), Positives = 560/905 (61%), Gaps = 35/905 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++    NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNPDID+D LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLSESINACIALIDNPDIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SPNP  AR  ++ R W    +  +
Sbjct: 363 RRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   L+E+Q   ILE+RL RLTGL +D + +E   L  
Sbjct: 423 LGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL    RLL +I++EL++VK E    RRT I     D++  D I  ED+VVTV
Sbjct: 483 VIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTV 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVKR P+SVYRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +  +V FATK+G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DGQFVFFATKNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F      GKIA+ LD  D ++ V     E DILL    G+ VRF    +R   GR + 
Sbjct: 660 GEFAFRLARGKIAINLDEGDALVGVGRTDGERDILLFASNGKTVRFGEDKVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI +  G++V+S+ +   A                      G  +E         + 
Sbjct: 719 GVRGIKMPAGEEVVSLIVAESA---------------------GGIEDENEDDNGVEEIA 757

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            N             Q+ILT +E G+GKRT   D+    R  +G+     ++ N  G LV
Sbjct: 758 ANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERN--GKLV 815

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +KDE++ +VER+  S  
Sbjct: 816 AAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 903 VDEAE 907
            DE E
Sbjct: 876 EDEDE 880



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 89/268 (33%), Gaps = 62/268 (23%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+R  +S +    R G+          D I  +      + +L  T  G+ 
Sbjct: 539 VVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKV 598

Query: 706 VRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
              P+  +   AG N+ G   I+   L  G++V ++  V                     
Sbjct: 599 FWLPVYQL-PEAGSNARGRPIINWIPLEPGERVQAVLPVRE------------------- 638

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                              QF+   ++ G  K+T   +F    R
Sbjct: 639 -------------------------------YADGQFVFFATKNGTVKKTPLGEFAF--R 665

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             +G  A ++ +     ALV V   +    I+L +  G  +R   +++R   R   GV  
Sbjct: 666 LARGKIAINLDEG---DALVGVGRTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRG 722

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
                 E VVS+  + ES    E E+ +
Sbjct: 723 IKMPAGEEVVSL-IVAESAGGIEDENED 749



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 99/269 (36%), Gaps = 29/269 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VK+ PL  +  +   GK    + + + D +  +        +L F
Sbjct: 639 YADGQFVFFATKNGTVKKTPLGEFAFRLARGKI--AINLDEGDALVGVGRTDGERDILLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQA------RGKALINILSLNQGERITTIMPFPEDESSWNN- 645
           +S G   +    ++      A      +  A   ++SL   E    I    ED++     
Sbjct: 697 ASNGKTVRFGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGIEDENEDDNGVEEI 756

Query: 646 ----------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILS 686
                            Y++ AT++G  +R  L D+ +  R  +  + +       ++++
Sbjct: 757 AANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVA 816

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                  +++LL +  G  VR   S I    GRN+ GV  I L+K +++ ++  +  +  
Sbjct: 817 AVLMGSGDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKDEKLQAVERMDASID 875

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSL 775
           + ++ +      +      +  +E+    
Sbjct: 876 EDEDEVAAAAPAATDGIPAAASSEDAAQE 904


>gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 898

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/909 (45%), Positives = 571/909 (62%), Gaps = 36/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422

Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++          D   +    DG  YLSE Q RAILELRL RLTGL  + I  E   L  
Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R   GR +
Sbjct: 663 LDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L                          +  S +         +    ++ SSV
Sbjct: 722 TGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSSV 758

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E E
Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876

Query: 902 IVDEAESTE 910
             DE ES +
Sbjct: 877 -DDENESLD 884



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  +S++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 777 ILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGT 836

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I  A+ +QV+S+  V   + D +E +  +++       
Sbjct: 837 LVRTRVAEV-SLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETVETS 895

Query: 765 IS 766
             
Sbjct: 896 TE 897


>gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1]
 gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans]
 gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1]
          Length = 888

 Score =  928 bits (2399), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/926 (42%), Positives = 557/926 (60%), Gaps = 80/926 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +H +L D+ K+TVD+ PNYDGS +EP+VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKISHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  P   +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLQTPQATIDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQPKLCNLKDLVEVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRNWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + + +DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDILS   R+  II  EL  +K E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSKVGARRSTVEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   E  S   + Y
Sbjct: 602 LLCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGEYRSFPADHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVGLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GV+G++L +G  VI+M +                           
Sbjct: 722 FDENDVRPM-GRNARGVKGMNLEEGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ESQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846

Query: 888 DERVVSVERIRE---SEIVDEAESTE 910
             ++  ++RI E   SE+ DEA   E
Sbjct: 847 GAKLGGLQRIVENDASEVEDEATGEE 872



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 14/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+ G     V + + DF+    +      V+ F
Sbjct: 656 FPADHYVFMSTSMGTVKKTALDEFSNPRKAG--IIAVGLDEGDFLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +N+    +  +    M   ED     +  V+ AT
Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVKGMNL----EEGQSVIAMLVAED----ESQSVLTAT 765

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 825

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  ISL +G ++  +  ++  DA   E     +  +      +  T
Sbjct: 826 VSEIREL-GRATQGVTLISLDEGAKLGGLQRIVENDASEVEDEATGEEATGGDEAAAEGT 884

Query: 770 EEIT 773
            E  
Sbjct: 885 GEPA 888


>gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2]
 gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2]
          Length = 871

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/916 (42%), Positives = 561/916 (61%), Gaps = 75/916 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  +S+ DEMQ SYL+YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  WNK 
Sbjct: 3   DFAREILPISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TV+F PNYDGS  EP VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMSKIAHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E V  C+A+IDNP++ +  LME + GPDFPT  +I G  GI+ AY TGRG + +
Sbjct: 183 PPHNLNETVSACIALIDNPELTISELMEFLPGPDFPTYGIINGTKGIREAYETGRGRVQM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     +  I+V EIPYQVNKA ++E+IAELV+EK+I  I+ LRDESD+ G R+
Sbjct: 243 RARTSVETDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KRG   +V++N LY+ T++Q++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 VIEVKRGEVPEVLINNLYKQTTMQTVFGINMVALINSQPKLLNLKDVLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR++AH+L GLA+A+ N+DE++ +I+ SP+P  A+  +++R W+  +++ L
Sbjct: 363 RRTIYDLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQL 422

Query: 431 IDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++ ++                  G   LS  Q +AILE+RL RLTGL +D I  E   L 
Sbjct: 423 LEKVEMKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLV 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           ++I E L+IL +  RL  ++++EL  V +     RRT I     D++ ED I  E+ +VT
Sbjct: 483 LKIAEFLEILRNPDRLTEVVREELQEVVENFGDKRRTEIDHSYQDIDAEDLIAVENRIVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GY+K  PLS Y+AQRRGG+G+S   M+++D +  + + STH  +L FS+ G +Y +
Sbjct: 543 LSRDGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKLYWQ 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K W+LP+ S  ++GK ++N+L L  GE IT+I+P  E        YV  ATK   V+R  
Sbjct: 603 KTWQLPLASRGSKGKPIVNVLPLETGEHITSILPVSEFS---EGYYVFMATKQSTVKRVA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF +   +G IA+ L   DE++       E DI+L + +G+ +RF  + +RV  GR +
Sbjct: 660 LSDFSRPRANGIIAVDLLDDDELVGTAITDGEQDIMLFSNIGKAIRFDENDVRVM-GRQA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L  G  +ISM +                                         
Sbjct: 719 RGVRGMKLKDGMSIISMQVAR--------------------------------------- 739

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         K+  ILT +E G+GK T   D+   NR G+G+ +   S  N  G +
Sbjct: 740 --------------KDTLILTATEHGYGKCTPVDDYSTINRGGQGVISIKTSDRN--GNV 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---- 897
           V    V  + +++L+++KGTL+R  V+EI +  R T+GV + +  K E VV +  +    
Sbjct: 784 VYSVAVTPDQEVVLITNKGTLVRTRVSEISVVGRNTQGVKLINVGKGEIVVGLAVVDVQE 843

Query: 898 ---RESEIVDEAESTE 910
               + +I D  ES E
Sbjct: 844 DELPDIDIEDMPESDE 859



 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 15/236 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +    VKRV LS +   R  G     ++  D+D +    I      ++ FS++G 
Sbjct: 645 YVFMATKQSTVKRVALSDFSRPRANGIIAVDLL--DDDELVGTAITDGEQDIMLFSNIGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +   QARG   +         ++   M     + +  +  ++ AT+HG  
Sbjct: 703 AIRFDENDVRVMGRQARGVRGM---------KLKDGMSIISMQVARKDTLILTATEHGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVRFPISAIR 714
           +   + D+  INR G+  + + + D   +V      T + +++L T  G  VR  +S I 
Sbjct: 754 KCTPVDDYSTINRGGQGVISIKTSDRNGNVVYSVAVTPDQEVVLITNKGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              GRN+ GV+ I++ KG+ V+ +A+V   + +  +        S +   I  + +
Sbjct: 813 SVVGRNTQGVKLINVGKGEIVVGLAVVDVQEDELPDIDIEDMPESDEAPEIVSEDD 868


>gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI
           454]
          Length = 867

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/916 (42%), Positives = 565/916 (61%), Gaps = 74/916 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K  H LL D+ K+TVDF PNYDGS  +P VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLAKIGHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++++P   +D L+EI+  PDFPT  ++ G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNHPQASIDELIEIVPAPDFPTAGIVYGVQGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQPKLLNLRELLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L +AR+R HVL GLA+A+AN+DE + II+ +P P  A++ LM R+W+++ ++
Sbjct: 362 VTRRTLYELRRARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQALMTRAWDSALVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           D++                      + + SDG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 DMLSRAQGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II  EL+++K E   PRR++I     ++  ED I
Sbjct: 482 TAEYREVMAQIADLLDILAKPERIRTIIADELVAIKAEFGDPRRSQIELNATELGTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +DMVVT+SH GY+K  PLS YRAQ+RGG+G+  +VM+D+D++  LFI +TH  +L FS
Sbjct: 542 TPQDMVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + +V  AT 
Sbjct: 602 NRGRVYWLKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFLATS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L  F +  R G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 LGTVKKTPLEAFSRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG+ L +G QVI++ +                                 
Sbjct: 719 RPM-GREARGVRGMQLEEGQQVIALLV--------------------------------- 744

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 + Q +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 745 -------------------AGGESQSVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTS 785

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V  + +I+L++  G LIR  V+EIR   RAT+GV + S  +  ++  
Sbjct: 786 ERN--GRVVAATLVEPDSEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSG 843

Query: 894 VERIRESEIVDEAEST 909
           +++I E++   +AES 
Sbjct: 844 LQQIAETDAEADAESD 859



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/232 (22%), Positives = 101/232 (43%), Gaps = 14/232 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PL  +   R   KG   V + D DF+    I      V+ F
Sbjct: 647 FSADKFVFLATSLGTVKKTPLEAF--SRPLRKGIIAVGLDDGDFLIGAQITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   +  + L +G+++  ++      +   +  V+ AT
Sbjct: 705 SDAGKAVRFDENDVRPMGREARG---VRGMQLEEGQQVIALL-----VAGGESQSVLTAT 756

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++       +++      +++I+L T  G  +R  
Sbjct: 757 ENGYGKRTPIAEYTRHGRGTKGMIAIQTSERNGRVVAATLVEPDSEIMLITTAGVLIRTR 816

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           +S IR   GR + GV  ISL +G ++  +  +   DA+ D         + +
Sbjct: 817 VSEIREM-GRATQGVTLISLDEGTKLSGLQQIAETDAEADAESDADTGGADE 867


>gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
 gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826]
          Length = 888

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/912 (44%), Positives = 561/912 (61%), Gaps = 68/912 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +  +  K +  V + DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G 
Sbjct: 27  LKTMSDFAKEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGN 86

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            WNKKYVK A I G+VMGKYHPHG++AIYD L RMAQ +SLR  L++GQGNFGS+DGDPP
Sbjct: 87  AWNKKYVKSATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPP 146

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K AH LL D+ K+TVDF PNYDGS QEP VL  R PN+LVNG  GIAVG
Sbjct: 147 AAYRYTEARMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVG 206

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HNLGE +D C+ ++D+PD D  ALM  + GPDFPTGA+I G  GI+ AY TGR
Sbjct: 207 MATNVPPHNLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALINGAKGIREAYETGR 266

Query: 246 GSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           G I IR  +HIE   S  ++ IVV E+PYQVNKA +L KIAELV+EK+I  I  LRDESD
Sbjct: 267 GRIYIRAKTHIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESD 326

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIEL+RG  A+VILN L++ T LQ +F +NM+AL G +P   +L   L+ F+A 
Sbjct: 327 KDGIRMVIELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQPRLLSLKEALQVFIAH 386

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RR+ Y L KAR+RAH+L GLAIA+AN+DE++ +IR S  P  A+  L+ R W  
Sbjct: 387 RREVVTRRSIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTP 446

Query: 425 SDIKDLIDLIDDSSYTIGSDGT--------MYLSEVQTRAILELRLARLTGLGRDDIRNE 476
             + D++      +      G          +LS  Q +AIL+LRL RLTGL +D I  E
Sbjct: 447 GQVVDMLARAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQE 506

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              +  EI+  L+IL    RLL +IK+ELL +K++ +  RRT+I++  L++  ED I  E
Sbjct: 507 FQEIIHEIEALLEILQVPERLLAVIKEELLDIKNQFNDVRRTQILDTHLNLSLEDLIAEE 566

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D V+T+SH GY+K  PL+ Y AQRRGGKG+S   ++DEDFV  L + +TH ++L F++ G
Sbjct: 567 DRVITLSHEGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTMLCFTNRG 626

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  KV+ LP     A+GK ++N+L    GER+  ++   +      + Y++FATK G 
Sbjct: 627 KVYWLKVYELPQAGRNAKGKPMVNLLPFEPGERLNAVLTTRDYP---EDQYLIFATKSGT 683

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  LS++ +    G IA+ L   DE++ V       DI+L +  G+ VRF  +++R  
Sbjct: 684 VKKTPLSEYSRPRSIGIIAINLREDDELVDVARTDGSRDIMLFSDAGKAVRFNENSVRSM 743

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S GVRG++L  G +VI++ +V                                   
Sbjct: 744 -GRDSTGVRGMNLDDGQRVIALCVVEEQGD------------------------------ 772

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  ILT++E G+GKRT   D+    R  KG+ +   S  N
Sbjct: 773 -----------------------ILTITENGYGKRTPVADYPQKGRGTKGVISIACSARN 809

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G  V    V +++ I+LV+D GTL+R  V EI  + R T+GV +  T   E++++V +
Sbjct: 810 --GQAVCAVQVLEDEHIMLVTDNGTLVRTRVAEISTSGRNTQGVRLIRTTDSEKLIAVAK 867

Query: 897 IRESEIVDEAES 908
           I       E + 
Sbjct: 868 IVAESEDSEGDE 879



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 15/232 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+ PLS Y   R  G     + +R++D + D+        ++ F
Sbjct: 669 YPEDQYLIFATKSGTVKKTPLSEYSRPRSIG--IIAINLREDDELVDVARTDGSRDIMLF 726

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      + G   +N   L+ G+R+  +              ++  T
Sbjct: 727 SDAGKAVRFNENSVRSMGRDSTGVRGMN---LDDGQRVIALCVVE------EQGDILTIT 777

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++D+ Q  R  K  + +       + +      ++  I+L T  G  VR  
Sbjct: 778 ENGYGKRTPVADYPQKGRGTKGVISIACSARNGQAVCAVQVLEDEHIMLVTDNGTLVRTR 837

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           ++ I   +GRN+ GVR I     +++I++A ++    D +      +    +
Sbjct: 838 VAEI-STSGRNTQGVRLIRTTDSEKLIAVAKIVAESEDSEGDEGMTEESGEE 888


>gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 878

 Score =  928 bits (2398), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 ITEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSAERLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D V+S+ I                                             
Sbjct: 723 GIKLAGEDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 136/430 (31%), Gaps = 35/430 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSAERLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGKDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAGEDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    ++   +R  +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDDDIAPEVDT 868

Query: 771 EITSLKNDSS 780
           +  +  +   
Sbjct: 869 DDDAADDADE 878


>gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301]
 gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301]
          Length = 882

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/910 (42%), Positives = 561/910 (61%), Gaps = 67/910 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C A++ +P++ ++ L+E++  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNINEVLDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTVGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E    G R+ ++V E+PYQVNK   +EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHVEDLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG  A+V+LN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 302 RVVIELKRGEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR R H+L GLA+A+AN+DE++ II+ +P P  A+  LM ++WN+  ++
Sbjct: 362 ITRRTVFELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +                  LS++Q + IL++RL RLTGL +D + +E   +
Sbjct: 422 EMLKRAAMEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL++ +R+  II  EL  ++ +    RR+ IV    D+  ED I  +D+VV
Sbjct: 482 MDIIADLLDILATPARVTAIINDELTEIRKQFGDKRRSEIVANAQDLSLEDFITPQDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 542 TLSHTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS   RGK ++N+  L +GE+I  I+   E +    N ++  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRTGRGKPIVNLFPLEEGEKINAILSVKEFD---ENHFIFMATSLGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LSDF    +SG IA+ LD  D ++  E     ND++L +  G+ V F    +R   GR 
Sbjct: 659 PLSDFANPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSM-GRA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ LA   QV+S+ I  +                                     
Sbjct: 718 TRGVRGMKLADNQQVLSLLIADN------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           +Q +L  +E G+GKRT   DFR S R  +G++A  +S+ N  G 
Sbjct: 741 ---------------DQQSVLVATENGYGKRTVLADFRHSGRGTQGVKAIAISERN--GL 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   VN++D+I+L++  G LIR  V EIR   RAT+GV + +  + E++  +E+I ES
Sbjct: 784 VVAAKLVNEDDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGEGEKLSGLEKIVES 843

Query: 901 EIVDEAESTE 910
           +  +     +
Sbjct: 844 DDPESEVDAD 853



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 103/254 (40%), Gaps = 14/254 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +   + LG VK+ PLS +   R+ G     + + + DF+    I +    V+  
Sbjct: 640 FDENHFIFMATSLGTVKKTPLSDFANPRKSG--IIAINLDEGDFLIGAEITNGANDVILV 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G         +       RG   +  + L   +++ +++    D+       V+ AT
Sbjct: 698 SNGGKAVWFTEDDVRSMGRATRG---VRGMKLADNQQVLSLLIADNDQ-----QSVLVAT 749

Query: 653 KHGNVRRNKLSDFIQ--INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  L+DF        G  A+ +  R+ ++   +   ++++I+L T  G  +R  
Sbjct: 750 ENGYGKRTVLADFRHSGRGTQGVKAIAISERNGLVVAAKLVNEDDEIMLITTGGVLIRTR 809

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  IR   GR + GV  I+L +G+++  +  ++ +D    E               + + 
Sbjct: 810 VKEIREL-GRATQGVTLINLGEGEKLSGLEKIVESDDPESEVDADATVELDASIDSNSEV 868

Query: 770 EEITSLKNDSSVEG 783
           E  T+   ++    
Sbjct: 869 ESDTNDNAEADDNA 882


>gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae]
          Length = 881

 Score =  928 bits (2397), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/909 (45%), Positives = 575/909 (63%), Gaps = 70/909 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    SD    + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+YDA+ R+AQ +S+R +L++GQGNFGSV
Sbjct: 59  NVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+ +I ++ L+E I GPDFPT A+I GR GI +A
Sbjct: 179 GIAVGMATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAIINGRRGIIDA 238

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG + IR  ++IE      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ L
Sbjct: 239 YRTGRGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISAL 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G R+VIE+KR A A+V+LN LY  T LQ  F +NMVAL   +P    L  IL+
Sbjct: 299 RDESDKDGMRIVIEVKRDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQPRLLNLKEILE 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L  LA+A+AN+D ++ +IR +  P  A+  L+ 
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIA 418

Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           R W   ++  ++    D++             +G  YL+E Q +AIL+LRL +LT L  D
Sbjct: 419 RPWQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHD 478

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E   L  +I   L IL+S  RL+ +I++EL +VK++    RRT I E   D+  ED
Sbjct: 479 KILDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRDVRRTEITENSADINIED 538

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L 
Sbjct: 539 LINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILC 598

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E +   +  YV  A
Sbjct: 599 FSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITAILPVREFD---DGHYVFMA 655

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L DF +   +G IA+ L+  DE++ V+    +N+++L +  G+ VRF  +
Sbjct: 656 TASGTVKKTSLKDFSRPRSAGIIAVNLNEGDELIGVDLTAGKNEVMLFSAGGKVVRFAEN 715

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   GR + GVRGI L  GD+V+S+ +                               
Sbjct: 716 AVRPM-GRTATGVRGIKLHAGDKVVSLIV------------------------------- 743

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                    E  ILTV+E G+GKRT   ++   +R+ +G+ +  
Sbjct: 744 ----------------------PRGEGDILTVTENGYGKRTEQSEYPTKSRATQGVISIK 781

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           VS+ N  G +V    V   DQI++++D GTL+R  V E+ I  R T+GV +  TA+DE+V
Sbjct: 782 VSERN--GNVVGAIQVEKTDQIMMITDAGTLVRTRVAEVSIVGRNTQGVTLIRTAEDEKV 839

Query: 892 VSVERIRES 900
           V ++R+ + 
Sbjct: 840 VGLQRVVDP 848



 Score = 67.9 bits (164), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 60/402 (14%), Positives = 141/402 (35%), Gaps = 34/402 (8%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           ++  +   +  + E  R +R +   E +    ++   N  D+   +       Y   SD 
Sbjct: 504 LMEVIREELEAVKEQYRDVRRTEITENSADINIEDLINQEDVVVTLSHQGYVKYQPLSDY 563

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE-------IKECLDILSSRSRLL 498
                E Q R       AR+      +     N+               + +        
Sbjct: 564 -----EAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 618

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G   + ++++       R T I+      +          V   +  G VK+  L  +  
Sbjct: 619 GARGRPIVNLLPLEQNERITAILPVREFDDGH-------YVFMATASGTVKKTSLKDFSR 671

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R  G     +   DE    DL   +    V+ FS+ G V +     +      A G   
Sbjct: 672 PRSAGIIAVNLNEGDELIGVDL--TAGKNEVMLFSAGGKVVRFAENAVRPMGRTATG--- 726

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +  + L+ G+++ +++             ++  T++G  +R + S++   +R+ +  + +
Sbjct: 727 VRGIKLHAGDKVVSLI------VPRGEGDILTVTENGYGKRTEQSEYPTKSRATQGVISI 780

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              +     +      + + I++ T  G  VR  ++ +    GRN+ GV  I  A+ ++V
Sbjct: 781 KVSERNGNVVGAIQVEKTDQIMMITDAGTLVRTRVAEV-SIVGRNTQGVTLIRTAEDEKV 839

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           + +  V+  + + ++    ++     +     ++ E  +L  
Sbjct: 840 VGLQRVVDPEEEEEDNQTLIEDTIGVKAEPDINSVENLTLNE 881


>gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1]
 gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1]
          Length = 890

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/905 (45%), Positives = 580/905 (64%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A I++ +I ++ALME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 LREVINGCLAYIEDENISIEALMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 427 AGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILSSAERLMEVIREELELMRDQFGDDRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +     A                                       
Sbjct: 723 GIRLAEGDRVVSLIVPREEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 744 --------------IMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 92/236 (38%), Gaps = 15/236 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LG VK+  L  +   R  G     V +RD+D +  + + + +   + FS+ G V +  
Sbjct: 650 TALGTVKKTALKEFSRPRSAG--IIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+R+ +++             ++  T++G  +R   
Sbjct: 708 ESAVRAMGRTA---SGVRGIRLAEGDRVVSLI------VPREEGAIMTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           N+ GV  I  A+ + V+ +  V     + +           +  +      +   +
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGEDDIAPEAEIDDEEI 873


>gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
          Length = 878

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4]
 gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688]
 gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4]
 gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688]
          Length = 848

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/905 (43%), Positives = 557/905 (61%), Gaps = 67/905 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D L++II  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTLGVKEGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E       + +++ E+PYQVNK  ++EKIAELV +K+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHVEDMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+AF+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE++ +I+ +P P  A++ LM R+W +  ++
Sbjct: 362 ITRRTVYELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVE 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 422 EMLKRAAMEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  +I  EL +++ +    RR+ IV    D+  ED I  +D+VV
Sbjct: 482 MDVIADLLDILAKPERVTQMIVDELAAIRQQFGDERRSEIVHNAQDLSLEDLITPQDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 542 TLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P GS  +RGK ++N+  L  GE+I  I+P  E +    N ++  AT  G V++ 
Sbjct: 602 LKVYEVPQGSRISRGKPIVNLFPLEDGEKINAILPVKEFD---ENHFIFMATAQGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F    R+G IA+ LD  D ++  E     NDI+L +  G+ V F    +R   GRN
Sbjct: 659 ALVEFSNPRRAGIIAINLDDGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRN 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L    +VIS+ I                                        
Sbjct: 718 TRGVRGMKLMAKQRVISLLIAEDDK----------------------------------- 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +L  +E G+GKRT   DFR S R  +G++A   S+ N  G+
Sbjct: 743 -----------------QTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSERN--GS 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V+D D+I+L++  G LIR  V EIR   RAT+GV + +  ++E++  +E++ E+
Sbjct: 784 VVAARLVSDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVET 843

Query: 901 EIVDE 905
           +  DE
Sbjct: 844 DDADE 848


>gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB]
 gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB]
          Length = 890

 Score =  927 bits (2396), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A I+N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 LREVINGCLAYIENEDISIEELMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ E+PYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMALKEILDAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR +PNP  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILS   RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILSDADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATALGTVKKTALKEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +                                             
Sbjct: 723 GIRLAEGDRVVSLIV--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +E  I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 738 --------PREEGAIMTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVEEEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 92/236 (38%), Gaps = 15/236 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LG VK+  L  +   R  G     V +RD+D +  + + + +   + FS+ G V +  
Sbjct: 650 TALGTVKKTALKEFSRPRSAG--IIAVNLRDDDELIGVALTNGNDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+R+ +++             ++  T++G  +R   
Sbjct: 708 ETAVRAMGRTA---SGVRGIRLAEGDRVVSLI------VPREEGAIMTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           N+ GV  I  A+ + V+ +  V     + +           +  +      +   +
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVEEEELDSIDGSVAEGEDDIAPEAEIDDEEI 873


>gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
          Length = 878

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804]
 gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii]
          Length = 885

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/911 (42%), Positives = 550/911 (60%), Gaps = 78/911 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEVRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP+  +D L+E+I  PDFPTG +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSVDELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IVV  IPYQVNK  + E+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +VILN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVILNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIHYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM R+W++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMSRAWDSSLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D  +               + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 EMLSRADLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDVMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS  G VY  KVW +P G+  +RG+ ++N+  L  GE+IT ++P  E      + YV 
Sbjct: 602 LCFSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFS---EDNYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GRN+ GVRG++L  G  VI++ +                             
Sbjct: 719 ENDVRPM-GRNARGVRGMTLEDGQSVIALLV----------------------------- 748

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRTS  ++    R  KG+ A
Sbjct: 749 -----------------------AGDESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + S     
Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGS 843

Query: 890 RVVSVERIRES 900
            +  V R+ ES
Sbjct: 844 SLSGVRRVVES 854



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 79/190 (41%), Gaps = 16/190 (8%)

Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + L      + D+++      MA +        +       +  + + I  +        
Sbjct: 468 MRLQRLTGLEQDKIVGEYKDVMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDT 527

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             S +E N +E   ++L      ++T+S  G+ K     ++R   R G+G +AT + + +
Sbjct: 528 RRSEIEFNATELDTEDLITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
            I  L   F  N ++ ++  SD+G +  + V E+   +R ++G   V +F  A  E++  
Sbjct: 588 WIDQL---FIANTHNYLLCFSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITV 644

Query: 894 VERIRESEIV 903
           V  ++E    
Sbjct: 645 VLPVKEFSED 654



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 143/403 (35%), Gaps = 31/403 (7%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    S+I+     +D       +D  + L
Sbjct: 495 LLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDTEDLITPTDMVVTL 554

Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           S      I    L+      R    +        +  + L I ++ + LL    +  +  
Sbjct: 555 S--HAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLCFSDRGRVYW 612

Query: 509 KDELDT------PRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLS 554
               +        R   IV      + E             ++ V   +  G VK+ PLS
Sbjct: 613 LKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSRGTVKKTPLS 672

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +   R+ G     V + + D++    +      V+ FS  G   +     +      AR
Sbjct: 673 DFSNPRKAG--IIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 730

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   +  ++L  G+ +  ++   +      +  V+ AT++G  +R  ++++ +  R  K 
Sbjct: 731 G---VRGMTLEDGQSVIALLVAGD-----ESQSVLTATENGYGKRTSIAEYTRHGRGTKG 782

Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            + +       +++        ++I+L T  G  VR  +S IR   GR + GV  IS+  
Sbjct: 783 MIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREM-GRATQGVTLISVDD 841

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           G  +  +  V+ +DAD D+        +      S +  E T 
Sbjct: 842 GSSLSGVRRVVESDADADDEDAEATDANDGESGASPEPTEPTE 884


>gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601]
          Length = 905

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/895 (53%), Positives = 627/895 (70%), Gaps = 7/895 (0%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI DEM++SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G   +K Y KCA   
Sbjct: 14  ISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKPYRKCATAV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL++ 
Sbjct: 74  GDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLERT 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+D+ KDTVDF PNY     EPVVL ARYPNVLVNG  GIAVGMAT IP HNLGEV
Sbjct: 134 AEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I+NPD+  + L+E I  PDFPTG VILGR+G + AY  GRGS++IR  + IE+
Sbjct: 194 IDATLALIENPDLSSEQLIEYIPAPDFPTGGVILGRSGARKAYLEGRGSVIIRAKTRIEE 253

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNKA M+E+IAE VR+K+I  IA ++DESDR G RVVIELKR A
Sbjct: 254 IKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDRSGVRVVIELKRDA 313

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+V+LNQLYR+T +Q  F  NM+ALNG KPE+ TL   L AF+ FRE+VV RRT YLL 
Sbjct: 314 TAEVVLNQLYRFTPMQVSFGCNMLALNGGKPEQLTLRTFLTAFLDFREDVVARRTAYLLR 373

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AVAN+DEVV  IR S +   AR +LM R W A +I   I LIDD +
Sbjct: 374 KARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAHEIAPYIQLIDDPT 433

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 434 HKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 493

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  E+ +V+D+   PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL+ YR+
Sbjct: 494 EIISNEMTAVRDQFAVPRRTEIVDWAGDMDDEDLIEREDMVVTVTQSGYIKRTPLADYRS 553

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG  ++++D VT LF+ +THT +LFF++ G VYK K WRLP G   ++GKA+
Sbjct: 554 QKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWRLPQGGRTSKGKAI 613

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL + QG  +  IMP    E  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK 
Sbjct: 614 VNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDFTNVMRNGKIAMKF 673

Query: 679 DSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  DE   +++   C++++D++L T  G+ +RFP+  +RVF  RNS GVRG+ LA GD+V
Sbjct: 674 EGDDEATRLINARICSEDDDVMLVTNSGRAIRFPVPDVRVFNSRNSTGVRGVKLANGDEV 733

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SM+++ H +A+ DER  Y+K   A   L           +   + +  +S ER  E+  
Sbjct: 734 VSMSVIRHFEAESDERASYLKMRRAMAGLADDAEAASDDDE--GNADSLLSAERYAEMSA 791

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  +LT++ KG GK +SS+D+ I  R G G+ A + S     G +VA FPV   DQI+L
Sbjct: 792 AENLLLTITAKGLGKLSSSHDYPIRGRGGMGVTAWEKSMR--GGEIVASFPVEMEDQIML 849

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +  G  IRVPV  I   SR+  GV +F+T + E VVSV  I +    DE E+ E
Sbjct: 850 ATSTGQSIRVPVEGISFRSRSAGGVKVFNTREGETVVSVAWIADQGDEDEGEAGE 904


>gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 898

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/909 (45%), Positives = 569/909 (62%), Gaps = 36/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV+EK+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLRQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPM 422

Query: 431 IDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++          D   +    DG  YLSE Q RAILELRL RLTGL  + I  E   L  
Sbjct: 423 LEAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E + IL+S  RL+ +I++EL  VK + +  RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELIHILTSPERLMEVIREELERVKTDFNDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+ +DF+  L + +T  ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+     ++I+L +  G+ VRF  +A+R   GR +
Sbjct: 663 LDAFSNVRASGLIALKLREGDELIGVDITDGNSEIMLFSAQGRVVRFAETAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L                          +  S +         +    ++ SSV
Sbjct: 722 TGVRGIKL-----------------------STTEISSEEIEEAEIIETDNEEAEDSSSV 758

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ G+GKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 SLDKDRVVSLVIPRTEGDILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E E
Sbjct: 817 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEQVVSLERVCEPE 876

Query: 902 IVDEAESTE 910
             DE ES +
Sbjct: 877 -DDENESLD 884



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  +S++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 777 ILTVTQNGYGKRTVISEYPVKSRATKGVVSIKVNERNGKVVAAVQVEETDQIMLITDAGT 836

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I  A+ +QV+S+  V   + D +E +  +++       
Sbjct: 837 LVRTRVAEV-SLVGRNTQGVRIIRTAEDEQVVSLERVCEPEDDENESLDALENAETVETS 895

Query: 765 IS 766
             
Sbjct: 896 TE 897


>gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
 gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181]
          Length = 855

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/908 (42%), Positives = 558/908 (61%), Gaps = 67/908 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   +N+ 
Sbjct: 3   QFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H +L D+ K+TVDF PNYDGS  EP+++  R PN+L+NG  GIAVGMATN 
Sbjct: 123 TEIRMSKISHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNF 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A++  P+  +D LME I GPDFPT  +I G +G+++ Y TGRG +V+
Sbjct: 183 PPHNLTEVINGLLALLQKPETSIDELMEFIPGPDFPTSGIIHGISGVRDGYRTGRGRVVM 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           RG +H+E       E I+V E+PYQVNK   +EKIAELV +K+I  I+DLRDESD+ G R
Sbjct: 243 RGKTHVESLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELK+G   +VILN LY+ T LQ  F +NMVAL   +P    L  IL AF+  R EV+
Sbjct: 303 VVIELKKGEIPEVILNNLYKQTQLQDNFGMNMVALIDGQPRLLNLREILDAFLKHRREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GLA+A+AN+DE+++II+ +P P  A++ELM+RSW +  +  
Sbjct: 363 TRRTVYELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDVVSS 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++                    +    LS+ Q + IL+LRL RLTGL ++ I  E +++ 
Sbjct: 423 MLKKSSQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIM 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           + I + LDIL+   R+  II +EL  ++ +    RR+ IV    D+  ED I  +DMVVT
Sbjct: 483 VTIIDLLDILNKSERVTSIISEELTEIRSQYGDDRRSEIVTDAYDLSIEDLIAPQDMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY+K   L  YRAQ+RGG+G+  +  +++DF+  +F+ ++H ++L FSS G VY  
Sbjct: 543 LSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P GS  +RGK ++N+  L  GE+I  I+   +     ++ Y+  AT  G V++  
Sbjct: 603 KVYEVPQGSRISRGKPIVNLFPLMPGEKINAILAVKDFV---DDEYIFMATAKGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LSDF    +SG IA+KL + D ++       E DI+L +  G+ V F    +R   GRN+
Sbjct: 660 LSDFSNPRKSGIIAIKLANGDYLIGAGVTNGEQDIILISSGGKAVWFDEHDVRSM-GRNA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   +QV+S+ I    +                                    
Sbjct: 719 AGVRGMKLPDTEQVLSLLIASSNE------------------------------------ 742

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                           + +L  +E G+GKRT   +FR S R  +G++A  VS  N  G +
Sbjct: 743 ----------------ESVLVATENGYGKRTVLSEFRKSGRGTQGVKAIQVSDRN--GIV 784

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V D+D+I+L++  G LIR  V+EIR   RAT+GV + + +  E++  +E+I ES+
Sbjct: 785 VAAKLVGDHDEIMLITTGGVLIRTRVSEIRELGRATQGVTLINLSDGEKLSGIEKIVESD 844

Query: 902 IVDEAEST 909
            +D+ +  
Sbjct: 845 HIDDGQDD 852


>gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
 gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A
 gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1]
 gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1]
 gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719]
 gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192]
 gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016]
          Length = 923

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/950 (42%), Positives = 570/950 (60%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+      REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  YLS  Q +AILELRL RLTGL  + + +E   +
Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VV
Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646
            + + +P  S  ARG+ L+N+L L++GERIT ++    +    N                
Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662

Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                                     Y+  AT  G V++  L  F +   SG IA+KL+ 
Sbjct: 663 GEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V+E+ ++ R T+GV +   A DE +V +ER++E    D+ +  E
Sbjct: 847 TLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + + + D +    I      V+ FSS G 
Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     + I    ARG   +  + L +G+++ +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + + +     ++     +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             +GRN+ GV  I LA  + ++ +  V       DE +   +  +      +    E  +
Sbjct: 857 SLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESESEPAA 916

Query: 775 LKNDSSV 781
               +  
Sbjct: 917 EAEGNEE 923


>gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 812

 Score =  927 bits (2395), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/892 (44%), Positives = 562/892 (63%), Gaps = 85/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V + +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  +K + K 
Sbjct: 6   KVLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+GK+HPHG+ A+YDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R
Sbjct: 66  AHIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEAR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ K+TVDF PNYD S +EPVVL +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 126 MAKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DG V +ID+P++++  LM+II+GPDFPTG  I+GR GI+ AY TGRG+I +R V+
Sbjct: 186 LREVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIMGRQGIRQAYTTGRGTIKVRAVT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             EK SG +  I+VTE+PYQVNKA ++EKIAELVR+K+I  IADLRDESDR+G R+VIEL
Sbjct: 246 TFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+  V+LNQL+++T LQ  F + M+AL   +P    L  IL  ++  +++VV RRT+
Sbjct: 306 KRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEILFYYLEHQKDVVTRRTR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR  LM R              
Sbjct: 366 YDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSR-------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q +AIL++RL RLT L R+ I  E   L  +I+    IL+  
Sbjct: 412 ------------FGLTEKQAQAILDMRLQRLTALEREKIDEEYRELIKKIEYFNSILADE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             LLG+I+QELL +K++    RRT+I       ++ED I  EDMV+T++H GY+KR+P+ 
Sbjct: 460 RVLLGVIRQELLEIKEKYGDARRTQITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVD 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ QRRGG+G + +  ++EDFV  LF+ STH  +LFF++ G VY+ KV  +P    QA+
Sbjct: 520 TYKNQRRGGRGVTAMATKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAK 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  ++N+L ++Q ERIT I+P  E     ++ Y+   TK+G V++  LS++    R G I
Sbjct: 580 GTPIVNLLYVDQDERITAIIPVKEFT---DDHYLFMVTKNGIVKKTVLSEYDSSRRDGII 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+  D+++ V+  T + ++++ TK G  +RF  + +R   GR + GV+GI+L+ GD+
Sbjct: 637 ALSLEEGDKLIDVKLSTGQEEVIIGTKKGMAIRFSETDVRPM-GRTARGVKGITLSPGDE 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           VI + +V                                                     
Sbjct: 696 VIGLEVVD---------------------------------------------------- 703

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            ++  +LTV+ KGFGK+T   ++R+  R GKGI    V++ N  G +V +  V   D+++
Sbjct: 704 -EQAELLTVTSKGFGKKTPFSEYRVQGRGGKGIINMKVTQKN--GEVVGIVAVRPEDEVM 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +S +G +IRV   EI    RAT+GV +    KD+++ +V +I   E  +  
Sbjct: 761 AISGEGIMIRVKAAEISTQGRATQGVTLMKLNKDDQLTAVAKIAAQEDEEND 812


>gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2]
 gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1]
 gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 921

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/950 (42%), Positives = 570/950 (60%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+      REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  YLS  Q +AILELRL RLTGL  + + +E   +
Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VV
Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646
            + + +P  S  ARG+ L+N+L L++GERIT ++    +    N                
Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662

Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                                     Y+  AT  G V++  L  F +   SG IA+KL+ 
Sbjct: 663 GEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V+E+ ++ R T+GV +   A DE +V +ER++E    D+ +  E
Sbjct: 847 TLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 98/245 (40%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + + + D +    I      V+ FSS G 
Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     + I    ARG   +  + L +G+++ +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + + +     ++     +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             +GRN+ GV  I LA  + ++ +  V       DE +   +  +      +       +
Sbjct: 857 SLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESEPAAEA 916

Query: 775 LKNDS 779
             N+ 
Sbjct: 917 EGNEE 921


>gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
 gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans']
          Length = 886

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/895 (45%), Positives = 570/895 (63%), Gaps = 68/895 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LAEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILPLKDILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +IR  P P  A+  L+ RSW    +  ++D 
Sbjct: 367 IFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAMLDR 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +   L+ +I++EL+++K++ + PRRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIRILQNPDCLMEVIREELVAIKEQYNDPRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLESNERITAILPVREYE---EGRHVFMATASGTVKKTSLIEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSNEVMLFSAYGKVVRFPENQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+LA+GD+V+S+ +                                             
Sbjct: 723 GINLAEGDRVVSLIV--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V   
Sbjct: 738 --------PRGEGPILTVTQHGYGKRTAQAEYPTKSRATQGVISIKVSERN--GEVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            V+D DQI++++D GTL+R  V+E+ I  R T+GV +  TA+DE VV ++ + E 
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAQDEHVVGLQCVAEQ 842



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 88/253 (34%), Gaps = 15/253 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L  +   R  G     +   DE    DL        V+ FS+ G V
Sbjct: 646 VFMATASGTVKKTSLIEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEVMLFSAYGKV 703

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +    ++      A G   IN+   ++                     ++  T+HG  +
Sbjct: 704 VRFPENQVRSMGRTATGVRGINLAEGDR---------VVSLIVPRGEGPILTVTQHGYGK 754

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R   +++   +R+ +  + +       E++        + I++ T  G  VR  +S +  
Sbjct: 755 RTAQAEYPTKSRATQGVISIKVSERNGEVVGAVQVDDCDQIMMITDAGTLVRTRVSEV-S 813

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV  I  A+ + V+ +  V     D D          A   L+  D  +    
Sbjct: 814 IVGRNTQGVTLIRTAQDEHVVGLQCVAEQVDDDDLDSVVSPDALADDSLVDADDADEADN 873

Query: 776 KNDSSVEGNISEE 788
             +   + +   E
Sbjct: 874 GVEGDDDVDGERE 886


>gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
 gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91]
          Length = 848

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/904 (42%), Positives = 564/904 (62%), Gaps = 69/904 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH LL DL K+TVDF PNYDGS QEP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C+ ++ +PDID+  LM  I  PDFPT  +I G +GIK+ Y TGRG ++
Sbjct: 182 IPPHNISEVIDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIYGISGIKDGYQTGRGRVI 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+   G+R  I++ E+PYQVNKA +L +I ELVR+KRI  I+DLRDESD+ G 
Sbjct: 242 MRARTHFEELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T +Q  F +NMVAL   +P    L  +L  F+  R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKETQMQDTFGINMVALVDGQPRLLNLKQMLDYFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM R+W +S ++
Sbjct: 362 ITRRTVFELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKRGLMARTWRSSLVE 421

Query: 429 DLIDLIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +++      +     +              LS+ Q +AIL+LRL RLTGL ++ I +E  
Sbjct: 422 EMLRRAMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYK 481

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  +I++ L++L++  R+  II +EL ++K +   PRR+ +V    D+  ED I   DM
Sbjct: 482 EILDKIRDLLNMLANSERITAIIIEELTAIKGQFGDPRRSEVVIDAQDLSTEDLITPTDM 541

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+SH GY+K   L  Y+AQ+RGG+G+  +  R++DF+ +LFI +TH  +L FSSLG V
Sbjct: 542 VVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGRV 601

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P GS  +RG+ + N++ L Q E+I  ++P    +   +  YV  AT  G V+
Sbjct: 602 YWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFD---DTRYVFMATAGGTVK 658

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F +   +G IA+ LD  D ++ V     ++D++L +  G+ +RF  + +R   G
Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRP-TG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRG+ L    +VIS+ +                                      
Sbjct: 718 RNARGVRGMKLGAEQKVISLLVADS----------------------------------- 742

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +   +LT +E G+GKRTS  ++   NR  +G+ A + +K N  
Sbjct: 743 -----------------ENMTVLTATENGYGKRTSITEYTRHNRGTQGMIAINTNKRN-- 783

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA   V  ND+I+L++  G +IR  V+EIR   RAT+GV++ +    E++  +ERI 
Sbjct: 784 GKVVAAQLVEPNDEIMLITTGGVMIRTRVSEIREMGRATQGVILINLDAGEKLAGLERIV 843

Query: 899 ESEI 902
           E++ 
Sbjct: 844 ETDE 847



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/213 (21%), Positives = 96/213 (45%), Gaps = 14/213 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+ PLS +   R  G     V + + D++  + +      V+ FS  G 
Sbjct: 647 YVFMATAGGTVKKTPLSEFSRPRTNG--IIAVALDEGDYLIGVALTEGKHDVMLFSDAGK 704

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +   +      P  R    +  + L   +++ +++      +   N+ V+ AT++G  
Sbjct: 705 AMR---FDENDVRPTGRNARGVRGMKLGAEQKVISLL-----VADSENMTVLTATENGYG 756

Query: 658 RRNKLSDFIQINR--SGKIAMK-LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++ + NR   G IA+       ++++ +     ++I+L T  G  +R  +S IR
Sbjct: 757 KRTSITEYTRHNRGTQGMIAINTNKRNGKVVAAQLVEPNDEIMLITTGGVMIRTRVSEIR 816

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
              GR + GV  I+L  G+++  +  ++  D +
Sbjct: 817 EM-GRATQGVILINLDAGEKLAGLERIVETDEN 848


>gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
 gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3]
          Length = 877

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ I                                             
Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   +++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSAAEGDDDIAPEADT 868

Query: 771 EITSLKNDS 779
           +    +++ 
Sbjct: 869 DDDIAEDEE 877


>gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 896

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/908 (46%), Positives = 571/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D                        +S++    +   E       +SSV
Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEETDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 26/257 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+V L  +   R  G     + +R+ D +  + I    + ++ F
Sbjct: 643 FSADKFIFMATASGVVKKVSLDSFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------- 635
           S+ G V +     +      A G   I + + +                           
Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLD 760

Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689
                          ++  T++G  +R  + ++   +R+ K  + +   +   ++++   
Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + + I+L T  G  VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +
Sbjct: 821 VEETDQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879

Query: 750 ERICYMKHMSAQRRLIS 766
                    S +    +
Sbjct: 880 NSEALDNVESTETSTEA 896


>gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
 gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316]
          Length = 878

 Score =  926 bits (2394), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 572/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 ITEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEILSAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +I++EL  V+D+    RRT I     D+  ED I RED+VVT+SH 
Sbjct: 487 GLLHILGSADRLMEVIREELELVRDQFGDERRTEITANSSDINIEDLINREDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKENAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D V+S+ +                                             
Sbjct: 723 GIKLAGEDAVVSLIV--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAESEYPTKSRGTQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/430 (15%), Positives = 138/430 (32%), Gaps = 35/430 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E + ++R        RR  +  + + 
Sbjct: 470 EHEKLLDEYKELLEQIAGLLHILGSADRLMEVIREELELVR--DQFGDERRTEITANSSD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINREDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKENAVRAMGRTATGVRGI---------KLAGEDAVVSLIVPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   S++   +R  +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAESEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGTVAEGDDDIAPEAES 868

Query: 771 EITSLKNDSS 780
           +  ++ +   
Sbjct: 869 DDDAVDDADE 878


>gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
 gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5]
          Length = 910

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/912 (50%), Positives = 637/912 (69%), Gaps = 5/912 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    ++    +    V+I  EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTDTTDQTEGPSGQ--VPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR+ G+VMGKYHPHG+AAIYDA  RMAQ +S+R+ LI+GQGNFGSV
Sbjct: 59  QEAGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL  AA  LL D+ KDTVDF+P YD S  EP VL A +PN+LVNGG 
Sbjct: 119 DGDPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN  E++D  + +I  P+  LD LM I+ GPDFPTG +ILGR+GI++A
Sbjct: 179 GIAVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE+   DR  I+V+E+PYQVNKA +LE+IAELVR K I  IADLR
Sbjct: 239 FETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P +  L   L  
Sbjct: 299 DESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDC 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFRE+V++RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+  +AR  LM R
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ L++LIDD    I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G  I E L+I++SR R L +++ ELL+V+  +  PR T I + + D +DE  I    MVV
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL  +RAQ RGG+GR+   MR +D +T  F   TH  VLFFS  G  ++
Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  +P A+G+A++NIL    G+ +T ++P P+DES WN+L++VFAT  GNVRRN
Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +L+DF  +  +G IAMKLD  D ++ V TC + +D+ L T+  +C+RF I+   +RVFAG
Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+S GVRGI L  GD+VIS++++ H +A  DER  Y+K+ +AQRR    + E      ++
Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++ +  ++ ER   L+  E+ ILTV+  GFGK +S+Y++R++ R G+GI    ++  N  
Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            A+ A FPV   D I+LV+D+G LIR PV+++RI  R   GV +    KDE+V SV  + 
Sbjct: 839 -AVAASFPVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVL 897

Query: 899 ESEIVDEAESTE 910
           +    +  E  +
Sbjct: 898 DDSGDEAGEEQD 909


>gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624]
          Length = 890

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/918 (43%), Positives = 557/918 (60%), Gaps = 67/918 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  K    +S+ +EM+ SYL YA++VI+GRA+PD RDG KPVHRR+LF M ++  +WN+
Sbjct: 2   TEFAKETLPISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGDP AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH  L D+ K+TVDF PNYDGS +EP+VL  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLAKIAHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ V+ NP   +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHVLKNPGASIDELMEIIPAPDFPTAGIIYGMQGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK ++LE+IAELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL G +P+   L  ++  F+  R EV
Sbjct: 302 RVVIELKRGELPEVVLNNLYKQTQLQDTFGMNMVALVGGQPKLCNLKDLIVVFLDHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + + +DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRSRADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +  EI+  LDIL+   R+  I+ +EL  +K E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMAEIENLLDILARPERVAAIVGEELAGIKQEFGQTKLGARRSVVEHNAQDLA 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED VVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++P   E  S  ++ Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPEGSRNSRGRPIVNMFPLAEGEKITVVLPLTGEFSSFPSDHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT+ G V++  L +F    ++G IA+ LD+ D ++        +D++L +  G+ VR
Sbjct: 662 VFMATRMGTVKKTSLDEFNNPRKAGIIAVDLDAGDFLIGAALTDGRHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG+ L  G  VI+M +      +                    
Sbjct: 722 FDENDVRPM-GRNARGVRGMMLDDGQSVIAMLVAQDETQNDVNGEAARTS---------- 770

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           +LT +E G+GKRT   ++    R  KG+
Sbjct: 771 --------------------------------VLTATENGYGKRTPIAEYTRHGRGTKGM 798

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +   
Sbjct: 799 IAIQQSERN--GKVVAATLVHTDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIALDD 856

Query: 888 DERVVSVERIRESEIVDE 905
             ++  ++RI E++   E
Sbjct: 857 GTQLSGLQRIVENDANGE 874


>gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
 gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342]
 gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55]
          Length = 877

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ I                                             
Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   +++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDDDIAPEADT 868

Query: 771 EITSLKNDS 779
           +    +++ 
Sbjct: 869 DDDIAEDEE 877


>gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
 gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1]
          Length = 876

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/908 (42%), Positives = 565/908 (62%), Gaps = 67/908 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               K    +S+ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WNK
Sbjct: 2   TPFAKETLPISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ +  H LL D+ K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMARIGHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D C+ +++NPD D++ L+ +++ PDFPT A+I G +G+ + Y TGRG +V
Sbjct: 182 IPPHNLGEVLDACLKLLENPDTDIEELIALVKAPDFPTAALIYGLSGVHDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + I+V E+PYQVNK  +LE+IAELV EK+I  I+++RDESD+ G 
Sbjct: 242 MRARTHFEDLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN L++ T LQ  F +NMVAL   KP    L  +L  F++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGKPRTLNLKQMLDCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+R H+L GLA+A++N+DE++ +I+ +P P  A+R LM+R+W+++ ++
Sbjct: 362 ITRRTVFELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVE 421

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++     +SY   S             LS+ Q +AILELRL RLTGL +D I  E   +
Sbjct: 422 EMLARALAASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL++  R+  II +EL +++ + D PRR+ IV    ++  ED I  EDMVV
Sbjct: 482 MDVITDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIEDLIAPEDMVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY KR PL+ YRAQRRGG+G+    M+D+DF+  LF+ +TH  +L FSS G VY 
Sbjct: 542 TLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGRVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P G+  +RG+ ++N+  L +GE+I  ++P    +   ++ +V  AT  G V++ 
Sbjct: 602 LKVYEVPEGTRNSRGRPIVNLFPLMEGEKINAVLPVQAFD---DDHFVFMATAEGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F    ++G IA  LD  D ++ V      +D++L +  G+ VRFP   +R   GR 
Sbjct: 659 ALTAFSNPRKAGIIAANLDDGDRLIGVAITDGNSDVMLFSDAGKAVRFPEGDVRPM-GRE 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG++L +G +VI+M +                                        
Sbjct: 718 ARGVRGMNLEEGQRVIAMLVAKD------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +E  +LT +E G+GKRT   ++    R  KG+ A   S  N  G 
Sbjct: 741 ---------------EELSVLTATENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRN--GK 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V ++D+++L+S  G LIR  V +IR   RAT+GV + +  +   +  +E++ ES
Sbjct: 784 LVGACLVEESDEVMLISTGGVLIRTRVQDIRELGRATQGVTLINLDEGTSLAGIEKVAES 843

Query: 901 EIVDEAES 908
           E+ + A  
Sbjct: 844 EVDEPAAD 851



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 102/248 (41%), Gaps = 14/248 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G       + D D +  + I   ++ V+ F
Sbjct: 640 FDDDHFVFMATAEGTVKKTALTAFSNPRKAG--IIAANLDDGDRLIGVAITDGNSDVMLF 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   +N   L +G+R+  ++   +       L V+ AT
Sbjct: 698 SDAGKAVRFPEGDVRPMGREARGVRGMN---LEEGQRVIAMLVAKD-----EELSVLTAT 749

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R  K  + + + D   +++      + ++++L +  G  +R  
Sbjct: 750 ENGYGKRTPVAEYTRHGRGTKGMIAIQTSDRNGKLVGACLVEESDEVMLISTGGVLIRTR 809

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  IR   GR + GV  I+L +G  +  +  V  ++ D          ++      + D 
Sbjct: 810 VQDIREL-GRATQGVTLINLDEGTSLAGIEKVAESEVDEPAADVPDDGIAPADSEPAVDG 868

Query: 770 EEITSLKN 777
            +   L  
Sbjct: 869 MQTDDLPE 876


>gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
 gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301]
          Length = 910

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/912 (50%), Positives = 637/912 (69%), Gaps = 5/912 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    ++    +    V+I  EM+ SYL YA++VI+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTDTTDQTEGPSGQ--VPVTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR+ G+VMGKYHPHG+AAIYDA  RMAQ +S+R+ LI+GQGNFGSV
Sbjct: 59  QEAGNTPDKPYRKSARMVGDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL  AA  LL D+ KDTVDF+P YD S  EP VL A +PN+LVNGG 
Sbjct: 119 DGDPPAAMRYTEARLADAAMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN  E++D  + +I  P+  LD LM I+ GPDFPTG +ILGR+GI++A
Sbjct: 179 GIAVGMATNIPPHNPAEIIDATLHLIAQPEATLDDLMRIVPGPDFPTGGIILGRSGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE+   DR  I+V+E+PYQVNKA +LE+IAELVR K I  IADLR
Sbjct: 239 FETGRGGIVVRARTSIEEIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELKR A+ +V+LN LYR+T +Q+ F +NM+AL+G +P +  L   L  
Sbjct: 299 DESDREGMRMVIELKRDATPEVVLNHLYRFTQMQTGFGINMLALDGGRPRQLGLRDALDC 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFRE+V++RR+++ LNKARDRAH+LVGL IAVAN+DEV+ +IR +P+  +AR  LM R
Sbjct: 359 FIAFREDVILRRSRFELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A D++ L++LIDD    I +DGT+ L+E Q R ILELRL RLTGL R+ I++EL  +
Sbjct: 419 DWPAGDVRPLLELIDDHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV 478

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
           G  I E L+I++SR R L +++ ELL+V+  +  PR T I + + D +DE  I    MVV
Sbjct: 479 GRRIGELLEIIASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQDDESLIEPGQMVV 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL  +RAQ RGG+GR+   MR +D +T  F   TH  VLFFS  G  ++
Sbjct: 539 TMTRDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAFR 598

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  +P A+G+A++NIL    G+ +T ++P P+DES WN+L++VFAT  GNVRRN
Sbjct: 599 EKVWRLPESAPAAKGRAIVNILPELNGDAVTAVLPLPQDESLWNDLHLVFATASGNVRRN 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +L+DF  +  +G IAMKLD  D ++ V TC + +D+ L T+  +C+RF I+   +RVFAG
Sbjct: 659 RLADFRNVRSTGLIAMKLDDGDRLIGVATCREGDDVFLATRQARCIRFQITDDTLRVFAG 718

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+S GVRGI L  GD+VIS++++ H +A  DER  Y+K+ +AQRR    + E      ++
Sbjct: 719 RDSSGVRGIRLGAGDEVISLSVLRHVEASVDERAAYLKYAAAQRRAGGEEGELDAVESDE 778

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           ++ +  ++ ER   L+  E+ ILTV+  GFGK +S+Y++R++ R G+GI    ++  N  
Sbjct: 779 AAADIQLTPERIAALQSAEEMILTVTTGGFGKLSSAYEYRVTGRGGQGIANIALAARNGR 838

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            A+ A FPV   D I+LV+D+G LIR PV+++RI  R   GV +    KDE+V SV  + 
Sbjct: 839 -AVAASFPVRPGDDIMLVTDQGKLIRAPVDQVRITGRQAMGVTLVRVEKDEQVTSVFPVL 897

Query: 899 ESEIVDEAESTE 910
           +    +  E  +
Sbjct: 898 DDGGDEAGEEQD 909


>gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20]
 gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 896

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/908 (46%), Positives = 572/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D                        +S++    +   E      ++SSV
Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEADESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 26/257 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+V L  +   R  G     + +R+ D +  + I    + ++ F
Sbjct: 643 FSADKFIFMATASGVVKKVSLDAFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645
           S+ G V +     +      A G   I + + +            E E+   +       
Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLD 760

Query: 646 -------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689
                          ++  T++G  +R  + ++   +R+ K  + +   +   ++++   
Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + + I+L T  G  VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +
Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879

Query: 750 ERICYMKHMSAQRRLIS 766
                    S +    +
Sbjct: 880 NSEALDNVESTETSTEA 896


>gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 889

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/885 (53%), Positives = 619/885 (69%), Gaps = 10/885 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SITDEM+NSYL YA++VI+ RAIPDLRDGLKPVHRRILF M ++G   +K Y K AR  
Sbjct: 1   MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG++AIYDALARMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K 
Sbjct: 61  GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A ++L D+ KDTVDF+ NYDG  +EP VL  R+PN+LVNG GGIAVGMATNIP HNLGEV
Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           VD  +A+IDNPD+ ++ L++ + GPDFPTG V+LGR+G + AY  GRGS +IR  +H+E+
Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLLGRSGARKAYTEGRGSCIIRAKTHVEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR  IV+ EIPYQVNK+AM+EKIAE VREK+I  I+ ++DESDR G RVV+ELKR A
Sbjct: 241 LRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LNQL+R+T +Q+ F  NM+ALNG +PE  TL G L  F++FREEVV RRT YLL 
Sbjct: 301 TPDVVLNQLFRFTPMQTYFGCNMLALNGGRPETLTLYGFLSNFISFREEVVARRTAYLLR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM R W A +I   I LIDD +
Sbjct: 361 KARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLIDDPT 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  DGT  LSE Q RAILELRL RLT LG  ++ +EL  L  +IKE L+IL SR R++
Sbjct: 421 HRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRERIM 480

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            II  EL  VK+    PRRT IV+   DMEDED I R +MVVT++  GY+KR PL  YRA
Sbjct: 481 QIISDELREVKELFAVPRRTEIVDWSGDMEDEDLIERAEMVVTITQSGYIKRTPLEDYRA 540

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG SG+  +D+D VT LF+ +THT +LFF++ G VYK K WRLP+G   ++GKA+
Sbjct: 541 QKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSKGKAI 600

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +NIL +  G  I  IMP   DE  W +L +VFAT  G VRRN LSDF  +  +GKIAMK 
Sbjct: 601 VNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTNVKSNGKIAMKF 660

Query: 679 ---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
              +    +++   C  E+D++L T+ G+ +RF    +RVF  R+SVGVRG+ L + D+V
Sbjct: 661 EGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDVRVFNSRSSVGVRGVRLNEKDEV 720

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            SM ++    A+ DER  Y+K   A          E T+ + + + +  + ++R  E+  
Sbjct: 721 ASMFVLPTFPAESDERASYLKMRRAM-----AGDVEQTTDEEEGNADMPLPQDRYAEMSA 775

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  ILT++  G G  +SS+D+ +  R G G+ A +  K    G ++A FPV  +DQ++L
Sbjct: 776 AETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWE--KTMRTGEIIAAFPVEMDDQVML 833

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + KG  IRVPV+ I   SR+  GV +F+T K E VVSV RI E 
Sbjct: 834 ATSKGQSIRVPVDGISFRSRSAGGVRVFNTGKGETVVSVARIAEQ 878


>gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
 gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille]
          Length = 873

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/924 (43%), Positives = 571/924 (61%), Gaps = 78/924 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +M   WN+
Sbjct: 2   DQFAKETIPISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VKCAR+ GE MGKYHPHG+A+IYD L RMAQ +SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  PFVKCARVVGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL K A  LL DL K+TVDF PNYDG  +EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTECRLDKIAGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG + V+ N D  +D L+EII  PDFPTG +I G +G+++ Y TGRG +V
Sbjct: 182 IPPHNITEVIDGALHVLRNADATVDELIEIIPAPDFPTGGIIYGVSGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +R  I+V E+PYQVNK ++LE+IAELVR+K++  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEEFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR    +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F++ R EV
Sbjct: 302 RVVIELKRNEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLLNLKQMLECFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A+ +LM R+W++S ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAKVDLMSRAWDSSVVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++    +                 Y I +DG   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARTGEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
            NE   +  +I + LDIL+   R+  II  EL   K+E        RR+ I     D+  
Sbjct: 482 VNEYKEVMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSTIELNATDLGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  +DMVVT+SH GY+K  P+S YRAQ+RGG+G+  +  +D+D++  LFI +TH  +
Sbjct: 542 EDLITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYI 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G +Y  KVW +P GS  +RGK ++N+  L  GE+IT I+P   E+ +   + Y+
Sbjct: 602 LCFSNRGRLYWLKVWEVPQGSRNSRGKPIVNMFPLQDGEKITVILPISGENRTFPEDHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++  LSDF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMATSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDFLIGAALTDGKHDVMLFSDSGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +G QVI++ +  +                         
Sbjct: 722 DENDVRPM-GRTARGVRGMNLEEGQQVIALLVAEN------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      ++Q +LT +E GFGKRT   ++    R  KG+ 
Sbjct: 756 ---------------------------EQQSVLTATENGFGKRTPITEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V+ +D+I+L++  G LIR  V EIR   RAT+GV + +    
Sbjct: 789 AIQTSERN--GKVVAATLVDASDEIMLITTGGVLIRTRVAEIREMGRATQGVTLIAVEDG 846

Query: 889 ERVVSVERIRES--EIVDEAESTE 910
            ++  ++RI ES  E+ D+   TE
Sbjct: 847 TKLSGLQRILESDVEVDDDQSGTE 870


>gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
 gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi]
          Length = 902

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 636/894 (71%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I++AF+ FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 ELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L +GE IT IMP P +     N  +VF T +GN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLAEGETITNIMPLPSEN--DENQNIVFTTAYGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + + L+T+ G+ +RF +S +R F  RNS GVRGI LAK 
Sbjct: 660 KIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A+R L +     I S    +  +  I  E   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++RI+NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 18/232 (7%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D V   +  G   R  +S  R              R+ D V  + +    + +      G
Sbjct: 681 DHVFLSTRFGKSIRFVVSDVRQ----------FKSRNSDGVRGIKLAKNDSVISMTILNG 730

Query: 597 FVY----KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
                  KE   ++P+               L +      I      + + N  +++  T
Sbjct: 731 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 790

Query: 653 KHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R    ++   NR G      +       +++     Q ++I+L T  G+ +R  
Sbjct: 791 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRIS 850

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           ++ IR  AGR++ GV        ++V+S+A +   D+  D        +S+Q
Sbjct: 851 VNDIR-IAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEVENSISSQ 901


>gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c]
 gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c]
          Length = 893

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +               +  L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                    +    E   +  +D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                      +     ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 761 NTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   +   +       S                  +          +  ++   + 
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+T   +F    R  +G  A ++   ++  AL+ V   +    ++L +  G  +R 
Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
 gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62]
          Length = 923

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/906 (51%), Positives = 625/906 (68%), Gaps = 14/906 (1%)

Query: 1   MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++   + +++            +SITDEM+ SYL YA++VI+ RAIPDLRDGLKPVHRR
Sbjct: 1   MSDTPDTPEDDNAPAPYVYDGPQISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M + G   +K Y K AR  G+VMGKYHPHG+ AIYDAL RMAQD+S+ L L++GQG
Sbjct: 61  ILYAMYETGNSHDKSYRKSARPVGDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE R+ K A F+L D+ KDTVDF+ NYDG  +EP VL +R+PN+L
Sbjct: 121 NFGSMDGDNAAAMRYTEVRMDKPAAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNML 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  + L+E + GPDFPTG ++LGR+
Sbjct: 181 VNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLSSEDLIEYVPGPDFPTGGIMLGRS 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + AY  GRGS+++R  + +E+   DR  I++ EIPYQVNKA M+EKIAE VREK+I  
Sbjct: 241 GARKAYLEGRGSVIVRAKTRVEEIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+ ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG +PE+ TL 
Sbjct: 301 ISHVQDESDRNGVRVVVELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGRPEQLTLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L +FV FREEVV RRT + L KAR+R+H+L GLA+AV N+DE+V  IR S +   AR 
Sbjct: 361 RFLTSFVDFREEVVARRTAFELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R W A  I + I+LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++ +
Sbjct: 421 KLMTRRWPAESILEYIELIDDPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTD 480

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +I++ L+IL SR R++ II+ EL  V+D+   PRRT IV+   DM+DED I R
Sbjct: 481 ELQELAGKIRDYLEILGSRERIMQIIRDELHEVRDQFAVPRRTAIVDWSGDMDDEDLIER 540

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMVVTV+  GY+KR PL+ +RAQRRGGKG  G+  ++ED VT LF+ +THT +LFF++ 
Sbjct: 541 EDMVVTVTSGGYIKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTD 600

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  YK K WRLP GS  ++GKA++NIL +  G  +  I+P   DE  W +L V FAT  G
Sbjct: 601 GMAYKLKTWRLPQGSRTSKGKAIVNILPMPVGASVAAILPIDRDEKDWADLQVTFATSAG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISA 712
            VRRN LSDF  +  +GKIAMK +      ++++V     ++D++L T  G+ +RF  + 
Sbjct: 661 TVRRNALSDFTNVKSNGKIAMKFEGEHAETKLINVRITAPDDDVMLVTNSGRAIRFRAND 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF  R S GVRGI L   D V+SM+++ H +AD  ER  Y+K     RR ++G  ++ 
Sbjct: 721 VRVFNSRASTGVRGIKLNGDDTVVSMSVIRHFEADPAERAAYLK----MRRAMAGLADDA 776

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               +D+   G +S+ER  E+   E  ILT++ +G GK +SS+D+ +  R G G+ A D 
Sbjct: 777 EVDDDDAVEAGQLSQERYAEMSAAENLILTITAQGAGKLSSSHDYPLRGRGGMGVTAMD- 835

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K    G +V  FPV+ +DQI+LV+++G  IRVPV  I   SR+  GV +F T K+E V+
Sbjct: 836 -KAMRGGEIVTSFPVDIHDQIMLVTNQGQSIRVPVEGISFRSRSAGGVKVFDTGKNEMVM 894

Query: 893 SVERIR 898
           SV  I 
Sbjct: 895 SVAWIA 900


>gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
 gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99]
          Length = 878

 Score =  926 bits (2393), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 ITEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D++             DG  +L+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFAESAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +     A                                       
Sbjct: 723 GIKLAEGDRVVSLIVPRDDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 744 --------------IMTVTQNGYGKRTANAEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 93/241 (38%), Gaps = 15/241 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R  G     V +RD+D +  + +       + FS+ G V +  
Sbjct: 650 TASGTVKKTALTEFSRPRSAG--IIAVNLRDDDELIGVSLTDGSDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+R+ +++         ++  ++  T++G  +R   
Sbjct: 708 ESAVRAMGRTA---SGVRGIKLAEGDRVVSLI------VPRDDGAIMTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 AEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV  I  A+ + V+ +  V    A+ +              +         + + D 
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGSLAEGDEDIAPEVDAHDEAPEADD 877

Query: 780 S 780
            
Sbjct: 878 E 878


>gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895]
          Length = 878

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LKEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D V+S+ I                                             
Sbjct: 723 GIKLAGEDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT+  ++   +R  +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAEGEYPTKSRGTQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDADQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/418 (15%), Positives = 131/418 (31%), Gaps = 39/418 (9%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR     +       + + N+
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRD----QFGDERRTEITANS 525

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +DI     +  +      S         L++ + +       +       D I   L + 
Sbjct: 526 ADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 585

Query: 481 GIE---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
             +             + +        G   + ++++       R T I+      E  +
Sbjct: 586 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN 645

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                  V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ 
Sbjct: 646 -------VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGSDEVML 696

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G V + K   +      A G   I         ++                 ++  
Sbjct: 697 FSAAGKVVRFKEDAVRAMGRTATGVRGI---------KLAGEDSVVSLIIPRGEGAILTV 747

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R    ++   +R  +  + +        ++        + I++ T  G  VR 
Sbjct: 748 TQNGYGKRTAEGEYPTKSRGTQGVISIKVTERNGSVVGAVQVDDADQIMMITDAGTLVRT 807

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +S I    GRN+ GV  I  A+ + V+ +  V     D +              +  
Sbjct: 808 RVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDSIDGSVAEGDEDIAP 864


>gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 896

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 423/916 (46%), Positives = 576/916 (62%), Gaps = 43/916 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D                        +S++    +   E      ++SSV
Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEADESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEA-------ESTE 910
             DE        ESTE
Sbjct: 876 DEDENGEALDNVESTE 891



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 95/257 (36%), Gaps = 26/257 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+V L  +   R  G     + +R+ D +  + I    + ++ F
Sbjct: 643 FSADKFIFMATASGVVKKVSLDAFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645
           S+ G V +     +      A G   I + + +            E E+   +       
Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEADESSVSLD 760

Query: 646 -------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689
                          ++  T++G  +R  + ++   +R+ K  + +   +   ++++   
Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + + I+L T  G  VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +
Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879

Query: 750 ERICYMKHMSAQRRLIS 766
                    S +    +
Sbjct: 880 NGEALDNVESTETSTEA 896


>gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
          Length = 893

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTHMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +               +  L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL S   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                    +    E   +  +D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                      +     ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 761 NTADSVHIGPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   +   +       S                  +          +  ++   + 
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+T   +F    R  +G  A ++   ++  AL+ V   +    ++L +  G  +R 
Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22]
 gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22]
          Length = 877

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ I                                             
Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   +++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDDDIAPEADT 868

Query: 771 EITSLKNDS 779
           +    +++ 
Sbjct: 869 DDDIAEDEE 877


>gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
 gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148]
          Length = 886

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/901 (46%), Positives = 557/901 (61%), Gaps = 68/901 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R L+++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K +H +L DL K+TVDF  NYDG+ + P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMKKISHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A++ +PD+ +D LME I GPDFPTGA+I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVVSGCLALLGDPDLTVDELMEHIPGPDFPTGAIINGRAGIIQAYRTGRGRIYVRAR 245

Query: 254 SH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +  I      ++ I+V EIPYQ+NKA ++E+IAELV+EK+I  I +LRDESD+ G RVVI
Sbjct: 246 AEVIHDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   DV+LN LY  T LQS+F +NMVAL   +P+   L  IL+AFV  R EVV RR
Sbjct: 306 ELRRGEVGDVVLNNLYAQTQLQSVFGINMVALVDGQPKILNLKEILEAFVRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLAIA+AN+D V+ +I+ SP+   A+ +L+ RSW   D+  +++
Sbjct: 366 TVYLLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             DG  YLS  Q +AILELRL RLTGL  + + NE      EI
Sbjct: 426 RAGDDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLREI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+ILS   RL  +I++EL  +  E    RRT I     D+  ED I  ED VVT+SH
Sbjct: 486 AEYLEILSDADRLKAVIREELEEIVTEYGDERRTEITASQHDLTVEDLITEEDRVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y+AQRRGG G+S   ++DEDFV  L I STH ++L FS+LG VY  KV+
Sbjct: 546 GGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+    +RG+ +IN+L L +GER+T+I+P  +        Y+  AT  G V++  L +
Sbjct: 606 QIPLAGRNSRGRPMINLLPLEEGERVTSILPVEDYT---EGHYIFMATASGTVKKTALIN 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G  A++L+  D ++     T + D++L +  G+ VRF    +R   GR + GV
Sbjct: 663 FARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  G ++IS+ I                                            
Sbjct: 722 RGIKLGDGHEMISLII-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      +   +LTVSE G+GKRT   +F    R  KG+ A   S+ N  G LV  
Sbjct: 738 ---------PREGGRVLTVSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERN--GTLVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D DQ++L+S++GTL+R   +EI +  R T+GV +  T  DE +VSVERI E E  D
Sbjct: 787 VQVFDGDQLMLISNQGTLVRTRADEISVLGRNTQGVRVIRTKTDESLVSVERIEEPEDDD 846

Query: 905 E 905
           E
Sbjct: 847 E 847



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 15/260 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +       +   +  G VK+  L  +  QR  G     + + + D +    + +    V+
Sbjct: 638 EDYTEGHYIFMATASGTVKKTALINFARQRSVG--LRALELEEGDVLVGTAVTTGDCDVM 695

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             SS G   + K   +      ARG   +  + L  G  + +++             V+ 
Sbjct: 696 LLSSEGKAVRFKEGDVRAMGRTARG---VRGIKLGDGHEMISLI------IPREGGRVLT 746

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
            +++G  +R ++S+F    R  K  + + + +     +        + ++L +  G  VR
Sbjct: 747 VSENGYGKRTEMSEFPTKGRGTKGVIAMQTSERNGTLVGAVQVFDGDQLMLISNQGTLVR 806

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                I V  GRN+ GVR I     + ++S+  +   + D +     +     +    + 
Sbjct: 807 TRADEISVL-GRNTQGVRVIRTKTDESLVSVERIEEPEDDDELATEALSEGVDETAAPAA 865

Query: 768 DTEEITSLKNDSSVEGNISE 787
             ++     +    E    +
Sbjct: 866 TEDDQGEQASPQEPEEPEED 885


>gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12]
 gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon]
 gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1]
 gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12]
          Length = 893

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +               +  L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILENPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                    +    E   +  +D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                      +     ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 761 NTADSVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   +   +       S                  +          +  ++   + 
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+T   +F    R  +G  A ++   ++  AL+ V   +    ++L +  G  +R 
Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 907

 Score =  926 bits (2392), Expect = 0.0,   Method: Composition-based stats.
 Identities = 476/911 (52%), Positives = 630/911 (69%), Gaps = 14/911 (1%)

Query: 1   MTEHIISSDE----EEEKGITS---VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++   + +       ++ +     VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPETPENMDETPPDRPVYDGPTVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILYAMHETGNTHDKAYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A  LL D+ K+TVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAASLLADIEKETVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  + L+E + GPDFPTG V+LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTSEQLIEYVPGPDFPTGGVMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  +  E+   DR  IVV EIPYQVNKA+M+EKIAE VREKRI
Sbjct: 241 RSGARKAYLEGRGSVIIRAKTRTEEIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             +A ++DESDR G RVV+ELKR A+ +V+LNQLYR++ +Q+ F  NM+ALNG +PE+ T
Sbjct: 301 EGVAHVQDESDRNGVRVVVELKRDATPEVVLNQLYRFSPMQTSFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L +F+ FRE+VV RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRRFLTSFIDFREDVVARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W AS+I+  + LIDD    +  DGT  L+EVQ RAIL+LRL RLT +G  ++
Sbjct: 421 REKLMTRRWPASEIEGYLRLIDDPLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE LDILSSR R++ II  EL SV+++   PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAAKIKEYLDILSSRERIMSIIGDELRSVREQFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF+
Sbjct: 541 EREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP  S   +GKA++NIL +  G  I  IMP    +  W NL +VFAT 
Sbjct: 601 TDGMVYKLKTWRLPQSSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G+VRRN+LSDF  + R+GKIAMKL    E+++   C+++ D++L T  G+ +RF  + +
Sbjct: 661 AGDVRRNRLSDFTNVRRNGKIAMKLPEDVELVNARICSEDEDVMLVTNSGRAIRFRTTDV 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           RVF  R S GVRGI L  GD V+SM+++ H +AD DER  Y+K   A   +      +  
Sbjct: 721 RVFNSRESTGVRGIKLTNGDHVVSMSVIRHFEADPDERAAYLKMRRAVAGIA-----DDG 775

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
               D +  G+IS+ER  ++   E  ILT++  G GK +SS+D+ +  R G G+ A D  
Sbjct: 776 ETDEDEATPGSISQERYAQMSAAENLILTITSGGSGKLSSSHDYPVRGRGGMGVAAMD-- 833

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LVA FPV+ +DQI+L + KG  IRVPV+ I   SR+  GV +F+T K E VVS
Sbjct: 834 RAMRGGELVASFPVDLDDQIMLATSKGQSIRVPVDGISFRSRSAGGVKVFNTGKGEEVVS 893

Query: 894 VERIRESEIVD 904
           V  I +    +
Sbjct: 894 VAWIADQGEEE 904



 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R+    F    R+  +    D  DE    +   +E+ ++  T  G   R P++  R    
Sbjct: 513 RSVREQFAVPRRTEIVDWSGDMEDE----DLIEREDMVVTVTSGGYIKRTPLADFRAQK- 567

Query: 719 RNSVGVRGISLAKGDQVISMAIVLH------ADADYDERICYMKHMSAQRRLISGDTEEI 772
           R   G+ G+   + D V ++ +            D          +    R   G     
Sbjct: 568 RGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSSRTGKGKAIVN 627

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                       I      + + +   I+  +  G  +R    DF    R+GK   A  +
Sbjct: 628 ILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTNVRRNGK--IAMKL 685

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERV 891
            +      LV     ++++ ++LV++ G  IR    ++R+  SR + GV        + V
Sbjct: 686 PE---DVELVNARICSEDEDVMLVTNSGRAIRFRTTDVRVFNSRESTGVRGIKLTNGDHV 742

Query: 892 VSVERIRESEIVDEA 906
           VS+  IR  E   + 
Sbjct: 743 VSMSVIRHFEADPDE 757



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             E+++      ++ I+L T  GQ +R P+  I  F  R++ GV+  +  KG++V+S+A 
Sbjct: 838 GGELVASFPVDLDDQIMLATSKGQSIRVPVDGI-SFRSRSAGGVKVFNTGKGEEVVSVAW 896

Query: 741 VLHADADYDE 750
           +     +  E
Sbjct: 897 IADQGEEETE 906


>gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23]
 gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1]
 gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23]
          Length = 893

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/908 (44%), Positives = 559/908 (61%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDG+KPVHRR+L+ M ++G   +K 
Sbjct: 3   ETAKEIIKVNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++YD L RMAQ +SLR LL+EGQGNFGSVDGDP AA RY
Sbjct: 63  YFKSARIIGEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + +H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRISHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP++D+D LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLVESINACIALIDNPELDIDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EKRI  I++LRDESD+ G R+
Sbjct: 243 RAKADIEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  IL+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ SP+P+ A+  L+ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +               +  L+EVQ R ILE+RL RLTGL +D +  E   L  
Sbjct: 423 LSASGGEASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL S   LL +I+ ELL +++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 IIVGLIRILESPDVLLQVIRDELLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQ+RGG+GR+ V  ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLS 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GE++  ++P  E      N YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYA---ENHYVFFATRQGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     E D+LL    G+ VRF  + +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L +G++V+S+ I   A                    +    E   +  +D    
Sbjct: 719 GVRGIKLTEGEEVVSLIIAEPA------------------TGVDMLEEAEETADDDIQTA 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                      +     ILT +E G+GK T    +    R  +G+     ++ N  G LV
Sbjct: 761 NTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQGVIGIQTTERN--GRLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
           A   +   D+++L+SD GTL+R   +EI    R T+GV +   +  E++ +VER+  S  
Sbjct: 819 AAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNGEKLQAVERLDASLS 878

Query: 902 IVDEAEST 909
           I DE E  
Sbjct: 879 IPDETEDD 886



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  +  G   R P+SA R    R   G   ++  + D +  + +V   D   
Sbjct: 532 LIAPEDVVVTLSHAGYAKRQPVSAYRAQK-RGGRGRAAVTTKEEDFIDHLWLVNTHDTLL 590

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   +   +       S                  +          +  ++   + 
Sbjct: 591 TFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVREYAENHYVFFATR 650

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+T   +F    R  +G  A ++   ++  AL+ V   +    ++L +  G  +R 
Sbjct: 651 QGTVKKTPLSEFAF--RLARGKIAINL---DQGDALIGVALTDGERDVLLFASNGKTVRF 705

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             N +R   R   GV      + E VVS+     +  VD  E  E
Sbjct: 706 SENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVDMLEEAE 750


>gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45]
 gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45]
          Length = 915

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 478/920 (51%), Positives = 632/920 (68%), Gaps = 16/920 (1%)

Query: 1   MTEHIISSDEEEEKGITS--------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           MT+     + ++E             +SI DEM++SYL YA++VI+ RAIPDLRDGLKPV
Sbjct: 1   MTDTPEPPENDDEMSGPERPRYSGPGISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ + + G   +K Y KCA   G+VMG+YHPHG++A+YDAL RMAQD+S+ L LI+
Sbjct: 61  HRRILYTLWENGQTKSKSYRKCATAVGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS+DGDPPAA RYTE RL++ A  LL+D+ KDTVDF PNY     EPVVL ARYP
Sbjct: 121 GQGNFGSMDGDPPAAYRYTESRLERTAEALLEDIDKDTVDFVPNYANERNEPVVLPARYP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           NVLVNG  GIAVGMAT IP HNLGEV+D  +A+I+ PD+  + L+E I  PDFPTG VIL
Sbjct: 181 NVLVNGAEGIAVGMATRIPPHNLGEVIDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+G + AY  GRGS++IR  + IE+   DR  IV+ EIPYQVNKA M+E+IAE VR+K+
Sbjct: 241 GRSGARKAYLEGRGSVIIRAKTRIEEIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  IA ++DESDR G RVV+ELKR A+A+V+LNQL+R+T +Q  F  NM+ALNG +PE+ 
Sbjct: 301 IEGIAHVQDESDRSGVRVVVELKRDATAEVVLNQLFRFTPMQVSFGCNMLALNGGRPEQL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL   L AF+ FRE+VV RRT YLL KAR+R+H+L GLA+AVAN+DEVV  IR S +   
Sbjct: 361 TLRAFLTAFLDFREDVVARRTAYLLRKARERSHILCGLAVAVANVDEVVATIRASADAAE 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM R W A +I   I LIDD ++ +  DGT  LSE Q RAILELRL RLT LG  +
Sbjct: 421 ARDKLMTRRWPAHEIAPYIQLIDDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKE 480

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           + +EL  L  +IKE L+IL SR R++ II  E+++VK++   PRRT I +   DM+DED 
Sbjct: 481 VTDELEELAKKIKEYLEILGSRERIMEIITNEMIAVKEQFAVPRRTEIADWAGDMDDEDL 540

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG  ++++D VT LF+ +THT +LFF
Sbjct: 541 IEREDMVVTVTAGGYIKRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFF 600

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G  YK K WRLP G   ++GKA++NIL + QG  +  IMP   DE  W++L +VFAT
Sbjct: 601 TTEGMAYKLKCWRLPQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFAT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
             G+VRRN+LSDF  + R+GKIAMK +  DE    ++   C++++DI+L T  G+ +RFP
Sbjct: 661 SKGSVRRNRLSDFTNVMRNGKIAMKFEGEDENTRLINARICSEDDDIMLVTDSGRAIRFP 720

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RVF  RNS GVRG+ L  GD+V+SM+++ H +A+ DER  Y+K   A   L     
Sbjct: 721 VPDVRVFNSRNSTGVRGVRLLNGDEVVSMSVIRHFEAESDERASYLKMRRAMAGLA---D 777

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +  TS + + + +  +S+ER  E+   E  ILT++ KG GK +SS+D+ I  R G G+ A
Sbjct: 778 DAETSDEEEGNADSRLSQERYAEMTAAENLILTITAKGLGKLSSSHDYPIRGRGGMGVTA 837

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            + S     G +VA FPV   DQI+L +  G  IRVPV+ I   SR   GV +F+T   E
Sbjct: 838 WEKSMR--GGEIVASFPVEKGDQIMLATSTGQSIRVPVDGISFRSRGAGGVRVFNTRAGE 895

Query: 890 RVVSVERIRESEIVDEAEST 909
            VVSV  I +    DE    
Sbjct: 896 TVVSVAWIADQGDEDEDAEA 915


>gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
 gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           drancourtii LLAP12]
          Length = 871

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/906 (45%), Positives = 573/906 (63%), Gaps = 70/906 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+ C+A++DNP++ LD +MEII GPDFPT A+I GR GI   Y TG+G +VIR  
Sbjct: 186 NLTEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAIINGRAGIIQGYRTGKGRVVIRAR 245

Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE     +R+ I++ E+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR   ADVILN LY +T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 EIKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A+  L+ ++W    +K +++
Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               ++             D    LS  Q +AILELRL RLT L +D I  E   L I I
Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           KE LDIL+S  RL+ +I+ ELL +K +    RRT I     D+  ED I  E++VVT+SH
Sbjct: 486 KELLDILASPERLMQVIRDELLEIKTQFGDERRTEITASQEDLTIEDLITEENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y+AQRRGGKG+S   ++DEDFV+ L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  +RG+ +INIL L +GE I  ++P  E        YV  AT++G V++  L+ 
Sbjct: 606 QLPLASRISRGRPIINILPLAEGEEINAMLPVREY---QEGFYVFMATRNGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ LD  D ++ V+      DI+L T  G+ +RF  S +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLDENDRLVGVDITDGTRDIMLFTDAGKVIRFDESKVRP-TGRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + +   VIS+ +                                            
Sbjct: 722 RGIRIEEDQAVISLIVAHPNGT-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +E G+GKRT   ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 744 ---------------ILTATEHGYGKRTDIDEYRVSGRGGQGVISIQVTERN--GKVVRS 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VND+D+ +L++DKGTL+R  V+E+ I  R T+GV + + +  E VV +++I   ++ D
Sbjct: 787 VQVNDSDEAMLITDKGTLVRFRVSELSIIGRNTQGVRLINVSSGELVVGMQKI--EDLGD 844

Query: 905 EAESTE 910
           E++  +
Sbjct: 845 ESDELD 850



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 88/236 (37%), Gaps = 15/236 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+VPL+ +   R  G     +   D     D+        ++ F+  G 
Sbjct: 645 YVFMATRNGTVKKVPLNAFSRPRSNGIIAVDLDENDRLVGVDI--TDGTRDIMLFTDAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +    ++      ARG   I         RI           +  N  ++ AT+HG  
Sbjct: 703 VIRFDESKVRPTGRTARGVRGI---------RIEEDQAVISLIVAHPNGTILTATEHGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + ++    R G+  + +       +++        ++ +L T  G  VRF +S + 
Sbjct: 754 KRTDIDEYRVSGRGGQGVISIQVTERNGKVVRSVQVNDSDEAMLITDKGTLVRFRVSEL- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              GRN+ GVR I+++ G+ V+ M  +     + DE        S        D  
Sbjct: 813 SIIGRNTQGVRLINVSSGELVVGMQKIEDLGDESDELDVDTDEASDIGNSDEHDDN 868


>gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 923

 Score =  925 bits (2391), Expect = 0.0,   Method: Composition-based stats.
 Identities = 504/914 (55%), Positives = 649/914 (71%), Gaps = 14/914 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E + ++          V+I DEM+ SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M
Sbjct: 1   MDEDLPAAPSGPM-----VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K A + G+VMG+YHPHG++AIYDALARMAQ +S+ L L++GQGNFGS+
Sbjct: 56  HEGGYSKDKAYKKSANVVGDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSM 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+   A  LL D+ KDTV+FR NYDGS QEPVVL ARYPN+LVNG G
Sbjct: 116 DGDPPAAMRYTEIRMDHPAEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAG 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD  VA++D PDI    L+E +  PDFPTG  I+GR+G + A
Sbjct: 176 GIAVGMATNIPPHNLNEVVDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
              GRGS+++R  + IE     RE I+V EIPYQVNKA M+EKIAELVR+KRI  I+DLR
Sbjct: 236 LLEGRGSVILRAKTSIEDIRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELK+ A+A+VILNQLYR++ LQ+ F VNM+AL G +P++  L   L+ 
Sbjct: 296 DESDRSGVRVVIELKKDANAEVILNQLYRWSPLQTSFGVNMLALIGGRPQQAGLRVFLET 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+EVVVRRTK+ L KARDRAHVL+GLA+AVAN+DE++ +IR +P+P+TAR++L  +
Sbjct: 356 FIHHRKEVVVRRTKFDLRKARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W A D+  L++L+ D    I  DG + L+E Q +AIL+LRL RLT LGRD+I +E N L
Sbjct: 416 AWPAKDVAPLVELVADPRSQI-RDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKL 474

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL S +R+  II+ ELL  K      RR+ I+EG L +EDED I REDMVV
Sbjct: 475 AETIADLLDILRSPTRIRDIIRNELLDSKASFGVERRSAIIEGDLGIEDEDLIPREDMVV 534

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GYVKR  LS YRAQ RGGKGR+G+ M+DEDFV  LF+ STH  +LFFSS G VYK
Sbjct: 535 TLTHGGYVKRTALSTYRAQNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYK 594

Query: 601 EKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            K WRLP+G+P  +GK L N+L  LN G  IT++M  PEDE SW+   V+FAT  G VRR
Sbjct: 595 TKTWRLPLGAPNTKGKYLTNLLPSLNDGAWITSVMALPEDEESWDQYDVMFATTAGTVRR 654

Query: 660 NKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           NKLSDF+Q+NR+GKIAMKLD    +IL V  C ++ D+LL +  G+ +RFP+  +RVFA 
Sbjct: 655 NKLSDFVQVNRNGKIAMKLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFAS 714

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI---TSL 775
           RNS GVRGI L + D++ISMAI+ H D   DE   YM+H +A RR    + ++       
Sbjct: 715 RNSTGVRGIRLKENDRLISMAILNHIDVTTDEARAYMRHANAMRRAAGLEEDDAVVSAPE 774

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++  +  +S ER  EL   E+F+LTV++ G GKR+S+YD+R+  R  +G+ A D+SK+
Sbjct: 775 DGEAGADVALSPERIAELGAAEEFVLTVAQDGLGKRSSAYDYRVMGRGNQGVAAHDMSKV 834

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                L A FPV D D ++ V+D G LIR PV+ +RIA+RATKGV +   A+ E+VVSV 
Sbjct: 835 K---ELAACFPVIDGDTVMAVTDGGQLIRFPVDTVRIAARATKGVRLIRLAEGEKVVSVV 891

Query: 896 RIRESEIVDEAEST 909
           RI ESE    AE  
Sbjct: 892 RIAESEDDASAEED 905



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 87/239 (36%), Gaps = 5/239 (2%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  V+ VS  G   R P+   R      +  +GV          L  ++    +   + 
Sbjct: 688 EDQDVLLVSAGGRAIRFPVGDVRV--FASRNSTGVRGIRLKENDRLISMAILNHIDVTTD 745

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
               Y      +   +      A+++     +      + P    E      +V+   + 
Sbjct: 746 EARAYMRHANAMRRAAGLEEDDAVVSAPEDGEAGADVALSPERIAELGAAEEFVLTVAQD 805

Query: 655 GNVRRNKLSDFIQI-NRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           G  +R+   D+  +   +  +A   +    E+ +       + ++  T  GQ +RFP+  
Sbjct: 806 GLGKRSSAYDYRVMGRGNQGVAAHDMSKVKELAACFPVIDGDTVMAVTDGGQLIRFPVDT 865

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +R  A R + GVR I LA+G++V+S+  +  ++ D        +   A     + + E 
Sbjct: 866 VR-IAARATKGVRLIRLAEGEKVVSVVRIAESEDDASAEEDGGEAGDAPNTPDAPEDEN 923


>gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
 gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 908

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/914 (52%), Positives = 639/914 (69%), Gaps = 19/914 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+     + +     +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MDENKPERPKYDGP---TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 118 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS+VIR  + +E+   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  ++ ++
Sbjct: 238 YLEGRGSVVIRAKTRVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+A+V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +
Sbjct: 298 DESDRNGVRVVVELKRDATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTS 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V+ RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 358 FLDFREDVIARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L
Sbjct: 418 RWPAVDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L+ILSSR R+LGII  EL  V+D    PRRT IV+   DMEDED I REDMVV
Sbjct: 478 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY+KR PL  +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK
Sbjct: 538 TITSGGYIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP G   ++GKA++NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN
Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +LSDF  + R+GKIAMKL      ++++   C++++D++L T  G+ +RF  + +RVF  
Sbjct: 658 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNS 717

Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRGI L ++GD+V+SM+++ H  A+  ER  ++K   ++         E+   +N
Sbjct: 718 RESTGVRGIRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGG------EVAEDEN 771

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               EG++SEER QE+      ++T++  G G  TS++D+R+S R G+G+ A        
Sbjct: 772 GEESEGSLSEERYQEMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMK------ 825

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GA+VA FPV   DQI+L + KG  IR PVN I   SR+  GV +F+TAK E VVSV  I
Sbjct: 826 GGAIVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWI 885

Query: 898 RESEIVD-EAESTE 910
            E +  D E  ++E
Sbjct: 886 AERDDEDAEVPTSE 899


>gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 900

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 635/894 (71%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTV+FRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  ++NP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLKRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 ELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L+ GE IT IMP P +     N  +VFAT +GN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLSDGETITNIMPLPSEN--DENQNIVFATAYGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K 
Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A+R L +     I S    +  +  I  E   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10]
          Length = 908

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 480/914 (52%), Positives = 639/914 (69%), Gaps = 19/914 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+     + +     +VSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ M
Sbjct: 1   MDENKPERPKYDGP---TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   +K Y K AR  G+VMGKYHPHG++AIYDAL RMAQD+S+ L L++GQGNFGS+
Sbjct: 58  HEVGNSHDKPYRKSARPVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDTVDF+ NYDG  +EP VL AR+PN+LVNG G
Sbjct: 118 DGDNPAAMRYTEVRMDKPAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D  +A+I++PD+  + L++ + GPDFPTG V+LGR+G + A
Sbjct: 178 GIAVGMATNIPPHNLGEVIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVMLGRSGARKA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS+VIR  + +E+   DR  IVV EIPYQVNKAAM+EKIAE VREK+I  ++ ++
Sbjct: 238 YLEGRGSVVIRAKTRVEEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQ 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELKR A+A+V+LNQLYR++ +Q+ F  NM+ALNG +PE+ TL   L +
Sbjct: 298 DESDRNGVRVVVELKRDATAEVVLNQLYRFSPMQTHFGCNMLALNGGRPEQLTLRRFLTS 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V+ RRT Y L KAR+R+H+L GLA+AV+N+DEVV  IR S +   AR +LM R
Sbjct: 358 FLDFREDVIARRTAYDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W A DI   I LIDD ++T+  DGT  LSEVQ RAILELRL RLT +G  ++ +EL  L
Sbjct: 418 RWPAVDIAPYIRLIDDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEEL 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE L+ILSSR R+LGII  EL  V+D    PRRT IV+   DMEDED I REDMVV
Sbjct: 478 AGKIKEYLEILSSRERILGIISDELREVRDNFAVPRRTEIVDWSGDMEDEDLIEREDMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GY+KR PL  +RAQ+RGGKG SG+  ++ED VT+LF+ +THT +LFF++ G VYK
Sbjct: 538 TITSGGYIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYK 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K WRLP G   ++GKA++NIL +  G  I  IMP    +  W NL VVFAT  G+VRRN
Sbjct: 598 LKTWRLPQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +LSDF  + R+GKIAMKL      ++++   C++++D++L T  G+ +RF  + +RVF  
Sbjct: 658 RLSDFTNVRRNGKIAMKLPEDGSVKLVNARICSEDDDVMLVTNSGRAIRFRSTDVRVFNS 717

Query: 719 RNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R S GVRGI L ++GD+V+SM+++ H  A+  ER  ++K   ++         E+   +N
Sbjct: 718 RESTGVRGIRLVSEGDEVVSMSVIRHFSAEPWERNAFIKRFRSELGG------EVAEDEN 771

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
               EG++SEER QE+      ++T++  G G  TS++D+R+S R G+G+ A        
Sbjct: 772 GEESEGSLSEERYQEMLAANDLLVTINRSGVGNLTSAHDYRVSGRGGQGVGAMK------ 825

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GA+VA FPV   DQI+L + KG  IR PVN I   SR+  GV +F+TAK E VVSV  I
Sbjct: 826 GGAIVATFPVELEDQIMLATSKGQSIRCPVNGISFRSRSAGGVRVFNTAKGEEVVSVAWI 885

Query: 898 RESEIVD-EAESTE 910
            E +  D E  ++E
Sbjct: 886 AERDDEDAEVPTSE 899


>gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1]
 gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1]
          Length = 919

 Score =  925 bits (2390), Expect = 0.0,   Method: Composition-based stats.
 Identities = 477/920 (51%), Positives = 621/920 (67%), Gaps = 17/920 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MT+     +  E+           S+ I+ EM+ S+L YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MTDTPEPPENGEDTLPERPEYSGPSIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M + G    K Y K AR  G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILFAMHETGNTHEKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+   A +LL+D+ KDTVDF+ NYDG  QEP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDAPAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+ PD+  + L+E +  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIEKPDLSSEELIEYVPAPDFPTGGIILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS++IR  +  E+   DR  IV+ EIPYQVNKA+M+E+IAELVR+K+I
Sbjct: 241 RSGAQKAYIEGRGSVIIRAKTRTEEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+ + DESDR G RVV+ELKR A+ +V+LNQL+R+T +Q+ F  NM+ALNG KPE+ T
Sbjct: 301 DGISGVADESDRIGVRVVVELKRDATPEVVLNQLFRFTQMQTSFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L G L +F+ FREEVV RRT + L KARDRAHVL GLA+AV+N+DEVV  IR S +   A
Sbjct: 361 LRGFLTSFLDFREEVVARRTAFELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM R+W A +I   I LIDD ++    DGT  LSE Q RAILELRL RLT LG  ++
Sbjct: 421 RAALMTRAWPAEEILPFIKLIDDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IK+ L IL+SR R+L II  EL  V+ +    RRT IVE   DM+DED I
Sbjct: 481 TDELEELAGKIKDYLAILASRERILEIISNELAEVRAKFAVDRRTEIVEWSGDMDDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            R DMVVT++  GY+KR PL+ +RAQ+RGGKG +G  M+D+D VT +F+ +THT +LFF+
Sbjct: 541 ERSDMVVTITQGGYIKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP GS  +RGKA++NIL +  G  I  IMP   DE  W+ L VVF T 
Sbjct: 601 TGGMVYKLKTWRLPSGSRSSRGKAIVNILPIEIGTGIAAIMPVDRDEEHWDELQVVFCTD 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN LSDF  + R+GKIAMK +   E   +++    + ++D++L TK G+ +RFP 
Sbjct: 661 RGTVRRNALSDFANVMRNGKIAMKFEGDSEGWRMINARIASNDDDVMLVTKQGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R S GVRGI L K D+V+SM+I+ H DA+  ER  Y+K      R +     
Sbjct: 721 TDVRVFNSRASTGVRGIKLGKDDEVVSMSIIRHFDAEASERAAYLKQ-----RRLMAGVT 775

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           E      D   EG++S ER  E+   E  ILT++  G GK +SS+D+ +  R G+G+ A 
Sbjct: 776 EEAETDEDDVPEGDLSPERYAEMSAAEDLILTITSGGLGKLSSSHDYPVRGRGGQGVSAI 835

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G L+A FPV  +DQI+L +  G  IRVP++ I   SR+  GV +F+TAK E 
Sbjct: 836 D--KAMRGGTLIASFPVEMDDQIMLATSTGQSIRVPIDGISFRSRSAGGVKVFNTAKGED 893

Query: 891 VVSVERIRESEIVDEAESTE 910
           +VSV  I +    D     E
Sbjct: 894 IVSVAYIADQGDEDADVIDE 913



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 49/279 (17%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF-VTDLFIVSTH 586
           + ++    E  VV  +  G V+R  LS +    R GK         E + + +  I S  
Sbjct: 644 DRDEEHWDELQVVFCTDRGTVRRNALSDFANVMRNGKIAMKFEGDSEGWRMINARIASND 703

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE------ 640
             V+  +  G   +     +      +R    +  + L + + + ++      +      
Sbjct: 704 DDVMLVTKQGRAIRFPATDVR--VFNSRASTGVRGIKLGKDDEVVSMSIIRHFDAEASER 761

Query: 641 ------------------------------------SSWNNLYVVFATKHGNVRRNKLSD 664
                                                S     ++  T  G  + +   D
Sbjct: 762 AAYLKQRRLMAGVTEEAETDEDDVPEGDLSPERYAEMSAAEDLILTITSGGLGKLSSSHD 821

Query: 665 F--IQINRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +        G  A+ K      +++      ++ I+L T  GQ +R PI  I  F  R++
Sbjct: 822 YPVRGRGGQGVSAIDKAMRGGTLIASFPVEMDDQIMLATSTGQSIRVPIDGI-SFRSRSA 880

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            GV+  + AKG+ ++S+A +     +  + I       A
Sbjct: 881 GGVKVFNTAKGEDIVSVAYIADQGDEDADVIDEDPAPDA 919


>gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont]
          Length = 876

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/904 (44%), Positives = 578/904 (63%), Gaps = 68/904 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EIAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K +  LL DL K+TVDF PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MAKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A I++ +I ++ LME I GPDFPT A I GR GI+ AY TGRG I IR   
Sbjct: 187 LTEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+  TL  I++AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKIMTLKEIIEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR +P P  A+  L+ +SW+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL++++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIHILQSAERLMEVIREELVAMRDQFGDARRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    +N   +  AT  G V++  L +F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYTEGFN---IFMATADGTVKKTALQEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR++ GVR
Sbjct: 664 SRPRSAGIIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFAESAVRAM-GRSASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +     A                                       
Sbjct: 723 GIRLAEGDKVVSLIVPREEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G +V   
Sbjct: 744 --------------ILTVTQNGYGKRTANSEYPTKSRATQGVISIKVTERN--GPVVGTV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ +    +E
Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAKPVEEEE 847

Query: 906 AEST 909
            + +
Sbjct: 848 LDGS 851



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 94/239 (39%), Gaps = 15/239 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  +   R  G     + +R++D +  + + + +   + FS+ G V +  
Sbjct: 650 TADGTVKKTALQEFSRPRSAG--IIAINLREDDELIGVALTNGNDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+++ +++             ++  T++G  +R   
Sbjct: 708 ESAVRAMGRSA---SGVRGIRLAEGDKVVSLI------VPREEGAILTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ +  + +   +    V         + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVVGTVQVVDSDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           N+ GV  I  A+ + V+ +  V     + +      +  +     +  D +   +   +
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAKPVEEEELDGSVAEGENDIAPEVDSDDDAPETDDEE 876


>gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 896

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 418/908 (46%), Positives = 571/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D                        +S++    +   E       +SSV
Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 26/257 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+V L  +   R  G     + +R+ D +  + I    + ++ F
Sbjct: 643 FSADKFIFMATASGVVKKVSLDSFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------- 635
           S+ G V +     +      A G   I + + +                           
Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLD 760

Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689
                          ++  T++G  +R  + ++   +R+ K  + +   +   ++++   
Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + + I+L T  G  VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +
Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879

Query: 750 ERICYMKHMSAQRRLIS 766
                    S +    +
Sbjct: 880 NSEALDNVESTETSTEA 896


>gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6]
 gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6]
          Length = 885

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/916 (41%), Positives = 551/916 (60%), Gaps = 76/916 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L DL K+TVDF PNYDGS +EP+VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  ++ LMEII  PDFPT  +I G  G++  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLMKNPEASIEELMEIIPAPDFPTAGIIYGINGVREGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKVHFEDIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALIDGQPKLCNLKQLLEIFLEHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+DE +  I+ SP P  A+  LM +SW++S ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDEFIETIKNSPTPPVAKLALMSKSWDSSVVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  + + +DG   LS+ Q   IL++RL RLTGL +D I
Sbjct: 422 EMLTRAEGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMED 529
             E   +  +I + LDIL+  +R+  II  EL +V+ E        RR+ +   + ++  
Sbjct: 482 VGEYKDVMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSKIGVRRSVVEHNVQELGT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PL+ YRAQ+RGG+G+     +D+D+V +LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWM 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYV 648
           L FS+ G VY  KVW +P G   +RGK ++N+  L   E+I  ++P    + S   + Y+
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGGRNSRGKPIVNMFPLQPDEKINVVLPLTGANRSFPADHYI 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T  G V++  L DF    ++G IA+ LD  D ++       ++D++L +  G+ VRF
Sbjct: 662 FMCTARGTVKKTALDDFSNPRKAGIIAVDLDEGDFLIGAALTDGQHDVMLFSDGGKAVRF 721

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GVRG++L +G  VI+M +                            
Sbjct: 722 DEEDVRPL-GRQARGVRGMALDEGQSVIAMLVAED------------------------- 755

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                      + Q +LT +E G+GKRTS  ++    R  KG+ 
Sbjct: 756 ---------------------------ETQSVLTATENGYGKRTSILEYTRHGRGTKGMI 788

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   ++ N  G +VA   V  ND+I+L++D+G L+R  V EIR   RAT+GV + +  + 
Sbjct: 789 AIQQTERN--GKVVAATLVRPNDEIMLITDRGVLVRTRVAEIRELGRATQGVTLIALDEG 846

Query: 889 ERVVSVERIRESEIVD 904
            ++  ++RI E++  +
Sbjct: 847 AKLSGLQRIVENDANE 862



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 99/241 (41%), Gaps = 14/241 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+  L  +   R+ G     +   + DF+    +      V+ F
Sbjct: 655 FPADHYIFMCTARGTVKKTALDDFSNPRKAGIIAVDLD--EGDFLIGAALTDGQHDVMLF 712

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     QARG   +  ++L++G+ +  ++   +         V+ AT
Sbjct: 713 SDGGKAVRFDEEDVRPLGRQARG---VRGMALDEGQSVIAMLVAED-----ETQSVLTAT 764

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++       ++I+L T  G  VR  
Sbjct: 765 ENGYGKRTSILEYTRHGRGTKGMIAIQQTERNGKVVAATLVRPNDEIMLITDRGVLVRTR 824

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ IR   GR + GV  I+L +G ++  +  ++  DA+       +         + G+ 
Sbjct: 825 VAEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANESIADPGVDANPEADAGVPGEE 883

Query: 770 E 770
            
Sbjct: 884 S 884


>gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163]
 gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617]
          Length = 878

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 ITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D++             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V   +  ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +     A                                       
Sbjct: 723 GIKLAEGDRVVSLIVPRDDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 744 --------------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R  G     V +RD+D +  + + S     + FS+ G V +  
Sbjct: 650 TASGTVKKTALTDFSRPRSAG--IIAVNLRDDDELIGVSLTSGSDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+R+ +++         ++  ++  T++G  +R   
Sbjct: 708 ESAVRTMGRTA---SGVRGIKLAEGDRVVSLI------VPRDDGAIMTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 VEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV  I  A+ + V+ +  V    A+ +              +      +  + + D 
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGSAAEGDDEIAPEVDTDDQAPEADD 877

Query: 780 S 780
            
Sbjct: 878 E 878


>gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
 gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158]
          Length = 867

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/919 (42%), Positives = 562/919 (61%), Gaps = 77/919 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLSNPDATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMTKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + +Y + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL +VK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTTVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI++ +    +                          
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLVAGSEE-------------------------- 751

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                     Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 752 --------------------------QSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERIRESEIVDEAESTE 910
             +++I E+E  D  E+ E
Sbjct: 844 SGLQQIAEAEEGD-GEADE 861


>gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
 gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58]
          Length = 923

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/950 (42%), Positives = 570/950 (60%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+      REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  YLS  Q +AILELRL RLTGL  + + +E   +
Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VV
Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646
            + + +P  S  ARG+ L+N+L L++GERIT ++    +    N                
Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662

Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                                     Y+  AT  G V++  L  F +   SG IA+KL+ 
Sbjct: 663 GEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V+E+ ++ R T+GV +   A DE +V +ER++E    D+ +  E
Sbjct: 847 TLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPE 896



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 98/247 (39%), Gaps = 15/247 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + + + D +    I      V+ FSS G 
Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     + I    ARG   +  + L +G+++ +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + + +     ++     +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             +GRN+ GV  I LA  + ++ +  V       DE +   +  +      +    E  +
Sbjct: 857 SLSGRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEDLPEGEEAAESLGESAESESEPAA 916

Query: 775 LKNDSSV 781
               +  
Sbjct: 917 EAEGNEE 923


>gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110]
 gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110]
          Length = 881

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/916 (42%), Positives = 557/916 (60%), Gaps = 77/916 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP   +D LMEI+  PDFPT  +I G  G+++ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVRDGYRTGRGKVVMRAK 245

Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPKLCNLKDLIEVFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++ 
Sbjct: 366 TVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425

Query: 433 LIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                 + +GSDG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RSRADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532
              +  EI + LDIL+   R+  II +EL ++K E        RR+ +     D+  ED 
Sbjct: 486 YKEVMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSKLGARRSLVEHSAYDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PL+ YRAQ+RGG+G+   V +++D++  LFI +TH  +L F
Sbjct: 546 ITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I   +    E  +   + YV  A
Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFMA 665

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF   
Sbjct: 666 TSMGTVKKTTLDEFSNPRKGGIIAVNLDEGDYLIGAALTDGKHDVMLFSDGGKAVRFDEE 725

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GRN+ GVRG+SL  G  VI+M +                               
Sbjct: 726 DVRPL-GRNARGVRGMSLDPGQGVIAMLVAED---------------------------- 756

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 757 ------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 792

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+ +D+I+L++DKG L+R  V EIR   RAT+GV +    +  ++
Sbjct: 793 QSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKL 850

Query: 892 VSVERIRESEIVDEAE 907
             ++RI E++   E+E
Sbjct: 851 SGLQRIVENDANGESE 866



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 99/236 (41%), Gaps = 14/236 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+GG     +   + D++    +      V+ F
Sbjct: 656 FPADQYVFMATSMGTVKKTTLDEFSNPRKGGIIAVNLD--EGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +  +SL+ G+ +  ++   +         V+ AT
Sbjct: 714 SDGGKAVRFDEEDVRPLGRNARG---VRGMSLDPGQGVIAMLVAED-----EQQSVLTAT 765

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 766 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           ++ IR   GR + GV  I L +G ++  +  ++  DA+ +         S+     
Sbjct: 826 VAEIREL-GRATQGVTLIGLDEGAKLSGLQRIVENDANGESEPGADDTSSSSTENP 880


>gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 878

 Score =  924 bits (2389), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/905 (44%), Positives = 575/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 645 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 813 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 896

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/908 (46%), Positives = 571/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D                        +S++    +   E       +SSV
Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  + ++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGT 835

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +         S +   
Sbjct: 836 LVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDNVESTETST 894

Query: 765 IS 766
            +
Sbjct: 895 EA 896


>gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7]
 gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7]
          Length = 921

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/950 (43%), Positives = 571/950 (60%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A++DNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + +E+      REQI++TE+PYQ+NKA ++EKIAELV+EK+I  I++LRDESD+ G 
Sbjct: 243 RARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  YLS  Q +AILELRL RLTGL  + + +E   +
Sbjct: 423 AMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E + IL++ +RL+ +I++EL +VK E    RRT IV   +D+   D I  ED VV
Sbjct: 483 LNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIADLITEEDRVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   M+DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646
            + + +P  S  ARG+ L+N+L L++GERIT ++    +    N                
Sbjct: 603 LRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEAEGAVLE 662

Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                                     Y+  AT  G V++  L  F +   SG IA+KL+ 
Sbjct: 663 GEVVEAAEIEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLIALKLEE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        +++L +  G+ +RF  S +R+  GRN+ GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIM-GRNARGVRGMRLGKGQQLISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A   ++ N  GAL+A   V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIAAVQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V+E+ ++SR T+GV +   A DE +V +ER++E    D+ E  E
Sbjct: 847 TLVRTRVDEVSLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPE 896



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 97/245 (39%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + + + D +    I      V+ FSS G 
Sbjct: 689 YIFMATAFGTVKKTPLVQFSRPRSSG--LIALKLEEGDTLIAAAITDGAKEVMLFSSAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     + I    ARG   +  + L +G+++ +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVRIMGRNARG---VRGMRLGKGQQLISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + + +     ++     +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQEGEEIMLISDQGTLVRTRVDEV- 856

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  V       DE +   +  +      +       +
Sbjct: 857 SLSSRNTQGVTLIKLASDEVLVGLERVQEPSGGDDEELPEGEEGAEALGESAESEPAAEA 916

Query: 775 LKNDS 779
             N+ 
Sbjct: 917 EGNEE 921


>gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430]
 gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946]
 gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430]
 gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 878

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV++GC+A I + +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 ITEVINGCLAYIADENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EV+ RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVITRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ R W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D++             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L+DF
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATASGTVKKTALTDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  SA+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFAESAVRTM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+GD+V+S+ +     A                                       
Sbjct: 723 GIKLAEGDRVVSLIVPRDDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 744 --------------IMTVTQNGYGKRTANVEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDGDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 94/241 (39%), Gaps = 15/241 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R  G     V +RD+D +  + + +     + FS+ G V +  
Sbjct: 650 TASGTVKKTALTDFSRPRSAG--IIAVNLRDDDELIGVSLTNGSDEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L +G+R+ +++         ++  ++  T++G  +R   
Sbjct: 708 ESAVRTMGRTA---SGVRGIKLAEGDRVVSLI------VPRDDGAIMTVTQNGYGKRTAN 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 VEYPTKSRATQGVISIKVTERNGPVIGAVQVVDGDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV  I  A+ + V+ +  V    A+ +              +      +  S + D 
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDAIDGSAAEGDDDIAPEVDTDDESPEADD 877

Query: 780 S 780
            
Sbjct: 878 E 878


>gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia
           solanacearum CMR15]
          Length = 885

 Score =  924 bits (2388), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/916 (41%), Positives = 565/916 (61%), Gaps = 65/916 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    VS+ +EM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPVSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I G +G++  Y TGRG +V
Sbjct: 182 IPPHNLREVVDGCLHLLHNPDATVDELIELIPAPDFPTAGIIYGISGVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E     + + I+V E+PYQVNK  +LE+IAELV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRLLNLRQMLECFLLHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P  A++ELM R+W++  ++
Sbjct: 362 VTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPIAKQELMGRNWDSGLVR 421

Query: 429 DLIDLIDDSS---------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +  +               + +   G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLSRAESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
             E   +  +I + LDIL+   R+  II +EL  ++ E    RR++I     +++ ED I
Sbjct: 482 VQEYREVMAQIADLLDILARPERITAIIVEELTLIRAEFGDERRSQIEHNATELDTEDLI 541

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D++  LF+ +TH  +L FS
Sbjct: 542 TPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCFS 601

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P  + +      +V  +T 
Sbjct: 602 NRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFD---EQHFVFMSTS 658

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L++F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +
Sbjct: 659 KGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVRG++L +G QVI+M +     A   E+                      
Sbjct: 719 RPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS----------------- 760

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +LT +E G+GKRT   ++    R  KG+ A   S
Sbjct: 761 --------------------------VLTATENGYGKRTPISEYTRHGRGTKGMIAIQTS 794

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA   V   D+I+L++  G LIR  V+EIR   RAT+GV + +  +  ++  
Sbjct: 795 ERN--GKVVAAALVAAEDEIMLITTGGVLIRTRVDEIREMGRATQGVTLIAVGEGNKLSG 852

Query: 894 VERIRESEIVDEAEST 909
           ++R+ ES+   E  + 
Sbjct: 853 LQRVVESDAEGEDAAD 868



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 647 FDEQHFVFMSTSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 704

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
           S  G   +     +     QARG   +N   L +G+++  ++  P + +          V
Sbjct: 705 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 761

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 762 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAAEDEIMLITTGGVL 821

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++          +    
Sbjct: 822 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGGAESDGEAPNA 880

Query: 766 SGDT 769
               
Sbjct: 881 DTAE 884


>gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3]
 gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3]
          Length = 871

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/919 (42%), Positives = 563/919 (61%), Gaps = 76/919 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPQASIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   ++V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L+ F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLECFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+D+ + +I+ +P P  AR+ELM RSW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLARAEAENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIIGEELTAVKSEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMG 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPLKKGIIAVGLDEGDFLIGAAITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V    +I+L++  G LIR  V+EIR   RAT+GV + S  +  R+
Sbjct: 786 TSERN--GKVVAATLVEPESEIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTRL 843

Query: 892 VSVERIRESEIVDEAESTE 910
             +++I E++   E ++ +
Sbjct: 844 SGLQQIAEADADSEIDADD 862


>gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS]
 gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS]
          Length = 881

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/918 (42%), Positives = 554/918 (60%), Gaps = 77/918 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+ +EM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+ Y K
Sbjct: 6   KETLPISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF+ NYDGS +EP VL ++ PN+LVNG GGIAVGMATNIP H
Sbjct: 126 RLAKIAHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+ ++ NP   +D LMEI+  PDFPT  +I G  G+K+ Y TGRG +V+R  
Sbjct: 186 NLNEVVDACLHLLRNPQATIDELMEIVPAPDFPTAGIIYGINGVKDGYRTGRGKVVMRAK 245

Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G R+VI
Sbjct: 246 CHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EVV RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLQHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  +++++ 
Sbjct: 366 TVFTLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLT 425

Query: 433 LIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                 + +GSDG   LSE Q + IL++RL RLTGL +D I  E
Sbjct: 426 RSRADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAE 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDC 532
              +  EI + LDIL+   R+  II  EL ++K E        RR+ +     D+  ED 
Sbjct: 486 YKDVMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSKLGARRSLVEHSAFDLSTEDL 545

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D++  LFI +TH  +L F
Sbjct: 546 ITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCF 605

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFA 651
           S+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I   +    E  +   + YV  +
Sbjct: 606 SNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVALALTGEKRNFPADQYVFMS 665

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VRF   
Sbjct: 666 TSMGTVKKTALDEFNNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVRFAED 725

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GRN+ GVRG+SL  G  VI+M +                               
Sbjct: 726 DVRPL-GRNARGVRGMSLDPGQGVIAMLVAED---------------------------- 756

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E G+GKRTS  ++    R  KG+ A  
Sbjct: 757 ------------------------EQQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQ 792

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+ +D+I+L++DKG L+R  V EIR   RAT+GV +    +  ++
Sbjct: 793 QSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIGLDEGAKL 850

Query: 892 VSVERIRESEIVDEAEST 909
             ++RI E++   E+E  
Sbjct: 851 SGLQRIVENDANGESEPD 868



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/236 (19%), Positives = 99/236 (41%), Gaps = 14/236 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+GG     +   D D++    +      V+ F
Sbjct: 656 FPADQYVFMSTSMGTVKKTALDEFNNPRKGGIIAVNLD--DGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +  +SL+ G+ +  ++   +         V+ AT
Sbjct: 714 SDGGKAVRFAEDDVRPLGRNARG---VRGMSLDPGQGVIAMLVAED-----EQQSVLTAT 765

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 766 ENGYGKRTSITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           ++ IR   GR + GV  I L +G ++  +  ++  DA+ +         S+     
Sbjct: 826 VAEIREL-GRATQGVTLIGLDEGAKLSGLQRIVENDANGESEPDADDTSSSSTENP 880


>gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
 gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968]
 gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella
           longbeachae NSW150]
          Length = 866

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/903 (45%), Positives = 567/903 (62%), Gaps = 69/903 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEVLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD +   PVVL +R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A++D+P+I LD +M+II GPDFPT A+I GR GI   Y TG+G  +IR  
Sbjct: 186 NLTEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAIINGRAGIIQGYRTGKGRAIIRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      R+ I++TE+PYQVNKA ++E+IAELVR+K+I  I+ LRDESD+QG RVVI
Sbjct: 246 TEIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR   ADVILN LY  T +Q++F +NMVAL   +P    L  IL+ F+  R EVV RR
Sbjct: 306 ELKRQEIADVILNNLYTQTQMQNVFGINMVALVDGQPRTLNLKQILEYFIKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR RAH+L GL IA+AN+DE++ +I+ SP P+ A++ L+ + W    +K +++
Sbjct: 366 TLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +                  LSE Q +AILELRL RLT L +D I +E   L   I
Sbjct: 426 RAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L+IL+S  RL+ +I+ E + +K +    RRT I+E   D+  ED I  E++VVT+SH
Sbjct: 486 RELLEILASPERLMQVIRDEFVEIKTQFGDERRTEIIESQEDLTIEDLITEENVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P+S Y+AQRRGGKG+S   ++DEDFV+ L I STH ++L FS+ G +Y  K +
Sbjct: 546 QGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHGKLYWLKAY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP+ S  +RG+ +INIL L +GE I  ++P  E     +  YV  ATK G V++  L+ 
Sbjct: 606 ELPLASRISRGRPIINILPLAEGEEINAMLPVREYL---DGYYVFMATKKGTVKKVPLNA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ LD  D ++ V+      DI+L T  G+ VRF  + +R   GR + GV
Sbjct: 663 FSRPRSNGIIAVDLDDDDSLVGVDITDGSKDIMLFTDAGKVVRFDENKVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI + +   VIS+ +                                            
Sbjct: 722 RGIRIEEEQAVISLVVAHP----------------------------------------- 740

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  ILT +E G+GKRTS  ++R+S R G+G+ +  V++ N  G +V  
Sbjct: 741 ------------DGTILTATENGYGKRTSIDEYRVSGRGGQGVISIQVNERN--GKVVRS 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D+ +L++DKGTL+R  VNE+ +  R T+GV + + +  E+VV +++I E    D
Sbjct: 787 VQVTDADEAMLITDKGTLVRFKVNELSVIGRNTQGVRLINVSSGEKVVGMQKI-EDLGED 845

Query: 905 EAE 907
             +
Sbjct: 846 SND 848


>gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 908

 Score =  924 bits (2387), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/925 (44%), Positives = 560/925 (60%), Gaps = 88/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+ GC+A+I++P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R  
Sbjct: 186 NINEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 305 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+   W    +K +++ 
Sbjct: 365 VFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGMLEK 424

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 425 AGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEIIA 484

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  V       RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 485 ALLFILGSPQRLMEVIKEELEEVLANFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 544

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 545 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 604

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L +GERIT I+P  E      + Y++ AT HG V++  L+ +
Sbjct: 605 LPLASRTARGRPIVNLLPLAEGERITAILPVREYA---EDKYIIMATSHGTVKKTALTAY 661

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+     NDI+L +  G+ VRF   A             
Sbjct: 662 SNPRANGIIAVNLKDGDQLIGVDITDGNNDIMLFSNEGKVVRFNEKARSSETGEVKIDPE 721

Query: 713 -------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                  +R   GR + GVRGI L  G  V+S+ +                         
Sbjct: 722 TGEEVIALRAM-GRTATGVRGIKLEDGQTVVSLIV------------------------- 755

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          E  ILTV+E G+GKRT   ++   +R  K
Sbjct: 756 ----------------------------PKGEGDILTVTENGYGKRTDLAEYPAKSRGTK 787

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  T
Sbjct: 788 GVVSIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRT 845

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
           A+DE+VV ++RI E ++ +     E
Sbjct: 846 AEDEKVVGLQRIDEIQVPEVELDEE 870



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 100/272 (36%), Gaps = 18/272 (6%)

Query: 536 EDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           ED  + + +  G VK+  L+ Y   R  G     V ++D D +  + I   +  ++ FS+
Sbjct: 640 EDKYIIMATSHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGNNDIMLFSN 697

Query: 595 LGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIM---------PFPEDESSW 643
            G V +          G  +   +    +++L    R  T +                  
Sbjct: 698 EGKVVRFNEKARSSETGEVKIDPETGEEVIALRAMGRTATGVRGIKLEDGQTVVSLIVPK 757

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTT 700
               ++  T++G  +R  L+++   +R  K  + +   +     +      + ++I+L +
Sbjct: 758 GEGDILTVTENGYGKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLIS 817

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  VR P + +    GRN+ GV  I  A+ ++V+ +  +        E       +  
Sbjct: 818 NKGTLVRTPATGVSSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQVPEVELDEEGNPIIV 876

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +    +    E  +    ++   +    + ++
Sbjct: 877 EGAAETEGQTEAANTDASNTEGESTETPKTED 908


>gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 896

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/908 (45%), Positives = 569/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M++ DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA                           +S++    +   E       +SSV
Sbjct: 722 TGVRGIKLA------------------------TTEISSEEIEEAEIVEIENEEAEESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  + ++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGT 835

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +         + +   
Sbjct: 836 LVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDNVENTETST 894

Query: 765 IS 766
            +
Sbjct: 895 EA 896


>gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
 gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661]
          Length = 887

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 574/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR   
Sbjct: 187 LTEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARG 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I++ EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+E
Sbjct: 247 EVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQTSFGINMVALHQGQPKIMPLKDILEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+ANLD ++ +IR + NP  A+  L+ R W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D++             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIRILESSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E    WN   +  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYAEGWN---IFMATACGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   DE++ V      ++ +L +  G+ VRF  +A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFAETAVRAM-GRTASGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D+V+S+ +     A                                       
Sbjct: 723 GIKLAENDRVVSLIVPQEEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         I+TV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G ++   
Sbjct: 744 --------------IMTVTQNGYGKRTNTSEYPTKSRATQGVISIKVTERN--GPVIGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D+DQI++++D GTL+R  V+E+ +  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVVDSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVILIRTAEDENVVGLQRVAEPVAEEE 847

Query: 906 AESTE 910
            +  +
Sbjct: 848 LDGID 852



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 94/250 (37%), Gaps = 15/250 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R  G     V +RDED +  + + +     + FS+ G V +  
Sbjct: 650 TACGTVKKTALTEFSRPRSAG--IIAVNLRDEDELIGVSLTNGADEAMLFSAAGKVVRFA 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   + +  + L + +R+ +++             ++  T++G  +R   
Sbjct: 708 ETAVRAMGRTA---SGVRGIKLAENDRVVSLI------VPQEEGAIMTVTQNGYGKRTNT 758

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ +  + +   +     +        + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATQGVISIKVTERNGPVIGAVQVVDSDQIMMITDAGTLVRTRVSEV-SVVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV  I  A+ + V+ +  V    A+ +              +      +  +  ++ 
Sbjct: 818 NTQGVILIRTAEDENVVGLQRVAEPVAEEELDGIDGTVAEGDEDIAPEVEVDDAADVDNE 877

Query: 780 SVEGNISEER 789
                  E+ 
Sbjct: 878 DEAPEGDEDE 887


>gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ]
 gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ]
          Length = 848

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/904 (44%), Positives = 567/904 (62%), Gaps = 62/904 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E+     +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK
Sbjct: 2   QEQVTQKVAVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+++  H LL DL K+TV F PNYD S  EP VL A++PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRMKQLTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D  +A+I NP +  + L+E++ GPDFPTG  I GR GI + YATGRG I 
Sbjct: 182 IPPHNLGEIIDAIIALIHNPALSYEELLELVPGPDFPTGGTIYGRQGIIDGYATGRGVIQ 241

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  +H+E     DRE IVVTEIPYQVNKA ++  IAELV+EK+I  I+DLRDESDR G 
Sbjct: 242 IRAKAHVENSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+LK+  +A+V+LNQLY++T +Q+ F +NM+A+   +P+  +L  ++  F+  R E+
Sbjct: 302 RIVIDLKKDENAEVLLNQLYKHTQMQTSFGINMLAIVHNRPKLMSLAEMMHYFIEHRREM 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V +RT + L KA  RAH+L GL IA+  LD V+ +IR S  P  A+  LM+  +   D  
Sbjct: 362 VTKRTLFELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYL 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             ++L   + Y         LSE+Q +AILE+RL RLTGL RD I  E   +   I    
Sbjct: 422 QRLNLPRPAGYEKAVQ----LSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLK 477

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + ++ II  EL  +K+     RRT IV    D+  ED I   +MVVTVSH GY+
Sbjct: 478 EILGSDAEIMKIIVGELTEIKERFGDKRRTEIVHQTADISLEDTIEDAEMVVTVSHTGYI 537

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  + +YRAQRRGGKG++G+  R+EDFV  LFI ST   +LFFS +G VY+ KV+ +P 
Sbjct: 538 KRSAVDLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIPE 597

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS   +GKA++N++++ +GE+IT I+P  +      +LY++ AT++G V++  L +++ I
Sbjct: 598 GSRTTKGKAVVNLVNVQEGEKITAILPVKDLN--REDLYLLMATRNGVVKKTPLVEYLNI 655

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ LD  D+++SV     + D+ L ++ G+ +RFP S  R   GR + GVRG++
Sbjct: 656 RTTGINAVNLDEGDKLISVALTDGQKDVFLASRHGKAIRFPESDARPM-GRVTRGVRGMN 714

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+VI M +V                                               
Sbjct: 715 LEARDEVIGMEVVDPT-------------------------------------------- 730

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      I T++E GFGKRT   ++R  +R GKG+     +  N  G +V V  VN
Sbjct: 731 ------ATGSTIFTLTENGFGKRTDLDEYRGQSRGGKGLITIKTTTRN--GLVVGVMQVN 782

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906
           D +Q+++++D+G ++RVPV    +  R T+GV +  T + E++V+V ++ E +  D  E 
Sbjct: 783 DENQLMVITDQGKILRVPVAGFSVIGRNTQGVRVMVTEEQEKIVAVAKLAERDDEDGIEP 842

Query: 907 ESTE 910
           E  E
Sbjct: 843 EGEE 846


>gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington]
 gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A
 gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington]
          Length = 905

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 453/899 (50%), Positives = 636/899 (70%), Gaps = 9/899 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y 
Sbjct: 6   SSNLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG++AIYD+L RM QD+SLRL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH L++D+ K TV F  NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP 
Sbjct: 126 SRMSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG
Sbjct: 186 HNLGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ I
Sbjct: 246 KAEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  R
Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLLNKARDRAH+L+GLAIA++N+DE++ II+ S +   A++ELM R W   DI  LI 
Sbjct: 366 TIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLIK 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+DD    +   G +  +EVQ +AILE++L RLT + ++ +  +L  L  EI E L+IL 
Sbjct: 426 LVDD-KVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILD 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+RLL I+K+EL+ VK+E   PR T I  G  D + ED I RE+MVVTV+  GY+KRVP
Sbjct: 485 SRTRLLEILKEELIKVKEEFAVPRLTAIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR+Q+RGGKGRSG+ MRDED    +F+ STHT +LFFS++G VY  K+++LP+ +PQ
Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQ 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ ++NIL L + E IT IMP PE++  W++L ++FAT  GN+RR+ L DF +I  +G
Sbjct: 605 GKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQLNG 664

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++R+   R S GVRG+ LAK 
Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKE 724

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM ++   ++  ++R  Y+     +R  I+   E      N  ++  +++ +   E
Sbjct: 725 DSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEE-----FNLEALGVHLNADSILE 779

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAESTE 910
           ++L+++ G LIR  +  +RI  R T GV++F    DE+VVSV  I E SE  +++E  E
Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETSESGEDSELVE 896


>gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 884

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/927 (42%), Positives = 556/927 (59%), Gaps = 82/927 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ V+ +PD  +D +MEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       Y +G DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDILS   R+  II  EL ++K E        RRT +     D+ 
Sbjct: 482 IVAEYKDIMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D  ++  + +
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPL-GRAARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+  D+I+L++DKG L+R  V EIR   RAT+GV + +  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDE 846

Query: 888 DERVVSVERIRESE-----IVDEAEST 909
             ++  ++RI E++       D+A S+
Sbjct: 847 GAKLSGLQRIVENDANPPAADDDAPSS 873



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 94/241 (39%), Gaps = 14/241 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               +  V   + +G VK+  L  +   R+GG     +   D D++    +      V+ 
Sbjct: 655 TFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGQHDVML 712

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G   +     +      ARG   +    + +  +    M   ED        V+ A
Sbjct: 713 FSDGGKAVRFDENDVRPLGRAARGVRGM----MLEDGQSVIAMLVAED----ETQSVLTA 764

Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R  + ++ +  R   G IA++      ++++      E++I+L T  G  VR 
Sbjct: 765 TENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRT 824

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ IR   GR + GV  I+L +G ++  +  ++  DA+           +      S  
Sbjct: 825 RVAEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANPPAADDDAPSSTTPDADGSAT 883

Query: 769 T 769
            
Sbjct: 884 E 884


>gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 877

 Score =  923 bits (2386), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREELELIRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ I                                             
Sbjct: 723 GIKLAENDSVVSLII--------------------------------------------- 737

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 738 --------PRGEGAILTVTQNGYGKRTAAAEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E    +E
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEE 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/429 (15%), Positives = 139/429 (32%), Gaps = 35/429 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +IR        RR  +  +   
Sbjct: 470 EHEKLLDEYKELLEQIAELLHILGSADRLMEVIREELELIR--DQFGDERRTEITANSAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  L++ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+      E  +  
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGVN-- 645

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS
Sbjct: 646 -----VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + K   +      A G   I         ++                 ++  T+
Sbjct: 699 AAGKVVRFKEDAVRAMGRTATGVRGI---------KLAENDSVVSLIIPRGEGAILTVTQ 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   +++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGYGKRTAAAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ + V+ +  V     D +              +      
Sbjct: 810 SEV-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSAAEGDDDIAPEADT 868

Query: 771 EITSLKNDS 779
           +    +++ 
Sbjct: 869 DDDIAEDEE 877


>gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666]
 gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666]
          Length = 880

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/923 (43%), Positives = 565/923 (61%), Gaps = 77/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS QEP+V+  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEI+  PDFPTG +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHMLKNPEASIDELMEIVPAPDFPTGGIIYGINGVKDGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F++ R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIQVFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+ ELM R W++S ++
Sbjct: 362 VTRRTVFTLRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMLRPWDSSLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                      ++ +GSDG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +  EI + LDIL+   R+  II +EL ++K E        RR++I     D+ 
Sbjct: 482 IVAEYKEVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQTKLGARRSQIEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++P   E  S   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLPLTGEKRSFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTTLDEFSNPRKAGIIAVDLDDGDYLIGASLTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG++L  G  VI+M +                           
Sbjct: 722 FDENDVRPM-GRNARGVRGMTLEDGQGVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       ++Q +LT ++ G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------EQQSVLTATQNGYGKRTSITEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV +    +
Sbjct: 789 IAIQQSERN--GKVVAATLVHVDDEIMLITDKGVLVRTRVSEIREMGRATQGVTLIGLDE 846

Query: 888 DERVVSVERIRESEIVDEAESTE 910
             ++  ++RI E++   +    E
Sbjct: 847 GSQLSGLQRIVENDATLDDNDVE 869


>gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1]
 gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae]
 gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1]
          Length = 869

 Score =  923 bits (2385), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/906 (43%), Positives = 559/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849


>gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
          Length = 896

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/908 (45%), Positives = 569/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M++ DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSARGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA                           +S++    +   E       +SSV
Sbjct: 722 TGVRGIKLA------------------------TTEISSEEIEEAEIVEIENEEAEESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  + ++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 776 ILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEEADQIMLITDAGT 835

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +         + +   
Sbjct: 836 LVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDENSEALDNVENTETST 894

Query: 765 IS 766
            +
Sbjct: 895 EA 896


>gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
 gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252]
          Length = 853

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/894 (41%), Positives = 529/894 (59%), Gaps = 62/894 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I +EM++SY+ Y+++VI+GRA+PD+RDGLKPVHRR+L+GM ++G+  + 
Sbjct: 2   EAEKPRIIPVNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD+++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ KDTVDF+ N+DGS +EPVVL A  PN++VNG  GIAVGMAT 
Sbjct: 122 YTEARLTRLAEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATK 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE VD  VA+IDNPDI LD L++ +  PDFPTG +I G +G+K AYATGRG I+
Sbjct: 182 IPPHNLGEAVDALVAMIDNPDISLDELLKHLPAPDFPTGGIIYGYSGVKEAYATGRGRIL 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   H E+    R  +V+TEIPYQVNK++++EKIA LVRE+RI  I D+RDESDR+G R
Sbjct: 242 IRARIHEEEIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+EL++ A   VI NQLY+YT  Q  F VNMVAL   +P   TL  +++ ++  R EVV
Sbjct: 302 VVLELRKDAVPLVIQNQLYKYTPCQQTFGVNMVALVNGRPRTLTLKELMRHYLDHRHEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA +RAH+L GL IA+ +LD V+ IIR+S +P+ AR+ LM+         +
Sbjct: 362 TRRTRFELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPE 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
             + +      +       L+E Q  AIL LRL+RLTGL R  +  E  +L  EI+    
Sbjct: 422 QRERLGLP---VEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRS 478

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S      II++ELL +K +    RRT I   G  D   ED I  E +VVT+SH G +
Sbjct: 479 ILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQVVVTLSHQGLI 538

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+ +YR Q RGG G     MR++D++  LF    H  +LFF+  G  Y  +V+ +P 
Sbjct: 539 KRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPE 598

Query: 609 GSPQARGKALINILSLNQGERITTIMPF----PEDESSWNNLYVVFATKHGNVRRNKLSD 664
           GS  + G+++ N++ +   +R+  ++       E+       YV+ AT+ G V++ +L  
Sbjct: 599 GSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQGLVKKTELEA 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G IA+     DE++          +LL +  G+ VRF  S +R   GRN+ GV
Sbjct: 659 FSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPM-GRNTRGV 717

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L  G+QV+ M  V                                           
Sbjct: 718 RGIALETGEQVVGMVAVSP----------------------------------------- 736

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          IL++S  G+GKRT   ++ +  R GKG+    ++     G L+A+
Sbjct: 737 ----------EASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR--TGRLIAI 784

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V D D +++++  G +IR+ V +I    R T+GV +      + +  V R+ 
Sbjct: 785 KAVQDTDDLMIITQNGLMIRIHVADISRMGRHTQGVRLIQLKPGDAIADVTRLV 838



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 6/168 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A++   +                R  +    ++    +          +   ++L   EQ
Sbjct: 468 ALLQEIERLRSILASEPLRWQIIREELLELKQKYADARRTEIDYAGGGDFAIEDLIEDEQ 527

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++T+S +G  KRT  + +R   R G G++A+ + + + I  L A     ++D ++  +D
Sbjct: 528 VVVTLSHQGLIKRTPVHIYRQQGRGGVGMKASGMREDDYIEHLFACK---NHDYLLFFTD 584

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903
            G    + V +I   SR + G  I +    A D+RV +V  IR+ +  
Sbjct: 585 HGRCYWLRVYDIPEGSRTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFE 632


>gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
 gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1]
          Length = 889

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/919 (42%), Positives = 566/919 (61%), Gaps = 77/919 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 24  DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 84  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN
Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 204 IPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 383

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S ++
Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 443

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 444 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 504 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  A
Sbjct: 624 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 680

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 681 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 740

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L +G QVI++ +                               
Sbjct: 741 DVRPM-GREARGVRGMQLDEGQQVIALLV------------------------------- 768

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 769 ---------------------AGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 807

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 808 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 865

Query: 892 VSVERIRESEIVDEAESTE 910
             +++I E+E  D  E+ E
Sbjct: 866 SGLQQIAEAEDGD-GEADE 883


>gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 900

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 635/894 (71%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQK +HFLL+D+ +DTV+FRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 ELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T+LF+ +THTS+LFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSLLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L+  E IT IMP P +     N  +VFAT +GN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLSDSETITNIMPLPSEN--DENQNIVFATAYGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K 
Sbjct: 660 KIAIKLDEGDKLVSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A+R L +     I S    +  +  I  E   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAVNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890


>gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
 gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149]
          Length = 912

 Score =  923 bits (2384), Expect = 0.0,   Method: Composition-based stats.
 Identities = 471/919 (51%), Positives = 620/919 (67%), Gaps = 18/919 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++     D ++E           SVSI  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPQPPDSDDEMRPERPVYDGPSVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M + G   +K Y K AR  G+VMG+YHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRILFAMHETGNTHDKSYRKSARPVGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE R+ K A +LL D+ KDTV+++ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDNPAAMRYTEVRMDKPAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+I+ PD+  + L++ + GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RTG + AY  GRGS++IR  + +E+   DR  IVV EIPYQVNKA M+EKIAE VREK+I
Sbjct: 241 RTGARKAYLEGRGSVIIRAKTRVEEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+ ++DESDR G RVV+ELKR A+A+V++NQLYR+T LQ+ F  NM+ALNG +PE+ T
Sbjct: 301 EGISHVQDESDRNGVRVVVELKRDATAEVVMNQLYRFTPLQTYFGCNMLALNGGRPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L  F+ FREEVV RRT YLL KAR+R+HVL GLA+AV N+DEVV  IR S +   A
Sbjct: 361 LRKFLTYFIDFREEVVARRTAYLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A DI   I LIDD ++T   DGT  LSE Q RAIL+LRL RLT +G  ++
Sbjct: 421 RSKLMTRRWPAQDILPYIALIDDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +IKE LDIL SR R++ II  EL  V++    PRRT IV+   DMEDED I
Sbjct: 481 TDELEELAGKIKEYLDILGSRDRIMSIISDELREVRELFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            REDMVVTV+  GY+KR PL+ +R+QRRGGKG SG  ++++D VT LF+ +THT +LFF+
Sbjct: 541 AREDMVVTVTQGGYIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  YK K WRLP G   ++GKA+INIL + QG  I  I+P   DE  W+ L +VFAT 
Sbjct: 601 TDGMAYKLKTWRLPQGGRTSKGKAIINILPIPQGVSIAAILPIDRDEKDWSELQIVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRN LSDF  +  +GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNALSDFTNVKSNGKIAMKFEDEHAETTLINARIASPDDDVMLVTASGRAIRFPS 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R+SVGVRG+ L   D+V+SM+++ H +A  DER+ Y+K   A   L      
Sbjct: 721 TDVRVFNSRSSVGVRGVRLTGDDKVVSMSVIRHFNATSDERVAYLKMRRAMAGLA----- 775

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              +   +    G   E    ++   E  ILT++ +G GK +SS+D+ +  R G G++A 
Sbjct: 776 -DDAEIEEEETTGESVEIDYAKMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVQAM 834

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F+T K E 
Sbjct: 835 D--KAMRGGPIVASFPVEMDDQIMLATSKGQSIRVPVEGISFRSRSAGGVKVFNTGKGEE 892

Query: 891 VVSVERIRESEIVDEAEST 909
           VVSV  I +    +  +  
Sbjct: 893 VVSVAWIADQGEEETGDDE 911


>gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15]
          Length = 873

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/910 (43%), Positives = 567/910 (62%), Gaps = 71/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVVNGCLALIDNPDLTIDELMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRIYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE     +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G R
Sbjct: 243 RARHEIEHDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DV++N L+  T L+++F +NMV L   +P+   L  +L AFV  R EVV
Sbjct: 303 VVIELRRGENPDVVVNNLFAQTQLETVFGINMVGLINGEPKTLNLKQLLDAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+   A+ +L+ + W+  D+  
Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL    RLL +I++EL ++  E    RRT I     D+   D I  ED+VVT
Sbjct: 483 DKIADLLDILGDPERLLQVIREELEAIVTEFGDERRTEITSSRRDLTIADLIDEEDLVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  +RG+ ++NIL L++GERITT +P  +      + +V+ AT  G V++  
Sbjct: 603 RVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYP---EDQFVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++       + +++L +  G+ VRF   A+R  + R +
Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITKGDAEVMLFSTAGKAVRFNEEAVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI + +G  V+S+ I                                         
Sbjct: 719 RGVRGIKMPQGHHVVSLIIPQDGGV----------------------------------- 743

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             ILT SE G+GKRT+  +F   +R  +G+ A   S+ N  G L
Sbjct: 744 ------------------ILTASENGYGKRTAIDEFPTYSRGSQGVIAMQCSERN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           V    + D D+++L+SDKGTL+R   +E+ + SR T+GV +   + +DER+V VERI E+
Sbjct: 784 VTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843

Query: 901 EIVDEAESTE 910
           +  DE   +E
Sbjct: 844 D--DEELDSE 851


>gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 934

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/949 (42%), Positives = 574/949 (60%), Gaps = 116/949 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+V+GC+A+I+N ++ +D LM  I GPDFPTGA+I GR GI  AY TGRGS+ +R  +
Sbjct: 187 LTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V E+PYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG S +++LN LY++T LQ+ F +NMVAL+  +P+   L  IL AF+  R EVV RRT
Sbjct: 307 IKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+ +L+ R W   ++  +++ 
Sbjct: 367 VFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLEK 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  +L+E Q +AIL+LRL +LTGL    I  E  SL   I 
Sbjct: 427 AGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+SH 
Sbjct: 487 ELLFILASPERLMEVIRDELLAVREQYGDERRTEISASSAEINIEDLITPEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  P++ Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV++
Sbjct: 547 GYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L +GERIT I+P  E     ++ YV FAT  G V++  LS F
Sbjct: 607 LPEASRGARGRPIINLLPLEEGERITAILPVKEYA---DDKYVFFATADGTVKKTSLSAF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
            +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   +             
Sbjct: 664 SRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSGRADAADADVSDD 723

Query: 713 -----------------------------------IRVFAGRNSVGVRGISLAKGDQVIS 737
                                              +R   GR + GVRGI L  GD+V+S
Sbjct: 724 VDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPM-GRTAGGVRGIRLLNGDKVVS 782

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + +     A                                                   
Sbjct: 783 LIVPRGEGA--------------------------------------------------- 791

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILT +E G+GKRT+  ++   +R  +G+R+  V + N  G ++    V+D DQI+L++
Sbjct: 792 --ILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERN--GKVIDAIQVDDTDQIMLIT 847

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + GTL+R  V+E+ I  R T GV +  T +DE VV ++RI ES+  +  
Sbjct: 848 NGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESDEEEND 896



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQ 704
           ++ AT++G  +R  L+++   +R   G  ++K+D    +++        + I+L T  G 
Sbjct: 792 ILTATENGYGKRTALTEYPTKSRGTQGVRSIKVDERNGKVIDAIQVDDTDQIMLITNGGT 851

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  +S +    GRN+ GVR I   + + V+ +  +  +D + ++ +     +S     
Sbjct: 852 LVRTRVSEV-SIIGRNTGGVRLIRTGEDETVVGLQRIAESDEEENDVMAIDGEVSEGTDT 910

Query: 765 ISGDTEEITSLKNDSSVEGNISEE 788
                         S+ EG  S+E
Sbjct: 911 APDAGSAAAGSFEGSTEEGAASDE 934


>gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
 gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755]
          Length = 888

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/902 (46%), Positives = 570/902 (63%), Gaps = 35/902 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   +K 
Sbjct: 3   ELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +
Sbjct: 183 PPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ + D SD++G  +
Sbjct: 243 RAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV 
Sbjct: 303 VIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R W+  ++  +
Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E   L +
Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  +K E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L        T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  +A+R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L                          +        +  +T E    +  SSV
Sbjct: 722 TGVRGIKL-----------------------ATTEISVDDAEEVDIETVENEEAEEASSV 758

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                +     +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA+DE VVS+ERI E E
Sbjct: 817 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876

Query: 902 IV 903
             
Sbjct: 877 DD 878



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +   S D  L  +   QE+ ++  +  G     P+S       R   G     + + D +
Sbjct: 520 ITAASGDINLE-DLIAQEDVVVTLSHAGYVKYQPLSDYEA-QRRGGKGKSATKMKEDDFI 577

Query: 736 ISMAIVLHADA-------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + +    D            ++   +   A R         I  L    +        
Sbjct: 578 EKLLVANTHDTILCFSSCGRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILP 637

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   ++FI   +  G  K+ S   F  SN    G+ A  + +      L+ V   N
Sbjct: 638 VPNGEFSADKFIFMATASGTVKKVSLDAF--SNVRSSGLIALKLREG---DELIGVDITN 692

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              +I+L S +G ++R     +R   R   GV     A  E  +SV    ++E VD
Sbjct: 693 GESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTE--ISV---DDAEEVD 743



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  L ++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 777 ILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEENDQIMLITDAGT 836

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            VR  ++ +    GRN+ GVR I  A+ + V+S+  +   + D  E +   + 
Sbjct: 837 LVRTRVNEV-SLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSVEEA 888



 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAI 740
           D+++S+     + +IL  T+ G   R  +        R + GV  I + +   +V++   
Sbjct: 763 DKVVSLVIPHTQGEILTVTQNGYGKRTALGEY-PVKSRATKGVVSIKVNERNGKVVAAVQ 821

Query: 741 VLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           V   D          +         + G   +   +   +  E  +S ER  E++     
Sbjct: 822 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIE 881

Query: 800 ILTVSE 805
            L+V E
Sbjct: 882 NLSVEE 887


>gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
 gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822]
          Length = 893

 Score =  922 bits (2383), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/911 (42%), Positives = 549/911 (60%), Gaps = 78/911 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++  +D                  Y +  DG   LSE Q + IL +RL RLTGL +D I
Sbjct: 422 EMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR  I     +++ 
Sbjct: 482 IGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +
Sbjct: 542 EDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE++T ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFS---EDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GRN+ GVRG+ L +G  VI++ +                             
Sbjct: 719 ENDVRPM-GRNARGVRGMMLEEGQTVIALLV----------------------------- 748

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V EIR   RAT+GV + S     
Sbjct: 786 IQTSSRN--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGS 843

Query: 890 RVVSVERIRES 900
            +  V R+ ES
Sbjct: 844 SLSGVRRVVES 854



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + L      + D++I      MA +                +S + + I  +        
Sbjct: 468 MRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDT 527

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +E N +E   ++L      ++T+S  G+ K     ++R   R G+G +AT + + +
Sbjct: 528 RRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893
            +  L   F  N +D ++  S++G +  + V E+   +R ++G  I +    A  E+V  
Sbjct: 588 WVDQL---FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTV 644

Query: 894 VERIRESEIV 903
           V  ++E    
Sbjct: 645 VLPVKEFSED 654



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 135/410 (32%), Gaps = 27/410 (6%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    ++I+     +D        D  + L
Sbjct: 495 LLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 554

Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           S     + Q  +    +     G     ++       + I    D L   S    +   +
Sbjct: 555 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 614

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556
           +  V       R   IV      + E             +  V   +  G VK+ PLS +
Sbjct: 615 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 674

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R+ G     +   D D++    +      V+ FS  G   +     +      ARG 
Sbjct: 675 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG- 731

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
             +  + L +G+ +  ++   +         V+ AT++G  +R  ++++ +  R  K  +
Sbjct: 732 --VRGMMLEEGQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKGMI 784

Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +        ++        ++I+L T  G  VR  ++ IR   GR + GV  IS+  G 
Sbjct: 785 AIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLISVDDGS 843

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            +  +  V+ +DAD D+                 DT         +    
Sbjct: 844 SLSGVRRVVESDADADDEDGGEDLGEEGGDQGGDDTGAQGKDSEPTEPTE 893


>gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42]
 gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42]
          Length = 888

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/914 (41%), Positives = 551/914 (60%), Gaps = 77/914 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 13  TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 72

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 73  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 132

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 133 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 192

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  PD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 193 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 252

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 253 MRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 312

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 313 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIEVFLQHRREV 372

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  ++
Sbjct: 373 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 432

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +   G   LS+ Q + IL++RL RLTGL +D 
Sbjct: 433 EMLTRTRADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDK 492

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+  +R+  II +EL +++ E        RR+ I     D+ 
Sbjct: 493 IVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLS 552

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 553 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDY 612

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P      +   + Y
Sbjct: 613 ILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADHY 672

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 673 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 732

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GVRG+ L  G  VI+M +                           
Sbjct: 733 FDENDVRPL-GRQARGVRGMMLEDGQSVIAMLVAED------------------------ 767

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 768 ----------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGM 799

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 800 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 857

Query: 888 DERVVSVERIRESE 901
             ++  ++RI E++
Sbjct: 858 GAKLSGLQRIVEND 871



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 14/222 (6%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               +  V   + +G VK+  L  +   R+GG     +   D D++    +      V+ 
Sbjct: 666 TFPADHYVFMATSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGQHDVML 723

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G   +     +     QARG   +    + +  +    M   ED     N  V+ A
Sbjct: 724 FSDGGKAVRFDENDVRPLGRQARGVRGM----MLEDGQSVIAMLVAED----ENQSVLTA 775

Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R  + ++ +  R   G IA++      ++++      +++I+L T  G  VR 
Sbjct: 776 TENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRT 835

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +S IR   GR + GV  ISL +G ++  +  ++  DA+  +
Sbjct: 836 RVSEIREL-GRATQGVTLISLDEGAKLSGLQRIVENDANATD 876


>gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
          Length = 896

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/908 (46%), Positives = 569/908 (62%), Gaps = 36/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             D   YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLRILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M++ DF+  L I +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDSFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D                        +S++    +   E       +SSV
Sbjct: 722 TGVRGIKLATTD------------------------ISSEEIEEAEIVEIENEEAEESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V + DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEEADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEPD 875

Query: 902 IVDEAEST 909
             DE    
Sbjct: 876 DEDENSEA 883



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 26/257 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+V L  +   R  G     + +R+ D +  + I    + ++ F
Sbjct: 643 FSADKFIFMATASGVVKKVSLDSFSNVRSSG--LIALKLREGDELIGVDITDGESEIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------- 635
           S+ G V +     +      A G   I + + +                           
Sbjct: 701 SAQGRVVRFAEKAVRAMGRTATGVRGIKLATTDISSEEIEEAEIVEIENEEAEESSVSLD 760

Query: 636 ---FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVET 689
                          ++  T++G  +R  + ++   +R+ K  + +   +   ++++   
Sbjct: 761 TDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERNGKVVAAVQ 820

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + + I+L T  G  VR  ++ +    GRN+ GVR I  A  + V+S+  V   D + +
Sbjct: 821 VEEADQIMLITDAGTLVRTRVAEV-SLVGRNTQGVRIIRTADDESVVSVERVCEPDDEDE 879

Query: 750 ERICYMKHMSAQRRLIS 766
                    S +    +
Sbjct: 880 NSEALDNVESTETSTEA 896


>gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 902

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/910 (43%), Positives = 563/910 (61%), Gaps = 62/910 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQAAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K AH LL DL K+TVDF PNYDGS +EP++L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRLRKIAHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV  C+ V+ NP+  +D L+EII  PDFPT  +I G   ++  Y TGRG +V
Sbjct: 182 IPPHNLDEVVTACLHVLHNPECTIDELIEIIPAPDFPTAGIIYGVQRVREGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E      R+ I+V E+PYQVNK  +LE+IAELV EK++  I+DLRDESD+ G 
Sbjct: 242 MRAKTHFEDLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDNFGMNMVALVDNQPRLLNLKQMLEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR H L GLA+A+AN+DE + II+ + NP  A++ELM ++W++S ++
Sbjct: 362 VTRRTIFELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVR 421

Query: 429 DLIDLIDD---------------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   +                  Y + + G   LS+ Q + IL++RL RLTGL +D I
Sbjct: 422 EMLARAETDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVEGLLDME 528
            NE   +  EI + LD+L+   R+  +I+ EL  V+ E      DT RR+ I     ++ 
Sbjct: 482 VNEYKEVMAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRRSFIEVNATELF 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  +D+VVT+S+ GY+K  PLS YRAQ+RGG+G+     ++ED++  LF+ +TH +
Sbjct: 542 TEDLITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDT 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L FS  G +Y  KVW +P GS  +RGK ++N+  L +GE+IT I+P        +N YV
Sbjct: 602 ILCFSDRGRMYWLKVWEVPQGSRTSRGKPIVNMFPLIEGEKITVILPIKGY---QDNQYV 658

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             AT  G V++ +LSDF    ++G IA+ L+  D ++       ++D++L +  G+ VRF
Sbjct: 659 FMATSLGTVKKTRLSDFSNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAGKAVRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R   GR + GVRG++L +G QVI+M +     A+  E      +  A        
Sbjct: 719 DENDVRPM-GRTARGVRGMNLGEGHQVIAMLVAPAEAAEGVEAAVVDANGIAIPSS---- 773

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +LT +E G+GKRT   ++    R  KG+ 
Sbjct: 774 -------------------------------VLTATENGYGKRTPITEYTRHGRGTKGMI 802

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A   S+ N  G +VA   V+  DQI+L++  G L+R  V+EIR   RAT+GV + +  + 
Sbjct: 803 AIQTSERN--GKVVAAALVSPEDQIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDEG 860

Query: 889 ERVVSVERIR 898
            R+  ++RI 
Sbjct: 861 TRLSGLQRIA 870



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 98/254 (38%), Gaps = 15/254 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   + LG VK+  LS +   R+ G     V + + DF+    I      V+ F
Sbjct: 652 YQDNQYVFMATSLGTVKKTRLSDFSNPRKAG--IIAVDLNENDFLVGAAITDGQHDVMLF 709

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN---------ILSLNQGERITTIMPFPEDESSW 643
           S  G   +     +      ARG   +N         +L               +     
Sbjct: 710 SDAGKAVRFDENDVRPMGRTARGVRGMNLGEGHQVIAMLVAPAEAAEGVEAAVVDANGIA 769

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700
               V+ AT++G  +R  ++++ +  R   G IA++      ++++    + E+ I+L T
Sbjct: 770 IPSSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAAALVSPEDQIMLIT 829

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  VR  +S IR   GR + GV  I++ +G ++  +  +  +D+D D        +SA
Sbjct: 830 TGGVLVRTRVSEIREM-GRATQGVTLINVDEGTRLSGLQRIAESDSDEDTDDAEGGDISA 888

Query: 761 QRRLISGDTEEITS 774
                S D     +
Sbjct: 889 DPATDSNDDTAGDA 902


>gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
 gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516]
          Length = 903

 Score =  922 bits (2382), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/895 (53%), Positives = 631/895 (70%), Gaps = 8/895 (0%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S+SI +EM+ SYL YA++VI+ RAIPDLRDGLKPVHRRIL+ + + G   NK Y KC   
Sbjct: 12  SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+VMG+YHPHG++AIYDAL RMAQD+S+ L LI+GQGNFGS+DGDPPAA RYTE RL+K
Sbjct: 72  VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           +A  LL D+ KDTVDF PNY     EP VL ARYPN+LVNG  GIAVGMAT IP HNLGE
Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVD  +A+IDNPD+  + L++ I  PDFPTG +ILGR+G + AY  GRGS+VIR  +  E
Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLILGRSGARKAYTEGRGSVVIRCKTRTE 251

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   DR  IV+ EIPYQVNKA M+E+IAE  REKRI  IA ++DESDR G RVVIELKR 
Sbjct: 252 EIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+ +V+LNQL+R+T +Q  F+ NM+ALNG KPE  TL G L AF+ FRE+VV +RT + L
Sbjct: 312 ATPEVVLNQLFRFTPMQVSFACNMLALNGGKPETLTLRGFLTAFLDFREDVVAKRTAFEL 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKAR+R+H+L GLA+AV+N+DEVV  IR S +   AR++LM+R W A +I   I LIDD 
Sbjct: 372 NKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLIDDP 431

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
           ++ +  DGT  LS+ Q RAIL+LRL RLT LG  ++ +EL +L  +I+E LDIL SR R+
Sbjct: 432 THKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSRERI 491

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L I+  EL  V++    PRRT IV+   DMEDED I REDMVVTV+  GY+KR  L+ +R
Sbjct: 492 LSIVSDELREVRERHAVPRRTEIVDWSGDMEDEDLIEREDMVVTVTQGGYIKRTALADFR 551

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGGKG SG  +++ED VT LF+ +THT +LFF++ G VYK K WRLP+G   +RGKA
Sbjct: 552 SQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPLGGRTSRGKA 611

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL +  G  I  IMP   DE  W++L +VFAT  G+VRRN+LSDF  + R+GKIAMK
Sbjct: 612 IVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFTNVMRNGKIAMK 671

Query: 678 LDSR--DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L       +++   C++++D++L T  G+ +RFP++ +RVF+GR+S GVRGI L  GD+V
Sbjct: 672 LPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGVRGIRLQNGDKV 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +SMA++ H +A  +ER+ Y+K     RR   G T+E  S   D    G +  +R  E+  
Sbjct: 732 VSMAVIRHFEASPEERVAYLK----MRRAQMGMTDETESDDEDQVEAGQLPLDRFAEMSA 787

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            E  +LT++ KG GK +SS+ + +  R G+G+ A    K    G +V+VFPV  +DQI+L
Sbjct: 788 AENLLLTITAKGQGKLSSSHGYPVRGRGGQGVSA--TDKAMRGGPIVSVFPVELDDQIML 845

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           V+++G  IRVPV+ I   SR+  GV +F+TAK E VVSV  I E    DE    +
Sbjct: 846 VTNQGQSIRVPVDGISFRSRSAGGVRVFNTAKGEEVVSVAWIAEQADEDEPGEGD 900


>gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
 gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I]
          Length = 893

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/911 (42%), Positives = 549/911 (60%), Gaps = 78/911 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVR 421

Query: 429 DLIDLID---------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++  +D                  Y +  DG   LSE Q + IL +RL RLTGL +D I
Sbjct: 422 EMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR  I     +++ 
Sbjct: 482 IGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +
Sbjct: 542 EDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE++T ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFS---EDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GRN+ GVRG+ L +G  VI++ +                             
Sbjct: 719 ENDVRPM-GRNARGVRGMMLEEGQTVIALLV----------------------------- 748

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V EIR   RAT+GV + S     
Sbjct: 786 IQTSSRN--GRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGS 843

Query: 890 RVVSVERIRES 900
            +  V R+ ES
Sbjct: 844 SLSGVRRVVES 854



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + L      + D++I      MA +                +S + + I  +        
Sbjct: 468 MRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDT 527

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +E N +E   ++L      ++T+S  G+ K     ++R   R G+G +AT + + +
Sbjct: 528 RRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893
            +  L   F  N +D ++  S++G +  + V E+   +R ++G  I +    A  E+V  
Sbjct: 588 WVDQL---FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTV 644

Query: 894 VERIRESEIV 903
           V  ++E    
Sbjct: 645 VLPVKEFSED 654



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/410 (17%), Positives = 136/410 (33%), Gaps = 27/410 (6%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  D +  II        A      +    ++I+     +D        D  + L
Sbjct: 495 LLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 554

Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           S     + Q  +    +     G     ++       + I    D L   S    +   +
Sbjct: 555 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 614

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556
           +  V       R   IV      + E             +  V   +  G VK+ PLS +
Sbjct: 615 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 674

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R+ G     +   D D++    +      V+ FS  G   +     +      ARG 
Sbjct: 675 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG- 731

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
             +  + L +G+ +  ++   +         V+ AT++G  +R  ++++ +  R  K  +
Sbjct: 732 --VRGMMLEEGQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKGMI 784

Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +        ++        ++I+L T  G  VR  ++ IR   GR + GV  IS+  G 
Sbjct: 785 AIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLISVDDGS 843

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            +  +  V+ +DAD D+     +           DT         +    
Sbjct: 844 SLSGVRRVVESDADADDEDGGEEGGEEGGDQGGDDTGAQGKDSEPTEPTE 893


>gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str.
           8004]
 gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris]
          Length = 899

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/908 (43%), Positives = 566/908 (62%), Gaps = 32/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR L+++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDIEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LAKG++V+S+ +                  S +   +  + E+ ++ +   + +
Sbjct: 719 GVRGIRLAKGEEVVSLIV------------------SERAGGVEDEVEDESAEEVVETTD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G               +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGSTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLE 878

Query: 903 VDEAESTE 910
             E    E
Sbjct: 879 EPEDVVDE 886



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              +   + +  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + ++ 
Sbjct: 825 STDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLEEPEDV 883

Query: 752 ICYMKHMSAQRRLISG 767
           +     +++      G
Sbjct: 884 VDEAVAITSDAPPAEG 899


>gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
 gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida]
          Length = 908

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/896 (51%), Positives = 634/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 10  GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 70  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 190 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 429

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + D S  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 430 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L TPR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 489 DSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 548

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 549 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 608

Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP    +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 609 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 668

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 669 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 728

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 729 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 787

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 788 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 845

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 846 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 901


>gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
 gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25]
          Length = 884

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/911 (45%), Positives = 564/911 (61%), Gaps = 70/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSMIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG+ L+N+L L+  E ITT++P  E        ++  AT  G V++ 
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYT---EGHFIFMATAKGTVKKT 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR 
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G ++ISM I                                        
Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +   ILT SE+G+GKRT+  +F    R G+G+ A   +  N  G 
Sbjct: 739 -------------PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GR 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE- 899
           LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   AKDE++V +ER++E 
Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQEP 843

Query: 900 SEIVDEAESTE 910
           SE+  EA   E
Sbjct: 844 SEVEGEALEGE 854



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 139/426 (32%), Gaps = 30/426 (7%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L   +  A     L      +  +   +R           +     +    + L   +D 
Sbjct: 470 LEHEKLLAEYQEILNQIGELIRILSSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDL 529

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
           +   +  +    ++           LA      R    ++       +    L + +S +
Sbjct: 530 TLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHT 589

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            LL    +  +      + P  +R   G   +        E +   +             
Sbjct: 590 TLLLFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFM 649

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+ PL  +  QR  G     + + + D +    I      V+ FS  G V + 
Sbjct: 650 ATAKGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVMLFSDGGKVTRF 707

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +      ARG   +  + L +G+++ +++             ++ A++ G  +R  
Sbjct: 708 KESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGYGKRTA 758

Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +S+F +  R G+  + + S D     +         +I+L +  G  VR  ++ +    G
Sbjct: 759 ISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSL-G 817

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GV  I LAK ++++ +  V        E +   +           + +E T     
Sbjct: 818 RNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEALEGEEFEGEVIAAGDDNVDEPTLDAAA 877

Query: 779 SSVEGN 784
              E  
Sbjct: 878 DEEEPQ 883


>gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069]
 gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069]
          Length = 879

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/896 (44%), Positives = 556/896 (62%), Gaps = 68/896 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G ++NK 
Sbjct: 3   ELAKEILPINIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF  NYDGS  EP VL  R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMDKLAHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A+IDNPDI +  LME I+GPDFPT A+I GR GI +AY TGRG I +
Sbjct: 183 PPHNLTEVIDGCLALIDNPDITIPELMEYIKGPDFPTAAIINGRAGIIDAYHTGRGKIYL 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E      ++ IVVTE+PYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R
Sbjct: 243 RSRSHVETDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL++G   +V+LN LY  + +Q++F +NMVAL+  +P  F L   + AFV  R EVV
Sbjct: 303 MVIELRKGEVPEVVLNNLYAQSQMQNVFGINMVALDNNQPRLFNLKDAIDAFVTHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR++AHVL GLAIA+AN+D ++ +I+ SP P+ A+  LM R W    +  
Sbjct: 363 TRRTIFELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVST 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++      +             DG   LS+ Q +AIL+LRL +LTGL  D I  E   L 
Sbjct: 423 MLARAGTEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+E L IL S  RLL +I++EL  V++     RR+ I++  LD+   D I  ED+VVT
Sbjct: 483 GLIEELLRILMSTERLLEVIREELEEVRENFGDERRSEILDSKLDLTIADLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y+AQRRGG+G+S   M+DEDF+  L + STH ++L FSS G VY  
Sbjct: 543 LSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP     +RGK ++N+L L  GERI  I+P  E      + +V  AT +G V++  
Sbjct: 603 KVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFS---EDKFVFMATANGTVKKTS 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F +   +G IA+ +   DE++ V      N I++ +  G+ +RF  + +R   GR +
Sbjct: 660 LEQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L +G +VI M +                                         
Sbjct: 719 RGVRGMKLPEGAKVIQMIV----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++  +LT +E G+GKRT+  D  +  R G+G+ +  +S+ N  GA+
Sbjct: 738 ------------AEEDGSVLTATENGYGKRTAMEDHPLRGRGGQGVISIQMSERN--GAV 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  PV D D+++L+S  GTLIR  V++IRI  R T+GV +      E +V ++RI
Sbjct: 784 VSAVPVIDGDEVMLISKGGTLIRTGVDDIRIMGRNTQGVRLIKLDDGETLVGLQRI 839



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 98/252 (38%), Gaps = 15/252 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L  +   R  G     +   D+D +  +        ++ F
Sbjct: 640 FSEDKFVFMATANGTVKKTSLEQFSRPRSNGIIALTIA--DDDELIGVVETDGSNHIMMF 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G V +     +      ARG   +  + L +G ++  ++       +  +  V+ AT
Sbjct: 698 SDAGKVIRFDEANVRGMGRTARG---VRGMKLPEGAKVIQMI------VAEEDGSVLTAT 748

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + D     R G+  + +        ++S       ++++L +K G  +R  
Sbjct: 749 ENGYGKRTAMEDHPLRGRGGQGVISIQMSERNGAVVSAVPVIDGDEVMLISKGGTLIRTG 808

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  IR+  GRN+ GVR I L  G+ ++ +  ++  + D D+     +    +        
Sbjct: 809 VDDIRIM-GRNTQGVRLIKLDDGETLVGLQRIVEIEDDEDDEDELEESEVVETSNNEESL 867

Query: 770 EEITSLKNDSSV 781
           +E  S +     
Sbjct: 868 DETDSQEAGDDE 879


>gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia]
          Length = 902

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/896 (51%), Positives = 634/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + D S  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 424 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L TPR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMDIVKQGLLDAKAKLATPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602

Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP    +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 781

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895


>gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
 gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616]
 gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616]
          Length = 867

 Score =  921 bits (2381), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/919 (42%), Positives = 566/919 (61%), Gaps = 77/919 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L +G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDEGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERIRESEIVDEAESTE 910
             +++I E+E  D  E+ E
Sbjct: 844 SGLQQIAEAEDGD-GEADE 861


>gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253]
          Length = 878

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469]
 gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia
           fergusonii ATCC 35469]
          Length = 878

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  ++ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As]
          Length = 868

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/908 (41%), Positives = 548/908 (60%), Gaps = 70/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ ++ NP   ++ LME +  PDFPT  +I G +G+++AY TGRG +V+R  
Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245

Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E     + + I+V E+PYQVNK  +LE+IAELV+EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F VNMVAL   +P    L  ++ AF++ R E++ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P  A+  L+ ++W   + + ++ 
Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425

Query: 433 LIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            ++        D             YLSE Q + IL++RL RLTGL +D I  E   +  
Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVME 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + LDIL+   R+  II  E+ +++ E    RR+ I     D++ ED I  +D+VVT+
Sbjct: 486 QIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTI 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PL+ YRAQRRGG+G+     +++D+V  LF+ +TH  +L FS+ G VY  K
Sbjct: 546 SHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+  P+G   +RGK L+N+  L  GE+ITT++P    +      YV  AT  G V++  L
Sbjct: 606 VYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFD---EQHYVFMATARGTVKKTPL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + F+    +G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + 
Sbjct: 663 TAFVNRRTAGIIAVALDEDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GREAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L     VI++ +                                          
Sbjct: 722 GVRGMQLEADQSVIALLVAED--------------------------------------- 742

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                        + Q +LT +E G+GKRTS  ++    R  KG+ A   S+ N  G +V
Sbjct: 743 -------------ETQSVLTATENGYGKRTSITEYTRHGRGTKGMIAIQTSERN--GKVV 787

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V  +D+I+L++D G L+R  V EIR   RAT+GV + +      ++ V+ + E++ 
Sbjct: 788 AACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEAD- 846

Query: 903 VDEAESTE 910
            DE   TE
Sbjct: 847 DDELPPTE 854



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 14/237 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL+ +  +R  G     V + ++D++    I      V+ F
Sbjct: 642 FDEQHYVFMATARGTVKKTPLTAFVNRRTAG--IIAVALDEDDYLIGAAITDGQHDVMLF 699

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   + +    + ++    +   ED        V+ AT
Sbjct: 700 SDAGKAVRFDEADVRPMGREARGVRGMQL----EADQSVIALLVAED----ETQSVLTAT 751

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++       ++I+L T  G  VR  
Sbjct: 752 ENGYGKRTSITEYTRHGRGTKGMIAIQTSERNGKVVAACLVRTSDEIMLITDTGVLVRTR 811

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  IR   GR + GV  I+L     +I +  V+ AD D                  +
Sbjct: 812 VEEIREM-GRATQGVTLIALDAKAHLIQVQPVVEADDDELPPTELPPAEDGGADTAA 867


>gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
 gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum 3TCK]
          Length = 892

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/899 (46%), Positives = 571/899 (63%), Gaps = 74/899 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+V+E
Sbjct: 246 ASIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +VILN LY  T LQ+ F +NMVAL+  +P+ F+L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFSLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAIA+ N+DE++ +I+ +P P+ AR EL+ R W   D+  +++ 
Sbjct: 366 IYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +              G  +L+E Q +AILELRL RLTGL  + I  E   L   I+
Sbjct: 426 AGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIE 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I+ EL +VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+    M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E E    + YV  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEEDERITAILPVREYE---ADKYVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFAG 718
            +   +G IA+ L   D ++ V+     +DI+L +K G+ VRF  SA       +R   G
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM-G 721

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ LA+GD+V+S+ +                                      
Sbjct: 722 RTAAGVRGMKLAEGDKVVSLIV-------------------------------------- 743

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             E  +LTV+E G+GKRT+  ++   +R+ +G+ +  VS  N  
Sbjct: 744 ---------------PHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN-- 786

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G++V      D D+ +++++ GTL+R  V E+    R T+GV +  TA++E VV ++RI
Sbjct: 787 GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEEELVVGLQRI 845



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R      +E  + +  + +     +   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 502 RDELYAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHEGYVKYQILSDYEAQRR 561

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG--- 879
            GKG  AT +   + I  L      N +D I+  S +G +  + V ++ +ASR  +G   
Sbjct: 562 GGKGKIATRMKDEDFIERL---LVANTHDTILCFSSRGRMYWLKVYQLPLASRTARGKPI 618

Query: 880 VVIFSTAKDERVVSVERIRESEIV 903
           V I    +DER+ ++  +RE E  
Sbjct: 619 VNILPLEEDERITAILPVREYEAD 642



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 74/435 (17%), Positives = 157/435 (36%), Gaps = 39/435 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP--ETARRELMQRSWNASDIKDLIDLI 434
           L + +    V+  L + + + + ++ +IR       E    E       AS   DL DLI
Sbjct: 474 LEEYKGLLDVIEELLLILGSPERLMEVIRDELYAVKEQFNDERRTEITAASHDIDLEDLI 533

Query: 435 DDSSYTIGSDGTMY-----LSEVQTRA-----ILELRLARLTGLGRDDIRNELNSLGIE- 483
                 +      Y     LS+ + +       +  R+     + R  + N  +++    
Sbjct: 534 TQEDVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFS 593

Query: 484 ---IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
                  L +            + ++++    +  R T I+              +  V 
Sbjct: 594 SRGRMYWLKVYQLPLASRTARGKPIVNILPLEEDERITAILPVRE-------YEADKYVF 646

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VK+ PL+ +   R  G     V +R+ D +  + I ++   ++ FS  G V +
Sbjct: 647 MATADGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDITNSTDDIMLFSKFGKVVR 704

Query: 601 EKVWRLPIGSPQARGK----ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
                   G    RG     A +  + L +G+++ +++         N   V+  T++G 
Sbjct: 705 FYESADENGKGGVRGMGRTAAGVRGMKLAEGDKVVSLI------VPHNEGDVLTVTENGY 758

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+++   +R+ +  + +   D     +        ++ ++ T  G  VR  ++ +
Sbjct: 759 GKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITNGGTLVRTRVAEV 818

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +    E    +    A       DT+   
Sbjct: 819 -SRVGRNTQGVTLIRTAEEELVVGLQRIDELEVVELEEDAIVDGEIAVDGEQVVDTDAAQ 877

Query: 774 SLKNDSSVEGNISEE 788
             + DS  +    EE
Sbjct: 878 QPEADSEQDEATDEE 892


>gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
 gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58]
          Length = 896

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 457/912 (50%), Positives = 619/912 (67%), Gaps = 25/912 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  + +D      I+ +SI DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETVLADP---SDISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  +N+ Y K AR+ GEVMGKYHPHG+++IYDALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  QESGFVYNRPYRKSARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K A  LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A IDNP I  D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    +E+  GDR  IV+T IPYQV K+ ++EKIAE  ++KR+  I+D+R
Sbjct: 238 YNTGRGSIIMRARHDVEEGRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   L  I++A
Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPEILGLRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEV+ RRTKY LNKARDRAH+L+GL +AV NLDEVV+IIR S +P  AR  L+ +
Sbjct: 358 FIKFREEVITRRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAK 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W   +I   + L++     I  D +  LS++Q RAIL+LRL RLT LGRD+I  EL  L
Sbjct: 418 EWPIGEIAPYLRLVEAIENDIDGD-SYRLSDIQVRAILDLRLHRLTALGRDEIGKELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL+ R +L  ++++EL +++ E  TPR + I      +EDED I REDMVV
Sbjct: 477 AEAITEYLAILADRVKLYAVMREELEAIEREFATPRLSEITAAADGIEDEDLIEREDMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTMQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I+T++P PEDE  W  L+V+FAT  G+VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETISTVLPLPEDEEEWGKLHVMFATAMGSVRRN 656

Query: 661 KLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +  F  +  +GKIAMK    D  D ++ V    + +D+LL T+ G+ +RF    +R F 
Sbjct: 657 SMDAFANVPSNGKIAMKFEGEDEDDRLIGVALLDESDDVLLATRQGKAIRFQAEDVREFQ 716

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RNS GVRG+ LA GD VIS++++  + AD ++R  Y++    +        +       
Sbjct: 717 SRNSTGVRGMKLADGDAVISLSVLHRSGADGEQREEYLRFAPWKPEKDGEMQD------- 769

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                    +     ++  EQFILTV   G+GK +S+Y++R + R G+GI   D    N 
Sbjct: 770 ---------QAMFARMQENEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRN- 819

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA FP    DQ++LV+D+  LIR+ ++ +R+  R + GV +F+ A +E VVS  +I
Sbjct: 820 -GPVVASFPATRADQLMLVTDQAKLIRMGLDSLRVIGRNSAGVRLFNVADNEHVVSAAKI 878

Query: 898 RESEIVDEAEST 909
            ESE   + +  
Sbjct: 879 EESEAEADLDGE 890


>gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
 gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries]
          Length = 908

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/895 (50%), Positives = 624/895 (69%), Gaps = 5/895 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 10  GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 70  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 130 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 190 LGEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  S     +  +
Sbjct: 370 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIEL 429

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              S  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+ 
Sbjct: 430 VSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILSTD 489

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV LS
Sbjct: 490 SLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKLS 549

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +R
Sbjct: 550 NYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSSR 609

Query: 615 GKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           G++L+NI  L+ GE IT++MP    +DE    NL VVFAT  GN+RRN LSDF  +  SG
Sbjct: 610 GRSLVNIFPLSDGETITSVMPLPSCDDEIGIANLDVVFATASGNIRRNALSDFQYVPSSG 669

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ G
Sbjct: 670 KIAMVLTPGDQLISAHVCGHADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSAG 729

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  E
Sbjct: 730 DQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFLE 788

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  DQ
Sbjct: 789 MACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTDQ 846

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 847 VMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 901


>gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
 gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1]
          Length = 886

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/914 (42%), Positives = 551/914 (60%), Gaps = 77/914 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ V+ +PD  +D +MEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVDGQPRLCNLRDLIVVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM R+W++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       Y +G DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II  EL ++K E        RRT +     D+ 
Sbjct: 482 IVAEYKDIMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHKLGMRRTLVEHSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D  ++  + +
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKGVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPL-GRAARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+  D+I+L++DKG L+R  V EIR   RAT+GV + +  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVAEIRELGRATQGVTLIALDE 846

Query: 888 DERVVSVERIRESE 901
             ++  ++RI E++
Sbjct: 847 GAKLSGLQRIVEND 860



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 97/243 (39%), Gaps = 14/243 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               +  V   + +G VK+  L  +   R+GG     +   D D++    +      V+ 
Sbjct: 655 TFPADRFVFMATSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGQHDVML 712

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS  G   +     +      ARG   +    + +  +    M   ED        V+ A
Sbjct: 713 FSDGGKGVRFDENDVRPLGRAARGVRGM----MLEDGQSVIAMLVAED----ETQSVLTA 764

Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708
           T++G  +R  + ++ +  R   G IA++      ++++      E++I+L T  G  VR 
Sbjct: 765 TENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEIMLITDKGVLVRT 824

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ IR   GR + GV  I+L +G ++  +  ++  DA+            +  +   G 
Sbjct: 825 RVAEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANPPAADTTDDAPPSDAQDADGP 883

Query: 769 TEE 771
           + E
Sbjct: 884 STE 886


>gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
 gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627]
          Length = 875

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   ++DEDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVEEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+ E VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEGENVVGLQRVAEPVDDED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDAID 852



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + ++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVEEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+G+ V+ +  V     D D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEGENVVGLQRVAEPVDDEDLDAIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E]
 gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A
 gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii]
 gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii]
 gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22]
 gi|1093608|prf||2104274A DNA gyrase
          Length = 905

 Score =  921 bits (2380), Expect = 0.0,   Method: Composition-based stats.
 Identities = 451/885 (50%), Positives = 632/885 (71%), Gaps = 8/885 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  V+I DEM+ SYL YA++VI+ RAIPD+RDGLKPVHRRI++ M + G   +K Y 
Sbjct: 6   SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG++AIYD+L RMAQD+SLRL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH L++D+ K TV F  NYDGS +EP VL A +PN+LVNG GGIAVGMATNIP 
Sbjct: 126 SRMAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C   IDN DI++  L+E+++GPDFPTG++ILG +GI++AY TGRGSI++RG
Sbjct: 186 HNLGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSIIMRG 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     R+ I++TEIPY VNKA ++EKIAE+V+EKRI  I+DLRDES++ G R+ I
Sbjct: 246 KAEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A+V+LNQ+Y  T LQ+ F V M+AL    P+   L  ++ AFV+FRE V+  R
Sbjct: 306 ELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLLNKARDRAH+L+GL IA++N+DE++ II+ S +   A++ELM R W   DI  LI 
Sbjct: 366 TIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIK 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+DD    +   GT+  +EVQ +AILE++L RLT + ++ +  +L  L  +I E L+IL+
Sbjct: 426 LVDD-KVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILA 484

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           SR+RLL I+K+EL+ VK+E  +PR T I  G  D + ED I RE+MVVTV+  GY+KRVP
Sbjct: 485 SRTRLLEILKEELIKVKEEFASPRLTSIEFGEFDQDIEDLIQREEMVVTVTLGGYIKRVP 544

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR+Q+RGGKGRSG+ MRDED  T +F+ STHT +LFFS++G VY  K+++LP+ +PQ
Sbjct: 545 LSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYKLPLSNPQ 604

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ ++NILSL + E IT IMP PE++  W++L ++FAT  GN+RR+ L DF +I  +G
Sbjct: 605 GKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMFATAKGNIRRSDLLDFKKIQSNG 664

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA++LD  D+++ V+ C ++  ILL TK G+ +RFP+ ++R+   R S GVRG+ LAK 
Sbjct: 665 KIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRIIKSRISDGVRGMKLAKE 724

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM ++   ++  ++R  Y+     +R  I+   E      N   +  N++ +   E
Sbjct: 725 DSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEE-----FNLEELGVNLNADSILE 779

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E+FILTV+E GFGKR+S+Y +RI++R G GI   D++  ++ G +V V PV  +D+
Sbjct: 780 MANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDIN--DKTGLVVGVMPVKMDDE 837

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++L+++ G LIR  +  +RI  R T GV++F    DE+VVSV  I
Sbjct: 838 LMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLI 882


>gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5]
          Length = 930

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 462/905 (51%), Positives = 624/905 (68%), Gaps = 12/905 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE     +      +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEIPDPPEPPAPSDMIPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  E++D  +A+I NPD+ LD L+ I+ GPDFPTG +ILG  GI++A
Sbjct: 181 GIAVGMATNIPTHNPAEIIDATLALIANPDLTLDDLIRIVPGPDFPTGGIILGHAGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGSI+IR  + IE+   DR  IV+TEIPYQVNKA + E+IAELVR K+I  I+D+R
Sbjct: 241 FETGRGSILIRARAEIEELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+  +P    L  +L+A
Sbjct: 301 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDNGQPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FITFREDVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMAT 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W+A+D++ L+ LI D    +  DG +YL+E Q R ILELRL RLTGL R+ I+ EL+ +
Sbjct: 421 AWDAADVEPLLALIQDEGNVVT-DGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L I++SR R + ++ +EL +++ EL TPR T I +   D  DE  I    MVV
Sbjct: 480 AARINELLTIIASRPRRMEVMCEELAAIRAELATPRMTEIAQYAGDQTDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D V   F   TH  VLFFSS G  Y+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L    G+ IT ++P P+DE+ W NL++VFAT  GNVRRN
Sbjct: 600 EKVWRLPEASPTAKGRALVNLLPDLGGDSITAVLPLPQDETLWENLHLVFATATGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 660 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLATRAARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG---------DT 769
           R+S GVRGI LA+GD+V S+ ++ H +A  +ER  +++  +A+RR  +          + 
Sbjct: 720 RDSSGVRGIRLAEGDEVNSLCVLNHVEATVEERASFLRMANARRRAENAALQAGEEAEEV 779

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
               S       +  I  ER  E++  E+ +LTVS  GFG+R+S+YD+R+S R G+GI  
Sbjct: 780 AAEPSDDEALPADSVIDPERFAEMEQAEEILLTVSNAGFGRRSSAYDYRVSGRGGQGIAN 839

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              +       +VA  PV +   ++LV+D G LIRVPV++IR+ SR   GV +F     E
Sbjct: 840 MTFNGGKRGSEVVATLPVINGTDVMLVTDAGRLIRVPVDQIRVMSRQASGVTLFRLDTTE 899

Query: 890 RVVSV 894
           RV SV
Sbjct: 900 RVTSV 904



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 648 VVFATKHGNVRRNKLSDF-IQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKL 702
           ++  +  G  RR+   D+ +       IA           E+++        D++L T  
Sbjct: 810 LLTVSNAGFGRRSSAYDYRVSGRGGQGIANMTFNGGKRGSEVVATLPVINGTDVMLVTDA 869

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ +R P+  IRV + R + GV    L   ++V S+  V+    D  E        +   
Sbjct: 870 GRLIRVPVDQIRVMS-RQASGVTLFRLDTTERVTSVFPVMDDGDDDAEDGGPDAPAAEDE 928

Query: 763 RL 764
             
Sbjct: 929 NA 930


>gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 899

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/908 (43%), Positives = 562/908 (61%), Gaps = 32/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE +VVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKAEVEVADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                  + +   +  + E         + +
Sbjct: 719 GVRGIRLTKGEEVVSLIV------------------AERAGGVEEEIEADDVDDVVETTD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  +            +ILT +E GFGKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GAEAAVIEVADDGNVAYILTATENGFGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 903 VDEAESTE 910
             E    E
Sbjct: 879 EVEDVVDE 886


>gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69]
 gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88]
 gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a]
 gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206]
 gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073]
 gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89]
 gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1]
 gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           S88]
 gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           ED1a]
 gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82]
 gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA]
 gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972]
 gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034]
 gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1]
 gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1]
 gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101]
 gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972]
 gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146]
 gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C]
 gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3]
 gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1]
 gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3]
 gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327]
 gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1]
 gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252]
 gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263]
 gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2]
 gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  ++ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N]
 gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N]
          Length = 883

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/908 (42%), Positives = 547/908 (60%), Gaps = 78/908 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEVV+GC+  + NP+  +D L+EII  PDFPTG +I G  G++  Y TGRG ++
Sbjct: 182 IPPHNLGEVVEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIYGMVGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IVV  IPYQVNK  + E+IAELV EK+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLISYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM R+W++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARNWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                  + +  DG   LSE Q + IL +RL RLTGL +D I
Sbjct: 422 EMLARADGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR+ I     +++ 
Sbjct: 482 IGEYKDVMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +
Sbjct: 542 EDLITPMDMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L  GE+IT ++P  E     ++ YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKITVVLPVKEFS---DDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGADLTDGKHDVMLFSDSGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GR + GVRG+ L     VI++ +                             
Sbjct: 719 ENDVRPM-GRAARGVRGMMLEDSQSVIALLVAGD-------------------------- 751

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRTS  ++    R  KG+ A
Sbjct: 752 --------------------------ESQSVLTATENGYGKRTSIAEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    VN +D+I+L++  G L+R  V+EIR   RAT+GV + S     
Sbjct: 786 IQTSSRN--GRVVGAVLVNPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDGS 843

Query: 890 RVVSVERI 897
            +  V R+
Sbjct: 844 SLSGVRRV 851



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 14/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  LS +   R+ G     +   + D++    +      V+ F
Sbjct: 651 FSDDHYVFMATSRGTVKKTALSDFSNPRKAGIIAVDLD--EGDYLIGADLTDGKHDVMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +    + +  +    +    D     +  V+ AT
Sbjct: 709 SDSGKAVRFDENDVRPMGRAARGVRGM----MLEDSQSVIALLVAGD----ESQSVLTAT 760

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R  K  + +        ++        ++I+L T  G  VR  
Sbjct: 761 ENGYGKRTSIAEYTRHGRGTKGMIAIQTSSRNGRVVGAVLVNPSDEIMLITTGGVLVRTR 820

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  IS+  G  +  +  V  +DAD DE             +     
Sbjct: 821 VSEIREM-GRATQGVTLISVDDGSSLSGVRRVAESDADDDEAADAADGSDGADGVAESTE 879

Query: 770 EEIT 773
           E   
Sbjct: 880 EPTE 883


>gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ +FV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIASFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852


>gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS]
 gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 889

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/923 (43%), Positives = 565/923 (61%), Gaps = 78/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR LL++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS QEP+V+  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPTG +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMEIIPAPDFPTGGIIYGINGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+LKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F++ R EV
Sbjct: 302 RLVIDLKRGEVPEVVLNNLYKQTQLQDTFGINMVALINGQPKLCNLKDLIQVFISHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + IIR +P P  A+ ELM R+W++S ++
Sbjct: 362 VTRRTVFTLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKAELMTRAWDSSLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                      S+ +GSDG   LSE QT+ IL++RL RLTGL +D 
Sbjct: 422 EMLTRAHADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +  EI + LDIL+   R+  II QEL ++K E        RR+ I     D+ 
Sbjct: 482 IVAEYKEVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQTKLGARRSHIEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS  G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++    E  S   + Y
Sbjct: 602 ILCFSDRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRSFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L DF    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTPLDDFNNPRKGGIIAVALDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG++L +G  VI+M +    +                      
Sbjct: 722 FDENDVRPM-GRNARGVRGMNLEEGQGVIAMLVAEDGE---------------------- 758

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q +LT ++ GFGKRTS  ++    R  KG+
Sbjct: 759 ------------------------------QSVLTATQMGFGKRTSISEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D+G L+R  V+EIR   RAT+GV +    +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDRGVLVRTRVSEIREMGRATQGVTLIGLDE 846

Query: 888 DERVVSVERIRESEIV-DEAEST 909
             ++  ++RI E++   D+ E T
Sbjct: 847 GSQLSGLQRIVENDATLDDTEKT 869



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 99/245 (40%), Gaps = 14/245 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+ PL  +   R+GG     V + + D++    +      V+ F
Sbjct: 656 FPADQYVFMATSMGTVKKTPLDDFNNPRKGG--IIAVALDEGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +N+    +  +    M   ED        V+ AT
Sbjct: 714 SDGGKAVRFDENDVRPMGRNARGVRGMNL----EEGQGVIAMLVAED----GEQSVLTAT 765

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  +S++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 766 QMGFGKRTSISEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDRGVLVRTR 825

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  I L +G Q+  +  ++  DA  D+    +   +          
Sbjct: 826 VSEIREM-GRATQGVTLIGLDEGSQLSGLQRIVENDATLDDTEKTVDTDTGNDAGNDAAN 884

Query: 770 EEITS 774
            E  S
Sbjct: 885 PETNS 889


>gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024]
 gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026]
 gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359]
 gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354]
 gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185]
 gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299]
 gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai]
 gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196]
 gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113]
 gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076]
 gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401]
 gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486]
 gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501]
 gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869]
 gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508]
 gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206]
 gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045]
 gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042]
 gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115]
 gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli]
 gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli]
 gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588]
 gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           UMN026]
 gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           O157:H7 str. TW14359]
 gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042]
 gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615]
 gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412]
 gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185]
 gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354]
 gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302]
 gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1]
 gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101]
 gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89]
 gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687]
 gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905]
 gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G]
 gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125]
 gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044]
 gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718]
 gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280]
 gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012]
 gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905]
 gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82]
 gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638]
 gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1]
 gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli
           BL21(DE3)]
 gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606]
 gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)]
 gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1]
 gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489]
 gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007]
          Length = 875

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 91/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++             ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGEGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 898

 Score =  921 bits (2379), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/908 (43%), Positives = 562/908 (61%), Gaps = 32/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYV---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +   A    +E                   E         + +
Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGADEE------------------IEADDVDDVVETTD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  +            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 903 VDEAESTE 910
             E  + E
Sbjct: 879 EVEDVAGE 886



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E     N  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + ++ 
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883

Query: 752 ICYMKHMSAQRRLIS 766
                  S      +
Sbjct: 884 AGEAAVASDTPPADA 898


>gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/906 (43%), Positives = 558/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFL---ADKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849


>gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi]
          Length = 902

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 456/896 (50%), Positives = 633/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + D S  +   G   L+  Q +AILE+RL RLTGL +D +  EL S+   I E   ILS+
Sbjct: 424 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602

Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP    +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHTIEREQFL 781

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895


>gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 894

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 459/911 (50%), Positives = 622/911 (68%), Gaps = 24/911 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +D      I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETALADP---SDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NK Y K ARI G+V+GKYHPHG++AIYDALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K    LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A I+NP I +D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR+ IV+T IPYQV K  ++EKIAE  ++KRI  I+D+R
Sbjct: 238 YHTGRGSIMMRSRHKIEEGRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   +  I++A
Sbjct: 298 DESNREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   + L++        D T  LS+ Q RAIL+LRL RLT LGRD+I +EL  L
Sbjct: 418 DWPVAEIAPYLKLVEAIETEASGD-TYRLSDTQVRAILDLRLHRLTALGRDEIGSELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL  R +L  ++++E  +++ +  TPR + I      +EDED I RE+MVV
Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIEDEDLIEREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I T++P PEDE SW +L+V+FAT +G VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  +  +GKIAM+ D    D ++ V   T+E+D+LL T+ G+ +RF  + +R F  
Sbjct: 657 SMDAFANVPSNGKIAMRFDDDSDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRG++L   D+VIS++I+  + AD D+R  Y++    +        +        
Sbjct: 717 RTSTGVRGMTLKGDDEVISLSILHRSGADQDQREEYLRFAPWKPEKEGEMQD-------- 768

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                   ++    +K +EQFILTV   G+GK +S+Y++R + R G+GI   D    N  
Sbjct: 769 --------QDMFALMKEREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIGRN-- 818

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP    DQ++LV+D+  LIR+ ++ +R+  R++ GV +F+ + DE VVS  +I 
Sbjct: 819 GPVVASFPATQADQLMLVTDQAKLIRMGLDSLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 878

Query: 899 ESEIVDEAEST 909
           ES+  ++   T
Sbjct: 879 ESDEAEDTAET 889


>gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739]
 gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739]
          Length = 875

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+  ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605]
 gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15]
 gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605]
          Length = 875

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 68.3 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  ++ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 899

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/908 (43%), Positives = 565/908 (62%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                  + +   +  + E         + +
Sbjct: 719 GVRGIRLTKGEEVVSLIV------------------AERAGGVEEEIEGDEVDDVVEATD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G+ S            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GSESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S +
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 902 IVDEAEST 909
            VDE    
Sbjct: 879 DVDEGVDE 886



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E     N  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  D DE 
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDDVDEG 883

Query: 752 ICYMKHMSAQRRLISG 767
           +       ++      
Sbjct: 884 VDEASASVSETPPTDA 899


>gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301]
 gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T]
 gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227]
 gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. W3110]
 gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A]
 gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94]
 gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1]
 gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989]
 gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9]
 gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088]
 gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736]
 gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A
 gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A
 gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli]
 gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli]
 gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K12 substr. W3110]
 gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 301]
 gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a
           str. 2457T]
 gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227]
 gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536]
 gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A]
 gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           str. K-12 substr. DH10B]
 gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94]
 gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A]
 gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11]
 gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22]
 gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019]
 gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11]
 gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           55989]
 gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI1]
 gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           BW2952]
 gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368]
 gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009]
 gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128]
 gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088]
 gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1]
 gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1]
 gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1]
 gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7]
 gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1]
 gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1]
 gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W]
 gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70]
 gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W]
 gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431]
 gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112]
 gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B]
 gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14]
 gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68]
 gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180]
 gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357]
 gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11]
 gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520]
 gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482]
 gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120]
 gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863]
 gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1]
 gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167]
 gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v]
 gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736]
 gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143]
 gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74]
 gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9]
          Length = 875

 Score =  920 bits (2378), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
 gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN]
          Length = 885

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/926 (42%), Positives = 556/926 (60%), Gaps = 80/926 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHMLRNPETSIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLIVVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KARDR HVL GLA+A+AN+D+ + IIR +P P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAELMTRSWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +G DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+   R+  II +EL S+K E        RR+ I     D+ 
Sbjct: 482 IVAEYKEVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHKLGARRSIIEYSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P   D  S+  + +
Sbjct: 602 ILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRF 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V   T  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMGTSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPL-GRAARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ETQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + +  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIALDE 846

Query: 888 DERVVSVERIRESE---IVDEAESTE 910
             ++  ++RI E++      EA S E
Sbjct: 847 GSKLSGLQRIVENDAHVGDVEAGSDE 872



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/240 (19%), Positives = 93/240 (38%), Gaps = 14/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+GG     +   D D++    +      V+ F
Sbjct: 656 FPADRFVFMGTSMGTVKKTALDEFSNPRKGGIIAVNLD--DGDYLIGAALTDGKHDVMLF 713

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +      ARG   +    + +  +    M   ED        V+ AT
Sbjct: 714 SDGGKAVRFDENDVRPLGRAARGVRGM----MLEDGQSVIAMLVAED----ETQSVLTAT 765

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 766 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDKGVLVRTR 825

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  I+L +G ++  +  ++  DA   +        +          
Sbjct: 826 VSEIREL-GRATQGVTLIALDEGSKLSGLQRIVENDAHVGDVEAGSDESAPDNAQPDAPE 884


>gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306]
          Length = 899

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/908 (43%), Positives = 564/908 (62%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL++V++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINVREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +                  + +   +  + E         + +
Sbjct: 719 GVRGIRLTKGEEVVSLIV------------------AERAGGVEEEIEGDEVDDVVEATD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  S            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GGESAVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S +
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 902 IVDEAEST 909
            VDE    
Sbjct: 879 EVDEGVDE 886



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 4/136 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E     N  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + DE 
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEG 883

Query: 752 ICYMKHMSAQRRLISG 767
           +       ++      
Sbjct: 884 VDEASASVSETPPTDA 899


>gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
 gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401]
          Length = 875

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E       + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTE---CEEGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 94/252 (37%), Gaps = 17/252 (6%)

Query: 531 DCIVREDMVVTV--SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                E+ V     +  G VK+  L+ +   R  GK    +V  DE    DL   S    
Sbjct: 636 PVTECEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDE 693

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+ FS+ G V + K   +            +  + L +G+++ +++          +  +
Sbjct: 694 VMLFSAEGKVVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAI 744

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  ++++   +R+ K  + +   +     +        + I++ T  G  
Sbjct: 745 LTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTL 804

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  +S I    GRN+ GV  I  A+ + V+ +  V     + D              + 
Sbjct: 805 VRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIA 863

Query: 766 SGDTEEITSLKN 777
                +    + 
Sbjct: 864 PEVDVDDEPEEE 875


>gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
 gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S]
          Length = 910

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/910 (50%), Positives = 622/910 (68%), Gaps = 23/910 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +D      I+ +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF  
Sbjct: 1   MTDETALADP---SDISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NK Y K ARI G+V+GKYHPHG++AIY ALARM QDWS+R+ LI+GQGNFGS+
Sbjct: 58  HESGFTHNKPYRKSARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K  + LLDDL KDTVDF+PNYD S  EP VL AR+PN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+  C+A IDN  I +D L++I+ GPDFPT  +ILG++G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLILGQSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR  IV+T IPYQV K  ++EKIAE  ++KRI  I+D+R
Sbjct: 238 YHTGRGSIMMRARHEIEEGRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R+G R+V++LKR A+ +V+LNQL+R T  QS F  NM+A+ G +PE   +  I++A
Sbjct: 298 DESSREGVRIVMDLKRDATPEVVLNQLWRNTPAQSSFPANMLAIRGGRPELLNIRDIIEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FREEV+ RRTKY LNKARDRAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVRFREEVITRRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   + L++     +G D +  LS+ Q RAIL+LRL RLT LGRD+I NEL  L
Sbjct: 418 DWPVAEIAPYLKLVEAIETEVGGD-SYRLSDTQVRAILDLRLHRLTALGRDEIGNELAEL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L IL  R +L  ++++E  +++ +  TPR + I      ++DED I RE+MVV
Sbjct: 477 AAAIAEYLAILGDRVKLYAVMREEFEAIERDFATPRLSEITAAADGIDDEDLIEREEMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED +T+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTVQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L+ GE I T++P PEDE SW +L+V+FAT +G VRRN
Sbjct: 597 LKVWRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  I  +GKIAM+ D    D ++ V   T+E+D+LL T+ G+ +RF  + +R F  
Sbjct: 657 SMDAFANIPSNGKIAMRFDDESDDRLIGVALLTEEDDVLLATRQGKAIRFQATDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRG++L K D+VIS++I+  + A+ +ER  Y++    +                +
Sbjct: 717 RTSTGVRGMTLKKDDEVISLSILHRSGANQEERDDYLRFAPWK---------------AE 761

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 +S ER  EL  KEQFILTV   G+GK +S+YD+R + R G+GI   D    N  
Sbjct: 762 KEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGITNIDNIGRN-- 819

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP    D ++LV+D+  LIR+ +  +R+  R++ GV +F+ + DE VVS  +I 
Sbjct: 820 GPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVIGRSSAGVRLFNVSDDEHVVSAAKIE 879

Query: 899 ESEIVDEAES 908
           ES+   E  +
Sbjct: 880 ESDEETEVST 889



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 93/281 (33%), Gaps = 39/281 (13%)

Query: 531 DCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                ED    +     +  G V+R  +  +      GK         +D +  + +++ 
Sbjct: 631 PLPEDEDSWKDLHVMFATANGTVRRNSMDAFANIPSNGKIAMRFDDESDDRLIGVALLTE 690

Query: 586 HTSVLFFSSLGFVYKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPE 638
              VL  +  G   + +   +         G      K    ++SL+   R        +
Sbjct: 691 EDDVLLATRQGKAIRFQATDVREFQSRTSTGVRGMTLKKDDEVISLSILHRSGANQEERD 750

Query: 639 DESSW-----------------------NNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           D   +                          +++    +G  + +   D+ +  R G+  
Sbjct: 751 DYLRFAPWKAEKEGSPQMSAERFAELAAKEQFILTVCANGYGKLSSAYDYRRTGRGGQGI 810

Query: 676 MKLDS---RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             +D+      +++       + ++L T   + +R  + ++RV  GR+S GVR  +++  
Sbjct: 811 TNIDNIGRNGPVVASFPARHGDHLMLVTDQAKLIRMGLESLRVI-GRSSAGVRLFNVSDD 869

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           + V+S A +  +D + +        +S +    +       
Sbjct: 870 EHVVSAAKIEESDEETEVSTPAGLEVSPEASPEADPDLTEE 910


>gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8]
 gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8]
          Length = 889

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/911 (42%), Positives = 546/911 (59%), Gaps = 78/911 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP   +D LME+I  PDFPTG +I G +G++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIYGMSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                  + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 EMLSRADGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II  EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L +GE+IT ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFS---EDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GRN+ GVRG+ L     VI++ +                             
Sbjct: 719 ENDVRPM-GRNARGVRGMMLEDTQTVIALLV----------------------------- 748

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V+EIR   RAT+GV + +     
Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLINVDDGS 843

Query: 890 RVVSVERIRES 900
            +  V R+ ES
Sbjct: 844 SLSGVRRVVES 854



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 70/408 (17%), Positives = 139/408 (34%), Gaps = 31/408 (7%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    SDI+     +D       +D  + L
Sbjct: 495 LLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDLITPTDMVVTL 554

Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           S      I    L+      R    +        +  + L I ++   LL    +  +  
Sbjct: 555 S--HGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRVYW 612

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--------------SHLGYVKRVPLS 554
               + P+ TR   G   +        E + V +              +  G VK+ PLS
Sbjct: 613 LKVWEVPQGTRNSRGKPIVNMFPLTEGEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLS 672

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +   R+ G     +   D D++    +      V+ FS  G   +     +      AR
Sbjct: 673 DFSNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 730

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   +  + L   + +  ++   +         V+ AT++G  +R  ++++ +  R  K 
Sbjct: 731 G---VRGMMLEDTQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKG 782

Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            + +       +++        ++I+L T  G  VR  +S IR   GR + GV  I++  
Sbjct: 783 MIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVRTRVSEIREM-GRATQGVTLINVDD 841

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G  +  +  V+ +DAD D  +      +             ++   + 
Sbjct: 842 GSSLSGVRRVVESDADDDGDLGEDGQEADGGDDNGAADSTDSTEPTEQ 889


>gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39]
 gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli
           IAI39]
          Length = 875

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPGATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 111/323 (34%), Gaps = 29/323 (8%)

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
             ++       +  + L + ++   +L    +  +        P  TR   G   +    
Sbjct: 565 KGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPGATRGARGRPIVNLLP 624

Query: 532 CIVREDMVVTV--------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
               E +   +              +  G VK+  L+ +   R  GK    +V  DE   
Sbjct: 625 LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIG 684

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            DL   S    V+ FS+ G V + K   +            +  + L +G+++ +++   
Sbjct: 685 VDL--TSGEDEVMLFSAEGKVVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI--- 736

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                  +  ++ AT++G  +R  ++++   +R+ K  + +   +     +        +
Sbjct: 737 ---VPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCD 793

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I++ T  G  VR  +S I    GRN+ GV  I  A+ + V+ +  V     + D     
Sbjct: 794 QIMMITDAGTLVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 852

Query: 755 MKHMSAQRRLISGDTEEITSLKN 777
                    +      +    + 
Sbjct: 853 GSAAEGDDEIAPEVDVDDEPEEE 875


>gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010]
          Length = 875

 Score =  920 bits (2377), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/906 (43%), Positives = 557/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+  YL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGVIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849


>gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 898

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/908 (43%), Positives = 562/908 (61%), Gaps = 32/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYV---DNRYVFFATRNGTVKKTSL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALIGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +   A    +E                   E         + +
Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGADEE------------------IEADDVDDVVETTD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  +            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GAETAVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 903 VDEAESTE 910
             E  + E
Sbjct: 879 EVEDVAGE 886



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E     N  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + ++ 
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883

Query: 752 ICYMKHMSAQRRLIS 766
                  S      +
Sbjct: 884 AGEAAVASDTPPADA 898


>gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21]
 gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21]
          Length = 836

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/895 (45%), Positives = 559/895 (62%), Gaps = 83/895 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R++
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLT 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VAVIDNP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    I
Sbjct: 188 EVIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247

Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G R+VIELK
Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT +
Sbjct: 308 KDENPTILLNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RLTGL RD I  EL  +   I    +IL+S +
Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEA 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L   E+ITTI+P  E     ++ +++ AT++G V++  + ++      G IA
Sbjct: 582 KAIVNLLNLAANEKITTILPVKEFV---DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V     + D+LL +  G+ +RF    +R   GR S GVRG++L   D V
Sbjct: 639 VNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRTV-GRVSRGVRGMTLEDEDVV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I+     D                                                
Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L
Sbjct: 711 ---TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLML 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++D+G ++RVPV    I  R T+GV +    ++ERVV+V R+ E E  DE E  E
Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGE 820



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 100/239 (41%), Gaps = 12/239 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  ++  +  G VK+  +  Y   R GG     +   + D +  + +      VL  S+
Sbjct: 607 DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLD--EGDKLITVALTDGKQDVLLASA 664

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + K   +      +RG   +  ++L   + +  +    E+ +   +  +   T++
Sbjct: 665 NGKAIRFKEEDVRTVGRVSRG---VRGMTLEDEDVVIGMEILNENFT---DSTIFTVTEN 718

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R ++S++   +R GK  + + + +     + ++    +ND++L T  G+ +R P++
Sbjct: 719 GYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLMLITDQGKILRVPVA 778

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                 GRN+ GVR +   + ++V+++A +   +   +     +  +           E
Sbjct: 779 GF-SIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDEPEDGELDEIVELESGEEQGEE 836


>gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
 gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1]
          Length = 875

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T +DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 91/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I   + + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTTEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
 gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2]
 gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M]
          Length = 867

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/919 (42%), Positives = 566/919 (61%), Gaps = 77/919 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EVVD C  +++NPD  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 VPPHNLNEVVDACQHLLNNPDATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQISDLLDILARPERITTMIGEELTTVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWIKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L +G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDEGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEDQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERIRESEIVDEAESTE 910
             +++I E+E  D  E+ E
Sbjct: 844 SGLQQIAEAEDGD-GEADE 861


>gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407]
          Length = 875

 Score =  919 bits (2376), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQ+NKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
 gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1]
          Length = 875

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
 gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12]
          Length = 868

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/902 (41%), Positives = 545/902 (60%), Gaps = 69/902 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K    +S+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN+ Y K
Sbjct: 6   KETLPISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K AH +L D+ K+TVDF PNYDGS QEP++L AR PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLSKIAHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+ ++ NP   ++ LME +  PDFPT  +I G +G+++AY TGRG +V+R  
Sbjct: 186 NLGEVLDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGTSGVRDAYRTGRGRVVMRAR 245

Query: 254 SHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E     + + I+V E+PYQVNK  +LE+IAELV+EK+I  I+ ++DESD+ G RVVI
Sbjct: 246 CHFEDLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG   +V+LN LY+ T LQ  F VNMVAL   +P    L  ++ AF++ R E++ RR
Sbjct: 306 ELKRGEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQPRLLNLQQMIAAFLSHRREIITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R HVL GLA+A+AN+D ++ +I+ +P P  A+  L+ ++W   + + ++ 
Sbjct: 366 TVFDLRKARERGHVLEGLAVALANVDRMIELIKAAPTPPVAKERLLAQAWEPGEARAMLS 425

Query: 433 LIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            ++        D             YLSE Q + IL++RL RLTGL +D I +E   +  
Sbjct: 426 RVEGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVME 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + LDIL+   R+  II  E+ +++ E    RR+ I     D++ ED I  +D+VVT+
Sbjct: 486 QIADLLDILAKPERMTEIITTEMSALRAEFGDARRSHIEVNAYDIDVEDLITPQDLVVTI 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PL+ YRAQRRGG+G+     +++D+V  LF+ +TH  +L FS+ G VY  K
Sbjct: 546 SHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRGRVYWMK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+  P+G   +RGK L+N+  L  GE+ITT++P    +      YV  AT  G V++  L
Sbjct: 606 VYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFD---EQHYVFMATARGTVKKTPL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + F     +G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + 
Sbjct: 663 TAFANRRTAGIIAVGLDDDDYLIGAAITDGQHDVMLFSDAGKAVRFDEADVRPM-GREAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L     VI++ +                                          
Sbjct: 722 GVRGMQLEADQSVIALLVAED--------------------------------------- 742

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                        + Q +LT +E GFGKRTS  ++    R  KG+ A   S+ N  G +V
Sbjct: 743 -------------ETQSVLTATENGFGKRTSITEYTRHGRGTKGMIAIQTSERN--GKVV 787

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A   V  +D+I+L++D G L+R  V EIR   RAT+GV + +      ++ V+ + E++ 
Sbjct: 788 AACLVRTSDEIMLITDTGVLVRTRVEEIREMGRATQGVTLIALDAKAHLIQVQPVVEADD 847

Query: 903 VD 904
            +
Sbjct: 848 DE 849



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 93/237 (39%), Gaps = 14/237 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL+ +  +R  G     V + D+D++    I      V+ F
Sbjct: 642 FDEQHYVFMATARGTVKKTPLTAFANRRTAG--IIAVGLDDDDYLIGAAITDGQHDVMLF 699

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   + +    + ++    +   ED        V+ AT
Sbjct: 700 SDAGKAVRFDEADVRPMGREARGVRGMQL----EADQSVIALLVAED----ETQSVLTAT 751

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++       ++I+L T  G  VR  
Sbjct: 752 ENGFGKRTSITEYTRHGRGTKGMIAIQTSERNGKVVAACLVRTSDEIMLITDTGVLVRTR 811

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  IR   GR + GV  I+L     +I +  V+ AD D                   
Sbjct: 812 VEEIREM-GRATQGVTLIALDAKAHLIQVQPVVEADDDELPPAELPPAEDGGADTAE 867


>gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY]
 gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY]
          Length = 877

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/912 (42%), Positives = 549/912 (60%), Gaps = 77/912 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH +L D+ K+TVDF PNYDGS +EP+VL ++ PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLSKIAHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++  PD  +D LMEII  PDFPT  +I G  G+K  Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLRQPDATVDELMEIIPAPDFPTAGIIYGINGVKEGYRTGRGKVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ G 
Sbjct: 242 MRAKCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  ++K F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQPKLCNLKDLIKVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE +RIIR SP P  A+ ELM RSW++  ++
Sbjct: 362 VTRRTVFELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +   G   LS+ Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +   I++ LDIL+  +R+  II +EL +++ E        RR+ I     D+ 
Sbjct: 482 IVAEYKDVMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSKVGARRSTIEHSAQDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P      +   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPSGSRNSRGRPIVNMFPLAEGEKINVVLPLTGGMRTFPADHY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTALDEFSNPRKGGIIAVNLDDGDYLIGAALTDGQHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPL-GRQARGVRGMMLEDGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +E G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ENQSVLTATENGYGKRTSIVEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++D G L+R  V+EIR   RAT+GV + S  +
Sbjct: 789 IAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVSEIRELGRATQGVTLISLDE 846

Query: 888 DERVVSVERIRE 899
             ++  ++RI E
Sbjct: 847 GAKLSGLQRIVE 858


>gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227]
          Length = 878

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 406/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            +S +
Sbjct: 848 LDSID 852



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/246 (18%), Positives = 92/246 (37%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDSIDGSAAEGDDEIAPEVESDDDV 872

Query: 775 LKNDSS 780
             +   
Sbjct: 873 ADDADE 878


>gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54]
          Length = 889

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/909 (42%), Positives = 544/909 (59%), Gaps = 78/909 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVDGC+  + NP   +D LMEII  PDFPTG VI G +G++  Y TGRG ++
Sbjct: 182 IPPHNLQEVVDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIYGMSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E       + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G 
Sbjct: 242 MRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +N+VAL   +P    L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQMIDYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ + II+ +P P  AR+ELM +SW++S ++
Sbjct: 362 VTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMAKSWDSSLVR 421

Query: 429 DLIDLIDDS---------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +++   D                  + +  DG   LS+ Q + IL +RL RLTGL +D I
Sbjct: 422 EMLSRADGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKI 481

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMED 529
             E   +   I + LDIL+   R+  II +EL ++K E        RR+ I     +++ 
Sbjct: 482 VGEYKDIMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDT 541

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   DMVVT+SH GY+K  PLS YR+Q+RGG+G+    M++ D++  LFI +TH  +
Sbjct: 542 EDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFL 601

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L FS+ G VY  KVW +P G+  +RGK ++N+  L +GE+IT ++P  E      + YV 
Sbjct: 602 LCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFS---EDHYVF 658

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  LSDF    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF 
Sbjct: 659 MATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFD 718

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + +R   GRN+ GVRG+ L     VI++ +                             
Sbjct: 719 ENDVRPM-GRNARGVRGMMLEDTQNVIALLV----------------------------- 748

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     + Q +LT +E G+GKRT   ++    R  KG+ A
Sbjct: 749 -----------------------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIA 785

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V  +D+I+L++  G L+R  V EIR   RAT+GV + +     
Sbjct: 786 IQTSSRN--GKVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLINVDDGS 843

Query: 890 RVVSVERIR 898
            +  V R+ 
Sbjct: 844 SLSGVRRVV 852



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + L      + D+++      M+ +                +  + + I  +        
Sbjct: 468 MRLQRLTGLEQDKIVGEYKDIMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDT 527

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             S +E N +E   ++L      ++T+S  G+ K     ++R   R G+G +AT + + +
Sbjct: 528 RRSEIELNATELDTEDLITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 587

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893
            I  L   F  N +D ++  S++G +  + V E+   +R ++G  I +    A+ E++  
Sbjct: 588 WIDQL---FIANTHDFLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLAEGEKITV 644

Query: 894 VERIRESEIV 903
           V  ++E    
Sbjct: 645 VLPVKEFSED 654



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 69/408 (16%), Positives = 138/408 (33%), Gaps = 31/408 (7%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    S+I+     +D       +D  + L
Sbjct: 495 LLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDLITPTDMVVTL 554

Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           S      I    L+      R    +        +  + L I ++   LL    +  +  
Sbjct: 555 S--HGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLCFSNRGRVYW 612

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--------------SHLGYVKRVPLS 554
               + P+ TR   G   +        E + V +              +  G VK+ PLS
Sbjct: 613 LKVWEVPQGTRNSRGKPIVNMFPLAEGEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLS 672

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +   R+ G     +   D D++    +      V+ FS  G   +     +      AR
Sbjct: 673 DFSNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNAR 730

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   +  + L   + +  ++   +         V+ AT++G  +R  ++++ +  R  K 
Sbjct: 731 G---VRGMMLEDTQNVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKG 782

Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            + +       +++        ++I+L T  G  VR  ++ IR   GR + GV  I++  
Sbjct: 783 MIAIQTSSRNGKVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLINVDD 841

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G  +  +  V+ +DAD D           Q           ++   + 
Sbjct: 842 GSSLSGVRRVVESDADDDSEDLDDGQEEGQEEGNGDAGATDSTEPTEQ 889


>gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
 gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118]
          Length = 900

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/908 (43%), Positives = 562/908 (61%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +++ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVVRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +   A    +E          +            +   + +  
Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVA-- 776

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 777 ----------------YILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S +
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 902 IVDEAEST 909
            VDE    
Sbjct: 879 EVDEVVDE 886



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E     N  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + DE 
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEV 883

Query: 752 ICYMKHMSAQRRLISG 767
           +       ++    + 
Sbjct: 884 VDEAGASVSEAPPTTD 899


>gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202]
 gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202]
          Length = 885

 Score =  919 bits (2375), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/896 (46%), Positives = 571/896 (63%), Gaps = 36/896 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I++  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A A+V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  +LSE Q RAILELRL RLTGL  + I +E  +L +
Sbjct: 423 LEAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILTSPERLMEVIREELERVKAEFGDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  + +R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA                           +S +   +  +T E    +  SSV
Sbjct: 722 TGVRGIKLA------------------------TTEISDEVEDVEIETVENEDAEETSSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                +     +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA DE VVS+ERI
Sbjct: 816 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871


>gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
 gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp.
           SM9913]
          Length = 899

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/936 (43%), Positives = 573/936 (61%), Gaps = 98/936 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+I NP++ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLALIQNPELTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L  R W   ++K ++D
Sbjct: 366 TVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLD 425

Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              + +              DG  Y+SE Q +AIL+LRL +LTGL  + I  E  SL   
Sbjct: 426 KAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLEL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL++  RL+ +I+ EL+ +K++    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLFILANPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLINEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   L+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT I+P  + E   ++ Y+  AT  G V++  L+
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVRDYE---DDKYIFMATAFGTVKKTPLT 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA----------- 712
            + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +            
Sbjct: 663 AYSRQRASGIIAVNLNEGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETAVVDENGNP 722

Query: 713 --------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
                         +R   GR + GVRGI +    +V+S+ +                  
Sbjct: 723 VLDEEGKPEIRFKGVRPM-GRTATGVRGIKMPDDQRVVSLIV------------------ 763

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                 +  ILTV+E G+GKRT   D+ 
Sbjct: 764 -----------------------------------PKNDGAILTVTENGYGKRTQLEDYP 788

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T+
Sbjct: 789 SKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQ 846

Query: 879 GVVIFSTAKDERVVSVERIRESEIVD----EAESTE 910
           GV++  T  +E+VV ++RI E E+ +    + E  E
Sbjct: 847 GVILIRTIDEEQVVGLQRIEEIEVTESDLVDIEDVE 882



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 91/262 (34%), Gaps = 22/262 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PL+ Y  QR  G     +   D     D+        ++ F
Sbjct: 641 YEDDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDI--TDGSNEIMLF 698

Query: 593 SSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPF 636
           +  G V + K                   G P+ R K    +    +  +G ++      
Sbjct: 699 TDAGKVVRFKEAEETAVVDENGNPVLDEEGKPEIRFKGVRPMGRTATGVRGIKMPDDQRV 758

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693
                  N+  ++  T++G  +R +L D+   +R+ +  + +   +     +        
Sbjct: 759 VSLIVPKNDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDDN 818

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I++ +  G  VR  ++ +    GRN+ GV  I     +QV+ +  +   +    + + 
Sbjct: 819 DEIMIISNRGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLVD 877

Query: 754 YMKHMSAQRRLISGDTEEITSL 775
                +    +     +   S 
Sbjct: 878 IEDVETVDTVIDEVADDNPPSE 899


>gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
 gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573]
 gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451]
          Length = 893

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ L                               
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                  +  +     +   E  +LTV+E G+GKRTS  ++   
Sbjct: 751 ----------------------ADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 847 TLIRTSEGESVVGLQRIDE 865



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/442 (15%), Positives = 141/442 (31%), Gaps = 52/442 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRSNG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEE 771
                    +          EE
Sbjct: 872 PEGEEALVENDAPVAQDDGEEE 893


>gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223]
 gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603]
 gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223]
          Length = 894

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRSNGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ L                               
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                  +  +     +   E  +LTV+E G+GKRTS  ++   
Sbjct: 751 ----------------------ADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 847 TLIRTSEGESVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRSNG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 900

 Score =  919 bits (2374), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/908 (43%), Positives = 562/908 (61%), Gaps = 33/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD   QEP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++++F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMEAVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLG 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIEGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +   A    +E          +            +   + +  
Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAGGVEEEIEGEEVDDVVEATDGGESAVIEVADDGNVA-- 776

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 777 ----------------YILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-E 901
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S +
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 902 IVDEAEST 909
            VDE    
Sbjct: 879 EVDEVVDE 886



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 4/136 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E     N  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + DE 
Sbjct: 825 ATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVDEV 883

Query: 752 ICYMKHMSAQRRLISG 767
           +       ++    + 
Sbjct: 884 VDEAGASVSEAPPTTD 899


>gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
 gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6]
          Length = 884

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/900 (44%), Positives = 557/900 (61%), Gaps = 69/900 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG+ L+N+L L+  E ITT++P  E        ++  AT  G V++ 
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYT---EGHFIFMATAKGTVKKT 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR 
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G ++ISM I                                        
Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +   ILT SE+G+GKRT+  +F    R G+G+ A   +  N  G 
Sbjct: 739 -------------PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GR 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   AKDE++V +ER++E 
Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLAKDEKLVGLERVQEP 843



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 139/426 (32%), Gaps = 30/426 (7%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L   +  A     L      +  +   +R           +     +    + L   +D 
Sbjct: 470 LEHEKLLAEYQEILNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDL 529

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
           +   +  +    ++           LA      R    ++       +    L + +S +
Sbjct: 530 TLGDMIPEEERVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHT 589

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            LL    +  +      + P  +R   G   +        E +   +             
Sbjct: 590 TLLLFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFM 649

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+ PL  +  QR  G     + + + D +    I      V+ FS  G V + 
Sbjct: 650 ATAKGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVMLFSDGGKVTRF 707

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +      ARG   +  + L +G+++ +++             ++ A++ G  +R  
Sbjct: 708 KESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGYGKRTA 758

Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +S+F +  R G+  + + S D     +         +I+L +  G  VR  ++ +    G
Sbjct: 759 ISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSL-G 817

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GV  I LAK ++++ +  V        E +   +           + +E T     
Sbjct: 818 RNTQGVTLIKLAKDEKLVGLERVQEPSEVEGEELEGEEFDGEVVAAGDDNVDEPTLDAAA 877

Query: 779 SSVEGN 784
              E  
Sbjct: 878 DEEEPQ 883


>gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
 gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118]
          Length = 880

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/922 (42%), Positives = 556/922 (60%), Gaps = 77/922 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    VS+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   TQFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS +EP+VL  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLSKIAHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LMEII  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLRNPEASIDELMEIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + Q I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRAKVHFEDIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  ++K F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPKLCNLKDLIKVFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+DE + IIR +P P  A+ ELM + W++  ++
Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDEFIAIIRNAPTPPVAKVELMAKPWDSKLVR 421

Query: 429 DLIDLIDDSS----------------YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       Y +GSDG   LS+ Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +  EI++ LDIL+   R+  II +EL ++K E        RR+ +     D+ 
Sbjct: 482 IVAEYKEVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQTKLGARRSLVEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D+V  LFI +TH  
Sbjct: 542 TEDLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++    E  S   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L +F    + G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMATSMGTVKKTPLDEFSNPRKGGIIAVGLDEGDYLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG+ L  G  VI+M +                           
Sbjct: 722 FDENDVRPM-GRNARGVRGMMLEDGQGVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       + Q +LT +  G+GKRTS  ++    R  KG+
Sbjct: 757 ----------------------------ELQSVLTATVNGYGKRTSITEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A   S+ N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV +    +
Sbjct: 789 IAITQSERN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIGLDE 846

Query: 888 DERVVSVERIRESEIVDEAEST 909
             ++  ++RI E++    A+ T
Sbjct: 847 GSKLSGLQRIVENDANPVADET 868


>gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586]
 gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586]
          Length = 894

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/919 (43%), Positives = 560/919 (60%), Gaps = 92/919 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ VE    E+DI+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIAVNLRDDDALIGVEITDGESDIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ L                               
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                  +  +     +   E  +LTV+E G+GKRTS  ++   
Sbjct: 751 ----------------------ADGDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 847 TLIRTSEGESVVGLQRIDE 865



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     V +RD+D +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDALIGVEITDGESD 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKAEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
 gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda]
          Length = 905

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 468/906 (51%), Positives = 646/906 (71%), Gaps = 8/906 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E +E  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G 
Sbjct: 1   MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK+Y K AR+ G+V+GKYHPHG  A+YD+L RMAQD+SLRL L++GQGNFGS+DGD  
Sbjct: 61  HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG  QEP VL A +PN+LVNG GGIAVG
Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD C A IDN DI +  LME+++GPDFPTG  I+G  GIK+AY TGR
Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG + IE  S     I++TEIP+ VNKA+++EKIAELV +K+I  I+ +RDES++
Sbjct: 241 GKIIVRGKTDIESDSLKH-AIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+   P+  TL  I+ AF  FR
Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+  LM R WN S
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNIS 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ DL+ L+DD    +  DG  +L+E QT++ILELRL RLT   R  + +ELN+L  EIK
Sbjct: 420 DVYDLVKLVDD-RAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL SR +LL  +K EL  +K++  T R T I     + + ED I  E++VVTV+  
Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTTRLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPLS YRAQ+RGGKGR G  +++ED +T LFI +THTS+LFFS++G VY  KV++
Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+     Y++FATKHGN+RRN LSD
Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +GKIA++LD  D ++SV++C + N +LL T+ G+ +RFP+  +RVF  R S GV
Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I LA  D VISM I+   +   + R  Y+      R LI+   +  +   N    + N
Sbjct: 719 KAIKLAANDAVISMTILKGINCSLEVRENYLNLPVNNRLLIA---KNKSLQPNIDLSKYN 775

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E+    +   E+FILTVSE G+GK +S+Y++R++ R GKGI   +VS   + G +V+V
Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGIANMNVSP--KTGKVVSV 833

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
                +++++L++  G LIR  +N +RI  R+T GV++F T+KDE+VVS++ I++++  D
Sbjct: 834 LSACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893

Query: 905 EAESTE 910
           +    E
Sbjct: 894 DCSDDE 899


>gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem]
 gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem]
          Length = 836

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/895 (45%), Positives = 560/895 (62%), Gaps = 83/895 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R++
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL D+ K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VA+IDNP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    I
Sbjct: 188 EVIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247

Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G RVVIELK
Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  +ILN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT +
Sbjct: 308 KDENPTIILNHLYKQTQMQSSFGIIMLAIVNSRPRVLTLRETIDFFIEHRKEIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RLTGL R+ I  EL  +   I    +IL+S +
Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLEREKIMEELREILKYIARLKEILASEA 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILKIIVGELVELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L   E+ITTI+P  E     ++ +++ AT++G V++  + ++      G IA
Sbjct: 582 KAIVNLLNLAANEKITTILPVKEFV---DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V     + D+LL +  G+ +RF    +R   GR S GVRG++L   D V
Sbjct: 639 VNLDEGDKLITVALTDGKQDVLLASANGKAIRFKEEDVRTV-GRVSRGVRGMTLEGEDVV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I+     D                                                
Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L
Sbjct: 711 ---TIFTVTENGYGKRTEISEYRSQSRGGKGVITIKTTERN--GNVVDIKQVNDDNDLML 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++D+G ++RVPV    I  R T+GV +    ++ERVV+V R+ E E  DE+E  E
Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGE 820



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 100/239 (41%), Gaps = 12/239 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  ++  +  G VK+  +  Y   R GG     +   + D +  + +      VL  S+
Sbjct: 607 DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLD--EGDKLITVALTDGKQDVLLASA 664

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + K   +      +RG   +  ++L   + +  +    E+ +   +  +   T++
Sbjct: 665 NGKAIRFKEEDVRTVGRVSRG---VRGMTLEGEDVVIGMEILNENFT---DSTIFTVTEN 718

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R ++S++   +R GK  + + + +     + ++    +ND++L T  G+ +R P++
Sbjct: 719 GYGKRTEISEYRSQSRGGKGVITIKTTERNGNVVDIKQVNDDNDLMLITDQGKILRVPVA 778

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                 GRN+ GVR +   + ++V+++A +   +   +     +  M           E
Sbjct: 779 GF-SIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDESEDGELDEMVELESGEEQGEE 836


>gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305]
 gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305]
          Length = 885

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/896 (46%), Positives = 571/896 (63%), Gaps = 36/896 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I++  I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQIVVTE+PYQVNKA ++EKIAELV++K+I  I+ + D SD++G  +
Sbjct: 243 RAKASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A A+V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  +LSE Q RAILELRL RLTGL  + I +E  +L +
Sbjct: 423 LEAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILTSPERLMEVIREELERVKSEFGDERRTEITAASGDINIEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  + +R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETQVRGM-GRVA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA                           +S +   +  +T E    +  SSV
Sbjct: 722 TGVRGIKLA------------------------TTEISDEVEDVEIETVENEDTEETSSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                +     +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALSEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA DE VVS+ERI
Sbjct: 816 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTADDEHVVSLERI 871


>gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197]
 gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
 gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197]
 gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617]
          Length = 875

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+  ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
 gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75]
          Length = 875

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  ++ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
 gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21]
          Length = 894

 Score =  918 bits (2373), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ L                               
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                  +  +     +   E  +LTV+E G+GKRTS  ++   
Sbjct: 751 ----------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 847 TLIRTSEGESVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046]
 gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046]
          Length = 875

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c]
 gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c]
          Length = 897

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/926 (43%), Positives = 571/926 (61%), Gaps = 95/926 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H         + I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDH--------AQEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV
Sbjct: 53  NELKNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF PNYDG+   P VL  + PN+L+NG  
Sbjct: 113 DGDSAAAMRYTEIRMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ A
Sbjct: 173 GIAVGMATNIPPHNLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + IE+    +E IVV EIPYQVNKA ++EKIAELV+EK+I  I+ LR
Sbjct: 233 YRTGRGKIYMRARAEIEREDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALR 292

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+V+E+KR  S +V+LN LY  T +Q++F +NMVAL+  +P+ F L+ IL+A
Sbjct: 293 DESDKDGMRIVVEVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLEILQA 352

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P  A+  L  +
Sbjct: 353 FVLHRREVVTRRTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQ 412

Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            W   D+ D+++   + +             DG  YL+E Q +AIL+LRL +LTGL  + 
Sbjct: 413 GWALGDVSDMLERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEK 472

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++DE    RRT I     D++ ED 
Sbjct: 473 ILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDL 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE++VVT+S  GYVK   L+ Y +QRRGGKG+S   M++EDF+  L + +TH  +L F
Sbjct: 533 IEREEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCF 592

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G +Y  KV++LP+ S  ARG+ ++NIL L   ERIT I+P  E E      YV+ AT
Sbjct: 593 STRGRLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFE---EGKYVLMAT 649

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711
            +G V++  L  + +   +G IA+ L+  DE++ V+     +DI+L +  G+ VRF    
Sbjct: 650 ANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKA 709

Query: 712 -------------------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
                              A+R   GR + GVRGI L  G +V+S+ +            
Sbjct: 710 RDSETGAVKIDPETGEEILALRPM-GRTATGVRGIRLQDGQKVVSLIV------------ 756

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       +  ILT +E GFGKRT
Sbjct: 757 -----------------------------------------PQGDGAILTATENGFGKRT 775

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              D+   +R+ +G+ +  VS+ N  G +V    VND+D+I+L+SD+GTL+R  V E+  
Sbjct: 776 PVEDYPAKSRATQGVVSIKVSERN--GKVVGAVQVNDSDEIMLISDQGTLVRTRVGEVST 833

Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898
             R T+GV +  T +DE VV ++RI 
Sbjct: 834 VGRNTQGVRLIRTGEDEHVVGLQRID 859



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +    +  + +     +   ++L  +E+ +
Sbjct: 480 LLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVV 539

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  AT + + + I  L      N +D I+  S +G
Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKL---LVANTHDHILCFSTRG 596

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            L  + V ++ +ASR  +G   V I     +ER+ ++  I+E E 
Sbjct: 597 RLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFEE 641



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 68/436 (15%), Positives = 140/436 (32%), Gaps = 27/436 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL+   +  H+L      +  + E +  IR     E  RR  +  + + 
Sbjct: 469 EHEKILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDE--RRTEITAASHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            DI+DLI+  +            Y  +       + R  +     +    + +  L +  
Sbjct: 527 IDIEDLIEREEVVVTLSREGYVKY--QKLNDYESQRRGGKGKSATKMKEEDFIEKLLVAN 584

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRR------TRIVEGLLDMEDEDCIVREDM 538
                +  S    L  +K   L +       R           E +  +           
Sbjct: 585 THDHILCFSTRGRLYWLKVYQLPLASRNARGRPIVNILPLEANERITAILPIQEFEEGKY 644

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G VK+  L  Y   R  G     +   DE    D+      + ++ FS  G V
Sbjct: 645 VLMATANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDI--TDGSSDIMLFSDAGKV 702

Query: 599 YKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLY 647
            +          G+ +   +    IL+L    R  T +                   +  
Sbjct: 703 VRFNEKARDSETGAVKIDPETGEEILALRPMGRTATGVRGIRLQDGQKVVSLIVPQGDGA 762

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           ++ AT++G  +R  + D+   +R+ +  + +       +++        ++I+L +  G 
Sbjct: 763 ILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKVVGAVQVNDSDEIMLISDQGT 822

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  +  +    GRN+ GVR I   + + V+ +  +   +   +E     +        
Sbjct: 823 LVRTRVGEVSTV-GRNTQGVRLIRTGEDEHVVGLQRIDEVEELEEELEALAEGDETVEAA 881

Query: 765 ISGDTEEITSLKNDSS 780
            S           +  
Sbjct: 882 ASDVDNTTDEDPQNEE 897


>gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/906 (43%), Positives = 557/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIPMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849


>gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 900

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/894 (51%), Positives = 631/894 (70%), Gaps = 5/894 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  VSI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+ AIYD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL + +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP+
Sbjct: 122 ARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D C+  IDNP++ LD L+E++ GPDFPTG +ILGR+GI++A+ATGRGSIV++G
Sbjct: 182 HNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMILGRSGIRSAFATGRGSIVVQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIAAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++ EV++IIR + +P  A REL+ + W  S   + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+QT+AIL+++L RLTGL +D +  EL+S+   IKE +  L 
Sbjct: 422 GLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMVVTV+  GY+KRV 
Sbjct: 482 SGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMVVTVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR Q RGGKG+ G  +++ED +T LF+ +THTS+LFFS+ G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L+ GE IT IMP P +     N  +VF T HGN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLSDGETITNIMPLPSEN--DENQNIVFVTAHGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D ++SV+ C++ + +LL+T LG+ +RF +S +R F  RNS GVRGI LAK 
Sbjct: 660 KIAIKLDEGDRLISVKVCSEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLAKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A+R L +     I S    +  +  I  +   +
Sbjct: 720 DSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNFIDSKLEKTLNDLGIDNKLFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L + E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D 
Sbjct: 779 LAMNEEFILTITENGFGKRTSAYEYRVTNRGGVGITNILTTDRN--GNVVASFPVEQGDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 837 IMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 890



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 4/164 (2%)

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KE   ++P+               L +      I      + + N  +++  T++G  +R
Sbjct: 738 KELYLKVPLAKRLGTAINNFIDSKLEKTLNDLGIDNKLFLKLAMNEEFILTITENGFGKR 797

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVF 716
               ++   NR G     + + D   +V       Q ++I+L T  G+ +R  ++ IR  
Sbjct: 798 TSAYEYRVTNRGGVGITNILTTDRNGNVVASFPVEQGDNIMLITDKGKLIRISVNDIR-I 856

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           AGR++ GV        ++V+S+A +   D+  D        +S+
Sbjct: 857 AGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEIDNSVSS 900


>gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297]
 gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297]
          Length = 881

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/909 (44%), Positives = 560/909 (61%), Gaps = 68/909 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK 
Sbjct: 3   EIAKEILHVNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKLAHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A+I+NPD+D+D LME I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGTLALIENPDLDVDGLMEYIPGPDFPTGAYINGRKGIVEAYRTGRGRIYM 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  +      RE I+V EIPYQVNKA ++EKIAELV+EK+I  I++LRDESD++G R
Sbjct: 243 RAKADVVVDEKTGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKRG S DV+LN LY  T L+++F +N VAL   +P+   L  +L+AF+  R EVV
Sbjct: 303 IAIDLKRGESGDVLLNNLYAQTQLETVFGINAVALVDGQPKVLNLKEMLEAFIRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR R H+L GLA+A+AN+DE++ +IR S     A+  ++ RSW   D+  
Sbjct: 363 TRRTVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++                   D   YLS  Q + IL++RL +LTGL  D +  E   + 
Sbjct: 423 MLERAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQII 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I E L IL+S  RL+ +I++EL+ VKDE    R+T I+   LD+  ED I  EDMVVT
Sbjct: 483 DDIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEIMTSRLDLSMEDLITEEDMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y AQ+RGGKGRS   ++D+DF+  L + S+H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  ARG+ ++N+L L   ER+T I+P    +    + ++  AT  G V++  
Sbjct: 603 RVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFD---PDYFIFMATASGTVKKTS 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F +   SG IA+ LD  D ++ V     E +++L +  G+ VRF    +R   GR +
Sbjct: 660 LDAFSRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVRFKEEHVRPM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGISL  G  VIS+ +                                         
Sbjct: 719 RGVRGISLEDGQSVISLIV----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +E F+LT SE+G+GKRT   +F    R  KG+ A   +  N  G L
Sbjct: 738 ------------PQEEGFVLTASERGYGKRTVMTEFPTKGRGTKGVIAMVSNDRN--GKL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + D+++L+SD+GTL+R  V+EI    R T+GV +   A DE++VS+ERI E E
Sbjct: 784 VGAKQVFNGDEVMLISDQGTLVRTRVDEISSLGRNTQGVKLIRVADDEKLVSIERIEEPE 843

Query: 902 IVDEAESTE 910
            V E    E
Sbjct: 844 DVVEPLEGE 852



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/432 (15%), Positives = 144/432 (33%), Gaps = 36/432 (8%)

Query: 376 LLNKARDRAH--VLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ---RSWNASDIKD 429
            L K     H  ++      + ++ E +RI+       E  R ELM+      +A   + 
Sbjct: 462 RLQKLTGLEHDKLIGEYKQIIDDIGEFLRILNSYERLMEVIREELMEVKDEFGDARKTEI 521

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECL 488
           +   +D S   + ++  M ++   +       L       R    R+       +  E L
Sbjct: 522 MTSRLDLSMEDLITEEDMVVTISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHL 581

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------ 542
            + SS   +L       +      + P+ +R   G   +        E +   +      
Sbjct: 582 LVASSHDTILCFSTFGKVYWLRVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFD 641

Query: 543 --------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                   +  G VK+  L  +   R  G     + + + D +  +        V+  S 
Sbjct: 642 PDYFIFMATASGTVKKTSLDAFSRPRSSG--LIALSLDEGDHLVGVACTDGEREVMLLSD 699

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G V + K   +      ARG   +  +SL  G+                  +V+ A++ 
Sbjct: 700 AGKVVRFKEEHVRPMGRTARG---VRGISLEDGQ------SVISLIVPQEEGFVLTASER 750

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  +++F    R  K  + + S D   +++  +     ++++L +  G  VR  + 
Sbjct: 751 GYGKRTVMTEFPTKGRGTKGVIAMVSNDRNGKLVGAKQVFNGDEVMLISDQGTLVRTRVD 810

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            I    GRN+ GV+ I +A  ++++S+  +   +   +                      
Sbjct: 811 EISSL-GRNTQGVKLIRVADDEKLVSIERIEEPEDVVEPLEGEASESDGDAPQDDVIDTS 869

Query: 772 ITSLKNDSSVEG 783
             +    S  + 
Sbjct: 870 ADTSDTQSDADD 881


>gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83]
          Length = 875

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+S  
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSLQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
 gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587]
          Length = 894

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/919 (42%), Positives = 560/919 (60%), Gaps = 92/919 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ L                               
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                  +  +     +   E  +LTV+E G+GKRTS  ++   
Sbjct: 751 ----------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 847 TLIRTSEGESVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
 gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893]
          Length = 859

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/910 (43%), Positives = 568/910 (62%), Gaps = 70/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVDF  NYDG+ Q P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+V+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEIVNGCLALIDNPDMTIDDLMEHIPGPDFPTQGIINGRAGIVEAYRTGRGRIYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE     +R+ I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G R
Sbjct: 243 RARHEIEHDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DV++N L+ +T LQ++F +NMVAL   +P+   L  +L AFV  R EVV
Sbjct: 303 VVIELRRGENPDVVINNLFAHTQLQTVFGINMVALINGEPKILNLKEMLDAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP    A+ +LM + W   D+  
Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + L+IL    RL+ +I++EL +V  E    R T I     D+   D I  ED+VVT
Sbjct: 483 EKIADLLEILGDPDRLMQVIREELEAVVSEFGDNRLTEITSSKRDLTIADLIDEEDLVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  +RG+ ++NIL L +GERITT +P  +      + YV+ AT  G V++  
Sbjct: 603 RVFEIPRASRASRGRPMVNILPLEEGERITTFLPVRDYP---EDQYVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   +G IA+ LD  D ++       + +++L +  G+ VRF   A+R  + R +
Sbjct: 660 LPNFSRPRSNGLIALSLDEGDTLIGTAITKGDAEVMLFSSAGKAVRFNEEAVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI + +G  V+S+ I                                         
Sbjct: 719 RGVRGIRMPEGHHVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++  +LT SE G+GKRT+  +F   +R  +G+ A   S+ N  G L
Sbjct: 738 ------------PQEDAVLLTASENGYGKRTTFDEFPTYSRGSQGVIAMQCSERN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           V    + + D+++L+SDKGTL+R   +E+ + SR T+GV +   + +DER+V VERI E+
Sbjct: 784 VTALQLFEGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843

Query: 901 EIVDEAESTE 910
           +  +E +  E
Sbjct: 844 DA-EEVDGEE 852


>gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
 gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4]
          Length = 867

 Score =  918 bits (2372), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/923 (42%), Positives = 560/923 (60%), Gaps = 80/923 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNPGATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ LM+RSW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIAKQGLMERSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLARAETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +    +                          
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLVAGSEE-------------------------- 751

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                     Q +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 752 --------------------------QTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI----RESEIVDEAESTE 910
             +++I         VDEA   E
Sbjct: 844 SGLQQIAEAEEGEGEVDEASDGE 866


>gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86]
          Length = 875

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  T++DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  ++ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B]
          Length = 875

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171]
 gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171]
          Length = 875

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  +A+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRSAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRSAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1]
 gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1]
          Length = 875

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 578/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017]
          Length = 875

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 816

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/898 (42%), Positives = 555/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ E  +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDEEEE 814


>gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145]
 gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145]
          Length = 879

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/892 (45%), Positives = 575/892 (64%), Gaps = 63/892 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            ++ ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K 
Sbjct: 7   EVSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           ++K AH LL DL K+TVDF  NYDG+ + P VL  + PN++VNG  GIAVGMATNIP HN
Sbjct: 127 MEKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++G +A+IDNP+I ++ LME I GPDFPT A I GR+GI  AY TGRG I +R  +
Sbjct: 187 LTEVINGTLALIDNPEISIEELMEFIPGPDFPTAASISGRSGIVEAYKTGRGRIHLRAKA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++RG   +V+LN LY  T +Q +F +NMVAL+  +P+ F L  +L AFV  R EVV RR+
Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQPKLFNLYQVLDAFVRHRREVVTRRS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR+RAH+L GLAI++AN+DEV+ +IR SP P  A++ L+ R W   ++  +++ 
Sbjct: 367 VYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLES 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG+ YL+E Q +AIL+LRL +LTGL  + I +E   L  +I+
Sbjct: 427 AGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQIE 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL+ ++D     R+T I     D+  ED I  ED+VVT+SH 
Sbjct: 487 ELLHILRSTERLMEVIREELVEIRDNFGDARKTEITAAAHDISMEDLINEEDVVVTLSHE 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG++   M+D+DFV  L++ +TH ++L FS+ G +Y  KV++
Sbjct: 547 GYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRGRIYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RGK ++N+L L   ERIT I+P  +      + +V+ ATKHG V++  L ++
Sbjct: 607 LPLASRASRGKPIVNLLPLESDERITAILPTRDYP---EDKFVIMATKHGTVKKTPLPEY 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +    G IA+ L+  DE++ V+    E +I+L +  G+ VRF    +R   GR + GVR
Sbjct: 664 SRPRNGGIIALNLNEGDELIGVDITDGEQEIMLFSDGGKVVRFREDQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +G +V+S+ +    +                                        
Sbjct: 723 GIRLEEGQKVVSLIVPGTYED--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     ++  ILTV+E GFGKRT   ++   +R+ KG+ +  VS+ N  GA+V   
Sbjct: 744 ---------EQQAAILTVTENGFGKRTLVEEYPTKSRATKGVVSIKVSERN--GAVVGAM 792

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V D ++I+L+S+KGTL+R  VNE+ +  R T+GV +  T  DE+VV ++RI
Sbjct: 793 EVVDGNEIMLISNKGTLVRTRVNEVSMVGRNTQGVRLIRTGDDEQVVGLQRI 844



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 150/426 (35%), Gaps = 30/426 (7%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  IR   N   AR+  +  + + 
Sbjct: 470 EHEKILDEYKGLLKQIEELLHILRSTERLMEVIREELVEIR--DNFGDARKTEITAAAHD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             ++DLI+  D            Y  L+E + +       A       D +     +   
Sbjct: 528 ISMEDLINEEDVVVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +            + ++++       R T I+            
Sbjct: 588 DTILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLESDERITAILPTRD-------Y 640

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +  V+  +  G VK+ PL  Y   R GG     +   DE    D+        ++ FS
Sbjct: 641 PEDKFVIMATKHGTVKKTPLPEYSRPRNGGIIALNLNEGDELIGVDI--TDGEQEIMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V + +  ++      A G   +  + L +G+++ +++  P          ++  T+
Sbjct: 699 DGGKVVRFREDQVRSMGRTATG---VRGIRLEEGQKVVSLI-VPGTYEDEQQAAILTVTE 754

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  + ++   +R+ K  + +   +     +        N+I+L +  G  VR  +
Sbjct: 755 NGFGKRTLVEEYPTKSRATKGVVSIKVSERNGAVVGAMEVVDGNEIMLISNKGTLVRTRV 814

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +    GRN+ GVR I     +QV+ +  +   D D  E +     +S          +
Sbjct: 815 NEV-SMVGRNTQGVRLIRTGDDEQVVGLQRIDEVDEDELEDVVVEGEVSEATSEQQPSDK 873

Query: 771 EITSLK 776
              + +
Sbjct: 874 SEANDE 879


>gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong]
 gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong]
          Length = 905

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 469/906 (51%), Positives = 650/906 (71%), Gaps = 8/906 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E +E  I  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M + G 
Sbjct: 1   MSEQEYKESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGY 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +NK+Y K AR+ G+V+GKYHPHG  A+YD+L RMAQD+SLRL L++GQGNFGS+DGD  
Sbjct: 61  HYNKQYRKSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL+K AH LL+D+ KDTVDF+ NYDG  QEP VL A +PN+LVNG GGIAVG
Sbjct: 121 AAMRYTEVRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD C A IDN +I +  LME+++GPDFPTG  I+G  GIK+AY TGR
Sbjct: 181 MATNIPPHNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTFGIKSAYNTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG + IE  S     I++TEIP+ VNKA+++EKIAELV +KRI  I+ +RDES++
Sbjct: 241 GKIIVRGKTDIESDSLKH-AIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELK+ A+ D+ILNQLY YTSLQ+ F+V M+AL+   P+  TL  I+ AF  FR
Sbjct: 300 SGIRVVIELKKHANTDLILNQLYSYTSLQTTFNVMMLALDQGIPKTMTLKDIIVAFTNFR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ +RT +LLNKARD+AH+LVG+ IAV+N+DEV++IIR S N E A+  LM R WN S
Sbjct: 360 EEVITKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVS 419

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D+ DL+ L+DD    +  DG  +L+E QT++ILELRL RLT   R  + +ELN+L  EIK
Sbjct: 420 DVYDLVKLVDD-RAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIK 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L+IL SR +LL  +K EL  +K++  T R T I     + + ED I  E++VVTV+  
Sbjct: 479 AYLEILGSRDKLLETMKFELNQIKEQFSTARLTTIENQEFEQDIEDLIPEEEVVVTVTLA 538

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPLS YRAQ+RGGKGR G  +++ED +T LFI +THTS+LFFS++G VY  KV++
Sbjct: 539 GYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLKVYK 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSD 664
           LP+G+PQ++G+ +IN++S+ + E IT IMP P E E+     Y++FATKHGN+RRN LSD
Sbjct: 599 LPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRNDLSD 658

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +GKIA++LD  D ++SV++C +EN +LL T+ G+ +RFP+  +RVF  R S GV
Sbjct: 659 FKHIASNGKIAIRLDEGDSLISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRTSDGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I LA  D VISM I+   +   + R  Y+    + R LI+ +     S+      + N
Sbjct: 719 KAIKLAGNDAVISMTILKGINCSLEVRENYLNLPVSNRLLIAKNKLLHPSID---LSKYN 775

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           ++E+    +   E+FILTVSE G+GK +S+Y++R++ R GKG+   +VS  ++ G +V+V
Sbjct: 776 LTEDEMLTMASNEEFILTVSENGYGKFSSAYEYRVTKRGGKGVANMNVS--SKTGKVVSV 833

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            P   +++++L++  G LIR  +N +RI  R+T GV++F T+KDE+VVS++ I++++  D
Sbjct: 834 LPACQDNELMLITSSGKLIRCQLNSVRIIGRSTSGVILFKTSKDEKVVSIDTIKDTDYSD 893

Query: 905 EAESTE 910
           +    E
Sbjct: 894 DCSDDE 899


>gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933]
 gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli
           O157:H7 str. EDL933]
          Length = 875

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++  ME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE  +V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5]
 gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 889

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/903 (44%), Positives = 563/903 (62%), Gaps = 69/903 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGREGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQ++F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQAVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVM 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 TMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG+ L+N+L L++GE ITT++P  E        Y+  AT +G V++ 
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDEGEYITTMLPVEEYT---EGHYIFMATANGTVKKT 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR 
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ LA+G ++ISM I                                        
Sbjct: 719 ARGVRGMRLAEGQKLISMLI---------------------------------------- 738

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +   ILT SE+GFGKRT+  +F    R G+G+ A   ++ N  G 
Sbjct: 739 -------------PEEGSQILTASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERN--GR 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V D ++I+L+SD+GTL+R  V+E+    R T+GV +   A DE +V +ER++E 
Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQEP 843

Query: 901 EIV 903
             +
Sbjct: 844 SEI 846



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 15/260 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +       +   +  G VK+ PL  +  QR  G     + + + D +    I      V+
Sbjct: 639 EEYTEGHYIFMATANGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVM 696

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G V + K   +      ARG   +  + L +G+++ +++             ++ 
Sbjct: 697 LFSDGGKVTRFKESDVRAMGRTARG---VRGMRLAEGQKLISML------IPEEGSQILT 747

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           A++ G  +R  + +F +  R G+  + + S +     +         +I+L +  G  VR
Sbjct: 748 ASERGFGKRTAIGEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVR 807

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +    GRN+ GV  I LA  + ++ +  V        E     +    +  ++  
Sbjct: 808 TRVDEVSSL-GRNTQGVTLIKLASDETLVGLERVQEPSEIEGEEFEGEEGAEFEGAVLDA 866

Query: 768 DTEEITSLKNDSSVEGNISE 787
             +   + +   +      E
Sbjct: 867 VADTDEAAEGQQADAAGEEE 886


>gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
 gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13]
 gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576]
 gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346]
          Length = 888

 Score =  918 bits (2371), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 24  DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 84  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 204 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 383

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 443

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 444 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 504 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 624 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 680

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 681 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 740

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L    QVI+M +                               
Sbjct: 741 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 768

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 769 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 807

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 808 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 865

Query: 892 VSVERI 897
             +++I
Sbjct: 866 SGLQQI 871



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 492 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 551

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 552 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 611

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 612 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 668

Query: 898 RE 899
           +E
Sbjct: 669 KE 670


>gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
 gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165]
          Length = 888

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/902 (46%), Positives = 570/902 (63%), Gaps = 35/902 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  +SI +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q G   +K 
Sbjct: 3   ELAKDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI++AY TGRG + +
Sbjct: 183 PPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIEDAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ + D SD++G  +
Sbjct: 243 RAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I++AFV  R EVV 
Sbjct: 303 VIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQIIEAFVMHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R W+  ++  +
Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSEVQ RAILELRL RLTGL  + I +E   L +
Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLV 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  +K E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSCGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L        T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKGENERITAILPVPNGEFSADKFIFMATASGTVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF  +A+R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITNGESEIMLFSAQGRVVRFAETAVRGM-GRVA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L                          +        +  +T E    +  SSV
Sbjct: 722 TGVRGIKL-----------------------ATTEISVDDAEEVDIETVENEEAEEASSV 758

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                +     +   +  ILTV++ G+GKRT+  ++ + +R+ KG+ +  V++ N  G +
Sbjct: 759 NLTTDKVVSLVIPHTQGEILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERN--GKV 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V +NDQI+L++D GTL+R  VNE+ +  R T+GV I  TA+DE VVS+ERI E E
Sbjct: 817 VAAVQVEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIE 876

Query: 902 IV 903
             
Sbjct: 877 DD 878



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 78/236 (33%), Gaps = 19/236 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +   S D  L  +   QE+ ++  +  G     P+S       R   G     + + D +
Sbjct: 520 ITAASGDINLE-DLIAQEDVVVTLSHAGYVKYQPLSDYEA-QRRGGKGKSATKMKEDDFI 577

Query: 736 ISMAIVLHADA-------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + +    D            ++   +   A R         I  L    +        
Sbjct: 578 EKLLVANTHDTILCFSSCGRLYQLKVYQLPQASRGARGTPIVNILPLVKGENERITAILP 637

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   ++FI   +  G  K+ S   F  SN    G+ A  + +      L+ V   N
Sbjct: 638 VPNGEFSADKFIFMATASGTVKKVSLDAF--SNVRSSGLIALKLREG---DELIGVDITN 692

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              +I+L S +G ++R     +R   R   GV     A  E  +SV    ++E VD
Sbjct: 693 GESEIMLFSAQGRVVRFAETAVRGMGRVATGVRGIKLATTE--ISV---DDAEEVD 743



 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 55/113 (48%), Gaps = 4/113 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  L ++   +R+ K  + +   +   ++++     + + I+L T  G 
Sbjct: 777 ILTVTQNGYGKRTALGEYPVKSRATKGVVSIKVNERNGKVVAAVQVEENDQIMLITDAGT 836

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            VR  ++ +    GRN+ GVR I  A+ + V+S+  +   + D  E +   + 
Sbjct: 837 LVRTRVNEV-SLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIENLSVEEA 888



 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAI 740
           D+++S+     + +IL  T+ G   R  +        R + GV  I + +   +V++   
Sbjct: 763 DKVVSLVIPHTQGEILTVTQNGYGKRTALGEY-PVKSRATKGVVSIKVNERNGKVVAAVQ 821

Query: 741 VLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           V   D          +         + G   +   +   +  E  +S ER  E++     
Sbjct: 822 VEENDQIMLITDAGTLVRTRVNEVSLVGRNTQGVRIIRTAEDEHVVSLERICEIEDDGIE 881

Query: 800 ILTVSE 805
            L+V E
Sbjct: 882 NLSVEE 887


>gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
 gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B]
          Length = 901

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/923 (43%), Positives = 570/923 (61%), Gaps = 92/923 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K AH LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+ P++ ++ LME I GPDFPT A+I G+ GI+ AY TGRG  ++R  
Sbjct: 186 NLTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAIINGKKGIEEAYRTGRGKAIMRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +QS F +NMVAL   +P+ F L  +L+AF+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQSSFGINMVALANGQPKLFNLKEMLEAFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L  LA+A+AN+D ++ +I+ S +P  A+  L+ + W    +K +++ 
Sbjct: 366 VYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +++E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  + ++    RRT I    +D+  ED I  ED+VVT+SHL
Sbjct: 486 GLLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDISLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ ++N+L L +GERIT I+P  E E      Y++ AT HG V++  L+++
Sbjct: 606 LPLASRQARGRPIVNLLPLQEGERITAILPVREYE---EGKYILMATSHGTVKKTALTEY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
            +   +G IA+ L   D+++ V+     ++I+L +  G+ VRF                 
Sbjct: 663 SRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRGI+L +G +V+S+ +                    
Sbjct: 723 DEEGKPQINFKGVRPM-GRGATGVRGIALEEGQRVVSLIV-------------------- 761

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                               +  ILTV+  GFGKRT   ++   
Sbjct: 762 ---------------------------------PKDDSAILTVTANGFGKRTELAEYPAK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R+ KG+ +  V++ N  G +V    V +ND+I+L+SDKGTL+R P   + I  R T+GV
Sbjct: 789 SRATKGVVSIKVTERN--GPVVGAVQVGENDEIMLISDKGTLVRTPAIGVSIIGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRESEIV 903
            I  TA DE VV ++RI E +  
Sbjct: 847 TIIRTADDETVVGLQRIDEIQDD 869



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 68/223 (30%), Gaps = 33/223 (14%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ ++  + LG     P++  +    R   G     +   D V  + +    D   
Sbjct: 532 LINEEDVVVTLSHLGYAKYQPLTDYQA-QRRGGKGKAATKVKDEDFVEKLLVANTHDTIL 590

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              D    Y   +                          I+         + ++IL  + 
Sbjct: 591 CFSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERITAILPVREYEEGKYILMATS 650

Query: 806 KGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
            G  K+T+  ++    SN    GI A ++        L+ V   + + +I+L SD G ++
Sbjct: 651 HGTVKKTALTEYSRPRSN----GIIAVNLKDG---DQLIGVDITDGSSEIMLFSDAGKVV 703

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           R                      + E V  V+      + +E 
Sbjct: 704 RF--------------------KEGEEVAVVDENGNPVLDEEG 726



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 69/455 (15%), Positives = 147/455 (32%), Gaps = 62/455 (13%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII-------RFSPNPETARREL 417
             E +++  + LL       H+L      +  + E + +I       R +    +A    
Sbjct: 469 EHEKILQEYEELLEIIAGLLHILRSPERLMEVIKEELELILEQFGDNRRTEINASAVDIS 528

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++   N  D+   +  +  + Y         L++ Q +                  +   
Sbjct: 529 LEDLINEEDVVVTLSHLGYAKYQP-------LTDYQAQRRGG------------KGKAAT 569

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                +  E L + ++   +L       L        P  +R   G   +        E 
Sbjct: 570 KVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQLPLASRQARGRPIVNLLPLQEGER 629

Query: 538 MVVTV--------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +   +              +  G VK+  L+ Y   R  G     V ++D D +  + I 
Sbjct: 630 ITAILPVREYEEGKYILMATSHGTVKKTALTEYSRPRSNG--IIAVNLKDGDQLIGVDIT 687

Query: 584 STHTSVLFFSSLGFVYKEKVWRL-----PIGSP--QARGKALINILSLNQGER------- 629
              + ++ FS  G V + K           G+P     GK  IN   +    R       
Sbjct: 688 DGSSEIMLFSDAGKVVRFKEGEEVAVVDENGNPVLDEEGKPQINFKGVRPMGRGATGVRG 747

Query: 630 --ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI--- 684
             +             ++  ++  T +G  +R +L+++   +R+ K  + +   +     
Sbjct: 748 IALEEGQRVVSLIVPKDDSAILTVTANGFGKRTELAEYPAKSRATKGVVSIKVTERNGPV 807

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +      + ++I+L +  G  VR P   +    GRN+ GV  I  A  + V+ +  +   
Sbjct: 808 VGAVQVGENDEIMLISDKGTLVRTPAIGV-SIIGRNTQGVTIIRTADDETVVGLQRIDEI 866

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             D  E +      +    +   DT+      +++
Sbjct: 867 QDDGSEYLEEGVEGAEGDIIAEADTQPTDDANDEA 901


>gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 903

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/908 (42%), Positives = 562/908 (61%), Gaps = 32/908 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M  +G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + +
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEVKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLQAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   L+EVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLISPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L KG++V+S+ +   A     +          +   ++       +  +D++  
Sbjct: 719 GVRGIRLTKGEEVVSLIVAERAAGVESDVEEESVEDVVETTDVADAAVIEVAENDDTA-- 776

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 777 ----------------YILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+  S  
Sbjct: 819 RAVLLGGTDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 903 VDEAESTE 910
             E    +
Sbjct: 879 EVEDVVDD 886



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 4/139 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              E   + +  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 765 AVIEVAENDDTAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 824

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + ++ 
Sbjct: 825 GTDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLDEVEDV 883

Query: 752 ICYMKHMSAQRRLISGDTE 770
           +       A        TE
Sbjct: 884 VDDAAVAPAPSTSELPPTE 902


>gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383]
 gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383]
          Length = 867

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A+ ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGEELTSVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147]
          Length = 866

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 557/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L +G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDEGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDVRRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646

Query: 898 RE 899
           RE
Sbjct: 647 RE 648


>gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1]
 gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
 gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1]
 gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH]
 gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU]
 gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20]
          Length = 888

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 24  DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 84  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 144 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 204 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 263

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 264 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 323

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 324 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 383

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 384 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 443

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 444 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 503

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 504 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 563

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 564 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 623

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 624 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFS---ADKYVFMT 680

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 681 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 740

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L    QVI+M +                               
Sbjct: 741 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 768

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 769 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 807

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 808 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 865

Query: 892 VSVERI 897
             +++I
Sbjct: 866 SGLQQI 871



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 492 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 551

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 552 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 611

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 612 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 668

Query: 898 RE 899
           RE
Sbjct: 669 RE 670


>gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315]
 gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315]
          Length = 867

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 556/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGEELTAVKAEFGDARRSR 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH]
          Length = 866

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12]
          Length = 875

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I  PDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
 gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226]
          Length = 894

 Score =  917 bits (2370), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/919 (42%), Positives = 559/919 (60%), Gaps = 92/919 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG   L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ L                               
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKL------------------------------- 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                  +  +     +   E  +LTV+E G+GKRTS  ++   
Sbjct: 751 ----------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTK 788

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+GV
Sbjct: 789 GRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGV 846

Query: 881 VIFSTAKDERVVSVERIRE 899
            +  T++ E VV ++RI E
Sbjct: 847 TLIRTSEGESVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8]
 gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8]
          Length = 856

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/898 (44%), Positives = 559/898 (62%), Gaps = 69/898 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+GC+A+IDNPD+ +D LME I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVVNGCLALIDNPDLTVDELMEFIPGPDFPTQGIINGRAGIVEAYRTGRGRIYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE      RE I++TE+PYQ+NKA ++EKIAELV+EKR+  I++LRDES+++G R
Sbjct: 243 RARHEIEQDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DVI+N L+  T L+++F +NMVAL   +P+   L  +L AFV  R EVV
Sbjct: 303 VVIELRRGENPDVIINNLFAQTQLETVFGINMVALINGEPKTLNLKEMLDAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+R H+L GL +A+AN+DE++ +I+ SP+   A+ +LM + W   D+  
Sbjct: 363 TRRTIYELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL    RL+ +I+ EL  +  +    RRT I     D+   D I  ED+VVT
Sbjct: 483 EKIADLLDILGDPERLMQVIRDELAEIVSQYGDERRTEITSSRRDLTIADLIDEEDLVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDF+  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P GS  +RG+ ++NIL L++GERITT +P  +      + +V+ AT  G V++  
Sbjct: 603 RVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYP---EDQFVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++         +++L +  G+ VRF    +R  + R +
Sbjct: 660 LPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI + +G  V+S+ I                                         
Sbjct: 719 RGVRGIKMPEGHHVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +   ILT SE G+GKRT+  +F   +R  +G+ A   S+ N  G L
Sbjct: 738 ------------PQEGGVILTASEHGYGKRTAIDEFPAYSRGSQGVIAMQCSERN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIR 898
           V    + D DQ++L+SDKGTL+R   +E+ + SR T+GV +   A +DER+V VERI 
Sbjct: 784 VTALQLFDGDQMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIRLAQEDERLVGVERIA 841


>gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336]
 gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT]
 gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336]
          Length = 881

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/913 (45%), Positives = 579/913 (63%), Gaps = 47/913 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +T VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDFTP--------NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q    +NK YVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV
Sbjct: 53  DQSSNTYNKAYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG  
Sbjct: 113 DGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A +DN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 173 GIAVGMATNIPPHNLNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALINGRKGIEEA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + IE     RE IVVTEIPYQVNKA ++EKIAELVREK+I  I+++R
Sbjct: 233 YKTGRGKIYVRAKAEIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVR 292

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G RV +E+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++A
Sbjct: 293 DVSNKEGNRVEVEVKRDAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKLLNLKQIIEA 352

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EV+ RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ +
Sbjct: 353 FVRHRREVITRRTVFELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQ 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +W   ++  ++      S    +        DG  YLS+ Q RAIL+LRL RLTGL  + 
Sbjct: 413 AWELGNVATMLSATGVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEK 472

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I  E   + IEI + L IL+S  RL  ++ +EL  VK+E    RRT I     D+  ED 
Sbjct: 473 IVTEYQEILIEIGKLLHILNSADRLKEVLCEELEKVKEEFGDARRTEITSASGDINLEDL 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +ED++VT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L F
Sbjct: 533 ITQEDVIVTLSHAGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCF 592

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G +Y  KV++LP  +  ARG+ ++NIL L + ERIT I+P    E    + ++V AT
Sbjct: 593 SSRGRLYWLKVYQLPQANRGARGRPIVNILPLQENERITAILPVAAYE---EDKFIVMAT 649

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  +A
Sbjct: 650 AGGLVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGTNEIMLFSSQGRVVRFEENA 709

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI LA                                   + + E+I
Sbjct: 710 VRAM-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDI 743

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           +       ++ N+ +     +   +  ILT ++ G+GKRT+  ++   +R+ KG+ +  V
Sbjct: 744 SDEDTKEPLDLNVDKVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKV 803

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S  N  G +VA   V +NDQI+L++D GTL+R  V+EI I  R T+GV +  TA+ E+VV
Sbjct: 804 SDRN--GKVVAATQVEENDQIMLITDAGTLVRTRVSEISIVGRNTQGVRLIRTAETEQVV 861

Query: 893 SVERIRESEIVDE 905
           S+ER+ +++  +E
Sbjct: 862 SLERVCDTDEDEE 874



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 26/239 (10%)

Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ED  + + +  G VK++ L+ +   R  G     + +RDED +  + I      ++ FS
Sbjct: 640 EEDKFIVMATAGGLVKKIALTEFSRPRSSG--IIALNLRDEDELIGVDITDGTNEIMLFS 697

Query: 594 SLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQGERITTIMP------------- 635
           S G V + +   +          +    AL N +S ++       +              
Sbjct: 698 SQGRVVRFEENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEDISDEDTKEPLDLNVD 757

Query: 636 -FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCT 691
                    N+  ++ AT++G  +R  LS++   +R+ K  + +   D   ++++     
Sbjct: 758 KVVSLVIPKNDGAILTATQNGYGKRTALSEYPTKSRNTKGVISIKVSDRNGKVVAATQVE 817

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           + + I+L T  G  VR  +S I    GRN+ GVR I  A+ +QV+S+  V   D D + 
Sbjct: 818 ENDQIMLITDAGTLVRTRVSEI-SIVGRNTQGVRLIRTAETEQVVSLERVCDTDEDEEN 875


>gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
 gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium
           profundum SS9]
          Length = 894

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/899 (45%), Positives = 567/899 (63%), Gaps = 74/899 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   PVV+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A IDN DI ++ LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALINGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     RE I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+V+E
Sbjct: 246 ANIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +VILN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVILNNLYSQTQLQTTFGINMVALDHGQPKLFGLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +I+ +P P+ AR  L+   W   D+  +++ 
Sbjct: 366 IFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +              G  +L+E Q +AILELRL RLTGL  + I  E   L   I+
Sbjct: 426 GGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVIE 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I+ EL +VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLLILGSPERLMEVIRDELHAVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+    M+DEDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E E    + YV  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVREYE---ADKYVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------IRVFAG 718
            +   +G IA+ L   D ++ V+     +DI+L +K G+ VRF  SA       +R   G
Sbjct: 663 SRPRSAGIIAVNLRDGDSLIGVDITNSTDDIMLFSKFGKVVRFYESADENGKGGVRGM-G 721

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ LA GD+V+S+ +                                      
Sbjct: 722 RTAAGVRGMKLAAGDKVVSLIV-------------------------------------- 743

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             E  +LTV+E G+GKRT+  ++   +R+ +G+ +  VS  N  
Sbjct: 744 ---------------PHNEGDVLTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRN-- 786

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G++V      D D+ +++++ GTL+R  V E+    R T+GV +  TA  E VV ++RI
Sbjct: 787 GSVVGAVQAEDGDEFMMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTADKELVVGLQRI 845



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 100/264 (37%), Gaps = 16/264 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL+ +   R  G     V +RD D +  + I ++   ++ F
Sbjct: 639 YEADKYVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRDGDSLIGVDITNSTDDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGK----ALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           S  G V +        G    RG     A +  + L  G+++ +++         N   V
Sbjct: 697 SKFGKVVRFYESADENGKGGVRGMGRTAAGVRGMKLAAGDKVVSLI------VPHNEGDV 750

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705
           +  T++G  +R  L+++   +R+ +  + +   D     +        ++ ++ T  G  
Sbjct: 751 LTVTENGYGKRTALTEYPAKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITNGGTL 810

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  ++ +    GRN+ GV  I  A  + V+ +  +   +    E    +          
Sbjct: 811 VRTRVAEV-SRVGRNTQGVTLIRTADKELVVGLQRIDELEVVELEEDAIVDGDVEVAVDG 869

Query: 766 SGDTEEITSLKNDSSVEGNISEER 789
               +   + + ++  E   S + 
Sbjct: 870 EQVVDTDAAQQPEADSEQGESTDE 893


>gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264]
 gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264]
          Length = 866

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAEAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243]
 gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b]
 gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668]
 gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a]
 gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98]
 gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14]
 gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9]
 gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210]
 gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894]
 gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177]
 gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112]
 gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215]
 gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
 gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243]
 gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b]
 gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668]
 gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a]
 gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305]
 gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237]
 gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9]
 gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b]
 gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a]
          Length = 866

 Score =  917 bits (2369), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L    QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
 gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17]
          Length = 916

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/907 (51%), Positives = 625/907 (68%), Gaps = 23/907 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    ++      I+++SI DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+  
Sbjct: 1   MADETTLAEP---SDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G    K Y K ARI G+VMGKYHPHG++AIYDALARMAQDWS+R+ LI+GQGNFGS+
Sbjct: 58  AESGFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSM 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DPPAA RYTE RL K A+ LLDDL KDTVDF+PNYDGS +EP VL A+YPN+LVNG G
Sbjct: 118 DPDPPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVV+ C+A ++N  I ++ L EI+  PDFPTGA+ILGR+G ++A
Sbjct: 178 GIAVGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALILGRSGARSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R    IE+  GDR  IV+TEIPYQ  K A++EKIAE  +EKRI  I+D+R
Sbjct: 238 YQTGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VI+LKR A+ +V+LNQL+R+T  Q+ F  NM+A+ G +PE   L  I++A
Sbjct: 298 DESNREGVRIVIDLKRDATPEVVLNQLWRHTPAQTSFPANMLAIRGGRPELLNLRDIIQA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FRE+V+ RR+K+ L KAR+RAH+L+GL IAV NLDEVVRIIR S +P  AR  L+ R
Sbjct: 358 FVQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  ++I   I L++      G   T  LSE Q RAIL+LRL RLT LGRD+I +EL  L
Sbjct: 418 EWPIAEIAPYIRLVEAVESE-GFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGL 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+IL++R +L  +++ EL++++D+  TPRR+ I      ++DED I REDMVV
Sbjct: 477 ADSITELLEILANRVKLYEVMRGELVAIRDQFATPRRSEIAAAADGIDDEDLIEREDMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR PL  +RAQ RGGKGRSG+  +DED VT+LF+ STHT VLFFS+ G VY+
Sbjct: 537 TVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFSNHGKVYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KVWRLP G P  RG+ ++N+L L  GE I+T++P PEDE+ W  L+V+FAT  G VRRN
Sbjct: 597 YKVWRLPEGGPATRGRPMVNLLPLAPGEVISTVLPLPEDEAEWGKLHVMFATAKGAVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +  F  +  +GKIAM+ D    D ++ V     E+D+LL T+ G+ +RF    +R F  
Sbjct: 657 SMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRAIRFAADDVREFQS 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVRGI+L   D+VIS++++       +ER  Y++    +                +
Sbjct: 717 RTSTGVRGIALKGEDEVISLSVLHRVGTTQEEREAYLRFAPWKG---------------E 761

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  +S ER +EL+  EQFILTV   G+GK +S+Y++R + R G+GI   D    N  
Sbjct: 762 KEGEPELSVERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARN-- 819

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA FP +   Q++LV+D+  LIR+ +  +R+  R + G+ +F+ A  E VVS  RI 
Sbjct: 820 GDVVASFPASKGHQLMLVTDQAKLIRMSLASLRVIGRGSAGLRLFNVAPGEHVVSAARIE 879

Query: 899 ESEIVDE 905
           E+E   E
Sbjct: 880 ETEEDAE 886



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 88/274 (32%), Gaps = 34/274 (12%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G V+R  +  +      GK         ED +  + ++     VL  +  G  
Sbjct: 644 VMFATAKGAVRRNSMDAFTNVPSNGKIAMRFDDESEDRLIGVALLGAEDDVLLATRCGRA 703

Query: 599 YKEKVWRLPI-----------------------------GSPQARGKALINILSLNQGER 629
            +     +                               G+ Q   +A +        + 
Sbjct: 704 IRFAADDVREFQSRTSTGVRGIALKGEDEVISLSVLHRVGTTQEEREAYLRFAPWKGEKE 763

Query: 630 ITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV- 687
               +     E       +++    +G  + +   ++ +  R G+    +D+      V 
Sbjct: 764 GEPELSVERYEELRESEQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGDVV 823

Query: 688 --ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                ++ + ++L T   + +R  ++++RV  GR S G+R  ++A G+ V+S A +   +
Sbjct: 824 ASFPASKGHQLMLVTDQAKLIRMSLASLRVI-GRGSAGLRLFNVAPGEHVVSAARIEETE 882

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            D +  +       A               ++  
Sbjct: 883 EDAEMNLADGTAEIAPEPDAEVGENLAAGPEDGE 916


>gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344]
 gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229]
 gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247]
 gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
 gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344]
 gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229]
 gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247]
 gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280]
 gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399]
          Length = 866

 Score =  916 bits (2368), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L    QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           RE
Sbjct: 647 RE 648


>gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91]
          Length = 866

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDKFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L    QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ]
 gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ]
          Length = 910

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/951 (42%), Positives = 563/951 (59%), Gaps = 107/951 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A+ID+P++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLTEVIDGCLALIDDPELTIDQLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE       R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARAEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQPRLLNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVE 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  YLS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S  RLL +I++EL  +K E    RRT IV   +D+   D I  E+ VV
Sbjct: 483 LGQIGELIRILTSPERLLEVIREELEKIKAEFGDARRTEIVASQVDLTIADLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG++   ++DED+V  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL-------------- 646
            K + +P  S  +RG+ L+N+L L++GE IT ++    +     N               
Sbjct: 603 LKTYEIPEASRTSRGRPLVNLLPLDEGEGITAMLQVDLEALQQQNGADDELDEAEGALLE 662

Query: 647 --------------------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                                     Y+  AT  G V++  L  F +  ++G IA+ L  
Sbjct: 663 GEVVETAETEEVEGETAELVAEPTGAYIFMATAFGTVKKVPLVQFSRPRKAGLIALDLVE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++  T     +++L +  G+ +RF    +R   GRN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAATTDGAKEVMLFSDAGKVIRFAERVVRTM-GRNARGVRGMKLGKGQRLISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+G+GKRT    F    R G+G+ A   ++ N  GAL+    V + ++I+L+SD+G
Sbjct: 789 LTASERGYGKRTPLSKFPRRGRGGQGVIAMVTNERN--GALIGAVQVREGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE-SEIVDEAESTE 910
           TL+R  V+E+    R T+GV++   A+DE +V +ER++E S+  DE    E
Sbjct: 847 TLVRTRVDEVSSLGRNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDE 897



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 15/234 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+VPL  +   R+ G     + + + D +           V+ FS  G 
Sbjct: 689 YIFMATAFGTVKKVPLVQFSRPRKAG--LIALDLVEGDTLIAAATTDGAKEVMLFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G+R+ +++         +   ++ A++ G  
Sbjct: 747 VIRFAERVVRTMGRNARG---VRGMKLGKGQRLISML------IPESGAQILTASERGYG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + + +     +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMVTNERNGALIGAVQVREGEEIMLISDQGTLVRTRVDEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              GRN+ GV  I LA+ + ++ +  V     + DE     +   A       D
Sbjct: 858 SL-GRNTQGVMLIKLARDETLVGLERVQEPSDNGDELFDDEETTPAGVAEGGED 910


>gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
 gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424]
          Length = 867

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+E+R   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12]
 gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12]
          Length = 905

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/925 (43%), Positives = 563/925 (60%), Gaps = 88/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI +AY TGRG  ++R  
Sbjct: 186 NMTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + ++     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+VIE
Sbjct: 246 AEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +++ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMIECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++ 
Sbjct: 366 VFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL++ Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RLL +IK+EL  + +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG+S   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ ++N+L L++GE IT I+P  E     ++ Y++ AT HG V++  L  +
Sbjct: 606 LPLASRQARGRPIVNLLPLSEGEHITAILPVREYA---DDKYIIMATSHGTVKKTALKAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   DE++ V+    +NDI+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRDSETGLVKLDPE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 A+R   GR + GVRGI L  G +V+S+ +                         
Sbjct: 723 TNEELVALRPM-GRTATGVRGIRLEDGQKVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                         +   ILTV+E G+GKRTS  ++   +R+ K
Sbjct: 757 ----------------------------PKENGAILTVTENGYGKRTSLEEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V +ND+I+L+SD+GTL+R P   +    R T+GV I   
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRI 846

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
            + E+VV ++RI E    DE E  E
Sbjct: 847 VEGEKVVGLQRIDEI-HEDEVELDE 870



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/435 (13%), Positives = 144/435 (33%), Gaps = 26/435 (5%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLID 435
           L +  +   ++  L   + + + ++ +I+   N         +R+   ++  D+ ++ + 
Sbjct: 474 LAEYEELIDIIAALLYILRSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLI 533

Query: 436 DSSYTIGSDGTMYLSEVQ--TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +    + +   +  ++ Q  T    + R  +     +    + +  L +       +  S
Sbjct: 534 NEEDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFS 593

Query: 494 RSRLLGIIKQELLSVKDELDTPRR------TRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
               L  +K   L +       R           E +  +        +  ++  +  G 
Sbjct: 594 DFGKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITAILPVREYADDKYIIMATSHGT 653

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE--KVWR 605
           VK+  L  Y   R  G     V ++D D +  + I      ++ FS  G V +    V  
Sbjct: 654 VKKTALKAYSNPRANG--IIAVNLKDGDELIGVDITDGKNDIMLFSDAGKVVRFNEMVRD 711

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVFATKHGN 656
              G  +   +    +++L    R  T +                   N  ++  T++G 
Sbjct: 712 SETGLVKLDPETNEELVALRPMGRTATGVRGIRLEDGQKVVSLIVPKENGAILTVTENGY 771

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L ++   +R+ K  + +   +     +      + ++I+L +  G  VR P + +
Sbjct: 772 GKRTSLEEYPAKSRATKGVVSIKVSERNGAVVGAVQVGENDEIMLISDRGTLVRTPATGV 831

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I + +G++V+ +  +     D  E       +  +            
Sbjct: 832 STI-GRNTQGVTIIRIVEGEKVVGLQRIDEIHEDEVELDEEGNPIILEGDDAETGQVIEG 890

Query: 774 SLKNDSSVEGNISEE 788
                         E
Sbjct: 891 EEPKGDDEPEAEPAE 905


>gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 897

 Score =  916 bits (2367), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/926 (43%), Positives = 572/926 (61%), Gaps = 95/926 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H         + I  ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDH--------AQEILPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSV
Sbjct: 53  NELKNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSV 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF PNYDG+   P VL  + PN+L+NG  
Sbjct: 113 DGDSAAAMRYTEIRMAKISHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV+GC+A+ID P++ ++ LME I GPDFPT A I GR GI+ A
Sbjct: 173 GIAVGMATNIPPHNLTEVVNGCIALIDKPELSIEELMEYIPGPDFPTAAFISGRKGIEEA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + IE+    +E I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LR
Sbjct: 233 YRTGRGKIYMRARAEIEREDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALR 292

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+V+E+KR  S +V+LN LY  T +Q++F +NMVAL+  +P+ F L+ ILKA
Sbjct: 293 DESDKDGMRIVVEVKRNESGEVLLNHLYSQTQMQTVFGINMVALDKTQPKVFNLLDILKA 352

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D ++ +I+ S +P  A+  L  +
Sbjct: 353 FVLHRREVVTRRTVFELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQ 412

Query: 421 SWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            W   D+ ++++   + +             DG  YL+E Q +AIL+LRL +LTGL  + 
Sbjct: 413 GWQLGDVSEMLERAGNDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEK 472

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L   I E L IL S  RL+ +I++EL  ++DE    RRT I     D++ ED 
Sbjct: 473 ILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDL 532

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE++VVT+S  GYVK   L+ Y +QRRGGKG+S   M++EDF+  L + +TH  +L F
Sbjct: 533 IEREEVVVTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCF 592

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G +Y  KV++LP+ S  ARG+ ++NIL L + ERIT I+P  E E      YV+ AT
Sbjct: 593 STRGRLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFE---EGKYVLMAT 649

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711
            +G V++  L  + +   +G IA+ L+  DE++ V+     +DI+L +  G+ VRF    
Sbjct: 650 ANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDITDGSSDIMLFSDAGKVVRFNEKA 709

Query: 712 -------------------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
                              A+R   GR + GVRGI L +G +V+S+ +            
Sbjct: 710 RDSETGAVKIDPETGEEILALRPM-GRTATGVRGIRLQEGQRVVSLIV------------ 756

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       +  ILT +E GFGKRT
Sbjct: 757 -----------------------------------------PQGDGAILTATENGFGKRT 775

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              D+   +R+ +G+ +  VS+ N  G +V    VN++D+I+L+SD+GTL+R  V E+  
Sbjct: 776 PVEDYPAKSRATQGVVSIKVSERN--GKVVGAVQVNESDEIMLISDQGTLVRTRVGEVST 833

Query: 873 ASRATKGVVIFSTAKDERVVSVERIR 898
             R T+GV +  T  DE VV ++RI 
Sbjct: 834 VGRNTQGVRLIRTGADEHVVGLQRID 859



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +    +  + +     +   ++L  +E+ +
Sbjct: 480 LLDLIAELLHILGSPERLMEVIREELEKIRDEFGDERRTEITAASHDIDIEDLIEREEVV 539

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  AT + + + I  L      N +D I+  S +G
Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKL---LVANTHDHILCFSTRG 596

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            L  + V ++ +ASR  +G   V I    ++ER+ ++  I+E E 
Sbjct: 597 RLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFEE 641



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/436 (15%), Positives = 139/436 (31%), Gaps = 27/436 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL+   +  H+L      +  + E +  IR     E  RR  +  + + 
Sbjct: 469 EHEKILSEYKELLDLIAELLHILGSPERLMEVIREELEKIRDEFGDE--RRTEITAASHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            DI+DLI+  +            Y  +       + R  +     +    + +  L +  
Sbjct: 527 IDIEDLIEREEVVVTLSREGYVKY--QKLNDYESQRRGGKGKSATKMKEEDFIEKLLVAN 584

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRR------TRIVEGLLDMEDEDCIVREDM 538
                +  S    L  +K   L +       R           E +  +           
Sbjct: 585 THDHILCFSTRGRLYWLKVYQLPLASRNARGRPIVNILPLEENERITAILPIQEFEEGKY 644

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G VK+  L  Y   R  G     +   DE    D+      + ++ FS  G V
Sbjct: 645 VLMATANGTVKKTALVQYSRPRANGIIAVNLNDGDELIGVDI--TDGSSDIMLFSDAGKV 702

Query: 599 YKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLY 647
            +          G+ +   +    IL+L    R  T +                   +  
Sbjct: 703 VRFNEKARDSETGAVKIDPETGEEILALRPMGRTATGVRGIRLQEGQRVVSLIVPQGDGA 762

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           ++ AT++G  +R  + D+   +R+ +  + +       +++      + ++I+L +  G 
Sbjct: 763 ILTATENGFGKRTPVEDYPAKSRATQGVVSIKVSERNGKVVGAVQVNESDEIMLISDQGT 822

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  +  +    GRN+ GVR I     + V+ +  +   +   +E              
Sbjct: 823 LVRTRVGEVSTV-GRNTQGVRLIRTGADEHVVGLQRIDEVEELEEELEALSADDETIEAA 881

Query: 765 ISGDTEEITSLKNDSS 780
            +           +  
Sbjct: 882 ATDVENTTDEDPQNEE 897


>gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A)
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 887

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/900 (44%), Positives = 557/900 (61%), Gaps = 69/900 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSTVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG+ L+N+L L+ GE ITT++P  E        Y+  AT +G V++ 
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYT---EGHYIFMATANGTVKKT 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR 
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G ++ISM I                                        
Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +   ILT S +G+GKRT+  +F    R G+G+ A   +  N  G 
Sbjct: 739 -------------PEEGSQILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRN--GR 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   A DE +V +ER++E 
Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVAEVSSLGRNTQGVTLIKLASDETLVGLERVQEP 843



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 102/261 (39%), Gaps = 15/261 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +       +   +  G VK+ PL  +  QR  G     + + + D +    I      V+
Sbjct: 639 EEYTEGHYIFMATANGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVM 696

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G V + K   +      ARG   +  + L +G+++ +++             ++ 
Sbjct: 697 LFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILT 747

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           A+  G  +R  +S+F +  R G+  + + S D     +         +I+L +  G  VR
Sbjct: 748 ASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLISDQGTLVR 807

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GRN+ GV  I LA  + ++ +  V        E +   + ++ +  L + 
Sbjct: 808 TRVAEVSSL-GRNTQGVTLIKLASDETLVGLERVQEPSEVEGEELEGEEGVAFEGTLGAD 866

Query: 768 DTEEITSLKNDSSVEGNISEE 788
             +       D++ +    ++
Sbjct: 867 VDDVTGDQPLDAAADEEEPQD 887


>gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
 gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel]
          Length = 902

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 455/896 (50%), Positives = 633/896 (70%), Gaps = 7/896 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + NK Y K 
Sbjct: 4   GVLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKA 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGS+DGDPPA+ RYTE R
Sbjct: 64  ARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L +AAHFLL+D+ +DTVDFRPNYD + +EPV+L A +PN+LVNG GG+AVGM+TNIP+HN
Sbjct: 124 LSEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD CVA I+ P+I LD LM II GPDFPTG VI+G  GI++A+A+GRG+IV+RG +
Sbjct: 184 LGEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIMGDAGIRSAFASGRGTIVVRGRT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+    R+ I++ EIPYQVNKA ++E+I ELV+EK+I  +ADLRDES++ G RV IEL
Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR   + V+LNQL   T L++ FS+N + L   KP   +L  I+  FV FR+EV+VRRT+
Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNKPRVMSLPEIIATFVDFRKEVIVRRTR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLIDL 433
           + L K R++AH+ +G+ IAV N+DEVV II+ S +   A   L +R W  ++DI+++I+L
Sbjct: 364 FRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIEL 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + D S  +   G   L+  Q +AILE+RL RLTGL ++ +  EL S+   I E   ILS+
Sbjct: 424 VSD-STGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILST 482

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S L+ I+KQ LL  K +L  PR T I + + +++ E  I +E+MVVTV+  G+VKRV L
Sbjct: 483 DSLLMDIVKQGLLDAKAKLAKPRNTAIEQSVDEIDAESLIPKEEMVVTVTMNGFVKRVKL 542

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P +
Sbjct: 543 SNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEPSS 602

Query: 614 RGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           RG++L+NI  L+ GE IT++MP    +DE    NL VVFAT  GN+RRN LSDF  +  S
Sbjct: 603 RGRSLVNIFPLSDGETITSVMPLPSCDDEVGIANLDVVFATASGNIRRNALSDFQYVPSS 662

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAM L   D+++S   C   + +LL+++LG+ +RF +S +R F GR S GVR I L+ 
Sbjct: 663 GKIAMVLTPGDQLISAHVCGYADHVLLSSRLGKSIRFAVSNVRQFRGRTSDGVRAIRLSA 722

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GDQVISM+++   +A  + +  Y+K +  + R+ +  +  ++        E  I  E+  
Sbjct: 723 GDQVISMSVLHGIEASSELKESYLK-IPVEARVAASHSGVVSDEVAPMLEEHAIEREQFL 781

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   EQFILTV+E GFGKRTS+Y++RI++R G G+     +  N  G +VA FPV+  D
Sbjct: 782 EMACSEQFILTVTENGFGKRTSAYEYRITSRGGVGVVNILTTVRN--GNVVASFPVSQTD 839

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           Q++L++DKG LIR+ V +IR+  R+T+GV +F T K E+VVSV  + +    ++ E
Sbjct: 840 QVMLITDKGKLIRIAVTDIRVVGRSTQGVTLFKTEKGEKVVSVATVVDGSKEEDEE 895


>gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10]
 gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10]
          Length = 946

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 514/903 (56%), Positives = 660/903 (73%), Gaps = 7/903 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++          GI +++I DEM++SYL YA++VI+ RAIPD RDGLKPVHRRIL+ M 
Sbjct: 19  ADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTMH 78

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G    K Y KCA   G+VMG+YHPHG+ A+YD+L R+AQDWS+R+ LI+GQGNFGSVD
Sbjct: 79  ENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSVD 138

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPAA RYTE R+QK A  LL D+ KDTV+F  NY    QEPVVL ARYPN+LVNG GG
Sbjct: 139 GDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAGG 198

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+P HNLGEV+DG +A+++NP +    L++ I GPDFPTG +ILGRTG +NA 
Sbjct: 199 IAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLILGRTGARNAV 258

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSIV+R  + IE+   DR  I+V EIPYQVNKA+M+EKIA+LVR+K+I  IADLRD
Sbjct: 259 LTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADLRD 318

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G RVVIELKR A+ADVILNQL+R++ +Q+ F  NM++L G +P+    + ILK F
Sbjct: 319 ESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLVGGRPQLLGALDILKEF 378

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FREEVV RR K+ LNKARDRAHV++GLA+AVAN+DEV+ +IR +PNP TAR +LM R 
Sbjct: 379 LRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLMARD 438

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           W A D+  L++L+ D    +  D T+ L+E Q RAILELRL RLTGLGR+++ NE  +L 
Sbjct: 439 WPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAKTLA 498

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LD+L SR R+L II+ EL  V++   TPRR+  V+  LD EDED I R++MVVT
Sbjct: 499 DQIADLLDLLRSRQRVLDIIRDELTEVRENYATPRRSEFVDAELDFEDEDLIPRDEMVVT 558

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+H GY KR  LS YRAQRRGGKGRSG+  +DEDF+  LF+ STH  +LFFS+ G VYK 
Sbjct: 559 VTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLLFFSNRGMVYKT 618

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K WRLP+G+P  RGKALIN+L L QGE IT+IM  PEDES+W ++ V+FAT  G VRRNK
Sbjct: 619 KTWRLPLGAPNTRGKALINLLPLEQGETITSIMALPEDESTWADMNVMFATNKGTVRRNK 678

Query: 662 LSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           LSDF+Q+NR+GKIAMKL +  D+I++V  CT+++D+ LTT  G+ +RFP + +RVFAGRN
Sbjct: 679 LSDFVQVNRNGKIAMKLEEEDDQIVNVVLCTEQDDVFLTTHKGRAIRFPATDVRVFAGRN 738

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI---TSLKN 777
           SVGVRGI LA+GD++ISMAI+ H D    E   YMKH +A RR +  D E     T    
Sbjct: 739 SVGVRGIRLAEGDELISMAILHHIDVTSPEARAYMKHATAMRRALGDDEEIETVNTDGDE 798

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D   E  +S ER  EL   E+F+LTV+  G GKR+S+YDFR+  R   G+ ATD+     
Sbjct: 799 DGDDEAALSTERLAELGAAEEFLLTVASDGMGKRSSAYDFRVMGRGNNGVAATDIK---R 855

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              L A FPV D DQI+ V+D G LIR PV+ +RIASR+++GV +    + E VV+V RI
Sbjct: 856 DIPLSASFPVEDADQIMAVTDGGQLIRFPVDTVRIASRSSRGVRLIRLNEGENVVAVVRI 915

Query: 898 RES 900
           +++
Sbjct: 916 QDA 918



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 5/240 (2%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +D V   +H G   R P +  R     G+   GV         +L  ++    +   S 
Sbjct: 710 EQDDVFLTTHKGRAIRFPATDVRV--FAGRNSVGVRGIRLAEGDELISMAILHHIDVTSP 767

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
               Y +    +            +N      G+    +      E      +++     
Sbjct: 768 EARAYMKHATAMRRALGDDEEIETVNTDGDEDGDDEAALSTERLAELGAAEEFLLTVASD 827

Query: 655 GNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISA 712
           G  +R+   DF  +   +  +A     RD  LS     ++ + I+  T  GQ +RFP+  
Sbjct: 828 GMGKRSSAYDFRVMGRGNNGVAATDIKRDIPLSASFPVEDADQIMAVTDGGQLIRFPVDT 887

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R  A R+S GVR I L +G+ V+++  +  A  + DE         A     +GD+   
Sbjct: 888 VR-IASRSSRGVRLIRLNEGENVVAVVRIQDAGDEGDEDGDGETVTDAGPAPEAGDSPSE 946


>gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
 gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1]
          Length = 875

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
 gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2]
          Length = 879

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/901 (43%), Positives = 558/901 (61%), Gaps = 70/901 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   EQFAKETLPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYDGS  EP+V  AR+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+D C+A++ NP++D++ L+E +  PDFPT   I G  G+K  Y TGRG ++
Sbjct: 182 IPPHNMTEVIDACLALLKNPEMDIEELIEYVPAPDFPTAGFIYGLAGVKEGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E      R+ I++ E+PYQVNKA +L KI E+VREKR+  I+++RDESD+ G 
Sbjct: 242 MRARCHFEDIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R VIELKRG +ADV+LN+LY+ T +Q  F +NMVA+   +P    L  ++ AF+  R EV
Sbjct: 302 RAVIELKRGENADVLLNKLYKDTQMQDSFGINMVAIVDGQPRLLNLKQVMDAFLRHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A++N+DE++ +I+ +P P  A+RELM +SW +  ++
Sbjct: 362 VTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVE 421

Query: 429 DLIDLIDDSSYT-----------IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           D++  + D+S               +    +LS+ Q +AILELRL RLTG+ +D I  E 
Sbjct: 422 DMLSRVSDASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEY 481

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I + LDIL+   R+  II  EL++VK +    RR+ IV    DM  ED I  ED
Sbjct: 482 REVMDKIADLLDILAKPERVTAIIGDELVAVKTQFGDKRRSEIVTHTHDMSMEDLIPPED 541

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GY+K   +  Y+AQ+RGG+GR     +D+DF+ +LF+ +TH  +L FS+ G 
Sbjct: 542 VVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKGR 601

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  KV+ +P GS  ARGK ++N+L L +GE+I  I+P  E      + YV FAT +G V
Sbjct: 602 VYWMKVYDVPQGSSGARGKPIVNLLPLEEGEKINAILPVTEFA---EDKYVFFATANGTV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+DF +  + G IA+ LD  D ++ V      +D++L +  G+ VRF  + +R   
Sbjct: 659 KKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVRE-T 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR S GVRG+ L +  QVISM +  +                                  
Sbjct: 718 GRASRGVRGMKLHENQQVISMLVAEN---------------------------------- 743

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                             ++Q +LT +E G+GKRT   ++    R  +G+ A   S+ N 
Sbjct: 744 ------------------EQQSVLTATENGYGKRTPVGEYTRHGRGTQGMIAIQTSERN- 784

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   VN  D+I+++   G LIR  V EIR   R T+GV + +  K ER+  + RI
Sbjct: 785 -GKVVAATLVNPEDEIMMIGTNGVLIRTRVREIREMGRTTQGVTLMNLEKGERLAGLSRI 843

Query: 898 R 898
            
Sbjct: 844 A 844



 Score = 84.5 bits (207), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 110/248 (44%), Gaps = 14/248 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R   +G   + + ++D++  + I   H  V+ F
Sbjct: 643 FAEDKYVFFATANGTVKKTTLTDF--SRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G   +     +      +RG   +  + L++ +++ +++             V+ AT
Sbjct: 701 SNSGKAVRFDEADVRETGRASRG---VRGMKLHENQQVISMLVAEN-----EQQSVLTAT 752

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++      E++I++    G  +R  
Sbjct: 753 ENGYGKRTPVGEYTRHGRGTQGMIAIQTSERNGKVVAATLVNPEDEIMMIGTNGVLIRTR 812

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  IR   GR + GV  ++L KG+++  ++ +  +D +  E +     +     +I G  
Sbjct: 813 VREIREM-GRTTQGVTLMNLEKGERLAGLSRIAESDEEELEELDSGSGIEDSGNVIDGQE 871

Query: 770 EEITSLKN 777
           E+ +  ++
Sbjct: 872 EQESGTED 879


>gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
 gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342]
          Length = 823

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L]
 gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus E33L]
          Length = 823

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1]
 gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42]
 gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1]
          Length = 823

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99]
 gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99]
          Length = 907

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/925 (43%), Positives = 561/925 (60%), Gaps = 88/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYDG+   P V+  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+ GC+A+I+ P + ++ LME I GPDFPT A+I GR GI  AY TGRG  ++R  
Sbjct: 186 NITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAIINGRKGIIEAYKTGRGRAIMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + ++     RE+I+V E+PYQVNKA ++EKIAELV++K+I  I  LRDESD+ G R+VIE
Sbjct: 246 ADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ S  P  A+ +L+ + W    +K +++ 
Sbjct: 366 VFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             D   YL+E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RLL +IK+EL  + +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILHSPERLLEVIKEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PL+ Y+AQRRGGKG+    ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S QARG+ ++N+L L++GE IT I+P  +     ++ YV+ AT HG V++  L  +
Sbjct: 606 LPLASRQARGRPIVNLLPLSEGEHITAILPVRDYA---DDKYVIMATSHGTVKKTALKAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+    ++DI+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 A+R   GR + GVRGI L  G +V+S+ +                         
Sbjct: 723 TNEELVALRPM-GRTATGVRGIRLEDGQKVVSLIV------------------------- 756

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  ILT++E G+GKRT+  ++   +R+ K
Sbjct: 757 ----------------------------PKADGAILTITENGYGKRTALDEYPAKSRATK 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  GA+V    V +ND+I+L+SD+GTL+R P   +    R T+GV I  T
Sbjct: 789 GVVSIKVSERN--GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTIGRNTQGVTIIRT 846

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
           A+ E+VV ++RI E    DE E  E
Sbjct: 847 AEGEKVVGLQRIDEI-HEDEVELDE 870



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 57/459 (12%), Positives = 147/459 (32%), Gaps = 28/459 (6%)

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +            +      +   +    + +L +  +   ++  L   + + + ++ +I
Sbjct: 444 DDRYYLTEQQAQAILDLRLHKLTGLEH--EKILAEYEELIEIIAALLYILHSPERLLEVI 501

Query: 405 RFSPNPETARRELMQRSWNASDIKDL-IDLIDDSSYTIGSDGTMYLSEVQ--TRAILELR 461
           +   N         +R+   ++  D+ ++ + +    + +   +  ++ Q  T    + R
Sbjct: 502 KEELNEILENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHLGYAKYQPLTDYQAQRR 561

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR---- 517
             +     +    + +  L +       +  S    L  +K   L +       R     
Sbjct: 562 GGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDFGKLYWLKVYQLPLASRQARGRPIVNL 621

Query: 518 --TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
                 E +  +        +  V+  +  G VK+  L  Y   R  G     V ++D D
Sbjct: 622 LPLSEGEHITAILPVRDYADDKYVIMATSHGTVKKTALKAYSNPRANG--IIAVNLKDGD 679

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYK-----------EKVWRLPIGSPQARGKALINILSL 624
            +  + I    + ++ FS  G V +                          + +    + 
Sbjct: 680 QLIGVDITDGKSDIMLFSDAGKVVRFNEMVRDSETGLVKLDAETNEELVALRPMGRTATG 739

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            +G R+              +  ++  T++G  +R  L ++   +R+ K  + +   +  
Sbjct: 740 VRGIRLEDGQKVVSLIVPKADGAILTITENGYGKRTALDEYPAKSRATKGVVSIKVSERN 799

Query: 685 ---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
              +      + ++I+L +  G  VR P + +    GRN+ GV  I  A+G++V+ +  +
Sbjct: 800 GAVVGAVQVGENDEIMLISDRGTLVRTPATGVSTI-GRNTQGVTIIRTAEGEKVVGLQRI 858

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                D  E       +  +   +               
Sbjct: 859 DEIHEDEVELDEEGNPIIQEGDNVEAGQVAEGEEPKGDD 897


>gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
 gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655]
          Length = 866

 Score =  916 bits (2366), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 552/906 (60%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLYLLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                   ++ +  DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLMRAETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL  VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVREFS---ADKYVFMT 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFSRPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L    QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLDDAQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           RE
Sbjct: 647 RE 648


>gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01]
 gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03]
 gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07]
 gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22]
 gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26]
 gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32]
 gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12]
          Length = 921

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/905 (51%), Positives = 630/905 (69%), Gaps = 12/905 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE        E   +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  ++K Y K AR  GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  EV+D  +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +ATGRG+++IR  + IE+   DR+ I+VTEIPYQVNKA + E+IA+LVR K+I  IAD+R
Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP    L  +L+A
Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            WNA+D++ L+ LI D    +  DG + L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 421 QWNAADVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I+ S  R + +++ EL   + E+ TPR T I +   D +DE  I    MVV
Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+G   R +D V   F   TH  V+FFSS G VY+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KVWRLP   P A+G+AL+N+L     + IT ++P P+DE  W  L++VFAT  GNVRRN
Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE------- 771
           R S GVRGI LA+GD+VIS+A++ H +A  +ER  Y++  +A+RR  +            
Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDADTV 779

Query: 772 --ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
              +  +  S+ +  +S ER  +L+  E+ +L VS+ GFG+R+S+YD+R+S R G+GI  
Sbjct: 780 QVDSDEEEGSNTDALLSPERFAQLEEAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITN 839

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S       + A  PV +   ++LV+D G LIRVPV+++R+ +R   GV +F    DE
Sbjct: 840 MTFSANKRGKEVAATLPVLEGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDE 899

Query: 890 RVVSV 894
           RV SV
Sbjct: 900 RVTSV 904


>gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 899

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/935 (44%), Positives = 575/935 (61%), Gaps = 98/935 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   GILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K +H LL DL K+TVDF PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A+I NP++ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  +
Sbjct: 187 LTEVVNGCLALIQNPELSILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 247 EIEVDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 307 IKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR SP P  A+  L  RSW   ++K ++D 
Sbjct: 367 VFDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLDK 426

Query: 434 IDDS---------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             +          +     DG  ++SE Q +AIL+LRL +LTGL  + I  E  SL   I
Sbjct: 427 AGEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL++  RL+ +I+ EL+ +K +    RRT I     D+  ED I  E++VVT+SH
Sbjct: 487 AELLHILATPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 547 EGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L   ERIT I+P  E      + Y+  AT  G V++  L+ 
Sbjct: 607 QLPLASRAARGKPIVNLLPLEADERITAILPVREYA---EDKYIFMATAFGTVKKTPLTA 663

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------ 712
           + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +             
Sbjct: 664 YSRQRASGIIAVNLNEGDSLIGVDVTDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNPV 723

Query: 713 -------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                        +R   GR + GVRGI + +G +V+S+ +                   
Sbjct: 724 LDEEGNPEIRFKGVRPM-GRTATGVRGIKMPEGQRVVSLIV------------------- 763

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                +  ILTV+E G+GKRT   D+  
Sbjct: 764 ----------------------------------PKTDGAILTVTENGYGKRTLLEDYPA 789

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T+G
Sbjct: 790 KSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQG 847

Query: 880 VVIFSTAKDERVVSVERIRESEIVD----EAESTE 910
           V++  T  +E+VV ++RI E E+ +    + E  E
Sbjct: 848 VILIRTIDEEQVVGLQRIEEIEVTESDLIDIEDVE 882



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 93/262 (35%), Gaps = 22/262 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PL+ Y  QR  G     V + + D +  + +      ++ F
Sbjct: 641 YAEDKYIFMATAFGTVKKTPLTAYSRQRASG--IIAVNLNEGDSLIGVDVTDGSNEIMLF 698

Query: 593 SSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPF 636
           +  G V + K                   G+P+ R K    +    +  +G ++      
Sbjct: 699 TDAGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMPEGQRV 758

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693
                   +  ++  T++G  +R  L D+   +R+ +  + +   +     +        
Sbjct: 759 VSLIVPKTDGAILTVTENGYGKRTLLEDYPAKSRATQGVVSIKVSERNGAVVGAVQVDDN 818

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I++ +  G  VR  ++ +    GRN+ GV  I     +QV+ +  +   +    + I 
Sbjct: 819 DEIMIISNRGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLID 877

Query: 754 YMKHMSAQRRLISGDTEEITSL 775
                +    +     +   S 
Sbjct: 878 IEDVETVDTVIDEVADDNPPSE 899


>gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 887

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/900 (45%), Positives = 560/900 (62%), Gaps = 69/900 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G ++NK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W ++ + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S  RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSAVRLMEVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG+ L+N+L L+ GE ITT++P  E        Y+  AT +G V++ 
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLDDGEYITTMLPVEEYT---EGHYIFMATANGTVKKT 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F +    G IA++LD  D ++S      E +++L +  G+  RF  S +R   GR 
Sbjct: 660 PLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSDGGKVTRFKESDVRAM-GRT 718

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L +G ++ISM I                                        
Sbjct: 719 ARGVRGMRLPEGQKLISMLI---------------------------------------- 738

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +   ILT SE+G+GKRT+  +F    R G+G+ A   ++ N  G 
Sbjct: 739 -------------PEEGSQILTASERGYGKRTAITEFPEYKRGGQGVIAMVSNERN--GR 783

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V D ++I+L+SD+GTL+R  V+E+    R T+GV +   AKDE +V +ER++E 
Sbjct: 784 LVGAVQVLDGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLAKDETLVGLERVQEP 843



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 103/261 (39%), Gaps = 15/261 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +       +   +  G VK+ PL  +  QR  G     + + + D +    I      V+
Sbjct: 639 EEYTEGHYIFMATANGTVKKTPLESFSRQRSVG--LIALELDEGDVLISAAITDGEREVM 696

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G V + K   +      ARG   +  + L +G+++ +++             ++ 
Sbjct: 697 LFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILT 747

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           A++ G  +R  +++F +  R G+  + + S +     +         +I+L +  G  VR
Sbjct: 748 ASERGYGKRTAITEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVR 807

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +    GRN+ GV  I LAK + ++ +  V        E +   + +  +  +I  
Sbjct: 808 TRVDEVSSL-GRNTQGVTLIKLAKDETLVGLERVQEPSEVEGEELEGEEGVELEDGVIGA 866

Query: 768 DTEEITSLKNDSSVEGNISEE 788
           + ++        + +   S++
Sbjct: 867 EPDDAVDNLQADAADEEESQD 887


>gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5]
 gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5]
 gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1]
 gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1]
 gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1]
 gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1]
 gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7]
 gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1]
 gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3]
          Length = 875

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 577/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
 gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP]
          Length = 900

 Score =  915 bits (2365), Expect = 0.0,   Method: Composition-based stats.
 Identities = 419/907 (46%), Positives = 582/907 (64%), Gaps = 33/907 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +    +NK 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N  + ++ LM  I GPDFPTGA+I GR GI++AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAIINGRKGIEDAYCTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +EKT  +REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   E AR  L+ R+W+  ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             +G  +LSE Q RAILELRL RLTGL  + I +E   L  
Sbjct: 423 LEAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L IL+S  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILNSAERLMQVIREELEKVKAEFGDERRTEITAASGDINLEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L + +TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL--NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           V++LP  S  ARG  ++NIL L   + ERIT I+P P+ E S  + ++  AT  G V++ 
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPKGEFST-DKFIFMATASGIVKKV 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  F  I  SG I +KL   DE++ V+     ++I+L +  G+ VRF   A+R   GR 
Sbjct: 662 CLDAFSHIRSSGLITLKLREGDELIGVDITDGGSEIMLFSAQGRVVRFAEKAVRSM-GRT 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D +                      +     +     E   +   + +
Sbjct: 721 ATGVRGIKLATSDILAD-------------------DIEDTEIVEIEQEETEDNTAVNLN 761

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           ++  +S    +        ILTV+E G+GKRT   ++ I +R+ KG+ +  V++ N  G 
Sbjct: 762 IDRVVSLVIPRADIATSGDILTVTENGYGKRTVLTEYPIKSRATKGVLSIKVNERN--GK 819

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +VA   V++ DQI+L++D GTL+R  V E+ +  R T+GV I  TA+DE+VVS+ER+ E 
Sbjct: 820 VVAAVQVDELDQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTAEDEKVVSLERLCEP 879

Query: 901 EIVDEAE 907
           E  +  E
Sbjct: 880 EEDESNE 886


>gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1]
          Length = 846

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/905 (42%), Positives = 542/905 (59%), Gaps = 69/905 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL D+ K+TVDF PNYDGS  EP+++ AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIAHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+A++ NP+  +D L+EII  PDFPT  +I G  G+K AY TGRG +V
Sbjct: 182 IPPHNLNEVVDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTMGVKEAYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG +H+E       + +++ E+PYQVNK +++EKIAELV EK+I  I+DLRDESD+ G 
Sbjct: 242 MRGRTHVEDMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +VILN LY+ T LQ  F +NMVAL   +P    L  +L+AF   R EV
Sbjct: 302 RVVIELKRGEVPEVILNNLYKQTQLQDTFGMNMVALLDGQPRLLNLKQMLEAFFGHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KA  R HVL GLA+A+AN+DE++ +I+ +P P  A++ LM R+W +  ++
Sbjct: 362 ITRRTVFELGKAE-RGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVE 420

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++      +            +     LS+VQ + IL++RL RLTGL +D I NE   +
Sbjct: 421 EMLKRAAMEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEV 480

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I + LDIL+   R+  +I  EL +++ +     R+ IV    D+  ED I  +D+VV
Sbjct: 481 MDVIADLLDILAKPERVTQMIVDELATIRQQFGDSCRSEIVHNAQDLSLEDLITPQDVVV 540

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PL  YRAQRRGG+G+     +++DF+  +F+ +TH  +L FSS G VY 
Sbjct: 541 TLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVYW 600

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K  +    +  A  +A    L   +G      +P  E +    N ++  AT  G V++ 
Sbjct: 601 LKYTKCRKAAASA-VQAYRQPLPAGRGREDQCHLPVKEFD---ENHFIFMATAQGTVKKT 656

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F    R+G IA+ LD  D ++  E     NDI+L +  G+ V F    +R   GRN
Sbjct: 657 ALVEFSNPRRAGIIAINLDEGDYLIGAEVTNGANDIVLVSNGGKAVWFDEEDVRAM-GRN 715

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L    +VIS+ I                                        
Sbjct: 716 TRGVRGMKLMPKQRVISLLIAEDDK----------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +L  +E G+GKRT   DFR S R  +G++A   S  N  G+
Sbjct: 741 -----------------QTVLVATENGYGKRTVLSDFRHSGRGTQGVKAIATSDRN--GS 781

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    VND D+I+L++  G LIR  V EIR   RAT+GV + +  ++E++  +E++ E+
Sbjct: 782 VVGARLVNDEDEIMLITTGGVLIRTRVKEIRELGRATQGVTLINLGENEKLSGLEKVVET 841

Query: 901 EIVDE 905
           +  DE
Sbjct: 842 DDADE 846


>gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
 gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579]
          Length = 824

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/896 (42%), Positives = 553/896 (61%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+
Sbjct: 1   MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR
Sbjct: 241 GSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  +
Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R     
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q +AIL++RL RLTGL R+ I  E   L   I 
Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544
           E   IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H
Sbjct: 455 ELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS 
Sbjct: 575 EIPEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGVSKRTPLSS 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV
Sbjct: 632 FANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L   DQV+ M IV                                           
Sbjct: 691 KAITLGDEDQVVGMEIVEEDVN-------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV
Sbjct: 713 ---------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V   + I+L++  G +IR+PV++I    R T+GV +    +D+ V +V + ++ 
Sbjct: 756 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 811


>gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
 gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256]
          Length = 924

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/921 (40%), Positives = 552/921 (59%), Gaps = 28/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDHLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E    +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V EIR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGKLIRTKVEEIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E +VS+ER+ E    +  E  
Sbjct: 885 ETLVSLERVAEEAEDENPEVE 905



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 110/277 (39%), Gaps = 40/277 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D +      S    ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDHLVGAAQTSGSDDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S +  +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E++ ++L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G+ +R  +  IR   GR + GVR I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGKLIRTKVEEIRE-TGRAAAGVRLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +S+  V     D +  +   +   A+  +   +  E 
Sbjct: 888 VSLERVAEEAEDENPEVENPEGNEAENAVSDTEGGEA 924


>gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 900

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 461/893 (51%), Positives = 630/893 (70%), Gaps = 5/893 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGSVDGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RLQ  +HFLL+D+ ++TVDFRPNYDG+  EPVVL A +PN+LVNG  G+AVGMATNIP 
Sbjct: 122 ARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D CV  IDN ++ LD L++++ GPDFPTG  ILGR+GI++A+ATGRGSIVI+G
Sbjct: 182 HNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTILGRSGIRSAFATGRGSIVIQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+E++I  I ++RDESD+ G RVVI
Sbjct: 242 KTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRVVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L++ A+AD ILNQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RR
Sbjct: 302 DLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNRPVLMSLKEIIVAFVDFRKEVLIRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R++AH+ +GL IAV ++DEV++I+R + +PE A ++L+ + W  S   + I 
Sbjct: 362 TEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEINTII 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            +   S +   DG   L+E+QT+AIL+++L RLTGL RD +  ELNS+   +KE +  L 
Sbjct: 422 GLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIAFLG 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L+  IK  L  V++    PR+T I E   D+E ED I +EDMVVTV+  GY+KRV 
Sbjct: 482 SEEKLMKEIKNNLQEVRNRFAVPRKTVIEESDADIEVEDLIPQEDMVVTVTMNGYIKRVK 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YR QRRGGKG+ G  +++ED +T LF+ +THTS+LFFS++G VY+ KV++LP+  P 
Sbjct: 542 LSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRLKVYKLPLAEPT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG+AL+NI  L  GE IT IMP P +     N  +VFAT HGN+RRN L+DF  I  +G
Sbjct: 602 ARGRALVNIFPLADGETITNIMPLPSESDESQN--IVFATAHGNIRRNSLADFHYIPSNG 659

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIA+KLD  D+++SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI LAK 
Sbjct: 660 KIAIKLDEGDKLVSVKVCNETDHVLLSTMLGKSIRFIVSDVRQFKSRNSDGVRGIKLAKN 719

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM I+       + +  Y+K   A+R L +     I S       +  I  +   +
Sbjct: 720 DSVISMTILNGIGVTTETKELYLKVPLAKR-LETAVNNSIDSKLEKVLNDLGIDNKLFLK 778

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E+FILT++E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV  +D 
Sbjct: 779 LAANEEFILTITENGFGKRTSAYEYRVTNRGGIGITNILTTNRN--GNVVASFPVEQDDN 836

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I+L++DKG LIR+ VN IRIA R+T+GV +F T   E+VVS  +I +    +E
Sbjct: 837 IMLITDKGKLIRISVNGIRIAGRSTQGVTLFKTESREKVVSAAKIEDPGSTEE 889



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 65/164 (39%), Gaps = 4/164 (2%)

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           KE   ++P+               L +      I      + + N  +++  T++G  +R
Sbjct: 738 KELYLKVPLAKRLETAVNNSIDSKLEKVLNDLGIDNKLFLKLAANEEFILTITENGFGKR 797

Query: 660 NKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
               ++   NR G      +  +    +++     Q+++I+L T  G+ +R  ++ IR  
Sbjct: 798 TSAYEYRVTNRGGIGITNILTTNRNGNVVASFPVEQDDNIMLITDKGKLIRISVNGIR-I 856

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           AGR++ GV        ++V+S A +    +  +         S+
Sbjct: 857 AGRSTQGVTLFKTESREKVVSAAKIEDPGSTEENMPEIGDSASS 900


>gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
 gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92]
          Length = 866

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/908 (44%), Positives = 557/908 (61%), Gaps = 70/908 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK Y K
Sbjct: 6   KEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKISHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+N D+ +D LME I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NLSEVVRGCIALIENSDLSVDDLMEFIPGPDFPTGGIINGRAGILQAYRTGRGRIYVRAK 245

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H+E+     +  +++TEIPYQ+NKA ++EKIAELV++K+I  I +LRDESD+ G R+VI
Sbjct: 246 HHVEEDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   DV++N L+  T ++S+F +NMVAL   +P+   L   L+ F+  R EVV RR
Sbjct: 306 ELRRGEMPDVVINNLFAQTQMESVFGINMVALVDGQPKILDLKTALECFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLA+A+AN+D V+ +I+ SP P  A+  L+  +W   D+  +++
Sbjct: 366 TVYLLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQMLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              + +             +G   LS  Q +AILELRL RLTGL  + +  E   L   I
Sbjct: 426 RAGEDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLERI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL ++ +E    RRT I     D+   D I  EDMVVT+SH
Sbjct: 486 AELLKILGSHERLMEVIREELEAILEEYGDERRTEITASRKDLTVADLITEEDMVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y++QRRGGKG+S   ++DEDF+  L I +TH ++L F+  G VY  +V+
Sbjct: 546 GGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVYWLRVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ S  ARG+ ++NIL L++GERI+TI+P    E    + ++  AT  G V++  L++
Sbjct: 606 EIPVASRTARGRPIVNILPLDEGERISTILPVGGYE---EDKFIFMATASGTVKKTALTN 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA+ L   D ++       E+D++L T  G+ +RF    +R   GR + GV
Sbjct: 663 FSRPRASGLIALDLLDDDHLIGAAITNGEDDVMLMTSAGKSMRFREEDVRPM-GRTARGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ +  G +VIS+ I                                            
Sbjct: 722 RGVKMDDGVKVISLIIPQEGGK-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT SE G+GK+T+  DF +  R G+G+ A   S  N  G+L   
Sbjct: 744 ---------------ILTASENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRN--GSLAGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D ++L+SD+GTL+R   +EI    R T+GV +   A DER+VSV RI E E  +
Sbjct: 787 VQVFDGDDVMLISDQGTLVRTGGDEISELGRNTQGVTLIRVADDERLVSVARIEEPEEDE 846

Query: 905 --EAESTE 910
             + E +E
Sbjct: 847 LLQGEESE 854



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 83/239 (34%), Gaps = 15/239 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+  L+ +   R  G     ++  D      +   +    V+  
Sbjct: 640 YEEDKFIFMATASGTVKKTALTNFSRPRASGLIALDLLDDDHLIGAAI--TNGEDDVMLM 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +S G   + +   +      ARG   +         ++   +             ++ A+
Sbjct: 698 TSAGKSMRFREEDVRPMGRTARGVRGV---------KMDDGVKVISLIIPQEGGKILTAS 748

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  ++  + DF    R G+  +     D              +D++L +  G  VR  
Sbjct: 749 ENGYGKKTAVDDFPVKGRGGQGVIAQQCSDRNGSLAGAVQVFDGDDVMLISDQGTLVRTG 808

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              I    GRN+ GV  I +A  ++++S+A +   + D   +    +     +   + +
Sbjct: 809 GDEISEL-GRNTQGVTLIRVADDERLVSVARIEEPEEDELLQGEESEQQGEAQAEPAEE 866


>gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1]
          Length = 919

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDELLDEADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G+RI +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + ++      +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  +     D  + +        +            +
Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVEAEAPDEAAGAEEA 916

Query: 775 LKN 777
            + 
Sbjct: 917 PQE 919


>gi|118578454|ref|YP_899704.1| DNA gyrase, A subunit [Pelobacter propionicus DSM 2379]
 gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379]
          Length = 843

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/898 (42%), Positives = 564/898 (62%), Gaps = 61/898 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +   +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  M  +WNK Y K
Sbjct: 6   QNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A YD + RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL++ +H LL DL K+TV   PNY+    EP VL +++PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DG +AVI+NPD+  + L+ +I GPDFPTGA I GR GI++AY TGRG I IR  
Sbjct: 186 NLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGATIYGRQGIRDAYTTGRGIIQIRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +HIE     +R+ I+VTE+PYQVNKA ++EKIAELV+EK+I  IA++RDESDR+G R+V+
Sbjct: 246 AHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR  + +V+LN LY+ T +Q+ F + ++A+   +P   +L  ++  F+  R EVV RR
Sbjct: 306 EVKRDDNPEVLLNLLYKLTQMQTSFGIILLAIVHNRPRILSLREMIDCFIEHRAEVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA  RAH+L GL IA+  LD V+ +IR S  P  A++ LM+ ++  ++    ++
Sbjct: 366 TNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLARLE 425

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L       +G D  ++LSE+Q +AILE+RL RLTGL RD I +E   +   I    +IL+
Sbjct: 426 L----PRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILA 481

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +  II  EL  ++D+    RR+ I +   D+  ED I+ E+MVVT+SH GY+KR  
Sbjct: 482 SDREIFNIIISELTEIRDKFGDIRRSEISDTTPDISLEDTIMDEEMVVTISHTGYIKRSA 541

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + +YR+QRRGGKG++G+  R+EDFV  LFI ST   +L F+  G +Y  KV+ +P G+  
Sbjct: 542 VDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLKVYEIPEGNRT 601

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GKA++N++++   E+ITTI+P  E        ++  AT++G V++  L ++  +   G
Sbjct: 602 TKGKAVVNLVNVGMEEKITTILPVKEFSEH---TFLFMATRNGVVKKTPLIEYSNVRSGG 658

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  D+++ V       D+ L ++ G+ +RF    +R   GR + GVRG++L + 
Sbjct: 659 IIAVNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSM-GRVTRGVRGMNLNED 717

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI M IV +                                                 
Sbjct: 718 DHVIGMEIVHNDVV---------------------------------------------- 731

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I TV E G+GKRT   ++R  +R GKGI     +  N  G++V V  V++++ 
Sbjct: 732 ----GSTIFTVCENGYGKRTDLDEYRDQSRGGKGIITIKTNARN--GSVVNVMQVSNDND 785

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++D G ++RVPV+   +  R T+GV + +T + E+VV+V R+ E E  DE E TE
Sbjct: 786 LMVITDNGKILRVPVSGFSVIGRNTQGVRLITTEEKEKVVAVARLAEKEEDDENEGTE 843


>gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803]
 gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803]
          Length = 823

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 554/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VKD  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKDRFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
 gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas
           tunicata D2]
          Length = 899

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/923 (43%), Positives = 565/923 (61%), Gaps = 93/923 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK
Sbjct: 2   TDRANEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + +H LL DL K+TVD+  NYDG+ + P VL  + PN+LVNG  GIAVGMATN
Sbjct: 122 YTEIRMARVSHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A+I+NPDI +D L++ I GPDFPT A+I G+ GI+ AY TGRG + 
Sbjct: 182 IPPHNLNEVINGCLALINNPDITIDELIDYIPGPDFPTAAIISGKKGIEQAYKTGRGKVY 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + +E     +E I+V E+PYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R
Sbjct: 242 IRAKAEVETDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+KRG   +V+LN LY  TS+Q++F +NMVAL+  +P+   L  +L AFV  R EVV
Sbjct: 302 IVVEIKRGEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQPKLLNLKEMLHAFVVHRREVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L+ R W+   ++ 
Sbjct: 362 TRRTVFDLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQS 421

Query: 430 LIDLIDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++   +          +     DG  +LS  Q +AILELRL RLTGL  + I  E   L
Sbjct: 422 MLERTGESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQEL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L ILSS  RLL +I+ EL   K++    RRT I     D+  ED I  ED+VV
Sbjct: 482 LDLIAELLHILSSPERLLEVIRDELALAKEQYGDERRTVITAAAHDISLEDLINEEDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GYVK  PLS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y 
Sbjct: 542 TLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP+ S  ARGK +IN+L L   ERIT I+P  E E    N Y+  AT  G V++ 
Sbjct: 602 LKVYQLPLASRAARGKPIINLLPLEANERITAILPVREYE---ENKYIFMATAFGTVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------- 712
            L+ + +   SG IA+ L+  D ++ V+     N+I+L +  G+ VRF  S         
Sbjct: 659 PLTAYSRQRSSGIIAVNLNEGDSLIGVDITDGTNEIMLFSDAGKVVRFKESEESEVLDEN 718

Query: 713 -----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
                            +R   GR + GVRGI + +G +V+S+ +               
Sbjct: 719 GNLVLDENGQPEIKFKGVRPM-GRTATGVRGIKMGEGQRVVSLIV--------------- 762

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                    +  ILTV+E G+GKRT+  
Sbjct: 763 --------------------------------------PKNDGSILTVTENGYGKRTNLE 784

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           D+   +R+ +G+ +  VS+ N  G +V    V +ND+I+L+S++GTL+R  V E+    R
Sbjct: 785 DYPSKSRATQGVVSIKVSERN--GKVVGAVQVLENDEIMLISNRGTLVRTRVQEVSTVGR 842

Query: 876 ATKGVVIFSTAKDERVVSVERIR 898
            T+GV++  T  +E VV ++RI 
Sbjct: 843 NTQGVILIRTIDEELVVGLQRID 865



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 88/263 (33%), Gaps = 22/263 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +   +  G VK+ PL+ Y  QR  G     +   D     D+        ++ F
Sbjct: 640 YEENKYIFMATAFGTVKKTPLTAYSRQRSSGIIAVNLNEGDSLIGVDI--TDGTNEIMLF 697

Query: 593 SSLGFVYKEKVWRLPI-------------GSPQARGK---ALINILSLNQGERITTIMPF 636
           S  G V + K                   G P+ + K    +    +  +G ++      
Sbjct: 698 SDAGKVVRFKESEESEVLDENGNLVLDENGQPEIKFKGVRPMGRTATGVRGIKMGEGQRV 757

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQE 693
                  N+  ++  T++G  +R  L D+   +R+ +  + +       +++      + 
Sbjct: 758 VSLIVPKNDGSILTVTENGYGKRTNLEDYPSKSRATQGVVSIKVSERNGKVVGAVQVLEN 817

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I+L +  G  VR  +  +    GRN+ GV  I     + V+ +  +   +        
Sbjct: 818 DEIMLISNRGTLVRTRVQEVSTV-GRNTQGVILIRTIDEELVVGLQRIDEIEEAEYFEEV 876

Query: 754 YMKHMSAQRRLISGDTEEITSLK 776
                         +  EI + +
Sbjct: 877 VATSDDTPASETPDNEAEIPTAE 899


>gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
 gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas
           cervicalis ATCC 49957]
          Length = 941

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/916 (50%), Positives = 640/916 (69%), Gaps = 12/916 (1%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
              S     +G   +++ +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M + G
Sbjct: 13  TGPSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMQENG 72

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              +K Y K AR+ G+VMGKYHPHG++AIYDA+ RMAQ +SLR+ LI+GQGNFGS+DGDP
Sbjct: 73  FTADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSMDGDP 132

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL K+A  LL+ + +DTVDF PNYD S QEP VL A +PN+LVNG  GIAV
Sbjct: 133 PAAMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGANGIAV 192

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIPTHN GEV+D  +A+I  P+  L+ LM+I+ GPDFPTGA+ILGR GI++A+ TG
Sbjct: 193 GMATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALILGRAGIRSAFETG 252

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSIV+R  + IE+  G R  I ++EIPYQVNKAA++E+IAELVR K+I  I+DLRDESD
Sbjct: 253 RGSIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDLRDESD 312

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VIELK+ A+ +V+LN LYRYT+LQ+ F+VN +AL+  +P++  L   L+AF+ F
Sbjct: 313 RSGLRIVIELKKDATPEVVLNHLYRYTNLQTSFAVNFLALHQGRPQQMGLRQALQAFIDF 372

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           REEV++RR+++ L KARDR H+LVGLAIAVAN+DEV+R+IR SP+  TAR  LM R W  
Sbjct: 373 REEVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTALMARDWPV 432

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           +D+  L+ L+DDS   + ++ T+ L+E Q R ILELRL RLTGL RD I  EL+ +   I
Sbjct: 433 ADVGPLLALVDDSGNIVTNE-TVKLTEAQARGILELRLQRLTGLERDKINAELDEVAARI 491

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E L+IL+S  R + ++  EL +V+ ++ +PR + IV+GL D +DE  +    MVVT++ 
Sbjct: 492 RELLEILASHPRRMELMADELRAVRAQIASPRLSEIVDGLADQDDESLVEPGLMVVTLTR 551

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVKR PL  +RAQ RGG+GRS   MR +D V   F   TH  VLFF+S G  ++EKVW
Sbjct: 552 DGYVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVLFFTSRGMAFREKVW 611

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP   P ARG++L  +L L + E +T ++P P+DE  W+NL++VFAT  GNVRRN+LSD
Sbjct: 612 KLPEAGPTARGRSLRQLLQLREEEYVTAVLPLPQDEGLWDNLHLVFATSEGNVRRNRLSD 671

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSV 722
           F  +  SG IAMKLD  D ++ V TC + ++++L T+ G+ +RF   +  +RVFAGR+S 
Sbjct: 672 FKNVRASGLIAMKLDEGDSLIGVSTCREGDNVMLATRSGRAIRFTADVDTLRVFAGRDST 731

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTEEITS 774
           GVRGI LA GDQVI+++++ H +A  +ER  Y+K  + +RR            +      
Sbjct: 732 GVRGIKLATGDQVIALSVLRHVEASVEERAAYLKQAAQKRRNGEEAAEAAAEAEASLAEE 791

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               + VE  +S ER  EL+ +E+ +LTV++ GFGKR+S+Y++R++ R G+GI    +S 
Sbjct: 792 NAEAAEVEIALSAERFAELEEQEEILLTVTDGGFGKRSSAYEYRVTGRGGQGITNITLSS 851

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                ++VA FPV   D ++LV+D G LIR+P +++R+  R   GV++    + E+V S 
Sbjct: 852 RTGR-SVVATFPVRMGDDVMLVTDNGRLIRLPADQVRVTGRQAMGVMMLRLNEAEKVTSC 910

Query: 895 ERIRESEIVDEAESTE 910
             + E +  ++  S E
Sbjct: 911 FTVVEQQGGEDGISEE 926



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVR 707
           T  G  +R+   ++    R G+    +     +   +++       +D++L T  G+ +R
Sbjct: 821 TDGGFGKRSSAYEYRVTGRGGQGITNITLSSRTGRSVVATFPVRMGDDVMLVTDNGRLIR 880

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P   +RV  GR ++GV  + L + ++V S   V+      D                  
Sbjct: 881 LPADQVRV-TGRQAMGVMMLRLNEAEKVTSCFTVVEQQGGEDGISEEGAADGQPDLEPGA 939

Query: 768 DT 769
           D 
Sbjct: 940 DG 941


>gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
 gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769]
          Length = 934

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/919 (50%), Positives = 630/919 (68%), Gaps = 14/919 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE     ++     +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEI---PEQTPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 58  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL +AA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG  
Sbjct: 118 DGDSPAAMRYTEARLARAASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN GE++D  +A+I+ PD+ LD +++ + GPDFPTG  ILGR GI++A
Sbjct: 178 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDILQYVPGPDFPTGGTILGRAGIRSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS++IR  + +E    DR+ I+VTEIPYQVNKA + E+IAELVR K++  I+D+R
Sbjct: 238 FETGRGSVIIRARAEVEDIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P    L  +L+A
Sbjct: 298 DESDRSGMRIVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLQA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FREEV++RR ++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+  TAR  LM+R
Sbjct: 358 FIRFREEVILRRARFDLNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMER 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +W+A DI  L+ LI D    +      +L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 418 AWDAGDIAPLLALIHDEGNVVVDQRV-HLTEAQARGILELRLQRLTGLERDKIQQELSEV 476

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I++SR R + +++ EL +V+ E+ TPR T I +   D  DE  I    MVV
Sbjct: 477 ATRINELLEIIASRPRRMEVMRNELATVRAEIATPRATDIADYAGDQTDESLIEPGQMVV 536

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D +   F   TH  VLFFSS G  Y+
Sbjct: 537 TITRDGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAYR 596

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L     + IT ++P P+DE  W NL++VFAT  GNVRRN
Sbjct: 597 EKVWRLPEASPTAKGRALVNLLPDLGEDSITAVLPLPQDEDLWENLHLVFATSSGNVRRN 656

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 657 RLSDFRNIRSSGLIAMKLDDGDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 716

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--------DTE 770
           R S GVRGI LA+GD+V S+ ++ H DA  +ER  Y++  +A+RR  +          T 
Sbjct: 717 RGSSGVRGIRLAEGDEVNSLCVLNHVDATVEERSAYLRIANARRRAENAAQNGEDTDTTP 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I S   +++ +  +  ER  E++  E+ +L VS  GFG+R+S+YD+R+S R G GI   
Sbjct: 777 DIASDDEETATDLALPPERVMEMEGAEEILLIVSNAGFGRRSSAYDYRVSGRGGLGINNM 836

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                    A+VA  PV     ++LV+D G LIR+PV++IRI SR   GV +F     E 
Sbjct: 837 SFPTARRGNAVVATLPVLAGTDVMLVTDAGRLIRLPVDQIRIMSRQASGVTLFRLNDTEE 896

Query: 891 VVSVERIRESEIVDEAEST 909
           V SV  + +    DE ++T
Sbjct: 897 VTSVFPVMDDGEDDETDAT 915



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 6/130 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           ++  +  G  RR+   D+    R     +          + +++        D++L T  
Sbjct: 806 LLIVSNAGFGRRSSAYDYRVSGRGGLGINNMSFPTARRGNAVVATLPVLAGTDVMLVTDA 865

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ +R P+  IR+ + R + GV    L   ++V S+  V+    D +         +   
Sbjct: 866 GRLIRLPVDQIRIMS-RQASGVTLFRLNDTEEVTSVFPVMDDGEDDETDATGTDENATGE 924

Query: 763 RLISGDTEEI 772
              + D  + 
Sbjct: 925 TGAATDGHDD 934


>gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
 gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae
           ATCC 25976]
          Length = 895

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/909 (45%), Positives = 575/909 (63%), Gaps = 36/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A I+N +I ++ LM  I GPDFPTGA+I GR GI+ AY TGRG + +
Sbjct: 183 PPHNLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAIINGRKGIEEAYRTGRGKVYV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E T   REQI+VTE+PYQVNKA ++EKIAELV++K+I  I+ ++D SD++G  +
Sbjct: 243 RAKASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+KR A  +V+LN LY  T +Q  F +NMVAL+  +P+   L  I++AFV  R EVV 
Sbjct: 303 VIEVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPKVLNLKQIIEAFVKHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+ R+W   ++  +
Sbjct: 363 RRTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPM 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             DG  YLSE Q RAILELRL RLTGL  + I +E  +L  
Sbjct: 423 LEAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLT 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI E L ILSS  RL+ +I++EL  VK E    RRT I     D+  ED I +ED+VVT+
Sbjct: 483 EIGELLHILSSAERLMEVIREELEKVKAEFGDERRTEITAASGDINMEDLIAQEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GYVK  PLS Y AQRRGGKG+S   M+++DF+  L +V+TH ++L FSS G +Y+ K
Sbjct: 543 SHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSRGRLYQLK 602

Query: 603 VWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           V++LP  S  ARG  ++NIL L  +     T +    +     + ++  AT  G V++  
Sbjct: 603 VYQLPQASRGARGTPIVNILPLVKEENERITAILPIPNGEFSADKFIFMATASGVVKKVS 662

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L  F  +  SG IA+KL   DE++ V+    E++I+L +  G+ VRF   A+R   GR +
Sbjct: 663 LDAFSNVRSSGLIALKLREGDELIGVDITDGESEIMLFSAQGRVVRFAEKAVRAM-GRTA 721

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA                           +S++    +   E      ++SSV
Sbjct: 722 TGVRGIKLA------------------------TTEISSEEIEDAEIVEIENEEADESSV 757

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             +        +   E  ILTV++ GFGKRT   ++ + +R+ KG+ +  V++ N  G +
Sbjct: 758 SLDTDRVVSLVIPRTEGDILTVTQNGFGKRTVIGEYPVKSRATKGVVSIKVNERN--GKV 815

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           VA   V   DQI+L++D GTL+R  V E+ +  R T+GV I  TA DE VVSVER+ E +
Sbjct: 816 VAAVQVEKADQIMLITDAGTLVRTRVAEVSLVGRNTQGVRIIRTADDESVVSVERVCEHD 875

Query: 902 IVDEAESTE 910
             + +E+ +
Sbjct: 876 EDENSEALD 884


>gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
 gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam]
          Length = 824

 Score =  915 bits (2364), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/897 (42%), Positives = 554/897 (61%), Gaps = 86/897 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+
Sbjct: 1   MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR
Sbjct: 241 GSIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  +
Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R     
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q +AIL++RL RLTGL R+ I  E   L   I 
Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544
           E   IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H
Sbjct: 455 ELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS 
Sbjct: 575 EIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSS 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV
Sbjct: 632 FANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L + DQV+ M IV                                           
Sbjct: 691 KAITLGEEDQVVGMEIVEEDVN-------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV
Sbjct: 713 ---------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 756 KSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 812


>gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans]
          Length = 935

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/950 (42%), Positives = 564/950 (59%), Gaps = 79/950 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +  H L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP ID+D LME I GPDFPT  ++ G  GI   Y TGRG + +
Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG +ADV+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQLLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP  AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   L+EVQ   ILE+RL RLTGL ++ +  E   L  
Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I++EL+S+++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP   P ARG+ +IN + L QGER+  ++P  E     +  YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYA---DGHYVFFATRKGMVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI------------ 710
           S+F    + GK+A+ LD  D ++ V     E D+LL    G+ VRF              
Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEADEVAV 719

Query: 711 --------------------SAIR----------VFAGRNSVGVRGISLAKGDQVISMAI 740
                                  R             GR+S GVRGI LAK + V+S+ +
Sbjct: 720 DEAAADDALAADDEATGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A+   ++         A+    +   ++                         + +I
Sbjct: 780 AEPAEGQDEDADDADLAQEAEADAQTRTADD------------------------ADAYI 815

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +E G+GKRT   ++    R  +G+     S+ N  G LV    ++  D+++L+SD G
Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R   +EI    R T+GV +   +K E++ +VER+  S + +E  S E
Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923


>gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1]
 gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1]
          Length = 919

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G+RI +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + ++      +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  +     D  + +        +            +
Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIEADEEGVEAEAPDEAAGAEEA 916

Query: 775 LKN 777
            + 
Sbjct: 917 PQE 919


>gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820]
 gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201]
 gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 823

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4]
 gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4]
          Length = 907

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/916 (43%), Positives = 559/916 (61%), Gaps = 92/916 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  +
Sbjct: 187 LVEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE 
Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT 
Sbjct: 307 KRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRTI 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++  
Sbjct: 367 FELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLERA 426

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI E
Sbjct: 427 GTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH G
Sbjct: 487 LMHILASTERLMEVIREELETVRDVYGDERRTEITAASHDIDMEELIAREDVVVTLSHEG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++L
Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARGK ++NIL L  GERIT I+P  E        ++  AT  G V++  L+ F 
Sbjct: 607 PHATRTARGKPIVNILPLEDGERITAILPVDEFS---PEKFIFMATGDGTVKKTPLNQFA 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------------- 712
            +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF  +               
Sbjct: 664 NVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKAGKVVRFKEAEEIPVLDEQGKPVLD 723

Query: 713 -----------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRG+ L                                
Sbjct: 724 ENGQPEIKFKGVRPM-GRTASGVRGMKL-------------------------------- 750

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                    +     +   E  ILTV++ G+GKRT   ++    
Sbjct: 751 ---------------------AENDQVVSLIVPSNEGDILTVTQNGYGKRTELSEYPTKG 789

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  V+E+    R T+GV 
Sbjct: 790 RGTQGVVSIKVSERN--GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVT 847

Query: 882 IFSTAKDERVVSVERI 897
           +  TA+DE VV ++RI
Sbjct: 848 LIRTAEDESVVGLQRI 863



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 157/447 (35%), Gaps = 36/447 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R          E       A
Sbjct: 469 EHEKILDEYKTLLEEIAELMHILASTERLMEVIREELETVRDVYG-----DERRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDFIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   + E        D    E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEDGERITAILPVDEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL+ +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSEIMLFSKAG 700

Query: 597 FVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDE 640
            V + K                   G P+ + K    +    S  +G ++          
Sbjct: 701 KVVRFKEAEEIPVLDEQGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI 760

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDIL 697
              N   ++  T++G  +R +LS++    R  +  + +   +     +      + ++++
Sbjct: 761 VPSNEGDILTVTQNGYGKRTELSEYPTKGRGTQGVVSIKVSERNGPVVGAVQVEEGDEMM 820

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  VR  +S +    GRN+ GV  I  A+ + V+ +  +   +   +  +   + 
Sbjct: 821 MITDAGTLVRTRVSEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVEEVEEVELPEGEE 879

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784
             A      G   E+ ++ + +     
Sbjct: 880 AEATEANAEGQAPEVPTVDDAAEGSEE 906


>gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187]
 gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1]
 gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97]
 gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187]
 gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus cereus Q1]
 gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26]
 gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 823

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 554/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  ++ I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGDEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1]
 gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1]
          Length = 921

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 408/953 (42%), Positives = 561/953 (58%), Gaps = 109/953 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNPD+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPDVTIDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELEEADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI    E E+ D  E+ E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDDVVEADE 899



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 91/245 (37%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G+RI +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + ++      +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  +     D  + +        +      +      
Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDDVVEADEEGVEAEAPDNEEAAGAE 916

Query: 775 LKNDS 779
                
Sbjct: 917 EAPQE 921


>gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W]
 gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W]
          Length = 823

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
 gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102]
          Length = 823

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 552/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580]
 gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
 gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580]
 gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580]
 gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2]
          Length = 822

 Score =  914 bits (2363), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/904 (42%), Positives = 558/904 (61%), Gaps = 88/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHKPQVQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ V+
Sbjct: 303 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL +A+ +LDEV+ +IR S   E A+  L+++         
Sbjct: 363 RRRTAFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVELIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  VK+  +  RRT IV      +EDED I RE++VVT++H GY+
Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDERRTEIVTSGLETIEDEDLITRENIVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPSSTYRSQKRGGKGIQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +   +  Y+ F TKHG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVGEFD---DESYLFFTTKHGISKRTPLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V        I++ TK G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALSLRDEDELIAVRLTDGNKQIIIGTKNGLLIRFPETDVRQM-GRTAAGVKGIN 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+EKG+GK T + ++R+ +R GKG++   +++ N  G+LV V    
Sbjct: 708 --------DSHVLIVTEKGYGKLTPASEYRVQSRGGKGLKTCKITENN--GSLVTVKATT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906
             + +++++  G +IR+ + +I    R T+GV +    + E V +V  + + E  D  E 
Sbjct: 758 GEEDLMIITASGVIIRMDIKDISTTGRVTQGVRLIRLGEQEHVATVALVEKDEENDSEEQ 817

Query: 907 ESTE 910
           E+ E
Sbjct: 818 EADE 821


>gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae]
          Length = 869

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/906 (43%), Positives = 557/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+R GLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLSEVVDACHHLLANPEATVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F+A R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQPKLLNLKEMLVCFLAHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  AR+ LM +SW++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIEIIKAAPTPPIARQALMAKSWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 ++++ + +DG   LSE Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL +VK E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTIITEELTAVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPMREFS---ADKYVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++       E+D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGGEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GRVVAATLVDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849


>gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370]
          Length = 916

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/918 (50%), Positives = 613/918 (66%), Gaps = 25/918 (2%)

Query: 1   MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ I          E     + I DEM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 1   MSDDITTIDPPAPSGEPEFQRIDIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   + G    K Y K ARI G+ MGKYHPHG+AAIYDALARM QDWS+RL LI+GQGNF
Sbjct: 61  WTSHENGFTAGKPYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D DPPA+ RYTE RL K A  LL D+ KDTVDF+PNYDG+ QEP VL AR+PN+LVN
Sbjct: 121 GSMDPDPPASMRYTEARLAKVADALLADIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATNIP HNLGEV+DGC+A +DNP I+L+ L+ II GPDFPT  +ILG  G 
Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDGCLAYMDNPMIELEELIRIIPGPDFPTAPLILGTAGA 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQ--IVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           + AY  GRGSI++R    +E+      +  IV+T IPYQV K+ ++EKIAE  ++KRI  
Sbjct: 241 RKAYTEGRGSIIMRARHTVEEGRRGDSRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDES+R+G RVVI+LKR A+ DV+LNQL+R T  QS F  NM+A+ G +PE   L 
Sbjct: 301 ISDIRDESNREGVRVVIDLKRDATPDVVLNQLWRNTPAQSNFPANMLAIRGGRPELLGLK 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I+++FV FREEV+ RRTK+ L KARDRAH+L+GL IAV NLDEVV+IIR S NP  AR 
Sbjct: 361 DIIESFVRFREEVITRRTKFELMKARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARE 420

Query: 416 ELMQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            L+ R W   +I   I L++      +    T  LSE+Q RAIL+LRL RLT LGRD+I 
Sbjct: 421 RLLAREWPIGEIAPYIRLVEAIEDDALTGTETYRLSEIQVRAILDLRLHRLTALGRDEIG 480

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L   I E L IL+ R +L G++++EL++VK    TPR + I      ++DED I 
Sbjct: 481 EELEGLAKAIAEFLSILADRVKLYGVMREELIAVKAAYATPRLSEITAPADGIDDEDLIE 540

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           R+DMVVT++  GY+KR PLS +RAQ RGGKGRSG+  +DED +  +F+ STHT VLFFS+
Sbjct: 541 RDDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFFST 600

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATK 653
            G VY++KVWRLP G    RG+ ++N+L  L+QGE I  ++  PEDE+ W  L+V+FAT 
Sbjct: 601 AGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFATA 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPIS 711
            GNVRRN +  F  I  +GK AMK +  DE  ++ V   ++ +D+LL ++ G+ +RFP  
Sbjct: 661 KGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFPAD 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R F  R S GVRG++L  GD+VIS++I+        E                 +   
Sbjct: 721 DVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEER--------------DEYLR 766

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
               K +   E  I+ ER  EL  KEQF+LTV   G+GK +S+Y++R + R G+GI   D
Sbjct: 767 YAPWKAEKDGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNID 826

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + N  G +VA FP    DQ++LV+D+  LIR+P++ +R+  R + GV +F+ A +E+V
Sbjct: 827 NIERN--GLVVASFPAARADQLMLVTDQAKLIRLPLDSLRVIGRGSAGVRLFNVADNEQV 884

Query: 892 VSVERIRESEIVDEAEST 909
           VS  R+ E+E  D+A   
Sbjct: 885 VSAVRLAETEGDDDAGEE 902



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 91/254 (35%), Gaps = 16/254 (6%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +     S   A      DE    +   +++ ++  T  G   R P+S  R    R   G 
Sbjct: 518 YATPRLSEITAPADGIDDE----DLIERDDMVVTITLDGYIKRTPLSTFRA-QNRGGKGR 572

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G++    D + +M +                +     RL  G          +     +
Sbjct: 573 SGMATKDEDAIATMFVASTHTPVLFFSTAGKVYRQKVWRLPEGGAVTRGRPVVNLLPSLD 632

Query: 785 ISEERCQELKLKEQF-------ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             E     L L E         ++  + KG  +R +   F     +GK   A    + +E
Sbjct: 633 QGETIAAVLALPEDEAEWGKLHVMFATAKGNVRRNAMDAFANIPSNGK--FAMKFEEGDE 690

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVER 896
              L+ V  +++ D ++L S +G  IR P +++R   SR + GV   +    + V+S+  
Sbjct: 691 -DHLIGVALLSEGDDVLLASRQGKAIRFPADDVREFQSRTSTGVRGMALKDGDEVISLSI 749

Query: 897 IRESEIVDEAESTE 910
           +    + D+ E  E
Sbjct: 750 LHRVGVRDQEERDE 763



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 91/262 (34%), Gaps = 35/262 (13%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+  +  G V+R  +  +      GK        DED +  + ++S    VL  S  G  
Sbjct: 655 VMFATAKGNVRRNAMDAFANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKA 714

Query: 599 YKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDES---------- 641
            +     +         G      K    ++SL+   R+        DE           
Sbjct: 715 IRFPADDVREFQSRTSTGVRGMALKDGDEVISLSILHRVGVRDQEERDEYLRYAPWKAEK 774

Query: 642 --------------SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                         S    +V+    +G  + +   ++ +  R G+  + +D+ +    V
Sbjct: 775 DGEPTIAAERFAELSEKEQFVLTVCSNGYGKLSSAYEYRRTGRGGQGIVNIDNIERNGLV 834

Query: 688 ETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
                    + ++L T   + +R P+ ++RV  GR S GVR  ++A  +QV+S   +   
Sbjct: 835 VASFPAARADQLMLVTDQAKLIRLPLDSLRVI-GRGSAGVRLFNVADNEQVVSAVRLAET 893

Query: 745 DADYDERICYMKHMSAQRRLIS 766
           + D D         +A     +
Sbjct: 894 EGDDDAGEELTDSAAAPEGDGT 915


>gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73]
 gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans]
          Length = 935

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/950 (42%), Positives = 564/950 (59%), Gaps = 79/950 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ESAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YYKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ +  H L+ D+ K+TVDF+PNYD   QEP V+  R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSRLTHELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+IDNP ID+D LME I GPDFPT  ++ G  GI   Y TGRG + +
Sbjct: 183 PPHNLTESINACIALIDNPQIDVDGLMEYIPGPDFPTAGIVNGTAGIIAGYRTGRGRVRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RARAEIEIQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG +ADV+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AFV  R EVV 
Sbjct: 303 YIEVKRGEAADVVLNNLYQQTQMESVFGINMVALVDGRPQLLNLKQMLEAFVRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL +A+AN+DE++ +I+ S NP  AR  ++ ++W    +  L
Sbjct: 363 RRTIFELRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +              G   L+EVQ   ILE+RL RLTGL ++ +  E   L  
Sbjct: 423 LSAAGAEASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I   + IL +   LL +I++EL+S+++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 AISGLIRILENPDVLLEVIREELVSIREEYGDARRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP   P ARG+ +IN + L QGER+  ++P  E     +  YV FAT+ G V++  L
Sbjct: 603 VYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYA---DGHYVFFATRKGMVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI------------ 710
           S+F    + GK+A+ LD  D ++ V     E D+LL    G+ VRF              
Sbjct: 660 SEFAYQLKRGKVAINLDEGDALVDVALTDGERDVLLFASNGKTVRFSERPKDEEVDEVAV 719

Query: 711 --------------------SAIR----------VFAGRNSVGVRGISLAKGDQVISMAI 740
                                  R             GR+S GVRGI LAK + V+S+ +
Sbjct: 720 DEAAADDALAADDEAAGEDGDETRGARRKSRGGVKPTGRSSRGVRGIRLAKSEYVVSLIV 779

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A+   ++         A+    +   ++                         + +I
Sbjct: 780 AEPAEGQDEDADDADLAQEAEADAQTRTADD------------------------ADAYI 815

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT +E G+GKRT   ++    R  +G+     S+ N  G LV    ++  D+++L+SD G
Sbjct: 816 LTATENGYGKRTPLGEYPRKGRGTQGVIGIQTSERN--GKLVGAVLLSVKDEVLLISDGG 873

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R   +EI    R T+GV +   +K E++ +VER+  S + +E  S E
Sbjct: 874 TLVRTRASEISRVGRNTQGVTLIRLSKGEKLQAVERLDGSLVEEEPLSGE 923


>gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264]
 gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
 gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134]
 gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264]
 gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876]
 gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W]
 gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550]
 gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24]
 gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4]
 gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15]
 gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2]
 gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185]
 gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676]
 gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171]
          Length = 823

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/894 (42%), Positives = 552/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGVSKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +    +D+ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEEDQEVATVAKAQKD 810


>gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996]
          Length = 921

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/922 (40%), Positives = 553/922 (59%), Gaps = 28/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDCLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E    +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E++VS+ER+ E      A   E
Sbjct: 885 EQLVSLERVAEEPEDASASGEE 906


>gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 902

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/909 (43%), Positives = 566/909 (62%), Gaps = 34/909 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G   NK 
Sbjct: 3   ETAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR ++++GQGNFGSVDGD  AA RY
Sbjct: 63  YFKSARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH L+ D+ K+TVDF+PNYD    EP V+  R+P++LVNG  GIAVGMATNI
Sbjct: 123 TESRMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++ C+A+ID P++D++ LME I GPDFPT  +I G  GI   Y TGRG + I
Sbjct: 183 PPHNLTEAINACIALIDTPELDVEGLMEYIPGPDFPTAGIINGTAGIAAGYRTGRGRVRI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E     RE IVVTEIPYQVNKA ++EKIAELV+EK++  I++LRDESD+ G R+
Sbjct: 243 RAKADVEVADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IE+KRG SA+V+LN LY+ T ++S+F +NMVAL   +P+   L  +L+AF+  R EVV 
Sbjct: 303 YIEIKRGESAEVVLNNLYQQTQMESVFGINMVALIDGRPQLMNLKQMLEAFIRHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ AR  ++ ++W    +  L
Sbjct: 363 RRTIYELRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGAL 422

Query: 431 IDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           +      +             +G   LSEVQ   ILE+RL RLTGL ++ + +E   L  
Sbjct: 423 LGAAGAEASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I+  + IL +   LL +I+ EL+++++E    RRT I     D++  D I  ED+VVT+
Sbjct: 483 VIQGLIRILENPDVLLQVIRDELINIREEYGDERRTEIRHSEEDLDILDLIAPEDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++L F+S G V+   
Sbjct: 543 SHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLP 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV FAT++G V++  L
Sbjct: 603 VHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVFFATRNGTVKKTPL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF  S +R   GR + 
Sbjct: 660 SEFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSM-GRTAT 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI + KG++V+S+ +   A                    I  +++E  + +   + +
Sbjct: 719 GVRGIRMPKGEEVVSLIVSDPAG------------------GIEIESDEDAADEVVDTTD 760

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  +            +ILT +E G+GKRT   ++    R  +G+     ++ N  G LV
Sbjct: 761 GADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERN--GKLV 818

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--S 900
               +   D+++L+SD GTL+R   +EI    R T+GV +   +K E++ +VER+     
Sbjct: 819 RAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGEKLQAVERLDASLD 878

Query: 901 EIVDEAEST 909
           E+ D  E  
Sbjct: 879 EVDDVMEEA 887



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 6/116 (5%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              +++   +  G  K+T   +F    R  +G  A ++   ++  ALV V   + +  ++
Sbjct: 640 ADNRYVFFATRNGTVKKTPLSEFAF--RLARGKIAINL---DDGDALVGVALTDGDRDVL 694

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           L +  G  +R   + +R   R   GV      K E VVS+  + +     E ES E
Sbjct: 695 LFASNGKTVRFGESTVRSMGRTATGVRGIRMPKGEEVVSL-IVSDPAGGIEIESDE 749



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 95/267 (35%), Gaps = 32/267 (11%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VK+ PLS +  +   GK    + + D D +  + +      VL F
Sbjct: 639 YADNRYVFFATRNGTVKKTPLSEFAFRLARGKI--AINLDDGDALVGVALTDGDRDVLLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINI-----------------LSLNQGERITTIM- 634
           +S G   +     +      A G   I +                 + +   E     + 
Sbjct: 697 ASNGKTVRFGESTVRSMGRTATGVRGIRMPKGEEVVSLIVSDPAGGIEIESDEDAADEVV 756

Query: 635 --------PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDE 683
                      +     N  Y++ AT++G  +R  L+++ +  R  +  + +       +
Sbjct: 757 DTTDGADAAVIDVADDGNVAYILTATENGYGKRTPLTEYPRKGRGTQGVIGIQTTERNGK 816

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++        +++LL +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  
Sbjct: 817 LVRAVLLGATDEVLLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDA 875

Query: 744 ADADYDERICYMKHMSAQRRLISGDTE 770
           +  + D+ +      +          E
Sbjct: 876 SLDEVDDVMEEASVSAESMAPPPVTEE 902


>gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107]
 gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107]
          Length = 883

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/899 (45%), Positives = 564/899 (62%), Gaps = 68/899 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH L+ DL K+TVDF PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV GC+A++DNPDI +D LME I GPDFPTGA+I GR GI  AY TGRG +V+R  
Sbjct: 186 NLGEVVRGCLAMVDNPDITIDELMEYIPGPDFPTGAIINGRAGIVEAYRTGRGRVVMRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+VTEIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R+VI
Sbjct: 246 AEIETDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+  S DV+LN L+  T LQ+ F VNMVAL+  +P+   L  +L+AF+  R EVV RR
Sbjct: 306 EVKKTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQPKLLNLKDMLEAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P  A+  L  R W A  +   ++
Sbjct: 366 TVYLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D++             DG  YLS  Q +AIL+LRL RLTG+  D +  E +    EI
Sbjct: 426 RAGDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+IL +  RL+ +I+ EL  V  +    RRT I+   LD+  ED I  ED VVT+SH
Sbjct: 486 AEYLEILGNAIRLMEVIRAELEQVIADFGDARRTEIIASSLDLTTEDLIAVEDRVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL+ Y+AQRRGG G+S   ++DEDFV  L I STH ++L F+S+G VY  KV+
Sbjct: 546 GGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKVYSLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P    Q+RG+ ++N+L L +GERIT+I+P    +   N+ ++  AT+ G V++  L++
Sbjct: 606 MIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYD---NDHFIFMATRKGTVKKTVLTE 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  +  +GK A++LD  D ++         D++L +  G+  RF  S +R   GR+S GV
Sbjct: 663 FQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAM-GRSSRGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI +A+G  ++ M I                                            
Sbjct: 722 RGIRIAEGQFIVGMVI-------------------------------------------- 737

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     L    +LTVSE G+GKRT   +F    R  +G+     +  N  G LV  
Sbjct: 738 ---------PLAGGQVLTVSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRN--GELVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V D ++I+L+SD+GT++R  V+E+ + SR T+GV +      ER+  +ERI ES   
Sbjct: 787 VQVFDGEEIMLISDQGTMVRTRVDEVSLLSRNTQGVRLIKLKDGERMQGIERIEESADE 845



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 15/258 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +  +   +  G VK+  L+ +++ R  GK    +   D    T +   +    V+
Sbjct: 638 KSYDNDHFIFMATRKGTVKKTVLTEFQSLRANGKRAIELDEGDTLVGTAV--TNGACDVI 695

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSS G   + +  ++      +RG   I         RI                 V+ 
Sbjct: 696 LFSSSGKAARFRESQVRAMGRSSRGVRGI---------RIAEGQFIVGMVIPLAGGQVLT 746

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R  + +F    R  +  + + + D   E++         +I+L +  G  VR
Sbjct: 747 VSENGYGKRTPVDEFPAKGRGSQGVIGMQTTDRNGELVGAVQVFDGEEIMLISDQGTMVR 806

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  + + + RN+ GVR I L  G+++  +  +  +  +  +R                
Sbjct: 807 TRVDEVSLLS-RNTQGVRLIKLKDGERMQGIERIEESADENAKRELANAEEGDVEISDES 865

Query: 768 DTEEITSLKNDSSVEGNI 785
           D +      + ++   + 
Sbjct: 866 DIDLDAQADSQNNETADD 883


>gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
 gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054]
          Length = 867

 Score =  914 bits (2362), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRAATHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAESENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR++I     ++  ED
Sbjct: 482 KIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + ++  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI+M +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIAMLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+E+R   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             +++I
Sbjct: 844 SGLQQI 849



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames]
 gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987]
 gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne]
 gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055]
 gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum]
 gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94]
 gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI]
 gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames]
 gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987]
 gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor']
 gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne]
 gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A)
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488]
 gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193]
 gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389]
 gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465]
 gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174]
 gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108]
 gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99]
 gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684]
 gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293]
 gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1]
 gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248]
 gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI]
          Length = 823

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 823

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKTQKDD 811


>gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
 gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1]
          Length = 875

 Score =  914 bits (2361), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/905 (44%), Positives = 576/905 (63%), Gaps = 68/905 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E    ++
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEED 847

Query: 906 AESTE 910
            ++ +
Sbjct: 848 LDTID 852



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 813 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 872

Query: 775 LKN 777
            + 
Sbjct: 873 EEE 875


>gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
 gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001]
          Length = 920

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 466/904 (51%), Positives = 631/904 (69%), Gaps = 11/904 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE        E   +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTEISDQPGVPEPSDLLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  ++K Y K AR  GEVMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 61  HESGFTYDKPYRKSARAVGEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KA+ FLL+D+ +DTVDF+PNYD S +EP VL A +PN+L+NG  
Sbjct: 121 DGDSPAAMRYTEARLAKASTFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGAT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHN  EV+D  +A+I NPD+ LD LME + GPDFPTG +ILGR+GI++A
Sbjct: 181 GIAVGMATNIPTHNPSEVIDATLALIANPDLSLDDLMEYVPGPDFPTGGIILGRSGIRSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +ATGRG+++IR  + IE+   DR+ I+VTEIPYQVNKA + E+IA+LVR K+I  IAD+R
Sbjct: 241 FATGRGAVIIRAKADIEEIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G KP    L  +L+A
Sbjct: 301 DESDRSGMRVVIEIKRDATPEVVLNQLYRFTQLQTSFGVNMLALDGGKPRLMGLKDVLEA 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+AFREEV++RR+++ LNKARDR H+LVGL IAVAN+D V+ +IR +P+   AR  LM  
Sbjct: 361 FIAFREEVILRRSRFELNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAA 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W+A++++ L+ LI D    +  DG + L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 421 QWDAAEVEPLLALIHDDGNVV-VDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV 479

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+I+ S  R + +++ EL   + E+ TPR T I +   D +DE  I    MVV
Sbjct: 480 AQRINELLEIIGSHVRRMEVLRDELSVARAEIFTPRMTEIADYAGDQDDESLIEPGQMVV 539

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+G   R +D V   F   TH  V+FFSS G VY+
Sbjct: 540 TITREGFIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYR 599

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KVWRLP   P A+G+AL+N+L     + IT ++P P+DE  W  L++VFAT  GNVRRN
Sbjct: 600 QKVWRLPEAGPAAKGRALVNLLPDLGSDSITAVLPLPQDEELWEALHLVFATASGNVRRN 659

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +LSDF  I  SG IAMKLD  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 660 RLSDFRNIRSSGMIAMKLDEGDSLIGVATCREGQDVFLATRGARCIRFQITDDTLRVFAG 719

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR--------LISGDTE 770
           R S GVRGI LA+GD+VIS+A++ H +A  +ER  Y++  +A+RR            D  
Sbjct: 720 RGSSGVRGIRLAEGDRVISLAVLNHVEATVEERSAYLRMANAKRRAENAAEAAEEDVDAV 779

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +  S +  S  +  +S ER ++L++ E+ +L VS+ GFG+R+S+YD+R+S R G+GI   
Sbjct: 780 QPDSDEEGSDTDALLSPERFEQLEVAEEILLIVSDGGFGRRSSAYDYRVSGRGGQGITNM 839

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S       + A  PV     ++LV+D G LIRVPV+++R+ +R   GV +F    DER
Sbjct: 840 TFSANKRGKEVAATLPVLAGTDVMLVTDAGRLIRVPVDQVRVMARQASGVTLFRLNDDER 899

Query: 891 VVSV 894
           V SV
Sbjct: 900 VTSV 903


>gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
 gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B]
 gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442]
          Length = 823

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/895 (42%), Positives = 553/895 (61%), Gaps = 86/895 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKDD 811


>gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440]
 gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440]
          Length = 923

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/950 (42%), Positives = 559/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTIDELMQHIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDVRRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQNADLDEELDEAEDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGSQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIE 896



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 93/247 (37%), Gaps = 15/247 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G+RI +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQRIISML------IPESGSQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + ++      +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  +     D  + +        +      + EE   
Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDEVIETDEEGVEAVAPDNENEEAAG 916

Query: 775 LKNDSSV 781
                  
Sbjct: 917 ADEAPQE 923


>gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu]
          Length = 851

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/904 (42%), Positives = 557/904 (61%), Gaps = 77/904 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLHNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F+A R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLAHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAETENATAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDILS   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILSRPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHSG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI+M +                                              
Sbjct: 717 MQLEDGQQVIAMLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E  D  
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAEDGD-G 841

Query: 907 ESTE 910
           E+ E
Sbjct: 842 EADE 845


>gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
 gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD]
          Length = 867

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 555/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L +GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6]
 gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6]
          Length = 867

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
 gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3]
          Length = 871

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/910 (44%), Positives = 562/910 (61%), Gaps = 70/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAREISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL KDTVD+  NYDG+ Q PVVL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMSKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+ C+A+I++ DI +D LM  + GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLREVVNACLALINDSDITIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I      R+ I++ EIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RAKAEVITDEKTGRDTIIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL++G   DV+LN LY  TSLQ++F +NMVAL   +P    L  IL+AF+  R EVV
Sbjct: 303 VVIELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT YLL KAR+R HVL GLAIA+AN+D V+ +++ SP+P  AR  L+ +SW   ++  
Sbjct: 363 TRRTLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTS 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG   LS  Q +AIL+LRL RLTGL  + +  E     
Sbjct: 423 MLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
           IEI + +DIL    RLL +I++EL  +  E    RRT I +   D+  ED I  ED VVT
Sbjct: 483 IEIADLMDILQDPERLLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y+ QRRGG G++ + ++DEDFV  L I +TH ++L FS+ G VY  
Sbjct: 543 LSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWI 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+    +RG+ ++N+L L++GER+T+I+P  E     ++ ++  AT +G V++  
Sbjct: 603 KVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEE---HTDDRFIFMATANGYVKKTD 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F     +G  A+ L   D ++         D++L +  G+  RF  SA+R   GR S
Sbjct: 660 LASF-APRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPM-GRAS 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI+LA+G ++IS+ +                                         
Sbjct: 718 RGVRGINLAEGHRMISLLV----------------------------------------- 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +LTVSE G+GKRT+  DF    R GKG+ A   S+ N  G L
Sbjct: 737 ------------PDATGTVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRN--GRL 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V   D+++L+S++GTL+R   +++    R T+GV I  T + E +V  ERI ESE
Sbjct: 783 VGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRAERIVESE 842

Query: 902 IV-DEAESTE 910
              +  E+TE
Sbjct: 843 ASLESPEATE 852



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/447 (14%), Positives = 149/447 (33%), Gaps = 28/447 (6%)

Query: 341 MVALNGYKPERFTLI-GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
              L+  +          +      R   +    + LL + +D+   +  L   + + + 
Sbjct: 440 FYGLHDGEYRLSPTQAQAILDLRLHRLTGLEH--EKLLKEYQDKLIEIADLMDILQDPER 497

Query: 400 VVRIIRFSP---NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           ++ +IR        E       +   +  D+     +  +      S G    ++     
Sbjct: 498 LLAVIREELEEITAEFGDERRTEIRDSQEDLTAEDLITPEDRVVTLSHGGYAKTQPLAEY 557

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
            ++ R             + +  L I       +  S    +  IK   + V       R
Sbjct: 558 QVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSNFGKVYWIKVYQIPVAGRASRGR 617

Query: 517 ------RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
                 +    E +  +   +    +  +   +  GYVK+  L+ +  +  G +      
Sbjct: 618 PMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYVKKTDLASFAPRSAGLRAIVLG- 676

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
             D+D +    I      V+ FSS G   +     +      +RG   +  ++L +G R+
Sbjct: 677 --DDDVLVGTAITDGSQDVMLFSSEGKATRFSESAVRPMGRASRG---VRGINLAEGHRM 731

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSV 687
            +++             V+  +++G  +R  + DF    R GK  + + S      ++  
Sbjct: 732 ISLL------VPDATGTVLTVSENGYGKRTAVDDFPTKGRGGKGVIAMASSQRNGRLVGA 785

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                 ++++L +  G  VR     +    GRN+ GVR I   +G+ ++    ++ ++A 
Sbjct: 786 LQVFSGDELMLISNQGTLVRTQCDQVSQL-GRNTQGVRIIRTKEGETLVRAERIVESEAS 844

Query: 748 YDERICYMKHMSAQRRLISGDTEEITS 774
            +         + +    +G+ E    
Sbjct: 845 LESPEATEGSAATEGTEGAGNIEGGEG 871


>gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160]
 gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160]
          Length = 860

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/903 (42%), Positives = 555/903 (61%), Gaps = 76/903 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+    + 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + +I+ +P P  A++ELM R+W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRAWDSSLVREMLSRAETDNASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERISAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   E 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEN 842

Query: 907 EST 909
           +S 
Sbjct: 843 DSD 845



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 14/238 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PL  +   R   KG   V + + D++    I      V+ F
Sbjct: 633 FSADKFVFMATALGTVKKTPLEAF--SRPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLF 690

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   +  + L  G+ +  ++   +         V+ AT
Sbjct: 691 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 742

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++      E  I+L T  G  +R  
Sbjct: 743 ENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTR 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           +S IR   GR + GV  ISL +G ++  +  V  A+ + +                  
Sbjct: 803 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEGESENDSDGSAEGDNGGESGGA 859


>gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314]
          Length = 920

 Score =  913 bits (2360), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/920 (40%), Positives = 552/920 (60%), Gaps = 28/920 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E    +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAES 908
           E +VS+ER+ +    +  E 
Sbjct: 885 ETLVSLERVAKEPEDESNED 904



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 106/273 (38%), Gaps = 40/273 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++      S    ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTSGSDDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S +  +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E++ ++L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GVR I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +S+  V     D              + + S D
Sbjct: 888 VSLERVAKEPEDESNEDLQDTGTEVGQEIPSDD 920


>gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
 gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28]
          Length = 822

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
 gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3]
 gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29]
          Length = 823

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842]
 gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 823

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas]
 gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas]
          Length = 898

 Score =  913 bits (2359), Expect = 0.0,   Method: Composition-based stats.
 Identities = 439/900 (48%), Positives = 635/900 (70%), Gaps = 5/900 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +   +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K 
Sbjct: 2   SDVNNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RY
Sbjct: 62  YKKAARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL KAAHFLL+D+ +DTVDFRPNYD +  EPVVL A +PN+LVNG GG+AVGM+TNI
Sbjct: 122 TEARLAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P+HNLGEV+D C+A IDNP+I  D L+ I+RGPDFPTG  ILG  GI++A+ TG+G+I+I
Sbjct: 182 PSHNLGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +G +H+E     ++ I++ EIPYQVNKA ++E+I EL++EK+I  I DLRDES++ G RV
Sbjct: 242 QGKTHLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+  S  VILNQ+   T L++ FS+N + L+  KP+  +L  I+  FV +R+EV+ 
Sbjct: 302 AIELKKQVSHQVILNQILGLTPLRTSFSINTLVLDNNKPKVMSLPDIISTFVEYRKEVLT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKD 429
           RRT++ L K R+RAH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +++
Sbjct: 362 RRTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVRE 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +I+L+ DS   I  D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  +
Sbjct: 422 MIELVADSKS-IVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTE 480

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L ++  LL +IK     +K +L  PRRT I     + + ED I +EDMVVTV+  GY+K
Sbjct: 481 LLKNKESLLQLIKDGFKEIKAKLAVPRRTTIDYSHFETDIEDLIPKEDMVVTVTMSGYIK 540

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  LS YRAQ+RGGKGR G  +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G
Sbjct: 541 RAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLG 600

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            P +RG++L+NI  L++ E IT++MP P++      L +VFAT  GN+RRN LSDF  + 
Sbjct: 601 EPTSRGRSLVNIFPLSENESITSVMPLPDNVEDAEILNIVFATASGNLRRNALSDFQYVP 660

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIAM LD+ D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L
Sbjct: 661 SNGKIAMVLDTGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKL 720

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +  D VISM+++L  D D +++  Y+K +   +R+   +   +         +  + ++ 
Sbjct: 721 SSDDNVISMSVLLAMDIDSEKKDLYLK-VPLDKRMCVKEEGVVNGGIAKILCDLGLEQDI 779

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   EQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA FPV  
Sbjct: 780 FVTMVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTARN--GNVVASFPVES 837

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ND I+L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV +I +++   + +  
Sbjct: 838 NDHIMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKREKVVSVAKIIDAKDNSDIDGN 897


>gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
 gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200]
          Length = 822

 Score =  913 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 554/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL+ VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELIEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407]
 gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC
           10792]
          Length = 823

 Score =  913 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 553/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEE------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 709 ----------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273]
 gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272]
 gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273]
          Length = 823

 Score =  913 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 551/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 845

 Score =  913 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/901 (43%), Positives = 567/901 (62%), Gaps = 62/901 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K    VS+  EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M +M  +WNK 
Sbjct: 3   EFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R  LI+GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH +L DL K+TVDF PNYD    EP+V+ AR PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMSRIAHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+  C+A++D+P+   + L  ++  PDFPT   I GR G   AY TGRG +V+
Sbjct: 183 PPHNLTEVISACLALVDDPETPDEDLFTLVPAPDFPTAGFIHGRAGSIEAYRTGRGRVVM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R     E     +R+ I+VTE+PYQVNKA ++E+IAE+V+EKR+  I+DLRDESD+ G R
Sbjct: 243 RARCEFETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELKR A+ADV+LN LY++T +QS+F++NMVAL    P    L  +L+AF+  R EVV
Sbjct: 303 IAIELKRDANADVVLNNLYQHTVMQSVFNINMVALLDGAPRTLGLRDLLQAFIQHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L GLA+A+ NLD ++ +IR + +P  A+ +++ +SW    +  
Sbjct: 363 TRRTVFELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAA 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+    + S  + +DG  +LSE+Q +AIL+LRL RLTGL +D IR+E  +L   I+E L+
Sbjct: 423 LLVERGEPSEGMHADG-YHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S++RL+ +I++EL++++D+    RR+ IV    D+  ED I  E+MVVT +H GY+K
Sbjct: 482 ILGSKTRLMEVIREELVAIRDQYGDARRSEIVADTGDISTEDLITEEEMVVTFTHAGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             P++V+ AQRRGGKG+     ++EDFV  +F  STH   LFFS+LG V+ +KV++LP  
Sbjct: 542 AQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQLPQA 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+GK ++N+LSL   ERIT ++P  +        +V   T  G V++  + ++ +  
Sbjct: 602 GRGAKGKPIVNMLSLAPTERITAVLPVRDFT---EGQFVCMVTSLGVVKKTPVMEYSRPR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G  A+ LD  D +++V     + + +L T+ G  VRFP + +R   GRN+ GVRGISL
Sbjct: 659 SQGINAINLDPGDRLVAVGLSDGQREFMLFTRHGMAVRFPEAKVRAM-GRNARGVRGISL 717

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+VIS   V  +                                             
Sbjct: 718 EENDRVISAQWVDSS--------------------------------------------- 732

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILT +  G+GK T   ++R +NR GKG+ A   ++ N  G +V    V +
Sbjct: 733 --------QVILTTTANGYGKLTKVDEYRRTNRGGKGVIAIQTNERN--GDVVGALAVTE 782

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            D+++LVSD GTLIR+ VN IR   R  +GV + +  + E++  +  I +++  +E E T
Sbjct: 783 RDELMLVSDHGTLIRIAVNSIRRTGRNAQGVRLINLGEGEQLAGLALIADTD-EEEGEQT 841

Query: 910 E 910
           +
Sbjct: 842 D 842


>gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
 gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256]
          Length = 901

 Score =  913 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 470/891 (52%), Positives = 622/891 (69%), Gaps = 21/891 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E G++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+   + G    +
Sbjct: 2   QPSEDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ R
Sbjct: 62  PYKKSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL+DL KDTVDF+PNYD S +EP VL AR+PN+LVNG GGIAVGMATN
Sbjct: 122 YTEARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D  +A+IDNP I L+ LM I+ GPDFPTGA++LG+ G ++AYATGRGSI+
Sbjct: 182 IPPHNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMMLGQGGARSAYATGRGSIM 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+   DR+ IV+T IP+QV K+ ++EKIAE  R+KRI  +AD+RDES+R+G R
Sbjct: 242 MRSTHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A+A+V+LNQL+R+T  QS F  NM+A+ G +PE   L  IL AF+ FREEV+
Sbjct: 302 VVIELKRDATAEVVLNQLWRHTPAQSSFPANMLAIRGGRPEMMGLKDILSAFIIFREEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KARDRAH+L+GL +AV+NLDEVVRIIR S +P  AR  L+ R W   DI  
Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I L++     +    T  LSEVQ +AIL+LRL RLT LGRD+I  EL  L  EI+E L 
Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+ R +L G++++EL++V+DE  TPRRT +      ++DED I RE+MVVTV+  GY+K
Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATPRRTLLAPAADGIDDEDLIEREEMVVTVTMDGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PL+ +RAQRRGGKGR+G+  +DED VT+LF+ STHT VLFFS+ G VY+ KVWRLP G
Sbjct: 542 RTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRMKVWRLPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            P  RG+ +IN+L L QGE I+T++P PEDES W  L+V+FAT  G+VRRN +  F  + 
Sbjct: 602 GPATRGRPMINLLPLAQGETISTVLPLPEDESEWGKLHVMFATAKGSVRRNSMDAFTNVP 661

Query: 670 RSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +GKIAMK    D  D ++ V    + +D+LL T+ G+ +RF    +R F  RNS GVRG
Sbjct: 662 SNGKIAMKFEGDDEDDRLIGVALLDESDDVLLATRQGKAIRFAGDDVREFQSRNSTGVRG 721

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + LA+GD+VIS++I+       DER  Y++    +                D+  E  + 
Sbjct: 722 MRLAEGDEVISLSILHRVGTTGDEREAYLRAAPWK----------------DNENEPTLP 765

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            ER  EL  +EQFILTV   G+GK +S+Y++R + R G+GI   D    N  G +VA FP
Sbjct: 766 AERMAELAAREQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARN--GPVVASFP 823

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                Q++LV+D+  LIR+ ++ +RI  R + GV +F  A+ E VVS   I
Sbjct: 824 ATQAHQLMLVTDQAKLIRMGLDSLRIIGRGSAGVRLFDVAEGEHVVSAALI 874



 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTK 701
             +++    +G  + +   ++ +  R G+    +D+      V      TQ + ++L T 
Sbjct: 776 EQFILTVCANGYGKLSSAYEYRRTGRGGQGITNIDNIARNGPVVASFPATQAHQLMLVTD 835

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             + +R  + ++R+  GR S GVR   +A+G+ V+S A++   D D D+           
Sbjct: 836 QAKLIRMGLDSLRII-GRGSAGVRLFDVAEGEHVVSAALIEDGDEDADDGRDVEVASDNP 894

Query: 762 RRLISGD 768
                 +
Sbjct: 895 VSEAPTE 901


>gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
 gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5]
          Length = 867

 Score =  913 bits (2358), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 554/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K     S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+
Sbjct: 2   DQFAKETLPTSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  +++N D  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLNNADATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRATTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S ++
Sbjct: 362 LTRRTIYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           D++   +                 + ++ + +DG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 DMLTRAETENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +DMVVT+SH GYVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  A
Sbjct: 602 FSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F +  + G IA+ LD  D ++        +D++L +  G+ VRF  +
Sbjct: 659 TSLGTVKKTPLEAFSRPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G QVI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQQVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   +EQ +LT +E G+GKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 590 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
 gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01]
          Length = 922

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/942 (42%), Positives = 553/942 (58%), Gaps = 108/942 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A++DN ++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLTEVIDGCLALMDNAELTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYV 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R    +E       R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T +QS+F +N+VAL   +P+   L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVE 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  YLS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADSCRPEGLDAQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E + IL++  RL+ +I++EL  VK E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LALIGELIRILTNPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y AQRRGGKG+S   ++DED+V  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN---------------- 644
            + + +P  S  ARG+ L+N+L L++GERIT ++    +    +                
Sbjct: 603 LRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGVVIEG 662

Query: 645 --------------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                                       ++  AT  G V++  L  F +   +G IA+KL
Sbjct: 663 EATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKL 722

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +  D +++        +++L +  G+ +RF  S +R   GR + GVRG+ L K  Q+ISM
Sbjct: 723 EEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQQLISM 781

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I                                                          
Sbjct: 782 LI-----------------------------------------------------PESGA 788

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILT SE+GFGKRT    F    R G+G+ A   S+ N  G LV    V D ++I+L+SD
Sbjct: 789 QILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISD 846

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +GTL+R  V+E+  + R T+GV +   AKDE +V +ER++E 
Sbjct: 847 QGTLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQEP 888



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+ PL  +   R  G     + + + D +    I      V+ FS  G V +  
Sbjct: 696 TAFGTVKKTPLVQFSRPRSAG--LIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFA 753

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++      ARG   +  + L + +++ +++         +   ++ A++ G  +R  L
Sbjct: 754 ESKVRTMGRTARG---VRGMRLGKDQQLISML------IPESGAQILTASERGFGKRTGL 804

Query: 663 SDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             F +  R G+  + +   +   +++         +I+L +  G  VR  +  +   +GR
Sbjct: 805 GKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRVDEVSS-SGR 863

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           N+ GV  I LAK + ++ +  V       ++ +   +  +           +      +
Sbjct: 864 NTQGVTLIKLAKDETLVGLERVQEPTPVEEDELVEGEEGAEVAENADAPVADAEEGSEE 922


>gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
 gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621]
 gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048]
          Length = 823

 Score =  912 bits (2357), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/890 (42%), Positives = 549/890 (61%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4]
 gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603]
 gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4]
 gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196]
 gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603]
          Length = 823

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/890 (42%), Positives = 549/890 (61%), Gaps = 86/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELAEVKERFNDKRRTEITIGGMEAIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V +
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAK 806


>gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
 gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51]
          Length = 921

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/947 (42%), Positives = 559/947 (59%), Gaps = 106/947 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALVDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+   W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDADDTVLE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEAEEVDEEDGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GRN+ GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRNARGVRGMKLGKGQQIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V++ ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVHEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  +
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEDELDD 893



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L    +    +   + +    R               + +     +    ++  +E+ +
Sbjct: 482 ILEQIGELIRILNSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERV 541

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S  G+ K      ++   R GKG  AT V   + I  L      N +  ++L S KG
Sbjct: 542 VTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHL---LVANSHATLLLFSSKG 598

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRES------EIVDEAESTE 910
            +      EI  ASRA +G   V +    + ER+ ++ ++         ++ +E E  +
Sbjct: 599 KVYWKKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQVDLEALQQNADLDEELEDAD 657



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 92/245 (37%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G++I +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRNARG---VRGMKLGKGQQIISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + ++      +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVHEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  +     D  + +        +  +   D      
Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEDELDDMVEAGEEGVEAEVPDNDEAAGAE 916

Query: 775 LKNDS 779
                
Sbjct: 917 EAPQE 921


>gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
 gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O]
          Length = 903

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/905 (43%), Positives = 561/905 (61%), Gaps = 42/905 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---ADKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  +              
Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPV--------- 713

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                                D +      ++   + +         T+         + 
Sbjct: 714 --------------------LDENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADG 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   +  +LTV+E G+GKRT   ++    R  +G+ +  VS+ N  G++V   
Sbjct: 754 DQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN--GSVVGAV 811

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V D D+ ++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E E  D 
Sbjct: 812 QVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETDL 871

Query: 906 AESTE 910
            E  E
Sbjct: 872 PEGEE 876



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692
                   N+  V+  T++G  +R  LS++    R  +  + +        ++       
Sbjct: 756 VVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED 815

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++ ++ T  G  VR  ++ +    GRN+ GV  I  A+ + V+ +  +   +       
Sbjct: 816 GDEFMMITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETDLPEG 874

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSV 781
                  A  +       +  +       
Sbjct: 875 EEADATEATEQAPQAQDPQADNDDAADQE 903


>gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48]
 gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas
           entomophila L48]
          Length = 920

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/950 (42%), Positives = 556/950 (58%), Gaps = 106/950 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNSDITVDELMQFIPGPDFPTAGLINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIVVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINIVALIDGRPRLLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             +G  YLS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I++   D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILDARHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
            K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 LKTYDIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQHADPEEELEDGDDGVIE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GELVEVEEADEEDGDTPEWAAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GR + GVRG+ L KG ++ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQRIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L     V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLTGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           TL+R  V E+    R T+GV +   A DE +V VER++E    +  E  E
Sbjct: 847 TLVRTRVGEVSSLGRNTQGVTLIKLAADETLVGVERVQEPSEEELDELIE 896



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 15/244 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G+RI +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRTARG---VRGMKLGKGQRIISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINR--SGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R   G IAM    R+ +L+      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLTGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I LA  + ++ +  V     +  + +       A    +  D      
Sbjct: 858 SL-GRNTQGVTLIKLAADETLVGVERVQEPSEEELDELIETDEEGAPLDAVGEDNAGAEE 916

Query: 775 LKND 778
              +
Sbjct: 917 APQE 920


>gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
 gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002]
          Length = 860

 Score =  912 bits (2356), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/903 (42%), Positives = 556/903 (61%), Gaps = 76/903 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+    + 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLTCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + +I+ +P P  A++ELM RSW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIALIKAAPTPPIAKQELMSRSWDSSLVREMLSRAETDNASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERISAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDEGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   E 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEGESEI 842

Query: 907 EST 909
           +S 
Sbjct: 843 DSD 845


>gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
 gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2]
          Length = 914

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 479/918 (52%), Positives = 630/918 (68%), Gaps = 16/918 (1%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + E+E           SV+I  E++ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENEDEMPPMRPAYDGPSVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+  +K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L L++G
Sbjct: 61  RRIIYSMYEKGITADKSYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A +L DDL KDTVDF  NYDG  +EP VL ARYPN
Sbjct: 121 QGNFGSMDGDGAAAMRYTESRLDKVAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+ID+PD+ ++ ++E I  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RTG + AY  GRGS+++R  +++E+   DR  IV+ EIPYQVNKA M++KIAE  REK+I
Sbjct: 241 RTGARKAYIEGRGSVIVRAKTNVEEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+A+V+LNQL+R+T +Q+ F  NM+ALNG KPE+ T
Sbjct: 301 EGIAHVQDESDRNGVRVVIELKRDATAEVVLNQLFRFTPMQTYFGCNMLALNGGKPEQLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L   L  F+ FRE+VV RRT + L KAR+RAHVL GLA+AV N+DE+V  IR S +  TA
Sbjct: 361 LRAFLAYFIDFREDVVARRTAFELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R +LM R W A DI + I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  ++
Sbjct: 421 REKLMTRKWPAQDILEYIKLIDDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEV 480

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  L  +I+E L+IL SR R++ II+ EL  V+D    PRRT IV+   DMEDED I
Sbjct: 481 TDELQELAGKIREYLEILGSRERIMQIIRDELTEVRDLFAVPRRTEIVDWSGDMEDEDLI 540

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            +EDMVVTV+  GY+KR  L+ +RAQRRGGKG S +  ++ED VT LF+ +THT +LFF+
Sbjct: 541 EKEDMVVTVTSGGYIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFT 600

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VYK K WRLP+GS  A+GKA++NIL +  G  I  IMP    E  W++L VVFAT 
Sbjct: 601 TDGMVYKLKTWRLPLGSRTAKGKAIVNILPIPPGVSIAAIMPVDRPEEEWDDLQVVFATS 660

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPI 710
            G VRRNKLSDF  + R+GKIAMK +       +++    + ++D++L T  G+ +RFP 
Sbjct: 661 AGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTDSGRAIRFPA 720

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +RVF  R+SVGVRGI L   D+V+SM+I+ H  A+ +ER  Y+K     RR ++G  +
Sbjct: 721 TDVRVFNSRSSVGVRGIKLQGDDKVVSMSIIRHFKAEAEERAAYLK----MRRAMAGLAD 776

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +  +   + +V G IS+ER  E+   E  ILT++ +G GK +SS+D+ +  R G G+ A 
Sbjct: 777 DAETDDEEEAVAGAISQERYAEMSAAENLILTITAQGSGKLSSSHDYPVRGRGGMGVAAM 836

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D  K    GALV  FPV  +DQI+LV+  G  IRVP+  I   SR   GV +F T K E 
Sbjct: 837 D--KAMRGGALVTSFPVEISDQIMLVTSTGQSIRVPIEGISFRSRGAGGVKVFDTGKGET 894

Query: 891 VVSVERIRESEIVDEAES 908
           VVSV  I +    +E   
Sbjct: 895 VVSVAWIADQGDAEEDAD 912


>gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA]
 gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA]
 gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400]
          Length = 857

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/890 (43%), Positives = 552/890 (62%), Gaps = 58/890 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+    T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK 
Sbjct: 3   EQSLNKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+AA YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+++ AH LL+DL K+TVD  PNYDGS  EP+VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A I+NP+I  + L+ +I GPDFPTG  I GR GI   Y TGRG + +
Sbjct: 183 PPHNLTEVINGIIATIENPNISFEELLALIPGPDFPTGGFIYGREGILQGYRTGRGIVQM 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE     +R+ I+VTEIPYQVNKA ++ KIAELVREK++  I+D+RDESDR G R
Sbjct: 243 RARASIETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKR  +  VILN LY+ T +Q+ F +NM+A+   +P   TL   +  F+  R E+V
Sbjct: 303 IVIDLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPRVLTLRDAIGHFIDHRREIV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L G  IA+  LD V+ +IR S  P  A+  LM   ++  +   
Sbjct: 363 TRRTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLR 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            + L    +        + L+EVQ + IL LRL RLTGL RD I  E + +   I    +
Sbjct: 423 KMGL-PLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S + +L II  EL  +K++    RRT IV+   ++  ED IV ED+VVTVSH GY+K
Sbjct: 482 ILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +S YR+QRRGGKG++G+  ++EDFV  LF+ S+   +LFF+  G VY+ KV+ +P G
Sbjct: 542 RTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               RGKA++N+L+L + E+IT I+     +   ++  ++ AT+ G V+++ L ++  I 
Sbjct: 602 GRATRGKAIVNLLNLQENEQITAILSVKGFD---DDRNIIMATRLGVVKKSPLREYANIR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+ LD  D++++V       D+LL +K G+ +RF     R   GR S GVRG+SL
Sbjct: 659 SGGIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPM-GRVSRGVRGMSL 717

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D VI M I+                                                
Sbjct: 718 EDDDVVIGMEIINPN--------------------------------------------- 732

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     I TV+E GFGKRT   ++R+ +R GKGI     ++ N  G +V +  V D
Sbjct: 733 -----ATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTD 785

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + ++L++D+G ++R+PV +  +  R T+GV + +  ++ER+V+V ++ E
Sbjct: 786 ENDLMLITDQGKILRIPVAQFSVIGRNTQGVRLMTAEQNERIVAVAKLAE 835



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A   E +     +         + +E    +  + +    +E   ++  ++E  +
Sbjct: 472 ILKYIARLKEILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVV 531

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +TVS  G+ KRT+   +R   R GKG       + + +  L   F  +  D ++  +D G
Sbjct: 532 VTVSHTGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHL---FVASSKDFMLFFTDAG 588

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            + ++ V EI    RAT+G   V + +  ++E++ ++  ++  +  
Sbjct: 589 KVYQIKVYEIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDD 634


>gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7]
          Length = 864

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/904 (43%), Positives = 547/904 (60%), Gaps = 79/904 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE RL K AH LL 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EV++GC+ 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR- 263
            + NPD  ++ L+E+I  PDFPTG +I G +G++  Y TGRG +++R  +H E       
Sbjct: 181 CLRNPDCSIEELIELIPAPDFPTGGIIYGMSGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + I+V  +PYQVNK  + EKIA+LV +KRI  I+D+RDESD+ G R+VIELKRG   +VI
Sbjct: 241 QAIIVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVI 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P    L  I++ F+  R EVV RRT + L KAR+R
Sbjct: 301 LNNLYKNTQLQDTFGMNMVALVDGQPRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD------- 436
            HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++   DD       
Sbjct: 361 GHVLEGLAVALANIDDFITIIKAAPTPPVARQELMARSWDSSLVREMLVRADDGVTPGGR 420

Query: 437 ---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                      + +  DG   LSEVQ + IL +RL RLTGL +D I  E   +   I + 
Sbjct: 421 AAYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADL 480

Query: 488 LDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           LDIL+   R+  II  ELL++K E        RR+ I     +++ ED I   DMVVT+S
Sbjct: 481 LDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTLS 540

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K  PLS YRAQ+RGG+G+    M++ D+V  LFI +TH  +L FS  G VY  KV
Sbjct: 541 QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYWLKV 600

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           W +P GS  +RG+ ++N+  L   E+IT ++P  E      + YV  AT  G V++  LS
Sbjct: 601 WEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFS---EDHYVFMATSRGTVKKTPLS 657

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           DF    ++G IA+ LD  D ++  +     +D++L +  G+ VRF  + +R   GR + G
Sbjct: 658 DFSNPRKAGIIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPM-GRTARG 716

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L +G  VI+M +                                           
Sbjct: 717 VRGMMLEEGQVVIAMLV------------------------------------------- 733

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       + Q +LT +E GFGKRTS  ++    R  KG+ A   S  N  G +V 
Sbjct: 734 ---------AGDETQSVLTATENGFGKRTSIVEYTRHGRGTKGMIAIQTSARN--GKVVG 782

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V  +D+I+L++  G L+R  V+EIR   RAT+GV + S   +  +  V R+ ES+  
Sbjct: 783 AVLVRPSDEIMLITTGGVLVRTRVSEIREMGRATQGVTLISVDDNSMLSGVRRVVESDAD 842

Query: 904 DEAE 907
           D+ E
Sbjct: 843 DDVE 846



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 132/398 (33%), Gaps = 31/398 (7%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    S+I+     +D        D  + L
Sbjct: 480 LLDILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPMDMVVTL 539

Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           S  QT  I    L+      R    +        +  + L I ++   LL    +  +  
Sbjct: 540 S--QTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYW 597

Query: 509 KDEL------DTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLS 554
                        R   IV     ++DE             +  V   +  G VK+ PLS
Sbjct: 598 LKVWEVPQGSRNSRGRPIVNMFPLVDDEKITVVLPVKEFSEDHYVFMATSRGTVKKTPLS 657

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +   R+ G     V + D DF+    +      V+ FS  G   +     +      AR
Sbjct: 658 DFSNPRKAG--IIAVALDDNDFLIGADLTDGAHDVMLFSDSGKAVRFDENDVRPMGRTAR 715

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   + +            +      +      V+ AT++G  +R  + ++ +  R  K 
Sbjct: 716 GVRGMML--------EEGQVVIAMLVAGDETQSVLTATENGFGKRTSIVEYTRHGRGTKG 767

Query: 675 AMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            + +       +++        ++I+L T  G  VR  +S IR   GR + GV  IS+  
Sbjct: 768 MIAIQTSARNGKVVGAVLVRPSDEIMLITTGGVLVRTRVSEIREM-GRATQGVTLISVDD 826

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +  +  V+ +DAD D  +           +   ++
Sbjct: 827 NSMLSGVRRVVESDADDDVEVLIDNVDEVVDDVDDKES 864


>gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271]
 gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271]
          Length = 823

 Score =  911 bits (2355), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 551/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
 gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp]
          Length = 922

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/942 (42%), Positives = 553/942 (58%), Gaps = 108/942 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DGC+A+IDN D+ +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLSEVIDGCLALIDNADLTVDDLMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R    +E       R+Q+VVTE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARVEVEDIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   DV+LN LY  T +QS+F +N+VAL   +P+   L  +L+ FV  R EV
Sbjct: 303 RVVIELRRGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQPKTMNLKDMLEVFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVE 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             +G  YLS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E + IL+S  RL+ +I++EL  VK E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LSLIGELIRILTSPERLMEVIREELEKVKAEFGDARRTEIIASRQDLTIADLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y AQRRGGKG+S   ++DED+V  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN---------------- 644
            + + +P  S  ARG+ L+N+L L++GERIT ++    +    +                
Sbjct: 603 LRTFEIPEASRAARGRPLVNLLPLDEGERITAMLQIDLEALQQSAGADEDLDDEGLVIEG 662

Query: 645 --------------------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                                       ++  AT  G V++  L  F +   +G IA+KL
Sbjct: 663 EATEVVEAEEVEEVEGETPELVAEPTGAFIFMATAFGTVKKTPLVQFSRPRSAGLIALKL 722

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +  D +++        +++L +  G+ +RF  S +R   GR + GVRG+ L K  ++ISM
Sbjct: 723 EEGDTLIAAAITDGAKEVMLFSDAGKVLRFAESKVRTM-GRTARGVRGMRLGKDQRLISM 781

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I                                                          
Sbjct: 782 LI-----------------------------------------------------PESGA 788

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ILT SE+GFGKRT    F    R G+G+ A   S+ N  G LV    V D ++I+L+SD
Sbjct: 789 QILTASERGFGKRTGLGKFPRRGRGGQGVIAMVTSERN--GKLVGAIQVQDGEEIMLISD 846

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +GTL+R  V+E+  + R T+GV +   AKDE +V +ER++E 
Sbjct: 847 QGTLVRTRVDEVSSSGRNTQGVTLIKLAKDETLVGLERVQEP 888



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 92/239 (38%), Gaps = 15/239 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+ PL  +   R  G     + + + D +    I      V+ FS  G V +  
Sbjct: 696 TAFGTVKKTPLVQFSRPRSAG--LIALKLEEGDTLIAAAITDGAKEVMLFSDAGKVLRFA 753

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++      ARG   +  + L + +R+ +++         +   ++ A++ G  +R  L
Sbjct: 754 ESKVRTMGRTARG---VRGMRLGKDQRLISML------IPESGAQILTASERGFGKRTGL 804

Query: 663 SDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             F +  R G+  + +   +   +++         +I+L +  G  VR  +  +   +GR
Sbjct: 805 GKFPRRGRGGQGVIAMVTSERNGKLVGAIQVQDGEEIMLISDQGTLVRTRVDEVSS-SGR 863

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           N+ GV  I LAK + ++ +  V       ++ +   +  +           +      +
Sbjct: 864 NTQGVTLIKLAKDETLVGLERVQEPTPVEEDELLEGEEGAEVADSADAPIVDAEEGSEE 922


>gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49]
          Length = 851

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/904 (42%), Positives = 557/904 (61%), Gaps = 77/904 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLS 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLNNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM ++W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKAWDSSLVREMLTRAESENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVYWIKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI++ +                                              
Sbjct: 717 MQLEDGQQVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E  D  
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAEEGD-G 841

Query: 907 ESTE 910
           E+ E
Sbjct: 842 EADE 845


>gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003]
 gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003]
          Length = 862

 Score =  911 bits (2354), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/903 (42%), Positives = 553/903 (61%), Gaps = 76/903 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NPD  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+    + 
Sbjct: 181 LLKNPDASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   + 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEAEGDL 842

Query: 907 EST 909
           E  
Sbjct: 843 EGD 845



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 14/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PL  +   R   KG   V + D D++    I      V+ F
Sbjct: 633 FSADKFVFMATALGTVKKTPLEAF--SRPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLF 690

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   +  + L  G+ +  ++   +         V+ AT
Sbjct: 691 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 742

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  ++++ +  R   G IA++      ++++      E  I+L T  G  +R  
Sbjct: 743 ENGFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVVAATLVDPEAQIMLITTTGVLIRTR 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  ISL +G ++  +  V  A+A+ D          +      G  
Sbjct: 803 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEAEGDLEGDAEGPAESGNGGEDGGA 861


>gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3]
 gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3]
          Length = 823

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/894 (42%), Positives = 551/894 (61%), Gaps = 86/894 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L   DQV+ M IV                                             
Sbjct: 692 ITLGDEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G LVAV  
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKTCNITDKN--GKLVAVKS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V   + I+L++  G +IR+PV++I    R T+GV +     ++ V +V + ++ 
Sbjct: 757 VTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLEDEQEVATVAKAQKD 810


>gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619]
 gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619]
          Length = 923

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 407/947 (42%), Positives = 558/947 (58%), Gaps = 106/947 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT  +I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPEVTVDELMQFIPGPDFPTAGIINGRQGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S IE       R+QIVVTE+PYQ+NKA ++EKIAELV++K+I  I +LRDESD+ G 
Sbjct: 243 RARSEIEDIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG   +V+LN LY+ T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RIVIELRRGEVPEVVLNNLYQQTQLQSVFGINVVALIDGRPRVLNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  AR  L+  +W +S ++
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQ 422

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     S             DG  YLS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 VMVERAGADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + ILSS  RL+ +I++EL +++ E    RRT I+    D+   D I  E+ VV
Sbjct: 483 LEQIGELIRILSSAERLMEVIREELEAIRAEYGDARRTEILNASHDLNYGDMIPEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PLS Y+AQRRGGKG+S   ++DED++  L + ++H ++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPF------------------------ 636
           +K + +P  S  ARG+ L+N+L L +GERIT ++                          
Sbjct: 603 KKTYEIPEASRAARGRPLVNLLPLEEGERITAMLQIDLEALQQSADPDEELEDGDEGVIE 662

Query: 637 ----------------PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                           PE  +     Y+  AT  G V++  L  F +   +G IA+KL  
Sbjct: 663 GEVVEAEEIDEEEGDTPEWVAEPTGAYIFMATASGTVKKTPLVQFARPRSNGLIALKLKE 722

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +++        ++++ +  G+ +RF  S +R   GR + GVRG+ L KG Q+ISM I
Sbjct: 723 GDTLIAAAITDGAKEVMMFSDAGKVIRFAESVVREM-GRTARGVRGMKLGKGQQIISMLI 781

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                                                                      I
Sbjct: 782 -----------------------------------------------------PESGAQI 788

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           LT SE+GFGKRT    F    R G+G+ A      N  G L+    V + ++I+L+SD+G
Sbjct: 789 LTASERGFGKRTPLSKFPRRGRGGQGVIAMGTKGRN--GLLIGAIQVQEGEEIMLISDQG 846

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           TL+R  V E+   SR T+GV +   A DE +V +ERI+E    +  E
Sbjct: 847 TLVRTRVGEVSSLSRNTQGVTLIKLAADETLVGLERIQEPSEEELDE 893



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 93/247 (37%), Gaps = 15/247 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + +++ D +    I      V+ FS  G 
Sbjct: 689 YIFMATASGTVKKTPLVQFARPRSNG--LIALKLKEGDTLIAAAITDGAKEVMMFSDAGK 746

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      ARG   +  + L +G++I +++         +   ++ A++ G  
Sbjct: 747 VIRFAESVVREMGRTARG---VRGMKLGKGQQIISML------IPESGAQILTASERGFG 797

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  LS F +  R G+  + + ++      +      +  +I+L +  G  VR  +  + 
Sbjct: 798 KRTPLSKFPRRGRGGQGVIAMGTKGRNGLLIGAIQVQEGEEIMLISDQGTLVRTRVGEVS 857

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             + RN+ GV  I LA  + ++ +  +     +  + +        +        ++   
Sbjct: 858 SLS-RNTQGVTLIKLAADETLVGLERIQEPSEEELDELVGADEEGVELDAPEAADDDNAG 916

Query: 775 LKNDSSV 781
            +     
Sbjct: 917 AEEAPQE 923


>gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001]
 gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001]
          Length = 862

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/903 (42%), Positives = 553/903 (61%), Gaps = 76/903 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+    + 
Sbjct: 181 LLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E   + 
Sbjct: 783 VDPEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAEAEGDV 842

Query: 907 EST 909
           E  
Sbjct: 843 EGD 845


>gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli]
          Length = 878

 Score =  911 bits (2353), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/908 (44%), Positives = 578/908 (63%), Gaps = 71/908 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R   G N+ GVR
Sbjct: 664 NRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+V+S+ +     A                                       
Sbjct: 723 GIRLGEGDKVVSLIVPRGDGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILT ++ G+GKRT+  ++   +R+ KG+ +  V++ N  G +V   
Sbjct: 744 --------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERN--GLVVGAV 787

Query: 846 PVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            V+D DQ   I++++D GTL+R  V+EI I  R T+GV++  TA+DE VV ++R+ E   
Sbjct: 788 QVDDCDQIMMIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVD 847

Query: 903 VDEAESTE 910
            ++ ++ +
Sbjct: 848 EEDLDTID 855



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 18/246 (7%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 645 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 703 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 753

Query: 658 RRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPIS 711
           +R  ++++   +R   G I++K+  R+ ++       + D    I++ T  G  VR  +S
Sbjct: 754 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMIMMITDAGTLVRTRVS 813

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            I    GRN+ GV  I  A+ + V+ +  V     + D              +      +
Sbjct: 814 EI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVD 872

Query: 772 ITSLKN 777
               + 
Sbjct: 873 DEPEEE 878


>gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901]
 gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901]
          Length = 856

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 404/909 (44%), Positives = 553/909 (60%), Gaps = 71/909 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK +H LL DL K+TVDF PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+ +I+NP   +D L+E I GPDFPTG +I GR GI  AY TGRG I +R  
Sbjct: 186 NLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGIINGRAGILMAYRTGRGRIYVRAK 245

Query: 254 SH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +  +     +R+ I++ EIPYQVNKA ++EKIAELV++K+I  I+++RDESD+ G RVVI
Sbjct: 246 AEVVTDEKTNRDTILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   DV+LN LY  T LQS+F +N+VAL   +P+   L  +L+ F++ R EVV RR
Sbjct: 306 EIKRGDMGDVVLNNLYAQTQLQSVFGINIVALVDDQPKVLNLKQMLEHFISHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R HVL GLA+A+AN+DEV+ +I+ S  P  AR  L+ R W  + I   ++
Sbjct: 366 TVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNTISQFLE 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  +LS  Q +AILELRL RLTG+  D +  E      +I
Sbjct: 426 RAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYEEKLQQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L+ILS+  RL+ +I++EL +V  E    RRT I     D+  ED I  ED VVT+SH
Sbjct: 486 SEYLEILSNAVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTVEDLINEEDRVVTISH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PL  Y+AQRRGG G++   ++DEDFV  L I +TH  +L F++ G V+  KV+
Sbjct: 546 GGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYILCFTNAGKVFWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+   Q+RG+ ++N+L L +GERIT+I+P  E +    + ++V AT  G V++  LS 
Sbjct: 606 QIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFD---EDRFIVMATSQGTVKKTPLSQ 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G  A+ L   D ++       + DI+L +  G+  RF    +R   GR S GV
Sbjct: 663 FARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEEQVRSM-GRTSRGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI +A   +VI+M I                                            
Sbjct: 722 RGIRMADEHRVIAMVIPADGGK-------------------------------------- 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +LTVSE G+GKRT   DF    R  +G+ A  VS+ N  G LV  
Sbjct: 744 ---------------VLTVSENGYGKRTDVDDFPTKGRGSQGVIAMQVSERN--GGLVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE---SE 901
             + D D+++++SD+GTL+R   +E+ + SR T+GV +    + E +V V RI E    +
Sbjct: 787 VQIFDGDELMMISDQGTLVRTRGDEVSLLSRNTQGVRLIKVRESEHIVGVARIAEQLDQD 846

Query: 902 IVDEAESTE 910
             DE ES E
Sbjct: 847 ADDETESNE 855


>gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 930

 Score =  910 bits (2352), Expect = 0.0,   Method: Composition-based stats.
 Identities = 465/900 (51%), Positives = 630/900 (70%), Gaps = 10/900 (1%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  
Sbjct: 1   MTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA
Sbjct: 61  GDVMGKYHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           + FLLDD+ +DTVDF+PNYD S  EP VL A +PN+LVNG  GIAVGMATNIPTHN GEV
Sbjct: 121 SSFLLDDIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R  + IE+
Sbjct: 181 IDATLAMIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              DR+ I++TEIPYQVNKA + EKIA+LVR K I  I+D+RDESDR G RVVIELKR A
Sbjct: 241 IRKDRQAIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LNQLYR+T LQ+ FS NM+AL+  KP    L  IL+AF+ FREEV++RR ++ LN
Sbjct: 301 TPDVVLNQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLN 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KARDR H+LVGL +AVAN+DEV+ +IR +P+  TAR  LM R W+AS++  L++LI D  
Sbjct: 361 KARDRGHLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEG 420

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             I  DG + L+E Q R ILELRL RLTGL R+ I+ EL  +  +I E L I+ SR R +
Sbjct: 421 NVI-IDGKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRM 479

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++++ELL+ + E+ TPR T I + L D  DE  I    MVVT++  G++KR PL V+R+
Sbjct: 480 EVMREELLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRS 539

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q RGG+GR+    R +D +   F   TH  V+FFSS G  Y+ KVW LP  +P A+G+AL
Sbjct: 540 QNRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRAL 599

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L     + IT ++P P+DE  W +L++ FAT  GNVRRN+LSDF  I  SG IAMKL
Sbjct: 600 VNLLPELGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKL 659

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVI 736
           D  D ++ V TC +  D+ L TK  +C+RF I+   +RVFAGR S GVRGI L +GD VI
Sbjct: 660 DEGDSLIGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVI 719

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLI------SGDTEEITSLKNDSSVEGNISEERC 790
           S+ I+ H DA  +ER  Y++  +A+RR        S + E ++  +    + G++++ER 
Sbjct: 720 SLCILNHVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERF 779

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +EL+ +E+ +LTV++ GFG+R+S+YD+R+S R G+GI     S       +V   P  D 
Sbjct: 780 EELEQQEEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDG 839

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             ++LV+D G LIR+PV+++R+ SR   GV +F     E V+ V  + E +  +E ++ E
Sbjct: 840 TDVMLVTDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICVFPVLEDDT-EEGDTDE 898



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCV 706
           T  G  RR+   D+    R G+    +         E++         D++L T  G+ +
Sbjct: 793 TDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRLI 852

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R P+S +RV + R + GV    L   + VI +  VL  D +  +     +  +       
Sbjct: 853 RLPVSQVRVMS-RQASGVTLFRLNDTETVICVFPVLEDDTEEGDTDEGSEAGAKVIGEAG 911


>gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
 gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15]
          Length = 857

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/900 (43%), Positives = 550/900 (61%), Gaps = 58/900 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+    T+V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK 
Sbjct: 3   EQTLNKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+++ AH LL+DL K+TVD   NYDGS  EP+VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEQLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A I NP I  + L+ ++ GPDFPTG  I GR GI   Y TGRG + +
Sbjct: 183 PPHNLSEVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIYGREGILQGYRTGRGIVQM 242

Query: 251 RGVSHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE     +R+ IVVTEIPYQVNKA ++ KIAELVREK++  I+D+RDESDR G R
Sbjct: 243 RARASIETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKR  +  VILN LY+ T +Q+ F +NM+A+   +P+  TL   +  F+  R E+V
Sbjct: 303 IVIDLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGRPKVLTLQDAIGHFIDHRREIV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L G  IA+  LD V+ +IR S  P  AR  LM   ++  +   
Sbjct: 363 TRRTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQ 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            + L    +        + L+EVQ + IL LRL RLTGL RD I  E   +   I    +
Sbjct: 423 KMGL-PLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S + +L II  EL  +K++    RRT IV+   ++  ED IV ED+VVTVSH GY+K
Sbjct: 482 ILASEAEILKIIVGELRELKEKFGDERRTEIVDRSAEISLEDTIVEEDVVVTVSHTGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +S YR+QRRGGKG++G+  ++EDFV  LF+ S+   +LFF+  G VY+ KV+ +P G
Sbjct: 542 RTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVYEIPEG 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               RGKA++N+L+L + E+IT I+     +   +   ++ AT+ G V+++ L ++  I 
Sbjct: 602 GRATRGKAIVNLLNLQENEQITAILSVKGFD---DERNILMATRLGVVKKSPLREYANIR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+ LD  D++++V       D+LL ++ G+ +RF     R   GR S GVRG++L
Sbjct: 659 SGGIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPM-GRVSRGVRGMTL 717

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D VI M ++                                                
Sbjct: 718 EDDDVVIGMEVINP---------------------------------------------- 731

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     I TV+E GFGKRT   ++R+ +R GKGI     ++ N  G +V +  V D
Sbjct: 732 ----SATGSTIFTVTENGFGKRTELDEYRVQSRGGKGIITIKTTERN--GCVVDIMQVTD 785

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + ++L++D+G ++R+PV    +  R T+GV + +  ++ER+V+V ++ E +  DE   +
Sbjct: 786 ENDLMLITDQGKILRIPVAPFSVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEGPDS 845



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 12/232 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E  ++  + LG VK+ PL  Y   R GG     +   +ED +  + +      VL  
Sbjct: 631 FDDERNILMATRLGVVKKSPLREYANIRSGGIIAVNLD--EEDKLIAVALTDGRQDVLLA 688

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +            +RG   + +      E    ++       S     +   T
Sbjct: 689 SRNGKSIRFHEEDARPMGRVSRGVRGMTL------EDDDVVIGMEVINPSATGSTIFTVT 742

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L ++   +R GK  + + + +    V      T END++L T  G+ +R P
Sbjct: 743 ENGFGKRTELDEYRVQSRGGKGIITIKTTERNGCVVDIMQVTDENDLMLITDQGKILRIP 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           ++      GRN+ GVR ++  + ++++++A +   D   +          A+
Sbjct: 803 VAPF-SVIGRNTQGVRLMTAEQNERIVAVAKLAEKDEGDEGPDSGDDLPEAE 853


>gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis]
 gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50]
          Length = 877

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/896 (42%), Positives = 542/896 (60%), Gaps = 78/896 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YD + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K AH LL 
Sbjct: 61  YHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HNL EVVDGC+ 
Sbjct: 121 DIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR- 263
            + NP+  +D L+E+I  PDFPTG VI G TG++  Y TGRG +++R  +H E       
Sbjct: 181 CLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRVIMRAKTHFEDMEKGNR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           + IVV  IPYQVNK  + E+IAELV +K+I  I+D+RDESD+ G R+VIELKRG   +V+
Sbjct: 241 QAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +N+VAL   +P    L  +++ F+  R EVV RRT + L KAR+R
Sbjct: 301 LNNLYKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  AR+ELM RSW++S +++++  +D        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPVARQELMARSWDSSLVREMLARVDGDAAGGVA 420

Query: 436 -------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                     Y +  DG   LSE Q + IL +RL RLTGL +D I  E   +   I + L
Sbjct: 421 AFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLL 480

Query: 489 DILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           DIL+   R+  II +EL ++K E        RR  I     +++ ED I   DMVVT+SH
Sbjct: 481 DILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSH 540

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K  PLS YR+Q+RGG+G+    M++ D+V  LFI +TH  +L FS+ G VY  KVW
Sbjct: 541 GGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVW 600

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G+  +RGK ++N+  L  GE++T ++P  E      + YV  AT  G V++  LSD
Sbjct: 601 EVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFS---EDHYVFMATSRGTVKKTPLSD 657

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F    ++G IA+ LD  D ++  +    ++D++L +  G+ VRF  + +R   GRN+ GV
Sbjct: 658 FSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPM-GRNARGV 716

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G  VI++ +                                            
Sbjct: 717 RGMMLEEGQTVIALLV-------------------------------------------- 732

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      + Q +LT +E G+GKRT   ++    R  KG+ A   S  N  G +V  
Sbjct: 733 --------AGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRN--GRVVGA 782

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V  +D+I+L++  G L+R  V EIR   RAT+GV + S      +  V R+ ES
Sbjct: 783 VLVMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVES 838



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 78/190 (41%), Gaps = 16/190 (8%)

Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + L      + D++I      MA +                +S + + I  +        
Sbjct: 452 MRLQRLTGLEQDKIIGEYKDVMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDT 511

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             + +E N +E   ++L      ++T+S  G+ K     ++R   R G+G +AT + + +
Sbjct: 512 RRAEIEVNATELDTEDLITPMDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKEND 571

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVS 893
            +  L   F  N +D ++  S++G +  + V E+   +R ++G  I +    A  E+V  
Sbjct: 572 WVDQL---FIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGEKVTV 628

Query: 894 VERIRESEIV 903
           V  ++E    
Sbjct: 629 VLPVKEFSED 638



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 70/410 (17%), Positives = 135/410 (32%), Gaps = 27/410 (6%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A  + +  II        A      +    ++I+     +D        D  + L
Sbjct: 479 LLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTL 538

Query: 450 S-----EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           S     + Q  +    +     G     ++       + I    D L   S    +   +
Sbjct: 539 SHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLK 598

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVY 556
           +  V       R   IV      + E             +  V   +  G VK+ PLS +
Sbjct: 599 VWEVPQGTRNSRGKPIVNMFPLADGEKVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDF 658

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R+ G     +   D D++    +      V+ FS  G   +     +      ARG 
Sbjct: 659 SNPRKAGIIAVDLD--DGDYLIGADLTDGKHDVMLFSDAGKAVRFDENDVRPMGRNARG- 715

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
             +  + L +G+ +  ++   +         V+ AT++G  +R  ++++ +  R  K  +
Sbjct: 716 --VRGMMLEEGQTVIALLVAGD-----ETQSVLTATENGYGKRTPITEYTRHGRGTKGMI 768

Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +        ++        ++I+L T  G  VR  ++ IR   GR + GV  IS+  G 
Sbjct: 769 AIQTSSRNGRVVGAVLVMPSDEIMLITTGGVLVRTRVAEIREM-GRATQGVTLISVDDGS 827

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            +  +  V+ +DAD D+                 DT         +    
Sbjct: 828 SLSGVRRVVESDADADDEDGGEDLGEEGGDQGGDDTGAQGKDSEPTEPTE 877


>gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
 gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768]
          Length = 918

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/921 (40%), Positives = 551/921 (59%), Gaps = 28/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   +    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEVSDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E +VS+ER+ E E   E    
Sbjct: 885 ETLVSLERVAEDESESELSDA 905



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 104/271 (38%), Gaps = 40/271 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEVSDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +S+  V   +++ +     +     +    +
Sbjct: 888 VSLERVAEDESESELSDASVISSVTEPEAEN 918


>gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
 gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65]
          Length = 868

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/907 (42%), Positives = 552/907 (60%), Gaps = 68/907 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K I  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L  M  +  +WNK Y 
Sbjct: 5   SKEILPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +++R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 65  KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH +L D+ K+TV+F  NYDG+ Q P VL  R P++LVNG  GIAVGMATNIP 
Sbjct: 125 VRMAKIAHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+ GC+A+I+NP+ID+D LM+ I GPDFPT A+I GR GI +AY TGRG I +R 
Sbjct: 185 HNLTEVITGCLALIENPEIDVDGLMQYITGPDFPTAALINGRDGIVDAYRTGRGRIQMRA 244

Query: 253 VSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             H E      +E I+ TEIPYQVNKA ++EKIAELV++K+I  I +LRDESD+ G R+V
Sbjct: 245 RHHFEMDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +EL+RG   +V+LN L+  T LQ++F +N VAL   +P+   L  +L+AFV  R EVV R
Sbjct: 305 VELRRGEVPEVVLNNLFAQTQLQTVFGINTVALVDGQPKILNLKDMLEAFVRHRREVVTR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KAR+R H+L GLA+A+AN+D V+  I+ SP    A+ +L+  +W   D+ +++
Sbjct: 365 RTIYDLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEML 424

Query: 432 DLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
           +     +             DG  YLS  Q +AIL++RL +LTGL  D + +E      E
Sbjct: 425 ERAGPDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDE 484

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I++EL S+KDE    R T IVE    +  ED I  EDMVVT+S
Sbjct: 485 IAEYLQILASHERLMEVIREELESIKDEYGDGRLTEIVETRRHLTMEDLIAEEDMVVTLS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  P++ Y+AQRRGG+G+S   ++DEDF+  L + +TH ++L FS+ G VY  KV
Sbjct: 545 HGGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVYWLKV 604

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P+ S Q+RG+ ++N+L L Q E ITTI+P  E        Y+  AT  G V++  L+
Sbjct: 605 YDIPVASRQSRGRPIVNLLPLEQDEWITTILPVREYT---EGHYIFMATSKGTVKKTDLT 661

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +   SG IA++L+  D ++  E      D+LL + +G+ VRF  S +R   GR + G
Sbjct: 662 AFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAM-GRTARG 720

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI +    +V+S+ I                                           
Sbjct: 721 VRGIKMQDDQKVVSLMI------------------------------------------- 737

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +   +LT SE G+GKRT   +F    R  +G+     +  N  G LV 
Sbjct: 738 ----------PKEGATVLTASEHGYGKRTDVDEFPTKGRGTQGVIGMVTNDRN--GKLVG 785

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V D ++I+L++++GTL+R  V+E+    R T+GV +    + ER+V +  I + +  
Sbjct: 786 AVQVFDGNEIMLITNQGTLVRTRVSEVSTLGRNTQGVTLIRVQEGERLVGIAPIMDEDED 845

Query: 904 DEAESTE 910
            ++   E
Sbjct: 846 MDSVVNE 852



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 87/236 (36%), Gaps = 15/236 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+  L+ +   R  G     +   D     ++     +  VL  S +G 
Sbjct: 645 YIFMATSKGTVKKTDLTAFSRPRSSGLIALELEEGDTLMGAEI--TDGNQDVLLMSDVGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      ARG   I +    +                     V+ A++HG  
Sbjct: 703 AVRFAESNVRAMGRTARGVRGIKMQDDQK---------VVSLMIPKEGATVLTASEHGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + +F    R  +  + + + D   +++        N+I+L T  G  VR  +S + 
Sbjct: 754 KRTDVDEFPTKGRGTQGVIGMVTNDRNGKLVGAVQVFDGNEIMLITNQGTLVRTRVSEVS 813

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
              GRN+ GV  I + +G++++ +A ++  D D D  +      +      +   E
Sbjct: 814 TL-GRNTQGVTLIRVQEGERLVGIAPIMDEDEDMDSVVNEQTLPAEDDSEEASGEE 868


>gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815]
 gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815]
          Length = 859

 Score =  910 bits (2351), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/903 (42%), Positives = 557/903 (61%), Gaps = 76/903 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF+PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL E+VD C  
Sbjct: 121 DIDKETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLKNPEASIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +VI
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVI 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSHFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  A++ELM RSW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMDRSWDSSIVREMLQRAETDNATSGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + +Y + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL ++K E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITSIIFDELTTIKSEFGDERRSKIEMNATELNTEDLITPQDMVVTMSHSG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVYWLKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+IT ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKITVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++       E+D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLKKGIIAVGLDDGDYLIGAAITDGEHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQSVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  +++I E+E   + 
Sbjct: 783 VDPEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQIAEAEADVDG 842

Query: 907 EST 909
           ++ 
Sbjct: 843 DAD 845


>gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18]
 gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18]
          Length = 837

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/893 (45%), Positives = 559/893 (62%), Gaps = 84/893 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            SV+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR LF M  M  +WNK Y K AR
Sbjct: 8   VSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R++
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRME 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL DL K+TV + PNYD S +EP+VL +++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHNLS 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG VA+I+NP +  + L+E+I GPDFPTG  I GR GI  AY+TGRG I +R    I
Sbjct: 188 EVIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIYGREGIMKAYSTGRGIIQMRAKVQI 247

Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ IVVTEIPYQVNKA ++EKIAELV+EK+I  I+DLRDESDR+G RVVIELK
Sbjct: 248 ETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R+E+V RRT +
Sbjct: 308 KDENPTILLNHLYKQTQMQSSFGIIMLAIVHNRPRVLTLRETIDFFIEHRKEIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM+R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMER--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL RLTGL RD I  EL  +   I    +IL+S +
Sbjct: 413 -----------FGLSDLQAQAILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEA 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL+ +KD+    RR+ IV    D+  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILKIIVGELIELKDKFGDKRRSEIVMQTADISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI ST   ++FF+  G VY  KV+ +P     ARG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L   E+IT I+P  E     ++ +++ AT++G V++  + ++      G IA
Sbjct: 582 KAIVNLLNLAANEKITAILPVKEFV---DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D+++SV     + D+LL T  G+ +RF    +R   GR S GVRG++L + D V
Sbjct: 639 VNLDEGDKLISVALTDGKQDVLLATANGKAIRFKEDDVRTV-GRVSRGVRGMAL-EDDVV 696

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I MAI+     D                                                
Sbjct: 697 IGMAILNEHFTDS----------------------------------------------- 709

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  VND++ ++L
Sbjct: 710 ---TIFTVTENGYGKRTEISEYRTQSRGGKGVITIKTTERN--GQVVDIKQVNDDNDLML 764

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++D+G ++RV V+   I  R T+GV +    ++ERVV+V R+ E E  DE E 
Sbjct: 765 ITDQGKILRVQVSGFSIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENED 817



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 93/241 (38%), Gaps = 13/241 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  ++  +  G VK+  +  Y   R GG     +   + D +  + +      VL  ++
Sbjct: 607 DDKFIMMATRNGVVKKTNMMEYSHPRVGGIIAVNLD--EGDKLISVALTDGKQDVLLATA 664

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   + K   +      +RG                 ++        + +  +   T++
Sbjct: 665 NGKAIRFKEDDVRTVGRVSRGVRG-------MALEDDVVIGMAILNEHFTDSTIFTVTEN 717

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R ++S++   +R GK  + +       +++ ++    +ND++L T  G+ +R  +S
Sbjct: 718 GYGKRTEISEYRTQSRGGKGVITIKTTERNGQVVDIKQVNDDNDLMLITDQGKILRVQVS 777

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                 GRN+ GVR +   + ++V+++A +   +   +           +     GD  E
Sbjct: 778 GF-SIIGRNTQGVRLMVKEENERVVAVARLAEKEEQDENEDGSEIDEIVELEADGGDEGE 836

Query: 772 I 772
            
Sbjct: 837 E 837


>gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
 gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088]
          Length = 858

 Score =  909 bits (2350), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 563/910 (61%), Gaps = 69/910 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEIFPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH +L DL K+TVDF  NYDG+ + P VL  R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMRKIAHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EVV  C+A+++NP+I +D LME I GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNMTEVVSACMALLNNPEITIDELMEHIPGPDFPTGAIISGRAGILQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I   + +R+ I++ EIPYQ+NKA ++E+IAELV+EK+I  I++LRDESD+ G R
Sbjct: 243 RAKAEVITDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKRG   DV+LN LY  T LQS+F +NMVAL   +P+   L  I+ AF+  R EVV
Sbjct: 303 VVIELKRGEMGDVVLNNLYAQTQLQSVFGINMVALENGQPKVMNLKEIIDAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT YLL KAR+R H+L GLAIA+AN+D ++ +I+ SP+P  AR  L+ + W+  D+  
Sbjct: 363 TRRTIYLLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             DG   LS  Q +AILELRL RLTGL  + + NE     
Sbjct: 423 MLEQAGEDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI + L IL    RL  +I++EL  V +E    R T IV+   D+  ED I  ED VVT
Sbjct: 483 KEIADYLHILGDSDRLKQVIREELEEVVEEFGDERLTEIVDSQHDLSVEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PLS Y+AQRRGG G+S   ++DEDFV  L + STH+++L F++LG VY  
Sbjct: 543 ISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+   Q+RG+ ++N+L L+ GER+T+I+P  E      + Y+  AT  G V++  
Sbjct: 603 KVYQIPVAGRQSRGRPMVNLLPLDPGERVTSILPVAEYT---EDHYIFMATAKGIVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+DF +    G  A++L   D ++       E+D++L +  G+ VRF    +R   GR +
Sbjct: 660 LTDFSRPRSVGLRALELAEDDVLVGTAITHGESDVMLMSSAGKAVRFAEQDVRPM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI +   D++I++ I                                         
Sbjct: 719 RGVRGIRMGDEDEMIALII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +  ++LT S  G+GK+T + +F    R  KG+ A   +  N  G L
Sbjct: 738 ------------PQEGSYVLTASANGYGKKTMASEFPRKGRGTKGVIAMVTNDRN--GPL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V + D+++L+S++GT++R  V+EI    R T+GV +    + E +V + +I ES+
Sbjct: 784 VGAVQVGEADELMLISNQGTMVRTRVSEISTLGRNTQGVRVIRLKEGEELVRITQIEESD 843

Query: 902 I-VDEAESTE 910
               EAE+ E
Sbjct: 844 ELPSEAEAAE 853


>gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 933

 Score =  909 bits (2349), Expect = 0.0,   Method: Composition-based stats.
 Identities = 464/918 (50%), Positives = 634/918 (69%), Gaps = 12/918 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I  D      +  V+I +EM++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTE--IPDDPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR  G+VMGKYHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSV
Sbjct: 59  RESGFTHDKPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL KAA FLLDD+ +DTVDF+PNYD S QEP +L A +PN+LVNG  
Sbjct: 119 DGDSPAAMRYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN GE++D  +A+I+ PD+ LD L++ + GPDFPTG  ILGR GI++A
Sbjct: 179 GIAVGMATNIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTILGRAGIRSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS++IR  + IE+   DR  I+VTEIPYQVNKA + E+IA+LVR K++  I+D+R
Sbjct: 239 FETGRGSVIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE+KR A+ +V+LNQLYR+T LQ+ F VNM+AL+G +P    L  +L+A
Sbjct: 299 DESDRSGMRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQPRLMGLKDVLEA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+V++RR ++ LNKARDRAH+LVGL IAVAN+D V+ +IR +P+   AR  LM R
Sbjct: 359 FIRFREDVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMAR 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W+A+D+  L++LI D    I  DG ++L+E Q R ILELRL RLTGL RD I+ EL+ +
Sbjct: 419 GWDAADVAPLLELIHDEGNVI-VDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEV 477

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            + I + L+I++SR R + +++ EL+S++ EL TPR T I +   D  DE  I    MVV
Sbjct: 478 AVRINDLLEIIASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQTDESLIEPGQMVV 537

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  G++KR PL V+RAQ RGG+GR+    R +D +   F   TH  VLFFSS G  Y+
Sbjct: 538 TITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSGGKAYR 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKVWRLP  SP A+G+AL+N+L     + IT ++P P+DE  W NL++VFAT  G+VRRN
Sbjct: 598 EKVWRLPEASPTAKGRALVNLLPDLGSDTITAVLPLPQDEDLWENLHLVFATASGSVRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
           +LSDF  I  SG IAMKL+  D ++ V TC +  D+ L T+  +C+RF I+   +RVFAG
Sbjct: 658 RLSDFRNIRASGLIAMKLEGDDRLIGVATCREGQDVFLGTRNARCIRFQITDDTLRVFAG 717

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT----- 773
           R S GVRGI LA+GD V S+ ++ H DA  +ER  Y++  +A+RR  +   +E T     
Sbjct: 718 RGSSGVRGIRLAEGDSVNSLCVLNHVDATVEERAAYLRMANARRRAEAAQEDEETDEITA 777

Query: 774 -SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                  + +  ++ ER  EL+  E+ +L VS  GFG+R+S+YD+R+S R G+GI     
Sbjct: 778 GDDAEIPADDLPLTPERFAELEAAEEVLLIVSNAGFGRRSSAYDYRVSGRGGQGINNMTF 837

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S      A+VA  PV +   ++LV+D G LIR+P+ ++RI SR   GV +F     E V 
Sbjct: 838 SANKRGNAVVATLPVLEGTDVMLVTDAGRLIRLPIGQVRIMSRQASGVTLFRLNDTEEVT 897

Query: 893 SVERIRESEIVDEAESTE 910
           SV  + + +  D  E ++
Sbjct: 898 SVFPVMD-DGEDGGEDSD 914


>gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 881

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/914 (45%), Positives = 582/914 (63%), Gaps = 43/914 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I          IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSI-------HSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+   KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E T   +EQI+VTE+PYQVNKA ++EKIAEL+++K+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV+RR+ + L KAR+R H+L GLA+A +N+DEV+ IIR S   + A  +L+ R
Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISR 413

Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            W   ++I  L+D     +      G      YLS  Q  AILELRL RLTGL  +++ N
Sbjct: 414 PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVIN 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I E L I++S  RL+ +I++EL  V+ +    RRT I     D++ ED I +
Sbjct: 474 EYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +V+ AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYE---EDKFVIMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R 
Sbjct: 651 IVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + EE++  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDIADDESAVEIEEVSDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             + +++ NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLE 862

Query: 896 RIRESEIVDEAEST 909
           R+ + +  DE    
Sbjct: 863 RVCDVDDEDEGSED 876


>gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ]
 gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ]
          Length = 906

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 454/901 (50%), Positives = 635/901 (70%), Gaps = 8/901 (0%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
             G+  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G + +K Y 
Sbjct: 2   SDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMG+YHPH + AIYDAL RMAQD+SL + LI+ QGNFGSVDGDPPA+ RYTE
Sbjct: 62  KAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL +AAHFLL+D+ +DTVDFRPNYD + QEPVVL A +PNVLVNG GG+AVGM+TNIP+
Sbjct: 122 ARLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  V  IDNP++ L+ LM +I GPDFPTG VI+G  GIK+A+ATGRG+I+I+G
Sbjct: 182 HNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIMGDAGIKSAFATGRGTIIIQG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE+    R+ I++ EIPYQ NKA ++E+I ELV+EK+I  ++DLRDES++ G RV I
Sbjct: 242 KTHIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRVAI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+  ++ V+LNQL   T L++ FS+N + L+  +P   +LI I++ FVAFR+EV+VRR
Sbjct: 302 ELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSRPRVMSLIEIIETFVAFRKEVLVRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-NASDIKDLI 431
           T+Y L K R+RAH+ +G+ IAV N+DE+V IIR S +   A   L +R+W  + +++ +I
Sbjct: 362 TRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVRGMI 421

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +L+ D S  +   G   L+  Q +AILE+RL RLTGL +  +  EL S+   I E   IL
Sbjct: 422 ELVSD-STGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTKIL 480

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+ S L+ ++++ LL VK  + TPRRT I E   D++ E  I RE+MVVTV+  G+VKRV
Sbjct: 481 STDSLLMCMVREGLLDVKRRVATPRRTTIEESKGDIDAESLIPREEMVVTVTMNGFVKRV 540

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS YRAQ+RGGKGR    +++ED  T LF+V THTSVLFFS++G VYK KV++LP+G P
Sbjct: 541 KLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVYKLKVYKLPLGEP 600

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESS--WNNLYVVFATKHGNVRRNKLSDFIQIN 669
            +RG++L+NI  L +GE IT++MP P+        ++ VVFAT  GN+RRN L+DF  + 
Sbjct: 601 ASRGRSLVNIFPLAEGETITSVMPLPDVGVDGGVESMDVVFATSSGNIRRNALADFQYVP 660

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GKIAM L   D+++S   C   + +LL++++G+ +RF +  +R F GR S GVR I L
Sbjct: 661 SNGKIAMVLTPGDQLISANVCVSTDHVLLSSRMGKSIRFSVGNVRQFKGRMSDGVRAIKL 720

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG-NISEE 788
           A+GDQVISM+++  ++A  + R  Y+K     R   +    E    +    +EG  +SEE
Sbjct: 721 AEGDQVISMSVLHGSEASSEVREAYLKIPVDSRIKAAESDGESIGKRVSGMLEGLQLSEE 780

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              ++  KEQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA F V 
Sbjct: 781 TFVDMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARN--GKVVASFSVA 838

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEAE 907
             DQ++L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV  + +S +  D+ E
Sbjct: 839 HTDQVMLITDKGKLIRISVSDIRIIGRSTQGVTLFKTEKGEKVVSVALVIDSGDNCDDDE 898

Query: 908 S 908
            
Sbjct: 899 G 899



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDI 696
           +      +++  T++G  +R    ++    R G   + +       ++++  +    + +
Sbjct: 784 DMVKKEQFILTVTENGFGKRTSAYEYRTTARGGVGVLNILTTARNGKVVASFSVAHTDQV 843

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L T  G+ +R  +S IR+  GR++ GV      KG++V+S+A+V+ +  + D+      
Sbjct: 844 MLITDKGKLIRISVSDIRII-GRSTQGVTLFKTEKGEKVVSVALVIDSGDNCDDDEGIGG 902

Query: 757 HMSA 760
            +SA
Sbjct: 903 EVSA 906


>gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN]
 gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN]
          Length = 878

 Score =  909 bits (2348), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/906 (42%), Positives = 556/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLKNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R ++H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRALTHFEEIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + S+ + SDG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLSRAETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II  EL S+K E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ++MVVT+SH GYVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +INI  L +GE+IT ++P  E      + +V   
Sbjct: 602 FSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFS---ADKFVFMG 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G  VI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQNVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++A         +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITAIIVDELTSIKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   ++ ++T+S  G+ K     ++    R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDT 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G  I +     + E++  V  +
Sbjct: 590 L---FIANTHDHILCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648


>gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           parainfluenzae T3T1]
          Length = 881

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/915 (45%), Positives = 585/915 (63%), Gaps = 45/915 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I          IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSI-------HSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q G+   KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DQSGITAGKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E T   +EQI+VTE+PYQVNKA ++EKIAEL+++K+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNII 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYALTQMQVTFGINMVALDHGQPRLFNLKQIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV+RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S   + A  +L+ R
Sbjct: 354 FVMHRREVVIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISR 413

Query: 421 SWNAS-DIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            W  + +I  L+D     +      G      YLS  Q  AILELRL RLTGL  +++ N
Sbjct: 414 PWKLNNEILGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVIN 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I E L I++S  RL+ +I++EL  V+ +    RRT I     D++ ED I +
Sbjct: 474 EYKELLVKIAELLHIINSPERLMEVIREELEQVRAQFADERRTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +V+ AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYE---EDKFVIMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   SG IA+ L   DE++ V+     N+I+L +  G+ VRF  SA+R 
Sbjct: 651 IVKKIALTEFSRPRSSGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAESAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + EE++  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDIADDESAVEIEEVSDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             + +++ NI +     +   +  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEETLDLNIDKVVSLVVPKNDGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA+DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTAEDEHVVSLE 862

Query: 896 RIRESEIVDEAESTE 910
           R+   ++ DE E TE
Sbjct: 863 RVC--DVDDEDEGTE 875


>gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
 gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721]
          Length = 839

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815


>gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101]
 gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101]
          Length = 839

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815


>gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4]
 gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4]
          Length = 832

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/905 (44%), Positives = 553/905 (61%), Gaps = 93/905 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+ M  MG ++NK Y K AR
Sbjct: 8   VAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKSAR 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD L RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE R+ 
Sbjct: 68  VVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIRMY 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + AH LL DL K+TV+  PNYD S QEP+VL A++PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 128 QLAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNIPPHNLS 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DG +AVI NP +  + L+E+I GPDFPT   I GR GI +AY TGRG I +R  + I
Sbjct: 188 EVIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIYGREGIVSAYGTGRGIIQMRARAMI 247

Query: 257 EKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           E     +R+ IVVTEIPYQVNKA ++EKIAELVREK+I  I+DLRDESDR+G R+VIELK
Sbjct: 248 ETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGMRIVIELK 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +  ++LN LY+ T +QS F + M+A+   +P   TL   +  F+  R E+V RRT +
Sbjct: 308 KDENPQILLNHLYKQTQMQSSFGIIMLAIVNNRPRVLTLRETINYFIDHRREIVTRRTIF 367

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA  RAH+L GL IA+ NLDEV+ +I+ S +P  A+  LM R               
Sbjct: 368 DLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSR--------------- 412

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q +AIL++RL RLTGL RD I  E   +   I    +IL+S +
Sbjct: 413 -----------FGLSEIQAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASET 461

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +L II  EL  +KD+    RRT IV    ++  ED IV EDMVVT+SH GY+KR  +++
Sbjct: 462 EILNIIVGELRELKDKFGDKRRTEIVSQTAEISLEDTIVEEDMVVTISHTGYIKRNAVTL 521

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YRAQRRGGKG++G+  ++EDFV  LFI S+   ++FF+  G VY  KV+ +P      RG
Sbjct: 522 YRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRG 581

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+L+L+  E+IT I+P  E      + +++ AT++G V++  L ++      G IA
Sbjct: 582 KAIVNLLNLSTNEKITAILPVKEFT---ADKFIMMATRNGVVKKTPLLEYSHPRVGGIIA 638

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  D++++V       D+LL +K G+ +RF  S +R   GR S GVRG++L   D V
Sbjct: 639 VNLDEGDKLITVALTDGRQDVLLASKNGKSIRFKESDVRTV-GRVSRGVRGMTLEDDDVV 697

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I M I+     D                                                
Sbjct: 698 IGMEILNENFTDS----------------------------------------------- 710

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               + TV+E GFGKRT   ++R  +R GKG+     ++ N  G +V +  V D + ++L
Sbjct: 711 ---TLFTVTENGFGKRTELSEYRCQSRGGKGVITIKTTERN--GCVVDIKQVTDENDLML 765

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE----------SEIVDE 905
           ++D+G ++RVPV    I  R T+GV +  T  +ER+V+V R+ E          ++   E
Sbjct: 766 ITDQGKILRVPVAGFSIIGRNTQGVRLMVTEDEERIVAVARLAEKEDEEESEETADNGPE 825

Query: 906 AESTE 910
           AE+ E
Sbjct: 826 AENVE 830


>gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
 gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239]
          Length = 839

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815


>gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
 gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495]
 gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987]
          Length = 839

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKSKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815


>gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
 gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36]
          Length = 960

 Score =  908 bits (2347), Expect = 0.0,   Method: Composition-based stats.
 Identities = 402/916 (43%), Positives = 570/916 (62%), Gaps = 29/916 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GIT ++I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   GITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++ C+A+I NPD+ L+ +ME I GPDFPT  +I G+ GI+ AY TGRG + IR  +
Sbjct: 187 LNEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGIINGKAGIEQAYRTGRGKVHIRARA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +IE     RE IVV E+PYQVNKA ++E+IAE V++K+I  I+ LRDESD+ G R+V+E+
Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T +Q +F +NMVAL   +P+ FTL  +L AF+  R EVV RRT 
Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVALIDKQPKIFTLKEMLDAFLRHRREVVTRRTV 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR+RAH+L  LAIA+AN+DE++ +I+ S     A++ L+ R W   D+  +++  
Sbjct: 367 FELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLERA 426

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +             +G+ +L+E+Q +AIL+LRL +LTGL  + I +E   L   I E
Sbjct: 427 GDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL++ SRLL +I +EL + KD     RRT I     D+  ED I RED+VVT+SH G
Sbjct: 487 LLYILNTPSRLLEVITEELQASKDAFGDERRTEISASSADINLEDLIEREDVVVTLSHEG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  P++ Y AQRRGGKG+S   M++EDF+  L + +TH  +L FSS G +Y  KV++L
Sbjct: 547 YVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGRLYWMKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S QARGK ++N+L L  GERIT I+P  + E   ++ +V  AT +G V++  LS + 
Sbjct: 607 PLASRQARGKPIVNLLPLQDGERITAILPVAQFE---DDKFVFMATANGTVKKTALSAYS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-- 724
           +    G IA+ L+  DE++ V+     NDI+L +  G+ VRF           +   V  
Sbjct: 664 KPRAGGIIAVNLNDEDELIGVDITDGTNDIMLFSDEGKVVRFCEFEEIPVLDEDGNPVLE 723

Query: 725 --RGISLAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             + +   +G+ V+      ++  A    DE    +     +  L     +         
Sbjct: 724 EAKPVLDEEGNPVLDEEGNPVLEEAKPVLDEEGNPVLDEDGKPVLEEAKPKIKFKGVRPM 783

Query: 780 SVEGNISEERCQELKLK---------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                       E   K         +  ILT +E GFGKRT+  ++   +R  KG+ + 
Sbjct: 784 GRTATGVRGIKLEEGQKVVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSI 843

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            VS+ N  G +V    V D D+++L+++ GTL+R   +E+ +  R T+GV +  T +DE 
Sbjct: 844 KVSERN--GKVVGATQVLDGDELMLITNGGTLVRTRASEVSMVGRNTQGVRLIRTGEDEL 901

Query: 891 VVSVERIRESEIVDEA 906
           VV ++RI E E  + A
Sbjct: 902 VVGLQRIDEVEEDENA 917



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 63/160 (39%), Gaps = 4/160 (2%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692
                   N+  ++ AT++G  +R  L ++   +R  K  + +       +++       
Sbjct: 801 VVSLIVPKNDGAILTATENGFGKRTALEEYPAKSRGTKGVVSIKVSERNGKVVGATQVLD 860

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++++L T  G  VR   S +    GRN+ GVR I   + + V+ +  +   + D +  +
Sbjct: 861 GDELMLITNGGTLVRTRASEV-SMVGRNTQGVRLIRTGEDELVVGLQRIDEVEEDENAVV 919

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
              ++  A     +  T+   + +     +   S E   E
Sbjct: 920 VDAENAEAATEAPATPTDATDATEATDVTDATDSAEEATE 959


>gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
 gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400]
          Length = 882

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/906 (42%), Positives = 558/906 (61%), Gaps = 76/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K    +S+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   DQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K  H LL D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMAKIGHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C  ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACQHLLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDRE-QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R ++H E+    +   I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G 
Sbjct: 242 MRALTHFEEIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV
Sbjct: 302 RVVIELKRGEVPEVVLNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KAR+R HVL GLA+A+AN+DE + II+ +P P  A++ELM R+W++S ++
Sbjct: 362 LTRRTVYELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARAWDSSLVR 421

Query: 429 DLIDLID-----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +++   +                 + S+ + SDG   LS+ Q + IL++RL RLTGL +D
Sbjct: 422 EMLSRAETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   +  +I + LDIL+   R+  II +EL S+K E    RR++I     ++  ED
Sbjct: 482 KIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ++MVVT+SH GYVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L 
Sbjct: 542 LITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G VY  KV+ +P GS  +RG+ +INI  L +GE+IT ++P  E      + +V   
Sbjct: 602 FSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFS---ADKFVFMG 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L  F ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  +
Sbjct: 659 TALGTVKKTPLEAFGRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDEN 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRG+ L  G  VI++ +                               
Sbjct: 719 DVRPM-GREARGVRGMQLEDGQNVIALLV------------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++Q +LT +E GFGKRT   ++    R  KG+ A  
Sbjct: 747 ---------------------AGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQ 785

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G +VA   V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++
Sbjct: 786 TSERN--GKVVAATLVDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKL 843

Query: 892 VSVERI 897
             ++++
Sbjct: 844 SGLQQV 849



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++A         +        S 
Sbjct: 470 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSK 529

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   ++ ++T+S  G+ K     ++    R G+G +AT + + + I  
Sbjct: 530 IELNATELNTEDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDT 589

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G  I +     + E++  V  +
Sbjct: 590 L---FIANTHDHILCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPV 646

Query: 898 RE 899
           +E
Sbjct: 647 KE 648



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 14/245 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PL  +   R   KG   V + D D++    I      V+ F
Sbjct: 649 FSADKFVFMGTALGTVKKTPLEAF--GRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLF 706

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   +  + L  G+ +  ++   +         V+ AT
Sbjct: 707 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 758

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++     QE  I+L T  G  +R  
Sbjct: 759 ENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTR 818

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  ISL +G ++  +  V  A+A+ D                +G  
Sbjct: 819 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEAEGDAESDAEGPAEGNNAGDNGGE 877

Query: 770 EEITS 774
           E   +
Sbjct: 878 EGGAA 882


>gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A
 gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 876

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/904 (43%), Positives = 571/904 (63%), Gaps = 67/904 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++G +A +++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + I   +
Sbjct: 187 LTEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYICARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A   V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
              L KARDRA +L  L+IA+AN+D ++ +IR +P P  A+  L+ RSW+  ++  +++ 
Sbjct: 367 ILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAMLEA 426

Query: 434 IDDSSYTI-------GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            DD++            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 427 GDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I    +D+  ED I +ED+VVT+SH G
Sbjct: 487 LLHILGSADRLMEVIREELELVREQFGDARRTDITANSVDINIEDLITQEDVVVTLSHEG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  P++ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+++
Sbjct: 547 YVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQV 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG+ ++N+L L   ER T I+P  E E   N   V  AT  G V++    +F 
Sbjct: 607 PEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVN---VFMATASGTVKKTPADEFS 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L+  DE++ V+  + +++++L +  G+ VRF    +R   GR + GVRG
Sbjct: 664 RPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAM-GRTATGVRG 722

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA  D+V+S+ +                                              
Sbjct: 723 IKLAGEDKVVSLIV---------------------------------------------- 736

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  ILT +E G+ KRT+  ++   +R+ +G+ +  V++ N  G++V    
Sbjct: 737 -------PRGEGRILTATENGYRKRTAVAEYPTKSRATQGVISIKVTERN--GSVVGAVQ 787

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI++++D GTL+R+ V+E+ I  R T+GV++  TA+DE VV+++R+ E    +E 
Sbjct: 788 VDDCDQIMMITDAGTLVRIRVSEVSIVGRNTQGVILIRTAEDENVVALQRVAEPVDDEEL 847

Query: 907 ESTE 910
           ++ +
Sbjct: 848 DAID 851



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 91/245 (37%), Gaps = 15/245 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+ P   +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 644 NVFMATASGTVKKTPADEFSRPRSAGIIAVNLNEGDELIGVDL--TSGQDEVMLFSAAGK 701

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++ AT++G  
Sbjct: 702 VVRFKEDDVRAMGRTATG---VRGIKLAGEDKVVSLI------VPRGEGRILTATENGYR 752

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ +  + +        ++        + I++ T  G  VR  +S + 
Sbjct: 753 KRTAVAEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRIRVSEV- 811

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+++  V     D +              +      +   
Sbjct: 812 SIVGRNTQGVILIRTAEDENVVALQRVAEPVDDEELDAIDGSAAEGDEDIAPEADTDDDI 871

Query: 775 LKNDS 779
            +++ 
Sbjct: 872 AEDEE 876


>gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124]
 gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
 gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124]
 gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969]
          Length = 839

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/898 (42%), Positives = 559/898 (62%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+D+V+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEMT 815


>gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake]
 gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake]
          Length = 898

 Score =  907 bits (2344), Expect = 0.0,   Method: Composition-based stats.
 Identities = 438/897 (48%), Positives = 635/897 (70%), Gaps = 5/897 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + SVSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G ++ K Y K
Sbjct: 5   NNVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYD +  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+A IDNP+I  D L+ I+RGPDFPTG  ILG  GI++A+ TG+G+I+++G 
Sbjct: 185 NLGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I ELV+EK+I  I DLRDES++ G RV IE
Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  V+LNQ+   T L++ FS+N + L   KP+  +L+ I+  FV +R EV+ RRT
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTTFSINTLVLENNKPKVMSLLDIISTFVEYRREVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + ++++I+
Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ D + ++  D    L+ VQ ++ILE++L RLT L ++ +  +L S+   I++  ++L 
Sbjct: 425 LVAD-TKSLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELLK 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL +IK  L+ VK +L  PRRT I     + + ED I +EDMVVTV+  GY+KR  
Sbjct: 484 NKEALLKLIKDGLIDVKTKLAVPRRTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRAK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGR G  +++ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGEPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++M  P++     +L +VFAT  GN+RRN L+DF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENESITSVMSLPDNVEDAESLNIVFATASGNLRRNALADFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAM LD  D ++SV+ C +E+ +LL+T+LG+ +RF +S +R F GR S GVR I L+  
Sbjct: 664 KIAMVLDEGDTLISVKVCKEEDHVLLSTRLGKSIRFSVSNVRQFKGRMSDGVRAIKLSSQ 723

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VISM+I+L  D   +++  Y+K    +R  +  +    T +      +  + ++    
Sbjct: 724 DNVISMSILLAMDIGSEKKDLYLKVPLDKRIAVKEEGFIGTGIVK-ILADLGLDQDTFMT 782

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQFILTV+E GFGKRTS+Y++R + R G G+     +  N  G +VA FPV  ND 
Sbjct: 783 MVQNEQFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTTRN--GNVVASFPVESNDH 840

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           I+L++DKG LIR+ V++IRI  R+T+GV +F T K E+VVSV +I +++   E +  
Sbjct: 841 IMLITDKGKLIRIAVSDIRIIGRSTQGVTLFKTEKHEKVVSVAKIIDAKDDSEIDDD 897


>gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
 gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626]
          Length = 829

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/895 (42%), Positives = 557/895 (62%), Gaps = 86/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +++L++++G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E 
Sbjct: 758 ELMLINNQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEED 812


>gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
 gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1]
          Length = 824

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/902 (42%), Positives = 558/902 (61%), Gaps = 86/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  E  I  V++T EM+ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DTPESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGDP AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+DF+ NYDGS +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIVGRSGIRRAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+VTE+PYQVNKA ++E+IAELV EKRI  I DLRDESDR G R
Sbjct: 243 LRARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY++T++Q+ F +N++AL   +P+   L   LK ++  +EEV+
Sbjct: 303 MVIEVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQPKVLNLKQALKFYLDHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ ++D ++++IR S   + AR  LM++         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYRGLIQLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II++ELL +K+  +  RRT I+   +  +EDED I +E + +T++H GY+
Sbjct: 457 VLADEEKVLEIIREELLEIKERFNDERRTEIIAASVDQIEDEDLIPQESIAITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VYK+K + +P 
Sbjct: 517 KRLPISTYRSQKRGGRGVQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKVYKKKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L +++ E I T++   +      + ++ F TK G  +R  +++F  I
Sbjct: 577 YGRTAKGIPIVNLLEIDKDEWINTMIRVEDFV---EDWFLFFTTKKGISKRTPVTEFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+      DI++ TK G  +RFP + +R   GR++ GV+GI+
Sbjct: 634 RTNGLIAIHLKEEDELISVKLTDGHKDIIIGTKNGMLIRFPETDVRSM-GRSATGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D+V+ M I+   D                                           
Sbjct: 693 LSGDDEVVGMEILEENDD------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L V++ G+GKRT   ++RI +R GKG++  +++  N  G LVAV  V 
Sbjct: 711 -----------VLIVTKNGYGKRTKGSEYRIQSRGGKGLKTCNITSKN--GPLVAVKTVT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             + I+L++  G LIR+ V +I +  R T GV +     +E V +V ++ + E  +  + 
Sbjct: 758 GEEDIMLITAGGVLIRMAVGDISVLGRNTMGVKLIRLGDEEYVATVAKVEKDEEENHVDP 817

Query: 909 TE 910
            E
Sbjct: 818 VE 819


>gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
 gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden]
          Length = 898

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/897 (49%), Positives = 645/897 (71%), Gaps = 6/897 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K
Sbjct: 5   NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+A IDNPDI  D L++I+ GPDFPTG  ILG  GI++A+ TG+G+I+++G 
Sbjct: 185 NLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I ELV+EKRI  I DLRDES++ G RV IE
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  V+LNQ+   T L++ FS+N + L+  KP+  +L+ I+  F+ +R+EV+ RRT
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +K++I+
Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ DS   + +D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L 
Sbjct: 425 LVADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL ++K  L  +K +L  PR+T I     + + ED I +EDMVVTV+  GY+KRV 
Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGR G  +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++MP PE++     L ++FAT  GN+RRN LSDF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-K 731
           KIAM LD  D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L+ +
Sbjct: 664 KIAMVLDEGDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSE 723

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVISM++++  + D + +  Y+K +  ++RL+  +   I     +  V+  +S++   
Sbjct: 724 EDQVISMSVLIAMEVDSETKDLYLK-VPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFM 782

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +   E+FILTV+E GFGKRTS+Y++R + R G G+     ++ N  G +++ F V  ND
Sbjct: 783 SMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESND 840

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            I+L+++KG LIR+ VN+IRI  R+T+GV +F T K E+VVSV ++ + +   + + 
Sbjct: 841 HIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDIDD 897


>gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
 gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M]
          Length = 868

 Score =  907 bits (2343), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/895 (42%), Positives = 550/895 (61%), Gaps = 76/895 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+    + 
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLSRAEQENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II  EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVDELTSIKSEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKFVFMATALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G  VI++ +                                              
Sbjct: 717 MQLDEGQNVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V+   QI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++ E+E
Sbjct: 783 VDQEAQIMLITTTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQVAEAE 837


>gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786]
          Length = 850

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/891 (42%), Positives = 550/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+D+ + II+ +P P  A++ELM +SW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDDFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAETENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELNAVKVEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E      + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVREFS---ADKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G QVI+M +                                              
Sbjct: 717 MQLDEGQQVIAMLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQSVLTATENGFGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELNAVKVEFGDARRSK 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 630

Query: 898 RE 899
           RE
Sbjct: 631 RE 632


>gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
 gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17]
          Length = 895

 Score =  906 bits (2341), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/911 (43%), Positives = 566/911 (62%), Gaps = 70/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGS+DGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH LL DL K+TVDF PNYDG+ Q PVV+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMKKIAHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV GC+A+ID+PD+ +D LME I GPDFPT  +I GR GI  AY TGRG + I
Sbjct: 183 PPHNLTEVVKGCLALIDDPDLSIDQLMEFIPGPDFPTEGIINGRAGIVEAYRTGRGRVYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    +E      R+ +++TE+PYQ+NK+ ++EKIAELV+EKR+  I +LRDES+++G R
Sbjct: 243 RARHEVEHDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+RG + DVI+N L++ T L+++F +NMVAL   +P    L  +L AF+  R EVV
Sbjct: 303 VVIELRRGENPDVIINNLFKQTQLETVFGINMVALIDGEPRILNLKEMLDAFIRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+A+AN+DE++ +I+ SP+   A+ +L+ + W + D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   + +             +G  +LS  Q +AIL+LRL RLTGL  + ++NE   + 
Sbjct: 423 MLERAGEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREIL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I + LDIL +  RL+ +I+ EL ++ +E    RRT I     D+   D I  E++VVT
Sbjct: 483 ERIADLLDILGNPERLMQVIRDELQAIVEEFGDERRTEITSSRRDLTVADLIDEEELVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K   +  Y+AQRRGG+G++   M+DEDFV  L + ++H ++L FS+ G VY  
Sbjct: 543 ISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P  S  +RG+ ++NIL L++GERITT +P  +      + +V+ AT  G V++  
Sbjct: 603 RVFEIPRASRASRGRPMVNILPLDEGERITTFLPVRDYP---EDQFVLMATSAGVVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L +F +   SG IA+ LD  D ++         +I+L +  G+ VRF   A+R  + R +
Sbjct: 660 LPNFSRPRSSGLIALSLDEGDTLIGAAITDGSAEIMLFSTAGKAVRFKEEAVRPMS-RTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI +A+G  V+S+ I                                         
Sbjct: 719 RGVRGIRMAEGHHVVSLII----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          +  +L  SE G+GKRT+  +F    R  +G+ A   S  N  G L
Sbjct: 738 ------------PQDDAVLLMASEHGYGKRTNLNEFPTYGRGSQGVIAMQCSDRN--GNL 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRES 900
           V    + D D+++L+SDKGTL+R   +E+ + SR T+GV +   + +DER+V VERI E+
Sbjct: 784 VTALQLFDGDEMMLISDKGTLVRTRTDEVSVLSRNTQGVRLIKLSQEDERLVGVERIAET 843

Query: 901 EIVD-EAESTE 910
           +  +   E TE
Sbjct: 844 DAEEIIGEDTE 854


>gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6]
 gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6]
          Length = 903

 Score =  906 bits (2340), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/913 (43%), Positives = 563/913 (61%), Gaps = 50/913 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEESERITAILPVTEFS---ADKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  +              
Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPV--------- 713

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                                D +      ++   + +         T+         + 
Sbjct: 714 --------------------LDENGNPALDENGQPEIKFKGVRPMGRTAAGVRGMKLADG 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   +  +LTV+E G+GKRT   ++    R  +G+ +  VS+ N  G++V   
Sbjct: 754 DQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN--GSVVGAV 811

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE------ 899
            V D D+ ++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E      
Sbjct: 812 QVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETEL 871

Query: 900 --SEIVDEAESTE 910
              E  D  E+TE
Sbjct: 872 PEGEEADATEATE 884



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 50/149 (33%), Gaps = 4/149 (2%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692
                   N+  V+  T++G  +R  LS++    R  +  + +        ++       
Sbjct: 756 VVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED 815

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++ ++ T  G  VR  ++ +    GRN+ GV  I  A+ + V+ +  +   +       
Sbjct: 816 GDEFMMITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETELPEG 874

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSV 781
                  A  +       +  +       
Sbjct: 875 EEADATEATEQAPQAQDPQADNDDAADQE 903


>gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
 gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4]
          Length = 855

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/887 (42%), Positives = 557/887 (62%), Gaps = 86/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM++S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  LL D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMSKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPDI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    + +I+V+E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAQTEIEEYK-GKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  + +V+
Sbjct: 302 IVIELRRDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLTLKECLEHYLGHQVQVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM++         
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I NE   L  +I E   
Sbjct: 413 -----------------FSLSYEQAQAILDMRLQRLTGLERDKIENEYKELIAKIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++EL+ VK++ +  RRT I      +EDED I R+++V+T++H GY+K
Sbjct: 456 ILADGEKVLEIIREELIEVKEKFNDERRTVISMNEDHLEDEDLIPRQNVVITLTHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGGKG  G+   D+DF+  LF  ++H ++LFF++ G VY+ K + +P  
Sbjct: 516 RMPISTYRSQRRGGKGIQGMGTNDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L + Q E I+T++P  E +   +N Y+ F TKHG  +R +LS F  I 
Sbjct: 576 GRTAKGIPIINLLQIEQDETISTVIPIEEFD---DNSYLFFLTKHGIAKRTQLSSFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   DE+  V       ++++ TK G  +RF  + +R+  GR + GV+GISL
Sbjct: 633 RGGLFAITLRGDDELHGVRLTDGGQEVIIGTKHGMAIRFHETDVRLM-GRTAGGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +  D V+ M I+                                                
Sbjct: 692 SDDDHVVGMDIL------------------------------------------------ 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +   +L V+E G+GKRT   ++R+ NR GKGI+  ++++ N  G+LV++  V+D
Sbjct: 704 -----EENHQVLIVTENGYGKRTPIEEYRVQNRGGKGIKTCNITEKN--GSLVSLKVVSD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              I++++  G +IR+ V  I    R T+GV +    + E V +V R
Sbjct: 757 EHDIMIITASGIIIRMHVEGISTTGRNTQGVTLIRVNEKEEVATVAR 803


>gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 929

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/921 (40%), Positives = 555/921 (60%), Gaps = 26/921 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDDTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D P+ D+D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTVNACLHLLDAPETDIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE I++ EIPYQVNKA ++EKI +LVR+K +  IAD
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIAD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +S ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARAWRSSLVEDMLGRTDLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL  +K      R++ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDFLDILAKPERITQIIREELEEIKTGFGDGRKSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++ V      +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEDDCLVGVAKTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +      G +            +  +S  +    D +  +          +       
Sbjct: 718 --NEFWEKTGSDDA-----EETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGRGSG 770

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                 L  +  +   I+     E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 771 GLRGMRLPENGRIVSLIT--FAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 828

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V ++D ++L++  G LIR  V++IR   RA  GV + +  + 
Sbjct: 829 AINTGERN--GDLVAATLVGESDDLMLITSGGVLIRTKVDQIRETGRAAAGVKLINLDEG 886

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E++VS+ER+ E      AE  
Sbjct: 887 EQLVSLERVAEEPEDTAAEDE 907



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 101/282 (35%), Gaps = 42/282 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + ++++D +  +        ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEDDCLVGVAKTGGSDDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT-------------------- 632
           S+LG   +   +    GS  A      N +S +  +                        
Sbjct: 709 SNLGKAIRFNEFWEKTGSDDAEETDNENDVSDDLSDSEDEEGGDTAAISGKHGVRPSGRG 768

Query: 633 ----------------IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
                            +     E    +L V+ AT +G  +R  ++D+ + N+ G+  +
Sbjct: 769 SGGLRGMRLPENGRIVSLITFAPECEQGDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 828

Query: 677 KLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+
Sbjct: 829 AINTGERNGDLVAATLVGESDDLMLITSGGVLIRTKVDQIRE-TGRAAAGVKLINLDEGE 887

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           Q++S+  V     D            A          E    
Sbjct: 888 QLVSLERVAEEPEDTAAEDESDADTGALENEAENKGAEEAEE 929


>gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1]
 gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1]
          Length = 881

 Score =  905 bits (2339), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/935 (42%), Positives = 560/935 (59%), Gaps = 94/935 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WNK 
Sbjct: 3   ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H LL DL K+TVDF PNYD S   P VL AR P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMDKISHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GC+A+ID P+I++D LME I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLTEVINGCLALIDRPEIEIDELMEFIPGPDFPTGAFINGRAGIVEAYKTGRGRIYM 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E       + IV TEIPYQ+NKA ++EKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARHHVEDMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG + DV++N ++  T LQS+F +NMVAL   +PE   L  IL+ FV  R EVV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPELLNLKQILECFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+A+AN+D V+ +IR SP+   AR +L+  SW   D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             +G   LS  Q +AIL+LRL RLTGL  + + +E   L 
Sbjct: 423 MLERAGADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L+IL + +RL+ +I +EL +V+D+    R T I+    D+   D I    MVVT
Sbjct: 483 AVIAELLEILGNPTRLMEVICEELEAVRDQFGDERLTEILTSRQDLTIADLIDEAPMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GY K  PL  Y+AQRRGG+G+S   M+DED ++ L + S+H +V+ FS+ G VY  
Sbjct: 543 ISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V+ +P+ S  A+G+ ++N+L L +GE I+ ++P  ++     + Y+  AT +G V++  
Sbjct: 603 RVFEIPVASRTAKGRPIVNLLPLAEGEHISALLPLNDE---MEDSYIFMATANGTVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +  F +   +G IA+ LD  DE++ V   + ENDI+L +  G+ +RF  S +R   GR +
Sbjct: 660 VEYFARPRSTGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESDVRAM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA   +V+S+ +                                         
Sbjct: 719 AGVRGIRLADEYKVVSLIV----------------------------------------- 737

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         +   +L   E GFGKRT + DF +  R G+G+    VS+ N  G +
Sbjct: 738 ------------PQEGCSVLFACENGFGKRTLTEDFPVYGRGGQGVIGIQVSERN--GPV 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI---- 897
           V    V D D+I+L+SD+GTL+R   +E+    R T+GV +     DE +V VER+    
Sbjct: 784 VGATQVEDTDEIMLISDQGTLVRTRASEVSCQGRNTQGVTLIRLMNDEHLVGVERVVDED 843

Query: 898 ----------------------RESEIVDEAESTE 910
                                  E+E  DEA  +E
Sbjct: 844 DDAGEDAESEERGEEQATTPDAPEAEKTDEAPDSE 878



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 85/254 (33%), Gaps = 15/254 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            + +  +   +  G VK+  +  +   R  G     + + + D +  +   S    ++  
Sbjct: 640 EMEDSYIFMATANGTVKKTAVEYFARPRSTG--LIALSLDENDELVGVAQTSGENDIMLV 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G   + K   +      A G   I         R+                 V+FA 
Sbjct: 698 SSSGKTIRFKESDVRAMGRTAAGVRGI---------RLADEYKVVSLIVPQEGCSVLFAC 748

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R    DF    R G+  + +   +     +        ++I+L +  G  VR  
Sbjct: 749 ENGFGKRTLTEDFPVYGRGGQGVIGIQVSERNGPVVGATQVEDTDEIMLISDQGTLVRTR 808

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +    GRN+ GV  I L   + ++ +  V+  D D  E     +    Q        
Sbjct: 809 ASEV-SCQGRNTQGVTLIRLMNDEHLVGVERVVDEDDDAGEDAESEERGEEQATTPDAPE 867

Query: 770 EEITSLKNDSSVEG 783
            E T    DS  E 
Sbjct: 868 AEKTDEAPDSEGEE 881


>gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
 gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e]
          Length = 850

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/891 (42%), Positives = 545/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL  VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTLIGDELTQVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    QVI+M +                                              
Sbjct: 717 MQLDDAQQVIAMLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDPEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTLIGDELTQVKAEFGDARRSK 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 630

Query: 898 RE 899
           +E
Sbjct: 631 KE 632


>gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047]
 gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3047]
          Length = 880

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/913 (45%), Positives = 582/913 (63%), Gaps = 43/913 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+T++F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D          + G      YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRESEIVDEAES 908
           R+ +++  D  E 
Sbjct: 863 RVCDADEEDSLEE 875


>gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
 gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH]
          Length = 880

 Score =  905 bits (2338), Expect = 0.0,   Method: Composition-based stats.
 Identities = 417/913 (45%), Positives = 585/913 (64%), Gaps = 43/913 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKITLTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  ++E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRISEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRESEIVDEAES 908
           R+ +++  D  E 
Sbjct: 863 RVCDADEEDSLEE 875


>gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
 gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756]
          Length = 847

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/894 (43%), Positives = 560/894 (62%), Gaps = 61/894 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K    VS+  EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M +MG +WNK 
Sbjct: 3   DFAKETIPVSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+S+R  LI+GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH +L D+ ++TVDF PNYD    EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMARIAHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++ C+A++D+ D+    L  ++ GPDFPT  ++LG  G   AY +GRG +V+
Sbjct: 183 PPHNLTEILNACIALVDDDDLPDSELFRLVPGPDFPTAGILLGNEGAIEAYRSGRGRVVM 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE      R+ I V+E+PYQVNKA ++E+IAE+V+EKR+  I+DLRDESD+ G R
Sbjct: 243 RARAEIETDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + IELKR A+A+V+LN LY++T+LQS+F++NMVAL    P+   L   LKAF+  R EVV
Sbjct: 303 IAIELKRDANAEVVLNNLYQHTALQSVFNINMVALLDGAPQTLGLRDALKAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ + L KARDRAH+L GLA+A+ NLD ++ +IR + +P  A+ +++ R W    +  
Sbjct: 363 TRRSIFDLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAA 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           L+    + S  + +DG  +LSE Q +AIL+LRL RLTGL +D IR E   L   I+E L+
Sbjct: 423 LLAERGEPSAGLQADG-YHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLE 481

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S +RL+ +I+ EL++++D+    RR+ IV     + +ED I  E+MVVT +H GY+K
Sbjct: 482 ILGSDARLMAVIRAELVAIRDQYGDARRSEIVADTGVIANEDLIAEENMVVTFTHAGYIK 541

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             P++ + AQRRGG+G+     ++EDFV  +F  STH +VLFFS+LG V+ +KV++LP  
Sbjct: 542 AQPVTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLPQS 601

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARGK ++N+LSL   E ITT++P  E        YV   T HG V++  L ++ +  
Sbjct: 602 GRSARGKPIVNLLSLAPSEGITTVLPVREF---QEGQYVCMVTAHGVVKKTPLMEYSRPR 658

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G  A+ LD  D +++V     + + +L T+ G  VRFP   +R   GR + GVRGISL
Sbjct: 659 SQGINAINLDPGDRLVAVCLSDGQREFMLFTRKGMAVRFPEDKVRPM-GRTARGVRGISL 717

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VIS  IV                                                
Sbjct: 718 DADDRVISAQIVDP---------------------------------------------- 731

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +Q ILT + KG+GK T+  ++R +NR GKG+ A   +  N  G +V    V +
Sbjct: 732 -------DQVILTATAKGYGKLTNVEEYRRTNRGGKGVIAIQTNARN--GQVVGALAVKE 782

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +D+++LVS+ GTLIR+ V  IR   R  +GV +   A DE++  +  I +++  
Sbjct: 783 SDELMLVSNGGTLIRIAVQGIRRTGRNAQGVRLIQLAPDEQLAGLALIADAQEE 836


>gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3]
 gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 851

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLGNPEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E      + ++  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFIFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI+M +                                              
Sbjct: 717 MQLEDGQQVIAMLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQTVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+E+R   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEVREMGRATQGVTLISLDEGTKLSGLQQI 833



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSK 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 630

Query: 898 RE 899
           +E
Sbjct: 631 KE 632


>gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
 gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis
           ATCC 51599]
          Length = 905

 Score =  904 bits (2337), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/914 (43%), Positives = 559/914 (61%), Gaps = 75/914 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             ++  K    +S+  EM+ S+L YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   W
Sbjct: 9   DQDQFAKETVPISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVW 68

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y+K AR+ G+VMGKYHPHG++AIYD + RMAQD+SLR  L++GQGNFGSVDGDPPAA
Sbjct: 69  NRPYLKSARVVGDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL+K A  ++ D+ KDTVDF PNYDGS  EP VL A+ PN+L+NG  GIAV MA
Sbjct: 129 MRYTEIRLRKIASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMA 188

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EVV  C+ +++NPD  +D L+E I  PDFPTGA+I G  G++  Y TGRG 
Sbjct: 189 TNIPPHNLHEVVAACLLLLENPDATIDELIEKIPAPDFPTGALIYGVAGVREGYRTGRGR 248

Query: 248 IVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +V+R  +H E      +R+ I+V EIPYQVNKA + +KIAELV EK+I  I+D+RDESD+
Sbjct: 249 VVMRAKTHFEDMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDK 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG RVVIELKRG +A+V+LN L++ T LQ  F +NMVAL   +P    L  +L+AF+A R
Sbjct: 309 QGMRVVIELKRGENAEVVLNNLFKLTQLQDSFGINMVALVDGQPRLLNLKQVLEAFLAHR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT Y LNKARDR H+L GLA+AV N+DE++ +I+ SP P  A+  L+ R+W A 
Sbjct: 369 REVVTRRTVYELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTPPVAKERLLARTWAAG 428

Query: 426 DIKDLIDLI-----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
              ++++              D +  +  DGT  LSEVQ   IL++RL RLTGL ++ I 
Sbjct: 429 IAAEMVERAAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIV 488

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPRRTRIVEGLLDMEDE 530
            E   +   I + LDIL+  +R+  II+ EL  V +E       PRR++I     +++ E
Sbjct: 489 TEYREVVDRILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIE 548

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  +DMVVT+S+ GY+K  PLS YR+QRRGG+G+     +D+D+V  LFI +TH ++L
Sbjct: 549 DLITPQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTIL 608

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G VY  KVW +P GS  +RG+ ++N+  L + E+IT ++P    +   +  YV  
Sbjct: 609 CFSDRGRVYWLKVWEVPQGSRASRGRPIVNMFPLAENEKITVVLPIKTFD---DEHYVFM 665

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  LSDF    ++G IA+ LD  D ++       E+D++L +  G+ VRF  
Sbjct: 666 ATSLGTVKKTALSDFSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSE 725

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVRG++L +G +VI+M +                              
Sbjct: 726 GDVRAM-GRTARGVRGMALEEGQKVIAMLVADDERRS----------------------- 761

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        +LT +E G+GKRT   +     R  KG+ A 
Sbjct: 762 -----------------------------VLTATENGYGKRTPLIEHTRHGRGTKGMIAI 792

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V + D+I+L++  G L+R  V+EIR   RAT+GV +    + + 
Sbjct: 793 QSSERN--GRMVAAILVEEGDEIMLITTGGVLVRTRVDEIREMGRATQGVTLIGVEEGDT 850

Query: 891 VVSVERIRESEIVD 904
           +  V+R+  S+  +
Sbjct: 851 LSRVQRVVGSDSPE 864



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 14/249 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  V   + LG VK+  LS +   R+ G     +   + D++    +      V+
Sbjct: 655 KTFDDEHYVFMATSLGTVKKTALSDFSNPRKAGIIAVDLD--EGDYLIGAAVTDGEHDVM 712

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G   +     +      ARG   +  ++L +G+++  ++   +         V+ 
Sbjct: 713 LFSDAGKAVRFSEGDVRAMGRTARG---VRGMALEEGQKVIAMLVADD-----ERRSVLT 764

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVR 707
           AT++G  +R  L +  +  R  K  + + S      +++     + ++I+L T  G  VR
Sbjct: 765 ATENGYGKRTPLIEHTRHGRGTKGMIAIQSSERNGRMVAAILVEEGDEIMLITTGGVLVR 824

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  IR   GR + GV  I + +GD +  +  V+ +D+                    G
Sbjct: 825 TRVDEIREM-GRATQGVTLIGVEEGDTLSRVQRVVGSDSPEVLAAVGESADGEAAAASEG 883

Query: 768 DTEEITSLK 776
                 S  
Sbjct: 884 PEAAGESPS 892


>gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
 gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel]
          Length = 898

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 441/897 (49%), Positives = 645/897 (71%), Gaps = 6/897 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  VSI  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G +++K Y K
Sbjct: 5   NNVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPH +AAIYD+L RMAQD+SL L LI+ QGNFGS+DGDPPA+ RYTE 
Sbjct: 65  AARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL +AAHFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG GG+AVGM+TNIP+H
Sbjct: 125 RLARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD C+A IDNPDI  D L++I+ GPDFPTG  ILG  GI++A+ TG+G+I+++G 
Sbjct: 185 NLGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTILGDAGIRSAFMTGKGTIIVQGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H+E     ++ I++ EIPYQVNKA ++E+I ELV+EKRI  I DLRDES++ G RV IE
Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  S  V+LNQ+   T L++ FS+N + L+  KP+  +L+ I+  F+ +R+EV+ RRT
Sbjct: 305 LKKQVSHQVVLNQILGLTPLRTSFSINTLVLDNNKPKVMSLLDIISTFIEYRKEVLTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID 432
           ++ L K R++AH+ +G+ IAV N+D+V+ IIR S +   A + L++  W+A + +K++I+
Sbjct: 365 QFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEMIE 424

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L+ DS   + +D    L+ VQ ++ILE++L RLT L ++ +  +L S+   IK+  ++L 
Sbjct: 425 LVADSKSIVVND-VCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELLG 483

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++  LL ++K  L  +K +L  PR+T I     + + ED I +EDMVVTV+  GY+KRV 
Sbjct: 484 NKESLLKLVKNGLEEIKAKLAVPRKTTIDYSHFETDVEDLIPKEDMVVTVTMSGYIKRVK 543

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS YRAQRRGGKGR G  +R+ED +T+LF+V+THTSVLFFS++G VYK KV++LP+G P 
Sbjct: 544 LSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKVYKLPLGDPT 603

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG++L+NI  L++ E IT++MP PE++     L ++FAT  GN+RRN LSDF  +  +G
Sbjct: 604 SRGRSLVNIFPLSENEVITSVMPLPENQEDTEQLNILFATASGNLRRNALSDFQYVPSNG 663

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AK 731
           KIAM LD  D ++SV+ CT EN +L++TKLG+ +RF +S IR F GR S GVR I L ++
Sbjct: 664 KIAMVLDESDTLISVKVCTAENHVLISTKLGKSIRFAVSNIRQFKGRISDGVRAIRLSSE 723

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVISM++++  + D + +  Y+K +  ++RL+  +   I     +  V+  +S++   
Sbjct: 724 EDQVISMSVLIAMEVDSETKDLYLK-IPLEKRLLVKEDGVINQGVANMLVDLGLSQDVFM 782

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +   E+FILTV+E GFGKRTS+Y++R + R G G+     ++ N  G +++ F V  ND
Sbjct: 783 SMVQNEEFILTVTENGFGKRTSAYEYRTTLRGGVGVVNILTTRRN--GNVISSFSVESND 840

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            I+L+++KG LIR+ VN+IRI  R+T+GV +F T K E+VVSV ++ + +   + + 
Sbjct: 841 HIMLITNKGKLIRIAVNDIRIVGRSTQGVTLFKTDKQEKVVSVAKVIDHKDESDIDD 897


>gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H]
          Length = 924

 Score =  904 bits (2336), Expect = 0.0,   Method: Composition-based stats.
 Identities = 463/894 (51%), Positives = 625/894 (69%), Gaps = 10/894 (1%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K Y K AR  G+VMGK
Sbjct: 1   MRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IYDA+ RMAQ WS+R+ LI+GQGNFGSVDGD PAA RYTE RL KA+ FLLD
Sbjct: 61  YHPHGDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLD 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ +DTVDF+PNYD S  EP VL A +PN+LVNG  GIAVGMATNIPTHN GEV+D  +A
Sbjct: 121 DIERDTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I NP I+LD LM+II GPDFPTG +I+GR+GI+ AY TGRGSI +R  + IE+   DR+
Sbjct: 181 MIANPAIELDELMQIIPGPDFPTGGIIMGRSGIRRAYETGRGSIPVRARAEIEEIRKDRQ 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQVNKA + EKIA+LVR K I  I+D+RDESDR G RVVIELKR A+ DV+L
Sbjct: 241 AIIITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQLYR+T LQ+ FS NM+AL+  KP    L  IL+AF+ FREEV++RR ++ LNKARDR 
Sbjct: 301 NQLYRFTQLQTSFSANMLALDDGKPRTMGLKDILEAFLRFREEVILRRARFDLNKARDRG 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+LVGL +AVAN+DEV+ +IR +P+  TAR  LM R W+AS++  L++LI D    I  D
Sbjct: 361 HLLVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVI-ID 419

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G + L+E Q R ILELRL RLTGL R+ I+ EL  +  +I E L I+ SR R + ++++E
Sbjct: 420 GKVRLTEAQARGILELRLQRLTGLEREKIQGELGEVAQKIGELLAIIESRPRRMEVMREE 479

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           LL+ + E+ TPR T I + L D  DE  I    MVVT++  G++KR PL V+R+Q RGG+
Sbjct: 480 LLAARAEVATPRVTEISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQNRGGR 539

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           GR+    R +D +   F   TH  V+FFSS G  Y+ KVW LP  +P A+G+AL+N+L  
Sbjct: 540 GRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHLPEAAPTAKGRALVNLLPE 599

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
              + IT ++P P+DE  W +L++ FAT  GNVRRN+LSDF  I  SG IAMKLD  D +
Sbjct: 600 LGTDSITAVLPLPQDEELWEDLHLAFATASGNVRRNRLSDFRNIRASGLIAMKLDEGDSL 659

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           + V TC +  D+ L TK  +C+RF I+   +RVFAGR S GVRGI L +GD VIS+ I+ 
Sbjct: 660 IGVATCREGQDVFLATKNARCIRFQITDETLRVFAGRGSTGVRGIRLGEGDAVISLCILN 719

Query: 743 HADADYDERICYMKHMSAQRRLI------SGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           H DA  +ER  Y++  +A+RR        S + E ++  +    + G++++ER +EL+ +
Sbjct: 720 HVDASVEERAAYLRMANAKRRAENAALDDSAEDETVSGDEETVEITGDLTQERFEELEQQ 779

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E+ +LTV++ GFG+R+S+YD+R+S R G+GI     S       +V   P  D   ++LV
Sbjct: 780 EEILLTVTDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLV 839

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +D G LIR+PV+++R+ SR   GV +F     E V+ V  + E +  +E ++ E
Sbjct: 840 TDTGRLIRLPVSQVRVMSRQASGVTLFRLNDTETVICVFPVLEDDT-EEGDTDE 892



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCV 706
           T  G  RR+   D+    R G+    +         E++         D++L T  G+ +
Sbjct: 787 TDGGFGRRSSAYDYRVSGRGGQGITNMTFSANRRGKEVVGTLPTLDGTDVMLVTDTGRLI 846

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R P+S +RV + R + GV    L   + VI +  VL  D +  +     +  +       
Sbjct: 847 RLPVSQVRVMS-RQASGVTLFRLNDTETVICVFPVLEDDTEEGDTDEGSEAGAKVIGEAG 905


>gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 832

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/900 (42%), Positives = 560/900 (62%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I S +IT E+++S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K Y
Sbjct: 5   QHGHIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGK+HPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA RYT
Sbjct: 65  KKSARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDT+D+ PNYDGS  EP+VL ARYPN+LVNG  GIAVGMATNIP
Sbjct: 125 ESRMSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGE +DG +AV DNP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGS+ IR
Sbjct: 185 PHHLGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIILGRSGIRRAYESGRGSLTIR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE+ S  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR G R+V
Sbjct: 245 AKVEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R A+A+V+LN L++ T++QS F VNM+AL   +P+  +L  +L  ++  ++ V+ R
Sbjct: 305 IEVRRDANANVVLNNLFKQTAMQSSFGVNMLALVDGQPKVLSLKEVLYHYLEHQKVVIKR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA +RAH+L GL IA+ ++DE++ IIR S + E AR +LM+R           
Sbjct: 365 RTAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMER----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RL+GL R+ I  E   L   I E   IL
Sbjct: 414 ---------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELLKLIDELKAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +  ++++ II+ E+  +K+     RRT I  G    +EDED I RE+ V+T++H GY+KR
Sbjct: 459 ADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLEMIEDEDLIPRENSVLTLTHNGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P   
Sbjct: 519 LAANTYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPEFG 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G  ++N+L++++GE +T ++   E +    + Y +F TK G  +R  +  F  I  
Sbjct: 579 RQAKGLPIVNLLNIDKGEHVTAMIRVTEFK---EDAYFIFTTKTGVTKRTPVDQFANIRT 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L   D+++SV       +I++ T  G  VRF    IR   GR++ GVRGI L 
Sbjct: 636 NGLIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDDIRSM-GRSAAGVRGIKLR 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+ M I+                                                 
Sbjct: 695 EGDFVVGMEILEPG---------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q IL V+E G+GKRT   ++R+ +R G G++   ++  N  G + AV  V+ +
Sbjct: 709 -------QEILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKN--GKMCAVKAVDGS 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I+L++  G LIR+ VN+I +  R+T+GV +   A+ E V +V R+++ E   + E  +
Sbjct: 760 EDIMLITINGMLIRMDVNDISVIGRSTQGVRLIRLAEGEYVATVARVKKEEDAPDDEEID 819



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 66/405 (16%), Positives = 149/405 (36%), Gaps = 33/405 (8%)

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           + ++   ++  L   +A+  +VV IIR        R    +R+   +   ++I+   D  
Sbjct: 443 EYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERYSDERRTEITAGGLEMIE---DED 499

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                +  + L+       L     R    G   ++    +    ++  L   +  + L 
Sbjct: 500 LIPRENSVLTLTHNGYIKRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLLFTSTHDTILF 559

Query: 499 GIIKQELLSVK-DELDTPRRTRIVEGLLDMEDEDCIV-----------REDMVVTVS-HL 545
              K ++   K  E+    R      ++++ + D              +ED     +   
Sbjct: 560 FTSKGKVFRAKGYEIPEFGRQAKGLPIVNLLNIDKGEHVTAMIRVTEFKEDAYFIFTTKT 619

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G  KR P+  +   R  G     + +R++D +  + +      ++  +S G + + K   
Sbjct: 620 GVTKRTPVDQFANIRTNG--LIAITLREDDDLISVHLTDGTKEIIIGTSDGMLVRFKEDD 677

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +      A   A +  + L +G+ +  +              ++  T++G  +R   S++
Sbjct: 678 IRSMGRSA---AGVRGIKLREGDFVVGMEILE------PGQEILVVTENGYGKRTPESEY 728

Query: 666 IQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              +R       + +   +  ++ +V+      DI+L T  G  +R  ++ I    GR++
Sbjct: 729 RLQSRGGLGLKTMQITDKNG-KMCAVKAVDGSEDIMLITINGMLIRMDVNDI-SVIGRST 786

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            GVR I LA+G+ V ++A V   +   D+     +        I 
Sbjct: 787 QGVRLIRLAEGEYVATVARVKKEEDAPDDEEIDSEIEGESDSGID 831


>gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43]
          Length = 850

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/891 (42%), Positives = 547/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S ++D++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVRDMLTRAETENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELTAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L    QVI+M +                                              
Sbjct: 717 MQLDDAQQVIAMLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELTAVKAEFGDARRSK 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 630

Query: 898 RE 899
           +E
Sbjct: 631 KE 632


>gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 914

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/916 (41%), Positives = 543/916 (59%), Gaps = 77/916 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++  +W
Sbjct: 29  PMTQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDW 88

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K AR  G+VMGKYHPHG+ AIYD + RMAQ +SLR +LI+GQGNFGSVDGD  AA
Sbjct: 89  NRPYRKSARAVGDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAA 148

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K AH +L D+ K+TVDF PNYDG+ +EP+VL ++ PN+LVNG  GIAVGMA
Sbjct: 149 MRYTEIRLAKIAHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMA 208

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EVVD C+ ++ +PD  +D LMEII  PDFPT  +I G  G+K+ Y TGRG 
Sbjct: 209 TNIPPHNLNEVVDACLHLLHHPDASIDELMEIIPAPDFPTAGIIYGINGVKDGYRTGRGK 268

Query: 248 IVIRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +V+R   H E     + + I+V E+PYQVNK  + E++AELV EK++  I+ ++DESD+ 
Sbjct: 269 VVMRAKCHFEDIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKS 328

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P    L  ++  F+  R 
Sbjct: 329 GMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQPRLCNLKDLVSVFLQHRR 388

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR+R HVL GLA+A+AN+D+ + IIR +P P  A+  LM +SW++  
Sbjct: 389 EVVTRRTVFELRKARERGHVLEGLAVALANIDDFIAIIRNAPTPPVAKAGLMAQSWDSQL 448

Query: 427 IKDLIDLID----------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +++++                    D    +G DG   LS+ Q + IL++RL RLTGL +
Sbjct: 449 VREMLTRTRADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQ 508

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLD 526
           D I  E       + + LDIL+   R+  II QEL +++ E      + RR+ I     D
Sbjct: 509 DKIVAEYKDAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARRSIIEHSAQD 568

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  ED I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D++  LFI +TH
Sbjct: 569 LCTEDLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTH 628

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNN 645
             +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L  GE+I  ++P      S   +
Sbjct: 629 DYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQDGEKINVVLPLTGAMRSFPAD 688

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            YV  AT  G V++  L +F    + G IA  LD  D ++       ++D++L +  G+ 
Sbjct: 689 RYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLDDGDYLIGAALTDGQHDVMLFSDGGKA 748

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VRF  + +R  + R + GVRG+ L +G  VI+M +                         
Sbjct: 749 VRFDENDVRPLS-RQARGVRGMLLEEGQSVIAMLVAED---------------------- 785

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                         + Q +LT +E G+GKRT   ++    R  K
Sbjct: 786 ------------------------------ETQSVLTATENGYGKRTGIVEYTRHGRGTK 815

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ A   S  N  G +VA   V+ +D+I+L++DKG L+R  V+EIR   RAT+GV + + 
Sbjct: 816 GMIAIQQSGRN--GKVVAATLVHADDEIMLITDKGVLVRTRVSEIRELGRATQGVTLIAL 873

Query: 886 AKDERVVSVERIRESE 901
            +  ++  ++RI E++
Sbjct: 874 DEGAKLSGLQRIVEND 889



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/240 (20%), Positives = 94/240 (39%), Gaps = 14/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + +G VK+  L  +   R+GG     +   D D++    +      V+ F
Sbjct: 685 FPADRYVFMATSMGTVKKTALDEFSNPRKGGIIAGHLD--DGDYLIGAALTDGQHDVMLF 742

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +   S QARG   +    L +  +    M   ED        V+ AT
Sbjct: 743 SDGGKAVRFDENDVRPLSRQARGVRGM----LLEEGQSVIAMLVAED----ETQSVLTAT 794

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R  K  + +       ++++      +++I+L T  G  VR  
Sbjct: 795 ENGYGKRTGIVEYTRHGRGTKGMIAIQQSGRNGKVVAATLVHADDEIMLITDKGVLVRTR 854

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  I+L +G ++  +  ++  DA+  +        +          
Sbjct: 855 VSEIREL-GRATQGVTLIALDEGAKLSGLQRIVENDANVADAPIDAPANAEGSADDGAPD 913


>gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
 gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016]
          Length = 900

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/894 (43%), Positives = 557/894 (62%), Gaps = 42/894 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL  V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEMVRDAFGDVRRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---ADKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  +              
Sbjct: 663 SNVRANGLIAVNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKEAEESPV--------- 713

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                                D +      ++   + +         T+         + 
Sbjct: 714 --------------------LDENGNPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLADG 753

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   +  +LTV+E G+GKRT   ++    R  +G+ +  VS+ N  G++V   
Sbjct: 754 DQVVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERN--GSVVGAV 811

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V D D+ ++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E
Sbjct: 812 QVEDGDEFMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 865



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692
                   N+  V+  T++G  +R  LS++    R  +  + +        ++       
Sbjct: 756 VVSLIVPKNDGDVLTVTENGYGKRTVLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVED 815

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++ ++ T  G  VR  ++ +    GRN+ GV  I  A+ + V+ +  +   +       
Sbjct: 816 GDEFMMITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEETELPEG 874

Query: 753 CYMKHMSAQRRLISGDTEEITSLKND 778
                     +      +   + + +
Sbjct: 875 EEADATEQVPQAQDPQADNDDAAEQE 900


>gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37]
 gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37]
          Length = 898

 Score =  904 bits (2335), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/939 (42%), Positives = 569/939 (60%), Gaps = 98/939 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    ++ ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK 
Sbjct: 3   EFVSDVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK AH LL DL K+TVDF PNYDG+   P V+  + PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+I++ DI +D L+E I GPDFPT  +I GR GI +AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGIINGRKGIIDAYHTGRGKIKV 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + IE      RE IVV E+PYQVNKA ++EKIAE V++K+I  I+ LRDESD+ G R
Sbjct: 243 RAKADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+KRG   +V+LN LY  T +Q  F +N VAL+  +P+ F L  +L+AF+  R EVV
Sbjct: 303 MVVEVKRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQPKLFNLKEMLEAFILHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLAI++AN++ ++ +IR S  P  A+  L  + WN   +  
Sbjct: 363 TRRTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             D   +++EVQ +AIL+LRL +LTGL  + I  E   L 
Sbjct: 423 MLEASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I   L IL +  RL+ +I++EL  +K     PRRT I     D+  ED I  ED+VVT
Sbjct: 483 EIIAALLFILENPERLMEVIREELEEIKANFADPRRTEITASETDLSIEDLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y +QRRGGKG++   M+DEDF+  L + STH ++L FS+ G +Y  
Sbjct: 543 LSHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTRGRLYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S QARG+ ++NIL L +GERIT I+P  +     ++ +V  AT +G V++  
Sbjct: 603 KVFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYA---DDKFVFMATANGTVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--------- 712
           LS + +   SG IA+ L+  +E++ V      N+I++ +  G+ VRF  +          
Sbjct: 660 LSAYSRPRNSGLIAINLNEDNELIGVGITDGSNEIMIFSDAGKVVRFKEAEESAVLDENG 719

Query: 713 ----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
                           +R   GR + GVRGI L +G++V+S+ I                
Sbjct: 720 APVLDEEGNPEIKVKGVRAM-GRTATGVRGIKLKEGEKVVSLIIPNETG----------- 767

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      ILT +E G+GKRT   D
Sbjct: 768 ------------------------------------------HILTTTENGYGKRTPLED 785

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +   +R+ +G+ +  VS+ N  G +V    V+ ND+I+L++++GTL+R  V+E+ +  R 
Sbjct: 786 YSSKSRATQGVISIKVSERN--GKVVGAVQVDTNDEIMLITNRGTLVRTRVSEVSVVGRN 843

Query: 877 TKGVVIFSTAKDERVVSVERIRESE-----IVDEAESTE 910
           T+GV +  TA+ E++V+++RI E E       DE   +E
Sbjct: 844 TQGVTLIRTAEGEKIVALQRIEEIEDLPVYEEDEVTGSE 882



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 87/261 (33%), Gaps = 22/261 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  LS Y   R  G     + + +++ +  + I      ++ F
Sbjct: 640 YADDKFVFMATANGTVKKTALSAYSRPRNSG--LIAINLNEDNELIGVGITDGSNEIMIF 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----------------PF 636
           S  G V + K         +     L    +     +    M                  
Sbjct: 698 SDAGKVVRFKEAEESAVLDENGAPVLDEEGNPEIKVKGVRAMGRTATGVRGIKLKEGEKV 757

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQE 693
                     +++  T++G  +R  L D+   +R+ +  + +       +++        
Sbjct: 758 VSLIIPNETGHILTTTENGYGKRTPLEDYSSKSRATQGVISIKVSERNGKVVGAVQVDTN 817

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I+L T  G  VR  +S +    GRN+ GV  I  A+G++++++  +   +        
Sbjct: 818 DEIMLITNRGTLVRTRVSEV-SVVGRNTQGVTLIRTAEGEKIVALQRIEEIEDLPVYEED 876

Query: 754 YMKHMSAQRRLISGDTEEITS 774
            +              ++   
Sbjct: 877 EVTGSETTELNAEASADQTEE 897


>gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4]
          Length = 850

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ +  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  +P++L +R PN+L+NG  GIAVGMATNIP HNL EVVD C+ 
Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP   +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRAATHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM +SW++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKSWDSSLVREMLTRAEAENAAAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                      ++ +  DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I +EL +VK E    RR++I     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITVMIGEELAAVKAEFGDARRSKIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L  GE+I  ++P  E      + YV   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQDGEKINVVLPVKEFS---ADKYVFMTTALGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDDGDYLIGAAITDGAHDVMLFSDAGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI+M +                                              
Sbjct: 717 MQLDDGQQVIAMLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSERN--GRVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  +++I
Sbjct: 783 VDTEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQI 833



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYRDVMAQIADLLDILARPERITVMIGEELAAVKAEFGDARRSK 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F     E++  V  +
Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQDGEKINVVLPV 630

Query: 898 RE 899
           +E
Sbjct: 631 KE 632


>gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
 gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965]
          Length = 810

 Score =  903 bits (2334), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/889 (43%), Positives = 548/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRILF M + G   +K
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR  G+V+GKYHPHG+AA+YDAL RMAQD+S+R  LIEG GNFGS+DGDPPAA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +DG + +ID PD     LM++I+GPDFPTG +I+GR GI+ AY TGRG I 
Sbjct: 183 IPPHNLREAIDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  + +IVVTEIPY+V K+ ++EKIAELV+E+RI  I DLRDE+DR G R
Sbjct: 243 IRAHAQIETAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL RGA+ +VILNQLY++T +Q  + +  +AL   +P   TL  +L+ ++  +++V+
Sbjct: 303 VVIELARGANPNVILNQLYKFTPMQVSYGIIQLALVDGQPRVLTLKQLLRHYLDHQKDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA  RAH+L GL IA+ ++D V+ +IR S   + AR  LM+          
Sbjct: 363 VRRTRHDLAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ +  E   L  EI+    
Sbjct: 413 ----------------NFNLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S   +L IIKQEL  ++D     RRT+IV G  + E ED I  ED+V+T++H GY+K
Sbjct: 457 VLNSEKMVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  YR+QRRGG+G +G+  R+EDFV+ LFI +TH ++LFF++ G VY  +V  +P  
Sbjct: 517 RLPVDTYRSQRRGGRGITGIQTREEDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG A++N++ + Q E++T ++P  +      +  ++  T+ G V+R  L++F  I 
Sbjct: 577 SRTARGTAVVNLIEIGQDEQVTAVIPVRDFG---EDRDLLMCTRRGVVKRTALAEFGHIR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G IA+ LD  DE+++V+      D+LL T+ GQ +RFP++ +R   GR + GV GI L
Sbjct: 634 RGGLIALSLDPGDELVAVQLTDGRGDVLLLTRQGQAIRFPVAEVRTM-GRTARGVMGIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+V+ M +                                                 
Sbjct: 693 EEGDEVVGMEVADD---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L ++++G+GKRT   +FR   R GKGIRA  ++  N  G +     V  
Sbjct: 707 -------EAHLLVITDRGYGKRTPVREFRAQGRGGKGIRAITLTARN--GQVAGFEVVRP 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++++L+S  G ++RVPV+++ I  RA +GV +      +RV +V  + 
Sbjct: 758 GEEVMLISQGGIVLRVPVDQVSIQGRAAQGVTVMRLEPGDRVSAVATVA 806



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 9/215 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ ++  T  G   R P+   R    R   G+ GI   + D V  + I    +   
Sbjct: 499 LIAEEDVVITLTHRGYIKRLPVDTYRS-QRRGGRGITGIQTREEDFVSQLFIATTHENLL 557

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y + +                   +   +  ++         +++ +L  + 
Sbjct: 558 FFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIGQDEQVTAVIPVRDFGEDRDLLMCTR 617

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  KRT+  +F    R   G+ A  +   +    LVAV   +    ++L++ +G  IR 
Sbjct: 618 RGVVKRTALAEFGHIRRG--GLIALSL---DPGDELVAVQLTDGRGDVLLLTRQGQAIRF 672

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           PV E+R   R  +GV+     + + VV +E   + 
Sbjct: 673 PVAEVRTMGRTARGVMGIRLEEGDEVVGMEVADDE 707



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
              K +    +   G+  +       + +    +E   ++L  +E  ++T++ +G+ KR 
Sbjct: 459 NSEKMVLDIIKQELGEIRDRFGDDRRTKIVAGAAEFEVEDLIAEEDVVITLTHRGYIKRL 518

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
               +R   R G+GI      + + +  L   F    ++ ++  +++G +    V+E+  
Sbjct: 519 PVDTYRSQRRGGRGITGIQTREEDFVSQL---FIATTHENLLFFTNRGKVYHRRVHEVPE 575

Query: 873 ASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           ASR  +G   V +    +DE+V +V  +R+     +
Sbjct: 576 ASRTARGTAVVNLIEIGQDEQVTAVIPVRDFGEDRD 611


>gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017]
 gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 871

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/910 (42%), Positives = 552/910 (60%), Gaps = 51/910 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S +  +  I    + DEM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   SSDPAQDRIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTP 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI G GNFGS+D DPPAA
Sbjct: 64  DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPPAA 123

Query: 128 ERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRLQ  +   LL D+ ++TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGM
Sbjct: 124 MRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGEV+DG VA+I NP+I    LM+II GPDFPTG  ILG  GI+ AY TGRG
Sbjct: 184 ATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGTAGIREAYTTGRG 243

Query: 247 SIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ IE        DRE I++TE+P+Q NKAA++E+IAE V +KR+  I+D+RDE
Sbjct: 244 SITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIRDE 303

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIELKR A   V+LN LY+ T +Q+ F  NM+AL G  P+  TL   L  F+
Sbjct: 304 SDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLALVGGDPQLLTLRQFLSVFL 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FRE+ ++RRT++ L KA++R H+L GL IA+ NLD V+++IR + +   AR+ELM    
Sbjct: 364 EFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELM---- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q  AIL+++L RLT L  + I  E   L  
Sbjct: 420 ----------------------DGFGLSDTQADAILQMQLRRLTALEAEKIEREHQDLQE 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+ R R+L II+ E+  +K +  +PRRT I   L D++D D I  +  V+ V
Sbjct: 458 RIADLEDILARRERVLEIIETEVTELKTKFASPRRTLIEANLADLDDIDLIANDQAVILV 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR+P+  + AQ R  +GR+G  ++++D V   F    H SVLFFS  G VY  +
Sbjct: 518 TEQGYVKRMPVDTFNAQSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYCLR 577

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +++P+ S  ARG  L+ +L + + E+IT+++P  E      + Y+V  T  G +++  L
Sbjct: 578 AYQIPVSSRTARGVPLVQLLPIPREEKITSVIPVSEFS---EDEYLVMMTAGGFIKKTAL 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRN 720
           + F  I  +G IA+ L+  D +  V     E+ I++ ++ G  + F      +R   GR 
Sbjct: 635 AAFSNIRANGLIAISLEEGDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRPL-GRA 693

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVR + L +GD+ I M I+  A  +                  + D ++  +   D  
Sbjct: 694 TRGVRAMRLREGDEFIGMDILSSAVVETL--------------GNATDADDEETDDPDVL 739

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           VE + +EE  + ++    ++L ++  GFGKR     FR+ NR+GKG+ AT   K+     
Sbjct: 740 VEDDGNEEESETVEQPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTPDQ 799

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L A+  VN  D+++LV+ +G +IR  V +I   SRA  GV +    +D+ + +V  +   
Sbjct: 800 LAALRIVNAEDELMLVTSRGIVIRQAVTDISSQSRAATGVRVQRLDEDDYIAAVALVPPE 859

Query: 901 EIVDEAESTE 910
           ++ DE   TE
Sbjct: 860 DLSDEEGETE 869



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR-----SGKIAMKLDSRDEILSVETCTQENDIL 697
               +V+  T +G  +R  ++ F   NR     +     KL + D++ ++     E++++
Sbjct: 754 QPGPWVLVITTNGFGKRVPVAQFRLQNRAGKGVTATKFKKLKTPDQLAALRIVNAEDELM 813

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           L T  G  +R  ++ I     R + GVR   L + D + ++A+V   D   +E    ++
Sbjct: 814 LVTSRGIVIRQAVTDISS-QSRAATGVRVQRLDEDDYIAAVALVPPEDLSDEEGETELE 871


>gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
 gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1]
          Length = 915

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 403/941 (42%), Positives = 578/941 (61%), Gaps = 91/941 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   +++         ++I DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 3   MSDTTPTAER------LPINIEDEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G EWN+ Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R LL++GQGNFGSV
Sbjct: 57  RELGNEWNRSYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL D+ K+TV F PNYDGS +EP VL A+YPN+LVNG  
Sbjct: 117 DGDSAAAMRYTEVRMTRLASELLADIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A+ID+P++D  ALM+ I GPDFPTG  I G+ GI + 
Sbjct: 177 GIAVGMATNIPPHNLGEVIDATCALIDDPELDPRALMQYIPGPDFPTGGSIHGQAGIVSG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR  + IE     +E I+V E+PYQVNKA ++E+IAELVREK++  I+DLR
Sbjct: 237 YETGRGSVIIRAKTVIETRKDGKETILVHELPYQVNKAKLVERIAELVREKKVTGISDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIE+KR   ADV+LNQL+++T++QS F +N +AL   +P   +L   L A
Sbjct: 297 DESDREGMRVVIEIKRDHQADVVLNQLFKHTAMQSSFGINALALVDGRPVTLSLKAFLVA 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R EVV RRT + LNKA+ RAH+L GLA+A+AN+D ++ +IR +     A+  LM  
Sbjct: 357 FLKHRREVVTRRTIFELNKAQARAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAE 416

Query: 421 SWNASDIKDLIDLI---DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            W    ++ ++      +D       +G   LS  Q +AIL++RL RLTGL  + I  E 
Sbjct: 417 RWERGPVEAMLARALGENDVRSAQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEF 476

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  EI     IL+S   L+ +I+QELL +K+    PRRT IVE + D    D I  E+
Sbjct: 477 EEILKEIAYLKGILASDGVLMDVIRQELLEIKERYANPRRTLIVEAVGDFSIADLIPEEE 536

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTVSH GY+KR P   Y+AQRRGGKG+S   ++DEDFV  +F+ STH ++  F+  G 
Sbjct: 537 MVVTVSHGGYIKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGR 596

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V+K KV+ +P GS  +RGKA++N+L L +GE++  I+P P  E+ W +  ++FAT+ G +
Sbjct: 597 VFKLKVYEIPSGSRLSRGKAIVNLLQLEEGEKVRQIVPIPVAEAEWGSWDLLFATRRGLI 656

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVET--------CTQEND-------------- 695
           ++  LS++  I  +G  A+ L   D+++ V            + ++              
Sbjct: 657 KKTVLSNYANIRTTGIRAINLLEIDDLIGVALLPSSGDAELPEGDEGVDEELPEDESSAD 716

Query: 696 -----ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
                I+L  + G+ VRF    +R   GR S GVRG+ L   D VI++ ++         
Sbjct: 717 AAPGRIMLFAQGGKAVRFADEKVR-RVGRVSQGVRGMRLKGEDGVIALTVID-------- 767

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                            +LT++EKG+GK
Sbjct: 768 -------------------------------------------GEAVGQLLTITEKGYGK 784

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R+    +    R  +G+   DV   ++ G +V+   V++ D++++++D+GT++R  V+ I
Sbjct: 785 RSDLSQYPTKGRGTQGVIGMDV--RDKTGNVVSALVVDEQDEVMVITDQGTVLRTKVDSI 842

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDE-AESTE 910
           R+A RAT GV + + A+ ERVVSV R+ E+E VD   E  E
Sbjct: 843 RVAGRATMGVRVLNVAEGERVVSVARLAEAEEVDAFDEEGE 883



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 76/147 (51%), Gaps = 8/147 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQ 704
           ++  T+ G  +R+ LS +    R  +  + +D RD+    +S     +++++++ T  G 
Sbjct: 774 LLTITEKGYGKRSDLSQYPTKGRGTQGVIGMDVRDKTGNVVSALVVDEQDEVMVITDQGT 833

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R  + +IRV AGR ++GVR +++A+G++V+S+A +    A+ +E   + +       L
Sbjct: 834 VLRTKVDSIRV-AGRATMGVRVLNVAEGERVVSVARL----AEAEEVDAFDEEGEPIAPL 888

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQ 791
             GD      + +D   + + SEE   
Sbjct: 889 TEGDALGEDGVADDGVADASASEEEGA 915


>gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
 gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5]
          Length = 834

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/901 (42%), Positives = 549/901 (60%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI  I DLRDESDR G R
Sbjct: 243 MRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L   I E  +
Sbjct: 413 -----------------FGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    +   ++ Y+ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPVENFD---SDNYLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M +V                                                
Sbjct: 692 DDNDEVIGMDVVDQ---------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 706 -------ELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S+  D  E  
Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDSDEEG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2]
 gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2]
          Length = 920

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/946 (41%), Positives = 556/946 (58%), Gaps = 107/946 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   EVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF  NYDG+ + P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDGC+A+ID+  +  D LME I+GPDFPT  +I GR GI  AY TGRG + +R  +
Sbjct: 187 LGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      +E I+VTEIPYQVNKA ++EKIAELV++K+I  I +LRDESD++G R+VIE
Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG +A+V+LN LY+ T ++S+F +N VAL   +P+   L  +L AF+  R EVV RRT
Sbjct: 307 LRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KAR++AH+L GLA+A++N+D V+ +I+ SP+   A+ +L+ + W   D+  +++ 
Sbjct: 367 VYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLER 426

Query: 434 IDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               +              DG  +LS  Q +AIL+LRL +LTGL R+ + N+   L  +I
Sbjct: 427 AGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL+ +I++EL +V++E    RR+ IV    D   ED I  E +VVT+S+
Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  P+  YRAQ+RGG+G+S   ++D+D+V  L +  TH ++L F++ G V+  + +
Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTNAGKVFWLRTF 606

Query: 605 RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNN------------------ 645
            LP G   +RGK ++N+L  L   ERIT I+    D                        
Sbjct: 607 ELPQGGRASRGKPIVNLLPALGADERITAILRLDADMVRQQKAGGEEDIVDVDDAADVIE 666

Query: 646 ----------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                                  ++  AT  G V+R  L++F +   SG IA+KL   + 
Sbjct: 667 DETDSDVEVEGEVEAVTDTVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEH 726

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V       DI+L  + G+ VRF  S +RV + R + GVRGI LA+G  VIS+ +   
Sbjct: 727 LVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDVISLIVPEE 785

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                                   ILT 
Sbjct: 786 NG-----------------------------------------------------QILTA 792

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE G+GKRT   D+    R G+G+ A  +++ N  G LV    V   + I+L+S++GTL+
Sbjct: 793 SEHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLV 850

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           R  VN++  + R T+GV +   A  E +  +  I E E V+E +  
Sbjct: 851 RTGVNQVSTSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEDGE 896



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 100/244 (40%), Gaps = 15/244 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VKR  L+ +   R  G     V +++ + + ++ I   H  ++  +  G
Sbjct: 689 PFIFMATSSGIVKRTALANFARPRSSG--LIAVKLQEGEHLVNVAITQGHEDIMLVARNG 746

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +    ++ + S  ARG   I         ++   +          N  ++ A++HG 
Sbjct: 747 KAVRFHQSKVRVMSRLARGVRGI---------KLAEGVDVISLIVPEENGQILTASEHGY 797

Query: 657 VRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+D+    R   G IAM ++    E++       E DI+L +  G  VR  ++ +
Sbjct: 798 GKRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGVNQV 857

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
              +GRN+ GVR I LA G+ +  +A +   +   +E     + +  +    +  ++   
Sbjct: 858 -STSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEDGEADEVLDGEATPEAPKSDASD 916

Query: 774 SLKN 777
             + 
Sbjct: 917 DAEE 920


>gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
 gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885]
          Length = 810

 Score =  903 bits (2333), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/893 (43%), Positives = 551/893 (61%), Gaps = 85/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   +K
Sbjct: 3   EYTHGKILPVDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR  G+V+GKYHPHG+AA+YDAL RMAQD+S+R  LIEG GNFGS+DGDPPAA R
Sbjct: 63  PFKKSARTVGDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  L+ DL KDTVDF PN+D + QEP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSPLAMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +DG + +ID+PD     LM++I+GPDFPTG +I+GR GI+ AY TGRG I 
Sbjct: 183 IPPHNLREAIDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIVGREGIRQAYTTGRGIIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE ++  + +IVVTEIPY+V K+ ++EKIAELV+E+RI  I DLRDE+DR G R
Sbjct: 243 IRAHAQIETSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL RGA+ +VILNQLY++T +Q  + + ++AL   +P   TL  +L+ ++  +++V+
Sbjct: 303 VVIELARGANPNVILNQLYKFTPMQVSYGIILLALVDGQPRVLTLKQLLRHYLDHQKDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT++ L KA  RAH+L GL IA+ ++D V+ +IR S   + AR  LM+          
Sbjct: 363 LRRTRHDLEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  L+E Q +AIL++RL RLTGL R+ +  E   L  EI+    
Sbjct: 413 ----------------SFSLTEKQAQAILDMRLQRLTGLEREKVEEEYQELLKEIEYLRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S   +L IIKQEL  ++D     RRT+IV G  D E ED I  ED+V+T++H GY+K
Sbjct: 457 VLNSEKMVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+QRRGG+G +G+  R+EDFV  LFI +TH ++LFF++ G VY  +V  +P  
Sbjct: 517 RMPVNTYRSQRRGGRGVTGIQTREEDFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG A++N++ + + E++T ++P  +      +  ++  T+ G V+R  L++F  I 
Sbjct: 577 GRTARGTAVVNLIEIERDEQVTAVIPVRDFG---EDRDLLMCTRRGVVKRTALAEFSHIR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G IA+ LD  DE+++VE      D+L+ T+LGQ +RFP++ +R   GR + GV GI L
Sbjct: 634 RGGLIALALDPGDELVAVELTDGRGDVLVVTRLGQAIRFPVAEVRTM-GRAARGVMGIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+V+ M +                                                 
Sbjct: 693 DEGDEVVGMEVADD---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L +++ GFGKRT   +FR   R GKGIRA  ++  N  G +     V  
Sbjct: 707 -------EAHLLVITDLGFGKRTPVREFRAQGRGGKGIRAISLTARN--GRVAGFEVVRP 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            ++++L+S  G ++RVPV+++ +  RA +GV +      +RV +V  +     
Sbjct: 758 GEEVMLISQGGIVLRVPVDQVSVQGRAAQGVTVMRLEPGDRVSAVATVAHKGD 810



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 66/156 (42%), Gaps = 6/156 (3%)

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
              K +    +    +  +       + +    ++   ++L  +E  ++T++ +G+ KR 
Sbjct: 459 NSEKMVLDIIKQELAEIRDRFGDDRRTKIVSGAADFEVEDLIAEEDVVITLTHRGYIKRM 518

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
               +R   R G+G+      + +    +  +F    ++ ++  +++G +    V+EI  
Sbjct: 519 PVNTYRSQRRGGRGVTGIQTREEDF---VAQLFIATTHENLLFFTNRGKVYHRRVHEIPE 575

Query: 873 ASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           A R  +G   V +    +DE+V +V  +R+     +
Sbjct: 576 AGRTARGTAVVNLIEIERDEQVTAVIPVRDFGEDRD 611


>gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
 gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574]
          Length = 820

 Score =  903 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/885 (42%), Positives = 540/885 (61%), Gaps = 86/885 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+  +K + K 
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I G+VM  +HPHG+ AIYD++ R+AQD+S R  LIEG GNFGS+DGDPPAA RYTE R
Sbjct: 67  AGIVGKVMQDFHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ K+TVDF PNYD   +EPV+L A+ PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GEV+DG + +IDNP++  D LM++I+GPDFPTGA I+GR GI+ AY TGRGSI IR  +
Sbjct: 187 IGEVIDGVIMMIDNPNVTPDELMKVIKGPDFPTGAKIMGRDGIRAAYRTGRGSIKIRAQA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  +  R  I+V EIP+QVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL
Sbjct: 247 TIETKNNGRSAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +VILNQLY++T +Q  F + M+AL   +P+   L  +L  ++  +++V+ RRTK
Sbjct: 307 KKDANPNVILNQLYKFTQMQESFGIIMLALVNNQPKVLNLAQVLFYYLEHQKDVITRRTK 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA  RAH++ GL IA+A+LDEV++IIR S   E A++ L+                
Sbjct: 367 YELKKAEARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVT--------------- 411

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ  AI+E+RL  LTGL  + +  E   L  +I     +L+  
Sbjct: 412 -----------NFNLTEVQAEAIVEMRLRSLTGLEVEKLEKEYKDLLAKIDYLRSVLADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++LGIIK EL  VK +   PRRT I      D + ED I  E MVVT+++ GY+KR+ L
Sbjct: 461 KKVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDIEDLIDEEGMVVTITNQGYIKRISL 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+QRRGGKG + +  ++EDFV  LF+ STH  +LFF++ G  Y+ KV  +P     A
Sbjct: 521 DTYRSQRRGGKGITAMGTKEEDFVKHLFVASTHHYLLFFTNQGKAYRLKVHEIPEAGRTA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  L+N+L ++ GE +TT++P  +        Y+  ATK G V++  LS++    R G 
Sbjct: 581 KGTPLVNLLYISSGEYVTTVIPIKDFT---EEAYLFMATKQGVVKKTNLSEYDTSRRDGI 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ LD  DE+++VE      +I+L+T+ G  +RFP   +R   GR + GV+GI+L   D
Sbjct: 638 NAINLDESDELVAVELTHGREEIILSTREGMAIRFPEEDVRPM-GRTARGVKGITLTGDD 696

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++M +V                                                    
Sbjct: 697 SVVNMDVVK--------------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+  G+GKRT+  ++R   R GKGI     S  N  G +V    V D+D+I
Sbjct: 706 --DGGDLLVVTANGYGKRTNLDEYRTQTRGGKGIINIKTSPRN--GPVVGALVVKDDDEI 761

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++S +G +IR+   ++    R T+GV +   A+++ +V+V ++ 
Sbjct: 762 MMISAEGIMIRLAAKDVSTFGRNTQGVTLMKVAENDHIVAVAKVA 806



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 95/239 (39%), Gaps = 20/239 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLA 730
           + L   DE++ +   ++  +     K G    F ++ ++         R+  G+    L 
Sbjct: 384 IALAHLDEVIKIIRESRTTE---EAKQGLVTNFNLTEVQAEAIVEMRLRSLTGLEVEKLE 440

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K  +     ++   D          K +   +  ++   ++    +          +   
Sbjct: 441 KEYK----DLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADPRRTVISNEAAGDFDI 496

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L  +E  ++T++ +G+ KR S   +R   R GKGI A    + + +  L   F  + +
Sbjct: 497 EDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTKEEDFVKHL---FVASTH 553

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDEA 906
             ++  +++G   R+ V+EI  A R  KG  + +    +  E V +V  I   +  +EA
Sbjct: 554 HYLLFFTNQGKAYRLKVHEIPEAGRTAKGTPLVNLLYISSGEYVTTV--IPIKDFTEEA 610


>gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
 gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3]
          Length = 906

 Score =  903 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/934 (42%), Positives = 564/934 (60%), Gaps = 93/934 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    ++ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +  +WNK 
Sbjct: 3   EFAPDVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P V+  + PN+L+NG  GIAVGMATNI
Sbjct: 123 TEIRMDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+I+NPD+ +D L+E I GPDFPT  +I GR GI + Y TGRG + I
Sbjct: 183 PPHNLGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGIINGRKGIIDGYKTGRGKLKI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V E+PYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R
Sbjct: 243 RAKARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KRG   +VILN LY  T +QS F +NMVAL+  +P+   L  +L AF+  R EVV
Sbjct: 303 MVIEVKRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQPKLLNLKEMLHAFILHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR RAH+L GLAI++AN++ ++ +IR S  P  A+  L  + W   ++  
Sbjct: 363 TRRTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++                   D   ++++ Q +AIL++RL +LTGL  + I NE   L 
Sbjct: 423 MLEASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I   L IL +  RL+ +I +EL  V+      RRT I     D+  ED I  ED+VVT
Sbjct: 483 EIITALLFILENPHRLMEVITEELNDVRANFADARRTEITASETDLCMEDLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PL+ Y AQRRGGKG+S   M+DEDF+  L + STH ++L FS+ G +Y  
Sbjct: 543 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTRGRLYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S QARG+ +INIL L QGERIT I+P    +   ++ +V  AT +G V++  
Sbjct: 603 KVFQLPLASRQARGRPIINILPLEQGERITAILPVRTYD---DDKFVFMATANGTVKKTA 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--------- 712
           LS + +   SG IA+ L+  +E++       EN+I++ +  G+ VRF  +          
Sbjct: 660 LSAYSRPRASGLIAINLNDDNELIGALITNGENEIMIFSDAGKVVRFKEAEETLVVDEQG 719

Query: 713 ----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
                           +R   GR + GVRGI L +G++ +S+ +                
Sbjct: 720 NPVLDENGVQEIKFKGVRPM-GRTATGVRGIKLKEGEKAVSLIV---------------- 762

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      ILT +E G+GKRT   D
Sbjct: 763 -------------------------------------PNATGHILTCTENGYGKRTPLSD 785

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +   +R+ +G+ +  VS+ N  G +V    V++ND+I+L+S++GTL+R PV+ + I  R 
Sbjct: 786 YASKSRATQGVISIKVSERN--GKVVGAVQVDENDEIMLISNRGTLVRTPVHGVSIVGRN 843

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           T+GV +  T  DE++V+++RI E   +   E  E
Sbjct: 844 TQGVTLIRTRDDEKIVALQRIEEVHELPVYEDDE 877



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               +  V   +  G VK+  LS Y   R  G     + + D++ +    I +    ++ 
Sbjct: 639 TYDDDKFVFMATANGTVKKTALSAYSRPRASG--LIAINLNDDNELIGALITNGENEIMI 696

Query: 592 FSSLGFVYKEKVWR----LPIGSPQARGKALINILSLNQGERITTIMP------------ 635
           FS  G V + K       +         +  +  +       +                 
Sbjct: 697 FSDAGKVVRFKEAEETLVVDEQGNPVLDENGVQEIKFKGVRPMGRTATGVRGIKLKEGEK 756

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQ 692
                      +++  T++G  +R  LSD+   +R+ +  + +       +++      +
Sbjct: 757 AVSLIVPNATGHILTCTENGYGKRTPLSDYASKSRATQGVISIKVSERNGKVVGAVQVDE 816

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            ++I+L +  G  VR P+  +    GRN+ GV  I     ++++++  +           
Sbjct: 817 NDEIMLISNRGTLVRTPVHGV-SIVGRNTQGVTLIRTRDDEKIVALQRIEEVHELPVYED 875

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                     +    + +   +  ND ++  
Sbjct: 876 DETTQNIPVEQKEGAELDPEITESNDETLSE 906


>gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10]
 gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10]
          Length = 834

 Score =  903 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/901 (42%), Positives = 549/901 (60%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVREKRI  I DLRDESDR G R
Sbjct: 243 MRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L   I E  +
Sbjct: 413 -----------------FGLSHEQAQAILDMRLQRLTGLEREKIENEYQELLARIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFADERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    +   ++ Y+ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPVENFD---SDNYLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIMGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M +V                                                
Sbjct: 692 DDNDEVIGMDVVDQ---------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 706 -------ELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S+  D  E  
Sbjct: 757 EEDLMIITASGTIIRTSMEGISTMGRYAQGVKLINIREDDAVGTVCRADKSDEPDADEEG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
 gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685]
          Length = 918

 Score =  903 bits (2332), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/921 (39%), Positives = 548/921 (59%), Gaps = 28/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+++R +L++GQGNFGS+
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++     +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E +VS+ER+ E E   +    
Sbjct: 885 ETLVSLERVAEDESESDLSDA 905



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 107/271 (39%), Gaps = 40/271 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTGGSDDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S +  +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDEAADNENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  ++L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPVDSKIVSLITFSPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++    ++ +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +S+  V   +++ D     +     +    +
Sbjct: 888 VSLERVAEDESESDLSDASVISSVTEPETGN 918


>gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
 gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080]
          Length = 876

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/920 (44%), Positives = 559/920 (60%), Gaps = 73/920 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E      +E  + +  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MAET----PKEIAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WNK Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR  L++GQGNFGS+
Sbjct: 57  NELNNDWNKAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TVDF  NYDGS Q PVVL  R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV GC+A IDNP+ID+D LME I GPDFPTGA+I GR GI  A
Sbjct: 177 GIAVGMATNIPPHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAIINGRAGIVQA 236

Query: 241 YATGRGSIVIRGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG I +R  +  I   S  ++ I++ EIPYQ+NKA ++E+IAELV+EK++  I +L
Sbjct: 237 YRTGRGRIYVRARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITEL 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIEL+RG   DV+LN LY  T LQS+  +NMVAL   +P    L+ +++
Sbjct: 297 RDESDKDGLRVVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQPRTLNLLEMIE 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT YLL KAR+R HVL GLAIA+ N+DE++ +I+ SP P  A+  L+ 
Sbjct: 357 AFVRHRREVVTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVA 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471
           + W + ++  +++   + +                 +LS  Q +AILELRL RLTGL  +
Sbjct: 417 KPWQSGEVTGMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHE 476

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E +   +EI   L+IL    RL  +I+ EL  + +E    R T I +   D+  ED
Sbjct: 477 KLLQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDDRLTEITDSTHDLSVED 536

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED VVT+SH GY K   LS Y+AQRRGG GRS   ++DEDFV  L I STH ++L 
Sbjct: 537 LITEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILC 596

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS LG VY  KV+ +P+ S  ARG+ ++N+L L++GERIT+I+P    E      ++  A
Sbjct: 597 FSDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVEGYE---EGHFIFMA 653

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  +  F +    G  A++L++ D ++         D++L +  G+ VRF   
Sbjct: 654 TARGIVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQ 713

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   GR + GVRGI L    ++IS+ +                               
Sbjct: 714 AVRAM-GRTARGVRGIKLGDEHRLISLIV------------------------------- 741

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                    +  ILTVSEKG+GKRT + +F    R  KG+ A  
Sbjct: 742 ----------------------PQADSTILTVSEKGYGKRTDTEEFPCKGRGTKGVIAMA 779

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +  N  G LV    V+  D+I+L+SD+GT +R  V EI    R T+GV +  T +DE++
Sbjct: 780 TTAKN--GPLVGAVQVSTGDEIMLISDQGTAVRTRVEEISTLGRNTQGVRVIKTREDEKL 837

Query: 892 VSVERIRESEI-VDEAESTE 910
           V + RI E +  V EAES E
Sbjct: 838 VRLSRIVEDDDAVPEAESAE 857



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 53/415 (12%), Positives = 125/415 (30%), Gaps = 23/415 (5%)

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H L GL       +   +++  +   E  +     R     ++K+L++   D   T
Sbjct: 464 ELRLHRLTGLEHEKLLQEYSDKLVEIAGYLEILQDPDRLRQVIRDELKELVEEFGDDRLT 523

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC---LDILSSRSRL 497
             +D T  LS        E R+  ++  G    ++  +               +     +
Sbjct: 524 EITDSTHDLSVEDLITE-EDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFV 582

Query: 498 LGIIKQELLSVKDELDTPRR------------TRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             ++     +         +            +R   G   +        E +   +   
Sbjct: 583 EHLLIASTHATILCFSDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVE 642

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS-SLGFVYKEKVW 604
           GY +   + +  A+    K       R          +     ++  + + G      + 
Sbjct: 643 GYEEGHFIFMATARGIVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLS 702

Query: 605 RLPIGSPQARG--KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                        +A+       +G ++              +  ++  ++ G  +R   
Sbjct: 703 SEGKAVRFQEQAVRAMGRTARGVRGIKLGDEHRLISLIVPQADSTILTVSEKGYGKRTDT 762

Query: 663 SDF--IQINRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +F        G IAM        ++     +  ++I+L +  G  VR  +  I    GR
Sbjct: 763 EEFPCKGRGTKGVIAMATTAKNGPLVGAVQVSTGDEIMLISDQGTAVRTRVEEISTL-GR 821

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           N+ GVR I   + ++++ ++ ++  D    E        S +  +   + +   S
Sbjct: 822 NTQGVRVIKTREDEKLVRLSRIVEDDDAVPEAESAETVGSPESGVPEANGDIGES 876


>gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125]
 gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A
 gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.]
 gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans]
 gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125]
          Length = 833

 Score =  902 bits (2331), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/888 (42%), Positives = 554/888 (62%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  L+ D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NPDI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +++I+V EIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKTEIEEH-HGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++A +  V+
Sbjct: 302 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L   I E   
Sbjct: 413 -----------------FELSYEQAQAILDMRLQRLTGLERDKIEAEYKELIERIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++ELL +K++ +  R+T I       EDED I R+++V+T++H GY+K
Sbjct: 456 ILADHEKVLDIIREELLELKEKYNDERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q+RGG+G  G+   ++DFV  LF  ++H ++LFF++ G VY+ K + +P  
Sbjct: 516 RLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L + Q E I+TI+P  E      + Y+ F TK G  +R +LS F  I 
Sbjct: 576 GRTAKGIPIINLLQIEQDEYISTIIPIEEFT---EDHYLFFMTKDGIAKRTQLSSFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   DE+  V     + ++++ T+ G  +RF  + +R+  GR + GV+GISL
Sbjct: 633 RGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVRLM-GRTATGVKGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+ M IV                                                
Sbjct: 692 TGDDHVVGMDIV------------------------------------------------ 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+EKGFGKRT   D+RI  R GKGI+  ++++ N  G LV++  V+ 
Sbjct: 704 -----EDGQDVLIVTEKGFGKRTPIADYRIQTRGGKGIKTCNITEKN--GPLVSLKVVSV 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  +++++  G +IR+ V +I +  R T+GV +   A+ E V +V R+
Sbjct: 757 DHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGEEVATVARV 804


>gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
 gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16]
          Length = 830

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/888 (42%), Positives = 547/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   +    I +EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EEDVPRLRERQIDEEMKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ ++YDA+ RMAQD+S R +L+ G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  L+ DL KDTVDF  NYDG+ +EP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESKMSKISMELVRDLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NPDI +  LME I GPDFPTG  ILGR+GI+ AY+TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALAKNPDISIPELMEYIPGPDFPTGGEILGRSGIRKAYSTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I +    ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I +LRD SDR G  
Sbjct: 243 VRAKTEIVENK-GKQSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMN 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R A+ +VILN L++ T+LQ+ F +NM+AL   +PE   L   L+ ++A + EV+
Sbjct: 302 IVIDVRRDANPNVILNNLFKQTALQTSFGINMLALVNGRPEVLNLKQTLEQYLAHQVEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L GL IA+ ++DE++ +IR S   E AR  L++R         
Sbjct: 362 RRRTQFDLNKAEARAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD +  E   +   I E   
Sbjct: 413 -----------------FELSYDQAQAILDMRLQRLTGLERDKLEQEYKDVLARIAELRA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +++ +I++E+L++K++ +  RRT I      +EDED I R+++V+T++H GY+K
Sbjct: 456 ILASDEKVIDVIQEEILAIKEKFNDERRTVISASEEHLEDEDLIPRQNIVITITHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YRAQ+RGGKG  G+   D+DFV  LF  +TH +VL F++ G  Y+ K + +P  
Sbjct: 516 RLPISTYRAQKRGGKGVQGMGTNDDDFVQHLFTTNTHHTVLVFTNKGKAYRLKGYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G   IN+L  + GE I+T++P    E   ++ Y+ F T+HG  +R KLS F  I 
Sbjct: 576 GRTAKGIPAINLLPFDPGETISTVIPI---ECFDDDSYLFFVTEHGIAKRTKLSAFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+ L   D +  V       ++++ TK G  +RFP + +R+  GR + GV+GI+L
Sbjct: 633 KGGLFAINLREGDSLHGVRLTDGNREVMIGTKQGMAIRFPETDVRLM-GRTAGGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D V+ M +V                                                
Sbjct: 692 SENDGVVGMEVVDEN--------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+EKG+GKRT   ++R+ +R GKGI+  +++  N  G LV++  V D
Sbjct: 707 --------QSVLVVTEKGYGKRTPLDEYRVQSRGGKGIKTCNITDKN--GPLVSLKMVAD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D I++V+  G +IR  V+ I    R T+GV +    + E V +V R+
Sbjct: 757 EDDIMIVTANGIIIRTNVDGISTTGRNTQGVTLIRVNEGEEVATVARV 804


>gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 851

 Score =  902 bits (2330), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/891 (42%), Positives = 548/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +LI+GQGNFGS+DGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDG+  +P VL +R PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++N +  +D L+EII  PDFPT  +I G  G+++ Y TGRG +V+R  +H E+    + 
Sbjct: 181 LLNNSEATIDELIEIIPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRATTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  IL+ F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEILQCFLSHRREVLTRRTIYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM + W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + ++ + +DG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 RSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  +I  EL SVK E    RR+RI     ++  ED I  +DMVVT+SH G
Sbjct: 481 LLDILARPERITTMIGDELTSVKAEFGDARRSRIELNATELNTEDLITPQDMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS YRAQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYWVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ ++N+  L +GE+I  ++P  E      + +V  AT  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIVNMFPLQEGEKINVVLPVKEFS---ADKFVFMATSLGTVKKTPLEAFS 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  + G IA+ LD  D ++        +D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RPMKKGIIAVGLDEGDYLIGASITDGAHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G QVI++ +                                              
Sbjct: 717 MQLEDGQQVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +EQ +LT +E G+GKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGSEEQTVLTATENGYGKRTPIAEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+  DQI+L++  G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 783 VDAEDQIMLITTAGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++          +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITTMIGDELTSVKAEFGDARRSR 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   +  ++T+S  G+ K     ++R   R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIET 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G   V +F   + E++  V  +
Sbjct: 574 L---FIANTHDYILCFSNRGRVYWVKVYEVPQGSRNSRGRPIVNMFPLQEGEKINVVLPV 630

Query: 898 RE 899
           +E
Sbjct: 631 KE 632


>gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
 gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109]
          Length = 808

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/893 (44%), Positives = 560/893 (62%), Gaps = 86/893 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M + G ++NK Y 
Sbjct: 2   ESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDA+ RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE
Sbjct: 62  KSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ + A  LL DL K+TVDF PNYDGS QEP+VL AR PN+L+NG  GIAVGMATNIP 
Sbjct: 122 VRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV +  +A I NP I L  LM I+ GPDFPT   I G  GI  AY TG+G I +R 
Sbjct: 182 HNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGSDGIAEAYRTGKGLIRLRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + +E+  G RE I++ E+PYQVNK  ++E+I ELV++K+I  I D+RDESDR+G RVVI
Sbjct: 242 RTFLEQ-RGGREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRVVI 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L++   A  ILNQL+ +T++Q  + +N+VA+   +PE  +L  +L  F+  R EV+VRR
Sbjct: 301 QLRKDELAQPILNQLFAHTNMQVTYGINLVAIVNNRPELLSLKDLLTEFLKHRREVIVRR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KA +RAH+L GL IA+ +LD+++ +IR + +P TAR +L++R            
Sbjct: 361 TLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVER------------ 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ +AILE+RL RLTGL R  I +E   L  +I    +IL+
Sbjct: 409 --------------FTLTEVQAQAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILA 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + + +  +I+ +L+ ++D    PRRT I+    ++  ED I  EDMVVTVSH GY+KR P
Sbjct: 455 NEALVYQLIEADLIDLRDRYGDPRRTEIIPETAELTLEDLIPDEDMVVTVSHQGYIKRNP 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L++YR+QRRGGKGR+G+ ++++DFV+ L+I STH   L FS+LG +Y  KV  +P+GSP 
Sbjct: 515 LNLYRSQRRGGKGRTGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPS 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA++N+L+    E++TTI+P  E        Y+V ATK G +++ +L +F +    G
Sbjct: 575 ARGKAIVNLLNFGSQEKLTTILPIREFV---PEHYLVMATKRGIIKKTELMNFSRPRSGG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA  LD  DE++SV       ++ L T LG+ +RF    +R   GR++ GVRG+++A+ 
Sbjct: 632 LIACTLDEGDELVSVALTDGNKEVFLGTSLGKIIRFAEQDVRDM-GRSARGVRGMTVAED 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++ M I+    A                                              
Sbjct: 691 DCIVGMEILSAEGA---------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILTV+  G+GKRT   ++R+  R G G+ A  ++  N  G +V +  V ++D+
Sbjct: 705 -------ILTVTANGYGKRTRHEEYRLQKRGGSGLLALRITDRN--GPVVGIIQVTEDDE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I+L++D+G +IR+PV  I +  R T+GV +  T  +ERVVS+ R+ E     E
Sbjct: 756 IMLITDRGKIIRLPVTGISLIGRVTQGVKLIDTEPEERVVSIARLAEKGDEGE 808


>gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
 gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71]
          Length = 885

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/904 (43%), Positives = 553/904 (61%), Gaps = 69/904 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I+ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAREISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL KDTVD+  NYDG+ + P VL  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMSKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+ C+A+I +  I +D LM  + GPDFPTGA+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLREVVNACLALIGDAHISIDDLMRYLPGPDFPTGAIINGRAGIVQAYRTGRGRIYV 242

Query: 251 RGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +  I      R+ I+V EIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARAEVITDEKTGRDTIIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL++G   DV+LN LY  TSLQ++F +NMVAL   +P    L  IL+AF+  R EVV
Sbjct: 303 VVIELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQPRVLNLKEILEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +LL KAR+R HVL GLAIA+AN+D+V+ +++ SP+P  AR  L+   W   ++  
Sbjct: 363 TRRTLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTS 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG   LS  Q +AIL+LRL RLTGL  + +  E     
Sbjct: 423 MLERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI + LDIL  R RLL +I++EL  +  E    RRT I +   D+  ED I  ED VVT
Sbjct: 483 AEIADLLDILQDRERLLAVIREELEEIATEFGDERRTEIRDSQEDLTAEDLITPEDRVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  PL+ Y+ QRRGG G++ + ++DEDFV  L I +TH ++L F++LG VY  
Sbjct: 543 LSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTNLGKVYWI 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+++P+    +RG+ ++N+L L++GER+T+I+P  E     ++ ++  AT  G V++  
Sbjct: 603 KVYQIPVAGRSSRGRPMVNLLQLDEGERVTSILPLEE---HSDDRFIFMATAQGYVKKTD 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L+ F     +G  A+ L   D ++         D++L +  G+  RF  SA+R   GR S
Sbjct: 660 LASF-APRSAGLRAIVLGEDDVLVGTAITDGNQDVMLFSSEGKATRFSESAVRAM-GRAS 717

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI+LA G ++IS+ +                                         
Sbjct: 718 RGVRGINLADGHRMISLLV----------------------------------------- 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +LTVSE G+GKRT+  DF    R GKG+ A   S+ N  G L
Sbjct: 737 ------------PDARGTVLTVSENGYGKRTTVDDFPTKGRGGKGVIAMASSERN--GRL 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V   D+++L+S++GTL+R   +++    R T+GV I  T + E +V VERI +S 
Sbjct: 783 VGALQVFSGDELMLISNQGTLVRTQCDQVSQLGRNTQGVRIIRTKEGETLVRVERIVDSG 842

Query: 902 IVDE 905
              +
Sbjct: 843 EEGD 846



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/261 (16%), Positives = 100/261 (38%), Gaps = 16/261 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    +  +   +  GYVK+  L+ +  +  G +        ++D +    I   +  V+
Sbjct: 638 EEHSDDRFIFMATAQGYVKKTDLASFAPRSAGLRAIVLG---EDDVLVGTAITDGNQDVM 694

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSS G   +     +      +RG   +  ++L  G R+ +++             V+ 
Sbjct: 695 LFSSEGKATRFSESAVRAMGRASRG---VRGINLADGHRMISLL------VPDARGTVLT 745

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R  + DF    R GK  + + S      ++        ++++L +  G  VR
Sbjct: 746 VSENGYGKRTTVDDFPTKGRGGKGVIAMASSERNGRLVGALQVFSGDELMLISNQGTLVR 805

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                +    GRN+ GVR I   +G+ ++ +  ++ +  + D+        +A     S 
Sbjct: 806 TQCDQVSQL-GRNTQGVRIIRTKEGETLVRVERIVDSGEEGDKVAAAADDSAAVSVSTSV 864

Query: 768 DTEEITSLKNDSSVEGNISEE 788
           D    +   + S       ++
Sbjct: 865 DEYPASDNNDASESPVESGDD 885


>gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 840

 Score =  901 bits (2329), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/891 (42%), Positives = 551/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   I    I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EEKFSQIIDRDINVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S+R +L+EG GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG  QEPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NP+I    LM+ I+GPDFPT A ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHNLGEVIDGVQALIKNPEISSLELMDYIKGPDFPTAAYILGRSGIRQAYTTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEHN-NKARIVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN LY++T+LQS F +NM+A+   +P+  TL  +L  ++  + EVV
Sbjct: 302 VVIELRRDVNPNVVLNNLYKHTALQSTFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DEV+ +IR S + E AR  L+ R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I +E N L  +I E  +
Sbjct: 413 -----------------FGLSLEQAQAILDMRLRRLTGLEREKIEDEYNELLQKIAEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +++     RRT I  G   + DED I +E++V+T++H GY+K
Sbjct: 456 ILANEQLVLKIIGEELQEIRERYADERRTEITIGEESILDEDLIPQEEVVITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +D DFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHYLMFFTDRGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++     +   +N Y+ FATK G V++  + D+I I 
Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIEVERFD---DNKYLFFATKQGIVKKTPIEDYINIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      ++++ T  G  +RFP S +R   GR + GV+GI+L
Sbjct: 633 KGGLIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFPESDVRSM-GRAATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD VI M +V+                                               
Sbjct: 692 DEGDSVIGMDVVVPG--------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +L V+  G+GKRT   ++R  +R GKGI+  +V++ N  G +V +  V D
Sbjct: 707 --------QDVLIVTANGYGKRTPISEYRTQSRGGKGIKTINVTEKN--GTVVGLKVVKD 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GTLIR  +  I    R T+GV + +  +D+ V +V R  +S
Sbjct: 757 EEDLMIITASGTLIRTSMEGISTMGRNTQGVKLINIREDDTVATVCRTDKS 807



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 77/538 (14%), Positives = 173/538 (32%), Gaps = 43/538 (7%)

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               +   IV  E      K  +   +   V   R     DL+    R      + +   
Sbjct: 328 TFGINMLAIVNNEPKILTLKDVLSHYLQHQVEVVRRRTEFDLKKAEARAHILEGLRIALD 387

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              +VI       +  ++   +        +  +  L   L+       E +      LL
Sbjct: 388 HIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAILDMRLRRLTGLEREKIEDEYNELL 447

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            K  +           +AN   V++II          +E+ +R  +    +  I      
Sbjct: 448 QKIAE-------YREILANEQLVLKIIGEEL------QEIRERYADERRTEITIGEESIL 494

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +     + ++   T  I  L +       R                    +++    
Sbjct: 495 DEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFVEHLFVTNSHHY 554

Query: 498 LGIIKQELLSVK---DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542
           L        + +    E+    RT     ++++   +     + V+ V            
Sbjct: 555 LMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIEVERFDDNKYLFFA 614

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+ P+  Y   R+GG     V +R++D + D+ +   +  V+  ++ G   +  
Sbjct: 615 TKQGIVKKTPIEDYINIRKGG--LIAVNLREDDTLIDVKLTDGNEEVIMGTAQGMSIRFP 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  ++L++G+           +       V+  T +G  +R  +
Sbjct: 673 ESDVRSMGRAATG---VKGITLDEGD------SVIGMDVVVPGQDVLIVTANGYGKRTPI 723

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R   G   + +  ++  ++ ++    E D+++ T  G  +R  +  I    GR
Sbjct: 724 SEYRTQSRGGKGIKTINVTEKNGTVVGLKVVKDEEDLMIITASGTLIRTSMEGISTM-GR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           N+ GV+ I++ + D V ++     ++ +  E          Q     G        + 
Sbjct: 783 NTQGVKLINIREDDTVATVCRTDKSEEEDQEGEAESSQDQGQAVEGHGSEPGQDPNEE 840


>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168]
 gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY]
 gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A
 gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis]
 gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis]
 gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168]
 gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195]
          Length = 821

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/889 (43%), Positives = 555/889 (62%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV      +EDED I RE++VVT++H GYV
Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E       LY+ F TKHG  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFN---AELYLFFTTKHGVSKRTSLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V        I++ TK G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L V+EKG+GKRT + ++R  +R GKG++   +++ N  G LVAV    
Sbjct: 708 --------ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + +++++  G LIR+ +N+I I  R T+GV +   A++E V +V  +
Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
 gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127]
          Length = 880

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+DL         + G      YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEDVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + EEI+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEEISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILTV++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTVTQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
 gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5]
          Length = 821

 Score =  901 bits (2327), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/889 (43%), Positives = 555/889 (62%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV      +EDED I RE++VVT++H GYV
Sbjct: 457 ILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDLIERENIVVTLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E       LY+ F TKHG  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVTEFN---AELYLFFTTKHGVSKRTSLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++ V        I++ TK G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L V+EKG+GKRT + ++R  +R GKG++   +++ N  G LVAV    
Sbjct: 708 --------ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVAVKATK 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + +++++  G LIR+ +N+I I  R T+GV +   A++E V +V  +
Sbjct: 758 GEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
          Length = 880

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/905 (45%), Positives = 579/905 (63%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+DL         + G      YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++ ++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEALLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium]
          Length = 890

 Score =  900 bits (2326), Expect = 0.0,   Method: Composition-based stats.
 Identities = 428/889 (48%), Positives = 620/889 (69%), Gaps = 12/889 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  + + +EM+ SYL YA++VI+ RA+PD+RDG K VHRRIL+ + ++G +  K + K
Sbjct: 8   DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I GEVMGKYHPHG++AIY+ + RMAQD+S+ + LI+GQGNFGS+DGD  AA RYTE 
Sbjct: 68  SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +  +L DL  +TV FRPNYDGS QEP VL  R P++L+NG  GIAVGMATNIP H
Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++D C A+++NP ++L  +ME ++GPDFPTG  ILG +GI NA+ TGRGSIV+RG 
Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSGILNAFRTGRGSIVMRGK 247

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E+  GD+E IVVTEIPYQVNKA ++EKI EL R+K +  I ++RDES+R G R+VIE
Sbjct: 248 ASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVIE 307

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR  ++ VILNQLY++T LQ  FS N++AL    P+   L   L  F+ FR +V+VRRT
Sbjct: 308 IKRDGNSQVILNQLYKHTQLQMNFSANVLALVKGVPQTLGLKASLTCFLEFRYDVIVRRT 367

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KARD+AH+L+G A+A++++D+V+ +I+ + + ++A   LM  +W+A+ IK  + L
Sbjct: 368 RYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSYLAL 427

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +       G      LSE+Q  AIL+LRL +LTG+ +++I+++L S    I+E +DIL  
Sbjct: 428 LQGPQAESGPY--YRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYIDILGK 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+  I+  E  ++K +  TPRR+ I+    D+EDED I  E+MVVT+S  GY+KRVPL
Sbjct: 486 PERVRKIMTDEFKTIKADYPTPRRSEILPAEDDIEDEDLIPSEEMVVTISFGGYIKRVPL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S YRAQ RGGKGRSG+ M++ED+V D+ + +TH  +LFF+++G VY+  V +LPIG+PQA
Sbjct: 546 STYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQLPIGTPQA 605

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+A+IN+L + + E+IT+I+   ++    +   ++F T  G VRRN +SDF +I  +GK
Sbjct: 606 KGRAIINVLPIEKDEKITSILDVSKE--MDDASTLLFITSKGQVRRNAVSDFERIQSNGK 663

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            AM L+  + +++V+TC  +N +LL T+ G  +RF  + +RVF+GR S GVRGI LA  D
Sbjct: 664 RAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDD 723

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +IS +++   + D  ER  Y++  +A+R +         +   D++VEG +S+ER  EL
Sbjct: 724 TIISASVLEGFNVDPAERALYLRARAAERGIQG------ETEDQDTTVEGALSDERLLEL 777

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +  EQ+ILT+++ GFGKRTS Y++R + R G G     +S  N  G +V  FPV   DQI
Sbjct: 778 QEHEQYILTITDLGFGKRTSGYEYRTTGRGGLGANGILLSAKN--GHVVNAFPVIPQDQI 835

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +L+++KG L+R  VN+IRIA R T+GV++    KDERVV+V RI E+E 
Sbjct: 836 MLITNKGRLLRCGVNDIRIAGRRTQGVILMRLEKDERVVNVTRIEETEE 884


>gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 899

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/936 (43%), Positives = 570/936 (60%), Gaps = 98/936 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A+I NPD+ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLALIQNPDLTILELMDYIPGPDFPTAAIINGKKGIEQAYLTGRGKVYMRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYSQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH L GLAIA+AN+D ++ +IR SP P  A+  L  R W   +++ +++
Sbjct: 366 TVFDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLE 425

Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              + +              DG  Y+SE Q +AIL+LRL +LTGL  + I  E  +L   
Sbjct: 426 KAGEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLEL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL++  RL+ +I+ EL+ +K++    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLYILATPERLMEVIRDELVEIKEQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT I+P  E      + Y+  AT  G V++  L+
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITAILPVREYA---EDKYIFMATAFGTVKKTPLT 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA----------- 712
            + +   SG IA+ L+  D ++ V+     N+I+L T  G+ VRF  +            
Sbjct: 663 AYSRQRASGIIAVNLNDGDSLIGVDITDGSNEIMLFTDAGKVVRFKEAEETTVVDENGNP 722

Query: 713 --------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
                         +R   GR + GVRGI +A  DQ +   IV                 
Sbjct: 723 VLDEEGNPEIRFKGVRPM-GRTATGVRGIKMA-DDQRVVSLIVPKT-------------- 766

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                 +  ILTV+E G+GKRT   D+ 
Sbjct: 767 --------------------------------------DGAILTVTENGYGKRTQLEDYP 788

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             +R+ +G+ +  VS+ N  GA+V    V+DND+I+++S++GTL+R  VNE+    R T+
Sbjct: 789 SKSRATQGVVSIKVSERN--GAVVGAVQVDDNDEIMIISNRGTLVRTRVNEVSTVGRNTQ 846

Query: 879 GVVIFSTAKDERVVSVERIRESEIVD----EAESTE 910
           GV++  T  +E+VV ++RI E E+ +    + E  E
Sbjct: 847 GVILIRTIDEEQVVGLQRIEEIEVTESDLIDIEDVE 882



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 91/262 (34%), Gaps = 22/262 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PL+ Y  QR  G     +   D     D+        ++ F
Sbjct: 641 YAEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNDGDSLIGVDI--TDGSNEIMLF 698

Query: 593 SSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPF 636
           +  G V + K                   G+P+ R K    +    +  +G ++      
Sbjct: 699 TDAGKVVRFKEAEETTVVDENGNPVLDEEGNPEIRFKGVRPMGRTATGVRGIKMADDQRV 758

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693
                   +  ++  T++G  +R +L D+   +R+ +  + +   +     +        
Sbjct: 759 VSLIVPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDDN 818

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++I++ +  G  VR  ++ +    GRN+ GV  I     +QV+ +  +   +    + I 
Sbjct: 819 DEIMIISNRGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLID 877

Query: 754 YMKHMSAQRRLISGDTEEITSL 775
                +    +     +   S 
Sbjct: 878 IEDVETVDTVIDEVADDNPPSE 899


>gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 877

 Score =  900 bits (2325), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/881 (47%), Positives = 604/881 (68%), Gaps = 16/881 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I   ++TDEM+ SYL+YA++VI+ RA+PD RDGLKPVHRRI+F M + G +W+K++ 
Sbjct: 3   DKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+ L L++GQGNFGS+DGD  AA RYTE
Sbjct: 63  KSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A FL+ D+ K+TVDF+ NYD +  EPVVL A+YPN+LVNG  GIAVGMATNIP 
Sbjct: 123 TRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV++G +  IDN +I +  LM++I GPDFPTG +I+G+  I   Y  GRGSI IRG
Sbjct: 183 HNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIIIGQNDIIPGYEKGRGSIKIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E+ S D++ IV+  +PYQVNK  ++EKIAEL+R+K+I  I+DLRDES++ G R+ I
Sbjct: 243 EIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            +K+  S  +I+NQLY+++ LQ+ F  N +A+N  KPE   L   +K FV FRE+V+ +R
Sbjct: 303 TVKKNVSEAIIINQLYKFSPLQTSFGFNTLAINEKKPELLNLKQFIKIFVDFREKVLTKR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+DR H+L+GL I++ N+DEV+ IIR S +P  A+  L+++ W+    K  ID
Sbjct: 363 TLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKSK--ID 420

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                   + +     LS+ Q +AILELRL +LT +G ++I +EL  L   I +   IL+
Sbjct: 421 KDVLEVNELSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKKILN 480

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            +  L  +IK EL  +K +   PRRT++V  + +++ ED I  E ++VTV++ GY+KR P
Sbjct: 481 DKKELQNLIKTELAEIKKKFAVPRRTKLVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTP 540

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+  RAQ+RGGKG++G+V R+EDFV+ LF VST T VLFFSS G VY+ K W++P GS  
Sbjct: 541 LTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNT 600

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++GKAL NI  +    +I++I+P P D+S+W + +++F T +G +R+N + DF  I  +G
Sbjct: 601 SKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIRKNSILDFENIQANG 660

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           KIAMKL+  D+I+SV+   + +D++L T  G+ +R   S IR+F GR+S G++GI+L   
Sbjct: 661 KIAMKLEKDDKIVSVKIVKKNDDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNN 720

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VIS+ ++ H     +E   Y+K                  L+N       IS ++ +E
Sbjct: 721 DKVISLTVLNHVTTTSEETKAYIKRT------------RKDDLENTDDTNFEISTKKYEE 768

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           LKL+E+FILT++E G+GKR+SSY+FR S R G+GI     S+ N  G + A + V ++D 
Sbjct: 769 LKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISSERN--GNIAASYSVKNDDD 826

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           I+L+++KG +IR  V++IRI  R T+GV IF   K+E+VVS
Sbjct: 827 IMLITNKGQMIRCAVSDIRITGRNTQGVRIFKVEKNEKVVS 867



 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 111/297 (37%), Gaps = 23/297 (7%)

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
               ++    +    I+ + +  +    L  +  T+   +++     F    R+     K
Sbjct: 457 GHEEINSELQDLYKLIVKYKKILNDKKELQNLIKTELAEIKK----KFAVPRRT-----K 507

Query: 678 LDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV- 735
           L    E + VE    +E  I+  T  G   R P+++IR    R   G  GI   + D V 
Sbjct: 508 LVGAVENVDVEDVIQEEKVIVTVTNKGYIKRTPLTSIRAQK-RGGKGKTGIVTREEDFVS 566

Query: 736 ----IS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
               +S +  VL   +           +        G            +   +I     
Sbjct: 567 QLFPVSTLTPVLFFSSKGIVYRLKAWKIPEGSNTSKGKALANIFPIKADAQISSILPLPY 626

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +   K+ F++ V+  G  ++ S  DF     +GK   A  +    +   +V+V  V  N
Sbjct: 627 DQSTWKDNFLIFVTANGKIRKNSILDFENIQANGK--IAMKL---EKDDKIVSVKIVKKN 681

Query: 851 DQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D ++L +  G  +R+  ++IRI   R++KG+   +   +++V+S+  +       E 
Sbjct: 682 DDVMLNTYSGKSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEE 738



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 100/249 (40%), Gaps = 39/249 (15%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +++ ++ V+  G +++  +  +   +  GK    + +  +D +  + IV  +  V+  + 
Sbjct: 632 KDNFLIFVTANGKIRKNSILDFENIQANGKI--AMKLEKDDKIVSVKIVKKNDDVMLNTY 689

Query: 595 LGFVYKEKVWRLPIGS-PQARGKALINILS------------------------------ 623
            G   +    ++ I     ++G   IN+ +                              
Sbjct: 690 SGKSLRINASKIRIFKGRSSKGIKGINLKNNDKVISLTVLNHVTTTSEETKAYIKRTRKD 749

Query: 624 -LNQGERITTIMPFPEDESSW-NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
            L   +     +   + E       +++  T++G  +R+   +F +  R G+  + + S 
Sbjct: 750 DLENTDDTNFEISTKKYEELKLREEFILTITENGYGKRSSSYEFRESGRGGQGIINIISS 809

Query: 682 DEILSVET---CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +   ++        ++DI+L T  GQ +R  +S IR   GRN+ GVR   + K ++V+S 
Sbjct: 810 ERNGNIAASYSVKNDDDIMLITNKGQMIRCAVSDIR-ITGRNTQGVRIFKVEKNEKVVSS 868

Query: 739 AIVLHADAD 747
             +  + AD
Sbjct: 869 VCLTDSVAD 877


>gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 894

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/894 (42%), Positives = 545/894 (60%), Gaps = 77/894 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K    +S+ +EM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++  +WN+
Sbjct: 2   TQFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD + RMAQD+S+R +L++GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K AH LL DL K+TVDF PNYDGS  EP+V+  R PN+LVNG GGIAVGMATN
Sbjct: 122 YTEIRLAKIAHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD C+ ++ NP+  +D LM+II  PDFPT  +I G  G+K+ Y TGRG +V
Sbjct: 182 IPPHNLNEVVDACLHLLKNPEASIDELMDIIPAPDFPTAGIIYGIQGVKDGYRTGRGRVV 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   H E     + + I+V E+PYQVNK  + E++AELV EK+I  I+ ++DESD+ G 
Sbjct: 242 MRARCHFEDIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P+   L  +++ F+  R EV
Sbjct: 302 RLVIELKRGEVPEVVLNNLYKQTQLQDTFGINMVALVNGQPKLCNLKDLIEVFLNHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R HVL GLA+A+AN+D+ +RIIR SP P  A+ ELM R W++  ++
Sbjct: 362 VTRRTVFNLRKARERGHVLEGLAVALANIDDFIRIIRESPTPPVAKTELMNRPWDSKLVR 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                       + +G+DG   LSE Q + IL++RL RLTGL +D 
Sbjct: 422 EMLTRTRADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME 528
           I  E   +  EI++ LDIL+  +R+  II +EL  VK E        RR+ +     D+ 
Sbjct: 482 IVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGARRSLVEHSSFDLS 541

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I   DMVVT+SH GY+K  PL  YRAQ+RGG+G+     +++D+V  LF+ +TH  
Sbjct: 542 TEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDY 601

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP-EDESSWNNLY 647
           +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+IT ++    E  +   + Y
Sbjct: 602 ILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQY 661

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  +T  G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VR
Sbjct: 662 VFMSTSMGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVR 721

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GRN+ GVRG+ L +G  VI+M +                           
Sbjct: 722 FDENDVRPM-GRNARGVRGMMLDEGQSVIAMLVAED------------------------ 756

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                       ++Q +LT +E G+GKRT+  ++    R  KG+
Sbjct: 757 ----------------------------EQQSVLTATENGYGKRTNITEYTRHGRGTKGM 788

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
            A   S+ N  G +VA   V+  D+I+L++DKG L+R  V+EIR   RAT+GV 
Sbjct: 789 IAIQQSERN--GKVVAATLVHAEDEIMLITDKGVLVRTRVSEIREMGRATQGVT 840



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 14/229 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
             T  + ++  +  G     P+   R    R   G +  +  + D V  + +    D   
Sbjct: 545 LITPTDMVVTMSHSGYIKSQPLHEYRAQK-RGGRGKQATATKEDDWVDQLFVANTHDYIL 603

Query: 747 -----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                     +   +     R         +  L+    +   ++    +     +Q++ 
Sbjct: 604 CFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITVVLALTGEKRTFPADQYVF 663

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             +  G  K+T+  +F  SN    GI A D+ + +    L+     +    ++L SD G 
Sbjct: 664 MSTSMGTVKKTALDEF--SNPRKAGIIAVDLDEGDF---LIGAALTDGKHDVMLFSDGGK 718

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +R   N++R   R  +GV      + + V+++  + E E      +TE
Sbjct: 719 AVRFDENDVRPMGRNARGVRGMMLDEGQSVIAM-LVAEDEQQSVLTATE 766



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 76/181 (41%), Gaps = 16/181 (8%)

Query: 727 ISLA-----KGDQVIS-----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + L      + D++++     MA +        +       +  +   +  +  +     
Sbjct: 469 MRLQRLTGLEQDKIVAEYKDVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQTKIGA 528

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             S VE +  +   ++L      ++T+S  G+ K    +++R   R G+G +AT   + +
Sbjct: 529 RRSLVEHSSFDLSTEDLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDD 588

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS 893
            +  L   F  N +D I+  S++G L  + V E+   SR ++G   V +F   + E++  
Sbjct: 589 WVDQL---FVANTHDYILCFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKITV 645

Query: 894 V 894
           V
Sbjct: 646 V 646


>gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
 gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942]
          Length = 821

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/893 (42%), Positives = 548/893 (61%), Gaps = 86/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A VILN LY+ T+LQ+ F +N++AL   +P+   L   L  ++  ++ V+
Sbjct: 303 IVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLVHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  +
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKE 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  ++L II++EL  +K+  +  RRT IV      +EDED I RE++VVT++H GY+
Sbjct: 457 ILANEEKVLEIIREELTEIKERFNDKRRTEIVTAGLETIEDEDLIERENIVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+    +DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNGDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +     LY+ F TKHG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFD---EKLYLFFTTKHGISKRTTLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V        I++ TK G  +RFP S +R   GR + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMAVRLTDGTKQIIIGTKNGLLIRFPESDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDIVVGMEILED--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+E G+GKRT + D+R  +R GKG++   +++ N  G LV V    
Sbjct: 708 --------DSHVLIVTENGYGKRTPAEDYRTQSRGGKGLKTCKITENN--GRLVTVKATK 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             + +++++  G LIR+ + +I I  R T+GV +    + E V +V  + +++
Sbjct: 758 GEEDLMIITASGVLIRMDIEDISITGRVTQGVRLIRMGEQEHVATVALVEKND 810


>gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
 gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41]
          Length = 821

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/889 (42%), Positives = 561/889 (63%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+
Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+L +KD     RRT I   G+  +EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++++GE++T ++     +    + Y +F TK G  +R  +S F  I
Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFD---EDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     +  I++ T+ G  VRF    IR   GR + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M IV                                               
Sbjct: 693 LRDGDEVVGMEIVEPG-------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q IL V+EKG+GKRTS  D+R+ +R G G++   ++  N  G +VAV  V+
Sbjct: 709 ---------QEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVKTVD 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++ I+L++  G LIR+ VN+I +  R+T+GV +     DE V +V ++
Sbjct: 758 GSEDIMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKV 806



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               K +   R  I    +  +  +      G I     ++L   E  ++T++  G+ KR
Sbjct: 459 ADEAKIVDIIRTEILELKDRYSDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYIKR 518

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            ++  +R   R G+G++    ++ + +  L+     + +D I+  + KG + R    EI 
Sbjct: 519 LAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNT---STHDTILFFTSKGKVFRAKGYEIP 575

Query: 872 IASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
              R  KG   V + +  K E+V ++ R+   +  
Sbjct: 576 EYGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDED 610


>gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
 gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP]
 gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1]
          Length = 880

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae 10810]
          Length = 880

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 414/905 (45%), Positives = 579/905 (63%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D          + G      YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|167038685|ref|YP_001661670.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513]
 gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514]
 gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561]
 gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513]
          Length = 807

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +V
Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELEELMEKIKELKGI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  +   S +  YVV  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIGQGEKVTAVIPLKK---SQDIKYVVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHPG---------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+EKGFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 706 -------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 96/237 (40%), Gaps = 21/237 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++   I    K     +F +S       + +  +  + L      
Sbjct: 383 IALDHIDEVINIIRSSKTEAI---AKQNLMDKFGLSE------KQAQAIVDMRLGRLTGL 433

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +  +V   +  ++    +    +   + +    +    + ++  +    +++     E  
Sbjct: 434 ERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELD 493

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++  G+ KR     ++   R GKGI      + +    +  +F    
Sbjct: 494 LEDLVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF---VRDIFITTT 550

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +D+++  ++KG +  +   +I    R  KG   V +    + E+V +V  +++S+ +
Sbjct: 551 HDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPLKKSQDI 607


>gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
 gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1]
          Length = 884

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 103/572 (18%), Positives = 194/572 (33%), Gaps = 68/572 (11%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             +     I  ++   R  +V R  S  E         ++  +   V ++ + E IA + 
Sbjct: 342 PRLFNLKEIIESFVLHRREVVTR-RSIFELRKARERTHILEGLA--VARSNIDEMIAIIR 398

Query: 289 REKRIVDIADLRDESDRQGYRVVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
             K   + A          +  +I L    A  D +   L        L    + A+   
Sbjct: 399 NSKNREEAATAISSRSWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILEL 458

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +         L        E V++  + LL K  D  H+L       ++ + ++ +IR  
Sbjct: 459 R---------LHRLTGIAFEEVIKEYEELLVKIADLLHIL-------SSAERLMEVIREE 502

Query: 408 PNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY-----LS--EVQTRAIL 458
                A+   + +     AS   DL DLI      +      Y     L+  E Q R   
Sbjct: 503 LEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGK 562

Query: 459 ELRLARLTGLGRDDIRNELNSLGIE-------IKECLDILSSRSRLLGIIKQELLSVKDE 511
                ++      +     N+               L +        G   + ++++   
Sbjct: 563 GKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRPIVNILPL 622

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
            +  R T I+              +  VV  +  G VK++ L+ +   R  G     + +
Sbjct: 623 QENERITAILPV-------SAYEEDKFVVMATAGGIVKKIALTEFSRPRSNG--IIALNL 673

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP-----QARGKALINILSLNQ 626
           RDED +  + I      ++ FSS G V +     +          +    AL N +S ++
Sbjct: 674 RDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDE 733

Query: 627 GERITTIMP--------------FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                  +                           ++ AT++G  +R +LS++   +R+ 
Sbjct: 734 SAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNT 793

Query: 673 KIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           K  + +       ++++     + + I+L T  G  VR  +S +    GRN+ GVR I  
Sbjct: 794 KGVISIKVSERNGKVVAATQVEETDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRT 852

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           A  + V+S+  V  AD D DE     +  S +
Sbjct: 853 ADDEHVVSLERVCDADEDEDEDDSLEESNSKE 884


>gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus
           influenzae F3031]
 gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE]
 gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus
           influenzae F3031]
          Length = 882

 Score =  899 bits (2324), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII]
 gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866]
          Length = 880

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/905 (45%), Positives = 582/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + EEI+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEEISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
 gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1]
          Length = 821

 Score =  899 bits (2323), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/892 (42%), Positives = 562/892 (63%), Gaps = 86/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY TGRGSI+
Sbjct: 183 IPPHQLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I++ E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIDELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   +++ II+ E+L +K+  +  RRT I   G+  +EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++ +GE++T ++     +   ++ Y +F TK G  +R  +S F  I
Sbjct: 577 FGRTAKGLPIVNLLNIEKGEKVTAMIRVASFD---DDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     E  +++ T+ G  VRF    IR   GR + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGEKQVIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M IV                                               
Sbjct: 693 LRDGDEVVGMEIVEPG-------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q IL V+EKG+GKRTS  D+R+ +R G G++   ++  N  G +VAV  V+
Sbjct: 709 ---------QEILVVTEKGYGKRTSEEDYRLQSRGGVGLKTIQITDKN--GPMVAVKTVD 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            ++ ++L++  G LIR+ VN+I +  R+T+GV +     DE V +V ++ ++
Sbjct: 758 GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDDELVATVAKVEKA 809



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 6/162 (3%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D          K +   R  I    E     +      G I     ++L   E  ++T++
Sbjct: 452 DELKAILADEEKIVDIIRTEILELKERFNDTRRTEITSGGIEMIEDEDLIPVENSVVTLT 511

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G+ KR ++  +R   R G+G++    ++ + +  L+     + +D I+  + KG + R
Sbjct: 512 HNGYIKRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNT---STHDTILFFTSKGKVFR 568

Query: 865 VPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
               EI    R  KG   V + +  K E+V ++ R+   +  
Sbjct: 569 AKGYEIPEFGRTAKGLPIVNLLNIEKGEKVTAMIRVASFDDD 610


>gi|297543508|ref|YP_003675810.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 805

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/890 (44%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y
Sbjct: 2   SEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RYT
Sbjct: 62  KKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+R
Sbjct: 182 PHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +VV
Sbjct: 242 AKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV R
Sbjct: 301 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +           
Sbjct: 361 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   IL
Sbjct: 410 ---------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR+
Sbjct: 455 ADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRM 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P    
Sbjct: 515 PLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGR 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G A++N++ + QGE++T ++P  +   S +  YVV  TK G +++  + +F  I R+
Sbjct: 575 QAKGTAIVNLIQIGQGEKVTAVIPLKK---SQDIKYVVMCTKKGIIKKTSIEEFRSIKRN 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE+++ +    E +I++ T  G  +RF    IR   GR + GV  ISL +
Sbjct: 632 GIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M +V                                                  
Sbjct: 691 DDEVVEMDLVHPG----------------------------------------------- 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL V+EKGFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  D
Sbjct: 704 ------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPED 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++S  G LIR+ V+EI    R T+GV +      +RVVS  RI   E
Sbjct: 756 EFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 70/166 (42%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++    +    +   + +    +    + ++  +    +++     E   ++L   E  +
Sbjct: 443 LMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVV 502

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  G+ KR     ++   R GKGI      + +    +  +F    +D+++  ++KG
Sbjct: 503 VTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF---VRDIFITTTHDRLLFFTNKG 559

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            +  +   +I    R  KG   V +    + E+V +V  +++S+ +
Sbjct: 560 KVYSLRTIDIPETGRQAKGTAIVNLIQIGQGEKVTAVIPLKKSQDI 605


>gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
 gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus
           aegyptius ATCC 11116]
          Length = 880

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 411/905 (45%), Positives = 577/905 (63%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I+++
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIES 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNASDIKDLI----DLIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   +    +       D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + EEI+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEEISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9]
 gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9]
          Length = 805

 Score =  899 bits (2322), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/890 (44%), Positives = 555/890 (62%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y
Sbjct: 2   SEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RYT
Sbjct: 62  KKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A IDNP I +D LM+ I+GPDFPTG VILGR GIK  Y TGRG IV+R
Sbjct: 182 PHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVILGRDGIKETYETGRGKIVVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +IV+TEIPY V KA ++EKIAELVREK I  I+DLRDESDR G +VV
Sbjct: 242 AKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV R
Sbjct: 301 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVTR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +           
Sbjct: 361 RTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE   IL
Sbjct: 410 ---------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR+
Sbjct: 455 ADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVVVTMTHYGYIKRM 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P    
Sbjct: 515 PLDTYKAQKRGGKGILGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGR 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G A++N++ + QGE++T ++P  +   S +  YVV  TK G +++  + +F  I R+
Sbjct: 575 QAKGTAIVNLIQIAQGEKVTAVIPLKK---SQDIKYVVMCTKKGIIKKTSIEEFRSIKRN 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE+++ +    E +I++ T  G  +RF    IR   GR + GV  ISL +
Sbjct: 632 GIIAITLEENDELINTKLTNGEREIIIGTAKGYAIRFNEKDIRPM-GRVAKGVIAISLRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M +V                                                  
Sbjct: 691 DDEVVEMDLVHPG----------------------------------------------- 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   IL V+EKGFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  D
Sbjct: 704 ------SEILVVTEKGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPED 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +++S  G LIR+ V+EI    R T+GV +      +RVVS  RI   E
Sbjct: 756 EFMIISANGILIRMKVSEISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 805



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 71/166 (42%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++    +    +   + +    +    + ++  +    +++     E   ++L   E  +
Sbjct: 443 LMEKIKELKGILADERKVLEIIKKELLEIKDKYATPRKTNIVAKEEELDLEDLVQLEDVV 502

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  G+ KR     ++   R GKGI      + +    +  +F    +D+++  ++KG
Sbjct: 503 VTMTHYGYIKRMPLDTYKAQKRGGKGILGISTREDDF---VRDIFITTTHDRLLFFTNKG 559

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            +  +   +I    R  KG   V +   A+ E+V +V  +++S+ +
Sbjct: 560 KVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSQDI 605


>gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7]
 gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7]
 gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208]
 gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3]
          Length = 819

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/889 (43%), Positives = 547/889 (61%), Gaps = 86/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNTPQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 IRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R A+A VILN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ V+
Sbjct: 303 VVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++         
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  D
Sbjct: 414 -----------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L II++EL  +K+  +  RRT IV      +EDED I RE++V+T++H GYV
Sbjct: 457 ILANEERVLEIIREELNEIKERFNDERRTEIVTSGLETIEDEDLIERENIVITLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P    +     LY+ F TK G  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVEKGEWINAIIPVSTFD---EELYLFFTTKQGVSKRTALSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +  I++ TK G  +RFP   +R   GR + GV+GI+
Sbjct: 634 RNNGLIALGLREDDELMAVRLTDGKKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+                                               
Sbjct: 693 LTDDDVVVGMEILEE--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+E G+GKRT + ++R+ +R GKG++   ++  N  G LV V    
Sbjct: 708 --------DSHVLIVTENGYGKRTPASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATR 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + +++++  G LIR+ +N+I    R T+GV +   +  E V +V  +
Sbjct: 758 GEEDLMIITASGVLIRMDINDISTTGRVTQGVRLIRMSDQEHVATVALV 806


>gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
 gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599]
          Length = 844

 Score =  898 bits (2321), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/899 (41%), Positives = 543/899 (60%), Gaps = 85/899 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE      V I+ EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M  MG+  +K 
Sbjct: 3   EETARFPKVDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A + GEVM  YHPHG+++IY+A+ RMAQD+++R +L+EGQGNFGSVDGDP AA RY
Sbjct: 63  FRKSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R  K A  LL D+ K+TVDF PNYDG  +EPVVL +R+PN+L+NG  GIAVGMATNI
Sbjct: 123 TESRFSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +A+IDNPDI +  LM+II+GPDFPT   ILG +GI+ AY TGRGSI++
Sbjct: 183 PPHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGRGSIIM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +I+VTEIPYQVNKA ++EKIAELVREK+I  I DLRDESDR+G R+
Sbjct: 243 RAKTQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL+R     V+LN L+++T +QS F VNM+AL   +P    L  +L  ++  +  ++ 
Sbjct: 303 VMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQRVIIR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L +A  RAH+L GL IA+ ++DE++ +IR S   E AR  LM+           
Sbjct: 363 RRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLME----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS  Q +AIL++RL RLTGL R+ I NE   L ++I E   I
Sbjct: 412 ---------------NYSLSYEQAQAILDMRLQRLTGLEREKIENEYQELMVKIAELRAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  +++  II+ EL  +K++    RRT I      +ED D I  ED+V+T++H GY+KR
Sbjct: 457 LADEAKIYAIIRDELGEIKEKFGDERRTEITFDENHIEDADLIPEEDVVITLTHDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+S YR+Q+RGG+G  G+  +D+DFV  L+I ++H  ++FF+S G VY+ K + +P  S
Sbjct: 517 LPVSTYRSQKRGGRGVQGLGTKDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN++ + +GER++ ++P  E +      Y+ FATK G +++  L  +  I +
Sbjct: 577 RTAKGTPIINLIQIEKGERVSAVIPVKEFD---QEHYLFFATKKGIIKKTTLESYENIRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+ L   DE++ V     +  I++ T  G  VRF    +R   GRN+ GV+GI+L 
Sbjct: 634 GGLIAVNLREDDELIGVRLTDGQQQIIMGTHKGMSVRFNEGDVRTM-GRNATGVKGITL- 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                                                                +  +   
Sbjct: 692 ----------------------------------------------------DDDDDVID 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++      +L V+  G+GKRT   ++RI +R GKGI+  +V+  +  G +V +  V   
Sbjct: 700 MDVIKPNAEVLIVTANGYGKRTPVDEYRIQSRGGKGIKTHNVTDRS--GPVVGLKVVEPE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + +++++  G +IR  +  I +  R T+GV +   +++E+V SV +   +E  D  +  
Sbjct: 758 EDLMIITTSGIIIRTEMKGISVMGRYTQGVKLIRLSENEQVGSVAKCPPTEEEDMTDED 816


>gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 807

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  +   S +  Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKK---SEDIKYIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHPN---------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 706 -------SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 9/214 (4%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749
           E+ ++  T  G   R P+   +    R   G+ GIS  + D V  + I    D      +
Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKAQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           +   Y                         +    ++     +     ++I+  ++KG  
Sbjct: 560 KGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIKYIVMCTKKGII 619

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+TS  +FR   R+  GI A  + +      L+ V   N   +II+ + +G  IR    +
Sbjct: 620 KKTSIEEFRSIKRN--GIIAITLEE---SDELINVKLTNGEREIIIGTARGYAIRFNEKD 674

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R  KGV+  S  +D+ VV ++ +  +  +
Sbjct: 675 IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEI 708


>gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18]
 gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140]
 gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1]
 gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
 gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291]
 gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11]
 gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2]
          Length = 916

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905]
 gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905]
          Length = 821

 Score =  898 bits (2320), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/892 (42%), Positives = 563/892 (63%), Gaps = 86/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+E  G+  ++IT+E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 3   EQERSGVKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP+VL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ +NP I  + LMEII GPDFPTG +ILGR+GI+ AY +GRGSI+
Sbjct: 183 IPPHHLGETIDAVIALSENPAITTEELMEIIPGPDFPTGGLILGRSGIRRAYESGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+ +  +E I+V E+PYQVNKA ++EKIAELVR+K+I  I +LRDESDR+G R
Sbjct: 243 IRAKVEIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE+++ A+A+V+LN LY+ T++QS F +NM++L   +P+   L  +L  ++  ++ ++
Sbjct: 303 VVIEVRKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQPKVLGLKEMLYHYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++DE++ IIR S + E A+ +LM+R         
Sbjct: 363 RRRTEFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RL+GL R+ I  E   L + I E   
Sbjct: 414 -----------------FNLSERQAQAILDMRLVRLSGLEREKIEAEYQELQVLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+  ++++ II+ E+L +KD     RRT I   G+  +EDED I  E+ VVT++H GY+
Sbjct: 457 ILADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF+S G V++ K + +P 
Sbjct: 517 KRLAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L++++GE++T ++     +    + Y +F TK G  +R  +S F  I
Sbjct: 577 YGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFD---EDAYFIFTTKTGITKRTPVSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D+++SV     +  I++ T+ G  VRF    IR   GR + GVRGI 
Sbjct: 634 RTNGLIAISLREDDDLISVRLTDGDKQIIIGTRDGMLVRFQEDDIRSM-GRTAGGVRGIK 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M IV                                               
Sbjct: 693 LRDGDEVVGMEIVEPG-------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q IL V+EKG+GKRTS  D+R+ +R G G++   ++  N  G +VAV  V+
Sbjct: 709 ---------QEILVVTEKGYGKRTSEDDYRLQSRGGVGLKTMQITDKN--GPMVAVKTVD 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            ++ ++L++  G LIR+ VN+I +  R+T+GV +     +E V +V ++ ++
Sbjct: 758 GSEDLMLITINGMLIRMDVNDISLIGRSTQGVRLIRLGDEELVATVAKVEKA 809



 Score = 92.2 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 66/155 (42%), Gaps = 6/155 (3%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
               K +   R  I    +  + ++      G I     ++L   E  ++T++  G+ KR
Sbjct: 459 ADEAKIVDIIRTEILELKDRYSDIRRTEITSGGIEMIEDEDLIPVENSVVTLTHNGYIKR 518

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            ++  +R   R G+G++    ++ + +  L+     + +D I+  + KG + R    EI 
Sbjct: 519 LAANTYRSQKRGGRGVQGMGTNEDDFVEHLMNT---STHDTILFFTSKGKVFRAKGYEIP 575

Query: 872 IASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
              R  KG   V + +  K E+V ++ R+   +  
Sbjct: 576 EYGRTAKGLPIVNLLNIDKGEKVTAMIRVGSFDED 610


>gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A
 gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 916

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/915 (39%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE+IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+    A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWASSLVEEMLTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
 gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090]
 gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19]
 gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1]
 gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332]
 gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62]
          Length = 916

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIRG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
 gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200]
          Length = 807

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 397/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  +   S +  Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKK---SEDIKYIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFDEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHPN---------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 706 -------SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 9/214 (4%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749
           E+ ++  T  G   R P+   +    R   G+ GIS  + D V  + I    D      +
Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKAQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           +   Y                         +    ++     +     ++I+  ++KG  
Sbjct: 560 KGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIKYIVMCTKKGII 619

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+TS  +FR   R+  GI A  + +      L+ V   N   +II+ + +G  IR    +
Sbjct: 620 KKTSIEEFRSIKRN--GIIAITLEE---SDELINVKLTNGEREIIIGTARGYAIRFDEKD 674

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R  KGV+  S  +D+ VV ++ +  +  +
Sbjct: 675 IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEI 708


>gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1]
 gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1]
          Length = 896

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/909 (43%), Positives = 548/909 (60%), Gaps = 81/909 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   ELAKEIIPVSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +H LL DL K+TVDF PNYDG+   P VL AR P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMAKISHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DGC+AVIDN DI +D L++ I GPDFPTGA I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEIIDGCLAVIDNADITIDELIDHIPGPDFPTGAFINGRAGIIEAYKTGRGRIYM 242

Query: 251 RGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H E       Q IV TEIPYQ+NKA ++EKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARHHFEDMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG + DV++N ++  T LQS+F +NMVAL   +P+   +  IL+ FV  R EVV
Sbjct: 303 IVIELRRGENPDVVVNNIFTQTQLQSVFGINMVALVDGRPQLLNIKQILECFVKHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R H+L GLA+++AN+D V+ +IR SP    A+ +++  SW   D+  
Sbjct: 363 TRRTIFELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG  +LS  Q +AIL+LRL RLTGL  D +  E  +L 
Sbjct: 423 MLERAGADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L+ILS+  RL+ +I++EL  VK+     RRT I+    D+   D I    MVVT
Sbjct: 483 ELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLTIADLIDEAPMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY K  PL  Y+AQRRGG+G+S   M+DED +  L + S+H +++ FS+ G VY  
Sbjct: 543 ISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMP----------------FPEDESSWNN 645
           +V+ +P+ S  A+G+ ++N+L L +GE I+ ++P                  +D     +
Sbjct: 603 RVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEADSEADDDVSDDAIVEAS 662

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
            Y+  AT +G V++  +  F +   +G IA+ LD  DE++ V     ENDI+L +  G+ 
Sbjct: 663 SYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSVTNGENDIMLVSSSGKT 722

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  S +R   GR + GVRGI L +  +V+S+ +     A                   
Sbjct: 723 IRFKESDVRAM-GRTAAGVRGIRLGEDAKVVSLIVPQDGSA------------------- 762

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                             +L   E G+GKRT   DF +  R G+
Sbjct: 763 ----------------------------------VLMACENGYGKRTLVEDFPVYGRGGQ 788

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+    VS+ N  G +V    V++ D+IIL++D+GTL+R  V E+    R T+GV +   
Sbjct: 789 GVIGIQVSERN--GPVVGAAQVDETDEIILITDQGTLVRTRVTEVSCQGRNTQGVTLIRL 846

Query: 886 AKDERVVSV 894
             DE +V +
Sbjct: 847 TNDEHLVGI 855



 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 75/190 (39%), Gaps = 13/190 (6%)

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+++     ++    +    +     +    R    + +E       + +  +  +  
Sbjct: 470 EHDKLLGEYKTLIELIGELLNILSNPDRLMEVIREELQEVKETFGDARRTEILTSRQDLT 529

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L  +   ++T+S  G+ K     +++   R G+G  +  +   + I  L      + 
Sbjct: 530 IADLIDEAPMVVTISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHL---LVTSS 586

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS------VERIRES 900
           +D I+L S+ G +  + V EI +ASR+ KG   V +    + E + +      VE +   
Sbjct: 587 HDTIMLFSNFGKVYWLRVFEIPVASRSAKGRPIVNLLPLREGESISALLPLPVVEAVEAD 646

Query: 901 EIVDEAESTE 910
              D+  S +
Sbjct: 647 SEADDDVSDD 656



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 15/258 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D+ D+  +     +   +  G VK+  +  +   R  G     +   DE     +   +
Sbjct: 651 DDVSDDAIVEASSYIFMATANGTVKKTAMQHFARPRSTGLIALSLDETDELVGVSV--TN 708

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               ++  SS G   + K   +      A   A +  + L +  ++ +++         +
Sbjct: 709 GENDIMLVSSSGKTIRFKESDVRAMGRTA---AGVRGIRLGEDAKVVSLI------VPQD 759

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701
              V+ A ++G  +R  + DF    R G+  + +   +     +      + ++I+L T 
Sbjct: 760 GSAVLMACENGYGKRTLVEDFPVYGRGGQGVIGIQVSERNGPVVGAAQVDETDEIILITD 819

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  ++ +    GRN+ GV  I L   + ++ +  V+  D +  E           
Sbjct: 820 QGTLVRTRVTEV-SCQGRNTQGVTLIRLTNDEHLVGIERVVEDDEEDVEIDEVDDTTVVD 878

Query: 762 RRLISGDTEEITSLKNDS 779
           +    G         +  
Sbjct: 879 QAPNDGGESPDILDSDTE 896


>gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035]
          Length = 916

 Score =  897 bits (2319), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIRG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
 gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334]
          Length = 848

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +             
Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 436

Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 437 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 496

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 497 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 556

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 557 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 616

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    +    + +V  AT  G +++  L++F Q    GKIA+
Sbjct: 617 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 673

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     VI
Sbjct: 674 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 732

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 733 ALIVVKPKGN-------------------------------------------------- 742

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 743 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 797

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I    I +
Sbjct: 798 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 845


>gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
 gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331]
          Length = 848

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 17  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 77  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 256

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 257 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 317 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 376

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +             
Sbjct: 377 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPDDL 436

Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 437 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 496

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 497 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 556

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 557 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 616

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    +    + +V  AT  G +++  L++F Q    GKIA+
Sbjct: 617 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 673

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     VI
Sbjct: 674 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 732

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 733 ALIVVKPKGN-------------------------------------------------- 742

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 743 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 797

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I    I +
Sbjct: 798 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 845


>gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
 gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6]
          Length = 868

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 460/870 (52%), Positives = 613/870 (70%), Gaps = 15/870 (1%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RAIPDLRDGLKPVHRRIL+ M + G   +K Y K AR  G+VMGKYHPHG++AI
Sbjct: 1   MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDAL RMAQD+S+ L L++GQGNFGS+DGD PAA RYTE R+ K A F+L D+ K+TVDF
Sbjct: 61  YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG  QEP VL AR+PN+LVNG GGIAVGMATNIP HNLGEVVD  +A+ID+PD+  
Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           + L+E + GPDFPTG V+LGR+G + AY  GRGS++IR  + +E+   DR  IVV EIPY
Sbjct: 181 EQLIEYVPGPDFPTGGVMLGRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA+M+EKIAE VREKRI  ++ ++DESDR G RVV+ELKR A+ +V+LNQL+R++ +
Sbjct: 241 QVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELKRDATPEVVLNQLFRFSPM 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F  NM+ALNG +PE+ TL   L +F+ FRE+VV RRT YLL KAR+R+H+L GLA+A
Sbjct: 301 QTSFGCNMLALNGGRPEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGLAVA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           V+N+DEVV  IR S +   AR++LM R W ASDI   I LIDD ++ +  D T  LSE Q
Sbjct: 361 VSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLSETQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            RAILELRL RLT +G  ++ +EL  L  +IKE LDILSSR R++ II  EL  V+++  
Sbjct: 421 ARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVREQFA 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PRRT IV+   DMEDED I REDMVVTV+  GY+KR PL+ +RAQ+RGGKG SG+  ++
Sbjct: 481 VPRRTEIVDWSGDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRGGKGLSGMQTKE 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           ED VT+LF+ +THT +LFF++ G VYK K WRLP      +GKA++NIL +  G  I  I
Sbjct: 541 EDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAIVNILPIPTGVSIAAI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETC 690
           MP    ++ W +L +VFAT  G VRRN+LSDF  +  +GKIAMK +      ++++   C
Sbjct: 601 MPVDRPDNEWADLQIVFATSAGTVRRNRLSDFTNVKSNGKIAMKFEEEHAETKLINARIC 660

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++E+D++L T  G+ +RFP + +RVF  RNSVGVRGI L  G +V+SM++V H DA+  E
Sbjct: 661 SEEDDVMLVTNTGRAIRFPTTEVRVFNSRNSVGVRGIKLGDGAEVVSMSVVRHFDAEPWE 720

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R  ++K    +         +++  +     EG +SE+R QE+      ++T+++ G G 
Sbjct: 721 RSAFIKRFRGELG------NDVSDEETSEENEGALSEDRYQEMLAANDLLVTINKAGAGN 774

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            TS++D+R+S R G+G+ A         G +VA FPV   DQI+L + KG  IRVPV+ I
Sbjct: 775 LTSAHDYRVSGRGGQGVGAMK------GGEIVATFPVTLEDQIMLATSKGQSIRVPVDGI 828

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900
              SR+  GV +F+T K E VVSV  I E+
Sbjct: 829 SFRSRSAGGVRVFNTGKGEEVVSVAWIAEN 858


>gi|167036442|ref|YP_001664020.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1]
 gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 807

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/891 (44%), Positives = 559/891 (62%), Gaps = 86/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE++ +  V I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 3   EEKEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R  LI+G GNFGSVDGDPPAA RY
Sbjct: 63  YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG IV+
Sbjct: 183 PPHNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IV+TEIPY V KA ++EKIAELVR+K I  I+DLRDESDR G ++
Sbjct: 243 RAKAEIEEH-HGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV 
Sbjct: 302 VIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA +RAH+L GL IA+ ++DEV+ IIR S     A++ LM +          
Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AI+++RL RLTGL R  + +EL  L  +IKE  +I
Sbjct: 412 ----------------FGLSEKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   ++L IIK+ELL +KD+  TPR+T IV    +++ ED +  ED+VVT++H GY+KR
Sbjct: 456 LADERKVLEIIKKELLEIKDKYATPRKTSIVAKEEELDLEDLVQLEDVVVTMTHYGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL  Y+AQ+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P   
Sbjct: 516 MPLDTYKAQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ + QGE++T ++P  +   S +  Y+V  TK G +++  + +F  I R
Sbjct: 576 RQAKGTAIVNLIQIAQGEKVTAVIPLKK---SEDIKYIVMCTKKGIIKKTSIEEFRSIKR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE+++V+    E +I++ T  G  +RF    IR   GR + GV  ISL 
Sbjct: 633 NGIIAITLEESDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPM-GRVAKGVIAISLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+ M +V                                                 
Sbjct: 692 EDDEVVEMDLVHPN---------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E GFGKRT   ++R+  R+GKGI A  +S+  + G LV++  VN  
Sbjct: 706 -------SEILVVTENGFGKRTDLEEYRLQTRAGKGIIAIRLSE--KTGKLVSIRSVNPE 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D+ +++S  G LIR+ V++I    R T+GV +      +RVVS  RI   E
Sbjct: 757 DEFMIISANGILIRMKVSDISKMHRDTRGVTLMKLDDGDRVVSTARIENEE 807



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 9/214 (4%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749
           E+ ++  T  G   R P+   +    R   G+ GIS  + D V  + I    D      +
Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKAQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           +   Y                         +    ++     +     ++I+  ++KG  
Sbjct: 560 KGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGEKVTAVIPLKKSEDIKYIVMCTKKGII 619

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+TS  +FR   R+  GI A  + +      L+ V   N   +II+ + +G  IR    +
Sbjct: 620 KKTSIEEFRSIKRN--GIIAITLEE---SDELINVKLTNGEREIIIGTARGYAIRFNEKD 674

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R  KGV+  S  +D+ VV ++ +  +  +
Sbjct: 675 IRPMGRVAKGVIAISLREDDEVVEMDLVHPNSEI 708


>gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20]
 gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
 gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A
 gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20]
 gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW]
          Length = 880

 Score =  897 bits (2318), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/905 (45%), Positives = 578/905 (63%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A ID  +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSR 413

Query: 421 SWNA-SDIKDLIDLIDDSSYTIGSDG----TMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D          + G      YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
 gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076]
          Length = 824

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/896 (41%), Positives = 540/896 (60%), Gaps = 86/896 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+  N+   K 
Sbjct: 10  NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I+G+VMGKYHPHG++AIYD+L RMAQ +++R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 70  AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL+D+ K+TVDF+PNYD +  EP VL  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+++  + +I +P  +L  +ME ++GPDFPTG  ILGR GI +A+  GRG + +R  +
Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFILGRQGILDAFIRGRGQLKLRAKA 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK   DREQI+VTEIPYQVNK+ ++E  + LV EK++  I D+RDESDR G R+V EL
Sbjct: 250 AIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFEL 309

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG  A+VILN LY++T LQ  F + M+++   +P    L+ ++K F+  R EVV RRT+
Sbjct: 310 KRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQPRELGLVDMIKHFIDHRIEVVRRRTE 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KARDR H+L+G   A+ +LDEV+R+IR S +P+ AR  L+                
Sbjct: 370 YELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLIT--------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   S+ Q +AI+EL+L RLTG+ R  I +EL  +   I E ++IL S 
Sbjct: 415 -----------TFQFSDKQAQAIIELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSD 463

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L  +I +EL  V+      RRT+I+E   ++  ED +  ED+ +TV+  GY+KR  + 
Sbjct: 464 KVLRDLIIKELKEVQKNYGDERRTQIIEDTGEIRLEDLVAVEDVAITVTRGGYLKRTSVD 523

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGGKGR G+  R EDFV  L + STH+ +L F++ G VY  K + +P  +   +
Sbjct: 524 TYRRQTRGGKGRIGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTIGK 583

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK L N+++L   E     +   +      N Y+V  TKHG +++++L++F      G I
Sbjct: 584 GKHLTNLINLQGDEEAKAFLSVKDFV---ANQYIVMVTKHGVIKKSELTEFDNPLSRGII 640

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++  +    +N I L +  GQ +RF    +R   GR + GVR +SLA GD 
Sbjct: 641 AVSLDEGDELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAM-GRQARGVRAMSLADGDY 699

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ M +V                                                     
Sbjct: 700 LVGMEVVEKDG------------------------------------------------- 710

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL+++E G+GKRT   D+R+++R GKG+     +  N+ G +V +  V ++ +++
Sbjct: 711 ----LILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTT--NKTGRVVGILSVKEDSELM 764

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAEST 909
           +VS  G +IR+  + IR A R+T+GV + +   D++V +   I ES++V D+ + T
Sbjct: 765 IVSQNGKMIRIESSTIRQAGRSTQGVRLVNLEPDDKVAAASVIPESDVVPDDGQET 820


>gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
 gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B]
          Length = 865

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 399/910 (43%), Positives = 553/910 (60%), Gaps = 71/910 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +  + +  V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MADT----PTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQD+SLR  L++GQGNFGSV
Sbjct: 57  NELNNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG  
Sbjct: 117 DGDSAAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+ EV+ GC+A +DN DI +D LM+ I GPDFPTGA+I GR GI  A
Sbjct: 177 GIAVGMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAIINGRAGIVQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +   S  ++ I+V EIPYQ+NKA ++E+IAELV+EK+I  I +LR
Sbjct: 237 YRTGRGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G RVVIEL+RG   DV+LN LY  T+LQS+  +NMVAL   +P+   L  ++ A
Sbjct: 297 DESDKDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQPKVLNLKEMIAA 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT YLL KAR+R HVL GLA+A+AN+DEV+ +I+ SP    AR  L+  
Sbjct: 357 FVRHRREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDA 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +W   D+  +++    ++             +G  +LS  Q +AIL+LRL RLTGL  + 
Sbjct: 417 AWAPGDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEK 476

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E      EI + LDIL    RL  +I++EL     E    R T I +   D+  ED 
Sbjct: 477 LLQEYADKLTEIADYLDILEDSERLKRVIREELEETVAEFGDERMTEITDSAHDLTVEDL 536

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  ED VVT+SH GY K  PL+ Y+AQRRGG GRS   ++DEDFV  L I STH+++L F
Sbjct: 537 ITEEDRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHSTILCF 596

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+LG VY  +V+ +P+ S  +RG+ ++N+L L+ GER+T+I+P    E      Y+  AT
Sbjct: 597 SNLGKVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYE---AGSYIFMAT 653

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++ +++ F +    G  A++L+  D ++         D++L +  G+ VRF  +A
Sbjct: 654 AKGTVKKTEMTQFARQRSVGLRAIELEEGDHLVGTAVTDGSCDVMLFSSEGKAVRFNEAA 713

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI L     +IS+ I                                
Sbjct: 714 VRPM-GRTAKGVRGIRLGGDYSLISLII-------------------------------- 740

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                  ++  ILTVSE G+GKR+ + DF +  R   G+ A   
Sbjct: 741 ---------------------PKQQGRILTVSENGYGKRSETADFPVRGRGTMGVIAMST 779

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S  N  GALV    V D D+I+L+S++GT +R  ++EI +  R T+GV +  T  +E +V
Sbjct: 780 SDRN--GALVGAEQVWDGDEIMLISNQGTAVRTRIDEISLQGRNTQGVRVIRTRDEESLV 837

Query: 893 SVERIRESEI 902
           S+ RI E + 
Sbjct: 838 SISRIAEDDD 847



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 15/229 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+  ++ +  QR  G     + + + D +    +      V+ FSS G 
Sbjct: 648 YIFMATAKGTVKKTEMTQFARQRSVG--LRAIELEEGDHLVGTAVTDGSCDVMLFSSEGK 705

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      A+G   I         R+                 ++  +++G  
Sbjct: 706 AVRFNEAAVRPMGRTAKGVRGI---------RLGGDYSLISLIIPKQQGRILTVSENGYG 756

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R++ +DF    R     + + + D     +  E     ++I+L +  G  VR  I  I 
Sbjct: 757 KRSETADFPVRGRGTMGVIAMSTSDRNGALVGAEQVWDGDEIMLISNQGTAVRTRIDEI- 815

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
              GRN+ GVR I     + ++S++ +   D    +             
Sbjct: 816 SLQGRNTQGVRVIRTRDEESLVSISRIAEDDDATGDAAPVSAPPDEDTE 864


>gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 821

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/890 (43%), Positives = 553/890 (62%), Gaps = 86/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+    +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +
Sbjct: 2   NEQNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA 
Sbjct: 62  KAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI
Sbjct: 182 NIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G 
Sbjct: 242 TIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V
Sbjct: 302 RIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++        
Sbjct: 362 IRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  
Sbjct: 414 ------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYLSLVKLIAELK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547
           DIL++  ++L II++EL  +K+  +  RRT IV      +EDED I RE++VVT++H GY
Sbjct: 456 DILANEYKVLEIIREELTEIKERFNDERRTEIVTAGLETIEDEDLIERENIVVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P
Sbjct: 516 IKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L + +GE I  I+P  E       LY+ F TKHG  +R  LS F  
Sbjct: 576 EYGRTAKGIPIINLLEVEKGEWINAIIPVTEFN---AELYLFFTTKHGVSKRTSLSQFAN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE++ V        +++ TK G  +RFP + +R   GR + GV+GI
Sbjct: 633 IRNNGLIALSLREDDELMGVRLTDGTKQMIIGTKNGLLIRFPETDVREM-GRTAAGVKGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V+ M I+                                              
Sbjct: 692 TLTDDDVVVGMEILEE-------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+EKG+GKRT + ++R  +R GKG++   +++ N  G LV V   
Sbjct: 708 ---------ESHVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENN--GQLVTVKAT 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + +++++  G LIR+ +N+I I  R T+GV +   A++E V +V  +
Sbjct: 757 KGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806


>gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
 gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493]
 gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154]
          Length = 850

 Score =  897 bits (2317), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +             
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    +    + +V  AT  G +++  L++F Q    GKIA+
Sbjct: 619 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     VI
Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I    I +
Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 847


>gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 850

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/888 (42%), Positives = 547/888 (61%), Gaps = 67/888 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV  E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +             
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    +    + +V  AT  G +++  L++F Q    GKIA+
Sbjct: 619 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     VI
Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I    I +
Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 847


>gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
 gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212]
          Length = 850

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/888 (43%), Positives = 548/888 (61%), Gaps = 67/888 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK   K ARI G+V+GK
Sbjct: 19  LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR LLI+GQGNFGSVDGD PAA RYTE RL + AH L+ 
Sbjct: 79  YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP HNL E+++  +A
Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +I+NPD++++ LM  I GPDFPT  +I GR GI  AY TGRG I +R  + IE T   R 
Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGIINGRNGIVQAYKTGRGRIYVRAKTEIETTKSGRS 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IVV E+PYQVNKA +LEKI ELVREKRI  I+ LRDESD++G R+VIE+ RG +A+++L
Sbjct: 259 LIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIVL 318

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ++F +NMVAL+  +P    L  +L AF+  R EVV RRT + L KAR+RA
Sbjct: 319 NNLYAQTQLQTVFGINMVALDNGQPRVLNLKQLLSAFLQHRREVVTRRTLFELRKARERA 378

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS- 443
           H+L GL +A+AN+DEV+ +I+ +  P  A+  L+ ++W    + D +             
Sbjct: 379 HILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPDDL 438

Query: 444 -------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                      YLS  Q +AIL+LRL RLTGL  D IR E  ++  +I+E + I+S   +
Sbjct: 439 AAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDPDK 498

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L  +I++EL++VK++    RRT I++   D+  ED I  E  VVT+SH GY+K   LS Y
Sbjct: 499 LHEVIREELIAVKEQFGDERRTVIIDDHSDLTHEDLIPEEHRVVTLSHEGYIKSQSLSSY 558

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +AQ RGG+G+    ++++DFV ++ + ++H ++L FS+ G VY  KV+++P GS  ARG+
Sbjct: 559 QAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQVPQGSRIARGR 618

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            +IN+L L + E+I+ I+P    +    + +V  AT  G +++  L++F Q    GKIA+
Sbjct: 619 PIINLLPLVKDEQISAILPIRAYD---GSHFVFMATAQGAIKKVSLAEFSQPRTKGKIAL 675

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L+  D ++ V+    + +I+L T  G+ +RF    +R   GR++ GVRGI L     VI
Sbjct: 676 ALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREM-GRSARGVRGIKLKAKQNVI 734

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           ++ +V                                                       
Sbjct: 735 ALIVVKPKGN-------------------------------------------------- 744

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              ILT +  G+G+RT+  D+R + R G+G+ A  ++  N  G +V+   V D+D ++L+
Sbjct: 745 ---ILTATVHGYGQRTALDDYRSTGRGGQGVMAIRINSRN--GKVVSAAQVFDDDDVLLI 799

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           SDKGTL+R  VNEI    R T+GV +   ++DE +V +E I    I +
Sbjct: 800 SDKGTLVRTRVNEISQMGRNTQGVRLIQLSQDELLVGMEAISAELIEE 847


>gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
 gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18]
          Length = 916

 Score =  896 bits (2316), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
 gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646]
          Length = 809

 Score =  896 bits (2315), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/892 (43%), Positives = 549/892 (61%), Gaps = 85/892 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    +  V+I DEM+ SY+ YA++VI+GRA+PD+RDGLKP+HRRIL+ M ++ +  ++ 
Sbjct: 3   ELGGKVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A I G+VMGKYHPHG+AAIYDA+ R+AQD+S+R  LI+G GNFGS+DGDPPAA RY
Sbjct: 63  HRKSATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG V +I+NPD+    LM  I+GPDFPTG +ILGR GI+  Y TGRGSI++
Sbjct: 183 PPHNLSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIILGREGIREMYTTGRGSIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G +++IVVTEIPY VNKA ++EKIAELVR+K +  I+DLRDESDR G R+
Sbjct: 243 RAKATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A VILNQLY++T +Q  F   M+AL   KP+  TL  ++  ++  ++EVVV
Sbjct: 303 VIELKRDANAHVILNQLYKHTQMQVTFGAIMLALVENKPQVLTLREMIYHYLRHQQEVVV 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L +A +R H+L GL IA+ +LDEV+ +IR S +  TAR  LM+           
Sbjct: 363 RRTKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMK----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q + IL++RL RLT L R  I +E   L  +I     +
Sbjct: 412 ---------------NFGLTEKQAQVILDMRLQRLTALERQKIEDEYRELLEKIDYYKRV 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L     +  IIK+ELL +K+     RRTRIV  + D +++D I  ED+V+T++++GYVKR
Sbjct: 457 LGDEKLVFAIIKEELLKIKERFGDERRTRIVAEVKDFDEQDLIPEEDVVITMTYMGYVKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS YR+Q+RGGKG +G+  R+EDFV  + + +TH  VLFF++ G VY+ K   +P   
Sbjct: 517 MPLSSYRSQKRGGKGVTGITTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G A++N+L L   E++  ++P  +        Y+V  TK G V++  LS++    +
Sbjct: 577 RTAKGTAIVNLLPLKPQEKVNAVIPIKDFG---EASYLVMVTKRGLVKKTLLSEYESSRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L S DE++ V+   ++++++L T  G  +RF +  +    GR + GV+ I+L 
Sbjct: 634 TGIIAITLTSGDELIGVKLVGKKDELILGTSHGMSIRFSVEDVTP-TGRTARGVKAITLG 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V SM +                                                  
Sbjct: 693 EGDEVASMDVTSVGSD-------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKGFGKRT   ++RI  R G+GI    V+  +  G LV +  V + 
Sbjct: 709 ---------VLVITEKGFGKRTPLDEYRIQTRGGRGIITQRVT--DTTGRLVGLRVVAEG 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D IIL +  G +IR+ V+ I   SR T+GV +    + ++V +V  IRESE 
Sbjct: 758 DDIILCTASGMMIRLEVSGISSMSRNTRGVTLMKLEEGDQVSAVAVIRESED 809


>gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 912

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/922 (39%), Positives = 544/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G               +          + +  +    +       R     
Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E       +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
 gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881]
          Length = 935

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/934 (41%), Positives = 550/934 (58%), Gaps = 106/934 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   EVTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF  NYDG+ + P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDGC+A+ID+  +  D LME I+GPDFPT  +I GR GI  AY TGRG + +R  +
Sbjct: 187 LGEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGIINGRAGIVQAYRTGRGRVYMRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      +E I+VTEIPYQVNKA ++EKIAELV++K+I  I +LRDESD++G RVVIE
Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG +A+V+LN LY+ T ++S+F +N VAL   +P+   L  +L AF+  R EVV RRT
Sbjct: 307 LRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQPKILNLRELLDAFIRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR++AH+L GLA+A++N+D V+ +I+ SP+   A+ +L+ + W   D+  +++ 
Sbjct: 367 VFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLER 426

Query: 434 IDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               +              DG  +LS  Q +AIL+LRL +LTGL R+ + N+   L  +I
Sbjct: 427 AGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL +  RL+ +I++EL +V++E    RR+ IV    D   ED I  E +VVT+S+
Sbjct: 487 AELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVVVTLSN 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  P+  YRAQ+RGG+G+S   ++DED+V  L +  TH ++L F+  G V+  + +
Sbjct: 547 GGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDAGKVFWLRTF 606

Query: 605 RLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNN------------------ 645
            LP G   +RGK ++N+L  L   ERIT I+    +                        
Sbjct: 607 ELPQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEEIVDADDVIDAV 666

Query: 646 ---------------------LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  AT  G V+R  L++F +   SG IA+KL   + +
Sbjct: 667 DDEADSEVEGDVETVAETVPGPFIFMATSSGIVKRTALANFARPRSSGLIAVKLQEGEHL 726

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           ++V       DI+L  + G+ VRF  S +RV + R + GVRGI LA+G  +IS+ +    
Sbjct: 727 VNVAITQGHEDIMLVARNGKAVRFHQSKVRVMS-RLARGVRGIKLAEGVDLISLIV---- 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                                              +   ILT S
Sbjct: 782 -------------------------------------------------PEENGQILTAS 792

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E G+GKRT   D+    R G+G+ A  +++ N  G LV    V   + I+L+S++GTL+R
Sbjct: 793 EHGYGKRTPLTDYPTKGRGGQGVIAMVINERN--GELVGATQVFGEEDIMLISNQGTLVR 850

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             VN++  + R T+GV +   A  E +  +  I 
Sbjct: 851 TGVNQVSTSGRNTQGVRLIRLADGEALCGLATIP 884



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 97/263 (36%), Gaps = 21/263 (7%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
               VV  +  G  +   +  +    R   GK A +L   D +  +      + +LL T 
Sbjct: 537 EETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTD 596

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK---GDQVISMAIVLHADADYDERICYMKHM 758
            G+        +    GR S G   ++L      ++ I+  + L A+    ++    +  
Sbjct: 597 AGKVFWLRTFEL-PQGGRASRGKPIVNLLPALGNEERITAILRLDAEMVRQQKAGGEEEE 655

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF- 817
                 +    ++    + +  VE                FI   +  G  KRT+  +F 
Sbjct: 656 IVDADDVIDAVDDEADSEVEGDVETVAETV-------PGPFIFMATSSGIVKRTALANFA 708

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R  +    G+ A  + +      LV V     ++ I+LV+  G  +R   +++R+ SR  
Sbjct: 709 RPRS---SGLIAVKLQEGE---HLVNVAITQGHEDIMLVARNGKAVRFHQSKVRVMSRLA 762

Query: 878 KGVVIFSTAKDERVVSVERIRES 900
           +GV     A+   ++S+  + E 
Sbjct: 763 RGVRGIKLAEGVDLISL-IVPEE 784



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VKR  L+ +   R  G     V +++ + + ++ I   H  ++  +  G
Sbjct: 688 PFIFMATSSGIVKRTALANFARPRSSG--LIAVKLQEGEHLVNVAITQGHEDIMLVARNG 745

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +    ++ + S  ARG   +  + L +G  + +++          N  ++ A++HG 
Sbjct: 746 KAVRFHQSKVRVMSRLARG---VRGIKLAEGVDLISLI------VPEENGQILTASEHGY 796

Query: 657 VRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+D+    R   G IAM ++    E++       E DI+L +  G  VR  ++ +
Sbjct: 797 GKRTPLTDYPTKGRGGQGVIAMVINERNGELVGATQVFGEEDIMLISNQGTLVRTGVNQV 856

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
              +GRN+ GVR I LA G+ +  +A +   +   +E     + +  +    + +++   
Sbjct: 857 -STSGRNTQGVRLIRLADGEALCGLATIPELEGVEEEEGEDGEVIEGEASPQAPESDASD 915

Query: 774 SLKN 777
             + 
Sbjct: 916 DAEE 919



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+  + +   + +    R       E  + +  S +  +  +   ++L  +E  +
Sbjct: 482 LLEQIAELLKILGNPERLMEVIREELQAVREEYADERRSEIVASRQDFSMEDLIAEETVV 541

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S  G+ K      +R   R G+G  A  +   + +  L        +D ++L +D G
Sbjct: 542 VTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHL---LVAGTHDTLLLFTDAG 598

Query: 861 TLIRVPVNEIRIASRATKGVVIFS----TAKDERVVSVERIRES 900
            +  +   E+    RA++G  I +       +ER+ ++ R+   
Sbjct: 599 KVFWLRTFELPQGGRASRGKPIVNLLPALGNEERITAILRLDAE 642


>gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis]
 gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763
           +S+  V   +++  +          +  
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915


>gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
 gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681]
          Length = 854

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/887 (43%), Positives = 551/887 (62%), Gaps = 86/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I +  I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   DQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L DL K+TVDF PNYDG   EPVVL ARYPN+LVNG GGIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I+NPDI    LM+ I+GPDFPT   ILGR+GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+   ++ +I+V E+PYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEIG-NKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN L+++T++QS F +NM+A+   +P+   L  +L  ++  + EV+
Sbjct: 302 VVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYHYLKHQVEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+  Q++AIL++RL RLTGL R+ I NE N L  +I E  +
Sbjct: 413 -----------------FSLTLEQSQAILDMRLQRLTGLEREKIENEYNELIQKIAEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +K+     RRT I  G   + DED I RED+++TV+H GY+K
Sbjct: 456 ILANEHLVLNIISEELNELKERFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +DEDFV  LFI ++H  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P  E      + Y+ FAT+HG +++  L D+  I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPIEEFV---EDSYLFFATQHGIIKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + ++++ T  G  +RFP S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGINL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D VI M IV  +                                             
Sbjct: 692 DESDAVIGMDIVDTSLD------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL V+ KG+GKRT   D+RI +R GKGI+  +V+  N  G +V +  V  
Sbjct: 709 ----------ILIVTAKGYGKRTPVVDYRIQSRGGKGIKTINVTDKN--GPVVGLKVVKT 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            + +++++  GTLIR  + EI    R T+GV + +   D+ V +V R
Sbjct: 757 EEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVCR 803


>gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846]
          Length = 882

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 415/905 (45%), Positives = 580/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRAGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
 gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA]
          Length = 882

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 416/905 (45%), Positives = 581/905 (64%), Gaps = 43/905 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S+++G R+ I++KR A  +V+LN LY  T +Q  F +NMVAL+  +P  F L  I++A
Sbjct: 294 DLSNKEGIRIEIDIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEA 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RR+ + L KAR+R H+L GLA+A +N+DE++ IIR S N E A   +  R
Sbjct: 354 FVLHRREVVTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSR 413

Query: 421 SWNA-SDIKDLID---LIDDSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRN 475
           SW   SDI +L+D     D+    +G  G   YLS  Q  AILELRL RLTG+  +++  
Sbjct: 414 SWTLHSDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIK 473

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L ++I + L ILSS  RL+ +I++EL  VK +    R T I     D++ ED I +
Sbjct: 474 EYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQ 533

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+  L + +TH ++L FSS 
Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y  KV++LP  S  ARG+ ++NIL L + ERIT I+P    E    + +VV AT  G
Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYE---EDKFVVMATAGG 650

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L++F +   +G IA+ L   DE++ V+     N+I+L +  G+ VRF  +A+R 
Sbjct: 651 IVKKIALTEFSRPRSNGIIALNLRDEDELIGVDITNSSNEIMLFSSQGRVVRFAENAVRA 710

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVRGI LA                                   + + E+I+  
Sbjct: 711 M-GRLATGVRGIKLA-------------------------LTNDISDDESAVEIEDISDD 744

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
             ++S++ NI +     +   E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ 
Sbjct: 745 NTEASLDLNIDKVVSLVVPKGEGEILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSER 804

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE VVS+E
Sbjct: 805 N--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLE 862

Query: 896 RIRES 900
           R+ ++
Sbjct: 863 RVCDA 867


>gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58]
 gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14]
 gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710]
 gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568]
 gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304]
 gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399]
 gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385]
 gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76]
 gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196]
          Length = 916

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 815

 Score =  896 bits (2314), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/894 (40%), Positives = 538/894 (60%), Gaps = 81/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
                 I  + I DE++NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   NFTHGKIMPMPIHDEVKNSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ GEV+GKYHPHG+ A+YDA+ R+AQ++S R  L++G GNFGSVDGD  AA R
Sbjct: 62  PHKKSARLVGEVLGKYHPHGDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L ++ K+T+DFRPN+D + +EP VL AR+PN+L+NG  GIAVGMATN
Sbjct: 122 YTEARMSKIATEMLSEIHKETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVVD  V +IDNP+ +   +M+ I GPDFPTG +ILGR GI++AY TGRG I 
Sbjct: 182 IPPHNLREVVDALVHMIDNPECEDTEIMQHITGPDFPTGGLILGREGIRSAYRTGRGIIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE+    + +IVVTE+PYQVNKA  +EKIA+LVREK++  I DLRDESDR G R
Sbjct: 242 IRAKTQIERMENGKSRIVVTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR  +A V+LNQ++++T LQ  F + M+AL   KP+   L  +L  ++  +++V+
Sbjct: 302 IVIELKRETNAQVLLNQMFKFTQLQQTFGIIMLALVNNKPQVLNLREMLGHYLEHQKDVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA +RAH+L GL IA+ NLD V+++IR S N E AR  LM+          
Sbjct: 362 TRRTRFDLRKAEERAHILEGLRIALKNLDAVIKLIRASKNTEEARTGLME---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q +AIL++RL +LTGL R  + +E   L  +I    +
Sbjct: 412 ----------------NFGLTQIQAQAILDMRLQKLTGLERQKLEDEYLELIQKISYLKE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +  IIK E+  ++ +    RRT IV    D   ED I  EDMVVT++H GY+K
Sbjct: 456 ILANERLVYQIIKDEMGEIRKKYGDDRRTAIVIDEDDFAVEDLIAEEDMVVTLTHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR Q+RGG+G +G+  + +DFV  +F+ STH  +  F++ G +Y++KV+ +P  
Sbjct: 516 RLPVTTYRVQKRGGRGITGMSTKGDDFVEHVFVASTHDYLCCFTNRGKMYRKKVFEIPES 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               RG A++N+L++  GE +T ++P  +        ++   T+ G V++  L +FI   
Sbjct: 576 GRTTRGVAIVNLLAVEPGEYVTAVIPVKDFN---AGQFMFMCTRQGYVKKTPLEEFINAR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   DE++ V     + ++ L T  G  +RF    +R   GR++ GVRGISL
Sbjct: 633 KGGLIALSLAENDELIDVRLTNGKYEVALVTYHGLSIRFAEENVRSM-GRSARGVRGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+V+S+ ++                                                
Sbjct: 692 GPGDKVMSLEVLPPE--------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +E  +L V+EKGFGKRT   ++R   R GKGI    + + N  G ++    V  
Sbjct: 707 ----MEQETEMLVVTEKGFGKRTPFSEYRAQTRGGKGIYTIRILEKN--GPVMGAKMVRP 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            D++++++ +G +IR    +I I  R T+GV +    + +RVVS+ R+   E  
Sbjct: 761 GDEVMMITARGVVIRQDAADISIQGRHTQGVTLIRLDEGDRVVSLARVVVEENE 814



 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 18/292 (6%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              L     E I  I    E  ++   +Y +   + G +R+       +     + A+ +
Sbjct: 436 RQKLEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRK-------KYGDDRRTAIVI 488

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D  D  +  +   +E+ ++  T  G   R P++  RV   R   G+ G+S    D V  +
Sbjct: 489 DEDDFAVE-DLIAEEDMVVTLTHNGYIKRLPVTTYRVQK-RGGRGITGMSTKGDDFVEHV 546

Query: 739 AIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            +    D      +    Y K +                          ++     +   
Sbjct: 547 FVASTHDYLCCFTNRGKMYRKKVFEIPESGRTTRGVAIVNLLAVEPGEYVTAVIPVKDFN 606

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             QF+   + +G+ K+T   +F I+ R G G+ A  +++      L+ V   N   ++ L
Sbjct: 607 AGQFMFMCTRQGYVKKTPLEEF-INARKG-GLIALSLAE---NDELIDVRLTNGKYEVAL 661

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           V+  G  IR     +R   R+ +GV   S    ++V+S+E +   E+  E E
Sbjct: 662 VTYHGLSIRFAEENVRSMGRSARGVRGISLGPGDKVMSLEVLPP-EMEQETE 712


>gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
 gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1]
          Length = 866

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 549/891 (61%), Gaps = 76/891 (8%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GK
Sbjct: 1   MRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL 
Sbjct: 61  YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYDGS  EP +L AR PN+L+NG  GIAVGMATNIP HNL EVVD C  
Sbjct: 121 DIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NP+  +D L+EI+  PDFPT  +I G  G+++ Y TGRG +V+R ++H E+    + 
Sbjct: 181 LLKNPEATIDELIEIVPAPDFPTAGIIYGVAGVRDGYRTGRGRVVMRALTHFEEIDRGQR 240

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I+V E+PYQVNK ++LE+IAELV EK++  I+D+RDESD+ G RVVIELKRG   +V+
Sbjct: 241 MAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T LQ  F +NMVAL   +P+   L  +L  F++ R EV+ RRT Y L KAR+R
Sbjct: 301 LNNLYKATQLQDTFGMNMVALVDGQPKLLNLKEMLSCFLSHRREVLTRRTVYELRKARER 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID-------- 435
            HVL GLA+A+AN+DE + II+ +P P  A++ELM R W++S +++++   +        
Sbjct: 361 GHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMARPWDSSLVREMLARAETENASAGG 420

Query: 436 ---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                    + S+ + SDG   LS+ Q + IL++RL RLTGL +D I  E   +  +I +
Sbjct: 421 REAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIAD 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+   R+  II +EL S+K E    RR++I     ++  ED I  ++MVVT+SH G
Sbjct: 481 LLDILARPERITAIIVEELTSIKAEFGDARRSKIELNATELNTEDLITPQEMVVTMSHAG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQ+RGG+G+    M+++D++  LFI +TH  +L FS+ G VY  KV+ +
Sbjct: 541 YVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVYSVKVYEV 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS  +RG+ +INI  L +GE+IT ++P  E      + +V   T  G V++  L  F 
Sbjct: 601 PQGSRNSRGRPIINIFPLQEGEKITVVLPVKEFS---ADKFVFMGTALGTVKKTPLEAFG 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           ++ R G IA+ LD  D ++       ++D++L +  G+ VRF  + +R   GR + GVRG
Sbjct: 658 RVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLFSDSGKAVRFDENDVRPM-GREARGVRG 716

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L  G  VI++ +                                              
Sbjct: 717 MQLEDGQNVIALLV---------------------------------------------- 730

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++Q +LT +E GFGKRT   ++    R  KG+ A   S+ N  G +VA   
Sbjct: 731 ------AGDEQQSVLTATENGFGKRTPIIEYTRHGRGTKGMIAIQTSERN--GKVVAATL 782

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+   QI+L+++ G LIR  V+EIR   RAT+GV + S  +  ++  ++++
Sbjct: 783 VDQEAQIMLITNTGVLIRTRVSEIREMGRATQGVTLISLDEGTKLSGLQQV 833



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 81/182 (44%), Gaps = 12/182 (6%)

Query: 727 ISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + L      + D++I     V+   AD  + +   + ++A         +        S 
Sbjct: 454 MRLQRLTGLEQDKIIGEYREVMAQIADLLDILARPERITAIIVEELTSIKAEFGDARRSK 513

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E N +E   ++L   ++ ++T+S  G+ K     ++    R G+G +AT + + + I  
Sbjct: 514 IELNATELNTEDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDT 573

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897
           L   F  N +D I+  S++G +  V V E+   SR ++G  I +     + E++  V  +
Sbjct: 574 L---FIANTHDHILCFSNRGRVYSVKVYEVPQGSRNSRGRPIINIFPLQEGEKITVVLPV 630

Query: 898 RE 899
           +E
Sbjct: 631 KE 632



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 14/245 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   + LG VK+ PL  +   R   KG   V + D D++    I      V+ F
Sbjct: 633 FSADKFVFMGTALGTVKKTPLEAF--GRVLRKGIIAVGLDDGDYLIGAAITDGQHDVMLF 690

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     +ARG   +  + L  G+ +  ++   +         V+ AT
Sbjct: 691 SDSGKAVRFDENDVRPMGREARG---VRGMQLEDGQNVIALLVAGD-----EQQSVLTAT 742

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++     QE  I+L T  G  +R  
Sbjct: 743 ENGFGKRTPIIEYTRHGRGTKGMIAIQTSERNGKVVAATLVDQEAQIMLITNTGVLIRTR 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S IR   GR + GV  ISL +G ++  +  V  A+A+ D                SG  
Sbjct: 803 VSEIREM-GRATQGVTLISLDEGTKLSGLQQVAEAEAEGDAESDAEGPAEGNNAGDSGGE 861

Query: 770 EEITS 774
           E   +
Sbjct: 862 EGGAA 866


>gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153]
          Length = 916

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 547/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900]
 gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
 gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978]
 gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606]
          Length = 904

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/898 (42%), Positives = 548/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D D                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +     + +
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +            + E+ +  
Sbjct: 880 LEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013]
          Length = 916

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/915 (40%), Positives = 548/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    + +     R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPNGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPNGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
 gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506]
          Length = 893

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/905 (40%), Positives = 538/905 (59%), Gaps = 41/905 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL    +  +L D+  +TVDF  N+DGS QEP+VL +R P +LVNG  GIAVGMATNI
Sbjct: 124 ECRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV++G +A+I NP+I    LM+ I GPDFPTGA ILG+  I+ AY TGRGSI +
Sbjct: 184 PPHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQILGKASIREAYTTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        D+E I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR 
Sbjct: 244 RGVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  +L   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQLLSLKQFLSVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL+        
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELI-------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  LSEVQ+ AIL+++L RLT L    I  E   L  +I +
Sbjct: 416 ------------------DTYGLSEVQSDAILQMQLRRLTALEAQKITQEHEELLEKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            LDIL+ R R+L II+ E+  +K +  +PRRT I     ++++ D I  E  ++ ++  G
Sbjct: 458 LLDILAKRERILEIIQTEVAEIKLKFASPRRTIIEHAEGEIDETDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ R  +G++G  M+++D V        H SVLFFS  G VY  + +++
Sbjct: 518 YIKRMPVSTFEAQSRATRGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCLRSYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG  ++ +L +   E+IT+I+   E     N  Y++  T+ G +++  LS F 
Sbjct: 578 PVSSRTARGTPIVQLLPIPIEEKITSIVSVTEFS---NEEYLIMLTRSGFIKKTVLSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGV 724
            I  +G IA+ L+  D++  V     ++ I++ ++ G  + F      +R   GR + GV
Sbjct: 635 NIRANGLIAISLEEGDQLRWVRLARVDDSIIIGSRQGMTIHFRTNHEQLRPV-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L  GD++I M I+  +       +        +  L     E    ++     +  
Sbjct: 694 KSMKLRAGDELIGMDILPSSIVASIAELETEDSELEEEELEVSAQEIEVQVEEIEGSDA- 752

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
              E       +  + L ++  G+GKR     FR+  R+GKG+ AT          + A+
Sbjct: 753 ---EEIPTASSQGPWALVITTNGYGKRVPVTQFRLQRRAGKGLTATKFKSKKAKDYVAAL 809

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN+ND++++V+ +G +IR  VN I   SR   GV +    +D+ +V+V  +  S    
Sbjct: 810 RIVNENDELMIVTSRGIIIRQTVNAISTQSRNATGVRVQRLDEDDSIVAVALVPLSGEES 869

Query: 905 EAEST 909
           E++  
Sbjct: 870 ESDEA 874


>gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
 gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02]
          Length = 916

 Score =  895 bits (2313), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 544/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
 gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1]
          Length = 904

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 545/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  +    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D +                     + +    DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEV------------------ENDESDDNEDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADLNVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    ++++ +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
 gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624]
          Length = 904

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/898 (42%), Positives = 548/898 (61%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D +                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEV------------------ENDESDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 93/265 (35%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +     + +
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSSLV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +         +  + E+ +  
Sbjct: 880 LEGEVDTTETDSEEVVSNNEDTSEE 904


>gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640]
 gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica]
 gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06]
          Length = 912

 Score =  895 bits (2312), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/922 (39%), Positives = 543/922 (58%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G               +          + +  +    +       R     
Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E       +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis]
 gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDPTIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763
           +S+  V   +++  +          +  
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915


>gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 900

 Score =  894 bits (2311), Expect = 0.0,   Method: Composition-based stats.
 Identities = 452/889 (50%), Positives = 614/889 (69%), Gaps = 61/889 (6%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI+DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ MM+   +W K   K ARI 
Sbjct: 20  ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG YHPHG+++IY+A+ RMAQD+S+RL L++GQGNFGSVDGDP AA RYTE RL +A
Sbjct: 80  GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV+F  NYD +  EP VL A YPN+LVNG  GIAVGMATNIP HN GEV
Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +  C A ++NP+I  + L EI+ GPDFPTGA+I+GR GI+ AY TGRGSI++R  + ++ 
Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGALIMGRHGIREAYRTGRGSIIMRARAEVQT 259

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + DRE I+V EIPYQVNKA +LE+I E+VR+K +  I+D+RDESDR G R+VIE+KR A
Sbjct: 260 NAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVKRDA 319

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + DV+LN+LYR+T LQ+ F VNM+A+N  +P +  L  +++AF  FR++VV++RT +LLN
Sbjct: 320 AGDVVLNKLYRHTRLQTSFPVNMLAMNAGRPIQMGLKDVIEAFCEFRKDVVIKRTTFLLN 379

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+RDRAH+L GL +A+A++DE++ +I+ +P+ ETAR EL   +W A ++   I LIDD  
Sbjct: 380 KSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALIDDPG 439

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + +  D    LSEVQ RAILELRL RLTG+ RD +  E   L  +I + LDIL S +R+ 
Sbjct: 440 HAV-VDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTRVS 498

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            +I  EL + ++ L   RRT I + L D +DED I +EDMVVTVSH GY+KRVPLS+YRA
Sbjct: 499 QVILDELAATRERLSDDRRTEITDQLADQDDEDLIQQEDMVVTVSHRGYIKRVPLSIYRA 558

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKGR+G+  RDEDFVT LF+ +THT +LFF+S G VY+ K ++LP  +PQ+ GKA+
Sbjct: 559 QRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPESAPQSLGKAM 618

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L +   E I T+MP P+DESSW +L V+FAT  GNVRRN LSDF  I R+GKIAMK+
Sbjct: 619 VNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNIKRNGKIAMKM 678

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE++ V  C  ++D+L+ T+ G+ +RF  +A+RVF GR+S GVRGI L   D+V+SM
Sbjct: 679 QDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAVRVFRGRDSTGVRGIKLLGKDRVVSM 738

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           +I+   +                                                    +
Sbjct: 739 SIIADPE---------------------------------------------------NE 747

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +IL+V+E G+GKRT   D+R S R G+G+   ++S  N  G ++A F V + DQ++LV++
Sbjct: 748 YILSVTENGYGKRTPIKDYRQSGRGGQGVANIEISPRN--GQVMASFTVVEEDQLMLVTN 805

Query: 859 KGTLIRVPV-----NEIRIASRATKGVVIFSTAK--DERVVSVERIRES 900
           +G +IR+ V     + IRIASR T GV +F  A   DE+VVS   I ES
Sbjct: 806 QGQIIRIRVHGGEGDSIRIASRKTLGVRLFDVADDNDEKVVSAGLIHES 854


>gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A
 gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida]
          Length = 922

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/905 (42%), Positives = 565/905 (62%), Gaps = 29/905 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMA NIP HN
Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+V+GC+A+I+N ++ +D LM  I GPDFPTGA+I GR GI  AY TGRGS+ +R  +
Sbjct: 187 LTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSVYVRAKA 246

Query: 255 HIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +E    +     I+V E+PYQVNKA ++EKIAELV+EK++  I+ LRDESD+   R+VI
Sbjct: 247 EVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG S +++LN LY++T LQ+ F +NMVAL+  +P+   L  IL AF+  R EVV RR
Sbjct: 307 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRREVVTRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+ +L+ R W   ++  +++
Sbjct: 367 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAMLE 426

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              D +             +G  +L+E Q +AIL+LRL +LTGL    I  E  SL   I
Sbjct: 427 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDLI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL+S  RL+ +I+ ELL+V+++    R   I     ++  ED I  ED+VVT+SH
Sbjct: 487 AELLFILASPERLMEVIRDELLAVREQYGDERPPEISASSAEINIEDLITPEDVVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  P++ Y AQRRGG+G+S   +++E+FV  L + +TH ++L FS+ G VY  KV+
Sbjct: 547 QGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTRGKVYWLKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L +GERIT I+P  E     ++ YV FAT  G V++  LS 
Sbjct: 607 QLPEASRGARGRPIINLLPLEEGERITAILPVKEYA---DDKYVFFATADGTVKKTSLSA 663

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   +            
Sbjct: 664 FSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFNEGSAAPM-------- 715

Query: 725 RGISLAKGDQVIS---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           + + L   D V       I    D D  +     +   ++           T+       
Sbjct: 716 QPM-LMSSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAGGVRGIR 774

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             N  +     +   E  ILT +E G+GK T+  ++   +R  +G+R+  V +  +    
Sbjct: 775 LLNGDKVVSLIVPRGEGAILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDEDGK---- 830

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V++  V+D DQI+L+++ GTL+R  V+E+ I  R T GV +  T +DE VV ++RI ES 
Sbjct: 831 VSIDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQRIAESY 890

Query: 902 IVDEA 906
             +  
Sbjct: 891 EEEND 895



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 2/131 (1%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCV 706
           ++ AT++G  +   L+++   +R  +    +    D  +S++     + I+L T  G  V
Sbjct: 793 ILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDEDGKVSIDQVDDTDQIMLITNGGTLV 852

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  +S +    GRN+ GVR I   + + V+ +  +  +  + ++ +     +S       
Sbjct: 853 RTRVSEV-SIIGRNTGGVRLIRTGEDETVVGLQRIAESYEEENDVMAIDGEVSEGTDTAP 911

Query: 767 GDTEEITSLKN 777
                    + 
Sbjct: 912 DAGSAAADPEE 922



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 84/272 (30%), Gaps = 14/272 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  LS +      G     + +++ D +  + I      ++ F
Sbjct: 641 YADDKYVFFATADGTVKKTSLSAFSRPLSSG--IRAINLKEGDELIGVDITDGSNEIMLF 698

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G V +          P             +      +++    D+   +N     +T
Sbjct: 699 SDAGKVVRFNEGSAAPMQPMLMSSD-------DVDGDDESVIDAGNDDDGSDNGEGSEST 751

Query: 653 -KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
              G  +  +          G   ++L + D+++S+     E  IL  T+ G      ++
Sbjct: 752 ESKGTFKGVRPMG---RTAGGVRGIRLLNGDKVVSLIVPRGEGAILTATENGYGKGTALT 808

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                  R + GVR I + +  +V    +              +         I G    
Sbjct: 809 EY-PTKSRGTQGVRSIKVDEDGKVSIDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTG 867

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              L      E  +  +R  E   +E  ++ +
Sbjct: 868 GVRLIRTGEDETVVGLQRIAESYEEENDVMAI 899


>gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis]
 gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis]
 gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis]
 gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763
           +S+  V   +++  +          +  
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915


>gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355]
          Length = 916

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AYPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis]
          Length = 916

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 102/268 (38%), Gaps = 40/268 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRR 763
           +S+  V   +++  +          +  
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPEAE 915


>gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/922 (39%), Positives = 544/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++++DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            RSW +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRSWRSSLVEEMLTRSGLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G               +          + +  +    +       R     
Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E       +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 765 SGGMRGMRLPADGKIVSLITFPAEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
 gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024]
          Length = 904

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLNEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D +                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDAEV------------------ENDESDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVDLEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +       +
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDAEVENDESDDNDDSADSNLV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEF 879

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +         +  + E+ +  
Sbjct: 880 LEGEVDTTETDSEEVVSNNEDASEE 904


>gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970]
          Length = 916

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/921 (39%), Positives = 543/921 (58%), Gaps = 30/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            RSW +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G               +          + +  +    +       R     
Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E       +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAEST 909
           E +VS+ER+ E E   E    
Sbjct: 883 ETLVSLERVAEDEDESELSDA 903



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 105/270 (38%), Gaps = 40/270 (14%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D +           ++ F
Sbjct: 651 FPEDQYVFFATAQGIVKKVRLSAFKNVRAQG--IKAIALKEGDSLIGAAQTGGSDDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQ-------------ARGKALINILS---------------- 623
           S+LG   +   +    G+ +                    N L                 
Sbjct: 709 SNLGKAIRFNEYWEKSGNGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRGSGGM 768

Query: 624 ----LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
               L    +I +++ F  +    + L V+ AT +G  +R  ++D+ + N+ G+  + ++
Sbjct: 769 RGMRLPADGKIVSLITFAPEAGE-SGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAIN 827

Query: 680 SRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           + +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ ++
Sbjct: 828 TGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETLV 886

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLIS 766
           S+  V   + + +     +   + +    +
Sbjct: 887 SLERVAEDEDESELSDASVISGATEPEAEN 916


>gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491]
 gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594]
          Length = 916

 Score =  894 bits (2310), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +++RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVIMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052]
 gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052]
          Length = 828

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 555/903 (61%), Gaps = 91/903 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+   K Y
Sbjct: 4   NEGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++DG + +IDNP+  +  LM  I GPDFPTGA I+G+ GI+ AY TG+G I++R
Sbjct: 184 PHNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIMGKAGIRAAYETGKGKIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R  I+VTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R+V
Sbjct: 244 ANAEIEE-ENGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+  V+LN LY++T LQ  F + M+AL   +P+   L  IL+ +V F++EV+ R
Sbjct: 303 IELKRDANPSVVLNLLYKHTKLQDTFGIIMLALVNNEPKVLNLKQILENYVEFQKEVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM+R           
Sbjct: 363 RTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AILE+RL RLTGL R  I  E N L  +I+    IL
Sbjct: 412 ---------------FELSEKQSQAILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  +LL +IK+ELL +K+     R+++I + + +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEEKLLDVIKEELLEIKNRYSDERKSKIEKIVNEIDIEDLIQEEDVVITLTHSGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  L I STH+ VLFF++ G VYK + + +     
Sbjct: 517 SADTYSSQRRGGKGIQAMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G  LIN++++   E+I T++   +++      ++   TK G V++  LS+F  + ++
Sbjct: 577 QAKGTNLINLIAIEPDEKIQTVLTVTDEK---KEGFLFMGTKQGIVKKTPLSEFKNLRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L V+    + +I++ T+ G  V+F    +R   GR + GV+ I+L +
Sbjct: 634 GLIAISLKDGDELLKVKNTYGDANIMVVTQNGYAVKFNERDVRSM-GRTASGVKAINLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  + M I +  +                                              
Sbjct: 693 DDIAVCMDIAVDGE---------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE G+GKRT   ++++ NR G G+    +S+  + G L        +D
Sbjct: 707 -------ELLVISENGYGKRTPIAEYKLQNRGGVGLITYKISE--KTGKLAGATICKVDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----RESEIVDEA 906
           +++L++  G  IR+ V +I + SR+  GV +  T +DE+VV++ +I     +E+E  DEA
Sbjct: 758 ELMLINSSGVAIRINVADISVTSRSAMGVTLMRTNEDEKVVAIAKILSSDDQETESGDEA 817

Query: 907 EST 909
           ES 
Sbjct: 818 ESE 820


>gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18]
 gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190]
 gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902]
 gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945]
 gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136]
          Length = 916

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
 gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1]
          Length = 818

 Score =  894 bits (2309), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/891 (41%), Positives = 553/891 (62%), Gaps = 86/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +EM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ + ++G+  +K Y K 
Sbjct: 7   KVIPLDINNEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I G+VM  +HPHG++AIYDA+ R+AQD++ R  LI+G GNFGS+DGDPPAA RYTE R
Sbjct: 67  AGIVGKVMQDFHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ K+TVDF PNYD   +EP +L ++ PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKITLEMLADIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +GEV+DG + +I +P++  D LM++I+GPDFPTGA I+G+ GI+ AY TGRGS+ +R  +
Sbjct: 187 MGEVIDGVLMMIKDPNVTPDDLMKVIKGPDFPTGATIMGKDGIRQAYRTGRGSVKMRAQT 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE  +  R  I+V EIPYQVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL
Sbjct: 247 TIETKANGRPVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ ++ +VILN LY++T +Q  F + M+AL   +P+   L  ++  ++  +++V+ RRT+
Sbjct: 307 KKDSNPNVILNLLYKHTQMQESFGIIMLALVNNEPKVLNLAQVIFHYLEHQKDVITRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA  RAH++ GL IA+ANLDEV++ IR S N E ARR L+ +              
Sbjct: 367 YELKKAEARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDK-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AI+E+RL  LT L  + +  E   L  +I     IL+  
Sbjct: 413 ------------FNLTEIQAEAIVEMRLRSLTALEVEKLEKEYKELLEKIDYLRSILADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L II+ ELL VK++    RRT I      D + ED I  EDMVVT+++ GY+KR+ +
Sbjct: 461 QKVLNIIRDELLVVKEKFADARRTLISNVAAGDFDIEDLIDEEDMVVTITNQGYIKRISM 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGGKG + +  ++EDFV DLFI STH  +LFF++ G VY+ KV+ +P  S  A
Sbjct: 521 DTYRSQKRGGKGITAMGTKEEDFVRDLFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN+LS +  E +TT++P  E E      Y+  ATKHG V++  L+++    R G 
Sbjct: 581 KGTPIINLLSFDSDEYVTTVIPIKEFE---ETAYLFMATKHGIVKKTALTEYNSSRRDGL 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD +D++++VE    + +I++ T+ G  +RF    +R   GR + GV+GI+L++ D
Sbjct: 638 IAINLDEKDKLVAVELTHGKEEIIMCTQEGIAIRFSEEDVRPM-GRVTRGVKGITLSQND 696

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ M ++                                                    
Sbjct: 697 HVVKMDVIK--------------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +LTV+  G+GKRT   ++RI  R GKGI     +K N  GA+  V  V++ D++
Sbjct: 706 --EGASLLTVTANGYGKRTPMDEYRIQARGGKGIINIKTTKRN--GAVTGVLVVSEEDEV 761

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++S +G +IR+ V ++    R T+GV +  T +++ +V++ ++   E  +
Sbjct: 762 MMISAEGIIIRINVKDVSSMGRNTQGVTLMRTGENDHIVAIAKVITEENEE 812


>gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
 gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria
           meningitidis ATCC 13091]
          Length = 916

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 880

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 450/873 (51%), Positives = 621/873 (71%), Gaps = 5/873 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y K ARI G+VMGKYHPHG+AAI
Sbjct: 1   MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD+L RMAQD+SL L LI+GQGNFGS+DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDF
Sbjct: 61  YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           RPNYDG+  EPVVL A +P++LVNG  G+AVGMATNIP+HNLGE++D C+  +DNP++ L
Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
           D L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G +HIE    DR+ IV+ EIPY
Sbjct: 181 DELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI+L+R A A  ILNQ+   T L
Sbjct: 241 QVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTPL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           +S FSVN + LN  +P   +L  I++AF+ FR+EV++RRT++ L K R++AH+ +GL IA
Sbjct: 301 RSSFSVNTLVLNNNRPALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           V ++DEV++IIR + +P  A REL+ + W  S+  + I  +   S +   DG   L+E+Q
Sbjct: 361 VLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQ 420

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL+++L RLTGL +D +  EL+S+   IKE +  L S  +L+  IK  L  +K+   
Sbjct: 421 IKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFA 480

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PR+T I E   D+E ED I +EDMV+TV+  GY+KRV LS YR QRRGGKG+ G  +++
Sbjct: 481 VPRKTSIEESDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKE 540

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           ED +T+LF+ +THTSVLFFS++G VY+ KV++LP+  P ARG+AL+NI  L +GE IT I
Sbjct: 541 EDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNI 600

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           MP P +     N  +VF T +GN+RRN L+DF  I  +GKIA+KLD  D+++SV+ C + 
Sbjct: 601 MPLPSEN--DENQNIVFTTAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEI 658

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + + L+T+ G+ +RF +S +R F  RNS GVRGI LAK D VISM I+       + +  
Sbjct: 659 DHVFLSTRFGKSIRFVVSDVRQFKSRNSDGVRGIKLAKNDSVISMTILNGIGVATETKEL 718

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           Y+K   A+R L +     I S    +  +  I  E   +L + E+FILT++E GFGKRTS
Sbjct: 719 YLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTITENGFGKRTS 777

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           +Y++RI+NR G GI     +  N  G +VA FPV   D I+L++DKG LIR+ VN+IRIA
Sbjct: 778 AYEYRITNRGGVGITNILTTSRN--GNVVASFPVEQGDNIMLITDKGKLIRISVNDIRIA 835

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 836 GRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 868



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 18/232 (7%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D V   +  G   R  +S  R              R+ D V  + +    + +      G
Sbjct: 659 DHVFLSTRFGKSIRFVVSDVRQ----------FKSRNSDGVRGIKLAKNDSVISMTILNG 708

Query: 597 FVY----KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
                  KE   ++P+               L +      I      + + N  +++  T
Sbjct: 709 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 768

Query: 653 KHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R    ++   NR G      +       +++     Q ++I+L T  G+ +R  
Sbjct: 769 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRIS 828

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           ++ IR  AGR++ GV        ++V+S+A +   D+  D        +S+Q
Sbjct: 829 VNDIR-IAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEVENSISSQ 879


>gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 916

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/915 (39%), Positives = 543/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 823

 Score =  893 bits (2308), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/899 (41%), Positives = 548/899 (60%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  V I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   DEGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +IDNPDI +  LM  I+GPDFPT  +I+G +GI++AY TGRG I++R
Sbjct: 183 PHNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGTSGIRSAYETGRGKILVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I++TEIPYQVNK+ ++E +A+LV+ K+I  I+D+RDESDR G R+V
Sbjct: 243 AKAEIEEVK-GRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LNQLY++T +Q  F + M++L   +P+   L  +L  ++ F+EE+V R
Sbjct: 302 IELKRDANPNVTLNQLYKHTRMQDTFGIIMISLVNNEPKVLNLKQMLVYYLQFQEEIVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA+ RAH+L GL IA+ ++DEV+ +IR S   E AR  LM             
Sbjct: 362 RTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 411 ---------------FSLSEKQAQAILDMRLQRLTGLEREKIENEYNELMETIKHLKEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++  LL IIK EL+ ++D+    R+T I     D+  ED I  +++V+T++H GY+KR+
Sbjct: 456 ENKELLLKIIKDELIEIRDKYGDERKTEIQISNDDINIEDLIEEQEVVITLTHSGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH ++LFF++ G VYK K + +P    
Sbjct: 516 SADTYSSQRRGGKGIQAMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N++ L   E+I  ++ F E      + Y + AT+ G +++ K+S +  I ++
Sbjct: 576 TAKGTNLVNLIPLQGDEQIQAVISFKE---VDKDNYFIMATRCGLIKKTKISQYASIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V   T E++IL+ TK G  +RF    +R   GRN+ GVR I+L  
Sbjct: 633 GLNAINLKDEDELIGVRMTTGESEILIFTKNGYAIRFSEDDVRP-TGRNTTGVRAITLRT 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  ++M IV  +                                               
Sbjct: 692 GDIAVAMDIVDKSQD--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE GFGKRT   ++ I  R GKGI    V++  + G +V    V D D
Sbjct: 707 --------VLVISENGFGKRTPVSEYTIHRRGGKGIITYKVTE--KTGLIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++L++     IR+ V+EI + +R T GV +  T +++RVV++ +I  S+   +  S +
Sbjct: 757 EMMLINSSNVAIRLNVSEISVTNRNTMGVTLMRTDEEQRVVAIAKINCSDDTSDNTSND 815


>gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica]
          Length = 912

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/922 (39%), Positives = 544/922 (59%), Gaps = 30/922 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTINACLRLLDAPETEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +VIR  +H E    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I++
Sbjct: 241 YKTGRGRVVIRAKTHTEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            RSW +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARSWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      R + I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERLSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGIVKKVRLSAFKNVRAQGIKAIALKEGDSLIGAAQTGGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G               +          + +  +    +       R     
Sbjct: 718 --NEYWEKSG-----------NGEAEDADSETSDGIEDENADSENALPGGKYGVRPSGRG 764

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E       +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 765 SGGMRGMRLPADGKIVSLITFAPEAGESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 824

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 825 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 882

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           E +VS+ER+ E E   +   TE
Sbjct: 883 ETLVSLERVAEEETETDMPETE 904


>gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU]
 gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|294840722|ref|ZP_06785405.1| DNA gyrase, A subunit [Acinetobacter sp. 6014059]
 gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056]
 gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059]
 gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii ACICU]
 gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057]
 gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2]
 gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter
           baumannii TCDC-AB0715]
          Length = 904

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/898 (42%), Positives = 547/898 (60%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D D                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +     + +
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +            + E+ +  
Sbjct: 880 LEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 904

 Score =  893 bits (2307), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  +    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELALVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIVNLLPLDANETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VDLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D D                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDESDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSNLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 91/265 (34%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVDLEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +       +
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDESDDNDDSADSNLV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEF 879

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +            + E+ +  
Sbjct: 880 LEGEVDTTETDSEEAVSNNEDASED 904


>gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121]
 gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121]
          Length = 893

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/907 (43%), Positives = 558/907 (61%), Gaps = 77/907 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M +   +WNK 
Sbjct: 3   ELAKEITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G V+GKYHPHG+ A+YDA+ R+AQ +S+R  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH  L DL K+TVDF PNYDG+   P V+  R P +LVNG  GIAVGMATNI
Sbjct: 123 TEIRMEKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A+IDN  I +D LME I GPDFPT A I GR GI +AY TGRG I +
Sbjct: 183 PPHNLSEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFINGRAGIVDAYKTGRGKIYM 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   HIE       E IV TEIPYQ+NKA ++EKIAELV++K++  I++LRDESD+ G R
Sbjct: 243 RARHHIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG +ADV++N L+  T LQ +F +NMVAL   +PE   L  +L+ FV  R EVV
Sbjct: 303 IVIELRRGENADVVVNNLFIQTQLQGVFGINMVALVDGRPELLNLKQVLECFVKHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+R HVL GLA+A+AN++E++ +IR SP    A+ +L+ ++W   D+  
Sbjct: 363 TRRTIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSA 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG+ YLS VQ +AIL+LRL RLTGL  + ++NE  +L 
Sbjct: 423 MLERAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALI 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I E L IL+S +RL+ +I++EL  +K +    RRT I+    D+   D I    MVVT
Sbjct: 483 ELIAELLHILASPARLMEVIREELEEIKAQFGDVRRTEILTSRQDLTVADLIDEAPMVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY K  PL  Y+AQRRGG+G+S   M+DED ++ L + S+H +++ FS+ G VY  
Sbjct: 543 ISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPF-----------PEDESSWNNLYVVF 650
           +V+ +P+ S  A+G+ ++N+L L++GE I+ ++P              + S     ++  
Sbjct: 603 RVFEIPVASRNAKGRPIVNLLPLSEGESISALLPLVAPEKSDAEDAETEVSEDAESFIFM 662

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT +G V++  +  F +   +G IA+ LD  DE++ V      +DI+L +  G+ +RF  
Sbjct: 663 ATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSSTGKTIRFKE 722

Query: 711 SAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S +R   GR + GVRGI L A+G +V+S+ +     +                       
Sbjct: 723 SDVRAM-GRTAAGVRGIKLAAEGAKVVSLIVPEEGMS----------------------- 758

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +LT  E G+GKRT+  DF +  R G+G+  
Sbjct: 759 ------------------------------VLTACEHGYGKRTAIDDFPVYGRGGQGVIG 788

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             VS  N  G +V    V D+D+IIL++D+GTL+R  V+E+    R T+GV +     +E
Sbjct: 789 IQVSDRN--GPVVGAVQVADDDEIILITDQGTLVRTRVSEVSCQGRNTQGVTLIRLTNEE 846

Query: 890 RVVSVER 896
           ++V V R
Sbjct: 847 QLVGVVR 853



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 89/259 (34%), Gaps = 14/259 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D E E     E  +   +  G VK+  +  +   R  G     +   DE     +   +
Sbjct: 646 EDAETEVSEDAESFIFMATANGTVKKTAMQHFARPRSTGLIALSLDESDELVGVSI--TN 703

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            +  ++  SS G   + K   +      A   A +  + L         +  PE      
Sbjct: 704 GNDDIMLVSSTGKTIRFKESDVRAMGRTA---AGVRGIKLAAEGAKVVSLIVPE-----E 755

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701
            + V+ A +HG  +R  + DF    R G+  + +   D     +       +++I+L T 
Sbjct: 756 GMSVLTACEHGYGKRTAIDDFPVYGRGGQGVIGIQVSDRNGPVVGAVQVADDDEIILITD 815

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +S +    GRN+ GV  I L   +Q++ +  V+  D D ++          +
Sbjct: 816 QGTLVRTRVSEV-SCQGRNTQGVTLIRLTNEEQLVGVVRVVEDDEDIEDVEGEAVEEGVE 874

Query: 762 RRLISGDTEEITSLKNDSS 780
               +              
Sbjct: 875 ANAETAPETAEPDAGESEQ 893


>gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 916

 Score =  892 bits (2306), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/915 (39%), Positives = 544/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P  ++D L++II+ PDFPTGA I G  G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            + +I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQKEIIESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899


>gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
 gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp.
           ADP1]
          Length = 909

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/911 (41%), Positives = 542/911 (59%), Gaps = 46/911 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQD+SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K  H LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +L EV+  C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 HLNEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+D+++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  +    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  +  +    RRT+IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E IT I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFL---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V     +  I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+       V   A V   D + D                     +      +S
Sbjct: 720 TAKGVRGMR------VTLAAAVDSEDTELDH--------------------DELDDSEES 753

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 754 TDSSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 811

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV    ++   +++L+SD GTL+R    E+ +  R  +GV +   +  E +V V  I  
Sbjct: 812 ELVGAVSIDGTKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSIEA 871

Query: 900 SEIVDEAESTE 910
            E  +  E  E
Sbjct: 872 VEDDEFIEVVE 882



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/441 (13%), Positives = 142/441 (32%), Gaps = 39/441 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +  A     L         +                ++Q+  +    + +   ID 
Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELSLILQQYGDERRTQIVESRIDF 531

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
               +  +  + L+  QT       L+      R    ++  +    +I + L + S+ +
Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHA 591

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L       +      + P+ +R  +G   +        E +   +             
Sbjct: 592 TVLCFTNVGKVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENHYVFM 651

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VKRV L  +   R  G     + + +ED +  + I      ++ FS+ G   + 
Sbjct: 652 ATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRF 709

Query: 602 KVWRLPIGSPQARGKALINIL------------------SLNQGERITTIMPFPEDESSW 643
               +      A+G   + +                      +    + +          
Sbjct: 710 AETDVRAMGRTAKGVRGMRVTLAAAVDSEDTELDHDELDDSEESTDSSVVSRIVSLVVVP 769

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700
               V+ A+ +G  +R  ++DF    R   G IA+K      E++   +     +++L +
Sbjct: 770 ETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDGTKELMLIS 829

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  VR   + +    GRN+ GVR I L+  + ++ +  +   + D    +       +
Sbjct: 830 DGGTLVRTRAAEV-AMTGRNAQGVRLIRLSDAETLVGVVSIEAVEDDEFIEVVEEIATES 888

Query: 761 QRRLISGDTEEITSLKNDSSV 781
           +   +     +  S  + ++ 
Sbjct: 889 EITEVDQPEIDSESSDSAATE 909


>gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
 gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2]
          Length = 852

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/907 (42%), Positives = 556/907 (61%), Gaps = 92/907 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ERPSSGVEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  GYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  LL DL K+TVD+R NYDG  +EP+VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESKMSKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+LGE +D  +A+ DNP I  + LME I GPDFPTG +ILGR+GI+ AY TG+GS++
Sbjct: 183 IPPHHLGETIDAVLALADNPAITTEELMEHIEGPDFPTGGIILGRSGIRRAYETGKGSVL 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR V  IE     +E I+V EIP+QVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 IRSVVDIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R ASA V+LN LY+ T++Q+ F +NM+AL   +P+  +L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDASASVLLNNLYKQTAMQTSFGLNMLALVDGRPKVLSLKEILFHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA DRAH+L GL IA+ ++D ++ +IR S   E AR  LM           
Sbjct: 363 RRRTQFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMT---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q++AIL++RL RLTGL RD I  E  +L   I+E   
Sbjct: 413 ----------------DFNLTERQSQAILDMRLQRLTGLERDKIEEEYQALVKLIEELRY 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L IIK+E+L +KD     RRT I   G    EDED I  E  V+T++H GY+
Sbjct: 457 ILANEYRILEIIKEEMLEIKDRFSDKRRTEITTGGAEMFEDEDLIPVEATVLTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P + YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY++K +++P 
Sbjct: 517 KRLPANTYRSQKRGGRGVQGMGTNEDDFVEHLLYTSTHDTILFFTNKGKVYRKKGYQIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  L+N+L +++ E++T ++   E +    + +  F T+ G  +R  ++++  I
Sbjct: 577 YGRTAKGLPLVNLLEISKEEKVTAVIRVKEFK---EDSFFFFTTREGLSKRTPVTNYANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G IA+ L   DE++SV+      ++++ TK G  +RFP + IR   GR + GVRGI 
Sbjct: 634 RQNGLIAISLREEDELISVKLTDGTKEMVIGTKDGALIRFPETDIRSM-GRTASGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+ M I+   D                                           
Sbjct: 693 LREGDAVVGMEILDPNDN------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GK+T   ++R+ +R G GI+   ++  N  G LVAV  VN
Sbjct: 711 -----------VLVITEKGYGKQTKESEYRVQSRGGMGIKTCQITDKN--GPLVAVRTVN 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER------IRESEI 902
             + I+L++  G LIR+ VN+I    R+T+GV +     DE V +V +      + E   
Sbjct: 758 GTEDIMLITVNGILIRMDVNDISTTGRSTQGVRLIRLGDDEVVATVAKVKKDIDVPEELE 817

Query: 903 VDEAEST 909
            D  E+T
Sbjct: 818 DDNTETT 824



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 89/259 (34%), Gaps = 16/259 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +      +  G  KR P++ Y   R+ G     + +R+ED +  + +      ++  
Sbjct: 607 FKEDSFFFFTTREGLSKRTPVTNYANIRQNG--LIAISLREEDELISVKLTDGTKEMVIG 664

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G + +     +      A G   I         R+         E    N  V+  T
Sbjct: 665 TKDGALIRFPETDIRSMGRTASGVRGI---------RLREGDAVVGMEILDPNDNVLVIT 715

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           + G  ++ K S++   +R G         D+    ++V T     DI+L T  G  +R  
Sbjct: 716 EKGYGKQTKESEYRVQSRGGMGIKTCQITDKNGPLVAVRTVNGTEDIMLITVNGILIRMD 775

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ I    GR++ GVR I L   D+V++    +  D D  E +      +        + 
Sbjct: 776 VNDI-STTGRSTQGVRLIRLG-DDEVVATVAKVKKDIDVPEELEDDNTETTINENAEANE 833

Query: 770 EEITSLKNDSSVEGNISEE 788
                  +          E
Sbjct: 834 SVANDQVDSIEETPEEDGE 852


>gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii SDF]
 gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii]
          Length = 904

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/898 (42%), Positives = 547/898 (60%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPT  +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFL---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D D                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 ADSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 870



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 142/436 (32%), Gaps = 40/436 (9%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +  A     L         +               +++Q+  +A   + +   +D 
Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDF 531

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
               +  +  + L+  QT       L+      R    ++  +    +  + L + S+ +
Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHA 591

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L       +      + P+ +R  +G   +        E +   +             
Sbjct: 592 TVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFLENHYVFM 651

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ FS+ G   + 
Sbjct: 652 ATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709

Query: 602 KVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTIMPFPEDESS 642
               +      A+G   +                        +     + +         
Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLVSRIVSLVVV 769

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699
                V+ A+ +G  +R  ++DF    R   G IA+K      E++   +  +  ++LL 
Sbjct: 770 PETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDETKELLLI 829

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + +     +    
Sbjct: 830 SDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIETVEDEEELLEGEVDTTE 888

Query: 760 AQRRLISGDTEEITSL 775
                   + E+ +  
Sbjct: 889 TDSEEAVSNNEDTSEE 904


>gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
 gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453]
          Length = 832

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/891 (41%), Positives = 546/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    I    I  EM+ S++ YA+++I+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   EENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+T+DF PNYDG   EPVVL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I NPDI    LME I+GPDFPT   ILGR GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFILGREGIRQAYRTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +IVV EIPYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN LY++T++QS F +NM+A+   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFYYLEHQVIVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I NE   L  +I E  +
Sbjct: 413 -----------------FGLSQEQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II  EL  +K+     RRT I  G   + DED I RE++++T++H GY+K
Sbjct: 456 ILANEHLVLQIINDELQEIKERFSDERRTEITVGEDSILDEDLIPREEVIITITHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + YR+Q+RGG+G  G+  + EDFV  LF+ ++H  ++FF+  G  Y+ K + +P  
Sbjct: 516 RLPANTYRSQKRGGRGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P    +   ++ ++ FAT+ G V++  L D++ I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPVENFD---SDNFLFFATRQGVVKKTPLEDYVNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + +I++ T  G  +RF  S +R   GR++ GV+GI+L
Sbjct: 633 KGGLIAINLREDDSLIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSM-GRSATGVKGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI M +V                                                
Sbjct: 692 DDDDEVIGMDVVDR---------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  IL V+ KG+GKRT + D+R   R GKGI+  ++++ N  G +VA+  V  
Sbjct: 706 -------ELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKN--GPVVALKVVKS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +++++  GT+IR  +  I    R  +GV + +  +D+ V +V R  +S
Sbjct: 757 EEDLMIITSSGTIIRTSMEGISTMGRYAQGVKLINIREDDSVGTVCRADKS 807


>gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21]
 gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21]
          Length = 862

 Score =  892 bits (2305), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/908 (40%), Positives = 554/908 (61%), Gaps = 86/908 (9%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +   + D        I  +SI +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+
Sbjct: 1   MADETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM+ +GV   K Y K ARI G+V+GKYHPHG++++YD + RMAQ+WSLR  L++GQGNFG
Sbjct: 61  GMLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE RL++ A  +L D+ KDT+D++ N+D S QEP VL  + PN+LVNG
Sbjct: 121 SIDGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATN+  HNL EV+DG VA IDN DI +  LM+ I+ PDFPTG VI G  G++
Sbjct: 181 ASGIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIYGYAGVQ 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +A+ TGRG +V+R  + IE +  D+E I+VTEIPYQVNKA M+++ A+LV EK+I  I+ 
Sbjct: 241 DAFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISA 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESDR G R+V ++KR A+A ++LN L++YT+LQ+ FSVN +AL   +P    L  ++
Sbjct: 301 IRDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALVHGRPMLLNLKDMI 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EV++RRTK+ L +A  RAH+L GL IA+ +LDEV+++IR S  PE AR  LM
Sbjct: 361 HHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           ++                            LS++Q RAIL++ L RLTGL RD I+ E  
Sbjct: 421 EK--------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYA 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I+    +L+     + IIK ELL VK++    RR++IV    DM  ED I  E++
Sbjct: 455 ELMKTIEYLKSVLADEGLRMKIIKDELLEVKEKFGDERRSQIVHSAEDMRMEDFIDDEEI 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T+SH GYVKR PL+ YR Q RGGKG  G   ++EDF   +   S H  +LFF+  G  
Sbjct: 515 VITISHEGYVKRTPLTEYRLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRC 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGN 656
           +  + + +P G+  +RG+A+ NI+++ + E+I   +      D+    N +++  TK G 
Sbjct: 575 FWLRAFEIPEGTRTSRGRAIQNIINIPKEEKIKAYIKVKNLKDQDYLENNFIIMCTKGGT 634

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++  L  + +   +G  A+ ++  D++L        ++I++  K G+ +RF  S +R  
Sbjct: 635 IKKTSLEAYSRPRANGINAININEGDQLLEACLTNGNSEIVMALKSGRAIRFNESTVRPM 694

Query: 717 AGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GR + GVRG++LA   D+V+ M  V   DA                             
Sbjct: 695 -GRTATGVRGVTLAGPDDEVVGMISVNTNDAT---------------------------- 725

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   IL VSEKG+GKRT   D+R++NR GKG++  +V++ 
Sbjct: 726 ------------------------ILVVSEKGYGKRTDIDDYRVTNRGGKGVKTLNVTE- 760

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G LVA+  V DND +++++  G +IR+ V+++R+  RAT+GV + +  +++++ S+ 
Sbjct: 761 -KTGLLVAIKDVTDNDDLMIINRSGIVIRIAVSQLRVMGRATQGVRLINLKENDQIASIT 819

Query: 896 RIRESEIV 903
           ++   E+ 
Sbjct: 820 KVDHDEVE 827



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 98/251 (39%), Gaps = 13/251 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             + ++  +  G +K+  L  Y   R  G   + + + + D + +  + + ++ ++    
Sbjct: 622 ENNFIIMCTKGGTIKKTSLEAYSRPRANG--INAININEGDQLLEACLTNGNSEIVMALK 679

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +      A G   + +   +                + N+  ++  ++ 
Sbjct: 680 SGRAIRFNESTVRPMGRTATGVRGVTLAGPDDEV-------VGMISVNTNDATILVVSEK 732

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + D+   NR GK    L+  ++    ++++  T  +D+++  + G  +R  +S
Sbjct: 733 GYGKRTDIDDYRVTNRGGKGVKTLNVTEKTGLLVAIKDVTDNDDLMIINRSGIVIRIAVS 792

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +RV  GR + GVR I+L + DQ+ S+  V H + +  +         A           
Sbjct: 793 QLRVM-GRATQGVRLINLKENDQIASITKVDHDEVEGLDVTETSVGNDASTENEGEVDNS 851

Query: 772 ITSLKNDSSVE 782
            +    D + E
Sbjct: 852 TSDKGQDETNE 862


>gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275]
 gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149]
 gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 916

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013]
          Length = 916

 Score =  892 bits (2304), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/915 (40%), Positives = 546/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DREEIVESYKNLMGKIIDFVDILSKPERITRIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
 gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603]
          Length = 892

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/902 (43%), Positives = 562/902 (62%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   I E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + Y+VFAT+ G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELENDESISTMIAVKDLE--SEDDYLVFATRKGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     E DIL+ T     +RF   A+R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +                                               
Sbjct: 694 TLREGDEVVGLDVAHAN------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 711 --------SEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    R+ +GV +     D+ V +V ++++ +  DEAE
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAE 820

Query: 908 ST 909
           S 
Sbjct: 821 SD 822


>gi|169830227|ref|YP_001716209.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
 gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C]
          Length = 812

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/887 (43%), Positives = 541/887 (60%), Gaps = 86/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  + I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  +K + K 
Sbjct: 7   KIVPIDINEELKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEV+ K HPHG+AA+YDAL R+AQD++ R  L++G GNFGS+DGD  AA RYTE R
Sbjct: 67  AYVVGEVLSKLHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +L D+ K+TVDF PNYDG+ +EPVVL +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARITSQMLADIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DG V + D+PD +L+ LM  I GPDFPTG  I+GR GI  AY TGRGSI +RG +
Sbjct: 187 LKEVIDGLVYLADHPDAELEDLMRFIPGPDFPTGGKIMGRHGIVEAYRTGRGSIKMRGHA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E+    R +IV+TE+PYQVNKA ++EKIA LVREK+I  I+DLRDESDR+G RVVIEL
Sbjct: 247 EFERVGS-RTRIVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  + ++ LN LY++T LQ  F V ++AL   +P+   L  IL  ++  + EV+ RR +
Sbjct: 306 RREVNPEITLNLLYKHTQLQDNFGVILLALVDGQPQVLALKDILSHYLGHQREVITRRCR 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L++A+ R H++ GL IA+A+LDEV++ IR S +   AR  LM                
Sbjct: 366 YELSQAQARLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMA--------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLT L RD + NE N L   I+    +L+  
Sbjct: 411 -----------GFGLSEKQAQAILDMRLQRLTALERDKLENEFNDLVAAIERLEALLADE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L ++K+ELL+V+D+   PRRT +V    D   ED I +ED V+ +++ GY+KR+P S
Sbjct: 460 QKILAVVKEELLAVRDKFADPRRTELVAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPS 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VYR+QRRGG+G +GV  + +DFV  LF+  TH  +LFF+  G VY+ KV+ +P    QAR
Sbjct: 520 VYRSQRRGGRGIAGVETKVQDFVRHLFVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQAR 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N++ +  GER+T ++P  E      + ++   T+ G V++  L +F    R G I
Sbjct: 580 GTAVVNLIPVANGERVTAVIPVTEYS---GDAFLFMVTRKGIVKKTVLQEFDSARRDGLI 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++ V+    ++++LL T+ G  +RFP   +R   GR + GVRGISL +GD 
Sbjct: 637 ALTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPM-GRTAHGVRGISLREGDM 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M IV   D                                                 
Sbjct: 696 VVGMDIVDPDD------------------------------------------------- 706

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L VSEKG+GK T   +FR+ +R G G+ A  VS  N  G LV++  V   ++I+
Sbjct: 707 ----QLLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRN--GPLVSLSLVGRGEEIL 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +VS  G LIR+ ++EI    R  +GV +   A  + VV+V  I   +
Sbjct: 761 IVSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPGDAVVAVAWILPED 807



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/214 (21%), Positives = 90/214 (42%), Gaps = 15/214 (7%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V+  G VK+  L  + + RR G     + + + D + D+ I    + VL  +  G V 
Sbjct: 611 FMVTRKGIVKKTVLQEFDSARRDG--LIALTLDEGDELVDVKITDGKSEVLLGTRNGMVI 668

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +    ++      A     +  +SL +G+ +  +           +  ++  ++ G  + 
Sbjct: 669 RFPEGQVRPMGRTA---HGVRGISLREGDMVVGMDIVD------PDDQLLVVSEKGYGKV 719

Query: 660 NKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             + +F   +R G   +          ++S+    +  +IL+ +K G  +R  I  I  F
Sbjct: 720 TPVKEFRVQSRGGFGLIAARVSGRNGPLVSLSLVGRGEEILIVSKSGILIRMKIDEIPQF 779

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            GR + GVR + LA GD V+++A +L  D    E
Sbjct: 780 -GRQAQGVRLMRLAPGDAVVAVAWILPEDPPQGE 812


>gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121]
          Length = 892

 Score =  891 bits (2303), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/902 (43%), Positives = 562/902 (62%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDISISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   I E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLAYIDELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIKERYGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + Y+VFAT+ G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELENDESISTMIAVKDLE--SEDDYLVFATRKGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     E DIL+ T     +RF   A+R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTDGEEDILIGTAHASLIRFSEKALRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +                                               
Sbjct: 694 TLREGDEVVGLDVAHAN------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 711 --------SEDEVLVVTENGYGKRTPVADYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    R+ +GV +     D+ V +V ++++ +  DEAE
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRSAQGVRLMRLGDDQFVSTVAKVKQEDDADEAE 820

Query: 908 ST 909
           S 
Sbjct: 821 SD 822


>gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1]
          Length = 862

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/877 (45%), Positives = 550/877 (62%), Gaps = 68/877 (7%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPV RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD +
Sbjct: 1   VGRALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF PNY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL EV+DGC+A I++ +I ++ LM
Sbjct: 121 DGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVN 276
           E I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVN
Sbjct: 181 EYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVGEVVLNNLYSLTQLQVT 300

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  IL AFV  R EVV RRT + L KARDRAH+L  LAIA+AN
Sbjct: 301 FGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALAN 360

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMY 448
           +D ++ +IR +  P  A+  L+   W   ++  +++   D +             DG  Y
Sbjct: 361 IDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGKYY 420

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q +AIL+LRL +LTGL  + + +E   L   I E + IL +  RL+ +I++EL+++
Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVAI 480

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K++ +  RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S 
Sbjct: 481 KEQYNDLRRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSA 540

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   E
Sbjct: 541 ARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNE 600

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           RIT I+P  E E      +V  AT  G V++  L++F +   +G IA+ L+  DE++ V+
Sbjct: 601 RITAILPVREYEEGC---HVFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVD 657

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                N+++L + LG+ VRFP   +R   GR + GVRGI+L   D+VIS+ I        
Sbjct: 658 LTDGSNEVMLFSALGKVVRFPEGQVRSM-GRTATGVRGINLNGDDRVISLII-------- 708

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                           +  ILTV+E G+
Sbjct: 709 ---------------------------------------------PRGDGEILTVTENGY 723

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT+  ++   +R+ +G+ +  VS+ N  G +V    V   DQI++++D GTL+R  V+
Sbjct: 724 GKRTAVAEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMITDAGTLVRTRVS 781

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           E+ +  R T+GV +  TA+DE VV ++R+ E E  D+
Sbjct: 782 EVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPEEDDD 818


>gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 894

 Score =  891 bits (2302), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/902 (43%), Positives = 557/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y
Sbjct: 5   PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R
Sbjct: 185 PHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
             + IE+  G R++IVVT+IPYQVNKA M+EKIAELVREK+I  I DLRDE+  R G RV
Sbjct: 245 ARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++++ A+A+VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV 
Sbjct: 305 VIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R          
Sbjct: 365 RRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL RLTGL RD I NE N L   I E  +I
Sbjct: 415 ----------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y+K
Sbjct: 459 LADDEVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  
Sbjct: 519 RLPVSTYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q++G  +IN + L+  E I+T++     E    + Y+VFATK+G V+R+ LS+F  IN
Sbjct: 579 SRQSKGIPVINAIELDNDETISTMIAVRNLE--DEDSYLVFATKNGIVKRSALSNFSHIN 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++GKIA+     DE+++V       DIL+ T     +RF  +++R   GR + GVRGISL
Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+ + +                                                 
Sbjct: 696 REDDVVVGLDVAHAD--------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  VN 
Sbjct: 711 ------SEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNG 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEAES 908
            + +++V++ G +IR+ V +I    RAT+GV +     D+ V +V + I ++E  D  E+
Sbjct: 763 EEDLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEA 822

Query: 909 TE 910
            +
Sbjct: 823 AQ 824


>gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
 gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF]
          Length = 830

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/893 (43%), Positives = 567/893 (63%), Gaps = 85/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  ++I  EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++GV  +K 
Sbjct: 3   DNKDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R LL++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  ++ D+ K+TVD+RPN+D + +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V +ID+ + +++  ME I+GPDFPTG +ILG  GIK+AY TGRG I +
Sbjct: 183 PPHNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGTEGIKDAYTTGRGKIKV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ S  R+ I+V EIPYQVNKA ++EKIAELVR+K+I  I+DLRDESDR+G R+
Sbjct: 243 RAKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LN+LY++T L+  F V M+A+   +P+   L  +L  ++  +++++V
Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQPKVLNLKEVLTHYLNHQKDIIV 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA DRAH+L GL IA+ NLDEV+++IR S N + A+  LM++          
Sbjct: 363 RRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL +LTGL  + +  E   L   I    +I
Sbjct: 413 ----------------FSLSEKQAQAILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++   LL IIK+ELL ++++    RRT I      +   D +  ED+V+T++H GY+KR
Sbjct: 457 LANERLLLDIIKEELLEIREKYADKRRTEIAIDPGSINMIDLVDEEDVVITLTHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  YR+Q+RGGKG SGV  RDEDFV  L I STH+ +LFF++LG VYK  V+ +P G 
Sbjct: 517 LPIDTYRSQKRGGKGISGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGR 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I  ++P   D    N  Y+V AT+ G +++ +L  F    +
Sbjct: 577 RQAKGTAIVNLLQLSANEKIAAVIPVDRD---CNEQYLVMATQKGIIKKTELCQFDNTRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G +A+ +   DE++SV    +E +I + T  G  +RF    +R   GR ++GV+GI+LA
Sbjct: 634 TGLMAINIREDDELISVRLINKEQEIFMITSQGMSIRFKEDNVRDM-GRTAMGVKGINLA 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V++M                                                    
Sbjct: 693 EKDYVVAM---------------------------------------------------- 700

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E+    + +L VSE G GKRT   ++R+  R GKGI+   VSK  + G L+    V D+
Sbjct: 701 -EVLEDNKDLLVVSENGLGKRTDLSEYRLQTRGGKGIKTYKVSK--KTGNLIGAKIVEDH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+I+L++++G +IR+ V  I    RAT+GV + +T  ++ +VS+ +I   E V
Sbjct: 758 DEILLMTNEGIVIRLNVKGISKMGRATRGVTLMNTGTEKSIVSIAQIPYHEEV 810


>gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
 gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442]
          Length = 916

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/915 (40%), Positives = 545/915 (59%), Gaps = 28/915 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+D ++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
              W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 AHPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I     +L  +I + +DILS   R+  II+ EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +     +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V + D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEG 884

Query: 889 ERVVSVERIRESEIV 903
           E +VS+ER+ E E  
Sbjct: 885 ETLVSLERVAEDESE 899



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 768

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 769 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 828

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 829 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 887

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 888 VSLERVAEDESELSDASVISNVTEPE 913


>gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
 gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H]
          Length = 908

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/913 (42%), Positives = 558/913 (61%), Gaps = 86/913 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KQIVPVNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A+IDN ++  + ++E I GPDFPT  +I GR GI+ AY TGRG I IR  
Sbjct: 186 NLTEVINACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRAR 245

Query: 254 SHIEKTSG-DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + I+      +E I+V E+PYQVNKA ++EK+AELV++KR+  I+ LRDESD+ G R+VI
Sbjct: 246 ASIDVHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +V+LN LY+ T +Q  F +NMVAL   +P+ F +  +L+AFV  R EVV RR
Sbjct: 306 EIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GL+IA+AN+D ++ +I+ S N + +  +L+ + W   ++ +++ 
Sbjct: 366 TIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLS 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
              + +             DG  YL+  Q +AI++L+L +L+G+  D I +E  +L   I
Sbjct: 426 EAGNDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL++ +RL+ +I +EL++++DE    RRT I     D+  ED I  ED+VVT+SH
Sbjct: 486 AELMHILATPARLMEVICEELVAIRDEFGDERRTEITNASHDLSLEDLITEEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FS  G +Y  KV+
Sbjct: 546 EGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLYWLKVF 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARG+ ++NIL L   ERIT I+P  +     ++ Y+V AT  G V++ +L  
Sbjct: 606 QLPLASRTARGRPIVNILPLESDERITAILPVRDYA---DDKYIVMATASGTVKKTRLDA 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------AIRVFA 717
           +     +G IA+ L   D ++ V+     ND++L +  G+ VRF           I++  
Sbjct: 663 YSNQRANGIIALNLRDDDTLIGVDITDGTNDVMLFSDAGKVVRFNEKVRDSETGEIKLDP 722

Query: 718 ------------GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                       GR   GVRGI L    +V+S+ I                         
Sbjct: 723 ETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLII------------------------- 757

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  ILT++E GFGKRT   ++   +R+ K
Sbjct: 758 ----------------------------PKNDGPILTITENGFGKRTDLAEYPAKSRATK 789

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+ +  VS+ N  G +V    V D D+I+L++D GTL+R  VNE+ +  R T+GV +  T
Sbjct: 790 GVVSIKVSERN--GKVVGAVQVEDLDEIMLITDSGTLVRTRVNEVSVIGRNTQGVRLIRT 847

Query: 886 AKDERVVSVERIR 898
           A DE VV+++RI 
Sbjct: 848 ADDEHVVALQRID 860



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 97/271 (35%), Gaps = 17/271 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +V  +  G VK+  L  Y  QR  G     + +RD+D +  + I      V+ F
Sbjct: 640 YADDKYIVMATASGTVKKTRLDAYSNQRANG--IIALNLRDDDTLIGVDITDGTNDVMLF 697

Query: 593 SSLGFVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDES 641
           S  G V +    V     G  +   +      +L    R  T +                
Sbjct: 698 SDAGKVVRFNEKVRDSETGEIKLDPETGEQRWALKPIGRTGTGVRGIKLEGEQKVVSLII 757

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILL 698
             N+  ++  T++G  +R  L+++   +R+ K  + +       +++        ++I+L
Sbjct: 758 PKNDGPILTITENGFGKRTDLAEYPAKSRATKGVVSIKVSERNGKVVGAVQVEDLDEIML 817

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR  ++ +    GRN+ GVR I  A  + V+++  +   +   +         
Sbjct: 818 ITDSGTLVRTRVNEV-SVIGRNTQGVRLIRTADDEHVVALQRIDEIEEPAELEEVAEGDE 876

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             +  +     +           + +  + +
Sbjct: 877 VIETSVEPSSEDNPEHSAQQDVADTSQDDNQ 907


>gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
 gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9]
          Length = 895

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/906 (41%), Positives = 549/906 (60%), Gaps = 77/906 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   K    VS+ +EM+ SYL+Y+++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WNK
Sbjct: 2   DSFAKETLPVSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K +H +L DL K+TVDF PNYDGS  EP +L  + P +L+NG  GIAVGMATN
Sbjct: 122 YTEIRLEKISHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DGC+  + NPD  +D L+E I  PDFPTG +I G +G++  Y TGRG ++
Sbjct: 182 IPPHNLSEVIDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIYGYSGVREGYRTGRGRVI 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +HIE       + I++ EIPYQVNK  + EKIA+LV EKRI  I+D+RDESD+ G 
Sbjct: 242 MRAKTHIEDFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG  ADV+LN L++ T LQ  F +N+VAL   +P+   L  ++  F+  R EV
Sbjct: 302 RLVIELKRGEVADVVLNNLFKLTQLQDTFGMNLVALVNGQPKLLNLKELVVYFLQHRREV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KAR+  H L GLA+A+AN+DE ++II+ S +P+ A   LM R W++S +K
Sbjct: 362 ITRRTVFELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVK 421

Query: 429 DLIDLIDDS----------------SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            L+  +D+                  Y + +DG  YLS  QTR IL + L RLTGL ++ 
Sbjct: 422 SLLSRVDEDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDE 530
           I +   +    I + LDILS   R+  II +EL+++K+E      RR++I    ++ E E
Sbjct: 482 IISSYEAAMDAITDLLDILSKPERITAIIGEELIAIKNEYTIKDARRSQIEYNAVEFETE 541

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I   DMVVT+S+ GY+K  PLS Y+AQ RGGKG+    M+D DFV  LFI +TH  VL
Sbjct: 542 DLITPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVL 601

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSSLG +++ KVW +P G   ++G+ ++N+  L + E+IT ++P  +     ++ ++  
Sbjct: 602 CFSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFS---DDQFIFL 658

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  LS +    +   IA+ LD  D ++  E     +DI+L +  G+ VRF  
Sbjct: 659 ATAKGVVKKTALSQYSSTRKMAVIAVTLDEDDYLVGAELTDGNSDIMLFSNAGKAVRFDE 718

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S++R   GR+S GV G+ L +G  +IS+ +  +                           
Sbjct: 719 SSVRA-TGRSSRGVLGMRLEEGQSIISLIVSKN--------------------------- 750

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                    +  ++LT +E G+GKRT   ++    R  KG+ A 
Sbjct: 751 -------------------------ENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIAI 785

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S+ N  G +VA   V+++D+I+L++  G ++R  V  IR   RAT+GV +     D +
Sbjct: 786 QTSERN--GKVVAAVLVDESDEIMLITTDGIVVRTKVAPIRELGRATQGVKLIRIDNDTK 843

Query: 891 VVSVER 896
           +  V+R
Sbjct: 844 LKGVQR 849



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 75/447 (16%), Positives = 174/447 (38%), Gaps = 30/447 (6%)

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            R  L   L+      +E ++   +  ++   D   +L       A + E +  I+    
Sbjct: 463 TREILNMNLRRLTGLEQEKIISSYEAAMDAITDLLDILSKPERITAIIGEELIAIKNEYT 522

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGS--DGTMYLSEVQTRAILELRLARLTG 467
            + ARR  ++ +    + +DLI  +D            +  LSE Q +           G
Sbjct: 523 IKDARRSQIEYNAVEFETEDLITPMDMVVTLSNEGYIKSQPLSEYQAQN------RGGKG 576

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
               ++++      + I    D +   S L  + + ++  V       +   IV      
Sbjct: 577 KKATEMKDNDFVQQLFIANTHDYVLCFSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQ 636

Query: 528 EDEDC--------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           E+E             +  +   +  G VK+  LS Y + R+       V + ++D++  
Sbjct: 637 ENEKITVVLPIKQFSDDQFIFLATAKGVVKKTALSQYSSTRK--MAVIAVTLDEDDYLVG 694

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
             +   ++ ++ FS+ G   +     +      +RG   +  + L +G+ I +++     
Sbjct: 695 AELTDGNSDIMLFSNAGKAVRFDESSVRATGRSSRG---VLGMRLEEGQSIISLI----- 746

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDI 696
            S   N YV+ AT++G  +R  + ++ +  R   G IA++      ++++     + ++I
Sbjct: 747 VSKNENAYVLTATENGYGKRTPVVEYTRHGRGTKGMIAIQTSERNGKVVAAVLVDESDEI 806

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L T  G  VR  ++ IR   GR + GV+ I +    ++  +  V+ + ++ +  +    
Sbjct: 807 MLITTDGIVVRTKVAPIREL-GRATQGVKLIRIDNDTKLKGVQRVVESVSESEVGLDSDT 865

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEG 783
            +  +  +   + ++   L++  S   
Sbjct: 866 VVENEYSVNQINKDDADYLESTDSSTE 892


>gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
 gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119]
 gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80]
          Length = 884

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/901 (43%), Positives = 560/901 (62%), Gaps = 84/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D   +  I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  
Sbjct: 2   ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGS
Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLILGKSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           I +R  + IE+  G R++IVVTEIPYQVNKA M+EKIAEL REKRI  I DLRDE+  R 
Sbjct: 242 IQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLRT 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVI++++ A+A+VILN LY++T LQ+ F VNM+AL   +P+   L   L  ++  ++
Sbjct: 302 GVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALVNGRPKLINLKEALVEYLEHQK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L +R      
Sbjct: 362 TVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQER------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q +AIL++RL RLTGL RD I NE N L   I E
Sbjct: 416 --------------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAE 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHL 545
             +IL++   LL +++ EL  +K+     RRT I  G LD  EDED I  E +V+T+SH 
Sbjct: 456 LEEILANEEVLLQLVRDELTEIKERFGDERRTEIQLGGLDHLEDEDLIPEEQIVITLSHN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + 
Sbjct: 516 NYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYE 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S Q++G  +IN + L   E I+T++   + E    N ++VFATK G V+R+ LS+F
Sbjct: 576 VPELSRQSKGIPVINAIELENDEVISTMIAVRDLE--DENSFLVFATKKGIVKRSALSNF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             IN++GKIA+     DE+++V     + DILL T     +RFP +++R   GR + GVR
Sbjct: 634 SHINKNGKIAIGFKEDDELIAVRLTDGKQDILLGTAHASLIRFPENSLRPL-GRTASGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL + D V+ + +                                             
Sbjct: 693 GISLRENDVVVGLDV--------------------------------------------- 707

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  +L V+EKG+GKRT   ++R+SNR GKGI+   +++ N  G +V + 
Sbjct: 708 ------AYAESEDEVLVVTEKGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNVVCIT 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+  + +++V+D G +IR+ V +I    RAT+GV +     ++ V +V ++ +    + 
Sbjct: 760 TVSGQEDLMIVTDGGIIIRLQVEDISQNGRATQGVRLMKLGDNQAVSTVAKVIDKTEDEA 819

Query: 906 A 906
           A
Sbjct: 820 A 820



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 76/516 (14%), Positives = 168/516 (32%), Gaps = 38/516 (7%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R    LK+      IL  L             +   +  K    TL    K      + +
Sbjct: 367 RTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKLSERQAQAI 426

Query: 369 VVRRTKYL--LNKARDRAHVLVGLAIAVANLDEVVR---IIRFSPNPETARRELMQRSWN 423
           +  R + L  L + +        L+      + +     +++   +  T  +E       
Sbjct: 427 LDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIKERFGDERR 486

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                  +D ++D          + LS      I  L ++      R     +  +   E
Sbjct: 487 TEIQLGGLDHLEDEDLIPEEQIVITLS--HNNYIKRLPVSTYRSQNRGGRGVQGMNTLEE 544

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCI------ 533
                 +  S    +     +    K +        R+++ +  +  +E E+        
Sbjct: 545 DFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELENDEVISTMI 604

Query: 534 -----VREDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                  E+  +   +  G VKR  LS +    + GK    +  +++D +  + +     
Sbjct: 605 AVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKI--AIGFKEDDELIAVRLTDGKQ 662

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L  ++   + +     L      A G   I++   +    +       EDE       
Sbjct: 663 DILLGTAHASLIRFPENSLRPLGRTASGVRGISLRENDVVVGLDVAYAESEDE------- 715

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI----LSVETCTQENDILLTTKLG 703
           V+  T+ G  +R  +S++ +++  G   +K     E     + + T + + D+++ T  G
Sbjct: 716 VLVVTEKGYGKRTPVSEY-RLSNRGGKGIKTAKITERNGNVVCITTVSGQEDLMIVTDGG 774

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  +  I    GR + GVR + L     V ++A V+    D        +   A  +
Sbjct: 775 IIIRLQVEDI-SQNGRATQGVRLMKLGDNQAVSTVAKVIDKTEDEAATEAAQQTEHASAQ 833

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                 E++       +     S+E  +  ++++ F
Sbjct: 834 TTESANEQVIDDTTPGNALHTESDEDDERTEVRQDF 869


>gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
 gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075]
          Length = 834

 Score =  891 bits (2301), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/901 (43%), Positives = 537/901 (59%), Gaps = 87/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++     V I +E++ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++  ++NK 
Sbjct: 3   PKDARKEDVRIEEEIRRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YDAL RMAQD+++R  L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A+ LL D+ KDTVDF  NYDGS +EPVVL  + P +L+NG  GIAVGMATNI
Sbjct: 123 TEVRMAKLANELLADIDKDTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV    VA++DNPDI +  LM  + GPDFPT   I G  GI+ AY  GRGSI I
Sbjct: 183 PPHNLGEVARALVALLDNPDIGVRELMRHVPGPDFPTRGFIHGAEGIEQAYRDGRGSIQI 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  ++IE      +  I+VTE+PYQVNKA +LEK+AELV++K+I  I+DLRDESDR G R
Sbjct: 243 RAKANIETVARTKKTSIIVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV +L+R A   V+LNQL+++T +Q+ F +NM+A++  +P    L  +L+ F+  R E+V
Sbjct: 303 VVFDLRRDAVPQVVLNQLFKFTQMQTTFGINMLAIDRGRPRLMGLKDVLELFIEHRREIV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT + L KA  RAH+L GL IA+ NLDEV+ +IR + NP  A+  LM R         
Sbjct: 363 LRRTAFDLAKAEARAHILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSR--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AILE+RL RLTGL RD I  E   +  EI     
Sbjct: 414 -----------------FSLSEKQAQAILEMRLQRLTGLERDKIMAEYREVIKEIARLRH 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S   +  II++E L + +E    RRT IV  + D+E ED I  E+MVVT+SH GY+K
Sbjct: 457 ILESDEEVRRIIREETLLLAEEFGDKRRTEIVGRVSDIELEDMIAEEEMVVTLSHGGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R P S+YRAQRRGGKG  G+  +DEDFV DLF  STH+ +L F+  G +Y  KV  +P  
Sbjct: 517 RTPTSLYRAQRRGGKGSRGMATKDEDFVEDLFTASTHSYLLIFTDAGRLYWLKVHEIPQA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              +RGKA++N++ +   E ++T++   E         V+ AT+ G +++ +L  F +  
Sbjct: 577 GRASRGKAIVNLVQMLPDESVSTVLAVREFV---EGRQVIMATQKGVIKKTELMSFSRPR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G IA+ L   D ++S      E ++ L T+ GQ +RF  S +R   GR + GV+GI +
Sbjct: 634 AGGIIAINLAEGDHLVSARLTDGEMEVFLATRQGQAIRFHESQVRSM-GRAAAGVKGIDV 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              DQV++M  V                                                
Sbjct: 693 EHDDQVVAMEAV------------------------------------------------ 704

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +LT++E GFGKRT   ++   NR+GKG+     +  N  G +V+   V D
Sbjct: 705 -----AGAPTMLTITENGFGKRTRMDEYPARNRAGKGVITIKTTTRN--GHVVSALVVGD 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D+++L++D G +IR+ V  I +  R T+GV +      ER+V+V R+ E    DE E+ 
Sbjct: 758 DDEVMLITDVGKVIRMKVGGISVIGRNTQGVKLIDLEPGERLVAVARLAEP-GDDEVEAG 816

Query: 910 E 910
           E
Sbjct: 817 E 817


>gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
 gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202]
          Length = 904

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/899 (41%), Positives = 546/899 (60%), Gaps = 45/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  +    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  V  +    RRT I+E  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIREELAQVLQQYGDGRRTEIIESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+ +DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ +IN+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFL---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VDLEQFSNIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRSM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ ++     I+   +   DA+ +                     + +    DS
Sbjct: 720 TAKGVRGMRVS-----IASNTLSEEDAEIEN--------------------DESDDNEDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 AELSVVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    ++++ +++L+SD GTL+R    E+ +  R  +GV +   +++E +V V  I 
Sbjct: 813 ELVGAVSIDESKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIE 871


>gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
 gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/902 (43%), Positives = 559/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +                                               
Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    RA +GV +      + V +V +++E +  +E  
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENV 820

Query: 908 ST 909
             
Sbjct: 821 DE 822


>gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
 gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863]
          Length = 813

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/893 (41%), Positives = 531/893 (59%), Gaps = 83/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  I  EM+ SYLTY+++VI+GRA+PD+RDGLKPV RRIL+ M + G   +K 
Sbjct: 4   DFAQRILTKEIKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G+V+ KYHPHG+AA+YD + RMAQD+ LR  L+EGQGNFGS+DGDPPAA RY
Sbjct: 64  FRKSAKTVGDVLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + AH +L D+ K+TVDF  NYD S +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 124 TEARLSRLAHEMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG + +ID PDI ++ L  II+GPDFPTGA+ILG  GI+ AY TG+GSI +
Sbjct: 184 PPHNLGEVIDGIIRLIDQPDISIEELNRIIKGPDFPTGALILGHEGIRRAYQTGKGSITL 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE     R +IVVTE+PY VNKA ++E+IAEL R+++I  I DLRDESDR G R+
Sbjct: 244 RARTQIETLQNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IEL+R A+  VILNQL++YT+LQ  F + M+AL   +P    L  +L  ++  + EV+V
Sbjct: 304 AIELRRDANPHVILNQLFKYTALQQNFGIIMLALVENRPRLLNLKQMLHYYLQHQLEVIV 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA DRAH+L GL  A+  +DEV+  IR SP  + AR  LM            
Sbjct: 364 RRTQFDLQKALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMS----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +EVQ + IL+++L RLT L R+ ++ E + L   I     +
Sbjct: 413 ---------------NFGFTEVQAQHILDMQLRRLTALEREKLQEEYDELQDRIAYYRAV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S      IIKQEL  +K +   PRRTRI     D++ ED I  ED+VVT+SH GY+KR
Sbjct: 458 LASEKMQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVVVTISHSGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPLS YR QRRGG+G  G   ++EDF+  +F  +TH  ++FF+  G VY+ +   +P  S
Sbjct: 518 VPLSTYRQQRRGGRGVQGAGTKEEDFIEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEAS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QARG A++N++ L  GE++ T++P  E        Y+ FAT+ G V++  +++F  +  
Sbjct: 578 RQARGTAIVNLIPLLPGEKVNTVIPVKE--GDQEEGYIFFATRSGWVKKTAVTEFQNVRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL+  D ++        ++I+L +  G  +RF    +R   GR++ GV+GI+L 
Sbjct: 636 TGIIAIKLEEGDTLVGARLTRGNDEIILVSSAGYALRFHEDDVRPM-GRDTRGVKGITLG 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V+ M  V+                                                
Sbjct: 695 PDEYVVGMDGVVP----------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSE G GKRT   ++    R  +G+    +      G LV V  V + 
Sbjct: 708 ------GADLLVVSETGVGKRTPLTEYPTYKRGARGVITIQLLP-ERHGRLVGVKAVTEG 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + ++LVS++G LIR+PV E+R + R T+GV + +   ++RV +V ++   +  
Sbjct: 761 NDLMLVSEQGVLIRIPVEEVRRSGRNTQGVQLMNLDANDRVSAVAQVVTRDEE 813



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    A Y   +   K      +   G+ ++       + +  +  +   ++L   E  +
Sbjct: 447 LQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGDPRRTRITPDDGDIDIEDLIADEDVV 506

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S  G+ KR     +R   R G+G++     + + I  +   F    +  ++  +D+G
Sbjct: 507 VTISHSGYIKRVPLSTYRQQRRGGRGVQGAGTKEEDFIEHI---FTTTTHHDMMFFTDQG 563

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            + R+  +EI  ASR  +G   V +      E+V +V  ++E +  +
Sbjct: 564 RVYRIRCHEIPEASRQARGTAIVNLIPLLPGEKVNTVIPVKEGDQEE 610


>gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032]
 gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus
           SAFR-032]
          Length = 839

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/894 (42%), Positives = 551/894 (61%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NP++    LM+II GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S+IE+TS  +++IV+ EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKSNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+  V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+          
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I +E   L   I E   
Sbjct: 413 ----------------NYSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV  G+  +EDED I  E++V+T++H GY+
Sbjct: 457 ILADNEKVLEIIREELTEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +    N Y+ F T+HG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFD---ENSYLFFTTRHGVSKRTTLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E  I++ TK G  +RF  + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++ D V+ M                                                  
Sbjct: 693 LSEDDIVVGM-------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-- 846
              E+   +  +L V+EKG+GK T   ++R+ +R GKG++   ++  N  G LVAV    
Sbjct: 703 ---EILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKGLKTCKITDNN--GPLVAVKATN 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               + +++++  G +IR+ V++I    R T+GV +     +E V +V  + +S
Sbjct: 758 AEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQS 811



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 136/403 (33%), Gaps = 37/403 (9%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A+ ++V+ IIR        R    +R+     +   I+ I+D       +  + L
Sbjct: 454 LKAILADNEKVLEIIREELTEIKERFNDTRRT---EIVTAGIETIEDEDLIPVENIVITL 510

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +      I  L  +      R     +      +      I +S    +     +    +
Sbjct: 511 T--HNGYIKRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYR 568

Query: 510 DE---LDTPRRT------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +   +    RT               E +  +           +   +  G  KR  LS
Sbjct: 569 AKGYEIPEFGRTAKGIPIINLLEVEKGEWINAIIPVSEFDENSYLFFTTRHGVSKRTTLS 628

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +   R  G     + +RDED +  + + +    ++  +  G + +     +      A 
Sbjct: 629 QFANIRNNG--LIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGRTA- 685

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SG 672
             A +  ++L++ +           E    +  V+  T+ G  +     ++   +R   G
Sbjct: 686 --AGVKGITLSEDD------IVVGMEILEPDANVLIVTEKGYGKLTPEKEYRVQSRGGKG 737

Query: 673 KIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
               K+   +  L     T    E D+++ T  G  +R  +S I    GR + GVR I L
Sbjct: 738 LKTCKITDNNGPLVAVKATNAEAEEDLMIITGSGVIIRMAVSDI-STTGRVTQGVRLIRL 796

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
              + V ++A+V  +  D ++    ++++     + S   +  
Sbjct: 797 GDEEHVATVALVEQSPEDDEDNEENVENIENIENIESDQEQSE 839


>gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
 gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143]
          Length = 858

 Score =  890 bits (2300), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/918 (41%), Positives = 558/918 (60%), Gaps = 72/918 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   +   +    I  V+I DE++ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MSDLTNAPSNQ----ILPVNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++  +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+
Sbjct: 57  SELNNDWNKSYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R++K +H +L DL K+TVD+ PNYDG+ Q P V+  + PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEIRMRKISHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV  C+A+IDNPDI +D L+EII GPDFPT A+I GR GI  A
Sbjct: 177 GIAVGMATNIPPHNLNEVVTACLALIDNPDITIDELIEIIPGPDFPTAAIINGRAGIVQA 236

Query: 241 YATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TG+G I IR  + +E      ++ I+++E+PYQVNKA ++EKIAELV+EK+I  IA+L
Sbjct: 237 YRTGKGRIYIRSRAVVETNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAEL 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIE+KRG   +V LN LY  T L+++F +N+VAL   +P    L  +L+
Sbjct: 297 RDESDKDGLRVVIEMKRGEMGEVCLNNLYSQTQLENVFGINIVALVDGQPRLLNLKQLLE 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV RRT YLL +AR+R H+L GLA+A++N+D ++ +I+ S     A+ +L  
Sbjct: 357 YFVRHRREVVTRRTVYLLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSA 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRD 471
           + W   D+  ++    +S+             DG  +LS  Q +AIL++RL +LTGL  +
Sbjct: 417 QGWELGDVSQMLARAGESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHE 476

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E      EI E L IL    +L+ +I++EL ++ +E    RR+ I+E   D+  ED
Sbjct: 477 KLLKEYQEKLEEIAEYLSILGDAVKLMTVIREELDAIVNEYGDERRSEIIESTRDLTAED 536

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED VVT+SH GY K   LS Y+AQRRGG G+S   ++DEDFV  L I STH ++L 
Sbjct: 537 LITEEDRVVTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILC 596

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS++G VY  KV+ +P+ S  ARG+ ++N+L L + ERIT+I+P  E        Y+  A
Sbjct: 597 FSNVGKVYWLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYT---EGHYIFMA 653

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T +G V++ +L++F +    G  A++L+  D ++         D++L +  G+ VRF  +
Sbjct: 654 TANGTVKKTELTNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNEN 713

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GVRGI +A G ++IS+ +                               
Sbjct: 714 DVRAM-GRTAKGVRGIRMADGQKMISLLV------------------------------- 741

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       +L+VSE G+GKR+   +F    R  KG+    
Sbjct: 742 ----------------------PKDGGRMLSVSENGYGKRSEFAEFATKGRGNKGMIFMQ 779

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S+ N  G ++    V D D+++++SD+GT++R   +EI +  R T+GV +    + E V
Sbjct: 780 ASERN--GEIIGAVQVFDGDELMMISDQGTMVRTRTDEISVLGRNTQGVRVIRLKEGEHV 837

Query: 892 VSVERIRESEIVDEAEST 909
           V VERI E E +   E  
Sbjct: 838 VGVERIEEPEEIAPFEDA 855


>gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
 gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs]
          Length = 819

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/892 (41%), Positives = 567/892 (63%), Gaps = 85/892 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+   I  ++I  EM+NSY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M+++G+  +K 
Sbjct: 3   EKRGNIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG+ A+YDA+ R+AQD+S+R +L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ KDTVD+RPN+D S +EP VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARLSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG V +IDN +  ++ LME I+GPDFPT A I+G  GIK AY TGRG I +
Sbjct: 183 PPHNLGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGTEGIKEAYTTGRGRIKV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ +  R+QI++TEIPYQVNKA ++EKIAELVR+K++  I+DLRDESDR+G R+
Sbjct: 243 RAKASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LN+LY++T L+  F V M+A+   +P+   L  +L  ++  +++++ 
Sbjct: 303 VIELKRDANANVVLNKLYKHTQLEDTFGVIMLAIVNGEPKVLNLKEVLTHYLDHQKDIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA +RAH+L GL IA+ NLDEV+++IR S N + A+  LM+           
Sbjct: 363 RRTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLME----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q +AIL++RL +LTGL  + +  E   L   I    +I
Sbjct: 412 ---------------TFTLSEKQAQAILDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++   +L IIK EL+ +K++    RRT I   + ++  ED I  E++V+T++H GY+KR
Sbjct: 457 LANERLMLNIIKDELIEIKEKYGDERRTEITRAIGEINIEDMITEEEVVITLTHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGGKG + +  R+EDFV +L   S+H  +LFF++ G VYK  V+ +P   
Sbjct: 517 LPADTYKSQKRGGKGIAALTTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEAR 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N++ L+  E +   +P       +++ Y+V ATK+G +++ +LS F    +
Sbjct: 577 RQAKGTAIVNLIPLSPNETVAATIPV---GRQFDSKYLVLATKNGIIKKTQLSQFESTRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ +   DE++ V+   ++++I+L T  G  +RF    +R   GR+++GV+GI+L+
Sbjct: 634 SGLIAISIREDDELIKVKLTDEDSEIILITAQGMSIRFKEQDVRDM-GRSAMGVKGINLS 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+SM IV                                                 
Sbjct: 693 PKDHVVSMEIVEENKD-------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L +SEKGFGKRT + ++R+  R GKGI+  +V+   + G LV    V D 
Sbjct: 709 ---------LLVISEKGFGKRTDTSEYRLQTRGGKGIKTYNVT--GKTGPLVGAKIVTDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           D+++L+++ GT+IR+ V+ I    R TKGV +    +D+ ++++  +  +E 
Sbjct: 758 DEVLLINNYGTVIRLNVSNISKLGRNTKGVTLMRMEEDQSIITIALMASTEN 809


>gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
 gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A
 gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A]
          Length = 893

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/902 (43%), Positives = 558/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +                                               
Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E  
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820

Query: 908 ST 909
             
Sbjct: 821 DE 822


>gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A
 gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228]
 gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135]
 gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144]
          Length = 893

 Score =  890 bits (2299), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/902 (43%), Positives = 558/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +                                               
Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E  
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820

Query: 908 ST 909
             
Sbjct: 821 DE 822


>gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028]
          Length = 894

 Score =  889 bits (2298), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/902 (43%), Positives = 558/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +                                               
Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E  
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820

Query: 908 ST 909
             
Sbjct: 821 DE 822


>gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 864

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/907 (41%), Positives = 542/907 (59%), Gaps = 54/907 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E  ++ I +  + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   SQESPQERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTP 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGS+D DPPAA
Sbjct: 64  DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAA 123

Query: 128 ERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTE RL+      LL D+ ++TVDF  N+DGS QEP+V+ AR P +L+NG  GIAVGM
Sbjct: 124 MRYTESRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNLGE+++G +A+I NP+I  + LM+ I GPDFPTGA ILG TGI+ AY TGRG
Sbjct: 184 ATNIPPHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGTTGIREAYTTGRG 243

Query: 247 SIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDE
Sbjct: 244 SITMRGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDE 303

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIELKR A   V+LN LY+ T LQ  F  NM+AL   +P+  TL   L  F+
Sbjct: 304 SDRDGMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGEPQLLTLKEFLHEFL 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR +V+ RRT+Y   KA +R H+L GL IA++NLD V+ +IR + +  TA++EL+    
Sbjct: 364 KFRIQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELI---- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                  +  LSE Q  AIL+++L RLT L  + I+ E   L  
Sbjct: 420 ----------------------DSYGLSEPQADAILQMQLRRLTALEAEKIQREHEDLVA 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL    R+L II+ E+  +K    +PRRT I +   +++  D I  +  V+ V
Sbjct: 458 QIADFQDILDRPERILSIIQTEVEQLKTRFASPRRTVIEQLEGEIDTTDLIANQKAVILV 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+P+  + AQ R G+GR G  ++++D V   F    H  +LFFS  G  Y  K
Sbjct: 518 TEQGYIKRMPVDTFEAQSRDGRGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLK 577

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +++PIGS  ARG  ++ +L + + E+IT+++P  E      + Y+V  T  G +++  L
Sbjct: 578 AYQIPIGSRNARGVPIVQLLPIPREEKITSVVPVDEFR---EDEYLVMLTAGGYIKKTAL 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRN 720
           S F  I  +G IA+ L++ D++  V    + + I++ ++ G  + F      +R   GR 
Sbjct: 635 SAFSNIRANGLIAIALETGDQLRWVRRAREGDSIIIGSRQGMAIHFRTDHEQLRPL-GRA 693

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVR ++L  GD++I M I+  A             + ++        EEI    ++  
Sbjct: 694 TRGVRAMALRAGDELIGMDILPSAIVANLAVATSDAEVESEEGAEEMPLEEIPINADN-- 751

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++L V+  GFGKR     FR+ NR+GKGI AT          
Sbjct: 752 ---------------PGPWVLVVTTCGFGKRVPVSQFRLQNRAGKGITATKFKTRQTQDQ 796

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L A+  VN  D++++V+++G +IR  V  I   SRA  GV +    +++ + +V  +  +
Sbjct: 797 LAALRIVNGEDELMIVTNRGIIIRQSVGAISSQSRAATGVRLQRLDEEDSIAAVTIVPST 856

Query: 901 EIVDEAE 907
           E+ D  E
Sbjct: 857 ELTDSEE 863


>gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/897 (40%), Positives = 555/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D     + Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKD--QTADHYLFFATRQGIVKRTNVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R   GR + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                                                 
Sbjct: 693 EGDHLVGATIVSD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L +SE G+GKRT + ++    R GKGI    V+  N  G L  +  V  +
Sbjct: 706 ------DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  +  I    R+T GV +    ++ ++++   +  ++  ++ E
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAADQKEQEE 814


>gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
 gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207]
          Length = 893

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 401/894 (44%), Positives = 549/894 (61%), Gaps = 68/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G +WNK Y K
Sbjct: 6   QEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL+DL KDTVDF PNYD + Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+NP+I +D LME I GPDFPT A+I GR GI  AY TGRG I +R  
Sbjct: 186 NLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAIINGRAGIIQAYRTGRGRIYVRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I++TEIPYQ+NKA ++E+IAELV+EK++  I++LRDESD+ G RVVI
Sbjct: 246 ADIEVNEKTRRETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KR    +V+LN L+  T LQS+F +N+VAL   +P+   L  ++  F+  R EVV RR
Sbjct: 306 EIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQPKILNLQQLIHHFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+RAH L G AIA+ N+DE++ +I+ SP+   AR  L+ R WN   +  ++D
Sbjct: 366 TIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQMLD 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  +LS  Q + ILELRL RLTG+  D I  E      EI
Sbjct: 426 RAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKLEEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E  DIL   +RL+ +I++EL +V +E    RRT I+E L D+  ED I  ED VVT+S+
Sbjct: 486 AEYQDILGDLTRLMTVIREELEAVVEEFGDERRTEIIESLHDLTIEDLITEEDRVVTISN 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY K  PLS Y+AQRRGG G+S   ++DEDFV  L + STH ++L F++LG VY  KV+
Sbjct: 546 GGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFTNLGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+    +RG+ +IN+L L +GERI++I+P  E      + +V+ AT +G V++  L  
Sbjct: 606 QIPVAGRNSRGRPVINLLPLGEGERISSILPVEEYS---ADKFVIMATANGTVKKTSLEQ 662

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +    G  A+ L   D ++       ++D++L +  G+ VRF  +  R   GR S GV
Sbjct: 663 YSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLSSEGKAVRFASTDARSM-GRVSKGV 721

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L +G +VISM +                                            
Sbjct: 722 RGMRLPEGHEVISMVVPEEDG--------------------------------------- 742

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                         F+LTV E G+GKRT   +F    R GKG+ A   S+ N  G LV  
Sbjct: 743 --------------FLLTVCENGYGKRTKVDEFPTKGRGGKGMIAIQASERN--GPLVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +   D+I+L+SD+GT++R   +E+ +  R T+GV I      E +V + RI 
Sbjct: 787 TQLFAGDEIMLISDQGTMVRTRGDEVSVVGRNTQGVRIIRLKDSENLVRLARIA 840



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 88/268 (32%), Gaps = 15/268 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    +  V+  +  G VK+  L  Y   R  G     +V  D    T +      + V+
Sbjct: 638 EEYSADKFVIMATANGTVKKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAIID--DDSDVM 695

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             SS G   +            ++G   +         R+              + +++ 
Sbjct: 696 LLSSEGKAVRFASTDARSMGRVSKGVRGM---------RLPEGHEVISMVVPEEDGFLLT 746

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
             ++G  +R K+ +F    R GK  + + + +     +        ++I+L +  G  VR
Sbjct: 747 VCENGYGKRTKVDEFPTKGRGGKGMIAIQASERNGPLVGATQLFAGDEIMLISDQGTMVR 806

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                +    GRN+ GVR I L   + ++ +A +   + +         + +A     + 
Sbjct: 807 TRGDEV-SVVGRNTQGVRIIRLKDSENLVRLARIAEPEEEEFVAEDAADNNTALDDNTAE 865

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKL 795
            + +  +    S    +           
Sbjct: 866 GSSDDNTSDGSSEDNTSDGSSEDSSADE 893


>gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA]
 gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA]
          Length = 848

 Score =  889 bits (2297), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/898 (42%), Positives = 555/898 (61%), Gaps = 86/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  + S+ I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 4   NEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEKGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G++GI+ AY TG+G I++R
Sbjct: 184 PHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIMGKSGIRAAYETGKGRIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+   +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R+V
Sbjct: 244 AKAEIEE-ENNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ +VILN LY++T +Q  F V M+AL   +P+   L  +L  ++ F++EVV R
Sbjct: 303 IELKKDANPNVILNLLYKHTKMQDTFGVIMLALVNNEPQVLNLKQVLANYIEFQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AILE+RL RLTGL RD I  E   L   I     IL
Sbjct: 412 ---------------FQLSEKQAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  +LL +IK EL+ +K+  +  RRT I + + D++ ED I  E++V+T++H GY+KR+
Sbjct: 457 ASEEKLLSVIKDELIEIKNRYNDERRTSIEKVVNDIDIEDLIQEEEVVITLTHSGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGG+G   +  +++DFV  + +VSTH+ VLFF++ G VYK + + +P    
Sbjct: 517 SADTYSSQRRGGRGIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN++++ Q E+I T++   +D    N  ++   TK G V++  LS+F  + ++
Sbjct: 577 TAKGTNIINLIAIEQDEKIETVLSVKDDV---NEGFLFMGTKQGLVKKTPLSEFKNLRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L V+    + DI++ T+ G  +RF  + +R   GR + GVR I+L K
Sbjct: 634 GLIAINLRDGDELLKVKITRGDADIVIVTQDGNAIRFNETDVRPM-GRTASGVRSINLRK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  + M I +  +                                              
Sbjct: 693 DDIAVCMDIAVEGED--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE GFGKRT   +++   R G G+    +S+  + G ++       +D
Sbjct: 708 --------LLVISENGFGKRTPITEYKRQKRGGTGLITYKLSE--KTGKVIGATICKIDD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++L++  G  IR+ V++I + SR+T GV +  T ++E++ ++ +I  S    E + T
Sbjct: 758 ELMLINTSGVAIRINVSDISVTSRSTMGVTLMRTTEEEKIAAITKISGSIDDKEEQLT 815


>gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
 gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061]
          Length = 833

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/903 (41%), Positives = 552/903 (61%), Gaps = 88/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    +  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQHTPNVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L D+ KDT+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  NP++    LM+II GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+TS  +++IV+ EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKSDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R A+  V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ ++  ++ ++
Sbjct: 303 IVIELRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQPKVLSLKQCLEYYLEHQKVII 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+          
Sbjct: 363 RRRTAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I +E   L   I E   
Sbjct: 413 ----------------NYSLSEKQAQAILDMRLQRLTGLEREKIEDEYKGLVDLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ +K+  +  RRT IV  G+  +EDED I  E++V+T++H GY+
Sbjct: 457 ILADNEKVLEIIREELIEIKERFNDTRRTEIVTAGIETIEDEDLIPVENIVITLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YR+Q+RGGKG  G+   ++DFV  L   STH ++LFFS+ G VY+ K + +P 
Sbjct: 517 KRLPASTYRSQKRGGKGVQGMGTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L + +GE I  I+P  E +    N Y+ F T+HG  +R  LS F  I
Sbjct: 577 FGRTAKGIPIINLLEVEKGEWINAIIPVSEFD---ENSYLFFTTRHGVSKRTTLSQFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E  I++ TK G  +RF  + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALSLRDEDELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREM-GRTAAGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++ D V+ M                                                  
Sbjct: 693 LSEDDIVVGM-------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP-- 846
              E+   +  +L V+E+G+GK T   ++R+  R GKG++   ++  N  G LV V    
Sbjct: 703 ---EILEPDANVLIVTERGYGKLTPEKEYRVQTRGGKGLKTCKITDNN--GPLVTVKATN 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
               + +++++  G +IR+ V++I    R T+GV +     +E V +V  + +S+  DE 
Sbjct: 758 AEAEEDLMIITGSGVIIRMAVSDISTTGRVTQGVRLIRLGDEEHVATVALVEQSQEDDED 817

Query: 907 EST 909
              
Sbjct: 818 NEE 820


>gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
 gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14]
          Length = 890

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/907 (43%), Positives = 564/907 (62%), Gaps = 88/907 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E      Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDETISTMIAVKDLE--SEEHYLVFATKRGIVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RFP SA+R   GR + GV+GI
Sbjct: 635 INKNGKIAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+ + +                                               
Sbjct: 694 TLREGDVVVGLDVAH--------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 709 ------AESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE----IV 903
              + +++V++ G +IR+ V +I    RA +GV +    + + V +V +++E E      
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADS 820

Query: 904 DEAESTE 910
           D+ +++E
Sbjct: 821 DDTDASE 827


>gi|146329479|ref|YP_001209241.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232949|gb|ABQ13927.1| DNA gyrase subunit A [Dichelobacter nodosus VCS1703A]
          Length = 861

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/895 (44%), Positives = 556/895 (62%), Gaps = 68/895 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  V++ DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+LF M + G  WNKK
Sbjct: 3   DFAREIVPVNLIDEMRSSYLDYAMSVIIGRALPDARDGLKPVHRRVLFSMHKQGNAWNKK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A I G+VMGKYHPHG++AIYD L RMAQ +S+R +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YSKSATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSMRYVLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL D+ K+TVDF PNYDGS +EP VL    PN+LVNG  GIAVGMATNI
Sbjct: 123 TESRMAKIAHSLLTDIEKETVDFMPNYDGSQEEPTVLPTLIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGE +D  + ++D+P+  +  LM  + GPDFPTGA+I G  GI  AY TG+G I I
Sbjct: 183 PPHHLGETLDAVLFLMDHPEATVSDLMHYLPGPDFPTGALINGTKGIYEAYETGKGRIYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +HIE      ++ IVV E+PYQVNKA +L KIAELV++K+I  I  LRDESD+ G R
Sbjct: 243 RAKTHIETDEHHGKQTIVVDELPYQVNKAVLLAKIAELVKDKKIDGITALRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++RG  A+VILNQL++ T LQ+ FSVNMVAL G +P+   L  +L  F+A R EVV
Sbjct: 303 MVIEVRRGEVAEVILNQLFQQTQLQTTFSVNMVALVGGQPKLLGLKSLLNVFIAHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAH+L GLA+A++N+D+++ +I+ +  P  A+  L+ ++W A  +  
Sbjct: 363 TRRTIYELRKARERAHILEGLAVALSNIDDIISVIKSAAEPAKAKELLLSQAWLAEHVAV 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++      +              G  YLS  Q +AIL+LRL RLTGL ++ I  E  S+ 
Sbjct: 423 MLAHAGAENSRPEQLAEEYGLHAGGYYLSPEQAQAILDLRLHRLTGLEQEKIIEEYQSII 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I+  L IL    RL+ +IK+ELL++K + +  R T I++  LD+  ED I  ED V+T
Sbjct: 483 RDIEGFLAILHIPERLVAVIKEELLAIKAQFNDQRCTHILDTHLDLSMEDLIAEEDRVIT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY+K  PLS Y AQRRGGKG+S   ++D+DFV  LFI +TH ++L FS+ G VY  
Sbjct: 543 LSHEGYIKAQPLSDYEAQRRGGKGKSVTAIKDQDFVEQLFIANTHDTMLCFSNKGKVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP  S  A+GK ++N+L     ER+  I+   E      +LY+ FAT++G V++  
Sbjct: 603 KVYELPHASRNAKGKPIVNLLPFEADERLNAILTTREYP---EDLYLFFATQNGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS++ +   +G IA+ L   D+++ VE    E +I+L +  G+ VRF    +R   GR +
Sbjct: 660 LSEYSRPRANGIIAINLRDDDQLVDVELTNGERNIMLFSNAGKAVRFSEETVRSM-GRAA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L  G +VI++ ++                                        
Sbjct: 719 GGVRGMRLEAGQKVIALCVLKDQGD----------------------------------- 743

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             ILT++E G+GKRT + D+    R  KG+ +   S+ N  G  
Sbjct: 744 ------------------ILTITENGYGKRTPTADYPQKGRGTKGVISIMCSERN--GNA 783

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V    V +++ I+LV+D GTL+R  V EI  + R T+GV +  TA+ E+V++  +
Sbjct: 784 VYAIQVCEDEDIMLVTDNGTLVRTRVCEISTSGRNTQGVRLIRTAESEKVIAAAK 838


>gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354]
          Length = 941

 Score =  889 bits (2296), Expect = 0.0,   Method: Composition-based stats.
 Identities = 435/928 (46%), Positives = 613/928 (66%), Gaps = 35/928 (3%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++   + +          + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF 
Sbjct: 1   MSDETDTLTPPSPMGEYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
             + G    + Y K A+I G+VMG YHPHG++AIYDALARM Q WS+R+ LI+GQGNFGS
Sbjct: 61  SQEGGFVAGRPYRKSAKIVGDVMGNYHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D DPPA+ RYTE RL+K A+ LLDDL KDTVDF  NYDGS +EP VL A +PN+LVNG 
Sbjct: 121 MDPDPPASMRYTEARLEKVANALLDDLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           GGIAVGMATNIP HNLGEV+DGC+A I NP I  + L+E I GPDFPT  +ILG++G ++
Sbjct: 181 GGIAVGMATNIPPHNLGEVIDGCLAFIANPAITSEELIEYIPGPDFPTAPLILGQSGARS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI++R    +E    DR+ IV+T IPYQV K  ++EKIAE  ++KRI  I+D+
Sbjct: 241 AYLTGRGSIMMRARHEVETGRNDRQSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES R+G RVV++LKR AS +V+LNQL+RY+  Q+ F  NM+A+ G +PE   L  I++
Sbjct: 301 RDESSREGVRVVVDLKRDASPEVVLNQLWRYSPAQASFPANMLAIRGGRPEVLALRDIIQ 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF++FRE+V+ RRTK+ LNKARDRAH+L+GL +AV+N+DEVV IIR + NP  AR +L++
Sbjct: 361 AFISFREQVITRRTKFELNKARDRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLR 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           + W   DI   I L++    +     GT  LSE Q +AIL+LRL RLT LGRD+I +EL 
Sbjct: 421 KEWPIGDIAQYIALVEAIEPSSDEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELK 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I+  L IL+ R +L  ++++EL +++D+  TPR + I      ++DED I +EDM
Sbjct: 481 ELATKIEYYLSILADRRKLYQVMREELQAIRDQYATPRMSEIAPAWDGVDDEDLIEQEDM 540

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVTV+H GY+KR PL  +RAQ RGGKGRS +  +DED V ++F+ STH  VLFF++ G V
Sbjct: 541 VVTVTHGGYIKRTPLHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRV 600

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ KVW+LP GSP  +G+ ++N+L L + ER+T ++P P+DE+ W+ L +VFAT+ G VR
Sbjct: 601 YRLKVWKLPEGSPTTKGRPMVNLLPLGEDERVTNVLPLPQDEAEWSKLNIVFATEQGMVR 660

Query: 659 RNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           RN +  F +I  +GK AM    DS D ++ V    ++ +I L +  G+ +RF  +  R  
Sbjct: 661 RNSMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFAATDARET 720

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R  +GVRG+ L +GD+V+S+A++     D + R  Y++    +               
Sbjct: 721 KSRTGIGVRGMKLKEGDKVVSLAVLHPLSHDMETREAYLRGAVWK--------------- 765

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKI 835
            ++  +  +  E  QE++  E+FILT++  G+GK +S+Y++R   R G+GI    + S  
Sbjct: 766 -NNDTDHTLDTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDS 824

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-------------EIRIASRATKGVVI 882
              G +VA FPV    Q++LV+D+  LIR+P++                I  R + GV +
Sbjct: 825 KRNGPVVASFPVRHGMQLMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKV 884

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
           F  AK E++V   RI E +   E E+ E
Sbjct: 885 FDVAKGEQIVGAARIDE-DADPENEAEE 911



 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 84/287 (29%), Gaps = 47/287 (16%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G V+R  +  +      GK   G V    D +  + +++    +   S  G   +  
Sbjct: 654 TEQGMVRRNSMDAFTRIPSNGKYAMGFVEDSGDRLIGVRLLNEDQEIFLASDAGKAIRFA 713

Query: 603 VWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPEDE--------------- 640
                        G    + K    ++SL     ++  M   E                 
Sbjct: 714 ATDARETKSRTGIGVRGMKLKEGDKVVSLAVLHPLSHDMETREAYLRGAVWKNNDTDHTL 773

Query: 641 -------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL------DSRDEILSV 687
                     N  +++  T +G  + +   ++  I R G+    +           +++ 
Sbjct: 774 DTELAQEMEENEEFILTLTANGYGKISSAYEYRTIGRGGQGITNIGEPSDSKRNGPVVAS 833

Query: 688 ETCTQENDILLTTKLGQCVRFPIS------------AIRVFAGRNSVGVRGISLAKGDQV 735
                   ++L T   + +R PI                   GR S GV+   +AKG+Q+
Sbjct: 834 FPVRHGMQLMLVTDQAKLIRLPIDFRHLIPDGFVNHKGWSIYGRGSSGVKVFDVAKGEQI 893

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           +  A +       +E    +      R   +          + +  +
Sbjct: 894 VGAARIDEDADPENEAEEAIMDERMAREDQTTSPHTTLDRDDPTPTD 940


>gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909]
          Length = 893

 Score =  888 bits (2295), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/902 (43%), Positives = 559/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +                                               
Sbjct: 694 SLREGDNVVDLDVADS-------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    RA +GV +      + V +V +++E +  +E  
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENV 820

Query: 908 ST 909
             
Sbjct: 821 DE 822


>gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
 gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE]
 gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter
           baumannii AYE]
          Length = 904

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 548/900 (60%), Gaps = 48/900 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D D                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 TDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVER 896
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E    VVS+E 
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIEA 872



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/436 (13%), Positives = 142/436 (32%), Gaps = 40/436 (9%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +  A     L         +               +++Q+  +A   + +   +D 
Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDF 531

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
               +  +  + L+  QT       L+      R    ++  +    +  + L + S+ +
Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHA 591

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L       +      + P+ +R  +G   +        E +   +             
Sbjct: 592 TVLCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFPENHYVFM 651

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ FS+ G   + 
Sbjct: 652 ATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709

Query: 602 KVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTIMPFPEDESS 642
               +      A+G   +                        +     + +         
Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLVSRIVSLVVV 769

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699
                V+ A+ +G  +R  ++DF    R   G IA+K      E++   +  +  ++LL 
Sbjct: 770 PETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSIDETKELLLI 829

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + +     +    
Sbjct: 830 SDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEELLEGEVDTTE 888

Query: 760 AQRRLISGDTEEITSL 775
                   + E+ +  
Sbjct: 889 TDSEEAVSNNEDTSEE 904


>gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
 gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21]
          Length = 946

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 445/929 (47%), Positives = 611/929 (65%), Gaps = 36/929 (3%)

Query: 1   MTEH--IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +    I +     +  T + I +EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+
Sbjct: 1   MADDIDTIDTPVPGGEEHTRIDIVEEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
              + G    + + K A+I G+VMG YHPHG+AAIYDALARM Q+WSLR+ LI+GQGNFG
Sbjct: 61  ASNEGGFVAGRPFRKSAKIVGDVMGNYHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+D DPPA+ RYTE RL + A+ LLDDL KDTVDF  NYDGS +EP VL AR+PN+LVNG
Sbjct: 121 SMDPDPPASMRYTEARLARVANSLLDDLDKDTVDFADNYDGSRREPTVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
            GGIAVGMATNIP HNLGEV+DGC A +DNP I  + L EII GPDFPT  +ILG+TG +
Sbjct: 181 AGGIAVGMATNIPPHNLGEVIDGCFAYMDNPAITNEELFEIIPGPDFPTAPLILGKTGAR 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSI+ R    IE+  GDR+ IV+T IP+QV K+ ++EKIAE  ++KRI  I+D
Sbjct: 241 AAYTTGRGSILQRARHEIEERRGDRKSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDES RQG RVV++LKR ASA+V+LNQ++RYT  QS F  NM+A++G +PE  TL   +
Sbjct: 301 IRDESSRQGVRVVVDLKRDASAEVVLNQIWRYTPAQSSFPANMLAISGGRPEVLTLREFI 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+ FREEV+ RRTKY LNKARDRAH+L+GL +AV+NLDEVV +IR +P P  AR  L+
Sbjct: 361 QAFITFREEVITRRTKYELNKARDRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLL 420

Query: 419 QRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            + W   DI   I L++        + GT  LSE Q +AIL+LRL RLT LGRD+I +EL
Sbjct: 421 AKEWPIGDIAQYIALVEAIEPSDEQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGDEL 480

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L + I+E L IL+ R +L G+++ EL  ++    TPR + I      ++DED I RE+
Sbjct: 481 KLLSLSIEEYLSILADRVKLYGVMRGELEEIRAAYATPRVSEIAPAWDGIDDEDLIEREE 540

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTV+H GY+KR PL  +RAQ RGGKGRSG+  +DED V +LF+ STH  VLFF++ G 
Sbjct: 541 MVVTVTHGGYIKRTPLDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGR 600

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ KVW+LP G PQ +G+ ++N+L L   ER+T ++  PEDE+ W  L +VFAT+ G V
Sbjct: 601 VYRMKVWKLPEGGPQTKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMV 660

Query: 658 RRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           RRN +  F  +  +GK AM    DS D ++ VE  T++ +I L +  G+ +RF  +  R 
Sbjct: 661 RRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARE 720

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R  +GVRG+ L +G +V+SMA++   + D + R  Y++    +              
Sbjct: 721 TKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLRAAEWK-------------- 766

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV--S 833
             ++  +  +  E+ +E+   E+FILT++ +G+GK +S+Y++R   R G G+       S
Sbjct: 767 --NNENDYTLDAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSS 824

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-------------EIRIASRATKGV 880
             +  G +VA FPV    Q++LV+D+  LIR+P+N                I+ R + GV
Sbjct: 825 NPDRNGTVVASFPVKHGSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGV 884

Query: 881 VIFSTAKDERVVSVERIRESEIVDEAEST 909
            IF+ AK E++V    I E+E  +     
Sbjct: 885 RIFNVAKGEQIVGAALIDETEEPENQAEE 913



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 48/290 (16%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G V+R  +  +      GK   G V    D +  + +++    +   S  G   +  
Sbjct: 655 TEQGMVRRNSMDAFTNVPSNGKYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFS 714

Query: 603 VWRLPI----------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL------ 646
                           G     G+ ++++  L+ GER T +       + W N       
Sbjct: 715 ATDARETKSRTGIGVRGMKLKEGQKVVSMAVLDAGERDTEVREAYLRAAEWKNNENDYTL 774

Query: 647 -------------YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-------LS 686
                        +++  T  G  + +   ++  I R G     +             ++
Sbjct: 775 DAEKVEEMAEAEEFILTLTSRGYGKISSAYEYRTIGRGGMGLTNIGEPSSNPDRNGTVVA 834

Query: 687 VETCTQENDILLTTKLGQCVRFPIS------------AIRVFAGRNSVGVRGISLAKGDQ 734
                  + ++L T   + +R PI+                 +GR S GVR  ++AKG+Q
Sbjct: 835 SFPVKHGSQLMLVTDQAKLIRLPINFRYLLENGFENHEGYSISGRGSSGVRIFNVAKGEQ 894

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           ++  A++   +   ++    ++   A R  ++      T+  + +  +  
Sbjct: 895 IVGAALIDETEEPENQAEELVQDEIAARGGLNKTEPYTTAHSDKNIEDEP 944


>gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
 gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87]
          Length = 891

 Score =  888 bits (2294), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/907 (43%), Positives = 564/907 (62%), Gaps = 88/907 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 64  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 184 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 244 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 304 RIVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 364 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 416 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 458 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 518 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E      Y+VFATK G V+R+ LS+F +
Sbjct: 578 ELSRQSKGIPVVNAIELENDETISTMIAVKDLE--SEEHYLVFATKRGIVKRSALSNFSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RFP SA+R   GR + GV+GI
Sbjct: 636 INKNGKIAIGFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+ + +                                               
Sbjct: 695 TLREGDVVVGLDVAH--------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 ------AESEDEVLVVTENGYGKRTPVDEYRLSNRGGKGIKTATITERN--GNIVCITTV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE----IV 903
              + +++V++ G +IR+ V +I    RA +GV +    + + V +V +++E E      
Sbjct: 762 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMRLGEGQFVSTVAKVKEEEDNQADA 821

Query: 904 DEAESTE 910
           D+ +++E
Sbjct: 822 DDTDASE 828


>gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435]
 gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus
           haemolyticus JCSC1435]
          Length = 899

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/902 (43%), Positives = 556/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y
Sbjct: 5   PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGKYHPHG+ +IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +  NPD+ +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R
Sbjct: 185 PHNLTEVINGVLHLSKNPDVTIAELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
             + IE+  G R++IVVT+IPYQVNKA M+EKIAELVREK+I  I DLRDE+  R G RV
Sbjct: 245 ARAEIEERGGGRQRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++++ A+A+VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ VV 
Sbjct: 305 VIDVRKDANANVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKQALVEYLEHQKTVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R          
Sbjct: 365 RRTEYNLKKAKDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQER---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL RLTGL RD I NE N L   I E  +I
Sbjct: 415 ----------------FKLSERQAQAILDMRLRRLTGLERDKIENEYNELLGYISELEEI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y+K
Sbjct: 459 LADDEVLLQLVRDELTDIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  
Sbjct: 519 RLPVSTYRSQHRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q++G  +IN + L+  E I+T++     E    + Y+VFATK+G V+R+ LS+F  IN
Sbjct: 579 SRQSKGIPVINAIELDNDETISTMIAVRNLE--DEDSYLVFATKNGIVKRSALSNFSHIN 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++GKIA+     DE+++V       DIL+ T     +RF  +++R   GR + GVRGISL
Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGNQDILIGTSHASLIRFAETSLRPL-GRTAAGVRGISL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+ + +                                                 
Sbjct: 696 REDDVVVGLDVAH----------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  VN 
Sbjct: 709 ----ADSEDGVLVVTENGYGKRTPVSEYRLSNRGGKGIKTAKITERN--GNIVCITTVNG 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRESEIVDEAES 908
            + +++V++ G +IR+ V +I    RAT+GV +     D+ V +V + I ++E  D  E+
Sbjct: 763 EEDLMIVTNSGVIIRLEVEDISQNGRATQGVRLMKLGDDQFVSTVAKVIDKTEDEDATEA 822

Query: 909 TE 910
            +
Sbjct: 823 AQ 824


>gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
 gi|294837788|ref|ZP_06782471.1| DNA gyrase, A subunit [Acinetobacter sp. 6013113]
 gi|294858569|ref|ZP_06796338.1| DNA gyrase, A subunit [Acinetobacter sp. 6013150]
 gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058]
 gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294]
          Length = 904

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 548/900 (60%), Gaps = 48/900 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DNP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L+   W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+G+I++EL  V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMGVIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLKVFEVPQASRGAKGRPIVNLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A    ++ D D                     + +   +DS
Sbjct: 720 TAKGVRGMR-------VSFASSTLSEEDADV------------------ENDDSDDNDDS 754

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 755 TDSSLVSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER---VVSVER 896
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +++E    VVS+E 
Sbjct: 813 ELVGAVSIDETKELLLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSIEA 872



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +     + +
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSTDSSLV 760

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 761 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 820

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 821 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 879

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +            + E+ +  
Sbjct: 880 LEGEVDTTETDSEEAVSNNEDTSEE 904


>gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/897 (40%), Positives = 555/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  +  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D     + Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKD--QTADHYLFFATRQGIVKRTNVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R   GR + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                                                 
Sbjct: 693 EGDHLVGATIVSD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L +SE G+GKRT + ++    R GKGI    V+  N  G L  +  V  +
Sbjct: 706 ------DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  +  I    R+T GV +    ++ ++++   +  ++  ++ E
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALVDAADQKEQEE 814


>gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 817

 Score =  887 bits (2293), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/870 (44%), Positives = 554/870 (63%), Gaps = 68/870 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +E++VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ I     A                                       
Sbjct: 723 GIKLAGDDKVVSLIIPRGEGA--------------------------------------- 743

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V   
Sbjct: 744 --------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAV 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            V+D DQI++++D GTL+R  V+EI +  R
Sbjct: 788 QVDDCDQIMMITDAGTLVRTRVSEISVVGR 817



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 13/236 (5%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    R+   A   D   E    +  +QEN ++  +  G     P++       R  
Sbjct: 510 RDQFGDERRTEITANSADINIE----DLISQENVVVTLSHQGYVKYQPLTDYEA-QRRGG 564

Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G     + + D +  + +    D           Y   +        G           
Sbjct: 565 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP 624

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 I+         +   +   +  G  K+T+  +F     +  GI A ++   N+ 
Sbjct: 625 LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNL---NDG 679

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L+ V   + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 680 DELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 735



 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 12/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   L+D+    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 540 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 599

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
               +  +   A R + G   V  + L   +++ +  I+   + +    +         +
Sbjct: 600 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITA--ILPVREYEEGVNVFMATASGTVK 656

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +    +     S    +    +  E    +L      ++  S  G   R      R   R
Sbjct: 657 KTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGR 716

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +  G+R   ++       +V++        I+ V+  G   R   +E    SRAT+GV+ 
Sbjct: 717 TATGVRGIKLA---GDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVIS 773

Query: 883 FSTAK-DERVVSVERIRESEIV 903
               + +  VV   ++ + + +
Sbjct: 774 IKVTERNGSVVGAVQVDDCDQI 795



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       +    +  + +  N ++   ++L  +E  +
Sbjct: 481 LLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQENVV 540

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 541 VTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 597

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            L  + V ++  ASR  +G   V +     +ER+ ++  +RE E 
Sbjct: 598 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 642


>gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
 gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE]
          Length = 812

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/894 (42%), Positives = 554/894 (61%), Gaps = 87/894 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+GM ++G  ++K Y 
Sbjct: 4   QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMGKYHPHG+ AIYD + RM QD+SLR  LI+GQGNFGSVDGD  AA RYTE
Sbjct: 64  KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +LDDL K+TV+F PN+D S +EP VL A+ PN+L+NG  GIAVGMATNIP 
Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG VA+I++P I+   L+++I GPDFPTGA I GR GIK+AY TGRGSI IR 
Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIYGREGIKDAYLTGRGSIKIRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I +  G R  I+VTEIPY VNKA ++E IA+LVR+K++  I+DLRDESDR G R+VI
Sbjct: 244 KAEITE-EGGRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+GA+A+V+LNQLYR+T +++ F VN +AL   +P   +L   L+ ++  R+EVV RR
Sbjct: 303 ELKKGANANVLLNQLYRHTQMETTFGVNNLALVDNQPRTLSLKETLEYYLKHRQEVVTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L KA+ R H+L GL +A+ N+D+ V I+R S + + A+   M +            
Sbjct: 363 SQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSK------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q++AIL++RL  LTGL R  I +E   L   I    ++L+
Sbjct: 411 --------------YGLSEEQSKAILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLA 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L IIK ELL ++ +    RRT I E   ++ DED I  E++VVT+S+ GY+KR P
Sbjct: 457 SPQMVLDIIKNELLELRAKYGDGRRTIIKESDGEIVDEDLIPVENVVVTISNTGYIKRQP 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  YR QRRGG G  G+  ++EDFV D+F  STH  +LFF++ G VY  KV+ +P  S Q
Sbjct: 517 VDTYRTQRRGGMGIMGMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQ 576

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGKA++N+L+L   E +  ++P  E +      Y++  T+ G +++  LS F  I R+G
Sbjct: 577 SRGKAIVNLLTLMPNESVNAMIPIKEFD---EKHYLIMCTREGTIKKTALSSFQNIRRTG 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  DE++SV+      ++L+ T+ G+  RF  S +R   GR + GV GI L + 
Sbjct: 634 IIAIGLDEGDELISVKLTNGGQEVLIATRNGKANRFSESEVRPM-GRQAGGVIGIRLTEK 692

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M +V  + +                                              
Sbjct: 693 DKVIGMEVVSESAS---------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ILTV E GFGKRT+  ++   +R G+G+     +  N  G +VA+  V D+DQ
Sbjct: 707 -------ILTVCENGFGKRTAISEYTPHHRGGQGMINIKTTLRN--GGVVAIASVTDDDQ 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDE 905
           +++V+  G ++R+ V +I   SR T+GV I +   +++ VV V ++   +  +E
Sbjct: 758 LLVVTRDGIMMRINVKDISEISRNTQGVKIITLKSENDAVVGVAKLVSEKKEEE 811


>gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/902 (43%), Positives = 557/902 (61%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  ++LG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KARDRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELTEIKERFGDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   DEDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + ES  +  Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLESEED--YLVFATKQGIVKRSSLSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RF  S +R   GR + GV+GI
Sbjct: 635 INKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL +GD V+ + +                                               
Sbjct: 694 SLREGDTVVGLDVADS-------------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 710 -------ESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V++I    RA +GV +      + V +V ++ E +  +E  
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENA 820

Query: 908 ST 909
             
Sbjct: 821 DE 822


>gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489]
 gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489]
          Length = 851

 Score =  887 bits (2292), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/902 (42%), Positives = 556/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D S +EP VL AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA IDN DI++D L+  I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE IVVTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKATFEEVQ-GRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN L++YT+LQ+ FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGRPQLLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  L++R           
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I +  DIL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R + IIK ELL VK++    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ANEERRMQIIKDELLEVKEKYGDERRSEINFAGGDLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNSHYVIMATKKGTVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + I L  K G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 LNGINAIGIKEGDELLEAKLTTGTSQIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V + D D                                         
Sbjct: 695 ADDNDEVVGMVSVHNFDDD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+RI+NR GKG++   V+  ++ G LVA+  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVT--DKTGGLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D+D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ + E   + E 
Sbjct: 761 DSDDLMIINKSGIAIRMGVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDEEG 820

Query: 909 TE 910
            E
Sbjct: 821 LE 822


>gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 910

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/899 (41%), Positives = 540/899 (60%), Gaps = 46/899 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+DE++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGS-------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                  D    LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDGRRTEIVESGVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+ +G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVLCFTDVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ +IN+L L+  E +T I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPIINLLPLDANETVTAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L+ F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+                           +   +A     +    + +   +DS
Sbjct: 720 TAKGVRGMR--------------------------VTLAAAVDSEDADLDNDDSDDNDDS 753

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S    +S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 754 SDSNVLSRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--G 811

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV    +++  +++L+SD GTL+R    E+ +  R  +GV +   +  E +V V  I 
Sbjct: 812 ELVGAVSIDETKELMLISDGGTLVRTRAAEVAMTGRNAQGVRLIRLSDAETLVGVVSID 870



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 97/270 (35%), Gaps = 24/270 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L+ +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 643 FPENHYVFMATASGTVKRVELAQFSNIRANG--LRAIELNEEDTLIGVAITDGNQQIMLF 700

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN------------------ILSLNQGERITTIM 634
           S+ G   +     +      A+G   +                       +       + 
Sbjct: 701 SNEGKAIRFAETDVRAMGRTAKGVRGMRVTLAAAVDSEDADLDNDDSDDNDDSSDSNVLS 760

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCT 691
                        V+ A+ +G  +R  ++DF    R   G IA+K      E++   +  
Sbjct: 761 RIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSID 820

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           +  +++L +  G  VR   + +    GRN+ GVR I L+  + ++ +  +   + + ++ 
Sbjct: 821 ETKELMLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSDAETLVGVVSIDAVEVEDEDE 879

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +  ++ +       +   E     K+D+  
Sbjct: 880 LELIEGVENPEAQTATSEEVAVEPKDDTPE 909


>gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius]
          Length = 882

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/902 (42%), Positives = 561/902 (62%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G RE+IVVTEIP+QVNKA M+EKIA+LVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I   G+  +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDERRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   ++DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLEDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     +  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGDKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNKDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +     ++ V +V ++++     E++
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESD 820

Query: 908 ST 909
             
Sbjct: 821 ED 822



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/267 (19%), Positives = 94/267 (35%), Gaps = 13/267 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +      +L
Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGDKHIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++   + + K   +   S  A G   I         R    +   +     N   ++ 
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIAAGVKGI-------RLRDGDEVIGLDVADDDNKDEILV 717

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + D+        G    KL      ++ + T   + D+++ T  G  +R
Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S I    GR + GVR I L     V ++A V     D +          +     + 
Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDDEQYVSTVAKVKKEPEDLESDEDTGVSEVSDVADDAT 836

Query: 768 DTEEITSLKNDSSVEGNISEERCQELK 794
           +     +   D+        E   E +
Sbjct: 837 EVVVDDATPGDTIHTEAPEPEASPERE 863


>gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
 gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens
           NRL30031/H210]
          Length = 923

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 549/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D+P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDDPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  I+D
Sbjct: 241 YKTGRGRVVMRGTTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAITLKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I          D +     +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890


>gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10]
 gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10]
          Length = 835

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/888 (42%), Positives = 550/888 (61%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++++  +T ++I+ EM+ S++ YA++VI+ RA+PD+RDG+KPVHRRIL+ M ++G+  +K
Sbjct: 3   DQDQSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +A+  NP+I ++ LME I GPDFPTGA I+G +GI+ AY TG+GSI+
Sbjct: 183 IPPHNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIVGISGIRRAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +G    I+V E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 IRSNARIEDHNGKPW-IIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +A+V+LN LY+ T+LQ+ F +N +AL   +P+   L   L  ++  +  V+
Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGRPQVLNLKETLVHYLDHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL +A+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 362 RRRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I NE N L   I E   
Sbjct: 413 -----------------FDLSHDQAQAILDMRLQRLTGLERDKIENEYNELMARIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++ELL ++D     RRT I  G   MEDED I R+++V+TVSH GY+K
Sbjct: 456 ILADDEKVLEIIREELLEIRDRFGDDRRTTITFGEDSMEDEDLIPRQNVVITVSHHGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+Q+RGG+G  G+   DEDFV  LF+ ++H  +LFF++ G VY+ K + +P  
Sbjct: 516 RIPVSTYRSQKRGGRGVQGMGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQ 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ++G  +IN+L + + E I+T++P  E +    N  ++F TK+G  +R +L  F  I 
Sbjct: 576 KRTSKGIPIINLLQIEKDEYISTVIPISEFD---ANHSLIFMTKYGVSKRTELDAFKNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G  A+KL   DE+  V       ++++ TK G  +RF  + +R+  GR + GV+G+ L
Sbjct: 633 KGGLFAIKLREGDELHGVRLTDGSKELVVGTKKGMSIRFSETDVRLM-GRTATGVKGLRL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+ M I+                                                
Sbjct: 692 QSEDEVVGMDIIEPDSD------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL V+E GFGKRT   ++R  +R GKGI+  +++  N  G LV++  V  
Sbjct: 709 ----------ILIVTENGFGKRTPIDEYRQQSRGGKGIKTCNITDKN--GQLVSLKVVGS 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  +++++  G LIR+ V++I   SR T+GV +     +E V +V R+
Sbjct: 757 DHDLMMITTNGVLIRIHVSDISKTSRNTQGVRLIRLGDEEFVSTVARV 804


>gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1]
 gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2]
          Length = 827

 Score =  887 bits (2291), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 554/905 (61%), Gaps = 90/905 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +      +  + +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    
Sbjct: 2   DENTIFDKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL EV++  + +IDN      +  ++ L+EII+GPDFPTGA ILGR+GI  AY 
Sbjct: 182 TNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V+ IE  +  +++I+VTE+PY VNKA ++EKIA LVREK++  I +LRDE
Sbjct: 242 TGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+ IEL+R A+A+VILNQLY++T LQ  F V M+AL   +P+   L  +L  ++
Sbjct: 302 SDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +++VV RRT+Y LNKA +RAH+L GL IA  N+DEV++IIR + N + A+ ELM+R  
Sbjct: 362 THQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELMER-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q +AI+++RL  L GL R  +  E   L  
Sbjct: 420 ------------------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELME 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   IL+   +LLG+IK E+  ++D+    RRT+I   + D+  ED I RE+ V+T+
Sbjct: 456 RIGELKAILADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITM 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LGY+KR+ +  +++Q RGGKG  G+   DED++ +LF+ +TH  ++FF++ G VY+ K
Sbjct: 516 TKLGYIKRMTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     ARG A++N+L L  GE+IT ++P  + E      Y++ ATK+G V+++ +
Sbjct: 576 AYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYE---EGKYLLMATKYGVVKKSSI 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            ++  I ++G  A+ L   D+++ V+    + D+ L TK GQC+RF  S +R   GR S+
Sbjct: 633 MEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+L   D+VI M +    +A                                    
Sbjct: 692 GVRGINLTGDDEVIGMQLDSQGEA------------------------------------ 715

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L VS  G GKRT + +F   +R GKGI+   +++  + G +V
Sbjct: 716 -----------------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVV 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            V  VND+++I++++ +G +IR  V+ I I  R T GV + +  ++  V S+ ++RE ++
Sbjct: 757 GVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKL 816

Query: 903 VDEAE 907
            DE E
Sbjct: 817 EDEME 821


>gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 911

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/921 (40%), Positives = 557/921 (60%), Gaps = 35/921 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  I   D++  K   +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSSEI---DQQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +S+R +L++GQGNFGSV
Sbjct: 58  HELKNNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ +DTV+F  NYDGS +EP+VL  R+P +LVNG  
Sbjct: 118 DGDAAAAMRYTEIRMAKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSE 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNL + + GC+ ++  P+ D++ L++II+ PDFPTGA I G TGI+  
Sbjct: 178 GIAVGMATSIPPHNLRDTLSGCLKLLREPETDINDLIDIIKAPDFPTGATIYGLTGIRAG 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG +VIR  +HIE    + E I+V EIPYQVNK+ ++EKI EL+REK +  IA+LR
Sbjct: 238 YQTGRGRVVIRSKTHIEPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+VIELKR  +A+VILNQLY+ T LQ  FS+NMVAL   +P    L  IL  
Sbjct: 298 DESDKDGTRIVIELKRNENAEVILNQLYKLTQLQDSFSINMVALVDGQPRLLNLKQILSE 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R EVV RRT Y L KAR   H+  G A+A++N+DE++ +I+ S + ++AR  L+ R
Sbjct: 358 FLRHRREVVTRRTLYRLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSR 417

Query: 421 SWNASDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +W +  + ++++  D                      +LS+ Q RAIL + L  LTGL +
Sbjct: 418 AWQSDLVSEMLNRSDLDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQ 477

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMED 529
           D+I  E   L   I + LDIL+   R+  II  EL++++ +    RR+ I      D+ D
Sbjct: 478 DEIIKEYKELMAIIVDLLDILAKPERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIAD 537

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I   +MVVT++H GY+K  P S Y+AQ+RGG+G+     +DEDF+  LF+ +TH  +
Sbjct: 538 EDLIPPREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYL 597

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F++LG  +  KV+RLP G  Q+RG+ + N++ L + E+++ I+P  +      + YV 
Sbjct: 598 MCFTNLGRCHWIKVYRLPEGGRQSRGRPINNVIQLEENEKVSAILPVRDFP---EDEYVF 654

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           FAT  G V++ +LS F  ++  G  A+ L   D ++ V   +  +DI+L + LG+ +RF 
Sbjct: 655 FATALGVVKKVQLSAFKNVSVKGIKAIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRFN 714

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                 F    S      +     + +S ++   +D +  +    + +   +        
Sbjct: 715 E-----FYNPTS------NDDDESEDVSGSLNDDSDDENSDEFNLLTNKGIRPSGRGSGG 763

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                L  +  +   +  E   +L+     +LT ++ G+GKRT   ++    + G+GI A
Sbjct: 764 LRGMRLPENGRIVSLLVAELGSDLQ-----VLTATQNGYGKRTPIENYSRKGKGGQGIIA 818

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            D  + N  G LV    V+ +D ++L++  G LIR  V ++R   RA +GV + +  +  
Sbjct: 819 IDTGERN--GELVGAALVSPSDDLMLITSGGVLIRTKVEQVRETGRAAQGVRLINLDEGT 876

Query: 890 RVVSVERIRESEIVDEAESTE 910
            +VS+ER+ E    +EAE  E
Sbjct: 877 TLVSIERVAEENSDEEAELVE 897



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 60/466 (12%), Positives = 157/466 (33%), Gaps = 71/466 (15%)

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
                +++  +   + R         D+  ++      +A + +++ I+        A+ 
Sbjct: 450 QSDGYWLSDEQARAILRMSLRNLTGLDQDEIIKEYKELMAIIVDLLDIL--------AKP 501

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           E +++  +   +       D+    I + G   +++       E+ +    G        
Sbjct: 502 ERVRQIIDDELVAMQTQFGDERRSEINTFGGGDIADEDLIPPREMVVTLTHGGYIKTRPT 561

Query: 476 ELNSLGIE--IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-------------- 519
                       +          +  +                R                
Sbjct: 562 SDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGRCHWIKVYRLPEGGRQS 621

Query: 520 ----IVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
               I   +   E+E             ++ V   + LG VK+V LS ++      KG  
Sbjct: 622 RGRPINNVIQLEENEKVSAILPVRDFPEDEYVFFATALGVVKKVQLSAFK--NVSVKGIK 679

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            + ++D D +  +   S  + ++ FS+LG   +   +  P  +     + +   L+ +  
Sbjct: 680 AIALKDGDSLVGVAKTSGSSDIMLFSNLGKAIRFNEFYNPTSNDDDESEDVSGSLNDDSD 739

Query: 628 ERITTIMPFPEDESSW-----------------------------NNLYVVFATKHGNVR 658
           +  +       ++                                ++L V+ AT++G  +
Sbjct: 740 DENSDEFNLLTNKGIRPSGRGSGGLRGMRLPENGRIVSLLVAELGSDLQVLTATQNGYGK 799

Query: 659 RNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  + ++ +  + G+  + +D+ +   E++     +  +D++L T  G  +R  +  +R 
Sbjct: 800 RTPIENYSRKGKGGQGIIAIDTGERNGELVGAALVSPSDDLMLITSGGVLIRTKVEQVRE 859

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             GR + GVR I+L +G  ++S+  V   ++D +  +  +   +++
Sbjct: 860 -TGRAAQGVRLINLDEGTTLVSIERVAEENSDEEAELVELMDNTSE 904


>gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
 gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703]
          Length = 923

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/906 (40%), Positives = 548/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKMTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I          D +     +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPAYGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 103/277 (37%), Gaps = 42/277 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEK---------------VWRLPIGSPQARGKALINILS-------------- 623
           S+LG   +                 +      S     +   N L               
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSG 768

Query: 624 ------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                 L    +I +++ F  +    ++L V+ AT +G  +R  ++D+ + N+ G+  + 
Sbjct: 769 GLRGMRLPAYGKIVSLITFAPEAEQ-SDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 827

Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +++ +     ++    ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ 
Sbjct: 828 INTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGET 886

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           ++S+  V     D                  +   E 
Sbjct: 887 LVSLERVAEEAEDEAALESDAAENQVVEAEDTPSQES 923


>gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99]
          Length = 878

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I   G+  +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVCLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +      +L
Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVCLTDGEKHIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++   + + K   +   S  A   A +  + L  G+ +  +    +D        ++ 
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDE----ILV 717

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + D+        G    KL      ++ + T   + D+++ T  G  +R
Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S I    GR + GVR I L +   V ++A V     D +         ++    +  
Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836

Query: 768 DTEEITSLKNDSSVEGNISEER 789
           D        +  + E  +S ER
Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858


>gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 892

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/902 (43%), Positives = 564/902 (62%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   EYPESRIIERNISNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLATELLRDINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV++G +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNMTEVINGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVV+EIP+QVNKA M+EKIAEL REK++  I DLRDE+  R G 
Sbjct: 243 MRARAEIEERGGGRQRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVILNNLYKLTPLQTSFGVNMIALINGRPKLINLKEALVEYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA DRAH+L GL IA+ ++DE++  IR S   + A   L           
Sbjct: 363 VRRRTEYNLKKAEDRAHILEGLRIALDHIDEIISTIRESETDKEAMERL----------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G   LSE Q +AIL++RL RLTGL RD I +E N L   I+E  
Sbjct: 412 ---------------QGRFKLSERQAQAILDMRLRRLTGLERDKIESEYNELIAYIEELR 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  V++     RR+ I   GL  +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEVRERFGDERRSEIQLGGLDQIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ +  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQIVTMSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  +IN + L   E I+T++   + E    + Y+VFATK+G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVINAIELENDESISTMIAVNDLE--KEDAYLVFATKNGIVKRSSLSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V       D+LL T     +RF  S +R   GR + GV+GI
Sbjct: 635 INRNGKIAINFRDEDELVAVRLTDGTKDVLLGTSHASLIRFKESKLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+++ +A+                                               
Sbjct: 694 TLREGDELVGLAVATED------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++RISNR GKGI+   +++ N  G +V +  V
Sbjct: 711 --------SEDEVLVVTENGYGKRTPLNEYRISNRGGKGIKTATITEKN--GDIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + I++V+++G +IR+ V++I    RA +GV +    +++ V +V +++E ++ DE E
Sbjct: 761 TGEEDIMIVTNQGVIIRIDVDDISQNGRAAQGVRLIRLGEEQFVSTVAKVQE-DLEDELE 819

Query: 908 ST 909
            T
Sbjct: 820 GT 821


>gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74]
 gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74]
          Length = 838

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/910 (40%), Positives = 546/910 (60%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +     D E    I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM
Sbjct: 1   MADET--PDLESPSNIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV +NK + K ARI GEV+GKYHPHG++++YD + RMAQDWSLR  L++GQGNFGS+
Sbjct: 59  AELGVNYNKPHKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL++ A  LL D+ K+TVDF+ N+D S QEP V+ A+ PN+L+NG  
Sbjct: 119 DGDSPAAMRYTEARLKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EVVDG +A ++N +I ++ LM+ ++ PDFPTGA I G  G+K+A
Sbjct: 179 GIAVGMATNMAPHNLTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIYGMEGVKSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG +V+R  + IE+    + QI+VT++PY VNKA MLEK AEL+ +K+I  I   R
Sbjct: 239 FKTGRGRVVMRAHATIEENR-GKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV +L++ A  +V+LN LY++T+LQS FS+N VAL   +P    L  ++K 
Sbjct: 298 DESDRDGLRVVYDLRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGRPMMLNLKDMMKY 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R EV+ RRT+Y L +A  RAH+L GL IA+ N+D V+ +IR S +PE AR  LM+R
Sbjct: 358 YVEHRFEVITRRTQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMER 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q +AILE+RL RLTGL RD ++ E + L
Sbjct: 418 --------------------------FSLSDLQAKAILEMRLQRLTGLERDKLQAEYDEL 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539
             EI +  +IL+S  R   +IK+EL  ++      RRT I   G  ++ D   I  EDMV
Sbjct: 452 MTEIADLKEILASEERKRQVIKEELTDIRARYGDERRTEINPLGDGNISDLSLIADEDMV 511

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH GY+KR P + YR+Q RGG G      ++EDF   LF  + H ++L F+  G +Y
Sbjct: 512 ITISHEGYIKRTPTTEYRSQGRGGVGAKAASTKEEDFTEHLFTATMHNTLLAFTQKGRMY 571

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657
              V+ LP GS  ++G+ L N +++   +++  ++   +  +E   NN Y+V  T+ G +
Sbjct: 572 WLPVYELPEGSRTSKGRPLANFINIESDDKVRAVINVTDLKNEDYINNNYIVMCTRKGTI 631

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  + +  ++G IA+ +D  D++L V     +NDI++ +  G+ VRF  S +R   
Sbjct: 632 KKTMLEAYSRPRQNGIIAITIDEDDQLLGVCMTNGDNDIVIASSAGKAVRFHESRVRPM- 690

Query: 718 GRNSVGVRGISLAKG---DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           GR + GVRGISL +    D VI M  +   DA                            
Sbjct: 691 GRTAAGVRGISLDEEDPTDHVIGMVCISSQDAQ--------------------------- 723

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    +L VS+ G+GKR+    +RI+NR  KG+    +++
Sbjct: 724 -------------------------LLVVSQNGYGKRSDIDGYRITNRGAKGVGTLKITE 758

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             ++G LVAV  V DND +++++  G  IR PV+ I +  R T+GV +    + + + SV
Sbjct: 759 --KVGRLVAVLDVADNDDLMIINKSGIAIRTPVDAINVIGRNTQGVRLIKLNEGDEISSV 816

Query: 895 ERIRESEIVD 904
            +I++ E  +
Sbjct: 817 TKIKKEEGEE 826


>gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
 gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7]
          Length = 823

 Score =  886 bits (2290), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/907 (41%), Positives = 542/907 (59%), Gaps = 94/907 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V I+ EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K Y
Sbjct: 3   NEGKILPVDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+YDAL R+AQD+S+R  L+ G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L D+ K+TVDF PN+DG  QEP V+ AR+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKITLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G   +IDNP++ +  LM  I+GPDFPT  +ILG+ GI++AY TGRG +++R
Sbjct: 183 PHNLTEVINGISMLIDNPEVTITELMTEIKGPDFPTAGIILGKLGIRDAYETGRGKVIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTEIPYQVNKA ++E IA+LV++K+I  I+D+RDESDR+G R+V
Sbjct: 243 AKTDIEEEK-GRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +VILNQLY++T +Q  F + M+AL   KPE   L  IL  ++ F++EV+ R
Sbjct: 302 IELKRDANPNVILNQLYKHTKMQDTFGIIMLALVNNKPEVLNLKQILVHYLEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+ +IR S N E A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         +  LSE Q +AIL++RL RLTGL R+ I NE   L   I    D+L
Sbjct: 409 -------------NSFNLSEKQAQAILDMRLQRLTGLEREKIENEYKELENTIAYLKDVL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +    +L IIK+EL  +K++    RRT I +   ++  ED I  +++VVT++H GY+KR+
Sbjct: 456 AKEELVLKIIKEELTEIKNKYGDDRRTEIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y AQ+RGGKG   +  +++DFV  +F+ STH ++LFF++ G VYK K + LP    
Sbjct: 516 AADTYSAQKRGGKGIQAMTTKEDDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  LIN+L +   E+I  ++ F E +      Y +  T+ G +++ ++S +  I ++
Sbjct: 576 TAKGVNLINLLPIETNEKIQAVITFKEFD---KTNYFIMGTRQGLIKKTQVSQYSSIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V   T E++IL+ TK G  +RF    +R   GR + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIGVRMTTGESEILVFTKNGYAIRFNERDVRPM-GRTATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M IV                                                  
Sbjct: 692 EDIAVAMDIVCEGQD--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE GFGKRT   ++    R GKG+    +++  + GA+V    V D D
Sbjct: 707 --------VLVISENGFGKRTPVSEYTPHRRGGKGMITYKITE--KTGAIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--------ESEIV 903
           +++LV+     IR+ V+ I   SR   GV +  T ++++VV++ +I           E  
Sbjct: 757 EMMLVNSSNVAIRLNVSGISTTSRNAMGVTLMRTDEEQKVVAIAKINYDENVEKIAEEKD 816

Query: 904 DEAESTE 910
           DE    E
Sbjct: 817 DEISENE 823


>gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 840

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 554/905 (61%), Gaps = 90/905 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +      +  + +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    
Sbjct: 2   DENTIFDKVHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL D+ K+TVDFRPN+D + +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL EV++  + +IDN      +  ++ L+EII+GPDFPTGA ILGR+GI  AY 
Sbjct: 182 TNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATILGRSGIDQAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V+ IE  +  +++I+VTE+PY VNKA ++EKIA LVREK++  I +LRDE
Sbjct: 242 TGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+ IEL+R A+A+VILNQLY++T LQ  F V M+AL   +P+   L  +L  ++
Sbjct: 302 SDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQPKTMNLHEMLDYYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +++VV RRT+Y LNKA +RAH+L GL IA  N+DEV++IIR + N + A+ ELM+R  
Sbjct: 362 THQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELMER-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q +AI+++RL  L GL R  +  E   L  
Sbjct: 420 ------------------------FGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELME 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   IL+   +LLG+IK E+  ++D+    RRT+I   + D+  ED I RE+ V+T+
Sbjct: 456 RIGELKAILADEKKLLGVIKDEIALIRDKYGDERRTQIGFDVDDISMEDLIPRENTVITM 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LGY+KR+ +  +++Q RGGKG  G+   DED++ +LF+ +TH  ++FF++ G VY+ K
Sbjct: 516 TKLGYIKRMTVDNFKSQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     ARG A++N+L L  GE+IT ++P  + E      Y++ ATK+G V+++ +
Sbjct: 576 AYEIPESGRTARGSAIVNLLQLQPGEKITAVIPLVDYE---EGKYLLMATKYGVVKKSSI 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            ++  I ++G  A+ L   D+++ V+    + D+ L TK GQC+RF  S +R   GR S+
Sbjct: 633 MEYANIRKTGLAAITLKDDDQLIEVKYTEDDEDVFLVTKNGQCIRFHESDVRCI-GRTSM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+L   D+VI M +    +A                                    
Sbjct: 692 GVRGINLTGDDEVIGMQLDSQGEA------------------------------------ 715

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L VS  G GKRT + +F   +R GKGI+   +++  + G +V
Sbjct: 716 -----------------LLIVSANGMGKRTLTSEFTTQHRGGKGIKCYKITE--KTGDVV 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            V  VND+++I++++ +G +IR  V+ I I  R T GV + +  ++  V S+ ++RE ++
Sbjct: 757 GVKAVNDDNEIMMITTEGIIIRTAVDSISILGRNTSGVKVMNVGENVEVASIAKVREEKL 816

Query: 903 VDEAE 907
            DE E
Sbjct: 817 EDEME 821


>gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
 gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380]
          Length = 835

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/892 (43%), Positives = 550/892 (61%), Gaps = 84/892 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+   +V+I DE++ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  +NK Y 
Sbjct: 4   EQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKPYK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + R+AQD+++R  L++GQGNFGS+DGD  AA RYTE
Sbjct: 64  KSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL K+TVDF PNYD S QEP+VL  ++PN+LVNG  GIAVGMAT IP 
Sbjct: 124 VRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG VA+ID+P +D + L  +I GPDFPT   ILGR GI+ AY TGRG + +R 
Sbjct: 184 HNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFILGREGIRKAYETGRGIVQMRA 243

Query: 253 VSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            + +E      RE+IVVTEIPYQVNKA ++EKIAELV+ ++I  I+DLRDESDR+G RVV
Sbjct: 244 RALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGIRVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+    +VILNQLY+ T++QS F + M+A+   +P   +L  +L+ F+  R+E+V R
Sbjct: 304 VELKKDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQPRVLSLRAVLEHFIEHRKEIVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  + L KA ++AH+L G  IA+ NLDEV+ II+ S NP  A++ LM+R           
Sbjct: 364 RCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMER----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AIL++RL RLTG+ RD I  E   +   I    +IL
Sbjct: 413 ---------------FALSEIQAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   +L IIK EL  ++++   PRRT IV+   D+  ED IV EDMVVTVSH GY+KR 
Sbjct: 458 ASEVEILKIIKSELSEIREKFADPRRTEIVDHRGDLSLEDLIVDEDMVVTVSHSGYIKRN 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +S+YR+QRRGGKG +G+  ++EDFV  LFI STH+ VL F+  G VY  KV  +P G  
Sbjct: 518 AVSLYRSQRRGGKGVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RGKA++N+L L  GE +T+I+P  E        Y++FAT++G V++  L  +      
Sbjct: 578 ASRGKAIVNLLQLQSGENVTSILPVREFT---EGRYIIFATQNGIVKKTDLMAYANPRSG 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ +D  D ++S      E D+LL ++ G+ +RFP    R   GR S GVRG++L  
Sbjct: 635 GIIALTIDEGDRLVSTRLSDGEMDVLLASQNGKAIRFPEKDARAM-GRTSRGVRGMALEG 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            DQVI M +V    A     +                                       
Sbjct: 694 DDQVIGMEVVSDTTAATLVTVT-------------------------------------- 715

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                        E G+GKRT+  ++R   R GKGI     S+ N  G +V +  +ND+ 
Sbjct: 716 -------------EHGYGKRTNLDEYRQQGRGGKGIITIKTSERN--GKVVDIKLINDDF 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++ ++D G ++R  V ++ +  R T+GV +      ER+V+V ++ E E  
Sbjct: 761 DLMFITDGGKVLRTRVADLSVIGRNTQGVRLMVLEPGERIVAVAKLAEKEED 812



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 89/231 (38%), Gaps = 13/231 (5%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  Y   R GG     +   + D +    +      VL  S  G   +  
Sbjct: 615 TQNGIVKKTDLMAYANPRSGGIIALTID--EGDRLVSTRLSDGEMDVLLASQNGKAIRFP 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                     +RG   +  ++L   +++  +    +  ++          +HG  +R  L
Sbjct: 673 EKDARAMGRTSRG---VRGMALEGDDQVIGMEVVSDTTAATLVTVT----EHGYGKRTNL 725

Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++ Q  R GK  + +       +++ ++    + D++  T  G+ +R  ++ +    GR
Sbjct: 726 DEYRQQGRGGKGIITIKTSERNGKVVDIKLINDDFDLMFITDGGKVLRTRVADL-SVIGR 784

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           N+ GVR + L  G++++++A +   + D          +       + D E
Sbjct: 785 NTQGVRLMVLEPGERIVAVAKLAEKEEDNGTAEAEEAALEGGTGEGAQDVE 835


>gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  886 bits (2289), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I   G+  +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +      +L
Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGEKHIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++   + + K   +   S  A   A +  + L  G+ +  +    +D        ++ 
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDE----ILV 717

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + D+        G    KL      ++ + T   + D+++ T  G  +R
Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S I    GR + GVR I L +   V ++A V     D +         ++    +  
Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836

Query: 768 DTEEITSLKNDSSVEGNISEER 789
           D        +  + E  +S ER
Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858


>gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 815

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/904 (40%), Positives = 561/904 (62%), Gaps = 89/904 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++  +++E     +  V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSDNNTNNEE---MRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K   + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R  L++G GNFGS+
Sbjct: 58  NGLGLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG  
Sbjct: 118 DGDPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DG +A IDNP I  + LM+ I+GPDFPTG +I+G+ GI+  
Sbjct: 178 GIAVGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIVGKDGIRET 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE+ +  R +IV+TE+PY V K+ ++EKIAELVR+K I  I+DLR
Sbjct: 238 YETGRGKIIVRAKAEIEEHN-GRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR  +  V+LN+LY +T +Q  F   M+AL    P+  +L  I++ 
Sbjct: 297 DESDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEK 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + +V+ RRT++ L KA +RAH+L GL IA+ ++DEV+ +IR S     A++ LM +
Sbjct: 357 YVDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKKNLMDK 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q++AI+++RL RLTGL R  + +ELN L
Sbjct: 417 --------------------------FGLSDKQSQAIVDMRLGRLTGLERQKVEDELNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+E   IL+   ++L IIK+EL  +KD+  + R+T IV  + +M+ ED +  ED VV
Sbjct: 451 YRKIEELKGILADEKKVLEIIKKELKEIKDKFSSERKTHIVAKVDEMDIEDLVQLEDAVV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+PL  Y++Q+RGGKG SG+  R++DFV ++F  +TH  +LFF++ G VY 
Sbjct: 511 TMTHFGYIKRMPLDAYKSQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYS 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P    QA+G A++N++ ++Q E+++ ++P  +   S    YVV  TK G +++ 
Sbjct: 571 LRTIDIPESGRQAKGTAIVNLIQIDQDEKVSAVIPIKK---SVKAKYVVMCTKKGIIKKT 627

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++ DF +I +SG  A+KLD  DE+++V     + +I++ T  G C+RF  + +R   GR 
Sbjct: 628 EIDDFPKIKKSGNTAIKLDDGDELINVMLTNGDREIIIGTANGYCIRFHENNLRPM-GRQ 686

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV  ISL   D V+ M                                          
Sbjct: 687 ARGVIAISLRDDDYVVEM------------------------------------------ 704

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                      +L  ++  IL V+E G+GKR+   ++R   R+GKGI AT +++  + G 
Sbjct: 705 -----------DLINEDNEILVVTENGYGKRSDVKEYRSQTRAGKGIIATKITQ--KTGK 751

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV++  V++ D+++++S  G LIR  + +I    R   GV +      +RVVS  +I   
Sbjct: 752 LVSIMSVSEKDELMIISANGILIRTRIADISKMHRDASGVTLMKLDDGDRVVSTAKIDND 811

Query: 901 EIVD 904
           +  +
Sbjct: 812 DDQE 815


>gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
 gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03]
          Length = 878

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/901 (43%), Positives = 563/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I   G+  +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +      +L
Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGEKHIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++   + + K   +   S  A   A +  + L  G+ +  +    +D        ++ 
Sbjct: 665 IGTAQASLIRFKETDVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDE----ILV 717

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + D+        G    KL      ++ + T   + D+++ T  G  +R
Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S I    GR + GVR I L +   V ++A V     D +         ++    +  
Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836

Query: 768 DTEEITSLKNDSSVEGNISEER 789
           D        +  + E  +S ER
Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858


>gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 893

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/912 (43%), Positives = 560/912 (61%), Gaps = 86/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E ++ ++  +   I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+
Sbjct: 1   MKEELLMAELPQ-SRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGL 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+
Sbjct: 60  NEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSM 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  
Sbjct: 120 DGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ A
Sbjct: 180 GIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLR
Sbjct: 240 YETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLR 299

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE+  R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L 
Sbjct: 300 DETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALV 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L Q
Sbjct: 360 HYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQ 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE Q +AIL++RL RLTGL RD I  E N 
Sbjct: 420 R--------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDM 538
           L   I E   IL+    LL +++ EL  ++D     RRT I   G  ++EDED I  E +
Sbjct: 454 LLNYISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQI 513

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T+SH  Y+KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G V
Sbjct: 514 VITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRV 573

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           YK K + +P  S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+
Sbjct: 574 YKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R+ LS+F +INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   G
Sbjct: 632 RSALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-G 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+GI+L +GD+V+ + +      D                               
Sbjct: 691 RTATGVKGITLREGDEVVGLDVAHANSVDE------------------------------ 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  
Sbjct: 721 ---------------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN-- 757

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V +  V   + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 758 GNVVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 817

Query: 899 ESEIVDEAESTE 910
           E +  DE    E
Sbjct: 818 E-DAEDETNEDE 828



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 613 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 670

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 671 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 723

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 724 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 783

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 784 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 839

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 840 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 872


>gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102]
 gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102]
          Length = 923

 Score =  886 bits (2288), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/906 (40%), Positives = 547/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D     +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEDDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I          D +     +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 104/277 (37%), Gaps = 42/277 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + ++++D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEDDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEK---------------VWRLPIGSPQARGKALINILS-------------- 623
           S+LG   +                 +      S     +   N L               
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSG 768

Query: 624 ------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                 L    +I +++ F  +    ++L V+ AT +G  +R  ++D+ + N+ G+  + 
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQ-SDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 827

Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +++ +     ++    ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ 
Sbjct: 828 INTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGET 886

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           ++S+  V     D                  +   E 
Sbjct: 887 LVSLERVAEEAEDEAALESDAAENQVVETEDTPSQES 923


>gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 812

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/902 (42%), Positives = 557/902 (61%), Gaps = 90/902 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++       EE  +  V + DEM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSDNT----NNEELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K   + GEV+GKYHPHG+ A+YDA+ RMAQD+S+R  L++G GNFGS+
Sbjct: 57  NGLGLTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K+TVDF PN+D +++EPVVL +R+PN+LVNG  
Sbjct: 117 DGDPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQ 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DG +A IDNP I  D LM  I+GPDFPTG +I+G+ GI+  
Sbjct: 177 GIAVGMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIVGKDGIRET 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE+ +  R +IVVTE+PY V K+ ++EKIAELVR+K I  I+DLR
Sbjct: 237 YETGRGKIIVRAKAEIEEHN-GRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR  +  V+LN+LY +T +Q  F   M+AL    P+  +L  I++ 
Sbjct: 296 DESDRNGMRIVIELKRDVNPKVVLNKLYMHTQMQQTFGAIMLALVDGAPKILSLNQIIEK 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + +V+ RRTK+ L KA +RAH+L GL IA+ ++DEV+ +IR S     A+  LM +
Sbjct: 356 YVDHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSSKTEPIAKNNLMDK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AI+++RL RLTGL R  I +ELN L
Sbjct: 416 --------------------------FGLSDRQAQAIVDMRLGRLTGLERQKIEDELNDL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE   ILS   ++L IIK+EL  VKD+  + RRT IV    +++ ED +  ED VV
Sbjct: 450 YQKIKELKSILSDEKKVLDIIKKELKDVKDKYSSGRRTHIVAKEDEVDIEDLVQLEDAVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+PL  Y+AQ+RGGKG SG+  R++DFV ++F  +TH  +LFF++ G VY 
Sbjct: 510 TMTHFGYIKRMPLDAYKAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYS 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   +P    QA+G A+IN++ ++Q E++  ++P  +   S N  YVV  TK+G +++ 
Sbjct: 570 LRTIDIPESGRQAKGTAIINLIQIDQDEKVNAVIPIKK---SHNAKYVVMCTKNGIIKKT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++ DF +I +SG  A+KLD  DE+++V       +I++ T  G C+RF    +R   GR 
Sbjct: 627 EIDDFPKIKKSGNTAIKLDDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPM-GRQ 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV  ++L   D V+ M                                          
Sbjct: 686 ARGVIAVTLRDDDYVVEM------------------------------------------ 703

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                      +L  +++ IL V+E G+GKR+ + ++R   R+GKGI A  ++K  + G 
Sbjct: 704 -----------DLVDRDKDILVVTENGYGKRSDANEYRSQTRAGKGIIAAKITK--KTGK 750

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV++  V++ D+++++S  G LIR  + +I    R T GV++    + +RVVS  RI   
Sbjct: 751 LVSIMSVSEKDELMIISANGILIRTKIADISKMHRDTTGVMLMKLDEGDRVVSTARIAND 810

Query: 901 EI 902
           E 
Sbjct: 811 EE 812



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 90/248 (36%), Gaps = 13/248 (5%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           ++    +    R+  +A      DE+   +    E+ ++  T  G   R P+ A +    
Sbjct: 475 KDVKDKYSSGRRTHIVA----KEDEVDIEDLVQLEDAVVTMTHFGYIKRMPLDAYKAQK- 529

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSL 775
           R   G+ GIS  + D V ++      D      ++   Y                     
Sbjct: 530 RGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIIN 589

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 +  ++     +     ++++  ++ G  K+T   DF    +   G  A  +   
Sbjct: 590 LIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKK--SGNTAIKL--- 644

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++   L+ V   + N +II+ +  G  IR   + +R   R  +GV+  +   D+ VV ++
Sbjct: 645 DDGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRDDDYVVEMD 704

Query: 896 RIRESEIV 903
            +   + +
Sbjct: 705 LVDRDKDI 712


>gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120]
 gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120]
          Length = 872

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/904 (41%), Positives = 539/904 (59%), Gaps = 42/904 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYT
Sbjct: 64  KKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ   +  LL D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG VAVI NP+I    LM+ I GPDFPTGA ILG   IK AY TGRGSI +
Sbjct: 184 PPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGVGAIKEAYTTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV++IE        DRE I++TE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR 
Sbjct: 244 RGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+   L   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILNLKQFLNVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+++LD ++ +IR + +  TA+ EL+        
Sbjct: 364 ESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELIT------- 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  LSEVQ  AIL+++L RLT L  D IR E   L  +I +
Sbjct: 417 -------------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II+ E+  +K    TPRRT I     ++++ D I  E  ++ ++  G
Sbjct: 458 LQDILARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G++   ++D+D +        H SVLFFS  G VY  K +++
Sbjct: 518 YIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+GS  +RG  ++ +L + + E+IT+I+P  E     +  Y+V  TK GN+++ +L+ F 
Sbjct: 578 PLGSRTSRGTPIVQLLPIPKEEKITSIVPVDEFT---SEEYLVMLTKGGNIKKTELAAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGV 724
            I  +G IA+ L+  D++  V     E+ I++ ++LG  + F      +R   GR + GV
Sbjct: 635 NIRANGLIAISLEEGDQLRWVRRARVEDSIIVGSRLGMAIHFRCTHEQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD+++ M I+  A  D                + + D E             N
Sbjct: 694 KSMKLKKGDELVGMDILPAAILDTLNTE-----EPDIDDIETEDIETAVETTEVLETLEN 748

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +             ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +
Sbjct: 749 LEAVEVSSTASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATL 808

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN +++I++V+++G +IR  VN I I SR+  GV +    +D+ +  V  +      +
Sbjct: 809 GIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDTGDE 868

Query: 905 EAES 908
           E   
Sbjct: 869 EEAE 872


>gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
 gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168]
          Length = 816

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/895 (42%), Positives = 547/895 (61%), Gaps = 86/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +  V I +EM+ +YL YA++VI+ RA+PD+RDGLKPV RRIL+ +  +G+  NK +
Sbjct: 6   NNGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPH 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG+ A+YD + RMAQ++S R  L++G GNFGS+DGD  AA RYT
Sbjct: 66  KKSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGM+TNIP
Sbjct: 126 EVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG VA+IDNPD+++  LM+II+GPDFPTG +I+G+  I  AY TGRG + +R
Sbjct: 186 PHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGGIIMGKDKIYQAYKTGRGRLKVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE+    + +I++TEIPYQVNKA ++EKIA LVR+++I  I+DLRDESDR+G R+V
Sbjct: 246 GKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+G    VILN+LY+YT LQ  + V M+AL    P   TL  +L  ++  ++EVV R
Sbjct: 306 IELKKGTVPKVILNRLYKYTQLQVTYGVIMLALVDGMPRVLTLKELLNHYLEHQKEVVTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L+KA  RAH+L GL IA+AN+D++V++IR +P+ +TARR L++            
Sbjct: 366 RTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIE------------ 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q  AIL +RL RLTGL RD I  E   L  +I     IL
Sbjct: 414 --------------NFNLTEKQAEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSIL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   +LLGIIK ELL +K++    RRT I    +D++ ED I  E +V+T++H GY+KR+
Sbjct: 460 ADEGKLLGIIKDELLELKEKFQDERRTEISIQAVDLDVEDLIPEEQVVITLTHHGYIKRM 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+ +YR+QRRGGKG  G+  ++EDFV  +F  STH   LFF++ G VY+ +V+ +P  S 
Sbjct: 520 PIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASR 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QARG A++N+L L + ERITT++P  E +      Y+V  T++G +++  L+++     +
Sbjct: 580 QARGTAIVNLLELEEEERITTVIPIREFD---EERYLVMVTRNGMIKKTPLAEYES-RYT 635

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G I + L   DE++ V+       +++ T  G+ + F  + +R   GR ++GV+ I+L  
Sbjct: 636 GLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSM-GRTAMGVKAITLED 694

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+ M +    D                                              
Sbjct: 695 GDYVVGMGVDSEGDD--------------------------------------------- 709

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L ++EKG+GKRT   ++R+ +R GKG+   ++++ N  G L  V  V ++ 
Sbjct: 710 --------LLVITEKGYGKRTPLEEYRLQSRGGKGLITANITEKN--GNLAGVKVVREDH 759

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +IL++ +G +IR  V  I    R T GV +    + +RVVS+ RI   E   E 
Sbjct: 760 DLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEKDIEE 814


>gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 816

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/893 (41%), Positives = 549/893 (61%), Gaps = 84/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  NK 
Sbjct: 4   EPQENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+A++YDA+ RMAQDWSLR  L++GQGNFGS+DGD PAA RY
Sbjct: 64  FKKSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L DL KDTVDF+ N+D S QEP VL A+ P +L+NG  GIAVGMATN+
Sbjct: 124 TEARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNM 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A I+N DI ++ LM+ I+GPDFPT  +I G  GI+ AY TGRG +++
Sbjct: 184 PPHNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGSQGIREAYRTGRGKVLM 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE T   +EQI+VTEIPY VNKA ++E+ A+LV EK+I  I+D+RDESD+ G R+
Sbjct: 244 RAKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V +LKR A   V+LN LY+ TSLQ  F VN VAL   KP+   L  +++ FVA R EV++
Sbjct: 304 VYDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGKPQTLNLKELIQHFVAHRHEVLL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+TKY LN+A+ R H+L G  IA+ NLD ++ +IR S + E A++ L+Q           
Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQ----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q +AILELRL RLTG+ RD I  E       I+    I
Sbjct: 413 ---------------TYQLSEQQAKAILELRLQRLTGMERDKILQEHRETTQLIERLQLI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS R   + +IK EL  +K++    RRT I     D+  ED I  EDMV+T+S  GY+KR
Sbjct: 458 LSDRDLQMTLIKNELAELKEQYGDARRTVIEHNTDDITLEDMIAEEDMVITISQQGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS YR Q RGG G      +++D++T LF+ STH  +L F++LG V+ +KV+ LP GS
Sbjct: 518 TPLSEYRIQNRGGVGARSTATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N++ +  G+++ +++      DE+  N+ Y++  T  G +++  L  +I  
Sbjct: 578 KSSKGRAIQNLIPIAPGDQVQSVIKVRNLKDETYVNSRYILMCTVQGVIKKTPLDAYINP 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+K++  D +L+V+    +N +++  + G+ + F    +R   GR S GVRGI+
Sbjct: 638 RTNGIQAIKINEGDRLLTVKLTKGDNHVIIALRSGRAIHFHERDVRSM-GRVSTGVRGIT 696

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA   D+V+ M  V   D +                                        
Sbjct: 697 LAGPEDRVVGMVTVYKPDIE---------------------------------------- 716

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+EKG GKR++  D+RI+ R GKG++  ++++  + GAL A+  V
Sbjct: 717 ------------LLVVAEKGVGKRSAVADYRITKRGGKGVKTLNITE--KTGALAAIEAV 762

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            D D++++++  G  IR+ V+ +RI  R T+GV +    + + + S+ +I E+
Sbjct: 763 TDADELLIINTSGIAIRIEVSTLRIMGRNTQGVRLIRLNEGDAITSIAKITEN 815


>gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
 gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114]
          Length = 848

 Score =  885 bits (2286), Expect = 0.0,   Method: Composition-based stats.
 Identities = 412/891 (46%), Positives = 612/891 (68%), Gaps = 44/891 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             K + + +I+DEM++SYL+YA++VI+ RA+PD RDGLKPVHRRI++ M + G +W+K++
Sbjct: 2   SSKNLGNRNISDEMKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YDAL R+AQD+S+   L+EGQGNFGS+DGD  AA RYT
Sbjct: 62  RKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K + FL+ D+ K+TV+F+ NYD +  EPVVL A++PN+LVNG GGIAVGMATNIP
Sbjct: 122 ETKLAKISEFLISDIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A +DN  I +  +M+ I GPDFPTG +ILG+  IKN Y  GRGSI IR
Sbjct: 182 PHNLGEVIDGTLAYLDNNKISVSEIMKKIPGPDFPTGGIILGKNEIKNGYEKGRGSIKIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+ S DR+ I++  +PYQVNK  ++EKIA L+R+K++  IADLRDES+++G R+V
Sbjct: 242 GEIEIEEGSRDRKLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL++G + ++I+NQLY+++ L+S F  N +A+N  KPE   L   ++ FV+FRE+ +++
Sbjct: 302 IELRKGVNQEIIINQLYKFSPLESSFGFNTLAINEKKPELLNLKQFIEIFVSFREKTIIK 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+DR+H+L+GL IA+ N+DE++ IIR S  P  A+  L++++WN    K  +
Sbjct: 362 RTLFDLKKAKDRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSK--L 419

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +    +   +       LS+ Q +AIL+LRL +LT +G D+I NEL+ L   I +   IL
Sbjct: 420 NKNILNINELSDLDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKIL 479

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + ++ L+ +IK EL+ +K++  TPR+T+IV+ +  +E ED I +E ++VTV++ GY+KR 
Sbjct: 480 NDKTELINLIKNELIGIKNKFSTPRKTKIVDQITSVEVEDVIQKEQVIVTVTNKGYIKRT 539

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P++  +AQ+RGG+G+ G+V R+EDFVT LF V+T T VLFFS+ G VYK K W++P GS 
Sbjct: 540 PITNIKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEGSN 599

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q++GK+L N+L ++    +++IMP PE+E+ W++L +VF TK G +R+N L DF  I  +
Sbjct: 600 QSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVFITKLGKIRKNNLEDFKNIQSN 659

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GKIAMKLD  DEI+SV+      D+++ +  G+ +R     IR+F GR+S GV+G++L  
Sbjct: 660 GKIAMKLDKEDEIVSVKLLKANEDVMINSYNGKSLRVNSKKIRLFKGRSSKGVKGMNLKN 719

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+VIS++I+       D+                                         
Sbjct: 720 NDRVISLSILNPNIISSDK----------------------------------------D 739

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+K KE+FILT++E G+GKR+S+Y+FR + R G+GI     ++ N  G + A FP+  +D
Sbjct: 740 EMKSKEEFILTITENGYGKRSSAYEFRETGRGGQGIINISTTERN--GNVAASFPIKSDD 797

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            I+LV+ KG +IRV VNEIR+A R T+GV IF T+ DE+VV+  R+ ++  
Sbjct: 798 DIMLVTSKGQMIRVKVNEIRVAGRNTQGVRIFKTSSDEKVVTAVRLADNNE 848



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 16/232 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +E  I+  T  G   R PI+ I+    R   G  GI   + D V  +  V       
Sbjct: 520 VIQKEQVIVTVTNKGYIKRTPITNIKAQK-RGGRGKIGIVTREEDFVTQLFSVNTLTPVL 578

Query: 749 DERICYMKHMSAQRRLISGDTEEITS------LKNDSSVEGNISEERCQELKLKEQFILT 802
                 + +     ++  G  +            ++ S   +I      E +  +  I+ 
Sbjct: 579 FFSNKGIVYKLKTWKIPEGSNQSKGKSLHNLLPIDNQSYVSSIMPLPENENEWSDLNIVF 638

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +++ G  ++ +  DF+    +GK   A  +   ++   +V+V  +  N+ +++ S  G  
Sbjct: 639 ITKLGKIRKNNLEDFKNIQSNGK--IAMKL---DKEDEIVSVKLLKANEDVMINSYNGKS 693

Query: 863 IRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE---SEIVDEAESTE 910
           +RV   +IR+   R++KGV   +   ++RV+S+  +     S   DE +S E
Sbjct: 694 LRVNSKKIRLFKGRSSKGVKGMNLKNNDRVISLSILNPNIISSDKDEMKSKE 745


>gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 848

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/902 (41%), Positives = 552/902 (61%), Gaps = 85/902 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M E   + +       I  ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+G
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M+ +GV   K Y K ARI G+V+GKYHPHG++++YDA+ R+AQDWS+R  L++GQGN+GS
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL+K A  +L D+ KDTVDF+ N+D S +EP VL  R PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTEARLKKIAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVVDG +A IDN +I++  LM+ I+GPDFPTG +I G  G+K 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTIAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A  TGRG +V+R  + IE T   RE I+VTEIPYQVNKA M+++ AELV EK+I  I+++
Sbjct: 241 ACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G+RVV ++KR A+A+V+LN LY+YT+LQ+ FSVN +AL   +P    L  ++ 
Sbjct: 301 RDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIH 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV+RRTK+ L +A  RAH+L G  IA+ +LDEV+++IR S  PE AR  LM+
Sbjct: 361 EFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++Q RAIL++ L RLTGL RD I+ E N 
Sbjct: 421 R--------------------------FALSDLQARAILDMTLRRLTGLERDKIKEEYNE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I+   ++LS     + IIK ELL +KD+    RR+ IV    DM  ED I  E++V
Sbjct: 455 LMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH  YVKR PLS Y+ Q RGG+G  G   R+EDF   +   S H  +LFF+  G  +
Sbjct: 515 ITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCF 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657
             + + +P GS  +RG+AL NI+++ + E+I   +      D+    N +++  TK G +
Sbjct: 575 WLRAFEIPEGSRTSRGRALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  + +   +G  A+ ++  D+++        ++I++  + G+ +RF  S +R   
Sbjct: 635 KKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM- 693

Query: 718 GRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR + GVRGI+LA + D+V+ M  V +                                 
Sbjct: 694 GRTATGVRGITLAHEKDEVVGMISVNNP-------------------------------- 721

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               E  +L VSEKG+GKRT   D+R++NR GKG++  +V+  +
Sbjct: 722 --------------------EVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--D 759

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G LVA+  V D++ +++++  G +IR+ V ++R+  RAT+GV + +   ++ + S+ +
Sbjct: 760 KTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITK 819

Query: 897 IR 898
           + 
Sbjct: 820 VE 821



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 13/238 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             + ++  +  G +K+  L  Y   R  G   + + + + D + +  +    + ++    
Sbjct: 621 ENNFIIMCTKKGTIKKTSLEAYSRPRANG--INAININEGDQLIEACLTDGSSEIVMALR 678

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +      A G   +  ++L   +             +   + V+  ++ 
Sbjct: 679 SGRAIRFNESTVRPMGRTATG---VRGITLAHEKDEV----VGMISVNNPEVTVLVVSEK 731

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + D+   NR GK    ++  D   E+++++  T   D+++  K G  +R  ++
Sbjct: 732 GYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIINKSGIVIRIGVA 791

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +RV  GR + GVR I+L   D++ S+  V   + +    I      S    + + + 
Sbjct: 792 DLRVM-GRATQGVRLINLKDNDEIASITKVEREEDEEITDIETEGEDSENTNIDTTEE 848


>gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
 gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1]
          Length = 891

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/891 (43%), Positives = 557/891 (62%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG +++  NPDI ++ LME I+GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++++ A+A VILN LY+ T LQS F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RIVIDVRKDANASVILNNLYKQTPLQSSFGVNMIALVNGRPKLINLKEALIHYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E N L   IKE  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+    LL +++ EL  +K+     RRT I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEVLLQLVRDELSEIKERFGDERRTEIQLGGLDDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YR+Q RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRSQNRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++     E    + Y+VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNAIELENDETISTMIAVRNLE--SEDDYLVFATKRGIVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V   T   DIL+ T     +RFP SA+R   GR + GV+GI
Sbjct: 635 INKNGKIAISFKEDDELIAVRLTTGNEDILIGTSHASLIRFPESALRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +                                               
Sbjct: 694 TLREGDEVVGLDVAH--------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 709 ------AESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERN--GNIVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +    + + V +V +++
Sbjct: 761 TGEEDLMVVTNAGVIIRLDVEDISQNGRAAQGVRLMKLGEGQFVSTVAKVK 811


>gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
 gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43]
          Length = 849

 Score =  884 bits (2285), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/900 (41%), Positives = 549/900 (61%), Gaps = 86/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+    R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR+G R
Sbjct: 242 VRAKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLM----------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 410 ---------------DEFNLSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LLG+IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +      + Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTVTD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R   GR + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHM-GRTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +  +                                            
Sbjct: 691 KDDDIAVCMDIAVDEE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   +++I +R G G+    +S+  + G LV       
Sbjct: 707 ---------ELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D+++L++  G  IR+ V++I   SRA  GV +  T ++E++V++ +I +S+  D  E+ 
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDEDLEENE 815


>gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
 gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114]
          Length = 923

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/906 (40%), Positives = 548/906 (60%), Gaps = 28/906 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNSAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R++K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMEKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLG+ ++ C+ ++D P+ ++D L+ II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLGDTINACLRLLDEPETEIDELINIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S N   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S ++D++   D   + +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRPWRSSLVEDMLSRTDLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  E  +L  +I + +DILS   R+  II++EL  +K      RR+ I     D+ 
Sbjct: 481 DQEEIVGEYKNLMSKIIDFVDILSKPERVTQIIREELADIKANFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++        +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I          D +     +       R     
Sbjct: 718 --NEYWEKSG---------NDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  +  ++  +  +         E +  +  +LT +  G+GKRT   D+   N+ G+G  
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAEQSDLQVLTATANGYGKRTPIADYSRKNKGGQGNI 826

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A +  + N  G LVA   V++ D ++L++  G LIR  V +IR   RA  GV + +  + 
Sbjct: 827 AINTGERN--GDLVAATLVSETDDLMLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEG 884

Query: 889 ERVVSV 894
           E +VS+
Sbjct: 885 ETLVSL 890



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 104/277 (37%), Gaps = 42/277 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 651 FPEDQYVFFATAQGMVKKVQLSAFKNVRSQG--IKAIALKEGDYLVGAAQTGGADDIMLF 708

Query: 593 SSLGFVYKEK---------------VWRLPIGSPQARGKALINILS-------------- 623
           S+LG   +                 +      S     +   N L               
Sbjct: 709 SNLGKAIRFNEYWEKSGNDEAEDADIETENEDSDGLDDENAENALPSGKHGVRPSGRGSG 768

Query: 624 ------LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                 L    +I +++ F  +    ++L V+ AT +G  +R  ++D+ + N+ G+  + 
Sbjct: 769 GLRGMRLPADGKIVSLITFAPEAEQ-SDLQVLTATANGYGKRTPIADYSRKNKGGQGNIA 827

Query: 678 LDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +++ +     ++    ++ +D++L T  G  +R  +  IR   GR + GVR I+L +G+ 
Sbjct: 828 INTGERNGDLVAATLVSETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGET 886

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           ++S+  V     D            A     +   E 
Sbjct: 887 LVSLERVAEEAEDEAALENDAAENQAVEAEDTPSQES 923


>gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
 gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS]
          Length = 826

 Score =  884 bits (2284), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/897 (41%), Positives = 533/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K Y
Sbjct: 2   QREKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL A  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EVV G +A+I+NP+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PHNMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR+G R+
Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN A  RAH+L GL I + NLDEV+  IR SP+   A+  LM R          
Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDR---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q++AILE+RL RLTG+ R  I +E       I+E   I
Sbjct: 412 ----------------FGLTEAQSKAILEMRLQRLTGMERQKIDDEYRETLALIEELKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S ++ + IIK ELL V D     RRT +     D   ED I +ED+V+T++H G++KR
Sbjct: 456 LESPAKQMEIIKAELLKVSDVYGDERRTELRPQEGDFSIEDMIAQEDVVITITHEGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G +G   ++EDF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I T +     +   +  +++ AT  G V++  L ++    R
Sbjct: 576 RAARGRSLANIMELPPGEKIRTYINVRNFD---DPHFIIMATAKGIVKKTSLEEYSHPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D  DE++       ++ I+L    G  VRFP S +R   GR ++GV+GI+L 
Sbjct: 633 TGINAITIDEGDELIEARLTDGDHQIILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + ++ ISM      D                                             
Sbjct: 692 EDERCISMVTTKRNDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ G+GKR+   D+R++ R  +G+      +  +IG LV +  VND 
Sbjct: 709 ---------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHE--KIGNLVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++  G +IR  V++IR+  R T GV +      +R+ +  R+ +S+     E
Sbjct: 758 DDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDDSATE 814


>gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 848

 Score =  884 bits (2283), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/902 (41%), Positives = 552/902 (61%), Gaps = 85/902 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M E   + +       I  ++I D+M+ +Y+ Y+++VI+ RA+PD RDGLKPVHRR+L+G
Sbjct: 1   MAEETENENNLSANGRIIPINIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M+ +GV   K Y K ARI G+V+GKYHPHG++++YDA+ R+AQDWS+R  L++GQGN+GS
Sbjct: 61  MLDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPAA RYTE RL+K A  +L D+ KDTVDF+ N+D S +EP VL  R PN+LVNG 
Sbjct: 121 IDGDPPAAMRYTEARLKKFAEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVVDG VA IDN +I++  LM+ I+GPDFPTG +I G  G+K 
Sbjct: 181 SGIAVGMATNMAPHNLSEVVDGTVAFIDNREIEISELMQYIKGPDFPTGGIIYGYNGVKE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A  TGRG +V+R  + IE T   RE I+VTEIPYQVNKA M+++ AELV EK+I  I+++
Sbjct: 241 ACETGRGRVVMRAKAEIETTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G+RVV ++KR A+A+V+LN LY+YT+LQ+ FSVN +AL   +P    L  ++ 
Sbjct: 301 RDESDREGFRVVYDIKRDANANVVLNNLYKYTALQTSFSVNNIALVKGRPMMMNLKDMIH 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV+RRTK+ L +A  RAH+L G  IA+ +LDEV+++IR S  PE AR  LM+
Sbjct: 361 EFVEHRHEVVIRRTKFELAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLME 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++Q RAIL++ L RLTGL RD I+ E N 
Sbjct: 421 R--------------------------FALSDLQARAILDMTLRRLTGLERDKIKEEYNE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I+   ++LS     + IIK ELL +KD+    RR+ IV    DM  ED I  E++V
Sbjct: 455 LMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDERRSIIVHSAEDMRMEDFIDDEEIV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH  YVKR PLS Y+ Q RGG+G  G   R+EDF   +   S H  +LFF+  G  +
Sbjct: 515 ITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREEDFTEHIITASAHNYMLFFTEAGRCF 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNV 657
             + + +P GS  +RG+AL NI+++ + E+I   +      D+    N +++  TK G +
Sbjct: 575 WLRAFEIPEGSRTSRGRALQNIINIPKDEKIKAYIKVINLKDQEYLENNFIIMCTKKGTI 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L  + +   +G  A+ ++  D+++        ++I++  + G+ +RF  S +R   
Sbjct: 635 KKTSLEAYSRPRANGINAININEGDQLIEACLTDGSSEIVMALRSGRAIRFNESTVRPM- 693

Query: 718 GRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR + GVRGI+LA + D+V+ M  V +                                 
Sbjct: 694 GRTATGVRGITLAHEKDEVVGMISVNNP-------------------------------- 721

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               E  +L VSEKG+GKRT   D+R++NR GKG++  +V+  +
Sbjct: 722 --------------------EVTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--D 759

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G LVA+  V D++ +++++  G +IR+ V ++R+  RAT+GV + +   ++ + S+ +
Sbjct: 760 KTGELVAIKDVTDSEDLMIINKSGIVIRIGVADLRVMGRATQGVRLINLKDNDEIASITK 819

Query: 897 IR 898
           + 
Sbjct: 820 VE 821



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 94/238 (39%), Gaps = 13/238 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             + ++  +  G +K+  L  Y   R  G   + + + + D + +  +    + ++    
Sbjct: 621 ENNFIIMCTKKGTIKKTSLEAYSRPRANG--INAININEGDQLIEACLTDGSSEIVMALR 678

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +      A G   +  ++L   +             +   + V+  ++ 
Sbjct: 679 SGRAIRFNESTVRPMGRTATG---VRGITLAHEKDEV----VGMISVNNPEVTVLVVSEK 731

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + D+   NR GK    ++  D   E+++++  T   D+++  K G  +R  ++
Sbjct: 732 GYGKRTDIEDYRVTNRGGKGVKTINVTDKTGELVAIKDVTDSEDLMIINKSGIVIRIGVA 791

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +RV  GR + GVR I+L   D++ S+  V   + +    I      S    + + + 
Sbjct: 792 DLRVM-GRATQGVRLINLKDNDEIASITKVEREEDEEITDIETEGEDSENTNIDTTEE 848


>gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
 gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328]
          Length = 882

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/905 (41%), Positives = 541/905 (59%), Gaps = 47/905 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL       +L D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+VDG VA+I NP+I    LM  I GPDFPTGA ILGR+GI+ AY TGRGSI +
Sbjct: 184 PPHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR+
Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A   V+LN LY+ T LQ+ F  NM+AL   KPE  TL   L  F+ FR 
Sbjct: 304 GMRIVVELRRDAYPRVVLNNLYKQTPLQTNFGANMLALVNGKPELLTLKRYLHVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + RRT+Y   KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL++R      
Sbjct: 364 DTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL+++L RLT L    I  E   L  +I +
Sbjct: 418 --------------------FGLSEPQADAILQMQLRRLTALEAQKIEQEHQELLAKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L I++QE   +K    TPRRT I     ++ED D I  E  ++ ++  G
Sbjct: 458 LNDILNRRERILEIVEQEAQEIKQRHGTPRRTEIELEESELEDTDLIANEKAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G+SG  M+++D V        H S++FF+  G  Y  K +++
Sbjct: 518 YIKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PIGS  ARG  ++ +L + + E+IT+++   E     N+ Y+V  TK G +++  LS F 
Sbjct: 578 PIGSRIARGVPIVQMLPIPRDEKITSLVAVGEFS---NDEYLVMLTKGGYIKKTALSAFN 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724
            I  +G IA+ L+  DE+  V +   ++ +++ ++LG  + F      +R   GR + GV
Sbjct: 635 NIRSNGIIAISLNEGDELRWVRSAKVDDSVIIGSRLGMAIHFHTDDKQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L   D++I M I+            ++     +      + EE  +   +   +  
Sbjct: 694 KAMKLKPDDELIGMDILPS----------FIVASIPKLGGEETEIEEEENTTVEEVDDTE 743

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             E    E++     IL ++ +G+GKR     FR+ NR+GKGI AT          +VA+
Sbjct: 744 SEEIATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVAL 803

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V++ D+++L++ +G +IR  ++ I   SR   GV +    K++ + +V  +  S   D
Sbjct: 804 QVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGEGD 863

Query: 905 EAEST 909
           + E  
Sbjct: 864 DTEVD 868


>gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A
 gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL]
 gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948]
 gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 887

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  ++EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
 gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413]
          Length = 872

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/904 (41%), Positives = 539/904 (59%), Gaps = 42/904 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYT
Sbjct: 64  KKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ   +  LL D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG VAVI NP+I    LM+ I GPDFPTGA ILG   IK AY TGRGSI +
Sbjct: 184 PPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQILGMGAIKEAYTTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV++IE        DRE I++TE+PYQ NKAA++EKIAELV EKRI  IAD+RDESDR 
Sbjct: 244 RGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  TL   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGEPQILTLKQFLNVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+++LD ++ +IR + +  TA+ EL+        
Sbjct: 364 ESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELIT------- 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  LSEVQ  AIL+++L RLT L  D IR E   L  +I +
Sbjct: 417 -------------------TYMLSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II+ E+  +K    TPRRT I     ++++ D I  E  ++ ++  G
Sbjct: 458 LQDILARRERILEIIETEITQIKTSFATPRRTVITHAEGEIDERDLIANEKAIILLTQQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G++   ++D+D +        H SVLFFS  G VY  K +++
Sbjct: 518 YIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  +RG  ++ +L + + E+IT+I+P  E     +  Y+V  TK GN+++ +L+ F 
Sbjct: 578 PVSSRTSRGTPIVQLLPIPKEEKITSIVPVDEFT---SEEYLVMLTKGGNIKKTELAAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGV 724
            I  +G IA+ L+  D++  V     E+ I++ ++LG  + F      +R   GR + GV
Sbjct: 635 NIRANGLIAISLEEGDQLRWVRRARVEDSIIIGSRLGMAIHFRCTHEQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD+++ M I+  A  D                + + D E             N
Sbjct: 694 KSMKLKKGDELVGMDILPAAILDTLNTE-----EPDIDDIETEDIETAVETTEVLETLEN 748

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +             ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +
Sbjct: 749 LEAVEVSSNASVGPWVLVITMGGYGKRVPVSQFRLQNRAGQGLMATKFKNRKTKDKLATL 808

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN +++I++V+++G +IR  VN I I SR+  GV +    +D+ +  V  +      +
Sbjct: 809 GIVNSDNEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDTGDE 868

Query: 905 EAES 908
           E   
Sbjct: 869 EEAE 872


>gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH]
 gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH]
          Length = 816

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/892 (41%), Positives = 551/892 (61%), Gaps = 87/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  VSI + +  SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+     Y K 
Sbjct: 2   QVIPVSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+Y+AL RMAQ +S+R+ LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEAR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++D  + +IDN D  L+ +++ ++GPDFPTG  I G++GI  AY TGRGSI IR   
Sbjct: 182 LEELIDALIYMIDNKDATLEDILQFVKGPDFPTGGTIFGKSGIIEAYKTGRGSIKIRAKH 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE   G++E IV+ E+P+QVNKA ++EKI++LV++K +  I+++RDESDR+G RVVIEL
Sbjct: 242 HIE-HKGNKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +++ILN LY++T +Q  F +NM+ +   +P+ F L  +L  F+  R+ VV+RRT 
Sbjct: 301 KKDAMSEIILNNLYKHTQMQVSFGINMLGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTI 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+  L+ R              
Sbjct: 361 YELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINR-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L++VQ +AIL++RLARLT L  + + NE   L  +I+    IL   
Sbjct: 407 ------------FELTDVQAQAILDMRLARLTSLEVEKLENEYKELMEKIEYLNSILKDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L G+IK ELL +K +  TPR T I E    ++ ED I  E+MVVT++H GYVKRVPL 
Sbjct: 455 NILNGVIKDELLEIKKKYPTPRLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLK 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGGKG+  + + ++DF+ D ++ ++H +++  +  G ++  KV+R+P GS  ++
Sbjct: 515 AYERQNRGGKGKKALTIYEDDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTSK 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+++L++ E+I TI+   + +    +  + F TK+G V+R  LS+F  I  +G  
Sbjct: 575 GKAIVNLINLDKDEKIQTIIKTEDFD---ESKSLAFFTKNGIVKRTNLSEFKNIRSTGVR 631

Query: 675 AMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           A+ +D  DE+++ +     + ++ + TK G  +RFP+  +R   GR + GV GI    +G
Sbjct: 632 AITIDEGDELVTAKIVEPGDKELFIVTKKGMAIRFPVDTVREM-GRTARGVTGIRFKIEG 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+    +                                                   
Sbjct: 691 DEVVGALALQD------------------------------------------------- 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              + Q ILT+SEKGFGKRT +  +R++NR GKG+ A  ++  N+ G LV V     +  
Sbjct: 702 ---ENQEILTLSEKGFGKRTEANLYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEKDHD 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++++  G +IRV ++ I    + T+GV +      ++VVS+ +    +  +
Sbjct: 757 LMVLTSSGKMIRVSIDSISKTGKNTQGVRVVKLDDGDKVVSLAKTPSEKEEE 808



 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 114/245 (46%), Gaps = 30/245 (12%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L + DE++ +   + +       K     RF ++ ++      +  +  + LA   ++
Sbjct: 378 IALANIDEVVEIIKKSND---TKEAKENLINRFELTDVQ------AQAILDMRLA---RL 425

Query: 736 ISMAI--VLHADADYDERICYMKHMSAQRRLISG-------DTEEITSLKNDSSVEGNIS 786
            S+ +  + +   +  E+I Y+  +     +++G       + ++       +++E +  
Sbjct: 426 TSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTPRLTNIEEDYD 485

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               ++L   E+ ++T++ +G+ KR     +   NR GKG +A  + + + I      + 
Sbjct: 486 AIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYEDDFIED---FYV 542

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            N +D +++++D+G L  + V  I   SR +KG   V + +  KDE++ +   I ++E  
Sbjct: 543 ANSHDTLMIITDRGQLHWLKVYRIPEGSRTSKGKAIVNLINLDKDEKIQT---IIKTEDF 599

Query: 904 DEAES 908
           DE++S
Sbjct: 600 DESKS 604


>gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius]
          Length = 878

 Score =  883 bits (2282), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/901 (43%), Positives = 562/901 (62%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ETPESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV+DG +++  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGS++
Sbjct: 183 IPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDFPTAGLILGKSGIRRAYETGRGSVI 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE   G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++EV
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPQLINLKQALYHYLEHQKEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++ IIR S   + A   L  R        
Sbjct: 363 VRRRTEYNLRKAKDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIAYIAELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL ++++EL  +K++    RRT I   G+  +EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S YRAQ RGG+G  G+   D+DFV+ L   STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDQVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N++ L+Q E I+T++   + +S  +  ++VF TK G ++R+ LS+F +
Sbjct: 577 ELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEED--FLVFVTKKGLIKRSALSNFNR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+K    DE+++V     E  IL+ T     +RF  + +R  + R + GV+GI
Sbjct: 635 INRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKEADVRAMS-RIAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L  GD+VI + +    + D                                        
Sbjct: 694 RLRDGDEVIGLDVADDDNQDK--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+EKG+GKRTS  D+R+SNR G G++   +++ N  G LV +  V
Sbjct: 715 ------------ILVVTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERN--GRLVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             ++ +++V+++G +IR+ V+ I +  R  +GV +    +++ V +V ++++     EA+
Sbjct: 761 EGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEAD 820

Query: 908 S 908
            
Sbjct: 821 E 821



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ED +V V+  G +KR  LS +    R GK    +  RD+D +  + +      +L
Sbjct: 607 DLDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKI--AIKFRDDDELIAVRLTDGEKHIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++   + + K   +   S  A   A +  + L  G+ +  +    +D        ++ 
Sbjct: 665 IGTAQASLIRFKEADVRAMSRIA---AGVKGIRLRDGDEVIGLDVADDDNQDK----ILV 717

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + D+        G    KL      ++ + T   + D+++ T  G  +R
Sbjct: 718 VTEKGYGKRTSIEDYRLSNRGGMGVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S I    GR + GVR I L +   V ++A V     D +         ++    +  
Sbjct: 778 MEVSNI-SVNGRMAQGVRLIRLDEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVV 836

Query: 768 DTEEITSLKNDSSVEGNISEER 789
           D        +  + E  +S ER
Sbjct: 837 DDVTPGDTIHTEAPEPEVSPER 858


>gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 835

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/893 (40%), Positives = 542/893 (60%), Gaps = 86/893 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++E++   I    I  EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   AEEQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSS 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++++Y+A+ RMAQD+S+R +L++G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  +L DL K+TVDF PNYDG  +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG  A+I NP+I    L++ ++GPDFPT  +++G +GI+ AY TGRG+
Sbjct: 182 TNIPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R  + IE+   ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G
Sbjct: 242 VTMRARATIEENG-NKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R  +  V+LN LY+ T +QS F +NM+AL   +P+   +  +L  ++  + E
Sbjct: 301 MRVVIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  L++R       
Sbjct: 361 VIRRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS  Q +AIL++RL RLTGL RD I  E   L  +I E 
Sbjct: 414 -------------------FALSYEQAQAILDMRLQRLTGLERDKIEAEYAELMKKIAEY 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    +L II  EL  +K+     RRT I     ++ DED I RED++++++H GY
Sbjct: 455 KAILADEQLVLNIISDELNEIKERFGDERRTEITVSDEEILDEDLIPREDVIISITHTGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ YR+Q+RGGKG  G+  ++ DFV  LF+ +TH  +LFF++ G VY+ K + +P
Sbjct: 515 IKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHLFVSNTHHYLLFFTNKGKVYRLKAYEIP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG  +IN++ + QGE I  ++P    +   +  Y+ FAT+ G V++  L D++ 
Sbjct: 575 DLSRTARGTPIINLIQIEQGETINAVIPVESFD---SESYLFFATRQGIVKKTPLDDYMN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G IA+ +   DE++ V+      +I++ T  G  +RF    +R   GR++ GV+GI
Sbjct: 632 IRKVGLIAISIREDDELIGVKLTDGNQEIVMGTAQGMSIRFSEQDVRSM-GRSATGVKGI 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L                                                      +   
Sbjct: 691 QL-----------------------------------------------------DDDDT 697

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               ++   E  +L V+ KG+GKRT   ++RI NR GKGI+  +V+  N  G +V++  V
Sbjct: 698 VIDMDVVNPENDVLIVTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKN--GPIVSLKVV 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +++ +++++  GTLIR  +  I    R T+GV + +T  D+ V +V R+  S
Sbjct: 756 LNDEDLMIMTALGTLIRTSMEGISTMGRNTQGVKLINTRDDDTVSTVTRVARS 808



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 96/244 (39%), Gaps = 15/244 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    E  +   +  G VK+ PL  Y   R+ G     + +R++D +  + +   +  ++
Sbjct: 604 ESFDSESYLFFATRQGIVKKTPLDDYMNIRKVG--LIAISIREDDELIGVKLTDGNQEIV 661

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G   +     +      A G   I +   +    +  + P  +         V+ 
Sbjct: 662 MGTAQGMSIRFSEQDVRSMGRSATGVKGIQLDDDDTVIDMDVVNPEND---------VLI 712

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVR 707
            T  G  +R  +S++   NR GK    L+  D+   I+S++    + D+++ T LG  +R
Sbjct: 713 VTAKGYGKRTPMSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTALGTLIR 772

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  I    GRN+ GV+ I+    D V ++  V  ++   +      +         + 
Sbjct: 773 TSMEGISTM-GRNTQGVKLINTRDDDTVSTVTRVARSEETDETFEEGEEFEGTAPDAGTE 831

Query: 768 DTEE 771
             EE
Sbjct: 832 PAEE 835


>gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A
 gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A
 gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A
 gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus]
 gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2]
 gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC 51811]
 gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189]
          Length = 887

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/897 (41%), Positives = 561/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D     + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus]
          Length = 889

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHENSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 108/273 (39%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   +  ++L +G+ +  +    E+        V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHENSVDE----VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E    +  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIESEETDDDGRI 866


>gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii]
 gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii]
          Length = 820

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 398/902 (44%), Positives = 560/902 (62%), Gaps = 87/902 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             ++ +  ++I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL GM +MG+  N+ 
Sbjct: 2   PPDERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+I GE+MG YHPHG++AIYD L RMAQ++++R +L++GQGN+GS+DGD  AA RY
Sbjct: 62  YRKSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL D+ K+TVDF PNYD S  EP+VL +R PN+LVNG GGIAVG ATNI
Sbjct: 122 TEARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV++G + +++NP++ +  LM+ I GPDFPT   I G +GIK+AY TGRG + +
Sbjct: 182 PTHNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGTSGIKDAYETGRGLLTV 241

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    IE     DRE++++TEIPYQVNK+ ++EKIA+L +E R+  I+D+RDESDR+G R
Sbjct: 242 RAKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR     V+LN LY+++ LQ+ F VNM+AL   +PE   L  IL+AFV  R EVV
Sbjct: 302 VVIELKRNEIPLVVLNNLYKHSQLQTTFGVNMLALVNNRPEVLNLKRILEAFVEHRREVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT Y L KA +RAH+L GL IA+ NLD V+ +IR S +P+ AR  LMQ+         
Sbjct: 362 VRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AILE+RL RLT L RD +  E   +   I+    
Sbjct: 413 -----------------FRLSEIQANAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L S + +  II+ EL  +K++    RRT+IV+   ++  ED I  E++VVT+SH GY+K
Sbjct: 456 VLGSEALVRKIIRDELTEIKEKYQDERRTKIVKEEAELTLEDLIAEEEVVVTISHAGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +++YRAQRRGGKG+  + +++EDFV  LF  STH S+LFF+  G VY  KV  +P  
Sbjct: 516 RNAVTLYRAQRRGGKGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+GKAL+N+L+L++ E++T  +P  E      + +V+  TK G +++ +LS +    
Sbjct: 576 SRAAKGKALVNLLALSKDEKVTATLPVKEYR---ADRFVIMGTKQGVIKKTELSAYSNPR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD+ D+++ V+    + +ILL TK G  +RF    +R   GR + GVRGI+L
Sbjct: 633 QGGIIALSLDAGDKLIGVDLTDGQREILLGTKQGITIRFKEEDVRAM-GRTAHGVRGITL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+VI M  +                                                
Sbjct: 692 EPGDEVIGMETITPDSTTA----------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ILTV+E G+GKRT   ++R+  R GKGI +   ++ N  G  V    V D
Sbjct: 711 ----------ILTVTEGGYGKRTPVNEYRVQGRGGKGIISVKTTERN--GPAVGFLQVRD 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIV--DEA 906
            D+I+L++ +G ++R  V++IR   R T+GV +     D +RVV+V R+ E E    +E 
Sbjct: 759 EDEIMLMAAQGKVLRCKVDDIREIGRNTQGVRLLDMDGDEDRVVAVVRLVEREEGVPEEG 818

Query: 907 ES 908
           ES
Sbjct: 819 ES 820


>gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 849

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 547/895 (61%), Gaps = 86/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE+    R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR+G R
Sbjct: 242 VRAKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYIDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLM----------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 410 ---------------DEFNLSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LLG+IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLGVIKDELLEIKAKYGDERRTDIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +      + Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEADEKIQTVLTITD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R   GR + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHM-GRTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +  +                                            
Sbjct: 691 KDDDIAVCMDIAVDEE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   +++I +R G G+    +S+  + G LV       
Sbjct: 707 ---------ELLVISENGFGKRTPVSEYKIQHRGGVGLITYKISE--KTGKLVGATVCKV 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +D+++L++  G  IR+ V++I   SRA  GV +  T ++E++V++ +I +S+  D
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRAAMGVTLMRTNEEEKIVAIAKILKSDDED 810


>gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803]
 gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803]
          Length = 843

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/903 (41%), Positives = 564/903 (62%), Gaps = 86/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++++YD + RMAQ WS+R +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L DL K+TVD + N+D S  EPVV+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+N DID+D L++ I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             SH+E+    RE +VVTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G RVV
Sbjct: 243 AKSHMEEIG-GREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKR A  +++LN L+++T+LQS FSVN +AL   +PE   L  ++  FV  R +VVVR
Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGRPEMLNLKDLIYHFVEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+ +IR S N E AR +L++R           
Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I++   IL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + +IK ELL VK++    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDERRSQIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+ G   R+EDF+  LF+ + H  +LFF+  G  Y  +V+ +P GS 
Sbjct: 516 SLSEYKTQNRGGVGQKGSNTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++++  +++   +   +  DE   N+ +V+ ATK G V++ +L  + +  
Sbjct: 576 ASKGRAIQNLINIDPEDKVNAFICTQDLKDEKYVNDHFVIMATKKGQVKKTRLEKYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + ++L  + G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGNSQVMLGLRSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   ++D                                         
Sbjct: 695 ADDKDEVVGMIAVNDFESD----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V+
Sbjct: 714 -----------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGQLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-DEAE 907
           D D +++++  G +IR+ V ++R+  RAT+GV + +   ++ + +V ++   E   D  E
Sbjct: 761 DIDDLMIINKSGIVIRMAVEDLRVMGRATQGVRLINLKGNDAIAAVAKVLHDEDDLDSME 820

Query: 908 STE 910
             E
Sbjct: 821 DAE 823


>gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
 gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635]
          Length = 887

 Score =  883 bits (2281), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTAHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSIDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 98/265 (36%), Gaps = 13/265 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTAHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSIDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V ++A V     D                    
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTVSEDGTEQQHE 836

Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792
                 +  N    E   SEE  ++
Sbjct: 837 AVVNDETPGNAIHTEVIESEETDED 861


>gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A
          Length = 889

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
 gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771]
          Length = 811

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  +++ DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRI++ M  +G+  +K + KC
Sbjct: 5   KVVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+ KYHPHG+ A+YDAL RMAQ +S+R  L++G GNFGSVDGD  AA RYTE R
Sbjct: 65  AHIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L D+ K+TVDF PNYD S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 MTKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DG + ++DNP+ D   LM+ ++GPDFPT   I+G  GI +AY TGRGSI IR  +
Sbjct: 185 LAEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIMGVQGIISAYTTGRGSIKIRAQA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+ SG + +IVV EIPYQVNKA ++EKIAELVR+K+I  I+DLRDESDR+G R+VIEL
Sbjct: 245 EIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR     ++LNQLY++T +Q  F V M+AL   +P    L  +L  ++  ++++++RRT 
Sbjct: 305 KRDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGRPNVLNLRDMLYYYLEHQKDIIIRRTT 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA  RAH++ GL IA+ANLDEV+  IR S   E A++ L+++              
Sbjct: 365 FDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEK-------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q +AILE+RL RLTGL  + +  E   L  +I     ILS  
Sbjct: 411 ------------FLLTEIQAQAILEMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L IIK ELL ++ +    RRT I +     + ED I  EDMV+T++  GY+KR+PL 
Sbjct: 459 GKILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLD 518

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGG+G S + ++++DF+  LFI STH  +LFF++ G VY+ KV  +P    Q++
Sbjct: 519 TYRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSK 578

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A+IN+L +   E++TT++P  E      + ++   TK+G V++  L++F    R G I
Sbjct: 579 GTAIINLLFVGTEEKVTTVIPVKEFN---KDEFLFMCTKNGIVKKTSLNEFDTSRRDGII 635

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  D+++ V     + +I++ T+ G  +RF    +R   GR + GVRGI L +GD 
Sbjct: 636 ALTLDDHDDLVDVRLTNGQEEIIIGTQKGLAIRFSEDDVRKL-GRIAKGVRGIGLIEGDF 694

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M  V                                                     
Sbjct: 695 VVGMDTVR---------------------------------------------------- 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E  +L V++ GFGK+T   ++R+  R GKGI    +S  N  G +V++  V  +++I+
Sbjct: 703 -NEGDLLVVTKNGFGKKTPISEYRLQTRGGKGIINVKISDRN--GPVVSLLVVKPDEEIM 759

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++S +G +IR+ VNEI    RAT+GV +   +  + V ++ ++      D
Sbjct: 760 MLSSEGIIIRMKVNEISTTGRATQGVTLMKLSSGDSVATIAKVNAEVDAD 809



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 59/389 (15%), Positives = 137/389 (35%), Gaps = 32/389 (8%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIKDLID 432
            + RD    +  L   +++  +++ II+             RR ++     A D++DLI 
Sbjct: 439 QEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYADKRRTVISDEDTAFDVEDLIA 498

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             D       +     L  + T    +     ++ +G  +     +         +   +
Sbjct: 499 EEDMVITITRNGYIKRL-PLDTYRSQKRGGRGISAMGVKEKDFLKHLFITSTHHYILFFT 557

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSH 544
           ++ ++  +   E+     +    + T I+  L    +E            +++ +   + 
Sbjct: 558 NKGKVYRLKVHEIPEAGRQ---SKGTAIINLLFVGTEEKVTTVIPVKEFNKDEFLFMCTK 614

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G VK+  L+ +   RR G     +   D+     L   +    ++  +  G   +    
Sbjct: 615 NGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRL--TNGQEEIIIGTQKGLAIRFSED 672

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +      A+G   I ++  +              ++  N   ++  TK+G  ++  +S+
Sbjct: 673 DVRKLGRIAKGVRGIGLIEGD---------FVVGMDTVRNEGDLLVVTKNGFGKKTPISE 723

Query: 665 FIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +    R GK  + +   D    V        + +I++ +  G  +R  ++ I    GR +
Sbjct: 724 YRLQTRGGKGIINVKISDRNGPVVSLLVVKPDEEIMMLSSEGIIIRMKVNEI-STTGRAT 782

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDE 750
            GV  + L+ GD V ++A V        E
Sbjct: 783 QGVTLMKLSSGDSVATIAKVNAEVDADVE 811


>gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
 gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1]
 gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A
 gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315]
 gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299]
 gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115]
 gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98]
 gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117]
          Length = 889

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130]
 gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193]
          Length = 889

 Score =  882 bits (2280), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159]
 gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159]
          Length = 836

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/888 (42%), Positives = 531/888 (59%), Gaps = 86/888 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E++   +  +SI +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+GM +MG+  N 
Sbjct: 8   EQQIGRVRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNA 67

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K A I GEV+  YHPHG++A+YDAL RM Q +++R  LI+GQGNFGSVDGD  AA R
Sbjct: 68  KYRKSAGIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMR 127

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LL D+ K TVDF PNYD S +EP VL AR PN+LVNG  GIAVGMATN
Sbjct: 128 YTEARLAPIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATN 187

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEVVD  V +IDNP+  ++ L+E + GPDFPTG +ILGR GI  AYATGRG IV
Sbjct: 188 IPPHNLGEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIILGREGILAAYATGRGRIV 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+T   R  I+VTE+PYQVNKAA++E+IAELV+  R+  I DLRDESDR G R
Sbjct: 248 VRARAHIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           +VIELKR A    +LN L+++T LQ+ F VNM+AL     P   TL  +L+ ++  R++V
Sbjct: 308 IVIELKRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQV 367

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L +A  RAHVL GL IA+ +LDEV+  IR + + E AR++LM R        
Sbjct: 368 IRRRTEFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLMAR-------- 419

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL+++L RL  L R  I +E   L   I E  
Sbjct: 420 ------------------FNLTEIQANAILDMQLRRLAALERQKIEDEYRELLARIAELR 461

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+  +++L ++++ELL +K+    PRRT+I E   ++ DED + R D++VT++  GYV
Sbjct: 462 ALLADAAKILAVVRKELLELKERYGDPRRTQIQEASSEISDEDLVPRVDVIVTLTSRGYV 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     +R Q RGG+G +G+ +RDED +  + + STH S+LFF++ G V++   + LP 
Sbjct: 522 KRSTNGHFRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPD 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG  ++N L+L  GE +TT++P  +  +     ++ F T+ G V+R +L +F  +
Sbjct: 582 VGRNARGLPIVNFLNLQPGEEVTTLLPVRDFST---ATFLFFCTRQGRVKRVRLEEFSNV 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IAM LD+ DE+  V   +  ++++L T  GQ +RFP   +R   GR + GV G+ 
Sbjct: 639 RASGLIAMSLDAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPM-GRQAGGVIGVR 697

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD VI+  +V                                               
Sbjct: 698 LDEGDAVIAAEVVRPEGD------------------------------------------ 715

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L VS+ G+GKRTS  +FR   R G G+ A  V+     G + A     
Sbjct: 716 -----------LLLVSQYGYGKRTSLDEFRTQGRGGSGVIAMKVTPR--TGHVAAATVAR 762

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + D ++LVS +G +I VPV +I    R T+GV +    + + V SV  
Sbjct: 763 EEDTVVLVSRRGRMILVPVAQIPRQGRHTQGVSVMRLQEGDEVASVAV 810



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 91/260 (35%), Gaps = 61/260 (23%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +V  T  G V+R+    F   +R   G   M +   D I  +   +  + +L  T  G+ 
Sbjct: 512 IVTLTSRGYVKRSTNGHFRVQHRGGRGVNGMAVRDEDSIQHIVLASTHDSLLFFTNRGRV 571

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            + P   +    GRN+ G   V  ++L  G++V ++  V                     
Sbjct: 572 FQLPTYEL-PDVGRNARGLPIVNFLNLQPGEEVTTLLPVRDFSTAT-------------- 616

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                               F+   + +G  KR    +F  SN 
Sbjct: 617 ------------------------------------FLFFCTRQGRVKRVRLEEF--SNV 638

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G+ A  +   +    L  V P + +D++ILV+  G  IR P +++R   R   GV+ 
Sbjct: 639 RASGLIAMSL---DAGDELAWVRPTSGSDEVILVTAHGQAIRFPEDDVRPMGRQAGGVIG 695

Query: 883 FSTAKDERVVSVERIRESEI 902
               + + V++ E +R    
Sbjct: 696 VRLDEGDAVIAAEVVRPEGD 715


>gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
 gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345]
          Length = 865

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/916 (40%), Positives = 539/916 (58%), Gaps = 61/916 (6%)

Query: 1   MTEH-------IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +          S D    + I  ++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MADEQNPLLPLPPSGDGGNPQNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M  MG+  N+K+VKCA++ GEV+GKYHPHG++A+YDA+ RMAQD+SLR  L++G
Sbjct: 61  RRILYAMHDMGLLHNRKHVKCAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGSVDGDPPAA RYTE R+   A  LL D+ KDTVDF  N+D +  EP++L  + PN
Sbjct: 121 QGNFGSVDGDPPAAYRYTEARMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +L+NG  GIAVGMATNIP HNL E+VD C+ +++NP   LD +++ ++GPDFPTG  I G
Sbjct: 181 LLINGSNGIAVGMATNIPPHNLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFIHG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           + GIKNAY  GRG  ++R    +E    +++ IVVTEIPYQVNK+ +++KIA+LV +K I
Sbjct: 241 KGGIKNAYQNGRGRFMMRAKVAVE-HLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTI 299

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            +I+D+RDESDR G R+VIELKR A  +++LNQLY++T +Q  FS+  +A+   +P+   
Sbjct: 300 DEISDVRDESDRDGMRIVIELKRSAQPEIVLNQLYKHTQMQESFSMIFLAVVNNQPKEMG 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L+  L  F+  R +VV RRT YLL KA+DR H+L G  +A+ +LD V+ IIR S N   A
Sbjct: 360 LVQALNHFIDHRIDVVRRRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L+               I+ +      D     S  Q  AILEL+L RLT L  D+I
Sbjct: 420 RENLVAYFTGKKIT------INTTGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEI 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +EL  +   I E   IL+S  +L  +I +EL  ++ +    RRT I +   ++  ED I
Sbjct: 474 TSELKDVRERIAEYESILASEKKLRSVIVKELEQIRKDYGDERRTIIQDEAAELSLEDLI 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E + VTVSH GY+KR P+S YR QRRGG GR G+  RDEDFV  +F+ STH  +L F+
Sbjct: 534 ADEQVAVTVSHSGYLKRTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFT 593

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY  KV+ +P  +   +GK + N+++L  GE +  I+P    E    + YV F T+
Sbjct: 594 NTGRVYWLKVYEVPEIAAAGKGKHIGNLVALQPGESVRAILPVKSLE--EESRYVFFTTR 651

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L DF  +   G IA+ +D  DE+++ +       + L +  G  +RF  + +
Sbjct: 652 KGTVKKTALVDFSNVMARGIIAIGIDKDDELVAAQLTDSNQIVFLASHEGLAIRFDEADV 711

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R+  GR + GVRG+ +   D ++ MAI                +                
Sbjct: 712 RIM-GRPAYGVRGMDIGAKDYIVGMAITPKERKKGKNGGADTAN---------------- 754

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     IL+V+E G+GKRT   ++R+  R GKG+     +
Sbjct: 755 -------------------------LILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTT 789

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  G +VA+  V ++ + +++S  G +IR   + IR A R+T+GV +      ++V +
Sbjct: 790 ERN--GKVVAIMLVTEDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAA 847

Query: 894 VERIRESEIVDEAEST 909
              I + E   EAE T
Sbjct: 848 AVVIPDDEKA-EAEPT 862


>gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis]
 gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33]
 gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33]
 gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84]
 gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407]
 gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7]
 gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1]
 gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14]
          Length = 814

 Score =  882 bits (2279), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/897 (41%), Positives = 561/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D     + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNGEAKIMTFALVDAAEIKEEKE 814


>gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
 gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244]
          Length = 909

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/898 (41%), Positives = 539/898 (60%), Gaps = 46/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGSD-------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                       LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L   E IT I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L+ F  I  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A                   S    +   + E   S  ND 
Sbjct: 720 TAKGVRGMR-------VSFA-------------------SNTIDVEDAEVENDDSDDNDD 753

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S + N+       +  +   +L     G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 754 SSDSNVVSRIVSLVVPETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--G 811

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            L++   +++  +++L+SD GTL+R    E+    R  +GV +   +  E +V V  I
Sbjct: 812 ELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVVSI 869



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/441 (14%), Positives = 146/441 (33%), Gaps = 39/441 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +  A     L         +                ++Q+  +A   + +   +D 
Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDF 531

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
               +  +  + L+  QT       L+      R    ++  +    +I + L + S+ +
Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHA 591

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L       +      + P+ +R  +G   +        E +   +             
Sbjct: 592 TVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVFM 651

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VKRV L+ +   R  G     + + +ED +  + I   +  ++ FS+ G   + 
Sbjct: 652 ATASGTVKRVELAQFSNIRANG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709

Query: 602 KVWRLPIGSPQARG------KALINILSLNQGERITTIMPFPEDESS------------W 643
               +      A+G          N + +   E         +D S              
Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVP 769

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTT 700
               V+ A  +G  +R  + DF    R   G IA+K      E++S  +  +  +++L +
Sbjct: 770 ETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISAVSIDETKELMLIS 829

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  VR   + +    GRN+ GVR I L+  + ++ +  +   + D +         + 
Sbjct: 830 DGGTLVRTRAAEV-ATTGRNAQGVRLIRLSDAETLVGVVSIEAVEEDEELETIEQSVENT 888

Query: 761 QRRLISGDTEEITSLKNDSSV 781
           +   ++ +   +    +    
Sbjct: 889 ELDAVNSEEALVEPKDDTPEA 909


>gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
 gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205]
          Length = 910

 Score =  882 bits (2278), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/898 (41%), Positives = 530/898 (59%), Gaps = 45/898 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMQKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD++G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L+ +T LQ+ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALLE 423

Query: 433 LIDDSSYTIGSD-------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                       LS  Q  AILELRL RLTGL +D +  E   
Sbjct: 424 KAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFCREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y+AQRRGG+G+S   M+D+D +  L + S H +VL F+++G VY
Sbjct: 544 LTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  A+G+ ++N+L L   E IT I+P  E      N YV  AT  G V+R
Sbjct: 604 RLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFP---ENHYVFMATASGTVKR 660

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L  F  +  +G  A++L+  D ++ V        I+L +  G+ +RF  + +R   GR
Sbjct: 661 VELEQFSNVRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GR 719

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+        +S A       D +                         +  ++
Sbjct: 720 TAKGVRGMR-------VSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVVPET 772

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L     G+GKRT   DF    R GKG+ A   S+ N  G
Sbjct: 773 GE------------------VLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--G 812

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            L++   +++  +++L+SD GTL+R    E+    R  +GV +   +  E +V V  I
Sbjct: 813 ELISAVSIDETKELMLISDGGTLVRTRAAEVATTGRNAQGVRLIRLSDAETLVGVVSI 870



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/442 (14%), Positives = 143/442 (32%), Gaps = 40/442 (9%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + +  A     L         +                ++Q+  +A   + +   +D 
Sbjct: 472 LEQDKLHAEYTEILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDF 531

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
               +  +  + L+  QT       L+      R    ++  +    +I + L + S+ +
Sbjct: 532 CREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHA 591

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L       +      + P+ +R  +G   +        E +   +             
Sbjct: 592 TVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLEANETITAILPLTEFPENHYVFM 651

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ FS+ G   + 
Sbjct: 652 ATASGTVKRVELEQFSNVRSNG--LRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRF 709

Query: 602 KVWRLPIGSPQARG------KALINILSLNQGE-------------RITTIMPFPEDESS 642
               +      A+G          N + +   E                 +         
Sbjct: 710 AETDVRAMGRTAKGVRGMRVSFASNTIDVEDAEVENDDSDDNDDSSDSNVVSRIVSLVVV 769

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699
                V+ A  +G  +R  + DF    R   G IA+K      E++S  +  +  +++L 
Sbjct: 770 PETGEVLCACANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELISAVSIDETKELMLI 829

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  VR   + +    GRN+ GVR I L+  + ++ +  +   + D +         +
Sbjct: 830 SDGGTLVRTRAAEV-ATTGRNAQGVRLIRLSDAETLVGVVSIEAVEEDEELETIEQSVEN 888

Query: 760 AQRRLISGDTEEITSLKNDSSV 781
            +   ++ +   +    +    
Sbjct: 889 TELDAVNSEEALVEPKDDTPEA 910


>gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613]
          Length = 819

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/899 (40%), Positives = 552/899 (61%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +IDN D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNK+ ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   +     +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLGDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I++E    E
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDIIEEEILNE 815


>gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405]
 gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360]
 gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20]
 gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313]
          Length = 827

 Score =  881 bits (2277), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/903 (43%), Positives = 571/903 (63%), Gaps = 94/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      + +++ I  V+I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSDTK----DVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G   +K Y KCA   GEV+GKYHPHG+AA+YD+L RMAQ++SLR   I+G GNFGS+
Sbjct: 57  YGLGFTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE RL K +  +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  
Sbjct: 117 DGDPPAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + VID+P++ LD LM+II+GPDFPT  +I+G+ GI++A
Sbjct: 177 GIAVGMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIVGKQGIRDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATG+G I++R V+ IE+  G++++IVVTE+PYQVNKA ++E+IAELV+EKRI  I+DLR
Sbjct: 237 YATGKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLI 355
           DESD+ G R+VIELK+ A+A+V+LNQLY+ T +Q  F+VNMVAL       ++P    L 
Sbjct: 297 DESDKDGMRIVIELKKDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLR 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +  ++  +E+V+VRRTK+ L+KA  RAH+L GL IA+ NLDEV+ IIR S N   A+ 
Sbjct: 357 QAIDYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKE 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+QR                             SE Q +AI+++RL RLT L R+ I N
Sbjct: 417 ALIQR--------------------------FGFSEKQAQAIVDMRLGRLTALEREKIDN 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  EIK   D+L+++S +L IIK+EL  +K +    RRT+I+    ++E ED I  
Sbjct: 451 EYKELLKEIKYYKDVLANKSMVLDIIKKELEEIKQKYGDERRTKIIPDEDEIEIEDLIEV 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E+ VVT++H GY+KR+P S Y++Q+RGGKG  G+  R+EDFV  LFI STH  +LFF++ 
Sbjct: 511 EENVVTLTHFGYIKRLPTSTYKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P    QA+G A++N+L L+Q E+ITT++P  E +     LY+  ATKHG
Sbjct: 571 GKVYRLKTYEIPEAGRQAKGTAIVNLLQLDQNEKITTVIPISEYK---EGLYLFMATKHG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L +F  I + G  A+ L   DE++ V       +ILL T+ G  +RF    +R 
Sbjct: 628 IVKKTDLMEFDNIRKGGLTAVSLRENDELIDVRLTDGTKNILLVTRNGMSIRFNEKDVRP 687

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV+GI+L + D+V+ M+                                    
Sbjct: 688 L-GRAAQGVKGITLEEDDEVVGMSA----------------------------------- 711

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                              ++   +L V+E+GFGKRT   ++++  R GKGI    V++ 
Sbjct: 712 ------------------DIENASVLVVTERGFGKRTELDEYKVQIRGGKGILTYRVTE- 752

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +  +  V+++D ++++S  G++IR+   +I +  RAT+GV +    +   VVSV 
Sbjct: 753 -KTGKVAGMKLVSEDDDVMMISSDGSIIRIKAKDISLLGRATQGVTLMRMDEGVSVVSVA 811

Query: 896 RIR 898
           RI 
Sbjct: 812 RIV 814


>gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 865

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/909 (41%), Positives = 553/909 (60%), Gaps = 88/909 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  IS        I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MSDQPISGGT----NIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV +NK Y K ARI GEV+GKYHPHG++++YD + RMAQ+WSLR  +++GQGNFGSV
Sbjct: 57  EDLGVHYNKAYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL++ A  +L D+ KDTVDF+PN+D S QEP VL ++ PN+L+NG  
Sbjct: 117 DGDSPAAMRYTEARLKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HN+ EV+DG +A IDN DI +  LM  ++GPDFPTGA I G  GI++A
Sbjct: 177 GIAVGMATNMAPHNITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIYGYQGIRSA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  S IE TS  +EQI+V+EIPY VNKAAM+EKIA +V EK+I  I+D+R
Sbjct: 237 FETGRGRIVLRSRSTIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+V +LKR A A+V+LN L++Y+ LQS FSVN V L   +P    L  ++  
Sbjct: 297 DESDREGMRIVFDLKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGRPMTLNLKEMIMY 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT++ LN+A  RAH+L G  IA+ +LDEV+++IR S +PE AR  LM  
Sbjct: 357 FVEHRHEVVTRRTQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMT- 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +SE+Q +A+L+LRL RLTG+ RD I  E   +
Sbjct: 416 -------------------------NFGMSEIQAKAVLDLRLQRLTGMERDKIIKEYEEI 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I    +IL+S+   + IIKQEL  +K+     RR+ IV    D+  ED I  E MV+
Sbjct: 451 MALINRLKEILASKELRMEIIKQELDEMKERYGDKRRSDIVHASDDINIEDMIPEEQMVI 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR  LS YR Q RGG G  G   ++ DF   LF+ STH  +LFF+  G V+ 
Sbjct: 511 TISHEGYIKRTALSEYRTQGRGGVGSKGAGSKESDFTEHLFVASTHNYLLFFTEYGKVFW 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            KV+ +P G    +G+A+ N++ +  G+++ T++      D+   NN Y+V  T+ G ++
Sbjct: 571 LKVYEIPEGGKTTKGRAIQNVIQIEPGDKVRTVINVKTLTDDDYINNNYLVMCTEQGVIK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +    G  A+ +   D +L V+  +  +++++  + G+ +RF  S +R   G
Sbjct: 631 KTTLEAYSRPRSGGINAITIHEGDRLLDVKMTSGSDELVIALRSGRAIRFNESKVRPM-G 689

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GV+G++LA   D V+ +  V   D                                
Sbjct: 690 RTAAGVKGVTLAHDKDVVVGLVAVSSPDTT------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKR+   D+R++NR GKG++  ++S+  +
Sbjct: 720 ----------------------LLVVSEKGYGKRSDIEDYRVTNRGGKGVKTLNISE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV++  VND  QI++++  G  IR+ V+++R+  RAT+GV +      + + SV + 
Sbjct: 756 TGDLVSILGVNDQYQIMIINKSGITIRMAVSDLRVMGRATQGVRLIKIQDGDSIASVAKF 815

Query: 898 RESEIVDEA 906
             ++I+DE 
Sbjct: 816 EFTDIIDEE 824



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 103/265 (38%), Gaps = 15/265 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D  +  + +V  +  G +K+  L  Y   R GG   + + + + D + D+ + S    ++
Sbjct: 612 DDYINNNYLVMCTEQGVIKKTTLEAYSRPRSGG--INAITIHEGDRLLDVKMTSGSDELV 669

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +    ++      A   A +  ++L   + +           S  +  ++ 
Sbjct: 670 IALRSGRAIRFNESKVRPMGRTA---AGVKGVTLAHDKDVV----VGLVAVSSPDTTLLV 722

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ G  +R+ + D+   NR GK    L     + D ++S+     +  I++  K G  +
Sbjct: 723 VSEKGYGKRSDIEDYRVTNRGGKGVKTLNISEKTGD-LVSILGVNDQYQIMIINKSGITI 781

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  +S +RV  GR + GVR I +  GD + S+A     D   +E     K       +  
Sbjct: 782 RMAVSDLRVM-GRATQGVRLIKIQDGDSIASVAKFEFTDIIDEEGGELAKPDLGDVIVAE 840

Query: 767 GDTEEITSLKNDSSVEGNISEERCQ 791
               +    + +     + +EE  +
Sbjct: 841 EGAADEAEDETEEDAAEDSTEESPE 865


>gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501]
 gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501]
          Length = 848

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/891 (42%), Positives = 550/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV     +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + R+AQDWS+R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ K+TVD + N+D S +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A ID+ DI ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIYGYDGVKEAFETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE IVVTEIPYQVNKA M++K  +L+ EK+I  IA +RDES+R+G R+V
Sbjct: 243 AKATFEEVQ-GRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+Y++LQS FSVN +AL G +PE   L  ++  FV  R +VVVR
Sbjct: 302 YVLKRDAIPNIVLNMLYKYSALQSSFSVNNIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +RAH+L GL IA  N+DEV+ IIR S N E AR  L++R           
Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSEVQ RAI+E+RL +LTGL +D +R+E   +   I++  DIL
Sbjct: 411 ---------------FELSEVQARAIVEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + IIK EL  V+D+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 AREERRMEIIKDELREVRDKYGDDRRSEINYAGGDLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  Y  +V+ +P GS 
Sbjct: 516 PLTEYKTQHRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   N+ +V+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEEYVNSHFVIMATKKGVVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ +   DE+L     T  + I L  K G+ +RF  S  R   GR++ GVRGI+L
Sbjct: 636 QNGIIAIGIREGDELLEARLTTGSSQIFLGLKSGKAIRFEESKTRPM-GRSASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V   D D                                         
Sbjct: 695 ADDNDEVIGMVSVHDFDED----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR+S  D+RI+NR GKG++   +SK  + G LVA+  V+
Sbjct: 714 -----------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISISK--KTGGLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D+D +++++  G  IR+ V ++R   RAT+GV + +   ++ + +V ++ +
Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRTMGRATQGVRLINLKDNDSIAAVAKVMK 811


>gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/897 (41%), Positives = 560/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS  M+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFTMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D     + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132]
 gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
 gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A
 gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765]
 gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754]
          Length = 887

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  ++EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
 gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           lugdunensis M23590]
          Length = 894

 Score =  881 bits (2276), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/900 (42%), Positives = 549/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y
Sbjct: 5   PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R
Sbjct: 185 PHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
             + IE+  G R++IVVTEIPYQVNKA M+EKIAELVR+K++  I DLRDE+  R G RV
Sbjct: 245 ARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++++ A+A+VILN LY+ T LQ+ F  NM+AL   +P+   L   L  ++  ++ VV 
Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R          
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q +AIL++RL RLTGL RD I  E N L   I E   I
Sbjct: 415 ----------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    LL +++ EL  +K+     RRT I   G+ ++EDED I  E +V+T+SH  Y+K
Sbjct: 459 LADEEVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  
Sbjct: 519 RLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q++G  ++N + L   E I+T++   + E      Y++FATK+G V+R+ LS+F  IN
Sbjct: 579 SRQSKGIPVVNAIELANDESISTMIAVNDLE--SEGNYLIFATKNGIVKRSALSNFSHIN 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++GKIA+     DE+++V     + DIL+ T     +RF  +++R   GR + GV+GI+L
Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD V+ + +                                                 
Sbjct: 696 REGDTVVGLDVAHS---------------------------------------------- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V  
Sbjct: 710 -----ESEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTG 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++V++ G +IR+ V +I    RA +GV +     ++ V +V +++     DE    
Sbjct: 763 EEDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDEQSEA 822


>gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
 gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3]
          Length = 830

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/891 (42%), Positives = 553/891 (62%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE       +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M ++  EWNK
Sbjct: 2   EETAVRHEEISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+S+R +L++GQGNFGSVDGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+QK AH +L+D+ K+TVD   NYD S  EP+VL +R P +L+NG  GIAVGMATN
Sbjct: 122 YTEVRMQKLAHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV D   A+IDNPD+ ++ALM+ + GPDFPT  +I G  GI   YATGRG I 
Sbjct: 182 IPPHNLSEVADAITALIDNPDMSVEALMQHVPGPDFPTCGIIHGTDGIAEGYATGRGKIR 241

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG   +EK   D  E IVV E+PYQVNKA ++EK+AELV++K I  I  +RDESD++G 
Sbjct: 242 VRGRVFVEKGKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I LKR   ADV++NQLY++T L++ F +NM+A+   +PE  TL  IL+ F+  R+E+
Sbjct: 302 RIAIGLKRNQFADVVINQLYKHTQLENTFGINMLAVVNNRPELLTLKEILEYFILHRKEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L KA +RAH+L GL IA+ NLDEVV +IR S +P  AR  LM++        
Sbjct: 362 IVRRTRFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQ-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q +AIL++RL +LTGL R+ I  E      +I    
Sbjct: 414 ------------------FGLTQIQAQAILDMRLQKLTGLEREKIIEEYKETLKQIAWFN 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S   +L +IK+EL  +K E    RRT+I+    ++  ED I RE+MVVTVS  GY+
Sbjct: 456 EILGSERIVLDLIKKELADLKAEFGDERRTQIMGQKKEILLEDMIAREEMVVTVSRAGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+++YR QRRGG+G++ +  R++DFV  LF+ S+H + LFF++ G V+  KV+ +P 
Sbjct: 516 KRNPITLYRKQRRGGRGKTAMGTREDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               +RG A++N+L+ N+GE + T++  PE       L+V+ AT+ G V++  + D+ + 
Sbjct: 576 AGRASRGTAIVNLLNFNEGEDLATVLSVPEFS---PGLFVLMATRKGMVKKTDIMDYSRP 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+ L   DE+++V       ++ L ++ G+ VRF  S +R   GR + GV+G++
Sbjct: 633 RSGGLIALGLADGDELIAVRITDGSWNVFLGSQNGKSVRFLESDVRPM-GRLARGVKGMT 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V+ M ++ H +                                           
Sbjct: 692 LEKDDHVVGMEVLSHGNT------------------------------------------ 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++T++E G+GKRT   ++ ++ R GKG+     +K N  G +VA+  V 
Sbjct: 710 -----------LMTITENGYGKRTEIDEYPVNRRGGKGVITIKTTKRN--GKVVAILLVE 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++D++++++D+G LIR+PV  + + SR T+GV +    + E V    R+ E
Sbjct: 757 NDDELMIMTDRGKLIRIPVGGVSVISRNTQGVRLIGMEEGETVTGAARLAE 807



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 92/232 (39%), Gaps = 15/232 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G VK+  +  Y   R GG     + + D D +  + I     +V   S  G 
Sbjct: 611 FVLMATRKGMVKKTDIMDYSRPRSGG--LIALGLADGDELIAVRITDGSWNVFLGSQNGK 668

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      ARG   +  ++L + + +  +              ++  T++G  
Sbjct: 669 SVRFLESDVRPMGRLARG---VKGMTLEKDDHVVGMEVLSH------GNTLMTITENGYG 719

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R ++ ++    R GK  + +       +++++     ++++++ T  G+ +R P+  + 
Sbjct: 720 KRTEIDEYPVNRRGGKGVITIKTTKRNGKVVAILLVENDDELMIMTDRGKLIRIPVGGVS 779

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           V + RN+ GVR I + +G+ V   A +   + D ++                
Sbjct: 780 VIS-RNTQGVRLIGMEEGETVTGAARLAEKEDDENDDSGDDGAALTNGEGDE 830


>gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
 gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134]
          Length = 865

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/899 (42%), Positives = 545/899 (60%), Gaps = 84/899 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  ++I DEM+++Y+ YA++VI+ RA+PD+RDGLKPVHRR+L+GM  +G+ +NK 
Sbjct: 3   ESSSRIIPINIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+A++YD + RMAQ WSLR  L++GQGNFGS+DGD PAA RY
Sbjct: 63  FKKSARIVGEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL++ A  LL DL KDT+DF+PN+D S +EP VL  + P++L+NG  GIAVGMATN+
Sbjct: 123 TEARLKRVADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNM 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +A +DN DI ++ L++ I  PDFPTG +I G  G+K A  TGRG +VI
Sbjct: 183 PPHNLTEVVDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIYGYQGVKKAMLTGRGRVVI 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RGV+ IE T   RE+I+VTEIPY VNKA ++EK A LV+EKRI  I+D+RDESDR G R+
Sbjct: 243 RGVAEIETTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELKR A   V LNQLY+YT+LQS F VN VAL   +PE   L  ++  FV  R EV+ 
Sbjct: 303 VYELKRDAVPMVTLNQLYKYTALQSSFGVNNVALVKGRPEILNLRDMIYHFVEHRHEVIY 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L +A+ R H+L GL IA+ N+DEV+ +IR S + ETA+  L+++          
Sbjct: 363 RRTQFELKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLT + RD I  E   +   IKE   I
Sbjct: 413 ----------------FELSEIQAKAILDIRLQRLTAMERDKIVAEHKQISELIKELEAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+ +   + IIK+EL  +KD     RRT I     D+ DED I  E+MV+T+SH GY+KR
Sbjct: 457 LADKLLRVDIIKEELTEMKDRYGDARRTDIEHMADDLTDEDMIPVEEMVITISHFGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  YR Q RGG G  G   +D+DF   LF+ STH  +L F++ G V+  K + +P  +
Sbjct: 517 TSLDEYRTQNRGGVGSRGTSKKDDDFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVA 576

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N+L + +G+ I  ++     +D     N Y+V  T+ G +++ +L  F + 
Sbjct: 577 KTAKGRAIQNLLQMEKGDSIRAVINVKQLQDPDYNQNHYLVMCTEKGIIKKTRLEAFSRP 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ ++  D++L V+    EN+I+L  + G+ + F    +R   GR + GVRGI+
Sbjct: 637 RQNGIHAITINEDDQLLDVKLTNGENNIILAIRSGRAIHFHEDQVRSM-GRTAAGVRGIT 695

Query: 729 LAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D +V+ M  V   DA                                         
Sbjct: 696 LDGDDNRVVGMVCVARDDAS---------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+GKR+S  D+RI+NR GKG+    ++  ++ G LVA+   
Sbjct: 716 ------------LLVVSETGYGKRSSIEDYRITNRGGKGVITMQIT--DKTGRLVAIKEA 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            D D +IL++  G  IR+ ++++R+  RAT+GV +    +D+ + SV ++    ++ + 
Sbjct: 762 VDTDDLILITKTGLAIRMSMSDMRVMGRATQGVRLIKLHEDDSIASVAKVDAESLLSDD 820


>gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 884

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E  + V+E 
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 907 EST 909
           E +
Sbjct: 821 EQS 823



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 14/265 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L   DQ +S    +  DAD                    
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQQRE 835

Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792
                 +  N    E   SEE  ++
Sbjct: 836 AVVSDEAPGNAIHTEVIDSEENDED 860


>gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 894

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/900 (42%), Positives = 549/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y
Sbjct: 5   PQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYT
Sbjct: 65  KKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EAKMTKITLELLRDINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +  NPDI +  LME I+GPDFPT  +ILG++GI+ AY TGRGSI +R
Sbjct: 185 PHNLTEVIDGVLNLSKNPDITIAELMEDIKGPDFPTSGIILGKSGIRRAYETGRGSIQMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
             + IE+  G R++IVVTEIPYQVNKA M+EKIAELVR+K++  I DLRDE+  R G RV
Sbjct: 245 ARAEIEERGGGRQRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++++ A+A+VILN LY+ T LQ+ F  NM+AL   +P+   L   L  ++  ++ VV 
Sbjct: 305 VIDIRKDANANVILNNLYKLTPLQTSFGANMIALVDGRPKLINLKEALVQYLEHQKVVVR 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L +R          
Sbjct: 365 RRTEYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQER---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q +AIL++RL RLTGL RD I  E N L   I E   I
Sbjct: 415 ----------------FKLTERQAQAILDMRLRRLTGLERDKIEAEYNELLAYIDELERI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    LL +++ EL  +K+     RRT I   G+ ++EDED I  E +V+T+SH  Y+K
Sbjct: 459 LADEEVLLQLVRDELTEIKERFGDERRTEIQLGGIDNIEDEDLIPEEQIVITLSHNNYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P  
Sbjct: 519 RLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPEL 578

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q++G  ++N + L   E I+T++   + E      Y++FATK+G V+R+ LS+F  IN
Sbjct: 579 SRQSKGIPVVNAIELANDESISTMIAVNDLE--SEGNYLIFATKNGIVKRSALSNFSHIN 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++GKIA+     DE+++V     + DIL+ T     +RF  +++R   GR + GV+GI+L
Sbjct: 637 KNGKIAIGFKEDDELIAVRLTDGQQDILIGTAHASLIRFAETSLRPL-GRTAAGVKGITL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD V+ + +                                                 
Sbjct: 696 REGDTVVGLDVAHS---------------------------------------------- 709

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L V+E G+GKRT   ++R+SNR GKGI+   +++ N  G +V +  V  
Sbjct: 710 -----ESEDEVLVVTENGYGKRTPVGEYRLSNRGGKGIKTATITERN--GNVVCITTVTG 762

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            + +++V++ G +IR+ V +I    RA +GV +     ++ V +V +++     DE    
Sbjct: 763 EEDLMIVTNGGVIIRLDVQDISQNGRAAQGVRLMRLGNEQFVSTVAKVQNDSEDDEQSEA 822


>gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
 gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B]
          Length = 849

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/895 (41%), Positives = 545/895 (60%), Gaps = 86/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I SV I +EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+   K
Sbjct: 2   EFNEGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+V+GKYHPHG+ ++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA R
Sbjct: 62  GYRKCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEAKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +IDNP+  +  LM  I+GPDFPTGA I+G  GI++AY TGRG IV
Sbjct: 182 IPPHNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIMGHAGIRSAYETGRGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  S+IE+    R +I+ TEIPYQVNKA ++E IAELV++K+I  I+DLRDESDR G R
Sbjct: 242 IRAKSNIEE-ENGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A+ ++ILN LY++T LQ  F V M+AL   + +   L  +L  +V F++EV+
Sbjct: 301 IVIELKKDANPNIILNLLYKHTKLQDSFGVIMLALVNNETKVLNLKEVLVHYVDFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + LNKA  RAH+L GL IA+ N+D V+ IIR S   E A+  LM           
Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLM----------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AILE++L RLTGL RD I +E N L  +++    
Sbjct: 410 ---------------DEFALSEKQSQAILEMKLRRLTGLERDKIDDEYNELLKQMEYLRS 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LL +IK ELL +K +    RRT I + + ++  ED I  ED+V+T++  GY+K
Sbjct: 455 ILASEEKLLEVIKNELLEIKAKYGDERRTSIEQDMNEINIEDLIQEEDVVITLTKSGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+   VY AQRRGG+G   +  +++DFV  + I STH+ VLFF++ G VYK + + +P  
Sbjct: 515 RISADVYSAQRRGGRGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G  +IN++++   E+I T++   +      + Y+   TK G V++  L++F  + 
Sbjct: 575 GRQAKGTNIINLIAIEPDEKIQTVLTVTD---KRRDGYLFMGTKQGIVKKTHLNEFRNLR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+ L   DE+L V+    + +++  T+ G  +RF    +R   GR + GV+ I+L
Sbjct: 632 KNGLIAINLRENDELLKVKITYGDANVMFVTQNGYALRFNEKDVRHM-GRTASGVKAITL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D  + M I +  +                                            
Sbjct: 691 KGDDIAVCMDIAVDEE-------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L +SE GFGKRT   ++++ +R G G+    +S+  + G LV       
Sbjct: 707 ---------ELLVISENGFGKRTPVNEYKVQHRGGVGLITYKISE--KTGKLVGATICKL 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +D+++L++  G  IR+ V++I   SR+  GV +  T ++E++V++ +I + +  D
Sbjct: 756 DDELMLINTNGVAIRINVSDISKTSRSAMGVTLMRTNEEEKIVAIAKILKGDDED 810


>gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
 gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51]
          Length = 828

 Score =  881 bits (2275), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/901 (40%), Positives = 544/901 (60%), Gaps = 85/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E +   I  + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+  
Sbjct: 2   STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NK Y K AR+ G+ MGK+HPHG+++IYDA+ R+AQD+S R  LI+G GNFGSVDGD  AA
Sbjct: 62  NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K   ++L D+ KDTVDF+PNYD   QEP V+ A++PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++G +A IDNP+I++  LM  I+GPDFPTGA I+G  GI +AY TG+GS
Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMTYIKGPDFPTGASIMGTEGIISAYRTGKGS 241

Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              R  +H+E+     + +I+VTEIPY VNKA ++EKIAELVREKRI  I DLRDESDR 
Sbjct: 242 FRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRT 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R  +  V+LNQLY++T ++  F VN++AL   +P+   L  I+  F+  ++
Sbjct: 302 GMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA   AH+L GL IA+  +DEV+ IIR S + ++A+  LM R      
Sbjct: 362 DVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q++AI+++RL RLTGL R+ I  +   +   I  
Sbjct: 416 --------------------FGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+S   +L IIKQEL  VK++    RRT I      M  ED I  E++V+T+SH G
Sbjct: 456 LKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+PL+ Y++QRRGGKG  G+  R+EDFV  +F  STH  +LFF++ G VY+ K   +
Sbjct: 516 YIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +G AL+N+LS+N  E    I           + ++  AT+ G V++  L ++ 
Sbjct: 576 PEAGRTGKGTALVNLLSINPSEE--KITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYD 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              + G IA+ L   DE++ V     +  I++ TK G C+RF  S +R   GR + GV+G
Sbjct: 634 SPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKG 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL K D V+SM ++   +A+                                       
Sbjct: 693 ISLEKEDLVVSMDVIYEEEAE--------------------------------------- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL+++E GF KRTS  ++R+  R GKGI AT ++   + G LV +  
Sbjct: 714 -------------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNA--KTGKLVGLKV 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +   + ++++++ G +IR  V+ I    R+ +GV+   T +  +VV++  +   E  +E+
Sbjct: 759 MRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRTGES-KVVAIAVVDNKEDAEES 817

Query: 907 E 907
           +
Sbjct: 818 D 818


>gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132]
 gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132]
          Length = 837

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/899 (41%), Positives = 549/899 (61%), Gaps = 85/899 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+    + E    I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM
Sbjct: 1   MAENN--ENAEWGGSIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  N+ Y K ARI GEV+GKYHPHG++++YD + RMAQDWSLR  L++GQGNFGSV
Sbjct: 59  SELGVYHNRPYKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL++ A  +L D+ K+TVDFR N+D S QEP VL +R PN+L+NG  
Sbjct: 119 DGDSPAAMRYTEARLRRIAEEMLADINKETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV +G  A IDNP+I ++ LM  I+ PDFPTG +I G  G+K A
Sbjct: 179 GIAVGMATNMAPHNLSEVTEGITAYIDNPEITIEELMHFIKAPDFPTGGIIYGYGGVKAA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG +VIR V++ E +   +EQIVVTEIPY VNKAAM+EK AELV +K+I  I+ +R
Sbjct: 239 FETGRGRVVIRSVANFEVSKTGKEQIVVTEIPYLVNKAAMIEKTAELVNDKKIEGISGIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+V +LK+ A  +V+LN LY+YT LQ+ FS+N VAL   KPE   L  +++ 
Sbjct: 299 DESDRQGLRIVYDLKKDAVPNVVLNNLYKYTQLQTSFSINNVALVHGKPETLNLKQLIEH 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R +V+ RRT+Y L +A  RAH+L GL IA+ +LDEV+ +IR S +P+ AR  LM++
Sbjct: 359 YVKHRLDVITRRTQYDLREAEKRAHILEGLLIALDHLDEVISLIRSSKDPDEARNGLMEK 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q RAIL++RL RLTGL RD I  E   +
Sbjct: 419 --------------------------FALSEIQARAILDMRLQRLTGLERDKITEEYKQI 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E   IL+S  +   +IK +LL +K +    RR++I     +   ED I  ++M+V
Sbjct: 453 KALIEELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNIEDMIPDDEMLV 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  LS Y++Q RGG G  GV  +D+D+   LF+ + H  +LFF+  G +Y 
Sbjct: 513 TVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMATNHNYLLFFTEKGRLYW 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ N++++   ++I  ++      DE    N Y+V  T++G V+
Sbjct: 573 LRVFEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDEDYIKNNYIVMCTQNGIVK 632

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +  ++G IA+ ++  D+++ V      + I++    G+ VRF  S IR   G
Sbjct: 633 KTLLEMYSRPRQNGIIAININEGDQLIDVALTNGNDYIIIAAGQGKAVRFHESGIRPM-G 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+GISLA+ D+ I M  V                                     
Sbjct: 692 RGATGVKGISLAEDDKAIGMICVNRP---------------------------------- 717

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             +  +L VSEKG+GKR+   D+RI++R  KG++  ++S+  ++
Sbjct: 718 ------------------DAQLLVVSEKGYGKRSDIEDYRITSRGAKGVKTLNMSE--KV 757

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LVA+  V D D +++++ +G  IR+ V+++R+  R T+GV +      + + S+ RI
Sbjct: 758 GNLVAIKEVTDEDDLMIITTRGIAIRMHVSDLRVMGRNTQGVRLIKLNDKDGIASITRI 816



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 101/235 (42%), Gaps = 15/235 (6%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGD 733
           + LD  DE++S+   +++ D     + G   +F +S I+    R  + +R   L   + D
Sbjct: 390 IALDHLDEVISLIRSSKDPD---EARNGLMEKFALSEIQA---RAILDMRLQRLTGLERD 443

Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++      +     + +  +   +      +    D +     +  S +E    E   ++
Sbjct: 444 KITEEYKQIKALIEELNAILASEEKKKDLIKADLLDIKTKYGDERRSKIEMVGGEFNIED 503

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   ++ ++TV+ +G+ KRT+  +++  +R G G R       +    L   F   +++ 
Sbjct: 504 MIPDDEMLVTVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHL---FMATNHNY 560

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           ++  ++KG L  + V E+   ++ +KG     + +   D+++ +V  ++     D
Sbjct: 561 LLFFTEKGRLYWLRVFEVPEGNKTSKGRAIQNLINIESDDKIRAVLNVKTLSDED 615


>gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum]
          Length = 887

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/903 (43%), Positives = 553/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D++DED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLDDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K +  P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYERP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822


>gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11]
 gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46]
          Length = 886

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E  + V+E 
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 907 EST 909
           E +
Sbjct: 821 EQS 823


>gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9]
 gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9]
 gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1]
 gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781]
 gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763]
 gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719]
 gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300]
 gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224]
 gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937]
 gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102]
 gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981]
 gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796]
 gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172]
          Length = 889

 Score =  880 bits (2274), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
 gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A]
          Length = 831

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/902 (41%), Positives = 549/902 (60%), Gaps = 85/902 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E   I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+  N  
Sbjct: 2   SEGDKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG++++YD + RMAQ+WSLR LL++GQGNFGSVDGD PAA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK +  LL D+ K+TVD + N+D + +EP VL  R PN+L+NG  GIAVGMATN+
Sbjct: 122 TEARMQKISEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVVDG +  I+N DI ++ L++ I+ PDFPTG  I G  G++ A+ TGRG IVI
Sbjct: 182 PPHNLTEVVDGTIQYIENNDITIEELIKTIKAPDFPTGGTIYGYDGVREAFLTGRGRIVI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  ++IE+ +  RE I+VTEIPYQVNKA M+ K AE+V +K++  I+ +RDESDR G R+
Sbjct: 242 RAKANIEEVN-GRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LKR A  +++LN+LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R +VVV
Sbjct: 301 VYILKRDAVPNIVLNKLYKYTALQSSFSVNNIALVKGRPQMLNLKEMIHHFVEHRHDVVV 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA DRAH+L GL IA  N+DEV++IIR S + + AR  L+++          
Sbjct: 361 RRTQFELRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQ---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AI+E+RL +LTGL +D +R E N L + I +  DI
Sbjct: 411 ----------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDLLVTIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  + R + IIK EL+ +KD+    RR+ I     D   ED I  E +V+T+SH GY+KR
Sbjct: 455 LDKKERRMEIIKLELVEIKDKYGDERRSNIEYAGGDFSMEDMIPDEQVVITISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL  Y+ Q RGG G+     RDEDF+ DLF+ + H  +LFF+  G  +  +V+ +P GS
Sbjct: 515 TPLIEYKTQNRGGVGQKASTTRDEDFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGS 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N++++ Q +++   +   +  DE   NN YV+ ATK G V++  L  + + 
Sbjct: 575 KTAKGRAIQNLINIEQDDKVQAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ +   DE+L  +     + ++L  K G+ +RF  S  R   GR + GVRGI+
Sbjct: 635 RANGINAINVREDDELLEAKLTNGNSHVMLAVKSGKAIRFEESKTRPM-GRGASGVRGIT 693

Query: 729 LAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA   D+V+ M  V   DA+                                        
Sbjct: 694 LADSKDEVVGMVAVNDMDAN---------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL VSE G+GKR+S  D+RI+NR GKG++   ++  ++ G LV +  V
Sbjct: 714 ------------ILVVSENGYGKRSSLDDYRITNRGGKGVKTISIT--DKTGKLVTIKTV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D +++++  G  IR+ V  +R+  RAT+GV + +   D+ + +V ++   +   E  
Sbjct: 760 TDTDDLMIINKSGIAIRMEVAALRVMGRATQGVRLINLKGDDTIAAVAKVMNDDTPIEDV 819

Query: 908 ST 909
           + 
Sbjct: 820 ND 821


>gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
 gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           LVS]
 gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica
           257]
 gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022]
          Length = 868

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica
           OSU18]
 gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 868

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDIKELICVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427]
 gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139]
 gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160]
 gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19]
 gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133]
          Length = 886

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELGNDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E  + V+E 
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 907 EST 909
           E +
Sbjct: 821 EQS 823


>gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus]
          Length = 886

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL R+ I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERNKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELGNDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E  + V+E 
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 907 EST 909
           E +
Sbjct: 821 EQS 823



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 14/265 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L   DQ +S    +  DAD                    
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQQRE 835

Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792
                 +  N    E   SEE  ++
Sbjct: 836 AVVNDETPGNAIHTEVIDSEENDED 860


>gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 886

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 557/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIVDEA 906
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E  + V+E 
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDADEVNED 820

Query: 907 EST 909
           E +
Sbjct: 821 EQS 823



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 14/265 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L   DQ +S    +  DAD                    
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLG-DDQFVSTVAKVKEDADEVNEDEQSTVSEDGTEQQRE 835

Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792
                 +  N    E   SEE  ++
Sbjct: 836 AVVNDETPGNAIHTEVIDSEENDED 860


>gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68]
 gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3]
 gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis]
 gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591]
 gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3]
          Length = 814

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/897 (41%), Positives = 560/897 (62%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TV+F  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+DNP++    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQLQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM++           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS  Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSVRQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVQIIKDELEEVKRKYADPRRTELMVGEVLSLEDEDLIEETDVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D     + Y+ FAT+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENEAIQTIINVTKD--QEADSYLFFATRQGVVKRTSVSEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+ L   DE+++V     + DI++ TK G  VRF  + +R   GR + GVRGI+L 
Sbjct: 634 SGLKALNLKEDDELINVFLTNGQADIIMGTKFGYSVRFTETDVRNM-GRTATGVRGINLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQ++   ++                                                 
Sbjct: 693 EGDQLVGATMISD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKGFGKRT + ++    R GKGI+   V+  N  G+L  +  V+ +
Sbjct: 706 ------DQEVLVLTEKGFGKRTPASEYPTKGRGGKGIKTLKVADKN--GSLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I++++D G +IR  V  I    R+T GV +     + ++++   +  +EI +E E
Sbjct: 758 EDIMVITDTGVIIRTSVANISQTGRSTMGVKVMRLNDEAKIMTFALVDAAEIKEEKE 814


>gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
 gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A
 gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3]
          Length = 889

 Score =  880 bits (2273), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 555/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A + L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1]
 gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 853

 Score =  879 bits (2272), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/903 (41%), Positives = 541/903 (59%), Gaps = 62/903 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I    + +E+  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 6   DSSRIIPTELREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPF 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++A+YDAL RMAQD+S+R  LIEG GNFGS+D DPPAA RYT
Sbjct: 66  RKCARVVGEVLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYT 125

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  A   LL D+ ++TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 126 ECRLQALATEALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA+I +P +    LM  I GPDFPTG  ILG+ GI+ AY TGRGS+ +
Sbjct: 186 PPHNLGELVDGLVALIHHPQMSDRELMRYIPGPDFPTGGHILGQGGIEEAYTTGRGSMTL 245

Query: 251 RGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           R V+ IE         RE I++TE+PYQ NKAA++EKIAELV EK+I  IADLRDESDR 
Sbjct: 246 RAVATIETLEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRD 305

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN LY+ T LQ  F  NM+A+   +P+  TL   L+ F+ FRE
Sbjct: 306 GIRVVIELKRDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGEPQLLTLKRSLEVFLRFRE 365

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL +A+ANLD V+++IR + +   AR++LMQ       
Sbjct: 366 EAIARRTRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQ------- 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  LSE Q  AIL+++L RLT L  + I  E   L  +I +
Sbjct: 419 -------------------TYALSEAQADAILQMQLRRLTALEAEKIEREHAELQRQIAD 459

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II++E+  +K +  TPRR+RIV+   ++ D D I  +  V+ V+  G
Sbjct: 460 YRDILAHRQRVLEIIEKEVTELKAKFATPRRSRIVQADGEISDIDLIANDKSVILVTQQG 519

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+  + AQ R G+GR G  ++++D V   F  + H  +LFFS  G VY    +++
Sbjct: 520 YIKRMPVDTFEAQSRDGRGRKGAEIKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQI 579

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS QARG  ++ +L + + E+IT+++   E      + Y+V  T+ G +++  L+ F 
Sbjct: 580 PSGSRQARGTPIVQLLPIPREEKITSVIAVQEFS---EDEYLVMLTRKGFIKKTPLAAFS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L+  D++  V    +++ I++ ++ G  + F  S   +R   GR + GV
Sbjct: 637 HIRSNGLIAISLEEGDQLRWVRRTREQDTIIIGSRQGMAIHFRASHDQLRPL-GRATRGV 695

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L  GD+++ M I+  A A+                                   G 
Sbjct: 696 KSMNLRPGDELVGMDILPAAIANRFATPS-------------------------EDDSGE 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I +        +  ++L ++  G+GKR     FR+ NR+G GI AT     +    L A+
Sbjct: 731 IEDSEETVAHSEGPWVLVITTNGYGKRVPVQQFRLQNRAGMGITATKFKAKSNEDQLAAL 790

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN  D++++V+ +G +IR  V +I   SR+  GV +    +D+ +V+   +    +  
Sbjct: 791 RIVNAGDELMIVTSRGIIIRQKVMDISSQSRSATGVRLQRLDEDDAIVTAAVLPPGSMEA 850

Query: 905 EAE 907
            A+
Sbjct: 851 AAD 853


>gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/899 (44%), Positives = 561/899 (62%), Gaps = 74/899 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I S+  +  + I +VSI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R  L++GQGNFGSV
Sbjct: 60  RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF P YD S  EP+V  AR PN+LVNG  
Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG  I GR GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR   HIEK    RE IV+TEIPYQ NK+ +LEKIA L++EKRI  IA+ R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELK+   A+V++NQLY+ T LQ  F + M+++   +PE   L  IL+ 
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR  L+ R
Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E ++L
Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI     +L   S ++ II++E  ++++     RRT I++   ++  ED I RE+MVV
Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+  YR+QRRGGKG  G    DEDFV+ + + STH ++LFFS+ G V+ 
Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E +     Y++ ATK G V++
Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +  + GKIA+ +   DEIL     T +N++LL ++ G  VRF    IR   GR
Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAM-GR 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+LA GD+                                             
Sbjct: 693 GASGVRGITLAAGDE-------------------------------------------QK 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +  +            E  IL VSE GFGKR+   ++R+  R GKG+ A   S+ N  G
Sbjct: 710 GIPADELIGLQVLSGDPEASILVVSENGFGKRSKVDEYRLIRRGGKGVMAIKASERN--G 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V +  V D+DQ+++++++G +IR+P+  IR+  R+T+GV +F+   +E+VV+++R+ 
Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRLA 826



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 20/214 (9%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754
           + G   RF +SAI+      +  +  + L      + +++I     ++       + +  
Sbjct: 413 REGLINRFGLSAIQ------AQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGD 466

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
              +    R       E       + +     E   +++  +E+ ++TV+  G+ KR   
Sbjct: 467 ESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVVTVTHAGYIKRNPV 526

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIA 873
             +R   R GKGI+    +  +     V+   V    D ++  S+KG +    V EI  A
Sbjct: 527 DTYRSQRRGGKGIKGAGTTDEDF----VSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQA 582

Query: 874 SRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            R  +G   V +     +E+V ++  +   E+ +
Sbjct: 583 GRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616


>gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
 gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073]
          Length = 814

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/887 (43%), Positives = 539/887 (60%), Gaps = 85/887 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  V + +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  +K 
Sbjct: 12  ETSGKIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKP 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A + G V+ +YHPHG+AA+Y+ + R+AQD++ R  LI+G GNFGSVDGD PAA RY
Sbjct: 72  YKKSAVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRY 131

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ KDTVDF  NYDGS +EPVVL AR P +LVNG  GIAVGMATNI
Sbjct: 132 TEARLSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNI 191

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V +ID PD DL  + +II+GPDFPT  +I+GR GI+NAY TGRGSI +
Sbjct: 192 PPHNLGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLIIGREGIRNAYRTGRGSIKV 251

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E  S  + QIVVTEIPYQVNKA +++ I +LVREK+I  I DLRDESDR G R+
Sbjct: 252 RAKAQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRI 311

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R     VILNQLY++T +Q  F V M+AL   +P    L  +L  ++  ++EV+ 
Sbjct: 312 VIELRRDVQPKVILNQLYKHTQMQENFGVIMLALVDGRPRVLNLREMLTLYLDHQKEVIT 371

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+YLL +A  RAH++ GL IA+  LDEV+RIIR +PN   A R LM+R          
Sbjct: 372 RRTRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMER---------- 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AI+++RL RLT L R+ +  E   L   I    ++
Sbjct: 422 ----------------FQLSDKQAKAIVDMRLGRLTALEREKLEEEWQELQKRIAYYQEV 465

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S +R+  I++ ELL +K +   PRRT+IV    ++E ED I RED+VVT++H GY+KR
Sbjct: 466 LASEARVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTHRGYIKR 525

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+  YR+Q+RGG+G   +  R+ED V D+F+ +TH  +LFF++ G V++ +   +P   
Sbjct: 526 QPVDTYRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAG 585

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QARG  L+N+L LN+GE IT ++P  E E    + Y++ AT+ G V++  L ++    R
Sbjct: 586 RQARGTPLVNLLYLNKGETITAVIPIRELE---EDSYLLMATRKGIVKKTSLGEYHTSRR 642

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ LD  D+++ V      N+++L T+ G+ +RF    +R   GR + GVRGI+L 
Sbjct: 643 DGLLAINLDEDDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPM-GRAARGVRGIALD 701

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+ +  V                                                 
Sbjct: 702 DDDMVVGLVKVRE----------------------------------------------- 714

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  ++ VSE+GFGKRT+  ++R   R GKGI   +V+     G + AV  V   
Sbjct: 715 ------DAELVVVSERGFGKRTTLEEYRPQGRGGKGIITMNVTDR--TGPVAAVAVVKLE 766

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           D+++L+S +G LIR+ V +I    R T+GV +      +RVV++ RI
Sbjct: 767 DELMLISAEGILIRLGVEDISRQGRNTQGVTLMRLEPSDRVVAMARI 813



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 97/258 (37%), Gaps = 61/258 (23%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  T  G ++R  +  +    R   G  AM     D +  +   T  + +L  T  G+ 
Sbjct: 514 VVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMGTREEDIVRDIFVTTTHHYLLFFTNQGRV 573

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            R     I   AGR + G   V  + L KG+ + ++  +   +                 
Sbjct: 574 FRLRGHEI-PEAGRQARGTPLVNLLYLNKGETITAVIPIRELE----------------- 615

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                            ++ ++L  + KG  K+TS  ++  S R
Sbjct: 616 ---------------------------------EDSYLLMATRKGIVKKTSLGEYHTSRR 642

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G+ A ++ +      LV V     N++++LV+ +G  IR   +E+R   RA +GV  
Sbjct: 643 --DGLLAINLDE---DDDLVGVLRTEGNNEVMLVTRRGKAIRFGEDEVRPMGRAARGVRG 697

Query: 883 FSTAKDERVVSVERIRES 900
            +   D+ VV + ++RE 
Sbjct: 698 IALDDDDMVVGLVKVRED 715



 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A Y E +     + A  R    + +   +    + +         ++L  +E  ++T++ 
Sbjct: 460 AYYQEVLASEARVYAIVRDELLEIKRKFADPRRTQIVLEEENLELEDLIAREDIVVTLTH 519

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ KR     +R   R G+GI+A    + +    +  +F    +  ++  +++G + R+
Sbjct: 520 RGYIKRQPVDTYRSQKRGGRGIQAMGTREEDI---VRDIFVTTTHHYLLFFTNQGRVFRL 576

Query: 866 PVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIV 903
             +EI  A R  +G  + +     K E + +V  IRE E  
Sbjct: 577 RGHEIPEAGRQARGTPLVNLLYLNKGETITAVIPIRELEED 617


>gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594]
 gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594]
          Length = 931

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/900 (49%), Positives = 598/900 (66%), Gaps = 34/900 (3%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF   + G    + Y K A+
Sbjct: 5   ERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAK 64

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMG YHPHG++AIYDALARM QDWSLR+ LI+GQGNFGS+D DPPA+ RYTE RL 
Sbjct: 65  IVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLA 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A+ LLDDL KDTVDF  NYDGS +EP VL AR+PN+LVNG GGIAVGMATN+P HNLG
Sbjct: 125 KVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLG 184

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+DGC+A I NP I  + LM+ I GPDFPT  +ILG+ G + AY TGRGS+++R    I
Sbjct: 185 EVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLILGQAGARAAYTTGRGSVLMRARHEI 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+  GDR+ IV T IPYQV K+ ++EKIA+  +EKRI  I+D+RDES R+G RVV++LKR
Sbjct: 245 EEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLKR 304

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            AS +V+LNQ++RYT  Q+ F  NM+A+ G +PE  TL  I++AFV+FREEV+ RRTK+ 
Sbjct: 305 DASPEVVLNQIWRYTPAQASFPANMLAIKGGRPEVLTLRDIVQAFVSFREEVITRRTKFE 364

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           LNKAR+RAHVL+GL +AV+NLDEVV +IR S NP+ AR +L  + W   DI   I LI+ 
Sbjct: 365 LNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEA 424

Query: 437 SSYTIGSD-GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
              T   + GT  LSE Q +AIL+LRL RLT LGRD+I +EL  L  EI+E L IL+ R 
Sbjct: 425 IEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRG 484

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L G+++ EL+ +KDE  TPR + I      +EDED I REDMVVTV+H GY+KR PL+ 
Sbjct: 485 KLFGVLQDELVEIKDEYATPRVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTPLAT 544

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           +RAQ RGGKGRSG+  +DED V +LF+ STH  VLFF++LG VY+ KVW+LP GSP  +G
Sbjct: 545 FRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEGSPTTKG 604

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + ++N+L L   ER+T ++  PEDE SW  L +VFAT+ G VRRN +  F  +   GK A
Sbjct: 605 RPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYA 664

Query: 676 MKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           M       D ++ VE  +++ +I L +  G+ +RF  +  R    R  +GVRG++L    
Sbjct: 665 MGFVEGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDA 724

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SMA++   + D + R  Y++    +                ++  E  +  ++  ++
Sbjct: 725 KVVSMAVLDRLEQDMETREAYLRAAIWK----------------NNDAEHTLDSDKVAQM 768

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDND 851
           +  E+FILT++  G+GK +S+Y++R   R G+G+        N    G +VA FPV    
Sbjct: 769 EEGEEFILTLTANGYGKISSAYEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGS 828

Query: 852 QIILVSDKGTLIRVPVN-------------EIRIASRATKGVVIFSTAKDERVVSVERIR 898
           Q++LV+D+  LIR+P+                 +  R + GV +F  AK E +V    I 
Sbjct: 829 QLMLVTDQAKLIRMPIEFRHMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAIID 888



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 88/303 (29%), Gaps = 53/303 (17%)

Query: 532 CIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
               E+    +     +  G V+R  +  +     GGK   G V    D +  + ++S  
Sbjct: 625 LPEDEESWAALNIVFATEQGMVRRNSMDAFTNVPTGGKYAMGFVEGTGDRLIGVELLSED 684

Query: 587 TSVLFFSSLGFVYKEKVWRLPI-------GSPQARGKALINILSLNQGERITTIMPFPED 639
             +   S  G   +               G      K    ++S+   +R+   M   E 
Sbjct: 685 QEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDAKVVSMAVLDRLEQDMETREA 744

Query: 640 E----------------------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
                                        +++  T +G  + +   ++  I R G+    
Sbjct: 745 YLRAAIWKNNDAEHTLDSDKVAQMEEGEEFILTLTANGYGKISSAYEYRTIGRGGQGLAN 804

Query: 678 LDSRDEI-------LSVETCTQENDILLTTKLGQCVR------------FPISAIRVFAG 718
           + + D         ++       + ++L T   + +R            F         G
Sbjct: 805 IGTPDSNPERNGPVVASFPVKHGSQLMLVTDQAKLIRMPIEFRHMVEGGFEEHKGWSVYG 864

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GVR   +AKG+ ++  AI+   +   +E    +      R       +      ++
Sbjct: 865 RTSSGVRVFDVAKGEHIVGAAIIDETEEPENEAEEAVVEGMVGRGAEETAPDPTMDRDSN 924

Query: 779 SSV 781
              
Sbjct: 925 EGE 927


>gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
 gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831]
          Length = 837

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/887 (42%), Positives = 540/887 (60%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               ++ ++I++EM+ S+L YA++VI+ RA+PD+RDG+KPVHRRIL+ M  +G+  +K Y
Sbjct: 5   NRPRVSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++A+Y+ + RMAQ +S R +L++G GNFGSVDGD  AA RYT
Sbjct: 65  KKSARIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  LL D+ KDT+D++ NYDG+ +EPVV  AR+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EARMSKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            H+LGE +D  +A+  NPDI +D +M   + GPDFPT   ILGR+GI+ AY TG+GSI I
Sbjct: 185 PHHLGETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQILGRSGIRKAYETGKGSITI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   +IE+   D+E I+VTE+PYQVNKA ++EKIAELVR+K++  I DLRDESDR G R+
Sbjct: 245 RAKLNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R A+A+V+LN LY++TSLQ+ F +NM+AL   +P    +   L  ++  ++ ++ 
Sbjct: 305 VIELRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQPRVLNIKQCLSYYLEHQKVIIK 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM+R          
Sbjct: 365 RRTQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMER---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL RLTGL R+ I +E   L   I+E   I
Sbjct: 415 ----------------FKLSEKQAQAILDMRLQRLTGLEREKIEDEYKELQALIEELKAI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+   ++L II++EL  +K++    RRT IV  G    EDED I  E++V+T++H GY+K
Sbjct: 459 LADEEKVLEIIREELTEIKEKYKEDRRTEIVAGGAGFFEDEDLIPEENIVITLTHQGYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P S YR Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G VYK K + +P  
Sbjct: 519 RLPASTYRTQKRGGRGIQGMGTNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEF 578

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  +IN+L + +GE +  ++   + +      Y+ F TKHG  +R  L  F  I 
Sbjct: 579 SRTAKGIPIINLLQVEKGEWVNAVISVNQFD---EEAYLFFTTKHGIAKRTSLEKFRNIR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   DE++SV     + ++++ TK G  +RF  + IR   GR + GV+GISL
Sbjct: 636 KGGLIAVGLREEDELISVRLTDGQKEMMIATKNGYLIRFEETQIRSM-GRTAAGVKGISL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+SM I+                                                
Sbjct: 695 RGDDVVVSMEIIEPGSK------------------------------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     IL V+ KGFGK+T   ++R  NR GKG+    + +  + G +VAV  VN 
Sbjct: 712 ----------ILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDE--KTGNVVAVKAVNG 759

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++ ++L++  G LIR+ V +I    R TKGV +      E V +V R
Sbjct: 760 DEDLMLITIAGVLIRIQVQDISQTGRNTKGVHLIRLQDGEEVATVTR 806


>gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523]
          Length = 862

 Score =  879 bits (2271), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/903 (42%), Positives = 562/903 (62%), Gaps = 69/903 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R+QK
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDN ++ ++ L+  I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNSELTIEDLIHYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QIVVTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I SD +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS  + L+ ++K+EL+ ++D     R++ I+E  LD+  ED I  E+MVVT+S  GY
Sbjct: 490 IGILSDVNELIRVVKEELVEIRDNYGDERKSEIIESRLDLTREDLIAEENMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  AT+ G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATRLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +    +++SM +                                               
Sbjct: 726 RIHPDQKIVSMLVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S+ ++ + + VD  E
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISL-KVVKQDDVDNGE 850

Query: 908 STE 910
             E
Sbjct: 851 DIE 853


>gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
 gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216]
          Length = 862

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/926 (37%), Positives = 553/926 (59%), Gaps = 97/926 (10%)

Query: 2   TEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           +++ + ++EE+    E  I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 11  SKNNMLTEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRIL 70

Query: 58  FGMM-QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           + M  ++ +  +K   K ARI G+V+GK+HPHG++++Y+A+ RMAQDWS+R  L++GQGN
Sbjct: 71  YDMSAELNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGN 130

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS+DGD PAA RYTE R+QK    ++ D+ KDT+D+  N+D +  EP VL  + P +LV
Sbjct: 131 FGSMDGDSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLV 190

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATN+  HNLGEV+D C A +DNP+I  + L++ ++GPDFPTG +I G  G
Sbjct: 191 NGASGIAVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIYGYEG 250

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++ A  TGRG +V+R  + IE T+  RE IV+TEIPY VNKA M++KIA+L+ EK+I  I
Sbjct: 251 VREALLTGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEGI 310

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           + + DESDR G R+++ LK  A A V+LN LY+ T LQ+ F+VN +AL   +P    L+ 
Sbjct: 311 SYINDESDRNGMRIIVILKHDAVASVVLNTLYKNTPLQTSFAVNNIALVNGRPMMLNLLD 370

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++ FV  R +V+VRRT++ L KA  R H+++GL IA  N+DE++ IIR + NP+ A++ 
Sbjct: 371 LVQHFVEHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLAKQA 430

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           +M+R                            LS+ Q  AI+E+RL  LTGL  D +  E
Sbjct: 431 MMER--------------------------FSLSDAQASAIIEMRLRALTGLEHDKLVAE 464

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
            N L  +I    D+L SR   + I+K ELL VK +    RR+ IV    +   ED    +
Sbjct: 465 RNELEAQIAYFNDVLGSRELQMKIVKDELLEVKAKYGDERRSEIVYASEEFNPEDFYADD 524

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MV+T+SHLGY+KR PL+ YR Q RGG G  G   RDEDF+  +++ + H ++LFF+  G
Sbjct: 525 EMVITISHLGYIKRTPLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKG 584

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKH 654
             Y  KV+ +P G+  ++G+A+ N++ +   +++   +     +D    NN Y++  TK 
Sbjct: 585 RCYWLKVYEIPEGTRSSKGRAIQNVIQIEPDDKVRAYINVKRLDDAEYVNNNYIIMCTKD 644

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G +++ KL  + +  ++G  A+ +   D+++  +  +   ++++  + G+ +RF  + +R
Sbjct: 645 GTIKKTKLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVR 704

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR   GVRGISL +GD+V+ M  +    +                            
Sbjct: 705 PI-GRVGAGVRGISLDEGDEVVGMICIEPNSS---------------------------- 735

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  Q +L +SE G+GKRT   ++RI+NR GKG++  ++++
Sbjct: 736 -----------------------QDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINITE 772

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             + G L+++  V D + +++++  G  IR  V++IR+A RAT+GV I +  + + + SV
Sbjct: 773 --KTGKLISIQAVTDENDLMIINRSGLTIRTAVDQIRVAGRATQGVRIINLREGDAIASV 830

Query: 895 ERIRESEIVD----------EAESTE 910
             +  +E  +          E+ES E
Sbjct: 831 IAVPANEEEEPAVLDGAGAPESESEE 856


>gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4]
          Length = 805

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/877 (42%), Positives = 544/877 (62%), Gaps = 86/877 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GK
Sbjct: 1   MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+++ RMAQ+++ R +L++G GNFGSVDGD  AA RYTE R+ K +  L+ 
Sbjct: 61  YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDT+D++ NYDG  +EP VL AR+PN+LVNG  GIAVGMATNIP H LGE++DG +A
Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  N DI +  LME I GPDFPT  +I+GR+GI+ AY TG+GSI++R    IE+ S  +E
Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIVGRSGIRRAYETGKGSIMMRAKVEIEQKSNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+V+L
Sbjct: 241 TIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT+Y L KA  RA
Sbjct: 301 NNLYKQTALQTSFGINMLALVDGQPKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S   + A+  LM +                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQ------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q +AIL++RL RLTGL R+ I  E  +L   I E   IL+   ++L II++E
Sbjct: 397 --FNLSEKQAQAILDMRLQRLTGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREE 454

Query: 505 LLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           LL +KD  +  RRT IV  G+ ++EDED I RE++V+T++H GY+KR+P S YR+Q+RGG
Sbjct: 455 LLEIKDRFNDVRRTEIVAGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+   D+DFV  L   STH ++LFF++ G  Y+ K + +P  +  A+G  +IN+L 
Sbjct: 515 RGVQGMGTNDDDFVEHLLYTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           + + E I T++   E +      Y+ F T+ G  +R  +SDF  I  +G IA+ L   DE
Sbjct: 575 IEKDEWINTMIRIEEFD---EESYLFFTTQKGISKRTPVSDFANIRTNGLIAINLREDDE 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV+    +  IL+ TK G  +RF    +R   GR + GV+GI+L   D+V+SM I+  
Sbjct: 632 LISVKLTDGDKQILIGTKNGLLIRFDEKDVRSM-GRTATGVKGITLVNDDEVVSMEIIEE 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            D                                                      +L +
Sbjct: 691 DD-----------------------------------------------------HVLVI 697

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ GFGKRT + ++R+ +R GKG++  +++  N  G LVAV  V   + ++L++  G LI
Sbjct: 698 TKHGFGKRTPASEYRLQSRGGKGLKTCNITDKN--GPLVAVKSVTGEEDLMLITVHGVLI 755

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           R+ ++ I I  R T+GV + S  ++E V +  ++ + 
Sbjct: 756 RMDIHAISITGRNTQGVKLISLREEEYVATAAKVAKE 792



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 96/241 (39%), Gaps = 28/241 (11%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DEI+++   +Q  DI    K G   +F +S       + +  +  + L    ++
Sbjct: 368 IALDHIDEIIALIRGSQTTDI---AKEGLMTQFNLSE------KQAQAILDMRL---QRL 415

Query: 736 ISMAIVLHADADYDERI----------CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             +      +   + +              K +   R  +    +    ++    V G I
Sbjct: 416 TGLEREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFNDVRRTEIVAGGI 475

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                ++L  +E  ++T++  G+ KR  +  +R   R G+G++    +  + +  L    
Sbjct: 476 ENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGGRGVQGMGTNDDDFVEHL---L 532

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEI 902
             + +D I+  ++KG   R    EI   +R  KG+ I +     KDE + ++ RI E + 
Sbjct: 533 YTSTHDTILFFTNKGKAYRAKGYEIPEFNRTAKGIPIINLLGIEKDEWINTMIRIEEFDE 592

Query: 903 V 903
            
Sbjct: 593 E 593


>gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis]
          Length = 814

 Score =  879 bits (2270), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/887 (41%), Positives = 549/887 (61%), Gaps = 85/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  +K +
Sbjct: 2   QDKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK+ + E I +LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ FS NM+A+    P+  ++  IL++++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKQTQMQTNFSFNMLAIQNGVPKILSVRQILESYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM+R           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDELVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSLEDEDLIEEADVLITLSNQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    ++AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFQAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L + E I TI+   +D       Y+ FAT+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLEENESIQTIINVTKD--QTAEHYLFFATRQGIVKRANVNEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + D+++ TK G  VRF  + +R   GR + GVRGI L 
Sbjct: 634 NGLKALNLKDDDELINVFLTDGQADVIMGTKFGYSVRFAETDVRNM-GRTATGVRGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD ++   IV                                                 
Sbjct: 693 EGDHLVGATIVSD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L +SE G+GKRT + ++    R GKGI    V+  N  G L  +  V  +
Sbjct: 706 ------DQEVLVLSENGYGKRTPASEYPTKGRGGKGIITLKVADKN--GPLAGLTTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + I++++D G +IR  +  I    R+T GV +    ++ ++++   +
Sbjct: 758 EDIMVITDTGVIIRTSIANISQTGRSTMGVKVMRLDEEAKIMTFALV 804



 Score = 91.8 bits (226), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 98/239 (41%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     RF +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRNSETD---ALAQAELMERFDLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    +V       D      + +   +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADPRRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S +G+ KR +  +F+   R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            +D ++  ++KG + R+   EI    R  KG   V +    ++E + ++  + + +  +
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLEENESIQTIINVTKDQTAE 608


>gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112]
 gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG]
 gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112]
 gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548]
 gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE]
 gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG]
          Length = 868

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/905 (42%), Positives = 565/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS  + L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
 gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147]
          Length = 915

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/919 (41%), Positives = 555/919 (60%), Gaps = 34/919 (3%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             S+D +  K   +VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++ 
Sbjct: 2   THSNDHQFAKETIAVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELK 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
             WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGSVDGD 
Sbjct: 62  NNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDA 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K AH +L D+ ++TV+F  NYDGS QEP+VL  R+P +LVNG  GIAV
Sbjct: 122 AAAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL + +  C+ ++  P+ D++ L++II+ PDFPTGA I G TG++  Y TG
Sbjct: 182 GMATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIYGLTGVRAGYQTG 241

Query: 245 RGSIVIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           RG +VIR  +H+E    SG+RE I+V EIPYQVNKA ++EKI ELVREK I  IA+LRDE
Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G R+VIELKR  +A+VILNQLY+ T LQ  F +NMVAL   +P    L  IL  F+
Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQPRLLNLKQILSEFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EVV RRT + L KAR   H+  G A+A++N+DE++ +I+ S + E AR  L+ R+W
Sbjct: 362 RHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRAW 421

Query: 423 NASDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            +S + +++   D                      +LS+ Q RAIL + L  LTGL +D+
Sbjct: 422 QSSLVSEMLGRSDLDLTQARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQDE 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDED 531
           I  E   L   I + LDIL+   R+  II+ EL+ +K +    RR+ I   G  D+ DED
Sbjct: 482 IVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I   DMVVT++H GY+K  P S Y+AQRRGG+G+     +DEDF+  LFI +TH  ++ 
Sbjct: 542 LIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLMC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++LG  +  KV+RLP G   +RG+ + N++ L++ E+++ I+P  E      N YV FA
Sbjct: 602 FTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDENEKVSAILPVREFP---ENEYVFFA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++ +LS F  ++  G  A+ L   D ++     +  +DI+L + LG+ +RF   
Sbjct: 659 TALGMVKKVQLSAFKNVSSKGIKAIALKEGDSLIGAVKTSGADDIMLFSNLGKALRFNE- 717

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
               +AG+           + D  +   +    DAD +       +        SG    
Sbjct: 718 ---YWAGKADAA------DEDDSELEAEMQPENDADNETAAPKSGNGVRPSGRGSGGLRG 768

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +   +N   V   ++++ C         +LT +  G+GKRT   D+    + G+G  A +
Sbjct: 769 MRLPENGRIVSLLVAQKNC------GLQVLTATANGYGKRTPIDDYPRKGKGGQGNIAIN 822

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + N  G LVA   V+ ND ++L++  G LIR  V ++R   R   GV + +  +   +
Sbjct: 823 TGERN--GDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRETGRTAAGVKLINLDEGTTL 880

Query: 892 VSVERIRESEIVDEAESTE 910
           VS+E + ES+  D+A+ TE
Sbjct: 881 VSIEPVVESDDADDADETE 899



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 66/475 (13%), Positives = 153/475 (32%), Gaps = 72/475 (15%)

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
                +++  +   + R         D+  ++      +A + +++ I+        A+ 
Sbjct: 452 QADGYWLSDEQARAILRMSLRNLTGLDQDEIVKEYKELMAIIVDLLDIL--------AKP 503

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           E +++      ++      D+    I + G   +++       ++ +    G        
Sbjct: 504 ERVRQIIEDELVEMKSQFGDERRSEINAFGGGDIADEDLIPPRDMVVTLTHGGYIKTQPT 563

Query: 476 ELNSLGIE--IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-------------- 519
                       +          +  +                R                
Sbjct: 564 SDYQAQRRGGRGKQAAATKDEDFIETLFIANTHDYLMCFTNLGRCHWIKVYRLPEGGRNS 623

Query: 520 ----IVEGLLDMEDEDC--------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
               I   +   E+E              + V   + LG VK+V LS ++      KG  
Sbjct: 624 RGRPINNVIQLDENEKVSAILPVREFPENEYVFFATALGMVKKVQLSAFK--NVSSKGIK 681

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV-----YKEKVWRLPI-------------- 608
            + +++ D +      S    ++ FS+LG       Y                       
Sbjct: 682 AIALKEGDSLIGAVKTSGADDIMLFSNLGKALRFNEYWAGKADAADEDDSELEAEMQPEN 741

Query: 609 --GSPQARGKALINILSLNQGERITTIMPFPEDESSWN--------NLYVVFATKHGNVR 658
              +  A  K+   +    +G      M  PE+    +         L V+ AT +G  +
Sbjct: 742 DADNETAAPKSGNGVRPSGRGSGGLRGMRLPENGRIVSLLVAQKNCGLQVLTATANGYGK 801

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  + D+ +  + G+  + +++ +     ++    +  +D++L T  G  +R  +  +R 
Sbjct: 802 RTPIDDYPRKGKGGQGNIAINTGERNGDLVAATLVSPNDDLMLITSGGVLIRTKVEQVRE 861

Query: 716 FAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDT 769
             GR + GV+ I+L +G  ++S+  +V   DAD  +    +  + A  +  SG+ 
Sbjct: 862 -TGRTAAGVKLINLDEGTTLVSIEPVVESDDADDADETEALDAVDAVEQNGSGEA 915


>gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327]
 gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327]
          Length = 826

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/897 (40%), Positives = 537/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+++YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++ NK +
Sbjct: 2   QREKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EVV G +A+ID+P+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PHNMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR+G R+
Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVPKVVLNHLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQYYIRHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y LN A  RAH+L GL I + NLDEV+  IR SP+  TA+  L+ R          
Sbjct: 362 RRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDR---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ +AILE+RL RLTG+ R  I +E       I+E   I
Sbjct: 412 ----------------FGLTEVQAKAILEMRLQRLTGMERQKIDDEYKQTMALIEELKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S ++ + IIK+ELL V +     RRT +     D   ED I +ED+V+T++H G++KR
Sbjct: 456 LASPAKQMEIIKEELLKVSEVYGDERRTEMRPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G +G   ++EDF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQHRGGRGVAGAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I T +     +   +  +++ AT +G V++  L  +    R
Sbjct: 576 RSARGRSLANIMELPPGEKIRTYINIRNFD---DPHFIIMATANGIVKKTDLKQYSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       ++ ++L    G  VRFP S +R   GR ++GV+GI+L 
Sbjct: 633 TGINAITIEEGDELIEARLTDGDHQVILAKSSGYAVRFPESEVRSM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + ++ ISM      D                                             
Sbjct: 692 EAERCISMVTTKRNDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ G+GKR+   D+R++ R  +G+      +  +IG LV +  VND 
Sbjct: 709 ---------LLAVTDNGYGKRSKVEDYRMTKRGARGVITIKAHE--KIGNLVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++  G +IR  V++IR+  R T GV +      +R+ +  R+ +S+    +E
Sbjct: 758 DDLIIITTNGIVIRQHVSDIRVLGRNTSGVRLIRLDAGDRISATARVPKSDDEPTSE 814


>gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398]
          Length = 889

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNVGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DADDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 106/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T +G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNVGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D D+     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDADDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 828

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/901 (40%), Positives = 543/901 (60%), Gaps = 85/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E +   I  + I++E++ S++ Y+++VI+ RA+PD+RDGLKPVHRRI++ + ++G+  
Sbjct: 2   STEIQGGKILPIEISEELKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           NK Y K AR+ G+ MGK+HPHG+++IYDA+ R+AQD+S R  LI+G GNFGSVDGD  AA
Sbjct: 62  NKPYSKSARLVGDCMGKFHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K   ++L D+ KDTVDF+PNYD   QEP V+ A++PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMAKITQYMLADIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++G +A IDNP+I++  LM  I+GPDFPTGA I+G  GI +AY TG+GS
Sbjct: 182 TNIPPHNLTEVIEGTIAQIDNPEIEIKELMNYIKGPDFPTGASIMGTEGIISAYRTGKGS 241

Query: 248 IVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              R  +H+E+     + +I+VTEIPY VNKA ++EKIAELVREKRI  I DLRDESDR 
Sbjct: 242 FRTRAKAHVEEMEKSGKMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRT 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R  +  V+LNQLY++T ++  F VN++AL   +P+   L  I+  F+  ++
Sbjct: 302 GMRIVMELRRDVNPQVLLNQLYKHTQMEESFGVNILALVDGQPKVLNLKQIIHYFIEHQK 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+VRRT++ LNKA   AH+L GL IA+  +DEV+ IIR S + ++A+  LM R      
Sbjct: 362 DVIVRRTRFELNKAEAEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q++AI+++RL RLTGL R+ I  +   +   I  
Sbjct: 416 --------------------FGLSDKQSQAIVDMRLKRLTGLEREKIEEQYQKIQETIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+S   +L IIKQEL  VK++    RRT I      M  ED I  E++V+T+SH G
Sbjct: 456 LKAVLNSEQMVLNIIKQELQEVKEKFGDERRTEISFDATHMNIEDLIDDEEVVITMSHRG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+PL+ Y++QRRGGKG  G+  R+EDFV  +F  STH  +LFF++ G VY+ K   +
Sbjct: 516 YIKRMPLNTYKSQRRGGKGVHGMATREEDFVEKIFTTSTHQYILFFTTRGKVYRLKAHEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +G AL+N+LS+N  E    I           + ++  AT+ G V++  L ++ 
Sbjct: 576 PEAGRTGKGTALVNLLSINPSEE--KITAVLSIRKYNEDFHLFMATRKGIVKKTLLKEYD 633

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              + G IA+ L   DE++ V     +  I++ TK G C+RF  S +R   GR + GV+G
Sbjct: 634 SPRKDGLIAISLSGDDELIDVRLTKPDEHIIIATKNGLCIRFLESDVRQM-GRTAHGVKG 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL K D V+SM ++   +A+                                       
Sbjct: 693 ISLEKEDLVVSMDVIYEEEAE--------------------------------------- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL+++E GF KRTS  ++R+  R GKGI AT ++   + G LV +  
Sbjct: 714 -------------ILSMTELGFSKRTSLSEYRVQGRGGKGIIATKLNA--KTGKLVGLKV 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +   + ++++++ G +IR  V+ I    R+ +GV+     +  +VV++  +   E  +E+
Sbjct: 759 MRPENDMMIITEDGIIIRQEVSGISKQGRSAQGVMAMRIGES-KVVAIAVVDNKEDAEES 817

Query: 907 E 907
           +
Sbjct: 818 D 818


>gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
 gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603]
          Length = 883

 Score =  878 bits (2269), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/898 (40%), Positives = 549/898 (61%), Gaps = 84/898 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   + D   +  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG++++Y  + RMAQ+WSLR  L++GQGN+GS+
Sbjct: 61  LNLGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL K A  +L D+ KDT+D++ N+D + QEP VL A++PN+LVNG  
Sbjct: 121 DGDNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV++  +A ID+ +I++  LM+ ++GPDFPTG +I G  G + A
Sbjct: 181 GIAVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIYGFEGAREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG I++R  + IE  + DRE+I+VTEIPYQ+NK+ M+E+ AELV EK++  I+ +R
Sbjct: 241 SETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RVV E+KR A+A ++LN L++YTSLQ+ FSVN +AL   +P    L  ++  
Sbjct: 301 DESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGRPMLLNLKDLIHH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EV+VRRTK+ L +A  RAH+L GL IA+ +LDEV+++IR S  P+ AR  LM R
Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I+ E N L
Sbjct: 421 --------------------------FNLSDIQARAILDMTLRRLTGLERDKIKAEYNEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL+     + IIK EL+ +K++    RRT+IV    +M+ ED I  E++V+
Sbjct: 455 MKLIDYLKSILADEGLRMEIIKNELIEIKEKYGDERRTQIVHSSAEMQTEDFIEDENVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR PL+ YR Q RGGKG  G   RD DF+  L I S H  +LFF+  G  + 
Sbjct: 515 TISHEGYIKRTPLTEYRTQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ NI+++ + E I   +     +D     N +++  T+ G ++
Sbjct: 575 LRVFEIPEGTRTSKGRAIQNIINIPKEENIKAYIKLTSLKDRDYLENNFIIMCTRKGVIK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D +L     T  ++I++  K G+ +RF  S +R   G
Sbjct: 635 KTSLEAYSRPRANGINAININEGDTLLQATLTTGSSEIVMALKSGRAIRFNESTVRPM-G 693

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGI+LA + D+V+ M  +                                    
Sbjct: 694 RTATGVRGITLAGENDEVVGMIAIDD---------------------------------- 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              E  +L VSEKG+GKRT   D+R++NR GKG++  +V++  +
Sbjct: 720 ------------------AETTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTE--K 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            G LVA+  V D   +++++  G +IR+ +N++R   RAT+GV + S  +++ + SV 
Sbjct: 760 TGQLVAIKGVTDEHDLMIINRSGIIIRISMNQLRTMGRATQGVRLISLKENDSIASVA 817


>gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
 gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521]
          Length = 835

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/886 (41%), Positives = 544/886 (61%), Gaps = 86/886 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K Y
Sbjct: 5   NEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYT
Sbjct: 65  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG + +IDNP++ +  LM  I+GPDFPTGA I+G+ GI+ AY TGRG IV+R
Sbjct: 185 PHNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R+V
Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+ +V+LN LY++T LQ  F V M+AL   +P    +  IL  ++ +++EV+ R
Sbjct: 304 VELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM++           
Sbjct: 364 RTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q  AILE+RL RLTGL R+ I  E   L  +I+    IL
Sbjct: 413 ---------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  +LLG+IK EL  +K +    RRT+I + + +++ ED I  ED+V+T+++ GY+KR+
Sbjct: 458 ASEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRI 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y AQRRGGKG   +  +++DFV  + I STH+ VLFF++ G VYK + + +P    
Sbjct: 518 SADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G  +IN++++   E+I T++   +        ++  ATK+G V++  +S+F  + ++
Sbjct: 578 QAKGTNVINLIAIEPDEKIQTVLTVSD---GKKEGFLFMATKNGIVKKTHISEFKNLRKN 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L V+    + +I++ T+ G  VRF    +R   GR + GV+ I+L  
Sbjct: 635 GLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKD 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  + M I +  +                                              
Sbjct: 694 DDVAVCMDIAVDGE---------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE GFGKRT   ++++ NR G G+    +S+  + G L        +D
Sbjct: 708 -------ELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDD 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++L++  G  IR+ V +I + +R+  GV +  T +DE+VV++ +I
Sbjct: 759 ELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804


>gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 868

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAALV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
 gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819]
          Length = 889

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 553/903 (61%), Gaps = 85/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 TILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E +  DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKE-DAEDETN 819

Query: 908 STE 910
             E
Sbjct: 820 EDE 822



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 16/273 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    ++ +V  +  G VKR  LS +    R GK    +  R++D +  + + S    +L
Sbjct: 607 DLESEDNFLVFATKRGVVKRSALSNFSRINRNGKI--AISFREDDELIAVRLTSGQEDIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S   + +     L      A G   I +   ++   +        DE       V+ 
Sbjct: 665 IGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSVDE-------VLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
            T++G  +R  ++D+   NR GK    A   +    ++ + T T E D+++ T  G  +R
Sbjct: 718 VTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAGVIIR 777

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I    GR + GVR I L     V   + V     D ++     +  ++       
Sbjct: 778 LDVADI-SQNGRAAQGVRLIRLGDDQFV---STVAKVKEDAEDETNEDEQSTSTVSEDGT 833

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + +    + +++      +E    E   ++  I
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRI 866


>gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929]
 gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929]
          Length = 850

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/904 (39%), Positives = 546/904 (60%), Gaps = 84/904 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +  + DE     +T+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++
Sbjct: 3   NKDNHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHEL 62

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQD+S R +L++G GNFGSVDGD
Sbjct: 63  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGD 122

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K A  +L D+ KDT+DF+PNYDG+ +EP VL +R+PN+LVNG  GIA
Sbjct: 123 GAAAMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIA 182

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNL EV+     ++ NPD     LME + GPDFPTG V++G++GI+ AY T
Sbjct: 183 VGMATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVMGKSGIRKAYET 242

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G+I++R    IE  +G +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DES
Sbjct: 243 GKGTIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDES 302

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+    P+  +L  IL  ++ 
Sbjct: 303 DREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPKILSLKEILNYYLE 362

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+ RRTKY LNKA+ RAH+L GL IA+ ++DE+++IIR S   + A+ +L++    
Sbjct: 363 HQVEVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIE---- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L + Q +AIL++RL RLTGL R+ I  E N L  +
Sbjct: 419 ----------------------GFGLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKD 456

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-V 542
           I+E   IL+SR R+  II QELL ++++   PRRT ++ G +   +++ ++ E+ V+  +
Sbjct: 457 IEEYKAILASRERVNEIIYQELLEIQNKFGDPRRTELLVGEVLSLEDEDLIEEEDVIISL 516

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR+P S ++AQ RGG+G  G+ + ++DFV  L   STH  +LFF+  G VY+ K
Sbjct: 517 THNGYIKRLPTSEFKAQNRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMK 576

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     A+G  +IN+L++   E+I  ++   +  +      + F T  G V+R  +
Sbjct: 577 GYEIPEYGRSAKGIPVINLLNIGNNEKIQAVINVSDKNNDIE-KDLFFVTLMGTVKRTPV 635

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF  I  +G  A+ L   D++ +V   +++ +I++ T  G  V F  + +R   GR++ 
Sbjct: 636 SDFANIRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSM-GRSAT 694

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L + D V+   I+                                         
Sbjct: 695 GVRGVRLRENDYVVGSDILK---------------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +  +  +SE G+GKRT + ++ I  R GKGI+  ++++ N  G L 
Sbjct: 715 -------------PDSEVFIISENGYGKRTPAAEYPIKGRGGKGIKTANITEKN--GPLA 759

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  VN  + I+L++D+G +IR  V ++    RAT GV +       +V ++ ++ + + 
Sbjct: 760 GLTTVNGEEDIMLITDQGVMIRFSVEDVSQTGRATLGVHLIRMTDGAKVATMAKVEKQDD 819

Query: 903 VDEA 906
            ++ 
Sbjct: 820 SEDD 823



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 95/246 (38%), Gaps = 17/246 (6%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  +  V+ +G VKR P+S +   R  G     + ++D+D V+++ I S   +++  +  
Sbjct: 618 EKDLFFVTLMGTVKRTPVSDFANIRSNG--LKAINLKDDDQVSNVLIASEDQNIIIGTHR 675

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+        +      A G   +         R+         +    +  V   +++G
Sbjct: 676 GYAVSFNAADVRSMGRSATGVRGV---------RLRENDYVVGSDILKPDSEVFIISENG 726

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPIS 711
             +R   +++  I   G   +K  +  E    +  + T   E DI+L T  G  +RF + 
Sbjct: 727 YGKRTPAAEYP-IKGRGGKGIKTANITEKNGPLAGLTTVNGEEDIMLITDQGVMIRFSVE 785

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR ++GV  I +  G +V +MA V   D   D+                 + ++
Sbjct: 786 DV-SQTGRATLGVHLIRMTDGAKVATMAKVEKQDDSEDDTKDQSSDSEQASDDSGTNADQ 844

Query: 772 ITSLKN 777
            +   N
Sbjct: 845 NSDSDN 850


>gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
 gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122]
          Length = 886

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/903 (43%), Positives = 554/903 (61%), Gaps = 86/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGRRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDERRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++E    DE  
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKED--ADEVN 818

Query: 908 STE 910
             E
Sbjct: 819 EDE 821


>gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
 gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657]
          Length = 826

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+V
Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+ +LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   +     +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
 gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf]
          Length = 821

 Score =  878 bits (2268), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+V
Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+ +LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   +     +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549]
          Length = 868

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/905 (42%), Positives = 565/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS  + L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDINELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQGDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
 gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174]
          Length = 848

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/911 (41%), Positives = 557/911 (61%), Gaps = 94/911 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EDNIFDKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      D  ++ L+EI++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K+I  I DL D S
Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPERFTLIGILK 359
            R+G R+ I+L++ A+A+V+LNQLY++T LQ  F V M+ L       +P+  TL  +LK
Sbjct: 302 SREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLK 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++A +E+VV RRTKY LNKA++RAH+L GL  A+ N+DEV+RIIR S + + A++ELM 
Sbjct: 362 HYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMD 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L++VQ +AI+++RL  LTGL R+ +  E   
Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAE 455

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+ R+ LL +I++E+L++ ++    RRT I     D+  ED I RE+ V
Sbjct: 456 LMEKIRKLKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAFDISMEDMIPRENTV 515

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++ LGY+KR+ +  +R+Q RGG+G  G+   D+D++ +L + +TH  V+FF++ G VY
Sbjct: 516 ITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVY 575

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P     ARG A+IN+L L  GERIT ++P  + E      Y++ AT+ G V++
Sbjct: 576 RLKAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFE---EGQYLMMATRKGLVKK 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + D+  + + G  A+ L   DE++ V+    + DI+L TK GQC+RF  S +R   GR
Sbjct: 633 TPIQDYANVRKIGLAAISLRDDDELIEVKATDDKKDIILVTKYGQCIRFKESDVRS-TGR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L  GD+V++M                                         
Sbjct: 692 VSMGVRGINLLDGDEVVAM----------------------------------------- 710

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L  +  ++L VSE G GKRTS  +F   NR GKG++   +++  + G
Sbjct: 711 ------------QLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITE--KTG 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++    VN+ ++I++++ +G +IR+  ++I I  R T GV + + +    V S  ++RE
Sbjct: 757 NVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVRE 816

Query: 900 SEIVDEAESTE 910
            E    +E TE
Sbjct: 817 KEEDKNSEKTE 827


>gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
 gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1]
          Length = 850

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 400/899 (44%), Positives = 561/899 (62%), Gaps = 74/899 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I S+  +  + I +VSI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTE-ITSNLPDSPEDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +++R  L++GQGNFGSV
Sbjct: 60  RELNNYHNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF P YD S  EP+V  AR PN+LVNG  
Sbjct: 120 DGDPPAAMRYTEARMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG + +I++P+I + +LMEII GPDFPTG  I GR GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFICGRAGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS++IR   HIEK    RE IV+TEIPYQ NK+ +LEKIA L++EKRI  IA+ R
Sbjct: 240 YETGRGSLLIRSRHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELK+   A+V++NQLY+ T LQ  F + M+++   +PE   L  IL+ 
Sbjct: 300 DESDRHGMRIVIELKKDEIAEVVINQLYKMTPLQKSFGIIMLSIVNMRPEVLNLRQILEN 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT Y L KA ++AHVL GL IA+ NLDEVV +I+ S NP+ AR  L+ R
Sbjct: 360 FILHRKTVVYRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E ++L
Sbjct: 420 --------------------------FGLSAIQAQAILEMRLHRLTGLEREKIIEEYDAL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI     +L   S ++ II++E  ++++     RRT I++   ++  ED I RE+MVV
Sbjct: 454 MKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+  YR+QRRGGKG  G    DEDFV+ + + STH ++LFFS+ G V+ 
Sbjct: 514 TVTHAGYIKRNPVDTYRSQRRGGKGIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFW 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E +     Y++ ATK G V++
Sbjct: 574 RKVYEIPQAGRLARGKAVVNLLELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKK 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS+F +  + GKIA+ +   DEIL     T +N++LL ++ G  VRF    IR   GR
Sbjct: 634 TALSEFARPLKRGKIALTIREDDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAM-GR 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+LA GD+                                             
Sbjct: 693 GASGVRGITLAAGDE-------------------------------------------QK 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +  +            E  IL VSE GFGKR+   ++R+  R GKG+ A   S+ N  G
Sbjct: 710 GIPADELIGLQVLSGDPEASILVVSENGFGKRSKVGEYRLIRRGGKGVMAIKASERN--G 767

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V +  V D+DQ+++++++G +IR+P+  IR+  R+T+GV +F+   +E+VV+++R+ 
Sbjct: 768 EVVGMSQVCDDDQVMMITNRGQIIRMPMQGIRVIGRSTQGVRLFNLDNEEKVVALDRLA 826



 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 83/214 (38%), Gaps = 20/214 (9%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754
           + G   RF +SAI+      +  +  + L      + +++I     ++       + +  
Sbjct: 413 REGLINRFGLSAIQ------AQAILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGD 466

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
              +    R       E       + +     E   +++  +E+ ++TV+  G+ KR   
Sbjct: 467 ESLVMKIIREEFEAIRETYGDDRRTEIIDAPDEILPEDMIAREEMVVTVTHAGYIKRNPV 526

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIA 873
             +R   R GKGI+    +  +     V+   V    D ++  S+KG +    V EI  A
Sbjct: 527 DTYRSQRRGGKGIKGAGTTDEDF----VSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQA 582

Query: 874 SRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            R  +G   V +     +E+V ++  +   E+ +
Sbjct: 583 GRLARGKAVVNLLELGAEEKVAAILPVDSFEVTE 616


>gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree]
 gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree]
          Length = 831

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/887 (40%), Positives = 541/887 (60%), Gaps = 86/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL R+AQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+ +  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKADIEEEK-GRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V+LNQLY++T LQ  F + M+AL   +P+   L  IL  ++ F++EV+ R
Sbjct: 302 IELKRDANPNVVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYLEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L   I     IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL  +K++    RRT IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELTEIKNKYGDERRTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   +     +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIVKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+ I+L +
Sbjct: 633 GLIAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPM-GRTASGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMDVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIK 803


>gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
 gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684]
          Length = 833

 Score =  877 bits (2267), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/900 (43%), Positives = 555/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++   SV+I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G E+NK Y
Sbjct: 3   SQQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+YD + RMAQ +S+R  L++GQGNFGS+DGD  AA RYT
Sbjct: 63  KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +H LL D+ K+TVDF PNYD S  EP+VL  ++PN+LVNG  GIAVGMAT IP
Sbjct: 123 EVRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++G V++ID+P +  + L++II GPDFPT   ILG   ++ AY TGRG I +R
Sbjct: 183 PHNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFILGHEDVQEAYRTGRGIIQMR 242

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE IV+ EIPYQVNKA ++EKIA L++EK+I  I+DLRDESDR G R+
Sbjct: 243 AKAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR A A V+LNQLY+ T++QS F + M+A+ G +P+  TL  +L  F+  R+E+V 
Sbjct: 303 VIDLKREAVAGVVLNQLYKMTAMQSSFGIIMLAIVGGQPKILTLREVLDQFIDHRKEIVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L KA  RAH+L GL IA+ NLDE+++II+ S N + A+  L++R          
Sbjct: 363 RRCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S++Q +AIL++RL RLTGL RD I NE N +  +I    +I
Sbjct: 413 ----------------FTFSDIQAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S   +L II+ EL+ VK+  D PRRT I+    D+  ED IV EDMVVTVSH GY+KR
Sbjct: 457 LGSEVEILKIIRAELIEVKENYDDPRRTEIIAKTKDLSIEDLIVEEDMVVTVSHSGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +S+YR+QRRGGKG++G+  ++EDFV  LFI STH+ +L F+  G VY  KV  +P G 
Sbjct: 517 NAVSLYRSQRRGGKGKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARGKA++N+L L   ER+ TI+P  E      + Y++ ATK+G V++ +L  +    +
Sbjct: 577 RAARGKAIVNLLQLAPEERVMTILPVKEFV---EDKYIIAATKNGVVKKTELMAYANPRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G I+M +D  D +++        D+LL +  G+ +RF  + +R   GR + GVRG+ L 
Sbjct: 634 GGIISMTIDEGDSLVATRITDGSMDVLLASHHGKSIRFAETDVRPM-GRTARGVRGMQLE 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D +I M +V    +                                            
Sbjct: 693 GDDTIIGMEVVNDNTSAS------------------------------------------ 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +++V+E G+GKRT+  ++R+ +RSGKGI     S  N  G +V +  V D 
Sbjct: 711 ---------LVSVTENGYGKRTNLSEYRVQSRSGKGIITIKTSDRN--GYVVDIKLVTDE 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++ ++D+G ++R  V  + I  R T+GV +     DER+V+V ++ E E     E  E
Sbjct: 760 EDLMFITDRGKILRTRVGSLSIIGRNTQGVRLMVLEDDERIVAVAKLAEKEEELPQELIE 819


>gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 843

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/903 (41%), Positives = 553/903 (61%), Gaps = 86/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  +  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A IDN +I++D LM+ I+ PDFPTG  I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G ++IE+    RE I+VTEIPYQVNKA M++K A+L+ +K++  I+ +RDESDR G R+V
Sbjct: 243 GNANIEEVQ-GRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+LY+YT+LQS FSVN +AL   KP+   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGKPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E   L   I++  DIL
Sbjct: 411 ---------------FELSEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  V+D+    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKDRRMSIIKEELQLVRDKYGDERRSKIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   NN YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDEEYVNNHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D +L  +  T E+ ++L  K G+ +RF  +  R   GR + GVRGI L
Sbjct: 636 TNGINAITIKEDDVLLEAKLTTGESQVMLALKSGKAIRFEEAKTRPM-GRGASGVRGIRL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  V   D++                                        
Sbjct: 695 QDEKTDEVIGMIAVNDMDSN---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL VSE G+GKR+S  D+RI+NR GKG++   +++  + G LV++  V
Sbjct: 715 ------------ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITE--KTGNLVSIKNV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++   E     E
Sbjct: 761 TDEDDLMIINKSGIAIRMAVADLRVMGRATQGVKLINLKGKDSIAAVAKVMHEEEEVVDE 820

Query: 908 STE 910
           + E
Sbjct: 821 TIE 823


>gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca]
 gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 884

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/905 (41%), Positives = 540/905 (59%), Gaps = 45/905 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL       +L D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+VDG VAVI NP+I    LM  I GPDFPTGA ILGR+GI+ AY TGRGSI +
Sbjct: 184 PPHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKILGRSGIREAYTTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  I+D+RDESDR+
Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A   V+LN LY+ T LQ+ F  NM+AL   KPE  TL   L  F+ FR 
Sbjct: 304 GMRIVVELRRDAYPRVVLNNLYKQTPLQANFGANMLALVNGKPELLTLKRYLHVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             + RRT+Y   KA +R H+L GL IA+ NLD ++ +IR + +  TA++EL++R      
Sbjct: 364 HTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIER------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AIL+++L RLT L    I  E   L  +I +
Sbjct: 418 --------------------FGLSEPQADAILQMQLRRLTALEAQKIDQEHQELLEKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L I++QE + +K+   TPRRT I     ++ED D I  E  ++ ++  G
Sbjct: 458 LNDILNRRERILEIVEQEAIQIKERHGTPRRTEIELEESELEDTDLIANEKAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G+SG  M+++D V        H S+LFF+  G  Y  K +++
Sbjct: 518 YIKRMPVNTFEAQNRATRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PIGS  ARG  ++ +L + + E+IT+++   E     N+ Y+V  TK G +++  LS F 
Sbjct: 578 PIGSRIARGVPIVQMLPIPRDEKITSLVAVGEFT---NDEYLVMLTKGGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724
            I  +G IA+ L+  DE+  V +   ++ I++ ++LG  + F      +R   GR + GV
Sbjct: 635 NIRSNGLIAISLNEGDELRWVRSARVDDSIIIGSRLGMAIHFHTDDKQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L   D++I M I+                          + EE T+   D     +
Sbjct: 694 KSMKLKPNDELIGMDILPSF--------IVATIPQLGGEEPEIEEEENTTAVEDVEDMDS 745

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             E    E++     IL ++ +G+GKR     FR+ NR+GKGI AT          +VA+
Sbjct: 746 SEELATTEVEPDGVSILVITTRGYGKRVPVSQFRLQNRAGKGIIATKFKPHLSGDCVVAL 805

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V++ D+++L++ +G +IR  ++ I   SR   GV +    K++ + +V  +  S   D
Sbjct: 806 QVVHNTDELMLITSRGIIIRQVISAISRQSRNATGVRVQRLDKEDAIAAVALVPLSGEGD 865

Query: 905 EAEST 909
           + E  
Sbjct: 866 DTEVD 870


>gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
 gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11]
          Length = 813

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/895 (40%), Positives = 545/895 (60%), Gaps = 85/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++  +   E+ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVVEPEEVE 813


>gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118]
 gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 850

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 551/898 (61%), Gaps = 84/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K
Sbjct: 6   NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP H
Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R  
Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM               
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q +AIL++RL RLTGL RD + NE +     I +  DIL+ 
Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  II +ELL ++++    RRT ++   +L +EDED I  E++VVT++H GY+KR+P
Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     
Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  +IN+L ++  E+I T++  P D+   +  +Y+ F T+ G V+R  +S+F  I ++
Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE+++V       +I++ T  G  V F    IR   GR++ GVRGI L  
Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  AI+                                                  
Sbjct: 699 NDYVIGSAIL-------------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +  +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++
Sbjct: 709 ---EPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   +  + +E T
Sbjct: 764 DIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 17/252 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +E  +  ++  G VKR  +S +   R+ G     + +RD D + ++       +++  + 
Sbjct: 612 KEMYLFFITRQGTVKRTSVSEFGNIRKNG--LKAITLRDGDELINVLATDDSKNIIIGTH 669

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+        +      A G   I         R+                 V   +++
Sbjct: 670 QGYAVSFDEKDIRSMGRSAAGVRGI---------RLRDNDYVIGSAILEPESKVFVISEN 720

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710
           G  ++   S++  I   G   +K  +  E    +  + T   + DI++ T  G  +RF I
Sbjct: 721 GYGKQTAASEYP-IKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFKI 779

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GR ++GVR I+L     V +M  V   D + +      +  +           
Sbjct: 780 SDVSE-TGRATLGVRLINLGADSIVSTMTKVEPEDENENSEETTQEVSTEISDDTKDSDV 838

Query: 771 EITSLKNDSSVE 782
                      E
Sbjct: 839 ARLLDAAQKDGE 850


>gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland]
 gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland]
          Length = 831

 Score =  877 bits (2266), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/890 (40%), Positives = 547/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +IDN D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNK+ ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   +     +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLGDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|330998923|ref|ZP_08322650.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
 gi|329576137|gb|EGG57656.1| DNA gyrase, A subunit [Parasutterella excrementihominis YIT 11859]
          Length = 955

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/911 (39%), Positives = 537/911 (58%), Gaps = 67/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++      +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WN +
Sbjct: 65  QQVNKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQ 124

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ G+V+GKYHPHG+AA Y+ + RMAQD+S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 125 HKKSARVVGDVIGKYHPHGDAAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRY 184

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K +  +L  L +D VDF PNYDG+ +EP VL   +P +L+NG  GIAVGMATNI
Sbjct: 185 TEVRLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNI 244

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E V+ C+ V+ NP+  +D +++++  PDFPTG ++ G + +  AY TGRG  +I
Sbjct: 245 PPHNLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAII 304

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +HIE+      E I++ EIPYQVNK  +LEKIA+LV EK+I  ++ +RDESD+ G R
Sbjct: 305 RAKTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMR 364

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            VIELKRGA+A+V+LN LY+ T LQ  F +N+VAL   +P++  +  IL  F++FR EVV
Sbjct: 365 GVIELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVV 424

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R T +  +KAR R +++ G AIA+ANLD+ + IIR S N + A   L++R W A +  +
Sbjct: 425 TRVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAE 484

Query: 430 LIDLI-----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +I              +D +  +    T  LS +Q + IL++RL  LTGL ++ I  E  
Sbjct: 485 MIKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYK 544

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I +  DIL+   R+  II   L +V  E    R+T+IV    +++ +D I   +M
Sbjct: 545 ELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREM 604

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT++  GY+K      YRAQ+RGG+G+    M++ D +  LF+ +TH  +L F++ G +
Sbjct: 605 VVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRL 664

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +   VW +P GS  ++G+ ++N+L L   E++T ++P   DE    +LY+  AT  G V+
Sbjct: 665 HWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPI-SDEDYAKDLYIFMATADGTVK 723

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  + DF    R+G  A+ L   D ++       ++D++L +  G+ VRF    +R   G
Sbjct: 724 KTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-G 782

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ L +G +VISM +    +                                 
Sbjct: 783 RAATGVRGMRLDEGQKVISMLVCGDDEDVT------------------------------ 812

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LT +E G+GKR+   ++    R  KGI +   ++ N  
Sbjct: 813 ---------------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN-- 849

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V+   V +ND+IIL++  G L+R  VNEIR+  R T+GV + S  +  ++V +ER+ 
Sbjct: 850 GKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVT 909

Query: 899 ESEIVDEAEST 909
           E++  D A   
Sbjct: 910 ENDDGDNASDN 920



 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 163/445 (36%), Gaps = 42/445 (9%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVA------NLDEVVRIIRFSPNPETARRELMQRSW 422
           +  ++   L + +  A     +   +         + V  II  S     A     +++ 
Sbjct: 526 MRLQSLTGLEQEKIHAEYKELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQ 585

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEV-QTRAILELRLARLTGLGRDDIRNELNSLG 481
               I    + +         +  + L++    ++   +        G+     ++    
Sbjct: 586 ----IVANAENVKTKDLIPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKE-- 639

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I   L + ++   LL    +  L   +  D P  +   +G   +   +    E +   
Sbjct: 640 GDIINQLFVATTHDVLLCFTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAV 699

Query: 542 V----------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +                +  G VK+ P+  ++ QRR G   + + + + D +    +   
Sbjct: 700 LPISDEDYAKDLYIFMATADGTVKKTPIGDFKNQRRAG--INAINLLEGDVLVGAAVTDG 757

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              V+ FS  G V +     +      A G   +  + L++G+++ +++   +D     +
Sbjct: 758 KHDVMLFSDNGKVVRFSEDEVRAMGRAATG---VRGMRLDEGQKVISMLVCGDD----ED 810

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKL 702
           + V+ AT+ G  +R+ L+++ +  R  K  + +       +++S     + ++I+L T  
Sbjct: 811 VTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERNGKVVSALLVKENDEIILLTST 870

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ VR  ++ IRV  GRN+ GV  IS+ +G +++ +  V   D   +        +    
Sbjct: 871 GKLVRTRVNEIRVL-GRNTQGVTLISMEEGTKLVGLERVTENDDGDNASDNAAVEVEVVS 929

Query: 763 RLISGDTEEITSLKNDSSVEGNISE 787
              + + E     +     E N   
Sbjct: 930 ETEAEEAELEAKDEAILKEEENDEN 954


>gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713]
          Length = 850

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 552/898 (61%), Gaps = 84/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K
Sbjct: 6   NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP H
Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R  
Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM               
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q +AIL++RL RLTGL RD + NE +   + I +  DIL+ 
Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMVAIADYEDILAK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  II +ELL ++++    RRT ++   +L +EDED I  E++VVT++H GY+KR+P
Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     
Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  +IN+L ++  E+I T++  P D+   +  +Y+ F T+ G V+R  +S+F  I ++
Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE+++V       +I++ T  G  V F    IR   GR++ GVRGI L  
Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  AI+                                                  
Sbjct: 699 NDYVIGSAIL-------------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +  +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++
Sbjct: 709 ---EPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   +  + +E T
Sbjct: 764 DIMVITDKGVMIRFNISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 17/252 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +E  +  ++  G VKR  +S +   R+ G     + +RD D + ++       +++  + 
Sbjct: 612 KEMYLFFITRQGTVKRTSVSEFGNIRKNG--LKAITLRDGDELINVLATDDSKNIIIGTH 669

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+        +      A G   I         R+                 V   +++
Sbjct: 670 QGYAVSFDEKDIRSMGRSAAGVRGI---------RLRDNDYVIGSAILEPESKVFVISEN 720

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710
           G  ++   S++  I   G   +K  +  E    +  + T   + DI++ T  G  +RF I
Sbjct: 721 GYGKQTAASEYP-IKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFNI 779

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GR ++GVR I+L     V +M  V   D + +      +  +           
Sbjct: 780 SDVSE-TGRATLGVRLINLGADSIVSTMTKVEPEDENENSEETTQEVSTEISDDTKDSDV 838

Query: 771 EITSLKNDSSVE 782
                      E
Sbjct: 839 ARLLDAAQKDGE 850


>gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
 gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731]
          Length = 831

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/912 (39%), Positives = 519/912 (56%), Gaps = 89/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +            +  V + DEMQ  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MDDQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  NK Y K ARI G+V+GKYHPHG++++YDA+ R+AQD+S R L+++G GNFGSV
Sbjct: 61  NEAGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+ K A  +L D+ KDTVDF PNYD S +EP VL A+ P +L+NG  
Sbjct: 121 DGDPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSA 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD CV +ID+PD  ++ LM  ++GPDFPTGA ILG +GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKILGLSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +H+E    ++ +IVVTEIPYQVNKA ++E IA LV++K +  I DLR
Sbjct: 241 YTTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIEL+     +++LN+LY++T LQ  F + M+AL    P    L  IL+ 
Sbjct: 301 DESDRKGMRIVIELRSDVVPEIMLNKLYKHTQLQDSFGIIMLALVNGHPRILNLKQILEY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +++V+ R+ +Y L KA++RAH+L GL IA+ +LDEV+  IR S N E A+  LM++
Sbjct: 361 YLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALMEK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I +E   +
Sbjct: 421 --------------------------FGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEV 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I    D+LS   +++GI +++LL VK      RRT IV    D+E ED I  ED+V+
Sbjct: 455 MATIAYLEDVLSDEHKIMGIAREDLLDVKKRFGDARRTSIVPDTGDLETEDLIAEEDVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--------DEDFVTDLFIVSTHTSVLFF 592
           T+SH  Y+KR  L+ +R Q RGG+G      +          DF   L + STH ++LFF
Sbjct: 515 TISHQSYIKRQALTNFRNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY++K + +P  S  A+G  + N+L L + E++  ++      S     ++  AT
Sbjct: 575 TNRGRVYRQKGFEIPEASRTAKGTFIRNLLPLEENEKVNAVIAVKSGISEDEKKFLFMAT 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  +S+F    + G IA+ L   +E++ V+  +  NDILL T+ G  + F    
Sbjct: 635 NLGYVKRTSVSEFKSARKGGLIAINLGEGEELIDVKLTSGHNDILLATRDGYAIHFLEDD 694

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR S GVRGISL   D V+SM                                  
Sbjct: 695 VRPM-GRTSHGVRGISLRPHDSVVSMD--------------------------------- 720

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                      +LTV++KG GKRT   ++R+  R GKGI    V
Sbjct: 721 -------------------SCVDDTGEVLTVTDKGQGKRTDISEYRVQTRGGKGIINLKV 761

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +     G +V    +N+   I+L+S  G +IR+   +I    R  +GV +      ++V 
Sbjct: 762 TDR--TGLIVGSKFINETHDIMLISAAGIIIRMNAADISTYGRNAQGVKLMDLEAGDKVA 819

Query: 893 SVERIRESEIVD 904
           ++  +      +
Sbjct: 820 ALAIVNTVSEDE 831



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 101/248 (40%), Gaps = 31/248 (12%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE+++    +   ++    K     +F +S       R +  +  + L      
Sbjct: 392 IALDHLDEVIATIRASANGEV---AKAALMEKFGLSD------RQAQAILDMRLQRLTGL 442

Query: 731 -----KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                + +    MA +    A  ++ +     +    R    D ++       +S+  + 
Sbjct: 443 ERQKIEDEYKEVMATI----AYLEDVLSDEHKIMGIAREDLLDVKKRFGDARRTSIVPDT 498

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843
            +   ++L  +E  ++T+S + + KR +  +FR  NR G+GI+A     + E   +    
Sbjct: 499 GDLETEDLIAEEDVVITISHQSYIKRQALTNFRNQNRGGRGIKAGSGKIVKEDNKVKGDF 558

Query: 844 ---VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERI 897
              +   + +D I+  +++G + R    EI  ASR  KG  I +     ++E+V +V  +
Sbjct: 559 SEHLLMASTHDNILFFTNRGRVYRQKGFEIPEASRTAKGTFIRNLLPLEENEKVNAVIAV 618

Query: 898 RESEIVDE 905
           +     DE
Sbjct: 619 KSGISEDE 626


>gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
 gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC
           15579]
          Length = 846

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/890 (39%), Positives = 547/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNK+ ++E +A LV++K+I  I+D+RDESDRQG R+V
Sbjct: 243 AKAEIEEEK-GKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQVLNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN++ +   E+I T++   +     +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIINLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|21228522|ref|NP_634444.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
 gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1]
          Length = 900

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 551/891 (61%), Gaps = 86/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           G+T + I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M + G+  +K Y K 
Sbjct: 17  GVTPILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+YD + RM QD+SLR  LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 77  ARIVGDVLGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+ K+TV F PNYDGS +EP VL AR PN+L+NG  GIAVGMATN+P HN
Sbjct: 137 MDRIAEEMLVDIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV+DG + +I+NP+  +  LM +I+GPDFPTGA ILG  GI++AY TGRG I +R V+
Sbjct: 197 ISEVIDGILMLIENPETQISELMTVIKGPDFPTGAHILGTAGIRSAYMTGRGPIRMRAVA 256

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I++   DR+QI+VTE+PYQVNKA ++E IA+LVREK I  I+DLRDESDR+G RVV+EL
Sbjct: 257 EIQELKKDRQQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVVEL 316

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            RG + +V+LNQLY++T + + F V  +AL   KP+   L  +L+ ++ +R E++ +RT 
Sbjct: 317 SRGVNPNVVLNQLYKHTQMATTFGVINLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTL 376

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + A++ L+                
Sbjct: 377 YDLRKSEERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLI---------------- 420

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L EVQ +AILE+RL RLTGL    I +EL +L  +I+E   IL+S 
Sbjct: 421 ----------DNFALDEVQAKAILEMRLQRLTGLETRKILDELEALVKQIEELRKILASD 470

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
                II+ EL  +KD+    RRTRIV    ++ DED I  ED+VVT+++ GY+KR+PL 
Sbjct: 471 ELKYEIIRTELSELKDKYGDIRRTRIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLD 530

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  QRRGG+G  G+ M++EDFV +LFI STH  +LFF++ G +Y +KV+ +P GS Q+R
Sbjct: 531 TYTMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEGSRQSR 590

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L L +GE +  ++   E      + Y+  AT+ G V++  LS+F    R+G I
Sbjct: 591 GKAIVNLLELQEGEMVNAMISVEEFA---EDKYLFMATRAGTVKKTPLSEFRNPRRAGII 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           A+ LD  DE++ V     + +I++ +K G+ +RF    +R   GR + GVRG++L    D
Sbjct: 648 AVSLDEGDELVKVLLTDGKQEIMMVSKKGKAIRFSEEDVRPM-GRTARGVRGMTLEGPDD 706

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ +V                                                    
Sbjct: 707 EVVSLDLVDETTT----------------------------------------------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +LTV++ GFGKRT    + +  R GKG+     +  N  G +  V  V ++D++
Sbjct: 720 ------LLTVTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRN--GFVSNVKSVAEDDEL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +  S +G +IR+P  +I I  R T+GV + +    ++V  + RI+  +  +
Sbjct: 772 MFTSAEGIIIRIPAKDISIQGRNTQGVRVMNIKSGDKVGGMARIKNGKEDE 822



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 131/370 (35%), Gaps = 29/370 (7%)

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL--SEVQTRAILE 459
           RI+  + N         +           I  I   +YT+   G   +   E++    +E
Sbjct: 495 RIVHNTENVTDEDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGMEMKEEDFVE 554

Query: 460 LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
                 T        N       ++ E   I     +  G     LL +++         
Sbjct: 555 NLFISSTHNYILFFTNRGRLYWQKVYE---IPEGSRQSRGKAIVNLLELQEG-------- 603

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                  +  E+    + + +  +  G VK+ PLS +R  RR G     V + + D +  
Sbjct: 604 -EMVNAMISVEEFAEDKYLFMA-TRAGTVKKTPLSEFRNPRRAG--IIAVSLDEGDELVK 659

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           + +      ++  S  G   +     +      ARG   +  ++L   +     +   + 
Sbjct: 660 VLLTDGKQEIMMVSKKGKAIRFSEEDVRPMGRTARG---VRGMTLEGPDDEVVSLDLVD- 715

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDI 696
                   ++  T +G  +R + S +    R GK  + + +      V       +++++
Sbjct: 716 ----ETTTLLTVTDNGFGKRTEYSQYPVHRRGGKGVITIVTNLRNGFVSNVKSVAEDDEL 771

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           + T+  G  +R P   I    GRN+ GVR +++  GD+V  MA + +   D   ++  + 
Sbjct: 772 MFTSAEGIIIRIPAKDI-SIQGRNTQGVRVMNIKSGDKVGGMARIKNGKEDEKLKLTALA 830

Query: 757 HMSAQRRLIS 766
             +A+ ++  
Sbjct: 831 KKAAKEKVPG 840


>gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1]
 gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 853

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/906 (38%), Positives = 543/906 (59%), Gaps = 84/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I+ V+++  M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+     ++DNPD  +  LME++ GPDFPTG +++G++GI+ AY TGR
Sbjct: 181 MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I++R    I+     +++I+VTE+PY VNKA ++E+IA L R+K I  I D+ DESDR
Sbjct: 241 GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+++R ASA VILN LY+ T +Q+ F  NM+A+    P+  +L  IL  ++  +
Sbjct: 301 EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+V+ RRT++ L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+ +LM       
Sbjct: 361 EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLM------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL R+ I +E   L   I 
Sbjct: 414 -------------------DNYGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSH 544
           +  +IL+S+ R+  II +EL+ ++ +    RRT ++ G +   +++ ++ E+ V VT++H
Sbjct: 455 DYKEILASKDRINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P + +++Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPTTEFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L +N GE+I  ++    D S+ +N Y+ F T  G V+R  + +
Sbjct: 575 EIPEYGRTAKGIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE++ V       ++++ T  G  V F  + +R   GR + GV
Sbjct: 634 FANIRSNGLKAITLKDDDELIGVTITDGHQNVIIGTHDGYAVSFDETTVRSM-GRTASGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D VI   ++                                           
Sbjct: 693 RGIRLRDDDFVIGFDVLKP----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +  ++EKG+GK+T + D+ I  R GKGI+  +V++ N  G L  +
Sbjct: 712 ------------DSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  + I++++++G +IR  +  +    RAT GV +     D +V ++ ++     VD
Sbjct: 758 TTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVD 817

Query: 905 EAESTE 910
           E  +T+
Sbjct: 818 ETVATD 823


>gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
 gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01]
          Length = 811

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/891 (41%), Positives = 546/891 (61%), Gaps = 86/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK Y K
Sbjct: 5   ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG+AAIYD + RMAQD+SLR  L++GQGNFGS+DGDP AA RYTE 
Sbjct: 65  SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK AH +L+DL K+TVDF PNYD + QEP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+ D   A+I+NP +  + L++ + GPDFPTG +I GR GI +AY+TGRG I IR  
Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGGIIYGRAGIHSAYSTGRGIIKIRAR 244

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             +E      +E +VVTE+PYQVNKA ++EKIA L+++K I  +A +RDESDR+G R+ +
Sbjct: 245 IMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIAM 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            LK+   A +I+N+LY++T L++ F + ++++   +PE   L   L+ F+A R+ VV+RR
Sbjct: 305 GLKKDEMASIIINKLYKHTQLENSFGIILLSIVNNRPELLNLKETLQYFIAHRKVVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L KA  RAH+L G  IA+ NLDEVV++IR S  P  AR  LM R            
Sbjct: 365 TKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMAR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+++Q +AIL++RL +LTGL  + +  E   L   I    +IL+
Sbjct: 413 --------------FDLTQIQAQAILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L I++ ELL V+ E    RRT IV+   ++  ED IV EDMVVT+SH GY+KR P
Sbjct: 459 SDQLVLEIVRDELLEVRTEYVDERRTEIVDDEGEITIEDMIVEEDMVVTISHRGYIKRNP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L++Y +QRRGGKG+ G+   DEDFV+ LF+ STH ++LFF++LG VY  KV+ +P     
Sbjct: 519 LTLYHSQRRGGKGKIGMGTGDEDFVSRLFVASTHNTLLFFTNLGRVYWRKVYEIPQAGRA 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+GK + N+L+L   E++ T++   E E  +N   ++ ATK G +++  L  +     +G
Sbjct: 579 AKGKFISNLLNLAPDEQLATVLDVKEFEPGYN---IIMATKDGIIKKTDLLAYSNPRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   D++++        ++ L +  G+ +RF  S +R   GR S GV+G++LA G
Sbjct: 636 IIALSLGEGDQLIAARISDGTQNVFLGSAFGKSIRFHESDVRAM-GRVSRGVKGMTLAAG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D ++ M                                                     E
Sbjct: 695 DHLVGM-----------------------------------------------------E 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    + + + +E GFGKRTS  ++ +  R GKG+      + N  GA+V++  V+++D 
Sbjct: 702 VLTHGKTLFSCTENGFGKRTSLDEYPLQKRGGKGVITIRTHERN--GAVVSILVVSNDDD 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++L++D G +IR+P+ +I + SR T GV +      E+++  +R+ E +  
Sbjct: 760 LMLMTDAGKIIRMPMGDISVISRNTMGVRLMGMEPGEKLIGAQRLAEKDEE 810


>gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
 gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1]
          Length = 899

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/921 (41%), Positives = 550/921 (59%), Gaps = 83/921 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              ++ ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M Q+  ++NK Y 
Sbjct: 2   SDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR  +++GQGNFGS+D DP AA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  
Sbjct: 122 VRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  DNP+I  + L   I GPDFPTG +I GR+GI +AY TG+G + IRG
Sbjct: 182 HNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIYGRSGIVDAYRTGKGRLHIRG 241

Query: 253 VSHIEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             HIE  S      DRE+IV TEIPYQ NKA ++E+IAELVR+K+I  I+++RDESD+ G
Sbjct: 242 RYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDKDG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+L+RG  A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+E
Sbjct: 302 MRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQPKLMTLRQLIAAFVRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA+ R H+L GL +A+AN+D+++  I+ S N   AR +L+ + W++  +
Sbjct: 362 VVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDSGTV 421

Query: 428 KDLI-----------------------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
             ++                       + + +    I       LS  Q  AILE++L R
Sbjct: 422 VAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQLHR 481

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           LTGL +D +  E   L  +I E   IL+   +L+ +IK E+L + +     RRT IV+  
Sbjct: 482 LTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIVDSR 541

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            D   ED I  + +V+TVS  GY K  P+S Y AQ+RGGKG+S   M+++D +  L + S
Sbjct: 542 TDFSREDLIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAMKEDDVIDHLVVTS 601

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH +VL F+  G V+  + + +PI S  ARG+ L+NI+ L   E +TTI+P P      +
Sbjct: 602 THATVLCFTDNGRVFSLRGFEVPIASRGARGRPLVNIIGLEPDEIVTTILPIPNLSEEID 661

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           + +V FAT +G V+R +LS F  I  +G IA+ L+  D+++S      E  ++L    G+
Sbjct: 662 SHFVFFATANGTVKRVELSQFANIRSNGLIAIGLEEGDKLVSARITNGEQQVMLFASSGK 721

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF  +  RV  GR + GVRG+ +A  + + S+ ++                       
Sbjct: 722 AIRFDENDARVM-GRTAKGVRGMRIANDEFIKSLVVIEEDV------------------- 761

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                            Q IL   E G+GKRT   +F   NR G
Sbjct: 762 ---------------------------------QEILIACENGYGKRTPVDEFNAQNRGG 788

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+ A   S+ N  GALV    V   D IIL+S+KGTL+R PV ++  + R T+GV +  
Sbjct: 789 GGVIAIKTSERN--GALVRATKVQPEDDIILISNKGTLVRTPVAQVATSGRNTQGVTLIR 846

Query: 885 TAKDERVVSVERIRESEIVDE 905
            +KDE +V++ R+ ++   DE
Sbjct: 847 LSKDEALVAMARVEDTGEEDE 867



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 103/248 (41%), Gaps = 14/248 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               V   +  G VKRV LS +   R  G     + + + D +    I +    V+ F+S
Sbjct: 661 DSHFVFFATANGTVKRVELSQFANIRSNG--LIAIGLEEGDKLVSARITNGEQQVMLFAS 718

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +       +    A+G   +  + +   E I +++   ED        ++ A ++
Sbjct: 719 SGKAIRFDENDARVMGRTAKG---VRGMRIANDEFIKSLVVIEEDVQE-----ILIACEN 770

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + +F   NR G   + + + +     +       E+DI+L +  G  VR P++
Sbjct: 771 GYGKRTPVDEFNAQNRGGGGVIAIKTSERNGALVRATKVQPEDDIILISNKGTLVRTPVA 830

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +   +GRN+ GV  I L+K + +++MA V     + +     +++      ++  D + 
Sbjct: 831 QV-ATSGRNTQGVTLIRLSKDEALVAMARVEDTGEEDELVEAMIENGLLTGDVLDADKDS 889

Query: 772 ITSLKNDS 779
                +D+
Sbjct: 890 DVVDHSDT 897


>gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
 gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1]
          Length = 853

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/906 (38%), Positives = 543/906 (59%), Gaps = 84/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I+ V+++  M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MADSDLSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ KDTVD++PNYD + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+     ++DNPD  +  LME++ GPDFPTG +++G++GI+ AY TGR
Sbjct: 181 MTTNIPPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVMGKSGIRKAYQTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I++R    I+     +++I+VTE+PY VNKA ++E+IA L R+K I  I D+ DESDR
Sbjct: 241 GNIIVRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+++R ASA VILN LY+ T +Q+ F  NM+A+    P+  +L  IL  ++  +
Sbjct: 301 EGMRIVIDVRRDASASVILNNLYKMTLMQTNFGFNMLAIVKGAPKVLSLKQILIYYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+V+ RRT++ L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+ +LM       
Sbjct: 361 EDVIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLM------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL R+ I +E   L   I 
Sbjct: 414 -------------------DNYGLSDKQAQAILDMRLVRLTGLEREKIESEYQDLLKAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSH 544
           +  +IL+S+ R+  II +EL+ ++ +    RRT ++ G +   +++ ++ E+ V VT++H
Sbjct: 455 DYKEILASKDRINQIIYEELMEIQRKFGDKRRTELMVGEVLSIEDEDLIEEEEVAVTLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P + +++Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPTTEFKSQHRGGRGIQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L +N GE+I  ++    D S+ +N Y+ F T  G V+R  + +
Sbjct: 575 EIPEYGRTAKGIPVINLLGVNSGEKIQAVVNVTGDASASDN-YLFFTTVKGVVKRTPVQE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE++ V       +I++ T  G  V F  + +R   GR + GV
Sbjct: 634 FANIRSNGLKAITLKDDDELIGVTITDGHQNIIIGTHDGYAVSFDETTVRSM-GRTASGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D VI   ++                                           
Sbjct: 693 RGIRLRDDDFVIGFDVLKP----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +  ++EKG+GK+T + D+ I  R GKGI+  +V++ N  G L  +
Sbjct: 712 ------------DSNVFIITEKGYGKQTPAADYPIKGRGGKGIKTANVTEKN--GHLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+  + I++++++G +IR  +  +    RAT GV +     D +V ++ ++     VD
Sbjct: 758 TTVDGQEDIMVMTNQGVMIRFNIATVSQTGRATLGVRLMRLGDDGQVATMAKVDPEPEVD 817

Query: 905 EAESTE 910
           E  +T+
Sbjct: 818 ETVATD 823


>gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424]
 gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424]
          Length = 853

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/903 (41%), Positives = 541/903 (59%), Gaps = 62/903 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    ++ EM  SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+  ++ + K
Sbjct: 6   ERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LIEG GNFGS+D DPPAA RYTE 
Sbjct: 66  CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTES 125

Query: 134 RLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RLQ  +   LL D+  +TVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP 
Sbjct: 126 RLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE+VDG +A+I NP+I    LM+ I GPDFPTGA ILGR+GIK+AY  GRGSI +RG
Sbjct: 186 HNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQILGRSGIKDAYTNGRGSITMRG 245

Query: 253 VSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+ IE         RE I+VTE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR G 
Sbjct: 246 VAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDGM 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A   V+LN LY+ T +Q+ F  NM+AL   +P+  TL   L+ F+ FR EV
Sbjct: 306 RIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGEPQVLTLKDFLEVFLDFRVEV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT Y L KA +R HVL GL +A+ANLD ++++IR + +  TA+REL+ +        
Sbjct: 366 ITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQ-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSEVQ  AIL+++L RLT L  + I+ E   L  +I +  
Sbjct: 418 ------------------FGLSEVQADAILQMQLRRLTALESEKIQAEHEELLQKITDLR 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL  R R+  II++EL  +K    TPRRT I++   ++ D D I  E  V+ ++  GY+
Sbjct: 460 DILERRERVDHIIEEELNQLKTTHATPRRTEIIQEDGELIDLDLIANEQAVILLTEQGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S +  Q R  +G+S   ++++D V        H  +LFFS  G VY    +++P 
Sbjct: 520 KRMPVSTFGQQSRATRGKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPS 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG  ++ +L + + E+IT+++   E      + Y++  T+ G +++  LS +  I
Sbjct: 580 SSRTARGVPIVQMLPIPKNEKITSMLAVSEFS---EDCYLIMLTRQGYIKKTVLSAYSNI 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRG 726
             +G IA+ L   D++  V    +E+ I++ T+ G  + F      +R   GR + GV+ 
Sbjct: 637 RANGLIAITLSEGDQLRWVRLAREEDSIIIGTRKGMAIHFKADSEQLRP-TGRTARGVKS 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++IS+ I+                        S     I + +++   E   +
Sbjct: 696 MKLKGTDEIISVDILP-----------------------SQVVANIATSEDEVEDETLET 732

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           EE   E      ++L ++  G+GKR     FR+  R+G G++A      N+   LVA+  
Sbjct: 733 EEIISEETNVGPWVLAITTGGYGKRVPVSQFRLQKRAGMGVKAIRF--KNDHDQLVAIHV 790

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN +D++++V+++G +IR  V+ I   SR   GV +    +D+ + +V  +  S   ++ 
Sbjct: 791 VNQDDEMMMVTNRGIIIRQAVDAITPQSRMATGVRVQRLDEDDAIAAVALVPPSAEGEDP 850

Query: 907 EST 909
           ES 
Sbjct: 851 ESE 853


>gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
 gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C]
          Length = 850

 Score =  877 bits (2265), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/896 (41%), Positives = 553/896 (61%), Gaps = 85/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV     +
Sbjct: 3   EGEKLIKINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLIDIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A I+NP+I++D L+  I+ PDFPTG VI G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIENPNIEIDELITHIKAPDFPTGGVIFGYEGVKEAFHTGRGRVVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    +E I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKAIIEEVQ-GKECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YTSLQS FSVN +AL   +P++  +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLYKYTSLQSSFSVNNIALVNGRPQQLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA DRAH+L GL IA  N+DEV+++IR S +P+ AR  LM+R           
Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E N +   I +  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYNDIIATIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  VK +    RR+ I      +  ED I  E +V+T+SH GY+KR 
Sbjct: 456 GDKERRMSIIKEELQEVKTKYGDARRSEINYAGGSLSIEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 ALSEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQSGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++++Q +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINISQEDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTTLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + + L  K G+ +RF  S  R   GR + GVRG+SL
Sbjct: 636 TNGINAIGVREGDELLEAKLTTGTSQVFLGLKSGKAIRFEESKTRPM-GRGASGVRGVSL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V + +                                           
Sbjct: 695 ANDQDEVIGMITVHNEED------------------------------------------ 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R++NR GKG++   +++  + G LVA+  V 
Sbjct: 713 ----------HILVVSEKGYGKRSSMEDYRVTNRGGKGVKTISITE--KTGGLVAIKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D+D +++++  G  IR+ V ++R+  RAT+GV + +  +++ + +V ++ + E  +
Sbjct: 761 DSDDLMIINKSGIAIRLGVEDLRVMGRATQGVKLINIRENDSIAAVAKVMKEEEEE 816


>gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 836

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/903 (40%), Positives = 543/903 (60%), Gaps = 83/903 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++EE    IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   AEEEMSNRITDVKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKIAVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     ++DNPD   + LM+++ GPDFPTG V+LG++GI+ AY TG+G+
Sbjct: 182 TNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVLGKSGIRKAYETGKGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+T   R+QI+V EIPY VNKA ++E+IAEL REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVDIEETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL  ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTMMQTTFNFNMLAIVKGAPKILSLKEILTYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL IA+ ++DE+++IIR S   E A+ ELM +       
Sbjct: 362 VVRRRTEFELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSK------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL++RL RLTGL R+ I  E   L   I + 
Sbjct: 415 -------------------YGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMEAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLG 546
            DIL+ R R+  II  EL  ++      RRT +  G +   EDED I ++D+VVT++H G
Sbjct: 456 KDILAHRERIQQIIYDELKEIQRRFGDARRTELQVGDITNLEDEDLIEQQDIVVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YIKRLPVDEFKSQNRGGRGVKGMGVHSDDFIEHLISSSTHDMLLFFTNSGKVFSMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E+I  ++          +  + F TK G V+R  + +F 
Sbjct: 576 PEYGRSAQGIPIINLLGIDAKEKINAVINVSNTAEEDADRDLFFVTKQGVVKRTAVEEFK 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++VE    + ++++ T  G  V F  SA+R   GR + GVRG
Sbjct: 636 NIRSNGLKAINLHDGDELIAVEIIDHDQNMIIGTHEGYAVSFSASAVRSM-GRAAAGVRG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD VI    +                                             
Sbjct: 695 VRLREGDFVIGAGQLNP------------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L +SEKGFGK+T + ++ I  R GKGI+  +V++ N  G L  +  
Sbjct: 712 ----------DSRVLVISEKGFGKQTPAAEYPIKGRGGKGIKTVNVTEKN--GPLAGLTT 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+ ++ I+LV+ +G +IR  V  +    RAT GV +       +V ++ R+ + E  D+ 
Sbjct: 760 VDGDEDIMLVTTEGVIIRFGVETVSETGRATIGVHLIKLTDGSKVATMTRVAKEEAADDE 819

Query: 907 EST 909
           +  
Sbjct: 820 QPD 822


>gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
 gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741]
          Length = 850

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/898 (40%), Positives = 551/898 (61%), Gaps = 84/898 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K
Sbjct: 6   NRIKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGK+HPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    +L D+ KDT+DF+PNYDG+ +EPVVL AR+PN+LVNG  GIAVGM TNIP H
Sbjct: 126 RMSKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+G++ +R  
Sbjct: 186 NLGEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVMGKSGIRKAYETGKGTVTLRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I++ +  ++QIVV E+PY VNKA ++E+IAEL REK+I  I D++DESDR+G RV I+
Sbjct: 246 VEIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTID 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           ++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV+ RRT
Sbjct: 306 VRRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNGTPKILSLKQILQYYLKHQEEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+ ++D ++ IIR S +P+ A+  LM               
Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNE------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q +AIL++RL RLTGL RD + NE +     I +  DIL+ 
Sbjct: 413 -------------YQLSDKQAQAILDMRLVRLTGLERDKVENEYSKTMAAIADYEDILAK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  II +ELL ++++    RRT ++   +L +EDED I  E++VVT++H GY+KR+P
Sbjct: 460 PERIDKIIYEELLEIQEKFGDERRTELMVGEVLSIEDEDLIEEENVVVTLTHNGYIKRLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S ++AQ RGG+G  G+ + D+DF+  L   STH  +LFF+++G VY+ K + +P     
Sbjct: 520 TSDFKAQNRGGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKAYEIPEYGRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQINRS 671
           A+G  +IN+L ++  E+I T++  P D+   +  +Y+ F T+ G V+R  +S+F  I ++
Sbjct: 580 AKGIPVINLLDISADEKIQTVINIPADKVQTDKEMYLFFITRQGTVKRTSVSEFGNIRKN 639

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE+++V       +I++ T  G  V F    IR   GR++ GVRGI L  
Sbjct: 640 GLKAITLRDGDELINVLATDDSKNIIIGTHQGYAVSFDEKDIRSM-GRSAAGVRGIRLRD 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  AI+                                                  
Sbjct: 699 NDYVIGSAIL-------------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +  +SE G+GK+T++ ++ I  R GKGI+ T++++ N  G L  +  VN ++
Sbjct: 709 ---EPESKVFVISENGYGKQTAASEYPIKGRGGKGIKTTNITEKN--GPLAGLTTVNGDE 763

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I++++DKG +IR  ++++    RAT GV + +   D  V ++ ++   +  + +E T
Sbjct: 764 DIMVITDKGVMIRFKISDVSETGRATLGVRLINLGADSIVSTMTKVEPEDENENSEET 821



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 17/252 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +E  +  ++  G VKR  +S +   R+ G     + +RD D + ++       +++  + 
Sbjct: 612 KEMYLFFITRQGTVKRTSVSEFGNIRKNG--LKAITLRDGDELINVLATDDSKNIIIGTH 669

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+        +      A G   I         R+                 V   +++
Sbjct: 670 QGYAVSFDEKDIRSMGRSAAGVRGI---------RLRDNDYVIGSAILEPESKVFVISEN 720

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710
           G  ++   S++  I   G   +K  +  E    +  + T   + DI++ T  G  +RF I
Sbjct: 721 GYGKQTAASEYP-IKGRGGKGIKTTNITEKNGPLAGLTTVNGDEDIMVITDKGVMIRFKI 779

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GR ++GVR I+L     V +M  V   D + +      +  +           
Sbjct: 780 SDVSE-TGRATLGVRLINLGADSIVSTMTKVEPEDENENSEETTQEVSTEISDDTKDSDV 838

Query: 771 EITSLKNDSSVE 782
                      E
Sbjct: 839 ARLLDAAQKDDE 850


>gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 826

 Score =  876 bits (2264), Expect = 0.0,   Method: Composition-based stats.
 Identities = 395/893 (44%), Positives = 556/893 (62%), Gaps = 87/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  V I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR L+GM ++G   +K Y K
Sbjct: 19  ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+VMGKYHPHG+AAIYD + RMAQD+SLR  L++GQGNFGS+DGD  AA RYTE 
Sbjct: 79  SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL++ A  +L DL K+TVDF PN+D + +EPVVL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +AVIDNP+I+   L+  ++GPDFPT   I G+ GIK AY TGRGSI +R  
Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIYGKEGIKEAYLTGRGSIRMRAK 258

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I      +  I+VTEIPY VNKA ++E IA+LV++K+I  I+DLRDESDR G R+VIE
Sbjct: 259 AEIVD-ENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIE 317

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+A+VILNQL+++T ++S F VN +AL    P   +L   +  F+  R+EVV RR+
Sbjct: 318 LKKAANANVILNQLFKHTQMESTFGVNNIALVDNTPMTLSLKETIGYFIKHRQEVVTRRS 377

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ R H+L GL IA+ N+D+ VRIIR S N + A+  LM++             
Sbjct: 378 QFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEK------------- 424

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS+ Q+RAIL++RLARLT L R  I +E   L  EI    ++L+S
Sbjct: 425 -------------YGLSDEQSRAILDMRLARLTALERQKIDDERADLIKEIAHLNEVLAS 471

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              +L IIK ELL +K +    RRT+IVE   ++ DED I  E++VVT+S+ GY+KR+P+
Sbjct: 472 PQMVLDIIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVENVVVTISNTGYIKRMPV 531

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQ 612
             YR QRRGG G  G+  ++EDFV DLF+ STH ++LFFS+ G VY  KV+ +P   S Q
Sbjct: 532 DTYRTQRRGGVGIVGMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQ 591

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARGKA+IN++++  GE I  ++P    +   +  ++V  T+ G +++  LS F  I  +G
Sbjct: 592 ARGKAIINLINIEPGEAINAMIPIKTFD---DQHFLVMCTREGTIKKTALSAFQNIRSTG 648

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+S DE++SV+      ++L+ T+ G+C RF  S +R   GR ++GV GI L + 
Sbjct: 649 IIAIGLESGDELISVKMTNGSQEVLIATRNGKCNRFSESEVRTM-GRPAMGVIGIRLTEN 707

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI+M IV                                                   
Sbjct: 708 DKVIAMEIVSPG------------------------------------------------ 719

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q +LT+ E GFGKRT   ++   +R G+G+     +  N  GA+VAV  V  +DQ
Sbjct: 720 -----QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRN--GAVVAVISVMPDDQ 772

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I++ S +G + R+ V +I    R T+GV +     ++ VV+V R+   +  DE
Sbjct: 773 IVIASKEGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKEDE 825


>gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis
           WY96-3418]
          Length = 868

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   IK  
Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRIKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
 gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2]
          Length = 837

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/901 (42%), Positives = 561/901 (62%), Gaps = 87/901 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E    +          +SI  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MVETDKPALPPT------ISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   +N+ ++K ARI G+V+GKYHPHG++A+YD L RMAQ +S+R  L++GQGNFGSV
Sbjct: 55  RELNNYYNRPFLKSARIVGDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ +    L+ DL K+TVDF PNYD S  EP+VL AR PN+L+NG  
Sbjct: 115 DGDPPAAMRYTEARMTRIDQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG +A+I++P+I + ALME I GPDFPTGA I GR GI+ A
Sbjct: 175 GIAVGMATNIPPHNLREVIDGLIAMIEDPNITVSALMEHISGPDFPTGAYICGRAGIREA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+++R    +EK    RE I++TEIPYQ NK  ++E+IA LV+EK+I  I+++R
Sbjct: 235 YETGRGSLMLRSRCEVEKQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVR 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDRQG R+V++LK+  +A+V++NQLY+ T LQ  + + ++++   +PE   L  IL+ 
Sbjct: 295 DESDRQGMRIVLDLKKDENAEVVINQLYKMTPLQRGYGIILLSIVNNRPEILNLRQILEH 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ VV RRT + L KA ++AH+L GL IA+ NLDEVV +I+ S NP  AR  L+ R
Sbjct: 355 FILHRKTVVYRRTAHDLRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINR 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS +Q +AILE+RL RLTGL R+ I  E  +L
Sbjct: 415 --------------------------FALSAIQAQAILEMRLHRLTGLEREKIIEEYQAL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+    +L+  S +L II+QE  +++++    RRT I+E   ++  ED I REDMVV
Sbjct: 449 MKEIEWLRRVLADESLVLQIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVV 508

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H GY+KR P+ +YRAQRRGGKG  G    D+DF++ + + STH ++LFF++ G V+ 
Sbjct: 509 TVTHAGYIKRNPVDLYRAQRRGGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFW 568

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRR 659
            KV+ +P     ARGKA++N+L L   E++  I+P    E       Y++ AT+ G V++
Sbjct: 569 RKVYEIPQAGRLARGKAVVNLLDLAPEEKLAAILPVQSFEVPEGRECYILMATRKGVVKK 628

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + +F +  R GKIA+     DEIL+      +N+ILL ++ G  VRF    IR   GR
Sbjct: 629 TTIQEFSRPVRRGKIALTFREDDEILAAALTYGDNEILLLSRKGMAVRFHEGDIRPM-GR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI+L   D+++ ++++                                      
Sbjct: 688 GATGVRGINLGSADELVGVSVLS------------------------------------- 710

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  IL V+E G+GKRT   ++R+  R GKG+ A   S+ N  G
Sbjct: 711 --------------GDPETSILVVTENGYGKRTLVDEYRLIRRGGKGVMAIKASERN--G 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           A+V +  V D DQ++++++ G +IR+P+ ++R+  R T+GV +F+   +E+VV+++R+ E
Sbjct: 755 AVVGMLQVTDEDQVMMITNAGQIIRMPMTDLRVIGRNTQGVRLFNLGAEEKVVALDRLAE 814

Query: 900 S 900
           S
Sbjct: 815 S 815



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 78/217 (35%), Gaps = 20/217 (9%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754
           + G   RF +SAI+      +  +  + L      + +++I     ++         +  
Sbjct: 408 REGLINRFALSAIQ------AQAILEMRLHRLTGLEREKIIEEYQALMKEIEWLRRVLAD 461

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
              +    R       E    +  + +     E   +++  +E  ++TV+  G+ KR   
Sbjct: 462 ESLVLQIIRQEFEAIREQYGDERRTEIIEAPDEILPEDMIAREDMVVTVTHAGYIKRNPV 521

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIA 873
             +R   R                   ++   V    D ++  +++G +    V EI  A
Sbjct: 522 DLYRAQRR----GGKGIRGAGGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQA 577

Query: 874 SRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907
            R  +G   V +   A +E++ ++  ++  E+ +  E
Sbjct: 578 GRLARGKAVVNLLDLAPEEKLAAILPVQSFEVPEGRE 614


>gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 864

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/913 (41%), Positives = 567/913 (62%), Gaps = 72/913 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y
Sbjct: 4   PTKESSSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK  H LL D+ K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 124 EIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++G +A+IDN  + ++ L++ I  PDFPTG+ I G  GI  AY TGRG +++R
Sbjct: 184 PHNMTEVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMR 243

Query: 252 GVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             +   E  +  + QIV+TEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RV
Sbjct: 244 AKADIHEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV 
Sbjct: 304 VIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +
Sbjct: 364 RRTIFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSM 423

Query: 431 IDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++ +D          S Y I +D +  L+E Q  AIL LRL RLTGL +D I NE   L 
Sbjct: 424 LEGVDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELI 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             IK  + ILS  S L+ ++K+EL+ ++D     R++ I+   LD+  ED I  EDMVVT
Sbjct: 484 ERIKYLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  
Sbjct: 544 LSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWS 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+  P+ S  ++G+ + NIL L++ ERIT +MP  E    W   YV  +TK G V++  
Sbjct: 604 KVYDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVD 660

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS+F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++
Sbjct: 661 LSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSA 719

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV G+ L    +++S+ +                                         
Sbjct: 720 AGVTGMRLHDNQKIVSVIVTNPD------------------------------------- 742

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +
Sbjct: 743 ---------------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKV 785

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++++ I++++D GTL+R   +++R   R+ +GV + +   +E+++S++ +++ +
Sbjct: 786 VVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845

Query: 902 I----VDEAESTE 910
                  E ES+E
Sbjct: 846 EETHDDQELESSE 858



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   + LG VK+V LS +   R  GK    + + D D ++ + +   +  ++ FS  G 
Sbjct: 646 YVFMSTKLGRVKKVDLSEFARPRSTGKI--AIGLNDGDELSYVALTDGNKQIMMFSDAGK 703

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      A   A +  + L+  ++I +++         +   V+ AT++G  
Sbjct: 704 AIRFDESDVRAMGRSA---AGVTGMRLHDNQKIVSVIVTN-----PDEGVVLAATENGYG 755

Query: 658 RRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  +S++ +  R   G IA+       +++       + DI++ T  G  VR     +R
Sbjct: 756 KRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVR 815

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
              GR++ GVR I+L   +++IS+ +V   D +  +        + ++  
Sbjct: 816 EC-GRSAQGVRLINLRNNEKLISLKVVKQEDEETHDDQELESSEATEQSE 864


>gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
 gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1]
          Length = 812

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/891 (41%), Positives = 550/891 (61%), Gaps = 85/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G   +K Y K 
Sbjct: 7   KVVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + G+VMG+YHPHG++AIYDA  R+AQD+S R +LI+G GNFGS+DGDP AA RYTE R
Sbjct: 67  AGLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K   ++L D+ K+TVDF+PNYD   +EP VL +R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MAKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++D  + +I+NP   ++ LM +++GPDFPTGA+I+GR GI+ AY TGRGSI++R  +
Sbjct: 187 LAEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIMGREGIRQAYTTGRGSIIMRAKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK +G++ +I+V EIPYQVNK+ +LE+IAELVR+KR+  I DLRDESDR+G ++VIEL
Sbjct: 247 RIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +  ++LNQL++YT +Q  F V M+AL    P+   L  +L  ++  +++V+VRRT+
Sbjct: 307 RRDVNPQIVLNQLFKYTQMQETFGVIMLALVDGVPKVLNLRDMLYYYLEHQKDVIVRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA  RAH+L GL IA+ N+D ++ IIR S + + AR  LM                
Sbjct: 367 YDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILM---------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                     G   LSE Q +AIL++RL RL GL R+ I NE   L   I     +L S 
Sbjct: 411 ----------GEFNLSEKQAQAILDMRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +L IIK+E+  +K++   PRRT I     D++ ED I  ED V+T++H GY+KR+P++
Sbjct: 461 KMVLDIIKKEISEIKEKFADPRRTEITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVN 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+AQRRGG+G +G+  +++DFV  LF+ +TH ++LFF+  G VY+ K   +P  S  A+
Sbjct: 521 TYKAQRRGGRGVTGMGTKEDDFVEHLFVTTTHHTLLFFTDRGKVYRLKTHEIPEASRTAK 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L++   E++  ++P  E      + Y+  AT+ G V++  L  +  + + G I
Sbjct: 581 GTAIVNLLAITGDEKVNAVIPVKEFA---ADQYLFTATRSGIVKKTSLQHYDTVRKEGLI 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++ V+    ++DILL T+ G  VRF  + +R   GR + GV+GI L +GD 
Sbjct: 638 ALTLDEGDELIGVKLTDGKSDILLATRNGMAVRFNETNVREM-GRTARGVKGIELTQGDF 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+++  V   D                                                 
Sbjct: 697 VVALDAVKDDD------------------------------------------------- 707

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L ++E G GKRT   ++R  NR GKGI A  ++  N+ G +  +  V   D+++
Sbjct: 708 ----ELLMITELGMGKRTPLSEYRKQNRGGKGILAMRLT--NKTGLMAGIKVVRPGDELM 761

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++S +G +IR+ V+EI + SR T+GV I     +++VV++ R+   E  +E
Sbjct: 762 VISAEGVIIRLNVDEINVLSRVTQGVSIMRMNANDKVVALARVAMREEDEE 812


>gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 835

 Score =  876 bits (2263), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/886 (41%), Positives = 544/886 (61%), Gaps = 86/886 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K Y
Sbjct: 5   NEGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+S+R +L++G GNFGSVDGD  AA RYT
Sbjct: 65  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  QEPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 125 EAKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG + +IDNP++ +  LM  I+GPDFPTGA I+G+ GI+ AY TGRG IV+R
Sbjct: 185 PHNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIMGKAGIRAAYETGRGKIVVR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +IVVTEIPYQVNKA ++E IA+LV++K+I  I+DLRDESDR G R+V
Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+ +V+LN LY++T LQ  F V M+AL   +P    +  IL  ++ +++EV+ R
Sbjct: 304 VELKRDANPNVVLNLLYKHTKLQDSFGVIMLALVNNEPRVLNIKEILSNYIDYQKEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + LNKA  RAH+L GL IA+ N+DEV+ IIR S   E A+  LM++           
Sbjct: 364 RTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q  AILE+RL RLTGL R+ I  E   L  +I+    IL
Sbjct: 413 ---------------FALSDKQATAILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  +LLG+IK EL  +K +    RRT+I + + +++ ED I  ED+V+T+++ GY+KR+
Sbjct: 458 ASEEKLLGVIKDELSDIKAKYSDERRTKIEKVVNEIDIEDLIQEEDVVITLTNSGYIKRI 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y AQRRGGKG   +  +++DFV  + I STH+ VLFF++ G VYK + + +P    
Sbjct: 518 SADTYSAQRRGGKGIQAMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           QA+G  +IN++++   E+I T++   +        ++  ATK+G V++  +S+F  + ++
Sbjct: 578 QAKGTNVINLIAIEPDEKIQTVLTVSD---GKKEGFLFMATKNGIVKKTHISEFKNLRKN 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L V+    + +I++ T+ G  VRF    +R   GR + GV+ I+L  
Sbjct: 635 GLIALSLKDNDELLKVKNTYGDANIMIVTQNGYAVRFNEKNVRAM-GRTASGVKAINLKD 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  + M I +  +                                              
Sbjct: 694 DDVAVCMDIAVDGE---------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L +SE GFGKRT   ++++ NR G G+    +S+  + G L        +D
Sbjct: 708 -------ELLVISENGFGKRTPVSEYKVQNRGGVGLITYKISE--KTGKLTGATICKVDD 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++L++  G  IR+ V +I + +R+  GV +  T +DE+VV++ +I
Sbjct: 759 ELMLINSSGVAIRINVADISVTNRSAMGVTLMRTTEDEKVVAIAKI 804


>gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 864

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/913 (41%), Positives = 566/913 (61%), Gaps = 72/913 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             K  +S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y
Sbjct: 4   PTKESSSINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 64  KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK  H LL D+ K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 124 EIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++G +A+IDN  + ++ L++ I  PDFPTG+ I G  GI  AY TGRG +++R
Sbjct: 184 PHNMTEVINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYINGTDGILEAYKTGRGRVIMR 243

Query: 252 GVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
                 E  +  + QIV+TEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RV
Sbjct: 244 AKVDIHEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+LKR  S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV 
Sbjct: 304 VIDLKRDESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L K+++RAH+L GL +++AN+DE++ +I+ SP+P  A+  ++ RSWN S +K +
Sbjct: 364 RRTIFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSM 423

Query: 431 IDLID---------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++ +D          S Y I +D +  L+E Q  AIL LRL RLTGL +D I NE   L 
Sbjct: 424 LEGVDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELI 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             IK  + ILS  S L+ ++K+EL+ ++D     R++ I+   LD+  ED I  EDMVVT
Sbjct: 484 ERIKYLIGILSDVSELIRVVKEELVEIRDNYGDERKSEIIVSRLDLTREDLITEEDMVVT 543

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  GYVK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  
Sbjct: 544 LSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWS 603

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+  P+ S  ++G+ + NIL L++ ERIT +MP  E    W   YV  +TK G V++  
Sbjct: 604 KVYDFPVASRISKGRPINNILPLDKNERITALMPISEFTEGW---YVFMSTKLGRVKKVD 660

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS+F +   +GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++
Sbjct: 661 LSEFARPRSTGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSA 719

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV G+ L    +++S+ +                                         
Sbjct: 720 AGVTGMRLHDNQKIVSVIVTNPD------------------------------------- 742

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +
Sbjct: 743 ---------------EGVVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKV 785

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++++ I++++D GTL+R   +++R   R+ +GV + +   +E+++S++ +++ +
Sbjct: 786 VVAVLVDNDEDIVMITDNGTLVRTSSDQVRECGRSAQGVRLINLRNNEKLISLKVVKQED 845

Query: 902 I----VDEAESTE 910
                  E ES+E
Sbjct: 846 EEAHDDQELESSE 858



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 100/230 (43%), Gaps = 14/230 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   + LG VK+V LS +   R  GK    + + D D ++ + +   +  ++ FS  G 
Sbjct: 646 YVFMSTKLGRVKKVDLSEFARPRSTGKI--AIGLNDGDELSYVALTDGNKQIMMFSDAGK 703

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      A   A +  + L+  ++I +++         +   V+ AT++G  
Sbjct: 704 AIRFDESDVRAMGRSA---AGVTGMRLHDNQKIVSVIVTN-----PDEGVVLAATENGYG 755

Query: 658 RRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  +S++ +  R   G IA+       +++       + DI++ T  G  VR     +R
Sbjct: 756 KRTAVSEYRKTKRASQGVIAISTSERNGKVVVAVLVDNDEDIVMITDNGTLVRTSSDQVR 815

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
              GR++ GVR I+L   +++IS+ +V   D +  +        + ++  
Sbjct: 816 EC-GRSAQGVRLINLRNNEKLISLKVVKQEDEEAHDDQELESSEATEQSE 864


>gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
 gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704]
          Length = 828

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/909 (41%), Positives = 557/909 (61%), Gaps = 92/909 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E+++  V +ID+      +  ++ +++II+GPDFPTG +ILG  GI+ AY T
Sbjct: 182 NIPPHNLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +I+VTE+PY VNKA ++EKIAE+VR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G RVVIEL++  +A+V+LNQLY++T LQ  F V M+AL   +P    ++ +L  ++ 
Sbjct: 302 SREGMRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVNNEPRVMNILDMLNYYLQ 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S   + A+ ELM+R   
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQ++AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FGLSEVQSQAIVDMRLRALTGLEREKLENEYQELMKQ 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+ R  LLG+IK+E+L ++D+    RRT I     D+  ED I +ED+V+T++
Sbjct: 456 IRELKAILADRKLLLGVIKEEILIIRDKYGDERRTSIGFDEFDISMEDLIPKEDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    +++Q RGGKG  G+    ED+V +LF+  TH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSHDTFKSQNRGGKGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRMKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG A++N+L L  GE+I+ ++P  E +   +  Y+  ATK G V++  ++
Sbjct: 576 YEIPEASRTSRGTAIVNLLQLMPGEKISAVIPIEEYK---DGEYLFMATKKGLVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+    + D+LL TK GQC+RF    +R   GR S+G
Sbjct: 633 EYAHVRKTGLAAITLREEDELIEVKYTDNDRDVLLVTKYGQCIRFDEKDVRP-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++LA  D+VI M                                             
Sbjct: 692 VRGMNLADRDEVIGM--------------------------------------------- 706

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L  +   +L VSEKG GKRTS  +F   NR GKG++   +++  + G +V 
Sbjct: 707 --------QLDSQGCDLLIVSEKGMGKRTSIEEFTCQNRGGKGVKCYKITE--KTGNVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESE 901
           V  VN +D++++++ +G +IR+    I +  R T GV + +  + + V S+ ++R  + E
Sbjct: 757 VKAVNHDDEVMIINTEGIIIRMKCEGISVLGRVTSGVKLINLQEGDIVASIAKVRKGDEE 816

Query: 902 IVDEAESTE 910
            +D  E T+
Sbjct: 817 PIDSVEDTD 825


>gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
 gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium
           HdN1]
          Length = 900

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/908 (42%), Positives = 561/908 (61%), Gaps = 70/908 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  ++I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WNK 
Sbjct: 3   ELAKEILPINIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDGS Q P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D C A +D+ +I ++ LM+ I+GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDACFAFMDDSEITIEGLMKHIQGPDFPTYGIINGRAGIIEAYRTGRGRIRI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      R+ I+VTEIPYQ+NKA ++E+IAELV+EK I  I +LRDESD+   R
Sbjct: 243 RARATVERDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDK-NIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++RG +ADV+LN LY  T ++S+F +NMVAL   +P    L G+++AFV  R+EVV
Sbjct: 302 IVIEVRRGENADVVLNNLYSQTQMESVFGINMVALVDGQPRLLNLRGVIEAFVRHRQEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAH+L GLA+A+AN+D V+ +I+ S +   A   L+ + W   ++  
Sbjct: 362 TRRTVYELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIA 421

Query: 430 LIDLIDD---------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +++   +          ++    +G  YLS+VQ R ILE+RL RLTGL  + +  E    
Sbjct: 422 MLERAGEAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEK 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E L IL+SR RL+ +I+ EL ++++     R+T IV   LD+ DED I  E +VV
Sbjct: 482 LEIIRELLAILASRERLMQVIRDELTAIREGFADARKTEIVASQLDINDEDLIPEETVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GY K  PL  Y+AQ RGG+G++   +++ED +  L +VSTH ++L F+S G V+ 
Sbjct: 542 TLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKVFW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P    QA+G+ ++N+LSL + E+IT I+P    +    + +V  AT +G V++ 
Sbjct: 602 LKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLRGYD---GDRFVFMATSNGTVKKV 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +    G IA++L+  + ++ V       DI+L +  G+ VRF  + +R   GR 
Sbjct: 659 ALQEFSRPRSQGLIALELEENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAM-GRT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG++L +   VI++ +                                        
Sbjct: 718 ARGVRGMNLPEDAAVIALIVPDP------------------------------------- 740

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           +  ILT  E GFGKRT   +F    R GKG+ A   S+ N  G 
Sbjct: 741 ----------------DAQILTACENGFGKRTLVSEFPTKGRGGKGMIAIRTSERN--GK 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L+    VND ++++L+SD+GT++R+  +E+ +  R T+GV +    + ER+V +E++ E 
Sbjct: 783 LMGAVQVNDGNEVMLISDQGTMVRIRADEVSLMGRDTQGVTLIRLNEGERLVGIEQVEEV 842

Query: 901 EIVDEAES 908
                 E+
Sbjct: 843 SDAAVEEA 850



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 68/443 (15%), Positives = 148/443 (33%), Gaps = 34/443 (7%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +    T+ L+ + +++  ++  L   +A+ + ++++IR       A RE    +    
Sbjct: 464 HRLTGLETEKLIQEYQEKLEIIRELLAILASRERLMQVIRDELT---AIREGFADARKTE 520

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            +   +D I+D          + LS         L   +    G              I 
Sbjct: 521 IVASQLD-INDEDLIPEETVVVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCI- 578

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--- 542
           E L ++S+   +L       +        P+  R  +G   +        E +   +   
Sbjct: 579 EHLLVVSTHDTILCFTSAGKVFWLKVYQIPQAGRQAKGRPIVNLLSLGENEKITAILPLR 638

Query: 543 -----------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                      +  G VK+V L  +   R  G     + + + + +  + I   H  ++ 
Sbjct: 639 GYDGDRFVFMATSNGTVKKVALQEFSRPRSQG--LIALELEENNRLVGVAITEGHQDIML 696

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            SS G   +     +      ARG   +N         +              +  ++ A
Sbjct: 697 LSSEGKAVRFDENEVRAMGRTARGVRGMN---------LPEDAAVIALIVPDPDAQILTA 747

Query: 652 TKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRF 708
            ++G  +R  +S+F    R   G IA++      +++        N+++L +  G  VR 
Sbjct: 748 CENGFGKRTLVSEFPTKGRGGKGMIAIRTSERNGKLMGAVQVNDGNEVMLISDQGTMVRI 807

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               + +  GR++ GV  I L +G++++ +  V        E          +    +G+
Sbjct: 808 RADEVSLM-GRDTQGVTLIRLNEGERLVGIEQVEEVSDAAVEEAKASGAKKLRATDFNGE 866

Query: 769 TEEITSLKNDSSVEGNISEERCQ 791
           + E            N S +  +
Sbjct: 867 SVEGIDDAEQDKTGNNGSGDTDE 889


>gi|303256830|ref|ZP_07342844.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302860321|gb|EFL83398.1| DNA gyrase, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 955

 Score =  876 bits (2262), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/911 (38%), Positives = 536/911 (58%), Gaps = 67/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++      +S+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   WN +
Sbjct: 65  QQVNKAEPISLEDEMKRSYLDYAMSVIMGRALPDVRDGLKPVHRRVLFAMFELNNMWNTQ 124

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ G+V+GKYHPHG+ A Y+ + RMAQD+S+R  L++GQGNFGSVDGD  AA RY
Sbjct: 125 HKKSARVVGDVIGKYHPHGDVAAYETIVRMAQDFSMRYPLVDGQGNFGSVDGDGAAAMRY 184

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K +  +L  L +D VDF PNYDG+ +EP VL   +P +L+NG  GIAVGMATNI
Sbjct: 185 TEVRLKKLSSEMLRGLDEDAVDFAPNYDGTQKEPTVLPTVFPELLINGSAGIAVGMATNI 244

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E V+ C+ V+ NP+  +D +++++  PDFPTG ++ G + +  AY TGRG  +I
Sbjct: 245 PPHNLRETVNACLLVLRNPECTIDEIIKVMPAPDFPTGGILYGLSDVHEAYRTGRGKAII 304

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +HIE+      E I++ EIPYQVNK  +LEKIA+LV EK+I  ++ +RDESD+ G R
Sbjct: 305 RAKTHIEEWDNGNRESIIIDEIPYQVNKRLLLEKIAQLVAEKKIDGMSFVRDESDKNGMR 364

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            VIELKRGA+A+V+LN LY+ T LQ  F +N+VAL   +P++  +  IL  F++FR EVV
Sbjct: 365 GVIELKRGANANVVLNLLYKNTQLQDSFGINLVALVNGQPKQLNIKEILVEFLSFRREVV 424

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R T +  +KAR R +++ G AIA+ANLD+ + IIR S N + A   L++R W A +  +
Sbjct: 425 TRVTMFRRDKARARVYLVEGQAIALANLDDFINIIRTSANAKIAEERLLEREWPAHEAAE 484

Query: 430 LIDLI-----------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +I              +D +  +    T  LS +Q + IL++RL  LTGL ++ I  E  
Sbjct: 485 MIKRANLDKKFLRPEDEDMTLGLTDQETYRLSSMQAKNILQMRLQSLTGLEQEKIHAEYK 544

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I +  DIL+   R+  II   L +V  E    R+T+IV    +++ +D I   +M
Sbjct: 545 ELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQIVANAENVKTKDLIPLREM 604

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT++  GY+K      YRAQ+RGG+G+    M++ D +  LF+ +TH  +L F++ G +
Sbjct: 605 VVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKEGDIINQLFVATTHDVLLCFTNKGRL 664

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +   VW +P GS  ++G+ ++N+L L   E++T ++P   DE    +LY+  AT  G V+
Sbjct: 665 HWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAVLPI-SDEDYAKDLYIFMATADGTVK 723

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  + DF    R+G  A+ L   D ++       ++D++L +  G+ VRF    +R   G
Sbjct: 724 KTPIGDFKNQRRAGINAINLLEGDVLVGAAVTDGKHDVMLFSDNGKVVRFSEDEVRAM-G 782

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRG+ L +G +VISM +    +                                 
Sbjct: 783 RAATGVRGMRLDEGQKVISMLVCGDDEDVT------------------------------ 812

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LT +E G+GKR+   ++    R  KGI +   ++ N  
Sbjct: 813 ---------------------VLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERN-- 849

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V+   V +ND+IIL++  G L+R  VNEIR+  R T+GV + S  +  ++V +ER+ 
Sbjct: 850 GKVVSALLVKENDEIILLTSTGKLVRTRVNEIRVLGRNTQGVTLISMEEGTKLVGLERVT 909

Query: 899 ESEIVDEAEST 909
           E++  D A   
Sbjct: 910 ENDDGDNASDN 920



 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/445 (15%), Positives = 162/445 (36%), Gaps = 42/445 (9%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVA------NLDEVVRIIRFSPNPETARRELMQRSW 422
           +  ++   L + +  A     +   +         + V  II  S     A     +++ 
Sbjct: 526 MRLQSLTGLEQEKIHAEYKELVDTIIDLTDILAKPERVTAIIADSLETVAAEFGDERKTQ 585

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEV-QTRAILELRLARLTGLGRDDIRNELNSLG 481
               I    + +         +  + L++    ++   +        G+     ++    
Sbjct: 586 ----IVANAENVKTKDLIPLREMVVTLTDTGYIKSQASIEYRAQKRGGQGKRAAQMKE-- 639

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I   L + ++   LL    +  L   +  D P  +   +G   +   +    E +   
Sbjct: 640 GDIINQLFVATTHDVLLCFTNKGRLHWLNVWDVPEGSSSSKGRPIVNMLELTDDEKVTAV 699

Query: 542 V----------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +                +  G VK+ P+  ++ QRR G   + + + + D +    +   
Sbjct: 700 LPISDEDYAKDLYIFMATADGTVKKTPIGDFKNQRRAG--INAINLLEGDVLVGAAVTDG 757

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              V+ FS  G V +     +      A G   +  + L++G+++ +++   +D     +
Sbjct: 758 KHDVMLFSDNGKVVRFSEDEVRAMGRAATG---VRGMRLDEGQKVISMLVCGDD----ED 810

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKL 702
           + V+ AT+ G  +R+ L+++ +  R  K  + +       +++S     + ++I+L T  
Sbjct: 811 VTVLTATEFGYGKRSPLAEYTRHGRGTKGIISIQTTERNGKVVSALLVKENDEIILLTST 870

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ VR  ++ IRV  GRN+ GV  IS+ +G +++ +  V   D   +             
Sbjct: 871 GKLVRTRVNEIRVL-GRNTQGVTLISMEEGTKLVGLERVTENDDGDNASDNAAVEAEVVS 929

Query: 763 RLISGDTEEITSLKNDSSVEGNISE 787
              + + E     +     E N   
Sbjct: 930 ETEAEEAELEAKDEAILKEEENDEN 954


>gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2]
 gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2]
          Length = 870

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/889 (43%), Positives = 543/889 (61%), Gaps = 87/889 (9%)

Query: 12  EEKGITS-VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++ IT+ +SI  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK 
Sbjct: 3   NQEEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K AH +L DL K+TVDF PNYD +  EP VL  ++P +LVNG  GIAVGM TNI
Sbjct: 123 TEVRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GEVV G +A+++ PDI ++ LM  I GPDFPT   I GR GI  AY TGRG I +
Sbjct: 183 PPHNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIYGRKGIHEAYTTGRGIITV 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R    +E  +    E IVVTE+PYQVNKA ++EKIAEL+R K I   + +RDESDRQG R
Sbjct: 243 RAKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I LKR    DV++NQLY++T++ + F +  +A+   +PE FTL  +L+ F+  R  V+
Sbjct: 303 IAIGLKRDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNRPELFTLKELLEQFLNHRRSVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT +   KA DRAH+L GL  A+ NLD VV +IR S +PE A+  L+Q          
Sbjct: 363 IRRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQ---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  L+++Q +AILE+RL RLTGL RD I  E   L  ++    +
Sbjct: 413 ----------------SFELTQIQAQAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQE 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILSS   +  IIKQEL  +KDE    RRT+IVE   ++  ED I  EDMVVTV+  GY+K
Sbjct: 457 ILSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R P+++Y +Q RGGKG++ +  +DEDFV  LF+ STH + LF ++LG VY+ KV+ LP+ 
Sbjct: 517 RNPITLYASQHRGGKGKTAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              + GKA++N+L+  QGE++ T++  PE      + YVV ATK G V++  L  + +  
Sbjct: 577 GRTSLGKAIVNLLNFEQGEKLATVLTVPEFV---EDRYVVMATKLGRVKKTDLMAYSRPR 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G I +KL   DE+++      + DI L ++ G+ +RF  + +R    R S+GVRG+ +
Sbjct: 634 SGGLIGIKLADDDELIAAGITDGKTDIFLGSEGGKVIRFDENDVRT-TARGSMGVRGMRI 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G  V+ M ++ H                                              
Sbjct: 693 DPGSCVVGMEVLNHG--------------------------------------------- 707

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +LTV+E G+GKRT   ++R   R GKG+ +   S+ N  G +VA+  V D
Sbjct: 708 --------QTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERN--GKMVALLLVED 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            D+++LV+D G LIR  + +I + SR T+GV + + +  E+++   R+ 
Sbjct: 758 EDELMLVTDGGKLIRTGIQDISVISRNTQGVKLINLSPGEKLIGAARLP 806



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 65/155 (41%), Gaps = 6/155 (3%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           Y E +   + +    +    + ++       + +     E   ++L  +E  ++TV+  G
Sbjct: 454 YQEILSSDQVVRDIIKQELTELKDEYQDDRRTQIVEATGEINIEDLIAEEDMVVTVTRSG 513

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + KR     +   +R GKG  A      + +  L   F  + +   + +++ G + +  V
Sbjct: 514 YIKRNPITLYASQHRGGKGKTAMGTKDEDFVEHL---FVASTHHTFLFITNLGKVYQSKV 570

Query: 868 NEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            E+ +A R + G   V + +  + E++ +V  + E
Sbjct: 571 YELPMAGRTSLGKAIVNLLNFEQGEKLATVLTVPE 605


>gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 840

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 533/895 (59%), Gaps = 80/895 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I   ++ +EMQ SYL YA++VI+GRA+PD RDGLKPVHRRILF M ++G+  ++ Y KCA
Sbjct: 4   IIPTNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCA 63

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YDAL R+AQD+S R LLI+G GNFGSVD DPPAA RYTECRL
Sbjct: 64  RVVGDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRL 123

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
                  LL DL  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H 
Sbjct: 124 TPLTRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQ 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE+VDG  A++ NP++ +  LM  I GPDFPTG  ILG++GI+ AY TGRGSI +RGV+
Sbjct: 184 LGELVDGVTALLANPNLGIPELMRYIPGPDFPTGGTILGQSGIREAYTTGRGSITMRGVA 243

Query: 255 HIEKTS----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            IE        DRE IV+TE+PYQV KAA++EKIAELV +KRI  I+D+RDESDR G R 
Sbjct: 244 AIETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRA 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A   V+LN L++ T LQ+ F  NM+AL   +P    L   L+ F+ FR EV+ 
Sbjct: 304 VIELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGEPRLLNLKEFLQTFIDFRAEVIT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L+G+ +A+ANL+ V+ +IR + +  +AR EL+ R          
Sbjct: 364 RRTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTG+    I  E   L  +I +  D+
Sbjct: 414 ----------------FELSEAQAEAILQMQLRRLTGMEAGRIEAEHRELIAKIADLSDV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  R R+  II+ ELL+ K  L+ PRRT I +   +++D D I  ++MVV V+  GY+KR
Sbjct: 458 LERRERIDQIIRDELLTAKQRLNDPRRTIIEKAEGEIDDADLIANQEMVVLVTEQGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  +  QRR  +G+SG  MR++D V        H +VLFF++ G VY  + +++P GS
Sbjct: 518 LPVDTFDRQRRATRGKSGARMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++ +L +   E++T+I+P  E     ++ ++V  T+ G +++  L+ F  +  
Sbjct: 578 RTAKGTPVVQLLPIPIEEKVTSIVPVQEFA---SDEFLVMLTRTGFIKKTALAAFANLRA 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVGVRGIS 728
           +G IA+ L+  DE+  V     E+DIL+ ++ G  +RF      +R   GR + GV+ + 
Sbjct: 635 NGLIAIGLEEGDELRWVRRARAEDDILVGSRAGMAIRFRADEEQLRPL-GRTARGVKSME 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L KGD+++SM I+                                              E
Sbjct: 694 LRKGDELVSMDILS-----------------------------------------CEQRE 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R +       ++L V+  GFGKR    +FR  NR G G+ AT     ++   L A+  V+
Sbjct: 713 RAEANGECGPWVLVVTADGFGKRVPFSEFRAQNRGGMGVIATKF--RDQGDELAALRVVS 770

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             D++++V+ +G +IR    EI   SRA  GV +    +D+ +V V  + ES   
Sbjct: 771 CEDELMIVTARGVIIRQQSEEISQQSRAATGVRVQRLDEDDTIVGVAVVPESAED 825


>gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876]
 gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101]
 gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899]
 gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260]
 gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015]
 gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424]
 gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus MN8]
 gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus TCH60]
 gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00]
          Length = 886

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/891 (43%), Positives = 550/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli]
 gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli]
          Length = 859

 Score =  875 bits (2261), Expect = 0.0,   Method: Composition-based stats.
 Identities = 394/906 (43%), Positives = 560/906 (61%), Gaps = 64/906 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     ITS+++  E++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK
Sbjct: 3   DSAANEITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG+AAIYD + RMAQ +S+R +LI+GQGNFGSVDGD  A+ R
Sbjct: 63  PHKKSARVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATN
Sbjct: 123 YTEIRMSKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D CVA++++ ++ ++ LM  I+GPDFPT  +I G+ GI  AY TGRG + 
Sbjct: 183 IPPHNLAEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIYGKQGIIEAYHTGRGRLF 242

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R    IE     ++++I+VTE+PYQVNKA ++EKIAELV+EKRI  I  LRDESD+ G 
Sbjct: 243 VRARVQIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIE+KRG + DV+LN L+  T LQ  F +NMVAL   +P    L  ++  F+A R EV
Sbjct: 303 RVVIEVKRGENVDVLLNNLFSQTQLQVTFGINMVALVDGRPVLLNLKQLISEFLAHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAH+L GL IA+AN+D ++ +I+ + +P  A+ +L+ + W+   + 
Sbjct: 363 VTRRTIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVA 422

Query: 429 DLIDLIDDSSY----TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           +++   DD +           T  LS  Q +AIL+LRL RLTGL ++ I  E       I
Sbjct: 423 EMLTKTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTII 482

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL+   RL  +I++EL+++K+E   PRRT I+    ++ +ED I  ED+VVT+SH
Sbjct: 483 IDLLDILNQPERLCRVIQEELIAIKEEFLDPRRTEIITVDAEINEEDLIPAEDVVVTLSH 542

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVKR  L VY AQRRGG+G+S   +++EDF+  L I +TH ++L FSS+G VY  KV+
Sbjct: 543 EGYVKRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGKVYWLKVY 602

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP GS  A+G+ +IN+L+L + ERIT ++P           ++  AT  G  ++  L D
Sbjct: 603 KLPEGSRIAKGRPIINLLALGENERITAVLPIQNYS---AEHFIFMATMKGTTKKTSLID 659

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +    G IA+ L   D ++ V     + D+LL T  G+ +RF  S +R   GR + GV
Sbjct: 660 FSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCM-GRTACGV 718

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +G +VIS+ I                                            
Sbjct: 719 RGIKLQEGQRVISLIIAKPYG--------------------------------------- 739

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          ILT +  G+GK T  +D R+++R G G+ A   +  N  G +VA 
Sbjct: 740 --------------LILTATRHGYGKCTPVHDHRLTSRGGSGVIAIKTTARN--GQVVAA 783

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V  +D+++L+++K TL+R  V EIR+ASR ++GV +    + E +V +ERI E  I +
Sbjct: 784 VQVLPSDEVMLITNKATLVRTRVAEIRVASRHSQGVRLIRLNEGETLVGLERIEEDLITE 843

Query: 905 EAESTE 910
             +S +
Sbjct: 844 NPDSVD 849


>gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO]
 gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
 gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO]
 gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071]
 gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162]
          Length = 823

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
          Length = 886

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/891 (43%), Positives = 550/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+A+IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 815

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/883 (42%), Positives = 544/883 (61%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   K Y 
Sbjct: 7   EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 247 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L  +++ +E V+ RR
Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 414 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 461 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P     
Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E +    + ++   T+ G V++  L++F  I +SG
Sbjct: 581 AKGTAIVNLLAVEADERITAVIQVREFK---PDRFLFLGTRKGVVKKTPLAEFANIRKSG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+LG+ + FP   +R   GR + GVRGI+L+ G
Sbjct: 638 LRAVNLDEDDELIGVKFTDGENRIMLGTRLGKAITFPEDGVRSM-GRIARGVRGITLSDG 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I+                                                   
Sbjct: 697 DEVVAMDILKSG------------------------------------------------ 708

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V  + +
Sbjct: 709 -----SEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRGSQE 761

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++L++ +G +IR  V+EI + SR T+GV + + A+++RV S+ 
Sbjct: 762 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 804



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 9/222 (4%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              E+   +   +E+ ++  T      R P+   R    R  VGV+G+   + D V  + 
Sbjct: 491 DASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETDVVSDLL 549

Query: 740 IVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           I           +    ++                          +  I+          
Sbjct: 550 ITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQVREFKP 609

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++F+   + KG  K+T   +F  +N    G+RA ++ +      L+ V   +  ++I+L 
Sbjct: 610 DRFLFLGTRKGVVKKTPLAEF--ANIRKSGLRAVNLDE---DDELIGVKFTDGENRIMLG 664

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  G  I  P + +R   R  +GV   + +  + VV+++ ++
Sbjct: 665 TRLGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDILK 706


>gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237]
 gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237]
          Length = 844

 Score =  875 bits (2260), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/901 (41%), Positives = 556/901 (61%), Gaps = 86/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV     +
Sbjct: 3   EGEKLIPINIDDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A I+N DI++D L+  I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTIAYIENNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKASFEEVQ-GRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +KR A  +++LN LY+YT+LQS FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YIIKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  LM+R           
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + +   I +  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRTEYDEILAFIIDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL  VK +    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMEIIKEELAEVKAKYGDERRSEINFAGGDLSMEDMIPDEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 ALSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++S+   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 SSKGRAIQNLISIESDDKVKAFICTQDLKDEEYVNSHYVIMATKKGIVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   DE+L  +  T  ++I L  K G+ +RF  S  R   GRN+ GVRGI+L
Sbjct: 636 QNGINAIGIREDDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V + +                                           
Sbjct: 695 ANDDDEVIGMVSVQNLE------------------------------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + IL VSEKG+GKR+S  D+R++NR GKG++   ++  ++ G LVA+  V+
Sbjct: 712 ---------EEILVVSEKGYGKRSSIEDYRVTNRGGKGVKTISIT--DKTGGLVAIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAE 907
           D+D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ ++ + VDE E
Sbjct: 761 DSDDLMIINKSGIAIRMSVEDLRVMGRATQGVRLINIKGKDSIAAVAKVMKDEDAVDELE 820

Query: 908 S 908
            
Sbjct: 821 E 821


>gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
 gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501]
          Length = 823

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L    Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKGNQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra]
 gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra]
          Length = 861

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 547/892 (61%), Gaps = 86/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   +     +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +V+  +                                              
Sbjct: 692 TDKAVSMDVVIEDET--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I+
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 856

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 547/892 (61%), Gaps = 86/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   +     +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +V+  +                                              
Sbjct: 692 TDKAVSMDVVIEDET--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +I+
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSEDII 808


>gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3]
 gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3]
          Length = 828

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/897 (41%), Positives = 535/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K +
Sbjct: 2   QRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG+ A+YD+L R+ QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATN+ 
Sbjct: 122 EVRMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLA 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A+I+ P+I++  LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PHNLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR+G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V  +AL    P+   L  +++ +V  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVINLALVDGVPKILNLKEMMQYYVKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R          
Sbjct: 362 RRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AILE+RL RLTG+ R  I  E   +   I+E   I
Sbjct: 412 ----------------FGLSEIQAKAILEMRLQRLTGMERQKIDTEYIEVLALIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  + + II++ELL VKD     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LNSPEKQMEIIREELLKVKDVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   +++DF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I T +     E      ++V AT HG V++  L +F    R
Sbjct: 576 RAARGRSLANIMELPPGEKIRTYINIRNFE---EPGFIVMATTHGIVKKTALEEFSHPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D  DE+L       ++ I+L    G  VRFP + +R   GR ++GV+GI+L 
Sbjct: 633 TGIAAITIDEGDELLDARLTDGDHQIILAKNSGFVVRFPENEVRPM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + ++ I+M      D                                             
Sbjct: 692 EDEKCIAMVTTRRMDTA------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+         +IGALV +  VND 
Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLK--PHEKIGALVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +IL++  G + R  V++IRI  R T GV +    + + + ++ R+ +S+   + +
Sbjct: 758 DDLILITVNGIVNRQHVSDIRITGRNTSGVRLIRLMQGDSISALARVPKSDEEGDGD 814


>gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           FSC198]
 gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033]
 gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 868

 Score =  874 bits (2259), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/905 (42%), Positives = 564/905 (62%), Gaps = 70/905 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+
Sbjct: 10  SINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R++K
Sbjct: 70  VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMEK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
             H LL D+ K+TVDF PNYD +   P VL  R PN+LVNG  GIAVGMATNIP HN+ E
Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNMTE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH-I 256
           V++G +A+IDNP++ ++ L+E I  PDFPTG+ I G  GI  AY TGRG +++R  +   
Sbjct: 190 VINGTIALIDNPNLTIEELIEYILAPDFPTGSYINGTDGILEAYKTGRGRVIMRAKADIH 249

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  +  + QI+VTEIPYQVNKA ++EKIAELV++K++  I++LRDESD+ G RVVI+LKR
Sbjct: 250 EDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDGIRVVIDLKR 309

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
             S +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+ F+  R+EVV RRT + 
Sbjct: 310 DESPEVVLNTLYAQTQLQCSFGINMVALSDNRPKLLNLKEILEQFIKHRKEVVTRRTIFE 369

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           L K+++RAH+L GL +++AN+DE++++I+ SP+P  A+  ++ RSWN S +K +++ +D 
Sbjct: 370 LRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGSMVKSMLEGVDV 429

Query: 436 --------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                    S Y I  D +  L+E Q  AIL LRL RLTGL +D I NE   L   +K  
Sbjct: 430 KMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNEFKELIDRVKYL 489

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           + ILS    L+ ++K EL+ ++D     R++ I+E  LD+  ED I  EDMVVT+S  GY
Sbjct: 490 ISILSDIKELIRVVKDELVEIRDNYGDQRKSEIIESRLDLTREDLIAEEDMVVTLSMDGY 549

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK  PLS+Y AQ+RGG G+S    ++ED +  L + STH ++L FSSLG VY  KV+  P
Sbjct: 550 VKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLGRVYWSKVYDFP 609

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + S  ++G+ + NIL L + ERIT +MP  +    W   YV  ATK G V++  LS+F +
Sbjct: 610 VASRISKGRPINNILPLEKDERITAMMPISQFNEGW---YVFMATKLGRVKKVDLSEFAR 666

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               GKIA+ L+  DE+  V        I++ +  G+ +RF  S +R   GR++ GV G+
Sbjct: 667 PRSKGKIAIGLNDGDELSYVALTDGNKQIMMFSDAGKAIRFDESDVRAM-GRSAAGVTGM 725

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L    +++S+ +                                               
Sbjct: 726 RLHHNQKIVSVIVTNPD------------------------------------------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E  +L  +E G+GKRT+  ++R + R+ +G+ A   S+ N  G +V    V
Sbjct: 743 ---------EGIVLAATENGYGKRTAVSEYRKTKRASQGVIAISTSERN--GKVVVAVLV 791

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--E 905
            +++ I++++D GTL+R   +E+R   R+ +GV + +   +E+++S++ +++ ++ D  +
Sbjct: 792 ENDEDIVMITDNGTLVRTSSDEVRECGRSAQGVRLINLRNNEKLISLKVVKQDDVEDNQD 851

Query: 906 AESTE 910
            E+ E
Sbjct: 852 IENNE 856


>gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
 gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto]
          Length = 846

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   +     +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +V+  +                                              
Sbjct: 692 TDKAVSMDVVIEDET--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 898

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/906 (39%), Positives = 537/906 (59%), Gaps = 73/906 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I DEM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M Q+     + Y K AR+ 
Sbjct: 8   LNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKKSARVV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL R+AQD+++R  L++GQGNFGS+DGD PAA RYTE R+QK 
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEVRMQKL 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL K TVD+ PNYD    EP VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 128 ASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPHNLTEL 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+ID+P I +  L   ++GPDFPTG VILG  GI++AY TGRGS+ +R    IE+
Sbjct: 188 LDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGTAGIRSAYLTGRGSVKVRARCEIEE 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               RE I+VTEIPYQVNK  ++E+IA LVR+K++  I+D++D SDR G R+ I++K+  
Sbjct: 248 DKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWIQVKKDH 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A ++LN+LY+ + LQ+ F VNM+A+   +PE   L   L+ F+  R  VV RR +Y L 
Sbjct: 308 AAQIVLNKLYKMSDLQTSFGVNMIAIVNGRPEVLNLEKCLRHFIDHRRTVVTRRCRYELA 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R  ++ GL +AV ++D V+ +IR S +P+ A+ +LM            ++  +  +
Sbjct: 368 KAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAE--PLDGFAKFLERCERPA 425

Query: 439 YTIGS--DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
             I     G   L+E Q +AIL++RL RLTGL RD +  E   L   I E   IL+   +
Sbjct: 426 EEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESILTDPDK 485

Query: 497 LLGIIKQELLSVKDELDT---------------PRRTRIVEGLLDMEDEDCIVREDMVVT 541
           L+ +I++ELL+++ E                   RRT ++   L+++  D +  E MVV 
Sbjct: 486 LMAVIREELLAIRYEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVADESMVVM 545

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-DEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++   YVKR+P   YR Q RGG G      R D+D + +LF  S H  VL F++ G V++
Sbjct: 546 ITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFTNTGRVFR 605

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           ++V+  P+G+   R KAL+N L L +GE+I  ++ + E+E   ++ +VV A++ G ++R 
Sbjct: 606 KRVFEFPLGTRGQRPKALVNFLDLKEGEQILEMVAYREEE-VDDDHFVVLASRQGYIKRT 664

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS+F  I  SG IA  +   D ++  +      DI++ ++ GQ +RF  + +R   GR 
Sbjct: 665 SLSEFQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFDEADVRPM-GRT 723

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L  GD+V+++ ++   +                                   
Sbjct: 724 ARGVRGMGLRDGDEVVNILVLDRENEGEVGF----------------------------- 754

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                               LTV EKG+GKRT + ++R  +RSG G++   VS+ N  G 
Sbjct: 755 --------------------LTVCEKGYGKRTPASEYRSQSRSGLGLKTIKVSERN--GK 792

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V +  V + DQ+++V+ +G +IR PV  I    RAT+GV +     +E VV + R+ + 
Sbjct: 793 VVGMVKVREADQLMVVTSQGKIIRTPVAGISELGRATQGVRLIRLNDEEVVVGLARVDDP 852

Query: 901 EIVDEA 906
              +E 
Sbjct: 853 SDGEEP 858



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 96/264 (36%), Gaps = 11/264 (4%)

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E+ +  +  VV  S  GY+KR  LS ++  R  G       + + D + D  + +    
Sbjct: 642 REEEVDDDHFVVLASRQGYIKRTSLSEFQNIRSSG--LIAANVVEGDMLIDAKLTNGGCD 699

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  S  G   +     +      ARG   + +    +       +   + E+     ++
Sbjct: 700 IIMASREGQAIRFDEADVRPMGRTARGVRGMGL----RDGDEVVNILVLDRENEGEVGFL 755

Query: 649 VFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
               K G  +R   S++   +RSG     +K+     +++ +    + + +++ T  G+ 
Sbjct: 756 TVCEK-GYGKRTPASEYRSQSRSGLGLKTIKVSERNGKVVGMVKVREADQLMVVTSQGKI 814

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R P++ I    GR + GVR I L   + V+ +A V       +        ++      
Sbjct: 815 IRTPVAGISEL-GRATQGVRLIRLNDEEVVVGLARVDDPSDGEEPTEGEAAALAEGEAAP 873

Query: 766 SGDTEEITSLKNDSSVEGNISEER 789
           +   +         S      E  
Sbjct: 874 AEAADGPAEDAEAESGADADGEGE 897


>gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
 gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473]
          Length = 889

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/906 (42%), Positives = 543/906 (59%), Gaps = 71/906 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ DI ++ LME I GPDFPTGA+I GR GI  AY TGRG + +R  +
Sbjct: 187 LSEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAIINGRRGIDEAYRTGRGKVYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL+++K++ +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPERLMEVIREELVAIKEQYNDARRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P                              
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILP------------------------------ 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGV 724
                                V    +   + + T  G   +  ++   R      S G+
Sbjct: 637 ---------------------VREYEEGRHVFMATASGTVKKTALTEFSRPR----SAGI 671

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             ++L +GD++I    V   D   +  +        +       +   T+          
Sbjct: 672 IAVNLNEGDELIG---VDLTDGSNEVMLFSTDGKVVRFPEGQVRSMGRTATGVRGINLNG 728

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   +  ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 729 DDRVISLIIPRGDGEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E E  D
Sbjct: 787 VQVAPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEHVVGLQRVAEPE-DD 845

Query: 905 EAESTE 910
           E E  E
Sbjct: 846 EFEGEE 851



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 97/256 (37%), Gaps = 15/256 (5%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G V
Sbjct: 646 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSTDGKV 703

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +    ++      A G   +  ++LN  +R+ +++          +  ++  T++G  +
Sbjct: 704 VRFPEGQVRSMGRTATG---VRGINLNGDDRVISLI------IPRGDGEILTVTENGYGK 754

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  + ++   +R+ +  + +       +++        + I++ T  G  VR  +S +  
Sbjct: 755 RTAVEEYPTKSRATQGVISIKVSERNGKVVGAVQVAPTDQIMMITDAGTLVRTRVSEV-S 813

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV  I  A+ + V+ +  V   + D  E         +        +E    +
Sbjct: 814 VVGRNTQGVTLIRTAEDEHVVGLQRVAEPEDDEFEGEELDAEEGSAENTAQSASENTNDI 873

Query: 776 KNDSSVEGNISEERCQ 791
             + + +    E+   
Sbjct: 874 ATEENGDDEAPEDDNA 889


>gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 824

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/899 (42%), Positives = 544/899 (60%), Gaps = 85/899 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  I   + E   +  V I DEM+ SY+ Y+++VI+GRA+PD RDGLKPVHRRIL  M +
Sbjct: 11  DEKIEQHDGEGGRVVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNE 70

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  +K Y K AR+ G+V+GK+HPHG+ A+YD+L RM QD+SLR  LI+GQGNFGSVDG
Sbjct: 71  AGITHDKAYKKSARVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDG 130

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K    +L+D+ K TVDF+PNYDGS +EP VL ++ PN+L+NG  GI
Sbjct: 131 DSAAAMRYTEVRMDKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGI 190

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEVVD  V +ID+P+ +L  L +I++GPDFPTG +I+G +GIK+AY 
Sbjct: 191 AVGMATNMAPHNLGEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGTSGIKSAYE 250

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGR  I +R V+ IE+   D+ +IVV E+PYQVNKA ++E IA LVR+K+I  I+DLRDE
Sbjct: 251 TGRSPIYLRAVTEIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDE 310

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R+G RVVIELK+ A+  V+LNQLY+ T L++ F +  +AL    P    L  +++ ++
Sbjct: 311 SGREGMRVVIELKKAANPKVLLNQLYKQTQLETTFGIINLALVDGVPRVLNLRELIQIYL 370

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+ RRT + L KA +RAH+L GL +A+ N+DEV+++IR S   E AR  L+    
Sbjct: 371 KHRIDVISRRTVFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLIS--- 427

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L E+Q +AIL+++L RLTGL R  I  E N L  
Sbjct: 428 -----------------------NFDLDEIQAKAILDMKLQRLTGLERQKIDEEYNGLID 464

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL++  R   II+ E+L +KD+    RRT I     ++ DED I  E++VVT 
Sbjct: 465 TIADLKDILANDERKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVVVTS 524

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+K +PL  Y  Q RGG+G  G+  +++D V  +F+ STH  +LFF++ G VY +K
Sbjct: 525 TQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVGSIFVASTHDYILFFTNRGKVYWQK 584

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P GS Q+RGKA++N+L L +GE +  ++P  + E   N+ Y+   T+ G V+R  L
Sbjct: 585 VYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHDFE---NDRYLFMGTRDGTVKRCSL 641

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF    ++G IA+ L   DE+++V       DI+L ++ G+ +R     +RV  GR + 
Sbjct: 642 SDFSNPRKAGIIAISLKEGDELVNVLQTDGNQDIMLASRHGKALRISEEDVRVM-GRTAR 700

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ LA  D ++S+ +V                                         
Sbjct: 701 GVRGMKLAGPDVIVSLDVVDSDGT------------------------------------ 724

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +LTV+E GFGKRT   ++R   R G+G+        N  G +V
Sbjct: 725 -----------------LLTVTENGFGKRTPFDEYRTLRRGGQGVITIFTDMRN--GPVV 765

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            V  V D+D+IIL S  G ++R+PV +IR+  R TKGV I +  + +++VS+ RI++ E
Sbjct: 766 TVKTVEDDDEIILTSSAGIVMRIPVTDIRVQGRNTKGVKIMNIREKDKLVSLARIKKEE 824



 Score = 84.8 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++   AD  + +   +   A  R    + ++    +  + ++ +  E   ++L  +E+ +
Sbjct: 462 LIDTIADLKDILANDERKYAIIRDEVLELKDKYGDERRTLIQSSREELADEDLIPEEEVV 521

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T ++ G+ K      + + +R G+G+R  +  + + +G   ++F  + +D I+  +++G
Sbjct: 522 VTSTQSGYIKNIPLQTYNMQHRGGRGVRGMETKEDDTVG---SIFVASTHDYILFFTNRG 578

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            +    V +I   SR ++G   V +   A+ E V ++  + + E  
Sbjct: 579 KVYWQKVYDIPRGSRQSRGKAIVNLLELAEGESVNAMIPVHDFEND 624


>gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211]
          Length = 859

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 413/900 (45%), Positives = 606/900 (67%), Gaps = 43/900 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D      I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MQKTEIPKDN----NIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+
Sbjct: 57  YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K + +L+DD+ K+T+ F+ NYD + +EP VL A+YPN+LVNG G
Sbjct: 117 DGDPAAAMRYTETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGE+++G +A+IDN DI +  LM+ + GPDFPTG VI+G+  IK+ 
Sbjct: 177 GIAVGMATSIPPHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVIIGKDIIKHG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IRG   +E     RE++V+T IPYQVNK+ + E+IA+LVREK+I  I D+R
Sbjct: 237 YNNGRGSFKIRGEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RV I+L+ G   + I  QLY+ T ++S F  N +A+   KP+  TL   L  
Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRQLYKNTQIESSFGFNTLAIVQGKPKTCTLKDFLSN 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F++FRE++V+++TK+ L KA +RAH+L+GL+++V NLD++++IIR S  PE A++ +++ 
Sbjct: 357 FLSFREDIVIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKT 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  +  + LI L++         G   LSE Q  AILELRL +LT LG ++I  E+  L
Sbjct: 417 KWKINKSQKLISLVE----GKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     I+SS+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I ++ +++
Sbjct: 473 AELIARYKKIISSKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVII 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  L   + Q+RGGKG+SG+  RD+D V     V+THTSVLFFS+ G VYK
Sbjct: 533 TVTLQGYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYK 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K W++P GS  ++GK+L NIL L   + I++IMP PE+E+   N  ++FAT  G VR+N
Sbjct: 593 VKAWKIPEGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKN 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF  IN SGKIAMKLD+ D+I+ V+ C  + DI+L+TK G+C+RF    +RVF GR+
Sbjct: 653 SLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIRFEAKKLRVFKGRS 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G++GI LA  DQ++S++++ +                                 + + 
Sbjct: 713 SKGIKGIELAPNDQIVSLSVIDN---------------------------------DKTK 739

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G  S++   E+K KE+F+L++SE G+GK+TS  D+R++NR GKGI     S  N  G 
Sbjct: 740 KNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRN--GN 797

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + + FPV + D+I++ ++KG +IRV V EIR A R T+GV I   + +E+VVS  +I ++
Sbjct: 798 ITSSFPVFEGDEILISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKIDDN 857



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 98/326 (30%), Gaps = 83/326 (25%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC------TQENDILLTTKLGQCVRFPI 710
           +++ K     +      I + L    E L           T E+      K    +    
Sbjct: 366 IKKTKFD-LQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQ 424

Query: 711 SAIRVFAGRNSVG--------VRGI---SLAK------GDQVISMAIVLHADADYDERIC 753
             I +  G+   G        V  I    L K       +  + +  +    A Y + I 
Sbjct: 425 KLISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIIS 484

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             K +         + +E  ++   + +   +     +E   K+  I+TV+ +G+ KR S
Sbjct: 485 SKKELLKVISEELKNIKEKFAVPRRTKIIDAVLNYDIEETIQKQSVIITVTLQGYIKRGS 544

Query: 814 SYDFRISNRSGKG-----------------------------------IRATDVSKI--- 835
               +   R GKG                                   ++A  + +    
Sbjct: 545 LDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEGSSS 604

Query: 836 ------------NEIGALVAVFPVNDND------QIILVSDKGTLIRVPVNEIRIASRAT 877
                           ++ ++ P+ +N+      QII  + +G + +  + +        
Sbjct: 605 SKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSI--NA 662

Query: 878 KGVVIFSTAKDERVVSVERIRESEIV 903
            G +      ++++V V +I + +  
Sbjct: 663 SGKIAMKLDNNDKIVGV-KICQDDQD 687


>gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
 gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733]
          Length = 823

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/904 (40%), Positives = 549/904 (60%), Gaps = 87/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +    +    E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAVEQTVEE 818

Query: 907 ESTE 910
           ++TE
Sbjct: 819 QATE 822


>gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21]
 gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21]
          Length = 838

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/918 (39%), Positives = 531/918 (57%), Gaps = 90/918 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +            +  V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MDDQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  NK Y K ARI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+
Sbjct: 61  NEAGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ K A  +L D+ KDTVDF PNYD S +EP VL ++ P +L+NG  
Sbjct: 121 DGDPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSA 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVD  V +ID+PD  ++ LM  I+GPDFPTGA ILG +GI+ A
Sbjct: 181 GIAVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQILGVSGIRQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +H+E    ++ +IVVTEIPYQVNKA ++E IA LV++K +  I DLR
Sbjct: 241 YTTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIEL+     +++LN+LY++T +Q  F +  +AL    P    L  IL  
Sbjct: 301 DESDRKGMRIVIELRSDIIPEIMLNKLYKHTQMQESFGIIQLALVKGHPRILNLKEILVY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++EV+ R+T+Y LNKA++RAH+L GL IA+ +LDEV+  IR S   E AR  L+ +
Sbjct: 361 YLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLISK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q +AIL++RL RLTGL R  I +E   +
Sbjct: 421 --------------------------FGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEV 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     +L+   +++GI K + L VK     PRRT IV    +++ ED I  ED+V+
Sbjct: 455 MATIAYLESVLADEHKIMGIAKDDFLDVKKRFGDPRRTSIVPDAGEIDAEDLIAEEDIVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR--------DEDFVTDLFIVSTHTSVLFF 592
           T+SH  Y+KR  L+ +R Q RGG+G      +          DF   L + STH ++LFF
Sbjct: 515 TISHQSYIKRQALTNFRNQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY++K + +P    QA+G  + N+L L + E+IT I+      S   N ++  AT
Sbjct: 575 TNQGRVYRQKGYEIPEAGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMAT 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G +++  +S+F    R+G IA+ LD  ++++ V+  +  +DILL T+ G  +RF  S 
Sbjct: 635 NKGVIKKTSVSEFKTARRAGLIAINLDDDEDLIDVKLTSGHHDILLATRDGYAIRFNESD 694

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI+L   D ++SM                                  
Sbjct: 695 VRPM-GRTAHGVRGITLRHHDVLVSMD--------------------------------- 720

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                +     +LTV+E G GKRT   ++R+  R GKGI    V
Sbjct: 721 -------------------SCEGDSGEVLTVTEGGLGKRTDISEYRLQTRGGKGIINLKV 761

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  N+ G +V    VND+  I+L+S  G +IR+  ++I   SR  +GV +    K ++V 
Sbjct: 762 T--NKTGDIVGSKLVNDHHDILLISAAGIIIRMKASDISSYSRNAQGVKMMDLEKGDKVA 819

Query: 893 SVERIRE-SEIVDEAEST 909
           ++  +   S+   E E+ 
Sbjct: 820 ALAIVDTVSDEEKETENA 837


>gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170]
 gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170]
          Length = 844

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/898 (42%), Positives = 554/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ KDTVD + N+D S QEP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA IDN DI++D L+  I+ PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIYGYDGVKEAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE I+VTEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR+G RVV
Sbjct: 243 AKAVIEEVQ-GRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YT+LQS FSVN +AL   +P+   +  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGRPQMLNVKEMIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA DRAH+L GL IA  N+DEV+ IIR S N + AR  LM+R           
Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R+E   +   I +  DIL
Sbjct: 411 ---------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK ELL VKD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DRKERRMQIIKDELLEVKDKYGDERRSEINFAGGDLSIEDMIPNEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLSEYKTQNRGGVGQKASSTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +++   +   +  DE   NN +V+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDKVKAFICTQDLKDEDYVNNHFVIMATKKGTVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   DE+L  +  T  ++I L  K G+ +RF  S  R   GRN+ GVRGI L
Sbjct: 636 QNGINAIGIRENDELLEAKLTTGTSEIFLGLKSGKAIRFEESKTRPM-GRNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V + + +                                         
Sbjct: 695 ADDNDEVIGMVSVNNFEDN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSE G+GKR++  D+R++NR GKG++   +++  + G LV++  V+
Sbjct: 714 -----------ILVVSENGYGKRSNIDDYRVTNRGGKGVKTISITE--KTGGLVSIKNVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ + +   E 
Sbjct: 761 DADDLMIINKSGIAIRMSVEDLRVMGRATQGVKLINIKGADSIAAVAKVMKDDDAVEE 818


>gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68]
 gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68]
          Length = 823

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 879

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/904 (42%), Positives = 564/904 (62%), Gaps = 86/904 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  +   +I  EM++S+L YA++VI+ RA+PD+RDG+KPVHRRIL+GM   G+  +K 
Sbjct: 4   DHDSKLKEQNIVKEMKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R +L++GQGNFGS+DGD  AA RY
Sbjct: 64  YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  L+ D+ KDT+DF  NYDG+ +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 124 TEARMSKIAMELMRDINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G + +  NPDI +  LME+I+GPDFPT  +ILGR+GI+ AY TGRGS+++
Sbjct: 184 PPHNLTEVINGVLELSKNPDISIPELMELIQGPDFPTAGLILGRSGIRRAYETGRGSVIM 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R  + IE     +E I+++EIPYQVNKA ++EKIAEL R+K++  I DLRDE+  ++G R
Sbjct: 244 RAKTLIETRPNGKETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R A+A+VILN LY+ T LQ+ F VNM+AL   KP+   +   +  ++  ++ VV
Sbjct: 304 IVIDVRRDANANVILNNLYKQTPLQTSFGVNMLALVDGKPQVLNIKQAIYHYLEHQKTVV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA DRAH+L GL IA+ ++DE++ +IR S N   A + L ++         
Sbjct: 364 RRRTAYNLKKAEDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQ--------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL RD I +E   L   I E   
Sbjct: 415 -----------------FKLSERQAQAILDMRLRRLTGLERDKIESEYQELLKYIDELRA 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   +LL II++EL+ ++D+    RRT IV G   D+EDED I  E++V+T+S   Y+
Sbjct: 458 ILADEEKLLQIIREELIEIRDKYGDERRTEIVAGGLEDLEDEDLIDEENIVITLSSNNYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S YRAQ RGG+G  G+   DEDFV+ +   STH +VLFF++ G VYK K + +P 
Sbjct: 518 KRLPASTYRAQHRGGRGIQGMNTLDEDFVSQMVTTSTHDNVLFFTNKGRVYKVKGYEIPE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  ++N++ L++ E I+T++     E    + Y+VFATKHG ++R+ LS F +I
Sbjct: 578 LSRQSKGIPIVNVIDLDKDESISTMIAVKNLE--REDAYIVFATKHGLIKRSNLSHFSRI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N++GKIA+     DE+++V        +++ TK    +RF  + +R   GR + GV+GIS
Sbjct: 636 NKNGKIAINFREEDELIAVRLTDGNKQLIIGTKHASLIRFEENKLRPL-GRTAAGVKGIS 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI + ++   D                                           
Sbjct: 695 LREGDEVIGLDVIESND------------------------------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L V+E G+GKRT   ++RISNR GKGI+   +++ N  G LV +  VN
Sbjct: 712 --------EHEVLVVTENGYGKRTKESEYRISNRGGKGIKTATITEKN--GNLVCITTVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI--VDEA 906
            N+ I++V+D G +IR+ V E     R+ +GV +    + + V +V ++ + E    ++ 
Sbjct: 762 GNEDIMIVTDHGVIIRLDVAEFSQNGRSAQGVRLIRLDEGQFVATVAKVEKEEEVMDEDK 821

Query: 907 ESTE 910
           E  E
Sbjct: 822 EPGE 825


>gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065]
          Length = 831

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/890 (39%), Positives = 545/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + ++VT++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N++ +   E+I T++   +     +  + V  T++G +++ ++S +  I + 
Sbjct: 576 TAKGTNIVNLIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEISKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     ++I++ T+ G C+RF    +R   GR + GV+ I+L K
Sbjct: 633 GLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFNEEDVRPM-GRVATGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +V+  +                                              
Sbjct: 692 ADKAVSMDVVIEDET--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    V ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFVKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus]
          Length = 903

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/890 (42%), Positives = 559/890 (62%), Gaps = 84/890 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  LI+GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G +++  NPDI +  LME ++GPDFPT  +ILG++GI+ A+ TGRGSI 
Sbjct: 183 IPPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIILGKSGIRRAFETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTE+PYQVNKA M+EKIAEL R+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A V+LN LY+ T LQ+ F VNM+AL   +P+  +L   L+ ++  ++ V
Sbjct: 303 RVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKEALEEYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA DRAH+L GL IA+ ++DE++R+IR S   + A   L ++        
Sbjct: 363 VRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQ-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I +E   L   I+E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIESEYIELIAYIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
           +IL+   +LL I++ EL+ +++     RR+ I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 EILADEEKLLQIVRNELIDIRERYGDERRSEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+  E I+T++   + E    + Y+VFAT+ G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVVNAIELDNDESISTMIAVKDLE--SEDDYLVFATRKGRVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+   + DE+++V     E DIL+ T     +RF  + +R   GR + GV+GI
Sbjct: 635 INKNGKIAISFKNDDELIAVRLTDGEQDILIGTSHASLIRFNETTLRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+VI + +                                               
Sbjct: 694 TLREDDKVIGLDVTN--------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++ IL V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 709 ------AESDEEILVVTENGYGKRTPVGDYRLSNRGGKGIKTATITERN--GNIVCITSV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + +++V++ G +IR+ V +I    RA +GV +    +++ V +V ++
Sbjct: 761 TGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810


>gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
 gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106]
          Length = 884

 Score =  874 bits (2258), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 543/896 (60%), Gaps = 55/896 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I    + +EMQ SYL YA++VI+GRA+PD RDG KPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SEERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+R  LI G GNFGS+D DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMRYT 123

Query: 132 ECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL+   +  +L D+  +TV+F  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA+I NP+I    LM+ I GPDFPTGA ILGR+GI+ AY TG+GSI +
Sbjct: 184 PPHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKILGRSGIREAYTTGQGSITM 243

Query: 251 RGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE         RE I++T++PYQ NKAA++EKIAE+V +KRI  I+D+RDESDRQ
Sbjct: 244 RGVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRQ 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A   V+LN LY+ T LQS F  NM+AL   +PER TL   LK F+ FR 
Sbjct: 304 GMRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSRPERLTLSRYLKVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA++R H+L GL IA+ NLD ++ +IR + +  TA++EL++R      
Sbjct: 364 ETIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIER------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ  AIL+++L RLT L    I+ E   L   I +
Sbjct: 418 --------------------FELSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II+ E + +K+   +PRRT I     ++ED D I  E  ++ V+  G
Sbjct: 458 LQDILARRERILDIIESEAIELKERHGSPRRTEIEHTEGELEDTDLIANEKAIILVTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G+SG  M+++D +        H S+LFFS  G VY  K +++
Sbjct: 518 YIKRMPVNTFDAQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARG  ++ +L + + ERIT+++P  E     ++ Y+V  TK G +++ +LS F 
Sbjct: 578 PVASRTARGVPIVQMLPIPKQERITSVVPVSEFS---DDEYLVMLTKGGYIKKTELSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   DE+  V     ++ I++ ++LG  + F      +R   GR + GV
Sbjct: 635 NIRANGLIAISLGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L K D++ISM I+  A      ++                  E      +      
Sbjct: 694 KSMKLGKKDELISMDILPSAIVSSIAQL------------------ESEETDIEDEEVLE 735

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
              E       +E  I+ ++  G+GKR     FR+ NR+GKGI AT   +      +V +
Sbjct: 736 TETEETTVENNQELAIMVITAGGYGKRVPVSQFRLQNRAGKGIIATKFKQHLTTDEVVGL 795

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             VN++++++L++ +G +IR  VN I   SR+  GV +     ++ + +V  +  S
Sbjct: 796 QVVNEDNELMLITSRGIIIRQAVNAIPTQSRSATGVRVQRLDDEDAIAAVAIVPPS 851


>gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 861

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/907 (44%), Positives = 575/907 (63%), Gaps = 69/907 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+EH  +     +  +  V+I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSEHTENPTH-FKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL K+TVDF  NYDGS  EP+VL  R PN+L NG  
Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV++ C+  IDN DI +D L+EI+ GPDFPT  +I G +GI+ A
Sbjct: 180 GIAVGMATNIPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGIINGASGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R V HIE    D++ IVVTE+PYQVNKA ++ KIA+LV++KRI  I  LR
Sbjct: 240 YETGKGKIYLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+VIEL+RG   +V+LN LY+ T +Q++F +NMVA++   P+  TL  IL+A
Sbjct: 300 DESDKDGMRMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKGMPKLMTLKNILEA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R +VV RR+ + LNKAR+ AH+L GLA+A+ N+D+++ +I+ + N   A+  L+ +
Sbjct: 360 FIAHRRDVVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAK 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRD 471
           +W  S IK+LI   D   +             DG   LS+ Q +AIL+L+L RLTGL ++
Sbjct: 420 TWQGSVIKELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKN 479

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E N L   IK  LDIL +  RL+ +I++EL+ ++      R T+I+E  +D+  ED
Sbjct: 480 KIFDEFNELLERIKYLLDILQTPERLMQVIREELIDIQSNYANARMTQILEHKIDLTLED 539

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E  VVT+SH GYVK   LS Y+AQRRGGKG+    ++DEDFV  LFI ++H +VL 
Sbjct: 540 LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVLC 599

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSSLG VY  KV+ LP+ S  ARGK ++N+L L + E I  I+   + +    N +V   
Sbjct: 600 FSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFD---ENHFVFMV 656

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G  ++  L++F +  + G IA++L   D+++ VE  + E+DI+L +  G+ +RF  S
Sbjct: 657 TSSGTCKKTVLTNFSKPRKGGIIAIELKDNDQLIGVEITSGEHDIMLFSANGKSIRFKES 716

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +RV  GR ++GVRGI LA  D+V+S+ +V                              
Sbjct: 717 DVRVV-GRTAIGVRGIKLANADKVVSLIVVN----------------------------- 746

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                   ++  ILT +EKGFGKRT   ++R   R G G+ +  
Sbjct: 747 ------------------------QDNPILTTTEKGFGKRTRLNEYRSQARGGLGVISIK 782

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S  N  G +V    + D D+++L+S+KGTL+R    ++ I  R T+GV + +  K E++
Sbjct: 783 TSDRN--GKVVGAIQITDEDEMMLISNKGTLVRARAVDVSIIGRNTQGVTLINIIKGEKL 840

Query: 892 VSVERIR 898
           VS+ +I 
Sbjct: 841 VSIAKIA 847


>gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026]
          Length = 836

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/897 (41%), Positives = 551/897 (61%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+++P+     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ TSLQ+ FS NM+A+    P+  TL  I+  +++ ++EV+ R
Sbjct: 302 IEVKRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FQLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  II QE+  +K +   PRRT ++   +L +EDED I  ED+++T+S+ GY+KR
Sbjct: 456 AKPDRISAIIIQEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEVEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+   +++   +N +  F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEEETIQTIINARKEDI--DNKFFFFTTRQGLVKRTNASEFGNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ TK G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKDGDELINVLLTDGSEDIIIGTKSGYSVRFEEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD VI  + +  +                                              
Sbjct: 693 DGDLVIGASRISDS---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V  +
Sbjct: 707 -------QEVLVITEKGYGKRTRATEYPTKGRGGKGIKTANITAKN--GQLAGLVTVTGH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + I+++++KG +IR  + ++    R+T GV +    +D ++V+   +      D AE
Sbjct: 758 EDIMIITNKGVIIRTSIADVSQTGRSTMGVKVMRLDQDSKIVTFALVDPEAEKDFAE 814


>gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397]
 gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall]
 gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397]
 gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall]
          Length = 841

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   +     +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    + ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502]
 gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
          Length = 836

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/890 (39%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  V ++ EM+  Y+ YA++VI GRA+PD+RDGLKPVHRRI++ M  +G+   K Y
Sbjct: 3   NEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K +  L+ D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG + +I+N D+++  LM  I+GPDFPT  +I+G  GI+ AY TGRG ++IR
Sbjct: 183 PHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTRGIREAYETGRGKVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    + +I+VTEIPYQVNKA ++E +A LV++K+I  I+DLRDESDR G R+V
Sbjct: 243 AKAEIEEEK-GKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +++LNQLY++T LQ  F + M+AL   +P+   L  IL  +V F++EV+ R
Sbjct: 302 IELKRDANPNIVLNQLYKHTKLQDTFGIIMLALVNNQPQILNLKEILVNYVEFQKEVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL IA+ ++DEV+++IR S N   A+  LM             
Sbjct: 362 RTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+++L RLTGL R+ I  E   L  +I    +IL
Sbjct: 409 -------------NNFNLSEKQAQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                +L IIK+EL+ +K++    R+T IV+G  D++ ED I  + +++T++H GY+KR+
Sbjct: 456 DKEELVLSIIKEELIEIKNKYGDERKTEIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y +Q+RGGKG      + +DF+ ++F+ STH+++LFF++ G VYK K + +P    
Sbjct: 516 DMDTYSSQKRGGKGIQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++NI+ +   E+I T++   +     +  + V  T++G +++ ++  +  I + 
Sbjct: 576 TAKGTNIVNIIPIENNEKIQTVIGLKD---IDDMKHFVMCTRNGIIKKTEIKKYSSIRKG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+     N+I++ T+ G C+RF    +R   GR + GV+GI+L +
Sbjct: 633 GLNAINLREDDELIDVKMTKGNNEIIIVTQNGYCIRFNEEDVRPM-GRVATGVKGITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+ +SM +VL  +A                                             
Sbjct: 692 DDKAVSMEVVLEDEA--------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L++SE GFGKRT   ++ I  R GKG+    ++  ++ G +V    + ++D
Sbjct: 707 --------LLSISENGFGKRTDIEEYPIHRRGGKGVITYKIT--DKTGPIVGARFIKEDD 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++LV+     IR+ V+EI   SR   GV +  T+++E++V++ +I+  +
Sbjct: 757 ELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEEKIVAIAKIKSED 806


>gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062]
          Length = 849

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/900 (45%), Positives = 595/900 (66%), Gaps = 53/900 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D    K I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MKDTEIPKD----KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+
Sbjct: 57  YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG G
Sbjct: 117 DGDPAAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGE++DG +A+I+N DI +  LM+ I GPDFPTG VI+G+  IK  
Sbjct: 177 GIAVGMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IRG   +E     RE++V+T +PYQVNK+ + E+IA+LVREK+I  I D+R
Sbjct: 237 YNVGRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RV I+L+ G   + I   LY+ TS++S F  N +A+   KP+   L   L  
Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICNLKEFLTN 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+VV+++TK+ L KA DRAH+L+GL+++V NLD++++IIR S  P+ A++ L+  
Sbjct: 357 FLTFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNT 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  +    LI L++D            LS+ Q  AILELRL +LT LG ++I  E+  L
Sbjct: 417 KWKINKSLKLISLVEDKKEK----NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK    I++S+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I +E +++
Sbjct: 473 ADLIKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVII 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  LS  + Q+RGGKG+SG+  RDED V     V+THTSVLFFS+ G VYK
Sbjct: 533 TVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYK 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K W++P GS  ++GK+L NIL L   + I++IMPFP++ES   NL +VFAT  G VR+N
Sbjct: 593 IKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKN 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF  IN +GKIA+KLD  D+I+ VE C  + D++L+TK G+C+RF    +R+F GR+
Sbjct: 653 SLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRS 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G++GI L+  D+++S++I        D                               
Sbjct: 713 SKGIKGIELSPNDEIVSLSITNKEKIKKDT------------------------------ 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                        K   +F+L+++E G+GK+T + ++R++NR GKGI     S  N  G+
Sbjct: 743 -------------KSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GS 787

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + + FPV + D +++ ++KG +IRV V EIR A R T+GV I   + DE+VVS  +I ++
Sbjct: 788 ICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDDN 847



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 19/259 (7%)

Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +     F    R+  I A+     +E +      +E+ I+  T  G   R  +S+++   
Sbjct: 498 KTIKEKFAVPRRTKIIDAILNYDIEETIQ-----KESVIITVTLQGYIKRGALSSVKQQK 552

Query: 718 GRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            R   G  GI+    D V+ ++++  H    +      +  + A +      T +  SL 
Sbjct: 553 -RGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLF 611

Query: 777 N-----DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           N     +     +I     +E   K   I+  + KG  ++ S  DF   N +GK   A  
Sbjct: 612 NILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIK 669

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890
           +   +    +V V    D+  ++L +  G  IR    ++RI   R++KG+     + ++ 
Sbjct: 670 L---DPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDE 726

Query: 891 VVSVERIRESEIVDEAEST 909
           +VS+    + +I  + +S 
Sbjct: 727 IVSLSITNKEKIKKDTKSD 745


>gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980]
 gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15]
 gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039]
 gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980]
          Length = 823

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/904 (40%), Positives = 549/904 (60%), Gaps = 87/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDVRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906
            N+ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +    +    E 
Sbjct: 759 GNEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAVEQTVEE 818

Query: 907 ESTE 910
           ++TE
Sbjct: 819 QATE 822


>gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 850

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 552/907 (60%), Gaps = 84/907 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +  +   +    IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++
Sbjct: 8   NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 68  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGD 127

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K A  +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG  GIA
Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNL EV+     ++DNPD     LME++ GPDFPTG V++G++GI+ AY T
Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYET 247

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI++R    IE  +  +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DES
Sbjct: 248 GRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDES 307

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+    P   +L  IL+ ++ 
Sbjct: 308 DREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+ RRTKY L KA+ RAH+L GL IA+ ++DE+++IIR S   E A+ +L+     
Sbjct: 368 HQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---- 423

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q +AIL++RL RLTGL R+ I  E N L  +
Sbjct: 424 ----------------------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKD 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-V 542
           I++   ILSSR R+  II +ELL ++ +    RRT ++ G +   +++ ++ E+ V+  +
Sbjct: 462 IEDFKAILSSRDRVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSL 521

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR+P + ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF+  G VY+ K
Sbjct: 522 THNGYIKRLPTTEFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMK 581

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     A+G  ++N+L++N GE+I  ++   + ++      ++F T +G V+R  +
Sbjct: 582 GYEIPEYGRSAKGIPIVNLLNINSGEKIEAVINVSDRKNDVQ-KDLLFVTLYGTVKRTPV 640

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF  I  +G IA+ L   D++++     Q  ++++ T LG  + F  S +R   GR++ 
Sbjct: 641 SDFANIRSNGLIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSAT 699

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L + D V+   ++                                         
Sbjct: 700 GVRGIRLRENDYVVGADVL----------------------------------------- 718

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +  +  +SEKGFGKRT + D+ I  R GKG++  ++++ N  G L 
Sbjct: 719 ------------NPDSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLS 764

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  V+ N+ I+L++DKG +IR  + ++    R+T GV +    +D +V ++ ++ + E 
Sbjct: 765 GLTTVSGNEDIMLITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQED 824

Query: 903 VDEAEST 909
              ++++
Sbjct: 825 EASSDAS 831



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  G VKR P+S +   R  G     + +++ D + +  I+  + +V+  + LG+    
Sbjct: 629 VTLYGTVKRTPVSDFANIRSNG--LIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSF 686

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +      A G   I         R+         +    +  V   ++ G  +R  
Sbjct: 687 NASDVRSMGRSATGVRGI---------RLRENDYVVGADVLNPDSEVFIISEKGFGKRTP 737

Query: 662 LSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +D+    +  +  K A   +    +  + T +   DI+L T  G  +RF I  +    G
Sbjct: 738 AADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFGIEDV-SQTG 796

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           R+++GV  I + +  +V +MA V   + +          MS+          
Sbjct: 797 RSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSNGDTSEDSDS 848


>gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 869

 Score =  874 bits (2257), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/906 (40%), Positives = 535/906 (59%), Gaps = 49/906 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SQERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ      LL D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG VA+I N +I    LM+ + GPDFPTGA ILG + IK AY TGRGS+ +
Sbjct: 184 PPHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSVTM 243

Query: 251 RGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        +RE I++TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR 
Sbjct: 244 RGVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T LQS F  NM+AL   +P+  TL   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGEPQLLTLKNFLSVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             + RRT Y L KA +R H+L GL IA+++LD ++  IR + +  +A+ EL+        
Sbjct: 364 ATINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELIT------- 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ  AIL+++L RLT L  D IR E   L ++I +
Sbjct: 417 -------------------NYGLSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL  R R+L II+ E+  +K +  TPRRT I     D++D D I  E +++ ++  G
Sbjct: 458 LQDILDRRERVLEIIETEVTQIKTQFATPRRTIITHAEGDIDDIDLIANEKVLILLTKQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G++G  ++D+D +        H SVLFFS  G VY  + +++
Sbjct: 518 YIKRMPVNTFEAQSRATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PIGS  +RG  ++ +L + + E+IT+I+P  E     +  Y+V  TK GN+++  L  F 
Sbjct: 578 PIGSRTSRGTPIVQMLPIPKEEKITSIVPVDEFT---SEEYLVMLTKGGNIKKTALEAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGV 724
            I  +G IA+ L+  D++  V     E+ I++ ++ G  + F      +R   GR + GV
Sbjct: 635 NIRANGLIAISLEEGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L  GD+++ M I+  A  +  +     +       +      E  S   ++    +
Sbjct: 694 KSMKLKPGDELVGMDILPAAILETLDTETEAEIEEETIDIEETTEIEEISETTEAPNSNS 753

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                         ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +
Sbjct: 754 -----------TGPWVLVITMGGYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDKLATL 802

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN +++I++ +++G +IR  VN I + SR+  GV +    +D+ +  V  +   +  D
Sbjct: 803 RIVNSDEEIMMATNRGIIIRQTVNAISVQSRSATGVRVQRLDEDDAITGVAIVPP-DTGD 861

Query: 905 EAESTE 910
             E  E
Sbjct: 862 TGELEE 867


>gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162]
          Length = 851

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/912 (41%), Positives = 558/912 (61%), Gaps = 95/912 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EDNIFDKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL ARYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      D  ++ L+EI++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVREK+I  I DL D S
Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN----GYKPERFTLIGILK 359
            R+G R+ I+L++ A+A+V+LNQLY++T LQ  F V M+ L       +P+  TL  +LK
Sbjct: 302 SREGMRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLK 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++A +E+VV RRTKY LNKA++RAH+L GL  A+ N+DEV+RIIR S + + A++ELM 
Sbjct: 362 YYLAHQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMD 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L++VQ +AI+++RL  LTGL R+ +  E   
Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAE 455

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+ R+ LL +I++E+L++ ++    RRT I     D+  ED I RE+ V
Sbjct: 456 LMEKIRKLKAILADRNTLLRVIREEILAISEKYGDDRRTAIGFDAYDISMEDMIPRENTV 515

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++ LGY+KR+ +  +R+Q RGG+G  G+   D+D++ +L + +TH  V+FF++ G VY
Sbjct: 516 ITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVY 575

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P     ARG A+IN+L L  GERIT ++P  + E      Y++ AT+ G V++
Sbjct: 576 RLKAYEIPEAGRTARGTAIINLLQLMPGERITAVIPISKFE---EGHYLMMATRKGLVKK 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + D+  + + G  A+ L   DE++ V+    + D++L TK GQC+RF  + +R   GR
Sbjct: 633 TPIQDYANVRKIGLAAISLRDDDELIEVKATNDKKDVILVTKYGQCIRFKETDVRS-TGR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRGI+L  GD+V++M                                         
Sbjct: 692 VSMGVRGINLLDGDEVVAM----------------------------------------- 710

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L  +  ++L VSE G GKRTS  +F   NR GKG++   +++  + G
Sbjct: 711 ------------QLNTQGYYLLVVSENGMGKRTSISEFTCQNRGGKGVKCYKITE--KTG 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++    VN+ ++I++++ +G +IR+  ++I I  R T GV + + +    V S  ++RE
Sbjct: 757 NVIGAKAVNEENEIMMITTEGIIIRLQCSDISILGRITSGVKLINLSDGVTVASFAKVRE 816

Query: 900 SEIVD-EAESTE 910
            +    E ES+E
Sbjct: 817 KDEDKAEKESSE 828


>gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367]
 gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367]
 gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis]
          Length = 844

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/905 (39%), Positives = 548/905 (60%), Gaps = 85/905 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D++    +T V ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   ADQDYLGRVTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + K AR+ G+V+GKYHPHG++A+Y+++ RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPFRKSARMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  +L D+ KDT+DF+ NYDGS +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+     ++ NPD  L  LME + GPDFPTG +++G+  I+ AY TG+G+
Sbjct: 182 TNIPPHNLTEVISALHILMKNPDASLADLMEALPGPDFPTGGIVMGKAAIRRAYETGKGT 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R    IE+    +++IV TEIPY VNKA ++E+IAEL R+KRI  I D+ DE+DR G
Sbjct: 242 ITLRAKVDIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ F +NM+A+    P+   L  IL+ ++ F+ E
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTSFGINMLAIVNGAPKVLGLKAILQYYLEFQLE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   + A++EL+ R       
Sbjct: 362 VIRRRTEFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q++AIL++RL RLTGL R+ +  E   +   IK+ 
Sbjct: 415 -------------------FSLSDKQSQAILDMRLVRLTGLEREKVEKEYADVMANIKDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            +IL+S+ R   II +ELL ++++    RRT ++   +L +EDED I  ED+VV+++H G
Sbjct: 456 KEILASKERQQAIIYEELLEIQNKFGDDRRTELMVGEVLSLEDEDLIAEEDVVVSLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S ++AQ RGGKG  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPTSEFKAQNRGGKGVQGMGVHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L +N  E +  ++    +    +N  + F T  G V+R  + +F 
Sbjct: 576 PEYGRTAKGIPVINLLGINNNEHVQAVINV-ANPGENDNRDLFFTTVQGTVKRTPVDEFA 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE++ V+    + ++++ T LG  V F  + +R   GR++ GVRG
Sbjct: 635 NIRSNGLKAINLKEDDELIDVDIINADANMIIGTHLGYAVSFAATDVRSM-GRSATGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L + D VI  +++                                             
Sbjct: 694 IRLREHDYVIGASVLKP------------------------------------------- 710

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +  +SEKG+GK+T++ ++ I  R GKGI+  +VS  N  G L  +  
Sbjct: 711 ----------DSKVFVISEKGYGKQTAAAEYPIKGRGGKGIKTVNVSTKN--GPLAGLTT 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDE 905
           ++ ++ I+LV++KG +IR   +++    RAT GV +   A D  V ++ ++  E E  DE
Sbjct: 759 LDGDEDIMLVTNKGVMIRFSASDVSETGRATLGVHLIRLADDTAVATMAKVAKEDETADE 818

Query: 906 AESTE 910
           A   +
Sbjct: 819 APVVD 823



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 17/237 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR P+  +   R  G     + ++++D + D+ I++   +++  + LG+     
Sbjct: 620 TVQGTVKRTPVDEFANIRSNG--LKAINLKEDDELIDVDIINADANMIIGTHLGYAVSFA 677

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   I         R+              +  V   ++ G  ++   
Sbjct: 678 ATDVRSMGRSATGVRGI---------RLREHDYVIGASVLKPDSKVFVISEKGYGKQTAA 728

Query: 663 SDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++  I   G   +K          +  + T   + DI+L T  G  +RF  S +    G
Sbjct: 729 AEYP-IKGRGGKGIKTVNVSTKNGPLAGLTTLDGDEDIMLVTNKGVMIRFSASDVSE-TG 786

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R ++GV  I LA    V +MA V   D   DE         A          +  + 
Sbjct: 787 RATLGVHLIRLADDTAVATMAKVAKEDETADEAPVVDGETPATTDGPVVPESDDPTE 843


>gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002]
          Length = 849

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/900 (45%), Positives = 595/900 (66%), Gaps = 53/900 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D    K I  +S+ DEM +SYL+YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MKDTEIPKD----KNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +W+K++ K ARI G+V+GKYHPHG+ ++YDAL RM QD+S+ L L++GQGNFGS+
Sbjct: 57  YKGGYDWSKQFRKSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K + +L+DD+ KDT++++ NYD + +EP VL A+YPN+LVNG G
Sbjct: 117 DGDPAAAMRYTETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGE++DG +A+I+N DI +  LM+ I GPDFPTG VI+G+  IK  
Sbjct: 177 GIAVGMATSIPPHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVIIGKEIIKAG 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IRG   +E     RE++V+T +PYQVNK+ + E+IA+LVREK+I  I D+R
Sbjct: 237 YNVGRGSFKIRGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G RV I+L+ G   + I   LY+ TS++S F  N +A+   KP+   L   L  
Sbjct: 297 DESNREGIRVAIDLRNGVEPETIKRLLYKNTSIESSFGFNTLAIVDGKPKICDLKEFLTN 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+ FRE+VV+++TK+ L KA DRAH+L+GL+++V NLD++++IIR S  P+ A++ L+  
Sbjct: 357 FLTFREDVVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNT 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            W  +    LI L++D            LS+ Q  AILELRL +LT LG ++I  E+  L
Sbjct: 417 KWKINKSLKLISLVEDKKEK----NLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKL 472

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK    I++S+  LL +I +EL ++K++   PRRT+I++ +L+ + E+ I +E +++
Sbjct: 473 ADLIKGYKKIINSKKELLNVISEELKTIKEKFAVPRRTKIIDAILNYDIEETIQKESVII 532

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR  LS  + Q+RGGKG+SG+  RDED V     V+THTSVLFFS+ G VYK
Sbjct: 533 TVTLQGYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYK 592

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K W++P GS  ++GK+L NIL L   + I++IMPFP++ES   NL +VFAT  G VR+N
Sbjct: 593 IKAWKIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKN 652

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L DF  IN +GKIA+KLD  D+I+ VE C  + D++L+TK G+C+RF    +R+F GR+
Sbjct: 653 SLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRS 712

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G++GI L+  D+++S++I        D                               
Sbjct: 713 SKGIKGIELSPNDEIVSLSITNKEKIKKDT------------------------------ 742

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                        K   +F+L+++E G+GK+T + ++R++NR GKGI     S  N  G+
Sbjct: 743 -------------KSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRN--GS 787

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + + FPV + D +++ ++KG +IRV V EIR A R T+GV I   + DE+VVS  +I ++
Sbjct: 788 ICSSFPVIEGDDVMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDDN 847



 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 104/259 (40%), Gaps = 19/259 (7%)

Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +     F    R+  I A+     +E +      +E+ I+  T  G   R  +S+++   
Sbjct: 498 KTIKEKFAVPRRTKIIDAILNYDIEETIQ-----KESVIITVTLQGYIKRGALSSVKQQK 552

Query: 718 GRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            R   G  GI+    D V+ ++++  H    +      +  + A +      T +  SL 
Sbjct: 553 -RGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTTSKGKSLF 611

Query: 777 N-----DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           N     +     +I     +E   K   I+  + KG  ++ S  DF   N +GK   A  
Sbjct: 612 NILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGK--IAIK 669

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890
           +   +    +V V    D+  ++L +  G  IR    ++RI   R++KG+     + ++ 
Sbjct: 670 L---DPNDKIVGVEICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDE 726

Query: 891 VVSVERIRESEIVDEAEST 909
           +VS+    + +I  + +S 
Sbjct: 727 IVSLSITNKEKIKKDTKSD 745


>gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
 gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330]
 gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12]
 gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1]
          Length = 823

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/904 (40%), Positives = 550/904 (60%), Gaps = 87/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+ +++++ N  G L  +  V+
Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTSNITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD--EA 906
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +    +    E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAVEQTVEE 818

Query: 907 ESTE 910
           ++TE
Sbjct: 819 QATE 822


>gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102]
 gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 871

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/905 (41%), Positives = 544/905 (60%), Gaps = 46/905 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I  + +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SQERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  L+ G GNFGSVD DPPAA RYT
Sbjct: 64  KKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ      LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++D  VAVI NP+I    LM+ + GPDFPTGA ILG + I+ AY TGRGSI +
Sbjct: 184 PPHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGTSAIREAYTTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV++IE        DRE I++TE+PYQ NKAA++EKIAE+V EKR+  IAD+RDESDR 
Sbjct: 244 RGVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN LY+ T LQ+ F  NM+AL   +P+  TL   L  F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNSEPQVLTLKQFLSVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA++ LD ++ +IR +P+  TA+ EL+        
Sbjct: 364 ESIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELIT------- 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              T  LSEVQ  AIL+++L RLT L  D IR E + L  +I +
Sbjct: 417 -------------------TYGLSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II+ E+  +K    TPRRT I+ G  +++D D I  E  ++ V+  G
Sbjct: 458 LQDILARRERVLEIIETEVAQLKTNFATPRRTVILPGEGELDDRDLIANEKAIILVTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G++   ++D+D +        H S+LFFS  G VY  + +++
Sbjct: 518 YIKRMPVNTFEAQSRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  +RG  ++ +L + + E+IT+I+P  E     +  Y+V  TK GN+++ +L+ F 
Sbjct: 578 PASSRTSRGTPIVQMLPIPKEEKITSIVPVDEFS---SEEYLVMLTKGGNIKKTELAAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L+  D++  V     E+ +++ ++ G  + F  +   +R  + R + GV
Sbjct: 635 HIRANGLIAISLEEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLS-RATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L   D+++ M I+  A  +  + +        +      +  E    ++    E  
Sbjct: 694 KAMKLKNKDELVGMDILPAAILETLDIVT-------EAETEDIEAIETIETEDIEITETT 746

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     +   ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +
Sbjct: 747 EESAEVPSTGIVGPWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKTKDKLATL 806

Query: 845 FPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V ND+D+I++V+++G +IR  VN I I SR+  GV +    +D+ +  V  +      
Sbjct: 807 RIVNNDDDEIMMVTNRGIIIRQAVNAISIQSRSATGVRVQRLDEDDAITGVAIVPPDAAD 866

Query: 904 -DEAE 907
            +EAE
Sbjct: 867 AEEAE 871


>gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
 gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679]
          Length = 823

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 937

 Score =  873 bits (2256), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/918 (40%), Positives = 556/918 (60%), Gaps = 51/918 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               ++ + I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++  ++NK Y
Sbjct: 2   STDSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YDA+ R+AQ +S+R +LI+GQGNFGSVD DP AA RYT
Sbjct: 62  KKSARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK  H +L DL KDTVD+ PNYDGS Q P V+ AR PN+LVNG  GIAVGMATN+ 
Sbjct: 122 EVRMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMA 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C+A  D+P I  + LM+ I GPDFPTG +I GR+GI +AY TG+G + +R
Sbjct: 182 PHNLTEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIYGRSGIVDAYRTGKGRLHLR 241

Query: 252 GVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G  HIE  S      +RE+IV TEIPYQ NKA ++EKIAELVR+K++  I+++RDESD+ 
Sbjct: 242 GKYHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKD 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+
Sbjct: 302 GMRIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQPKIMTLRDLIAAFVRHRQ 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KA+ R H+L GL IA+AN+D ++  I+ S N + AR  L+  +W +  
Sbjct: 362 EVVTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGG 421

Query: 427 IKDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +  +++     S                    +    LS  Q  AIL+++L RLTGL +D
Sbjct: 422 VIAMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQD 481

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            ++ E   +   I +   IL +  +L+ +IK EL+ ++++    R+T+IV+   D    D
Sbjct: 482 KLQQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDFSRAD 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  + +V+TVS  GY K  P+S Y AQ+RGGKG+S   M+ +D +  + + STH +V+ 
Sbjct: 542 LISEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMVVTSTHNNVMI 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G V+  +V+ +PI S  +RG+ ++N+++L+  E++T I+P  ED    +N YV FA
Sbjct: 602 FTDRGRVFGLQVFEVPIASRGSRGRPMVNLIALDADEKVTAILPVTEDAKQNDNSYVFFA 661

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V+R +LS F  +  +G  A++L+  D ++ V     + DI+L +  G+ +RF  S
Sbjct: 662 TASGMVKRVQLSQFKNLRANGLRAVELNDGDNLIGVAITDGDQDIMLFSNEGKAIRFNES 721

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            IR   GR + GVRG+                               +        + E+
Sbjct: 722 KIRAM-GRTAKGVRGMR-------------------------VTLLANQGIEDEDTELED 755

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            +    D+     +S      +  ++  IL   E+GFGKRT   DF +  R GKGI A  
Sbjct: 756 DSQDDQDNDSVVAVSRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIK 815

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +  N  G LV    V D D I+L+SD GTL+R PV +I    R  +GV +   ++DE +
Sbjct: 816 TTARN--GELVQALAVTDADDIVLISDAGTLVRTPVGQIAQTGRNAQGVTLIRISQDESL 873

Query: 892 VSVERIR---ESEIVDEA 906
           VS+  +    E E+ +++
Sbjct: 874 VSIALVEGGSEDELDEDS 891



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 98/273 (35%), Gaps = 25/273 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV LS ++  R  G     V + D D +  + I      ++ F
Sbjct: 652 QNDNSYVFFATASGMVKRVQLSQFKNLRANG--LRAVELNDGDNLIGVAITDGDQDIMLF 709

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG-------------------ERITTI 633
           S+ G   +    ++      A+G   + +  L                      + +  +
Sbjct: 710 SNEGKAIRFNESKIRAMGRTAKGVRGMRVTLLANQGIEDEDTELEDDSQDDQDNDSVVAV 769

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETC 690
                   +     ++ A + G  +R  +SDF    R GK  + +       E++     
Sbjct: 770 SRVVSLVVAPQQGEILCACERGFGKRTPVSDFPVKGRGGKGIIAIKTTARNGELVQALAV 829

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           T  +DI+L +  G  VR P+  I    GRN+ GV  I +++ + ++S+A+V     D  +
Sbjct: 830 TDADDIVLISDAGTLVRTPVGQI-AQTGRNAQGVTLIRISQDESLVSIALVEGGSEDELD 888

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                  ++        D      L++    E 
Sbjct: 889 EDSLEAALADNIAQDGTDLRNSADLQDIELSEA 921


>gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88]
 gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 813

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/899 (40%), Positives = 558/899 (62%), Gaps = 86/899 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++     E  +  V I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+
Sbjct: 1   MNYMNNNEGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K Y KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  
Sbjct: 61  SPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K    +L D+ K+TVDF PN+DGS +EP V+ +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV+DG   +I++PD  +  LM  I+GPDFPT  +I+G++GI++AY TGR
Sbjct: 181 MATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIMGKSGIRSAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G +++R  + IE+    R +I+VTE+PYQVNKA ++E +AELV++KRI  I+D+RDESDR
Sbjct: 241 GKVIMRAKAEIEEEK-GRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+E+KR ++ +V+LNQLY++T +Q  F V M+AL   +P+   L  IL  ++ F+
Sbjct: 300 EGMRIVVEIKRDSNPNVVLNQLYKHTKMQDTFGVIMIALVDNEPKVLNLKEILVNYIEFQ 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E++ RRTK+ L+KA  RAH+L GL IA+ ++DEV+ +IR S N + AR  LM +     
Sbjct: 360 KEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E Q +AIL++RL RLTGL RD I  E N L   IK
Sbjct: 415 ---------------------FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIK 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +L IIK+EL  +K++    R+T I   + ++  ED I  E++VVT+++ 
Sbjct: 454 YLRDILNNEDLVLKIIKEELHEIKNKYGDERKTEIELNINEISIEDLIEEEEVVVTLTNS 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    Y +Q+RGGKG   +  +++DFV  +FI STH+ +LFF+++G VYK K + 
Sbjct: 514 GYIKRISSDAYSSQKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYE 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L ++  E +  ++   +D       Y++  TK G +++  L+ F
Sbjct: 574 IPEAGRTAKGTNIVNLLPVDANEHVREVIALKKDL---EEGYLIIGTKQGLIKKTSLNQF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G IA+ L   DE+L V+    + +I++ T+ G  +RF    +R   GRNS GV+
Sbjct: 631 KNIRKNGIIAINLKDEDELLKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPM-GRNSTGVK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ISL K D  +SM IV+  +                                        
Sbjct: 690 AISLRKDDVAVSMDIVVEDE---------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTV+E GFGKRT + ++ + NR+GKG+    V+  ++ G +V+  
Sbjct: 710 -------------YVLTVTENGFGKRTLASEYTLQNRNGKGLITHRVT--DKTGKIVSAR 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              D+D+++L++   T IR+ V+++ I +R+  GV +  T ++E+++++ +I   E  +
Sbjct: 755 VAKDSDELMLINSSNTAIRICVSDVSITNRSAMGVTLMRTYEEEKILAIAKISSDEDSE 813


>gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
 gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6]
 gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF]
 gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636]
          Length = 823

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  ++
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTIS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
 gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           peroris ATCC 700780]
          Length = 822

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 557/905 (61%), Gaps = 90/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE VD    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIYKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPDRVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    D    ++ Y+ F T+ G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSERSDDAYLFFTTRAGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TKLG  VRF  S +R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V+  N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVTDKN--GPLAGLLTVTGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-----E 905
           + +++++DKG +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDKGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGAENE 817

Query: 906 AESTE 910
            ES E
Sbjct: 818 IESEE 822


>gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
 gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082]
          Length = 823

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4]
          Length = 846

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/903 (41%), Positives = 535/903 (59%), Gaps = 71/903 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + +  V+I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   EEIAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  L++GQGNFGS+DGDPPAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL  R PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+  C+A+ID+P +D+  +M  I GPDFPT  ++ G  GI+ AY TGRG I 
Sbjct: 182 IPPHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSRGIQEAYLTGRGRIF 241

Query: 250 IRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H+E      R+ I+VTE+PY VNKA +LEKI ELV+EK+I  I  LRDESD++G 
Sbjct: 242 LRARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL+R    +V+LN LY +T LQ++F +NMVAL   +P+   L   L+AF+  R+EV
Sbjct: 302 RMVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQPQVLNLKLALEAFLRHRQEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAHVL GLAIA+ N+D V+ +I+ S +P  AR  L+ RSW    + 
Sbjct: 362 VTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVVI 421

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D++      S             +G   LS  Q +AIL++RL RLTGL +  I +E   +
Sbjct: 422 DMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E L+IL++  RL+ +I++EL+ ++ +    RRT I    +D+  ED I  E++VV
Sbjct: 482 IELISELLEILANPERLMAVIREELVEMRQQYGELRRTEIQYNHVDLRLEDLIQEENVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY 
Sbjct: 542 TLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KV+ LP G+  ARGK ++N+L L +GERI T                            
Sbjct: 602 KKVYELPQGTRTARGKPIVNLLPLEEGERINT---------------------------- 633

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719
                                  +L +    +   + + T  G   +  ++   R     
Sbjct: 634 -----------------------VLPIREFEEGKYVFMVTASGVVKKTSLAVFSRPRP-- 668

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              G+  + L +GDQ++   +         E + +       R           + +   
Sbjct: 669 --SGIIALELREGDQLVGADLTD----GEQEIMLFSSGGKVIRFSEQKVRPMGRTARGVK 722

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +E          +  +   ILT +E G+GKRT+  ++R+  R G+GI +   +  N  G
Sbjct: 723 GMELPPEHRVIALIIARNGTILTATELGYGKRTAIAEYRLQGRGGQGIISIQTTPRN--G 780

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +V    V + D+I+L++++GTLIR PV +I +  R T+GV + +  + ER+V VERI E
Sbjct: 781 QVVGAVQVEEEDEIVLITNRGTLIRTPVCDISLMGRNTQGVKLINLLEGERLVGVERIVE 840

Query: 900 SEI 902
              
Sbjct: 841 DGE 843


>gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A
 gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252]
 gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20]
 gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus
           aureus subsp. aureus str. JKD6008]
          Length = 886

 Score =  873 bits (2255), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/891 (43%), Positives = 549/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
 gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399]
          Length = 824

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/883 (42%), Positives = 545/883 (61%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+   K Y 
Sbjct: 16  EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYDGS +EP+VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L  +++ +E V+ RR
Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLRSVLGHYISHQETVITRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 376 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALME------------- 422

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 423 -------------GFKLTEKQAQAILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILA 469

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 470 DRNKVLAIIKNELIEVRDKYGDERRTEITFDASEMDIKDLIAEEDVVVTLTMSNYIKRIP 529

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P     
Sbjct: 530 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRA 589

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E +    + ++   T+ G V++  L++F  I +SG
Sbjct: 590 AKGTAIVNLLAVEADERITAVIQVREFK---PDRFLFLGTRKGVVKKTPLAEFANIRKSG 646

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R   GR + GVRGI+L+ G
Sbjct: 647 LRAVNLDEDDELIGVKFTDGENRIMLGTRHGKAITFPEDGVRSM-GRIARGVRGITLSDG 705

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I+                                                   
Sbjct: 706 DEVVAMDILKSG------------------------------------------------ 717

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G++V +  V  + +
Sbjct: 718 -----SEVLTVTEGGYGKRTAADEYRTQTRGGKGLINMKVTE--KTGSVVGIRVVRGSQE 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++L++ +G +IR  V+EI + SR T+GV + + A+++RV S+ 
Sbjct: 771 LMLITTEGIVIRTTVDEISLISRNTQGVKLMTIAENDRVASMA 813



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 9/222 (4%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              E+   +   +E+ ++  T      R P+   R    R  VGV+G+   + D V  + 
Sbjct: 500 DASEMDIKDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETDIVSDLL 558

Query: 740 IVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           I           +    ++                          +  I+          
Sbjct: 559 ITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADERITAVIQVREFKP 618

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++F+   + KG  K+T   +F  +N    G+RA ++ +      L+ V   +  ++I+L 
Sbjct: 619 DRFLFLGTRKGVVKKTPLAEF--ANIRKSGLRAVNLDE---DDELIGVKFTDGENRIMLG 673

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  G  I  P + +R   R  +GV   + +  + VV+++ ++
Sbjct: 674 TRHGKAITFPEDGVRSMGRIARGVRGITLSDGDEVVAMDILK 715


>gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303]
 gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303]
          Length = 830

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/901 (40%), Positives = 553/901 (61%), Gaps = 83/901 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +  I   + +  + I+ V I +EM+ SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M 
Sbjct: 12  SGEIDVQETDTGEDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMK 71

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G+ ++K Y K AR+ G+V+GK+HPHG+ A+YD+L RM Q++S+R  L++GQGNFGS+D
Sbjct: 72  EAGITYDKPYKKSARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSID 131

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE R++K +  +L D+ K+TV F+PNYDG+  EP VL A+ PN++VNG  G
Sbjct: 132 GDSAAAMRYTEVRMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTG 191

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNL EV DG + +IDNPD+ +  L   I+GPDFPT   ILG  GIK+AY
Sbjct: 192 IAVGMATNIPPHNLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGTEGIKSAY 251

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG I IR V+ IE+   D+ +IVV+E+PYQVNKA ++E IA LVR+K+I  I+DLRD
Sbjct: 252 ETGRGRIKIRSVADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRD 311

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR+G R+VIEL R  + +VILNQLY++T LQ  + +  +AL    P+   L  +L+ +
Sbjct: 312 ESDREGIRIVIELARNTNPNVILNQLYKHTQLQVTYGIINLALVDGVPKVLNLYELLQIY 371

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V+ +R++Y L KA +RAH+L GL I + NLDEV+  IR S     A+  L+++ 
Sbjct: 372 LNHRMDVIQKRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEK- 430

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L E Q +AIL++RL  LT + +D I +E N L 
Sbjct: 431 -------------------------FQLDEAQAKAILDMRLQNLTAIEQDKIESEYNELV 465

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I +  +I++S SR   IIK EL  +K+     RRT I     ++ +ED I  ED+++T
Sbjct: 466 EKIADLKEIIASDSRKYNIIKDELTELKENYADERRTDIQSSDEELSEEDLIPEEDVLIT 525

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +++ GY+KR+P++ Y  Q RGG+G +G+ ++D+DFV D+F+ ST   +L F++ G V  +
Sbjct: 526 ITNSGYIKRLPVTTYSKQHRGGRGVAGINVKDDDFVEDVFVASTRDYLLLFTNKGRVNCK 585

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ +P GS Q+RGKAL+N+  L   E +++++   E     ++  ++ ATK+G V++  
Sbjct: 586 KVYEIPQGSKQSRGKALVNLFELENDEAVSSMITVKEFS---DDWNLLMATKYGTVKKTP 642

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS F    +SG IA+ L+  DE+++V     +NDI+L +  G+ +RF  + +R   GR +
Sbjct: 643 LSSFKTRKKSGLIAINLNENDELVNVILTDGQNDIILVSSTGKAIRFAETNVRPM-GRAA 701

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L   D++ISM  +   +                                    
Sbjct: 702 QGVRGIRLNPDDRIISMDTISDDENAK--------------------------------- 728

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +LT+++ G+GKRT   ++R  NR G+G+    ++  N  G +
Sbjct: 729 ------------------LLTITQNGYGKRTKFEEYRRMNRGGRGVTTIQMTPRN--GPV 768

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V V  V D+D I++ S +G +IR+PV +IR+  R T+GV I +  ++++V+ V RI++ +
Sbjct: 769 VNVKTVRDDDDIVVTSYQGLVIRIPVKDIRVQGRNTQGVKIMNMRENDKVIGVARIKKDD 828

Query: 902 I 902
            
Sbjct: 829 D 829


>gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
 gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410]
          Length = 823

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 541/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY ++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8]
          Length = 978

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/927 (41%), Positives = 557/927 (60%), Gaps = 41/927 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           S++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+GM +MG+++NKKY K A++
Sbjct: 52  SINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSAKV 111

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G VMG YHPHG++AIYD + R+AQ +SLR  LI+GQGNFGSVDGDPPAA RYTE R+ +
Sbjct: 112 VGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRMTR 171

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L D+  DTVDF PNYD S  EP VL AR PN++VNG  GIAVGMATNIP HNL E
Sbjct: 172 LAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNLTE 231

Query: 198 VVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           V++  +A++         DL+ ++E ++GPDFPTG  + GR  +   Y TGRG  ++R  
Sbjct: 232 VLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLYGRGNLVQTYKTGRGRFMMRAK 291

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             +E+ +G R+ I+ TEIPYQVNK+ ++++IAELV EK + DI+D+RDESDR G R+VIE
Sbjct: 292 CGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRIVIE 351

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA  +++LNQLY++TS+Q  FS+  +A++  +P+   L   + AF+  R +VV RRT
Sbjct: 352 LKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQPKELPLNEAIWAFIEHRIDVVRRRT 411

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS------------ 421
            +LLNKAR+R HVL+G  IA+ +LD+V+RIIR S +   AR  L                
Sbjct: 412 AFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLRGTEL 471

Query: 422 -----WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                  A    DL      +  +  + GT+ LS  Q  AILEL+L RLT L  D++ NE
Sbjct: 472 QGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDELLNE 531

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L ++   I E   IL+S  +L  +I +EL  ++D+    RRT I++   ++  ED I  E
Sbjct: 532 LRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDARRTTILDESTELTLEDLIADE 591

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + VTVS+ GY+KR P+S YR QRRGG GR G+  R+EDFV  L I STH  +L F++ G
Sbjct: 592 QVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDSTHAYLLCFTNSG 651

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  KV+ +P      +GKA+ +++ L  GE++ TI+P  +        YV+FAT++G 
Sbjct: 652 RVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVTILPVKDLA--EEGKYVLFATRNGT 709

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L DF  +   G IA+ +D  DE+++      E  I L T  G  +RF    +R  
Sbjct: 710 VKKTALKDFSNVMARGIIAIGIDKEDELITARITDGEQVIFLATHDGMAIRFNEQDLRPM 769

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G RGI+L K D VI  A+    +A   +R+          ++ +   E   S  
Sbjct: 770 -GRPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLELAAKTGLTAQVEAVLDEAGESAA 828

Query: 777 ND---------------SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                            S       ++  ++L L    IL+VS+ G+GKRT    +R+ +
Sbjct: 829 AQPLELAEPGELGAPVISEAAAAKLQQLDEKLGLTPCLILSVSDNGYGKRTDVDSYRLQS 888

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R GKG+     +   +IG + ++  V+D  +++++S  G +IR+    +R A RAT GV 
Sbjct: 889 RGGKGVINMKSTP--KIGKVASIQLVDDTTEMMVISQFGKIIRIDTKSVRAAGRATMGVK 946

Query: 882 IFSTAKDERVVSVERIRESEIVDEAES 908
           +     D++V +   I   +     E+
Sbjct: 947 LLDLDTDDKVAAAMVIPPEDPKSPTEN 973



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 79/233 (33%), Gaps = 15/233 (6%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF-----IVSTHTSVL 590
           E ++   +H G   R      R   R   G  G+ ++  D+V                + 
Sbjct: 746 EQVIFLATHDGMAIRFNEQDLRPMGRPAFGNRGITLKKNDYVIGAAVTPSNEARNKQRLE 805

Query: 591 FFSSLGFVYKEKVW-----RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
             +  G   + +             P    +       +         +   +++     
Sbjct: 806 LAAKTGLTAQVEAVLDEAGESAAAQPLELAEPGELGAPVISEA-AAAKLQQLDEKLGLTP 864

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKL 702
             ++  + +G  +R  +  +   +R GK  + + S  +I  V          ++++ ++ 
Sbjct: 865 CLILSVSDNGYGKRTDVDSYRLQSRGGKGVINMKSTPKIGKVASIQLVDDTTEMMVISQF 924

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           G+ +R    ++R  AGR ++GV+ + L   D+V +  ++   D         +
Sbjct: 925 GKIIRIDTKSVRA-AGRATMGVKLLDLDTDDKVAAAMVIPPEDPKSPTENGAL 976


>gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
 gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245]
          Length = 828

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/898 (41%), Positives = 537/898 (59%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++A+YD+L R+ QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG +AVI+NP+I++  +M+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PQNLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIYGYEGVRQAYLTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  ++  +V  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVDGVPRVLNLKEMMHYYVKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  LM+R          
Sbjct: 362 RRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E     + I     I
Sbjct: 412 ----------------FGLSEIQSKAILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LASPQKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L   E+I   +     E   +  Y+V AT +G V++  L DF    R
Sbjct: 576 RAARGRSLANIMELRPTEQIKAYINIRNFE---DPGYIVMATTNGIVKKTPLDDFSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE+L       ++ I+L       VRFP + IR   GR ++GV+GI+L 
Sbjct: 633 TGIAAITIEEGDELLDARLTDGDHQIILAKSSAYAVRFPENEIRSM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 EGEKCISMVTTKRTDTA------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  +IGALV +  VND+
Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KIGALVGLIDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I+++  G + R  V+++R+  R T GV +      +++ ++ R+ +S+   +++S
Sbjct: 758 DDLIIITTNGIVNRQHVSDVRMTGRNTSGVRLIRLMAGDKISALARVPKSDEEVDSDS 815


>gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 817

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/900 (40%), Positives = 549/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +  +KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+L II++EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D     + Y+ F T+ G V+R  ++DF  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVEQD--HSQDSYLFFTTRLGVVKRTSVADFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +V                                                 
Sbjct: 693 DGDQVVGAGVVS------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN  
Sbjct: 705 -----DNDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  +  +  E
Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 817


>gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath]
 gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath]
          Length = 860

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/904 (42%), Positives = 536/904 (59%), Gaps = 71/904 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +LI+GQGNFGSVDGDPPAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF PNYD S +EP VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C+A+I+NP+  +  LM  + GPDFPT  +I G  GI+ AY TGRG I +R  
Sbjct: 186 NLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGIINGAAGIREAYLTGRGRIYLRAR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E   G R+ I+V E+PYQVNKA +LEKIAELV+E ++  I+ LRDESD+ G R+VIE
Sbjct: 246 CQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGMRMVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG + +V+LN LY+ T +QS+F +NMVAL   +P    L  ++ AF+  R EVV RRT
Sbjct: 306 LRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGRPRLMNLRDLIAAFIDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL GLA+A+AN+DEV+ +I+ SP+P  A+  L+ R+W    + +L++ 
Sbjct: 366 LHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVVTELLER 425

Query: 434 IDDSSYTIGSD---------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D +  +   D         G   LS +Q +AIL+LRL RLTGL +D I  E  +L  +I
Sbjct: 426 ADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYRALLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            + LDIL+  +RL+ +I+ EL++++++   PRRT I+   LD+  ED I  EDMVVTVSH
Sbjct: 486 ADLLDILAKDTRLMQVIRDELVAIREQFGDPRRTEIIADRLDLSAEDLITEEDMVVTVSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS YRAQRRGG+G+     ++ED++  L + +TH ++L FSS G VY  KV+
Sbjct: 546 EGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTILCFSSSGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP+ S  ARG+  +N+L L +GERI                                  
Sbjct: 606 ELPVASRTARGRPFVNLLPLEEGERINA-------------------------------- 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVG 723
                      + +   DE            I + T  G   +  +S   R        G
Sbjct: 634 ----------ILPIREFDEAHF---------IFMATASGTVKKVALSEFERPRP----SG 670

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
              I L   D+++ +AI         + + +           +       +      +  
Sbjct: 671 KIAIELRDDDRLVDVAITN----GEQDVMLFSSDGKVVCFHETDVRAMGRTAAGVRGMTL 726

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
               +    +   E  +L ++E G+GKRT   +F    R G+G+ A   S  N  GA+V 
Sbjct: 727 QEGRKVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQGVIAIQTSARN--GAVVG 784

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V D D+I+L++D GTL+R  V+EI + SR T+GV +      E+VV ++RI      
Sbjct: 785 AALVEDEDEIMLITDAGTLVRTRVSEISVLSRNTQGVTVIRLNPGEKVVGMDRIGSLPGG 844

Query: 904 DEAE 907
           +E E
Sbjct: 845 EEDE 848



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 99/222 (44%), Gaps = 16/222 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+V LS +   R  GK    + +RD+D + D+ I +    V+ FSS G V    
Sbjct: 650 TASGTVKKVALSEFERPRPSGKI--AIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFH 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A   A +  ++L +G ++  ++   E         V+  T++G  +R +L
Sbjct: 708 ETDVRAMGRTA---AGVRGMTLQEGRKVIALIIASE-------GTVLNITENGYGKRTRL 757

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +F +  R G+  + + +       +       E++I+L T  G  VR  +S I V + R
Sbjct: 758 EEFPRHRRGGQGVIAIQTSARNGAVVGAALVEDEDEIMLITDAGTLVRTRVSEISVLS-R 816

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           N+ GV  I L  G++V+ M  +       ++ +      SA+
Sbjct: 817 NTQGVTVIRLNPGEKVVGMDRIGSLPGGEEDELDNGSGDSAE 858


>gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2]
          Length = 807

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/889 (40%), Positives = 543/889 (61%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++  +
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMAVV 807



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/212 (19%), Positives = 76/212 (35%), Gaps = 10/212 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  T  G   R   S  R    R   GV+G+ +   D V ++      D         +
Sbjct: 507 VITLTNNGYIKRMANSEFRA-QRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGK 565

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +   K         +     + +L    S E   +    +      +++   + KG  KR
Sbjct: 566 VYRAKGYEIPEYGRTAKGIPVINLLGIDSAEKIQAIISVEGKAEAGKYLFFTTLKGTVKR 625

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T+   F  SN    G+ A  + +      LV V   N N ++I+ +  G  +    N +R
Sbjct: 626 TAVTAF--SNIRSNGLIAISLKE---DDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVR 680

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R   GV      +++ VV    + E++ V
Sbjct: 681 DMGRTASGVRGIRLRENDYVVGAAILDENKEV 712


>gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36]
 gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36]
          Length = 826

 Score =  872 bits (2254), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/899 (41%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T+EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G   +N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPAVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R   GR + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSM-GRIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
 gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01]
 gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B]
 gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A]
 gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C]
 gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04]
          Length = 823

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23]
 gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W]
 gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II]
          Length = 873

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/904 (40%), Positives = 547/904 (60%), Gaps = 86/904 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E     ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817

Query: 907 ESTE 910
              +
Sbjct: 818 SKPD 821



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++DED + ++ + S   
Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++              +   +   +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I ++    GR ++GVR I +    +V +MA V     D D+     +  S    
Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDG 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +  +++          +  +S+   +    + +
Sbjct: 830 SAAPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864


>gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
 gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933]
          Length = 823

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 543/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  ++Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKEDQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp.
           aureus EMRSA16]
          Length = 887

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/891 (43%), Positives = 549/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 4   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 64  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 124 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 184 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 244 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 304 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 364 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 416 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 458 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 518 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 578 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 636 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 695 TLREGDEVVGLDVAHANSVDE--------------------------------------- 715

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 716 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 762 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 812


>gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
 gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502]
 gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408]
 gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317]
          Length = 823

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 542/900 (60%), Gaps = 85/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V++T EM++S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD + +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV     ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA VILN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  + EV+
Sbjct: 303 IVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  +++R         
Sbjct: 363 TRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I NE   L   I++  D
Sbjct: 414 -----------------FDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  IIK EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + +RAQRRGG+G  G+ + ++DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E I  I+    +       Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPIINLLGIDSSESIQAIIAVTGEAE--EGHYLFFTTRQGTVKRTSVTAFANI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     +++I++ T  G  V F   A+R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+                                                    
Sbjct: 694 LREEDYVVG--------------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  + Q +L ++EKG+GKRT   ++ +  R GKGI+  ++++ N  G L  +  V+
Sbjct: 703 --AALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L++DKG +IR  V+ +    R+T GV +     D +VV++  +         E 
Sbjct: 759 GDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEE 818


>gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 832

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/901 (42%), Positives = 557/901 (61%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            ++   +  + I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+  NK
Sbjct: 2   NQKAARVEKIDIDKEMRGSYLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YD + RMAQD+S R  LI+G GNFGSVDGD  AA R
Sbjct: 62  PHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+      LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGM+T+
Sbjct: 122 YTEARMSSITTELLTDINKETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG V +I  P+I    LM II+GPDFPTG  I+GR  I  AY TGRG + 
Sbjct: 182 IPPHNLGEVIDGVVKLITKPEITTKELMTIIKGPDFPTGGQIMGRGSIYKAYKTGRGKLT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE    +R+QI+V E+P+QVNKA +++KIA LV++++I  I+D+RDESDR G R
Sbjct: 242 VRAKTRIEDLKVNRKQIIVDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ +V+LNQLY+++ LQ  FS  M+AL   +P+  +L  IL+ ++  +++V+
Sbjct: 302 IVIELKREATPEVVLNQLYKHSRLQITFSTIMIALVNNEPKVLSLKEILEHYLEHQKKVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKY L+KA DRAH+L G  IA+AN+DE+V +I+ + + +TAR  LM           
Sbjct: 362 TRRTKYDLDKALDRAHILEGYKIALANIDEIVEMIKEAEDVDTARIALM----------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  AIL +RL  LTGL R+ I  E + L  +I     
Sbjct: 411 ---------------DDYELSEIQANAILRMRLQSLTGLERNKIDTEYDELQAKITRYRS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +LL I+K+E+L +KD+ +  RRT+I++ + D+E ED I  E +V+T++H GY+K
Sbjct: 456 ILADEDKLLNIVKKEILEIKDKYNDKRRTKIMDKVTDLEIEDLIEEEQIVITMTHQGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L +YR+QRRGGKG  G+  ++EDFV ++F  +TH   LFFS+ G VY+ K +++P  
Sbjct: 516 RMALDLYRSQRRGGKGVIGISTKEEDFVENIFTTTTHHKFLFFSNQGRVYRLKGYQIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QARG A+IN+L L + ERIT ++P  E      + Y++ ATK+G +++  L  +   N
Sbjct: 576 GRQARGTAIINLLELKEEERITAVIPVKEFP---EDAYLIMATKNGLIKKTSLDAYDT-N 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G I + L   DE++ V    ++ +I+L +K  + + F  S +R   GRNS GVRGI L
Sbjct: 632 YTGLIGINLRENDELIGVRIIDEDENIILVSKNAKAIHFNESDVRSV-GRNSYGVRGIRL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D VI M I                                                 
Sbjct: 691 SEEDYVIDMGI------------------------------------------------- 701

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + +L ++E G+GK+T   ++RI NR GKGI   ++++ N  G L A   V+ 
Sbjct: 702 ----DSAGEHLLVITENGYGKKTPLTEYRIQNRGGKGILTANITEKN--GQLAAAKIVDA 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           N ++++++ +G +IRV   EI    R T GV I +  +D++VVS+ RI E EIVDE E  
Sbjct: 756 NSEMMVITHEGIIIRVQAEEISTTGRNTIGVKIINVEEDDKVVSLARINEDEIVDELEEL 815

Query: 910 E 910
           +
Sbjct: 816 D 816


>gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334]
 gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334]
          Length = 873

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/904 (40%), Positives = 546/904 (60%), Gaps = 86/904 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA  R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E     ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817

Query: 907 ESTE 910
              +
Sbjct: 818 SKPD 821



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++DED + ++ + S   
Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++              +   +   +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I ++    GR ++GVR I +    +V +MA V     D D+     +  S    
Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDG 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +  +++          +  +S+   +    + +
Sbjct: 830 SAAPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864


>gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
 gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri
           DSM 16041]
          Length = 835

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/898 (39%), Positives = 541/898 (60%), Gaps = 84/898 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y 
Sbjct: 2   SNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE
Sbjct: 62  KSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPT
Sbjct: 122 ARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPT 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY TGRGSI++R 
Sbjct: 182 HNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSIIVRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IE+    +++I+V EIPY VNKA ++ +IA+L R K I  I D+ DE+DR G R+VI
Sbjct: 242 KVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E+VV RR
Sbjct: 302 DVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVVRRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA+ R H++ GL IA+ ++DE++ IIR S   E A+ ELM              
Sbjct: 362 TEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM-------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                       G   LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  DIL+
Sbjct: 408 ------------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYQKLTEAIADYKDILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + R+  II  EL+ ++ +    RRT +    + ++EDED I  +D++VT++H GY+KR+
Sbjct: 456 HKERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  +++Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY  K + +P    
Sbjct: 516 PVDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPEYGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN+L+++  E+I+ ++    + +  ++ ++ F TK+G V+R  + +F  I  +
Sbjct: 576 SAQGIPIINLLNIDSQEKISAVINVSHETND-DDKFLFFTTKYGTVKRTPVPEFKNIRSN 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+    +  +++ T+ G  + F  + +R   GR + GVRGI L  
Sbjct: 635 GLKAINLHDDDELMDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIRLRD 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D VI  A +                                                  
Sbjct: 694 HDFVIGAAPLH------------------------------------------------- 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               ++  +L +SE GFGK+T + ++ I  R G G++  +V+K N  G LV +  V  ++
Sbjct: 705 ----QDDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPLVGMTTVAGDE 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            I+LV+D+G +IR  +  +    R+  GV +       +V ++ ++ + +  D+A + 
Sbjct: 759 DIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKEDDGDDAPAA 816


>gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
 gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909]
 gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1]
          Length = 833

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/885 (42%), Positives = 541/885 (61%), Gaps = 86/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +   +I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K
Sbjct: 5   DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+ KYHPHG++++YDA+ RMAQD+S R  L++G GNFGS+DGD  AA RYTE 
Sbjct: 65  SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  ++ D+ K+T+DF+PN+DG   EPVVL AR+P++LVNG  GIAVGMATNIP H
Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C+A ++NP+ID+  LME I+GPD PTGA+ILG  GI+NAY TG GSI++R  
Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTKGIRNAYETGNGSIMMRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I +  G +  I+VTEIPYQVN+  ++EKIAELV+EKR+  I DLR+ES+R+G R+VIE
Sbjct: 245 CEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  +  V+LN L++ T LQ  + +NM+AL   +P+   L  I+ A++  + EV+VRRT
Sbjct: 305 LRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQPKVLNLKEIIAAYIKHQVEVIVRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA DRAH+L G  IA+ ++D ++ IIR S N E A   L+               
Sbjct: 365 QFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISE------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q +AILE+RL RLTGL RD I +E  +L   I +  DIL++
Sbjct: 412 -------------FSFSERQGKAILEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILAN 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVP 552
             R+ GII+ EL  V  +    RRT IV G     EDED I  E +++T+++ GY+KR P
Sbjct: 459 EYRVHGIIRDELTEVMIKHGDDRRTEIVRGSDFDIEDEDLIPEEQVIITLTNNGYIKRQP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S YR+Q RGG+G  G+   D+D+V +L   STH  +LFF++ G VY++K + +P     
Sbjct: 519 ISTYRSQNRGGRGVQGMGTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPEYGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++NI+ + Q E I+ I+P  E      N ++ FAT+ G V+R  LS F  I  +G
Sbjct: 579 AKGLPIVNIIEIAQDEEISAIIPVKEFN---ENEFLFFATRTGVVKRTTLSAFGNIRTNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L   DE++ V   T  NDI++ +  G+ V F    +R   GR + GVRGI+L +G
Sbjct: 636 LIALSLREDDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSM-GRTAAGVRGINLEEG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +  + M IV                                                   
Sbjct: 695 EVAVGMEIVTE------------------------------------------------- 705

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +Q IL VSEKGFGKRT   ++R ++R GKG++  +++  N  G+LVA+  V   + 
Sbjct: 706 ----DQEILIVSEKGFGKRTPISEYRKTSRGGKGVKTINITDKN--GSLVAMKTVTGEED 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++V++KG +IR P+++I    RAT+GV +     D+ V SV  +
Sbjct: 760 LLIVTNKGIIIRTPISQISQTGRATQGVTLIRLTDDQFVSSVALV 804


>gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1]
 gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1]
          Length = 802

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/889 (42%), Positives = 553/889 (62%), Gaps = 88/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +EKGI  V+I D +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MGV  NK Y
Sbjct: 2   KEKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG++A+YD L RMAQD+S+R  L++GQGNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVDF PNYDGS +EPVVL  R PN+L+NG  GIAVGMATNIP
Sbjct: 122 EVRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  V +IDNP    + ++  I+GPDFPT  +I G+  I  AY TG+G I +R
Sbjct: 182 PHNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIYGKDEILKAYKTGKGVIKVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E T+  +E +VVTE+PYQVNKA ++EKIA L R+K+I  I DLRDESDR G R+V
Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG +AD+I+NQLY++T ++  + +N+V +   KP+  TL  +L+ F+  R+ VV+R
Sbjct: 302 IELKRGENADIIINQLYKFTQMEIAYGINLVGIVNNKPKTLTLRDLLEQFLEHRKVVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+LL KA DR H+L GL  AV N+DEVV +I+ S N   A+ +LM R           
Sbjct: 362 RTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q +AIL++RL RLTGL  + +RNE       I+    IL
Sbjct: 411 ---------------FELSDKQAQAILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++S L+GIIK+EL+ +K++    RRT+IV    ++  ED I  +++VVT+S+ G++KR 
Sbjct: 456 NNKSVLMGIIKEELIDIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +++Q+RGGKG++G     EDF+ D+ + + H++++FF++ G ++  KV+ LP  + 
Sbjct: 516 PLSNFKSQKRGGKGKTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELAR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GK + N++SL++ E++  ++   E +    + Y+   TK G V++  L  F     S
Sbjct: 576 DAKGKYIANLISLDKDEKVAAMISTKEFDR---DRYIFMCTKEGIVKKTSLDAFSSGR-S 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+KL   DEI+     ++ + I ++T+ G+C++F  S +R   GRN+ GV+GI+L K
Sbjct: 632 GIIAIKLRDGDEIVDASLISKNDSIFISTRKGKCIQFNSSEVRNM-GRNATGVKGITLTK 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM  V                                                  
Sbjct: 691 DDKVVSMEAVK------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                +  ILTV+ KGFGK +   D+RI +R GKGI+ + V++    G +V    V   D
Sbjct: 702 ----GDPLILTVTTKGFGKSSLITDYRIQSRGGKGIKLSKVTER--TGEIVGARQVKLED 755

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            ++L+S    +IR+ V++I I  R T+GV +     D+ ++S + IRE 
Sbjct: 756 DVMLISKSSKVIRLSVSDIPILGRDTQGVKLMGL--DDEIISFDVIRED 802



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 58/190 (30%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D +     +  + +  +  E   ++L   ++ ++T+S +GF KRT   +F+   R GKG 
Sbjct: 471 DIKNKYGDERRTQIVNSSEEINIEDLIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKG- 529

Query: 828 RATDVSKIN-EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK-------- 878
                   N +   +  +    ++  ++  ++KG +  + V E+   +R  K        
Sbjct: 530 ---KTGAGNVKEDFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPELARDAKGKYIANLI 586

Query: 879 ---------------------------------------------GVVIFSTAKDERVVS 893
                                                        G++       + +V 
Sbjct: 587 SLDKDEKVAAMISTKEFDRDRYIFMCTKEGIVKKTSLDAFSSGRSGIIAIKLRDGDEIVD 646

Query: 894 VERIRESEIV 903
              I +++ +
Sbjct: 647 ASLISKNDSI 656


>gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
 gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina
           acetivorans C2A]
          Length = 929

 Score =  872 bits (2253), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/902 (43%), Positives = 554/902 (61%), Gaps = 86/902 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E      E +  G+T++ I DEM+ SY+ YA++VI+GRA+PD RDGLKPVHRRILF M +
Sbjct: 60  ETEDEGPEPDNNGVTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKE 119

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  +K Y K AR+ G+V+GKYHPHG+AA+YD++ RM QD+SLR  LI+GQGNFGS+DG
Sbjct: 120 SGITHDKPYKKSARVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDG 179

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ + A  +L D+ K+TV FRPNYDGS +EP VL A+ PN+L+NG  GI
Sbjct: 180 DEAAAMRYTEVRMDRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGI 239

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HN+ EV+DG + +IDNP+  +  LM +++GPDFPTGA ILG  GI++AY 
Sbjct: 240 AVGMATNMAPHNISEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGTAGIRSAYT 299

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + IR V+ I++   DREQI+VTE+PYQVNKA M+E IA+LVREK I  I+DLRDE
Sbjct: 300 TGRGPVKIRAVAEIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDE 359

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR+G RVVIEL +G +A V+LNQLY++T +++ F V  +AL   KP+   L  +L+ ++
Sbjct: 360 SDREGIRVVIELSKGTNARVVLNQLYKHTQMETTFGVINLALVDGKPQELNLKQLLEIYL 419

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +R E+V +RT Y L K+ +RAH+L GL IA+ N+D VV +I+ S N + AR+ LM    
Sbjct: 420 EYRMEIVQKRTLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLM---- 475

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L EVQ +AIL++RL RLTGL    I  EL +L  
Sbjct: 476 ----------------------DNFTLDEVQAKAILDMRLQRLTGLETKKILEELENLIK 513

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   IL S      II+ ELL +K++    RRT+IV    ++ DED I   D+VVT+
Sbjct: 514 LIAELKKILESDELKYEIIRTELLGLKEKYGDVRRTKIVHYTEEVTDEDLIPEADVVVTI 573

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++ GY+KR+PL  Y  QRRGG+G  G+ M++EDFV +LFI STH  +LFF++ G +Y +K
Sbjct: 574 TNSGYIKRIPLDTYSMQRRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNRGRLYWQK 633

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P GS Q+RGKA++N+L L +GE +  ++P  E      + Y++ AT+ G  ++  L
Sbjct: 634 VYEIPEGSRQSRGKAIVNLLELREGEMVNAMIPVKEFA---EDRYLLMATRAGTTKKTPL 690

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F    ++G IA+ LD  DE++ V     + ++L+ +K G+ +RF    +R   GR + 
Sbjct: 691 SEFRNPRKAGIIAVSLDEGDELVKVLLTDGKQEVLMVSKKGKAIRFSEDDVRPM-GRTAR 749

Query: 723 GVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           GVRG+ L    D+V+SM +V                                        
Sbjct: 750 GVRGMILDGPEDEVVSMDLVDETTT----------------------------------- 774

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L+V+E GFGKRT    + +  R GKG+     +  N  G +
Sbjct: 775 ------------------LLSVTENGFGKRTEYSQYPMHRRGGKGVITIVTNLRN--GFV 814

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             V  V ++D++++ S +G +IRVP  +I I  R T+GV I +    ++VV + RI+  +
Sbjct: 815 ANVKSVAEDDELMITSSEGIIIRVPAKDISIQGRNTQGVRIMNMKSGDKVVGMARIKAED 874

Query: 902 IV 903
             
Sbjct: 875 ED 876


>gi|153007330|ref|YP_001381655.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
 gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 891

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/907 (43%), Positives = 545/907 (60%), Gaps = 102/907 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 27  QVAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTE RL++
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLER 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A FLL D+ K+TVD+ PN+D S  EP+VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D    +I+NP + +  LM  I GPDFPT  +I GR GI+ AY  GRG+I +R  + IE
Sbjct: 207 VLDAVEHLIENPKVTIPELMRFIPGPDFPTAGIIQGRDGIRAAYEKGRGTIQVRARASIE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IA+LVREKR+  I+DLRDES R+G RVVIELKR
Sbjct: 267 VHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q+ F V ++A++G +P    L  +L+ FVA R +VV RRT++ 
Sbjct: 327 DAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQPRILNLKELLERFVAHRRDVVTRRTRFE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+GL IA+ +LDE++ +IR +P+ + AR  L+ R                
Sbjct: 387 LRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKIILRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I+    D   ED I  E+MVVTVSH GYVKR P+S+Y
Sbjct: 481 LMEVIAGELREVKQLFADERRTEILGEATDYSTEDLIAEEEMVVTVSHAGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQRRGG+G++G   RDEDF+  +F+ STH+ +L FS  G VY  KV  +P     ARGK
Sbjct: 541 RAQRRGGRGKTGAATRDEDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGK 600

Query: 617 ALINILSLNQGERITTIMPFPEDESS-------------------------WNNLYVVFA 651
            ++N++ L+QGE++  I+P                                    YV  A
Sbjct: 601 PIVNLVQLSQGEKVAAILPVRRLPEPAGIVEEAEAAAGAEGAEPVEPAAPGEGGQYVFMA 660

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G +++ +L  F +   +G IA+ ++  DE+++      ++ +LL+T  G  +RF  S
Sbjct: 661 TRRGLIKKTRLEQFSRPRAAGIIALGIEEADELIAARLIDGKSHVLLSTAQGMAIRFEES 720

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GV+GI+L  GD V+S   +  A    +                      
Sbjct: 721 DVRAM-GRTAYGVKGITLEPGDAVVSAETIPAAPPQGEPA-------------------- 759

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ILTV+  G+GKRT   ++R+ +R GKGI    
Sbjct: 760 --------------------------PTILTVTRNGYGKRTELAEYRVQSRGGKGIITIK 793

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDER 890
            ++ N  G +VA   V+D ++++L+++ G LIR+P   I +  R T+GV + +   K+E 
Sbjct: 794 TTERN--GPVVAAALVSDVEEVMLITNGGMLIRMPAKGISVIGRNTQGVRLITLESKEEE 851

Query: 891 VVSVERI 897
           VV V R+
Sbjct: 852 VVGVARV 858


>gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK150]
          Length = 826

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D     +DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 873

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/904 (40%), Positives = 547/904 (60%), Gaps = 86/904 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E     ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817

Query: 907 ESTE 910
              +
Sbjct: 818 SKPD 821



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++DED + ++ + S   
Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++              +   +   +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I ++    GR ++GVR I +    +V +MA V     D D+     +  S    
Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDG 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                +++          +  +S+   +    + +
Sbjct: 830 SAEPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864


>gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 826

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/908 (41%), Positives = 547/908 (60%), Gaps = 106/908 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I +EM+ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M + G+   KKY KC
Sbjct: 3   NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEV+ KYHPHG+ A+YDAL R+AQD+++R  LI+GQGNFGS+DGDPPAA RYTE R
Sbjct: 63  AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL D+ K+TV F PN+D + QEP+VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+VD  + +++NP I ++ L+E ++GPDFPTG  I G  GI++ Y TGRG I IR   
Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIYGIEGIRDLYLTGRGLIRIRAKV 242

Query: 255 HIE------------------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
            IE                  +    +E+I++TEIPYQVNKA ++EKIAELVREK+I  I
Sbjct: 243 KIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEGI 302

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            ++RDES+R+G RVV+ELK+G   +V+LN LY++T +++ F   ++A+   +P    L  
Sbjct: 303 TEIRDESNREGIRVVLELKKGEMPEVVLNNLYKHTQMETTFGGILLAIVDGQPRILNLKE 362

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L  F+  R++VV++RT + L KA  +AH+L+GL IAV NLDEV+ IIR S NPE A+ +
Sbjct: 363 ALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEAKMK 422

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM R                            L+E+Q +AIL++RL RLTGL R+ I  +
Sbjct: 423 LMNR--------------------------FPLTEIQAQAILDMRLQRLTGLEREKIIQD 456

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
             ++  EI+    IL S   +  IIK EL+ +K +    R+T IV    ++  ED I +E
Sbjct: 457 YETILKEIERLKAILESEELVRNIIKDELIEIKQKYGDERKTEIVTETKEINIEDLITQE 516

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMV+T++HLGY+KR  LS YR+Q+RGGKG + +    +D++  + I STH  ++FFS+ G
Sbjct: 517 DMVITLTHLGYIKRTSLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFG 576

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY  KV+++P     ++GKA++N+L L +GE+ITT +   +        Y++  TK G 
Sbjct: 577 RVYCLKVYQIPEAGRVSKGKAIVNLLPLQEGEKITTALVCKD----IEEGYLMMFTKKGF 632

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  L +F  I + G IA+ L+  DE++SV   T  N +++ TK+G  VRF    +R  
Sbjct: 633 VKKTSLEEFKNIRQKGVIAIDLEEGDELISVRKTTGNNQLIIATKMGMAVRFSEIDVRPM 692

Query: 717 AGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GR + GV GI  ++  D+V+S  +V                                  
Sbjct: 693 -GRTARGVIGIRFSEPEDEVVSADVVSEG------------------------------- 720

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                  F+LT++EKG GK+T   ++R+ +R G G++   +S  
Sbjct: 721 ----------------------SFVLTITEKGIGKKTPIEEYRLQHRGGTGVKNIKLSL- 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G +V+   V ++D+II+ S    +IR+ V++IR   RAT GV +   + D+ VVS+ 
Sbjct: 758 -KTGNVVSSLQVKEDDEIIICSSS-KMIRLKVSQIRPQGRATTGVRLIDLSADDTVVSMG 815

Query: 896 RIRESEIV 903
           RI E E  
Sbjct: 816 RILEGEDD 823


>gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang]
 gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang]
          Length = 873

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/904 (40%), Positives = 547/904 (60%), Gaps = 86/904 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++DNPD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT++ L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 414 ------------------FKLSDKQSQAILDMRLVRLTGLEREKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILARPERVHQIIYNELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKAQNRGGRGIQGMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                A+G  +IN+L +  GE+I T++   E     ++ Y+ F T+ G V+R  + +F  
Sbjct: 576 EYGRTAKGIPIINLLGVGAGEKIQTVINVHE--GENDDRYLFFVTQKGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L   DE+ +V   + +++IL+ T LG  V F    +R   GR++ GVRGI
Sbjct: 634 IRSNGLIALNLKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSM-GRSATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V+   I+                                              
Sbjct: 693 RLREHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  +++  N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEA 906
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++  ES+  D+ 
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQSVSQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDG 817

Query: 907 ESTE 910
              +
Sbjct: 818 SKPD 821



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++DED + ++ + S   
Sbjct: 603 NVHEGENDDRYLFFVTQKGVVKRTPVKEFANIRSNG--LIALNLKDEDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVTFKEQDVRSMGRSATGVRGI---------RLREHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++              +   +   +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITAKNG-PLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I ++    GR ++GVR I +    +V +MA V     D D+     +  S    
Sbjct: 771 VMIRFNIQSV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDGSKPDQPTSPTDA 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +  +++          +  +S+   +    + +
Sbjct: 830 SDAPTSQQPADGSYAGDADQQVSQLLDRAEADQPE 864


>gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5]
 gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5]
          Length = 833

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/907 (40%), Positives = 558/907 (61%), Gaps = 90/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNVFDKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +ID     N D  ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R +++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S
Sbjct: 242 GRGKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +L+ ++ 
Sbjct: 302 NREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLRLYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ ++DEV++IIR S N + A+ EL+ R   
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIAR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ +AI+++RL  LTGL R+ + +E   L  +
Sbjct: 419 -----------------------FDLTDVQAQAIVDMRLRALTGLEREKLESEYEELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LL +I++E+L + D+    RRT I     D+  ED I RE++V+T++
Sbjct: 456 IGELKAILADRKLLLSVIREEILIINDKYGDERRTSIGFDEFDISMEDLIPRENVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +++Q RGGKG  G+   DED++ +LFI STH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTVDTFKSQNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+INIL L   E+IT ++P  E E   +  ++  AT+ G V++  ++
Sbjct: 576 YEIPEASRTARGTAIINILQLMPDEKITAMIPIKEYE---DGKFLFMATEKGLVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   D ++ V+    E DI+L TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREDDRLIEVKITDNEEDIVLVTKYGQCIRFSEKDVRA-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D+VI+M                                             
Sbjct: 692 VRGMNLSDRDEVIAM--------------------------------------------- 706

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   ++  +   +L VS+KG GKRT+  +F   NR GKG++   +++  + G +V 
Sbjct: 707 --------QMSTQGSDLLIVSDKGMGKRTNLDEFTTQNRGGKGVKCYKITE--KTGNVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  VN++ +I++++ +G +IR+  ++I +  R T GV + + A+ + V SV ++R++   
Sbjct: 757 MKAVNEDSEIMIINTEGIIIRMQCSDISVLGRVTSGVKLINLAEGDTVASVAKVRKASAE 816

Query: 904 DEAESTE 910
            + E  E
Sbjct: 817 IDGEQVE 823


>gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 897

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/890 (43%), Positives = 559/890 (62%), Gaps = 84/890 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  E  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL DL KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++G +++  NPDI +  LME I+GPDFPT  +ILG++GI+ A+ TGRGSI 
Sbjct: 183 IPPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIILGKSGIRRAFETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTE+PYQVNKA M+EKIAEL R+K+I  I DLRDE+  R G 
Sbjct: 243 LRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A V+LN LY+ T LQ+ F VNM+AL   +P+  +L   L  ++  ++ V
Sbjct: 303 RVVIDIRKDANASVVLNNLYKQTPLQTSFGVNMIALVNGRPKLISLKDALVEYLEHQKVV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA DRAH+L GL IA+ ++DE++R+IR S N + A   L ++        
Sbjct: 363 VRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQ-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I+E  
Sbjct: 415 ------------------FKLSERQAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+   +LL I++ EL+ V++     R+T I   GL D+EDED I  E +V+T+SH  Y
Sbjct: 457 SILADEEKLLQIVRDELIDVRERYGDERKTEIQLGGLDDIEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH +VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQHRGGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L+  E I+T++   + ES  +  Y+VFAT+ G V+R+ LS+F  
Sbjct: 577 ELSRQSKGIPVVNAIELDNDESISTMIAVKDLESEED--YLVFATQKGRVKRSALSNFSH 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           IN++GKIA+     DE+++V     E DIL+ T     +RFP +A+R   GR + GV+GI
Sbjct: 635 INKNGKIAISFKQDDELIAVRLTDGETDILIGTSHASLIRFPETALRPL-GRTAAGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+V+ + +      D                                        
Sbjct: 694 TLREDDKVVGLDVTKAESDDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------ILVVTENGYGKRTPVEDYRLSNRGGKGIKTATITERN--GNVVCITSV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              + +++V++ G +IR+ V +I    RA +GV +    +++ V +V ++
Sbjct: 761 TGEEDLMVVTNSGVIIRIDVEDISQNGRAAQGVRLIKLGENQFVSTVAKV 810


>gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 832

 Score =  872 bits (2252), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/894 (42%), Positives = 548/894 (61%), Gaps = 88/894 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y 
Sbjct: 24  QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 83

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 84  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 144 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  +D LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 204 HNMVEVINGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 263

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  + DLRDESDR G R+VI
Sbjct: 264 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVI 323

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L+ ++  +E V+ RR
Sbjct: 324 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQETVITRR 383

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM              
Sbjct: 384 TRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM-------------- 429

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 430 ------------DGFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILA 477

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R ++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 478 DRMKVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIP 537

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P    Q
Sbjct: 538 LDTYRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQ 597

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N+L++   ERIT ++   E      + Y+   TKHG V++  LS+F  I ++G
Sbjct: 598 AKGTAIVNLLAVENDERITAVIQVKEFR---ADRYLFLGTKHGVVKKTPLSEFGNIRKNG 654

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R   GR + GVRGI+LA G
Sbjct: 655 LRAVNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEDGVRSM-GRVARGVRGITLADG 713

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M ++                                                   
Sbjct: 714 DEVVAMDVLRS------------------------------------------------- 724

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V +N +
Sbjct: 725 ----DSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQE 778

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE---RIRESEIV 903
           ++L++ +G +IR  V+EI + SR T+GV + + A+ +RV S+    RI +S   
Sbjct: 779 LMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMNRIVDSAGE 832


>gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
 gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC
           8290]
          Length = 850

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 551/907 (60%), Gaps = 84/907 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           +  +   +    IT+V ++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++
Sbjct: 8   NETNQGGDFPGRITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNEL 67

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K Y K ARI G+V+GKYHPHG+ A+Y+++ RMAQ +S R +L+ G GNFGSVDGD
Sbjct: 68  GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGD 127

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K A  +L D+ K+T+DF PNYDG+ +EP VL +R+PN+LVNG  GIA
Sbjct: 128 GAAAMRYTEARLSKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIA 187

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNL EV+     ++DNPD     LME++ GPDFPTG V++G++GI+ AY T
Sbjct: 188 VGMATNIPPHNLSEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVMGKSGIRKAYET 247

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI++R    IE  +  +++I+ TE+PY VNKA ++E+IAEL R+KRI  I D+ DES
Sbjct: 248 GRGSIILRAKVEIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDES 307

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G RVVI+++R ASA+VILN LY+ T +Q+ FS NM+A+    P   +L  IL+ ++ 
Sbjct: 308 DREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKGTPRILSLKEILQYYLE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+ RRTKY L KA+ RAH+L GL IA+ ++DE+++IIR S   E A+ +L+     
Sbjct: 368 HQVEVITRRTKYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLIT---- 423

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q +AIL++RL RLTGL R+ I  E N L  +
Sbjct: 424 ----------------------GFGLSDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKD 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-V 542
           I++   ILSSR R+  II +ELL ++ +    RRT ++ G +   +++ ++ E+ V+  +
Sbjct: 462 IEDFKAILSSRDRVNQIIYEELLEIQKKFGDERRTELLVGEVLSLEDEDLIEEEDVIVSL 521

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR+P + ++AQ RGG+G  G+ + D+DFV  L   STH  +LFF+  G VY+ K
Sbjct: 522 THNGYIKRLPTTEFKAQNRGGRGVQGMGVHDDDFVEQLVSTSTHDVLLFFTDAGKVYRMK 581

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     A+G  ++N+L++N GE+I  ++   + ++      ++F T +G V+R  +
Sbjct: 582 GYEIPEYGRSAKGIPIVNLLNINSGEKIEAVINVSDRKNDVQ-KDLLFVTLYGTVKRTPV 640

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF  I  +G IA+ L   D++++     Q  ++++ T LG  + F  S +R   GR++ 
Sbjct: 641 SDFANIRSNGLIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSFNASDVRSM-GRSAT 699

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L + D V+   ++                                         
Sbjct: 700 GVRGIRLRENDYVVGADVL----------------------------------------- 718

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +  +  +SEKGFGKRT + D+ I  R GKG++  ++++ N  G L 
Sbjct: 719 ------------NPDSEVFIISEKGFGKRTPAADYPIKGRGGKGVKTANITEKN--GPLS 764

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  V+ N+ I+L++DKG +IR  + ++    R+T GV +    +D +V ++ ++ + E 
Sbjct: 765 GLTTVSGNEDIMLITDKGVMIRFGIEDVSQTGRSTLGVHLIRIDEDSKVSTMAKVEKQED 824

Query: 903 VDEAEST 909
              ++++
Sbjct: 825 EASSDAS 831



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 15/232 (6%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  G VKR P+S +   R  G     + +++ D + +  I+  + +V+  + LG+    
Sbjct: 629 VTLYGTVKRTPVSDFANIRSNG--LIAIHLKEGDQLINALIIDQNQNVIIGTHLGYAMSF 686

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +      A G   I         R+         +    +  V   ++ G  +R  
Sbjct: 687 NASDVRSMGRSATGVRGI---------RLRENDYVVGADVLNPDSEVFIISEKGFGKRTP 737

Query: 662 LSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            +D+    +  +  K A   +    +  + T +   DI+L T  G  +RF I  +    G
Sbjct: 738 AADYPIKGRGGKGVKTANITEKNGPLSGLTTVSGNEDIMLITDKGVMIRFGIEDV-SQTG 796

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           R+++GV  I + +  +V +MA V   + +          MS+          
Sbjct: 797 RSTLGVHLIRIDEDSKVSTMAKVEKQEDEASSDASKGNLMSSNGDTSEDSDS 848


>gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K]
 gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K]
          Length = 906

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/915 (42%), Positives = 540/915 (59%), Gaps = 102/915 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL+K
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEK 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ K+TVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT   I GR GI+ AY  GRG+I +R  + +E
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 327 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 481 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600

Query: 617 ALINILSLNQGERITTIMPFPEDESSWN------------------------NLYVVFAT 652
            ++N++ L  GE++  I+P                                   +V   T
Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADDAAEAEGAEAEKADEATPPGTPAFVFMVT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G IA+ ++  DE+++       + ILL+T  G  +RF  S 
Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+GI+L  GD+V+                                    
Sbjct: 721 VRPM-GRTAYGVKGITLEAGDEVV------------------------------------ 743

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        +         +   +LTV+  G+GKRT   ++R+  R GKG+     
Sbjct: 744 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV + +   K+E+V
Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850

Query: 892 VSVERIRESEIVDEA 906
           V V R+ E+    E 
Sbjct: 851 VGVARVAETTPEAEE 865


>gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 824

 Score =  871 bits (2251), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/900 (40%), Positives = 549/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 9   QDKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+ G  P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQGGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +  +KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL  D I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLEHDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+L II++EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVLTIIREELDEVKRKFADERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQDEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D     + Y+ F T+ G V+R  ++DF  I +
Sbjct: 583 RTAKGLPIVNLLKLDEGETIQTIINVEQD--HSQDSYLFFTTRLGVVKRTSVADFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   +V                                                 
Sbjct: 700 DGDQVVGAGVVS------------------------------------------------ 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L ++EKG+GKRT + ++    R GKGI+  ++++ N  G L  +  VN  
Sbjct: 712 -----DNDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKN--GPLAGLMTVNGQ 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  +  +  E
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVEADDKEELQDEKE 824


>gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
 gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145]
          Length = 859

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/897 (42%), Positives = 553/897 (61%), Gaps = 84/897 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   +  E  E  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEETDNQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ GEV+GKYHPHG++++YD + RMAQ WSLR +LI+GQGNFGS+
Sbjct: 61  QGLGLQSNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL+K A  +L D+ KDTVDFR N+D S +EP VL AR PN+LVNG  
Sbjct: 121 DGDGAAAMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNI  HNL EV+D  +A ID+ +I +  LM+ ++ PDFPTG +I G  G++ A
Sbjct: 181 GIAVGMATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIYGYEGVREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE  S +RE+I+VTEIPYQVNKA M+E+ AELV EK+I  I+++R
Sbjct: 241 FETGRGRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V E+KR A+A ++LN LY+YT+LQ+ FSVN +AL   +P    L  ++  
Sbjct: 301 DESDRDGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGRPMLLNLKDMIVH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVVVRRTK+ L +A  RAH+L GL IA+ +LDEV+ +IR S  P+ AR  LM +
Sbjct: 361 FVDHRHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I+ E   L
Sbjct: 421 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKEEYADL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I+    +L+  S  + IIK+EL+ VK+     RRT IV    ++  ED I  E++V+
Sbjct: 455 MKQIEYLKSVLADESLRMSIIKEELVEVKEAYGDERRTEIVHSAAELMTEDFIEDENVVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR PL+ YR Q RGGKG  G   RDEDF+  +F+ S H  +LFF+  G  Y 
Sbjct: 515 TISHEGYIKRTPLTEYRTQGRGGKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P GS  ++G+A+ NI+++++ E+I   +      D+    N +++  TK G ++
Sbjct: 575 LRVFEIPEGSRTSKGRAIQNIINIDKEEKIKAYIKVVNLKDQEYLENNFIIMCTKKGTIK 634

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  DE+L     T  ++I++  + G+ +RF  S +R   G
Sbjct: 635 KTTLEAYSRPRSNGINAININEGDELLEASLTTGNSEIVMALRSGRAIRFNESTVRPM-G 693

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRGISLA   D+V+ M  +                                    
Sbjct: 694 RTATGVRGISLAHDKDEVVGMISIDSP--------------------------------- 720

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              E  +L VSEKG+GKRT   D+R++NR GKG++  +++  ++
Sbjct: 721 -------------------ESTVLVVSEKGYGKRTDIEDYRVTNRGGKGVKTINIT--DK 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            G LVA+  V DND +++++  G +IR+ ++ +R+  RAT+GV + +  + + + SV
Sbjct: 760 TGQLVAIKSVTDNDDLMIINRSGIVIRIAMDTLRVMGRATQGVRLITLKESDEIASV 816


>gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
 gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19]
          Length = 870

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 560/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR
Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV  GR + GV+G+
Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L +   D+V+ M  +   +                                        
Sbjct: 695 TLDEDNTDEVVGMICIKDKEK--------------------------------------- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 716 ------------ETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++      +
Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821

Query: 905 EAE 907
            AE
Sbjct: 822 IAE 824



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 104/260 (40%), Gaps = 12/260 (4%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +K+  L  Y   R+ G   + + +R++D +  + + + +  V+  +  G   + 
Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               + +    A G   +  L  +  + +  ++   +         V+  ++ G  +R+ 
Sbjct: 677 HESAVRVMGRTASGVKGMT-LDEDNTDEVVGMICIKD----KEKETVLVVSEQGYGKRSS 731

Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + D+        G   + +  +  ++++++  T END+++  K G  +R  ++ + V  G
Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVI-G 790

Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVR I+L K  D++ S+  VL    +        +    +         + +   +
Sbjct: 791 RATQGVRLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGRELSENQASLGTD 850

Query: 778 DSSVEGNISEERCQELKLKE 797
               E     E+    ++ E
Sbjct: 851 VDLPESEEDNEQNDNEEITE 870


>gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
 gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB]
          Length = 813

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/884 (42%), Positives = 547/884 (61%), Gaps = 87/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +++I DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRI + M ++  ++NK Y K 
Sbjct: 2   DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+YDAL RMAQD+S+R  L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +  H  + D+ K+T+ F+PNYD +  EPVVL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+  G +A++D+PDI +  LM  I GPDFPT   I G  GIK+AY TGRG+I +R   
Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGCVGIKDAYETGRGTIKMRARV 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E++   R  +++TE+PYQVNKA +LE+IAELV++K+I  I D+RDESDR+G RVV+ L
Sbjct: 242 EVEESGR-RNHLIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLTL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++G    VI NQLY++T+L+S F V M+A+   KPE   L G+L  F+ FR  V++RRT+
Sbjct: 301 RQGDEPRVIENQLYKHTALESSFGVIMLAVVDNKPEVLNLKGVLNNFLDFRRLVIIRRTQ 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A  RAH+L GL  A+ +LDEV+ +IR +  P  A++ LM+R              
Sbjct: 361 YELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMER-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S+VQ +AILE+RL RLTGL R+ I  E   +  EI+    ILSS 
Sbjct: 407 ------------FEFSDVQAQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSA 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +  +I++E+  + D+    R+T I+    ++  ED I  E+MVVT+S  GY+KR PLS
Sbjct: 455 ALVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPLS 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VYR+QRRGGKGR+G+  R+ED VT LF  STH  +L F++ G VY  KV+ +P   P A 
Sbjct: 515 VYRSQRRGGKGRTGMSTREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSAL 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L + + ERI T++P  E +      + V AT++G +++  LS +     +G  
Sbjct: 575 GKAIVNLLPVQKDERIQTVLPVKEFK---EGFFAVMATRNGVIKKTDLSAYSNPRSTGIR 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE++SV      +D+ L ++ G+ +R      R   GR S GVRG+ L  G +
Sbjct: 632 AIVLDDDDELISVCVTDGSHDLFLMSRAGKSIRVNEREFRPL-GRVSRGVRGMKL-DGSR 689

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ M ++    A                                                
Sbjct: 690 MVGMDVIEEGKA------------------------------------------------ 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                IL ++EKGFGKRT++ ++R  +R GKG+    V++ N  G++V    V +++QI+
Sbjct: 702 -----ILVITEKGFGKRTNAEEYRCQSRGGKGVLNIRVTERN--GSVVGFRQVGEDEQIL 754

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +++D G LIR+PV +I    R T+GV + +  + E+VV V  + 
Sbjct: 755 MITDHGRLIRMPVAQISRIGRVTQGVKLMNLNEGEKVVDVAVLP 798



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 83/208 (39%), Gaps = 18/208 (8%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754
           K G   RF  S ++      +  +  + L      + +++I     ++       + +  
Sbjct: 400 KQGLMERFEFSDVQ------AQAILEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSS 453

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
              +    R    +  +       + +     E   ++L   E+ ++T+S  G+ KRT  
Sbjct: 454 AALVDQVIREEIKELTDQYGDLRKTEILAEAGELCIEDLIAAEEMVVTISRAGYIKRTPL 513

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG       + +    + ++F  + +D +++ +++G +  + V EI    
Sbjct: 514 SVYRSQRRGGKGRTGMSTREEDL---VTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVG 570

Query: 875 RATKGVVIFST---AKDERVVSVERIRE 899
            +  G  I +     KDER+ +V  ++E
Sbjct: 571 PSALGKAIVNLLPVQKDERIQTVLPVKE 598


>gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503]
 gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7]
 gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
 gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503]
 gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13]
 gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B]
          Length = 870

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 560/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR
Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV  GR + GV+G+
Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L +   D+V+ M  +   +                                        
Sbjct: 695 TLDEDNTDEVVGMICIKDKEK--------------------------------------- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 716 ------------ETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++      +
Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821

Query: 905 EAE 907
            AE
Sbjct: 822 IAE 824



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 104/260 (40%), Gaps = 12/260 (4%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +K+  L  Y   R+ G   + + +R++D +  + + + +  V+  +  G   + 
Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               + +    A G   +  L  +  + +  ++   +         V+  ++ G  +R+ 
Sbjct: 677 HESAVRVMGRTASGVKGMT-LDEDNTDEVVGMICIKD----KEKETVLVVSEQGYGKRSS 731

Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + D+        G   + +  +  ++++++  T END+++  K G  +R  ++ + V  G
Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVI-G 790

Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVR I+L K  D++ S+  VL    +        +    +         + +   +
Sbjct: 791 RATQGVRLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGREFSENQASLGTD 850

Query: 778 DSSVEGNISEERCQELKLKE 797
               E     E+    ++ E
Sbjct: 851 VDLPESEEDNEQNDNEEITE 870


>gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
 gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3]
          Length = 870

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/903 (40%), Positives = 560/903 (62%), Gaps = 88/903 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNGG GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   DI+++ LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIE-VENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P    L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRLLNLKDLIKAFVEHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P+ A   L++R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSELQARAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLNEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK ELL +KD+    R+T IV    ++  ED    ++M++TVSH+GY+KR
Sbjct: 456 LENEDLCMKVIKDELLEIKDKFGDERKTDIVYASEELNPEDFYADDEMIITVSHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++LFF++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             A+G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNAKGRAIQNLLNIEPDDKVQAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++++  + G+ +RF  SA+RV  GR + GV+G+
Sbjct: 636 PRQNGVNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRFHESAVRVM-GRTASGVKGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L +   D+V+ M  +   +                                        
Sbjct: 695 TLDEDNTDEVVGMICIKDKEK--------------------------------------- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + +L VSE+G+GKR+S  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 716 ------------ETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V D + +++++  G  IR+ V ++ +  RAT+GV + +  K ++ + SV ++      +
Sbjct: 762 NVTDENDLMIINKSGIAIRMKVADLNVIGRATQGVRLINLEKRNDEIASVCKVLSESEEE 821

Query: 905 EAE 907
            AE
Sbjct: 822 IAE 824



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 104/260 (40%), Gaps = 12/260 (4%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +K+  L  Y   R+ G   + + +R++D +  + + + +  V+  +  G   + 
Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIQVCMTNGNNEVIIANRNGRAIRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               + +    A G   +  L  +  + +  ++   +         V+  ++ G  +R+ 
Sbjct: 677 HESAVRVMGRTASGVKGMT-LDEDNTDEVVGMICIKD----KEKETVLVVSEQGYGKRSS 731

Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + D+        G   + +  +  ++++++  T END+++  K G  +R  ++ + V  G
Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTDENDLMIINKSGIAIRMKVADLNVI-G 790

Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVR I+L K  D++ S+  VL    +        +    +         + +   +
Sbjct: 791 RATQGVRLINLEKRNDEIASVCKVLSESEEEIAEQKAEQEARQENEGRELSENQASLGTD 850

Query: 778 DSSVEGNISEERCQELKLKE 797
               E  +  E     ++ E
Sbjct: 851 VDLPESEMDNELDNNEEITE 870


>gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
 gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266]
          Length = 827

 Score =  871 bits (2250), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/898 (40%), Positives = 533/898 (59%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ A+YD+L R+ QD+S+R  LI+GQGNFGS+DGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG +A+I+NPDI++  LM+ +  PDFPT  +I G  G+K AY TGRG +VIR
Sbjct: 182 PQNLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIYGYEGVKQAYLTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGMPRVLNLKQMMEYYIRHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  LM++          
Sbjct: 362 RRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q++AILE+RL RLTG+ R  I  E     + I E   I
Sbjct: 412 ----------------FGLTEIQSKAILEMRLQRLTGMERKKIDMEYQETLLLIDELRSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  + + II++ELL VKD     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LANPQKQMQIIREELLKVKDVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DFV  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVAGAQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L   E+I   +     +      ++V AT +G V++  L +F +  R
Sbjct: 576 RTARGRSLANIMELQPAEKIRAYINIRNFD---EPGFIVMATGNGTVKKTGLDEFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       ++ I+L    G  VRFP S IR   GR ++GVRGI+L 
Sbjct: 633 NGIAAITIEENDELIDARLTDGDHQIILAKSSGYVVRFPESEIRSM-GRTAMGVRGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             ++ ISM      D                                             
Sbjct: 692 ADEKCISMVTTKRFDTT------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  + GA+V +  VND 
Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTKRGARGVITLKAHE--KTGAMVGLLDVNDE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I++++ G + R  V++IR+  R T GV +      + + ++ R+ +S+   + +S
Sbjct: 758 DDLIIITNNGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDIISALARVPKSDEEIDPDS 815



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 15/230 (6%)

Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            E   + + +  G VK+  L  +   RR G     +   DE     L        ++   
Sbjct: 605 DEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELIDARL--TDGDHQIILAK 662

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G+V +     +      A G   +  ++L+  E+  +++          +  ++  T 
Sbjct: 663 SSGYVVRFPESEIRSMGRTAMG---VRGITLDADEKCISMVTTKRF-----DTTLLAVTD 714

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R+++ D+    R  +  + L + ++   ++ +     E+D+++ T  G   R  +
Sbjct: 715 NGFGKRSRVEDYRLTKRGARGVITLKAHEKTGAMVGLLDVNDEDDLIIITNNGIVNRQHV 774

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           S IR   GRN+ GVR I L  GD + ++A V  +D + D           
Sbjct: 775 SDIR-LTGRNTSGVRLIRLMAGDIISALARVPKSDEEIDPDSLPENPDGQ 823


>gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
 gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200]
          Length = 833

 Score =  871 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTSVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
 gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745]
          Length = 836

 Score =  871 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/897 (42%), Positives = 534/897 (59%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I  EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+    ++ K A
Sbjct: 6   VRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+  YHPH ++A+YDAL RM Q +SLR  L+EGQGNFGSVDGD  AA RYTE +L
Sbjct: 66  GIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAKL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  +L D+ K+TVDF+PNYDG  QEPVVL A+ PN+LVNG  GIAVGMATNIP HNL
Sbjct: 126 AAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV DG + +IDNP+   D L+E+I+GPDFPTG VILGR GI+ AYATG+G +VIR  +H
Sbjct: 186 AEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVILGREGIRAAYATGKGRVVIRARTH 245

Query: 256 IEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE+       QI+VTE+PYQVNKAA+LEKIAELV+  RI  I DLRDESDR G R+VIEL
Sbjct: 246 IEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVIEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRT 373
           KR A    +LN L+++T LQ  F VNM+AL     P   TL  +L+ ++  R+EVV RRT
Sbjct: 306 KRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR RAH+L GL IA+ +LDEV++ IR S   E+AR  L+ R             
Sbjct: 366 EHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINR------------- 412

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +EVQ  AIL+++L RL  L R  I NE   L  EI    ++L+ 
Sbjct: 413 -------------FGFTEVQANAILDMQLRRLAALERHKIENEYRDLLKEIAGLEELLAD 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++L +I++EL+ ++D+    RRT I +   ++ DED I    ++V +++ GYVKR+  
Sbjct: 460 PAKILAVIREELVQLRDKFGDERRTLIQDVSGEITDEDLIPDVSVLVMITNRGYVKRIAD 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGG+G +G+ +R+ED V  +    TH S+LFF+  G V++ KVW LP     A
Sbjct: 520 GTYRQQHRGGRGVTGMTLREEDGVHRIVAARTHDSLLFFTDRGRVFQLKVWELPDSGRTA 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  +IN++ +  GE IT ++P  +     +  Y+   T++G V+R +L  F  +  SG 
Sbjct: 580 RGIPVINLIGIEPGETITALLPVRDFA---SARYLFMCTRNGRVKRTRLDQFASVRSSGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L+  DE+  V   +  ++++L T+ GQ +RF  + +R   GR + GV GI +  GD
Sbjct: 637 IAIGLEEGDELAWVRLTSGNDELILVTEQGQAIRFKETDVRPM-GRPAAGVIGIRMEPGD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI+                                                      E+
Sbjct: 696 RVIA-----------------------------------------------------AEV 702

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +Q +L VS  G+GKRT+  +FR+  R G+G+ A  +++ N  G + A   V D D I
Sbjct: 703 VQPDQDLLVVSANGYGKRTALSEFRVQGRGGQGVTAMKITERN--GPVAAARVVTDTDSI 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +LVS +G +IRVP  +I    R T+GV I    + ++V SV  IR  E  + A+  E
Sbjct: 761 MLVSLRGMVIRVPAEQISRIGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEE 817



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 15/237 (6%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
              +  G VKR  L  + + R  G    G+   DE     L   S +  ++  +  G   
Sbjct: 612 FMCTRNGRVKRTRLDQFASVRSSGLIAIGLEEGDELAWVRL--TSGNDELILVTEQGQAI 669

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K   +    P  R  A +  + +  G+R+              +  ++  + +G  +R
Sbjct: 670 RFKETDVR---PMGRPAAGVIGIRMEPGDRVIAAEVVQ------PDQDLLVVSANGYGKR 720

Query: 660 NKLSDFIQINR--SGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVF 716
             LS+F    R   G  AMK+  R+  ++     T  + I+L +  G  +R P   I   
Sbjct: 721 TALSEFRVQGRGGQGVTAMKITERNGPVAAARVVTDTDSIMLVSLRGMVIRVPAEQI-SR 779

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            GR + GV  + L + DQV S+ ++   +      +      +++    + D     
Sbjct: 780 IGRMTQGVSIMRLQEQDQVASVTVIRTPEDAEMADLEEASADTSETAGAARDEAAGE 836


>gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
 gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313]
          Length = 858

 Score =  871 bits (2249), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/907 (40%), Positives = 548/907 (60%), Gaps = 86/907 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ +E+    I S  + ++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV
Sbjct: 1   MAEEEQTNSRIKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K++ K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGDP 
Sbjct: 61  TPDKQHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGEV+ G   ++ NPD+    LME I GPDFPTGA+++G++GI+ AY TG+
Sbjct: 181 MATNIPPHNLGEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  + IE     +E I+VTE+PY VNKA ++E+IAEL R+KRI  I  + DESD+
Sbjct: 241 GVVTVRAKTEIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+ IE++R  SA V+LN LY+ T +Q+ FS NM+A+   +P+  +L  +L A++  +
Sbjct: 301 EGNRIAIEIRRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGRPKLLSLKDMLVAYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRT++ L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+++LM       
Sbjct: 361 QKVVRRRTEFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLM------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q++AIL++RL RLTGL RD I  E   L   I 
Sbjct: 414 -------------------VDYALSDKQSQAILDMRLVRLTGLERDKIEKEYQGLLTAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL V+ +    RRT +    +  +EDED I  ED++V+++H
Sbjct: 455 DFQDILAKPERIDEIIYTELLEVQSKYGDERRTELQIGDVTSIEDEDLIEEEDIIVSLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+  S +RAQ RGG+G  G+ + D+DF+ +L   STH ++LFF++ G VYK K +
Sbjct: 515 AGYIKRMLQSEFRAQNRGGRGIQGMGVNDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L +  GE I T++    D S  ++ Y+ F T+ G V+R  +++
Sbjct: 575 EVPEYGRTAKGIPVVNLLGIESGESIQTVINVRGDASESSD-YLFFTTRQGVVKRTPVNE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I   G  A+ L   DE+++V     + +I++ T  G  V F   A+R   GR++ GV
Sbjct: 634 FGNIRAHGLKAINLHDGDELINVLVTDGDQNIIIGTHGGYAVSFNSEAVRSM-GRSAAGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   +++                                          
Sbjct: 693 RGITLRPDDYVVGAQVLID----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L ++EKG+GK+T    + I  R GKGI+   V++ N  G L  +
Sbjct: 712 ------------NGHVLIITEKGYGKQTPVDQYPIKGRGGKGIKTAQVTEKN--GPLAGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEI 902
             V+ ++ I+L ++KG +IR  V+ I    RAT+GV +     D  V +  ++    +E 
Sbjct: 758 KVVDGSEDIMLTTNKGVMIRFTVDSISETGRATQGVRVIRLDDDSAVATFAKVEHVVAEE 817

Query: 903 VDEAEST 909
           VD+ ++ 
Sbjct: 818 VDDEDTD 824



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 17/276 (6%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +      +     D     D +   +  G VKR P++ +   R  G     + + D D +
Sbjct: 596 SGESIQTVINVRGDASESSDYLFFTTRQGVVKRTPVNEFGNIRAHG--LKAINLHDGDEL 653

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            ++ +     +++  +  G+        +      A G   I +   +       ++   
Sbjct: 654 INVLVTDGDQNIIIGTHGGYAVSFNSEAVRSMGRSAAGVRGITLRPDDYVVGAQVLI--- 710

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQE 693
                 +N +V+  T+ G  ++  +  +  I   G   +K     E    +  ++     
Sbjct: 711 ------DNGHVLIITEKGYGKQTPVDQYP-IKGRGGKGIKTAQVTEKNGPLAGLKVVDGS 763

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            DI+LTT  G  +RF + +I    GR + GVR I L     V + A V H  A+  +   
Sbjct: 764 EDIMLTTNKGVMIRFTVDSISE-TGRATQGVRVIRLDDDSAVATFAKVEHVVAEEVDDED 822

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                ++     +    E  +   +        ++ 
Sbjct: 823 TDLSEASSDLPTAPTEGEQPAEVTELLHRAENDDQE 858


>gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
 gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           infantis ATCC 700779]
          Length = 822

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/905 (40%), Positives = 560/905 (61%), Gaps = 90/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   + A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK + +  RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKYEDKRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+ G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINIESERS--DDAYIFFTTRAGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TKLG  VRF  S++R  + R++ GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMS-RSATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+   ++                                                 
Sbjct: 693 EGDAVVGARVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R+GKG++  +++  N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANITDKN--GHLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-----E 905
           + +++++D G +IR  V  I    R+T GV +    ++ ++V+   +  +E  +     E
Sbjct: 758 EDLMVITDTGVMIRTNVANISQTGRSTMGVKVMRLDENAKIVTFTTVAAAEKEEVGADNE 817

Query: 906 AESTE 910
            ES E
Sbjct: 818 TESEE 822


>gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 838

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis]
 gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583]
 gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322]
 gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8]
 gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98]
 gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1]
 gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76]
 gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411]
 gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109]
 gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860]
 gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134]
 gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855]
 gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248]
 gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102]
 gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470]
 gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137]
 gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000]
 gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017]
 gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027]
 gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141]
 gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244]
 gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031]
 gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043]
 gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312]
 gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342]
 gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346]
 gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B]
 gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A]
 gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62]
          Length = 833

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341]
          Length = 833

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSTEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
 gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126]
          Length = 822

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/900 (41%), Positives = 552/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+  LDEV+ IIR S     A+ +LM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 EKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S  N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-ENNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  ++++ N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITEKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+   +E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDSARIVTFALVEPEEVEQASEDQE 818


>gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK72]
          Length = 826

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+I+VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADNRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823


>gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 907

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/915 (42%), Positives = 540/915 (59%), Gaps = 102/915 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+  NK+Y KCA +
Sbjct: 28  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGV 87

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL++
Sbjct: 88  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 147

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ K+TVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 148 LSDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 207

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT   I GR GI+ AY  GRG+I +R  + +E
Sbjct: 208 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGFIHGRDGIRAAYEKGRGTIQVRARTVVE 267

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 328 DAMAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRILTLKEMLERFVAHRRDVVTRRTRYE 387

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 388 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 431

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 432 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 481

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 482 LMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 541

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 542 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601

Query: 617 ALINILSLNQGERITTIMPFPEDESSWN------------------------NLYVVFAT 652
            ++N++ L  GE++  I+P                                   +V   T
Sbjct: 602 PIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAEGEGAEVEKAEEATPPGTPAFVFMVT 661

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G IA+ ++  DE+++       + ILL+T  G  +RF  S 
Sbjct: 662 RKGLIKKTRLEQFARPRAAGIIALGIEEGDELIAARLTDDRSHILLSTARGMAIRFEESD 721

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+GI+L  GD+V+                                    
Sbjct: 722 VRPM-GRTAYGVKGITLEAGDEVV------------------------------------ 744

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        +         +   +LTV+  G+GKRT   ++R+  R GKG+     
Sbjct: 745 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 793

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV + +   K+E+V
Sbjct: 794 TERN--GPVVAAAPVGDAEEVMLITNGGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 851

Query: 892 VSVERIRESEIVDEA 906
           V V R+ E+    E 
Sbjct: 852 VGVARVAETTPEAEE 866



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 16/245 (6%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DEI+ +    ++ D     +     RF +S ++  A       R   L +   +
Sbjct: 403 IALDHIDEIIELIKKAKDRD---AARDEMMARFALSELQAKAILEMQLQRLTGLERQKIL 459

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
             +A V        E +   K +         + +++ + +  + ++G  S+   ++L  
Sbjct: 460 DELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADERRTEIQGEASDLSTEDLIA 519

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E+ ++TVS  G+ KR     +R   R G+G         + + +L   F  + +  +++
Sbjct: 520 EEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATRDEDFLESL---FVASTHSYLLV 576

Query: 856 VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVS---VERIRES----EIVDE 905
            SDKG +  + V+EI  A R  KG   V +   A  E+V +   V R+ E     +   E
Sbjct: 577 FSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAAILPVRRLPEPPGAADEAAE 636

Query: 906 AESTE 910
            E  E
Sbjct: 637 GEGAE 641


>gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK115]
          Length = 826

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 550/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
 gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185]
          Length = 809

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/883 (41%), Positives = 528/883 (59%), Gaps = 85/883 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+   K Y 
Sbjct: 5   EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF PNYD S +EP VL A++P +L NG  GIAVGMATNIP 
Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG + +ID PD  ++ LM +I+GPDFPT  +ILG  GI+ AY TGRG I +R 
Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGTEGIRQAYTTGRGVIKLRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             HIE TS  R +I+VTE+PYQVNKA ++EKIAELVR+K I  I  L DESDR G R+VI
Sbjct: 245 RVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +++R A+A+VILNQLY++T LQ  F V M+AL    P   TL  +L  ++  +++V+ RR
Sbjct: 305 DVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGSPRVLTLKEVLHYYIKHQQDVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM+             
Sbjct: 365 TKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLME------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+LRL RLTGL R+ I  E   +   I     +L+
Sbjct: 412 -------------DFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              ++  IIK ELL+V+++    RRT I     ++  ED I +ED+V+T++H  Y+KR+P
Sbjct: 459 DEGKIDKIIKDELLAVREKYGDERRTEITIDTSEINVEDLIAQEDVVITLTHNNYIKRMP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR Q+RGG G +G+  ++ DFV ++ + +TH ++LFF++ G VY  K + +   S Q
Sbjct: 519 LDTYRRQKRGGVGVTGMGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQ 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L L   E+IT ++   E        Y+  ATK G V++  LS+F  I R G
Sbjct: 579 AKGTAIINLLQLESEEKITAVIQVKEFL---PERYLFMATKKGIVKKTSLSEFQSIRRGG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  D+++ V+    E  ++L T  G  V F    +R   GR + GV+GI+L  G
Sbjct: 636 LNAINLDEDDDLIGVKFTDGEKHVILGTAGGMAVAFAEDDVRSM-GRTARGVKGINLKAG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M                                                     +
Sbjct: 695 DVVVGM-----------------------------------------------------D 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +   +LT++ +G+GKRT++ ++R+  R GKG+    V++  + GA++ +  V    +
Sbjct: 702 NLARNAEVLTITAEGYGKRTATSEYRLQTRGGKGLINMKVTE--KTGAVIGLKVVRPGQE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +IL++  G +IR  V+EI + SR T+GV +    + ++  S  
Sbjct: 760 LILITTDGIVIRTKVDEISVISRNTQGVKVVRLGEGDKAASFA 802


>gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
 gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501]
          Length = 859

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/896 (41%), Positives = 543/896 (60%), Gaps = 62/896 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  + + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP++    L++II GPDFPTG  ILGR+GI +AY +GRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQILGRSGIHDAYLSGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++T++PYQ NKAA++E+IA+LV +KRI  I+D+RDESDR 
Sbjct: 244 RGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L+ F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  TA++EL+++      
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L ++I +
Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II++EL  +K    TPRRT IV    ++ D D I  E  ++ ++  G
Sbjct: 458 LKDILARRERIEAIIEEELAQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++   ++++D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S  ARG  ++ +L + + E+IT+I+   E     +++++V  T++G +++  LS F 
Sbjct: 578 QAASRTARGIPIVQMLPIPKDEKITSIVAVSEFS---DDVFLVMLTRNGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D++  V    +E+ I+L T  G  + F      +R   GR + GV
Sbjct: 635 NIRTNGLIAISLGDGDQLRWVRLTREEDSIILGTSNGMSIHFQADNQQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD++ISM I+                        +  T  +   + D  +  N
Sbjct: 694 KAMKLKKGDELISMDIL-----------------------TAQVTAGMAYTEEDEEILDN 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +EE  +E      +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++
Sbjct: 731 ENEELTEEETTAGPWILAITNGGYGKRVPISQFRLQKRAGMGVRAIKF--KSDSDCLASL 788

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             VN  D++++VS++G +IR  V+ I + SRA  GV +     ++ + +V  +  +
Sbjct: 789 RVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSEDAIAAVALVPPA 844


>gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
 gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22]
          Length = 816

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1]
          Length = 826

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
          Length = 833

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 543/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L I I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLIFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 809

 Score =  870 bits (2248), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/894 (40%), Positives = 559/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+ I +   D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +        Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +RV  GR++ GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D+D+I++ S +G  IR+ V+++ +  R T+GV +        +V S+ RI+  E
Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDTGNIKVSSIARIKAEE 809


>gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
 gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787]
          Length = 814

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/898 (41%), Positives = 548/898 (61%), Gaps = 90/898 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ K+TVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V      + +N +  ++ +++II+GPDFPTGA+ILG  GI+ AY T
Sbjct: 182 NIPPHNLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+VILNQLY++T LQ  F V M+AL   +P+   ++ +L  ++ 
Sbjct: 302 NREGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLNYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+  L++    
Sbjct: 362 HQEEVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIE---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+EVQ +AI+++RL  LTGL R+ +  E   L   
Sbjct: 418 ----------------------AFELTEVQAQAIVDMRLRALTGLEREKLETEYAELMKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E+L +  +    RRT I     D+  ED I R+D+V+T++
Sbjct: 456 IGELKAILADRKLLLGVIKEEILIIDGKYSDERRTSIGFDEFDISMEDLIPRQDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +++Q RGGKG  G+   DED+V +LF+ STH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+IN+L L   E+IT ++P  E +      Y+  ATK G V++  ++
Sbjct: 576 YEIPEASRTARGTAIINLLQLMPDEKITAMIPIDEYK---EGQYLFMATKKGLVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+   Q+ DI+L TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREEDELIEVKFTDQDQDIILVTKYGQCIRFNEKDVRA-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++LA  D+V+ M                                             
Sbjct: 692 VRGMNLADRDEVVGM--------------------------------------------- 706

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L  +   +L VSEKG GKRT+  +F   NR GKG++   +++  + G +V 
Sbjct: 707 --------QLHTQGTHLLIVSEKGMGKRTAMEEFTSQNRGGKGVKCYKITE--KTGNVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V  VN++++I++++ +G +IR+  N I +  R T GV + +   +  V S+ ++RE+E
Sbjct: 757 VKAVNEDNEIMIINTEGIVIRMECNSISVLGRITSGVKLINLNDNATVASIAKVRETE 814


>gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1058]
          Length = 826

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 550/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDVSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK678]
          Length = 826

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEIKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 809

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/893 (40%), Positives = 560/893 (62%), Gaps = 88/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EEFDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  +++V+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLLDMLNYYIEHQKDVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L++R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FGFTEVQAQAILDMRLQRLTGLERQKIEEELAELLKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYV 548
           +L++ + +  IIK+E+L +K++    RRT+I++   +  +E+ +++E D V+T++H GY+
Sbjct: 456 VLANEAMVKEIIKKEILEIKEKYKDERRTKIIQDEQEDFEEEELIQEQDTVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGGKG +G+  R+EDFV ++F+ +TH  +LFF+  G  Y+ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGKGITGISTREEDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G A++N++ + + E+IT  M   +        +++  TK+G +++  LS+F   
Sbjct: 576 ASRQAKGTAIVNLIQIGKDEKITACMTVKDF----KEGFLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV  GR++ GV+G++
Sbjct: 632 TKAGKKAITLAEDDCLIDVKLTSGNDEMVLVSSGGYCVVFNENDVRVM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+ M                                                  
Sbjct: 691 LEDGDFVVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V++  + G +V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSDIEEYRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRES 900
           D D+I+L S +G  IR+ ++++ +  R T+GV +     D  +V S+ RI+  
Sbjct: 756 DEDEIMLCSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDSDSIKVSSIARIKAE 808


>gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
 gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814]
          Length = 837

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/912 (40%), Positives = 560/912 (61%), Gaps = 95/912 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRI++ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ K+TVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTG +ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +I+V+E+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G RVVIEL+R A+A+VILNQLY++T LQ  F V M+AL G +P+   L+ +L  ++ 
Sbjct: 302 SREGMRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLALVGNEPKVMNLMEMLNYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S   + A+ ELM+R   
Sbjct: 362 HQEEVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ++AI+++RL  LTGL R+ +  E  +L  +
Sbjct: 419 -----------------------FGLTDVQSQAIVDMRLRALTGLEREKLEAEYKALMEQ 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+    IL+ R  LLG+IK+E+L ++D+    RRT I     D+  ED I RED+V+T++
Sbjct: 456 IEHLRAILADRKLLLGVIKEEILVIRDKYGDERRTSIGFDEFDISMEDLIPREDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    ++AQ RGGKG  G+   DED+V +LF+ +TH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSHDTFKAQNRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG A++N+L L  GE+I+ ++P  +     ++ Y++ ATK G +++  + 
Sbjct: 576 YEIPEASRTSRGTAIVNLLQLMPGEKISAVIPIEKYN---DDEYLLMATKKGLIKKTPIK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+    ++D+ + TK GQC+RF  S +R   GR S+G
Sbjct: 633 EYANVRKTGLAAITLREEDELIEVKYTDSDHDVFMVTKYGQCIRFNESDVRP-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L   D+VI M I                                           
Sbjct: 692 VRGMNLVDRDEVIGMQI------------------------------------------- 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +   +L VSE G GKRTS  +F   NR GKG++   +++  + G +V 
Sbjct: 709 ----------DSQGTELLIVSEYGMGKRTSIDEFTAQNRGGKGVKCYKITE--KTGNVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-----R 898
           V  V+++++I++++ +G +IR+  + I    R T GV + +  + ++V  + ++      
Sbjct: 757 VKAVDEDNEIMIINTEGIIIRMKCDGISELGRVTSGVKLINLPEGDKVACIAKVRRGDES 816

Query: 899 ESEIVDEAESTE 910
           E ++V+  ESTE
Sbjct: 817 EDDLVEPEESTE 828



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 97/242 (40%), Gaps = 17/242 (7%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    ++ ++  +  G +K+ P+  Y   R+ G   + + +R+ED + ++    +   V 
Sbjct: 609 EKYNDDEYLLMATKKGLIKKTPIKEYANVRKTG--LAAITLREEDELIEVKYTDSDHDVF 666

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      + G   +N++  ++             +       ++ 
Sbjct: 667 MVTKYGQCIRFNESDVRPTGRTSMGVRGMNLVDRDE---------VIGMQIDSQGTELLI 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCV 706
            +++G  +R  + +F   N  G   +K     E    ++ V+   ++N+I++    G  +
Sbjct: 718 VSEYGMGKRTSIDEFTAQN-RGGKGVKCYKITEKTGNVVGVKAVDEDNEIMIINTEGIII 776

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R     I    GR + GV+ I+L +GD+V  +A V   D   D+ +   +       + +
Sbjct: 777 RMKCDGISEL-GRVTSGVKLINLPEGDKVACIAKVRRGDESEDDLVEPEESTEDAENVET 835

Query: 767 GD 768
            +
Sbjct: 836 EE 837


>gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK330]
          Length = 826

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188]
 gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635]
 gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630]
 gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 833

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            N+ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
 gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612]
          Length = 834

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/905 (41%), Positives = 547/905 (60%), Gaps = 93/905 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V+I +EM++ Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K  
Sbjct: 6   EYDRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPT 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ A+YDA+ RMAQ++S R + I GQGNFGS+DGD  AA RYT
Sbjct: 66  RKSARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF PN+D S  EP VL AR P++LVNG  GIAVGMATNIP
Sbjct: 126 EAKMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A IDNPDI +D LM  I+GPDFPT  ++LG++GIK AY TGRG I IR
Sbjct: 186 PHNLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILLGKSGIKEAYRTGRGRIKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
               +E T   R+QIVVTEIPY VNK+ ++EKIAELV+EKR+  IADLRDE+D ++G R+
Sbjct: 246 SKVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRI 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-------KPERFTLIGILKAFVA 363
           VIELKR A+  +ILNQLY++T LQ  F V M+AL G        +P+   L  +L  +V 
Sbjct: 306 VIELKRDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVE 365

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E++ RRT + L KA  RAH+L GL IA+ N+DEV+ +IR + + + A+ +LM+R   
Sbjct: 366 HQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMER--- 422

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q +AIL++RL RLTGL R+ I  E   L   
Sbjct: 423 -----------------------FALTEIQAQAILDMRLQRLTGLEREKIEEEYAELQKM 459

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+    +L IIK EL  +K++    RRT     + D + ED I  E++V+T++
Sbjct: 460 IAEYKAILADEQLVLNIIKDELTEIKEKYGDERRTSFDIDVEDFDVEDLIEEEEVVITMT 519

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H+GYVKR+    YR+Q+RGGKG + +  R+ DFV  LF  +TH  +LFFS+ G VY+ K 
Sbjct: 520 HIGYVKRISADTYRSQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKA 579

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P G   ARG A++NIL L+  E+ITT++P  E      +  ++ ATK G +++  L+
Sbjct: 580 FEVPEGGRTARGTAIVNILQLDPDEKITTMIPVKEFT---ADKCLIMATKQGIIKKTDLT 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++    ++G I + L   DE+++V    +  DI++ T+ G  +RF    +R    R S+G
Sbjct: 637 EYDSSRKNGIIGINLREGDELINVRLVEENEDIVMGTQKGYAIRFTSKEVRPLK-RTSIG 695

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L   D V+ M IV                                          
Sbjct: 696 VRGIELRDDDVVVGMDIVSD---------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        + F+L VS+ G+GK TS   +R   R GKG++   V+K  + G LV 
Sbjct: 716 -------------DLFVLCVSDNGYGKLTSGDQYRSQKRGGKGVQTYKVTK--KTGELVG 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              ++ + +I++++++G +I++  N+I    R T+GV +      E++ ++ ++ + +  
Sbjct: 761 FCVISRDGEIMMINNQGVVIKLEGNDISTVGRNTQGVRLMKLQAGEQIATISKVYKEDPE 820

Query: 904 DEAES 908
           ++ E 
Sbjct: 821 EDIED 825


>gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
 gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella
           denitrificans ATCC 33394]
          Length = 902

 Score =  870 bits (2247), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 548/906 (60%), Gaps = 33/906 (3%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             ++D +  K    VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++ 
Sbjct: 2   TGANDHQFAKETIPVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELK 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
             WN  Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +S+R +L++GQGNFGSVDGD 
Sbjct: 62  NNWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDA 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K AH +L D+ ++TV+F  NYDGS +EP+VL  R+P +LVNG  GIAV
Sbjct: 122 AAAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMAT+IP HNL + + GC+ ++++P+  +D L++I++ PDFPTGA I G TGI+  Y TG
Sbjct: 182 GMATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIYGLTGIRAGYQTG 241

Query: 245 RGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           RG +VIR  SHIE    +  RE IVV EIPYQVNK+ ++EKI ELVREK +  IA+LRDE
Sbjct: 242 RGRVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G R+VIELKRG +A+V+LNQLY+ T LQ  FS+NMVAL   +P    L  IL  F+
Sbjct: 302 SDKDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQPRLLNLKQILNEFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EVV RRT + L KAR   H+  G A+A++N+DE++ +I+ S + + AR  LM R+W
Sbjct: 362 RHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRAW 421

Query: 423 NASDIKDLIDLID----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            ++ + +++   D                      +LS+ Q RAIL + L  LTGL +D+
Sbjct: 422 QSALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLDQDE 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDED 531
           I  E  SL   I + LDIL+   R+  II+ EL+ ++ +    RR+ I      D+ DED
Sbjct: 482 IVKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDERRSEINPFGGGDIADED 541

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I   +MVVT++H GY+K  P S Y+AQ+RGG+G+     +DEDF+  LF+ +TH  ++ 
Sbjct: 542 LIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMC 601

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++LG  +  KV+RLP G   +RG+ + N++ L+ GE+++ I+P  E      + YV FA
Sbjct: 602 FTNLGRCHWIKVYRLPEGGRNSRGRPINNVIQLDDGEKVSAILPVREFP---EDEYVFFA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++ +LS F  ++  G  A+ L   D ++ V   +  +DI+L + LG+ +RF   
Sbjct: 659 TAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSGSSDIMLFSNLGKAIRFNEY 718

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                    + G      A+ D  +S ++    +   +       +   +          
Sbjct: 719 --------WAGGAGDEDEAEND--VSGSLQQDEEDGGETEFNLQTNKGVRPSGRGSGGLR 768

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              L  +  +   ++ E   +L+     +LT ++ G+GKRT   D+    + G+GI A D
Sbjct: 769 GMRLPENGRIVSLLTAEIGSDLQ-----VLTATQNGYGKRTPIADYTRKGKGGQGIIAID 823

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             + N  G L+    V+  D ++L++  G LIR  V ++R   RA  GV + +  +   +
Sbjct: 824 TGERN--GELIGAVLVSPADDLMLITSGGVLIRTKVEQVRETGRAAAGVRLINLDEGTTL 881

Query: 892 VSVERI 897
           VS+ER+
Sbjct: 882 VSLERV 887


>gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
 gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13]
          Length = 883

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/906 (42%), Positives = 548/906 (60%), Gaps = 70/906 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LSEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+E
Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ ++W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTFIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL +  RL+ +I++EL++VK+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P                              
Sbjct: 607 LPEASRGARGRPIVNLLPLEANERITAILP------------------------------ 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGV 724
                                V    +   + + T  G   +  ++   R      S G+
Sbjct: 637 ---------------------VREYEEGRHVFMATASGTVKKTALTEFSRPR----SAGI 671

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             ++L +GD++I    V   D   +  +        +       +   T+        G 
Sbjct: 672 IAVNLNEGDELIG---VDLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATGVRGINLGE 728

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   +   E  ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V  
Sbjct: 729 GDGVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQVVGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +
Sbjct: 787 VQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDE 846

Query: 905 EAESTE 910
           E +S E
Sbjct: 847 ELDSLE 852


>gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012]
          Length = 828

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302]
          Length = 833

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 542/887 (61%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 815

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/898 (41%), Positives = 554/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ K+TVDF  NYD S +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM R           
Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------YKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQRRGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    +    +N Y+ F T++G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAE--HDDNSYLFFTTRYGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK+G  VRF  S +R   GR + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNM-GRAATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 AGDHVVGASVIS------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++   +R GKG++  ++++ N  G L  +  VN +
Sbjct: 705 -----DDQEVLVITEKGYGKRTLASEYATKSRGGKGMKTANITEKN--GPLAGLMAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + ++++++ G +IR  V  I    RAT GV +    K  ++V+   +      +  E 
Sbjct: 758 EDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVDEG 815


>gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1057]
          Length = 826

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 553/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823


>gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002]
          Length = 809

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/894 (41%), Positives = 559/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+ I +   D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +        Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R   GR + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ V++I +  R T+GV +     D  +V S+ RIR +E
Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVNE 809


>gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
 gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/905 (41%), Positives = 553/905 (61%), Gaps = 86/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  +      I + +I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL+ M  +G+
Sbjct: 1   MDENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + K ARI GEV+GKYHPHG+ A+Y+ + RMAQD+S R  L++G GNFGSVDGD  
Sbjct: 61  VADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  LL D+ KDTVD+  NYDG   EPVVL  R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATG 244
           MATNIP HNLGE +D   AV+DNPDI +  LM + I GPDFPTG  ILGR GIK AY TG
Sbjct: 181 MATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYILGRAGIKQAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI+IR    +E     ++QI+VTEIPY VNKAA++EKIA LVREK I  I DLRDES+
Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
            +G R+VIEL++   +DVILNQLYR TSLQ+ F VNM+ L    P++  L  +LK ++  
Sbjct: 301 MEGIRIVIELRKDVQSDVILNQLYRMTSLQTSFGVNMIVLVDNAPQQLGLKDVLKCYLDH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V VRRT++ L KA DRAH+L GL IA+ ++D ++ +IR S +   A   LM+     
Sbjct: 361 QIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLME----- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE+Q +AIL+++  RLTGL R  I  E +SL  +I
Sbjct: 416 ---------------------NFGLSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL++ SR+L II+ EL  +K++ +  RR+ I++  +DM+DED I +ED+V+T++ 
Sbjct: 455 TDLKDILNNHSRVLEIIRSELTEIKEKYNDKRRSEIIDAEIDMQDEDLIPQEDVVITMTV 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVKR+P+  YR Q RGGKG  G+ M ++D V     + TH  +L F++ G VY+ K +
Sbjct: 515 NGYVKRIPVDTYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P+ S  ++G  ++N+L+L++ E++  ++P      +    ++ F T  G V+R  + +
Sbjct: 575 QVPLASRTSKGIPIVNLLNLDKDEKVLAMVPVE--RENSPAKFLFFVTAQGIVKRVPIEE 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I +SGKIA+ L   DE++S +  T  + IL+    GQ +RF  + +R   GR + GV
Sbjct: 633 FENIRQSGKIAINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPM-GRTATGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +G ++  G +VI M                                              
Sbjct: 692 KGFNV-NGSRVIGMT--------------------------------------------- 705

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      + Q+IL+V+EKG+GK++   D+R++NR GKG++   V+  N  G LV +
Sbjct: 706 --------TDFEGQYILSVTEKGYGKKSKLEDYRMTNRGGKGVKTIQVTDKN--GPLVFL 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN ++  ++++++G +IR+ + ++ + SR T+GV + S   ++ V +V  + +SE  +
Sbjct: 756 RAVNGDEDCLIMTNEGIVIRISLEKVSVYSRNTQGVKLISVEDNQTVSTVAIVYKSEDDE 815

Query: 905 EAEST 909
           E E  
Sbjct: 816 ETEGD 820



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 65/412 (15%), Positives = 134/412 (32%), Gaps = 38/412 (9%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   + N   V+ IIR        +    +RS            ID     +     + +
Sbjct: 457 LKDILNNHSRVLEIIRSELTEIKEKYNDKRRSEIID------AEIDMQDEDLIPQEDVVI 510

Query: 450 SEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           +      +  + +       R       ++    +I +    + +   LL    Q  +  
Sbjct: 511 TMTVNGYVKRIPVDTYRLQNRGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYR 570

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVRED---------------MVVTVSHLGYVKRVPL 553
                 P  +R  +G+  +   +    E                 +  V+  G VKRVP+
Sbjct: 571 IKGYQVPLASRTSKGIPIVNLLNLDKDEKVLAMVPVERENSPAKFLFFVTAQGIVKRVPI 630

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             +   R+ GK    + +R+ D +      +  + +L  ++ G   +     +      A
Sbjct: 631 EEFENIRQSGKI--AINLREGDELISAKPTTGSSQILIAAANGQAIRFNETDVRPMGRTA 688

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G    N                    + +   Y++  T+ G  +++KL D+   NR GK
Sbjct: 689 TGVKGFN----------VNGSRVIGMTTDFEGQYILSVTEKGYGKKSKLEDYRMTNRGGK 738

Query: 674 IAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               +   D+    + +     + D L+ T  G  +R  +  +     RN+ GV+ IS+ 
Sbjct: 739 GVKTIQVTDKNGPLVFLRAVNGDEDCLIMTNEGIVIRISLEKV-SVYSRNTQGVKLISVE 797

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
               V ++AIV  ++ D +           Q         +    + + + E
Sbjct: 798 DNQTVSTVAIVYKSEDDEETEGDNENGELNQTTDQETAGIQEEDAQTEENAE 849


>gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK160]
          Length = 826

 Score =  869 bits (2246), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 550/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDTSAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
 gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531]
          Length = 824

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/894 (43%), Positives = 548/894 (61%), Gaps = 88/894 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y 
Sbjct: 16  QGRIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 75

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 76  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 136 VRMSKIAELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 195

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNPD  +D LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 196 HNMVEVINGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 255

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 256 RAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 315

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  +L+ ++  +E V+ RR
Sbjct: 316 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKHVLEHYIDHQEMVITRR 375

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM              
Sbjct: 376 TRYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM-------------- 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 422 ------------DGFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKLIEELKGILA 469

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R ++L IIK EL+ V+D+    RRT I     +M+ +D I  ED+VVT++   Y+KR+P
Sbjct: 470 DRMKVLAIIKNELIEVRDKYGDKRRTEITFDASEMDIKDLIAEEDVVVTLTLNNYIKRIP 529

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G  +  K + +P    Q
Sbjct: 530 LDTYRRQRRGGVGVRGMGTKETDIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQ 589

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L++   ERIT ++   E      + Y+   TKHG V++  LS+F  I R+G
Sbjct: 590 AKGTAIINLLAVENDERITAVIQVKEFR---ADRYLFLGTKHGVVKKTPLSEFGSIRRNG 646

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+ G+ + FP   +R   GR + GVRGI+LA G
Sbjct: 647 LKAVNLDEDDELIGVKFTDGENRIMLGTRGGKAITFPEEGVRSM-GRVARGVRGITLADG 705

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M ++                                                   
Sbjct: 706 DEVVAMDVLRS------------------------------------------------- 716

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +LTV+E G+GKRT++ ++R   R GKG+    V++  + G +V +  V +N +
Sbjct: 717 ----DSEVLTVTEGGYGKRTTASEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVRENQE 770

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE---RIRESEIV 903
           ++L++ +G +IR  V+EI + SR T+GV + + A+ +RV S+    RI +S   
Sbjct: 771 LMLITTEGIVIRTSVDEISLISRNTQGVKLMTIAESDRVASMATMNRIVDSAGE 824


>gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
 gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725]
          Length = 809

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/894 (41%), Positives = 559/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENASLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R+++VVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+ I +   D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +        Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SGK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R   GR++ GV+G++
Sbjct: 632 GKSGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V++  + G +V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVTE--KTGRIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I+L S +G  IR+ V++I +  R T+GV +     D  +V S+ RIR  E
Sbjct: 756 DEDEIMLCSTEGIFIRLEVSQIPVQGRNTQGVKLMRIDGDNIKVSSIARIRVDE 809


>gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
 gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM
           20601]
          Length = 840

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/891 (41%), Positives = 544/891 (61%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +T +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNDRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y  + RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I++  LME I GPDFPT  +I+GR+GI+ AY TGRGSIV
Sbjct: 183 IPTHHLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIMGRSGIRRAYETGRGSIV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +E I++TEIPYQVNKA ++E+IAEL REK+I  I D+ DESDR G R
Sbjct: 243 VRARVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N LY+ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIINNLYKMTALQTTFGINMLALVDNHPKVLNLKQILYHYLEHQKIVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D V+ +IR S   ETA+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R  I  E  +L   I +   
Sbjct: 414 -----------------FQLSDKQAQAILDMRLQRLTGLERSKIEEEYQNLMTLINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   R+L II++EL  +K +    RRT I+   ++++EDED I  E++ +T++  GY+
Sbjct: 457 VLADEERILEIIREELEEIKIKYADKRRTEILTGDIVNIEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   S+H ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAASSHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L +   E++  ++   E      N ++ F TKHG V+R  +S F +I
Sbjct: 577 YGRTAKGIPLINLLGIESQEQVNAVINVSEFT---ENSHLFFTTKHGVVKRTDISQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A+ L   DE++SV+      +I++ TK GQ + FP + IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVDLRENDELISVQITDGNKNIIIATKQGQSIYFPENNIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M I+                                               
Sbjct: 693 LREDDEVIGMEILED--------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +Q +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V+
Sbjct: 708 --------DQKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + I+L++  G +IR  +  +    R+  GV +    ++E+V +V ++ +
Sbjct: 758 GEEDIMLMTVSGVMIRFEIGTVSQTGRSAMGVKLIRLDENEKVATVAKVPK 808


>gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53]
          Length = 837

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/900 (42%), Positives = 552/900 (61%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ +  V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL  M ++G+  +K +
Sbjct: 4   NKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  ++ D+ K+TVDF PNYD    EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL E +D   A++DNPDI +  LM   I+GPDFPTG +ILGR GI+ A+ TGRGSI++
Sbjct: 184 PHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSILV 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+E     + +IVVTE+PYQVNKA ++ KIA+LVREK+I  I  L DES+R+G R+
Sbjct: 244 RSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++ A  DVILNQLYR T LQ+ F VNM+AL    P++  +   L+ +V  + +V V
Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVDKTPKQMGIREALQHYVDHQIDVTV 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA DRAH+L GL IA+ ++DE++ +IR S N   AR  LM++          
Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQ---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AILE+RL RLTGL RD I NE   L   I +  DI
Sbjct: 414 ----------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMATIADLRDI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R+L II+ EL  VK+     RRT I E   DM+DED I  ED+V+T++  GY+KR
Sbjct: 458 LANHDRVLSIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P   
Sbjct: 518 MPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSG 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L+L++ E++  ++P   D     + +++F TK+G V+R  +S+F  I +
Sbjct: 578 RTAKGLPVVNLLNLDKEEKVRALVPVRPDS---ESSFLLFVTKNGLVKRTPMSEFDSIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   DE++ V+  T +++I++    G+ VRF    IR   GR + GV+G ++ 
Sbjct: 635 NGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV- 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G  V+  A                                                   
Sbjct: 693 DGSIVVGAA--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L VSE G+GKRT+  ++R++ R  KG++  +V+  N+ G LV+V  VN +
Sbjct: 702 --TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +  ++V+D G +IR+ V +I I SR T+GV + + + DE V  V  + + E V+EA   E
Sbjct: 758 EDAMIVTDSGIIIRISVGDIGIYSRNTQGVKLINVSGDESVAKVAIVEKEEDVEEASDQE 817


>gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
 gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96]
          Length = 877

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/894 (43%), Positives = 535/894 (59%), Gaps = 69/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K
Sbjct: 6   KEIIPVNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ++S+R +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVDF PNYD S  EP VL  R P +L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+  C+A+ID PD+ +  LM  I GPDFPT A+I G +GI NAY TGRG I +R  
Sbjct: 186 NLSEVISACLAMIDQPDLTVHDLMAHIPGPDFPTAAIINGASGIYNAYTTGRGKIYLRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E      R+ I+ TE+PYQVNKA +LEKIAELV+E ++  I+ LRDESD+ G R+VI
Sbjct: 246 CHFEDIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY+ T  Q++F +NMVAL   +P    L  I+ AF+  R E+V RR
Sbjct: 306 ELRRGEMPEVVLNNLYKQTQFQTVFGINMVALLDGRPHCMNLREIISAFINHRREIVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+RAH+L GLAIA+AN+DE++ +I+ +  P  A+  L++++W+A  +  L+D
Sbjct: 366 TIYNLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALLD 425

Query: 433 LIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             D                 G   LSE Q +AILELRL RLTGL +D I NE   L  +I
Sbjct: 426 RADADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ II++EL+++K++    RRT I++   D+ DED I  EDMVVT+SH
Sbjct: 486 DEYLFILGSDVRLMEIIREELVAIKEQYSDERRTEILQNHSDLSDEDLITEEDMVVTMSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PLS Y+AQRRGG+G+S    ++ D+V  L + +TH ++L FSS G VY  KV+
Sbjct: 546 EGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK  +N+L L +GE+I  I+P  E                          
Sbjct: 606 QLPVASRAARGKPFVNLLPLEEGEKINAILPIRE-------------------------- 639

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                                     T    I + T  G   + P+     F  + + G 
Sbjct: 640 -------------------------FTDSKFIFMATTAGTVKKTPLKE---FENQRANGK 671

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             I L + D ++ +A+           + +     A     +       +      +   
Sbjct: 672 IAIDLREDDTLVGVAVTD----GQQNVLLFSSTGKAVCFNEADVRSMGRTASGVRGIRLQ 727

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             ++    +   E  +L ++E G+GKRT   +F    R G+G+ A   S  N  GA+V  
Sbjct: 728 EGQKVISLIIATEGTVLNITENGYGKRTKLEEFTCHKRGGQGLIAIQTSARN--GAVVGA 785

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             VNDND+I+L++D GTL+R PV+ I +  R T+GV I    K+E+V+ V+RI 
Sbjct: 786 VLVNDNDEIMLITDGGTLVRTPVDGISVVGRNTQGVTIIKLGKNEKVIGVDRIE 839



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 16/251 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +   +  G VK+ PL  +  QR  GK    + +R++D +  + +     +VL F
Sbjct: 640 FTDSKFIFMATTAGTVKKTPLKEFENQRANGKI--AIDLREDDTLVGVAVTDGQQNVLLF 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G         +      A   + +  + L +G+++ +++   E         V+  T
Sbjct: 698 SSTGKAVCFNEADVRSMGRTA---SGVRGIRLQEGQKVISLIIATE-------GTVLNIT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R KL +F    R G+  + + +       +        ++I+L T  G  VR P
Sbjct: 748 ENGYGKRTKLEEFTCHKRGGQGLIAIQTSARNGAVVGAVLVNDNDEIMLITDGGTLVRTP 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  I    GRN+ GV  I L K ++VI +  +       D     +   +      S +T
Sbjct: 808 VDGI-SVVGRNTQGVTIIKLGKNEKVIGVDRIEGLAGVDDADEDDLLEGAESELGASEET 866

Query: 770 EEITSLKNDSS 780
               S   + S
Sbjct: 867 TNDDSEPGEES 877


>gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
 gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633]
          Length = 850

 Score =  869 bits (2245), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/906 (40%), Positives = 542/906 (59%), Gaps = 87/906 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E      E  E+      +   M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MSEE--KDLEFFEEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R  LI+G GNFGSV
Sbjct: 59  HELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L D+ KDT+++R NYD + +EP VL +R PN+LVNG  
Sbjct: 119 DGDSPAAMRYTEARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGAT 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+LGEV+     ++ NPD+    LME++ GPDFPTG ++LG++GI+ A
Sbjct: 179 GIAVGMATNIPPHHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVLGKSGIRRA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +RG   IE+    +E+I++TE+PY VNKA ++E+I++L  EK+I  I  L 
Sbjct: 239 YETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLN 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIE++R  SA V+LN LY+ T LQS F  NM+A+ G +P+  +L  IL+ 
Sbjct: 299 DESDRKGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVGQEPKILSLKEILRH 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEV+ RR+ +   KA DRAH+L GL +A+ ++D +V I+R S + + A+   M  
Sbjct: 359 YLNHQEEVIRRRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNE 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++R+ RLTGL R+ I  E   L
Sbjct: 419 --------------------------YGLSDKQAQAILDMRMVRLTGLEREKIDAEYADL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMV 539
              IKE  +IL+S  R   II+QELL ++ + D PRRT ++ G     EDED I +ED+V
Sbjct: 453 QALIKELNEILASEERRYEIIEQELLEIQQKFDNPRRTELLVGEALSLEDEDLIEQEDVV 512

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++  GY+KR+  S ++ QRRGG+G  G+ + D+DFV ++   STH S+LFF++ G VY
Sbjct: 513 ITLTKNGYIKRLANSEFKTQRRGGRGVQGMSVHDDDFVENMISCSTHDSLLFFTNTGKVY 572

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  A+G  +IN+L+++  E+I  I+  PE  S     ++ F T  G V+R
Sbjct: 573 QAKGYEIPEYSRTAKGLPVINLLNIDSTEKIQAIISVPE--SDETERFLFFTTLRGTVKR 630

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            KLSDF  I  +G  A++L   D+++ V   + ++ I+L T  G  V F    +R   GR
Sbjct: 631 VKLSDFKNIRTNGLRAIQLREDDQLIRVVVTSGQDGIILGTYHGNAVTFHEEKVRAM-GR 689

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+SL   D VI M I+                                      
Sbjct: 690 TAAGVRGVSLRDDDYVIGMDILTP------------------------------------ 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E+ +L VSEKG+GKRT++ ++ +  R GKG++   +++ N  G
Sbjct: 714 -----------------EREVLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKN--G 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV +  V   + ++++++KG +IR   +++    R   GV +    +D  V S+  +  
Sbjct: 755 PLVCLRTVTGEEDLMIMTNKGVIIRFHASDVSQTGRGALGVRMMRLDQDAIVSSLAIVDR 814

Query: 900 SEIVDE 905
            E  +E
Sbjct: 815 EEEAEE 820



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 97/255 (38%), Gaps = 15/255 (5%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    E  +   +  G VKRV LS ++  R  G     + +R++D +  + + S   
Sbjct: 608 SVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNG--LRAIQLREDDQLIRVVVTSGQD 665

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++  +  G        ++      A G   +++   +    +  + P  E         
Sbjct: 666 GIILGTYHGNAVTFHEEKVRAMGRTAAGVRGVSLRDDDYVIGMDILTPERE--------- 716

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           V+  ++ G  +R   S++    R GK    L        ++ + T T E D+++ T  G 
Sbjct: 717 VLVVSEKGYGKRTAASEYALKGRGGKGVKTLRITEKNGPLVCLRTVTGEEDLMIMTNKGV 776

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF  S +    GR ++GVR + L +   V S+AIV   +   +      + + +++  
Sbjct: 777 IIRFHASDV-SQTGRGALGVRMMRLDQDAIVSSLAIVDREEEAEETVTSSEETVVSEKVT 835

Query: 765 ISGDTEEITSLKNDS 779
            +        +    
Sbjct: 836 ENLQNFAQELVDEQE 850


>gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467]
          Length = 833

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 ISIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
 gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           vestibularis ATCC 49124]
          Length = 822

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/900 (41%), Positives = 551/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S  GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE S +N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTVINAKSDEGS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L V+EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+    E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818


>gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12]
 gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 845

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 548/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E + +  +I     IL
Sbjct: 411 ---------------FKLSEIQARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   +                                          
Sbjct: 695 DDDGQDEVIGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4]
 gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4]
          Length = 960

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/920 (41%), Positives = 556/920 (60%), Gaps = 44/920 (4%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S++I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG++ NKKY KCA+
Sbjct: 31  ISINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKCAK 90

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G  MG YHPHG++AIYDA+ R+AQ +S+R  L++GQGNFGSVDGDPPAA RYTE RL 
Sbjct: 91  VVGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARLM 150

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  ++ D+  DTVDF PNYD S  EP VL ARYPN++VNG  GIAVGMATNIP HNL 
Sbjct: 151 KIAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHNLT 210

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV++ C+ +++NP   L  ++E ++GPDFPT   I G++GI NAY TGRG  ++R     
Sbjct: 211 EVINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIYGKSGIANAYRTGRGKFLMRAKCSR 270

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E  SG RE I+V+EIPYQVNK  ++++IAELV EK I DI+D+RDESDR G R+VIELKR
Sbjct: 271 ENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIELKR 330

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A  +++LNQL+++TS+Q  FS+  +A++  +P    L   ++AF+  R +VV RRT +L
Sbjct: 331 TAQPEIVLNQLFKHTSMQESFSMIFLAVHNGRPVELPLPDAIRAFIDHRVDVVRRRTAFL 390

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID- 435
           LNKARDR H+L+G  IA+ +LD V+R IR S +   AR  L +     +      +L   
Sbjct: 391 LNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELAGV 450

Query: 436 -------------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                              G+ GT+ LS  Q   ILEL+L RLT L  D++  EL  +  
Sbjct: 451 TLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQVRE 510

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   IL+S  +L  +I +EL  V+++    RRT+I++   ++  ED I  E + VTV
Sbjct: 511 NIAEYESILASDKKLRRVIIKELEEVREKYGDVRRTQIIDESSELTLEDLIADEQVAVTV 570

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+KR P+S YR QRRGG GR G+  R+EDFV  L + STH  +L F++ G V+  K
Sbjct: 571 SHSGYLKRTPISTYRQQRRGGTGRIGMKTREEDFVAQLIVDSTHAYLLCFTNSGRVFWLK 630

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           ++ +P      +GK + ++L+L  GE++   +P    E    + Y+ FAT+ G V++  L
Sbjct: 631 IYEIPDVLAAGKGKHIASLLALQPGEKVVAYLPVRNLE--DASKYIFFATREGIVKKTPL 688

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------AIRV 715
            DF  +   G IA+ +D  DE+++V   + E+ + L T+ G  VRF           +R 
Sbjct: 689 PDFSNVMARGIIAINIDKDDELIAVRITSGEDVVFLATREGMAVRFSEKYDPEKSGGLRP 748

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI---------- 765
             GRN+ G +GI+L KGD VI  A+    +    +R         ++ L           
Sbjct: 749 M-GRNAGGNKGITLKKGDYVIGAAVTDSREKRDGQRDELAVATKLEKELAAVRAEIAAAE 807

Query: 766 --------SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                   S + EE  + +    V      +   +L L    IL+V+E G+GKRT   ++
Sbjct: 808 AELQKARDSKNEEEAKAARKALDVVEEKLCKLDGKLGLSPCLILSVTENGYGKRTDVEEY 867

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R++NR G G+     S   + G + ++  V++  +++ +S  G +IR+  N IR A R+T
Sbjct: 868 RLTNRGGSGVINMKASA--KTGKVSSIQLVDETTELMAISQFGKIIRIDTNTIRAAGRST 925

Query: 878 KGVVIFSTAKDERVVSVERI 897
           +GV + +   D++V +   I
Sbjct: 926 QGVKLLNLDTDDKVAAAVTI 945


>gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK408]
          Length = 826

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
 gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4]
          Length = 802

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/886 (43%), Positives = 546/886 (61%), Gaps = 86/886 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + IT+EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  ++ + K 
Sbjct: 3   KVIPIEITEEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+ +YHPHG+A +YDAL R+AQD++ R  L++G GNFGS+DGD PAA RYTE R
Sbjct: 63  AYIVGEVLARYHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L D+ KDTVDF PNYDG+ QEP VL +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 123 LSRYALEMLRDINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG +A+IDNPD+ L+ LM  + GPDFPTG +ILGR GI+ AYATGRG IV+RG +
Sbjct: 183 LGEVIDGLLALIDNPDLSLEELMRYVPGPDFPTGGIILGREGIRTAYATGRGGIVVRGKA 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G+R  IV+TEIPYQVNKA +LE+IAELV+EKR+  +ADLRDESDR G RVV+EL
Sbjct: 243 TIE-RKGNRNLIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A   VILN+LY++T L+  F V M+AL   +PE  +L  +++ ++  ++EVVVRR +
Sbjct: 302 KRDADPQVILNRLYKHTQLEETFGVIMLALVNGQPEVLSLKEMMRHYLNHQKEVVVRRCQ 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A+ R  V+ GL +AV N+D VV++I+ +P+  TA+  L+                
Sbjct: 362 YELREAQLRLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLIS--------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T  L+E Q +AIL++RL RLT L R+ +  EL  L  +I     +L+  
Sbjct: 407 -----------TFGLTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +++ GI+K+EL ++K+    PRRT IV+  +    ED I  E +VV +SH GY+KR   S
Sbjct: 456 AKVWGIVKEELKALKERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKS 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q RGG+G +G+ ++D DFV  L++ +TH  +LFF+S G V++ KV+ +P      R
Sbjct: 516 LYRSQHRGGRGVTGLKLKDGDFVRHLYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGR 575

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G AL N+L L+  E++T I+P  +      + YV+  T+ G V++  L +   I R G  
Sbjct: 576 GTALPNLLQLSPEEQVTAIIPVADFS---EDKYVLLVTRQGVVKKLPLGELANIRRVGLN 632

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ LD  DE+++      E ++LL T+ G+ +RF  + +R   GR + GVRG+ L  GD+
Sbjct: 633 AISLDPGDELVAAALPGPEEEVLLVTEGGKAIRFRAAEVRPM-GRAARGVRGMKLRPGDR 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +A++  A                                                  
Sbjct: 692 VAGLAVLDGAG------------------------------------------------- 702

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +L V+  G+GKR  + DF +  R G G+ A  VSK +  G +V V  V D ++I+
Sbjct: 703 ----EVLLVTAGGYGKRVKTADFPLQGRGGMGVTALAVSKTS--GPVVGVEVVRDEEEIL 756

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L S  G L R+ V E+ +  R  +GVV+     ++R+V++ +I E 
Sbjct: 757 LASAAGWLTRLKVKEVPVMGRQARGVVLMRLQPEDRLVALAKIGED 802



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 78/248 (31%), Gaps = 63/248 (25%)

Query: 716 FAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              + +  +  + L      + +++++ +  +    A  +  +     +    +      
Sbjct: 410 LTEKQAQAILDMRLQRLTALEREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKAL 469

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +E  +    + +       R ++L   EQ ++ +S +G+ KR     +R  +R G+G+  
Sbjct: 470 KERFADPRRTLIVDEEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTG 529

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA---SRAT--------- 877
             +   + +  L   +  N +D ++  +  G + R+ V EI  A    R T         
Sbjct: 530 LKLKDGDFVRHL---YLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLS 586

Query: 878 -------------------------KGV-------------VI----FSTAKDERVVSVE 895
                                    +GV              +     S    + +V+  
Sbjct: 587 PEEQVTAIIPVADFSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAA 646

Query: 896 RIRESEIV 903
                E V
Sbjct: 647 LPGPEEEV 654


>gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
 gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K]
          Length = 857

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/905 (39%), Positives = 536/905 (59%), Gaps = 85/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++++  ++  I +V+++  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MANENGQDGRIENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              K Y K ARI G+VMGKYHPHG++AIY+A+ RMAQ++S R +L++G GNFGSVDGD  
Sbjct: 61  TPEKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D+ PNYD S +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+     ++DNPD     LM+ + GPDFPTG +++G++GI++AY +G+
Sbjct: 181 MTTNIPPHNLAEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVMGKSGIRHAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+I +R    +E     RE+I+VTEIPY VNKA ++E+IAEL R+KR+  I DL DESDR
Sbjct: 241 GTITLRAKVDVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VI+++R  SA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +
Sbjct: 301 DGMRIVIDVRRDMSASVILNNLYKLTPLQTSFSFNMVAIVNGAPKVLSLKSILEHYLVHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EEV+ RRT++ L KA  RAH+L GL IA+ ++D +++IIR S   +TA+  LM+R     
Sbjct: 361 EEVIRRRTEFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL RD + NE N+L   I 
Sbjct: 416 ---------------------YDLSDKQAQAILDMRLVRLTGLERDKVENEYNNLMALIT 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT-VSH 544
           +  DIL+   R+  II  ELL ++ +    RRT ++ G +   +++ ++ E+ VV  ++H
Sbjct: 455 DLKDILAKPERIKKIIYDELLEIQSKFGDKRRTELLVGEVLSIEDEDLIEEEDVVIALTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S ++ Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K +
Sbjct: 515 NGYIKRLPASEFKVQNRGGRGIQGMGVHDDDFIEHLISTSTHEVLLFFTNTGKVYRAKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L +N  ER+ T++   ++        + F T+ G V+R  + +
Sbjct: 575 EIPEYGRTAKGIPIINLLGINSDERVQTVVNIGKEVKPEQA--LFFITRLGTVKRTAVGE 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE+ +V     + +I + T  G  V F  +A+R   GR + GV
Sbjct: 633 FANIRSNGLKALTLHEDDELSNVLMTDGQQNIFIGTHNGYAVSFSETAVRSM-GRTAAGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L +GD V+                                                
Sbjct: 692 RGIRLREGDYVVG----------------------------------------------- 704

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  +L +  Q IL +SEKG+GKRT+  D+ I  R GKG++  ++++ N  G L  +
Sbjct: 705 ------SDLLIPGQEILVISEKGYGKRTAVSDYPIKGRGGKGVKTANITEKN--GPLAGI 756

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V   + I+L++D G LIR  V  +    RAT GV +     + +V ++  +       
Sbjct: 757 AAVTGEEDILLITDTGVLIRFKVANVSQTGRATLGVRLIRVDDEAKVATMATVEAEPDEP 816

Query: 905 EAEST 909
           E ++ 
Sbjct: 817 ETQTA 821



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 96/257 (37%), Gaps = 15/257 (5%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E  +  ++ LG VKR  +  +   R  G     + + ++D ++++ +     ++   + 
Sbjct: 612 PEQALFFITRLGTVKRTAVGEFANIRSNG--LKALTLHEDDELSNVLMTDGQQNIFIGTH 669

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+        +      A G   I +   +       ++P  E         ++  ++ 
Sbjct: 670 NGYAVSFSETAVRSMGRTAAGVRGIRLREGDYVVGSDLLIPGQE---------ILVISEK 720

Query: 655 GNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  +SD+    +  +  K A   +    +  +   T E DILL T  G  +RF ++
Sbjct: 721 GYGKRTAVSDYPIKGRGGKGVKTANITEKNGPLAGIAAVTGEEDILLITDTGVLIRFKVA 780

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR ++GVR I +    +V +MA V     + + +    +       +      +
Sbjct: 781 NV-SQTGRATLGVRLIRVDDEAKVATMATVEAEPDEPETQTATTEPTVPTENVTDTGLAQ 839

Query: 772 ITSLKNDSSVEGNISEE 788
           +  L   +  + N    
Sbjct: 840 VDDLLARAEADQNEPNN 856


>gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131]
          Length = 886

 Score =  869 bits (2244), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/891 (43%), Positives = 548/891 (61%), Gaps = 84/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++ QGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAVGMATN
Sbjct: 123 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TGRGSI 
Sbjct: 183 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQ 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+  R G 
Sbjct: 243 MRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGV 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++  ++ V
Sbjct: 303 RVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR        
Sbjct: 363 VRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q +AIL++RL RLTGL RD I  E N L   I E  
Sbjct: 415 ------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGY 547
            IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+SH  Y
Sbjct: 457 AILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K + +P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ LS+F +
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSALSNFSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + GV+GI
Sbjct: 635 INRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTATGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+V+ + +      D                                        
Sbjct: 694 TLREGDEVVGLDVAHANSVDE--------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V +  V
Sbjct: 715 ------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVVCITTV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 761 TGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811


>gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK405]
          Length = 826

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G   V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVESDDKEDVAEEE 823


>gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 907

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/915 (42%), Positives = 541/915 (59%), Gaps = 102/915 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+L+ M   G+ +NK+Y KCA +
Sbjct: 27  QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+ KYHPHG+A++YDAL R+AQDW+LR  LI+GQGNFGSVDGDP AA RYTECRL++
Sbjct: 87  VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLER 146

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL D+ KDTVD+ PN+D S  EP VL  R+PN+LVNG  GIAVGMATNIP HN+GE
Sbjct: 147 LSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGE 206

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  V +I+NP   +  LM  I GPDFPT  +I GR GI+ AY  GRG+I +R  + +E
Sbjct: 207 VIDAAVHLIENPKATVLDLMRFIPGPDFPTAGIIRGRDGIRAAYEKGRGTIQVRARTVVE 266

Query: 258 -KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                +RE IVVTEIPYQVNKA ++E IAELVREKRI  I+DLRDES R+G R+VIELKR
Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A V+LN LY +T +Q  F V M+A++G +P   TL  +L+ FVA R +VV RRT+Y 
Sbjct: 327 DALAQVVLNNLYAHTQMQMGFGVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYE 386

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KAR+R H+L+G  IA+ ++DE++ +I+ + + + AR E+M R                
Sbjct: 387 LRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMAR---------------- 430

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AILE++L RLTGL R  I +EL  +   I    +IL+S   
Sbjct: 431 ----------FALSELQAKAILEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKV 480

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I  EL  VK      RRT I     D+  ED I  E+MVVTVSHLGYVKR P+S+Y
Sbjct: 481 LMELIVGELREVKQLFADERRTEIQGEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLY 540

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG+G++G   RDEDF+  LF+ STH+ +L FS  G VY  KV  +P     A+GK
Sbjct: 541 RAQKRGGRGKTGAATRDEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600

Query: 617 ALINILSLNQGERITTIMPFPEDESS------------------------WNNLYVVFAT 652
            ++N++ L  GE++  I+P                                   +V   T
Sbjct: 601 PIVNLVQLAPGEKVAAILPVRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVT 660

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G +++ +L  F +   +G I + ++  DE+++         ILL+T  G  +RF  S 
Sbjct: 661 RKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAIRFEESD 720

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+GI+L +GD+V+                                    
Sbjct: 721 VRPM-GRTAYGVKGITLEEGDEVV------------------------------------ 743

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                        +         +   +LTV+  G+GKRT   ++R+  R GKG+     
Sbjct: 744 -----------AGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQTRGGKGLITIKT 792

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERV 891
           ++ N  G +VA  PV D ++++L+++ G LIR+P   I +  R T+GV + +   K+E+V
Sbjct: 793 TERN--GPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVIGRNTQGVRLITLESKEEQV 850

Query: 892 VSVERIRESEIVDEA 906
           V V R+ E+    E 
Sbjct: 851 VGVARVAETTPEAEE 865


>gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria
           bacterium BBFL7]
 gi|89516338|gb|EAS18999.1| DNA  gyrase (type IIA topoisomerase),  subunit A [Flavobacteria
           bacterium BBFL7]
          Length = 840

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/900 (40%), Positives = 557/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   DGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGDPPAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG VA IDN DI++D L+  ++ PDFPTG +I G  G+K+A  TGRG + IR
Sbjct: 183 PHNLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIYGYDGVKDAMHTGRGRVKIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E+    RE I+V E+PYQVNKA M++K A+L+ EK++  I+ +RDESDR G R+V
Sbjct: 243 GRVRLEEVK-GRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  ++++N+LY++T+LQS FSVN +AL   +P+   +  ++  FV  R +VVVR
Sbjct: 302 YILKRDAIPNIVINKLYKHTALQSSFSVNNIALVKGRPQLLNVKEMIHYFVEHRHDVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA +RAH+L GL IA  N+DEV+ +IR S N E AR +L++R           
Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +RNE N L   I +  DIL
Sbjct: 411 ---------------FELSEIQARAIVEMRLRQLTGLEQDKLRNEYNDLIATITDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL+ +K++    RR++I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ARKERRMDIIKEELIEIKEKYGDERRSQIEYAGGDLSIEDMIADEQVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P++ Y+ Q RGG G+     RDEDF+ D+F+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PITEYKTQNRGGVGQKASTTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q + +  ++   +  DE   N+ YV+  TK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEQDDNVKAVICTQDIKDEEYINSHYVIMCTKKGVVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D +L  +  T ++ ++L  K G+ +RF  +  R   GRN+ GVRGI L
Sbjct: 636 TNGINAITIREGDTLLEAKLTTGDSHVMLGLKSGKAIRFDEAKTRAM-GRNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V   D++                                         
Sbjct: 695 ADDNDEVIGMVAVNDMDSN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+R +NR GKG++   V++  + G LVA+  V 
Sbjct: 714 -----------ILVVSEKGYGKRSSLDDYRETNRGGKGVKTISVTE--KTGGLVALKNVT 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D+D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V ++ + E  +  E 
Sbjct: 761 DDDGLMIINKSGVAIRIDVKNLRVMGRATQGVRLINLKGNDSIAAVAKVAQEEDSEINED 820


>gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.]
          Length = 808

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/891 (40%), Positives = 555/891 (62%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + ++ ++I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++  +WNK Y
Sbjct: 3   ETEKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGDPPAA RYT
Sbjct: 63  KKSARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + A  +++DL K+TVD  PNYD S  EP +L A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 EIRLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV +    +IDNPDI  + L++I+ GPDFPT  +I GR+GI +AY+TGRG + +R
Sbjct: 183 PHNLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGIIHGRSGIYDAYSTGRGKVKVR 242

Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E    ++ E IVVTE+PY VNKA ++EKIAEL+R+K+I  +  +RDESDR+G R+
Sbjct: 243 ARVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            + LK+   + +I+N LY++T ++S F +  +A+   +PE  TL  IL+ FV  R+++++
Sbjct: 303 ALGLKKDQMSKIIINHLYKHTRMESTFGIIFLAVVNNRPEVLTLKQILEYFVLHRKDIII 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTK+ L KA  RAH+L GL +A+ N+DEV+ +I+ S +P  A++ L+ R          
Sbjct: 363 KRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISR---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++ +Q +A+L++RL RLTGL R+ I  E ++L  +I    +I
Sbjct: 413 ----------------FDMTPIQAQAVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S + +L IIK EL  +K+E    RRT I++   ++  ED IV EDMVVTVS  GY+KR
Sbjct: 457 LASETLVLNIIKDELTQIKNEYGDLRRTEIIDETENISIEDLIVEEDMVVTVSKDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P S+Y +Q RGGKG++ ++ ++EDFV+ LF+ STH   LFF++ G VY  KV+ +P   
Sbjct: 517 TPASIYNSQSRGGKGKTAMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAG 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GKA++N+L+  +GE++TT++   + E      +V+ AT+ G ++R  +  + +   
Sbjct: 577 RTSKGKAIVNLLNFAEGEKLTTVLAVKDFE---PGSFVIMATRSGQIKRTDIMAYSRPRA 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G  A+KLD  DE+++V       ++ + + +G+ +RF  S IR   GR + G+RG+ LA
Sbjct: 634 GGIKALKLDEGDELIAVRITDGTLNVFVCSAMGKSIRFHESDIRA-TGRVTGGIRGMRLA 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           KGD+++ M ++ H                                               
Sbjct: 693 KGDRIVGMEVLTHG---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +  V+E GFGKRTS  ++ +  R GKG+     S+ N  G +VA+  V+++
Sbjct: 707 -------QTLFAVTENGFGKRTSIDEYPVHKRGGKGVICIKTSERN--GQVVAILIVDED 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D ++L++D G +IR P++ I + SR T+GV + +    E+V+   R+ E +
Sbjct: 758 DDLMLMADSGKIIRTPISGISVISRNTQGVKLINREATEKVIGAARLAEKD 808


>gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
 gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482]
 gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510]
          Length = 855

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 563/905 (62%), Gaps = 87/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  +   ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE
Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821

Query: 906 AESTE 910
             +T+
Sbjct: 822 NSNTD 826



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 12/251 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  + G+ +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  DQ+ S+  V   +   DE          +         +  
Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTTNSDTN 844

Query: 774 SLKNDSSVEGN 784
           S     +    
Sbjct: 845 SDLTAEANSEE 855


>gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK353]
          Length = 826

 Score =  868 bits (2243), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/899 (40%), Positives = 552/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVMGKSGIYRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV+R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVIR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 700 DGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366]
 gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366]
          Length = 869

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/900 (41%), Positives = 556/900 (61%), Gaps = 88/900 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +   + +E   I  + I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM
Sbjct: 1   MAEDL---ENQENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGN+GS+
Sbjct: 58  LDLGLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R QK A  +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG  
Sbjct: 118 DGDSPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HN+ E ++  +A IDN +I +  LM+ I+ PDFPTGA+I G TG++ A
Sbjct: 178 GIAVGMATNMPPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIYGYTGVQEA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE    DRE I+VTEIPYQVNKA M+E+ AELV EK++  I++++
Sbjct: 238 FETGRGRIVMRAKAEIEAAK-DREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIK 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL   +P+   L  ++  
Sbjct: 297 DESNKDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGRPQLLNLRDLIHY 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVVVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++
Sbjct: 357 FVEHRHEVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEK 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I++E N L
Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL   S+ + IIK EL  +K++    RRT IV    DM  ED I  E++V+
Sbjct: 451 MKTIEYLQSILDDESKRMQIIKDELTEMKEKYGDERRTTIVHSAEDMSMEDFIEDEEVVI 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR P + YR Q RGGKG  G   R+EDF+  L I S H  +LFF+  G  + 
Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFW 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P G+  ++G+A+ NI+++ + E+I   +      D+    N Y++  TK G ++
Sbjct: 571 LRVYEIPEGTRLSKGRAIQNIINIPKEEKIKAFIKVKNLKDQEYLENNYIIMCTKKGTIK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D++L     T  ++I++  + G+ +RF    +R   G
Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPM-G 689

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++LA + D+V+ M  V    A                               
Sbjct: 690 RTATGVRGVTLAHEKDEVVGMIAVDDPGAT------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 IL VSEKG+GKRT   D+R++NR GKG++  +V+  ++
Sbjct: 720 ----------------------ILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVT--DK 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA+  V D D +++++  G +IR+ V+E+R+  RAT+GV + +   ++ + SV RI
Sbjct: 756 TGNLVAIKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815


>gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
 gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396]
          Length = 822

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 552/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQQEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S  GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSSKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S +N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L V+EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIVTEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+    E  E
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRATQGVKVMRLDDTARIVTFALVEPEEVDQVTEDQE 818


>gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
 gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis
           ATCC 6249]
          Length = 822

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 554/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKDELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    D  S ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINV--DSESSDDAYLFFTTRHGVVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  SE  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAASEKEEVGTEIE 817


>gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 812

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/891 (42%), Positives = 561/891 (62%), Gaps = 87/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D +  SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +  Y K 
Sbjct: 2   QVIPVKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+ A+Y+AL RMAQ++S+R  LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 62  ARIVGDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEAR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL D+ KDTVDF PNYDG+ +EPVVL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 122 LTKIAEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  V +IDN + +L+ +++ I+GPDFPTG +I GR GI  AY +GRGSI IR   
Sbjct: 182 LGELIDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGILEAYKSGRGSIKIRAKH 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE   G+RE IV+ E+PYQVNKA ++EKI+ELV++K I  I+++RDESDR+G RVVIEL
Sbjct: 242 HIE-HRGNREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A +++ILN LY++T +Q  F +NM+A+   +P+ F L+ IL  F+ FR+ VV+RRT 
Sbjct: 301 KKDAMSEIILNNLYKHTQMQVSFGINMLAILDKEPKLFNLMEILNTFIKFRKTVVIRRTI 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L +A+ RAH+L GL IA+AN+DEVV II+ S + + A+  L++R              
Sbjct: 361 YELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIER-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSEVQ +AIL+++L+RLT L  + ++ E + L  +I     IL   
Sbjct: 407 ------------FDLSEVQAQAILDMKLSRLTSLETNKLQKEYDELQEKIAYLTSILKEE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           S L  +IK+E L ++ +    R+T IV+   D++ ED I  EDMVVT++H GYVKRVPL 
Sbjct: 455 SVLNNVIKEEFLEIRKKYANERKTEIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLK 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGGKG+  +   + DF+ D +I   H +++  ++ G ++  KV+++P GS  ++
Sbjct: 515 TYERQNRGGKGKKALTTYENDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTSK 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+++L++ E+I TI+   + +    N  + F TK+G V+R  LS+F  I  +G  
Sbjct: 575 GKAIVNLINLDKDEKIQTIIKTSDFD---ENKSLAFFTKNGIVKRTNLSEFKNIRSTGVR 631

Query: 675 AMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           A+ +D  DE+++ +   +++  + + TK G  +RFP+ A+R   GRN+ GV+GI+   +G
Sbjct: 632 AIVIDKDDELVTAKIVKEDDKYLFIVTKKGMAIRFPVDAVREM-GRNARGVKGITFKIEG 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+    +                                                   
Sbjct: 691 DEVVGALSLRD------------------------------------------------- 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              ++Q IL+VSEKGFGKRT +  +R++NR GKG+ A  ++  N+ G LV V    +N  
Sbjct: 702 ---EKQEILSVSEKGFGKRTEAEAYRLTNRGGKGVIAMKLT--NKTGDLVGVVATEENHD 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++L++ KG +IRV ++ I    + T+GV +     D++VVSV +    +  
Sbjct: 757 LMLLTSKGKMIRVSIDSISKTGKNTQGVRLVRLDDDDKVVSVAKTPSQKEE 807


>gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 835

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/897 (41%), Positives = 547/897 (60%), Gaps = 90/897 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +ID     N +  ++ +++I++GPDFPTGA+ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+V+LNQLY++T LQ  F V M+AL   +P+   ++ +L  ++ 
Sbjct: 302 NREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLR 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+  L++    
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ +AI+++RL  LTGL R+ + NE   L   
Sbjct: 418 ----------------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMER 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E+L +  +    RRT I    LD+  ED I  +D+V+T++
Sbjct: 456 IGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    +++Q RGGKG  G+   +ED+V +LF+ STH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT ++P  E E   +  Y+  ATK G V++  ++
Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE---DGKYLFMATKKGLVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    E DI++ TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D+VI M +    D                                      
Sbjct: 692 VRGMNLSDRDEVIGMQLHTQGD-------------------------------------- 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L  SEKG GKRT+  +F   NR GKG++   +++  + G ++ 
Sbjct: 714 ---------------YLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE--KTGNVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V  VN++++I++++ +G +IR+    I I  R   GV + +   + +V S+ ++RE+
Sbjct: 757 VKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAKVRET 813


>gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis SK1087]
          Length = 826

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/899 (40%), Positives = 551/899 (61%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+ IIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDRS--DDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++                                                 
Sbjct: 700 EGDQVVGAGVI------------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 711 ----AEGDEVLVITEKGYGKRTLASEYPTKARGGKGIKTANITDKN--GPLAGLMTVTGE 764

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +   +  D AE  
Sbjct: 765 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTSVEADDKEDVAEEE 823


>gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
 gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis
           ATCC 35037]
 gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037]
          Length = 822

 Score =  868 bits (2242), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGVVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A]
          Length = 858

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +                                              
Sbjct: 695 DNDGQDEVVGMICIKD-------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  LK + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 711 -------LKTESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
 gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis ATCC 49296]
          Length = 822

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300]
 gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300]
          Length = 822

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 704 ----TNQDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
 gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96]
          Length = 832

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
 gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104]
 gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712]
 gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613]
 gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 833

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
 gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1]
          Length = 809

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/892 (40%), Positives = 528/892 (59%), Gaps = 84/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+  +K + K
Sbjct: 2   ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GE +GK+HPHG+ A+YDAL RMAQD+S+R  LIEGQGNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  LL D+ KDTVDF+PN+DGS +EP VL A++PN+LVNG  GIAVGMATNIP H
Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV      ++D+P+   + LM+ I+GPDFPTGA ++    +   Y  GRGS+ IR  
Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINPEELPKIYKKGRGSVTIRAK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    R  IV+TE+PYQVNKA +++KIAELV+EK+I  IAD+RDESDR+G RVVIE
Sbjct: 242 HTIEEVRK-RSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+  V+LN+LY+ T LQ+ F+ NM+AL   +P+   L   L+ F+ FR EV++RRT
Sbjct: 301 LKRDATPQVVLNRLYKLTPLQTNFNFNMIALVNGEPKLLNLKRYLEEFIGFRREVILRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            YLL KA  R H+L GL  A+ N+D VV++++ +P+P+ A   L ++             
Sbjct: 361 AYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREK------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL+++L RLTGL R+ I  E  +L  E      ++ S
Sbjct: 408 -------------FELSEAQAKAILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMES 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
                 +IK+E+  + ++    RRT+IV    +++ E  I  E++++ ++H G+V RV  
Sbjct: 455 DQEQRRLIKEEMAQIIEKFGDQRRTKIVSKESEIDIESMIEDEEVIIFLTHKGFVARVSA 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q R G G  G+  R+ DFV D+   S+   +L F++ G VY  K + +P     +
Sbjct: 515 GTYRTQSRSGTGVRGIKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPS 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG ++ N L    G  I + +   ++ S   +  V F T+ G V+R  L +F     +G 
Sbjct: 575 RGHSIRNFLPGMAGNEIVSRIIPVKEFSLNKD--VFFVTQRGYVKRTPLKEFSNPRSTGI 632

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L+  D ++ V   + +++I+L +K G+ ++FP++ +R   GRN+ GVRGI L   D
Sbjct: 633 NAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPVADVRQM-GRNARGVRGILLDPDD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++ A+V   D                                                
Sbjct: 692 SVVAAAVVEPEDR----------------------------------------------- 704

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                F+L V+EKG+GKR    +F +  R GKG+ A  +S+  + G +     + D++ I
Sbjct: 705 -----FLLIVTEKGYGKRVEIEEFHLQRRGGKGLIAAKLSE--KTGKVADATTLKDDEPI 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ILVS KG +IRV   +I +  R T+GV I   A+D+ VVSV ++ E+E  ++
Sbjct: 758 ILVSKKGKIIRVKSADIPVYGRHTRGVRIQKLAEDDAVVSVSKVTEAEEEND 809


>gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868]
 gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868]
 gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 841

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/904 (40%), Positives = 544/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  NKKY
Sbjct: 4   EGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           +K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYT
Sbjct: 64  LKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K +  +L DL K+TVDF+ N+D S QEP VL  + PN+LVNG  GIAVGMATN+ 
Sbjct: 124 EARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMA 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E VD   A IDN +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 184 PHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVLR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+   +R  I+VTEIPY VNKA M+ + +ELV+E +I  I ++RDESDR+G RVV
Sbjct: 244 AKVAFEEIG-NRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +P++  L  I+  FV  R E+V+R
Sbjct: 303 YELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KAR+RAH+L G          LD+ + IIR S  P+ A+  L+          
Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAE-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q +AIL+LRLARLTG+  D IR+E  ++   I +  
Sbjct: 415 ------------------FELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDLE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++ +R   IIK ELL VK++    RRT I     +M  ED I  E++V+T+SH GY+
Sbjct: 457 DILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  Y  +V+ +P 
Sbjct: 517 KRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +   +  D      +YVV  TK+G +++  L  + 
Sbjct: 577 GSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G  A+++   D++L        ++I++ TK G+C+RFP    R   GR S+GVRG
Sbjct: 637 RPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARAV-GRTSIGVRG 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL   D+VI M +V   +                                         
Sbjct: 696 ISLEDNDEVIGMIVVNDME----------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+  
Sbjct: 715 ----------NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQS 762

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V D + +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++   + V++ 
Sbjct: 763 VVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDE 822

Query: 907 ESTE 910
           E  E
Sbjct: 823 EIEE 826



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V++  VV ++  G +K+  L  Y   R  G     + +R++D +    + + ++ ++  
Sbjct: 612 YVKQMYVVMITKNGTIKKTSLEAYSRPRTNG--IHAIEIREDDQLLGARLTNGNSEIMIA 669

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    +       + G   +  +SL   + +  ++   +      N  V+  +
Sbjct: 670 TKNGKCIRFPEEKARAVGRTSIG---VRGISLEDNDEVIGMIVVND----MENETVLVVS 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + D+   NR GK  + L+      +++++++    ND+++  K G  +R  
Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMS 782

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RV  GRN+ GVR I+L   D++ ++A V       DE I      +      + + 
Sbjct: 783 VDNMRVM-GRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSEE 841


>gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
          Length = 833

 Score =  867 bits (2241), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GDEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4]
 gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855]
 gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4]
          Length = 852

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 562/906 (62%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  +   ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 EAESTE 910
           E  + +
Sbjct: 822 ENSNAD 827



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 12/248 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  + G+ +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T  ND+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  DQ+ S+  V   + +  +        +         T    
Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSITNPDL 844

Query: 774 SLKNDSSV 781
             + +S  
Sbjct: 845 IAEANSEE 852


>gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1]
 gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22]
 gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1]
 gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22]
 gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a]
 gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b]
 gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22]
          Length = 858

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRQVMKDELLEVKTKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   +                                          
Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645]
          Length = 833

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 541/887 (60%), Gaps = 85/887 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D    ++DNPD+  + LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ T+LQ+ F  NM+A+    P+  +L  IL+ +V  ++EV+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKGVPKILSLKRILENYVEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NKA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FEFSDRQAQAILDMRLRRLTGLERDKIENEYQELLKFIADLED 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK EL  V+ +    RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVIEIIKTELNDVRTKFGDARRTELLVGEVLSLEDEDLIEEEEVVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +RAQRRGG+G  G+ + D+DFV +L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRMANSEFRAQRRGGRGVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  E+I  I+       +    Y+ F T  G V+R  ++ F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSAEKIQAIISVE--GKAEAGKYLFFTTLKGTVKRTAVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V T      +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RSNGLIAISLKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDM-GRTASGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  AI+                                               
Sbjct: 694 LRENDYVVGAAILD---------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + +L ++E G+GKRT + ++ +  R GKGI+  ++++ N  G L  +  VN
Sbjct: 708 -------ENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKN--GPLAGLTTVN 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            N+ I+L+++KG +IR  V+ +    RAT GV +       +VV++ 
Sbjct: 759 GNEDILLITNKGVIIRFNVDSVSQTGRATLGVRLMRMEDGAKVVTMA 805


>gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
 gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1]
          Length = 829

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/905 (40%), Positives = 554/905 (61%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+IVV+E+PY VNK+ +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG    +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I+                                            
Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   DE
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817

Query: 906 AESTE 910
             + E
Sbjct: 818 EATDE 822


>gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 880

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/899 (43%), Positives = 546/899 (60%), Gaps = 67/899 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVVTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAAIHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L + ERIT                                  
Sbjct: 606 LPQASRTARGKPIVNILPLEENERITA--------------------------------- 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                             IL V   + E  I + T  G   +  +     FA   S G+ 
Sbjct: 633 ------------------ILPVSEFSPEKFIFMATGDGTVKKTSLDQ---FANVRSNGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D +I + I    D D D  +        +           T+         + 
Sbjct: 672 AVNLREDDSLIGVDI---TDGDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADD 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G++V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GSVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E E  D
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESD 845



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 156/430 (36%), Gaps = 29/430 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAELMHILASTERLMEVIREELEAVR--DGFGDARRTEITAAIHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D+++LI   D            Y    Q  +  E +     G     ++ E     + +
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKY----QLLSDYEAQRRGGKGKSATKMKEEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
               D +   S      + ++  +     T R   IV  L   E+E             E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +R++D +  + I    + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLREDDSLIGVDITDGDSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +        ++      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGSVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +         ++    +    + ++    
Sbjct: 812 -SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEESDLPEGEELEGQEGEVSEAAPESTPDA 870

Query: 774 SLKNDSSVEG 783
            +  D+  + 
Sbjct: 871 EVDTDADEQE 880


>gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
 gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC
           23834]
          Length = 915

 Score =  867 bits (2240), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/898 (41%), Positives = 543/898 (60%), Gaps = 30/898 (3%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D    K    VS+ +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN
Sbjct: 6   DHRFAKETIPVSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWN 65

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K ARI G+V+GKYHPHG++A+YD + RMAQ +S+R +L++GQGNFGSVDGD  AA 
Sbjct: 66  SSYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAM 125

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K AH +L D+ +DTV+F PNYDGS QEP+V+  R+P++L NG  GIAVGMAT
Sbjct: 126 RYTEIRMAKIAHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMAT 185

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLG+ VD C+ ++ +PD  +DAL++ I+ PDFPTGA I G  G++  Y TGRG +
Sbjct: 186 NIPPHNLGDTVDACLQLLADPDTSIDALIDTIKAPDFPTGATIYGLAGVREGYRTGRGRV 245

Query: 249 VIRGVSHIEKT--SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           V+RG +HIE     G+RE I++ EIPYQVNKA ++EKI ELVREK +  I+DLRDESD+ 
Sbjct: 246 VMRGKTHIEPIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKS 305

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL  F+  R 
Sbjct: 306 GMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQILAEFLRHRR 365

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KAR   H+  G A+A++N+D ++++I+ S +   A+ +L+ R W +  
Sbjct: 366 EVVTRRTLFRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGL 425

Query: 427 IKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           + D++   D        +G            YLS++Q  AIL + L  LTGL +D I  +
Sbjct: 426 VGDMLSRTDLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILAD 485

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
             ++  +I + LDIL+   R+  II  EL+ +K     PRR+ I     D+ DED I   
Sbjct: 486 YKTIMAQIIDFLDILAKPERITQIIHDELIEIKTNFGDPRRSEINPFGGDIADEDLIPPR 545

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  ++ F++ G
Sbjct: 546 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG 605

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             +  KV++LP G   +RG+ + N++ L++ E+++ I+P  +      + YV FAT  G 
Sbjct: 606 RCHWIKVYKLPEGGRNSRGRPINNVIQLDENEKVSAILPVRDFP---EDEYVFFATAMGV 662

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++ +LS F  +++ G  A+ L   D ++ V   +  NDI+L + LG+ +RF       +
Sbjct: 663 VKKVQLSAFKNVSKVGIKAIALKEGDSLVGVARTSGRNDIMLFSNLGKAIRFNE-----Y 717

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R+S          GD   +       D + +      KH        SG    +   +
Sbjct: 718 WERSSD-----DEETGDDNDTEISGSQEDDNAESAPISGKHGVRPSGRGSGGLRGMRLPE 772

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N   V          E +  E  +LT +  G+GKRT    +   N+ G+G  A +  + N
Sbjct: 773 NGRIVSLI---TFAPECEQSELQVLTATANGYGKRTPIASYSRKNKGGQGNIAINTGERN 829

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             G LVA   V+++D ++L++  G LIR  V +IR   RA  GV + +  + E +VS+
Sbjct: 830 --GDLVAATLVSESDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSL 885



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/411 (15%), Positives = 143/411 (34%), Gaps = 51/411 (12%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DE++ I     +P  +            D+    +++   ++  G   T   ++ Q +  
Sbjct: 512 DELIEIKTNFGDPRRSEINPFGGDIADEDLIPPREMVVTLTHG-GYIKTQPTTDYQAQRR 570

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR- 516
                        D I     +   +   C             IK   L         R 
Sbjct: 571 GGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG----RCHWIKVYKLPEGGRNSRGRP 626

Query: 517 -----RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
                +    E +  +        ++ V   + +G VK+V LS ++   + G     + +
Sbjct: 627 INNVIQLDENEKVSAILPVRDFPEDEYVFFATAMGVVKKVQLSAFKNVSKVG--IKAIAL 684

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFV-----YKEKVWRLPIG----------------- 609
           ++ D +  +   S    ++ FS+LG       Y E+                        
Sbjct: 685 KEGDSLVGVARTSGRNDIMLFSNLGKAIRFNEYWERSSDDEETGDDNDTEISGSQEDDNA 744

Query: 610 -----------SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
                       P  RG   +  + L +  RI +++ F   E   + L V+ AT +G  +
Sbjct: 745 ESAPISGKHGVRPSGRGSGGLRGMRLPENGRIVSLITFAP-ECEQSELQVLTATANGYGK 803

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  ++ + + N+ G+  + +++ +     ++    ++ +D++L T  G  +R  +  IR 
Sbjct: 804 RTPIASYSRKNKGGQGNIAINTGERNGDLVAATLVSESDDLMLITSGGVLIRTKVEQIRE 863

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             GR + GV+ I+L +G+ ++S+  V   + D  +         +  +   
Sbjct: 864 -TGRAAAGVKLINLDEGETLVSLERVAEEEEDEAQAAETQTSAESPSQEQG 913


>gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
 gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA]
          Length = 852

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/906 (40%), Positives = 562/906 (62%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL E++D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  +   ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 EAESTE 910
           E  + +
Sbjct: 822 ENSNAD 827



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 12/248 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  + G+ +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T  ND+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  DQ+ S+  V   + +  +        +         T    
Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSITNPDL 844

Query: 774 SLKNDSSV 781
             + +S  
Sbjct: 845 IAEANSEE 852


>gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323]
 gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
 gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4]
          Length = 829

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/905 (40%), Positives = 554/905 (61%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+IVV+E+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG    +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I+                                            
Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   DE
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817

Query: 906 AESTE 910
             + E
Sbjct: 818 EATDE 822


>gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14]
          Length = 849

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/907 (39%), Positives = 553/907 (60%), Gaps = 90/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ K+TVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +ID+   D     ++ ++EI++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   L+ +L+ ++ 
Sbjct: 302 NREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVDNQPKVMNLLEMLQYYLR 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E+VV RRT+Y LNKA++RAH+L GL IA+ N+DEV+RIIR S N + A+ EL++R   
Sbjct: 362 HQEDVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+VQ +AI+++RL  LTGL R+ I  E   L  +
Sbjct: 419 -----------------------FGLSDVQAQAIVDMRLRALTGLEREKIEAEYAELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+ +  LLG+IK+E+L + ++    RRT+I     D+  ED I RE++V+T++
Sbjct: 456 IEEYKAILADKKLLLGVIKKEILVIAEKYGDDRRTKIGFDEFDISMEDLIPRENVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +++Q RGGKG  G+   ++D++ +LFI ++H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSMDTFKSQNRGGKGIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT I+P  E E      Y+  AT+ G V++  + 
Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYE---EGKYLFMATEKGLVKKTPIQ 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   D+++ V+      DI L TK G C+RF  + +R   GR S+G
Sbjct: 633 DYANVRKTGLAAIVLREDDKLIEVKITDNTEDIFLVTKYGMCIRFNETDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L   D VI M I                                           
Sbjct: 692 VRGMNLTDNDVVIGMQI------------------------------------------- 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                     + + + +L VSE+G GKRT   +F   NR GKG++   +++  + G +V 
Sbjct: 709 ----------ESQGKDMLIVSERGMGKRTDMDEFTRQNRGGKGVKCYKITE--KTGNVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  V+++ +I++++ +G +IR+  ++I +  R T GV + +  +++ V SV ++R++   
Sbjct: 757 MKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKENDTVASVAKVRKASAE 816

Query: 904 DEAESTE 910
            + E  E
Sbjct: 817 IDGEEVE 823


>gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
 gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5]
          Length = 822

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMIGEVLTLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTEIE 817


>gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
 gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110]
          Length = 862

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/892 (41%), Positives = 537/892 (60%), Gaps = 62/892 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  + + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP++    L++II GPDFPTG  ILGR+GI +AY TGRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++T++PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR 
Sbjct: 244 RGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L  F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKEFLSVFLDFRI 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  +A+ EL+Q       
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L ++I +
Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II++EL  +K    TPRRT IV    ++ D D I  E  ++ ++  G
Sbjct: 458 LQDILARRERIEAIIEEELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++   ++D+D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+I+   E      ++++V  T  G +++  LS F 
Sbjct: 578 PSSSRTARGIPIVQMLPIPKDEKITSIVAVSEFT---EDVFLVMLTHKGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D++  V    +E+ I+L T+ G  + F      +R   GR + GV
Sbjct: 635 NIRTNGLIAISLGEGDQLRWVRLTREEDSIILGTRKGMAIHFHADNQQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD++ISM ++                        +  T  I     D  V  N
Sbjct: 694 KAMKLKKGDELISMDVLP-----------------------AQVTAGIADAAEDEDVLDN 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +EE  +E      +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++
Sbjct: 731 ETEELSEEETTAGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKF--KSKTDCLASL 788

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             VN  D++++VS++G +IR  V+ I + SRA  GV +     D+ + +V  
Sbjct: 789 HVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRLDSDDAIAAVAL 840


>gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2]
 gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 858

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   +                                          
Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida]
          Length = 874

 Score =  867 bits (2239), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/907 (42%), Positives = 548/907 (60%), Gaps = 70/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE +    +E I+VTEIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 246 AEIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RR
Sbjct: 306 ECKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W   ++  +++
Sbjct: 366 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 425

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             D   YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI
Sbjct: 426 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 485

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH
Sbjct: 486 AELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSH 545

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   L+ Y AQRRGGKG++   M+DEDF+  L + +TH ++L FS+ G +Y  KV+
Sbjct: 546 EGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVY 605

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++NIL L + ERIT I+P                             
Sbjct: 606 QLPLASRTARGKPIVNILPLEENERITAILP----------------------------- 636

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVG 723
                                 V+    +  + + T  G   + P++   R      S G
Sbjct: 637 ----------------------VKEYEADKFVFMATADGTVKKTPLTDFSRPR----SAG 670

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           +  ++L   D +I + I    D + D  +        +           T+         
Sbjct: 671 IIAVNLRNEDTLIGVDI---TDGNNDIMLFSKAGKVVRFNEGQVRAMGRTAAGVRGIKLA 727

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +   +  +LTV+E G+GKRT   ++   +R+ +G+ +  VS+ N  G++V 
Sbjct: 728 ESDNVVSLIVPHNDGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERN--GSVVG 785

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V + D+ +++++ GTL+R  V E+    R T+GV +  T ++E+VV ++RI E +  
Sbjct: 786 AVQVLEGDEFMMITNGGTLVRTRVREVSRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDED 845

Query: 904 DEAESTE 910
           D  E  E
Sbjct: 846 DIIEDAE 852



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 72/423 (17%), Positives = 152/423 (35%), Gaps = 29/423 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +++       ARR  +  + + 
Sbjct: 470 EHEKILDEYKALLEEIAELLHILSSAERLMEVIREELELVK--EQFNDARRTEITAATHD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D++DLI+  D            Y  +V T    + R  +     R    + +  L +  
Sbjct: 528 IDLEDLINQEDVVVTLSHEGYVKY--QVLTDYEAQRRGGKGKAATRMKDEDFIERLLVAN 585

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
                +  S    +  +K   L +     T R   IV  L   E+E             +
Sbjct: 586 THDTILCFSTRGRMYWLKVYQLPLASR--TARGKPIVNILPLEENERITAILPVKEYEAD 643

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             V   +  G VK+ PL+ +   R  G     V +R+ED +  + I   +  ++ FS  G
Sbjct: 644 KFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRNEDTLIGVDITDGNNDIMLFSKAG 701

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A G   I         ++             N+  V+  T++G 
Sbjct: 702 KVVRFNEGQVRAMGRTAAGVRGI---------KLAESDNVVSLIVPHNDGDVLTVTENGY 752

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L ++   +R+ +  + +        ++      + ++ ++ T  G  VR  +  +
Sbjct: 753 GKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITNGGTLVRTRVREV 812

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I   + ++V+ +  +   D D       +  +       +   +  +
Sbjct: 813 -SRVGRNTQGVTLIRTTEEEKVVGLQRIDEPDEDDIIEDAEITEVENTETPAADSEQGDS 871

Query: 774 SLK 776
           S +
Sbjct: 872 SEE 874


>gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108]
 gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108]
          Length = 809

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/894 (41%), Positives = 560/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++IVVTE+PY VNKA ++EKIAELV EKRI  I+D+RDESD++G R
Sbjct: 242 VRAKATIEQTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ +         
Sbjct: 362 VRRTKYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +EVQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+I  +   D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASDAMVKEIIKKEILEIKEKYKDERRTKIVQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R+EDFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREEDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +        Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +R   GR + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSNGYCVVFNENDVRSM-GRTAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G++V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGSIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D+D+I++ S +G  IR+ V+++ +  R T+GV +     D  +V S+ RI+  E
Sbjct: 756 DDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDSDNIKVSSIARIKVDE 809


>gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
 gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149]
          Length = 837

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/900 (39%), Positives = 549/900 (61%), Gaps = 90/900 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ K+TVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E++   V      + +N +  +D +++I++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R +++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S
Sbjct: 242 GRGKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++ 
Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKHYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LN+A +RAH+L GL IA+ N+DEV+RIIR S N +TA+ ELM R   
Sbjct: 362 HQEEVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMAR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+EVQ  AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FDLTEVQASAIVDMRLRALTGLEREKLEAEYEELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E+L + ++    RRT I     D+  ED I RE++V+T++
Sbjct: 456 IGELKAILADRKLLLGVIKKEILVISEKYGDERRTSIGFDEFDISMEDLIPRENVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            +GY+KR+ +  +++Q RGGKG  G+ + D+D++ +LFI +TH  ++FF++ G VY+ K 
Sbjct: 516 KMGYIKRMSMDTFKSQNRGGKGIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+IN+L L   E+IT ++P  E E   +  Y++ AT+ G V++  + 
Sbjct: 576 YEIPEASRTARGTAIINLLQLMPDEKITAMIPIREYE---DGQYLLMATEKGLVKKTPIK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   D+++ V+    E D++L TK G C+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAIVLREDDKLIEVKITDDEQDVILVTKYGMCIRFSEKDVRP-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L   D+VI M I                                           
Sbjct: 692 VRGMNLGDHDEVIGMQISDQG--------------------------------------- 712

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         +++L  SEKG GK T   +F   NR GKG++   +++  + G +V 
Sbjct: 713 --------------KYLLIASEKGMGKLTDMDEFTRQNRGGKGVKCYKITE--KTGDVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  V+++ +I++++ +G +IR+  ++I +  R T GV + +  ++E+V S+ ++R++   
Sbjct: 757 MKAVDEDSEIMMINTEGIVIRMKCSDISVYGRITSGVKLINLPENEKVASIAKVRKASAE 816


>gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
 gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483]
 gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4]
 gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f]
          Length = 858

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   +                                          
Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 829

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/905 (40%), Positives = 553/905 (61%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+IVV+E+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T LQ+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE++RIIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG    +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I+                                            
Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 709 ---------EPNSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++   DE
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKANDEDE 817

Query: 906 AESTE 910
             + E
Sbjct: 818 KSTDE 822


>gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
 gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597]
          Length = 822

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 557/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 843

 Score =  866 bits (2238), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/902 (39%), Positives = 537/902 (59%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    IT V+++ +M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K
Sbjct: 3   EELSGRITDVNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ K+TVDF+ NYDG+ +EP +L AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TG G+I+
Sbjct: 183 IPPHNLSEVISAIHILMNNEDATTADLMEAVPGPDFPTGGIVMGKSGIRKAYETGHGTII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G R
Sbjct: 243 LRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+   L  IL+ ++  +EEV+
Sbjct: 303 VVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLGLKEILQHYLVHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM           
Sbjct: 363 RRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLM----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ + +E N +   I +  D
Sbjct: 412 ---------------NNYSLSSKQAQAILDMRLVRLTGLEREKVEDEYNKVMAAITDYRD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+ R R+  II +ELL +++     RRT ++ G +   +++ ++ E+ V+ T++H GY+
Sbjct: 457 ILAHRERINEIIYKELLEIQERFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S ++ Q RGG+G  G+ + D+DF+  L   STH  +LFF++ G VY+ K + +P 
Sbjct: 517 KRMATSEFKTQNRGGRGIQGMGVHDDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDE--SSWNNLYVVFATKHGNVRRNKLSDFI 666
            S  A+G  +IN+L ++ GE I  ++    D       N Y+ F T +G  +R  +++F+
Sbjct: 577 YSRTAKGIPVINLLGISSGENIQAVINIGRDNGDEDNENRYLFFTTLNGVTKRTPVAEFL 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     E +I++ T  G  V F  + +R   GR++ GVRG
Sbjct: 637 NIRSNGLKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFKEADVRSM-GRSATGVRG 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  AI+                                             
Sbjct: 696 IRLRDEDYVVGSAILKP------------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  +L ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  +  
Sbjct: 713 ----------ESKVLVITEKGYGKQTPASEYPIKGRGGKGIKTANITEKN--GPLAGLVT 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V   + ++L++D+G +IR  VN +    RAT GV +  T ++ +V ++  + E+ + DE 
Sbjct: 761 VEGTEDVMLITDRGVMIRFDVNNVSTTGRATLGVHVIKTDENSKVATMAIVDEAPVDDEN 820

Query: 907 ES 908
           ++
Sbjct: 821 QT 822



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/235 (18%), Positives = 90/235 (38%), Gaps = 17/235 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G  KR P++ +   R  G     + +++ D V ++ I     +++  +  G+    K
Sbjct: 622 TLNGVTKRTPVAEFLNIRSNG--LKAISLKENDEVINVVITDGEQNIIIGTHNGYAVSFK 679

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   I +   +       + P            V+  T+ G  ++   
Sbjct: 680 EADVRSMGRSATGVRGIRLRDEDYVVGSAILKP---------ESKVLVITEKGYGKQTPA 730

Query: 663 SDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           S++  I   G   +K  +  E    +  + T     D++L T  G  +RF ++ +    G
Sbjct: 731 SEYP-IKGRGGKGIKTANITEKNGPLAGLVTVEGTEDVMLITDRGVMIRFDVNNV-STTG 788

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R ++GV  I   +  +V +MAIV  A  D + +       +A+   ++ +     
Sbjct: 789 RATLGVHVIKTDENSKVATMAIVDEAPVDDENQTQTPATEAAETESVTVEESSEE 843


>gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
 gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans]
          Length = 874

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/901 (39%), Positives = 518/901 (57%), Gaps = 77/901 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E   I  V I ++++ +YL Y+++VI+ RA+PD+RDGLKP  RRI++ M ++ +     
Sbjct: 2   SETTNIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSH 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I+G+  G YHPHG   +Y  L R+AQ W +R  LIEGQGNFGS+DGDPPAA RY
Sbjct: 62  FRKCAKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RLQK    +L +L KDTV+FR NYD + QEP V  AR+PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GEV D  +A+IDNPD+    L+E I+GPDFPTG  ILG  GI+  + TGRG I++
Sbjct: 182 PPHNIGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGTEGIREYFETGRGKIIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    D EQI++  IPYQ++ + ++E++ ELV++K+I  I+D+RDES R G R+
Sbjct: 242 RGETEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR   A V+ N LY+YT LQS F V  + L    P+   +  +L+ F+ FR EVV+
Sbjct: 302 VIQVKRNHDAQVVRNLLYKYTQLQSTFGVINLCLIDGVPQVVNMKEMLQNFIDFRHEVVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A++R H+L GL IA+ NLDEV+ +IR S  P  A   L ++          
Sbjct: 362 RRTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLTGL RD I  E   L I I    ++
Sbjct: 412 ----------------FGLSEIQAKAILDMRLQRLTGLERDKIETEYQELLIIIARLTEL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +  +   + +IK+E   ++D+    R T I+         ED I  E +VVT++H GYVK
Sbjct: 456 VEHKELRMNLIKEETAEIRDKFADKRLTTIIPAPAGSFNMEDLIADEMVVVTITHDGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y+ Q RGGKG S   +++EDF+  LF+ STH+ +L F+  G  Y  KV+ +P  
Sbjct: 516 RLPVDTYKVQARGGKGLSASNLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARGKA++N++ L +G+RI   +   +     N   +V  T++G V++  L+ F    
Sbjct: 576 SRTARGKAIVNLVKLAEGDRIKAFVTLKDFHPEQN---IVMCTRNGLVKKTPLTAFSHPR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G  A+KL   DE++    C   +DILL T  G+C RF  S IR    R S GV+GI L
Sbjct: 633 SIGIKAIKLREGDELIDARICEAGDDILLATHDGKCNRFSESEIRSMR-RFSQGVKGIRL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD VISM I                                             ++++
Sbjct: 692 RNGDYVISMTI-------------------------------------------ATAQDQ 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +  K     IL +SEKG+GKR+    + ++ R   G+     ++ N  G L A+  V D
Sbjct: 709 LENGKPNSSTILAISEKGYGKRSPISSYSVTRRGSMGVITLKTNERN--GYLAALMLVRD 766

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +D +++++  G +IR  V+EI +  R T GV + + A ++ V  +  +  SE  +E+   
Sbjct: 767 DDDLMIITQGGMIIRQRVSEISVVGRNTLGVRLINLAPNDVVRDISLV-HSEPDEESLDK 825

Query: 910 E 910
           E
Sbjct: 826 E 826



 Score = 81.4 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 94/238 (39%), Gaps = 7/238 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E  +V  +  G VK+ PL+ +   R  G     + +R+ D + D  I      +L  
Sbjct: 605 FHPEQNIVMCTRNGLVKKTPLTAFSHPRSIG--IKAIKLREGDELIDARICEAGDDILLA 662

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFA 651
           +  G   +     +      ++G   I + + +    +T      + E+   N+  ++  
Sbjct: 663 THDGKCNRFSESEIRSMRRFSQGVKGIRLRNGDYVISMTIATAQDQLENGKPNSSTILAI 722

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRF 708
           ++ G  +R+ +S +    R     + L + +    +        ++D+++ T+ G  +R 
Sbjct: 723 SEKGYGKRSPISSYSVTRRGSMGVITLKTNERNGYLAALMLVRDDDDLMIITQGGMIIRQ 782

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +S I    GRN++GVR I+LA  D V  +++V     +           +     + 
Sbjct: 783 RVSEI-SVVGRNTLGVRLINLAPNDVVRDISLVHSEPDEESLDKEVETLKAKPASNLE 839


>gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
 gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211]
          Length = 815

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/898 (40%), Positives = 549/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD PAA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ K+TVDF  NYD S +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R +
Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IDVKRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM R           
Sbjct: 362 RTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------YELSERQSQAILDMRLRRLTGLERDKIQSEYDDLMKLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  +K +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELEEIKRKFSDERRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQRRGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQDEFTAQRRGGRGIQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    +    ++ Y+ F T++G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINVQAE--HDDHSYLFFTTRYGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ TK+G  VRF  + +R   GR + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNM-GRAATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  +++                                                 
Sbjct: 693 TNDYVVGASVIS------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++EKG+GKRT + ++    R GKG++  ++++ N  G L  +  VN +
Sbjct: 705 -----DNQEVLVITEKGYGKRTLASEYATKGRGGKGMKTANITEKN--GPLAGLMAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + ++++++ G +IR  V  I    RAT GV +    K  ++V+   +      +  E 
Sbjct: 758 EDLMVITNTGVIIRTNVANISQTGRATLGVKVMRLDKGAQIVTFTSVAAENEKEVNEE 815


>gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
 gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49]
          Length = 840

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/898 (40%), Positives = 553/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++G+     +
Sbjct: 3   DGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+Q+ +  +L D+ K+TVD + N+D +  EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A ID+ +I +D LME I+ PDFPTG +I G  G+K+A+ TGRG +V+R
Sbjct: 183 PHNLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIYGYDGVKDAFHTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE I+V+EIPYQVNKA M++K A+LV EK+I  IA++RDESDR G R+V
Sbjct: 243 AKASFEEVQ-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+YLL KA +RAH+L GL IA  N+DEV+R+IR S N + AR  L++            
Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIE------------ 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E   L   I +  DIL
Sbjct: 410 --------------AFKLTEIQAKAIVEMRLRQLTGLEQDKLRAEYEELMKTIADYKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++ R + IIK+ELL V+ +    RR+ I     D+   D I  E +V+T+SH GY+KR 
Sbjct: 456 ANKERRMNIIKEELLEVQRKYGDDRRSVIEYAGGDVSITDLIPDEQVVLTISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGQKASATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEPDDKVMAFICTQDLKDEEYVNSRYVIMATKKGQVKKTPLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +    ++ ++L  K G+ +RF  S  R   GRN+ GVRGI L
Sbjct: 636 TNGINAITIKDDDELLEAKLTRGDSQVMLAVKSGKAIRFEESKTRPM-GRNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  +   +++                                         
Sbjct: 695 ADDNDEVVGMIAINDLESE----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VS+KG+GKR+S  D+RI+NR GKG++  +V++  + G LVA+  V 
Sbjct: 714 -----------ILVVSDKGYGKRSSIEDYRITNRGGKGVKTINVTE--KTGQLVAIKNVI 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D+D +++++  G  IR+ V+ +R+  RAT+GV +    +D+ + +V ++ + E   E 
Sbjct: 761 DSDDLMIINKSGIAIRMDVSSLRVMGRATQGVRLIKVREDDSIAAVAKVMKDENEVED 818


>gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
 gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9]
          Length = 817

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/898 (41%), Positives = 550/898 (61%), Gaps = 84/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S +N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI    E 
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEIDQVTED 816


>gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
 gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23]
          Length = 858

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 AKAEIESGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K+ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRRVMKEELLEVKAKYGDVRRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   +                                          
Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAGE 825


>gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A]
 gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A]
          Length = 855

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/905 (40%), Positives = 562/905 (62%), Gaps = 87/905 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  +   ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDE 905
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE
Sbjct: 762 TDENDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDE 821

Query: 906 AESTE 910
             +T+
Sbjct: 822 NSNTD 826



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 12/251 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  + G+ +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  DQ+ S+  V   +   DE          +         +  
Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTTNSDTN 844

Query: 774 SLKNDSSVEGN 784
           S     +    
Sbjct: 845 SDLTAEANSEE 855


>gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL]
 gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL]
          Length = 809

 Score =  866 bits (2237), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/894 (40%), Positives = 562/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTSIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++E++
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+QR         
Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +++Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTDIQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+ I +   D E+E+ I  ++ V+T++H GY+
Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R++DFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ + + E+IT  M   +        Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV  GR++ GV+G++
Sbjct: 632 TRAGKKAITLADDDSLVDVKLTSGSDEVVLVSSNGYCVVFNENDVRVM-GRSAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ M                                                  
Sbjct: 691 LEDGDFIVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYRVT--DKTGKIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I++ S +G  IR+ ++++ +  R T+GV +     ++ +V S+ RI+  E
Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIKVSSIARIKAEE 809


>gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
 gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47]
          Length = 809

 Score =  866 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/894 (40%), Positives = 563/894 (62%), Gaps = 88/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIAVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GI++AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYILDNENATLDDIMKIIKGPDFPTGGYIIGKKGIRDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I++TE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTSIEQTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++E++
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+QR         
Sbjct: 362 VRRTRYDLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++VQ +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FKFTDVQAQAILDMRLQRLTGLERQKIEEELAELIKMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+S + +  IIK+E+L +K++    RRT+ I +   D E+E+ I  ++ VVT++H GY+
Sbjct: 456 VLASEAMVKEIIKKEILEIKEKYKDERRTKIIQDEHEDFEEEELIQEQETVVTLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++Q+RGG+G +G+  R++DFV D+F+ +TH  +LFF+  G V++ + + +P 
Sbjct: 516 KRLPLDTYKSQKRGGRGITGISTREDDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS QA+G A++N++ +++ E+IT  M   +        Y++  TK+G +++  LS+F   
Sbjct: 576 GSRQAKGTAIVNLIQISKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEFENT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK A+ L   D ++ V+  +  ++++L +  G CV F  + +RV  GR + GV+G++
Sbjct: 632 TKAGKKAITLADDDSLVDVKLTSGNDEVVLVSGNGYCVVFNENDVRVM-GRLAQGVKGMT 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD ++ M                                                  
Sbjct: 691 LEEGDFIVGME------------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V +  VN
Sbjct: 702 ----KASDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIKMVN 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
           D D+I++ S +G  IR+ ++++ +  R T+GV +     ++ RV S+ RI+  E
Sbjct: 756 DEDEIMICSTEGIFIRLEMSQVPVQGRNTQGVKLMRIDGEDIRVSSIARIKAEE 809


>gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
 gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM
           18228]
          Length = 854

 Score =  866 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/905 (40%), Positives = 553/905 (61%), Gaps = 87/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF+ N+D + QEPVV+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG  I G +G+++AY TGRG +++
Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE      ++IVV EIPY VNK  ++E IA LV EK+I  I+ + DESDR+G R+
Sbjct: 242 RAKAEIESHPT-HDKIVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R EV++
Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIQLFVEHRHEVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R          
Sbjct: 361 RRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSEVQ RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FQLSEVQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +      +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LVNEELCKKVIKDELIEVKEKYGDKRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIDADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M  +                                             
Sbjct: 694 LDEDGQDEVIGMICIKDPLK---------------------------------------- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + I+ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  
Sbjct: 714 -----------ETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K ++++ SV ++  SE  +E
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEKRNDQIGSVCKVT-SETEEE 819

Query: 906 AESTE 910
               E
Sbjct: 820 GSVAE 824



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 106/250 (42%), Gaps = 12/250 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + + +  ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGNNEIVIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      A G   I  L  +  + +  ++   +         ++  +++G  
Sbjct: 671 AIRFHESAVREMGRTATGVRGIT-LDEDGQDEVIGMICIKDPL----KETIMVVSENGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I L K  DQ+ S+  V     +        +   A          +  
Sbjct: 786 IM-GRATQGVRLIDLEKRNDQIGSVCKVTSETEEEGSVAEGEETAPASDITPDIVPSDDM 844

Query: 774 SLKNDSSVEG 783
             + D + + 
Sbjct: 845 IQETDETDKN 854


>gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978]
          Length = 881

 Score =  866 bits (2236), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/878 (42%), Positives = 534/878 (60%), Gaps = 45/878 (5%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL DL KDTVD+
Sbjct: 61  YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             NYDGS + P VL  R PN+L+NG  GIAVGMATN+  HN+ EVV+ C+A  DNP+I +
Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIP 272
           + LME I GPDFPTG +I G++GI +AY TG+G + IRG  H E+     R  IV TEIP
Sbjct: 181 EGLMEYITGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEIP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++E+IAELV+EK++  I++LRDESD++G R+ I+LKRG +A+V++N L+  T 
Sbjct: 241 YQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLKRGENAEVVVNNLFLNTQ 300

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RRT + L KAR+R H+L GL +
Sbjct: 301 LENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEGLTV 360

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS--------- 443
           A+AN+DE++  I+ S NP  AR  L+   W    +  L++     S              
Sbjct: 361 ALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDPNRP 420

Query: 444 ----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               D    LS  Q  AILELRL RLTGL +D +  E   +  +I E   IL+  + L+G
Sbjct: 421 FGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILNDFNLLMG 480

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I++EL  V  +    RRT IVE  +D   ED I  E +V+TVS  GY K  PLS Y+AQ
Sbjct: 481 VIREELAQVLQQYGDARRTEIVESRVDFCREDLIPEEQVVLTVSQTGYAKTQPLSDYQAQ 540

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG+G+S   M+D+DF+  L + S H +VL F+++G VY+ KV+ +P  S  A+G+ ++
Sbjct: 541 RRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVPQASRGAKGRPIV 600

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L+  E +T I+P  E      N YV  AT  G V+R +L  F  I  +G  A++L+
Sbjct: 601 NLLPLDATETVTAILPLTEFP---ENHYVFMATASGTVKRVELEQFANIRSNGLRAIELN 657

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D ++ V        I+L +  G+ +RF  + +R   GR + GVRG+        +S A
Sbjct: 658 EEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAM-GRTAKGVRGMR-------VSFA 709

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
               ++ D D                     + +   +DS+    +S      +  +   
Sbjct: 710 SSTLSEEDADV------------------ENDDSDDNDDSADSSLVSRIVSLVVVPETGE 751

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  S  G+GKRT   DF    R GKG+ A   S+ N  G LV    +++  +++L+SD 
Sbjct: 752 VLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERN--GELVGAVSIDETKELLLISDG 809

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           GTL+R    E+ +  R  +GV +   +++E +V V  I
Sbjct: 810 GTLVRTRAAEVAMTGRNAQGVRLIRLSEEETLVGVVSI 847



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G VKRV L  +   R  G     + + +ED +  + I   +  ++ F
Sbjct: 620 FPENHYVFMATASGTVKRVELEQFANIRSNG--LRAIELNEEDTLIGVAITDGNQQIMLF 677

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALIN-------------------ILSLNQGERITTI 633
           S+ G   +     +      A+G   +                        +     + +
Sbjct: 678 SNEGKAIRFAETDVRAMGRTAKGVRGMRVSFASSTLSEEDADVENDDSDDNDDSADSSLV 737

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETC 690
                         V+ A+ +G  +R  ++DF    R   G IA+K      E++   + 
Sbjct: 738 SRIVSLVVVPETGEVLCASANGYGKRTPVNDFPTKKRGGKGVIAIKTSERNGELVGAVSI 797

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +  ++LL +  G  VR   + +    GRN+ GVR I L++ + ++ +  +   + + + 
Sbjct: 798 DETKELLLISDGGTLVRTRAAEV-AMTGRNAQGVRLIRLSEEETLVGVVSIEAVEDEEEL 856

Query: 751 RICYMKHMSAQRRLISGDTEEITSL 775
               +            + E+ +  
Sbjct: 857 LEGEVDTTETDSEEAVSNNEDTSEE 881


>gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
 gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755]
          Length = 840

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/908 (41%), Positives = 555/908 (61%), Gaps = 91/908 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             + +  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+  NK +
Sbjct: 3   NGEQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVDF  N+D + +EP VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G  A I+N DI+++ LM  I+ PDFPTG +I G  G+++A+ TGRG +V+R
Sbjct: 183 PHNLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGGIIYGYEGVRDAFMTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S +E+ +  RE I++TEIPYQVNKA M++K A+LV +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKSSVEEVN-GRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+ +  +V+LN L+++T+LQS FSVN +AL   +P+   L  I+  FV  R EVV+R
Sbjct: 302 YILKKDSLPNVVLNTLFKHTALQSTFSVNNIALVKGRPQMLNLKDIIYNFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKYLL KA +RAH+L GL IA  N+DEV+ +IR S N E AR +L++R           
Sbjct: 362 RTKYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E + L I I++  DIL
Sbjct: 411 ---------------FQLSEIQVKAIVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SS  R + II+ ELL +K++    RR+ I     D   ED I  E +V+T+SH GY+KR 
Sbjct: 456 SSEDRRMEIIQTELLEIKEKYGDDRRSEINMVGGDFSMEDMIPNESVVLTISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  Y+ Q RGG G+     RDEDF+  +F  + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 PLKEYKIQNRGGVGQKASTTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+++L+  +RI   +      +E   NN YV+  TK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLMNLDPDDRINAFILVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+LS      EN ++L  + G+ +RF    IR   GR + GV+GI+L
Sbjct: 636 INGINAISVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPM-GRGAAGVKGITL 694

Query: 730 -AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            ++ D+VI M  V +                                             
Sbjct: 695 ASEKDEVIGMICVKNP-------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGALV 842
                  +E+ +L VSEKG+GKRT   D      +RI+NR GKG++   +S+  + G LV
Sbjct: 711 -------QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISE--KTGQLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           A+  V+D D ++++   G  IR+ V++IR   R+T+GV + S   D+ + +V +I  +E 
Sbjct: 762 AMKTVHDEDDLMIIKKSGVAIRMSVSDIRTMGRSTQGVRLISLKGDDEIAAVAKII-NED 820

Query: 903 VDEAESTE 910
            DE E  +
Sbjct: 821 EDETEIND 828



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 103/258 (39%), Gaps = 19/258 (7%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R      + ++ +ED I     V+ V+  G VK+  L  Y   R  G   + + +RD D 
Sbjct: 593 RINAFILVENLSNEDYINN-HYVLMVTKKGQVKKTILEQYSRPRING--INAISVRDGDE 649

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +    +      V+     G   +   +      P  RG A +  ++L   +     M  
Sbjct: 650 LLSAVLTDGENQVMLGLRSGKALR---FEEKHIRPMGRGAAGVKGITLASEKDEVIGMIC 706

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLS--------DFIQINRSGKIAMKLDSRD-EILSV 687
            ++        V+  ++ G  +R  +                 G   + +  +  +++++
Sbjct: 707 VKNP---QEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKGVKTISISEKTGQLVAM 763

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +T   E+D+++  K G  +R  +S IR   GR++ GVR ISL   D++ ++A +++ D D
Sbjct: 764 KTVHDEDDLMIIKKSGVAIRMSVSDIRTM-GRSTQGVRLISLKGDDEIAAVAKIINEDED 822

Query: 748 YDERICYMKHMSAQRRLI 765
             E    +   + +    
Sbjct: 823 ETEINDDLDVTNGETTEE 840


>gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066]
 gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066]
 gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03]
          Length = 811

 Score =  865 bits (2235), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/893 (41%), Positives = 549/893 (61%), Gaps = 84/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDIVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S +N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI 
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   +Q +      +     RF ++       R S  +  + L      
Sbjct: 382 IALDHLDEVITIIRNSQTD---AEAQAELMARFELTE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ +    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 433 ERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADARRTELMVGEVVSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  +V+    +
Sbjct: 493 EDEDLIEEEDIVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D +  +++KG + R+   EI    R  KG   V +    + E + +V   +  E  D 
Sbjct: 550 THDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTVINAKSDEASDN 609


>gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6]
 gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6]
          Length = 822

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDESESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  S +R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSTVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 DGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM]
          Length = 841

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/904 (40%), Positives = 543/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  NKKY
Sbjct: 4   EGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           +K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYT
Sbjct: 64  LKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K +  +L DL K+TVDF+ N+D S QEP VL  + PN+LVNG  GIAVGMATN+ 
Sbjct: 124 EARLKKISDEILSDLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMA 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E VD   A IDN +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 184 PHNLSESVDAICAYIDNKNIEIDELMKYIIAPDFPTGGIIYGYDGVRDAFHTGRGRIVLR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+   +R  I+VTEIPY VNKA M+ + +ELV+E +I  I ++RDESDR+G RVV
Sbjct: 244 AKVAFEEIG-NRNAIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +P++  L  I+  FV  R E+V+R
Sbjct: 303 YELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVKGRPQQLNLKDIIVHFVEHRHEIVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KAR+RAH+L G          LD+ + IIR S  P+ A+  L+          
Sbjct: 363 RTQYELKKARERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAE-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q +AIL+LRLARLTG+  D IR+E  ++   I +  
Sbjct: 415 ------------------FELSDIQAQAILDLRLARLTGMELDKIRDEYKAIMDLINDLE 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL++ +R   IIK ELL VK++    RRT I     +M  ED I  E++V+T+SH GY+
Sbjct: 457 DILANEARCYQIIKDELLEVKEKYGDERRTEIDYSGGEMSIEDFIPNEEVVLTISHAGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  Y  +V+ +P 
Sbjct: 517 KRTLLSEYKTQSRGGVGNRAASTRDEDFLEYIVSATNHQYMLFFTEKGKCYWLRVFEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +   +  D      +YVV  TK+G +++  L  + 
Sbjct: 577 GSKTAKGRAIQNLINIEPDDKIKAYIRTNDLKDSEYVKQMYVVMITKNGTIKKTSLEAYS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G  A+++   D++L        ++I++ TK G+C+RFP    R   GR S+GVRG
Sbjct: 637 RPRTNGIHAIEIREDDQLLGARLTNGNSEIMIATKNGKCIRFPEEKARAV-GRTSIGVRG 695

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL   D+VI M +V   +                                         
Sbjct: 696 ISLEDNDEVIGMIVVNDME----------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+  
Sbjct: 715 ----------NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGQLIAIQS 762

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V D + +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++   + V++ 
Sbjct: 763 VVDGNDLMIINKSGVAIRMSVDNMRVMGRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDE 822

Query: 907 ESTE 910
           E  E
Sbjct: 823 EIEE 826



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 104/240 (43%), Gaps = 13/240 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V++  VV ++  G +K+  L  Y   R  G     + +R++D +    + + ++ ++  
Sbjct: 612 YVKQMYVVMITKNGTIKKTSLEAYSRPRTNG--IHAIEIREDDQLLGARLTNGNSEIMIA 669

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    +       + G   +  +SL   + +  ++   +      N  V+  +
Sbjct: 670 TKNGKCIRFPEEKARAVGRTSIG---VRGISLEDNDEVIGMIVVND----MENETVLVVS 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + D+   NR GK  + L+      +++++++    ND+++  K G  +R  
Sbjct: 723 EKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGQLIAIQSVVDGNDLMIINKSGVAIRMS 782

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RV  GRN+ GVR I+L   D++ ++A V       DE I      +      + + 
Sbjct: 783 VDNMRVM-GRNTQGVRLINLKNNDEIAAVAKVEAEKDVEDEEIEESNDEAVNPSEGNSEE 841


>gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
 gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2]
          Length = 845

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/894 (43%), Positives = 563/894 (62%), Gaps = 90/894 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++ +++ I  V I  EM+NS++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM  +G   +
Sbjct: 5   NDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLGFTPD 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCA   GEV+GKYHPHG+AA+YD++ RMAQD+SLR  L++G GNFGSVDGDPPAA 
Sbjct: 65  KAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDPPAAM 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  ++ D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 125 RYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP  NL EV+DG V VI+ P   +D L +II+GPDFPT  +I+G++GI++AY TGRG I
Sbjct: 185 NIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIVGKSGIRDAYRTGRGRI 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R V++IE+ S ++++IVVTE+PYQVNKA ++EKIA+LV+EKRI +I+DLRDESDR G 
Sbjct: 245 IMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDESDRTGM 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-----YKPERFTLIGILKAFVA 363
           R+VIELKR A+A+++LNQL+++T +Q  FSVNM+AL       ++P    L   +  +V 
Sbjct: 305 RIVIELKREANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQAIDHYVD 364

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++V+VRRT++ L+KA  RAH+L GL IA+ NLDEV+RIIR S N   A+  LM+R   
Sbjct: 365 HQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENLMER--- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     SE Q +AI+++RL RLT L R+ +  E   L  +
Sbjct: 422 -----------------------FSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAK 458

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IK   D+L++   +L IIK+EL  +K +    RRT+I+    D + ED I  +D V+T++
Sbjct: 459 IKYYKDVLANEFMVLDIIKEELGEIKGKFGDERRTKIIPDETDFDVEDLIEEQDSVITLT 518

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVKR+P   Y++QRRGGKG  G+  R+EDFV +LF  STH  ++FF++ G VY+ K 
Sbjct: 519 HFGYVKRLPTDTYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKT 578

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P    QA+G A++N+L L+Q E++TT++P  E +     +Y++ ATK+G V++  L 
Sbjct: 579 YEIPEAGRQAKGTAIVNLLQLDQEEKVTTVIPIKEYK---EGMYLILATKNGVVKKTDLM 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I + G  A+ L   DE++ V       DILL TK G  +RF    +R   GR S G
Sbjct: 636 EYDHIRKGGLTAVALRENDELIDVRLTDGTKDILLVTKNGMSIRFNEEDVRPL-GRVSQG 694

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L   D VI M + +   +                                     
Sbjct: 695 VRGIKLDDDDVVIGMGVFIEDTS------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L V+E+GFGKRT   ++++  R GKGI    V++  + G +  
Sbjct: 718 ----------------LLVVTERGFGKRTELEEYKVQTRGGKGILTYRVTE--KTGKIAG 759

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  VN+ D ++L+S  GT+IR+ VN+I +  RAT+GV +    +   +V + RI
Sbjct: 760 MKLVNEKDDVMLISSDGTIIRINVNDISVLGRATQGVTLMRMDESVYLVGIARI 813


>gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
 gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA]
          Length = 852

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/906 (40%), Positives = 561/906 (61%), Gaps = 88/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K    ++ DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  +   ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+V
Sbjct: 243 AKAEIETHTT-HDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +IK EL+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR 
Sbjct: 456 SNDELCKKVIKDELIEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NAKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDKVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +  GD+VI M  +   +A                                         
Sbjct: 695 DEDGGDEVIGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V
Sbjct: 714 ----------ESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI--RESEIVD 904
            D + +++++  G  IR+ V E+RI  RAT+GV + +  K ++++ SV ++   E EI D
Sbjct: 762 TDGNDLMIINKSGITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEEITD 821

Query: 905 EAESTE 910
           E  + +
Sbjct: 822 ENSNAD 827



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 12/248 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  + G+ +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T  ND+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDGNDLMIINKSGITIRLKVAEVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  DQ+ S+  V   + +  +        +         T    
Sbjct: 786 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEEITDENSNADFENITEGEGGSITNPDL 844

Query: 774 SLKNDSSV 781
             + +S  
Sbjct: 845 IAEANSEE 852


>gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311]
 gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311]
          Length = 811

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/893 (41%), Positives = 549/893 (61%), Gaps = 84/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLIALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S +N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-DNNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V       +I++ TK G  VRF    IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++Q +L ++EKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 ----TEDQEVLIITEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GNLAGIVTVSGD 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++D G +IR  V  I    R T+GV +       R+V+   +   EI 
Sbjct: 759 EDIMVITDTGVIIRTAVANISQTGRVTQGVKVMRLDDTARIVTFALVEPEEID 811



 Score = 93.3 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 100/240 (41%), Gaps = 22/240 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   +Q +      +     RF ++       R S  +  + L      
Sbjct: 382 IALDHLDEVITIIRNSQTD---AEAQAELMARFELTE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ +    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 433 ERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESKRKFADARRTELMVGEVVSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  +V+    +
Sbjct: 493 EDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D +  +++KG + R+   EI    R  KG   V +    + E + +V   +  E  D 
Sbjct: 550 THDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETIQTVINAKSDEASDN 609


>gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
 gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564]
          Length = 822

 Score =  865 bits (2234), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/894 (41%), Positives = 557/894 (62%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEE 811



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +     +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    + E + ++    ESE  D+
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGESIQTI-INVESERSDD 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
          Length = 822

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 552/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM             
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                        G   LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 409 -------------GKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S  GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSDKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 DGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTLATEYPTKGRGGKGMKTANVAEKN--GPLAGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +   E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVDAVEKEEVGTENE 817


>gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42]
          Length = 793

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/865 (42%), Positives = 532/865 (61%), Gaps = 86/865 (9%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +N++AL   +P+  +L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 301 QTSFGINLLALVDGQPKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LD V+ +IR S   E AR  L+++                            L+E Q
Sbjct: 361 LDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQ 394

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E  SL   I E  DIL++ +R+L II++EL  +K+  +
Sbjct: 395 AQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEARVLEIIREELNEIKERFN 454

Query: 514 TPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT IV      +EDED I RE++V+T++H GYVKR+P S YR+Q+RGGKG  G+   
Sbjct: 455 DERRTEIVTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTN 514

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           ++DFV  L   STH ++LFFS+ G VY+ K + +P     A+G  +IN+L + +GE I  
Sbjct: 515 EDDFVEHLISTSTHDTILFFSNKGKVYRSKGYEIPEYGRTAKGIPIINLLEVEKGEWINA 574

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P    +      Y+ F TK G  +R  LS F  I  +G IA+ L   DE+++V     
Sbjct: 575 IIPVSTFD---EEQYLFFTTKQGVSKRTALSQFANIRNNGLIALGLREDDELMAVRLTDG 631

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I++ TK G  +RFP   +R   GR + GV+GI+L   D V+ M I+           
Sbjct: 632 KKQIIIGTKNGLLIRFPEEDVRQM-GRTAAGVKGITLTDDDVVVGMEILEE--------- 681

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       +  +L V+E G+GKRT
Sbjct: 682 --------------------------------------------DSHVLIVTENGYGKRT 697

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
            + ++R+ +R GKG++   ++  N  G LV V      + +++++  G LIR+ +N+I  
Sbjct: 698 PASEYRVQSRGGKGLKTCKITDSN--GPLVTVKATKGEEDLMIITASGVLIRMDINDIST 755

Query: 873 ASRATKGVVIFSTAKDERVVSVERI 897
             R T+GV +   +  E V +V  +
Sbjct: 756 TGRVTQGVRLIRMSDQEHVATVALV 780


>gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii
           DSM 18315]
          Length = 869

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/904 (40%), Positives = 558/904 (61%), Gaps = 88/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   ++++  LM+ I+ PDFPTGA I G  G+K+A+ TGRG I++
Sbjct: 183 THNLSEVLDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGRGRIIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G+ E+I++TEIPY VNKA +++ IA+LV EKRI  I+++ DESDR G R+
Sbjct: 243 RGKAEIET-EGNHEKIIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P +  L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKLTALQSSFSVNNIALVNGRPRQLNLKDLIKAFVDHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P  A   LM+R          
Sbjct: 362 RRTKYELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q+RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSEIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK EL  +KD+    R+T IV    ++  ED    ++M++T+SH+GY+KR
Sbjct: 456 LENDDLCMKVIKDELKEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++L F++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ++G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNSKGRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++L+  + G+ +RF  +A+RV  GR + GVRG+
Sbjct: 636 PRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L     D+V+ M  +   +                                        
Sbjct: 695 TLDDDPNDEVVGMVCIKDKEK--------------------------------------- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + +L VSE+G+GKR++  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 716 ------------ETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V + + I++++  G  IR+ V+++ +  RAT+GV + +  K ++ + SV ++      +
Sbjct: 762 NVTEENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEE 821

Query: 905 EAES 908
            AE 
Sbjct: 822 IAEE 825



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 107/259 (41%), Gaps = 12/259 (4%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +K+  L  Y   R+ G   + + +R++D + ++ + + +  VL  +  G   + 
Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               + +    A G   +  L  +  + +  ++   +         V+  ++ G  +R+ 
Sbjct: 677 HENAVRVMGRTASGVRGMT-LDDDPNDEVVGMVCIKD----KEKETVLVVSEQGYGKRSN 731

Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + D+        G   + +  +  ++++++  T+ENDI++  K G  +R  +S + V  G
Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIINKSGITIRMKVSDLNVI-G 790

Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVR I+L K  D++ S+  VL    +        +            TE       
Sbjct: 791 RATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEEKAQREALEDGANHEHPTENTDFEDV 850

Query: 778 DSSVEGNISEERCQELKLK 796
            + +E N + +  +E   +
Sbjct: 851 SNDIESNENADDTEETTEE 869


>gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159]
 gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159]
          Length = 825

 Score =  864 bits (2233), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/893 (41%), Positives = 547/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  IL  ++  ++EV+VR
Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK EL  +K +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+    D+    + Y+ F T+ G V+R  +S F  I +
Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDDFH--DKYLFFTTRQGVVKRTSVSAFGNIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T LG  VRF  SA+R   GR + GV+G++L 
Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI    +  +                                              
Sbjct: 698 KNDYVIGADHIADSRN-------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LT++EKG+GK+T + ++    R GKGI+  +++  N  G L  +  VND+
Sbjct: 714 ---------VLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++D G +IR  V +I    R+  GV +    ++ ++V+   ++   I 
Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVKSEVIE 815



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 121/296 (40%), Gaps = 28/296 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  TK    +    +  +       + + L
Sbjct: 335 NMLAIEKGVPKILSLRQILDNYIDHQKEVIVRRTKFDKAKAESRAHIL-----EGLLIAL 389

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 390 DHLDEVITIIRNSETDTI---AQAELMSRFDLSE------RQSQAILDMRLRRLTGLERD 440

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 441 KIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDE 500

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR    +FR   R G+G++ T V+  + +  LV+    + +D
Sbjct: 501 DLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGVQGTGVNDDDFVRELVST---STHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            ++  +++G + R+   EI    R  KG   V +      E + ++  ++  +  D
Sbjct: 558 AMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDDGETIQTIINVKSDDFHD 613


>gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672]
          Length = 805

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/875 (42%), Positives = 540/875 (61%), Gaps = 87/875 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M +MG+  NK Y K AR+ G+V+GK+
Sbjct: 18  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPYKKSARVVGDVIGKF 77

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++A+YD L R+AQD+S+R  L++GQGNFGSVDGD  AA RYTE R+ K    LL D
Sbjct: 78  HPHGDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYTEVRMAKITDELLLD 137

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + KDTVDF PNYDGS +EP+VL  R PN+L+NG  GIAVGMATNIP HNLGEVVD  +  
Sbjct: 138 IDKDTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIPPHNLGEVVDALIHR 197

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           IDNP+  LD +++ I+GPDFPT  +++G + +K AY TGRG+I IR  + I++    +EQ
Sbjct: 198 IDNPESTLDDILKFIKGPDFPTAGILMGVSDLKTAYLTGRGAIKIRARAEIQQLKSGKEQ 257

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+TEIPYQVNK++++EKIAELVR+K IV I +LRDESDR G RVVIE+K+G   DVILN
Sbjct: 258 IVITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVVIEIKKGELPDVILN 317

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           QLY++T ++  F +N VAL   +P+   L+ IL  F+  R  +V RRTK+LL KA +R H
Sbjct: 318 QLYKFTQMEVTFGINTVALVNGRPQTLPLLKILDEFIGHRITIVTRRTKFLLRKAEERLH 377

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L GL  AV N+DEV+ II+ S + + A+ +L+ R                         
Sbjct: 378 ILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDR------------------------- 412

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
               S++Q  AIL+++L +LTGL  + +  E       I+    IL++   L+GIIK EL
Sbjct: 413 -FSFSDLQVSAILDMKLQKLTGLEIEKLVEEYKETLKNIEYYKSILNNHQILMGIIKDEL 471

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           L +KD+    RRT IV    ++  ED I   +MVVT+++ GY+KR PLS + +Q+RGGKG
Sbjct: 472 LEIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKG 531

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           +S  + + EDF+  L + S H+ +LFF++ G ++  KV+ LP  +P  RG+ + N+LS +
Sbjct: 532 KSATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLSFS 591

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           QGE I +++   + +    + Y+   TK+G V++  + +F     SG +AMKL   DE++
Sbjct: 592 QGEYIASVVTLSDLDH---DKYIFMCTKYGIVKKTAVEEFKSGR-SGIVAMKLRENDELV 647

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           S    T  ++I + T+ G+ ++F    +R   GR + GVRGI+L + D V+SM ++  A 
Sbjct: 648 STVITTDNDNITIATRNGKTIQFESKEVRDM-GRTATGVRGITLEEDDYVVSMEVLTGA- 705

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                                FILTV+ 
Sbjct: 706 ----------------------------------------------------PFILTVTS 713

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+GK +   D+RI +R GKG++ + V+   + G +V    V   D ++L+S  G +IR+
Sbjct: 714 NGYGKCSLVSDYRIQSRGGKGLKLSKVTP--KTGPIVGAKQVKLEDDVMLMSKTGKIIRI 771

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            V++I +  R T+GV + S A DE +VS   ++E 
Sbjct: 772 AVSDIPVLGRDTQGVKLMSVADDE-IVSFAIVKEE 805



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 64/189 (33%), Gaps = 56/189 (29%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR----- 822
           + ++  + K  + +  + +E   ++L    + ++T++ +G+ KRT    F    R     
Sbjct: 473 EIKDKYADKRRTEIVYDHNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKGK 532

Query: 823 ---------------------------------------------SGKG---IRATDVSK 834
                                                          +G         S+
Sbjct: 533 SATLSKGEDFIETLIVTSNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLSFSQ 592

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              I ++V +  ++ +  I + +  G + +  V E + + R+  G+V     +++ +VS 
Sbjct: 593 GEYIASVVTLSDLDHDKYIFMCTKYGIVKKTAVEEFK-SGRS--GIVAMKLRENDELVST 649

Query: 895 ERIRESEIV 903
               +++ +
Sbjct: 650 VITTDNDNI 658


>gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
 gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           cristatus ATCC 51100]
          Length = 816

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/889 (40%), Positives = 546/889 (61%), Gaps = 85/889 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D S  +N Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGETIQTIINVQQDSS--DNSYLFFTTRLGVVKRTSVTEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+   ++                                                 
Sbjct: 693 DGDQVVGAGVI------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L ++EKG+GKRT + ++    R GKGI+  +++  N  G L  +  V   
Sbjct: 704 ----TEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GPLAGLMTVTGE 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + ++++++ G +IR  V  I    R+T GV +    ++ ++V+   +  
Sbjct: 758 EDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRLDQNAQIVTFTTVAP 806



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 97/238 (40%), Gaps = 22/238 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRNSETD---AEAQAELMAKFELSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDELIALIADLADILAKPERVVAIIKEELDEVKRKFADDRRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR +  +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGVQGTGVKDDDFVKELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            +D+++  ++KG + R+   EI    R  KG   V +    + E + ++  +++    
Sbjct: 550 THDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGETIQTIINVQQDSSD 607


>gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG]
 gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG]
          Length = 870

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E     ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHE--GDNDDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R   GR + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I+                                              
Sbjct: 693 RLRDHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++D+D + ++ + S   
Sbjct: 603 NVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNG--LIALNLKDQDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVAFKEQDVRSMGRTATGVRGI---------RLRDHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++  I   G   +K  +  E    +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYP-IKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I  +    GR ++GVR I +    +V +MA V     D D+     +    Q  
Sbjct: 771 VMIRFNIQNV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAG 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                 +        ++ E         E      
Sbjct: 830 PTDAHAQPADGQYAGNADEQVNKLLDRSETDKPAP 864


>gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143]
 gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143]
          Length = 827

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 556/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKR+  I  +RDES+R+G R V
Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 307 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 367 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 416 ---------------FRLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
               R+  IIK+EL  VK +    RRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 461 VKPERVAQIIKEELDEVKRKFGDKRRTELMVGEVLTLEDEDLIEETDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 521 LDQGEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 581 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GVRG++L 
Sbjct: 639 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVRGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 698 EGDTVVGASVITD----------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 711 ------QDEVLIITEKGYGKRTLATEYPTKCRGGKGMKTANVAEKN--GPLAGLLTVKGD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD---EAE 907
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +   E E
Sbjct: 763 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVRTEIE 822

Query: 908 ST 909
           + 
Sbjct: 823 TE 824


>gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72]
 gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E]
          Length = 888

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/918 (40%), Positives = 551/918 (60%), Gaps = 58/918 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+
Sbjct: 2   SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  
Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG
Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241

Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G
Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+E
Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +
Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421

Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472
             ++D     S                         LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED 
Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F
Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT
Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +
Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR  + R + GVRG+                                        + E +
Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATIDEEELL 747

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++ S +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   
Sbjct: 748 DEDGDEISDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V
Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865

Query: 893 SVERIRESEIVDEAESTE 910
            +  +   +  DE E +E
Sbjct: 866 GMACVEHDD--DEIEESE 881


>gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
 gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748]
          Length = 823

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/905 (41%), Positives = 543/905 (60%), Gaps = 84/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ ++ LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK+EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKEELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++   + E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERIHEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF  S +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVSVTTGNQDILIGTKLGIAIRFSESDVRLMK-RAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLNTGDVVVGAGVLNADE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  +EI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818

Query: 904 DEAES 908
           DE   
Sbjct: 819 DEEAE 823


>gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
 gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC
           27755]
          Length = 846

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/896 (41%), Positives = 549/896 (61%), Gaps = 90/896 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKSARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+D  V +IDN      +  ++ ++EII+GPDFPTG  ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D+S
Sbjct: 242 GRGKIRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G R+VIEL++  +A+V+LNQLY++T LQ  F V M+AL G +P+   ++ +L  ++ 
Sbjct: 302 SREGMRIVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLALVGKQPKVMNILELLGYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E+VV RRTKY LNKA++RAH+L GL IA+ N+DEV+RIIR S   + A+ ELM++   
Sbjct: 362 HQEDVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEK--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L +VQ +AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FELDDVQAQAIVDMRLRALTGLEREKLEKEYAELMAQ 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+    IL+    LLG+I++E+L +KD+    RRT I     D+  ED I +E++V+T++
Sbjct: 456 IERLEAILADEKLLLGVIREEILVIKDKYGDDRRTSIGFDEYDISMEDLIPKENIVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    ++AQ RGGKG  G+   DED+V +LF+ +TH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSDDTFKAQNRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG A+IN+L L  GE+IT ++P        +  Y++ ATK G V++  L 
Sbjct: 576 YEIPEASRTSRGTAIINLLQLMPGEKITAVIPIDYYR---DQDYLIMATKKGLVKKTSLR 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +++ + ++G  A+ L   DE++ V+      +I+L TK GQC+RF  + +R   GRNS+G
Sbjct: 633 EYMNVRKTGLAAITLRDEDELIEVKFTDNNQEIILATKYGQCIRFNETDVRA-TGRNSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+LA  D+VI M +V                                          
Sbjct: 692 VRGINLADRDEVIGMQLVTQGHD------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L VSEKG GKRT  ++F   NR GKG++   +++  + G ++ 
Sbjct: 715 ----------------LLIVSEKGMGKRTDIHEFTAQNRGGKGVKCYKITE--KTGNVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +  V+++D+I++++  G +IR+  + I +  R T GV + +    E V S+ ++R+
Sbjct: 757 IKAVDEDDEIMIINTDGIIIRMLCSGISVLGRITSGVKLINLKDKETVASIAKVRD 812


>gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4]
 gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1]
 gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7]
 gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1]
          Length = 888

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/918 (40%), Positives = 551/918 (60%), Gaps = 58/918 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+
Sbjct: 2   SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  
Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG
Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241

Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G
Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+E
Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +
Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421

Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472
             ++D     S                         LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED 
Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F
Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT
Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +
Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR  + R + GVRG+                                      + + E +
Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATTDEEELL 747

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   
Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V
Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865

Query: 893 SVERIRESEIVDEAESTE 910
            +  +   +  DE E +E
Sbjct: 866 GMACVEHDD--DEIEESE 881


>gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
 gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588]
          Length = 859

 Score =  864 bits (2232), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/912 (41%), Positives = 555/912 (60%), Gaps = 88/912 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+    + +++  I  ++I ++M+ +Y+ Y+++VI+GRA+PD+RDGLKPVHRR+LFGM
Sbjct: 1   MSENT---ENQQDGRIIQINIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G   NK Y K ARI GEVMGK+HPHG+A+IYD + RMAQ WSLR +L++GQGNFGSV
Sbjct: 58  NELGNNSNKPYKKSARIVGEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RLQ+ A  +L+D+ K+TVDF  N+D + +EP VL  R PN+L+NG  
Sbjct: 118 DGDMPAAMRYTEIRLQRMAEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNI  HNL EVVDG +A IDN DI ++ L++ ++ PDFPTG +I G  G+K  
Sbjct: 178 GIAVGMATNIMPHNLSEVVDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIYGYEGVKQG 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG +V+RG  ++E +   RE++V+ E+PYQ+NKAA+ +KIA+L  +K I  I++ R
Sbjct: 238 FETGRGRVVVRGKVNVETSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEAR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VI+LKR A A+V++NQLY+Y+ LQ+ + +N VAL   +P    L  +L  
Sbjct: 298 DESDRDGMRLVIDLKREAIANVVINQLYKYSELQTSYGINNVALVKGRPRVLNLKDMLSE 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV FR EVVVRRT++ L KA ++AH+L G  IA+ +LDEV+ +IR S  PE A+  LM R
Sbjct: 358 FVDFRHEVVVRRTRFDLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILELRL RLTG+ RD I+ E + +
Sbjct: 418 --------------------------FELSEIQSKAILELRLQRLTGMERDKIKEEYDEV 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I    +ILS       IIK EL  VK      R+T I     +M  ED I  ED+V+
Sbjct: 452 MKLIAYLKEILSDEGLRFKIIKDELEDVKKRFGDERKTEIQYLASEMRMEDIIAEEDVVI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR     YR Q+RGG+G  G   R+ED++  LF+ STH ++LFF+  G  Y 
Sbjct: 512 TISHLGYIKRTSAYDYRQQKRGGRGALGGKTREEDYIEHLFVASTHHTMLFFTEKGRCYW 571

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            KV+ +P G    +G+A+ N+++L   ++I  I+   +  D+   ++ Y+V  T +G ++
Sbjct: 572 LKVYEIPEGEKSGKGRAIQNLINLPTDDKIRAIIDIKDLGDKEFISSHYIVLCTANGIIK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L DF +  ++G  A+ ++  D++L  +     + I++  K G+ +RFP + +R   G
Sbjct: 632 KTLLEDFSRPRQNGVNAITINEGDQLLEAKLTNGNSQIMMAIKSGRAIRFPENTVRD-TG 690

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R ++GVRGI +    D+V+ M  V                                    
Sbjct: 691 RGAIGVRGIEVDNDKDEVVGMICVNK---------------------------------- 716

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                           + + + +L VSEKGFGKRT   ++RI+NR GKG++  ++++  +
Sbjct: 717 ----------------EDETRTVLVVSEKGFGKRTDIEEYRITNRGGKGVKTINITE--K 758

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G+L+A+  V + D +++    G  IR+ V +IR A RAT+GV +      + + +V R+
Sbjct: 759 TGSLIAILDVTEKDDLMITCKSGITIRMAVADIREAGRATQGVRLIRLDDSDEIAAVARL 818

Query: 898 RESEI---VDEA 906
            E E     +EA
Sbjct: 819 DEQEEQRLDEEA 830


>gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 949

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/928 (38%), Positives = 549/928 (59%), Gaps = 80/928 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++  +  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+    
Sbjct: 41  EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 100

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R  L +GQGNFGSVDGD  AA R
Sbjct: 101 NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 160

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG  GIAVGMAT 
Sbjct: 161 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 220

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  VA ID+PDI++D LM+ +  PDFPTG +I G  G+  AY TGRG +V
Sbjct: 221 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 280

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ +VVTE+PYQVNK+  +E+IA+ VR++RI  IADLRDESDR G R
Sbjct: 281 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA+A+++ NQ+Y+++ LQ  F VNMVAL G +P+  TL   ++ +V  R E+V
Sbjct: 341 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+  TAR+ L    +  +   D
Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460

Query: 430 LIDLIDDSSYTIGS-----------------------DGTMYLSEVQTRAILELRLARLT 466
            +  I+      G                        D   +L+E Q  AIL LRL+RLT
Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-L 525
           GL R+ I  E   +  +I+E   IL+SR R + +IK+ELL+VK+  D  RRT I      
Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 580

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I R+ +VVT+++ G  KR P+  YR Q RGG G  G   R++DF+  L++  +
Sbjct: 581 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 640

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDES 641
           H  +L F+  G  +  + + +P G   A+G+++  ++ ++  +R+  ++       EDE+
Sbjct: 641 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 700

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             N+ YV+ AT+ G V++  L  + +   +G I +K+D  D+++       +N +++ + 
Sbjct: 701 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 760

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ V F     R   GRN+ GVRG+ L    +++ M  V  A  D              
Sbjct: 761 GGRAVHFDEGDARPM-GRNTRGVRGMELPGDQELVGMISVPPAMHD-------------- 805

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                              +  +L ++E G+GKRT+  D+R+  
Sbjct: 806 -----------------------------------DLDVLAIAEHGYGKRTALSDYRVQG 830

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R GKG+   + +     GALV++  V  ++ ++++++ G +IR  V EI    R T+GV 
Sbjct: 831 RGGKGLITLNRTDR--TGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNTQGVQ 888

Query: 882 IFSTAKDERVVSVERIRESEIVDEAEST 909
           +      + +  V R+ +++  +  + T
Sbjct: 889 VIDLKDGDAIADVTRVADTDEPEADDGT 916



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 11/275 (4%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R   ++    +  +++  +    V+  +  G VK+  L  Y   R  G     +   
Sbjct: 681 PDDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEG 740

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+     L   +   + +  +S G   +   +      P  R    +  + L   + +  
Sbjct: 741 DQLIEASL---TGGDNTVVVASSGG--RAVHFDEGDARPMGRNTRGVRGMELPGDQELVG 795

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVET 689
           ++  P   +  ++L V+   +HG  +R  LSD+    R GK  + L+  D     +S++ 
Sbjct: 796 MISVP--PAMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKG 853

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              + D+++ T+ G  +R  +  I    GRN+ GV+ I L  GD +  +  V   D    
Sbjct: 854 VLGDEDLMVITEGGIMIRTRVGEISTM-GRNTQGVQVIDLKDGDAIADVTRVADTDEPEA 912

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +               + + E      +D+  + +
Sbjct: 913 DDGTADDEAPDADAAAAANGEMDDDAASDAVEDTS 947


>gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8]
          Length = 888

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/918 (40%), Positives = 551/918 (60%), Gaps = 58/918 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+
Sbjct: 2   SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  
Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG
Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241

Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G
Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+E
Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +
Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421

Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472
             ++D     S                         LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED 
Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F
Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT
Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDLK--DENSFVFFAT 659

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +
Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR  + R + GVRG+                                      + + E +
Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATTDEEELL 747

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   
Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V
Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865

Query: 893 SVERIRESEIVDEAESTE 910
            +  +   +  DE E +E
Sbjct: 866 GMACVEHDD--DEIEESE 881


>gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
 gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 831

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/893 (40%), Positives = 549/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +EKRI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+   +++    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                                 
Sbjct: 693 EEDWVVGASRIN------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 -----DNQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+   ++  +  
Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 103/239 (43%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---IIAQAELMSRFDLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +  +  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S  G+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            +D ++  ++ G + R+   EI    RA KG+ + +       E + ++   ++ +I+D
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTIINAKKEDILD 608


>gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
 gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A
 gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum
           ATCC 824]
 gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018]
          Length = 830

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/899 (39%), Positives = 543/899 (60%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I+ EM+  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++Y AL R+AQD++LR  +++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  ++ D+GK+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG   +IDNP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG I +R
Sbjct: 183 PHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE     +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+V
Sbjct: 243 AKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+ A++++ILNQLY++T LQ  F +NM+AL   +PE   L  IL+ ++ F+E+V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA+ ++DEV+ +IR S   + A+  LM +           
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+L+L RLTGL R+ I +E N L   I E   IL
Sbjct: 412 ---------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +++L II+ EL  +K +    R+T I     D++ ED I  E++V+T++H GY+KR+
Sbjct: 457 ADENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +Q+RGG+G   +  +++DFV ++FI STH ++LFF++ G +YK K +++P    
Sbjct: 517 NADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L L+  E+I  ++   E +      ++V  TK G +++  +  +  I +S
Sbjct: 577 AAKGTNVVNLLQLDPNEKIQAVISIKEFD---EESFLVMCTKKGIIKKTVVGMYKNIRKS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE++SV     ++DI++ T  G  +RF    +R   GRN++GV+GI+L +
Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +                                                   
Sbjct: 693 DDFVVGMEVPNQESDVLVVSENGFGKR--------------------------------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                               T   +++  +R GKG+    VS  ++ G LV V  V D D
Sbjct: 720 --------------------THVGEYKCQHRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++L+++ G  IR+ V++I   SR   GV +     DE+V+++ +I + +     +S E
Sbjct: 758 ELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSEE 816


>gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
 gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001]
          Length = 870

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/890 (41%), Positives = 542/890 (60%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E     ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHE--GDNDDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R   GR + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I+                                              
Sbjct: 693 RLRDHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++D+D + ++ + S   
Sbjct: 603 NVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNG--LIALNLKDQDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVAFKEQDVRSMGRTATGVRGI---------RLRDHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++  I   G   +K  +  E    +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYP-IKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I  +    GR ++GVR I +    +V +MA V     D D+     +    Q  
Sbjct: 771 VMIRFNIQNV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAG 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                 +        ++ E         E      
Sbjct: 830 PNDSHEQPTDGQYAGNADEQVNKLLDRAETDKPAP 864


>gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1]
 gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4]
          Length = 874

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/906 (40%), Positives = 547/906 (60%), Gaps = 91/906 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+GKDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +IDN      D D++ L+ I++GPDFPTG +ILG  GI  AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGTAGINEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R ++ IE     + +IVVTE+PY VNKA ++EKIAELVR+K++  I DLRDES
Sbjct: 242 GRGKVRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DRQG R+ IEL+R  + +V+LN LY++T LQ  F V M+AL   +P+   L  +LK ++ 
Sbjct: 302 DRQGMRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLALVNNEPKVLNLYDMLKYYLI 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N + A+  LM+R   
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ +  E   L   
Sbjct: 419 -----------------------FSLSDAQSQAIVDMRLRALTGLEREKLEAEYAELMDR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ + +LLG+I+ E+L + D+    RRT I     D+  ED I   + V+T++
Sbjct: 456 IAELRAILADKKKLLGVIRTEILLIADKYGDDRRTSIGFDEYDISMEDLIPVTNTVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ L  +RAQ RGGKG  G+   D+D++ +L + ++H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSLDNFRAQNRGGKGIKGMETIDDDYIEELLMTTSHHYMMFFTNTGRVYRIKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A++N+L L  GE+IT ++P  E        ++  ATK G V++  ++
Sbjct: 576 YEIPEASRTARGTAIVNLLQLQPGEKITAVIPIREYT---EGHFLFMATKKGIVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+      D+ L TK GQC+RF  + +R   GR S+G
Sbjct: 633 DYANVRKTGLAAISLREDDELIEVKKTDNNQDVFLVTKYGQCIRFKETDVR-KTGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G++L  GD+VI M +    DA                                     
Sbjct: 692 VIGMNLTDGDEVIGMQMQSQGDA------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++ VSEKG GK T   +F   NR GKG++   +++  + G +V 
Sbjct: 715 ----------------LMIVSEKGLGKCTLISEFTTQNRGGKGVKCYKITE--KTGNIVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EI 902
           V  VN +++++L++ +G +IR+ V++  +  R T GV + +  ++  V S+ ++RE   +
Sbjct: 757 VKAVNQDNELMLITTEGIIIRIKVSDTTLLGRITSGVKLINLDENVTVASIAKVREDKSL 816

Query: 903 VDEAES 908
           +D A++
Sbjct: 817 IDNADT 822


>gi|85708690|ref|ZP_01039756.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
 gi|85690224|gb|EAQ30227.1| DNA gyrase subunit A [Erythrobacter sp. NAP1]
          Length = 933

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 442/905 (48%), Positives = 598/905 (66%), Gaps = 24/905 (2%)

Query: 1   MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++       +      G   + I DEM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL
Sbjct: 1   MSDETDIIDPASPAPADGYDRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +          + YVK A+I G+VMG +HPHG+ AIYDALAR+ Q WS+R+ L++GQGNF
Sbjct: 61  YASKLGNFVAGRPYVKSAKIVGDVMGDFHPHGDGAIYDALARLTQPWSMRVPLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS D DPPA+ RYTE RL + +  LLDDL KDTVDF  NYDG  QEP VL AR+PN+LVN
Sbjct: 121 GSPDPDPPASMRYTEARLARVSDTLLDDLDKDTVDFVDNYDGRKQEPSVLPARFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G GGIAVGMATN+P HNLGEV+DGC+A ++NP I  + L+E I GPDFPT  +ILG +G 
Sbjct: 181 GAGGIAVGMATNVPPHNLGEVIDGCLAFMENPAITSEELIEYIPGPDFPTAPLILGTSGA 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K AY TGRGSI++R    IE   GDRE IV T IPYQV +A ++EKIAE  ++KRI  I+
Sbjct: 241 KAAYTTGRGSILMRCRHEIEPLRGDRESIVFTSIPYQVGRAGLVEKIAEAAKDKRIEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDES+R G R+VI+LKR A+A+V+LNQ++R+T  QS F  NM+A+ G +PE   L   
Sbjct: 301 DIRDESNRDGTRIVIDLKRDATAEVVLNQIWRHTPAQSGFPANMLAIRGGRPETLMLRDF 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++AF++FREEV+ RRTK+ LNKAR+RAH+L+GL +AV+NLDEVV IIR +PNP TAR  L
Sbjct: 361 IQAFISFREEVITRRTKFELNKARERAHILLGLVVAVSNLDEVVAIIRGAPNPATARERL 420

Query: 418 MQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           + + W   DI   I L++          GT  LS  Q +AIL+LRL RLT LGRD+I +E
Sbjct: 421 LTKEWPIGDIAQYIRLVEAIEPSADQEGGTYRLSTRQVKAILDLRLHRLTALGRDEIGDE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  +I+E L IL+ R +L  ++++EL  ++    TPR + I      ++DED I R+
Sbjct: 481 LKELAEKIEEFLAILADRVKLYEVMREELEEIRATYATPRISEIAPAWDGLDDEDLIERD 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           DMVVTV+  GY+KR PLS +RAQ RGGKGR+G+  +DED + ++F+ STH  VLFFS+ G
Sbjct: 541 DMVVTVTLDGYIKRTPLSTFRAQNRGGKGRAGMSTKDEDAIAEMFVTSTHNPVLFFSTAG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            VY+ KVW+LP G P  RG+ +IN+L  L+  E I T++P PEDE  W  L VVFAT  G
Sbjct: 601 KVYRLKVWKLPEGGPTTRGRPIINLLPALDTDETIRTVLPLPEDEDEWGALSVVFATAKG 660

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           NVRRN +  F  I  +GK AMK D    D ++ V      +D++L +K G+ +RF    +
Sbjct: 661 NVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAPSDDVMLASKSGKAIRFAAEDV 720

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R F  R S GVRG+ LA GD+V+S++ +       +ER  Y+K    +            
Sbjct: 721 REFTSRTSTGVRGMKLADGDEVVSLSTLGATGTTPEEREQYIKFAPWKG----------- 769

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
               +   + +++ ER   LK KEQFILTV   G+GK +SSY++R + R G+G+   D  
Sbjct: 770 ----EKEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGVVNIDNI 825

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G++VA F V   +Q++LV+D+  LIR+ +  +R+  R T GV +F+  K+E VVS
Sbjct: 826 DRN--GSVVASFVVQTGEQLMLVTDQAKLIRIGLESLRVMGRNTAGVRLFTVGKNEHVVS 883

Query: 894 VERIR 898
             +I 
Sbjct: 884 AVKID 888



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 102/295 (34%), Gaps = 39/295 (13%)

Query: 531 DCIVREDMVVTV-----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                ED    +     +  G V+R  +  +      GK         ED +  + +V+ 
Sbjct: 640 PLPEDEDEWGALSVVFATAKGNVRRNSMDAFTNIPSNGKFAMKFDDESEDRLIGVRLVAP 699

Query: 586 HTSVLFFSSLGFVYKEKVWRLPI-------GSPQARGKALINILSLN------------- 625
              V+  S  G   +     +         G    +      ++SL+             
Sbjct: 700 SDDVMLASKSGKAIRFAAEDVREFTSRTSTGVRGMKLADGDEVVSLSTLGATGTTPEERE 759

Query: 626 ----------QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
                     + E    + P   D       +++    +G  + +   ++ +  R G+  
Sbjct: 760 QYIKFAPWKGEKEGDPDLTPERYDALKEKEQFILTVCANGYGKVSSSYEYRKTGRGGQGV 819

Query: 676 MKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + +D+ D   SV           ++L T   + +R  + ++RV  GRN+ GVR  ++ K 
Sbjct: 820 VNIDNIDRNGSVVASFVVQTGEQLMLVTDQAKLIRIGLESLRVM-GRNTAGVRLFTVGKN 878

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           + V+S   +   +   +E    +     +RR    +T   T++ +D ++  +  E
Sbjct: 879 EHVVSAVKIDETEEPENEAEEAIVEEMVERRGGGDETTPDTTVHSDDNLGEDPPE 933


>gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
 gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           casseliflavus ATCC 12755]
          Length = 841

 Score =  864 bits (2231), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/891 (40%), Positives = 539/891 (60%), Gaps = 85/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI 
Sbjct: 183 IPPHNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R
Sbjct: 243 VRGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA VILN LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV
Sbjct: 303 IVIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++  NKA  RAH+L GL IA+ ++DE++ +IR S + + A+  +M+R         
Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I NE   L   I +  D
Sbjct: 414 -----------------FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+L II+ EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILANPQRVLEIIQTELQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV  S +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P 
Sbjct: 517 KRVAKSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNKGKVYKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  ERI  I+            Y+ F T+ G V+R  ++ F  I
Sbjct: 577 YGRAAKGIPVINLLGIDSSERIEAIIS--ASGGPQEGRYLFFTTRLGVVKRTSVTAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V     E+ +++ T  G  V F  + +R   GR + GVRGI 
Sbjct: 635 RANGLIAIGLRENDELVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+  A++                                               
Sbjct: 694 LRDGDYVVGAAVI----------------------------------------------- 706

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  ++  +L ++E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+
Sbjct: 707 ------TEDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             + I+++++KG LIR  V  +    RAT GV +     + +VV++  +  
Sbjct: 759 GEEDIMVITNKGVLIRFNVATVSQTGRATLGVRLMKMENNAKVVTMATVEP 809


>gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
 gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025]
          Length = 825

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/893 (41%), Positives = 546/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7   QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 67  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 127 EARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D     +DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 187 PHNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVMGKSGIHRAYDTGKGSIVLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  IL  ++  ++EV+VR
Sbjct: 307 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQILDNYIDHQKEVIVR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 367 RTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSR----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 416 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK EL  +K +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 461 AKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 520

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 521 LGQDEFRTQKRGGRGVQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYG 580

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+    D+    + Y+ F T+ G V+R  +S F  I +
Sbjct: 581 RTAKGLPIVNLLKLDDGETIQTIINVKSDDFH--DKYLFFTTRQGVVKRTSVSAFGNIRQ 638

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T LG  VRF  SA+R   GR + GV+G++L 
Sbjct: 639 NGLKALSLRDNDELINVLLTNGQEDIIIGTHLGYSVRFQESAVRNM-GRLATGVKGVNLR 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI                                                      
Sbjct: 698 KNDYVIGA---------------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +     + +LT++EKG+GK+T + ++    R GKGI+  +++  N  G L  +  VND+
Sbjct: 706 -DHIADNRNVLTITEKGYGKQTPASEYPTKGRGGKGIKTANITAKN--GPLAGLVTVNDD 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++D G +IR  V +I    R+  GV +    ++ ++V+   ++   I 
Sbjct: 763 EDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDENAKIVTFALVKSEVIE 815



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 121/296 (40%), Gaps = 28/296 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  TK    +    +  +       + + L
Sbjct: 335 NMLAIEKGVPKILSLRQILDNYIDHQKEVIVRRTKFDKAKAESRAHIL-----EGLLIAL 389

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 390 DHLDEVITIIRNSETDTI---AQAELMSRFDLSE------RQSQAILDMRLRRLTGLERD 440

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 441 KIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFADQRRTELMVGEVLSLEDE 500

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR    +FR   R G+G++ T V+  + +  LV+    + +D
Sbjct: 501 DLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRGVQGTGVNDDDFVRELVST---STHD 557

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            ++  +++G + R+   EI    R  KG   V +      E + ++  ++  +  D
Sbjct: 558 AMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDDGETIQTIINVKSDDFHD 613


>gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
 gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321]
          Length = 822

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/900 (40%), Positives = 557/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L +++KG+GKRT + ++    R GKG++   +++ N  G+L  +  V  +
Sbjct: 706 ------QDEVLIITDKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAAEKEEVGTENE 817


>gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
 gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J]
          Length = 837

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/899 (40%), Positives = 543/899 (60%), Gaps = 85/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE ++    V+ NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  TL  I+  ++  + EV+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILTLRQIIDNYIKHQIEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           ++  R+  II +E+  +K +    RRT ++ G +   +++ ++ E+ V +T S+ GY+KR
Sbjct: 456 ANPERVKAIIIEEMDEIKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITFSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEVPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I TI+            Y  F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEEETIQTII--KAKREDIEGKYFFFTTRQGLVKRTNASEFHNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+LG  VRF  S+IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLMTNGQEDIIIGTRLGYSVRFNESSIRQM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  A +                                                 
Sbjct: 693 DQDLVVGAARITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GK+T + ++    R GKGI+  +++  N  G +  +  V+  
Sbjct: 706 ------DQEVLIITENGYGKKTLASEYPTKGRGGKGIKTANITAKN--GPIAGLVTVSGQ 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + I+++++KG +IR  ++++    RAT GV +    +D ++V+   +      ++ E  
Sbjct: 758 EDIMIITNKGVIIRTHISDVSQTGRATLGVKVMRLDQDAKIVTFALVEAEAETEDIEPE 816


>gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113]
 gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113]
          Length = 846

 Score =  863 bits (2230), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/903 (42%), Positives = 537/903 (59%), Gaps = 71/903 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  + +  V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  LI+GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL AR PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+++ C+A+ID+P + +  LM  I GPDFPT  ++ G  GI+ AY TGRG IV
Sbjct: 182 IPPHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIRGIQEAYLTGRGRIV 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H+E      ++ I+VTE+PY VNKA +LEKI  LV++K+IV I  LRDESD+ G 
Sbjct: 242 MRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL+R    +V+LNQLY +T LQS+F +NMVAL   +P+   L   L+ F+  R+EV
Sbjct: 302 RMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEVFLRHRQEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAHVL GLAIA+ N+D ++ +I+ S +P  AR  L+ R W    + 
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D++     +S                  LS  Q +AILE+RL RLTGL +  I +E   +
Sbjct: 422 DMLQRAGAASSPPEELEAAYGLQRDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            I I E L+IL++  RL+ +I++EL+ + ++   PRRT I +  +D+  ED I  E++VV
Sbjct: 482 IIFISELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY 
Sbjct: 542 TLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KV+ LP GS  ARGK  +N+L L +GERI T++   E                      
Sbjct: 602 KKVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIRE---------------------- 639

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719
                                          ++  I + T LG   +  ++   R     
Sbjct: 640 -----------------------------FEKDKYIFMVTALGVVKKTSLADFSRPR--- 667

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S G+  + L +GDQ++   +         E + +       R           + +   
Sbjct: 668 -SSGIIALDLREGDQLVGADLTD----GEQEIMLFSSGGKVIRFSERDVRPLGRTARGVK 722

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +E          +      ILT +E G+GKRT+  ++R+  R GKGI +   +  N  G
Sbjct: 723 GMELPSKHRVIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGKGIISIRTTPRN--G 780

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           A+V    V   D+++L+S+ GTLIR PV+ I +  R T+GV + +  + ER+V +ERI E
Sbjct: 781 AVVGAVQVEKEDEVVLISNGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840

Query: 900 SEI 902
              
Sbjct: 841 DGE 843



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 6/161 (3%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           ++  E +   + + A  R    +  E  S    + ++ N  + R ++L  +E  ++T+S 
Sbjct: 486 SELLEILANPERLMAVIREELMEMLEQYSAPRRTEIQDNYVDLRLEDLIQEENVVVTLSH 545

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ K  +   +R   R GKG  AT + + + I  L   F  N +D ++  S +G +   
Sbjct: 546 SGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKL---FIANTHDTLLCFSSRGKVYWK 602

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            V E+   SR  +G   V +    + ER+ +V  IRE E  
Sbjct: 603 KVYELPQGSRIARGKPFVNLLPLEEGERINTVLSIREFEKD 643


>gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
 gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047]
          Length = 831

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/893 (40%), Positives = 550/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +EKRI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 ARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+   +++    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                                 
Sbjct: 693 EEDWVVGASRIN------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 705 -----DKQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+   ++  +  
Sbjct: 758 EDIMVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 103/239 (43%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---IIAQAELMSRFDLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +  +  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANPRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S  G+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            +D ++  ++ G + R+   EI    RA KG+ + +       E + ++   ++ +I+D
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTIINAKKEDILD 608


>gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169]
 gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1]
          Length = 888

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/918 (40%), Positives = 550/918 (59%), Gaps = 58/918 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+
Sbjct: 2   SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  
Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG
Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241

Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G
Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+E
Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +
Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421

Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472
             ++D     S                         LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED 
Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F
Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT
Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +
Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR  + R + GVRG+                                        + E +
Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLTTIDEEELL 747

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   
Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V
Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865

Query: 893 SVERIRESEIVDEAESTE 910
            +  +   +  DE E +E
Sbjct: 866 GMACVEHDD--DEIEESE 881


>gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
 gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27]
          Length = 846

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/903 (41%), Positives = 533/903 (59%), Gaps = 71/903 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  + +  V+I DEM++SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK
Sbjct: 2   DEIAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+AA+YDA+ RMAQ +S+R  LI+GQGNFGS+DGD PAA R
Sbjct: 62  PYKKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL DL K+TVDF PNYD S  EP VL  R PN+L NG  GIAVGMATN
Sbjct: 122 YTEVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++  C+A+ID+P + +  LM  I GPDFPT  ++ G  GI+ AY TGRG I 
Sbjct: 182 IPPHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGARGIQEAYLTGRGRIF 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  +H+E      ++ I+VTE+PY VNKA +LEKI  LV+EK+IV I  LRDESD+ G 
Sbjct: 242 MRARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL+R    +V+LNQLY +T LQS+F +NMVAL   +P+   L   L+AF+  R+EV
Sbjct: 302 RMVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQPQLLNLKLALEAFLRHRQEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+RAHVL GLAIA+AN+D ++ +I+ S +P  AR  L+ R W    + 
Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVI 421

Query: 429 DLIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D++      S                  LS  Q +AILE+RL RLTGL +  I +E   +
Sbjct: 422 DMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            I I   L+IL++  RL+ +I++E + ++++  TPRRT I +  +D+  ED I  E++VV
Sbjct: 482 IIFILGLLEILANPERLMAVIREEFMEMREQYSTPRRTEIQDNHVDLRLEDLIQEENVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K   L  YR+Q+RGGKG+S   M++EDF+  LFI +TH ++L FSS G VY 
Sbjct: 542 TLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCFSSRGKVYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +KV+ LP GS  ARGK  +N+L L +GERI T++   E                      
Sbjct: 602 KKVYELPQGSRVARGKPFVNLLPLEEGERINTVLSIRE---------------------- 639

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719
                                          ++  I + T  G   +  ++   R     
Sbjct: 640 -----------------------------FEKDKYIFMVTASGVVKKTSLADFSRPR--- 667

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S G+  + L +GDQ++   +         E + +       R           + +   
Sbjct: 668 -SSGIIALDLREGDQLVGADLTD----GVQEIMLFSSGGKVIRFSERDVRPVGRTARGVK 722

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +E          +      ILT +E G+GKRT+  ++R+  R G+GI +   +  N  G
Sbjct: 723 GMELPSEHRVIALIIAASGTILTATELGYGKRTAIAEYRLQGRGGRGIISIRTTPRN--G 780

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +V    V   D+++L+SD GTLIR PV+ I +  R T+GV + +  + ER+V +ERI E
Sbjct: 781 EVVGAVQVEKEDEVVLISDGGTLIRTPVDNISLMGRNTQGVKLINLQEGERLVGIERIVE 840

Query: 900 SEI 902
              
Sbjct: 841 DGE 843


>gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
 gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185]
          Length = 856

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 549/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++ C A IDNP+I ++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 PHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIYGVSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +KRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIEIGQT-HDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDLIKYFIEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KAR+RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    NN YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   +                                          
Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEI 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
 gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni]
 gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 866

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 537/905 (59%), Gaps = 85/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   +++   +  I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSV
Sbjct: 60  NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ A
Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R    IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +R
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R
Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I  E   L
Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIEAEYTDL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++  DIL+   R+  II QELL + ++    RRT +  G +   +++ ++ E+ V+
Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513

Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             ++H GY+KR+  S +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VY
Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + +P    QA+G  +IN+L L+ GER+  ++    D ++  + ++ F TK G V+R
Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +S+F  I +SG  A+ L   D ++SV     + +I++ +  G  V F  S +R   GR
Sbjct: 633 TAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L   D V+                                           
Sbjct: 692 TASGVRGMNLRDKDYVVGA----------------------------------------- 710

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L +    +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G
Sbjct: 711 ------------DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V+ ++ I++ +D G +IR    ++ I  RAT GV +    +  +V ++ ++ +
Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816

Query: 900 SEIVD 904
            E  +
Sbjct: 817 EEDEE 821


>gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 829

 Score =  863 bits (2229), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/900 (39%), Positives = 538/900 (59%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 2   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 409 -------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+      Y+ F T++G V+R   S F  I  
Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNIRT 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVNLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +                                                 
Sbjct: 692 EGDFVVGTSRID------------------------------------------------ 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 704 -----DNQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +      +E +S E
Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPE 816



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR   S +   R  G     + +RD D + ++   S    V+  + LG+  + K
Sbjct: 614 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 671

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +N+   +                  +N  V+  +++G  +R + 
Sbjct: 672 GAIVRDMGRAAAGVKGVNLREGD---------FVVGTSRIDDNQEVLVISENGLGKRTQA 722

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R   G   M +  R  ++  +     + D+++ T  G  +R  ++ I    GR
Sbjct: 723 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 781

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            + GV+ + L    Q+++ A+V     + +     +   +
Sbjct: 782 AAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPEVTDEA 821


>gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 848

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 552/900 (61%), Gaps = 85/900 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+  +  + K
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +LI+GQGNFGSVDGD PAA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK +  +L D+ KDTVD + N+D + +EP VL  R P +L+NG  GIAVGMATN+P H
Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDG  A IDN D+ +D LME ++ PDFPTG  I G  G++ A+ TGRG +V+R  
Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E+    RE I+VTEIPYQVNKA M++K A+++ +K+I  I+ +RDESDR G R+V  
Sbjct: 245 ATFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVYV 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +++LN+LY+YT+LQS FSVN +AL   +PE   L  ++  FV  R  VVVRRT
Sbjct: 304 IKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHVVVVRRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA  RAH+L GL IA  N+DEV+ IIR S N + AR+ L++R             
Sbjct: 364 EYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIER------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q +AI+E+RL +LTGL +D +R+E   +   I++  DIL+ 
Sbjct: 411 -------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAK 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + R + II++EL  +KD+    RR+ I     D+   D I  + +V+T+S+ GY+KR  L
Sbjct: 458 KERRMSIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y+ Q RGG G      R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS  +
Sbjct: 518 TEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS 577

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+A+ N++++ Q + +   +   +  DE   NN +++ ATK G V++  L  + +   +
Sbjct: 578 KGRAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATKKGQVKKTALEQYSRPRTN 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   DE+LSV+  T E+ ++L  K G+ +RF  S  R   GRN+ GVRGI+LA 
Sbjct: 638 GINAITIKDDDELLSVKLTTGESQVMLALKSGKAIRFEESKTRPM-GRNASGVRGITLAN 696

Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI M  V   +++                                           
Sbjct: 697 DQDEVIGMVSVNDVESN------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL VSEKG+GKR+S  D+RI+NR GKG++   V++  + G LVA+  V D 
Sbjct: 714 ---------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVAIKNVTDA 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V +++  +   + E  E
Sbjct: 763 DDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVKSDDEAIDEEDLE 822



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/419 (13%), Positives = 139/419 (33%), Gaps = 48/419 (11%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD--GTMYLSEVQTR 455
           +E+++ I    +    +   M  S    +++++ D   D   ++     G + ++++   
Sbjct: 442 EEIMKTIEDLKDILAKKERRM--SIIREELQEIKDKYGDERRSVIEYAGGDVSITDLIPD 499

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
             + + ++    + R  +          +        +   L  +               
Sbjct: 500 KKVVITISNAGYIKRTSLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQK 559

Query: 516 RRTRIVEGLLDM---------------EDEDCIVREDMVVT----------------VSH 544
            +   +                       E     +  V T                 + 
Sbjct: 560 GKCFWMRVFEIPEGSKTSKGRAIQNLINIEQDDEVKAFVCTGDLKDEEYINNHFIIMATK 619

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G VK+  L  Y   R  G   + + ++D+D +  + + +  + V+     G   +   +
Sbjct: 620 KGQVKKTALEQYSRPRTNG--INAITIKDDDELLSVKLTTGESQVMLALKSGKAIR---F 674

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                 P  R  + +  ++L   +     M    D  S     ++  ++ G  +R+ L D
Sbjct: 675 EESKTRPMGRNASGVRGITLANDQDEVIGMVSVNDVESN----ILVVSEKGYGKRSSLED 730

Query: 665 F--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +        G   + +  +  E+++++  T  +D+++  K G  +R  ++++RV  GR +
Sbjct: 731 YRITNRGGKGVKTISVTEKTGELVAIKNVTDADDLMIINKSGIAIRMEVASLRVM-GRAT 789

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            GVR I+L   D + ++A V   D   DE                  T +  +  N+  
Sbjct: 790 QGVRLINLKGNDSIAAVAKVKSDDEAIDEEDLEGVVGETTENPAGESTTQEQNTSNEEE 848


>gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
 gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC 11842]
          Length = 823

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D ++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDALLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++         ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+   D                                        
Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +      + 
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 906 AESTE 910
              TE
Sbjct: 818 EPETE 822


>gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
 gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A
 gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A
           [imported] - Buchnera sp. (strain APS)
 gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I 
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241

Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR      +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G 
Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+
Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I 
Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L                 Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  
Sbjct: 422 YLAKK-----------HEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYV
Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP 
Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L+  ERIT I+P  +     +NL +   T HG V+++ LS F + 
Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI 
Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + K D+V+S+ +  +  +                                          
Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V 
Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +  I 
Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826


>gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
 gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1]
          Length = 853

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/902 (41%), Positives = 539/902 (59%), Gaps = 87/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E      SV I DEM+ SYL YA++VI+GRA+PD RDGLKPVHRRILF M  +G  ++K
Sbjct: 2   DETLNSSVSVLIEDEMKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG++A+YDAL RMAQ WS+R +L++GQGNFGSVDGD PAA R
Sbjct: 62  PFKKSARVVGDVIGKYHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  LL D+ KDTVDF PNYD S +EP VL ARYPN+L+NG  GIAVGMATN
Sbjct: 122 YTEARMSRLAGELLADIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E ++  +A+++NP+ID D LM+I+ GPDFPTG  I GR+GI++A+ TGRGS+ 
Sbjct: 182 IPPHNLAETINATIALVNNPEIDDDELMQIMPGPDFPTGGFIYGRSGIRSAFMTGRGSVT 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  + +E      R+ +++TE+PYQVNKA ++E IA  VR+K++  I DLRDESDR G 
Sbjct: 242 MRARAIVEVNPRTHRQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ IELK+    +V+LN LY++T LQ  F  N++AL   +P+   +  +L  F+  R +V
Sbjct: 302 RIAIELKKNEIPEVVLNNLYKHTQLQCNFGCNLLALLDGQPKLCGVRELLLHFLDHRRQV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR  + L KA  RAH+L GL IA+  +DEV+++IR S     A+  LM+         
Sbjct: 362 VTRRCLFDLAKAEARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLME--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q +AIL++RL RLTGL RD I+ E   +   I    
Sbjct: 413 -----------------HFGLSDLQAQAILDMRLQRLTGLERDKIKAEYEEIQRLITHLK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+    L+ +I +E+ +V+D    PRR+ I++   ++  ED I  EDMVVT+S+ GY+
Sbjct: 456 AILADEKLLMNVIVEEMEAVRDRYADPRRSEIMDETAELSVEDLITEEDMVVTISNEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR   S+YRAQRRGG+G++ +  +DEDFV  L + STH  +LFFS  G V+++KV+ +P 
Sbjct: 516 KRNATSLYRAQRRGGQGKTAMTTKDEDFVAQLMVASTHDYLLFFSDQGRVFRKKVYEVPQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARGKAL+N+L + + ERI+  +   E +    N +++ ATK+G V++ +LS++  I
Sbjct: 576 AGSTARGKALVNLLPVEKDERISATLAIREFD---ENRFIIMATKNGVVKKTRLSEYQNI 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+KLD  D ++SV     + D++L T  G+ +RF  S +R   GR++ GV G+ 
Sbjct: 633 RANGIIAIKLDDDDGLISVLVSNGDEDVMLATSGGKAIRFAESDVRPM-GRSTRGVTGMR 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L     VISM +V                 +                             
Sbjct: 692 LPGDCNVISMTLVSDEATLLAVSENGFGKRT----------------------------- 722

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                        +VSE           + +  R G+G+        N  G +VA   V+
Sbjct: 723 -------------SVSE-----------YNVQKRGGQGVFTLKTGGRN--GDMVAALLVH 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D+DQ+++++D G L+R+ +N + +  R T+GV + +  + ERV+   R+ E    DE  +
Sbjct: 757 DDDQVMMMTDSGRLVRIRLNGVSVIGRNTQGVKLIACKEGERVIGAVRVAEQ-ADDELAT 815

Query: 909 TE 910
            E
Sbjct: 816 DE 817



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 98/258 (37%), Gaps = 16/258 (6%)

Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            E+  + + +  G VK+  LS Y+  R  G     + + D+D +  + + +    V+  +
Sbjct: 607 DENRFIIMATKNGVVKKTRLSEYQNIRANG--IIAIKLDDDDGLISVLVSNGDEDVMLAT 664

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G   +     +       RG   +         R+             +   ++  ++
Sbjct: 665 SGGKAIRFAESDVRPMGRSTRGVTGM---------RLPGDCNVISMTLVSDEATLLAVSE 715

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R  +S++    R G+    L +      +++      ++ +++ T  G+ VR  +
Sbjct: 716 NGFGKRTSVSEYNVQKRGGQGVFTLKTGGRNGDMVAALLVHDDDQVMMMTDSGRLVRIRL 775

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +    GRN+ GV+ I+  +G++VI    V     D       ++  + +         
Sbjct: 776 NGV-SVIGRNTQGVKLIACKEGERVIGAVRVAEQADDELATDELIEGTADEATANDAAAG 834

Query: 771 EITSLKNDSSVEGNISEE 788
           E      +S V  +  ++
Sbjct: 835 EQQEAAGESDVSNDEGDD 852


>gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363]
          Length = 836

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI 
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G R
Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV
Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M           
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548
           IL+   R+  II++EL  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+
Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P 
Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L L+ GE+I TI+    D+      Y+ F T++G V+R   S F  I
Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++
Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVN 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  + +                                               
Sbjct: 697 LREGDFVVGTSRID---------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN
Sbjct: 711 -------DNQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ +++++D G +IR  V  I    RA +GV +     + ++V+   +      +E +S
Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDS 821

Query: 909 TE 910
            E
Sbjct: 822 PE 823



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR   S +   R  G     + +RD D + ++   S    V+  + LG+  + K
Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +N+   +                  +N  V+  +++G  +R + 
Sbjct: 679 GAIVRDMGRAAAGVKGVNLREGD---------FVVGTSRIDDNQEVLVISENGLGKRTQA 729

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R   G   M +  R  ++  +     + D+++ T  G  +R  ++ I    GR
Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            + GV+ + L    Q+++ A+V     + +     +   +
Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPEVTDEA 828


>gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 556/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T++G V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRYGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705]
          Length = 870

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/890 (41%), Positives = 541/890 (60%), Gaps = 85/890 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D+ +E  IT+V++ + M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV   
Sbjct: 2   DDRQESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDT+DF+ NYDG+ +EPVVL AR+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +     ++D+PD     LM+ + GPDFPTG V++G++GI++AY TGRG+I
Sbjct: 182 NIPPHNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVMGKSGIRHAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+RG   ++     RE+IV+TEIPY VNKA M+E+IA+LV EK+I  I  LRDESDR G 
Sbjct: 242 VLRGKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+++R ASA VILN LY+ T LQ+ FS NMVA+    P+  +L  IL+ ++  +E V
Sbjct: 302 RIVIDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNGAPKVLSLKQILQYYLDHQENV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+ R H+L GL IA+ ++DE++ IIR S   + A+  LM +        
Sbjct: 362 IRRRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q++AIL++RL RLTGL RD + +E   +   I +  
Sbjct: 414 ------------------FNLSDKQSQAILDMRLVRLTGLERDKVESEYKDVEAAIADYT 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
           DIL+   R+  II  ELL ++ +    RRT ++   +L +EDED I +ED+V+T+SH GY
Sbjct: 456 DILAKPERVHQIIYDELLDIQKKFGDKRRTELLVGEVLSLEDEDLIEQEDVVITLSHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  S ++ Q RGG+G  G+ + D+DFV  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 VKRLATSEFKTQNRGGRGIQGMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  +IN+L +  GE+I T++   E     ++ Y+ F T++G V+R  + +F  
Sbjct: 576 EYSRTAKGIPIINLLGVGAGEKIQTVINVHE--GDNDDRYLFFVTQNGVVKRTPVKEFAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA+ L  +DE+ +V   + +++IL+ T LG  V F    +R   GR + GVRGI
Sbjct: 634 IRSNGLIALNLKDQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSM-GRTATGVRGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D V+   I+                                              
Sbjct: 693 RLRDHDYVVGSDILK--------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +  +SEKG+GKRT++ ++ I  R GKGI+  ++++ N  G L  V  V
Sbjct: 708 --------PDSEVFVISEKGYGKRTAAKEYPIKGRGGKGIKTANITEKN--GPLAGVTTV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  + I++++D G +IR  +  +    RAT GV +     D +V ++ ++
Sbjct: 758 DGTEDILVMTDSGVMIRFNIQNVSQTGRATLGVRLIRVDDDAKVATMAKV 807



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 94/275 (34%), Gaps = 17/275 (6%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    +  +  V+  G VKR P+  +   R  G     + ++D+D + ++ + S   
Sbjct: 603 NVHEGDNDDRYLFFVTQNGVVKRTPVKEFANIRSNG--LIALNLKDQDELNNVILTSGQD 660

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L  + LG+    K   +      A G   I         R+         +    +  
Sbjct: 661 NILIGTHLGYSVAFKEQDVRSMGRTATGVRGI---------RLRDHDYVVGSDILKPDSE 711

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLG 703
           V   ++ G  +R    ++  I   G   +K  +  E    +  V T     DIL+ T  G
Sbjct: 712 VFVISEKGYGKRTAAKEYP-IKGRGGKGIKTANITEKNGPLAGVTTVDGTEDILVMTDSG 770

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF I  +    GR ++GVR I +    +V +MA V     D D+     +    Q  
Sbjct: 771 VMIRFNIQNV-SQTGRATLGVRLIRVDDDAKVATMAKVEPESDDPDDSSKPDQPTDPQAG 829

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                 +        ++ E         E      
Sbjct: 830 PTDEHAQPADGQYAGNADEQVNKLLDRAETDKPAP 864


>gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
 gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403]
          Length = 829

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/900 (39%), Positives = 538/900 (59%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K +
Sbjct: 2   QDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G RVV
Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV R
Sbjct: 302 IEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVVER 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M             
Sbjct: 362 RTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I  E   L   I +  DIL
Sbjct: 409 -------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R+  II++EL  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P   
Sbjct: 516 LANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE+I TI+    D+      Y+ F T++G V+R   S F  I  
Sbjct: 576 RTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNIRT 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++L 
Sbjct: 633 NGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVNLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  + +                                                 
Sbjct: 692 EGDYVVGTSRID------------------------------------------------ 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN +
Sbjct: 704 -----DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVNGD 756

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    RA +GV +     + ++V+   +      +E ++ E
Sbjct: 757 EDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPE 816



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR   S +   R  G     + +RD D + ++   S    V+  + LG+  + K
Sbjct: 614 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 671

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +N+   +                  ++  V+  +++G  +R + 
Sbjct: 672 GAVVRDMGRAAAGVKGVNLREGDY---------VVGTSRIDDSQEVLVISENGLGKRTQA 722

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R   G   M +  R  ++  +     + D+++ T  G  +R  ++ I    GR
Sbjct: 723 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 781

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            + GV+ + L    Q+++ A+V     D +     +   +
Sbjct: 782 AAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPELTDET 821


>gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 858

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 545/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   +                                          
Sbjct: 695 DNDGQDEVIGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PAEE 825


>gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
 gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14]
          Length = 858

 Score =  862 bits (2228), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/904 (39%), Positives = 545/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   +                                          
Sbjct: 695 DNDGQDEVIGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++    + DE 
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 821

Query: 907 ESTE 910
            + E
Sbjct: 822 PTEE 825


>gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 839

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/895 (39%), Positives = 539/895 (60%), Gaps = 84/895 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++ ++     IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MAENDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGS+DGD P
Sbjct: 61  TPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ K+TVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIPTHNLGEV+     ++DNPD   + LM+++ GPDFPTG V++G++GI+ AY TGR
Sbjct: 181 MATNIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVMGKSGIRKAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R    IE+    R+QIVV EIPY VNKA ++E+IA+L R K I  I D+ DE+DR
Sbjct: 241 GTIVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +
Sbjct: 301 EGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKEILQYYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E VV RRT++ L KA +RAH++ GL IA+ ++DE++ IIR S   E A+ +LM+      
Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLME------ 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q +AIL++RL RLTGL R+ I  E   L   I 
Sbjct: 415 --------------------NYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+ + R+  II  ELL ++ +    RRT +    + ++EDED I  E ++VT++H
Sbjct: 455 DYKDILAHQERINQIIYDELLEIQKKFGDKRRTELQVGDITNIEDEDLIEEESIIVTLTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L    TH  +LFF++ G VY  K +
Sbjct: 515 NGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  +IN+L ++  E+I+ ++    +  + ++ ++ F TK G V+R  +++
Sbjct: 575 EIPEYGRSAQGIPIINLLGIDNKEKISAVINVSHET-NDDDKFLFFTTKQGTVKRTPVTE 633

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  +G  A+ L   DE++ V+    + ++++ T  G  + F  S +R   GR++ GV
Sbjct: 634 FKNIRSNGLKAINLHDNDELIHVDIVKDQQNMIIGTHHGYALSFNSSVVRSM-GRSAAGV 692

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L   D VI  A +                                           
Sbjct: 693 RGIRLRDDDYVIGTAPLDD----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SE G+GK+T + ++ I  R G G++  +V+K N  G LV +
Sbjct: 712 ------------DSNVLVISELGYGKQTPASEYPIKGRGGLGVKTVNVTKKN--GPLVGL 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V  ++ I+LV+D G +IR  V  +    R+  GV +        V ++ ++ +
Sbjct: 758 TTVKGDEDIMLVTDHGVIIRFGVETVSQTGRSALGVHLIKMDNGTHVATIAKVEK 812


>gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806]
          Length = 850

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/903 (39%), Positives = 536/903 (59%), Gaps = 64/903 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTE 124

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL   A + LL D+  +TVDF  N+DGS QEPVVL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++DG VA+I NPD+    L   I GPDFPTG  ILGR GI+ AY TGRGSI +R
Sbjct: 185 PHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        DR+ I++TE+PYQ NKAA++EKIA+LV +++I  I+D+RDESDR G
Sbjct: 245 GVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A   V+LN LY+ T LQS F  NM+AL   +P   TL   L+ F+ FR E
Sbjct: 305 IRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + +  +A+  L+Q        
Sbjct: 365 VITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQ-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L  + I+ E   L  +I + 
Sbjct: 417 ------------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ + R+  II++EL  +K    TPRR+ I +   ++ + D I  E  ++ V+  GY
Sbjct: 459 QDILAKKERIDSIIEEELQQIKTIHATPRRSHIEQREGEIAETDLIANEQALILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + +Q R  +G++G  M+++D +        H SVLFF+  G VY    + +P
Sbjct: 519 IKRMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ARG  ++ +L + +GE+IT+++   E      + Y++  T+ G +++  L+ F  
Sbjct: 579 TGSRTARGVPIVQLLEIPKGEKITSVVAVSEFS---EDNYLIMLTQKGFIKKTALAAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725
           I  +G IA+ L+  D++  V    +E+ +++ ++ G  + F      +R   GR + GV+
Sbjct: 636 IRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSL-GRATKGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L  GD++ISM I+                                  +++     + 
Sbjct: 695 SMKLRSGDELISMDILPSQIV-------------------------AQIAESNQEETEDE 729

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           SEE   E+     ++L ++  G GKR      R+ NR+G G+R     K N    L A+ 
Sbjct: 730 SEEINPEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKN--DKLAALH 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN N++ ++++++G +IR  V+ I   SR+  G+ +    +D+ + +V  +  S+  + 
Sbjct: 788 VVNPNEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAEES 847

Query: 906 AES 908
            +S
Sbjct: 848 EDS 850


>gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
 gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01]
          Length = 879

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/893 (44%), Positives = 545/893 (61%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPV----------------------------- 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                           DE       + E  I + T  G   + P++    FA   S G+ 
Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTPLNQ---FANVRSNGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I      D D  +        +           T+         + 
Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADE 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 154/429 (35%), Gaps = 29/429 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL++  +  H+L      +  + E +  +R                  A
Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDA-----RRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           +   D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 THDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDFIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   E E        D    E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL+ +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +   A     + +     
Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAEATEANAEGQAPEAPAAD 870

Query: 774 SLKNDSSVE 782
                S  E
Sbjct: 871 DAAEGSEEE 879


>gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
 gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11]
          Length = 836

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI 
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G R
Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV
Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M           
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLTD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548
           IL+   R+  II++EL  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+
Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P 
Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L L+ GE+I TI+    D+      Y+ F T++G V+R   S F  I
Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++
Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAIVRDM-GRAAAGVKGVN 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  + +                                               
Sbjct: 697 LREGDFVVGTSRID---------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN
Sbjct: 711 -------DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ +++++D G +IR  V  I    RA +GV +     + ++V+   +      +E +S
Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEEEETDS 821

Query: 909 TE 910
            E
Sbjct: 822 PE 823



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR   S +   R  G     + +RD D + ++   S    V+  + LG+  + K
Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +N+   +                  ++  V+  +++G  +R + 
Sbjct: 679 GAIVRDMGRAAAGVKGVNLREGD---------FVVGTSRIDDSQEVLVISENGLGKRTQA 729

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R   G   M +  R  ++  +     + D+++ T  G  +R  ++ I    GR
Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            + GV+ + L    Q+++ A+V     + +     +   +
Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEEEETDSPEVTDEA 828


>gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
 gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136]
          Length = 845

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/905 (40%), Positives = 550/905 (60%), Gaps = 86/905 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN DID+D LM  I+ PDFPTG  I G +G+++AY TGRG +V+
Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE      ++I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+
Sbjct: 242 RAKTEIESHPT-HDKIIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R EVV+
Sbjct: 301 VIDVKRDANASVVLNKLFKMTALQTSFGVNNIALVHGRPKLLNLKDLIRLFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ+RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FQLTEVQSRAIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++      +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LTNEELCKKVIKDELIEVKEKYGDQRRSEIVYASEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQHRGGVGSKGSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L+++  + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIDSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M  + +                                           
Sbjct: 694 LDEDGTDEVIGMICIKNP------------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +E+ I+ +SE G+GKR+   D+R +NR GKG++   +++  + G LVA+  
Sbjct: 712 ---------QEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITE--KTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V D + +++++  G  IR+ V  +RI  RAT+GV +    K ++++ SV ++      + 
Sbjct: 761 VTDENDLMIINKSGITIRLHVASVRIMGRATQGVRLIDLEKRNDQIGSVCKVTSESEEEN 820

Query: 906 AESTE 910
            ++ +
Sbjct: 821 VDNED 825



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 103/241 (42%), Gaps = 12/241 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + + +  ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGNNEIVIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      A G   I  L  +  + +  ++             ++  +++G  
Sbjct: 671 AIRFHESAVREMGRTATGVRGIT-LDEDGTDEVIGMICIKN----PQEETIMVISENGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L       +++++++ T END+++  K G  +R  ++++R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLSITEKTGKLVAIKSVTDENDLMIINKSGITIRLHVASVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I L K  DQ+ S+  V     + +        +        G  +E  
Sbjct: 786 IM-GRATQGVRLIDLEKRNDQIGSVCKVTSESEEENVDNEDSVSVDGIPFNEEGSADEKQ 844

Query: 774 S 774
            
Sbjct: 845 E 845


>gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801]
 gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802]
 gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801]
 gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802]
          Length = 857

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/887 (41%), Positives = 534/887 (60%), Gaps = 60/887 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM +SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   PQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  + + LL D+  +TVDF  N+DGS QEPVVL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP++    L ++I GPDFPTG  ILGR+GI++AY +GRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQILGRSGIRDAYTSGRGSITM 243

Query: 251 RGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DR+ I+VTE+PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR 
Sbjct: 244 RGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T +QS F  NM+AL   +P+  TL   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGEPQLLTLKQFLTVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA++R H+L GL IA+ NLD V+++IR + +  TAR  L+++      
Sbjct: 364 ETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L  +I +
Sbjct: 418 --------------------FGLSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II++EL  +K    TPRRT I+    ++ D D I  E  ++ ++  G
Sbjct: 458 LQDILARRERIEAIIEEELTQIKTIHATPRRTEIIHDEGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ R  +G++   ++++D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFGAQSRATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+I+   E      ++Y +  T+ G +++  LS F 
Sbjct: 578 PAASRTARGVPIVQMLPIPKDEKITSIVAVSEFR---EDVYFIMLTRKGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D++  V+   +E+ I++ T+LG  + F      IR   GR++ GV
Sbjct: 635 NIRTNGLIAIVLGEGDQLRWVKVAQEEDSIIIGTRLGMAIHFHADHQQIRPL-GRSTRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD++ISM I+          +   +            T E TS          
Sbjct: 694 KAMKLKKGDELISMDILSSQVIAGISTVHEGEEEEDLLENEEELTVEETSG--------- 744

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                         +ILT++  G+GKR     FR+ NR+G G+R       +    L ++
Sbjct: 745 ------------GPWILTITNGGYGKRVPVKQFRLQNRAGLGVRVIKF--KSPSDRLASL 790

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             VN+ D++++VS++G +IR  V+ I   SR   GV +    +D+ +
Sbjct: 791 LVVNEEDELMIVSNRGIIIRQAVDAISTQSRMATGVRVQRLDEDDAI 837


>gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 823

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/905 (39%), Positives = 536/905 (59%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++         ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+   D                                        
Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +      + 
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 906 AESTE 910
              TE
Sbjct: 818 EPETE 822


>gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147]
          Length = 836

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI 
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G R
Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV
Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M           
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLAD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548
           IL+   R+  II++EL  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+
Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P 
Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L L+ GE+I TI+    D+      Y+ F T++G V+R   S F  I
Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++
Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVN 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  + +                                               
Sbjct: 697 LREGDYVVGTSRID---------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN
Sbjct: 711 -------DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ +++++D G +IR  V  I    RA +GV +     + ++V+   +      +E ++
Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDA 821

Query: 909 TE 910
            E
Sbjct: 822 PE 823



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR   S +   R  G     + +RD D + ++   S    V+  + LG+  + K
Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +N+   +                  ++  V+  +++G  +R + 
Sbjct: 679 GAVVRDMGRAAAGVKGVNLREGDY---------VVGTSRIDDSQEVLVISENGLGKRTQA 729

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R   G   M +  R  ++  +     + D+++ T  G  +R  ++ I    GR
Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            + GV+ + L    Q+++ A+V     D +     +   +
Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPELTDET 828


>gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008]
 gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008]
          Length = 822

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/904 (42%), Positives = 541/904 (59%), Gaps = 84/904 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ S  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILGSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++   + E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF    +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLNAGDVVVGAGVLNTDE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  +EI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIE 818

Query: 904 DEAE 907
           +E E
Sbjct: 819 EEVE 822


>gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116]
          Length = 878

 Score =  862 bits (2227), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/893 (44%), Positives = 545/893 (61%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPV----------------------------- 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                           DE       + E  I + T  G   + P++    FA   S G+ 
Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTPLNQ---FANVRSNGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I      D D  +        +           T+         + 
Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADE 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL++  +  H+L      +  + E +  +R                  A
Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELEAVRDGYGDA-----RRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           +   D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 THDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDFIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   E E        D    E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL+ +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +   A     + +     
Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAEATEANAEGQAPEAPADD 870

Query: 774 SLKNDSSV 781
           + +     
Sbjct: 871 AAEGSEEE 878


>gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
 gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479]
          Length = 840

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/909 (40%), Positives = 549/909 (60%), Gaps = 92/909 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   EPNIFDKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+GK+TVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      + +++ ++EII+GPDFPTGA ILG+ GI+ AY T
Sbjct: 182 NIPPHNLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATILGKMGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +I+VTE+PY VNKA ++EK+AEL +EK+I  I DLRDES
Sbjct: 242 GRGKIRVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+VIEL+R  +A+VILNQL ++T LQ  F V M+AL   +P    L+ +LK ++ 
Sbjct: 302 DRSGMRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVNNEPRVLNLMQMLKLYLE 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ ELM+R   
Sbjct: 362 HQKEVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q +AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FGLSDAQAQAIVDMRLRALTGLEREKLENEFKELEAK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+   +LLG+I++E++ + D+    RRT I     DM  ED I  E+ +V ++
Sbjct: 456 IEELRAILADEKKLLGVIREEIMLISDKYGDDRRTSIGFDEFDMSMEDLIPDENTIVAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +++Q RGGKG  G+   D+D++ DL + + H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSVDNFKSQNRGGKGIKGMQTIDQDYIEDLIMTTNHHYIMFFTNTGRVYRLKT 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P GS  ARG A+IN+L L  GE IT I+P  E +   ++ ++  ATK+G V++  + 
Sbjct: 576 YAIPEGSRTARGTAIINLLQLLPGESITAIIPMKEYD---DDKFLFMATKNGMVKKTPMM 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L TK+GQC+RF  + +RV  GR S+G
Sbjct: 633 EYANVRKNGLQAIVLREDDELIEVKATDNSKDIFLITKMGQCIRFNETDVRV-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ L   D+V+ M                                             
Sbjct: 692 VIGMKLNDDDEVVGM--------------------------------------------- 706

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   ++  + + +L VSE G GKRT   +F    R GKG+    +++  + G +V 
Sbjct: 707 --------QMDTQGEKLLIVSENGMGKRTPIDEFTPQKRGGKGVLCYKITE--KTGKIVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESE 901
              V+D+  I++++++G +IR+ V +I +  R T GV + +     D RV S+ ++R+  
Sbjct: 757 AKLVHDDHDIMIITNEGIVIRISVEDISVIGRNTSGVKLMNIDQESDIRVASIAKVRDDG 816

Query: 902 IVDEAESTE 910
              E E  E
Sbjct: 817 SKSEGEGLE 825


>gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
 gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3]
          Length = 879

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/893 (44%), Positives = 545/893 (61%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGYGDVRRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPHATRTARGKPIVNILPLEEGERITAILPV----------------------------- 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                           DE       + E  I + T  G   + P++    FA   S G+ 
Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTPLNQ---FANVRSNGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I      D D  +        +           T+         + 
Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLADE 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRID 839



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 99/255 (38%), Gaps = 15/255 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    E  +   +  G VK+ PL+ +   R  G     V +RD+D +  + I +  + ++
Sbjct: 637 DEFSPEKFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIM 694

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G V +    ++      A   A +  + L   +++ +++         N   ++ 
Sbjct: 695 LFSKAGKVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILT 745

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
            T++G  +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR
Sbjct: 746 VTQNGYGKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVR 805

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GRN+ GV  I  A+ + V+ +  +   +          +         + 
Sbjct: 806 TRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAEATEENAEGQAP 864

Query: 768 DTEEITSLKNDSSVE 782
           +          S  E
Sbjct: 865 EAPAADDAAEGSEEE 879


>gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
 gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM
           16841]
          Length = 871

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/897 (41%), Positives = 540/897 (60%), Gaps = 90/897 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   DDKIFDQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDID-----LDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN  ++     ++ L+ I++GPDFPTGA+ILG TGI  AY T
Sbjct: 182 NIPPHNLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGTTGINEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R +++IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DLRDES
Sbjct: 242 GRGKIRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DRQG R+ IEL+R  + +V+LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 302 DRQGMRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLALVDNQPKVLNLQEMLGYYLD 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S N   A+  L++R   
Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ +AI+++RL  LTGL R+ I  E   L   
Sbjct: 419 -----------------------FSLTDVQAQAIVDMRLRALTGLEREKIEAEYAELMDR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LLG+I++E+L + ++    RRT I     D+  ED I   + V+ ++
Sbjct: 456 IAELKAILADEKKLLGVIREEILLIAEKYGDERRTSIGFDEYDISMEDLIPVTNTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ L  +RAQ RGGKG  G+   DED++ +L + ++H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSLDNFRAQNRGGKGIKGMETIDEDYIEELLMTTSHHYMMFFTNTGRVYRMKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L  GE+IT ++P  E        Y+  ATK+G V++  ++
Sbjct: 576 YEIPEAGRTARGTAIINLLQLQPGEKITAVIPIKEYT---EGHYLFMATKNGIVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    E DI L TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKKTDNEQDIFLVTKYGQCIRFNERDVRS-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G++L  GD+V+ M +    DA                                     
Sbjct: 692 VIGMNLTDGDKVVGMQMESQGDA------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++ VSEKG GK T + +F   NR GKG++   +++  + G +V 
Sbjct: 715 ----------------LMIVSEKGLGKCTLASEFTAQNRGGKGVKCYKITE--KTGNIVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V  VN +D+++L++ +G +IR+ V++  +  R T GV + + A D  V S+ ++RE 
Sbjct: 757 VKAVNQDDEMMLITTEGIIIRIKVSDTALLGRVTSGVKLMNLADDVTVASIAKVRED 813


>gi|207725376|ref|YP_002255772.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
 gi|206590612|emb|CAQ37574.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum MolK2]
          Length = 842

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/873 (41%), Positives = 531/873 (60%), Gaps = 65/873 (7%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD  AA RYTE RL K AH LL D+ K+TVDF PNYDGS  EP +L AR P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVDFEPNYDGSETEPSILPARIP 121

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+L+NG  GIAVGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I 
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY 181

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREK 291
           G +G++  Y TGRG +V+R  +H E     + + I+V E+PYQVNK  +LE+IAELV EK
Sbjct: 182 GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEK 241

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           R+  I+D+RDESD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P  
Sbjct: 242 RVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRL 301

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ F+  R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P 
Sbjct: 302 LNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPP 361

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRA 456
            A++ELM RSW++  ++D++   +  +               + +  DG   LS+ Q + 
Sbjct: 362 IAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQE 421

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    R
Sbjct: 422 ILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDER 481

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R++I     +++ ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D+
Sbjct: 482 RSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDW 541

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  LF+ +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P 
Sbjct: 542 IDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPV 601

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            + +      +V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D+
Sbjct: 602 KQFD---EQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDV 658

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  + +R   GR + GVRG++L +G QVI+M +     A   E+     
Sbjct: 659 MLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS 717

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LT +E G+GKRT   +
Sbjct: 718 -------------------------------------------VLTATENGYGKRTPISE 734

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  KG+ A   S+ N  G +VA   V   D+I+L++  G LIR  V+EIR   RA
Sbjct: 735 YTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRA 792

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           T+GV + +  +  ++  ++R+ ES+   E  + 
Sbjct: 793 TQGVTLIAVGEGNKLSGLQRVVESDAEGEDAAD 825



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 103/244 (42%), Gaps = 13/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 604 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 661

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
           S  G   +     +     QARG   +N   L +G+++  ++  P + +          V
Sbjct: 662 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 718

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 719 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 778

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++          +    
Sbjct: 779 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGATESDGEAPSA 837

Query: 766 SGDT 769
               
Sbjct: 838 DTTE 841


>gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
 gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1]
          Length = 866

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/905 (39%), Positives = 536/905 (59%), Gaps = 85/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   +++   +  I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSV
Sbjct: 60  NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ A
Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R    IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +R
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R
Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I  E   L
Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIETEYTDL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++  DIL+   R+  II QELL + ++    RRT +  G +   +++ ++ E+ V+
Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513

Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             ++H GY+KR+  S +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VY
Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + +P    QA+G  +IN+L L+ GER+  ++    D ++  + ++ F TK G V+R
Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKD-FLFFTTKLGTVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +S+F  I + G  A+ L   D ++SV     + +I++ +  G  V F  S +R   GR
Sbjct: 633 TAVSEFTNIRQLGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L   D V+                                           
Sbjct: 692 TASGVRGMNLRDKDYVVGA----------------------------------------- 710

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L +    +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G
Sbjct: 711 ------------DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V+ ++ I++ +D G +IR    ++ I  RAT GV +    +  +V ++ ++ +
Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816

Query: 900 SEIVD 904
            E  +
Sbjct: 817 EEDEE 821


>gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002]
 gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002]
          Length = 841

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/893 (41%), Positives = 531/893 (59%), Gaps = 65/893 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA-HFLL 143
           YHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DP AA RYTECRLQ  A + LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+  +TVDF  N+DGS QEPVVL +R P +LVNG  GIAVGMATNIP HNLGE++DG  
Sbjct: 121 RDIESETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVT 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD- 262
           A+I NP+I +  LM+ I  PDFPTGA ILGR+GIK+AY TGRGSI +RGV+ IE    + 
Sbjct: 181 ALIHNPEITIKELMQFIPAPDFPTGAQILGRSGIKDAYMTGRGSITMRGVAEIETLRQNG 240

Query: 263 --REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             +E I+VT++PYQ NKAA++E+IA++V +K+I  I+D+RDESDRQG R+VIELKR A  
Sbjct: 241 REKEAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELKRDAYP 300

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY++T LQ+ F  NM+AL   +P+   L   L+ F+ FR EV+ RRT+Y L KA
Sbjct: 301 RVVLNNLYKHTPLQANFGANMLALVNGEPQLLNLKQFLQVFLDFRVEVITRRTRYELRKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           ++R H+L GL IA+ NLD V+ +IR + +   AR+ LM                      
Sbjct: 361 QERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLM---------------------- 398

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+ Q  AIL+++L RLT L  D I  E   L ++I +  DIL+ R R+  I
Sbjct: 399 ----DGYNLSQAQADAILQMQLRRLTALEADKIEAEHQDLLLKITDLEDILARRERVYAI 454

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           I+ EL  +K    + RRT +V    D++D D I  E   + ++  GY+KR+P++ + AQ 
Sbjct: 455 IEAELTEIKTIHQSDRRTELVLDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQN 514

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           R  +G++   M+++D V        H  VLFF+  G VY    +++P  S  ARG   I 
Sbjct: 515 RATRGKAATKMKEDDGVDHFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGLPAIQ 574

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L + + E+IT ++   E      + Y+V  T++G +++  LS F +I  +G IA+ L+ 
Sbjct: 575 LLPIPKDEKITAMLAVSEFT---EDEYLVMLTQNGYIKKTALSAFAKIRSNGLIAISLED 631

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLA-KGDQVIS 737
            DE+  V    QE+ I++ +  G  + F    + +R   GR++ GVR + L    D+++S
Sbjct: 632 GDELRWVRLARQEDSIIVASSEGMAIHFQADHNQLRPL-GRSTRGVRAMKLKSDDDKLVS 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M IV                            +   ++    + E     E   E   + 
Sbjct: 691 MDIVSS--------------------------QITAAIAAADTAEDEDDNEEVTENVDQG 724

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            +++ V+ KGFGKR     FR+ NR+G G+RA      ++   L ++  VN  D+++LV+
Sbjct: 725 PWVIAVTTKGFGKRVPVGRFRLQNRAGVGLRAIKF--KSKADRLASLRIVNPEDELMLVT 782

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            +G +IR  V  I + SR+  GV +     D+ +V+V  +      D  E+ +
Sbjct: 783 GRGIMIRQAVESISLQSRSATGVRVQRLDGDDAIVAVALVPPPAEEDGLETVD 835


>gi|262197653|ref|YP_003268862.1| DNA gyrase subunit alpha [Haliangium ochraceum DSM 14365]
 gi|262081000|gb|ACY16969.1| DNA gyrase, A subunit [Haliangium ochraceum DSM 14365]
          Length = 891

 Score =  862 bits (2226), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 540/896 (60%), Gaps = 59/896 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T V+I  EM++S++ YA++VI+ RA+PD RDGLKPVHRRILF    +   WN+ Y+KC
Sbjct: 6   NVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNRPYLKC 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++GQGNFGS+DGDPPAA RYTECR
Sbjct: 66  ARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPPAAMRYTECR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL DL K+TVD++PNYD    EP VL  + PN+L+NG  GIAVGMATNIP HN
Sbjct: 126 MARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  +A++++PD+  + L EI+ GPDFPTG +I GR GI+ A+  GRG++VIRG +
Sbjct: 186 LGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGRGGIRAAHTLGRGAVVIRGRT 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E    +R+ IVVTE+P+ VNK+  +E  A LVR+KRI  I+D+RDESDR+G RVV EL
Sbjct: 246 QFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKGIRVVFEL 305

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+  V+LN L++ T+LQ+ F+VNM+A+   +P+  +L   L+ F+  R  VV RR  
Sbjct: 306 KRDANEQVVLNNLFKMTALQTSFNVNMLAIVDGRPQVLSLRSALQVFIEHRRTVVRRRCL 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDL 433
           + L +AR+R  ++ GL +AV  +D V+ IIR S + + A+  LM +R        +    
Sbjct: 366 FELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMGLDGFLERAGR 425

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
             D    + + G ++LS  Q +AIL++RL RLTGL R+ +  E   L         IL  
Sbjct: 426 PADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEITDYLEGILGD 485

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             +L G+I  EL  ++D+   PRRT IV+   ++ DE  I  EDMVVT +  GYVKR  L
Sbjct: 486 DVKLRGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTAL 545

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y AQ RGGKG  G    D+DFV D+F+ STH  +L F+++G VY++KV+ LP GS  +
Sbjct: 546 DEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRIS 605

Query: 614 RGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +G+  +N++  L   E +  ++P  E     ++L    AT+ G V++   + F +I  +G
Sbjct: 606 KGRPFVNVIEALQPDEYVVGMLPVKEFT---DDLSAFMATRMGTVKKTVAAAFSRIRVTG 662

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ +D  DE++ V     + D+LL TK GQ +RF    +R   GR + GVRGI LA G
Sbjct: 663 IKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQEDQVRPM-GREARGVRGIGLAGG 721

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M++                                                    
Sbjct: 722 DAVVGMSVFER------------------------------------------------- 732

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV E G+GKRT    +    R GKG+     ++ N  G +  V  V ++D 
Sbjct: 733 --DCEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERN--GPVSGVRLVGEDDH 788

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +I++S  G LIR+ V +I + SRAT+GV +      E+V S+ER+ E +   ++E+
Sbjct: 789 VIMISSTGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLERLAEPDDDADSEA 844



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 57/412 (13%), Positives = 122/412 (29%), Gaps = 42/412 (10%)

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R     +++++ D   D   T   D    + + Q   + ++ + R           +  S
Sbjct: 490 RGVIVDELREMRDQYADPRRTEIVDQEGEILDEQLIKVEDMVVTRTRRGYVKRTALDEYS 549

Query: 480 LGIEIKE--CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--------- 528
                 +            +  +                R    +               
Sbjct: 550 AQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQKKVYELPSGSRISKGRP 609

Query: 529 ----DEDCIVREDMVVTV--------------SHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
                E     E +V  +              + +G VK+   + +   R  G    G+ 
Sbjct: 610 FVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAAAFSRIRVTGIKAIGID 669

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
             DE     L        VL  +  G   + +  ++     +ARG   +  + L  G+ +
Sbjct: 670 DGDELVEVRL--TRPDMDVLLVTKRGQSIRFQEDQVRPMGREARG---VRGIGLAGGDAV 724

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--- 687
             +  F  D        ++   ++G  +R  LS +    R GK  + + + +    V   
Sbjct: 725 VGMSVFERDCEDA----ILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNGPVSGV 780

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               +++ +++ +  G+ +R  +  I     R + GVR + L  G+QV S+  +   D D
Sbjct: 781 RLVGEDDHVIMISSTGKLIRMRVRDI-PVQSRATQGVRLMRLDPGEQVASLERLAEPDDD 839

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            D      +           D         D + +     +     +  E  
Sbjct: 840 ADSEAVTPELGDDDEIGNEVDEAGEGDAGADDADDSAADADAGTSEEGTEDE 891


>gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
 gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon
           pisum)]
 gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I 
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241

Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR      +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G 
Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+
Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I 
Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L                 Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  
Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  ++  +IK ELLS+++     RRT+I E   ++  ED I +ED+VVT+SH GYV
Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSNINMEDLINQEDVVVTLSHSGYV 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP 
Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L+  ERIT I+P  +     +NL +   T HG V+++ LS F + 
Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI 
Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + K D+V+S+ +  +  +                                          
Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V 
Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +  I 
Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826


>gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334]
 gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/901 (40%), Positives = 559/901 (62%), Gaps = 87/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  S +R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMS-RGATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G+L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GSLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAES 908
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +   + E+  E E+
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVTAEKEEVGTENET 817

Query: 909 T 909
            
Sbjct: 818 E 818


>gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
 gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335]
          Length = 911

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/907 (39%), Positives = 534/907 (58%), Gaps = 67/907 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ 
Sbjct: 3   SPQERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RY
Sbjct: 63  FRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRY 122

Query: 131 TECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQ      LL D+  +TVDF  N+DGS QEPVVL AR P +L+NG  GIAVGMATN
Sbjct: 123 TESRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG VA+IDNP +    LME I GPDFPTGA I+G  GI+ AYATGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSRGIREAYATGRGSVT 242

Query: 250 IRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +RGV+ IE        DRE I++TE+PYQ NKAA++EKIA++V E R+  I+DLRDESDR
Sbjct: 243 MRGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDR 302

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A   V+LN LY+ T LQ+ F VNM+ L   +P+  +L+  L+ F+ FR
Sbjct: 303 DGMRIVIELKRDAYPKVVLNNLYKQTPLQNNFGVNMLGLVNSEPQLLSLLDFLQVFLDFR 362

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E + RRT+Y L KA++R H+L G  IA+ NLD V+ +IR S +  +A+ EL++      
Sbjct: 363 IETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIE------ 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               +   S  Q  AIL+++L RLT L  + I+ E  +L  +I 
Sbjct: 417 --------------------SYGFSATQADAILQMQLRRLTALEAEKIQQEHEALTEKIA 456

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL++R R+L IIK+E++ +++     RRT I     D+ D   I  E + + V+  
Sbjct: 457 DLEDILANRDRILAIIKEEVIQIRNAYANERRTLIKADENDLSDISLIANEQVAILVTEQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+ +  + AQ R  +G+SG  M+D+D +       +H  VLFFS  G  Y  + ++
Sbjct: 517 GYIKRMLVDTFEAQNRATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQ 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G  L+ +L + + E++T+++   E      + Y+V  T+ G +++  LS F
Sbjct: 577 IPESSRTAKGYPLVQMLPIPKEEKVTSVIGVSEFS---EDDYLVMLTQGGFIKKTALSAF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVG 723
            +I  +G IA+ L+  DE+  V   T ++ +L+ ++ G  + F      +R   GR + G
Sbjct: 634 NRIRTNGLIAISLEDGDELRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPL-GRPTKG 692

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ +SL +GDQ+ISM I+                                  + + +++ 
Sbjct: 693 VKSMSLREGDQLISMDILPSQ----------------------------VVEEVEGAIDD 724

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +  +        +  ++L VS  G GKR    +FR+ NR+G G+ A       +   LVA
Sbjct: 725 SDEDADELANADQGPWVLVVSSGGLGKRVPVSNFRLQNRAGMGLVAMKF--RKDGDELVA 782

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +     +D++++VS +G ++R  V+ I + SR   GV +     D+ + +V  +   +  
Sbjct: 783 LRIAGPDDELMIVSQRGIIMRQSVDAISVQSRMATGVQLQRLDSDDAIAAVALVPHLDES 842

Query: 904 DEAESTE 910
           D    +E
Sbjct: 843 DNEMPSE 849


>gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
 gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           italicus DSM 15952]
          Length = 823

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/889 (41%), Positives = 541/889 (60%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I SV++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEAKQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     ++DNPD+    LME++ GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   I++ S  +E+I++TE+PY VNKA ++E+I+EL R+KRI  I  LRDES R+G R
Sbjct: 243 VRGRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VILN +Y+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EV+
Sbjct: 303 IVIEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   KA  RAH+L GL IA+ ++DE++ IIR S + + A+  L++R         
Sbjct: 363 TRRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S+ Q +AIL++RL RLTGL R+ I NE   L   I +  D
Sbjct: 414 -----------------FDFSDRQAQAILDMRLRRLTGLEREKIENEYQELLAFIADLTD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ IIK+ELL +       RRT ++   +L +EDED I  E++V+T+++ GY+
Sbjct: 457 ILARPERVVQIIKEELLDLGKRFGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV  + +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P 
Sbjct: 517 KRVANTEFRAQRRGGRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++  ERI  I+            Y+ F TK G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSSERIQAIIAVKN--HEAAEQYLFFTTKLGVVKRTDVQAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L  +DE+++V      + I++ T  G  V F  S +R   GR + GVRGI 
Sbjct: 635 RSNGLIAIGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDM-GRAAAGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  AI+                                               
Sbjct: 694 LREGDYVVGTAILTP--------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   E  +L ++E G+GKRT+S ++ +  R GKGI+  +++  N  G L  +  V+
Sbjct: 709 --------ESEVLVITENGYGKRTASSEYPVKGRGGKGIKTANITPKN--GPLAGLTTVS 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             + I++++DKG +IR  V  +    RAT GV +     + +VV++  +
Sbjct: 759 GEEDILVITDKGVIIRFNVATVSQTGRATLGVRLMKMENEAKVVTMATV 807


>gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
 gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I 
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241

Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR      +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G 
Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+
Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I 
Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L                 Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  
Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYV
Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP 
Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L+  ERIT I+P  +     +NL +   T HG V+++ LS F + 
Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI 
Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + K D+V+S+ +  +  +                                          
Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V 
Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +  I 
Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826


>gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 823

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++         ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+   D                                        
Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +      + 
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 906 AESTE 910
              TE
Sbjct: 818 EPETE 822


>gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
 gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC
           43184]
          Length = 869

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/904 (40%), Positives = 558/904 (61%), Gaps = 88/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y
Sbjct: 3   DQDRIIKINIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTVDF+ N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLSKLAEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           THNL EV+DGC+A ID   ++++  LM+ I+ PDFPTGA I G  G+K+A+ TG+G IV+
Sbjct: 183 THNLSEVLDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIYGYAGVKDAFETGKGRIVL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE    + E+I+++EIPY VNKA +++ IA+LV EKRI  I+++ DESDRQG R+
Sbjct: 243 RGKAEIET-ENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++KR A++ V+LN+LY+ T+LQS FSVN +AL   +P+   L  ++KAFV  R EVV+
Sbjct: 302 VVDVKRDANSSVVLNKLYKMTALQSSFSVNNIALVNGRPKLLNLKDLIKAFVDHRHEVVI 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA +RAH+L GL IA  N+DEV+ II+ S +P  A   LM+R          
Sbjct: 362 RRTKYDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q+RAI+E+RL +LTGL +D +R E   +   I    +I
Sbjct: 412 ----------------FSLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEEIEKLIAYLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +    + +IK EL  +KD+    R+T IV    ++  ED    ++M++T+SH+GY+KR
Sbjct: 456 LENDDLCMKVIKDELQEIKDKYGDERKTDIVYASEELNPEDFYADDEMIITISHMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   RDEDFV  ++  S H ++L F++ G  Y  KV+ +P G+
Sbjct: 516 TPLSEFRAQGRGGVGAKGSETRDEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGA 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             ++G+A+ N+L++   +++   +   +   D    N+ Y++F TK G +++  L  + +
Sbjct: 576 KNSKGRAIQNLLNIEPDDKVNAFIRVKKLTTDTEFINSHYLLFCTKKGVIKKTLLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ L   D ++ V      N++L+  + G+ +RF  +A+RV  GR + GVRG+
Sbjct: 636 PRQNGVNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRFHENAVRVM-GRTASGVRGM 694

Query: 728 SLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +L     D+V+ M  +   +                                        
Sbjct: 695 TLDDDSNDEVVGMVCIKDKEK--------------------------------------- 715

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + +L VSE+G+GKR++  D+RI+NR GKG++  ++++  + G LVA+ 
Sbjct: 716 ------------ETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITE--KTGKLVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V + + I++++  G  IR+ V+++ +  RAT+GV + +  K ++ + SV ++      +
Sbjct: 762 NVTEENDIMIINKSGITIRMKVSDLNVIGRATQGVRLINLGKRNDEIASVCKVLSQTEEE 821

Query: 905 EAES 908
            AE 
Sbjct: 822 IAEE 825



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 105/259 (40%), Gaps = 12/259 (4%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +K+  L  Y   R+ G   + + +R++D + ++ + + +  VL  +  G   + 
Sbjct: 619 CTKKGVIKKTLLEAYSRPRQNG--VNAITLREDDGLIEVCMTNGNNEVLIANRNGRAIRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               + +    A G   +  L  +  + +  ++   +         V+  ++ G  +R+ 
Sbjct: 677 HENAVRVMGRTASGVRGMT-LDDDSNDEVVGMVCIKD----KEKETVLVVSEQGYGKRSN 731

Query: 662 LSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + D+        G   + +  +  ++++++  T+ENDI++  K G  +R  +S + V  G
Sbjct: 732 IEDYRITNRGGKGVKTINITEKTGKLVAIKNVTEENDIMIINKSGITIRMKVSDLNVI-G 790

Query: 719 RNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVR I+L K  D++ S+  VL    +        +       +     E       
Sbjct: 791 RATQGVRLINLGKRNDEIASVCKVLSQTEEEIAEEKAQREALEDAAIHEHPIENTDFEDV 850

Query: 778 DSSVEGNISEERCQELKLK 796
              VE N + +  +    +
Sbjct: 851 SDDVESNENADDTEGTTEE 869


>gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon
           pisum)]
 gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  861 bits (2225), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I 
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241

Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR      +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G 
Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+
Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I 
Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L                 Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  
Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYV
Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP 
Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L+  ERIT I+P  +     +NL +   T HG V+++ LS F + 
Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI 
Sbjct: 648 RFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + K D+V+S+ +  +  +                                          
Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V 
Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +  I 
Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826


>gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
 gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429]
          Length = 866

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/905 (39%), Positives = 536/905 (59%), Gaps = 85/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   +++   +  I    +   M+ S+L+YA++VI+ RA+PD+RDGLKPVHRRILFGM
Sbjct: 1   MADE-ENNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGK+HPHG++AIY++L RMAQ +S R  L++G GNFGSV
Sbjct: 60  NELGVTPDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE RL K A  +L D+ K TVDF+P+YDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV+     ++ NPD  +  LME + GPDFPTGA+++G++GI+ A
Sbjct: 180 GIAVGMATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVMGKSGIRRA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS+ +R    IE +S   E+I V+E+PY VNKA ++E+I ELV EK++  I  +R
Sbjct: 240 YETGRGSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G R+ I++ R A+A+V+LN LY+ T LQ+ FS NM+A+N  KPE  +L  IL A
Sbjct: 300 DESDQNGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGKPETMSLKQILVA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  + E++ RRT++ L KA+DRAH+L GL IA+ ++D ++ +IR S   E A+ EL+ R
Sbjct: 360 YLEHQREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINR 419

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R  I  E   L
Sbjct: 420 --------------------------YQLSDKQAQAILDMRLVRLTGLERGKIETEYTDL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++  DIL+   R+  II QELL + ++    RRT +  G +   +++ ++ E+ V+
Sbjct: 454 LKSIEDFKDILAKPERIDQIIYQELLDIANKFGDERRTELQVGDVSSIEDEDLIDEEEVL 513

Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             ++H GY+KR+  S +  Q RGG+G  G+   D+DFV  L   STH ++LFFS  G VY
Sbjct: 514 ISLTHKGYIKRLSTSEFHTQNRGGRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + +P    QA+G  +IN+L L+ GER+  ++    D ++  +  + F TK G V+R
Sbjct: 574 KMKGYEVPEYGRQAKGIPVINLLGLDAGERVQAVINVRGDAATSKDS-LFFTTKLGTVKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +S+F  I +SG  A+ L   D ++SV     + +I++ +  G  V F  S +R   GR
Sbjct: 633 TAVSEFTNIRQSGLRAINLRDDDSLISVLLTNGKQNIVIASHSGYAVSFAESDVRAM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG++L   D V+                                           
Sbjct: 692 TASGVRGMNLRDKDYVVGA----------------------------------------- 710

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                       +L +    +L ++EKG+GK+T+  ++ I  R GKG + +++S  N  G
Sbjct: 711 ------------DLLIPGDNVLIITEKGYGKQTAVEEYPIRGRGGKGYKTSNISSKN--G 756

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V+ ++ I++ +D G +IR    ++ I  RAT GV +    +  +V ++ ++ +
Sbjct: 757 PLAGLAVVSGDEDIMITTDSGVMIRFAAADVSITGRATLGVHVIKIEEGSKVATLAKVEK 816

Query: 900 SEIVD 904
            E  +
Sbjct: 817 EEDEE 821


>gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon
           pisum)]
          Length = 830

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 391/895 (43%), Positives = 573/895 (64%), Gaps = 71/895 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  + I  V+I +E+++SYL Y+++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YDA+ RMAQ +SLR +LI+GQGNFGSVDGD  AA R
Sbjct: 62  AYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH LL+DL K+TV+F PNYDG+   P +L A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI L+ L++ I GPDFPT A+I G++GI+ AY TG+G I 
Sbjct: 182 IPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKIY 241

Query: 250 IRGV-SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR      +     +E IV  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G 
Sbjct: 242 IRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR A A+VILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ R+E+
Sbjct: 302 RIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQEI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R+R H+L GL +A+ N++ ++ II+ S N   A++ ++Q++W +  I 
Sbjct: 362 IIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKIN 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L                 Y SE Q +AIL+LRL ++T L ++ I  E N L  + KE  
Sbjct: 422 YLAKK-----------HEYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  ++  +IK ELLS+++     RRT+I E   D+  ED I +ED+VVT+SH GYV
Sbjct: 471 EILENPKKMFEVIKSELLSIQNNFSDKRRTKITENHSDINMEDLINQEDVVVTLSHSGYV 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  PLS Y AQRRGGKG+S   +++EDF+  L I +TH ++L FSS G +Y  KV++LP 
Sbjct: 531 KYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARG+ ++N+L L+  ERIT I+P  +     +NL +   T HG V+++ LS F + 
Sbjct: 591 SSRHARGRPIVNLLPLSPKERITAILPVHKY---QDNLNIFMTTAHGIVKKSSLSQFKKP 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L + DE++ V      N+I+L T+ G+ V+F  +++R   GR + GV+GI 
Sbjct: 648 RFAGIIAINLHTNDELIGVALTDGNNNIMLFTQNGKVVQFLENSVRTM-GRTASGVKGIK 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + K D+V+S+ +  +  +                                          
Sbjct: 707 IKKNDKVVSLIVPKNKGS------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL  ++ G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V 
Sbjct: 725 -----------ILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN--GKIIGAIQVI 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + DQI++++D GTL+R+ V+E+ +  R T+GV++  T+K+E+VV++++I +  I 
Sbjct: 772 EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIE 826


>gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 848

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/897 (39%), Positives = 538/897 (59%), Gaps = 84/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +EQIVVTE+PY VNKA ++E+I+EL R+K+I  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A++   P+  +L  IL A++A + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 412 ---------------NGYALSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T+++ GY+
Sbjct: 457 ILAHEERVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV    ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVATGEFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I T++    +    N+ Y+ F T+ G V+R  + +F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEGNEKIQTVINVRGEAGESND-YLFFVTRLGVVKRTAVKEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+      +I++ T  G  V F  + +RV  GR++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+   ++                                               
Sbjct: 695 LREGDLVVGSDVL----------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+  +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+
Sbjct: 708 ------EKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVS 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             + I++ + +G +IR  V+ +    RAT GV +     + +V ++ ++   E++++
Sbjct: 760 GQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816


>gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
 gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412]
          Length = 824

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/906 (41%), Positives = 542/906 (59%), Gaps = 84/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I +E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   ILSS +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILSSEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++   + E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERVQEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV       DILL TKLG  +RF  + +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDHLISVNVTNGSQDILLGTKLGIAIRFSENDVRLMK-RAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   +                                       
Sbjct: 691 RGIKLNAGDVVVGAGVLNADE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +V+V
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVSV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGSEIE 818

Query: 904 DEAEST 909
           ++A   
Sbjct: 819 EDATEE 824


>gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
 gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Pedobacter sp. BAL39]
          Length = 869

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 557/900 (61%), Gaps = 88/900 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +   + +E   I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM
Sbjct: 1   MAEDL---ENQENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+  NK Y K ARI GEV+GKYHPHG+A++Y+ + RMAQ+WSLR L++EGQGNFGS+
Sbjct: 58  LDLGLANNKPYKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R QK A  +L D+ KDTVDF+ N+D S QEP VL ++ PN+L+NG  
Sbjct: 118 DGDFPAAMRYTEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HN+ E ++  VA ID+ DI++  LM+ ++ PDFPTGA+I G TG++ A
Sbjct: 178 GIAVGMATNMPPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIYGYTGVQEA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRG IV+R  + IE     RE I+VTEIPYQVNKA M+E+ AEL+ EK+I  I++++
Sbjct: 238 FETGRGRIVMRAKAEIETNKE-RETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIK 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES++ G R+V E+KR A+A ++LN L++ T+LQ+ FSVN +AL   +P+   L  +++ 
Sbjct: 297 DESNKDGIRIVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGRPQLLNLKDLIRH 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R +VVVRRTK+ L +A+ RAH+L GL IA+ +LDEV+++IR S  PE AR  LM++
Sbjct: 357 FVDHRHDVVVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQ 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q RAIL++ L RLTGL RD I++E N L
Sbjct: 417 --------------------------FGLSDIQARAILDMTLRRLTGLERDKIKDEYNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL S+   + IIK EL  +K++    RRT IV    DM  ED I  ED+V+
Sbjct: 451 MKTIEYLQSILDSKELRMQIIKDELNEMKEKYGDERRTTIVHSAEDMSMEDFIEDEDVVI 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY+KR P + YR Q RGGKG  G   R+EDF+  L + S H  +LFF+  G  + 
Sbjct: 511 TISHEGYIKRTPATEYRTQGRGGKGSKGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFW 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVR 658
            +V+ +P GS  ++G+A+ NI+++ + E+I   +      D+    N Y++  TK G ++
Sbjct: 571 LRVYEIPEGSRLSKGRAIQNIINIPKEEKIKAYIKVKNLKDQEYLENNYIIMCTKKGTIK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L  + +   +G  A+ ++  D++L     T  ++I++  + G+ +RF    +R   G
Sbjct: 631 KTSLEAYSRPRVNGINAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPM-G 689

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++LA   D+V+ M  V   +                                
Sbjct: 690 RTATGVRGVTLAHDQDEVVGMIAVDDPNVT------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L VSEKG+GKRT   D+R++NR GKG++   V++  +
Sbjct: 720 ----------------------VLVVSEKGYGKRTDIEDYRVTNRGGKGVKTISVTE--K 755

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            GALVA+  V D D +++++  G +IR+ V+E+R+  RAT+GV + +   ++ + SV +I
Sbjct: 756 TGALVAIKNVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDAIASVAKI 815


>gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
 gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1]
          Length = 852

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/889 (41%), Positives = 539/889 (60%), Gaps = 85/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E + I  ++I +EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRILFGM ++GV  NK
Sbjct: 3   EGENENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR  L++GQGNFGS+DGD PAA R
Sbjct: 63  PHKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  +L D+ KDTVD++ N+D S +EPVVL A+ P +L+NG  GIAVGMATN
Sbjct: 123 YTEARLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEV+ G +A I+N +I +  LME +  PDFPTG +I G  G+K A+ TGRG IV
Sbjct: 183 MAPHNLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIYGYNGVKAAFETGRGRIV 242

Query: 250 IRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +RG ++IE   G   E IV+TEIPY VNKA+M+EK A+L+ EK+I  I+ +RDESDR G 
Sbjct: 243 MRGKANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V ELKR A   VILN LY++T LQ+ FSVN VAL   +P    L  ++  +V  R EV
Sbjct: 303 RIVYELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGRPYTLNLKDLIVHYVDHRHEV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RRT+Y L +A  RAH+L G  IA+ +LDEV+ +IR S +PETAR  L++R        
Sbjct: 363 VIRRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAIL++RL RLTG+ R+ I  E   +   I+E  
Sbjct: 415 ------------------FDLSEIQARAILDMRLQRLTGMEREKIIQEYKEIMALIEELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL +  + + IIK EL  +KD     RRT I     D   ED I  E++++TVSH GYV
Sbjct: 457 EILENEDKRMEIIKTELTEMKDRYADDRRTEIEHNAEDFSYEDMIPNEEVIITVSHQGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L+ YR Q RGG G  GV  +++DF   LF  STH  +L F+  G ++  K + +P 
Sbjct: 517 KRTALTEYRTQGRGGVGSRGVSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G+  ++G+ + N++++   +RI +I+   +  D    NN ++V  TK G +++  L  + 
Sbjct: 577 GNKTSKGRPIQNLINIQSDDRIRSIIQVNDLNDADYINNHFLVMVTKKGVIKKTTLEQYS 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ +   D++++V+    +  I++  K G+ + FP +A+R   GR + GV+ 
Sbjct: 637 RPRTNGIIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPM-GRTATGVKA 695

Query: 727 ISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I+L  + D VI M       A                                       
Sbjct: 696 ITLTGQDDFVIGMVCASEDTAT-------------------------------------- 717

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE G+GKR+   ++RI+NR GKG++A +V+  ++ GALVA+ 
Sbjct: 718 --------------LLVVSENGYGKRSYLNEYRITNRGGKGVKAMNVT--DKTGALVAIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            V D D +++++  G +IR+ ++ +RI  RAT+GV +      +++ SV
Sbjct: 762 EVTDADDLMIINKSGIIIRISMDTLRIMGRATQGVRLIKVGDSDQISSV 810



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 100/244 (40%), Gaps = 13/244 (5%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V V+  G +K+  L  Y   R  G     + +R++D + ++ + +    ++  +  G   
Sbjct: 619 VMVTKKGVIKKTTLEQYSRPRTNG--IIALNIREDDQLVNVKMTNGDQHIVIAAKSGRAI 676

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 +      A G   +  ++L   +            +S +   ++  +++G  +R
Sbjct: 677 HFPETAVRPMGRTATG---VKAITLTGQDDFV----IGMVCASEDTATLLVVSENGYGKR 729

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + L+++   NR GK    ++  D+    ++++  T  +D+++  K G  +R  +  +R+ 
Sbjct: 730 SYLNEYRITNRGGKGVKAMNVTDKTGALVAIKEVTDADDLMIINKSGIIIRISMDTLRIM 789

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GVR I +   DQ+ S+  +   + +  E I   +   +     + +    T   
Sbjct: 790 -GRATQGVRLIKVGDSDQISSVEKITIEEVEEIEDIESSEASDSPDASDTANEAPETPGD 848

Query: 777 NDSS 780
             + 
Sbjct: 849 EPND 852


>gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
 gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           ruminis ATCC 25644]
          Length = 835

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/888 (39%), Positives = 534/888 (60%), Gaps = 84/888 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++  M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K Y K ARI G+
Sbjct: 1   MSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIY+++ RMAQD+S R LL++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 61  VMGKYHPHGDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIAL 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDTVDF+PNYD + +EPVVL +R+PN+LVNG  GIAVGM TNIP HNL EV+ 
Sbjct: 121 EMLRDINKDTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVIS 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G   +++NPD     LME I GPDFPTGA+++G++GI+ AY TG G++ +R    IE+ S
Sbjct: 181 GLHLLMENPDATTAELMEAIPGPDFPTGAIVMGKSGIRKAYETGHGTVTLRAKVDIEEQS 240

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + +I+V EIPY VNKA ++ +IA+L REK+I  I D+ DESDR+G R+ I+++R  S 
Sbjct: 241 NGKSRIIVHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSP 300

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY+ T +QS F+ NM+A+    P+   L  IL+ ++  +E+V+ RRT + L KA
Sbjct: 301 SVVLNNLYKLTLMQSSFTFNMLAIVDGTPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKA 360

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + RAH+L GL IA+ ++D ++ IIR S + E A+  LM                      
Sbjct: 361 QARAHILEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNE-------------------- 400

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LS+ Q +AIL++RL RLTGL R+ +  E       I +  DIL+   R+  I
Sbjct: 401 ------YELSDKQAQAILDMRLVRLTGLEREKVDAEYKKTLEAIADFKDILAHEERVNSI 454

Query: 501 IKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I QELL ++++    RRT ++   +L +EDED I  E++V+ ++H GY+KR+P S ++ Q
Sbjct: 455 IYQELLEIQEKFGDDRRTELMVGEVLSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG+G  G+ + D+DF+  L   STH  VLFF+++G VY+ K + +P     A+G  +I
Sbjct: 515 RRGGRGVQGMGVHDDDFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVI 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L++GE+I T++   + E   ++ ++ F T  G V+R  +++F  I ++G  A+ L 
Sbjct: 575 NLLDLSEGEKIQTVINV-DPEKRNDSHFLFFTTVQGVVKRTSVTEFGNIRKNGLKAITLR 633

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+L+V       +I++ T  G  V F  +A+R   GR + GVRGI L   D  +   
Sbjct: 634 EGDELLNVSITDGNQNIIIGTHGGYAVSFSENAVRQM-GRTASGVRGIRLRDDDYAVGSD 692

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++                                                       +  
Sbjct: 693 VLK-----------------------------------------------------PDSN 699

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +  +SEKG+GK+T + D+ I  R GKGI+ +++++ N  G+L  +  V+  + I++++DK
Sbjct: 700 VFVISEKGYGKQTPASDYPIKGRGGKGIKTSNITEKN--GSLAGLTIVDGTEDIMVITDK 757

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           G +IR  V  +    R+T GV + +   D +V ++ ++   +   + E
Sbjct: 758 GVMIRFNVKSVSTTGRSTMGVHLINLDDDAKVSTIAKVEPEQPEADDE 805


>gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
 gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261]
          Length = 822

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/900 (40%), Positives = 555/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL I++ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFGDQRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RIAKGLPIVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  +RF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+  +++                                                 
Sbjct: 693 DGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G+L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GSLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
 gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170]
          Length = 843

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/902 (40%), Positives = 550/902 (60%), Gaps = 87/902 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGS+DGD PAA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN DID D LM+ I+ PDFPTG  I G +G++ AY TGRG IV+
Sbjct: 182 PTHNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIYGVSGVREAYETGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE      ++I+V EIPY VNK  ++EKIA LV EK++  I+ + DE+DR+G R+
Sbjct: 242 RAKTEIESHPT-HDKIIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+L++ T LQS F+VN +AL   +P   +L  +++ FV  R EVV+
Sbjct: 301 VIDVKRDANASVVLNKLFKMTELQSSFNVNNIALVHGRPRLLSLKDLIRLFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ RAI+E+RL +LTGL ++ +  E   L  +I    +I
Sbjct: 411 ----------------FQLTEVQARAIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS+      +IK ELL VK++    RR+ IV    +   ED    ++MV+T+SHLGY+KR
Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFNPEDFYADDEMVITISHLGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +R Q RGG G  G   RDEDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L++   +++T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 RTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V     +NDI++  + G+ +RF  +A+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+V+ M  +                                             
Sbjct: 694 LDEDGQDEVVGMICIKDP------------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +++ I+ +SE G+GKR+   D+R +NR GKG++  ++++  + G LVA+  
Sbjct: 712 ---------QKETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITE--KTGKLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K ++ + SV ++  S+  ++
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLGKRNDSIGSVCKVN-SDTEEQ 819

Query: 906 AE 907
            E
Sbjct: 820 ME 821



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/481 (13%), Positives = 163/481 (33%), Gaps = 27/481 (5%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R  I      ++D I   +    + ++        ++ ++        I++  +     +
Sbjct: 373 RAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDRFQLTEVQARAIVEMRLRQLTGL 432

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +  +      +   +      +        +V++        +   +   +  +++ +  
Sbjct: 433 LQEQLHAEYEELMKQIAYYEEILSNEELCKKVIKDELLEVKEKYGDKRRSEIVYSSEEFN 492

Query: 429 DLIDLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                 DD      S         LS+ +T+    +          D I +   +     
Sbjct: 493 PEDFYADDEMVITISHLGYIKRTPLSDFRTQHRGGVGAKGSETRDEDFIEHIYPATMHNT 552

Query: 485 K---------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
                       L +            + + ++ +     + T  +      + E     
Sbjct: 553 LLFFTQKGKCYWLKVYEIPEGNRTSKGRAIQNLLNIEADDKVTAYLRVKNLNDTEFVNSH 612

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ +      ++  +  
Sbjct: 613 --YVLFCTKNGVIKKTVLEQYSRPRQNG--VNAITIREDDRVIEVRMTKGDNDIVIANRN 668

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G   +     +      A G   I  L  +  + +  ++   +         ++  ++HG
Sbjct: 669 GRAIRFNETAVREMGRTATGVRGIT-LDEDGQDEVVGMICIKD----PQKETIMVISEHG 723

Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R+ + D+ + NR GK    L+      +++++++ T END+++  K G  +R  ++ 
Sbjct: 724 YGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVAIKSVTDENDLMIINKSGITIRLKVAD 783

Query: 713 IRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +R+  GR + GVR I L K  D + S+  V     +  E+I      +        +T  
Sbjct: 784 VRIM-GRATQGVRLIDLGKRNDSIGSVCKVNSDTEEQMEQILPDAANAEDNSAGENETGN 842

Query: 772 I 772
            
Sbjct: 843 E 843


>gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141]
          Length = 822

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/902 (41%), Positives = 553/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
 gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM
           15053]
          Length = 833

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/896 (41%), Positives = 549/896 (61%), Gaps = 90/896 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ KDTVDF PN+D + +EPVVL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +ID+      +  ++ +++II+GPDFPTG +ILG  GI+ AY T
Sbjct: 182 NIPPHNLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R V+ IE     + +I+V+E+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKVRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G RV IEL+R A+A+VILNQLY++T LQ  F V M++L   +P    L+ +L  ++ 
Sbjct: 302 NREGMRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSLINNEPRVMNLLDMLNYYLE 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM+R   
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+VQ++AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYKELMEK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E++ ++D+    RRT I     D+  ED I R+D+V+T++
Sbjct: 456 IGELKAILADRKLLLGVIKEEIIIIRDKYGDERRTSIGFDEFDISMEDLIPRQDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    ++AQ RGGKG  G+   +ED+V +LF+ +TH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMSNDTFKAQHRGGKGIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG A+IN+L L   E+IT ++P  E +      Y+  +TK G V++  ++
Sbjct: 576 YEIPEASRTSRGTAIINLLQLMPEEKITAVIPIEEYK---EGEYLFMSTKKGLVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    E DI+L TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREEDELIEVKYTNNERDIILITKYGQCIRFNERDVRS-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++LA  D+VI M                                             
Sbjct: 692 VRGMNLADRDEVIGM--------------------------------------------- 706

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L  +   +L VSEKG GKRT   +F   NR GKG++   +++  + G +V 
Sbjct: 707 --------QLDSQGTHLLIVSEKGMGKRTGMDEFTSQNRGGKGVKCYKITE--KTGNVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V  V+ +D+I++++  G +IR+  + I    R T GV + +    E V S+ ++R+
Sbjct: 757 VKAVDLDDEIMIINTGGIIIRMKCDNISSLGRVTSGVKLINLPDGETVASIAKVRK 812


>gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
 gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04]
          Length = 822

 Score =  861 bits (2224), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 553/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 823

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++         ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+   D                                        
Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +      + 
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 906 AESTE 910
              TE
Sbjct: 818 EPETE 822


>gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
 gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271]
          Length = 820

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/898 (40%), Positives = 543/898 (60%), Gaps = 91/898 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  + I+DE++ S+L Y+++VI  RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y 
Sbjct: 5   EGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKSYS 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+ MGK+HPHG+++IYDA+ RMAQ++S R  LI+G GNFGSVDGD  AA RYTE
Sbjct: 65  KSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A ++L D+ KDTVDF PNYD   +EP VL +++PN+LVNG  GIAVGMATNIP 
Sbjct: 125 VKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDA--------LMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           HNLGEV+DG   +ID    +           L+++I+GPDFPT  +++G  GI+ AY TG
Sbjct: 185 HNLGEVIDGVNYLIDQQGAEAPDSDQEITEKLLKLIKGPDFPTAGLLMGTEGIQKAYTTG 244

Query: 245 RGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RGS+ IR  + IEK    ++ QI+VTEIP+ VNK+ ++EKIAELV+EK+I  I DLRDES
Sbjct: 245 RGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDLRDES 304

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+VIEL+R  +  +ILN LY++T ++  F +N++AL    P+  TL  +L+ F+A
Sbjct: 305 NRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDGTPKTLTLKAMLEYFIA 364

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV++RRT + L KA+D AH++ GL  A+  +DEV+ IIR S N ETAR  LM R   
Sbjct: 365 HQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLMTR--- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     SE Q++AIL++RL RLTGL R+ +  +   L  E
Sbjct: 422 -----------------------FEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDE 458

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   L +L S   +  IIK EL  ++ + D PRR+ I      M+ ED I  ED+V+TV+
Sbjct: 459 IAYHLAVLQSDKMVREIIKTELGEIRVKYDNPRRSIITIDTTKMDIEDLIADEDVVITVT 518

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+PL+ YR+QRRGG+G +G+   + DFV  LFI STH  +LFFS+ G VY+ + 
Sbjct: 519 HKGYIKRLPLTTYRSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRA 578

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P     A+G A+IN+L+L+Q E+IT  +   + +   ++ Y++  T+ G +++  L 
Sbjct: 579 HAIPDAGRTAKGTAMINLLNLSQDEKITATIAVKDFK---DDSYLLTVTRKGIIKKTALE 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++    + G IA+ LD  DE+++V     ++DILL T  G+ +RFP + +R   GR + G
Sbjct: 636 EYHTQRKDGLIALTLDDDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPM-GRTARG 694

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L K + V+ + ++   D D +                                  
Sbjct: 695 VRGMKLGKKEYVVGVDVIGGYDKDME---------------------------------- 720

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +LT++E GF KRT   +FRI NR G G+    V+K  + G L  
Sbjct: 721 ----------------LLTMTENGFAKRTRLDEFRIQNRGGMGVIGHKVNK--KTGKLAG 762

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  V   +++++++D G +IR  V+ I +  R+ +GV    T +D +VV++ +    +
Sbjct: 763 IKVVTSEEELMVITDDGIVIRQEVSGISVQGRSAQGVTAMKTGEDNKVVALAKFVSKD 820


>gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 876

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/907 (41%), Positives = 546/907 (60%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N  Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R LL++GQGNFGSVDGD PA
Sbjct: 63  SNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D + +EP V+  + PN+LVNG  GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNPDIDLD LM+ I+ PDFPTGA I G  G++ AY TGRG
Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE +  + ++IVVTEIPY VNKA ++E IAELV+E +I  I+++ DES RQ
Sbjct: 243 RVVMRAKAEIE-SDDNHDKIVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V++LKR ++A+VILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R 
Sbjct: 302 GMRIVVDLKRDSNANVILNKLFKMTALQSSFSVNCIALVKGRPRLLGLKDCVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT+Y L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L QR      
Sbjct: 362 DVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  D +  E   L   I  
Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              ILS       ++K ELL VK++    RRT I     +   ED    + +V+TVSHLG
Sbjct: 456 YNQILSDPELCKKVMKDELLEVKEKYGDARRTEIKYSSEEFNPEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +R Q RGG G  G   R++DF  +++  + H ++L F+  G  Y  K + +
Sbjct: 516 YIKRTPLSDFREQARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L++ + + +   +      DE   N+ YV+FATK+G V++  L  
Sbjct: 576 PEGDRNSKGRAIQNMLNIEKDDAVNGFLRLRTLTDEEFINSHYVIFATKNGTVKKTCLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ L   DE++ V     EN++++  + G+  RF  + IR   GR + GV
Sbjct: 636 YSRPRANGVIAINLAEGDELVDVRLTNGENELIIANRNGRACRFHENTIRTM-GRTATGV 694

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L    D V+ M  V +AD                                      
Sbjct: 695 RGMKLDGDDDAVVGMVPVNNADV------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE+G+GKR+   D+RI+NR GKG++   +++  + G LVA
Sbjct: 718 --------------ETVMVVSEQGYGKRSQVEDYRITNRGGKGVKTLAITE--KTGRLVA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D + +++++  G  IR+ V ++R+  RAT+GV + +   K++ + SV ++  SE+
Sbjct: 762 IKNVTDENDLMIINKSGIAIRLSVADVRVMGRATQGVRLINLSKKNDIIASVCKVMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EASVEEE 828



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 110/274 (40%), Gaps = 15/274 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+  L  Y   R  G     + + + D + D+ + +    ++
Sbjct: 611 EEFINSHYVIFATKNGTVKKTCLEAYSRPRANG--VIAINLAEGDELVDVRLTNGENELI 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      A G   +  + L+  +     M    +    +   V+ 
Sbjct: 669 IANRNGRACRFHENTIRTMGRTATG---VRGMKLDGDDDAVVGMVPVNNA---DVETVMV 722

Query: 651 ATKHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ G  +R+++ D+   NR       +A+   +   +++++  T END+++  K G  +
Sbjct: 723 VSEQGYGKRSQVEDYRITNRGGKGVKTLAITEKTG-RLVAIKNVTDENDLMIINKSGIAI 781

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  ++ +RV  GR + GVR I+L+K + +I+ ++     ++ +  +         ++   
Sbjct: 782 RLSVADVRVM-GRATQGVRLINLSKKNDIIA-SVCKVMSSELEASVEEESRAQWAKKSEE 839

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              +   S  +  +VE    EE   +       +
Sbjct: 840 IKADTTGSAASVETVESADDEEVKADTSDDNTPV 873


>gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 844

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/901 (42%), Positives = 557/901 (61%), Gaps = 88/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  +  V I+ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  +K +
Sbjct: 4   NKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF PNYDG   EP V+ AR+PN++VNG  GIAVGMATNIP
Sbjct: 124 EARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL E +D   AV+D+PDI +  LM   I+GPDFPTG +ILGR+GI+ AY TGRGSI+ 
Sbjct: 184 PHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIILGRSGIRQAYETGRGSIIT 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+E+    + +IVVTEIPYQVNKA ++ KIA+LVREK++  I  L DES+R G R+
Sbjct: 244 RSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGIRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++    +V++NQL+R TSLQ+ F VNM+AL    P++  +  +L+ +V  + +VVV
Sbjct: 304 VIELRKDVQVEVVMNQLFRLTSLQTSFGVNMLALVNGAPKQMGIKEMLQHYVDHQIDVVV 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA DRAH+L GL IA+ ++DE++R+IR S N   AR  LM+R          
Sbjct: 364 RRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMER---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AILE+RL RLTGL RD I NE   L   I +  DI
Sbjct: 414 ----------------FKLTEIQANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++ SR++ IIK EL  VK+    PRRT I E    MEDED I  ED+V+T++  GY+KR
Sbjct: 458 LANHSRVIQIIKDELTEVKNRFGDPRRTEISEADYSMEDEDLIPVEDVVITMTTNGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P   
Sbjct: 518 MPIDTYRTQNRGGRGVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAG 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L+L++ E++  ++P   +     + Y++F T++G V+R  +S+F  I +
Sbjct: 578 RTAKGLPVVNLLNLDKEEKVRALVPVNPES---ESEYLLFVTQNGLVKRTPMSEFDSIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   DE++ V+  T +++I++    G+ VRF    IR   GR + GV+G ++ 
Sbjct: 635 NGKIAITLRDDDELMGVKETTGDDEIIIAGSNGKAVRFHEDGIRAM-GRTASGVKGFNV- 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G  V+ +A                                                   
Sbjct: 693 DGSVVVGVATSRDGT--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSE G+GKRT+  ++R++ R  KG++  ++++  + G LV+V  VN +
Sbjct: 708 --------HLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINITQ--KTGDLVSVRAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAEST 909
           + ++++++ G +IR+ V  I I SR T+GV + +  +DE V  +  +  E E  D AE +
Sbjct: 758 EDVMIITNTGIIIRIAVENIGIYSRNTQGVKLINVGEDESVAKIAIVDKEEEAEDTAEVS 817

Query: 910 E 910
           E
Sbjct: 818 E 818


>gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271]
 gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271]
          Length = 826

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 536/900 (59%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  +SI +EM+ +YL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K Y
Sbjct: 2   QRDKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG++A+YD+L RM QD+SLR  LI+GQGNFGS+DGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVV G +A+I+NP+I +D +ME I  PDFPTG +I G  G+K AY TGRG +VIR
Sbjct: 182 PQNLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIYGYEGVKQAYRTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE IVVTE+PYQVNK  ++EKI +LV +K+I  IAD+RDESDR G R+
Sbjct: 242 ARAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V ++AL    P+  T+  +++A++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLTIKEMMEAYILHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L+ A  +AH+L GL I + NLDEV+  IR SPN   A+  LM+R          
Sbjct: 362 RRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+EVQ++AILE+RL RLTG+ R  I N+       I+E   I
Sbjct: 412 ----------------FALTEVQSKAILEMRLQRLTGMERSKIDNDYKETLAHIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R + IIK+ELL VK      RRT IV    +   ED I +ED+V+TV+H G++KR
Sbjct: 456 LANPERQMEIIKEELLRVKAVFGDERRTEIVPQEGEFSIEDMIAQEDVVITVTHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DFV  +FI STH  +LFF+S+G  +  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L +GE I   +     +   + L++V AT  G +++ ++  F +  R
Sbjct: 576 RTARGRSLANIMELQKGETIRAYINVKTFD---DPLFIVMATARGLIKKTEIEAFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       E+DI++    G  VRF    +R   GR ++GV+GI+L 
Sbjct: 633 NGIAAISIEDGDELIEARLTDGEHDIIMAKNSGYAVRFAERDVRAM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             +  ISM     +D                                             
Sbjct: 692 DDEYCISMVTSKRSDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  ++G LV +  VND 
Sbjct: 709 ---------LLAVTDNGFGKRSLVDDYRLTRRGARGVITLKAHE--KVGNLVGLLDVNDG 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D +I+++  G + R  V+ IR+  R T GV +    + +++ +  R+ +++  D  +  E
Sbjct: 758 DDLIIITANGIVNRQHVSNIRLTGRNTSGVRLIRLMQGDKISATARVPKTDDPDVIDGPE 817


>gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
 gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196]
          Length = 861

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/891 (41%), Positives = 534/891 (59%), Gaps = 55/891 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  ++I +EM+ SYL Y+++VI+GRA+PD+RDG KPVHRRIL+ M +MG++ NKKY KC
Sbjct: 2   NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ G+ MG YHPHG++AIYD L R+AQ +SLR  +I+GQGNFGSVDGDPPAA RYTECR
Sbjct: 62  AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+  +TVDF PNYD S  EP VL  + PN++VNG  GIAVGMATNIP HN
Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++  + +++NP   L  +++ ++GPDFPTG  I GR+GI NAY TGRG  ++R  +
Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIYGRSGIANAYRTGRGRFLMRAKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    R  I+VTEIPYQVNKA ++E++A+LV +K I +I+D+RDESDR G R+VIEL
Sbjct: 242 SIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA A ++LNQLY++T +Q  FS+  +A+   +P    L   ++ F+  R +VV RRT 
Sbjct: 302 KRGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQPRELPLPDAIRHFIDHRVDVVRRRTA 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ----RSWNASDIKDL 430
           YLL KAR+R H+L+G  IA+ +LD V++IIR S +   AR  L Q    R+    D    
Sbjct: 362 YLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEALA 421

Query: 431 IDLIDDSSYTIGS----DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              +D   Y I      + T+ LS  Q  AILEL+L RLT L  D++  EL  +   I E
Sbjct: 422 GVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERIAE 481

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+S  +L  +I +EL  V+      RRT+IV+   +++ ED I  E + VTVSH G
Sbjct: 482 YESILASEKKLRSVIVKELEDVRKAYGDERRTQIVDETAELQLEDLIADEQVAVTVSHSG 541

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR P+S YR Q+RGG GR G+  R+EDFV  L + STH  +L F++ G VY  K++ +
Sbjct: 542 YLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNTGRVYWLKIYEI 601

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +GK++ ++L+L  GE++  IM   +        ++ FAT++G V++  L DF 
Sbjct: 602 PDVGAAGKGKSIASLLNLQPGEQVRAIMAVRDLT--EEGKFIFFATRNGTVKKTPLKDFS 659

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +   G IA+ +D  DE++          + L T  G  +RF  + +R   GR + GVRG
Sbjct: 660 NVMARGIIAIGIDEEDELMGATITDGSQIVFLATHEGMAIRFDENDVRSM-GRPARGVRG 718

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L K D V+ MA         D+                                    
Sbjct: 719 IDLGKKDHVVGMAATPKDRGVGDDGKACAC------------------------------ 748

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL+V++ G+GKRT   ++R+  R GKG+     +  N  G +V++  
Sbjct: 749 ------------LILSVTQNGYGKRTDVDEYRLQTRGGKGVINVKTTAKN--GKVVSIQL 794

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           V+D  +++++S  G +IR+    +R A R+T+GV + +   +++V +   I
Sbjct: 795 VDDTSELMVISQYGKIIRIDTKGVRAAGRSTQGVRLLNLDTEDKVAAAVVI 845


>gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 886

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/936 (39%), Positives = 557/936 (59%), Gaps = 122/936 (13%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +++  I  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKP HRRIL+ M  +G+  +K 
Sbjct: 3   DQQGIIKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG++A+YD + RMAQD+S R  L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  ++ D+ K+TV+F+ NYDGS +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H LGEV+DG +A+  NPDI +  LM+ I GPDFPT   ILGR+GI+ AY TGRGS+++
Sbjct: 183 PPHQLGEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSLIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+T  DRE+I+VTE+PYQVNKA ++EKIA+LVREK+I  I DLRDESDR+G RV
Sbjct: 243 RAKAEIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E++R A+A VILN LY+ TS+Q+ F VNM+A+   +P   TL  +L  ++  ++E+V 
Sbjct: 303 VMEIRRDANASVILNNLYKQTSMQTTFGVNMLAIVSGRPRTLTLKEMLYHYLEHQKEIVR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA  R H+L GL IA+ +LDEV++IIR +   + AR +LM+R          
Sbjct: 363 RRTQFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q++AIL++RL RLTGL R+ I  E + +   I E   I
Sbjct: 413 ----------------FELSEKQSQAILDMRLQRLTGLEREKIDAEYDEIMALITELKRI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S   LL +I+ EL  VK+  +  RRT I    ++ EDED I  +D+++T++  GY+KR
Sbjct: 457 LESDEVLLELIRTELEEVKERFNDQRRTEIRMDHIEFEDEDLIPEKDIIITLTSSGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    YRAQRRGG+G  G+   D D+VT L   STH ++LFF++ G VY+ + + +P  S
Sbjct: 517 LTTDSYRAQRRGGRGVQGIGTNDADYVTRLLSCSTHDTILFFTNRGKVYRIRGYEVPEMS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFP--------------------------------- 637
             ++G  +IN++ + + E++ T++P                                   
Sbjct: 577 RTSKGVPIINLIQIERDEKVETMIPVNFKRYLEEQEAAEATENIIDVEVTAEDAPDGLEE 636

Query: 638 -------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
                  E+        ++F T+ G V+R+ LS + +IN++G IA++L   DE+ SV   
Sbjct: 637 PEEALDAEEVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNGLIAIRLFEDDELTSVRLA 696

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           + E+++   +  G+ +RFPI+ +R   GR + GV+ ++L+    VI M +          
Sbjct: 697 STEDEVFTVSNTGKAIRFPITNVRSM-GRGARGVKAMNLSADAIVIGMELARDEQD---- 751

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                            +L ++EKGFGK
Sbjct: 752 -------------------------------------------------VLVITEKGFGK 762

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           RT   +FR  +R GKG+ A+ V+    +G +VA+  V+ +D I+++++ G +IR     I
Sbjct: 763 RTPMTEFRTQSRGGKGLIASKVTDR--VGQIVALRIVDVDDDIMIMTESGIVIRTDSQNI 820

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
               R  +GV +    + +RV +V ++++ + V+E 
Sbjct: 821 SSVGRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEE 856



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 106/254 (41%), Gaps = 15/254 (5%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E     +  ++ ++  G VKR PLS Y    + G     + + ++D +T + + ST   V
Sbjct: 645 EVMQDEQKSLIFMTRKGRVKRSPLSAYARINKNG--LIAIRLFEDDELTSVRLASTEDEV 702

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
              S+ G   +  +  +      ARG   +N         ++        E + +   V+
Sbjct: 703 FTVSNTGKAIRFPITNVRSMGRGARGVKAMN---------LSADAIVIGMELARDEQDVL 753

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCV 706
             T+ G  +R  +++F   +R GK  +     D    I+++     ++DI++ T+ G  +
Sbjct: 754 VITEKGFGKRTPMTEFRTQSRGGKGLIASKVTDRVGQIVALRIVDVDDDIMIMTESGIVI 813

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R     I    GRN+ GV+ I + +GD+V ++A +   DA  +E I   +  +       
Sbjct: 814 RTDSQNISSV-GRNAQGVKVIRIEEGDRVATVAKLKKEDAVEEEGIVLEEGETGSEEQPV 872

Query: 767 GDTEEITSLKNDSS 780
             +E  +  +    
Sbjct: 873 STSEMNSESEQTEE 886


>gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 823

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 536/905 (59%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRI++GM ++GV 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKFLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++         ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+   D                                        
Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +      + 
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 906 AESTE 910
              TE
Sbjct: 818 EPETE 822


>gi|118467811|ref|YP_884429.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|1346234|sp|P48354|GYRA_MYCS2 RecName: Full=DNA gyrase subunit A
 gi|1122892|emb|CAA63918.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118169098|gb|ABK69994.1| DNA gyrase, A subunit [Mycobacterium smegmatis str. MC2 155]
          Length = 842

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/913 (38%), Positives = 524/913 (57%), Gaps = 92/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     ++N     +   +A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + ++Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KLSDF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+   + D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNEDDRLLSLNVVRP------------------------------ 720

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++L  +  G+ KRTS  ++ +  R GKGI      
Sbjct: 721 -----------------------DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  + G+LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ + +++
Sbjct: 758 R--KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIA 815

Query: 894 VERIRESEIVDEA 906
           + R  + +   E+
Sbjct: 816 IARNADEDEAAES 828



 Score = 81.4 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 91/237 (38%), Gaps = 13/237 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  LS + + R GG     + +R+ D +    + S    +L
Sbjct: 616 KSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGG--IVAINLREGDELVGAVLCSAEDDLL 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G   +       +  P  R  + +  +  N+ +R+ ++           + Y++ 
Sbjct: 674 LVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNEDDRLLSLNVVR------PDTYLLV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R GK  + +        ++       + ++   T  G  +R
Sbjct: 727 ATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITSTGGVIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                +R  AGR + GVR ++LA+GD +I++A     D   +         +     
Sbjct: 787 TAARQVR-KAGRQTKGVRLMNLAEGDTLIAIARNADEDEAAESISESDADTAESPEA 842


>gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
 gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175]
          Length = 861

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/899 (40%), Positives = 532/899 (59%), Gaps = 89/899 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +   +E  E       +   M+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MSEEVKHFEETFES----TDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K + K ARI G+VMGKYHPHG++AIYDA+ RMAQD+S R  LI+G GNFGSV
Sbjct: 57  SELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDT++FR NYD + +EP VL AR PN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGAT 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+     ++ NPD+    LME + GPDFPTG ++LG++GI+ A
Sbjct: 177 GIAVGMATNIPPHNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVLGKSGIRRA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +RG   IE+    +E+I++TE+PY VNKA ++E+IA+L  EK+I  I  L 
Sbjct: 237 YETGRGSITVRGRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLN 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIE++R  SA V+LN LY+ T LQS F  NM+A+   +P+  +L  IL+ 
Sbjct: 297 DESDRVGMRVVIEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAIVNQEPKVLSLKEILRH 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEVV RR+ +   KA DRAH+L GL IA+ ++D +V I+R S + + A+   M  
Sbjct: 357 YLDHQEEVVRRRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNE 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++R+ RLTGL R+ I  E N L
Sbjct: 417 --------------------------YGLSDKQAQAILDMRMVRLTGLEREKIDAEYNEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMV 539
              I+    +L+S      II+QELL ++   D PRRT ++ G     EDED I +ED+V
Sbjct: 451 QATIQYLEKVLASEELRYEIIEQELLEIQQRFDNPRRTELLVGEALSLEDEDLIEQEDVV 510

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++  GY+KR+  + ++AQRRGG+G  G+ + D+D+V ++   STH S+LFF++ G VY
Sbjct: 511 ITLTKNGYIKRLANTEFKAQRRGGRGVQGMSVHDDDYVENMISCSTHDSLLFFTNTGKVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  A+G  +IN+L+++  E+I  I+  PE  S     Y+ F T  G V+R
Sbjct: 571 QAKGYEIPEYSRTAKGLPVINLLNIDSAEKIQAIISVPE--SDETERYLFFTTLRGTVKR 628

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +LS+F  I  +G  A++L   DE++ V   +  + I+L T  G  V F    +R   GR
Sbjct: 629 VRLSEFKNIRTNGLRAIQLREDDELIRVVVTSGNDGIILGTYHGNAVSFHEDKVRAM-GR 687

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+SL  GD VI M I+                                      
Sbjct: 688 TASGVRGVSLRDGDYVIGMDILTP------------------------------------ 711

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +L VSEKG+GKRT++ ++ +  R GKG+R   +++ N  G
Sbjct: 712 -----------------DNEVLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKN--G 752

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV +  V  ++ ++++++KG +IR    ++    R   GV +    +D  V S+  + 
Sbjct: 753 PLVCLRTVTGDEDLLIMTNKGVIIRFHAEDVSQTGRGALGVRMMRLDQDAIVSSLAIVD 811



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 98/268 (36%), Gaps = 15/268 (5%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              +    E  +   +  G VKRV LS ++  R  G     + +R++D +  + + S + 
Sbjct: 606 SVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNG--LRAIQLREDDELIRVVVTSGND 663

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++  +  G        ++      A G   +++   +    +  + P         +  
Sbjct: 664 GIILGTYHGNAVSFHEDKVRAMGRTASGVRGVSLRDGDYVIGMDILTP---------DNE 714

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           V+  ++ G  +R   S++    R GK    L        ++ + T T + D+L+ T  G 
Sbjct: 715 VLVVSEKGYGKRTAASEYALKGRGGKGVRTLRITEKNGPLVCLRTVTGDEDLLIMTNKGV 774

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF    +    GR ++GVR + L +   V S+AIV   +   +          +    
Sbjct: 775 IIRFHAEDV-SQTGRGALGVRMMRLDQDAIVSSLAIVDREEETEEGSEATDSSTESVATE 833

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQE 792
               +    ++K +         +   E
Sbjct: 834 NPTASLSDEAIKGNMKDFAQQLVDEENE 861


>gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 836

 Score =  861 bits (2223), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/902 (39%), Positives = 538/902 (59%), Gaps = 86/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++K + +V++ +EM+ S+  YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G   +K
Sbjct: 7   NMQDKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEVMGKYHPHG+++IY+A+ RMAQ WS R +L +G GNFGS+DGD  AA R
Sbjct: 67  PHKKSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L D+ K+TVDF  N+DG+ +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D    +++NP+  +  LM +I GPDFPTGA+++G++GI+ AY TG+GSI 
Sbjct: 187 IPPHNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVMGKSGIRRAYETGKGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+ +G +E+IVVTE+PY VNKA ++E I  L  EKRI  +  +RDES+R+G R
Sbjct: 247 LRAKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE++R  SA VILN L++ TSLQ+ F  NM+A+    P+  +L  IL  ++  + EVV
Sbjct: 307 VVIEVRRDLSAHVILNNLFKLTSLQTSFGFNMLAIEKGIPKILSLKEILVDYIEHQIEVV 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +   +A  RAH+L GL IA+ N+D ++ IIR S     A++ +M           
Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMM----------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 416 ---------------DEFLLSEKQSQAILDMRLRRLTGLERDKIEAEYQDLVALIADLAD 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYV 548
           IL+   R+  II++EL  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+
Sbjct: 461 ILAKPERVKKIIREELEEVKRKFADKRRTELLVGEVLTLEDEDLIEEEDVLITLSNKGYI 520

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +RAQ RGG+G  G+ M D+DFV  L   STH  +LFF++LG VY+ K + +P 
Sbjct: 521 KRLANDEFRAQNRGGRGVQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPE 580

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L L+ GE+I TI+    D+      Y+ F T++G V+R   S F  I
Sbjct: 581 YGRTAKGLPIVNLLKLDDGEKIATIINVDRDQ---AAKYLFFTTRNGIVKRTSTSQFSNI 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+KL   DE+++V   + E+++++ T LG  VRF  + +R   GR + GV+G++
Sbjct: 638 RTNGLKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFKGAVVRDM-GRAAAGVKGVN 696

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+  + +                                               
Sbjct: 697 LREGDYVVGTSRID---------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q +L +SE G GKRT + ++    R GKG++  +V++    G L  +  VN
Sbjct: 711 -------DSQEVLVISENGLGKRTQASEYPTKGRGGKGMKVMNVTER--TGKLAGLTAVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ +++++D G +IR  V  I    RA +GV +     + ++V+   +      +E ++
Sbjct: 762 GDEDLMVITDTGVIIRTNVANISQTGRAAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDA 821

Query: 909 TE 910
            E
Sbjct: 822 PE 823



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR   S +   R  G     + +RD D + ++   S    V+  + LG+  + K
Sbjct: 621 TRNGIVKRTSTSQFSNIRTNG--LKALKLRDGDELINVLRTSGEDEVIIGTHLGYSVRFK 678

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +N+   +                  ++  V+  +++G  +R + 
Sbjct: 679 GAVVRDMGRAAAGVKGVNLREGDY---------VVGTSRIDDSQEVLVISENGLGKRTQA 729

Query: 663 SDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++    R   G   M +  R  ++  +     + D+++ T  G  +R  ++ I    GR
Sbjct: 730 SEYPTKGRGGKGMKVMNVTERTGKLAGLTAVNGDEDLMVITDTGVIIRTNVANI-SQTGR 788

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
            + GV+ + L    Q+++ A+V     D +     +   +
Sbjct: 789 AAQGVKVMRLDDEAQIVTFALVDPVIEDEEVDAPELTDET 828


>gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 823

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 535/905 (59%), Gaps = 86/905 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++ V 
Sbjct: 3   NENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELAVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G
Sbjct: 183 TTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILMGRGGVLHAYESGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+I+V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQS 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +QS F++NMVA+    P+  TL  +L+ ++A +E
Sbjct: 303 GMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDGAPKSLTLKQMLQYYLAHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL +A+ ++DE+V +IR S + + A+  L+ R      
Sbjct: 363 DVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q +AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FDLDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I    ++ +EDED I  +D+++T+SH 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDKRRTQITASEVVTIEDEDLIEEQDVLLTLSHQ 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+ +  ++ Q RGG+G  G+ ++  DF+  L   STH  + F+++ G VY +K + 
Sbjct: 517 GYVKRMLIDDFKTQNRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE I T++         ++ Y  F TK G V+R K+ +F
Sbjct: 577 IPEYGRSAKGLPIVNLLQLDKGEHIQTVVNL---PQGHDDDYAFFITKLGTVKRTKIREF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +G IA+ L   DE+ +V T   + +IL+ T  G  V F    +R   GR++ GVR
Sbjct: 634 ENIRTNGLIALTLKDGDELSNVLTTDGQQNILIATHQGYAVTFNEDDVRAM-GRSAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD V+   I+   D                                        
Sbjct: 693 GINLREGDYVVGSGILKPED---------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +LT+SEKG+GKRT++ ++ +  R GKGI+   + + N  G L  V 
Sbjct: 713 -------------EVLTISEKGYGKRTAASEYPVKGRGGKGIQTAKIGEKN--GPLAGVA 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+    I+L++  G +IR   +++    R+T GV +   A    V S+  +      + 
Sbjct: 758 VVDGQSDIMLITTDGIMIRFKTSDVSQTGRSTMGVRLIKVADGNAVASMAVVPAEAEGES 817

Query: 906 AESTE 910
              TE
Sbjct: 818 EPETE 822


>gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GFLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis]
          Length = 845

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/894 (39%), Positives = 540/894 (60%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNFLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   +                                          
Sbjct: 695 DDDGQDEVIGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++   
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSE 815


>gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301]
 gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
 gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942]
          Length = 856

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 530/906 (58%), Gaps = 69/906 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 4   QERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGS+D DPPAA RYTE
Sbjct: 64  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTE 123

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL+      LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMATNIP
Sbjct: 124 SRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++ G +A+I NP+I    LM  I GPDFPTG  +LG  GI++AY TG+GSI +R
Sbjct: 184 PHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGSAGIRDAYLTGKGSITMR 243

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ I+         R+ I++TE+PYQ NKAA++E+IAE+V EKR+  I+D+RDESDR G
Sbjct: 244 GVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRDG 303

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A   V+LN LY+ T LQS FS NM+AL   +P   TL   L+ F+ FR E
Sbjct: 304 MRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGEPVLLTLKRSLEVFLDFRIE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + RRT+Y L KA +R H+L GL IA+ NLD ++ +IR S +   A++EL+         
Sbjct: 364 TIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELI--------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ+ AIL+++L RLT L  + I  E   L   I++ 
Sbjct: 415 -----------------DVYGLSEVQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDY 457

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ R R+L II+ EL  ++     PRRT ++E   ++E  D I  E  ++ ++  GY
Sbjct: 458 RDILARRERVLEIIETELEQLQQRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + AQ RG +G++G   +D+D V        H ++LFFS  G VY    +R+P
Sbjct: 518 IKRMPVNEFTAQSRGTRGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ARG  ++ +L + + ERIT+I+P        ++ Y+V  T+ G +++  LS F  
Sbjct: 578 AASRNARGVPIVQLLPIPREERITSIVPVSAFS---DDEYLVMLTQGGYIKKTALSAFAN 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725
           I  +G IA+ L   D++  V     E+ IL+ ++ G  + F  S   +R   GR + GVR
Sbjct: 635 IRSNGLIAIALSEGDQLRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPL-GRATRGVR 693

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +SL  GD +ISM ++  +                                   + + + 
Sbjct: 694 AMSLRSGDTLISMDVLPASLTANMT----------------------------ETGDEDE 725

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +++  + +     ++L V+ +G GKR   + FR+  R+G G+RA      ++   LV++ 
Sbjct: 726 ADDAVEVVASPGPWVLVVTAQGLGKRVPVHQFRLQKRAGLGLRAIKF--RSKQDELVSLR 783

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR--ESEIV 903
            V   D+++++S +  +IR   + I   SRA  GV +     D+ + +V  +   E E+ 
Sbjct: 784 IVESGDELVMISQRSVIIRQASDAIPQQSRAATGVRVQRLDADDVLAAVALVPPGEEELD 843

Query: 904 DEAEST 909
           + +E  
Sbjct: 844 ETSEDA 849



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 18/255 (7%)

Query: 668 INRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                     L   D E+ +++    E  ILL T+ G   R P++       R + G  G
Sbjct: 480 QRFQEPRRTTLLEADGELETIDLIANEKSILLLTQQGYIKRMPVNEF-TAQSRGTRGKAG 538

Query: 727 ISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                 D V   ++     +     D  + Y                           E 
Sbjct: 539 AKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLPIPREE 598

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            I+          +++++ +++ G+ K+T+   F  +N    G+ A  +S+      L  
Sbjct: 599 RITSIVPVSAFSDDEYLVMLTQGGYIKKTALSAF--ANIRSNGLIAIALSEG---DQLRW 653

Query: 844 VFPVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRES- 900
           V      D I++ S KG  I      +++R   RAT+GV   S    + ++S++ +  S 
Sbjct: 654 VRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSGDTLISMDVLPASL 713

Query: 901 -----EIVDEAESTE 910
                E  DE E+ +
Sbjct: 714 TANMTETGDEDEADD 728


>gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 831

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/893 (40%), Positives = 549/893 (61%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKHLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDG+ +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME++ GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAEAIDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVMGRSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  RE+IVVTE PY +NK  + E I  L +E RI  I  +RDES RQG R V
Sbjct: 242 SRTEIETTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+ G  P+  +L  I+  ++  +++V+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEGGIPKILSLRQIIDNYILHQKDVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R+  IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNNGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  +IN+L L+ GE I TI+   +++    + Y  F TK G V+R ++S+F  I +
Sbjct: 576 RAAKGLPVINLLKLDDGETIQTIINAKKEDIL--DKYFFFTTKQGIVKRTEVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ T+ G  VRF  + IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEGDELINVLLTNGQEDIIIGTRSGYSVRFNEATIRGM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D V+  + +                                                 
Sbjct: 693 EEDWVVGASRIN------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ N
Sbjct: 705 -----DKQEVLVITENGYGKRTSAAEYPTKGRGGKGIKTANITAKN--GQLAGLMTVDGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + I++++ KG +IR  V+ I    R+T GV +     D ++V+   ++  +  
Sbjct: 758 EDIVVITTKGVIIRTNVSSISQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDND 810



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 103/239 (43%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---IIAQAELMSRFDLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +  +  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERIEAIIKEEMEEIKRKYANPRRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S  G+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            +D ++  ++ G + R+   EI    RA KG+ + +       E + ++   ++ +I+D
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLKLDDGETIQTIINAKKEDILD 608



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 17/237 (7%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +      +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  
Sbjct: 608 DKYFFFTTKQGIVKRTEVSEFSNIRQNG--LRALNLKEGDELINVLLTNGQEDIIIGTRS 665

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+  +     +      A G   +  + L + +               +   V+  T++G
Sbjct: 666 GYSVRFNEATIRGMGRSATG---VRGVKLREEDW------VVGASRINDKQEVLVITENG 716

Query: 656 NVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             +R   +++              +   +  ++  + T     DI++ T  G  +R  +S
Sbjct: 717 YGKRTSAAEYPTKGRGGKGIKTANITAKNG-QLAGLMTVDGNEDIVVITTKGVIIRTNVS 775

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +I    GR+++GV+ + L    ++++  +V   D D          ++      S +
Sbjct: 776 SI-SQTGRSTLGVKVMRLDTDSKIVTFTLVQAEDNDPTAITQTDTALAEAPINSSKE 831


>gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 867

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/911 (40%), Positives = 543/911 (59%), Gaps = 89/911 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+     ++    I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM
Sbjct: 1   MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSV
Sbjct: 57  HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A +DNPDI +  LM+ I+GPDFPTG  ILG TG++ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQILGITGLRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R    I +T  +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLR
Sbjct: 237 YETGKGIIAVRAQHEIVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  
Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A + E++ RRT++ L KA  R H+L  L  A+ ++D V++II+ + NPE AR  L+  
Sbjct: 356 YIAHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIA- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    T   +E+Q R+IL ++L RLTGL  D I  E ++L
Sbjct: 415 -------------------------TYDFTEIQARSILTMQLQRLTGLEIDKIHEEADNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMV 539
             +I E   IL      + IIK EL  +KD+ D PR + +      D+++ED I  ED+V
Sbjct: 450 AHKITEYKQILGDEDLKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDIV 509

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV++ GY+KR+ L  Y+ Q RGG G SGV + D+DFV  + + STH   LFF++LG V+
Sbjct: 510 VTVTNNGYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVF 569

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + LP GS Q++G  ++N L+   GE++ +     + +    + Y+ F TK G V+R
Sbjct: 570 KLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFD--AEDHYLFFVTKRGIVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++++  I ++G IA+ L   DE+L  ++      ILL    G+ + F  + IR   GR
Sbjct: 628 THINNYKNIRQNGIIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREI-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ +   ++++  A+V   + D                                
Sbjct: 687 TATGVRGMDIPDDEEIVGFAVVDGIEDD-------------------------------- 714

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               IL ++E G+GKRTS  ++R+ NR GKG++  +V+  N  G
Sbjct: 715 --------------------ILVITENGYGKRTSITEYRLQNRGGKGVKTLNVTDKN--G 752

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V +++ II+VSD+G  IR+P+++I    RAT+GV I +   D++V ++  +  
Sbjct: 753 KLKTLRKVTNDEDIIVVSDRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDH 812

Query: 900 SEIVDEAESTE 910
            E  +E  S E
Sbjct: 813 QEPEEEVVSNE 823



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 68/429 (15%), Positives = 145/429 (33%), Gaps = 25/429 (5%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFS--------PNPETARRELMQRSWNASDIK 428
             +A + AH +      + + D  + II+           +P  +   L +     ++  
Sbjct: 443 HEEADNLAHKITEYKQILGDEDLKIEIIKSELQEIKDKYDDPRMSEVNLYEDLDIDNEDL 502

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             ++ I  +    G    M L E + +    + ++ +     D + +   +   +     
Sbjct: 503 IPVEDIVVTVTNNGYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFF 562

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED---EDCIVREDMVVTVSHL 545
             L    +L G            +          G         +D    +  +  V+  
Sbjct: 563 TNLGRVFKLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDAEDHYLFFVTKR 622

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G VKR  ++ Y+  R+ G     + +R++D +      + H  +L  +S G         
Sbjct: 623 GIVKRTHINNYKNIRQNG--IIAISLREDDELLVTKSTNGHKHILLGASNGKAIHFLETD 680

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +      A G   +  + +   E I         E       ++  T++G  +R  ++++
Sbjct: 681 IREIGRTATG---VRGMDIPDDEEIVGFAVVDGIEDD-----ILVITENGYGKRTSITEY 732

Query: 666 IQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              NR GK    L+  D+     ++   T + DI++ +  G  +R PI  I     R + 
Sbjct: 733 RLQNRGGKGVKTLNVTDKNGKLKTLRKVTNDEDIIVVSDRGITIRMPIDQI-SQTKRATQ 791

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR I+L    +V ++AIV H + + +           Q  L +                
Sbjct: 792 GVRIITLKGDQKVSTIAIVDHQEPEEEVVSNEAVVTQEQMALSNQKKVLEVVELEALEES 851

Query: 783 GNISEERCQ 791
            +  + +  
Sbjct: 852 VDEEDTKNA 860


>gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39]
 gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
 gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A
 gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6]
 gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39]
 gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00]
          Length = 822

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/902 (41%), Positives = 551/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE  D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+   G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRCVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
 gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135]
          Length = 848

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/893 (40%), Positives = 547/893 (61%), Gaps = 86/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K 
Sbjct: 2   QEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGS+DGD  AA RY
Sbjct: 62  YKKAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL+K    ++ DL K+TVDF  N+D + QEP V+  R PN+LVNG  GIAVGMATN+
Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+D CVA IDN +ID+D LM+ I+ PDFPTG  I G +G+++AY TGRG +V+
Sbjct: 182 PTHNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIYGISGVRDAYETGRGRVVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE      ++IVVTEIPY VNKA +++ IA+L  +K+I  I+++ DE+DR+G R+
Sbjct: 242 RAKAEIESHPT-HDKIVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R EVV+
Sbjct: 301 VIDIKRDANASVVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHEVVI 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM R          
Sbjct: 361 RRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMAR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +  E   L  +I    +I
Sbjct: 411 ----------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS+      +IK ELL VK++    RR+ IV    +   ED    ++MV+T+SH+GY+KR
Sbjct: 455 LSNEELCKKVIKDELLEVKEKYGDNRRSEIVYASEEFNPEDFYADDEMVITISHMGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PLS +RAQ RGG G  G   R+EDF+  ++  + H ++LFF+  G  Y  KV+ +P G+
Sbjct: 515 TPLSEFRAQNRGGVGSKGSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGN 574

Query: 611 PQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N+L++   + +T  +      D    N+ YV+F TK+G +++  L  + + 
Sbjct: 575 KTSKGRAIQNLLNIEADDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G  A+ +   D ++ V      N+I++  + G+ +RF  SA+R   GR + GVRGI+
Sbjct: 635 RQNGVNAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREM-GRTATGVRGIT 693

Query: 729 LAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           L +   D+VI M  +   +                                         
Sbjct: 694 LDEDGQDEVIGMICIKDPET---------------------------------------- 713

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + I+ VSE G+GKR+   D+R +NR GKG++  +++  ++ G+LVA+  
Sbjct: 714 -----------ETIMVVSENGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGSLVAIKS 760

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           V D + +++++  G  IR+ V ++RI  RAT+GV +    K ++++ SV ++ 
Sbjct: 761 VTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLIDLEKRNDQIGSVCKVA 813



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/244 (18%), Positives = 103/244 (42%), Gaps = 12/244 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + + +  ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGNNEIVIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     +      A G   I  L  +  + +  ++   +         ++  +++G  
Sbjct: 671 AIRFHESAVREMGRTATGVRGIT-LDEDGQDEVIGMICIKD----PETETIMVVSENGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTLNITDKTGSLVAIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I L K  DQ+ S+  V   + +  ++         Q            
Sbjct: 786 IM-GRATQGVRLIDLEKRNDQIGSVCKVASENEEEVQQEEETPATDIQPADGETIQPATD 844

Query: 774 SLKN 777
               
Sbjct: 845 EPNE 848


>gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46]
 gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343]
 gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16]
 gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R]
          Length = 845

 Score =  860 bits (2222), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/894 (39%), Positives = 541/894 (60%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++ DL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A +DN D+ ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIYGISGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIESGQT-HDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++  FV  R +VV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTALQTSFGVNNVALVNGRPKMLNLRDLIVYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       +IK ELL V+ +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVIKDELLEVRAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKSLNDQEYINSHYVLFCTKNGVIKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   +                                          
Sbjct: 695 DDDGQDEVIGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++   
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVTSE 815


>gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
 gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326]
          Length = 877

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/894 (43%), Positives = 545/894 (60%), Gaps = 67/894 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDARRTEITAASHDIDMEELIAREDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPV----------------------------- 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                           DE       + E  I + T  G   +  +     FA   S G+ 
Sbjct: 637 ----------------DEF------SPEKFIFMATGDGTVKKTSLDQ---FANVRSNGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I      D D  +        +           T+         + 
Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKAGKVVRFNEDKVRAMGRTAAGVRGMKLADE 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDE 840



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 67/427 (15%), Positives = 155/427 (36%), Gaps = 29/427 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL++  +  H+L      +  + E +  +R +                A
Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELETVRDAFGDA-----RRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSNAGYV-KYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   E E        D    E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFNEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +   +     + D +  T
Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEAELPEGEEAEAAESTTETSAEDAQTPT 870

Query: 774 SLKNDSS 780
           +  +   
Sbjct: 871 ADSDTEE 877


>gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14]
          Length = 841

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 21  QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 81  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 653 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 712 EGDTVVGAS--------------------------------------------------- 720

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 721 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836


>gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
 gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823]
          Length = 861

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/899 (41%), Positives = 546/899 (60%), Gaps = 92/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  ++I DEM+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM  +GV  N+ Y
Sbjct: 3   DGEKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ WSLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K A  +LDDL K+TVDF PN+D S QEP VL ++ PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  +  +DN DI+ + L++ ++ PDFPTG +I G  G ++A  TGRG IVIR
Sbjct: 183 PHNLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIYGVDGARDALLTGRGRIVIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ SG REQI+VTEIPYQVNKA M++K A+LV +K+I  I+D+RDESDR G R+V
Sbjct: 243 AKAEIEE-SGGREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELKR A  +V+LN+LY+YTSLQS FS+N + L   +P    L  ++  FV FR EVVVR
Sbjct: 302 YELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVDGRPRLLNLREMITEFVKFRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ IIR S +PE AR  LM+R           
Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q+RAI+E+RL +LTGL +D +R E   L   I +  DIL
Sbjct: 411 ---------------FALSDLQSRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + IIK EL+ ++ +    RR+RI     +M+ ED I  E++V+T+SH GY+KR 
Sbjct: 456 AREERRMQIIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++ Q RGG G  G   RD+DF+  LF+ + H  +L F+  G  +  +V+ +P G+ 
Sbjct: 516 NLDEFKVQSRGGMGSKGSTTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L++ Q ++I   +   +  D+    N ++V  TK G +++  L  + +  
Sbjct: 576 TAKGRAIQNLLNIEQDDKIKAYVKVKDLTDKEYVQNNFIVMCTKEGIIKKTSLEAYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L        N+++L TK G+ +RF  + +R   GRN+ GVR ++L
Sbjct: 636 ANGINAITIRENDELLEARLTDGTNEMVLATKAGRAIRFNEAKVRPM-GRNASGVRAVTL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+V+ M  V                                               
Sbjct: 695 QNDTDEVVGMICVKDNT------------------------------------------- 711

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEIGAL 841
                    + I+ VSEKG+GKR+   D       +RI+NR GKG++  +++  ++ G L
Sbjct: 712 ---------ETIMVVSEKGYGKRSFLNDPEDGEPVYRITNRGGKGVKTINIT--DKTGPL 760

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +A+  V D D +++++  G  IR+ ++ IR+  RA +GV + +      + +V R+  S
Sbjct: 761 LAIKTVADEDDLMIITKAGVTIRMHIDGIRVMGRAAQGVRLINLKGTAAIAAVARVPRS 819



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 92/207 (44%), Gaps = 18/207 (8%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760
           RF +S ++      S  +  + L      + D++ +  A ++    D  + +   +    
Sbjct: 410 RFALSDLQ------SRAIVEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREERRMQ 463

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
             +    D          S +E + SE + ++L   E+ ++T+S  G+ KRT+  +F++ 
Sbjct: 464 IIKDELIDIRTKYGDARRSRIEYSASEMKIEDLIPDEEVVITISHAGYIKRTNLDEFKVQ 523

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +R G G + +     + +  L   F   +++ +++ ++KG    + V E+   ++  KG 
Sbjct: 524 SRGGMGSKGSTTRDKDFLEHL---FVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTAKGR 580

Query: 881 VIFST---AKDERVVSVERIRESEIVD 904
            I +     +D+++ +  ++++    +
Sbjct: 581 AIQNLLNIEQDDKIKAYVKVKDLTDKE 607


>gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
 gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292]
 gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458]
 gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457]
 gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397]
          Length = 822

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL  ++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDTYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA]
 gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70]
 gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06]
 gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016]
 gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA]
 gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200]
 gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
          Length = 822

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 841

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 21  QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 81  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 141 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 201 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 321 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 381 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 430 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 475 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 535 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 595 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 652

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 653 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 711

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 712 EGDTVVGAS--------------------------------------------------- 720

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 721 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 776

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 777 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 836


>gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4]
 gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae
           TIGR4]
 gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A
 gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4]
 gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00]
 gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14]
 gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375]
          Length = 822

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54]
 gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54]
          Length = 822

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHXAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVT  PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVIIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6]
 gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585]
 gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B]
 gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6]
 gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195]
 gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585]
 gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570]
 gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545]
          Length = 822

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 878

 Score =  860 bits (2221), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/896 (42%), Positives = 542/896 (60%), Gaps = 70/896 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MAKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE I+V EIPYQVNKA ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE
Sbjct: 247 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +IRF+  P  A+  L+ + W    +  +++ 
Sbjct: 367 IFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL +  RL+ +I++ELL++K +    RRT I E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILENPERLMEVIREELLAIKAQYSDARRTEITENTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P                              
Sbjct: 607 LPEASRGARGRPIVNLLPLEQNERITAILP------------------------------ 636

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGV 724
                                V    +   + + T  G   +  +    R      S G+
Sbjct: 637 ---------------------VREYEEGLYVFMATASGTVKKTALQDFSRPR----SAGI 671

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             ++L  GD++I    V   D   +  +   +    +    +  +   T+          
Sbjct: 672 LAVNLNDGDELIG---VDLTDGSNEVMLFSAEGKVVRFAEEAVRSMGRTATGVRGIKLNG 728

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +     +   E  ILTV+E G+GKRT+  ++ I +R+ +G+ +  VS+ N  G ++  
Sbjct: 729 EDKVVSLIIPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIKVSERN--GNVIGA 786

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+VV ++R+ E 
Sbjct: 787 IQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKVVGLQRVAEP 842



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 91/244 (37%), Gaps = 15/244 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L  +   R  G     +   DE    DL        V+ FS+ G 
Sbjct: 645 YVFMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDL--TDGSNEVMLFSAEGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V +     +      A G   +  + LN  +++ +++             ++  T++G  
Sbjct: 703 VVRFAEEAVRSMGRTATG---VRGIKLNGEDKVVSLI------IPRGEGEILTVTENGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R   +++   +R+ +  + +   +     +        + I++ T  G  VR  +S + 
Sbjct: 754 KRTAENEYPIKSRATQGVISIKVSERNGNVIGAIQVEPTDQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ ++V+ +  V   + D D+           +   +   +  +S
Sbjct: 813 SVVGRNTQGVTLIRTAEDEKVVGLQRVAEPEDDEDDEDGLAAEGEEVKSDSTDLPDANSS 872

Query: 775 LKND 778
              D
Sbjct: 873 ESVD 876


>gi|207743943|ref|YP_002260335.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
 gi|206595345|emb|CAQ62272.1| dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 842

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/873 (41%), Positives = 531/873 (60%), Gaps = 65/873 (7%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +L++
Sbjct: 2   HRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVD 61

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD  AA RYTE RL K AH LL D+ K+TV+F PNYDGS  EP +L AR P
Sbjct: 62  GQGNFGSVDGDNAAAMRYTEIRLSKIAHELLADIDKETVNFEPNYDGSETEPSILPARIP 121

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+L+NG  GIAVGMATNIP HNL EVVDGC+ ++ NPD  +D L+E+I  PDFPT  +I 
Sbjct: 122 NLLINGSSGIAVGMATNIPPHNLREVVDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY 181

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREK 291
           G +G++  Y TGRG +V+R  +H E     + Q I+V E+PYQVNK  +LE+IAELV EK
Sbjct: 182 GISGVREGYRTGRGRVVMRAKTHFEDIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEK 241

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           R+  I+D+RDESD+ G RVVIELKRG   +V+LN LY+ T LQ  F +NMVAL   +P  
Sbjct: 242 RVEGISDIRDESDKSGMRVVIELKRGEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQPRL 301

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L+ F+  R EVV RRT + L KAR+R H+L GLA+A+AN+DE + II+ +P P 
Sbjct: 302 LNLRQMLECFLLHRREVVTRRTVFDLRKARERGHILEGLAVALANIDEFIAIIKAAPTPP 361

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSS---------------YTIGSDGTMYLSEVQTRA 456
            A++ELM RSW++  ++D++   +  +               + +  DG   LS+ Q + 
Sbjct: 362 IAKQELMGRSWDSGLVRDMLSRAESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQE 421

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL +D I  E   +  +I + LDIL+   R+  II +EL  ++ E    R
Sbjct: 422 ILQMRLQRLTGLEQDKIVQEYREVMAQIADLLDILARPERITAIIVEELTLIRSEFGDER 481

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R++I     +++ ED I  +D+VVT+SH GY+K  P+S YRAQ+RGG+G+     +++D+
Sbjct: 482 RSQIEHNATELDTEDLITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDW 541

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  LF+ +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L+ GE+I  I+P 
Sbjct: 542 IDTLFVANTHDYILCFSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPV 601

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            + +      +V  AT  G V++  L++F    ++G IA+ LD  D ++  +    ++D+
Sbjct: 602 KQFD---EQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLDEGDFLIGADITDGQHDV 658

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  + +R   GR + GVRG++L +G QVI+M +     A   E+     
Sbjct: 659 MLFSDAGKAVRFDENDVRPM-GRQARGVRGMNLEEGQQVIAMLVAPAETAGEGEQAVAGS 717

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +LT +E G+GKRT   +
Sbjct: 718 -------------------------------------------VLTATENGYGKRTPISE 734

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  KG+ A   S+ N  G +VA   V   D+I+L++  G LIR  V+EIR   RA
Sbjct: 735 YTRHGRGTKGMIAIQTSERN--GKVVAAALVAPEDEIMLITTGGVLIRTRVDEIREMGRA 792

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           T+GV + +  +  ++  ++R+ ES+   E  + 
Sbjct: 793 TQGVTLIAVGEGNKLSGLQRVVESDAEGEDAAD 825



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 104/244 (42%), Gaps = 13/244 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+  L+ +   R+ G     +   + DF+    I      V+ F
Sbjct: 604 FDEQHFVFMATSKGTVKKTALTEFSNPRKAGIIAVDLD--EGDFLIGADITDGQHDVMLF 661

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL----YV 648
           S  G   +     +     QARG   +N   L +G+++  ++  P + +          V
Sbjct: 662 SDAGKAVRFDENDVRPMGRQARGVRGMN---LEEGQQVIAMLVAPAETAGEGEQAVAGSV 718

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQC 705
           + AT++G  +R  +S++ +  R   G IA++      ++++      E++I+L T  G  
Sbjct: 719 LTATENGYGKRTPISEYTRHGRGTKGMIAIQTSERNGKVVAAALVAPEDEIMLITTGGVL 778

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +  IR   GR + GV  I++ +G+++  +  V+ +DA+ ++    +     +    
Sbjct: 779 IRTRVDEIREM-GRATQGVTLIAVGEGNKLSGLQRVVESDAEGEDAADGVTESDGEAPSA 837

Query: 766 SGDT 769
               
Sbjct: 838 DTTE 841


>gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
 gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644]
          Length = 914

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/913 (41%), Positives = 536/913 (58%), Gaps = 66/913 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  + +    E +    ++I +E++ SYLTYA++VI+ RA+PD RDGLKP  RRIL  M
Sbjct: 1   MSIAVATPPPSEPREPLPLNIEEELKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           + +G+       KCA I GE M +YHPHG+ +IY  LARMAQ W++R LL+ GQGNFGS+
Sbjct: 61  LDLGLTPGGSTSKCAGIVGETMKRYHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G PPAA RYTE +L   A  +LDD+  DTVDF+P+YD   QEP VL AR+PN+LVNG G
Sbjct: 121 HGLPPAAMRYTEAKLSPVAAEMLDDIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGEV D  +A+IDNP ID + L+E + GPDFPTG VI GR GI+ A
Sbjct: 181 GIAVGMATSIPPHNLGEVCDALIALIDNPAIDFEDLIEKLPGPDFPTGGVICGRMGIREA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R    +E+T   R QIV TEIPYQ+ K  +L+K+ +LV   RI  IAD+ 
Sbjct: 241 YLTGRGRIVLRAKHVVEETRDGRTQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVV 300

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DESD RQ  R+V++LKR    +VILNQLY+Y+ LQ  F V M+AL   +P+  TL  +LK
Sbjct: 301 DESDRRQPVRIVVKLKRNEDPNVILNQLYQYSPLQDTFGVIMLALVDGRPKTLTLRELLK 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  V+ RRT +LL + R RAHV+ GL IA+  +DE++ IIR SPNP  AR  LM 
Sbjct: 361 IYLDHRANVIRRRTAFLLRRDRARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMG 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +     ++  ++          +  T  L+  Q  AIL +RL +LTGL  D +  E   
Sbjct: 421 MAVGPDVMRRALN-------DPEAQATTGLTRNQADAILAMRLQQLTGLELDKLVAEYRE 473

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDM 538
           L   I +  DIL+   R+  IIK +L  +K +   PRRT I +      + E  I  E M
Sbjct: 474 LRAAIADAEDILAREVRVREIIKADLEELKRKYADPRRTVISDEELGSYDKEALIREEYM 533

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT++  GY+KR+P S YRAQ RGG+G++    ++ DF+  +F+  TH  +LFF+  G +
Sbjct: 534 VVTITDGGYIKRLPPSTYRAQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLI 593

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +  KV+ +PI    A G+A++N+L L +GERIT ++P        +N ++  AT+ G V+
Sbjct: 594 HWLKVYDVPIAPRTATGRAIVNLLELREGERITGVIPVRRFP---DNEFLFMATRRGTVK 650

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS + +  R G IA+ L+  D++++V      + ++L+T+ G  +RF  S +R   G
Sbjct: 651 KTPLSAYSRPQRGGIIALGLEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPM-G 709

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L   DQV+ M +    D                                 
Sbjct: 710 RPACGVRGIRLEGDDQVVGMVVANGPDDPAS----------------------------- 740

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +LTV   GFGKRT   ++R  +R GKG+     ++ N  
Sbjct: 741 ---------------------LLTVCSNGFGKRTRLSEYRAQHRGGKGLIDIKTTERN-- 777

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +VA+  V D D+++L +++G LIR  ++E R   R T+GV +    + +RVV++ ++ 
Sbjct: 778 GPVVAIAKVTDADEVMLTTERGILIRTGLSETRDIGRNTQGVRLIRVDEGDRVVALAKLP 837

Query: 899 ESEIV-DEAESTE 910
           ESE+  D+ +  E
Sbjct: 838 ESELSQDQPDVAE 850



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 105/268 (39%), Gaps = 12/268 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + +   +  G VK+ PLS Y   +RGG     + + + D +  +        V+  
Sbjct: 634 FPDNEFLFMATRRGTVKKTPLSAYSRPQRGG--IIALGLEEGDQLIAVARTQPGDHVILS 691

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   + +   +    P  R    +  + L   +++  ++         +   ++   
Sbjct: 692 TRNGMAIRFEESDVR---PMGRPACGVRGIRLEGDDQVVGMV---VANGPDDPASLLTVC 745

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFP 709
            +G  +R +LS++   +R GK  + + + +    V      T  ++++LTT+ G  +R  
Sbjct: 746 SNGFGKRTRLSEYRAQHRGGKGLIDIKTTERNGPVVAIAKVTDADEVMLTTERGILIRTG 805

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S  R   GRN+ GVR I + +GD+V+++A +  ++   D+                   
Sbjct: 806 LSETRDI-GRNTQGVRLIRVDEGDRVVALAKLPESELSQDQPDVAEVEPPPDSNAPPLAP 864

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
            +        +++     +     K +E
Sbjct: 865 SDRLLANGILALDDLSGTDSASHEKEEE 892


>gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 553/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEELDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDSS--DDAYLFFTTRHGIVKRTSIKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533]
 gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 829

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/897 (40%), Positives = 547/897 (60%), Gaps = 86/897 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG    +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I+                                            
Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++  
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKASD 814


>gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 850

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/902 (39%), Positives = 530/902 (58%), Gaps = 64/902 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + 
Sbjct: 5   QDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTE
Sbjct: 65  KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMRYTE 124

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL   A + LL D+  +TVDF  N+DGS QEPVVL +R P +L+NG  GIAVGMATNIP
Sbjct: 125 CRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++DG VA+I NPD+    L   I GPDFPTG  ILGR GI+ AY TGRGSI +R
Sbjct: 185 PHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHILGRDGIQEAYTTGRGSITLR 244

Query: 252 GVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           GV+ IE        DR+ I++TE+PYQ NKAA++EKIA+LV +++I  I+D+RDESDR G
Sbjct: 245 GVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDESDRDG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A   V+LN LY+ T LQS F  NM+AL   +P   TL   L+ F+ FR E
Sbjct: 305 IRVVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVDNEPRLLTLREFLRVFLDFRVE 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT+Y L KA +R H+L GL IA+A+LD V+ +IR + +  +A+  L+Q        
Sbjct: 365 VITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQ-------- 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSEVQ  AIL+++L RLT L  + I+ E   L  +I + 
Sbjct: 417 ------------------NFGLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+ + R+  II++EL  +K    TPRRT I +   ++ + D I  E  ++ V+  GY
Sbjct: 459 QDILAKKERIDSIIEEELQQIKTIHATPRRTHIEQREGEIAETDLIANEQALILVTEQGY 518

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P++ + +Q R  +G++G  M+++D +        H SVLFF+  G VY    + +P
Sbjct: 519 IKRMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIP 578

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ARG  ++ +L + +GE+IT+++   E      + Y++  T+ G +++  L+ F  
Sbjct: 579 TGSRTARGVPIVQLLEIPKGEKITSVVAVSEFS---EDNYLIMLTQKGFIKKTALAAFSN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVR 725
           I  +G IA+ L+  D++  V    +E+ +++ ++ G  + F      +R   GR + GV+
Sbjct: 636 IRSNGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSL-GRATKGVK 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L  GD++ISM I+              +       +                     
Sbjct: 695 SMKLRSGDELISMDILPSQIVAQIAESNEEETEDESEEIN-------------------- 734

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E+     ++L ++  G GKR      R+ NR+G G+R     K N    L A+ 
Sbjct: 735 -----PEVANNGPWVLAITMAGLGKRVPVTLLRLQNRAGLGVRVIKFRKKN--DKLAALH 787

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            VN +++ ++++++G +IR  V+ I   SR+  G+ +    +D+ + +V  +  S+  + 
Sbjct: 788 VVNPHEEFMIITERGIIIRQSVDAITPQSRSAGGIRVQKLDEDDAIAAVALVPPSDAEES 847

Query: 906 AE 907
            +
Sbjct: 848 ED 849


>gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 864

 Score =  859 bits (2220), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/898 (43%), Positives = 539/898 (60%), Gaps = 71/898 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K +  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   EFAKEVLHVNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL D+ K+TVDF  NYDGS +EP V   R PN+L+NG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EVVD CVA+ID+P I +  LME + GPDFPT AVI G TGI  AY TGRG I +
Sbjct: 183 PPHNMREVVDACVALIDDPSIGIPQLMEHLPGPDFPTAAVINGATGIHEAYHTGRGRIYL 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E      R+ +VVTE+PYQVNKA +LEKIAELV+EK++  I++LRDESD+ G R
Sbjct: 243 RARSHVETDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG   +VILN LY++T +Q++F +NMVAL   +P    L  +L+AF+  R EVV
Sbjct: 303 MVIELKRGEVPEVILNNLYQHTQMQNVFGINMVALVDGQPRLLDLKQVLEAFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S +P  A+  LM R+W +  + +
Sbjct: 363 TRRTIYDLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDE 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++     ++                 YLS+ Q +AIL+LRL RLTGL ++ + +E   L 
Sbjct: 423 MLARAGAATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I + LDIL S  RL+ +I+ ELL ++++    RRT I+E  LD+  ED I  ED+VVT
Sbjct: 483 EKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLTLEDLITEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY K  P+S YRAQ+RGG+G+S    +DEDFV  L + STH ++L FSS G  Y  
Sbjct: 543 LSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRGKAYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP GS  ARGK ++N+L L +GERI  I+P                          
Sbjct: 603 KVYELPQGSRAARGKPIVNLLPLEEGERINAILP-------------------------- 636

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRN 720
                                    V    ++  + ++T  G   + P+    R      
Sbjct: 637 -------------------------VREYLEDLYVFMSTSSGTVKKTPLVDFSRPR---- 667

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G+  + L  GDQ++ +AI         + +       A R           +      
Sbjct: 668 SNGIIAVDLRDGDQLVDVAITD----GSRDVMLLTSAGKAIRFSEEQVRPMGRTACGVRG 723

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           V     +     + + E  +L  +E G+GKRT   DF +  R G+G+ A      N  GA
Sbjct: 724 VRLAEDQRVISLIIVDEGTVLIATENGYGKRTPPDDFPVHGRGGQGVIAIQTGGRN--GA 781

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +V    V D D+++L++D GTL+R PV +I +  R T+GV +      E +V + R+ 
Sbjct: 782 VVGATLVADEDEVMLITDGGTLVRTPVADISVLGRNTQGVRLIRLTDQEHLVELARVA 839



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 7/173 (4%)

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + ++V+S    +L    D  + +     +    R    +  E    +  + +  +  +  
Sbjct: 470 EQEKVVSEYKELLEKIDDLLDILGSPDRLMRVIRDELLEMREQFGDERRTEIIESRLDLT 529

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L  +E  ++T+S  G+ K      +R   R G+G  AT     + +  LV     + 
Sbjct: 530 LEDLITEEDVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLV---VCST 586

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRE 899
           +D I+  S +G    + V E+   SRA +G  I +     + ER+ ++  +RE
Sbjct: 587 HDTILCFSSRGKAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVRE 639


>gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
 gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A
 gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 860

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/911 (41%), Positives = 543/911 (59%), Gaps = 63/911 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    + +  + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++
Sbjct: 2   TDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA R
Sbjct: 62  PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMR 121

Query: 130 YTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+  + + LL D+  +TVDF  N+DGS QEP VL AR P +L+NG  GIAVGMAT
Sbjct: 122 YTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+I NP+I    LM+II GPDFPTGA ILGR+GI+ AY TGRGSI
Sbjct: 182 NIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQILGRSGIREAYLTGRGSI 241

Query: 249 VIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
            +RGV+ IE        DR+ I+VTE+PYQ NKAA++E+IA+LV +K+I  IAD+RDESD
Sbjct: 242 TMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESD 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VIELKR A A V+LN LY+ T +QS F  N++AL    PE  T+   L  F  F
Sbjct: 302 RDGMRIVIELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNGTPEVLTIKKFLTVFWEF 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E + RRT+Y L KA +R H+L GL IA+ NLD V+R+IR + +  +A+ EL++     
Sbjct: 362 RIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVE----- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSEVQ  AIL+++L RLT L  D I  E + L  +I
Sbjct: 417 ---------------------GFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+ R R+  II++EL  +K    TPRRT IV+   ++ D D I  +  ++ ++ 
Sbjct: 456 ADFQDILARRERVNAIIEEELEQIKAIHATPRRTVIVQEDGELIDTDLIANDQALILLTE 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P S +  Q R  +G++   ++D+D V        H  VLFFS  G VY    +
Sbjct: 516 QGYIKRMPASTFGTQNRATRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAY 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++PI S  ARG  ++ +L + + E+IT+++   E +   ++ Y +  TK G +++  LS 
Sbjct: 576 QIPIASRTARGVPIVQMLPIPKDEKITSLVSVSEFD---DDTYFIMLTKQGYIKKTALSA 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSV 722
           F  I  +G IA+ L   D++  V     E+ +++ ++ G  + F      +R   GR + 
Sbjct: 633 FSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRAL-GRATR 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ + L  GD +ISM I+                              + S        
Sbjct: 692 GVKSMRLRSGDALISMDILPSQVVANI---------------------AVGSEDEPDEDL 730

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G  ++   +E      ++L V+ KGFGKR     FR+ +R+G G++A      ++   LV
Sbjct: 731 GGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRF--KSKDDQLV 788

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---E 899
           A+  VN +D++++V+++G +IR  VN+I   SR+  GV +     D+ + +V  +    E
Sbjct: 789 ALHVVNADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALVPPSGE 848

Query: 900 SEIVDEAESTE 910
            E+ + +ES E
Sbjct: 849 EELAEMSESEE 859


>gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
 gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785]
          Length = 829

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/897 (40%), Positives = 547/897 (60%), Gaps = 86/897 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    L+++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG    +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMPADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I+                                            
Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++  
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKASD 814


>gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
 gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3]
          Length = 880

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/893 (43%), Positives = 543/893 (60%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A+I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLALINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V++     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V   + E  I + T  G   +  +     FA   + G+ 
Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I      D D  +        +           T+           
Sbjct: 672 AVNLRDDDSLIGVDITN---GDSDIMLFSKSGKVVRFNEDKVRAMGRTASGVRGMKLPED 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS+ N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSERN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  T+ DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTSDDENVVGLQRID 839



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 59/420 (14%), Positives = 150/420 (35%), Gaps = 26/420 (6%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI--KDLIDLI 434
           L++ +     +  L   +A+ + ++ +IR             +R+   + +   D+ +LI
Sbjct: 474 LDEYKALLEEIAELMHILASTERLMEVIREELEAVREIYGDERRTEITAAVHDIDMEELI 533

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 +      Y+ + Q  +  E +     G     +++E     + +    D +   
Sbjct: 534 AQEDVVVTLSNAGYV-KYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCF 592

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVTVSHLG 546
           S      + ++  +     T R   IV  L   E E             E  +   +  G
Sbjct: 593 STRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDG 652

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G V +    ++
Sbjct: 653 TVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKV 710

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 A   + +  + L + +++ +++         N   ++  T++G  +R +L+++ 
Sbjct: 711 RAMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVTQNGYGKRTELAEYP 761

Query: 667 QINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
              R+ +  + +   +     +      + +++++ T  G  VR  ++ +    GRN+ G
Sbjct: 762 TKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV-SQVGRNTQG 820

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V  I  +  + V+ +  +   +             +          E+ +   +      
Sbjct: 821 VTLIRTSDDENVVGLQRIDEVEEAEVVEGEADVANAEAPVASESSEEQASDASDGEQDTE 880


>gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
 gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039]
          Length = 858

 Score =  859 bits (2219), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/896 (39%), Positives = 556/896 (62%), Gaps = 85/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM  +G   +  Y
Sbjct: 3   DQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K   +++DDL KDTVD  PN+D +  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 123 ECRLEKIGEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DGC A IDN +I+ + LM+ I+ PDFPTG  I G  G+K+AY TGRG +V+R
Sbjct: 183 THNLSEVIDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +  ++++I++TEIPY VNK  ++E IA+LV+E ++  I++  DES RQG R+V
Sbjct: 243 AKAEIE-SDENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   TL   +K FV  R +V +R
Sbjct: 302 IDVKRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLTLKDCIKYFVEHRHDVTIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA +RAH+L G+ IA  N+DEVV+II+ S  P  AR  L QR           
Sbjct: 362 RTKFELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RL+++TGL  +++  + + L   I     IL
Sbjct: 411 ---------------FNLDELQSQAIVDMRLSQITGLKVEELHAQFDELQQRIAYLTSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +    ++K EL  +K++    RRT+I+    +   ED    + +V+TVSHLGY+KR 
Sbjct: 456 TDDNLCKKVMKDELNELKEKFGDERRTKIIPAEHEFNAEDFYPNDPVVITVSHLGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +R Q RGG G  GV  R++DF   ++  + H ++LFF+  G  Y  K + +P G+ 
Sbjct: 516 PLSEFREQARGGVGSKGVRHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +  I+     +DE   N+  VVFATK+G +++  L  + +  
Sbjct: 576 DSKGRAIQNLLNIDPDDGLNAILRLRGLDDEEFVNSHNVVFATKNGTIKKTSLEAYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ +   DE++ V     +N+I++  K G+ VRF    +R   GR + GVRG+ L
Sbjct: 636 ANGVIAINIAEGDEVVDVRLTNGKNEIIMANKNGRAVRFNEETVRAM-GRTATGVRGMKL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               DQV+ M +V  A+A                                          
Sbjct: 695 DGDDDQVVGMIVVNDAEA------------------------------------------ 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + ++ VSE G+GKR+S  D+R++NR GKG++  ++++  + G +VA+  VN
Sbjct: 713 ---------ENVMVVSETGYGKRSSVEDYRVTNRGGKGVKTLNITE--KTGRVVAIKNVN 761

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
           D++ +++++  G  IR+ V+E+R+  RAT+GV + +   K++ + SV ++  SE+ 
Sbjct: 762 DDNDLMIINKSGITIRLAVSEVRVMGRATQGVRLINLSKKNDVIASVCKVMSSELE 817


>gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537]
          Length = 851

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/902 (39%), Positives = 548/902 (60%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ERNDMRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +LI+G GNFGSVDGD PAA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMAT+
Sbjct: 123 YTEARLSKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     ++DNPD+    LM  + GPDFPTGA+++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLGEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   REQI+VTE+PY VNKA ++E+++ELVR+KRI  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A++  KP+   L  IL A++  + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGKPKTLNLKEILVAYLEHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   + A+  L++          
Sbjct: 363 RRRTAFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 413 ----------------SYSLSDKQAQAILDMRLVRLTGLERDKIEDEYRKLEALITDLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+  +R+  II  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T++  GY+
Sbjct: 457 ILAHSARVDKIIYNELLDIQQKFGDERRTELQVGDVTNIEDEDLIEEEDVIVTLTSNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + D+D +  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPTAEFKAQNRGGRGVQGMNVHDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+ +  E+I T++    D+++ +  Y+ F T+ G V+R  + DF  I
Sbjct: 577 YGRHAKGIPVVNLLNFDNDEKIQTLISV-SDQTAASESYLFFVTQLGVVKRTAVKDFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+L+V     E +I++ T  G  V F  S +RV  GR++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLNVMITNGEQNIIIATHDGYSVSFSESDVRVM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI   I+                                               
Sbjct: 695 LRDDDIVIGADILNPKAN------------------------------------------ 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++E G+GK+T++ ++ I  R GKGI+  +++  N  G+LV +  V+
Sbjct: 713 -----------VLVITENGYGKQTAATEYPIKGRGGKGIKTANITAKN--GSLVGMTIVD 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L +++G +IR   + +    RAT GV +    K+ +V ++ ++    +  E   
Sbjct: 760 GDEDIMLTTNQGVMIRFTADSVSQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTD 819

Query: 909 TE 910
           ++
Sbjct: 820 SQ 821



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 91/258 (35%), Gaps = 17/258 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  +  V+ LG VKR  +  +   R  G     + + D+D V ++ I +   +++
Sbjct: 607 QTAASESYLFFVTQLGVVKRTAVKDFSNIRTNG--LKALTLHDDDEVLNVMITNGEQNII 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G+        + +    A G   I         R+         +       V+ 
Sbjct: 665 IATHDGYSVSFSESDVRVMGRSAAGVRGI---------RLRDDDIVIGADILNPKANVLV 715

Query: 651 ATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            T++G  ++   +++              +   +   ++ +     + DI+LTT  G  +
Sbjct: 716 ITENGYGKQTAATEYPIKGRGGKGIKTANITAKNG-SLVGMTIVDGDEDIMLTTNQGVMI 774

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF   ++    GR ++GVR I L K  +V ++A V     D +      K +   +   +
Sbjct: 775 RFTADSV-SQTGRATLGVRLIRLEKETKVATLAKVDPETLDTEGTDSQAKAVDETQSEQA 833

Query: 767 GDTEEITSLKNDSSVEGN 784
            +          S+    
Sbjct: 834 SELLSRAQDDQQSTHSEE 851


>gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
 gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus
           acidilactici DSM 20284]
          Length = 843

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/892 (38%), Positives = 531/892 (59%), Gaps = 85/892 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+    IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   
Sbjct: 2   PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TGRG+I
Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G 
Sbjct: 242 ILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 302 RVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM          
Sbjct: 362 VRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM---------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS  Q +AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 412 ----------------NNYSLSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGY 547
           DIL+   R+  II  ELL ++++    RRT ++ G +   +++ ++ E+ V+ T++H GY
Sbjct: 456 DILAHTERIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S ++ Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 IKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDF 665
             S  A+G  +IN+L ++ GE I  ++         +N   Y+ F T  G  +R  +++F
Sbjct: 576 EYSRTAKGIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEF 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + I  +G  A+ L   DE+++V       +I++ T  G  + F    +R   GR++ GVR
Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L + D V+  A++                                            
Sbjct: 695 GIRLRENDYVVGSAVL-------------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ++ ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  + 
Sbjct: 711 ---------APESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GPLAGLV 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V  N+ ++L++D+G +IR  V+ +    R+T GV +  T ++ +V ++  +
Sbjct: 760 TVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 17/264 (6%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
               +      +   + D       +   +  G  KR P++ +   R  G     + ++D
Sbjct: 593 DSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG--LKAINLKD 650

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D V ++ I   H +++  +  G+    K   +      A G   I         R+   
Sbjct: 651 GDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGI---------RLREN 701

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVET 689
                         V+  T+ G  ++    ++  I   G   +K  +  E    +  + T
Sbjct: 702 DYVVGSAVLAPESKVMVITEKGYGKQTPAEEYP-IKGRGGKGIKTANITEKNGPLAGLVT 760

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                D++L T  G  +RF +  +    GR+++GV  I   +  +V +MAIV     D  
Sbjct: 761 VEGNEDVMLITDRGVMIRFNVDNV-STTGRSTLGVHVIKTDENSKVATMAIVEEEKDDES 819

Query: 750 ERICYMKHMSAQRRLISGDTEEIT 773
           E        + +    S +T+   
Sbjct: 820 EDSADTSTATHEAPSASTETQSEE 843


>gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
 gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4]
          Length = 843

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/892 (38%), Positives = 531/892 (59%), Gaps = 85/892 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+    IT V+++++M+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   
Sbjct: 2   PEDMSGRITDVNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPE 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF+ NYDG+ +EP VL +R+PN+LVNG  GIAVGM T
Sbjct: 122 RYTEARMSKITLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+     +++N D     LME + GPDFPTG +++G++GI+ AY TGRG+I
Sbjct: 182 NIPPHNLSEVIAAIHILMNNEDATTADLMEALPGPDFPTGGIVMGKSGIRKAYETGRGTI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++R    IE     RE+IV TE+PY VNKA ++E+IAEL R+KRI  I D+ DESDR G 
Sbjct: 242 ILRAKVDIETEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+++R  SA V+LN LY+ T +Q+ F  NM+A+    P+  +L  IL+ ++  +EEV
Sbjct: 302 RVVIDVRRDVSASVVLNNLYKMTLMQTTFGFNMLAIVNGAPKVLSLKQILQYYLQHQEEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA  RAH+L GL IA+ ++DE++ IIR S   E A+ +LM          
Sbjct: 362 VRRRTEFDLKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLM---------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS  Q +AIL++RL RLTGL R+ + +E   +   I +  
Sbjct: 412 ----------------NNYSLSSKQAQAILDMRLVRLTGLEREKVEDEYRKVMAAIADYR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGY 547
           DIL+   R+  II  ELL ++++    RRT ++ G +   +++ ++ E+ V+ T++H GY
Sbjct: 456 DILAHTERIHEIIYNELLEIQEKFGDERRTELMVGEVLSLEDEDLIEEEDVMVTLTHNGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P S ++ Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY+ K + +P
Sbjct: 516 IKRMPTSEFKTQNRGGRGIQGMGVHEDDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGNVRRNKLSDF 665
             S  A+G  +IN+L ++ GE I  ++         +N   Y+ F T  G  +R  +++F
Sbjct: 576 EYSRTAKGIPVINLLGIDSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEF 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           + I  +G  A+ L   DE+++V       +I++ T  G  + F    +R   GR++ GVR
Sbjct: 636 MNIRSNGLKAINLKDGDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSM-GRSATGVR 694

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L + D V+  A++                                            
Sbjct: 695 GIRLRENDYVVGSAVL-------------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ++ ++EKG+GK+T + ++ I  R GKGI+  ++++ N  G L  + 
Sbjct: 711 ---------APESKVMVITEKGYGKQTPAEEYPIKGRGGKGIKTANITEKN--GPLAGLV 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V  N+ ++L++D+G +IR  V+ +    R+T GV +  T ++ +V ++  +
Sbjct: 760 TVEGNEDVMLITDRGVMIRFNVDNVSTTGRSTLGVHVIKTDENSKVATMAIV 811



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 92/264 (34%), Gaps = 17/264 (6%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
               +      +   + D       +   +  G  KR P++ +   R  G     + ++D
Sbjct: 593 DSGESIQAVINIGRGNGDEDNEHRYLFFTTLQGVAKRTPVAEFMNIRSNG--LKAINLKD 650

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D V ++ I   H +++  +  G+    K   +      A G   I         R+   
Sbjct: 651 GDEVINVVITDGHQNIIIGTHNGYAISFKEGEVRSMGRSATGVRGI---------RLREN 701

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVET 689
                         V+  T+ G  ++    ++  I   G   +K  +  E    +  + T
Sbjct: 702 DYVVGSAVLAPESKVMVITEKGYGKQTPAEEYP-IKGRGGKGIKTANITEKNGPLAGLVT 760

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                D++L T  G  +RF +  +    GR+++GV  I   +  +V +MAIV     D  
Sbjct: 761 VEGNEDVMLITDRGVMIRFNVDNV-STTGRSTLGVHVIKTDENSKVATMAIVEEEKDDES 819

Query: 750 ERICYMKHMSAQRRLISGDTEEIT 773
           E        + +   +S +T+   
Sbjct: 820 EDSADTSTATNEAPSVSTETQSEE 843


>gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415]
 gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415]
          Length = 829

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 547/887 (61%), Gaps = 85/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+D P+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ +LM R           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEENVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV DL   STH  VLFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E   +   + F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPVVNLLKLTDGETIQTIISLNQNEI--DEKSLFFTTRQGLVKRTSISEFTNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V   T +++I++ T  G  VRF    +R   GR + GV+GI+L 
Sbjct: 634 NGLRALNLKDGDELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNM-GRGATGVKGITLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             DQV+  +++                                                 
Sbjct: 693 DADQVVGASVIR------------------------------------------------ 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++EKG+GKRT + ++    R GKGI+  +++  N  G+L  +  V+ +
Sbjct: 705 -----DDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKN--GSLAGLVTVDGH 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + I++++D G +IR  V+ I    R+T GV +    ++ ++V+   I
Sbjct: 758 EDIMIMTDTGVIIRTGVSNISQTGRSTMGVKVMRLDENAKIVTFALI 804



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 102/239 (42%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   +Q +      +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRGSQTD---AEAQAQLMSRFDLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ +    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 433 ERDKIQNEYNDLLALIADLADILAKPERVVTIIKDEMDEIKRKYADPRRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEENVLITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDDFVRDLVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            +D ++  +++G + R+   EI    R  KG   V +      E + ++  + ++EI +
Sbjct: 550 THDVVLFFTNQGRVYRLKGYEIPEYGRTAKGLPVVNLLKLTDGETIQTIISLNQNEIDE 608



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 89/255 (34%), Gaps = 17/255 (6%)

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           + T        +      + E  +   +  G VKR  +S +   R+ G     + ++D D
Sbjct: 588 KLTDGETIQTIISLNQNEIDEKSLFFTTRQGLVKRTSISEFTNIRQNG--LRALNLKDGD 645

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            + ++ + +    ++  +  G+  + K   +      A G   I +   +Q         
Sbjct: 646 ELINVLLTTGQDEIIIGTHFGYSVRFKEEVVRNMGRGATGVKGITLRDADQ--------- 696

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCT 691
                   ++  V+  T+ G  +R   S++              +   +      V    
Sbjct: 697 VVGASVIRDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGSLAGLVTV-D 755

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
              DI++ T  G  +R  +S I    GR+++GV+ + L +  ++++ A++       +E 
Sbjct: 756 GHEDIMIMTDTGVIIRTGVSNI-SQTGRSTMGVKVMRLDENAKIVTFALIEPEPEADEEA 814

Query: 752 ICYMKHMSAQRRLIS 766
               +         +
Sbjct: 815 EANEEEKGQGVNEEN 829


>gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 848

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/897 (39%), Positives = 538/897 (59%), Gaps = 84/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   ELNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG++ 
Sbjct: 183 IPTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVMGKSGIRRAYETGRGTVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +EQIVVTE+PY VNKA ++E+I+EL R+K+I  I  +RDESDR+G R
Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A++   P+  +L  IL A++A + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHGAPKTMSLKEILVAYLAHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 412 ---------------NGYALSDKQAQAILDMRLVRLTGLERDKIEEEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T+++ GY+
Sbjct: 457 ILAHEERVDEIIYNELLEIQTKFGDKRRTELQVGDVLSIEDEDLIEEEDVIVTLTNSGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV    ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVATGEFKAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I T++    +    N+ Y+ F T+ G V+R  + +F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEGNEKIQTVINVRGEAGESND-YLFFVTRLGVVKRTAVKEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+      +I++ T  G  V F  + +RV  GR++ GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQNIIIATHNGYSVSFAENDVRVM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+   ++                                               
Sbjct: 695 LREGDLVVGSDVL----------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+  +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+
Sbjct: 708 ------EKDHNVLIITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GPLAGMTIVS 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
             + I++ + +G +IR  V+ +    RAT GV +     + +V ++ ++   E++++
Sbjct: 760 GQEDIMVTTTQGVMIRFNVDSVSQTGRATLGVRLIRLEGNAKVATLAKVEHEEVLED 816


>gi|226303499|ref|YP_002763457.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
 gi|226182614|dbj|BAH30718.1| DNA gyrase subunit A [Rhodococcus erythropolis PR4]
          Length = 843

 Score =  859 bits (2218), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/917 (38%), Positives = 522/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  +   I  V I  EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N     +  L A+ME I+GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +   + EV+VRRT+YLL KA++RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLME--------------------------LLDVDEIQADAILGMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSADDDLLLVSAQGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+ KRT   D+ +  R GKG+      
Sbjct: 723 -------------------------FLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K  + G LV    V+D+D++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 K--KRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRESEIVDEAESTE 910
           + R  +      AE+T+
Sbjct: 816 IARNADEPEELAAETTD 832


>gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
 gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2]
          Length = 825

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/890 (40%), Positives = 538/890 (60%), Gaps = 85/890 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K 
Sbjct: 3   EAKQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RY
Sbjct: 63  HKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +L D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 123 TEARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     +++NP++  + LME++ GPDFPTG +++G++GI+ AY TG+GSI +
Sbjct: 183 PPHNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSITV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG   + +    +E+I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+
Sbjct: 243 RGKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI+++R  SA VILN LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV 
Sbjct: 303 VIDVRRDVSASVILNNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++  NKA  RAH+L GL IA+ ++DE++ +IR S + + A+  +M+R          
Sbjct: 363 RRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AIL++RL RLTGL RD I NE  SL   I +  DI
Sbjct: 413 ----------------FSLSDRQAQAILDMRLRRLTGLERDKIENEYQSLLELIADLKDI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L++  R+L II+ EL  +       RRT ++   +L +EDED I  E++V+T+++ GY+K
Sbjct: 457 LANPQRVLEIIQTELQELGQRFGDERRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV  S +RAQRRGG+G  G+ + DEDFV  L   STH ++LFF+++G VYK K + +P  
Sbjct: 517 RVANSEFRAQRRGGRGVQGMGIHDEDFVKTLISCSTHDTLLFFTNMGKVYKAKGYEIPEY 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L ++  ERI  I+            Y+ F T+ G V+R  ++ F  I 
Sbjct: 577 GRAAKGIPVINLLGIDSNERIEAIIS--ASGGPQEGRYLFFTTRLGIVKRTSVTAFSNIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE+++V     ++ +++ T  G  V F    +R   GR + GVRGI L
Sbjct: 635 ANGLIAIGLRENDELVNVVETNGQDVMIIGTHNGYSVTFKEELVRDM-GRTAAGVRGIRL 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+  +++                                                
Sbjct: 694 REDDYVVGASVIK----------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 ++  +L ++E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+ 
Sbjct: 707 ------EDSEVLVITENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + I+L++DKG +IR  V  +    RAT GV +       +VV++  +  
Sbjct: 759 KEDIMLITDKGVIIRFNVETVSQTGRATLGVRLMKMENGAKVVTMATVDP 808


>gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/894 (41%), Positives = 549/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 98/241 (40%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +     +  +     + +  +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    +DE + +V    ES+  D+
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
 gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231]
          Length = 852

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/907 (42%), Positives = 534/907 (58%), Gaps = 72/907 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K
Sbjct: 6   KEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+AA+YD + RMAQ +++R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + AH LL DL K+TVDF  NYDGS QEP VL  R PN LVNGG GIAVGMATN+P H
Sbjct: 126 RMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D C+A+ID+  + +D LM  + GPD PT A+I G  GI+ AY TGRG +VIR  
Sbjct: 186 NLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAIINGVAGIREAYRTGRGRMVIRAR 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              E+     +  ++VTE+PYQVNKA +LEKIA LV+EKRI  I +LRDESD+ G RVVI
Sbjct: 246 CEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+RG   +V+LN LY++T L+S+  +NMVAL   +P+  +L  +L AF+  R EVV RR
Sbjct: 306 ELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQPKLHSLRDVLDAFLRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD-IKDLI 431
           T Y L KAR+R HVL GLA+A+AN+DEV+ +I+ SP P  A+  L+ RSW     I +++
Sbjct: 366 TVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGITEML 425

Query: 432 DLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL+LRL RLTGL ++ I  E   L   
Sbjct: 426 QRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRDLLGS 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++ELL++K+    PRRT I    +D+  ED I  ED+VVT+S
Sbjct: 486 INELLAILGSGDRLMAVIREELLAIKEHYADPRRTEITANRVDLTLEDLIQPEDVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQ RGGKG++   M+DEDF+  LF+ +TH ++L FSS G  Y  KV
Sbjct: 546 HGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLCFSSHGKCYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP GS  +RGK ++N+L L+  ERI+ ++                      ++     
Sbjct: 606 YELPHGSRGSRGKPIVNLLPLDPAERISAVVS---------------------IKEFDDQ 644

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSV 722
            F                              + + T+ G   + P+S   R      S 
Sbjct: 645 HF------------------------------VFMATRKGTVKKTPLSDFSRPR----SS 670

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G+  ++L + D ++++ I         E +       A R           +      ++
Sbjct: 671 GIIAVNLQEDDWLVNVGITD----GEREIMLLTDAGKAIRFPEDAVRPMGRTAGGVRGIQ 726

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +   Q L L E  ILT +E G+GKRT   ++   +R G+G+ +   S+ N  G +V
Sbjct: 727 LGTGQSVIQLLILGEGDILTATENGYGKRTPVAEYPRRSRGGRGVISIQTSERN--GNVV 784

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V + D+I+L+++ GTL+R+PV EI I SR T+GV + +   +ER+  V RI     
Sbjct: 785 GAAQVTEEDEIMLITNAGTLVRIPVAEISIVSRNTQGVKLIALGGEERLAGVARIEPLND 844

Query: 903 VDEAEST 909
             E E  
Sbjct: 845 TVEDEDA 851


>gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 842

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/910 (40%), Positives = 539/910 (59%), Gaps = 79/910 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD E    I S  +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  
Sbjct: 2   SDNESTARIISTDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVD DPPAA
Sbjct: 62  DRPFRKCARVVGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAA 121

Query: 128 ERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   A   LL D+  +TVDF  NYDGS QEP+VL AR P +L+NG  GIAVGM
Sbjct: 122 MRYTECRLTAFAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIP HNL E+VDG +A+I NP++    LM+ I  PDFPTGA+I+G+ GI+ AY TGR 
Sbjct: 182 ATNIPPHNLSELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIMGQEGIREAYTTGRS 241

Query: 247 SIVIRGVSHIEKTSGD----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           SI +RGV+ +E         R+ I++TE+PYQ NKAAM+EKIAELV EK++  IAD+RDE
Sbjct: 242 SITLRGVARVETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RVVIELKR A   V+LN LY+ T LQ+ F VNM+A+   +P   TL   L+AF+
Sbjct: 302 SDRSGMRVVIELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGEPRTLTLRDALQAFL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FREEV+ RRT+Y L KA +R H+L G  +A+  LD V+ +IR + +  TAR EL     
Sbjct: 362 DFREEVIERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREEL----- 416

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + LSE Q   IL+++L RLT L  + I+ E   L  
Sbjct: 417 ---------------------QAVLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVR 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +  DIL+ R R++ II +EL  +K    +PRR+R+     ++  +D I   + V+ +
Sbjct: 456 QIADLRDILARRERVMQIISEELQQLKARFASPRRSRLCLEDGELGTDDLIENRETVIFL 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY+KR+ L  ++ Q R  +G++G  ++++D +   F   +H ++LFF++ G VY   
Sbjct: 516 TEQGYIKRMGLEEFQVQGRATRGKAGARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLP 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++P GS  ARG A++ +L + + ER+T+++P  +     ++ Y+V  T+ G +++  L
Sbjct: 576 AHQIPQGSRAARGSAIVQLLPITREERVTSMVPVSQFS---DDEYLVMLTRGGYIKKTAL 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           S F  +  +G IA+ L+  DE+  V      +D+++ T+ G  +RFP     +R   GR 
Sbjct: 633 SAFANVRSNGLIAISLEENDELRWVRRARSSDDVVMATRQGMSIRFPADDEQLRPL-GRA 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVR I+L  GD ++SM I+        ER                             
Sbjct: 692 TRGVRAITLNAGDDIVSMDIISAESVMAAER----------------------------- 722

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                     +  KL   ++L ++++G GKR++  +FR  NR GKG+ AT          
Sbjct: 723 ----------EGEKLANPWVLVITKEGRGKRSAIDNFRQQNRGGKGVIATKF--RQASDE 770

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L A+  VN  D+I+LV+ +G ++R     I   SR   GV++     ++ +V V  +  +
Sbjct: 771 LAALRIVNAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPAA 830

Query: 901 EIVDEAESTE 910
            + +E E++E
Sbjct: 831 LVAEE-ETSE 839


>gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM
           17244]
          Length = 822

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/901 (40%), Positives = 555/901 (61%), Gaps = 90/901 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      ++    I    I +EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MAKK--EEIQDIHGRIEDRDIVEEMQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ + ++K Y K ARI G+ MGKYHPHG+++IYDA+ R+AQD+S R  L++G GNFGS+
Sbjct: 59  SELNLSYDKPYRKSARIVGDTMGKYHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K    +L D+ K+TVD+ PN+D + +EPVVL +R+PN+LVNG  
Sbjct: 119 DGDSQAAMRYTEAKMTKMTGEMLRDISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD  +A+I+NP+I+++ L++ ++GPDFPTG +I+G+TGI NA
Sbjct: 179 GIAVGMATNIPPHNLREVVDAIIALIENPNIEINDLIKYVKGPDFPTGGIIMGKTGIYNA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIE+ S  R++IVVTEIPY VNKA M+EKIA+LVR+K++V I+D+R
Sbjct: 239 YTTGRGRIKLRSKTHIEEISKKRQRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RV I+L++  +A +ILNQLY+YT LQ  FSV  +AL   +P+   L  IL  
Sbjct: 299 DESDRNGIRVAIDLRKDVNASIILNQLYKYTQLQDTFSVINLALVDNQPKVLNLKEILVH 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +++++VRRT+Y L KA+ RAH++ GL IA+ N+DE+++IIR S N   A  +LM+R
Sbjct: 359 YLNHQKDIIVRRTEYDLKKAKARAHIVEGLLIALDNIDEIIKIIRASYN--DAEEKLMER 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSEVQ +AI+++RL RL GL R+ + NE   L
Sbjct: 417 --------------------------FDLSEVQAKAIVDMRLRRLQGLEREKLENEYAEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    +L+S   ++ IIK+EL  +KD+    RRT       D + ED I  ED+VV
Sbjct: 451 LKTIEYLESVLASDELVMSIIKEELSEIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H+GYVKR+P S Y+ Q+RGGKG + +  R+ DFV  LF  +TH  ++FF++ G VY+
Sbjct: 511 TITHVGYVKRLPASTYKTQKRGGKGVTALSTRENDFVKHLFFTTTHHYIMFFTNKGKVYR 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  A+G A++N+L+L+ GE+IT ++P  E +   ++ Y+V AT++G  ++ 
Sbjct: 571 LKGYEIPDASRIAKGTAIVNLLALDPGEKITAVIPIKEFK---DDEYLVMATRNGVFKKT 627

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+++    ++G +A+ L   DE++ V       +I+L T  G  ++F  + +R   GR 
Sbjct: 628 SLTEYDSSRKNGIVAINLAEDDELIGVSLTDGNQNIILGTHKGLAIKFNEADVRAI-GRV 686

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV+GISL   D +I M I                                        
Sbjct: 687 SKGVKGISLKDDDYLIGMDIATD------------------------------------- 709

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++L+V+EKG+GK T +  +    R+GKG+    ++K  + GA
Sbjct: 710 ----------------NAYVLSVTEKGYGKITKTNLYPTQGRAGKGVLNYKLTK--KTGA 751

Query: 841 LVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           L  +  +  + D I+++S  GT+IR+  + I    R+T GV + +  +D  + ++ ++  
Sbjct: 752 LSGMCVIEKEKDDIMVISIDGTVIRIDTSGISQMGRSTSGVKVMTLDEDVNISTIAKVPS 811

Query: 900 S 900
            
Sbjct: 812 Q 812



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 106/260 (40%), Gaps = 26/260 (10%)

Query: 657 VRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           VRR +     +      I     + LD+ DEI+ +   +  +      +     RF +S 
Sbjct: 368 VRRTEYD-LKKAKARAHIVEGLLIALDNIDEIIKIIRASYND-----AEEKLMERFDLSE 421

Query: 713 IRV-----FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           ++         R   G+    L + +     A +L      +  +   + + +  +    
Sbjct: 422 VQAKAIVDMRLRRLQGLEREKL-ENEY----AELLKTIEYLESVLASDELVMSIIKEELS 476

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           + ++    +  ++ E +  +   ++L  +E  ++T++  G+ KR  +  ++   R GKG+
Sbjct: 477 EIKDKYGDERRTAFEVDDEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGV 536

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
            A    + + +  L   F    +  I+  ++KG + R+   EI  ASR  KG   V + +
Sbjct: 537 TALSTRENDFVKHL---FFTTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLA 593

Query: 885 TAKDERVVSVERIRESEIVD 904
               E++ +V  I+E +  +
Sbjct: 594 LDPGEKITAVIPIKEFKDDE 613


>gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031]
 gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031]
 gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104]
          Length = 822

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/894 (41%), Positives = 549/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSI +R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIALR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D++ S    +L   AD  + +   + +S   +    + +   S K  + +        
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSL 492

Query: 790 CQELKLKEQFIL-TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             E  ++E  +L T+S +G+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    +DE + +V    ES+  D+
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 949

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/900 (42%), Positives = 550/900 (61%), Gaps = 93/900 (10%)

Query: 6   ISSDEEEEKGITS-------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
            +SD+ E+KGI         + I +EM+ SY+ YA++VI+GRA+PD RDG KPVHRR+LF
Sbjct: 56  PASDDPEDKGIEPGQSGVTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLF 115

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G+  +K Y K AR+ G+V+GKYHPHG+ A+YD + RM QD+SLR  LI+GQGNFG
Sbjct: 116 AMKEAGITHDKPYKKSARVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFG 175

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA RYTE R+ + A  +L D+ K+TV F PNYDGS +EP VL A+ PN+LVNG
Sbjct: 176 SIDGDSAAAMRYTEVRMDRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNG 235

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATN+  HN+GEV+DG + +I+NPDI +  LM +I+GPDFPTGA ILG  GIK
Sbjct: 236 STGIAVGMATNMAPHNIGEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGTAGIK 295

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG++ IR V+ I++   DR++I+VTE+PYQVNKA M+E IA+LVREK I+ I+D
Sbjct: 296 SAYMTGRGALKIRAVAEIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISD 355

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR+G RVVIEL RG +  V+LNQLY++T +++ F V  +AL   KP+   L  +L
Sbjct: 356 LRDESDREGIRVVIELSRGTNPKVVLNQLYKHTQMETTFGVINLALVDGKPKELNLKELL 415

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ +R E++ +RT Y L K+ +RAH+L GL IA+ N+DEVV +I+ S N + A++ LM
Sbjct: 416 EIYLEYRMEIIQKRTLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLM 475

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             L E+Q++AIL++RL RLTGL    +  EL 
Sbjct: 476 E--------------------------NFALDEIQSKAILDMRLQRLTGLETKKVLEELE 509

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I E   I+ S      II+ ELL +K++    RRT+I++   ++ +ED I  E++
Sbjct: 510 GLVKLIGELNKIIESDELKYEIIRNELLELKEKYGDARRTKIMQAASEVREEDLIHEEEV 569

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+++ GY+KR+PL  Y  Q RGG+G  G+ M++EDFV +LFI STH  +LFF++LG +
Sbjct: 570 VVTITNGGYIKRIPLKTYTMQHRGGRGIIGMEMKEEDFVENLFISSTHNYILFFTNLGRL 629

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y EKV+ +P GS Q+RGKA++N+L L  GE I  ++P  E +    N Y++ AT+ G ++
Sbjct: 630 YWEKVYEIPEGSRQSRGKAIVNLLELKGGETINAMIPVKEFD---KNHYLLMATREGTIK 686

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  LS+F    ++G IA+ LD  DE++ V     + ++L+ +K G+ +RF    +R   G
Sbjct: 687 KTPLSEFKNPRKAGIIAVTLDEDDELVRVLLTDGKKEVLIVSKKGKAIRFSEKDVRPM-G 745

Query: 719 RNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++L    D+V+S+ IV                                    
Sbjct: 746 RTARGVRGMALDGPEDEVVSLDIVDETTTLLTVTE------------------------- 780

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                        GFGKRT    +    R GKG+     ++ N 
Sbjct: 781 ----------------------------NGFGKRTEYSQYPAHRRGGKGVITIITNERN- 811

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +  V  V D+D++I  S  G +IR+P  +I I  R T+GV I +    ++V  + RI
Sbjct: 812 -GPVSRVRSVADDDELIFTSADGIIIRIPAKDISIQGRNTQGVRIINLKSGDKVAGIARI 870



 Score = 81.8 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 14/249 (5%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +K+ PLS ++  R+ G     +   ++D +  + +      VL  S  G   +  
Sbjct: 680 TREGTIKKTPLSEFKNPRKAGIIAVTLD--EDDELVRVLLTDGKKEVLIVSKKGKAIRFS 737

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      ARG   +  ++L+  E     +   ++ ++   +      ++G  +R + 
Sbjct: 738 EKDVRPMGRTARG---VRGMALDGPEDEVVSLDIVDETTTLLTVT-----ENGFGKRTEY 789

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAGR 719
           S +    R GK  + + + +    V        +++++ T+  G  +R P   I    GR
Sbjct: 790 SQYPAHRRGGKGVITIITNERNGPVSRVRSVADDDELIFTSADGIIIRIPAKDI-SIQGR 848

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GVR I+L  GD+V  +A + +  A+ + ++   K   A     +G+  E+   + + 
Sbjct: 849 NTQGVRIINLKSGDKVAGIARIQNGKAEKNLKLTAFKGKEATEATGAGEEAEVPEGEAED 908

Query: 780 SVEGNISEE 788
             E +  E+
Sbjct: 909 LNEFDEVED 917


>gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 822

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 551/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5]
          Length = 851

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/895 (37%), Positives = 534/895 (59%), Gaps = 83/895 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYVK 73
            I  ++I ++M+++Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M  ++ +  +K   K
Sbjct: 14  RIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELNLYSDKPTRK 73

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GK+HPHG+ ++YDA+ R+AQDWS+R  L++GQGNFGS+DGD PAA RYTE 
Sbjct: 74  SARIVGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDSPAAMRYTEA 133

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    ++ D+ K+TVD+  N+D +  EP VL  + P ++VNG  GIAVGMATN+  H
Sbjct: 134 RMKKITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAVGMATNMAPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C A IDNP+I  + +++ I+GPDFPTG +I G  G++ A  TGRG +++R  
Sbjct: 194 NLSEVVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIYGYEGVREAMLTGRGRVMMRAK 253

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE T   RE IV+TEIPY +NKA M++KIA+++ EK+I  I+ + DESDR G R++I 
Sbjct: 254 TDIEHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDESDRNGLRIIII 313

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK  A A V+LN L++ T LQ+ F+VN +AL   +P+   +  ++K FV  R +VVVRR 
Sbjct: 314 LKHDAVASVVLNTLFKNTPLQTSFAVNNIALVNGRPQMLPMRDLVKHFVDHRHDVVVRRA 373

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA +R H++ GL IA  N+DE+V IIR S  P+ A++ +++R             
Sbjct: 374 RFDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIER------------- 420

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS++Q  AI+E+RL  LTGL    +  E + L  +I    ++L +
Sbjct: 421 -------------FNLSDIQASAIIEMRLRALTGLEYGKLIAERDELTKQIAYLKEVLEN 467

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
               + IIK ELL +K++    RR+ IV    +   ED    +DMV+T+SH+GY+KR PL
Sbjct: 468 VGMQMQIIKDELLEIKEKYGDERRSEIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPL 527

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR Q RGG G  G   RDEDF+  +++ S H ++LFF+  G  +  KV+ +P G+  +
Sbjct: 528 AEYRTQNRGGVGAKGSATRDEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSS 587

Query: 614 RGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+A+ N++ +   +++   +      DE   NN +++  TK G +++ KL  + +  ++
Sbjct: 588 KGRAIQNVIQIEPDDKVRAYINVKRLNDEEYVNNNFIIMCTKDGTIKKTKLEAYSRPRQN 647

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   D+++  +  + + ++++  + G+ +RF  S +R   GR   GVRGIS+ +
Sbjct: 648 GVNAIVIREGDQLIEAKLTSGQAEVMIAARDGKAIRFNESTVRPI-GRVGAGVRGISIEE 706

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V                                                  
Sbjct: 707 SDEVVGMICVEP------------------------------------------------ 718

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                +Q +L +SE G+GKRT   ++RI+NR GKG++  +V++  + G L+++  V D++
Sbjct: 719 ---DSKQDVLVLSENGYGKRTDLDEYRITNRGGKGVKTINVTE--KTGKLISIQAVTDDN 773

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +++++  G  IR  V++IR+A RAT+GV I +  + + + SV  +  +   DE 
Sbjct: 774 DLMIINRSGLTIRTAVSQIRLAGRATQGVRIINLREGDAIASVMAVPAAGDEDEE 828


>gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
 gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2]
          Length = 837

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/887 (42%), Positives = 547/887 (61%), Gaps = 87/887 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ +  V I+ EM+ S+L Y+++VI+ RA+PD+RDG+KPVHRRIL  M ++G+  +K +
Sbjct: 4   NKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  ++ D+ KDTVDF PNYD    EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL E +D   A++DNP+I +  LM   I+GPDFPTG +ILGR GI+ A+ TGRGSI++
Sbjct: 184 PHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIILGRAGIRQAFETGRGSIMV 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+E     + +IVVTEIPYQVNKA ++ KIA+LVREK+I  I  L DES+R+G R+
Sbjct: 244 RSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGIRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++ A  DVILNQLYR T LQ+ F VNM+AL    P++  +   L+ +V  + +V V
Sbjct: 304 VIELRKDAQPDVILNQLYRMTQLQTSFGVNMLALVEKTPKQMGIREALQHYVNHQIDVTV 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA DRAH+L GL IA+ ++DE++ +IR S N   AR  LM++          
Sbjct: 364 RRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQ---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AILE+RL RLTGL RD I NE   L   I +  DI
Sbjct: 414 ----------------FKLTEIQANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R+LGII+ EL  VK+     RRT I E   DM+DED I  ED+V+T++  GY+KR
Sbjct: 458 LANHDRVLGIIRDELTEVKNRFGDERRTEISEADYDMQDEDLIPVEDVVITMTTNGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   YR Q RGG+G  G+ + ++D V  L  +STH  ++ F++LG VY+ K +++P   
Sbjct: 518 MPTDTYRTQNRGGRGVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSG 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L+L++ E++  ++P   D     + +++F TK+G V+R  +S+F  I +
Sbjct: 578 RTAKGLPVVNLLNLDKEEKVRALVPVRPDS---ESSFLLFVTKNGLVKRTPMSEFDSIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   DE++ V+  T +++I++    G+ VRF    IR   GR + GV+G ++ 
Sbjct: 635 NGKIAITLREFDELVGVKETTGDDEIIIAGSNGKAVRFHEDDIRAM-GRTASGVKGFNV- 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G  V+  A                                                   
Sbjct: 693 DGSIVVGAA--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                +   +L VSE G+GKRT+  ++R++ R  KG++  +V+  N+ G LV+V  VN +
Sbjct: 702 --TSKEGTHLLAVSENGYGKRTAIEEYRLTTRGAKGVKTINVT--NKTGELVSVRAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  ++V++ G +IR+ V++I I SR T+GV + + A +E V  V  +
Sbjct: 758 EDAMIVTNSGIIIRISVDDIGIYSRNTQGVKLINVADEESVAKVAIV 804


>gi|229491128|ref|ZP_04384956.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
 gi|229321866|gb|EEN87659.1| DNA gyrase, A subunit [Rhodococcus erythropolis SK121]
          Length = 843

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/917 (38%), Positives = 522/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D  +   I  V I  EMQNSY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDGPQHDRIEPVDIQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGKTQEPTVLPSRIPNLLINGSN 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N     +  L A+ME I+GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENFEADEEATLAAVMERIKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIGGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRVGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +   + EV+VRRT+YLL KA++RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYTTHQLEVIVRRTRYLLRKAQERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLME--------------------------LLDVDEIQADAILGMQLRRLAALERQKIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIELEIADLEDILARPERQRAIVRDELKEIVDKYGDDRRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVTSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEDDLLLVSAQGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+ KRT   D+ +  R GKG+      
Sbjct: 723 -------------------------FLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K  + G LV    V+D+D++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 K--KRGTLVGALIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRESEIVDEAESTE 910
           + R  +      AE+T+
Sbjct: 816 IARNADEPEELAAETTD 832


>gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
 gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855]
          Length = 910

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/928 (38%), Positives = 549/928 (59%), Gaps = 80/928 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++  +  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+    
Sbjct: 2   EADDSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++YD L RMAQ +S+R  L +GQGNFGSVDGD  AA R
Sbjct: 62  NYKKSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+GK+TVD + N+DG+ +EP VL A +PN+LVNG  GIAVGMAT 
Sbjct: 122 YTEARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATK 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  VA ID+PDI++D LM+ +  PDFPTG +I G  G+  AY TGRG +V
Sbjct: 182 IPPHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIYGYAGVYEAYHTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ +VVTE+PYQVNK+  +E+IA+ VR++RI  IADLRDESDR G R
Sbjct: 242 MRAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA+A+++ NQ+Y+++ LQ  F VNMVAL G +P+  TL   ++ +V  R E+V
Sbjct: 302 IVIELKQGANAEIVKNQVYKHSRLQDTFGVNMVALVGGRPQVVTLKDAIRHYVDHRHEIV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L +A+DRAH+L GL +A+ +LD V+ IIR SP+  TAR+ L    +  +   D
Sbjct: 362 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 421

Query: 430 LIDLIDDSSYTIGS-----------------------DGTMYLSEVQTRAILELRLARLT 466
            +  I+      G                        D   +L+E Q  AIL LRL+RLT
Sbjct: 422 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 481

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-L 525
           GL R+ I  E   +  +I+E   IL+SR R + +IK+ELL+VK+  D  RRT I      
Sbjct: 482 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGD 541

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I R+ +VVT+++ G  KR P+  YR Q RGG G  G   R++DF+  L++  +
Sbjct: 542 DIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHS 601

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDES 641
           H  +L F+  G  +  + + +P G   A+G+++  ++ ++  +R+  ++       EDE+
Sbjct: 602 HDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEA 661

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             N+ YV+ AT+ G V++  L  + +   +G I +K+D  D+++       +N +++ + 
Sbjct: 662 FLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGGDNTVVVASS 721

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ V F     R   GRN+ GVRG+ L    +++ M  V  A  D              
Sbjct: 722 GGRAVHFDEGDARPM-GRNTRGVRGMELPGDQELVGMISVPPAMHD-------------- 766

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                              +  +L ++E G+GKRT+  D+R+  
Sbjct: 767 -----------------------------------DLDVLAIAEHGYGKRTALSDYRVQG 791

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R GKG+   + +     GALV++  V  ++ ++++++ G +IR  V EI    R T+GV 
Sbjct: 792 RGGKGLITLNRTDR--TGALVSIKGVLGDEDLMVITEGGIMIRTRVGEISTMGRNTQGVQ 849

Query: 882 IFSTAKDERVVSVERIRESEIVDEAEST 909
           +      + +  V R+ +++  +  + T
Sbjct: 850 VIDLKDGDAIADVTRVADTDEPEADDGT 877



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 11/275 (4%)

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              R   ++    +  +++  +    V+  +  G VK+  L  Y   R  G     +   
Sbjct: 642 PDDRVRAVISVSKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEG 701

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+     L   +   + +  +S G   +   +      P  R    +  + L   + +  
Sbjct: 702 DQLIEASL---TGGDNTVVVASSGG--RAVHFDEGDARPMGRNTRGVRGMELPGDQELVG 756

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVET 689
           ++  P   +  ++L V+   +HG  +R  LSD+    R GK  + L+  D     +S++ 
Sbjct: 757 MISVP--PAMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKG 814

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
              + D+++ T+ G  +R  +  I    GRN+ GV+ I L  GD +  +  V   D    
Sbjct: 815 VLGDEDLMVITEGGIMIRTRVGEISTM-GRNTQGVQVIDLKDGDAIADVTRVADTDEPEA 873

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +               + + E      +D+  + +
Sbjct: 874 DDGTADDEAPDADAAAAANGEMDDDAASDAVEDTS 908


>gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8]
 gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus]
 gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8]
          Length = 805

 Score =  858 bits (2217), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/887 (42%), Positives = 534/887 (60%), Gaps = 86/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK 
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMGKYHPHG+AAIYDAL RMAQ W+LR  LI+GQGNFGS+DGDPPAA+RYTE R
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      +L D+ KDTVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HN
Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  VA+I+NP I L+ +M  + GPDFPTG  +  + GIK AYATGRGS+ +R   
Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKLS-KKGIKEAYATGRGSLKVRAKV 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+  G R  +VVTEIPYQVNKA+++ +IA LV+ K+I DI  LRDESDRQG R+ IEL
Sbjct: 242 RVEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+  V+LNQLY++T+LQ+ F+VN++A+   +P+  +L+ +++ ++  R+EVV RR+ 
Sbjct: 301 KRGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSL 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR  LM+R              
Sbjct: 361 FELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   
Sbjct: 407 ------------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +RLL  +K +LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL 
Sbjct: 455 ARLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLE 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ RGGKG      ++ED  T +F+   H  +L F++ G VY+ KV+ LP    QAR
Sbjct: 515 SYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + ++L L + E +  ++     +      Y+VFAT+ G V+R  L ++  + ++G I
Sbjct: 575 GVHVKSLLPLAEDEEVAALLSVRGLD---QEGYLVFATERGLVKRTALKEYQNLGQAGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733
           A++L   D ++ V     E++ +L T+ GQ +RFP+  +R   GR++ GV G+   K  D
Sbjct: 632 AIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKKPED 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ +V   +                                                
Sbjct: 691 RVVSLVVVKPGEMVD--------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L+VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   + +
Sbjct: 706 ------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVST--KVGRLAALLKVRGGEDL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++S +G  IR PV EIR  SRAT GV + +  +D+ V S   + E 
Sbjct: 758 LVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEE 804



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 52/212 (24%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           + +        +    +  L S   +        +       E     +      +L  +
Sbjct: 494 EDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFT 553

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV----------------- 847
            +G   R   Y+     R  +G+    +  + E   + A+  V                 
Sbjct: 554 NRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSVRGLDQEGYLVFATERGL 613

Query: 848 ----------------------------------NDNDQIILVSDKGTLIRVPVNEIRIA 873
                                             +  D+ IL + +G  IR P+ E+R  
Sbjct: 614 VKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRAT 673

Query: 874 SRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            R T+GV+     K ++RVVS+  ++  E+VD
Sbjct: 674 GRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVD 705


>gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
 gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096]
          Length = 828

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 554/900 (61%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  D L
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIQDN---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RESEIVDEAEST 909
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   +  E   +DE  + 
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSIDEINTD 817


>gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS]
 gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
 gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A
 gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes]
 gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS]
 gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005]
          Length = 828

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIQDN---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G+RA  + +      L+ V   +  D II+ +  G  +R     
Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R+  GV      +D+RVV   RI++++ V
Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + +   ++                 +N  V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIQDNQEVLVITENGFGKRTSA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +D+              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           R ++GV+ + L    ++++  +V   D+   E     ++  ++ +
Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826


>gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
 gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 871

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/894 (38%), Positives = 540/894 (60%), Gaps = 85/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +G+     + K
Sbjct: 5   EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K +  ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG  GIAVGMATN+P H
Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++G +A ++N DI++D LM+ I+ PDFPTG +I G  G++ A+ TGRG IV+R  
Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVMRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+    RE I+V+EIPYQVNKA M+++ A+LV EK+I  I+++RDESDR G R+V  
Sbjct: 245 VGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVYI 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A+ +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  FV  R +VVVRRT
Sbjct: 304 LKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIHYFVEHRHDVVVRRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L KA +RAH+L GL IA  N+DEV+ +IR S N + A+ +L++R             
Sbjct: 364 KFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIER------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS++Q+RAI+E+RL +LTGL +D +R E   L   I+    +L+ 
Sbjct: 411 -------------FKLSDIQSRAIVEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLAD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +    +IK+EL  ++ +    RR++I     D+  ED I  E++V+T+SH GY+KR  L
Sbjct: 458 VNLRTALIKEELEDMRAKYGDERRSQIEYSGGDVSIEDLIADENVVITISHAGYIKRTNL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y+ Q RGG G+     RD DF+  +++ + H  ++FF+  G  Y  +V+ +P GS  A
Sbjct: 518 NEYKTQNRGGVGQKSAGTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEGSKTA 577

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+AL N++++   +++   +   +  D+    +  ++  TK G V++  L  + +   +
Sbjct: 578 KGRALQNLINIESDDKVKAFICTQDLKDKDYTTSHNLIMVTKKGMVKKTSLDKYSKPRVN 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   DE+LS +     + I++  K G+ +RF  +  R   GR + GVRGI L  
Sbjct: 638 GVAAITIKEGDELLSAQLTDGNSQIIIAVKSGKLLRFEETKTRPM-GRTASGVRGIRLKD 696

Query: 732 G-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+VI +  V   +++                                           
Sbjct: 697 ESDEVIGLVSVNDMNSE------------------------------------------- 713

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    IL V+E G+GKR+S  ++RI+NR GKG++  ++++  + G L+++  V D 
Sbjct: 714 ---------ILVVAENGYGKRSSLDEYRITNRGGKGVKTLNITE--KTGQLISINTVTDA 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++ + ++ +
Sbjct: 763 DDLMIINKSGLTIRMAVEDLRVMGRATQGVKLINLKGKDSIAAVTKVMKDDVEE 816


>gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 829

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/897 (40%), Positives = 546/897 (60%), Gaps = 86/897 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ ++  I +V +T  M+ S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K+Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++DNPD+    LM++I GPDFPTG +++GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +I++R  + IE     RE+IVVTE+PY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNGAPHFLTLKQMLEYYLHHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRTK+ L KA  RAH+L GL IA+ ++DE+++IIR S N + A+ +L+Q       
Sbjct: 363 DVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQ------- 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD I  E   L  +I +
Sbjct: 416 -------------------NFGLDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT+I EG    +EDED I ++D+++T++H 
Sbjct: 457 YKDILAKPERIDEIIYNELLDIQKRFGDDRRTKIAEGEAVSIEDEDLIEQKDVLLTLTHN 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    ++ Q RGG+G  G+ ++D+DF+  L   STH  +LFF++LG VY +K + 
Sbjct: 517 GYIKRMSADEFKVQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L++GE+I  ++  PE     ++ Y+ F TK G V+R K+S+F
Sbjct: 577 IPEFGRNAKGLPIVNLLELDKGEKIQAVINVPEGA---DDNYLFFVTKMGTVKRTKVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I RSG IA+ L   DE+ +V T   + +I++ T LG  V F    +R   GR + GVR
Sbjct: 634 QNIRRSGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+   I+                                            
Sbjct: 693 GINLRDNDYVVGSDIL-------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  +L +SEKG+GKRT++ ++ +  R GKGI+  ++++ N  G L  V 
Sbjct: 709 ---------EPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            VN ++ I+L++  G +IR  V+++    RAT GV +       +V S+  + ++  
Sbjct: 758 VVNGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDGAQVASITAVPKASD 814


>gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase
           [Candidatus Kuenenia stuttgartiensis]
          Length = 838

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 539/902 (59%), Gaps = 88/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E ++ I  + I +EM++SYL+YA++VI+ RA+PD RDGLKP  RRIL  M  + +    
Sbjct: 2   TERKENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K+ KCA+I+G+  G YHPHG   +Y  L RMAQD++ R  LI+GQGNFGS+DGDPPAA R
Sbjct: 62  KFRKCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+      +++DL K TVD+ PNYD +  EPVVL +++PN+L NG  GIAVGMAT+
Sbjct: 122 YTEARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN  E+ DG   VIDNP++ ++ LM +I GPDFPTGA I G +GIK  Y TGRG+I+
Sbjct: 182 IPPHNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGTSGIKEGYKTGRGTII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +H+E +   R+ IVVTEIPYQ+N+  +LE+IA LVRE+ +  I+D+R+ESDR G R
Sbjct: 242 VRAKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LK+G   +V+LNQLY++T LQ  FS+ M+AL   +PE   L  +L  ++  R+ V+
Sbjct: 302 LVIDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNRPETLNLKQMLICYIEHRKVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           V+RT++LL KA++RAHVL GL IA+ N+D V+ +I+ S   + ARR L+           
Sbjct: 362 VKRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLIS---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q  AIL++RL RLTGL +  I  E   L  +IKE   
Sbjct: 412 ----------------TFSLSEIQANAILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L IIK+++  +K++    RRT IV  + D+E ED I  E++ V +SH GY+K
Sbjct: 456 ILANEKLVLDIIKKDVAEIKEQFGDKRRTEIVGAVGDLEREDLITEENVTVIISHEGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR Q+RGGKG  G  M++ DF   LF+ STH  +LFF+  G VY  KV+ +P  
Sbjct: 516 RLPLSAYRKQQRGGKGVIGAEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQM 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +G+ALIN+L L +GE +T+ +P        ++  +V AT HG +++  L  +    
Sbjct: 576 GKITKGRALINLLELKEGENVTSFIPVRNF----DDRQLVMATSHGIIKKTVLKAYGNPK 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD  D ++ V+    + D++L T+ G+ VRF    +R   GR S GV+GI L
Sbjct: 632 KGGIIAINLDEGDTLIGVKLTNGKQDLILGTEQGKAVRFSEEDVRSV-GRVSRGVKGIKL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+V  M +V                                                
Sbjct: 691 KNGDKVCGMVVVDD---------------------------------------------- 704

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  ++T+ E GFGKRT+  ++   NR G+G+     ++ N  G +V +  V +
Sbjct: 705 -------ESSLMTICENGFGKRTNFEEYSAKNRGGQGVINIKTTERN--GKVVGLLDVRE 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI--VDEAE 907
            D++I+++  G +IR PVN IRI  R T+GV +F   K ++++SV R+   E    D+ E
Sbjct: 756 TDELIMITKGGKIIRTPVNTIRIIGRNTQGVKLFDIGKADKLISVARVIPEENPATDDLE 815

Query: 908 ST 909
           + 
Sbjct: 816 TE 817



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 92/220 (41%), Gaps = 15/220 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +K+  L  Y   ++GG     +   D      L   +    ++  +  G   +  
Sbjct: 614 TSHGIIKKTVLKAYGNPKKGGIIAINLDEGDTLIGVKL--TNGKQDLILGTEQGKAVRFS 671

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      +RG   +  + L  G+++  ++         +   ++   ++G  +R   
Sbjct: 672 EEDVRSVGRVSRG---VKGIKLKNGDKVCGMVVVD------DESSLMTICENGFGKRTNF 722

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   NR G+  + + + +    V       + +++++ TK G+ +R P++ IR+  GR
Sbjct: 723 EEYSAKNRGGQGVINIKTTERNGKVVGLLDVRETDELIMITKGGKIIRTPVNTIRII-GR 781

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           N+ GV+   + K D++IS+A V+  +    + +     + 
Sbjct: 782 NTQGVKLFDIGKADKLISVARVIPEENPATDDLETENDIP 821


>gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +  +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
 gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg]
          Length = 899

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/905 (41%), Positives = 547/905 (60%), Gaps = 91/905 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   DENIFDKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP+VL ARYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HN+ E++   V +IDN     +  ++ L+EI++GPDFPTGA+ILG  GI+ AY TG
Sbjct: 182 NIPPHNMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTRGIEEAYRTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R V++IE  +  + +I+VTE+PY VNKA ++EKIAELVR+K+I  I +LRDESD
Sbjct: 242 RGKIRVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESD 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+ IEL+R  +A+VILNQLY++T LQ  F V M+AL   +P+  TL+ +L  ++  
Sbjct: 302 REGMRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLALVNNQPKVLTLLEMLSYYLKH 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +EEVV RR  Y LNKA++RAH+L GL  A+  +DEV+ IIR S N   A+  L++R    
Sbjct: 362 QEEVVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIER---- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                     ++Q +AI+++RL  LTGL R+ +++E   L   I
Sbjct: 418 ----------------------FEFDDIQAQAIIDMRLRALTGLEREKLQDEFAELQRRI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E   IL+    LLG+IK E+  + D+    RRT I     D+  ED I  E+ V+ ++ 
Sbjct: 456 AEFEAILADEKLLLGVIKGEIQVINDKFGDERRTSIGFDEFDISMEDLIPDENTVIAMTR 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           LGY+KR+ +  +++Q RGGKG  G+   DEDF+ DLF+ +TH  ++FF++ G VY+ K +
Sbjct: 516 LGYIKRMTIDNFKSQHRGGKGIKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKAY 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  ARG A++N+L L   ERIT I+   E +   +N Y+  ATK G V++ K+ +
Sbjct: 576 EIPESSRTARGTAIVNLLQLLPEERITAIIALKEYK---DNRYLFMATKDGIVKKTKIKE 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I ++G  A+ L   DE++ V+T   + DI+L TK G C+RF    +R   GR S+GV
Sbjct: 633 YQNIRKTGLQAINLREDDELIEVKTTNSQKDIVLVTKNGMCIRFHEKDVRN-TGRASMGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G++L  GD+V++M I                                            
Sbjct: 692 IGMNLTNGDEVVAMQI-------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      + +++LTVSE G GK T   +F    R GKG++   +++  + G +V  
Sbjct: 708 ---------HTQGKYLLTVSEYGLGKLTDLDEFTPQRRGGKGVKCYKITE--KTGNVVGA 756

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902
             VN+  ++++++++G +IR+ VN I I  R T GV + +    KD RV S+ +++ES +
Sbjct: 757 KAVNEEHEVMIITNEGIIIRLEVNGISILGRITSGVKLINIDAGKDIRVASLAKVKESSM 816

Query: 903 VDEAE 907
             E +
Sbjct: 817 NSEED 821


>gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/894 (41%), Positives = 551/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDENIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 98/241 (40%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +     +  +     + +  +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    +DE + +V    ES+  D+
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDENIQTV-INVESDRSDD 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511]
 gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511]
          Length = 843

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/890 (42%), Positives = 549/890 (61%), Gaps = 87/890 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  +G+  V I + +Q SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 6   ENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTHRAA 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGS+DGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  LL D+ KDTVDF PNYD S +EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L E++D  +  ++NP+ +++ LM++++GPDFPTG VI G+ GI +AY+TGRG I +
Sbjct: 186 PPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIFGKKGIIDAYSTGRGRIKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIE+   +RE IV+ E+PYQVNK+ ++E IA+LVR+K+I  I+++RDESDR+G RV
Sbjct: 246 RAKTHIEQHK-NREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A +D++LN L++ T +Q+ F + M+A+   +P+ FTL  +L  F+  R+ V++
Sbjct: 305 VIELKRDAMSDIVLNNLFKSTQMQTTFGIIMLAIVNKEPKVFTLPELLDLFINHRKTVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KAR RAH+L GL IAV N+DEV++IIR S +   AR  LM R          
Sbjct: 365 RRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSR---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAILE+RL RLTGL  + I +EL  L   I+    I
Sbjct: 415 ----------------FDLSEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLESI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S + +  IIK+ELL VK+     RRT IV+   D++ ED I  E MVVT++H GY+KR
Sbjct: 459 LKSETMIEEIIKKELLEVKEAFSDERRTEIVDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP+  Y  QRRGGKG++ V   ++DF+   FI +TH +++F +  G +Y  KV+R+P GS
Sbjct: 519 VPVKQYEKQRRGGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+++L++ E+I  I+P  +      +  +VF T++G V+R  LS++  I  
Sbjct: 579 RTAKGKAVVNLINLDKDEKIKAIIPTQDFN---EDKSLVFFTRNGIVKRTNLSEYSNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE++  +    +   + + TK G C+RFP+S +R   GR + GV  I  
Sbjct: 636 VGVRAINLDENDELIDAKIIKPDTKWLFVVTKKGMCIRFPVSDVREI-GRVARGVTAIKF 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD V     + + + +                                         
Sbjct: 695 KIDGDYVCGATTIENEEDE----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG GKRT + ++R  +R+GKG+ A  ++   + G +V V  V 
Sbjct: 714 -----------ILIVSEKGMGKRTPASEYREQSRAGKGVIAMKLTP--KTGDVVGVVFVE 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++  ++ ++  G +IRV +  IR A RAT GV I +    +RVVS+ +  
Sbjct: 761 EDKDLMCLTSAGKMIRVDMQSIRRAGRATSGVKIVNVEGKDRVVSIAKCP 810


>gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17]
 gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17]
          Length = 881

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/902 (41%), Positives = 547/902 (60%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y
Sbjct: 8   DHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 68  KKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 128 ECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+DGC A IDNP+IDL+ LM  I+ PDFPTGA I G  G+K+AY TGRG +V+R
Sbjct: 188 THNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA ++E IAELV+E +I  I++  DES RQG R+V
Sbjct: 248 AKAEIESDES-HDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDESGRQGMRIV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +R
Sbjct: 307 IDVKRDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R           
Sbjct: 367 RTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RL++LTGL  D +  E   L   I     IL
Sbjct: 416 ---------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K EL  VK++   PRRT I     +   ED    + +V+TVSH+GY+KR 
Sbjct: 461 NDPELCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRT 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G  
Sbjct: 521 PLSEFREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDR 580

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   +++   +     +DE   N+ YVVFATK+G V++  L  + +  
Sbjct: 581 NSKGRAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ +   DE++ V      N++++  + G+ VRF  S IR   GR S GVRG+ L
Sbjct: 641 ANGVIAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRL 699

Query: 730 AKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            +GD  V+ M +V  ++                                           
Sbjct: 700 DEGDDAVVGMIVVNDSET------------------------------------------ 717

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + ++ VSE G+GKR+   D+RI+NR GKG++   V++  + G LVA+  V 
Sbjct: 718 ---------ENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLSVTE--KTGRLVAIKNVT 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAE 907
           D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV ++  SE+    E
Sbjct: 767 DDNDLMIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVE 826

Query: 908 ST 909
             
Sbjct: 827 EE 828


>gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1]
 gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
 gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A
 gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315]
 gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1]
 gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180]
          Length = 828

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIQDN---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 707 -------QEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score =  104 bits (259), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G+RA  + +      L+ V   +  D II+ +  G  +R     
Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R+  GV      +D+RVV   RI++++ V
Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + +   ++                 +N  V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIQDNQEVLVITENGFGKRTSA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +D+              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           R ++GV+ + L    ++++  +V   D+   E     ++  ++ +
Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826


>gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
 gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101]
          Length = 885

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/895 (40%), Positives = 539/895 (60%), Gaps = 49/895 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   SESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LI+G GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ      +L D+  +TVDF  N+DGS QEP+VL +R P + +NG  GIAVGMATNI
Sbjct: 124 ECRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG VA+I N +I  + L++ I GPDFPTGA ILG++GI++AY  GRGSI +
Sbjct: 184 PPHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQILGKSGIRDAYTLGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        D+E I+VTE+PYQ NKAA++EKIAELV +K+I  I+D+RDESDR 
Sbjct: 244 RGVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDESDRN 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A   V+LN LY+ T LQ+ F  N++AL   +P+  TL   L+ F+ FR 
Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLALVNSEPQLLTLKKYLEVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLDE++++IR + +   A++EL++       
Sbjct: 364 ETITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIE------- 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ+ AIL+++L RLT L    I+ E   L ++I +
Sbjct: 417 -------------------NYGLSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+L II+ E + +K+   TPRRT I     +++D D I  E  ++ ++  G
Sbjct: 458 LQDILAKRERILEIIETEAIEIKERHATPRRTVIELAEGELDDTDLIANEKAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ + AQ R  +G+SG  M+++D V        H S+LFFS  G VY    +++
Sbjct: 518 YIKRMPVNSFEAQSRATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PIGS  ARG  ++ +L + + E++T+I+   E     ++ Y+V  TK G +++  LS F 
Sbjct: 578 PIGSRVARGVPIVQMLPIPRDEKVTSIVAVSEFT---DDKYLVMLTKGGYIKKTSLSAFA 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D +  V     ++ +++ +  G  + F      +R   GRN+ GV
Sbjct: 635 NIRSNGLIAISLGEGDSLRWVRRAKVDDSLIIGSSYGMAIHFRTDNKQLRPL-GRNTRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD++ISM I+  +  +    I        +  L     E      ++ +   N
Sbjct: 694 KSMKLIKGDELISMDILPSSIVENIADIDEENLELEEEELEIETDEIEEVESDEFTATNN 753

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG-IRATDVSKINEIGALVA 843
           I             ++L ++  G+GKR     F + NR GKG I      K  +   + A
Sbjct: 754 I-----------GSWVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAA 802

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +  VN+++++++++ KG +IR  ++ I I SR+  GV +      + +  V  + 
Sbjct: 803 LRVVNESEELMIITAKGIIIRQAIDAISIQSRSATGVRVQKLDDADAIAEVALVP 857



 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 7/130 (5%)

Query: 647 YVVFATKHGNVRRNKLSDFI------QINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           +V+  T +G  +R  +S F       +   + K   K   +D++ ++    +  ++++ T
Sbjct: 757 WVLVITTNGYGKRVPVSQFTLQNRGGKGRIATKFKQKKKKQDQVAALRVVNESEELMIIT 816

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  +R  I AI     R++ GVR   L   D +  +A+V   + +    I      + 
Sbjct: 817 AKGIIIRQAIDAI-SIQSRSATGVRVQKLDDADAIAEVALVPATETEETIEIEEGIMEAE 875

Query: 761 QRRLISGDTE 770
                    E
Sbjct: 876 VVETEEDMEE 885


>gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1]
          Length = 874

 Score =  858 bits (2216), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 539/900 (59%), Gaps = 62/900 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +   + +  I DEMQNS L YA++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K 
Sbjct: 4   NDNSKVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKA 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCA   G V+G+YHPHG+A++YDAL R+AQD+S+R  L++G GNFGS+DGD PAA RY
Sbjct: 64  YRKCADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAYRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K    +L D+ K+TVDF  NYD   +EPVVL +R+PN+LVNG  GIAVGMATNI
Sbjct: 124 TEAKMAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D    +I++PD  L+ LME I+GPDFPTG +I+G+ GI+ AYATGRG I++
Sbjct: 184 PPHNLGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIMGKAGIRAAYATGRGKIIL 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +H E+    R  I++ EIP+ + K  +L+ I +LV++KRI  +  +RDESD+ G RV
Sbjct: 244 RSRTHFEEIK-GRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDGMRV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A  +++LN+L+  T LQ    + M+AL   +P+  TL  +L+ ++ F+ +V+ 
Sbjct: 303 VIELKKDAMPEIVLNKLFALTQLQDTVGIIMLALVNGEPKILTLKQMLQHYLDFQVDVIQ 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA +RAH+L G  +A   +DEV+ IIR S   + A+  +++R  +  D+  L
Sbjct: 363 RRTRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDV-DMSAL 421

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           +D        +  +    LSE Q  AI+++RL +LTGL R  I +EL  L  +I +  DI
Sbjct: 422 LDRAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISDFEDI 481

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  +R+ GII  +L +++ +    RRT I     +++ ED I  ED VVT+++ GY+KR
Sbjct: 482 LADVNRVYGIIIDDLNTIRKKFSDDRRTSIENVSGEVDIEDLIPEEDCVVTLTNNGYIKR 541

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PL+ Y+ Q RGG+G +G+  R+EDFV ++FI  +H +VLF S+LG +YK K + +P GS
Sbjct: 542 MPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIMYKLKCYEVPDGS 601

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             +RG  LIN++ L++GE+I  ++   +      + Y+   TK G ++R+ LS +  + +
Sbjct: 602 KASRGFNLINLIPLSEGEKIAAMIKTTDFS---EDKYITIVTKKGKIKRSNLSLYKNVRK 658

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ LD  DEI  V        I + T+ G  +R   +  R  + R++ GVR I L 
Sbjct: 659 NGLIAIGLDEGDEIAGVRMTDGNAQIFVATRNGMAIRIEENKGRSMS-RSAHGVRAIKLR 717

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+S+A V                                                 
Sbjct: 718 EGDYVVSIARVREG---------------------------------------------- 731

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LTV+E G+GKRT    +RI NR G G+    V   +  G +  +  V++ 
Sbjct: 732 -------ATLLTVTENGYGKRTELDSYRIQNRGGYGLTNYKVD--DVRGHVCGIKIVDEE 782

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D IILVS  G +IR+  ++IR+  R  KGV +    +  +VV+  R  E +   E E  E
Sbjct: 783 DDIILVSSDGIIIRILASDIRVMGRIAKGVRVMRVNEGAQVVAFTR-AEHDDNAETEKVE 841



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 49/255 (19%), Positives = 100/255 (39%), Gaps = 15/255 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +  V+  G +KR  LS+Y+  R+ G     + + + D +  + +   +  +   
Sbjct: 630 FSEDKYITIVTKKGKIKRSNLSLYKNVRKNG--LIAIGLDEGDEIAGVRMTDGNAQIFVA 687

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +        G   +R    +  + L +G+ + +I              ++  T
Sbjct: 688 TRNGMAIRI---EENKGRSMSRSAHGVRAIKLREGDYVVSIARVR------EGATLLTVT 738

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L  +   NR G         D    V   +   +E+DI+L +  G  +R  
Sbjct: 739 ENGYGKRTELDSYRIQNRGGYGLTNYKVDDVRGHVCGIKIVDEEDDIILVSSDGIIIRIL 798

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S IRV  GR + GVR + + +G QV++     H D    E++  +    A+        
Sbjct: 799 ASDIRVM-GRIAKGVRVMRVNEGAQVVAFTRAEHDDNAETEKVEQLTEEQAKEAEEEAKL 857

Query: 770 EEITSLKNDSSVEGN 784
           EE   +  ++    +
Sbjct: 858 EEANEVVIEADETED 872


>gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
 gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae
           ATCC 33574]
          Length = 881

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/902 (41%), Positives = 547/902 (60%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G   +K Y
Sbjct: 8   DHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 68  KKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 128 ECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATNMP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+DGC A IDNP+IDL+ LM  I+ PDFPTGA I G  G+K+AY TGRG +V+R
Sbjct: 188 THNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGRGRVVMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA ++E IAELV++ +I  I++  DES RQG R+V
Sbjct: 248 AKAEIESDES-HDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDESGRQGMRIV 306

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +R
Sbjct: 307 IDVKRDANANVILNKLFKMTALQSAFSVNNIALVNGRPRLLSLKECVKYFVEHRHDVTIR 366

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R           
Sbjct: 367 RTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER----------- 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RL++LTGL  D +  E   L   I     IL
Sbjct: 416 ---------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRIL 460

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K EL  VK++   PRRT I     +   ED    + +V+TVSH+GY+KR 
Sbjct: 461 NDPELCKQVMKDELQEVKEKYGDPRRTEIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRT 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G  
Sbjct: 521 PLSEFREQARGGVGSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDR 580

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   +++   +     +DE   N+ YVVFATK+G V++  L  + +  
Sbjct: 581 NSKGRAIQNLLNIEGDDQVNAFLRLRGLDDEEFINSHYVVFATKNGTVKKTLLEAYSRPR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ +   DE++ V      N++++  + G+ VRF  S IR   GR S GVRG+ L
Sbjct: 641 ANGVIAINIVEGDEVVDVRLTNGNNELIIANRNGRAVRFHESTIRTM-GRVSTGVRGMRL 699

Query: 730 AKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            +GD  V+ M +V  ++                                           
Sbjct: 700 DEGDDAVVGMIVVNDSET------------------------------------------ 717

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + ++ VSE G+GKR+   D+RI+NR GKG++   V++  + G LVA+  V 
Sbjct: 718 ---------ENVMVVSENGYGKRSQVEDYRITNRGGKGVKTLAVTE--KTGRLVAIKNVT 766

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAE 907
           D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV ++  SE+    E
Sbjct: 767 DDNDLMIINKSGVVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSELEATVE 826

Query: 908 ST 909
             
Sbjct: 827 EE 828


>gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
 gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A
 gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394]
 gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750]
 gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo]
 gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           pyogenes ATCC 10782]
          Length = 828

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/891 (41%), Positives = 552/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G+RA  + +      L+ V   +  D II+ +  G  +R     
Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R+  GV      +D+RVV   RIR+++ V
Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + +   ++                 +N  V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIRDNQEVLVITENGFGKRTSA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +D+              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           R ++GV+ + L    ++++  +V   D+   E     ++  ++ +
Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826


>gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150]
 gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150]
          Length = 823

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 553/900 (61%), Gaps = 84/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V +T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G+TGI  AY TG+GSIV+R
Sbjct: 182 PHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKTGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE N L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPGRVIAIIKEELDESKRKFGDARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R+Q+RGG+G  G  + D+DFV D+   STH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I T++    DE+S  N ++VF T+ G V+R K ++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTVINAKSDEAS-ENNHLVFVTRQGLVKRTKEAEFKNIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+KL   DE+++V   T   +I++ TK G  VRF  + IR  + R + GV+G++L 
Sbjct: 635 NGLIALKLREGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMS-RMAAGVKGVTLR 693

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GDQV+  A +                                                 
Sbjct: 694 DGDQVVGAAAI------------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L +SEKG+GKRTS+ ++    R GKGI+  +++  N  G L  +  V+ N
Sbjct: 705 ----TDDQEVLIISEKGYGKRTSATEYPTKGRGGKGIKTANITDKN--GHLAGIATVSGN 758

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + I++++D G +IR  V  I    RAT+GV +       R+V+   +   E+V   E+ +
Sbjct: 759 EDIMVMTDTGVIIRTAVANISQTGRATQGVKVMRLDNSARIVTFALVEPEEVVKAPEADQ 818


>gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/902 (41%), Positives = 552/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  +IL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLANIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822]
 gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822]
          Length = 852

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/904 (41%), Positives = 541/904 (59%), Gaps = 62/904 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I    ++ EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   QPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LIEG GNFGS+D DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  + + LL D+  +TVDF   +DGS QEPVVL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+I NP+I    LM+ I GPDFPTG  ILGR+GIK+AY +GRGSI +
Sbjct: 184 PPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQILGRSGIKDAYISGRGSITM 243

Query: 251 RGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DR+ I+VTE+PYQ NKAA++EKIAELV +KRI  IAD+RDESDR 
Sbjct: 244 RGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A A V+LN LY+ T +Q+ F  NM+AL   +P+   L   L  F+ FR 
Sbjct: 304 GMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGEPQILNLKDFLGVFLEFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V++RRT Y L KA +R H+L GL +A+ANLD ++++IR + +  +A+REL+++      
Sbjct: 364 QVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ  AIL+++L RLT L  + I+ E   L  +I +
Sbjct: 418 --------------------FGLSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL  R R+  II++EL  +K    TPRRT+IVE    + D D I  E  V+ ++  G
Sbjct: 458 LTDILQRRERVDQIIQEELTQLKSTHATPRRTQIVEEEGGIVDIDLIANEQAVILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P++ +  Q R  +G+SG  ++++D V        H  +LFFS  G VY    +++
Sbjct: 518 YIKRMPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+++   E      + Y+V  T+ G +++  LS + 
Sbjct: 578 PSSSRTARGVPIVQMLPIPKDEKITSMVAVSEFT---EDQYLVMLTRQGYIKKTALSAYA 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D++  V    +E+ I++ T+ G  + F      +R   GR + GV
Sbjct: 635 NIRANGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPI-GRTARGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R + L   D++IS+ I+                              I + +++   E  
Sbjct: 694 RSMKLKGTDEIISVDILP-----------------------GQVVANIGTSEDEIEDENL 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            SEE   E      ++L ++  G+GKR     FR+ NR+G G++A      N    L A+
Sbjct: 731 ESEELVNEETHVGPWVLAITTGGYGKRVPVNQFRLQNRAGMGVKAIRF--KNAQDQLAAI 788

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN  D++++V+ +G +IR  V+ I   SR   G+ +     D+ + +V  +  +   D
Sbjct: 789 HIVNQEDEMMIVTSRGIIIRQAVDAISPQSRMATGIRVQRLDDDDAIAAVALVPPAGEDD 848

Query: 905 EAES 908
           E+E 
Sbjct: 849 ESEE 852


>gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5]
 gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5]
          Length = 821

 Score =  857 bits (2215), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/907 (40%), Positives = 550/907 (60%), Gaps = 88/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +  ++     I  V I  EM+++Y+ YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MSEETLFPED-----IQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV +NK Y K ARI G+V+GKYHPHG++A+YD + RM QD+SLR  LI+GQGNFGSV
Sbjct: 56  HELGVAYNKPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSV 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL++ +  LL DL K+TV+F+ NYD + QEP +L AR PN+L+NG  
Sbjct: 116 DGDSAAAMRYTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSS 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVDG + ++D P+ D+  +M++I+GPDFPT   I G+ GI +A
Sbjct: 176 GIAVGMATNIPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFITGKQGIIDA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + IE +   RE I+VTEIPYQVNK+ +LEKI ELV+EKRI  IADLR
Sbjct: 236 YRTGRGRIRMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+V+E+KRG  A+ ILN+LY++T ++  F V  +AL    P    L  IL+ 
Sbjct: 296 DESDREGMRIVVEIKRGEHAESILNRLYKFTPMEGTFGVINLALVNNSPRVLNLKEILEY 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R E+V+ R K+ L  A  +AH+L GL +A+ NLDEV+  IR S   + A+ +L+ R
Sbjct: 356 FIEHRREIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIAR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q +AIL++RL RLTGL  + I  +   +
Sbjct: 416 --------------------------FQFSDEQAQAILDMRLQRLTGLEIEKIIRDYEEV 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +  DIL++ SR++ II+ EL  ++++   PRRT I++   +++ ED I  E  V+
Sbjct: 450 LALIDDLQDILANDSRVIDIIRTELHEIREKYADPRRTIIIDDHEEIDLEDLIADEPTVI 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+++ GYVKR P   Y++Q RGGKG+ G+ +++ DFVTD+F+ STH  ++ F+  G VY 
Sbjct: 510 TLTNDGYVKRTPADTYKSQHRGGKGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P     +RGKA++N + L + E+I+T+ P  E      + +++F TK+G  ++ 
Sbjct: 570 IKAYNIPEQGRNSRGKAIVNFVDLEKDEKISTVFPVREFS---EDKFLLFITKNGIAKKT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS++  I + G  A+ LD  DE++ V      N +++TT+ G  + F    +R   GR 
Sbjct: 627 PLSEYANIRKKGVNAINLDDDDELIQVMHTNGSNSVMVTTRFGASIHFEEQEVRAV-GRV 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV+GI+L   D V+S   +                                       
Sbjct: 686 SRGVKGITLVNNDYVVSAETISKDIDPS-------------------------------- 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             +ILTV++ G+GKRT + ++R+ +R GKG      +  N  G 
Sbjct: 714 ------------------YILTVTDLGYGKRTITDEYRLQSRGGKGNLTIKTTTKN--GL 753

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V D D+I+L+S +G +IR+    IRI  R T+GV +   ++D+R++SV  + ++
Sbjct: 754 VVRGLQVVDGDEILLLSKEGKIIRLDSKHIRITGRNTQGVKLVDLSRDDRIISVA-VAKT 812

Query: 901 EIVDEAE 907
           +  +EA+
Sbjct: 813 DDEEEAQ 819


>gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/902 (41%), Positives = 552/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228]
          Length = 864

 Score =  857 bits (2214), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/901 (41%), Positives = 555/901 (61%), Gaps = 86/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +++   +  + I  EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ +  +G+   K
Sbjct: 2   DQKAARVKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+ A+YD + RMAQD+S R +L++G GNFGS+DGD  AA R
Sbjct: 62  PHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  ++ D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGM+T+
Sbjct: 122 YTEARMSPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+ P+I+   LM  I+GPDFPTG  I+GR  I  AY  GRG + 
Sbjct: 182 IPPHNLGEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIMGRGSIYKAYKNGRGKLT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + +E  S  R+QI+V E+PYQVNKA +++KIA+LV+ +++  I+D+RDESDR G R
Sbjct: 242 VRAKTRVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+  V+LNQLY+++ LQ  FSV M+AL   +P+  +L  IL+ ++  ++EVV
Sbjct: 302 IVIELKREATPKVVLNQLYKHSRLQVTFSVIMIALVDKEPKVLSLKQILEHYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L+KA DRAH+L G  IA+AN+DE+V +I+ +   +TAR  LM+          
Sbjct: 362 RRRTQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLME---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q  AIL +RL  LTGL RD I +E   L  +I     
Sbjct: 412 ----------------NYKLSETQANAILRMRLQSLTGLERDKIESEYTDLQEQITYYRS 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  +LL IIK+E+L++K + +  RRT I+    D+E ED I  E +VVT+++ GY+K
Sbjct: 456 ILASEEKLLEIIKEEILAIKAKYNDERRTSIMNRATDLELEDLIEEEQIVVTMTNQGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL +YR+QRRGGKG  G+  ++EDFV ++F  +TH   LFF++ G VY+ K +++P  
Sbjct: 516 RMPLDLYRSQRRGGKGVIGISTKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPET 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QARG A+IN+L L +GE+I  ++P  E      + Y++ ATK+G +++  L ++   N
Sbjct: 576 GRQARGTAIINLLELEEGEKINAVIPIKEFP---ADAYLIMATKNGLIKKTALEEY-NTN 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L   DE++ V     + +I L T+  + + F  + +R   GRNS GV+GI+L
Sbjct: 632 YTGLIAINLRENDELIGVRVIEAKENIFLVTRNAKAIHFSEADVRSV-GRNSYGVKGINL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+VI + I                                                 
Sbjct: 691 ETEDEVIDLGI------------------------------------------------- 701

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L ++E G+GKRT   ++R+ NR GKGI   ++++ N  G L A   V+D
Sbjct: 702 ----DSAGDELLVITENGYGKRTLISEYRVQNRGGKGILTANLTEKN--GQLAAARIVDD 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           + +++ ++  G +IRV  +EI    R T GV I +  ++++VVS+ RI +  + D+ ++ 
Sbjct: 756 SLEMMAITQAGIIIRVAASEISTTGRNTMGVKIINVGEEDQVVSLARINDDILEDQEDNK 815

Query: 910 E 910
           E
Sbjct: 816 E 816


>gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
 gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           australis ATCC 700641]
          Length = 820

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/893 (40%), Positives = 543/893 (60%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNPD+    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL +++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLREILGSYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV++IIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +   PRRT ++   +L +EDED I   ++++T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSLEDEDLIEETNVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+   +D S   + Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDDGESIQTIINVAQDRS--EDAYLFFTTRSGLVKRTSVAEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  S +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLKDEDELINVFLTDGNTDVIIGTKFGYSVRFKESVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G                                                      +   
Sbjct: 693 PG-----------------------------------------------------DQVVG 699

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             +   +  +L ++EKG+GKRT + ++    R GKGI+  +V+  N  G L  +  V  +
Sbjct: 700 ASVITDQDEVLIITEKGYGKRTRADEYPTKGRGGKGIKTANVADKN--GPLAGLMTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + ++++++ G +IR  V  I    R+T GV +    +D ++V+   ++  E  
Sbjct: 758 EDLMIITNTGVMIRTSVANISQTGRSTMGVKVMRLDQDAQIVTFTTVQADEKD 810



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 95/239 (39%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   +Q +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIKIIRNSQTD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDDLIALIADLADILAKPERVVAIIKEELDEVKRKFGDPRRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEETNVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            +D+++  ++KG + R+   EI    R  KG   V +      E + ++  + +    D
Sbjct: 550 THDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDDGESIQTIINVAQDRSED 608


>gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
 gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565]
          Length = 859

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/894 (39%), Positives = 544/894 (60%), Gaps = 86/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDNP+I ++ LME ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 PHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIYGVSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IV+TEIPY VNKA +++ IA+LV +K+I  I++  DESDR G R+V
Sbjct: 243 ARAEIESGQA-HDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K F+  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALIHGRPKTLNLRDLIKYFIEHRREVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     ED    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDNVTAYLRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+V+ M  +   +                                          
Sbjct: 695 DNDGQDEVVGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + ++ VSE+G+GKR+   D+R +NR GKG++  ++++  + G LV +  V
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITE--KTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++   
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTE 815


>gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
 gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279]
          Length = 929

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/892 (40%), Positives = 527/892 (59%), Gaps = 91/892 (10%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
            EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+
Sbjct: 79  KEMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVI 138

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG++A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  L
Sbjct: 139 GKYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMEL 198

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L DL KDTVD++PNYD S  EP  L AR+PN+LVNG  GIAVGMATNI  HN+ E ++  
Sbjct: 199 LRDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAIEAT 258

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
             +ID+PD  +D LM+I+ GPDFPTGA+I+G  GI+ +Y TGRGSI +R  +H+E T   
Sbjct: 259 CYLIDHPDATVDELMQIMPGPDFPTGALIMGTEGIRQSYETGRGSITVRAKAHVESTKTG 318

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           R ++V TEIPY VNK  + EKIA LV EKRI  I+D+RDES ++G R+VIELK+G    V
Sbjct: 319 RSRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQV 378

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +LN LY+YTSLQ+ F  N +AL    P+  +L  +L+ ++  + +VV RRT++ L KA+ 
Sbjct: 379 VLNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQA 438

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAH+L G  IA+ ++DEV+ IIR S     A   L++R                      
Sbjct: 439 RAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIER---------------------- 476

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                  S  QT AILE++L RLTGL RD I  EL+ L   I    D+L+   ++LG+IK
Sbjct: 477 ----FGFSPEQTTAILEMKLRRLTGLERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIK 532

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +E+  +  +    RRT+I     D++ ED I  EDMVVT++H GYVKR+P++ YRAQ+RG
Sbjct: 533 EEMREIARKFGDKRRTQITHVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRG 592

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG SGV ++++D + ++FI STH  VLFFSS G VY+ KV  LP G+ QARG A++N+L
Sbjct: 593 GKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLL 652

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
               GE+I +++          + Y++FAT  G V++  ++ + +  R G IA+ + + D
Sbjct: 653 PFEDGEKIASVISCRAFP---EDEYLMFATASGMVKKTAMAAYDRSRRDGLIAINIKAGD 709

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            +L V      + I++ T  G+ + F    +R   GR++ GVRGI++  G +V+ M    
Sbjct: 710 RLLGVRRVKPGDKIIMATTAGKAIMFCEDQVRA-TGRDTSGVRGITMKGGTEVLGM---- 764

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                            E+      +  
Sbjct: 765 -------------------------------------------------EITNGSGELFV 775

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V+E G+GKRT   ++   NR G+G+    +++    GAL A+  V    ++ ++++  T+
Sbjct: 776 VTEHGYGKRTPVAEYPEQNRGGQGVYTIQMTER--KGALAAMKVVGPQHELFIITENATV 833

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI------RESEIVDEAES 908
           IRV   EI    RAT+GV + S  + +RV +V R+       E  + DE E 
Sbjct: 834 IRVKTAEISQTGRATQGVKMMSVDEGDRVCAVARMTAGKDKPEDSVEDEGEE 885


>gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/894 (41%), Positives = 549/894 (61%), Gaps = 85/894 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEE 811



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 98/241 (40%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R +  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQTQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +     +  +     + +  +    + G +   
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    +DE + +V    ES+  D+
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/902 (41%), Positives = 552/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  N
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
 gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1]
          Length = 828

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/898 (40%), Positives = 531/898 (59%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  +SI DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K Y
Sbjct: 2   QRDKILPISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG+ A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TV F  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKNIAGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVV+G +A+I+NP+I +D +ME I  PDFPT  +I G  G+K AY TGRG +VIR
Sbjct: 182 PQNLSEVVNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIYGYEGVKQAYHTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI EL+  K+I  IAD+RDESDR G R+
Sbjct: 242 ARAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V ++AL    P+   L  +++A++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDGVPKVLNLKEMMEAYLKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L  A  +AH+L GL I + NLDEV+  IR SPN   A+ +LM++          
Sbjct: 362 RRTTYELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q++A+LE+RL RLTG+ RD I  + N     I+E   I
Sbjct: 412 ----------------FGLTELQSKAVLEMRLQRLTGMERDKIEKDYNETLALIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  + + IIK ELL VK      RRT I     +   ED I +ED+V+T++H  ++KR
Sbjct: 456 LANPEKRMQIIKDELLKVKQVYGDERRTEIRPQEGEFSIEDMIAQEDVVITITHETFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   R EDFV  +F+ STH  +LFF++ G  +  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQARHEDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ L  GE+I   +     +   + L+++ AT  G++++ ++  F +  R
Sbjct: 576 RAARGRSLANIMELQPGEKIKAYINVKTFD---DPLFIIMATAKGSIKKTEIEAFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE++       E+DI+L    G  VRF    +R   GR ++GV+GISL 
Sbjct: 633 NGIAAITIEDGDELIDARLTDGEHDIILAKNTGYAVRFAEKDVRPM-GRTAMGVKGISLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G+  ISM      D                                             
Sbjct: 692 EGETCISMVTSKRPDTS------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  KG+      +  ++G LV +  VND+
Sbjct: 709 ---------LLAVTDNGFGKRSKVEDYRLTRRGAKGVITLKAHE--KVGHLVGLLDVNDS 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I+++  G + R  V+ IR+  R T GV I    + + + +  R+ +S   +E E+
Sbjct: 758 DDLIIITSNGIVNRQHVSNIRLTGRNTSGVRIVRLMQGDTISATARVPKSVDEEENEA 815


>gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
 gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020]
          Length = 842

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 553/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V++NP++    LME+I GPDFPTGA+++GR+GI  AY TGRGSIV+R
Sbjct: 182 PHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVMGRSGIHRAYDTGRGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L ++KRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+ R
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYILHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELMQR           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E ++L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDALIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           S   R+  II +E+  VK +    RRT ++ G +   +++ ++ E+ V +T+S++GY+KR
Sbjct: 456 SKPERVQTIIIEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNMGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L+ GE I TI+   +      + Y  F TK G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDDGETIQTIINARK--VEVADKYFFFTTKGGVVKRTSASEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       DI++ T+ G  VRF  S+IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALNLKEDDELINVLLTDGTEDIIIGTRSGYSVRFNESSIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+  + +                                                 
Sbjct: 693 DEDMVVGASRITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +Q +L ++E G+GKRT++ ++    R GKGI+  +++  N  G L  +  V+ +
Sbjct: 706 ------DQEVLIITENGYGKRTAASEYPTKGRGGKGIKTANITAKN--GPLAGLTTVSGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++++++KG +IR  ++ +    RAT GV +    +D ++V+   +     V+E  STE
Sbjct: 758 EDMMIITNKGVIIRTSISNVSQTGRATLGVRVMRLDQDSKIVTFALVEPEPEVEEVNSTE 817



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 88/248 (35%), Gaps = 17/248 (6%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +      +  G VKR   S +   R+ G     + ++++D + ++ +      ++  +  
Sbjct: 608 DKYFFFTTKGGVVKRTSASEFNNIRQNG--LRALNLKEDDELINVLLTDGTEDIIIGTRS 665

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G+  +     +      A G   + +   +                  ++  V+  T++G
Sbjct: 666 GYSVRFNESSIRNMGRSATGVRGVKLRDEDM---------VVGASRITDDQEVLIITENG 716

Query: 656 NVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             +R   S++              +   +   +  + T + + D+++ T  G  +R  IS
Sbjct: 717 YGKRTAASEYPTKGRGGKGIKTANITAKNG-PLAGLTTVSGDEDMMIITNKGVIIRTSIS 775

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR ++GVR + L +  ++++ A+V       +     +  ++          + 
Sbjct: 776 NV-SQTGRATLGVRVMRLDQDSKIVTFALVEPEPEVEEVNSTEVSVVTDINETSPTSADG 834

Query: 772 ITSLKNDS 779
                ++ 
Sbjct: 835 DNQAPSEE 842


>gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1]
          Length = 872

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/906 (40%), Positives = 545/906 (60%), Gaps = 56/906 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              ++ + I +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G ++NKKY+
Sbjct: 2   SDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKYL 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YDA+ RMAQD+SLR +L+ GQGNFGS+DGDPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++QK  H +L DL K+TVD+  NYDGS + P VL AR PN+LVNG  GIAVGMATN+  
Sbjct: 122 MKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  ++P+I  D L+  I GPDFPTG +I GR+GI +AY TG+G + IRG
Sbjct: 182 HNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGIIHGRSGIIDAYRTGKGRLHIRG 241

Query: 253 VSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             HIE       + DRE+I+ T+IPYQVNKA +++ IA+LV  K+I  I ++RDESD++G
Sbjct: 242 RYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RV I+L+RG + +V++N L+  T L++ FS+NMVAL+  +P+  TL  ++ AF+  R+E
Sbjct: 302 VRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQPKLMTLRDLVAAFIRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKA  R H+L GLAIA+AN+D++++ I+ S N   AR  L+ R+W ++ +
Sbjct: 362 VVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQSAGV 421

Query: 428 KDLIDLIDDSSYTIGSDG---------------TMYLSEVQTRAILELRLARLTGLGRDD 472
             ++D     S                         LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   +  EI     IL     L+G+++ EL+ ++DE    R+T IV+   D   ED 
Sbjct: 482 LTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+S Y+AQ+RGGKGRS   M+++D +  L + STH  +L F
Sbjct: 542 IPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEHLLVTSTHAHILCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G V++ + + +PI S  ++G+ L+N+++L   E +T I+P  + +    N +V FAT
Sbjct: 602 TNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDELVTAILPVNDLK--DENSFVFFAT 659

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V+R  LS F  +   G  A+ L   D ++ V     E +I+L +  G+ +RF   +
Sbjct: 660 ASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFSNEGKAIRFKEQS 719

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR  + R + GVRG+                                      + + E +
Sbjct: 720 IRAMS-RVAKGVRGMR-------------------------------VNLLATTDEEELL 747

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++   +  +S      +  K+  IL   E GFGKRT   D+    R GKG+ A   
Sbjct: 748 DEDGDEVGDDFAVSRVVSLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKT 807

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G LV    V   + +IL+SDKGTL+R PV +I  A R  +GV +   A +E +V
Sbjct: 808 SERN--GQLVKAIAVTGEEDVILISDKGTLVRTPVAQIANAGRNAQGVKLIRIADEEVLV 865

Query: 893 SVERIR 898
            +  + 
Sbjct: 866 GMACVE 871



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 19/229 (8%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D       V   +  G VKRV LS +   R GG     +   D      +        ++
Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQFANLRAGGLRAIDLAEGDTLIGVAI--TDGEQEIM 704

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKAL--INILSLNQGERITTIMP-----------FP 637
            FS+ G   + K   +   S  A+G     +N+L+    E +                  
Sbjct: 705 LFSNEGKAIRFKEQSIRAMSRVAKGVRGMRVNLLATTDEEELLDEDGDEVGDDFAVSRVV 764

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQEN 694
               +     ++ A ++G  +R  + D+    R   G IA+K      +++     T E 
Sbjct: 765 SLVVAPKQGEILCACENGFGKRTPIDDYPTKGRGGKGVIAIKTSERNGQLVKAIAVTGEE 824

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           D++L +  G  VR P++ I   AGRN+ GV+ I +A  + ++ MA V H
Sbjct: 825 DVILISDKGTLVRTPVAQI-ANAGRNAQGVKLIRIADEEVLVGMACVEH 872



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 57/195 (29%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R    D  +    +  + +     +   ++L  ++  +LTVS  G+ K     D++   R
Sbjct: 511 RAELIDIRDEFGDERKTDIVDARHDFNREDLIPEQTVVLTVSRTGYAKTQPISDYQAQKR 570

Query: 823 SGKGIRATDVSKIN---------------------------------------------- 836
            GKG  AT + + +                                              
Sbjct: 571 GGKGRSATAMKEDDVIEHLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNL 630

Query: 837 ---EIGALV-AVFPVND-NDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              E   LV A+ PVND  D+   +   +  GT+ RV +++     R   G+     A+ 
Sbjct: 631 INLESDELVTAILPVNDLKDENSFVFFATASGTVKRVALSQFANL-R-AGGLRAIDLAEG 688

Query: 889 ERVVSVERIRESEIV 903
           + ++ V  I + E  
Sbjct: 689 DTLIGVA-ITDGEQE 702


>gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
 gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017]
          Length = 841

 Score =  857 bits (2213), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/917 (40%), Positives = 522/917 (56%), Gaps = 95/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +  +       +  V I  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPPN---SRGRVEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 58  YDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL +R PN+LVNGG 
Sbjct: 118 GNDPAAAMRYTEARLDPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EVVDG +  +DNPD      L ALM+ I+GPDFPT   ILG  G
Sbjct: 178 GIAVGMATNIPPHNLREVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGTQG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V  +E+ +  R  +VVTE+PYQVN   ++E IA L R+ +I  I
Sbjct: 238 IADAYRTGRGSIRMRAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGI 297

Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+ DES+ + G R+VI LKR A A V+LN LY++T LQ  F VNM+AL    P    L 
Sbjct: 298 ADIADESNSRGGMRIVITLKRDAVAKVVLNNLYKHTQLQYNFGVNMLALVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAHVL GLA A+ +LD V+ +IR SPN + AR 
Sbjct: 358 QMVRHYVNHQIDVIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEART 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + EVQ  AIL+++L +L  L R  I +
Sbjct: 418 GLME--------------------------LLDIDEVQATAILDMQLRKLAALERQRILD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L  +I +  D+L    R   I++ ELL + ++    RRT+I+    D+  ED I  
Sbjct: 452 ELAELEAKIADLQDVLDKPERQREIVRTELLEITEKYGDDRRTKIIPYEGDVSIEDLIAE 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  VLFF++ 
Sbjct: 512 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNK 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI +++  P  E      Y++  TK G
Sbjct: 572 GRVYRAKAYDLPEANRNARGQHVANLLAFQPDERIASVIQIPNYEV---APYLILGTKKG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+DF      G I + L   DE++     + E+D+LL +  GQ +RF  +   +
Sbjct: 629 LVKKSRLADFDSPRSGGLIGINLREGDELVGAVLASAEDDLLLVSSDGQSIRFHANDEVL 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+   +G +++S+ ++                                
Sbjct: 689 RPM-GRATSGVLGMRFNEGAELLSINVIKPGT---------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +E G+ KRT+  D+ +  R GKG+      
Sbjct: 720 -------------------------FLLVATEGGYAKRTAVEDYPVQGRGGKGVLTIQHD 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  + G LVA   V+ +D++  ++  G +IR P  E+R ASR TKGV + +  +   +++
Sbjct: 755 E--KRGRLVAALIVDADDELYAITSSGGVIRTPAAEVRRASRQTKGVRLINLGEGNTLLA 812

Query: 894 VERIRESEIVDEAESTE 910
           V R  +      AE  E
Sbjct: 813 VARNADRPSDVSAEEAE 829


>gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301]
          Length = 822

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 550/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
 gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414]
          Length = 864

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/879 (42%), Positives = 537/879 (61%), Gaps = 40/879 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GK
Sbjct: 1   MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143
           YHPHG+ A+YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRLQ   +  LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            D+  +TVDF  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG V
Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS--- 260
           A+I NP+I    LM+ I GPDFPTGA +LG +GI+ AY TGRGSI +RGV+ IE      
Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGTSGIREAYTTGRGSITMRGVATIETVQQRG 240

Query: 261 -GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DRE I++TE+PYQ NKAA++EKIA++V EKR+  IAD+RDESDR G R+VIELKR + 
Sbjct: 241 RQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDSY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN LY+ T LQ+ F  NM+AL   KPE   L   L+ F+ FR E + RRT+Y L K
Sbjct: 301 PRVVLNNLYKQTPLQANFGANMLALVNGKPEILNLKKFLEVFLDFRIESITRRTRYELRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A  R H+L GL IA++ LDE++ +IR +P+  TA+ EL+                     
Sbjct: 361 AEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELIT-------------------- 400

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DIL+ R R+L 
Sbjct: 401 ------NYGLSEVQADAILQMQLRRLTALEADKIRQEHEDLQTQIADLQDILARRERILE 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II+ E+  +K+   TPRRT I+ G  ++++ D I  E  ++ V+  GY+KR+P++ + AQ
Sbjct: 455 IIETEIAQLKESFSTPRRTVILPGEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            R  +G++   ++D+D +        H S+LFFS  G VY  K +++P+ S  +RG A++
Sbjct: 515 SRATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTSRGTAIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+I+P  E        Y+V  TK GN+++ +L+ F  I  +G IA+ L+
Sbjct: 575 QMLPIPREEKITSIVPVDEFSR---EEYLVMLTKGGNIKKTELASFSNIRANGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             D++  V     E+ IL+ ++LG  + F      +R  + R + GVR + L KGD+++ 
Sbjct: 632 EGDQLRWVRRARVEDSILVGSRLGMAIHFRCTHEQLRPLS-RATRGVRAMKLKKGDELVG 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I+  A  D                + + + E +     ++  +   +E          
Sbjct: 691 MDILPAAILDTLNTDEPETAEIEAVEIEAVEIEAVEIEAVETENQEETAE--VTSTGSIG 748

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856
            ++L ++  G+GKR     FR+ NR+G+G+ AT          L  +  V ND+D+I++V
Sbjct: 749 PWVLVITMGGYGKRVPVAQFRLQNRAGQGLMATKFKNRKGKDKLATLRIVNNDHDEIMMV 808

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + +G +IR  VN I I SR+  GV +    +++ +  V 
Sbjct: 809 TKRGIIIRQAVNAISIQSRSATGVRVQRLDEEDAINGVA 847


>gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
 gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis
           ATCC 33269]
          Length = 864

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/907 (41%), Positives = 546/907 (60%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  NDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNL EV+DGC A IDNP ID D LME I+ PDFPTGA I G  G+++AY TGRG
Sbjct: 183 ATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIYGLQGVRDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IVIR  + IE    + ++IV+TEIPY VNK  ++E IA+LV+E ++  I++  DES RQ
Sbjct: 243 RIVIRAKAEIE-VGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R 
Sbjct: 302 GMRIVIDVKREANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLALKDCVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A++ L  R      
Sbjct: 362 EVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  D +  E   L   I  
Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAH 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLG
Sbjct: 456 LQQILEDPELCKKVMKDELNEVKEKYGDDRRTKIIPAEHEFNAEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +R Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSEFREQARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G+  A+G+A+ N+L++   + +  I+     +DE   N+ YVVFATK+G V++  L  
Sbjct: 576 PEGAKDAKGRAIQNLLNIESDDSVNAILRLRGLDDEEFINSHYVVFATKNGTVKKTSLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ + + DE++ V      N++++  + G+ VRF    IR   GR + GV
Sbjct: 636 YSRPRTNGVIAINIANGDEVVDVRLTNGHNELIMANRNGRAVRFDEKTIRTM-GRTATGV 694

Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RGI L KG DQV+ M +V  +                                       
Sbjct: 695 RGIRLDKGDDQVVGMIVVNDSV-------------------------------------- 716

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ ++ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA
Sbjct: 717 -------------QETVMVVSENGYGKRSGVEDYRKTNRGGKGVKTMNIT--DKTGRLVA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D++ +++++  G  IR+ V + R+  RAT+GV + +   K++ + SV +   SE+
Sbjct: 762 IKNVTDDNDLMIINKSGITIRLAVADCRVMGRATQGVRLINLSKKNDVIASVCKTMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EATVEEE 828


>gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673]
 gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum
           WAL-14163]
 gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673]
          Length = 850

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/901 (41%), Positives = 542/901 (60%), Gaps = 92/901 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   EPNVFDKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+ G V +IDN      +  L+ ++EI++GPDFPTGA ILGR GI+ AY T
Sbjct: 182 NIPPHNLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATILGRAGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V  IE  +  + +IVVTE+PY VNKA ++EKIAELV+EK++  I DLRDES
Sbjct: 242 GRGKIRVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G RV IEL+R  +A+V++N+L ++T LQ  F V M+AL   +P    L  +L+ ++ 
Sbjct: 302 NREGMRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLALVNNEPRILNLKQMLEYYLQ 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL  A+ ++DEV++IIR S N   A+ +LM+R   
Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE+Q +AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FALSEIQAQAIVDMRLRALTGLEREKLENEYRELMAK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LLG+I++E++ + D+    RRT I     DM  ED I  +D+VV ++
Sbjct: 456 IAELKAILADEKKLLGVIREEIIVISDKYGDERRTAIGYDEYDMSAEDLIPDDDVVVAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           + GY+KR+    +++Q RGGKG  G+   DED++ DL + + H  V+FF++ G VY+ K 
Sbjct: 516 NFGYIKRMSSDNFKSQNRGGKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N+L L  GE+IT+I+   E E   ++ Y+  AT++G V++  L 
Sbjct: 576 YEIPEAGRTARGTAIVNLLQLMPGEKITSIIAMKEFE---DDKYLFMATRNGMVKKTSLK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L TK G C+RF  + +RV  GR S+G
Sbjct: 633 EYENVRKNGLQAIVLRENDELIEVKRTDNTEDIFLVTKKGMCIRFHETDVRV-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+   + D+VI M +    +                                      
Sbjct: 692 VIGMKFDEDDEVIGMQMSSQGEC------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L  SE G+GKRT   +F   NR GKG+R   +  I++ G L+ 
Sbjct: 715 ----------------LLVASEYGYGKRTPIEEFNCQNRGGKGVRCYKI--IDKTGDLIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESE 901
              V+++ +I+L++++G +I++ VN+I I  R T GV + S   D    V S+ ++RESE
Sbjct: 757 AKLVDNSREIMLITNEGIIIKMSVNDISIIGRNTSGVKLMSIDPDSGIAVASIAKVRESE 816

Query: 902 I 902
            
Sbjct: 817 N 817


>gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 873

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/885 (42%), Positives = 534/885 (60%), Gaps = 63/885 (7%)

Query: 11  EEEKGI---TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           EE   I     VSI DE++ SYL YA++VI+GRAIPD+RDGLKPVHRRIL+ M +  +  
Sbjct: 2   EETSNIQQKVPVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
              + KCAR+ G+V+GKYHPHG+ A+YDAL RM Q +SLR  LI+GQGN+GSVDGD PAA
Sbjct: 62  TGAHKKCARVVGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL + A  LL DL KDTVDF PNYD S  EP VL A++P +LVNG GGIAVGMA
Sbjct: 122 MRYTESRLSRMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGE++D  +A+I NPD+ L+ L+ ++ GPDFPTG +I G++GI  AY TGRGS
Sbjct: 182 TNIPPHNLGEIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIYGKSGIVQAYTTGRGS 241

Query: 248 IVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           I +RG S +EK   GDREQ+V TEIPYQVNKA ++ KIAE ++EKRI  I+++RDESDR+
Sbjct: 242 ITMRGRSQVEKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDRE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+     V+LNQLYR T LQ+ F V  +++   +P   +L   L  F+  R 
Sbjct: 302 GMRIVVELKKDIFPQVVLNQLYRLTDLQATFGVINLSIANGRPAVLSLKDTLSHFIEHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN-AS 425
           EVV RR ++ L +A  +  ++ GL +A +++D +V  IR S +P+ AR  L +       
Sbjct: 362 EVVTRRCRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLG 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           +        +       + G  +LSE Q +AILE+RL+RLTGL R+ +  E   L   I+
Sbjct: 422 EFLRRAGRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIE 481

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL+    L+ +I  EL  +K      RRT IV    +++ ED I  EDMVVT+SH 
Sbjct: 482 RLRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMVVTISHA 541

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR P S YRAQRRGGKG  G+  R+ED+V+ LF+ STH+ V FFS  G V+ +KV+ 
Sbjct: 542 GYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYE 601

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G+A++N + +  GE++  I P P  +      +VV  T+ G +++  L+++
Sbjct: 602 IPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFD---GETFVVTLTRRGQIKKTALNEY 658

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 G I ++++  D++ +      + ++++ T+ G  +RFP   +R   GR ++GV+
Sbjct: 659 ENYRDKGIIGVRIEEGDQLFTAALTDGKRELVIATRSGMSIRFPEDQVRP-TGRATMGVK 717

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD V+ + +                                             
Sbjct: 718 GIELDEGDVVVGLGVSGDGRDR-------------------------------------- 739

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L V E+G+GK+T   +FR+ +R GKG+   D S+ N  G +V V 
Sbjct: 740 --------------VLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERN--GPVVGVA 783

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V+ +D++++V+D+G +IR   +EIR   R  +GV I    +DER
Sbjct: 784 MVSPSDEVLIVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +          +  M  +     +   + +     K  + +    +E + ++L  +E  +
Sbjct: 476 LSQTIERLRAILADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQMEDLIQEEDMV 535

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S  G+ KRT +  +R   R GKG+   +  + + +  L   F  + +  +   SDKG
Sbjct: 536 VTISHAGYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQL---FVASTHSYVFFFSDKG 592

Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIV 903
            +    V EI  A R  KG  I +       E+V ++  +   +  
Sbjct: 593 KVFVKKVYEIPQAPRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGE 638


>gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
 gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4]
          Length = 859

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/901 (40%), Positives = 540/901 (59%), Gaps = 85/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I  + ++ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEFKENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ+WS R  L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     ++ NPD     LME I GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     +E+I+V E+PY VNKA ++E+IA+L R+KRI  I DL DESDR G R
Sbjct: 243 VRAKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+++R  SA V+LN LY+ TSLQ+ F  NM+A+    P+  +L  IL+ ++  +E V+
Sbjct: 303 VVIDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEIVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y   KA  RAH+L GL IA+ ++DE++RIIR S   + A+  L++          
Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE Q++AIL++R+ RLTGL RD I  E   L   I +  D
Sbjct: 413 ----------------TYGLSEKQSQAILDMRMVRLTGLERDKIEAEYTELMALIADMAD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++  R+  II+ ELL V++     RRT ++   +L +EDED I  ED+V+T++  GY+
Sbjct: 457 ILANPERVHTIIETELLEVQERFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S +++QRRGG+G  G+ + D+DF+  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPSSEFKSQRRGGRGVQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++ GE +  ++    +      LY+ F T+ G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGVDSGETVQAVINVRGEAE--EGLYLFFTTRLGTVKRTDVKAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++SV     + +I++ T +G  V F    +R   GR + GVRGI 
Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI +                                                  
Sbjct: 694 LRENDYVIGV-------------------------------------------------- 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +L  ++  +L ++EKG+GKRT + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 704 ---DLLTEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L+++ G +IR  V+ +    RAT GV +   A+D +V ++ ++    I +E + 
Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEDVKVSTMAKVDAEVIKEEMDE 818

Query: 909 T 909
            
Sbjct: 819 A 819



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 94/254 (37%), Gaps = 17/254 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LG VKR  +  +   R  G     +V+++ D +  + + +   +++  + +G+     
Sbjct: 618 TRLGTVKRTDVKAFSNIRSNG--LKAIVLKENDELMSVSVTNGDQNIIIGTHMGYAVSFH 675

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   I         R+         +    +  V+  T+ G  +R K 
Sbjct: 676 EKDVRNMGRTAGGVRGI---------RLRENDYVIGVDLLTEDSEVLIITEKGYGKRTKA 726

Query: 663 SDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           S++  I   G   +K          +  + T   + DI+L T  G  +RF +SA+    G
Sbjct: 727 SEY-AIKGRGGKGIKTANITSKNGNLAGLTTVKGDEDIMLITNTGVIIRFNVSAV-SQTG 784

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R ++GVR I +A+  +V +MA V       +     +   S        +     +  ++
Sbjct: 785 RATLGVRVIRVAEDVKVSTMAKVDAEVIKEEMDEAGIISESPSIEDSELNESIQENDTSN 844

Query: 779 SSVEGNISEERCQE 792
           +S           E
Sbjct: 845 NSDNDTEGNNDLTE 858


>gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 814

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/896 (40%), Positives = 559/896 (62%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I +V + ++M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK  
Sbjct: 3   EDNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF PN+D    EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D CVA + NP+I ++ L +I+ GPDFPTGA ILG++GIK+AY TGRG + +R
Sbjct: 183 PHNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYILGKSGIKDAYQTGRGKVKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE    +RE+I+V+EIPYQVNK+ ++EKIA+LV++K+I  I+D+RDESDR+G R+V
Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ++A+++LN LY+YT L++ F +  +AL    P+   L  +++ ++  ++EVV R
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGIPQVLNLKELIEYYIDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + +  ++   ++           
Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q++AIL+++L RL+GL  D +  E   L   I   L IL
Sbjct: 412 ---------------FNLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETISYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +KD+    RR++I+    +++ E+ I +ED+++T+++ GY+KR+
Sbjct: 457 NSEENLIKLIISEMEEIKDKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTNDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+SLG VY  K + +P GS 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q+RG A+INIL+L  GERIT +M   E      +  +V  TK G +++ +  +F  I ++
Sbjct: 577 QSRGTAIINILNLESGERITEMMTLSELN---EDSQIVLQTKDGTIKKTEAENFTNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    +E +++++TK G  ++F    +R   GR + GVR I LA+
Sbjct: 634 GIIAISLKDGDKLISVRQIDKEEELIISTKKGMTIQFNSQDLRSM-GRIAQGVRAIKLAE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+SM I                                                   
Sbjct: 693 GDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K  E ++L V+E GFGK+TS  +F+  NR GKG++   V+  ++ G +V   PV+ ++
Sbjct: 702 --KGDETYLLVVTENGFGKKTSFNNFKNQNRGGKGVKCHKVT--DKTGKVVDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906
            I++VS  G +IR+ V +I I  R T GV + +     +R+VSV +    E  +E 
Sbjct: 758 DIMMVSLSGDMIRLSVRDISIMGRNTVGVKLKNLTEDGDRIVSVTKYSALEEEEED 813


>gi|111020669|ref|YP_703641.1| DNA gyrase subunit A [Rhodococcus jostii RHA1]
 gi|110820199|gb|ABG95483.1| DNA topoisomerase subunit A [Rhodococcus jostii RHA1]
          Length = 840

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/918 (38%), Positives = 520/918 (56%), Gaps = 94/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N     +  L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+ RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   D+ +  R GKG+      
Sbjct: 723 -------------------------YLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K  + G LV    VND+D++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 K--KRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRES--EIVDEAEST 909
           + R  +   E  D AES+
Sbjct: 816 IARNADEPDEPDDNAESS 833



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 13/235 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ + + R GG     + +R ED +    + S+   +L
Sbjct: 616 KTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSDDDLL 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G   +       +  P  R  + +  +  N  + + ++             Y++ 
Sbjct: 674 LVSAQGQSIRFSATDEAL-RPMGRATSGVQGMRFNGDDELLSLNVVR------EGTYLLV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + D+    R GK  + +    +    +       ++++   T  G  +R
Sbjct: 727 ATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGGGVIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                +R  AGR + GVR ++L +GD ++++A       + D+        + + 
Sbjct: 787 TAAKQVR-KAGRQTKGVRLMNLGEGDTLLAIARNADEPDEPDDNAESSGKGAKES 840


>gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27]
 gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27]
          Length = 805

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/887 (42%), Positives = 534/887 (60%), Gaps = 86/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK 
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMGKYHPHG+AAIYDAL RMAQ W+LR  LI+GQGNFGS+DGDPPAA+RYTE R
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      +L D+ KDTVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HN
Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  VA+I+NP I L+ +M  + GPDFPTG  +  + GIK AYATGRGS+ +R   
Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKLS-KKGIKEAYATGRGSLKVRAKV 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+  G R  +VVTEIPYQVNKA+++ +IA LV+ K+I DI  LRDESDRQG R+ IEL
Sbjct: 242 RVEE-KGQRPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+  V+LNQLY++T+LQ+ F+VN++A+   +P+  +L+ +++ ++  R+EVV RR+ 
Sbjct: 301 KRGANPQVVLNQLYKHTALQTSFTVNLLAIVDGEPKVLSLLDLMRHYLDHRKEVVRRRSL 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR  LM+R              
Sbjct: 361 FELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMER-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   
Sbjct: 407 ------------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           +RLL  +K +LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL 
Sbjct: 455 ARLLAEVKADLLRVKEKYGDARRTLITEFEETFNPEDLIEDEPMVITLTAQGFLKRLPLE 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ RGGKG      ++ED  T +F+   H  +L F++ G VY+ KV+ LP    QAR
Sbjct: 515 SYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + ++L L + E +  ++     +      ++VFAT+ G V+R  L ++  + ++G I
Sbjct: 575 GVHVKSLLPLAEDEEVAALLSVRGLD---QEGHLVFATERGLVKRTALKEYQNLGQAGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733
           A++L   D ++ V     E++ +L T+ GQ +RFP+  +R   GR++ GV G+   K  D
Sbjct: 632 AIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRA-TGRDTQGVIGVRFKKPED 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ +V   +                                                
Sbjct: 691 RVVSLVVVKPGEMVD--------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L+VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   + +
Sbjct: 706 ------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVST--KVGRLAALLKVRGGEDL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++S +G  IR PV EIR  SRAT GV + +  +D+ V S   + E 
Sbjct: 758 LVLSRRGLAIRTPVAEIRQYSRATAGVRVMNLPEDDEVASAFVVEEE 804



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 64/212 (30%), Gaps = 52/212 (24%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           + +        +    +  L S   +        +       E     +      +L  +
Sbjct: 494 EDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAGRTKEEDEATHVFVADAHDDLLLFT 553

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV----------------- 847
            +G   R   Y+     R  +G+    +  + E   + A+  V                 
Sbjct: 554 NRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEEVAALLSVRGLDQEGHLVFATERGL 613

Query: 848 ----------------------------------NDNDQIILVSDKGTLIRVPVNEIRIA 873
                                             +  D+ IL + +G  IR P+ E+R  
Sbjct: 614 VKRTALKEYQNLGQAGLIAIRLQEGDRLVGVALSDPEDEAILATQEGQAIRFPLEEVRAT 673

Query: 874 SRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            R T+GV+     K ++RVVS+  ++  E+VD
Sbjct: 674 GRDTQGVIGVRFKKPEDRVVSLVVVKPGEMVD 705


>gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
 gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus]
          Length = 862

 Score =  856 bits (2212), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/905 (42%), Positives = 567/905 (62%), Gaps = 69/905 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K IT + I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +G  WN+
Sbjct: 2   NDLAKEITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+Y+A+ RMAQ + +R  LI+GQGNFGSVDGDP AA R
Sbjct: 62  SYKKSARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ LL DL K+TVD+  NYDG+ Q P +L  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTEVRMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI +D+LM+ I GPDFP+ A+I    G+K AY TGRG I 
Sbjct: 182 IPPHNLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYRGLKEAYETGRGKIY 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  S IE      RE IV+ EIPYQ+NK+ +LEKIAELV+ KRI  I +LRDESD+ G 
Sbjct: 242 IRARSEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++K  A ++++LN LY  TSLQ  F +NMVAL+  +P+  +L  IL AFV  R  +
Sbjct: 302 RIVIDIKHDAISEIVLNNLYSLTSLQISFGINMVALHNGQPKTMSLKDILSAFVCHRRSI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR  + L KA +R HVL GL +A++N+D V+ +I+ + +   A  EL  + W +++I 
Sbjct: 362 ITRRIMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWESNNII 421

Query: 429 DLIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++   I           +  I  D   Y ++ Q +AILELRL +LT L  + +  E  ++
Sbjct: 422 NMRKKISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIEYENV 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMV 539
             +++  + +L + S L+G+I+QEL+S+K+E + PRRT I    + +++ E+ I + D+V
Sbjct: 482 LKKMENLICVLQNPSSLMGLIRQELVSIKEEYNDPRRTEISENIVSNIDLENLINQRDVV 541

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S+ GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y
Sbjct: 542 VTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIY 601

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+RLP  +  +RG+ +IN+L L+  ERIT I+P     +      V  AT  G V++
Sbjct: 602 WMKVYRLPKANKGSRGRPIINLLPLDTNERITVILPVQNYTTGHQ---VFMATSSGFVKK 658

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L +F +    G IA+ L++ DE++  +    +N+++L T  G+ VRF  + +R   GR
Sbjct: 659 TALMEFSRPRNVGIIALNLNNGDELIGADITNGDNEVMLFTAYGKVVRFQETQVRSM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRG+ L +GD+V+S+ I                                       
Sbjct: 718 SASGVRGVHLLQGDRVVSLII--------------------------------------- 738

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  ILTV+E GFGKRT+  ++ + +R+ +G+ +  V++ N  G
Sbjct: 739 --------------PKDQSSILTVTENGFGKRTNQSEYPLKSRAIQGVISIKVTERN--G 782

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +V    V+  DQI++V+D G L+R+ V+E+ I  R T+GV++  TA DE VV ++R+ E
Sbjct: 783 NVVGAVQVDQGDQIMIVTDSGRLVRIRVSEVNIIKRNTQGVMLIRTACDEHVVGLQRVVE 842

Query: 900 SEIVD 904
           S  ++
Sbjct: 843 SVEIE 847


>gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
 gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38]
          Length = 851

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/910 (38%), Positives = 547/910 (60%), Gaps = 89/910 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV     
Sbjct: 2   SEGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K +  +L D+ K+TVDF+ N+D + QEP V+  + P +L+NG  GIAVGMATN+
Sbjct: 122 TEARMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL EVVDG +A IDN DI++D L+  I+ PDFPTG +I G  G++ A+ TGRG IV+
Sbjct: 182 APHNLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIYGYEGVREAFKTGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +  RE I+VTEIPYQVNKA M++  A+LV +K+I  I+++RDESDR G RV
Sbjct: 242 RAKVGFEEVN-GREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V ELKR A  +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  FV  R +VVV
Sbjct: 301 VYELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQMLNLKDLIYHFVEHRHDVVV 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA +RAH+L GL IA  N+DEV++IIR S + + AR  L++R          
Sbjct: 361 RRAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q RAI+E+RL +LTGL +D +R E   +   I    ++
Sbjct: 411 ----------------FKLSEIQARAIVEMRLRQLTGLEQDKLRAEYEEIMKLITYLKEL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S+   + +IK EL  ++D+    RR++I     D+  ED I  E +V+T+SH GY+KR
Sbjct: 455 LASKEMRMQVIKDELAEIRDKYGDERRSQIEYSGGDVSIEDLIADESVVITISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y+ Q RGG G+     RD+DF+  LF+ + H  +++F+  G  Y  +V+ +P G+
Sbjct: 515 TSLSEYKTQNRGGVGQKSAGTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGT 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N++++   +++   +   +  D+    +  ++  TK G V++  L  + + 
Sbjct: 575 KASKGRAIQNLINIESDDKVKAFICTQDLKDQDYIKSHNLIMVTKQGQVKKTSLEKYSKP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ +   DE+L  +     + +L+  K G+ VRF     R   GR + GVRGI+
Sbjct: 635 RVNGVAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPM-GRTASGVRGIT 693

Query: 729 L-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  + D+VI +  V   D +  +                                     
Sbjct: 694 LADENDEVIGIVTVNKEDVNETQ------------------------------------- 716

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIGAL 841
                       IL V+E G+GKRT   +      +RI+NR GKG++  ++++  + GAL
Sbjct: 717 ------------ILVVTENGYGKRTKLVEEDGVDVYRITNRGGKGVKTLNITE--KTGAL 762

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI-RES 900
           +A+  V D+D +++++  G  IR+ V+++R+  RAT+GV + +   ++ + +V ++ RE 
Sbjct: 763 IAINNVTDDDDLMIINKSGLTIRMMVSDLRVMGRATQGVKLINIKGNDSIAAVTKVLRED 822

Query: 901 EIVDEAESTE 910
           E +   E+ E
Sbjct: 823 EEIVLDENGE 832



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 89/244 (36%), Gaps = 16/244 (6%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + V+  G VK+  L  Y   R  G   + + +++ D +    + +  + VL     G + 
Sbjct: 615 IMVTKQGQVKKTSLEKYSKPRVNG--VAAITIKEGDELLGAKLTNGSSQVLIAGKSGKMV 672

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +   +      P  R  + +  ++L         +    ++   N   ++  T++G  +R
Sbjct: 673 R---FEEEKTRPMGRTASGVRGITLADENDEVIGI-VTVNKEDVNETQILVVTENGYGKR 728

Query: 660 N--------KLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPI 710
                     +         G   + +  +   L      T ++D+++  K G  +R  +
Sbjct: 729 TKLVEEDGVDVYRITNRGGKGVKTLNITEKTGALIAINNVTDDDDLMIINKSGLTIRMMV 788

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +RV  GR + GV+ I++   D + ++  VL  D +           +     I    E
Sbjct: 789 SDLRVM-GRATQGVKLINIKGNDSIAAVTKVLREDEEIVLDENGEISDAENGTDIDSTEE 847

Query: 771 EITS 774
           E   
Sbjct: 848 ETQE 851


>gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
 gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii
           DSM 16973]
          Length = 863

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/908 (40%), Positives = 551/908 (60%), Gaps = 85/908 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM  +G  
Sbjct: 3   ENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+DG+ +EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNPDID + LM  I+ PDFPTGA I G  G+K+AY TG+G
Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIYGIQGVKDAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +VIR  + IE      ++IVVTEIPY VNKA ++E IA+LV+E +I  I+++ DES RQ
Sbjct: 243 RVVIRAKAEIESHES-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   TL   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLTLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT++ L KA++RAH+L GL IA  N+DEVV +IR S  P  A+R L +R      
Sbjct: 362 DVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  + +  E   L   I  
Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL +VK++    RRT I     +   ED    + +V+TVSHLG
Sbjct: 456 LQSILDDPELCKKVMKDELQAVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS ++ Q RGG G  G   R+EDF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTALSEFKEQARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G+  ++G+A+ N+L+++  + +   +     +DE+  N+ YVVFATK+G V++  L  
Sbjct: 576 PEGTKDSKGRAIQNMLNIDSDDSVNAFLRLKGLDDEAFLNSHYVVFATKNGVVKKTLLKA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+ +   DE+++V      N+++L  + G+ VRF   A+R   GR S GV
Sbjct: 636 YSRPRANGVNAINIVDGDEVVNVRLTNGSNELILANRNGRAVRFDEKAVRTM-GRVSTGV 694

Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L  G D+V+ M +V  AD                                      
Sbjct: 695 RGMRLDGGDDEVVGMVVVNEADK------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE G+GKR+S  D+R +NR GKG++   ++  ++ G LV+
Sbjct: 718 --------------ESVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVS 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D + +++++  G  IR+ V+ +R+  RAT+GV + +   K++ + SV ++  SE+
Sbjct: 762 IKNVTDENDLMIINKSGITIRLAVSNVRVMGRATQGVRLINLTKKNDVIASVCKVMSSEL 821

Query: 903 VDEAESTE 910
               ++ +
Sbjct: 822 EAADKNDD 829


>gi|126432620|ref|YP_001068311.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
 gi|126232420|gb|ABN95820.1| DNA gyrase subunit A [Mycobacterium sp. JLS]
          Length = 836

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/917 (37%), Positives = 519/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D     ++N     +  L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGS+ +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRIV    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPNERIAQVIQIKSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSRLTDFDSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDELLSLNVVRP------------------------------ 720

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++L  +  G+ KRTS  ++    R GKGI      
Sbjct: 721 -----------------------DTYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 RR--RGNLVGALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIA 815

Query: 894 VERIRESEIVDEAESTE 910
           + R  E+    +  +T+
Sbjct: 816 IARNAEAGDSTDEVNTD 832


>gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152]
 gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152]
          Length = 838

 Score =  856 bits (2211), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/890 (41%), Positives = 554/890 (62%), Gaps = 85/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++    Y
Sbjct: 3   EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD++ RMAQDWS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD   N+D + QEPVVL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G VA I+N DI++D LM+ +  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE I+VTEIPYQVNKA M++K A+LV EK+I  IA++RDESDR G R+V
Sbjct: 243 AKAVIEEVK-GRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA  RAH+L GL IA  N+DEV++IIR S N + AR  L++R           
Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E + + + I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK ELL +K++    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYQIIKDELLHIKEKYGDERRSTIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLDEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++ Q + +   +   +  +E   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEQDDSVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L    G+ +RF  +  R   GR + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D+VI M  V   +++                                         
Sbjct: 695 QHENDEVIGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKG+GKR+S  D+RI+NR GKG++  ++S+  + G LVA+  V+
Sbjct: 714 -----------ILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D++ +++++  G +IR+ V ++R+  RAT+GV + +   D+ + +V ++ 
Sbjct: 761 DSNDLMIINKSGLVIRMAVEDLRVMGRATQGVRLINIKDDDSIAAVAKVV 810



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 98/256 (38%), Gaps = 13/256 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +     +      +  +    V+  +  G VK+  L  Y   R  G   + + +++ D +
Sbjct: 593 SVKAFLVTQDLKNEEYINSHYVIMATKKGQVKKTSLEQYSRPRTNG--INAITIKEGDEL 650

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            +  + +  + V+   + G   +   +      P  R  + +  ++L         M   
Sbjct: 651 LEAKLTTGDSQVMLALASGKSIR---FEEAKTRPMGRTASGVRGITLQHENDEVIGMVAV 707

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-N 694
            D  S     ++  ++ G  +R+ L D+        G   + +  +   L       + N
Sbjct: 708 NDMESN----ILVVSEKGYGKRSSLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSN 763

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           D+++  K G  +R  +  +RV  GR + GVR I++   D + ++A V+H +   +E    
Sbjct: 764 DLMIINKSGLVIRMAVEDLRVM-GRATQGVRLINIKDDDSIAAVAKVVHEEEAEEESADE 822

Query: 755 MKHMSAQRRLISGDTE 770
            ++ +      S + E
Sbjct: 823 TENGTNIENNTSDNQE 838


>gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232]
 gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A
 gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232]
          Length = 828

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/891 (41%), Positives = 553/891 (62%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++++++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  +++  N  G L  +  V+  
Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G+RA  + +      L+ V   +  D II+ +  G  +R     
Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R+  GV      +D+RVV   RIR+++ V
Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + +   ++                 +N  V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIRDNQEVLVITENGFGKRTSA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +D+              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           R ++GV+ + L    ++++  +V   D+   E     ++  ++ +
Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826


>gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 871

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/899 (43%), Positives = 546/899 (60%), Gaps = 67/899 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+  NYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+  IDN DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV+EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L  R WN  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL++V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMIILASTERLMEVIREELIAVRDGFGDERRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT                                  
Sbjct: 606 LPLASRNARGKPIVNILPLEEGERITA--------------------------------- 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                             IL V+   ++  I + T  G   + P++    FA   + G+ 
Sbjct: 633 ------------------ILPVDQFCEDKFIFMATGDGTVKKTPLTQ---FANVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I      D D  +        +           T+         + 
Sbjct: 672 AVNLRDDDSLIGVDITT---GDSDIMLFSKAGKVVRFSEDKVRAMGRTAAGVRGMKLNDD 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   +  +LTV++ G+GKRT   ++ +  R+ +G+ +  VS  N  G +V   
Sbjct: 729 DQVVSLIVPANDGDVLTVTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI E +  D
Sbjct: 787 QVVEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDESVVGLQRIDELDETD 845



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 15/247 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    +  +   +  G VK+ PL+ +   R  G     V +RD+D +  + I +  + ++
Sbjct: 637 DQFCEDKFIFMATGDGTVKKTPLTQFANVRANG--LIAVNLRDDDSLIGVDITTGDSDIM 694

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS  G V +    ++      A   A +  + LN  +++ +++         N+  V+ 
Sbjct: 695 LFSKAGKVVRFSEDKVRAMGRTA---AGVRGMKLNDDDQVVSLI------VPANDGDVLT 745

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
            T++G  +R +LS++    R+ +  + +   D     +      + +++++ T  G  VR
Sbjct: 746 VTQNGYGKRTQLSEYPVKGRATQGVVSIKVSDRNGPVVGAVQVVEGDEMMMITDAGTLVR 805

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GRN+ GV  I  A+ + V+ +  +   D          + +S   +  S 
Sbjct: 806 TRVAEV-SQVGRNTQGVTLIRTAEDESVVGLQRIDELDETDLVEEENEESVSESEQETSE 864

Query: 768 DTEEITS 774
              + T 
Sbjct: 865 QNSDSTE 871


>gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093]
 gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093]
          Length = 827

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/899 (42%), Positives = 533/899 (59%), Gaps = 83/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M ++G+    KY
Sbjct: 6   NEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNKY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK A + GEV+ KYHPHG+ AIYDA+ RMAQDW++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 66  VKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  +L D+ K+TVDF+ N+DG+  EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 126 EARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++DNP+I LD LME I+GPDFPTG  ++ RTGI+ A+ TGRGSI +R
Sbjct: 186 PHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGG-VMSRTGIRQAFETGRGSIRLR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+       IVVTEIPYQVNK ++++  A LVR KRI DIA++RDESDRQG R+V
Sbjct: 245 AKVRFEERGRG-TSIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELKRGA  +++LNQLY+YT LQS FSVN +A+    P    L   L  F+  R +VV R
Sbjct: 304 FELKRGAHPELVLNQLYKYTQLQSTFSVNNLAIVDRSPRVLPLKDALALFLDHRADVVRR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR+RAH+L G  IA+  LDEV+ +IR S +  TAR  L+             
Sbjct: 364 RTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAE----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ +A+L++RL RLTGL R+ ++ E   L  EI     IL
Sbjct: 413 ---------------FGLTEVQAQAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              + L  +IK+EL  VK      RRT+I +   D+  ED I  E MVVT++  GY+KR 
Sbjct: 458 GDANELRKVIKRELREVKKNFADARRTQISDNDSDISKEDLIAEEHMVVTLTRGGYIKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ YRAQ RGG+G +    +++D  + L + +TH  +LFF+  G VY+EK++ LP    
Sbjct: 518 PLAAYRAQARGGRGVNAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVYREKIYDLPEAER 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG  L NIL L + ER+ T++   +        Y VFAT+ G +++  + ++  +N S
Sbjct: 578 AARGSHLRNILPLAEDERVATVLSVRDFN---AEGYFVFATRQGMIKKTAIREYGNLNAS 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++SV        ++L T+ GQ +RFP + +R   GR + GVRGI L  
Sbjct: 635 GLIAINLIEGDELVSVRHGWDGAHVVLATREGQAIRFPEADVRD-TGRATQGVRGIRLKP 693

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D ++S++++                                                  
Sbjct: 694 NDALVSLSVI-------------------------------------------------A 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
              L +  +L V+E G+GKRT   D+ +  R G+G+    V+   + G LV++  V  ++
Sbjct: 705 GEHLGDAELLAVTECGYGKRTPLSDYPVQGRGGQGVITLRVTP--KTGPLVSLDYVRGDE 762

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++S+ G LIR  V E+    R ++GV I      +RVVSV  +   E +  A  T+
Sbjct: 763 ELLVLSEGGVLIRTRVGEVSRYGRPSQGVTIMRLGDGDRVVSVMVMLAEETLGRAADTD 821


>gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
 gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098]
          Length = 851

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 529/892 (59%), Gaps = 85/892 (9%)

Query: 11  EEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           E+  GI    VSI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI++   ++   +N
Sbjct: 3   EQNSGIQQPQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELANSYN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD  AA 
Sbjct: 63  RPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ + A   L D+ K+TVDFRPNYD + QEP VL  + PN+L+NG  GIAVGMAT
Sbjct: 123 RYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE+ D    ++D+P   +  LME+++GPDFPT   +    G+ +AY TGRG++
Sbjct: 183 NIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGKGLSDAYHTGRGTV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG   +E+     + IV+ EIP+ +NK++++EKIA LV + +I  I+DLRDESDR+G 
Sbjct: 243 KVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDESDRKGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI+LKRG   D+++N LY+YT L++ F +NM+A+   +P    L   L  FV  R EV
Sbjct: 303 RVVIDLKRGTIPDIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALSCFVDHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RRT+Y L KA  RAH+L GL IA+ ++DEVV +IR S +P+ AR  LMQR        
Sbjct: 363 VIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSEVQ RAIL++RL RLTGL R+++  E   L  +I+   
Sbjct: 415 ------------------FELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547
            +L +   L   +K+E+  +++   TPRRT ++      ++ ED I  E++V+T+S  GY
Sbjct: 457 SVLENPEVLRSELKREIREIRETFATPRRTEVLTDALGGIDIEDLIPDEEVVITLSRRGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  Y+ Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P
Sbjct: 517 MKRTSLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  A+G  + N+L L +GE +TT++   E      + Y +F TK G V+R+  S + +
Sbjct: 577 EGSRTAKGVHINNLLPLEEGEWVTTVLAVREFA---EDKYFLFVTKRGMVKRSSASLYAR 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +SG +A+ L   DE++ V    +++ I+L T  G  +RF    +R   GR + GV+GI
Sbjct: 634 CRKSGLMAVGLREDDELVVVRPIREDSHIVLATADGYSIRFACKDVRPM-GRVATGVKGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V++  I+   D   +                                      
Sbjct: 693 ALRRQDVVVAGVILKENDQTTE-------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+++S  GFGKRT    +R+ +R GKGI    V+  ++ G +V   PV
Sbjct: 715 ------------IMSISANGFGKRTRVDLYRLQSRGGKGIINFKVT--SKTGPVVGAMPV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            DND +I+++    ++R+ V ++R   RAT GV++    +   VV  +R+ E
Sbjct: 761 RDNDGLIMLTSANKVVRIGVEDVRSKGRATMGVMLVRLDEGAHVVGFDRVDE 812


>gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289]
 gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A]
 gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289]
          Length = 860

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/908 (39%), Positives = 552/908 (60%), Gaps = 86/908 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE +  + ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL G +P   +L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT++ L KA++RAH+L  L  A  N+DEVV +IR S  P  A++ L +R      
Sbjct: 362 DVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                   E+Q++AI+++RL++LTGL  D +  E + L   IK+
Sbjct: 416 --------------------FGFDELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKD 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL +  R   ++K EL  VK++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILDNPERCREVMKAELQEVKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   A+G+A+ N+LSL  G+ +   +     +D++  ++ +VVFATK G V++  L  
Sbjct: 576 PEGDKNAKGRAIQNMLSLEAGDAVNAFLRIRGLDDDAFLDSHFVVFATKQGIVKKTSLRA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V     +N++++  + G+  RF  S IR   GR S GV
Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESNIRTM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +   D+V+ M +V                                         
Sbjct: 695 RGMRLDEDGQDEVVGMIVVNDPV------------------------------------- 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LV
Sbjct: 718 --------------NETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNITE--KTGKLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           A+  V D + +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++  SE
Sbjct: 762 AIKNVTDANDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 821

Query: 902 IVDEAEST 909
           +  + E  
Sbjct: 822 METQVEEE 829


>gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
 gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6]
          Length = 876

 Score =  856 bits (2210), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/910 (40%), Positives = 542/910 (59%), Gaps = 92/910 (10%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +++D++    I  V +  +M++SY+ YA++VI  RA+PD+RDG+KPV RRIL+ M+++  
Sbjct: 1   MATDDKVFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNN 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + KCARI G+ MGKYHPHG+++IY A+  MAQDW++R  L++G GNFGSVDGD  
Sbjct: 61  GPDKPHRKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K +  ++ DL KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           MATNIPTHNL EV+   V +I+N      D +LD +M+I++GPDFPTG  ILG  GI+ A
Sbjct: 181 MATNIPTHNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTRGIEEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +RG+S IE     + +I++TE+PY VNKA ++EKIAELVR+K+I  I  + 
Sbjct: 241 YRTGRGKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGIS 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D S R+G R+VI+++R A+A+VILN+LY++T LQ  F V M+AL   +P+   L+ IL+ 
Sbjct: 301 DHSSREGMRIVIDVRRDANANVILNKLYKHTQLQDTFGVIMLALVDNQPKVLNLLQILEY 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +EEVV RRT+Y LNKA++RAH+L GL  A+  +DEV+  IR S     A+  L+ +
Sbjct: 361 YLKHQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAK 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        +E Q +AI+++RL  LTGL RD ++ E + L
Sbjct: 421 --------------------------FGFTEAQAQAIVDMRLRTLTGLERDKLQGEFDEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE   IL+ R  LLG+I+ E+  + D+    RRTRI   + D+  ED I  ++ V+
Sbjct: 455 QKKIKEYQAILADRKVLLGVIRDEIQIISDKFGDERRTRIGHDVYDITTEDLIPNDNNVL 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SHLGY+KR+    + AQ RGGKG  G    + D++ DLF+  +H  ++FF++LG  Y 
Sbjct: 515 TMSHLGYIKRMSPENFHAQNRGGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYT 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARG A+IN+L L  GE+IT I+P  E +    N Y+  ATK G V++ 
Sbjct: 575 LKAYEIPEASRTARGTAIINLLQLMPGEKITAIIPVSEFK---ENQYLFMATKKGMVKKT 631

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +  F  + +SG  A+ L   D+++ V+    + D+ L T  G  +RF    +R   GR 
Sbjct: 632 PVPAFRNMRKSGLAAITLRDDDDLIEVKYTDGKQDVFLATANGMSIRFNEQDVRA-TGRG 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GVRGI L   D+VI M                                          
Sbjct: 691 SMGVRGIWLDGEDEVIGM------------------------------------------ 708

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                      +L+ + +++L  SE G GKRT   +FRI  R GKGI     ++    G 
Sbjct: 709 -----------QLQAQGKYLLFSSENGIGKRTLFEEFRIQKRGGKGILCYKPNER--TGK 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV V  VND D+++L++  G +IR+ V+++ +  R+  GV +      + V S+ ++R+ 
Sbjct: 756 LVGVKAVNDEDELMLITVSGIVIRISVDDVSVIGRSAMGVKLMDVM--DSVASIAKVRKD 813

Query: 901 EIVDEAESTE 910
           +  +  E ++
Sbjct: 814 DSDEGEEDSD 823


>gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302]
 gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302]
          Length = 867

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/907 (40%), Positives = 543/907 (59%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGS+DGD PA
Sbjct: 63  SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNL EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G  G++ AY TGRG
Sbjct: 183 ATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  DES RQ
Sbjct: 243 RIVMRAKAEIESDES-HDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R      
Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  D +  E   L  +I  
Sbjct: 416 --------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL  VKD+    RRT I     +   ED    + +V+TVSH+G
Sbjct: 456 FQQILDDPELCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +  Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSEFHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L++   + I  I+      DE+  N+ YV+FATK+G V++  L  
Sbjct: 576 PEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDETFNNSHYVIFATKNGTVKKTSLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR + GV
Sbjct: 636 YSRPRANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGV 694

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L    D+V+ M  V  A+                                      
Sbjct: 695 RGMRLDGSDDEVVGMVTVNEAET------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE+G+GKR+   D+R++NR GKG++   +++  + G LV+
Sbjct: 718 --------------ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVS 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D + +++++  G +IR+ V ++R+  RAT+GV + +   K++ + SV ++  SE+
Sbjct: 762 IKNVTDENDLMIINKSGIVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EATVEEE 828



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 104/267 (38%), Gaps = 15/267 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +       V+  +  G VK+  L  Y   R  G     +   DE     L   +    ++
Sbjct: 611 ETFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIADGDEVVDVRL--TNGRNELI 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      A G   +  + L+  +     M    +        V+ 
Sbjct: 669 MANRNGRAVRFNENTIRTMGRTATG---VRGMRLDGSDDEVVGMVTVNEA---ETETVMV 722

Query: 651 ATKHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ G  +R+++ D+   NR       +A+   +   ++S++  T END+++  K G  +
Sbjct: 723 VSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTG-RLVSIKNVTDENDLMIINKSGIVI 781

Query: 707 RFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           R  ++ +RV  GR + GVR I+L  K D + S+  V+ ++ +           + +   I
Sbjct: 782 RLAVADVRVM-GRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWANKSEEI 840

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQE 792
             DT+   S   + +   +  ++  +E
Sbjct: 841 KKDTQAEASESAEDAPFVDFEDDNKEE 867


>gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
 gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans
           ATCC 11563]
          Length = 859

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/894 (40%), Positives = 536/894 (59%), Gaps = 83/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++      I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEIKEQFPQREISQEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH ++ D+ KDTVDF PNYDG  +EP VL AR+PN+LVNG  GIAVGM TN
Sbjct: 123 YTEARMSKIAHEMVRDMNKDTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     ++ N D   + LME + GPDFPTG +++G++GI+ AY TG+G+I+
Sbjct: 183 IPTHNLSEVIGAIKILMQNADATTNELMEALPGPDFPTGGIVIGKSGIRKAYETGKGTII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  S  +E+I+V EIPY VNKA ++E+IAEL R+KR+  I  +RDES R+G R
Sbjct: 243 VRAKLDIETLSSGKERIIVHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIE ++ ASA VI+N LY+YT LQ+ F +NMVA+    P   +L  IL+ ++  +EEV+
Sbjct: 303 VVIECRKDASASVIVNNLYKYTQLQTNFGINMVAIVNGVPRTLSLKEILQNYLLHQEEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+ +  NKA  RAH+L GL IA+ ++DE+V I+R S + + A+   ++          
Sbjct: 363 RRRSIFEKNKAEARAHILEGLQIALDHIDEIVNILRTSRSGDEAKARFIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q++AIL++RL RLTGL R+ I  E   L  +I     
Sbjct: 413 ----------------DYKLSDKQSQAILDMRLVRLTGLEREKIDKEHAELMAQIDYLNQ 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           +L S +    II  EL+ ++ +    RRT ++ G +   +DED I   +++VT++  GY+
Sbjct: 457 VLGSETMRYQIIYDELIEIESKFGDDRRTELMVGEIHNIDDEDLIEESNVIVTLTQNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +RAQ RGG G  G+ M D+DFV  +   STH SVLFF++ G V+  K + +P 
Sbjct: 517 KRIDDVEFRAQNRGGTGVKGMSMNDDDFVETMLSTSTHDSVLFFTNTGRVFHSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  ++N+L+L Q E +  ++     E +    +++F TK+G V+R   SD+  I
Sbjct: 577 FGRAAKGIPVVNLLNLQQDETVQAMINVTPIEDAEVKEHLLFVTKNGTVKRTNASDYFNI 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+KL   DE++ V   + +++I++ ++ G  V F  + +R   GR + GVRGI 
Sbjct: 637 RNNGLIALKLAEGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSM-GRTATGVRGIR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GDQV+ M+++                                               
Sbjct: 696 LNDGDQVVGMSVLGP--------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +L V+EKG+GK+T + ++ I NR GKG++  +V++ N  G LV +  V+
Sbjct: 711 --------DDNVLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKN--GILVGLTTVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             + I+L++++G  IR     I    RAT+GV +   A+D  V ++ ++   E 
Sbjct: 761 GEEDIMLMTNQGIAIRFHAKNISQTGRATQGVRLIRLAEDSYVSAIAKVEAIEE 814



 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 14/222 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              + N I+  T+ G   R      R    R   GV+G+S+   D V +M      D+  
Sbjct: 500 LIEESNVIVTLTQNGYIKRIDDVEFRA-QNRGGTGVKGMSMNDDDFVETMLSTSTHDSVL 558

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE--QFILT 802
                 R+ + K         +     + +L N    E   +      ++  E  + +L 
Sbjct: 559 FFTNTGRVFHSKGYEIPEFGRAAKGIPVVNLLNLQQDETVQAMINVTPIEDAEVKEHLLF 618

Query: 803 VSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           V++ G  KRT++ D+  I N    G+ A  +++      LV V   + +D II+ S  G 
Sbjct: 619 VTKNGTVKRTNASDYFNIRN---NGLIALKLAEG---DELVKVVLTSGDDNIIIASRDGY 672

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +      +R   R   GV        ++VV +  +   + V
Sbjct: 673 AVSFQETNVRSMGRTATGVRGIRLNDGDQVVGMSVLGPDDNV 714


>gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811]
 gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811]
          Length = 851

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/893 (40%), Positives = 532/893 (59%), Gaps = 84/893 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLAEVISALHILMNNPEATTMDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A++  + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLIHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++DE++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 ---------------DGYLLSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALITDLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T++  GY+
Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++    +     + Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKD-YLFFVTRLGVVKRTAVSEFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       I++ TK G  VRF    +R+  GR + GVRGI 
Sbjct: 636 RTNGLKALTLRDDDEVLSVQITDGTQSIMIATKDGYSVRFTEEDVRIM-GRAAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD VI   +V   D                                           
Sbjct: 695 LRDGDLVIGSDVVSLNDN------------------------------------------ 712

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  G L  +  V+
Sbjct: 713 -----------VLVITEKGYGKQTPVSEYPIKGRGGKGIKTANITEKN--GTLAGMIIVH 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++ I++ + +G +IR     +    RAT GV +       +V ++ ++   E
Sbjct: 760 GDEDIMVTTTQGVMIRFTTESVSQTGRATLGVRLIRLEDGAKVATLAKVEHEE 812



 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 11/213 (5%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-----DYDE 750
           I+  T+ G   R P +  +    R   GV+GI++   D V  M      D      +  +
Sbjct: 507 IVTLTRNGYIKRVPQAEFKA-QNRGGRGVQGINVNDEDFVDQMIATSTHDTLLFFTNKGK 565

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                 +   +    +     +  LK +   +         E    + ++  V+  G  K
Sbjct: 566 VYRMKGYEVPEYGRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKDYLFFVTRLGVVK 625

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           RT+  +F  SN    G++A  +        +++V   +    I++ +  G  +R    ++
Sbjct: 626 RTAVSEF--SNIRTNGLKALTLRD---DDEVLSVQITDGTQSIMIATKDGYSVRFTEEDV 680

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           RI  RA  GV        + V+  + +  ++ V
Sbjct: 681 RIMGRAAAGVRGIRLRDGDLVIGSDVVSLNDNV 713


>gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
 gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3]
 gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153]
          Length = 825

 Score =  855 bits (2209), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/899 (40%), Positives = 539/899 (59%), Gaps = 86/899 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ K+T+D++ NYD +  EP+VL AR P++LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG VI+GR+GI +AY +G+G+
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V+R  ++IE+    RE+I+VTEIP+ VNKA +++KIAEL R+K I  I  +RDESDR G
Sbjct: 242 VVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E+
Sbjct: 302 MRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQED 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L+KA  RAH+L GL IA+ ++DE+V IIR S + + A+  L+ R       
Sbjct: 362 VVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L ++I + 
Sbjct: 415 -------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H G
Sbjct: 456 KDILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S +R Q RGG+G  G+ ++D+DF+  L   STH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L L++GE+I  ++  PE         + F TK G V+R  + +F 
Sbjct: 576 PEYSRIAKGLPIINLLQLDKGEKIQAMINVPE---GHEEGNLFFITKMGVVKRTSVEEFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  SG IA+ L   DE+ +V T   + +I++ T LG    F  S +RV  GR++ GVRG
Sbjct: 633 NIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHLGYAASFKESDVRVM-GRSAAGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   ++                                             
Sbjct: 692 INLRENDYVIGSEVLKPG------------------------------------------ 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SE G+GKRT+  ++ I  R GKGI  T V K N  G L  +  
Sbjct: 710 -----------AEVLVISENGYGKRTAVSEYPIKGRGGKGILTTKVGKKN--GRLAGMTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V+    I+L++  G +IR    ++    RAT GV +    + + V S+  +   +   E
Sbjct: 757 VDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVPNDDDDSE 815


>gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
 gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198]
          Length = 881

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 393/930 (42%), Positives = 559/930 (60%), Gaps = 83/930 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    SD    + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSV
Sbjct: 59  NVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +A
Sbjct: 179 GIAVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAIINGRRGILDA 238

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG I IR  + IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ L
Sbjct: 239 YRTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGL 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G R+V+E+KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ 
Sbjct: 299 RDESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIS 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+  R EVV RRT Y L KARDRAH+L  LA+A+AN+D V+ +IR +PNP  A+  L+ 
Sbjct: 359 AFIRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIA 418

Query: 420 RSWNASDIKDLIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGR 470
           + W+   +  +++   DS+              DG  YL+E Q +AIL+LRL +LTGL  
Sbjct: 419 QPWDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + + +E   L ++I E L IL S  RL+ +I++EL ++KD+ + PRRT I E   D+  E
Sbjct: 479 EKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADINIE 538

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E++VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L
Sbjct: 539 DLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 598

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSS G +Y  KV++LP  S  ARG+ +IN+L L Q ERIT I+P               
Sbjct: 599 CFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILP--------------- 643

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
                                               V    +   + + T  G   + P+
Sbjct: 644 ------------------------------------VREYEEGKFVFMATASGTVKKTPL 667

Query: 711 SAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
               R      S G+  ++L +GD++I    V   D+  +  +        +        
Sbjct: 668 QDFSRPR----SAGIIAVNLNEGDELIG---VDLTDSTNEVMLFSADGKVVRFAEDCVRP 720

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
              T+         +  +     +   +  ILTV+E G+GKRT+  ++   NR+ +G+ +
Sbjct: 721 MGRTATGVRGMKLSDDDKVVSLIIPRGDGDILTVTENGYGKRTAQSEYPTKNRATQGVIS 780

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             VS+ N  G +V    V + DQI+++++ GTL+R  V+E+ I  R T+GV +  T + E
Sbjct: 781 IKVSERN--GKVVGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEGE 838

Query: 890 RVVSVERIRE----------SEIVDEAEST 909
            VV ++R+ +          +E++DE  S 
Sbjct: 839 LVVGLQRVEDEDDALDDDEVNEVIDEELSE 868



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/424 (14%), Positives = 139/424 (32%), Gaps = 31/424 (7%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +  +  H+L      +  + E +  I+   N           +   
Sbjct: 477 EHEKLLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDPRRTEITENTADIN 536

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483
            +     + +  +    G      L++ + +       +       D I   L +   + 
Sbjct: 537 IEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDT 596

Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
                       + +        G   + ++++       R T I+              
Sbjct: 597 ILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERITAILPVRE-------YEE 649

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              V   +  G VK+ PL  +   R  G     +   DE    DL    +   V+ FS+ 
Sbjct: 650 GKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDL--TDSTNEVMLFSAD 707

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V +     +      A G   +  + L+  +++ +++          +  ++  T++G
Sbjct: 708 GKVVRFAEDCVRPMGRTATG---VRGMKLSDDDKVVSLI------IPRGDGDILTVTENG 758

Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R   S++   NR+ +  + +       +++      + + I++ T  G  VR  +S 
Sbjct: 759 YGKRTAQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSE 818

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +    GRN+ GV  I   +G+ V+ +  V   D   D+                 D  + 
Sbjct: 819 V-SIVGRNTQGVTLIRTTEGELVVGLQRVEDEDDALDDDEVNEVIDEELSEAPDSDLADD 877

Query: 773 TSLK 776
            + +
Sbjct: 878 ANEE 881


>gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
 gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559]
          Length = 848

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 548/891 (61%), Gaps = 82/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  + K
Sbjct: 5   EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 65  SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +++K A  ++ D+ KDTVD   N+D + +EP VL  R P +L+NG  GIAVGMATN+P H
Sbjct: 125 KMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDG  A ID+ DID++ LME ++ PDFPTG  I G  G++ A+ TGRG +V+RG 
Sbjct: 185 NLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMRGK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E+    RE +VVTEIPYQVNKA M++K A+LV EK+I  I+ +RDESDR G R+V  
Sbjct: 245 AVFEEVQ-GRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVYI 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A  +++LN LY+YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVRRT
Sbjct: 304 LKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVRRT 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +LM+R             
Sbjct: 364 KYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMER------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q +AI+E+RL +LTGL +D +R+E + L   I++  DIL  
Sbjct: 411 -------------FKLTEIQAKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDK 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + R + IIK EL  +KD+    RR+ I     DM  ED I  E +V+T+SH GY+KR PL
Sbjct: 458 KERRMQIIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPL 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y+ Q RGG G+     R+EDF+ D+F+ + H  ++FF+  G  +  +V+ +P GS  +
Sbjct: 518 TEYKTQNRGGVGQKASTTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTS 577

Query: 614 RGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +   +
Sbjct: 578 KGRAIQNLINIEPDDKVKAFICTQDLKDEDYINSHYVIMATKKGQVKKTSLEQYSRPRIN 637

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ +   DE+L  +  T +++I+L  K G+C+RF  S  R   GR++ GVRGI LA 
Sbjct: 638 GINAITIKEDDELLEAKLTTGDSEIMLAVKSGKCIRFEESKTRPM-GRSASGVRGIRLAD 696

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                                                             E         
Sbjct: 697 --------------------------------------------------EKTDEVVGMV 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            +   +  IL VSE G+GKR+S  D+R++NR GKG++   V+  ++ G LVA+  V D+D
Sbjct: 707 VVNNNDSDILVVSENGYGKRSSLEDYRMTNRGGKGVKTISVT--SKTGELVAIKNVTDDD 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +++++  G  IR+ V  +R+  RAT+GV + +   D+ + +V ++++ E 
Sbjct: 765 DLMIINKSGIAIRLSVENLRVMGRATQGVRLINLKGDDAIAAVAKVKQDED 815



 Score = 82.1 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/210 (17%), Positives = 86/210 (40%), Gaps = 22/210 (10%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760
           RF ++ I+      +  +  + L      + D++ S    ++    D  + +   +    
Sbjct: 410 RFKLTEIQ------AKAIVEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQ 463

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
             +    + ++    +  S +E    +   +++   E+ ++T+S  G+ KRT   +++  
Sbjct: 464 IIKDELQEIKDKYGDERRSVIEYAGGDMSIEDMIPNEKVVITISHAGYIKRTPLTEYKTQ 523

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKG 879
           NR G G +A+     + +  +     V  N Q ++  + KG    + V EI   S+ +KG
Sbjct: 524 NRGGVGQKASTTRNEDFLEDM----FVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTSKG 579

Query: 880 ---VVIFSTAKDERVVSVERIRESEIVDEA 906
                + +   D++V     I   ++ DE 
Sbjct: 580 RAIQNLINIEPDDKVK--AFICTQDLKDED 607


>gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 862

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/881 (42%), Positives = 535/881 (60%), Gaps = 62/881 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R  LIEG GNFGSVD DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRLQ  + + LL D+  DTVDF  N+DGS QEP+VL AR P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NPD+    L++II GPDFPTG  ILGR+GI +AY TGRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQILGRSGIHDAYMTGRGSITM 243

Query: 251 RGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE        DRE I++T++PYQ NKAA++E+IA+LV EKRI  I+D+RDESDR 
Sbjct: 244 RGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDESDRD 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A   V+LN +Y+ T +Q  F  NM+AL   +P+  T+   L+ F+ FR 
Sbjct: 304 GMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGEPQLLTIKDFLQVFLDFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RRT+Y L KA +R H+L GL IA+ NLD V+++IR + +  +A+ EL+Q       
Sbjct: 364 ETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQE------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS VQ  AIL+++L RLT L  + I  E   L ++I +
Sbjct: 418 --------------------FGLSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIAD 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ R R+  II+ EL  +K    TPRRT IV    ++ D D I  E  ++ ++  G
Sbjct: 458 LKDILARRERIEAIIEDELTQIKTIHATPRRTEIVHDDGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++   ++D+D V        H  VLFFS  G VY    +++
Sbjct: 518 YIKRMPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ARG  ++ +L + + E+IT+I+   E      ++++V  T++G +++  LS F 
Sbjct: 578 PSSSRTARGIPIVQMLPIPKDEKITSIVAVSEFR---EDVFLVMLTRNGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D++  V    +E+ I+L T+ G  + F      +R   GR + GV
Sbjct: 635 NIRTNGLIAISLGDGDQLRWVRLTREEDSIILGTRKGMAIHFQADNQQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L KGD++ISM ++                        +  T  I     D  V  N
Sbjct: 694 KAMKLKKGDELISMDVLP-----------------------AQVTAGIGDAAEDEDVLEN 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            +EE  +E   +  +IL ++  G+GKR     FR+  R+G G+RA      ++   L ++
Sbjct: 731 ETEELTEEETTEGPWILAITNGGYGKRVPISQFRLQRRAGMGVRAIKF--KSKTDCLASL 788

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
             VN  D++++VS++G +IR  V+ I + SRA  GV +   
Sbjct: 789 HVVNAEDELMIVSNRGIIIRQAVDAISMQSRAATGVRVQRL 829


>gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX]
 gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX]
          Length = 848

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/928 (39%), Positives = 520/928 (56%), Gaps = 100/928 (10%)

Query: 1   MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+   + +  +     I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+
Sbjct: 1   MTDVNTTPEAPDNTGGRIEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ Y KCAR+ G+VMG YHPHG++AIY+ L R+AQ W++R+ L++G GNFG
Sbjct: 61  AMYDSGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S   DP AA RYTEC+L   A  +L D+ K+TVDFRPNYDG  QEPVVL AR+PN+LVNG
Sbjct: 121 SPGNDPAAAMRYTECKLAPLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMATNIP HNL EV +G    +D+PD   + L++     I+GPDFPT   I+GR
Sbjct: 181 SSGIAVGMATNIPPHNLREVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIVGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI+  Y TGRGSI +R V  IE+    R+ +VVTE+PYQVN   +  KIAELV+E +I 
Sbjct: 241 RGIEETYRTGRGSITMRAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKIS 300

Query: 295 DIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD++DES  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    
Sbjct: 301 GIADVKDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLR 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +++ +VA + EV+VRRT+YLL KA +RAH+L  L  A+  +DEV+ +IR S + + A
Sbjct: 361 LDQMIRHWVAHQIEVIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +  LM+                           + + +VQ RAIL+++L +L  L R  +
Sbjct: 421 KNGLME--------------------------LLAIDDVQARAILDMQLRKLAALERQQL 454

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E + L  +I +  +IL S  R   II+ EL  + ++    RRT IV    DM  ED I
Sbjct: 455 TSEYDELMAQIADYNEILESPERQRRIIRDELAEIVEKYGDDRRTEIVPYEGDMRMEDFI 514

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  GY KR  L  YRAQ+RGGKG  G  ++ +D V   F+ +TH  +LFF+
Sbjct: 515 AEEDIVVTITRGGYAKRTRLDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHHWILFFT 574

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + LP  +  +RG  + N++     E I  ++   + +      Y+V AT+
Sbjct: 575 NKGRVYRTKAYELPELARDSRGHHVANLVPFLPDEEIAQVLALRDYD---AAPYLVLATR 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
            G V++ KL++F     SG IA+ L   DE+++       +D+LL +   Q +RFP S  
Sbjct: 632 SGLVKKTKLAEFDSARSSGIIAINLREDDELIAARLVYPTDDLLLISSNAQAIRFPASDD 691

Query: 713 -IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GV G+  A+GD ++SM ++   +   D                      
Sbjct: 692 SLRPM-GRATSGVIGMRFAEGDYLLSMDVIREGEGATD---------------------- 728

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       +L  +E G+ KRT +  + +  R GKG+    
Sbjct: 729 ----------------------------VLVATEGGYAKRTPADQYPVQKRGGKGVLTAR 760

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + +    G LV    V+  D+I+ ++  G +IR    EI+ + RAT GV +   +K   V
Sbjct: 761 IVE--SRGKLVGALMVDPEDEILAITSNGGVIRTKCAEIKQSQRATMGVRLMHLSKGNHV 818

Query: 892 VSVERIRESEIVD---------EAESTE 910
           V++ R  E    D         +AE TE
Sbjct: 819 VAIARNTEGMGDDAENGAHGSEDAEDTE 846


>gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
 gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845]
          Length = 859

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/908 (39%), Positives = 551/908 (60%), Gaps = 86/908 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE +  + ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RR ++ L KA++RAH+L  L  A  N+DEVVRIIR S  P  A+R L +R      
Sbjct: 362 DVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                   E+Q+RAI+++RL++LTGL  D +  E   L   IK+
Sbjct: 416 --------------------FEFDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKD 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL++  R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILNNPERCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+LSL  G+ +   +     +D+   ++ YVVFATK G V++  L  
Sbjct: 576 PEGDKNSKGRAIQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V      N++++  + G+  RF  S IR   GR S GV
Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +   D+V+ M +V                                         
Sbjct: 695 RGMRLDEDGQDEVVGMIVVNDPV------------------------------------- 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LV
Sbjct: 718 --------------NETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           A+  V D++ +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++  SE
Sbjct: 762 AIKNVTDDNDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 821

Query: 902 IVDEAEST 909
           +  + E  
Sbjct: 822 MESQVEDD 829


>gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222]
 gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222]
          Length = 890

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/893 (43%), Positives = 542/893 (60%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V   + E  I + T  G   +  +     FA   + G+ 
Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I    D + D  +        +           T+           
Sbjct: 672 AVNLRDDDSLIGVDI---TDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGMKLPED 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 103/260 (39%), Gaps = 15/260 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E  +   +  G VK+  L  +   R  G     V +RD+D +  + I   ++ ++ F
Sbjct: 639 FSNEKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITDGNSDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G V +    ++      A   + +  + L + +++ +++         N   ++  T
Sbjct: 697 SKSGKVVRFNEDKVRPMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L+++    R+ +  + +   D     +      + +++++ T  G  VR  
Sbjct: 748 QNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTR 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +    GRN+ GV  I  A+ + V+ +  +   +          +  +A         
Sbjct: 808 VAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEAEIVEGEETEEANADAVNAETAV 866

Query: 770 EEITSLKNDSSVEGNISEER 789
              +S +  S   G+ S+  
Sbjct: 867 VSESSEEQASDASGSESDSE 886


>gi|226362909|ref|YP_002780689.1| DNA gyrase subunit A [Rhodococcus opacus B4]
 gi|226241396|dbj|BAH51744.1| DNA gyrase subunit A [Rhodococcus opacus B4]
          Length = 840

 Score =  855 bits (2208), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/918 (38%), Positives = 520/918 (56%), Gaps = 94/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGPGHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFTPNYDGRTQEPSVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     ++N     +  L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALENWEADEESTLTAVMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +RGV  IE+ +  R  IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IHDAYTTGRGSVRMRGVVEIEEDAKGRTTIVITELPYQVNPDNLITSIAEQVRDAKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SDIHDESSDRAGMRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGCNMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+ RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRLYVAHQVEVIRRRTEYLLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRRIVRDELKEIVDKHGDDRRTRIIAADGDVADEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVSHFFVSSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI +++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPDERIQSVIQIKTYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSDDDLLLVSAQGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNGDDELLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   D+ +  R GKG+      
Sbjct: 723 -------------------------YLLVATSGGYSKRTGMEDYPVQGRGGKGVLTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K  + G LV    VND+D++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 K--KRGTLVGALIVNDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDNLLA 815

Query: 894 VERIRES--EIVDEAEST 909
           + R  +   E  D AES+
Sbjct: 816 IARNADEPDETDDNAESS 833



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 91/235 (38%), Gaps = 13/235 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ + + R GG     + +R ED +    + S+   +L
Sbjct: 616 KTYEDAPYLVLATRNGLVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSDDDLL 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G   +       +  P  R  + +  +  N  + + ++             Y++ 
Sbjct: 674 LVSAQGQSIRFSATDEAL-RPMGRATSGVQGMRFNGDDELLSLNVVR------EGTYLLV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + D+    R GK  + +    +    +       ++++   T  G  +R
Sbjct: 727 ATSGGYSKRTGMEDYPVQGRGGKGVLTIQYDKKRGTLVGALIVNDDDELYAITSGGGVIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                +R  AGR + GVR ++L +GD ++++A       + D+        + + 
Sbjct: 787 TAAKQVR-KAGRQTKGVRLMNLGEGDNLLAIARNADEPDETDDNAESSGKGAKES 840


>gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis
           K-10]
 gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 839

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/917 (37%), Positives = 516/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN     +  L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  +  +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D ++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 723 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRESEIVDEAESTE 910
           + R  E    +  + ++
Sbjct: 816 IARNAEEAADEAVDESD 832



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G VK+  L+ + + R GG     + +RD D +    + S    +L  
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGG--IVAINLRDNDELVGAVLCSAEDDLLLV 675

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G   +       +  P  R  + +  +  N  + + ++             Y++ AT
Sbjct: 676 SANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDYLLSLNVVR------EGTYLLVAT 728

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  + ++    R GK  + +        ++      +++++   T  G  +R  
Sbjct: 729 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTA 788

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
              +R  AGR + GVR ++L +GD ++++A      AD           S  
Sbjct: 789 AGQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEEAADEAVDESDGAAGSDG 839


>gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
 gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745]
          Length = 823

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/895 (42%), Positives = 537/895 (60%), Gaps = 84/895 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ S  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++   + E    ++ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +RF    +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDEGDRLISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++ + +                                       
Sbjct: 691 RGIKLNAGDVVVGAGVLNNDE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV
Sbjct: 712 -----------SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIR 898
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIP 813



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 10/219 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  TK G   R   +  R    +   GV G+   + D V  +  V   +   
Sbjct: 501 LIADEEMVITLTKQGYIKRMNANVYRN-QHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLL 559

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 R   +K                       +V  +++     E   ++  +  V+
Sbjct: 560 FFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERVHEDVNLFMVT 619

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E G  KRT+  ++R   R   G+ A ++ + +    L++V     N  I++ +  G  IR
Sbjct: 620 EFGVVKRTAIEEYRNIRR--SGLNAINLDEGDR---LISVNVTTGNQDILIGTKLGIAIR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +++R+  RA  GV        + VV    +   E  
Sbjct: 675 FSEHDVRLMKRAAHGVRGIKLNAGDVVVGAGVLNNDESE 713


>gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 835

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/907 (40%), Positives = 546/907 (60%), Gaps = 84/907 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++I    E     I   +I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +
Sbjct: 5   KNIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKE 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG++ N  Y K ARI G+V+GKYHPHG++A+Y A+ RM QD+SLR  +I+GQGNFGS+DG
Sbjct: 65  MGLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDG 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+      +L DL K+TVDF PNYDGS +EPV+L  + P++L+NG  GI
Sbjct: 125 DFAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HN+ EV D  V +ID+ +I +  +++ I+GPDFPTGA+ILG++GIK+   
Sbjct: 185 AVGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIILGKSGIKDYME 244

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRGS+ IR  + IE+    RE I+V EIPYQVNKA ++  IA+LV++K+I  IADLRDE
Sbjct: 245 KGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDE 304

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIE+KR A+  V+LNQLY++T +Q  F V M+AL   +P+   +  IL   +
Sbjct: 305 SDRDGIRIVIEIKRDANVQVVLNQLYKHTQMQLSFGVIMLALVNNRPKVMNVKEILIHHI 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R+ +++RRTK+ L KA  R H+L GL IA+ N+D V++II+ S + + AR  LM +  
Sbjct: 365 EHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK-- 422

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + L+++QT AILE+++ +LTGL R +I +E   L  
Sbjct: 423 ------------------------LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIR 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I++   +L+   ++L IIK E L +K +    RRT+I     D   ED I  E++ VT+
Sbjct: 459 LIEKLRSVLADPKKVLDIIKNEALDIKRKYGDKRRTQIQAAEADFNIEDLIQEEEVAVTM 518

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+KR+PL  Y+AQ RGG+G + +  R+EDFV +LFI S+H+ +LFF++ G +Y  +
Sbjct: 519 SHAGYIKRIPLDTYKAQHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMR 578

Query: 603 VWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDES-SWNNLYVVFATKHGNVRRN 660
           ++ +P G+  ++GKA++N+L L    E+IT  +P          + Y++  T++G +++ 
Sbjct: 579 IYEIPEGARTSKGKAIVNLLQLQGTEEKITAAIPIRSFNPEYTKDEYLLMCTRNGIIKKI 638

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  FI   + G IA+KL+  D +  V+   +  ++++ TK G  +RF  S IRV  GR 
Sbjct: 639 ALDKFINPRKRGIIAIKLEDGDILTEVKAINKNPEVVIATKKGSSIRFKESDIRVI-GRA 697

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             GV+GI L KGD+VI M +    D                                   
Sbjct: 698 GRGVKGIELKKGDEVIGMEVFSPDDVF--------------------------------- 724

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                               L++SE G+GKRT    +R+  R+G G+    +S+ N  G 
Sbjct: 725 --------------------LSISENGYGKRTKVGKYRLQKRAGHGVINMQMSERN--GN 762

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ +   ND +++++++  G  IR+ VN I +  R T+GV +      ++V ++  + + 
Sbjct: 763 MIGIKKANDGEEVMIITQNGITIRLRVNSISVIGRNTQGVRLVRLDAGDKVAAIACVVKD 822

Query: 901 EIVDEAE 907
           E  +E +
Sbjct: 823 ENSEEPQ 829


>gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
 gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32]
          Length = 890

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/893 (43%), Positives = 542/893 (60%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V   + E  I + T  G   +  +     FA   + G+ 
Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I    D + D  +        +           T+           
Sbjct: 672 AVNLRDDDSLIGVDI---TDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGMKLPED 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 98/248 (39%), Gaps = 15/248 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E  +   +  G VK+  L  +   R  G     V +RD+D +  + I   ++ ++ F
Sbjct: 639 FSNEKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITDGNSDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G V +    ++      A   + +  + L + +++ +++         N   ++  T
Sbjct: 697 SKSGKVVRFNEDKVRPMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L+++    R+ +  + +   D     +      + +++++ T  G  VR  
Sbjct: 748 QNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTR 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +    GRN+ GV  I  A+ + V+ +  +   +          +  +A         
Sbjct: 808 VAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEAEIVEGEETEEANADAVNAETAD 866

Query: 770 EEITSLKN 777
              +S + 
Sbjct: 867 VSESSEEQ 874


>gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
 gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205]
          Length = 878

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/907 (40%), Positives = 548/907 (60%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  LI+GQGNFGSVDGD PA
Sbjct: 63  SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL K+TVD   N+D + QEP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+PTHNLGEV+DGC A IDNPDID D LM+ I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIYGIQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+R  + IE +S + ++IV+TEIPY VNK  ++  IA+L +E R+  IA++ DES RQ
Sbjct: 243 RIVVRATAEIE-SSENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVLLNKLFKLTALQSSFSVNCIALVNGRPRLLSLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R      
Sbjct: 362 DVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  + + NE N L   I  
Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL+       ++K EL  VK++    RRT I     +   ED    + +V+TVSHLG
Sbjct: 456 LNQILNDPELCKKVMKDELNEVKEKYGDARRTMIKPDDHEFNPEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +R Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSEFREQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L++   +++   +      D    NN YVVFATK+G V++  L  
Sbjct: 576 PEGDRNSKGRAIQNLLNIESDDQVNAFLRLRGLNDAEFINNHYVVFATKNGTVKKTCLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR S GV
Sbjct: 636 YSRPRANGVIAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTM-GRTSTGV 694

Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L +GD  V+ M +V   +                                      
Sbjct: 695 RGMRLDEGDDAVVGMIVVNDPEK------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE+G+GKR+   D+R++ R GKG++  +++  ++ G LVA
Sbjct: 718 --------------ETVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNIT--DKTGRLVA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV ++  SE+
Sbjct: 762 IKNVTDDNDLMIINQSGIVIRLAVADCRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EASVEEE 828


>gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 872

 Score =  854 bits (2207), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/907 (41%), Positives = 543/907 (59%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+PTHNL EV+DGC A IDNPDI+L+ LM+ I+ PDFPTG  I G  G+K+AY TGRG
Sbjct: 183 ATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            I++R  + IE      ++IVVTEIPY VNK  ++E IA LV+E ++  IA+  DES RQ
Sbjct: 243 RIILRAKAEIESDES-HDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVNGRPRLLSLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRTK+ L KA+DRAH+L GL IA  N+DEVV IIR S  P  A+  L +R      
Sbjct: 362 DVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  + +  E + L   I  
Sbjct: 416 --------------------FDLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +ILS       ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLG
Sbjct: 456 LENILSDPELCKKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +R Q RGG G  G   R+ DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSDFREQARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G+  ++G+A+ N+L++   + I  I+     +DE   N+ YVVFATK+G V++  L  
Sbjct: 576 PEGTKDSKGRAIQNLLNIESDDAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ +   DE++ V     EN++++  + G+ VRF    IRV  GR + GV
Sbjct: 636 YSRPRTNGVIAINIAEGDEVVDVRLTNGENELIMANRNGRAVRFDERTIRVM-GRTATGV 694

Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L  GD  VI M +V                                          
Sbjct: 695 RGMRLDDGDDAVIGMIVVDDPI-------------------------------------- 716

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE G+GKR+S  D+R +NR GKG++   ++  ++ G LVA
Sbjct: 717 -------------NETVMVVSENGYGKRSSVEDYRKTNRGGKGVKTLSIT--DKTGRLVA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D++ +++++  G  IR+ V E R+  RAT+GV + +   K++ + SV R   SE+
Sbjct: 762 IKNVTDDNDLMIINKSGITIRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EASFEED 828


>gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 832

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/897 (41%), Positives = 553/897 (61%), Gaps = 86/897 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +V I DEM+N Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M QMG+  +K + K 
Sbjct: 13  NLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPFRKS 72

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQD+S R + + GQGNFGSVDGD  AA RYTE R
Sbjct: 73  ARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYTEAR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + +  +L D+ K+TVDF  N+DGS QEPVVL +R+P++LVNG  GIAVGMATNIP HN
Sbjct: 133 MSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG +A ID+PDI +D LM  I+GPDFPT  VILG++GI+ AY TGRG I IR   
Sbjct: 193 LGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVILGKSGIREAYETGRGRIKIRSKV 252

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313
            ++  +  ++QIV++EIPY VNKA +++KIAELV++KR+  I D+RDE+D + G R+V+E
Sbjct: 253 AVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIRIVVE 312

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR  +A ++LNQLY++T LQ  + V  +AL   +P+  +L  IL  +VA ++E++VRRT
Sbjct: 313 LKRDTNATIVLNQLYKHTQLQDTYGVINLALVDGQPKVLSLKQILHYYVAHQKEIIVRRT 372

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L KA  RAH+L G  IA+ N+DEV++IIR S + + A+  LM R             
Sbjct: 373 KFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDR------------- 419

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+++Q +AIL++RL RLTGL R+ I  E   L  +I E   IL+ 
Sbjct: 420 -------------FALTDIQAQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILAD 466

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              +LGIIK EL  +KD+    RRT     + D + ED I  E++VVT++H+GYVKR+  
Sbjct: 467 EKLVLGIIKDELTEIKDKYGDDRRTSFDIDVEDFDVEDLIKEEEVVVTMTHVGYVKRIAA 526

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGGKG S +  R+ DF+  +F  STH  +LFF++ G  Y+ K + +P+G   +
Sbjct: 527 DTYRAQNRGGKGISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTS 586

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG A++NIL L+  E ITT++     E    + Y V AT+HG +++  ++D+    ++G 
Sbjct: 587 RGTAIVNILQLDPDESITTMIQVKTFE---ADKYFVMATRHGLIKKTAMTDYESSRKNGI 643

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + L   DE++ V+      D+++ T LG  +RF +  +    GR S+GVRGI L   D
Sbjct: 644 NGINLRDGDELIKVQISDDTEDVVMGTHLGYAIRFKVRDVNA-TGRMSMGVRGIGLRADD 702

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ M +++                                                   
Sbjct: 703 HVVGMDLLI--------------------------------------------------- 711

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  +L V+EKG+GKRTS+  +R+  R GKGI+    +K  + G LV    + D  +I
Sbjct: 712 --ADNNVLCVAEKGYGKRTSADQYRVQKRGGKGIQTYKCTK--KTGNLVGFSVLEDGGEI 767

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++++ G +I++  ++I    R+T+GV +     DER+ ++ +++  E +D+ +  +
Sbjct: 768 MMINNDGIVIKLKGDDISQIGRSTQGVRLMKLKGDERIATICKVQNEEPLDDVDIED 824


>gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
 gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941]
          Length = 852

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/903 (41%), Positives = 547/903 (60%), Gaps = 91/903 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I   SI DE+++S+L+YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G++ N+
Sbjct: 3   DTFSGNIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEV+GKYHPHG+AA+YD L R+AQD+S+R  L++GQGNFGSVDGDP AA R
Sbjct: 63  PYRKSATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+  DTV+F PN+D S +EP VL AR+PN+LVNG  GIAVGMAT 
Sbjct: 123 YTEARLTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATK 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  VA+I++P++D + L   I+GPDFPTG +++G  GI+ A  TGRGS+ 
Sbjct: 183 IPPHNLGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTRGIREAIRTGRGSVR 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +H E+  G+R QIVVTE+PYQVNKA +L+KIAELV++++I DIADLRDESDR G R
Sbjct: 243 VRAKAHTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A   V+LN L+++T +Q  F VN+VAL    P+  +    L+ ++A + EVV
Sbjct: 303 IVIELKREAVPKVVLNNLFKHTQMQQSFGVNLVALVDGVPKTLSYKEALRHYIAHQFEVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L +AR RAH+L GL IA++NLDEVV  IR S N ETARR L++R         
Sbjct: 363 TRRTRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKR--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL+LRL RLT L R  +  +   L  +I+    
Sbjct: 414 -----------------FRLSERQAQAILDLRLQRLTALERRKVEQDHRDLVEKIEYLEG 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           +L+  S++ GII++ELL +K      RRT I      + E ED I  E+MV+++SH GY+
Sbjct: 457 VLADESKVYGIIREELLEIKAAYADERRTAITAQEGAEFEVEDLIAEEEMVISISHEGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K VP+  +R Q RGG G +G+ +++ D++  LFI +TH  +LFF++ G VY+ KV +LP 
Sbjct: 517 KSVPIGSFRKQGRGGVGVAGMELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPR 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G+ + N+L L  GERI  ++   + +      Y++FAT+ G V++    D+   
Sbjct: 577 MGRAAKGRHVANLLPLAPGERIAAVISTRDFD---EAEYLLFATRRGMVKKTPFRDYNTP 633

Query: 669 -NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G IA+KL   DE+++V   + E++++  T+ G+ +RF    +R   GR + GV+GI
Sbjct: 634 LKNEGIIAIKLAGGDELIAVRHASDEDEVVFVTRDGKGLRFRQGDVRPM-GRATAGVKGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++SM +V    AD                                        
Sbjct: 693 TLKGDDALLSMDVVSDEAAD---------------------------------------- 712

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +  V+EKGFGKRT+  +FR   R G+G+ A  V+   E G +  V  V
Sbjct: 713 ------------LFMVTEKGFGKRTAISEFRPQGRGGQGVIAMKVN--GERGKIAGVQVV 758

Query: 848 NDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR----ESEI 902
                ++++VS+ GT IR+  + +    RA +GV + +  + + V ++ ++     E   
Sbjct: 759 RPGLHELVIVSNMGTTIRIDSDSVPRQGRAAQGVRVMNLREGDSVSALAKVVSSRGEPGE 818

Query: 903 VDE 905
            DE
Sbjct: 819 PDE 821


>gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1]
 gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 825

 Score =  854 bits (2206), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/892 (40%), Positives = 538/892 (60%), Gaps = 86/892 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDG+KPV RRIL+GM ++GV  
Sbjct: 2   DNQGQDRRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +LI+G GNFGSVDGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ K+T+D++ NYD +  EP+VL AR P++LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG VI+GR+GI +AY +G+G+
Sbjct: 182 TNIPPHNLSEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIMGRSGILHAYESGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V+R  ++IE+    RE+I+VTEIP+ VNKA +++KIAEL R+K I  I  +RDESDR G
Sbjct: 242 VVVRAKTNIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +E+
Sbjct: 302 MRITIDIRRDASASVVLNNLFKETQMQTNFGMNMVAIVNGAPHFLTLKQMLQYYLDHQED 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L+KA  RAH+L GL IA+ ++DE+V IIR S + + A+  L+ R       
Sbjct: 362 VVRRRTKFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L ++I + 
Sbjct: 415 -------------------FELDDKQAQAILDMRLVRLTGLERDKVEQEYQDLLVKIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H G
Sbjct: 456 KDILAKPERIDHIIYTELLDIQKRFGDDRRTEITASEVVSIEDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S +R Q RGG+G  G+ ++D+DF+  L   STH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPVSEFRTQNRGGRGIKGMGVQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L L++GE+I  ++  PE      +  + F TK G V+R  + +F 
Sbjct: 576 PEYSRTAKGLPIINLLQLDKGEKIQAMINVPE---GHEDGNLFFITKMGVVKRTSVEEFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  SG IA+ L   DE+ +V T   + +I++ T +G    F  S +RV  GR++ GVRG
Sbjct: 633 NIRNSGLIALTLRDGDELSNVLTTDGKQNIIIGTHMGYAASFKESDVRVM-GRSAAGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D V+   ++                                             
Sbjct: 692 INLRENDYVVGSEVLKPG------------------------------------------ 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SE G+GKRT+  ++ I  R GKGI  T + K N  G L  +  
Sbjct: 710 -----------AEVLVISENGYGKRTAVSEYPIKGRGGKGILTTKLGKKN--GPLAGMTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V+    I+L++  G +IR    ++    RAT GV +    + + V S+  + 
Sbjct: 757 VDGTTDIMLITTDGIMIRFKTEDVSQTGRATMGVRLIKLGEGDSVASLTAVP 808


>gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
 gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4]
          Length = 986

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/883 (40%), Positives = 540/883 (61%), Gaps = 87/883 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +++EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +  ++ + K A
Sbjct: 132 LKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSA 191

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG+++IY+A+ RMAQD+S+RL LI+G GNFGS+DGDP AA RYTE RL
Sbjct: 192 WTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRL 251

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG  GIAVGMATN+P HNL
Sbjct: 252 THAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNL 311

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV      +IDNP+  L+ LM  + GPDFPTG +I+G  GIK+AY TGRG++ IR   H
Sbjct: 312 QEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGTDGIKDAYKTGRGTLTIRSKVH 371

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           IE      R+++V+TEIPYQVNK+ + E+IA+ V EK+I  I+D+RDES+R+G R+VI+L
Sbjct: 372 IENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVIDL 431

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+GA   V+LN LY+ T LQ+ FSV  +AL    P   +L  +++ ++  +++VV RRTK
Sbjct: 432 KQGAVPQVVLNNLYKRTQLQTSFSVIDIALVDGVPRTLSLHDMIRYYIKHQQDVVTRRTK 491

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L +A+ R H+L GL IAV N+DEVV IIR S +   A+  + +R              
Sbjct: 492 FDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSER-------------- 537

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         + ++Q  AIL++RL RLTGL RD++  +++ L  +I    D+L + 
Sbjct: 538 ------------FGIDDIQGEAILQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNP 585

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++L +IK+EL+ + +   +PRRT+I      + + ED I  EDMV+TV+H  Y+KR+P+
Sbjct: 586 EKMLEVIKEELMQIAERYASPRRTKISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPV 645

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YRAQ+RGGKG  G+ ++D DFV DLF+ STH  VLFF++ G VY+ KV  LP+GS  +
Sbjct: 646 ATYRAQKRGGKGVQGLSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTS 705

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG AL+N+L L + E  T ++   +     +N Y+VFATK G V++  ++++ +  R G 
Sbjct: 706 RGSALVNVLPLAEDEHPTAVITTRDFP---DNQYLVFATKQGMVKKTAIAEYDKSRRDGL 762

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+++V    + N I+L T  G+ + F    +R    RN+ GV+GISL    
Sbjct: 763 IAINLKDGDELVNVRRVCEGNRIILCTSAGKAIMFSEEDVRP-TSRNTSGVKGISLKNNA 821

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++ M I                                                     
Sbjct: 822 YMLGMEISNGKGD----------------------------------------------- 834

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L ++E G+GKRT   ++ + +R G+G+    ++  ++ GALVA   V    ++
Sbjct: 835 ------LLVITENGYGKRTPISEYSLQHRGGQGVTTIAMT--SKKGALVACRVVGPQHEL 886

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +++S++G +IRV   +I  + RAT+GV I + +  + V ++ R
Sbjct: 887 MIMSEEGVMIRVKSMDISSSGRATQGVKIMNLSSTDHVSAMAR 929



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 73/285 (25%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLA 730
           + +D+ DE++ +   ++++      K     RF I  I+         R   G+      
Sbjct: 509 IAVDNIDEVVHIIRSSKDD---AEAKSRMSERFGIDDIQGEAILQMRLRRLTGL------ 559

Query: 731 KGDQVISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             D++ +    +        D      K +   +  +    E   S +            
Sbjct: 560 ARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYASPRRTKISTNEAQIL 619

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++TV+   + KR     +R   R GKG++   +   + +  L   F  +
Sbjct: 620 DVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQGLSLKDNDFVEDL---FVAS 676

Query: 849 DNDQIILVSDKGTLIRVPVNEIRI---ASR------------------------------ 875
            +D ++  ++KG + R+ V+E+ +    SR                              
Sbjct: 677 THDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDEHPTAVITTRDFPDNQY 736

Query: 876 ---ATK------------------GVVIFSTAKDERVVSVERIRE 899
              ATK                  G++  +    + +V+V R+ E
Sbjct: 737 LVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVCE 781



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 101/269 (37%), Gaps = 17/269 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G VK+  ++ Y   RR G     + ++D D + ++  V     ++  
Sbjct: 731 FPDNQYLVFATKQGMVKKTAIAEYDKSRRDG--LIAINLKDGDELVNVRRVCEGNRIILC 788

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +S G         +    P +R  + +  +SL     +  +      E S     ++  T
Sbjct: 789 TSAGKAIMFSEEDVR---PTSRNTSGVKGISLKNNAYMLGM------EISNGKGDLLVIT 839

Query: 653 KHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++G  +R  +S++   +R G+    IAM       +++      ++++++ ++ G  +R 
Sbjct: 840 ENGYGKRTPISEYSLQHRGGQGVTTIAMTSKKGA-LVACRVVGPQHELMIMSEEGVMIRV 898

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               I   +GR + GV+ ++L+  D V +MA ++        +       S      +  
Sbjct: 899 KSMDISS-SGRATQGVKIMNLSSTDHVSAMARMVAKKKSSHAQAADKNQPSLPLAFATTP 957

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE 797
             +      D    G   E     L   E
Sbjct: 958 ASDADPADADEVNIGGEEEFDENLLDDDE 986


>gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 549/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824]
          Length = 829

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/899 (39%), Positives = 542/899 (60%), Gaps = 86/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  V I+ EM+  Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   NEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++Y AL R+AQD++LR  +++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  ++ D+GK+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG   +IDNP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG I +R
Sbjct: 183 PHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE     +++I++TEIPYQVNKA ++E IA+LV++KRIV I+DLRDESDR G R+V
Sbjct: 243 AKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+K+ A++++ILNQLY++T LQ  F +NM+AL   +PE   L  IL+ ++ F+E+V+ R
Sbjct: 303 IEIKKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA+ ++DEV+ +IR S   + A+  LM +           
Sbjct: 363 RTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL+L+L RLTGL R+ I +E N L   I E   IL
Sbjct: 412 ---------------FGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  +++L II+ EL  +K +    R+T I     D++ ED I  E++V+T++H GY+KR+
Sbjct: 457 ADENKILAIIRDELNEIKAKYGDERKTAIERAENDIDIEDLIQEENVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +Q+RGG+G   +  +++DFV ++FI STH ++LFF++ G +YK K +++P    
Sbjct: 517 NADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L L+  E+I  ++   E +      ++V  TK G +++  +  +  I +S
Sbjct: 577 AAKGTNVVNLLQLDPNEKIQAVISIKEFD---EESFLVMCTKKGIIKKTVVGMYKNIRKS 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  DE++SV     ++DI++ T  G  +RF    +R   GRN++GV+GI+L +
Sbjct: 634 GLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPL-GRNALGVKGITLKE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+ M +                                                   
Sbjct: 693 DDFVVGMEVPNQESDVLVVSENGFGKR--------------------------------- 719

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                               T   +++  +R GKG+    VS  ++ G LV V  V D D
Sbjct: 720 --------------------THVGEYKCQHRGGKGLITYKVS--DKTGKLVGVRMVEDGD 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++L+++    IR+ V++I   SR   GV +     DE+V+++ +I + +     +S E
Sbjct: 758 ELMLINNL-HSIRINVSDISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSEE 815


>gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.]
          Length = 848

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/902 (39%), Positives = 554/902 (61%), Gaps = 85/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + +  ++I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++    Y
Sbjct: 3   DGEKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD++ RMAQ+WS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD R N+D + QEP VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G +A I+N +I++D LM+ I  PDFPTG +I G  G+++A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIYGYDGVRDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + +E+    RE I+VTEIPYQVNKA M++K AELV +K+I  I+++RDESDR G R+V
Sbjct: 243 AKAIVEEVK-GRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA  N+DEV+  IR S N + AR +L+ R           
Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E +++ + I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK+EL  +KD+    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYDIIKEELAHIKDKYGDERRSIIEYAGGDMRIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEPDDKVKAFLVTQDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L    G+ +RF  +  R   GR + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALASGKSIRFEEAKTRPM-GRTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D+VI M  V   +++                                         
Sbjct: 695 QHENDEVIGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKGFGKR+   D+R++NR GKG++  ++S+  + G LVA+  V+
Sbjct: 714 -----------ILVVSEKGFGKRSKLEDYRVTNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D++ +++++  G  IR+ V ++R+  RAT+GV + +    + + +V ++   E V+E   
Sbjct: 761 DSNDLMIINKSGLTIRMAVEDLRVMGRATQGVRLINIKDSDSIAAVAKVAHEEDVEEDLE 820

Query: 909 TE 910
            E
Sbjct: 821 GE 822



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 13/253 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+  L  Y   R  G   + + +++ D + +  + +  + V+
Sbjct: 606 EEYINSHYVIMATKKGQVKKTSLEQYSRPRTNG--INAITIKEGDELLEAKLTTGDSQVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              + G   +   +      P  R  + +  ++L         M    D  S     ++ 
Sbjct: 664 LALASGKSIR---FEEAKTRPMGRTASGVRGITLQHENDEVIGMVAVNDMESN----ILV 716

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVR 707
            ++ G  +R+KL D+        G   + +  +   L       + ND+++  K G  +R
Sbjct: 717 VSEKGFGKRSKLEDYRVTNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINKSGLTIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +RV  GR + GVR I++   D + ++A V H +   ++     +         + 
Sbjct: 777 MAVEDLRVM-GRATQGVRLINIKDSDSIAAVAKVAHEEDVEEDLEGETEAGIEIENDSNE 835

Query: 768 DTEEITSLKNDSS 780
           +         ++ 
Sbjct: 836 NDSNENDSSENNE 848


>gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
 gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056]
          Length = 842

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 551/906 (60%), Gaps = 89/906 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ ++++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIQNKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD-- 904
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++      D  
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEEDII 821

Query: 905 -EAEST 909
            E + T
Sbjct: 822 AEEDDT 827


>gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735]
 gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735]
          Length = 867

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/907 (40%), Positives = 543/907 (59%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG+A++Y AL RM QDW++R  L++GQGNFGS+DGD PA
Sbjct: 63  SDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNL EV+DGC A IDNPDI+LD LM+ I+ PDFPTGA I G  G++ AY TGRG
Sbjct: 183 ATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  DES RQ
Sbjct: 243 RIVMRAKAEIESDES-HDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNCIALVKGRPRLLSLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L +R      
Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEER------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  D +  E   L  +I  
Sbjct: 416 --------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL  VKD+    RRT I     +   ED    + +V+TVSH+G
Sbjct: 456 FQQILDDPELCKKVMKDELNEVKDKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +  Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSEFHEQARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L++   + I  I+      DE   N+ YV+FATK+G V++  L  
Sbjct: 576 PEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR + GV
Sbjct: 636 YSRPRANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTM-GRTATGV 694

Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L  G D+V+ M  V  A+                                      
Sbjct: 695 RGMRLDGGDDEVVGMVTVNEAET------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE+G+GKR+   D+R++NR GKG++   +++  + G LV+
Sbjct: 718 --------------ETVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVS 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D + +++++  G +IR+ V ++R+  RAT+GV + +   K++ + SV ++  SE+
Sbjct: 762 IKNVTDENDLMIINKSGIVIRLVVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EATVEEE 828



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 104/267 (38%), Gaps = 15/267 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +       V+  +  G VK+  L  Y   R  G     +   DE     L   +    ++
Sbjct: 611 EIFNNSHYVIFATKNGTVKKTSLEAYSRPRANGVIAINIADGDEVVDVRL--TNGRNELI 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      A G   +  + L+ G+     M    +        V+ 
Sbjct: 669 MANRNGRAVRFNENTIRTMGRTATG---VRGMRLDGGDDEVVGMVTVNEA---ETETVMV 722

Query: 651 ATKHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ G  +R+++ D+   NR       +A+   +   ++S++  T END+++  K G  +
Sbjct: 723 VSEQGYGKRSQVEDYRVTNRGGKGVKTLAITEKTG-RLVSIKNVTDENDLMIINKSGIVI 781

Query: 707 RFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           R  ++ +RV  GR + GVR I+L  K D + S+  V+ ++ +           + +   I
Sbjct: 782 RLVVADVRVM-GRATQGVRLINLAKKNDVIASVCKVMSSELEATVEEESRAQWANKSEEI 840

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQE 792
             DT+   S   +     +  ++  +E
Sbjct: 841 KKDTQAEASESAEDEPLVDFEDDNKEE 867


>gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
 gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112]
 gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3]
 gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri MM4-1A]
          Length = 834

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/910 (39%), Positives = 546/910 (60%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +         IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MAEQDMP------NRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV
Sbjct: 55  NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K A  +L D+ KDTVDF  NYDG+ +EP VL AR+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++G   ++++PDI  + LM+ I GPDFPTG V++G++GI+ A
Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+I++R    IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ 
Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ 
Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM  
Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELM-- 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R+ I +E   L
Sbjct: 413 ------------------------NNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539
              I +  DIL+ R R+  II  EL+ ++      RRT +    + ++EDED I  ED++
Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++H GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY
Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P     A+G  +IN+L +N  E+I+ ++    + +  ++ Y+ F TK G V+R
Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETND-DDKYLFFTTKLGTVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +++F  I  +G  A+ L   DE++ VE  +++  +++ T  G  + F  S +R   GR
Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRGI L   D VI  A +                                      
Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLN------------------------------------- 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +L +SE GFGK+TS+ ++ I  R G G++  +V+  N  G
Sbjct: 710 ----------------SDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--G 751

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LV +  VN ++ I+LV+D+G +IR  +  +    R+  GV +       RV ++ ++ +
Sbjct: 752 PLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKVDK 811

Query: 900 SEIVDEAEST 909
               +  E+T
Sbjct: 812 EVDEETEEAT 821


>gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae]
          Length = 822

 Score =  854 bits (2205), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/900 (40%), Positives = 554/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGM TNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++ G +  +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKEELDEVKRKFGDQRRTELMVGEVWSLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+    + S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEGESIQTIINVESERS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    ++ DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +++                                                 
Sbjct: 693 EGDTVVGASVITD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +  +L ++EKG+GKRT + ++    R GKG++  +V++ N  G L  +  V  +
Sbjct: 706 ------QDEVLIITEKGYGKRTVATEYPTKGRGGKGMKTANVAEKN--GPLSGLLTVKGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  V  I    R+T GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTTVAAAEKEEVGTENE 817


>gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833]
 gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833]
          Length = 834

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 518/917 (56%), Gaps = 92/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE            I  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTEVNTPPGPP-ADRIEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   ++ Y K +RI G+VMG YHPHG+A+IYD + R+AQ WSLR  L++GQGNFGS 
Sbjct: 60  FEGGYRPDRGYFKSSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE R+   A  +L D+ KDTVDF+PNYDG  +EPVVL +R+PN+LVNG  
Sbjct: 120 GNDPAAAMRYTESRMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E  +     +++P++  + L+    E I+GPDFPTGA+I+GR G
Sbjct: 180 GIAVGMATNIPPHNLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIVGRRG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI++R V  +E+ +  R+ +VVTE+PY VN   +   IAELVRE +I  I
Sbjct: 240 IEEAYRTGRGSIIMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LKR A   V+LN LY++T LQ+ F  NM+AL    P    L 
Sbjct: 300 ADVRDESSSRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQTTFGANMIALVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ ++  + +VVVRRT++LL KA +RAH+L GL  A+  +DEV+ +IR SP+   A+ 
Sbjct: 360 QFVRHYIRHQIDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQT 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + EVQ +AIL+++L +L  L R  I++
Sbjct: 420 GLMA--------------------------LLEIDEVQAQAILDMQLRKLAALERQQIQD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E + L  +I +  DIL S  R   ++ +EL  +  +    RRT+I     DM +ED I  
Sbjct: 454 EYDGLMAQIADYNDILGSEMRQRRLVSEELGEIIAKYGDERRTKITAYEGDMSEEDLIAE 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YRAQRRGGKG  G  +R +D V   F+ STH  +L F++ 
Sbjct: 514 EDVVVTITRGGYAKRTSIDAYRAQRRGGKGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ L N+L++   E +  I+     +      Y+V AT+ G
Sbjct: 574 GRVYRFKAYELPEAARDARGQHLANLLAMQPDEHVMEILSLRNYD---EAPYLVLATRSG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ +L+++      G IA+ L   DE+++    ++E+D+LL +K  Q +RF  +   +
Sbjct: 631 MVKKTRLAEYDSPRSGGLIAINLRDDDEVIAARLVSEEDDLLLVSKNAQAIRFKATDEVL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+  A+GD++++M ++   D                            
Sbjct: 691 RPM-GRATAGVIGMRFAEGDELLAMEVIRDGD---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                   + +L  +E G+ KRT +  + +  R GKG+    + 
Sbjct: 722 ------------------------EEVLVATEGGYAKRTPADQYPVQGRGGKGVLTAKIV 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G L+    V   D++  ++  G +IR    EI+ + R T GV +   ++ + +V+
Sbjct: 758 Q--SRGKLIGAIMVRPEDEVFAITSNGGVIRTRAAEIKRSGRQTMGVRLMHLSEGDSLVA 815

Query: 894 VERIRESEIVDEAESTE 910
           + R  ES   +E  + +
Sbjct: 816 LARNAESLNNEENGAGD 832


>gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 812

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/892 (39%), Positives = 528/892 (59%), Gaps = 83/892 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             VSI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++G  + +   K AR
Sbjct: 3   QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YDAL RMAQD+S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 63  VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   L D+ K+TVDFRPNYD +  EP VL  + PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+    + ++D P   ++ LM+ ++GPDFPT   +    G+ +AY TGRG++ +RG   I
Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAGQGLYDAYTTGRGTVKVRGKVEI 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+     + IV+ EIP+ +NK++++EKIA LV E++I  +ADLRDESDR+G RVVI+LKR
Sbjct: 243 EERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLKR 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D+++N LY+YT L+S F +NM+A+ G +P+   L   L+ F+  R EV++RRT+Y 
Sbjct: 303 GTIPDIVVNALYKYTPLESSFGINMLAVVGNRPQLLNLKQALEIFLEHRREVIIRRTRYD 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LM                  
Sbjct: 363 LRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALM------------------ 404

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                   G   LSE Q +AIL++RL RLT L  + +  E N L  +I+    +L +   
Sbjct: 405 --------GRFTLSEAQAQAILDMRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEV 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  +I++E+  ++D   T RRT ++E     ++ ED I  ED+V+T+S  GY+KR  L  
Sbjct: 457 LRSVIREEIGELRDTFATKRRTEVLEEELDGIDIEDLIPDEDVVITLSRRGYIKRTTLDN 516

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +GV   ++DFV D    + H  +L F++ G +++ KV R+P GS  A+G
Sbjct: 517 YQQQRRGGKGIAGVHTSEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKG 576

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N++ L++ E +T ++   E      + Y +F T+ G V+R+  S + +  ++G IA
Sbjct: 577 VHIANLVQLDKDELVTNVLTVREFA---EDRYFLFVTRRGMVKRSSASLYAKCRKTGLIA 633

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V    +   I+LTT  G  +RF    +R   GR++ GV+GI+L   D+V
Sbjct: 634 VGLRPDDELIMVREVDEHCHIVLTTGDGMAIRFQCEDVRPM-GRSATGVKGIALRGKDRV 692

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  I+   D                                                  
Sbjct: 693 VACVILAEEDTTS----------------------------------------------- 705

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I++VS  GFGKRT +  +R+ +R G G++   V+   + G ++   PV D+D ++L
Sbjct: 706 ---MIMSVSANGFGKRTKADLYRVQSRGGVGVKNFKVTP--KTGDVIGAMPVRDDDALVL 760

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++    ++R+ +N++R   RAT+GV +    +   VV  +RI E E+VD  E
Sbjct: 761 LTSTNKILRMGLNDVRSVGRATQGVRLVRLDEGALVVGFDRIDEREVVDGEE 812


>gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
 gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359]
          Length = 821

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/903 (41%), Positives = 530/903 (58%), Gaps = 87/903 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE++   +  V +  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N
Sbjct: 2   DEQQFDKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG++++YDA  R+AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF PNYDGS QEP VL A+ PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG V +ID+PD+ LD LM  I+GPDFPTGA ILGR GI  AY+TGRGS+
Sbjct: 182 NIPPHNLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKILGREGILKAYSTGRGSV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE  S  + +IV+TEIPYQVNKA ++E IA+L R K I  I  LRDESDR+G 
Sbjct: 242 KMRSCAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+   + D+ILN+LY++T LQ  F V M+AL    P   TL  +L  ++  R+ V
Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGHPRVLTLREVLAYYLEHRKVV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+KA  RAH+L GL IA+ ++DEV++ IR S   E A+  LM +        
Sbjct: 362 VTRRCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q+ AIL++RL RLTGL RD I+ E   L   I    
Sbjct: 414 ------------------FDLSEKQSIAILDMRLRRLTGLERDKIQEEYAELEKTIDYLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +L+GII+ ELL  K +    RRT+I     ++  ED I  E MV+T++  GY+
Sbjct: 456 SVLADEHKLMGIIRDELLETKKKYADKRRTQIEADTSELNVEDLIPNERMVLTLTRRGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  +VY  Q +GG+G  G+  +DED V  L   S H +VLFF++ G VY+ K + +P 
Sbjct: 516 KRINANVYHTQNKGGRGIKGMATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPE 575

Query: 609 GS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            +   ++G A IN+L L+QGE++  ++   + +   N   +  AT+ G V++  L +F  
Sbjct: 576 ANSRNSKGIAAINLLPLSQGEKVNALIDVDQVDPQAN---LFMATERGLVKKTSLQEFSN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G IA+ L   D +  V     + +I+L TK G  + F  + +R   GRN+ GVRGI
Sbjct: 633 VRRNGLIAISLMDGDHLAKVRMTKGDQNIILATKQGMAICFKETDVRPM-GRNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +LA+ D VI   I+                                              
Sbjct: 692 TLAEDDMVIGADILADD------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +LTVSE+GFGKR +   +++  R GKG++   ++   + G +V V  V
Sbjct: 709 ----------SQVLTVSEEGFGKRNNVDAYKVQRRGGKGVKNFKITP--KTGVIVGVEVV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            +  ++IL++  G +IR  +  I +   R T GV I    ++++V +++ I      +  
Sbjct: 757 RNTQELILITSNGIVIRTDIESIGVKKGRNTSGVKIQRLEENDKVAALDTISVEGSDEPV 816

Query: 907 EST 909
           + T
Sbjct: 817 QDT 819


>gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3]
          Length = 846

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/886 (40%), Positives = 528/886 (59%), Gaps = 85/886 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             + + +  V I +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +    
Sbjct: 2   NFDGQKLIPVEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A   G V+G+YHPHG+A++YDAL RMAQ +SLR  L++G GNFGS+DGD PAA R
Sbjct: 62  AYRKSATTVGNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + +  +L D+ K+TVDF+PN+D   +EP+V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRISLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG   +IDNPD  L+ L   I+GPDFPTG +I+GR GI+ AY  GR  I 
Sbjct: 182 IPPHNLGEVIDGMALLIDNPDATLEELTAHIQGPDFPTGGIIMGRAGIREAYVKGRSRIT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    R +I+VTEIPY V+KA ++E IAEL +EKRI  I+DLRDESDR+G R
Sbjct: 242 LRAKATIEEDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELKR A+  V+LN+LY Y+ LQ    V M+AL    P    L  IL  ++ F+E+VV
Sbjct: 302 IVVELKRDANPQVVLNRLYTYSQLQETVPVIMLALVNGHPRVLPLRDILTEYIHFQEQVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L GL IA+  +DEV+RI+R S +    +  LM+R         
Sbjct: 362 TRRTQYDLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L ++Q +AI+++RL +LT L R+ I  EL +L  +I     
Sbjct: 413 -----------------FELDDIQAQAIVQMRLGQLTNLEREKIEEELAALETKIANFKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R+L I+K+E L VK +    RRTRI     +++ ED I  ED+V+T+++ GY+K
Sbjct: 456 ILADEQRILQIVKEEALEVKAKFGDERRTRIENVSGEVDVEDLIPVEDVVLTLTNFGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P + Y +QRRGG+G +G+  R+ED   +LF+ STH  VLFF+S G  Y+ K + +P G
Sbjct: 516 RLPAAAYHSQRRGGRGVNGLTRREEDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEG 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G  + NIL + Q E IT ++  P+ E    + Y+V  TK G V+R  L ++    
Sbjct: 576 SRTSKGMNVANILPVAQDENITAMIKVPKFE---EDCYLVMVTKKGIVKRTSLKEYDTAR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G I + L+  DE++ V        IL+ T+ G  +RF  +  R   GR + GV+ ISL
Sbjct: 633 KAGVIGILLEEDDELVGVLLTDGSAHILVGTRNGVAIRFVETDARPM-GRAAHGVKAISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD V+ + +   A +                                           
Sbjct: 692 EGGDYVVGVTVPNGAGS------------------------------------------- 708

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L ++E G+GKR    DFR+ NR GKG+ + ++++  + G +  +  V +
Sbjct: 709 ----------LLLITENGYGKRVPFEDFRVQNRGGKGLTSYNINE--KTGPVAGLRVVEE 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +D  + +S  G +IRVPV EI + SR  +GV +    ++ +VV+V 
Sbjct: 757 SDDALFISSDGVVIRVPVAEIPVYSRYAQGVRVMRVGEETKVVTVT 802



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 93/253 (36%), Gaps = 16/253 (6%)

Query: 535 REDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ED  + + +  G VKR  L  Y   R+ G    G+++ ++D +  + +      +L  +
Sbjct: 606 EEDCYLVMVTKKGIVKRTSLKEYDTARKAG--VIGILLEEDDELVGVLLTDGSAHILVGT 663

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +          P  R    +  +SL  G+                   ++  T+
Sbjct: 664 RNGVAIRFVETD---ARPMGRAAHGVKAISLEGGDY------VVGVTVPNGAGSLLLITE 714

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    DF   NR GK     +  ++   V       + +D L  +  G  +R P+
Sbjct: 715 NGYGKRVPFEDFRVQNRGGKGLTSYNINEKTGPVAGLRVVEESDDALFISSDGVVIRVPV 774

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + I     R + GVR + + +  +V+++    H +   +E     +         + ++E
Sbjct: 775 AEI-PVYSRYAQGVRVMRVGEETKVVTVTSAAHEEESEEESETSPEDAEQPETETAENSE 833

Query: 771 EITSLKNDSSVEG 783
           +      D+  + 
Sbjct: 834 KPDGGSTDNKPQS 846


>gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 549/900 (61%), Gaps = 85/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLYERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  N
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +++++D G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817


>gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6]
 gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6]
          Length = 797

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/881 (39%), Positives = 524/881 (59%), Gaps = 88/881 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V+IT+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + G+  ++ Y K AR
Sbjct: 4   VQVNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSAR 63

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+VMGKYHPHG+AAIY+ + RMAQ +S+R  LI+GQGNFGS+DGDP AA RYTE RL 
Sbjct: 64  VVGDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLS 123

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  +L D+ K+TVDF PNYDGS +EP VL  + PN+L+NG  GIAVGMATNIP HNL 
Sbjct: 124 KIAEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLN 183

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+    + +IDNP   +  LM  + GPDFPTG  I+GR GI++AY TG+GSI+++  S I
Sbjct: 184 ELAGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIVGRAGIESAYLTGKGSIIMQAKSEI 243

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+      +I+ +E+PYQVNKA ++E +AE+V+  R+  I+DLRDESD++G R+V+++K 
Sbjct: 244 EE-GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKT 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G +A+V+LNQL+++T+LQ+ + +N + L    P   +L   L+ ++ +R  VV RRT++ 
Sbjct: 303 GFNANVVLNQLHKHTALQTSYGINNMVLVDGMPRILSLKETLEQYIYYRSIVVERRTRFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+ A  RAH+L GL IA+ N+DEV+RII+ +P P  AR  L++                 
Sbjct: 363 LDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIE----------------- 405

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q +AIL++RL RLTGL ++ I +E   L   I     ILSS   
Sbjct: 406 ---------AFLLSEEQAKAILDMRLQRLTGLEQEKIVSEAAELEKLIAHLRQILSSNLE 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L IIK EL  +  +    RRT+I+E   ++ +ED I  E++ VT++  GY+KR P++ Y
Sbjct: 457 ILSIIKDELTELISKYGDERRTQIIEADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGG+G  G   + E+FVTD+   ST   +LFF+  G  +  KV+ +P     ARGK
Sbjct: 517 RMQRRGGRGVIGAETKTEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPALGRAARGK 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           +++N+L L   ERI   +P           Y+V  T+ GN+ +  L  F    + G  A+
Sbjct: 577 SIVNLLQLEPDERIAGAIPVKSF----QAGYIVLVTRSGNIVKMPLQAFSNPRKGGIKAV 632

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D ++S +    E ++L+ TK G+ +RF    +R  + R ++GV+ ISL  GD++I
Sbjct: 633 NLK-GDSLVSAKLTNGEKELLVATKFGKAIRFKEGDVRA-SNRGTMGVKAISLNMGDELI 690

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM ++                                                       
Sbjct: 691 SMDVIEPG---------------------------------------------------S 699

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LTV+ +G+GKRT   ++    R GKG++  D  K    G +     V++ D++++ 
Sbjct: 700 GSTLLTVTNQGYGKRTELEEYPQQRRGGKGVKNIDARK----GYVCCTTTVSEEDELLVT 755

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +  G +IR+P ++IR+  R+T+GV I +    + V ++ RI
Sbjct: 756 TRDGVIIRIPASDIRVQGRSTQGVRIMNVKPGDEVAAIARI 796



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 13/215 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADA 746
              +E   +  T  G   R P++  R    R   GV G      + V  +S A       
Sbjct: 492 LIQEEEVAVTITSSGYIKRQPVNTYR-MQRRGGRGVIGAETKTEEFVTDVSTASTKDYLL 550

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            + ++         +   +       + +                    +  +I+ V+  
Sbjct: 551 FFTDKGKAHWLKVYEVPALGRAARGKSIVNLLQLEPDERIAGAIPVKSFQAGYIVLVTRS 610

Query: 807 GFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           G   +     F          GI+A ++    +  +LV+    N   ++++ +  G  IR
Sbjct: 611 GNIVKMPLQAFSNPRKG----GIKAVNL----KGDSLVSAKLTNGEKELLVATKFGKAIR 662

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
               ++R ++R T GV   S    + ++S++ I  
Sbjct: 663 FKEGDVRASNRGTMGVKAISLNMGDELISMDVIEP 697


>gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301]
 gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 865

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/919 (37%), Positives = 541/919 (58%), Gaps = 69/919 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S +    E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I+NP I+   L EII+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  + TGRGSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK+
Sbjct: 241 IRETFKTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +
Sbjct: 361 SLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSIS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS +Q  AIL+++L RLT L  D 
Sbjct: 421 AREKL--------------------------QNDHKLSSIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ E N L  +I     IL+S+ R+  II +EL  + +   +PR+T I++    ++D D 
Sbjct: 455 IKGEHNDLTQKINLYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L F
Sbjct: 515 IANERSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+I+         ++ Y++  T
Sbjct: 575 SDKGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSIVAVDSFV---DDSYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +K G  + F   I
Sbjct: 632 KAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGMAIHFRLDI 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L +GD ++SM ++    AD   +I Y K              
Sbjct: 692 NELRPL-GRTARGVKSMNLREGDNLVSMDVLTSNLADQLAKIEYPK-------------- 736

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           ++  +E      ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 737 -------------EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV++  + + ++++LV++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKYDQLVSLKVLGEGEELLLVTEKGVIVRTNADQISQQSRAATGVKLQRLDDGDH 841

Query: 891 VVSVERIRESEIVDEAEST 909
           +  V  +   +I +E + +
Sbjct: 842 LSEVVLVPREQIEEEDQPS 860


>gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
 gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a]
          Length = 821

 Score =  853 bits (2204), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/903 (41%), Positives = 539/903 (59%), Gaps = 84/903 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LDVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I  E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKDELEDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++   + E    N+ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERIHENVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +R     +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   ++                                      
Sbjct: 691 RGIKLKTGDVVVGAGVLESDES-------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+G+GKR  +  + +  R G G +   ++  ++ G +VAV
Sbjct: 713 ------------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIE 818

Query: 904 DEA 906
            E 
Sbjct: 819 SED 821


>gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1]
 gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1]
          Length = 826

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/906 (39%), Positives = 543/906 (59%), Gaps = 86/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT++ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFSENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   ++                                           
Sbjct: 691 RGINLRENDYVVGSGVL------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 708 ----------GADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +N N+ +++++  G +IR  + ++    R+T GV +       +V S+  +   E  D
Sbjct: 756 TIINSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDGSQVASLTIVPTEEEQD 815

Query: 905 EAESTE 910
           +    +
Sbjct: 816 QTGDDD 821


>gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
 gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552]
          Length = 820

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/900 (41%), Positives = 555/900 (61%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE+GI  V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM  +G      Y
Sbjct: 2   EERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ DL +DT+DF PNYDG  QEP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGEV+D  +AV  NPDI +  LM   I+GPDFPTG  ILG++ IK AY TG G IV+
Sbjct: 182 PHNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYILGKSAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G+++ I+VTE+PY VNKA M+EK+++LVR+K+I  I ++RDES+R G RV
Sbjct: 242 RAKTEIEE-KGNKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ TSLQ+ F  N +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMISLYLEHQEEVIR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA DRAH+L GL  A+  +D ++ +IR S   +  +  LM+           
Sbjct: 361 RRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEE---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +S+ Q +AI E++L RL GL R  I ++LN L   I +  DI
Sbjct: 411 ----------------FNMSDKQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R RLL II  EL  +KD+    RRT I++G  D+EDED I  ED+++++++ GY+KR
Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y++Q RGG+G  G+   ++D V+ L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 515 MPVDTYKSQNRGGRGIKGMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L L++ E I +++     +   N N Y+ F TK G V+R  +++F  I 
Sbjct: 575 RSAKGLPVVNLLDLDKEESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++ V+  +  + IL+    G+ VRF  S +R   GR S GV+GI++
Sbjct: 635 QSGKIAICLKDNDQLVQVKLTSGNDQILIAASNGKLVRFEESNVRPM-GRISSGVKGINV 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +V+ M                                                   
Sbjct: 694 -DGSEVVGMT-------------------------------------------------- 702

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + ++IL V+E+G+GK +   ++R+SNR GKG++    ++ N  G +VA+  VN 
Sbjct: 703 ---TDKEGKYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERN--GKIVALRAVNG 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++ +++++D G +IR+P+ ++  A RAT+GV +    ++ +V SVE + ++   D+ +  
Sbjct: 758 DEDLLIITDDGIMIRLPMEQVTTAGRATQGVRLIKVNENNKVSSVEVVEKAVEQDDVDDE 817


>gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908]
 gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908]
          Length = 905

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/923 (41%), Positives = 543/923 (58%), Gaps = 86/923 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + R+AQ +S+R  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+   P VL  R P +LVNG  GIAVGMATNIP H
Sbjct: 126 RMDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I+NPD+ ++ LME I GPDFPT  +I GR GI +AY TGRG  V+R  
Sbjct: 186 NLNEVVSGCLALIENPDLTINELMEYIPGPDFPTAGIINGRKGIIDAYHTGRGRAVMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+V+E
Sbjct: 246 AEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +QS F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LAIA+AN+D ++ +I+ SP P  A+ +L+   W   +++ +++ 
Sbjct: 366 VFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEIIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +I +EL  V +     RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 ALLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L+ Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++NIL L++GERIT I+                               
Sbjct: 606 LPLASRTARGRPIVNILPLSEGERITAIL------------------------------- 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V    ++  I++ T  G   +  ++    ++   + G+ 
Sbjct: 635 --------------------PVREYAEDKYIIMATSHGTVKKTALT---AYSNPRANGII 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L  GDQ+I + I   ++               ++   S   E     +    +    
Sbjct: 672 AVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARNSETGEVKLDPETGEEMIALR 731

Query: 786 SEERCQE-----------------LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +  R                    +   E  ILTV+E GFGKRT   ++   +R  KG+ 
Sbjct: 732 AMGRTATGVRGIKLEDGQQVVSLIVPKGEGDILTVTENGFGKRTDLAEYPAKSRGTKGVV 791

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  VS+ N  GA+V    V +ND+I+L+S+KGTL+R P   +    R T+GV I  TA+D
Sbjct: 792 SIKVSERN--GAVVGAVQVGENDEIMLISNKGTLVRTPATGVSSIGRNTQGVTIIRTAED 849

Query: 889 ERVVSVERIRE-----SEIVDEA 906
           E+VV ++RI E      E+ +E 
Sbjct: 850 EKVVGLQRIDEIQEPAPELDEEG 872



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 61/435 (14%), Positives = 145/435 (33%), Gaps = 26/435 (5%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLID 435
           L +  +   ++  L   + +   ++ +I              +R+   ++  D+ ++ + 
Sbjct: 474 LKEYEELLEIIAALLYILRSSVRLMEVITEELQEVLENFGDERRTVINANEVDMSLEDLI 533

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +    + +   +  ++ Q     + +     G     +++E     + +    D +   S
Sbjct: 534 NEEDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFS 593

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTV-SHLGY 547
               +   ++  +     T R   IV  L   E E            ED  + + +  G 
Sbjct: 594 DFGKMYWLKVYQLPLASRTARGRPIVNILPLSEGERITAILPVREYAEDKYIIMATSHGT 653

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK--VWR 605
           VK+  L+ Y   R  G     V ++D D +  + I      ++ FS+ G V +       
Sbjct: 654 VKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITDGSNDIMLFSNEGKVVRFNEKARN 711

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNNLYVVFATKHGN 656
              G  +   +    +++L    R  T +                      ++  T++G 
Sbjct: 712 SETGEVKLDPETGEEMIALRAMGRTATGVRGIKLEDGQQVVSLIVPKGEGDILTVTENGF 771

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+++   +R  K  + +   +     +      + ++I+L +  G  VR P + +
Sbjct: 772 GKRTDLAEYPAKSRGTKGVVSIKVSERNGAVVGAVQVGENDEIMLISNKGTLVRTPATGV 831

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ ++V+ +  +        E       +       + +     
Sbjct: 832 SSI-GRNTQGVTIIRTAEDEKVVGLQRIDEIQEPAPELDEEGNPIIPAVADEAVEATPEG 890

Query: 774 SLKNDSSVEGNISEE 788
              N          E
Sbjct: 891 EAPNADDAPEAEPAE 905


>gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 811

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 527/887 (59%), Gaps = 84/887 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I DE++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+   K AR+
Sbjct: 4   QVTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L+ GQGNFGS+DGD  AA RYTE R+ +
Sbjct: 64  VGDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSR 123

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   + D+ K+TV+FRPNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 124 LASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGE 183

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +VDG +  +D+P+  +  L  +++GPDFPTG       G+++AY TGRG++ IRG   +E
Sbjct: 184 LVDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGRGLRDAYETGRGTVKIRGRVEVE 243

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +     + IV+ EIPY +NK++++EKIA L  E+RI  I DLRDESDR+G RVVI+LKRG
Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLKRG 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++++NQLY+YT L++ F +NM+A+ G +P+  TL  + + F+  R EV++RRT Y L
Sbjct: 304 TIPEIVINQLYKYTPLETSFGINMLAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHYDL 363

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ N+DEVV +IR S  P  A+  LMQR                 
Sbjct: 364 RKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQR----------------- 406

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSEVQ +AIL++RL RLT L  + +  E   L  +I+    IL +   L
Sbjct: 407 ---------FSLSEVQAQAILDMRLQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVL 457

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G+I+ EL  +K+   TPRRT ++E     ++ ED I  ED+V+T+S  GY+KR PL  Y
Sbjct: 458 RGVIRDELKELKETYATPRRTEMLEDELEGIDIEDLIPDEDVVITLSRRGYIKRTPLDSY 517

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + QRRGGKG +GV   D DFV D  + + H  +L F++ G +++ KV ++P GS  A+G 
Sbjct: 518 QQQRRGGKGIAGVHTGDGDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGM 577

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L + + E + T +   E        Y +F+T+ G V+R+  S + +  R+G IA+
Sbjct: 578 HINNLLPMEENEWVNTALTIREFT---EEKYFLFSTRKGMVKRSSASLYAKARRTGLIAV 634

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V       +++LTT+ G  +RF    +R   GR++ GV+GI+L++ D V+
Sbjct: 635 GLREGDELIMVREVDDNCEVVLTTEKGIAIRFGCGDVRPM-GRSATGVKGIALSQDDSVV 693

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +   V                                                       
Sbjct: 694 ACVTVQGGL--------------------------------------------------- 702

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  I+TVS  G+GKRT    +R+ +R GKG+    V+   + G ++    V  NDQ+IL+
Sbjct: 703 ESEIMTVSRYGYGKRTLIDRYRVQSRGGKGVINFKVTP--KTGEVLGAMTVVSNDQLILL 760

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    +IR+ V E+R   RAT+GV +    + + VV  +R+ E E  
Sbjct: 761 TSTNKIIRIGVKEVRSVGRATQGVRLVWLDEGDHVVGFDRVSEQEQE 807



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 66/393 (16%), Positives = 138/393 (35%), Gaps = 29/393 (7%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + L+ + R+    +      + N + +  +IR   +     +E          ++D ++ 
Sbjct: 431 EKLIEEYRELLKKIEYFKSILENEEVLRGVIR---DELKELKETYATPRRTEMLEDELEG 487

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           ID        D  + LS         L   +    G   I       G  +++ L   + 
Sbjct: 488 IDIEDLIPDEDVVITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGDGDFVQDFLVTTNH 547

Query: 494 RSRLLGIIKQELLSVKDELDTPR-RTRIVEGLLDMEDEDC------------IVREDMVV 540
           +  LL   K  +  +K        RT     + ++   +                E   +
Sbjct: 548 QYLLLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTALTIREFTEEKYFL 607

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VKR   S+Y   RR G     V +R+ D +  +  V  +  V+  +  G   +
Sbjct: 608 FSTRKGMVKRSSASLYAKARRTG--LIAVGLREGDELIMVREVDDNCEVVLTTEKGIAIR 665

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +      A G   +  ++L+Q + +   +       S     ++  +++G  +R 
Sbjct: 666 FGCGDVRPMGRSATG---VKGIALSQDDSVVACVTVQGGLESE----IMTVSRYGYGKRT 718

Query: 661 KLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +  +   +R GK  +         E+L   T    + ++L T   + +R  +  +R   
Sbjct: 719 LIDRYRVQSRGGKGVINFKVTPKTGEVLGAMTVVSNDQLILLTSTNKIIRIGVKEVRSV- 777

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           GR + GVR + L +GD V+    V   + +  +
Sbjct: 778 GRATQGVRLVWLDEGDHVVGFDRVSEQEQEQLD 810


>gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
 gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319]
          Length = 862

 Score =  853 bits (2203), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/908 (39%), Positives = 551/908 (60%), Gaps = 86/908 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD  A
Sbjct: 63  SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE +  + ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIE-SDENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RR ++ L KA++RAH+L  L  A  N+DEVV IIR S  P  A+R L +R      
Sbjct: 362 DVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                   E+Q++AI+++RL++LTGL  D +  E   L   IK+
Sbjct: 416 --------------------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKD 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL++  R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILNNPERCKEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+LSL+ G+ +   +     +D+   ++ YVVFATK G V++  L  
Sbjct: 576 PEGDKNSKGRAIQNMLSLDPGDSVNAFLRIQGLDDDEFLDSHYVVFATKQGVVKKTSLRA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V      N++++  + G+  RF  S IR   GR S GV
Sbjct: 636 YSRPRTNGVIAININDGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +   D+VI M +V                                         
Sbjct: 695 RGMRLDEDGQDEVIGMIVVNDPV------------------------------------- 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LV
Sbjct: 718 --------------NETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           A+  V D++ +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++  SE
Sbjct: 762 AIKNVTDDNDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDIIASVCKVMSSE 821

Query: 902 IVDEAEST 909
           +  + E  
Sbjct: 822 MESQVEDD 829


>gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
 gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01]
          Length = 895

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/893 (43%), Positives = 543/893 (60%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+++ RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  LL DL KDTVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDGC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSR 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F +  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNIKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I   + D++ E+ I +ED+VVT+S+ 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDIYGDERRTEITAAVHDIDMEELIAQEDVVVTLSNA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V   + E  I + T  G   +  +     FA   + G+ 
Sbjct: 636 ---------------------VSEFSNEKFIFMATGDGTVKKTSLDQ---FANVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I    D + D  +        +           T+           
Sbjct: 672 AVNLRDDDSLIGVDI---TDGNSDIMLFSKSGKVVRFNEDKVRPMGRTASGVRGMKLPED 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 106/269 (39%), Gaps = 15/269 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E  +   +  G VK+  L  +   R  G     V +RD+D +  + I   ++ ++ F
Sbjct: 639 FSNEKFIFMATGDGTVKKTSLDQFANVRANG--LIAVNLRDDDSLIGVDITDGNSDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G V +    ++      A   + +  + L + +++ +++         N   ++  T
Sbjct: 697 SKSGKVVRFNEDKVRPMGRTA---SGVRGMKLPEDDQVVSLI------VPSNEGDILTVT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +L+++    R+ +  + +   D     +      + +++++ T  G  VR  
Sbjct: 748 QNGYGKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTR 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           ++ +    GRN+ GV  I  A+ + V+ +  +   +          +  +A         
Sbjct: 808 VAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEAEIVEGEETEEANADAVNAETVN 866

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798
            E T +   S  + + + +   + +   +
Sbjct: 867 AEGTVVSESSEEQASDASDSESDSEQDTE 895


>gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl]
 gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl]
 gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl]
          Length = 822

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/890 (40%), Positives = 530/890 (59%), Gaps = 89/890 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+IT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM  MG   N+ Y K A
Sbjct: 6   VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK HPHG++A+YDALARMAQ WS+R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ KDTVDFR N+DGS++EPVVL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ D    +I++P+  ++ LM+II GPDFPT  +ILG  GI  AY+TGRG I +R  +H
Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+       IVVTE+PYQVNKA + E+IAELV++++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILLK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F +NM+AL  +  +P   TL  +L+ ++  R+EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR+RAH+L GL IA+ NLD V++ IR S   E+AR  LM               
Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMS-------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q +AIL+L+L RL  L R  I +E   +   I E  DIL++
Sbjct: 412 ------------NFSLTERQAQAILDLQLRRLAALERKKIEDEYREVIKLIAELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +I+Q+L  +K++   PRRTRI+     ++ DED I    +++T++  GY+KR  
Sbjct: 460 PRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR QRRGG+G  G++ R++D V  L   ++  ++LFF+  G VY+ K   +P  S  
Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKAHEVPDSSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE++T+++   E     +  Y+V AT  G ++R +L ++ Q+  +G
Sbjct: 580 AKGLPLVNLISLEPGEQVTSMLAVREF----DAEYLVMATVRGKIKRTQLREYSQVRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D +  V       DILLTT  GQ +RF  S +R   GR + GV GI+LA G
Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLADG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM                                                     +
Sbjct: 695 DRVVSM-----------------------------------------------------D 701

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +   +L V+ +G GKRT+  ++ +  R+  G+    +   N++  + A   V ++  
Sbjct: 702 LAEEGADLLVVTARGIGKRTALSEYPVKGRATGGVITIKL--RNDLDEVAAAAVVREHSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +  ++  G ++R   +EI    RAT+GV I + A  +RV ++      E 
Sbjct: 760 LTFITTGGMVLRTSASEISRLGRATQGVTIVNVATGDRVAALSVEDPEEN 809



 Score = 81.4 bits (199), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 72/168 (42%), Gaps = 6/168 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++       D      K +   ++ ++   E+    +    +     E   ++L    +
Sbjct: 445 EVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVR 504

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++T++++G+ KR     +R   R G+GI+     + + +  L      N  D ++  +D
Sbjct: 505 VMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHL---LTCNSLDNLLFFTD 561

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +G + ++  +E+  +SR  KG   V + S    E+V S+  +RE +  
Sbjct: 562 RGKVYQLKAHEVPDSSRTAKGLPLVNLISLEPGEQVTSMLAVREFDAE 609


>gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555]
 gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555]
          Length = 806

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +  + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 3   DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +I+NP++ +  LM  I+GPDFPT  +I+G +GIK+AY TGRG I++R
Sbjct: 183 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    + +IV+TEIPYQVNK+ ++E +A+LV+ KRI  I+D+RDESDR G R+V
Sbjct: 243 AKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+A++ LNQLY++T +Q  F V M+ L   +P+   L  +L  ++ F+EE++ R
Sbjct: 302 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+  +DEV+ +IR S   E AR  L+ +           
Sbjct: 362 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 411 ---------------FNLSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++S LL +IK EL+ ++D+    RRT I     D+  ED I  E++V+T++H GY+KR+
Sbjct: 456 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH+ +LFF++ G VYK K + +P    
Sbjct: 516 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L+  E+I  ++ F E     ++ Y + ATK G V++ +++ +  I ++
Sbjct: 576 TAKGTNLVNLLPLDGDEQIQAVISFKE---IDDDNYFIMATKRGLVKKTEINQYASIRKN 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+  T ++++L+ TK G  +RF    +R   GRN+ GV+ I+L K
Sbjct: 633 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M I  + +             +                                
Sbjct: 692 KDIAVAMDIASNKEDILVVSENGFGKRTP------------------------------- 720

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                      V+E           + I  R GKGI     ++  + G +V    V D D
Sbjct: 721 -----------VTE-----------YTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V++I   SR   GV +  T +++RVV++ +I  +E
Sbjct: 757 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 806



 Score = 97.9 bits (242), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 59/260 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  T  G ++R     +    R   G  AM     D +  +   +  + IL  T  G+ 
Sbjct: 503 VITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKV 562

Query: 706 VRFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +     I   AGR + G   ++L    GD+ I   I      D                
Sbjct: 563 YKLKGYEI-PDAGRTAKGTNLVNLLPLDGDEQIQAVISFKEIDD---------------- 605

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            + + +  +++G  K+T    +    ++
Sbjct: 606 ---------------------------------DNYFIMATKRGLVKKTEINQYASIRKN 632

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G+ A ++        L+ V     + ++++ +  G  IR    ++R   R T GV   
Sbjct: 633 --GLNAINLRDG---DELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAI 687

Query: 884 STAKDERVVSVERIRESEIV 903
           +  K +  V+++     E +
Sbjct: 688 TLRKKDIAVAMDIASNKEDI 707


>gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
 gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM
           13280]
          Length = 929

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/889 (41%), Positives = 525/889 (59%), Gaps = 87/889 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 80  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIG 139

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  LL
Sbjct: 140 KYHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 199

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP  L AR+PN+LVNG  GIAVGMATNI  HN+GE V+   
Sbjct: 200 RDLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATC 259

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +ID+PD  +D LM I+ GPDFPTGA+I+G  GI+ +Y TGRGSI +R  +H+E T   R
Sbjct: 260 YLIDHPDATVDELMRIMPGPDFPTGALIMGTDGIRQSYETGRGSITVRAKAHVESTKTGR 319

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPY VNK  + EKIA LV EKRI  I+D+RDES ++G R+VIELK+G    V+
Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+YTSLQ+ F  N +AL    P+R +L  +L+ ++  + +VV RRT++ L KA+ R
Sbjct: 380 LNNLYKYTSLQTTFGANNLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 439

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G   A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 440 AHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIER----------------------- 476

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 S  QT AILE++L RLTGL RD I  EL  L   I    D+L+   ++LG+IK+
Sbjct: 477 ---FGFSPEQTTAILEMKLRRLTGLERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKE 533

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +    RRT+I     D+  ED I  EDMVVT++H GYVKR+P+  YRAQ+RGG
Sbjct: 534 EMREIARKFGDKRRTQITGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGG 593

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFS+ G VY+ KV  LP G+ QARG A++N+L 
Sbjct: 594 KGVSGVNLKEDDVIDEMFIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLP 653

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
              GE+I +++   E      + Y++FAT HG V++  ++ + +  R G IA+ +   D 
Sbjct: 654 FEDGEKIASVISCREFP---EDEYLMFATAHGMVKKTAMAAYDRSRRDGIIAINIKDGDR 710

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L V      + I++ T  G+ + F    +R   GR++ GVRGI +    +V+ M I   
Sbjct: 711 LLGVRRVKPGDKIIMATTAGKAIMFSEDQVRA-TGRDTSGVRGIGMKADAEVLGMEITNG 769

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
           +                                                       +  +
Sbjct: 770 SG-----------------------------------------------------ELFVI 776

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E+G+GKRT   D+   NR G+G+    ++     GAL A+  V    +++++++  T++
Sbjct: 777 TERGYGKRTPVADYPEQNRGGQGVYTIQMTDR--KGALAAMKVVGPQHELLIITEGATVL 834

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI--RESEIVDEAESTE 910
           RV   EI    RAT+GV + S  + +RV +V R+   + +  D AE  E
Sbjct: 835 RVKTAEISQTGRATQGVKMMSVDEGDRVTAVARMTAAKKKDGDSAEGEE 883


>gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/902 (40%), Positives = 551/902 (61%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  + D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+H  ++R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHVLLKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAE 907
           + +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817

Query: 908 ST 909
           + 
Sbjct: 818 TE 819


>gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
 gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales
           bacterium TW-7]
          Length = 891

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 392/925 (42%), Positives = 557/925 (60%), Gaps = 84/925 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   NEILPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKMSHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++GC+A+I NPD+ +  LM+ I GPDFPT A+I G+ GI+ AY TGRG + +R  
Sbjct: 186 NLTEVINGCLALIVNPDLTITELMDYIPGPDFPTAAIINGKKGIEQAYQTGRGKVYMRAR 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + IE      RE I+V EIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VI
Sbjct: 246 ADIETDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +VILN LY  T LQ++F +NMVAL   +P+ F L  +L+ F+  R EVV RR
Sbjct: 306 EIKRGDVGEVILNNLYAQTQLQTVFGMNMVALINNQPKCFNLKEMLEEFIIHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L GLAIA+AN+D ++ +IR SP P  A+  L  RSW   ++K +++
Sbjct: 366 TVFDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLE 425

Query: 433 LIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +++              DG  ++SE Q +AIL+LRL +LTGL  + I +E  +L   
Sbjct: 426 KAGEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLLDL 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL+S  RL+ +I+ EL+ +K +    RRT I     D+  ED I  E++VVT+S
Sbjct: 486 IAELLHILASPERLMEVIRDELVEIKAQYGDERRTEINAAAHDISLEDLITEENVVVTLS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G +Y  KV
Sbjct: 546 HEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRLYWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L   ERIT                                
Sbjct: 606 YQLPLASRAARGKPIVNLLPLEADERITA------------------------------- 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                               IL V    ++  I + T  G   + P++    ++ + + G
Sbjct: 635 --------------------ILPVREYEEDKYIFMATAFGTVKKTPLT---AYSRQRASG 671

Query: 724 VRGISLAKGDQVISMAIVLHAD--------------ADYDERICYMKHMSAQRRLISGDT 769
           +  ++L +GD +I + I    +               + +E     ++ + + R      
Sbjct: 672 IIAVNLNEGDSLIGVDITDGTNEIMLFTDAGKVVRFKEAEESAVVDENGNPEIRFKGVRP 731

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
              T+         +        +   +  ILTV+E G+GKRT   D+   +R+ +G+ +
Sbjct: 732 MGRTATGVRGIKMTDEQRVVSLIVPKTDGAILTVTENGYGKRTQLEDYPSKSRATQGVVS 791

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             VS+ N  GA+V    V+DND+I+L+S++GTL+R  VNE+    R T+GV++  T  +E
Sbjct: 792 IKVSERN--GAVVGAVQVDDNDEIMLISNRGTLVRTRVNEVSTVGRNTQGVILIRTIDEE 849

Query: 890 RVVSVERIRESEIVDEA----ESTE 910
           +VV ++RI E E+ +      E  E
Sbjct: 850 QVVGLQRIEEIEVTESDLINTEDVE 874



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 87/254 (34%), Gaps = 14/254 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PL+ Y  QR  G     +   D     D+        ++ F
Sbjct: 641 YEEDKYIFMATAFGTVKKTPLTAYSRQRASGIIAVNLNEGDSLIGVDI--TDGTNEIMLF 698

Query: 593 SSLGFVYKEKVWRLPIGS--------PQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           +  G V + K                     + +    +  +G ++T             
Sbjct: 699 TDAGKVVRFKEAEESAVVDENGNPEIRFKGVRPMGRTATGVRGIKMTDEQRVVSLIVPKT 758

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701
           +  ++  T++G  +R +L D+   +R+ +  + +   +     +        ++I+L + 
Sbjct: 759 DGAILTVTENGYGKRTQLEDYPSKSRATQGVVSIKVSERNGAVVGAVQVDDNDEIMLISN 818

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  ++ +    GRN+ GV  I     +QV+ +  +   +    + I      +  
Sbjct: 819 RGTLVRTRVNEVSTV-GRNTQGVILIRTIDEEQVVGLQRIEEIEVTESDLINTEDVETVD 877

Query: 762 RRLISGDTEEITSL 775
             +     +   S 
Sbjct: 878 TVIDEVVDDNPPSE 891


>gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
 gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11]
          Length = 878

 Score =  852 bits (2202), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/893 (43%), Positives = 543/893 (60%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N +I +D LM  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I+ EL+ V+D     RRT I   + D++ ED I +ED+VVT+S  
Sbjct: 486 ELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSRE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVFQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V   +++  I + T  G   +  +     FA   + G+ 
Sbjct: 636 ---------------------VSEYSEDKFIFMATGDGTVKKTSLDQ---FAKVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D +I + I    D   +  +        +           T+           
Sbjct: 672 AVNLREDDSLIGVDI---TDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGVRGMKLSGE 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++   +R+ +G+ +  VS+ N  G++V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              D D+ ++++D GTL+R  V+E+    R T+GV +  T+++E VV+++RI 
Sbjct: 787 QAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRID 839



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +L   A+    +   + +    R       ++   +  + +   I +   ++L  +E  
Sbjct: 479 ALLDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDV 538

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ K     D+    R GKG  AT +   + I  L      N +D I+  S +
Sbjct: 539 VVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERL---LVANTHDNILCFSTR 595

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           G    + V ++  ASR  +G   V I    + ER+ ++  + E    
Sbjct: 596 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSED 642



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/424 (13%), Positives = 148/424 (34%), Gaps = 38/424 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L++ +     +  L   +A+ + ++ +IR     E      M      ++I   I  ID 
Sbjct: 474 LDEYKALLDEIAELMHILASTERLMEVIRD----ELVMVRDMYGDERRTEIGAAIHDIDM 529

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNELNSLGIEIKECLDILSSR 494
                  D  + LS       ++ ++       R     ++       +  E L + ++ 
Sbjct: 530 EDLITQEDVVVTLS---REGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTH 586

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542
             +L    +           P+ +R   G   +        E +   +            
Sbjct: 587 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 646

Query: 543 --SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VK+  L  +   R  G     V +R++D +  + I    + ++ FS  G V +
Sbjct: 647 MATGDGTVKKTSLDQFAKVRANG--LIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVR 704

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
               ++      A   + +  + L+  +++ +++         N   ++  T++G  +R 
Sbjct: 705 FNEEQVRGMGRTA---SGVRGMKLSGEDQVVSLI------VPSNEGDILTVTQNGYGKRT 755

Query: 661 KLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            LS++   +R+ +  + +        ++        ++ ++ T  G  VR  +S +    
Sbjct: 756 VLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDAGTLVRTRVSEV-SQV 814

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN+ GV  I  ++ + V+++  +   +          +   A     + +T +  +   
Sbjct: 815 GRNTQGVTLIRTSENENVVALQRIDEVEEAEIIEGEEGEVTEATVTTEATETPQADTDAE 874

Query: 778 DSSV 781
            +  
Sbjct: 875 STEE 878


>gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977]
 gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977]
          Length = 804

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/888 (41%), Positives = 533/888 (60%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M Q G+   +K+ K
Sbjct: 2   SQVLPVEITEEVKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + GEV+ KYHPHG+ A+YDA+ R+AQ+W+LR  LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 62  SAGVVGEVIKKYHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ KDTVDF  N+DG+ +EP VL A +PN+L NG  GIAVGMAT+IP H
Sbjct: 122 RLSPIALELLRDIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+++   A+ID+P+I LD +M+ + GPDFPTG  +  R G+K AY TG+GS+ +R  
Sbjct: 182 NLGELINALAAMIDDPEITLDGVMQHLPGPDFPTGGRL-NRVGLKRAYETGKGSLRLRAR 240

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+  G R+ +VVTEIPYQVNKA+++ +IA LVR K++ DI+ LRDESDRQG R+VIE
Sbjct: 241 VRTEE-RGGRKMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA+ DV+LNQL++ T+LQ+ F++NM+A+   +P    L+ +++A++  R EVVVRRT
Sbjct: 300 LKRGANPDVVLNQLFKQTNLQTSFTINMLAIVNGEPRVLPLLAMMRAYLDHRREVVVRRT 359

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DRAHVL GL IA+ +LDEV+ +IR S +   A+  LMQR             
Sbjct: 360 RFDLKKAEDRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQR------------- 406

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSEVQ +AIL++RL RLTGL R+ ++ E   L   I     IL+ 
Sbjct: 407 -------------FALSEVQAQAILDMRLQRLTGLEREKLQAEYRELQETIAYLRAILAD 453

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +RL G++K ELL+++++    RRT I E       ED I  E MV+T++  G++KR PL
Sbjct: 454 ETRLWGVVKDELLAIREKFADERRTLITEFAEGFNPEDLIEDEPMVITMTAAGFLKRTPL 513

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG G      +DED  T +F+   H  +LFF++ G VY+EKV+ LP     A
Sbjct: 514 EDYRAQGRGGMGAKAGRTKDEDEATRVFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTA 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  + + L L +GE I  ++         +  Y VFAT+ G V++  + D+  +N SG 
Sbjct: 574 RGTHVKSFLPLEEGEEIKALLSLRSLT---DPGYFVFATRKGVVKKTAIRDYQNLNASGL 630

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   D+++ V        +++ T+ G+ +RFP+  +R   GR S GVRGI L +GD
Sbjct: 631 IAINLVEGDDLVDVRIAGSGAQVVMATRGGKAIRFPLDEVRA-TGRASQGVRGIRLKEGD 689

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ +V                                                    
Sbjct: 690 EVVSLIVVP--------------------------------------------------- 698

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           K  E  +L +S  G+GKRT   ++ +  R G+G+    +++  ++G L A+  V+ ++ +
Sbjct: 699 KDWEGDLLAISSHGYGKRTPLEEYPLQGRGGQGVITFKLNE--KVGHLTALLAVDGDEDL 756

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++S  G  IR  V  I   SR T GV + + A  + + S   I+  +
Sbjct: 757 LVLSRGGLAIRTRVRTISQYSRPTSGVKVMNLAAGDEIASAFVIKPHD 804



 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/274 (17%), Positives = 96/274 (35%), Gaps = 61/274 (22%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETCTQE 693
           F  ++   +   V+  T  G ++R  L D+    R G    A +    DE   V      
Sbjct: 487 FNPEDLIEDEPMVITMTAAGFLKRTPLEDYRAQGRGGMGAKAGRTKDEDEATRVFVAQMH 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGI-SLAKGDQVISMAIVLHADADYDE 750
           +D+L  T  G+  R  +  +     R + G  V+    L +G+++ ++  +         
Sbjct: 547 DDLLFFTNRGRVYREKVFELPEAQ-RTARGTHVKSFLPLEEGEEIKALLSLRSL------ 599

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                           + +  + KG  K
Sbjct: 600 --------------------------------------------TDPGYFVFATRKGVVK 615

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +T+  D+   N +  G+ A ++ +      LV V       Q+++ +  G  IR P++E+
Sbjct: 616 KTAIRDY--QNLNASGLIAINLVEG---DDLVDVRIAGSGAQVVMATRGGKAIRFPLDEV 670

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           R   RA++GV      + + VVS+  + +    D
Sbjct: 671 RATGRASQGVRGIRLKEGDEVVSLIVVPKDWEGD 704


>gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
 gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108]
          Length = 871

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/909 (39%), Positives = 542/909 (59%), Gaps = 86/909 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+PTHNL EV+DGC A IDNP+ID + LM  I+ PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+R  + IE      ++IV++EIPY VNKA ++E IA+LV+E R+  I++  DES RQ
Sbjct: 243 RIVLRAKAEIESDES-HDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+V+LN+L++ T LQS FSVN +AL   +P   TL   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRTK+ L KA++RAH+L GL IA  N+DEVV+IIR S  P  A+R L +R      
Sbjct: 362 DVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  + +  E   L   I  
Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIAR 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL  VK++    RRT I+    +   ED    + +V+TVSHLG
Sbjct: 456 LQLILDDPEECKRVMKAELEEVKEKFGDERRTEIIPDEHEFNAEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +  Q RGG G  G   RD+DF   ++  + H ++LFF+  G  +  K + +
Sbjct: 516 YIKRTPLSEFHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L+++  + +   +      D     N ++VFATK+G V++  L  
Sbjct: 576 PEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHFIVFATKNGTVKKTSLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+ +   DE++ V     +N +++  + G+ V F  + +R   GR + GV
Sbjct: 636 YSRPRTNGVNAITIAEGDEVVDVRLTNGKNQLIMANRNGRAVYFDENTVRTM-GRTATGV 694

Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L  GD  V+ M +V + +                                      
Sbjct: 695 RGMRLDGGDDAVVGMIVVNNPET------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA
Sbjct: 718 --------------ETVMVVSETGYGKRSIVSDYRQTNRGGKGVKTLNIT--DKTGKLVA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D++ +++++  G  IR+ V   R+  RAT+GV + +   K++ + SV +++ S+ 
Sbjct: 762 IKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSDK 821

Query: 903 VDE-AESTE 910
            D+  E+ E
Sbjct: 822 EDDLNENDE 830


>gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
 gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri
           ES114]
          Length = 878

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/893 (42%), Positives = 543/893 (60%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N +I +D LM  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLTEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ANIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I+ EL+ V+D     RRT I   + D++ ED I +ED+VVT+S  
Sbjct: 486 ELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDVVVTLSRE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DEDF+  L + +TH ++L FS+ G  Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRGKAYSLKVFQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPQASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V   +++  I + T  G   +  +     FA   + G+ 
Sbjct: 636 ---------------------VSEYSEDKFIFMATGDGTVKKTSLDQ---FAKVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D +I + I    D   +  +        +           T+           
Sbjct: 672 AVNLREDDSLIGVDI---TDGSSEIMLFSKAGKVVRFNEEQVRGMGRTASGVRGMKLSGE 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++   +R+ +G+ +  VS+ N  G++V   
Sbjct: 729 DQVVSLIVPSNEGDILTVTQNGYGKRTVLSEYPAKSRATQGVVSIKVSERN--GSVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              D D+ ++++D GTL+R  V+E+    R T+GV +  T+++E VV+++RI 
Sbjct: 787 QAEDGDEFMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTSENENVVALQRID 839



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 6/167 (3%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +L   A+    +   + +    R       ++   +  + +   I +   ++L  +E  
Sbjct: 479 ALLDEIAELMHILASTERLMEVIRDELVMVRDMYGDERRTEIGAAIHDIDMEDLITQEDV 538

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ K     D+    R GKG  AT +   + I  L      N +D I+  S +
Sbjct: 539 VVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERL---LVANTHDNILCFSTR 595

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           G    + V ++  ASR  +G   V I    + ER+ ++  + E    
Sbjct: 596 GKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSED 642



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/424 (13%), Positives = 147/424 (34%), Gaps = 38/424 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L++ +     +  L   +A+ + ++ +IR     E      M      ++I   I  ID 
Sbjct: 474 LDEYKALLDEIAELMHILASTERLMEVIRD----ELVMVRDMYGDERRTEIGAAIHDIDM 529

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNELNSLGIEIKECLDILSSR 494
                  D  + LS       ++ ++       R     ++       +  E L + ++ 
Sbjct: 530 EDLITQEDVVVTLS---REGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTH 586

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542
             +L    +           P+ +R   G   +        E +   +            
Sbjct: 587 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 646

Query: 543 --SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VK+  L  +   R  G     V +R++D +  + I    + ++ FS  G V +
Sbjct: 647 MATGDGTVKKTSLDQFAKVRANG--LIAVNLREDDSLIGVDITDGSSEIMLFSKAGKVVR 704

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
               ++      A   + +  + L+  +++ +++         N   ++  T++G  +R 
Sbjct: 705 FNEEQVRGMGRTA---SGVRGMKLSGEDQVVSLI------VPSNEGDILTVTQNGYGKRT 755

Query: 661 KLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            LS++   +R+ +  + +        ++        ++ ++ T  G  VR  +S +    
Sbjct: 756 VLSEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITDAGTLVRTRVSEV-SQV 814

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN+ GV  I  ++ + V+++  +   +          +   A     + D  +  +   
Sbjct: 815 GRNTQGVTLIRTSENENVVALQRIDEVEEAEIIEGEEGEVTEATVTTEATDAPQADTDAE 874

Query: 778 DSSV 781
            +  
Sbjct: 875 STEE 878


>gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 870

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/898 (42%), Positives = 539/898 (60%), Gaps = 69/898 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V++ DEMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK 
Sbjct: 3   EFAKEIFPVNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YDA+ RMAQ +S+R +L +GQGNFGS+DGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL D+ K+TVDF  NYDGS  EP VL +++PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMARIAAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++ CVA+ID+P+I ++ LME + GPDFPT  +I G  G++ AY TGRG ++I
Sbjct: 183 PPHNLREVINACVALIDDPEISIEGLMEHVPGPDFPTAGIINGVEGVREAYRTGRGRVLI 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  SH+E   G + E IVVTE+PYQVNKA + EKIAELV+EKRI  I++LRDESD+ G R
Sbjct: 243 RARSHVEPLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG  A+V+LN LY +T +Q++F +N+VAL   +P+   L  +L++F+  R EVV
Sbjct: 303 LVIELKRGEMAEVVLNHLYMHTQMQNVFGINIVALVDGQPKVLDLRQVLESFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR +PNP  A+  L+ RSW    + D
Sbjct: 363 TRRTIFDLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSD 422

Query: 430 LIDLIDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++D    S+             D    LSE Q +AIL+LRL RLTGL +D I +E   L 
Sbjct: 423 MLDRAGASASRPEDLAADYGVGDDGYRLSEAQAQAILDLRLHRLTGLEQDKILDEYRELL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I++ LDIL S  RL   I+ ELL+V ++    RR+ I E   ++  ED I  ED+VVT
Sbjct: 483 DLIEDLLDILGSGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  P++ YRAQRRGG+G++    ++EDFV  L + +TH +VL FSS G VY  
Sbjct: 543 LSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVYWL 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP GS  +RGK ++N+L L   ERI                               
Sbjct: 603 KVYELPQGSRASRGKPIVNLLPLEADERINA----------------------------- 633

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                                 IL V     ++ + + T  G   + P++    F+ R S
Sbjct: 634 ----------------------ILPVREYDPDHYVFMVTARGTVKKTPLTD---FSRRRS 668

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+  + L   D ++ +++         + +       A R   +       +      V
Sbjct: 669 TGIIAVDLRDDDYLVDVSLTD----GQMDVMLVTTAGKAVRFSENDVRPMGRTACGVRGV 724

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                      L + E   L  +E G+GKRT   +F +  R G+G+        N  G L
Sbjct: 725 RMESDHRVIALLNVAEGAALLATENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRN--GPL 782

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V    V ++D+ +L++  GTL+R PV++I +  R T+GV +    + ER+V + R+ +
Sbjct: 783 VGAARVLEDDEAMLITTGGTLVRTPVDQIPLIGRNTQGVRLIRLDEGERLVELARVEK 840



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 100/244 (40%), Gaps = 16/244 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V  V+  G VK+ PL+ +  +R  G     V +RD+D++ D+ +      V+  
Sbjct: 640 YDPDHYVFMVTARGTVKKTPLTDFSRRRSTG--IIAVDLRDDDYLVDVSLTDGQMDVMLV 697

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G   +     +      A G   +  + +    R+  ++   E  +       + AT
Sbjct: 698 TTAGKAVRFSENDVRPMGRTACG---VRGVRMESDHRVIALLNVAEGAA-------LLAT 747

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +  +F    R G+  + + +       +      ++++ +L T  G  VR P
Sbjct: 748 ENGYGKRTRFDEFPVHRRGGQGVIGIQTEGRNGPLVGAARVLEDDEAMLITTGGTLVRTP 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  I    GRN+ GVR I L +G++++ +A V     + ++          +    + D 
Sbjct: 808 VDQI-PLIGRNTQGVRLIRLDEGERLVELARVEKLQGEDEDLDDDSDSEDDESTQNTMDN 866

Query: 770 EEIT 773
            +  
Sbjct: 867 GDPE 870



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             + +  + R       E    +  S +    +    ++L  +E  ++T+S  G+ K   
Sbjct: 494 SGERLQQEIRNELLAVAEQFGDERRSEIRERQANLTLEDLIGEEDVVVTLSHAGYVKYQP 553

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             D+R   R G+G  A    + + +  L      N +D ++  S +G +  + V E+   
Sbjct: 554 VADYRAQRRGGRGKAAASFKEEDFVDRL---LVANTHDTVLCFSSRGRVYWLKVYELPQG 610

Query: 874 SRATKGVVIFS---TAKDERVVSVERIRESEIV 903
           SRA++G  I +      DER+ ++  +RE +  
Sbjct: 611 SRASRGKPIVNLLPLEADERINAILPVREYDPD 643


>gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
 gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50]
          Length = 849

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/904 (40%), Positives = 536/904 (59%), Gaps = 92/904 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D++    I+ V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    
Sbjct: 2   DDDKIFDKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IYDAL ++AQDW+ R  L++G GNFGS DGD  AA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL EV+   V +IDN      +  +D +M+II+GPDFP GA ILG  GIK AY 
Sbjct: 182 TNIPPHNLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHRGIKEAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V+ IE     + +IVVTE+PY VNKA +++KI ELV+ KR+  I D+RDE
Sbjct: 242 TGRGKIKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R+G RVVIELK+  +A+V+LNQLY++T LQ  F VNM+AL    P+   +  +L  ++
Sbjct: 302 SSREGIRVVIELKKDTNANVLLNQLYKHTQLQDTFGVNMLALVDGVPKILNISQMLGYYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+  L++R  
Sbjct: 362 KHQEDVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIER-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E+Q +AI+++RL  LTGL R+ +  E   L  
Sbjct: 420 ------------------------FGLTEIQAQAIVDMRLRALTGLEREKLEAEYKELMD 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I     IL+   +LLG+IK ELL +  +    RRT +   + ++ DE+ I RE++V+T+
Sbjct: 456 KISYLKAILADEKKLLGVIKDELLVISQKYGDERRTALGRDVDEVTDEELIERENIVITM 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LGY+KR+P  +++AQ RGGKG  G+   DED++  + + +TH  ++FF++ G VY+ K
Sbjct: 516 TKLGYIKRMPEDIFKAQNRGGKGIRGMQTIDEDYIESMIVTTTHNYLMFFTNTGRVYRLK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P     ARG A++N+L L  GE+IT ++P    E   +  Y+  AT++G V++  +
Sbjct: 576 GYEIPEAGRTARGVAIVNLLQLQAGEKITAVIPLKSYE---DGKYLFMATRNGMVKKTDI 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S++  + ++G  A+ L   DE++ V+    E+DI L TK G  +RF    +R   GR S+
Sbjct: 633 SEYQNVRKTGLTAIVLRDNDELIEVKATNGEDDIFLITKKGMTIRFNEKNVRQ-TGRTSM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI L K D VISM +    +                                     
Sbjct: 692 GVKGIHLGKDDIVISMQMSSQGEK------------------------------------ 715

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            IL V+E G GKRT   +F + NR GKG++   ++  ++ G LV
Sbjct: 716 -----------------ILLVTENGMGKRTLISEFNVQNRGGKGVKCYKIT--DKTGDLV 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRES 900
               V D + I++++ +G +IR     I    R T GV + +     + +V S+  +++ 
Sbjct: 757 GAKIVTDENDIMIITTEGIIIRTSCEGISTLGRVTSGVKVINLNYDNNVKVASMTEVQKE 816

Query: 901 EIVD 904
           E  D
Sbjct: 817 EFDD 820


>gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
 gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469]
          Length = 901

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/887 (40%), Positives = 540/887 (60%), Gaps = 87/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A
Sbjct: 52  LKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSA 111

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL
Sbjct: 112 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 171

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A  +L +L K+TVD +PNYD S  EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 172 TRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 231

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV D    +IDNP++  + LM ++ GPDFPTG +I+G  GIK+AY TGRGSI +R   H
Sbjct: 232 GEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 291

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+    R+++VVTEIPYQVNK  + EKIA+ V EK+I  I+D+RDES+R+G R+VI+LK
Sbjct: 292 VEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 351

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A   V+LN LY+ T LQS F +  +AL    P   +L  IL+ ++  + +VV RRT++
Sbjct: 352 RDAVPQVVLNNLYKKTQLQSNFGIIDLALVDGVPRTLSLREILRHYIDHQIDVVRRRTEF 411

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA+ R H+L GL  AV N+DE+V IIR S +   A++ + +R               
Sbjct: 412 DLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNER--------------- 456

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L E+Q  AIL++RL RLTGL R D+ +E++ L ++I    D+L+   
Sbjct: 457 -----------FGLDEIQGEAILQMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEE 505

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L +I  EL  + +     RRT+I E  +   + ED I  EDMVVTV+H GYVKRVP+ 
Sbjct: 506 KILAVIADELREISNRYADKRRTQISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 565

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q+RGGKG  GV +++ DFV +LF+ STH  VLFF++LG VY+ KV  LP+GS   +
Sbjct: 566 IYRSQKRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTK 625

Query: 615 GKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           G A+IN++  L +GE++  ++   +      + Y++FATK G V++  +S++ +  + G 
Sbjct: 626 GSAIINVIETLAEGEKVKAVITTRDFP---EDNYLMFATKQGMVKKTAMSEYDRTRKDGL 682

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+++V      + ++L +  G+ + F  +  R   GR + GVRGI+L    
Sbjct: 683 IAINLKDGDELVNVRRVHPGDKVVLCSSDGKAILFDEAEARSM-GRGTSGVRGITLKGNA 741

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++ M I                                                     
Sbjct: 742 TMLGMEITNGNGD----------------------------------------------- 754

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +  ++EKG+GKRT+  ++ +  R G+G+    +++  + G LVA   V    +I
Sbjct: 755 ------LFVITEKGYGKRTAISEYPVHKRGGQGVFTITMTE--KKGNLVACRVVGPQHEI 806

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++S++G +IRV   +I    R+T+GV + + +  + V +V R+  +
Sbjct: 807 MIMSEEGVVIRVKAGDISKLGRSTQGVKVMNLSGSDVVSAVARMVAN 853



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 103/254 (40%), Gaps = 16/254 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              ++ ++  +  G VK+  +S Y   R+ G     + ++D D + ++  V     V+  
Sbjct: 651 FPEDNYLMFATKQGMVKKTAMSEYDRTRKDG--LIAINLKDGDELVNVRRVHPGDKVVLC 708

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G   K  ++         RG + +  ++L     +  +      E +  N  +   T
Sbjct: 709 SSDG---KAILFDEAEARSMGRGTSGVRGITLKGNATMLGM------EITNGNGDLFVIT 759

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  +S++    R G+    +   + +  +++      +++I++ ++ G  +R  
Sbjct: 760 EKGYGKRTAISEYPVHKRGGQGVFTITMTEKKGNLVACRVVGPQHEIMIMSEEGVVIRVK 819

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              I    GR++ GV+ ++L+  D V+S    + A+     +    + M       + D 
Sbjct: 820 AGDI-SKLGRSTQGVKVMNLSGSD-VVSAVARMVANKKKAPKHAENQGMLDLMSAGARDA 877

Query: 770 EEITSLKNDSSVEG 783
           +E  S+      E 
Sbjct: 878 DEAESVDLGDEEEA 891



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 95/280 (33%), Gaps = 70/280 (25%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLAKGDQVI 736
           DEI+ +   +Q++      K     RF +  I+         R   G     LA+ D V 
Sbjct: 434 DEIVHIIRSSQDD---AEAKKRMNERFGLDEIQGEAILQMRLRRLTG-----LARQDLVD 485

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKL 795
            ++ +    A Y++ + + + + A       +     + K  + +     +    E L  
Sbjct: 486 EISQLRLDIAYYEDLLAHEEKILAVIADELREISNRYADKRRTQISEQDIQNLDVEDLIA 545

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGK------------------------------ 825
           +E  ++TV+  G+ KR     +R   R GK                              
Sbjct: 546 EEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFVENLFVASTHDYVLFFTN 605

Query: 826 --------------GIRATD----------VSKINEIGALVAVFPVNDNDQIILVSDKGT 861
                         G R T           +++  ++ A++      +++ ++  + +G 
Sbjct: 606 LGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGEKVKAVITTRDFPEDNYLMFATKQGM 665

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +  ++E     +   G++  +    + +V+V R+   +
Sbjct: 666 VKKTAMSEYDRTRKD--GLIAINLKDGDELVNVRRVHPGD 703


>gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
 gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122]
          Length = 818

 Score =  852 bits (2201), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/903 (38%), Positives = 543/903 (60%), Gaps = 87/903 (9%)

Query: 1   MTEHIISSDEEEEK-GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+++ I ++ +    G+    +  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G+   + + K AR  G+V+GKYHPHG++A+YD + R+AQD+S+R+ L++G GNFGS
Sbjct: 61  MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE RL K A  LL DL K+TVD++PNYD S QEPVVL AR+PN+LVNG 
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    ++DNPD+ +D LM++I GPDFPTG +I+GR GIK+
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIMGRKGIKD 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ +R    I ++   ++ IV+TEIPYQVN+  +++KI ELVR+K++ +I+++
Sbjct: 241 AYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISNV 300

Query: 300 RDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR     ++I+LK  A   V+LN+LY++T LQ  F V  +AL    P   +L  +L
Sbjct: 301 HDGADRNSPVDIIIDLKSNAIPQVVLNKLYKHTQLQVGFGVINLALVDGVPRTLSLREML 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  +E+V+VRRT++ L KA +RAH+L GL IA+ N+DEV++IIR S     A   L 
Sbjct: 361 RHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASERLQ 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            LSE QT AILE+RL RLTGL R  + +EL 
Sbjct: 421 ER--------------------------FNLSEAQTAAILEMRLRRLTGLERHKLEDELA 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I     ILS  S +  +IK+ELL +K   +TPRRT +     D++ ED I  E++
Sbjct: 455 ELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDVEDLIADEEV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            VTV+  GYVKR+P+S YR Q+RGGKG  GV +++ DFV  LF+ STH+ +LFFS+ G V
Sbjct: 515 AVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ KV+ +P  S  ARG A++N+L L +GE I  ++   +      + Y++F T+ G V+
Sbjct: 575 YRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFP---EDEYLMFGTEQGMVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  ++ + +  R G IA+ L   D++++V       D+++ +  G+ +++    +R   G
Sbjct: 632 KTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDVIMVSSAGKAIKWNEGEVRSM-G 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+++GVRG+++    +V+ + I                                      
Sbjct: 691 RDTMGVRGMTVPANTKVLGLEIARPDTD-------------------------------- 718

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L ++E G+GKRT   ++   +R G+G+    ++   + 
Sbjct: 719 ---------------------LLVITENGYGKRTPVSEYPSHHRGGQGVFTIVMTA--KK 755

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L A+  V ++D+++++S+ G +IR    ++    RAT+GV + + A  ++V +V    
Sbjct: 756 GNLSAMKVVAESDELMIISESGIIIRTKAADVSELGRATQGVRVMNVANKDKVTAVAIST 815

Query: 899 ESE 901
           E +
Sbjct: 816 EDD 818



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 99/287 (34%), Gaps = 70/287 (24%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-----IRVFAGRNSVGVRGISLA 730
           + LD+ DE++ +   +Q +            RF +S      I     R   G+    L 
Sbjct: 394 IALDNIDEVIKIIRGSQTD---REASERLQERFNLSEAQTAAILEMRLRRLTGLERHKLE 450

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                  +A +    A Y   +     +    +    + +   +    +++ G   +   
Sbjct: 451 DE-----LAELKEKIAYYKRILSDESLVREVIKEELLEIKGRFNTPRRTTLCGEAEDIDV 505

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E+  +TV++ G+ KR     +R   R GKG++  ++ + + +  L   F  + +
Sbjct: 506 EDLIADEEVAVTVTKAGYVKRIPVSAYRQQKRGGKGMQGVNLKENDFVEHL---FVASTH 562

Query: 851 DQIILVSDKGTLIRVPVNEIRIAS---RAT------------------------------ 877
             ++  S  G + R+ V EI  AS   R T                              
Sbjct: 563 SYMLFFSTAGKVYRLKVYEIPEASRHARGTAIVNLLPLVKGESIAAVIATKDFPEDEYLM 622

Query: 878 ----KG-VV----------------IFSTAKDERVVSVERIRESEIV 903
               +G V                   +  +D+++++V R++  E V
Sbjct: 623 FGTEQGMVKKTSMNLYDRTRRDGLIAINLKEDDQLIAVRRVKSGEDV 669


>gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT]
 gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT]
          Length = 796

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/882 (41%), Positives = 538/882 (60%), Gaps = 89/882 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V +T+EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M + GV +++ Y K AR
Sbjct: 4   IDVDVTEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSAR 63

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMGKYHPHG+ AIYD + RMAQD+S+R  LI+GQGNFGSVDGDPPAA RYTE RL 
Sbjct: 64  IVGDVMGKYHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLS 123

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  +L D+ KDTVDF PNYDGS +EP VL +R PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 124 KIAGEMLADIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLR 183

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVV   + +I+NPD  +  LM  IRGPDFPTG  I+GR+GI++AY+TGRG+I IR  S I
Sbjct: 184 EVVYALIHLIENPDASVTDLMNFIRGPDFPTGGYIVGRSGIESAYSTGRGTITIRARSEI 243

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+      +I+ TE+PYQVNKA ++E IAELV+  R+  I+++RDESDR+G R+V+ELK+
Sbjct: 244 EEGRRG-SRIIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELKQ 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G +  V+LNQL+++T L++ + +  + L   +P   TL   L+ ++ +R EV+ RRT++ 
Sbjct: 303 GVNPQVVLNQLHKHTQLETTYGIINLVLVDGQPRTLTLKETLEQYINYRAEVIERRTRFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L +A  RAH+L G+ IA+ ++DEV+ +IR SP+P  AR  LM R                
Sbjct: 363 LEQAEKRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNR---------------- 406

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q RAIL++RL RLTGL ++ + +E   L   I     IL+SR+ 
Sbjct: 407 ----------FGLSEEQARAILDMRLQRLTGLEQEKVASEARELESTIARLKGILASRTE 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +L IIK EL  + +     RRT I+E +  +  ED I  E++ V +++ GY+KR PLSVY
Sbjct: 457 VLDIIKNELRELDEIYGDDRRTEILESVESVRPEDLIQDEEVAVIITNNGYIKRQPLSVY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGGKG  G   + EDFVTD+F  ST   ++ F+  G  +  +V+ +P+ S  ARG+
Sbjct: 517 RMQRRGGKGSIGAETKSEDFVTDIFTASTLDYLMIFTDRGKAHWLRVYEIPMVSKVARGR 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + ++L L + ERIT  +P     +   + Y+V AT++G++ +  L  F    R G  A+
Sbjct: 577 PIASLLQLEENERITEAIPVESFGT---DEYIVLATRNGSIVKTPLRAFSNPRRGGIKAV 633

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D +++        ++++ TK G+ +RF  S +R  +GR S+GV+ I+L++GD++I
Sbjct: 634 NLR-GDSLVAARLTDGSRELIVATKKGKAIRFHESDVRS-SGRGSMGVKAINLSEGDELI 691

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           SM +V   +                                                   
Sbjct: 692 SMDVVKEGET-------------------------------------------------- 701

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              + T++ +G+GKRT   ++ +  R GKG++  D       G +VA   V+D+D +++ 
Sbjct: 702 ---LFTITTQGYGKRTELSEYPLQRRGGKGVKNIDT----RRGDVVAAITVSDDDGLLIT 754

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + +G +IR+  +++R+  RAT+GV I      + +  V R+ 
Sbjct: 755 TKEGVMIRIAASDVRVQGRATQGVKIMDVKPGDEISDVARVD 796



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 81/216 (37%), Gaps = 10/216 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHAD 745
               E   ++ T  G   R P+S  R    R   G  G      D V      + + +  
Sbjct: 492 LIQDEEVAVIITNNGYIKRQPLSVYR-MQRRGGKGSIGAETKSEDFVTDIFTASTLDYLM 550

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              D    +   +     +         +          I+E    E    +++I+  + 
Sbjct: 551 IFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVESFGTDEYIVLATR 610

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G   +T    F    R   GI+A ++       +LVA    + + ++I+ + KG  IR 
Sbjct: 611 NGSIVKTPLRAFSNPRRG--GIKAVNL----RGDSLVAARLTDGSRELIVATKKGKAIRF 664

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             +++R + R + GV   + ++ + ++S++ ++E E
Sbjct: 665 HESDVRSSGRGSMGVKAINLSEGDELISMDVVKEGE 700



 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 103/272 (37%), Gaps = 14/272 (5%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
               ++   +    V  T +G ++R  LS +    R   G I  +  S D +  + T + 
Sbjct: 486 SVRPEDLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETKSEDFVTDIFTAST 545

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI----SLAKGDQVISMAIVLHADADY 748
            + +++ T  G+     +  I     + + G R I     L + +++     V     D 
Sbjct: 546 LDYLMIFTDRGKAHWLRVYEI-PMVSKVARG-RPIASLLQLEENERITEAIPVESFGTDE 603

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
              +        +  L +        +K  +    ++   R  +   +   ++  ++KG 
Sbjct: 604 YIVLATRNGSIVKTPLRAFSNPRRGGIKAVNLRGDSLVAARLTDGSRE---LIVATKKGK 660

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
             R    D R S R   G++A ++S+      L+++  V + + +  ++ +G   R  ++
Sbjct: 661 AIRFHESDVRSSGRGSMGVKAINLSEG---DELISMDVVKEGETLFTITTQGYGKRTELS 717

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           E  +  R  KGV    T + + V ++    + 
Sbjct: 718 EYPLQRRGGKGVKNIDTRRGDVVAAITVSDDD 749



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 91/237 (38%), Gaps = 15/237 (6%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731
           I + L   DE++++   +         +     RF +S  +    R  + +R   L   +
Sbjct: 376 ILIALRDIDEVIALIRGSPS---PSDARNLLMNRFGLSEEQA---RAILDMRLQRLTGLE 429

Query: 732 GDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            ++V S A  +    A     +     +    +    + +EI      + +  ++   R 
Sbjct: 430 QEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDDRRTEILESVESVRP 489

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E+  + ++  G+ KR     +R+  R GKG    +    +    +  +F  +  
Sbjct: 490 EDLIQDEEVAVIITNNGYIKRQPLSVYRMQRRGGKGSIGAETKSEDF---VTDIFTASTL 546

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D +++ +D+G    + V EI + S+  +G     +    ++ER+     +      +
Sbjct: 547 DYLMIFTDRGKAHWLRVYEIPMVSKVARGRPIASLLQLEENERITEAIPVESFGTDE 603


>gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
 gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC
           49176]
          Length = 832

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/908 (39%), Positives = 541/908 (59%), Gaps = 91/908 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     I  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M ++    +
Sbjct: 2   DENIFDRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ WS R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++    +IDN      D D+D +++I++GPDFPTGA ILGR GI+ AY T
Sbjct: 182 NIPPHNLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHILGRAGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I++R V+ IE  +  + +IVVTE+PY VNKA ++E IA++V+ KRI  I +LRDES
Sbjct: 242 GRGKIIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R G R+ IEL+R  +  +IL +LY++T LQ+ F  NM+ L   +P    L  +L  ++ 
Sbjct: 302 NRNGMRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGLVNNEPVVMNLKQMLGFYLE 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E VV RR++Y LNKA +RAH+L GL +A+  +DEV+ IIR S     A+ +L+     
Sbjct: 362 HQENVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLI----- 416

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                G   L +VQ +AI+++RL  LTGL R+ ++ E +SL   
Sbjct: 417 ---------------------GRFSLDDVQAQAIVDMRLRALTGLEREKLQGEYDSLQER 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IKE  +IL    +LLG+IK+E+  ++D+    RR++IV    D+ ++D I  E+ V+ ++
Sbjct: 456 IKELKEILGDIKKLLGVIKEEINVIRDKYGDERRSQIVADDSDITNDDLIPDENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           ++GY+KR+    +++Q RGGKG  G+   +EDF+ DL + +TH  +LFF++ G VY+ K 
Sbjct: 516 NMGYIKRMTTDNFKSQNRGGKGIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P  S  ARG A++N+L L   E++  ++   ++++   + Y+  ATK G V++  LS
Sbjct: 576 YQIPEASRTARGTAMVNLLQLQPDEQVKAVINIRKEKT---DGYLFMATKRGIVKKTALS 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I ++G  A+ L   D+++ V+    ENDI L TK G C+RF    +R   GR S+G
Sbjct: 633 EYANIRKTGLQAINLREDDDLIEVKLTNNENDIFLVTKNGMCIRFNEKDVRP-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+++   D++++M                                             
Sbjct: 692 VIGMTIDDTDEIVAM--------------------------------------------- 706

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L  +   +L VSE G GKRT   +F   +R GKG++   + +  + G ++ 
Sbjct: 707 --------QLDTQGAKLLIVSENGLGKRTEISEFTTQHRGGKGVKCYKIVE--KTGLVIG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-I 902
              VNDN++I+L++  G +IR+ V  I    R T GV + +   D  +  + ++RE +  
Sbjct: 757 AKSVNDNNEIMLITKAGIIIRMAVESISTLGRITSGVKLMNVDGDNVIAKIAKVREDDKA 816

Query: 903 VDEAESTE 910
             E E+TE
Sbjct: 817 AAEEETTE 824


>gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
 gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1]
          Length = 826

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/906 (39%), Positives = 544/906 (60%), Gaps = 86/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHFLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRT++ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DILS   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILSKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRAAKGLPVVNLLQLEKGEKVQTVINIPEGA---DDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   I+                                           
Sbjct: 691 RGINLREHDYVVGSGIL------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 708 ----------GADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             +N N+ +++++  G +IR  ++++    R+T GV +   + D +V S+  +   E  D
Sbjct: 756 TIINSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQD 815

Query: 905 EAESTE 910
           +    +
Sbjct: 816 QTGDDD 821


>gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
 gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016]
          Length = 807

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/890 (40%), Positives = 539/890 (60%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +  + I+ EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y
Sbjct: 4   DEGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+V+GKYHPHG++++YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K    +L  + K+TVDF PN+DG  +EPVVL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G + +I+NP++ +  LM  I+GPDFPT  +I+G +GIK+AY TGRG I++R
Sbjct: 184 PHNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGTSGIKSAYETGRGKIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    + +IV+TEIPYQVNK+ ++E +A+LV+ KRI  I+D+RDESDR G R+V
Sbjct: 244 AKTEIQEEK-GKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR A+A++ LNQLY++T +Q  F V M+ L   +P+   L  +L  ++ F+EE++ R
Sbjct: 303 VELKRDANANITLNQLYKHTRMQDTFGVIMLTLVDNEPKVLNLKQMLVHYLKFQEEILTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L+KA  RAH+L GL IA+  +DEV+ +IR S   E AR  L+ +           
Sbjct: 363 RTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q +AIL++RL RLTGL R+ I NE N L   IK   +IL
Sbjct: 412 ---------------FNLSEKQAQAILDMRLQRLTGLEREKIENEYNELMDIIKHLKEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            ++S LL +IK EL+ ++D+    RRT I     D+  ED I  E++V+T++H GY+KR+
Sbjct: 457 ENKSILLNMIKDELIEIRDKYGDERRTEIQISNDDINIEDLIEEEEVVITLTHAGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y +QRRGGKG   +  +++DFV  +FI STH+ +LFF++ G VYK K + +P    
Sbjct: 517 SADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKLKGYEIPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+N+L L+  E+I  ++ F E     ++ Y + ATK G V++ +++ +  I ++
Sbjct: 577 TAKGTNLVNLLPLDGDEQIQAVISFKE---IDDDNYFIMATKRGLVKKTEINQYASIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G  A+ L   DE++ V+  T ++++L+ TK G  +RF    +R   GRN+ GV+ I+L K
Sbjct: 634 GLNAINLRDGDELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRP-TGRNTTGVKAITLRK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D  ++M I  + +             +                                
Sbjct: 693 KDIAVAMDIASNKEDILVVSENGFGKRTP------------------------------- 721

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                      V+E           + I  R GKGI     ++  + G +V    V D D
Sbjct: 722 -----------VTE-----------YTIHKRGGKGIITYKSTE--KTGLIVGARVVKDED 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++L++     IR+ V++I   SR   GV +  T +++RVV++ +I  +E
Sbjct: 758 EMMLINSSNVAIRLNVSDISTTSRNAMGVTLMRTEEEQRVVAIAKINCTE 807



 Score = 97.6 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 84/260 (32%), Gaps = 59/260 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  T  G ++R     +    R   G  AM     D +  +   +  + IL  T  G+ 
Sbjct: 504 VITLTHAGYIKRISADTYSSQRRGGKGIQAMTTKEDDFVEHIFITSTHSHILFFTNKGKV 563

Query: 706 VRFPISAIRVFAGRNSVGVRGISLA--KGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +     I   AGR + G   ++L    GD+ I   I      D                
Sbjct: 564 YKLKGYEI-PDAGRTAKGTNLVNLLPLDGDEQIQAVISFKEIDD---------------- 606

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            + + +  +++G  K+T    +    ++
Sbjct: 607 ---------------------------------DNYFIMATKRGLVKKTEINQYASIRKN 633

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G+ A ++        L+ V     + ++++ +  G  IR    ++R   R T GV   
Sbjct: 634 --GLNAINLRDG---DELIGVKMTTGDSEVLIFTKNGYAIRFSEKDVRPTGRNTTGVKAI 688

Query: 884 STAKDERVVSVERIRESEIV 903
           +  K +  V+++     E +
Sbjct: 689 TLRKKDIAVAMDIASNKEDI 708


>gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341]
 gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341]
          Length = 815

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/898 (41%), Positives = 552/898 (61%), Gaps = 85/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTG+ +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+IV+TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+ +         
Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++RL RLTGL RD I  E + L   I +  D
Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K ELL VK++    RR+ I+E  +  +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   +         ++F+TK+G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEGTSLIFSTKYGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V  +                                            
Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + EI +E 
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEEE 815


>gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
 gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae
           DSM 15606]
          Length = 867

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/907 (40%), Positives = 545/907 (60%), Gaps = 85/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDNDRILRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGS+DGD PA
Sbjct: 63  SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+PTHNL EV++GC A IDNPDIDLD LM+ I+ PDFPTGA I G  G++ AY TGRG
Sbjct: 183 ATNMPTHNLSEVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIYGIQGVRQAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E RI  I++  DES RQ
Sbjct: 243 RIVMRAKAEIESGES-HDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI++KR A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRTKY L KA++RAH+L GL IA  N+DEVV IIR S  P  A+R L QR      
Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  D +  E   L  +I  
Sbjct: 416 --------------------FNLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAY 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL  VK++    RRT I     +   ED    + +V+TVSH+G
Sbjct: 456 LQQILDDPELCKKVMKDELNEVKEKYGDERRTEIKYSSEEFNPEDFYPNDPVVITVSHMG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +R Q RGG G      R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSEFREQARGGVGAKAARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L++   + I  I+      DES  N+ YV+FATK+G V++  L  
Sbjct: 576 PEGDRNSKGRAIQNMLNIESDDAINAILRLTTLTDESFNNSHYVIFATKNGTVKKTSLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ +   DE++ V      N++++  + G+ VRF  + IR   GR + GV
Sbjct: 636 YSRPRANGVIAINIVDGDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTM-GRTATGV 694

Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L  G D+V+ M  V  A++                                     
Sbjct: 695 RGMRLDGGDDEVVGMVTVNEAES------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE+G+GKR+   D+R++NR GKG++   +++  + G LV+
Sbjct: 718 --------------ESVMVVSEQGYGKRSQVEDYRVTNRGGKGVKTLAITE--KTGRLVS 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEI 902
           +  V D + +++++  G +IR+ V ++R+  RAT+GV + +   K++ + SV ++  SE+
Sbjct: 762 IKNVTDENDLMIINKSGVVIRLAVADVRVMGRATQGVRLINLAKKNDVIASVCKVMSSEL 821

Query: 903 VDEAEST 909
               E  
Sbjct: 822 EATVEEE 828


>gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA]
          Length = 840

 Score =  852 bits (2200), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/892 (40%), Positives = 554/892 (62%), Gaps = 87/892 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYTE RL+K    ++ 
Sbjct: 61  YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF+ N+D + QEP V+  R PN+LVNG  GIAVGMATN+PTHNL EV+D C+A
Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            IDN DID++ LM+ ++ PDFPTG  I G +G+++AY TGRG +V+R  + IE  +   +
Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIYGISGVRDAYETGRGRVVMRAKAEIETHTT-HD 239

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+V EIPY VNK  ++E IA LV +K+I  I+ + DESDR+G R+VI++KR A+A V+L
Sbjct: 240 KIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVKRDANASVVL 299

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+L++ T+LQ+ F VN +AL   +P+   L  +++ FV  R +VV+RRT+Y L KA++RA
Sbjct: 300 NKLFKMTALQTSFGVNNIALVHGRPKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQERA 359

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA  N+DEV+RIIR +  P  A   L++R                        
Sbjct: 360 HILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER------------------------ 395

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE+Q RAI+E+RL +LTGL +D +  E   +  +I    +ILS+      +IK E
Sbjct: 396 --FNLSEIQARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDE 453

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L+ VK++    RR+ IV    +   ED    + MV+T+SH+GY+KR PLS +RAQ RGG 
Sbjct: 454 LVEVKEKYGDARRSEIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGV 513

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+  A+G+A+ N+L++
Sbjct: 514 GSKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNI 573

Query: 625 NQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +  + +T  +      D    N+ YV+F TK+G +++  L  + +  ++G  A+ +   D
Sbjct: 574 DSDDVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 633

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK--GDQVISMAI 740
           +++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L +  GD+VI M  
Sbjct: 634 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTLDEDGGDEVIGMIC 692

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +   +A                                                   + I
Sbjct: 693 IKDPEA---------------------------------------------------ESI 701

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LVA+  V D + +++++  G
Sbjct: 702 MVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNIT--DKTGKLVAIKSVTDENDLMIINKSG 759

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI-RESEIVDEAESTE 910
             IR+ V E+RI  RAT+GV + +  K ++++ SV ++  E E+ DE  +T+
Sbjct: 760 ITIRLKVAEVRIMGRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTD 811



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 106/251 (42%), Gaps = 12/251 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 598 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDKVIEVRMTNGDNEIIIANRNGR 655

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  + G+ +  ++   +         ++  ++ G  
Sbjct: 656 AIRFHESAVRVMGRTATGVRGMT-LDEDGGDEVIGMICIKD----PEAESIMVVSEQGYG 710

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    L+  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 711 KRSDIEDYRKTNRGGKGVKTLNITDKTGKLVAIKSVTDENDLMIINKSGITIRLKVAEVR 770

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  DQ+ S+  V   +   DE          +         +  
Sbjct: 771 IM-GRATQGVRLINLEKRNDQIGSVCKVTSEEEVTDENSNTDLENITEGESGGTTNSDTN 829

Query: 774 SLKNDSSVEGN 784
           S     +    
Sbjct: 830 SDLTAEANSEE 840


>gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
 gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841]
          Length = 855

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/891 (40%), Positives = 544/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V+I  EM+ SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM ++G   +K Y
Sbjct: 3   DQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++Y AL RMAQ+WS+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RLQ     ++DDL K+TVD   N+D + +EP V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 123 EARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+D CVA IDN DID+D LME ++ PDFPTG  I G  G++ AY TGRG +V+R
Sbjct: 183 THNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIYGMQGVREAYETGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE    + ++IV+TEIPY VNKA ++++IA+LV EK+I  I++  DESDR+G R+V
Sbjct: 243 ARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +++KR A+A+V+LN+L++ T LQ+ FSVN +AL   +P   +L   +  FV  R +VV+R
Sbjct: 302 VDVKRDANANVVLNKLFKMTPLQTSFSVNCIALVKGRPRLLSLKDCISNFVNHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA +RAH+L GL IA  N+DEVV IIR + NP+ A   LM R           
Sbjct: 362 RTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L EVQ +AI+E+RL +LT L ++ +RNE + L  +I+    IL
Sbjct: 411 ---------------FELDEVQAKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S     + +IK EL+ VK++    RR+ IV    +   ED    ++MV+T+SH+GY+KR 
Sbjct: 456 SDEDLCMKVIKDELIEVKEQFGDERRSEIVYSSEEFNPEDFYADDEMVITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H ++LFF+  G  +  KV+ +P G+ 
Sbjct: 516 PLAEFRAQARGGVGSKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + I   +      D     + YVVF TK+G +++  L ++ +  
Sbjct: 576 NSKGRAIQNMLNIDPDDAINVCLRIKNLNDAEFCRSHYVVFCTKNGIIKKTCLQEYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D ++ V     EN+I++  + G+ +RF  S +R   GR + GVRG+++
Sbjct: 636 ANGVNAITIREDDRVIGVRLTNGENEIIIANRNGRAIRFHESKVRAM-GRTATGVRGMTI 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  V                                              
Sbjct: 695 DEDGSDEVVGMVCVNDPQT----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R++NR  KG++  ++++  + G LVA+  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRVTNRGAKGVKTLNITE--KTGKLVAIKVV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++++ SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQISSVCKV 812



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 53/435 (12%), Positives = 145/435 (33%), Gaps = 27/435 (6%)

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++  + +   ++   +      +        +V++        +       +  +++ +
Sbjct: 431 NLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFGDERRSEIVYSSEE 490

Query: 427 IKDLIDLIDDSSYTIGSDGTMY----LSE--VQTRAILELRLARLTGLGRDDIRNELNSL 480
                   DD      S         L+E   Q R  +  +          +        
Sbjct: 491 FNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVGSKGTSTRDTDFVEYIYPATMH 550

Query: 481 GIEIKE-------CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
              +          + +            + + ++ +          +      + E C 
Sbjct: 551 NTMLFFTQKGRCFWMKVYEIPEGAKNSKGRAIQNMLNIDPDDAINVCLRIKNLNDAEFCR 610

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                VV  +  G +K+  L  Y   R  G   + + +R++D V  + + +    ++  +
Sbjct: 611 SH--YVVFCTKNGIIKKTCLQEYSRPRANG--VNAITIREDDRVIGVRLTNGENEIIIAN 666

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +    ++      A G   +  +  +  + +  ++   +         ++  ++
Sbjct: 667 RNGRAIRFHESKVRAMGRTATGVRGMT-IDEDGSDEVVGMVCVND----PQTETIMVVSE 721

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R+ + D+   NR  K    L+      ++++++  T END+++  K G  +R  +
Sbjct: 722 QGYGKRSDIEDYRVTNRGAKGVKTLNITEKTGKLVAIKVVTDENDLMIINKSGITIRLKV 781

Query: 711 SAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + +R+  GR + GVR I+L K  DQ+ S+  V   D + +  +           L     
Sbjct: 782 ADVRIM-GRATQGVRLINLEKRNDQISSVCKVQTEDEEEETEMLSDGVAPVMDELEGSSD 840

Query: 770 EEITSLKNDSSVEGN 784
             ++  +++ +    
Sbjct: 841 ASVSESRDEETETNE 855


>gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
 gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A]
          Length = 854

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/907 (39%), Positives = 547/907 (60%), Gaps = 86/907 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   DNQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNL EV+DGC A IDNP I  + LM+ I  PDFPTGA I G  G+KNAY TGRG
Sbjct: 183 ATNIPTHNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIYGLQGVKNAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE      ++IVVTEIPY VNKA ++E IA+LV+E ++  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIESGET-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A++ILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVNGRPRLLNLQECIKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R      
Sbjct: 362 DVTIRRTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RLA+LTGL  D +  E   L   IK 
Sbjct: 416 --------------------FNLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKN 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL +  R   ++K EL  +K++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILDNPERCKEVMKNELYDIKEKYGDERRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLTDFKEQARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+LSL  G+ +   +     ++E   +  YVVF TK G V++  L  
Sbjct: 576 PEGDKSSKGRAIQNMLSLEPGDAVNAFLRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V      +++++  K G+  RF  + +R   GR S GV
Sbjct: 636 YSRPRNNGVIAININDGDEVVDVRLTNGSDELIIADKNGRACRFHENNVRTM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +   D+VI M +V  ++                                     
Sbjct: 695 RGMKLDEDGEDEVIGMVVVNDSE------------------------------------- 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LV
Sbjct: 718 --------------NETVMVVSEEGYGKRSLVSDYRLTNRGGKGVKTLNITE--KTGKLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESE 901
           A+  V D++ +++++  G +IR+ V+E R+  RAT+GV + + +K  + + SV ++R +E
Sbjct: 762 AIKTVTDDNDLMIINKSGIVIRMAVSECRVMGRATQGVRLINLSKKSDTIASVCKVRSAE 821

Query: 902 IVDEAES 908
           + ++ + 
Sbjct: 822 MEEKVDE 828


>gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
 gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20]
          Length = 851

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/901 (39%), Positives = 541/901 (60%), Gaps = 84/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDTRIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NPD     LM+++ GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R  SA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A++  + EV+
Sbjct: 303 ISIDVRRDTSASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKDILVAYLTHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 ---------------DGYALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+ + R+  II  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T++  GY+
Sbjct: 457 ILAHQERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMLATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L+    E+I  ++    + S   + Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLNFEDDEKIQAVISVRGEASESKD-YLFFVTRLGVVKRTAVSEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       IL+ T+ G  VRF   ++RV  GR++ GVRGI 
Sbjct: 636 RTNGLKALTLHDGDEVLSVQITNGTQSILIATQAGYSVRFAEDSVRVM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI                                                    
Sbjct: 695 LRDNDVVIGA-------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              ++      +L ++EKGFGK+T + ++ I  R GKGI+  +++  N  G L  +  ++
Sbjct: 705 ---DVVTSSDNVLVITEKGFGKQTPASEYPIKGRGGKGIKTANITDKN--GVLAGMTIIH 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I++ + +G +IR   + +    RAT GV +    +  +V ++ ++ + ++ DE  +
Sbjct: 760 GHEDIMVTTTQGVMIRFAADSVSQTGRATLGVRLIRLEEGTKVATLTKVDQEDLPDEIAT 819

Query: 909 T 909
            
Sbjct: 820 D 820


>gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01]
 gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01]
          Length = 805

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/888 (42%), Positives = 529/888 (59%), Gaps = 86/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILFG  Q GV   +K+VK
Sbjct: 2   SQVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+I GEVMGKYHPHG+AAIYDALAR+AQ W+LR  L++GQGNFGS+DGDPPAA+RYTE 
Sbjct: 62  SAKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL      +L D+ K+TVDFRPNYDGS +EP VL +  PN+LVNG  GIAVGMAT++P H
Sbjct: 122 RLSPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD  VA+IDNP I L+ +M  + GPDFPTG  +  R GI+ AYATGRGS+ +R  
Sbjct: 182 NLSEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGKLS-RKGIQEAYATGRGSLKVRAK 240

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+  G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DI  LRDESDRQG R+ IE
Sbjct: 241 VRIEE-KGQRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGAS  V+LNQLY++T+LQ+ F+VN++A+   +P+   L+ +++ ++  R+EVV RR+
Sbjct: 300 LKRGASPQVVLNQLYKHTALQTSFTVNLLAIVNGEPKVLPLLSLMRHYLDHRKEVVRRRS 359

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +RAHVL GL IA+ ++DEV+ +IR S +   AR+ LM+R             
Sbjct: 360 LFDLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMER------------- 406

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q +AIL++RL RL  L R+ +  E   L  EI     IL  
Sbjct: 407 -------------FGLSEIQAQAILDMRLQRLVALEREKLLEEYRELMEEIARLKAILEE 453

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL   +K++LL VK++    RRT I E       ED I  E MV+T++  G++KR+PL
Sbjct: 454 EGRLWAEVKKDLLRVKEKYGDARRTVITEFEDSFNPEDLIEDEPMVITLTAQGFLKRLPL 513

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGGKG      ++ED    +F+   H  +L F++ G VY+ KV+ LP    QA
Sbjct: 514 ESYRAQGRGGKGLIAGKTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQA 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  +  +L L + E +  ++     +      Y+VFAT+ G V+R  L ++  +  +G 
Sbjct: 574 RGVHVKTLLPLAEEEEVAALLSVRGLD---GEGYLVFATERGLVKRTALREYQNLGAAGL 630

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732
           IA++L   D ++ V     E++ +L T+ GQ +RF +  +R   GR+S GV GI   K G
Sbjct: 631 IAIRLLEGDRLIGVALSDPEDEAILATEEGQAIRFALEEVRA-TGRDSQGVTGIRFKKPG 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+  V   +                                               
Sbjct: 690 DRVVSLVTVKPGEMVD-------------------------------------------- 705

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VS +G+GKRT   ++ +  R G G+    VS   ++G L A+  V   + 
Sbjct: 706 -------LLAVSTRGYGKRTPLAEYPLQGRGGMGVITYKVST--KVGRLAALLKVRGTED 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++++S KG  IR PV +IR  SR T GV + +  +D+ VVS   + E 
Sbjct: 757 LLVLSKKGLAIRTPVADIRQYSRDTAGVKVMNLPEDDEVVSAFAVEEE 804



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 105/276 (38%), Gaps = 62/276 (22%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
            F  ++   +   V+  T  G ++R  L  +    R   G IA K    DE + V     
Sbjct: 486 SFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAGKTKEEDEAIQVFVAQA 545

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYD 749
             D+LL T  G+  R  +  +    GR + GV     + LA+ ++V ++  V   D    
Sbjct: 546 HEDLLLFTNRGRVYRLKVYELPEM-GRQARGVHVKTLLPLAEEEEVAALLSVRGLD---- 600

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                          E +++  +E+G  
Sbjct: 601 ----------------------------------------------GEGYLVFATERGLV 614

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KRT+  ++   N    G+ A  + + +    L+ V   +  D+ IL +++G  IR  + E
Sbjct: 615 KRTALREY--QNLGAAGLIAIRLLEGDR---LIGVALSDPEDEAILATEEGQAIRFALEE 669

Query: 870 IRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +R   R ++GV      K  +RVVS+  ++  E+VD
Sbjct: 670 VRATGRDSQGVTGIRFKKPGDRVVSLVTVKPGEMVD 705


>gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch
           sediment']
          Length = 841

 Score =  851 bits (2199), Expect = 0.0,   Method: Composition-based stats.
 Identities = 383/909 (42%), Positives = 556/909 (61%), Gaps = 86/909 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E            +    I +EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MPEEQQHIGLNRVGEVRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+   + Y K ARI GEV+GKYHPHG+ A+YD + R+ QD+S+R  LI+GQGNFGSV
Sbjct: 61  QELGLSAGRSYKKAARIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL K A  +L D+ K+TVD  PN+D + +EP +L A  PN+LVNG  
Sbjct: 121 DGDAPAAMRYTEVRLAKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E VD  + ++++PD   D LM ++ GPDFPTGA I GRTGI++A
Sbjct: 181 GIAVGMATNIPPHNLSETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIYGRTGIRDA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  + +EK+ G RE I+V+E+PYQVNKA ++E+IAELVR+++I  IADLR
Sbjct: 241 YLTGRGLIRMRAKAFVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELK+   A  ILNQL+++T++QS F   M+AL   +P+   L   L  
Sbjct: 301 DESDREGMRIVIELKKEQPAPPILNQLFKHTAMQSTFGAIMLALVEGQPKVLALKEALSH 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +V+RRT++ L KA +RAH+L G  IA+ +LD V+ +IR S + + AR  LM++
Sbjct: 361 FIEHRKTIVIRRTRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQ 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +S++Q +AILELRL RLT L R  I++E +  
Sbjct: 421 --------------------------FGMSQIQAQAILELRLQRLTQLERQKIQDEYSET 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL+S + +  IIK+ELL++K+     RRT I+E   ++E ED +  E+MV+
Sbjct: 455 IAAIERYRAILASEALVCQIIKEELLAIKETYGDLRRTEILEETTEIELEDMLADEEMVI 514

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++H GY+KR  L+ YR+QRRGGKG +G+  ++ED+V  LF+ +TH+ +L F++ G V+ 
Sbjct: 515 PITHGGYIKRSNLNAYRSQRRGGKGMTGMATKEEDYVEHLFVATTHSHLLLFTNQGKVHW 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP     A+GKAL N L L  GE+ITT++P  + E    + Y++ AT+ G V++ 
Sbjct: 575 LKVYGLPQLGHAAKGKALANFLQLGVGEQITTVIPIRQFEV---DRYLLMATRRGIVKKT 631

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           +L+ +      G IA+ LD  DE+++V     +++ILL T+ G  +RF    +R  AGR 
Sbjct: 632 ELNAYGNPRAGGIIAITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFKEDEVRS-AGRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GISL  GD+V+   +V    A                                  
Sbjct: 691 ARGVKGISLEGGDEVVGAEVVAQGAA---------------------------------- 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+E+G+GKRT   ++R+ +R GKGI     +  N  G 
Sbjct: 717 -------------------VLTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRN--GP 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE 899
            V V  V   DQI+++S +G + R+ V+EI +  RAT+GV +      +RV +V R + +
Sbjct: 756 AVGVMLVQSGDQIMMISQEGRITRMRVDEISLIGRATQGVRLQGLEPTDRVAAVTRLVSD 815

Query: 900 SEIVDEAES 908
            E V+EA+ 
Sbjct: 816 DEGVEEADG 824



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 15/230 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ Y   R GG     + +   D +  + +      +L  +  G   + K
Sbjct: 623 TRRGIVKKTELNAYGNPRAGG--IIAITLDGGDELIAVRLTKGDDEILLGTRQGMAIRFK 680

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      ARG   +  +SL  G+ +                 V+  T+ G  +R   
Sbjct: 681 EDEVRSAGRAARG---VKGISLEGGDEVVGAEVVA------QGAAVLTVTERGYGKRTDP 731

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   +R GK  + + + D     + V      + I++ ++ G+  R  +  I    GR
Sbjct: 732 EEYRLQSRGGKGIINIRATDRNGPAVGVMLVQSGDQIMMISQEGRITRMRVDEI-SLIGR 790

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + GVR   L   D+V ++  ++  D   +E                 D 
Sbjct: 791 ATQGVRLQGLEPTDRVAAVTRLVSDDEGVEEADGPQSPPEPGGEAGPLDE 840


>gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
 gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC
           43183]
          Length = 843

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/909 (39%), Positives = 553/909 (60%), Gaps = 91/909 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D CVA IDN DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIYGMSGVREAYMTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +S   ++IVVTEIPY VNKA +++ IA+L  EK+I  I++  DESDR+G R+V
Sbjct: 243 AKAEIETSST-HDKIVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +K +    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKTKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +                                          
Sbjct: 695 DEDGQDEVVGMICIKDPET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD-- 904
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++      D  
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSETEEDII 821

Query: 905 ---EAESTE 910
              +++++E
Sbjct: 822 AEEDSDASE 830



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 103/239 (43%), Gaps = 12/239 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PETETIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +  GR + GVR I+L K  D++ S+  V     +              +  I  +  E 
Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSETEEDIIAEEDSDASEKTQNDIVNNENEE 843


>gi|159903668|ref|YP_001551012.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9211]
 gi|159888844|gb|ABX09058.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 881

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 539/918 (58%), Gaps = 64/918 (6%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  ++    E E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPVEPNNGVPGEFEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ L++G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GS+D DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSIDNDPPAAMRYTESRLQSLTTESLLEDIESETVDFLDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G +A+I NP++  + L +II+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELIEGLMALISNPELTNNELFKIIQGPDFPTGGQILGRNG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV+ IE        DR+ +++T++PYQ NKAA++E+IA++V +K+
Sbjct: 241 IQETYLTGRGSVTMRGVADIETIEVAGRPDRDAVIITQLPYQTNKAALIERIADMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R +   V+LN L++ T LQS FS NM+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPVTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L+ +L+ F+ FR E + RRT YLL KA +R H+L+GL +A+  LD ++ +IR + +   
Sbjct: 361 SLLRMLQVFLDFRVETIERRTSYLLRKAEERNHLLLGLLVALDQLDPIIELIRAASDTSV 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+ +L +                             L+EVQ  AIL+++L RLT L  D 
Sbjct: 421 AKAKLQE--------------------------LHRLTEVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L   I +  DIL+++ R+  +IK+EL+ +K++ + PRRT I++    ++D D 
Sbjct: 455 IRLEHEDLLKRIADFQDILANKPRVFDLIKKELIQLKEKYEAPRRTEILDLGGGIDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G+SG   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVNQFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+PI S  A+G  ++ +L + + E IT+++     +   ++ +++  T
Sbjct: 575 SDRGVAYSLPAYRVPISSRSAKGTPVVQLLPIPREEAITSLLSVSSFD---DDNHLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G ++R  +S F +I  +G IA+ L+  D +  V      + +L+ ++ G  + F ++ 
Sbjct: 632 KGGYIKRTLVSAFSKIRANGLIAISLEDGDALTWVRLAASGDSVLIGSRKGMTIHFRLND 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L KGD ++ M ++    AD           S        D  
Sbjct: 692 DELRPL-GRTARGVRSMNLRKGDSLVGMDVLPRELADRIAGTNNDDSDSDSDSDSDSDEV 750

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            I                       +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 751 GI----------------------AEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAI 788

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                N+  +LV +  +   ++++ V++KG ++R   ++I   SRA  GV +      + 
Sbjct: 789 KF--RNDGDSLVGLKVLGHGEELLFVTEKGIIVRTSADKISQQSRAATGVRLQRLDSGDH 846

Query: 891 VVSVERIRESEIVDEAES 908
           +  V  +   + V + +S
Sbjct: 847 LSEVVLVPPEQEVQDDDS 864



 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 96/261 (36%), Gaps = 30/261 (11%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              ++ ++ ++  GY+KR  +S +   R  G     + + D D +T + + ++  SVL  
Sbjct: 621 FDDDNHLLMLTKGGYIKRTLVSAFSKIRANG--LIAISLEDGDALTWVRLAASGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINIL----------------------SLNQGE 628
           S  G    ++     L      ARG   +N+                       + +  +
Sbjct: 679 SRKGMTIHFRLNDDELRPLGRTARGVRSMNLRKGDSLVGMDVLPRELADRIAGTNNDDSD 738

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD-SRDEIL 685
             +      ++       +V+ A+  G  +R  ++ F    R+G    A+K     D ++
Sbjct: 739 SDSDSDSDSDEVGIAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAIKFRNDGDSLV 798

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            ++      ++L  T+ G  VR     I     R + GVR   L  GD +  + +V    
Sbjct: 799 GLKVLGHGEELLFVTEKGIIVRTSADKI-SQQSRAATGVRLQRLDSGDHLSEVVLVPPEQ 857

Query: 746 ADYDERICYMKHMSAQRRLIS 766
              D+    ++ + ++     
Sbjct: 858 EVQDDDSPGVEEIQSENNASP 878


>gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
 gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712]
          Length = 840

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/900 (39%), Positives = 542/900 (60%), Gaps = 83/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + I  ++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G+   K
Sbjct: 2   ENGGEKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++++Y A+ RMAQ+WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PYKKSARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDTVD   N+DGS +EP VL  R P +LVNG  GIAVGMATN
Sbjct: 122 YTEARMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HN+ + +D   A IDN DID++ L++II+ PDFPTG  I G +G++ +Y TGRG +V
Sbjct: 182 MPPHNIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIYGYSGVRESYLTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + +E     RE+++V EIPY VNKA ++ +IA+L+ EK+I  I+++ DESDR+G R
Sbjct: 242 IRPKTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+ A ++V+LN L ++T+LQS F VN VAL   +P    L  I++ FV  R +VV
Sbjct: 302 IVIDIKKDAISNVVLNTLLKHTALQSSFGVNNVALVHGRPRLLNLKDIIRYFVEHRHDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL IA  ++DEV+R+IR S  P+ A+  LM           
Sbjct: 362 VRRTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALM----------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q  AI+ +RL +LTGL +D +R E   +   I    D
Sbjct: 411 ---------------DAFSLTDKQAAAIVAMRLGQLTGLEQDKLRAEYEDIEKLIAHLND 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+     + IIK ELL+VK +    RRT IV    +   ED    E+MV+T+SH+GY+K
Sbjct: 456 VLAHVELRMEIIKNELLAVKAQYGDDRRTDIVYASEEFNPEDFYADEEMVITISHMGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS Y+ Q RGG G  G   RDEDF+  + + + H ++LFF+  G  +  KV+ +P G
Sbjct: 516 RTPLSEYKVQNRGGVGSKGSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEG 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           + Q++G+A+ N+L++   +++   +   +  D    N+ Y+V  TK G +++  L  + +
Sbjct: 576 TKQSKGRAIQNLLNIEPDDKVKAYINLLDLKDYDYINSNYIVLCTKKGIIKKTTLEAYSR 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             ++G  A+ +   D++L  +    ENDI++  K G+ +RFP S +R   GR + GVRGI
Sbjct: 636 PRQNGVNAITIKEGDQLLEAKLTNGENDIMIAVKSGKAIRFPESKVRPM-GRTASGVRGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+ I M  V   +A+                                        
Sbjct: 695 WMDDDDEAIGMVCVEPNNAN---------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL VSE GFGKR++  D+RI+NR GKG++  ++++  + G L+A+  V
Sbjct: 715 ------------ILVVSENGFGKRSAIEDYRITNRGGKGVKTINMTE--KTGNLIALIDV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D D +++++  G  IR+ V+ +R+  R T+GV + +   ++ + +V ++  ++  + +E
Sbjct: 761 TDEDNLMIINRSGLTIRLEVSSLRVMGRNTQGVKLINLRNEDSIAAVAKVSAAKEEENSE 820


>gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
 gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM
           17393]
          Length = 856

 Score =  851 bits (2198), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/904 (39%), Positives = 551/904 (60%), Gaps = 86/904 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DI+++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE +S   ++IV+TEIPY VNKA +++ IA+L  +K+I  I++  DESDR+G R+V
Sbjct: 243 ARAEIETSST-HDKIVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ FSVN VAL   +P    L  ++K FV  R EVV+R
Sbjct: 302 IDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLKDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +   I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S+      +I  EL+ VK +    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 SNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D    N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++    + DE 
Sbjct: 762 TDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSESMEDEI 821

Query: 907 ESTE 910
              +
Sbjct: 822 PVDD 825



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 107/251 (42%), Gaps = 12/251 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T +ND+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  D++ S+  V     + +  +                 E+  
Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSESMEDEIPVDDENSPIPPTINEVEGEEKDY 844

Query: 774 SLKNDSSVEGN 784
           +  N  + E  
Sbjct: 845 NSDNGINNEDE 855


>gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
 gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057]
          Length = 848

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/902 (39%), Positives = 549/902 (60%), Gaps = 86/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQGNFGSVDGD  AA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D CVA IDN +ID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  S   ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 AKAEIETGST-HDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  +++ F+  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIRYFIEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELVEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDF+  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YVVF TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   D                                          
Sbjct: 695 DEDGQDEVVGMICIKDPDT----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++      +  
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKVTSENEDEIL 821

Query: 907 ES 908
           E 
Sbjct: 822 EE 823



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 104/244 (42%), Gaps = 12/244 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VV  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVVFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +     +   ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PDTETIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  D++ S+  V   + D              +       E   
Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEDEILEEGNEIIPENSQNTKDSQDEINN 844

Query: 774 SLKN 777
             + 
Sbjct: 845 VNEE 848


>gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
 gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum
           DSM 5476]
          Length = 868

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/896 (39%), Positives = 537/896 (59%), Gaps = 87/896 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  I    +     +  V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ +
Sbjct: 1   MSNEITF--DPNIGKVIPVDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTL 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+  +K Y K A   G V+G+YHPHG+A++YDAL RMAQD+SLR  L++G GNFGSV
Sbjct: 59  YENGIFPDKAYRKSADTVGSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE ++ K +  +L D+ K+TV+F  NYD   +EP+VL AR+PN+LVNG  
Sbjct: 119 DGDPPAAYRYTEAKMSKISMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGST 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+D    +IDNPD +L  +M  I+GPDFPT  +I+G++GI+ A
Sbjct: 179 GIAVGMATNIPPHNLREVIDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIMGQSGIRAA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +R  + IE+ +  R +IVVTE+PYQVNKA ++E IA  V++KRI  I+ LR
Sbjct: 239 YATGRGKIQVRARAEIEEMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIELKR A+  +ILN+LY +T +Q  F V  +AL    P+  TL  +L+ 
Sbjct: 299 DESNREGMRIVIELKRDANPQIILNKLYSFTQMQETFGVINLALVNGVPKVMTLKEMLEH 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ F+ EV+ +RT+Y L KAR+R H+L GL IA+  +DEV++ IR S     ++  L++R
Sbjct: 359 YIEFQSEVIRKRTEYDLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIER 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q  AI+++RL +L+GL R  I  EL  L
Sbjct: 419 --------------------------FGLDELQADAIVKMRLGQLSGLERMKIEEELAGL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IKE   IL   + +L I+++EL +++D+    RRT I+    +++ ED I  ED VV
Sbjct: 453 LEKIKEYETILGDDALILVIVREELAAIRDKFGDERRTEILAVSGEVDIEDLIPEEDCVV 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR P  +Y+ Q+RGG+G +G+  R+EDF  +LFI STH +VLF ++ G +YK
Sbjct: 513 TLTHYGYIKRQPTDIYKTQKRGGRGVAGMKQREEDFAEELFIASTHDNVLFITNRGRMYK 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P G   ++G  ++N+L +   E++T+++   + +    + Y+V  TK G ++R 
Sbjct: 573 LKCYEIPEGGRTSKGTNIVNLLPIEGDEKVTSMIRITDFD---PDQYLVMVTKSGMIKRT 629

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L  +  + ++G IA+ L   DE+  V      + +++ T+ G  +RF  +  R  + R+
Sbjct: 630 VLDAYKNVRKNGLIAISLLEGDELAWVRLTNGNSQLIVATRNGMAIRFDENDARPLS-RS 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVR I L   D+V+ MA +                                       
Sbjct: 689 AKGVRAIKLRGDDEVVGMARLR-------------------------------------- 710

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          +   ++TV+++G G+RT   D+RI  R G G     VS  +E G 
Sbjct: 711 ---------------EGATVMTVTDRGLGRRTKIEDYRIQTRGGYGKINYHVS--DEKGH 753

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +VAV  V+++D +IL+S+ G +IR+ V+++ + SR   GV +     D RVV+  R
Sbjct: 754 VVAVKVVDEDDDLILISNDGVIIRIRVSDVNVMSRYAGGVKVMRVQGDARVVTFAR 809


>gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
 gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891]
          Length = 874

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 389/893 (43%), Positives = 547/893 (61%), Gaps = 67/893 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLES 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AIL+LRL +LTGL  + I +E  +L  EIK
Sbjct: 426 AGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIK 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P                              
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILP------------------------------ 635

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                                V+  +++  I + T  G   + P++    FA   + G+ 
Sbjct: 636 ---------------------VDEFSEDKFIFMATGDGTVKKTPLTQ---FANVRANGLI 671

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D +I + I                   A+ ++ +      T+           
Sbjct: 672 AVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMGR---TAAGVRGMKLAED 728

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   E  ILTV++ G+GKRT   ++    R+ +G+ +  VS  N  G +V   
Sbjct: 729 DQVVSLIVPANEGDILTVTQNGYGKRTELAEYPTKGRATQGVVSIKVSDRN--GPVVGAV 786

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V + D++++++D GTL+R  V+E+    R T+GV +  TA+DE VV ++RI 
Sbjct: 787 QVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDENVVGLQRID 839



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 68/424 (16%), Positives = 154/424 (36%), Gaps = 29/424 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL++ ++  H+L      +  + E +  +R +                A
Sbjct: 469 EHEKILDEYKALLDEIKELMHILASTERLMEVIREELETVRDAFG-----DVRRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     ++ E     + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   E E        D    +
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSED 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL+ +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTPLTQFANVRANG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L + +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFAEDKVRAMGRTA---AGVRGMKLAEDDQVVSLI------VPANEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   D     +      + +++++ T  G  VR  +S +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSDRNGPVVGAVQVEEGDEMMMITDAGTLVRTRVSEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +            T+   
Sbjct: 812 -SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVELVEGEESEEAVNATEESEAPTQSDE 870

Query: 774 SLKN 777
             + 
Sbjct: 871 DSQE 874


>gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
 gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7]
          Length = 861

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/902 (40%), Positives = 547/902 (60%), Gaps = 85/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE ++ I +V ++ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K
Sbjct: 3   EEFKENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQDWS R  L++G GNFGSVDGD  AA R
Sbjct: 63  AHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D+  NYDGS +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+     +++NPD     LME I GPDFPTG +++G++GI+ AY TG+GSI+
Sbjct: 183 IPPHNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVMGKSGIRKAYETGKGSIM 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE     +E+I+V E+PY VNKA ++E+IA+L R+KRI  I DL DESDR G R
Sbjct: 243 VRAKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R  SA V+LN LY+ TS+Q+ F  NM+A+    P+  +L  IL+ ++  +E V+
Sbjct: 303 IVIDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNGVPKVLSLKSILEEYLKHQEVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y   KA  RAH+L GL IA+ +++E++RIIR S   + A+  L++          
Sbjct: 363 RRRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE Q +AIL++R+ RLTGL RD I +E   L   I++  D
Sbjct: 413 ----------------TYGLSEKQAQAILDMRMVRLTGLERDKIESEYTELIALIEDMAD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+  II+ ELL V+++    RRT ++   +L +EDED I  ED+V+T++  GY+
Sbjct: 457 ILAKPERIHKIIETELLEVQEKFGDARRTELLVGEVLSLEDEDLIEEEDIVITLTSKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P S +++QRRGG+G  G+ + D+DF+  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPSSEFKSQRRGGRGIQGMGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L ++ GE +  ++    +    + LY+ F T+ G V+R  +  F  I
Sbjct: 577 YGRTAKGIPVINLLGIDSGETVQAVINVRGEAE--DGLYLFFTTRLGTVKRTDVKAFSNI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++SV     + +I++ T +G  V F    +R   GR + GVRGI 
Sbjct: 635 RSNGLKAIVLKENDELMSVSVTNGDENIIIGTHMGYAVSFHEKDVRNM-GRTAGGVRGIR 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI +                                                  
Sbjct: 694 LRENDYVIGV-------------------------------------------------- 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              +L  ++  +L ++EKG+GKRT + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 704 ---DLLKEDSEVLIITEKGYGKRTKASEYAIKGRGGKGIKTANITSKN--GNLAGLTTVK 758

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I+L+++ G +IR  V+ +    RAT GV +   A++ +V ++ ++    I DE + 
Sbjct: 759 GDEDIMLITNTGVIIRFNVSAVSQTGRATLGVRVIRVAEEVKVSTMAKVDAEVIEDEIDE 818

Query: 909 TE 910
           TE
Sbjct: 819 TE 820


>gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
 gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6]
          Length = 821

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/903 (41%), Positives = 538/903 (59%), Gaps = 84/903 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +     I  V I  EM+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+
Sbjct: 1   MADQQWSHGNIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NK Y K ARI G+V+GKYHPHG+ ++YDA  R+AQD++ R LL++G GNFGS+DGD  
Sbjct: 61  TPNKPYKKSARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV +G   +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGR
Sbjct: 181 MATNIPPHNLNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALILGREGIKKAYSTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R  + IE+ +  + +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDR
Sbjct: 241 GSVKMRARATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG R+VIEL+     D++LN+LY++T LQ  F V M+AL    P    L  +L  ++  R
Sbjct: 301 QGMRIVIELRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGHPRVLNLKEVLGYYLDHR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+VRRT++ LNKA  RAH+L GL IA+ ++DEV+  IR S   E AR  LMQ+     
Sbjct: 361 LNVIVRRTQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AIL++RL RLTGL R+ I +E   L   I+
Sbjct: 416 ---------------------FGLSEKQAVAILDMRLRRLTGLEREKIEDEYKELLALIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   IL+S +R   IIK EL  +K +   PRR+ I     D++ ED I  E+MV+T++  
Sbjct: 455 DLKAILASEARQRQIIKDELDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+  +VYR Q +GG G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + 
Sbjct: 515 GYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYE 574

Query: 606 LPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +P  GS  +RG A++N+L L  GE +TT++   + E    N+ +   T+ G V+R  + +
Sbjct: 575 VPEAGSRNSRGTAMVNVLPLAVGESVTTMI---DLERIHENVNLFMVTEFGVVKRTAIEE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I RSG  A+ LD  D ++SV   T   DIL+ TKLG  +R     +R+   R + GV
Sbjct: 632 YRNIRRSGLNAINLDDGDRLISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMK-RAAHGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD V+   ++   ++                                      
Sbjct: 691 RGIKLKTGDVVVGAGVLESDES-------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       E  + T+SE+G+GKR  +  + +  R G G +   ++  ++ G +VAV
Sbjct: 713 ------------EAQVFTISEEGYGKRNEADAYNVQKRGGIGTKNFRIN--DKTGDVVAV 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V+++D+++L+S++G +IR  +N+I +   +A  GV   +  + ++V S+  I  SEI 
Sbjct: 759 EVVHNDDEVMLISEQGKIIRFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPASEIE 818

Query: 904 DEA 906
            E 
Sbjct: 819 SED 821


>gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
 gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379]
          Length = 815

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/898 (41%), Positives = 551/898 (61%), Gaps = 85/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTG+ +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+I++TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+ +         
Sbjct: 362 VRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q +AIL++RL RLTGL RD I  E + L   I +  D
Sbjct: 413 -----------------FGLTEIQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K ELL VK++    RR+ I+E  +  +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIQIVKDELLEVKEKFGDKRRSIIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   +         ++F+TK+G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEGTNLIFSTKYGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V  +                                            
Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIA 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + E  ++ 
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSTISTLGRTATGVKVINLVDDQKVATVTLAAKEESYEDE 815


>gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922]
 gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922]
          Length = 864

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/892 (40%), Positives = 535/892 (59%), Gaps = 88/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N+ Y
Sbjct: 5   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAY 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD + RMAQ WSLR LL++GQGNFGSVDGD PAA RYT
Sbjct: 65  KKSARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RLQK +  LL D+ K+TVDF+ N+D +  EP VL  R P +LVNG  GIAVGMATN+ 
Sbjct: 125 EARLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMA 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG VA IDN DI +D L + I  PDFPTG +I G  G+K A+ TGRG +V+R
Sbjct: 185 PHNLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIYGYDGVKQAFETGRGRVVMR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             ++ E+    R+ I+VTEIPYQVNKA M+ K A+L+++ ++  IA++RDESDRQG R+V
Sbjct: 245 AKANFEEV-HGRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK  A  +V+LNQLY++T LQS FS+N +AL   +PE+  L  +++ FV  R EVVVR
Sbjct: 304 YVLKMDAIPNVVLNQLYKFTQLQSSFSINNIALVNGRPEQLNLKDMIRHFVDHRHEVVVR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT++ L KA++RAH+L G         +LD  ++IIR S  PE AR  LM          
Sbjct: 364 RTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLMT--------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAILELRL  LTGL  D IR E   +   I+   
Sbjct: 415 -----------------AFDLSEIQARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLK 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILS       IIK+EL  +K +    RR+ I     D+  ED I  +++V+T+SHLGY+
Sbjct: 458 NILSDEDLRFSIIKEELEEIKRKYADERRSEIDYSGGDLNIEDLIPDDNVVLTISHLGYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL+ Y+ Q RGG G      RDEDF+  + + + H  +LFF+  G  +  +V+ +P 
Sbjct: 518 KRTPLTEYKKQSRGGVGNRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPE 577

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  ++G+A+ N++++   +++   +   +  DE   NN YV+  TK+G +++  L  + 
Sbjct: 578 GSKTSKGRAIQNLINIEPDDKVKAYILTHDLMDEEYVNNNYVIMVTKNGIIKKTSLEAYS 637

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G  A+ +   D +L       ++ I++ TK G+ +RF    +R   GR + GVRG
Sbjct: 638 RPRINGINAITIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPM-GRTASGVRG 696

Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           I+L   K ++VI M +V   +                                       
Sbjct: 697 INLGDDKDNEVIGMIVVSDME--------------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        + +L VSEKG+GKRTS  D+R +NR GKG+   ++++  + G L+A+
Sbjct: 718 ------------NETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITE--KTGKLIAI 763

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V D++ +++++  G  IR  ++EIR+  RAT+GV + +  K++ + ++ +
Sbjct: 764 ESVTDDNDLMIINKSGVAIRTGLSEIRVMGRATQGVKLINLKKNDEIAAIAK 815


>gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10]
 gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10]
          Length = 840

 Score =  851 bits (2197), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/895 (41%), Positives = 543/895 (60%), Gaps = 91/895 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE  E+ I  + I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K Y K     GE +  YHPHG+AA+YD+L RMAQD+SLR  L++G GNFGS DGD  AA
Sbjct: 62  EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGE +DG  AV+DNP+I +D LM+ I+GPDFPT A I+G+ GI+ A+ TGRG 
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKRGIREAFKTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
           +V+R  + IE+  G+R +I++TEIPY VNKA ++EKIA+LV++KRI  I+ ++DES R +
Sbjct: 242 LVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGREE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLIGILKAF 361
             R+VI+LKR A+ +V+LNQLY+ T LQ  FSVNMVA+       Y+P    L  I+  +
Sbjct: 302 PVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIIDYY 361

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A +E+V+ RRTK+ L+KA  RAH+L GL  A+ +LDEV++ IR S     A+  L +R 
Sbjct: 362 IAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSER- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                       S+ Q +AI+++RL RLTGL R+ +  E N L 
Sbjct: 421 -------------------------FGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELL 455

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +IK   D+L++   +  IIK EL  +K++    RRT+I     +++ ED I  E+ V+T
Sbjct: 456 EKIKYYKDVLANEILVHQIIKDELSVIKNKYADERRTKIEIDEDEIDIEDLIQEEESVIT 515

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++H GY+KR+P   Y++QRRGGKG  G+  R+EDFV +LF+ STH  ++FF++ G VY+ 
Sbjct: 516 MTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRL 575

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P    QA+G A++N+L L+  E++TT++P  E +     LY++ ATK+G V++  
Sbjct: 576 KAYEIPESGRQAKGTAIVNLLQLDGDEKVTTVIPIQEYK---EGLYLIMATKNGLVKKTD 632

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L ++  I + G  A+ L   D+++ V+      DI+L+T  G  +RF  +  R   GR S
Sbjct: 633 LMEYDNIRKGGLAAVSLRENDQLIDVQLTDGNQDIILSTVNGMAIRFRETDARPI-GRVS 691

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+GI L +GD VI M +                                         
Sbjct: 692 QGVKGIELDEGDFVIGMEVCTDNTT----------------------------------- 716

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L V+E GFGKRT   ++++  R GKG+    +++  + G  
Sbjct: 717 ------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGKS 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +  V++ D I+L+S  G++IR+ V+EI I  RAT+GV +   ++   VVSV R
Sbjct: 757 IGMLLVSEEDDIMLISSDGSIIRMKVSEISILGRATQGVTLMRMSEGNNVVSVAR 811


>gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
 gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420]
          Length = 838

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/872 (41%), Positives = 523/872 (59%), Gaps = 56/872 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGSVD DPPAA RYTECRLQ  A   LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP+VL AR P +L+NG  GIAVGMATNIP HNLGE+VDG VA+I NP+I 
Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT----SGDREQIVV 268
              LM+ I  PDFPTG  ILGR+GIK+AY TGRGSI +RGV+ +E        D+E I+V
Sbjct: 181 EKELMQYIPAPDFPTGGQILGRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAIIV 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAE+V +KRI  I+D+RDESDR+G RVVIELKR A   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQS F  NM+AL G +P+  T+   L+ F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQSNFGANMLALVGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+ NLD V+ +IR + +  TA+ +L+++                            
Sbjct: 361 GLLIALDNLDAVIAVIRAANDTATAKSQLIEQ--------------------------FG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSE Q  AIL+++L RLT L    I+ E   L + I +  DIL++RSR+L II+ E L +
Sbjct: 395 LSEPQADAILQMQLRRLTALEAQKIQAEHEELQVRIADLQDILANRSRILEIIETEALQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K   DTPRRT I E   +++D D I  E  V+ V+  GY+KR+P+  + AQ R  +G++ 
Sbjct: 455 KTTHDTPRRTAIQEVEGELDDIDLIANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAA 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             M+++D V        H S+LFFS  G VY  + +++P  S  ARG  ++ +L +   E
Sbjct: 515 ARMKEDDGVEHFLTCCDHDSLLFFSDRGVVYSLRAYQIPAASRTARGVPIVQMLPIPHDE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+++P  E     +++Y+V  T+ G +++  L  F  I  +G IA+ L   D++  V 
Sbjct: 575 KITSVVPVSEFT---DDVYLVMLTRKGYIKKTALDAFSNIRANGLIAISLGEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            C  E+ I++ +  G  + F      +R   GR + GV+ + L   D++ISM I+     
Sbjct: 632 LCRAEDSIIIGSSQGMAIHFKADHDQLRPL-GRATRGVKAMKLRSKDELISMDILPAQVV 690

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +                           ++ +      ++ E   E   +  ++L V+  
Sbjct: 691 ERLIATA-----------------NSEEVETEDDTSDEVNGEEVHETAGQGPWVLVVTTG 733

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G GKR     FR+ NR+G G+        ++   L A+  VN+ D++++V+ +G +IR  
Sbjct: 734 GLGKRVPVSQFRLQNRAGMGLVTIKF--RHKKDKLAALRVVNEGDELMMVTMRGIIIRQA 791

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ I   SR   G+ +    +++ + +V  + 
Sbjct: 792 LDAISPQSRMATGIRVQRLDEEDAIAAVALVP 823


>gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A
 gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 825

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/887 (42%), Positives = 562/887 (63%), Gaps = 70/887 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V I  E+++SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +   WNK Y K 
Sbjct: 7   EIVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD++ RMAQ++SLR +LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K +  LL DL K+TV+F PNYDG+   P +L ++ PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MSKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV- 253
           L EV+DGC+A I + +I L  L++ I GPDFPT  +I G+ GI+ AY TG+G I IR   
Sbjct: 187 LNEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKIYIRARN 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              +     +E I+  EIPYQVNK+ ++EKIAELV+EKRI  I  LRDESD+ G R+V+E
Sbjct: 247 KIEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+ A +++ILNQLY  T LQ  F +NMVAL   +P+  +L  ILK F++ REE+V RR+
Sbjct: 307 IKKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREEIVTRRS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+K   R+H+L GL+IA+ N++ ++ +I+ + +   A+  +++++W   + + +   
Sbjct: 367 IFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNSEKI--- 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                     D   + +E Q +AIL+LRL +LT L ++ +  E + L  +IKE   IL S
Sbjct: 424 -------NQKDHDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKS 476

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           R R+  +I+ EL+S+K+     RRT I E   D+  ED I +ED+VVT+SH GYVK  PL
Sbjct: 477 RDRMREVIRDELVSIKNNFGDQRRTEITENNPDISIEDLINQEDVVVTLSHSGYVKYQPL 536

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y AQ+RGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  A
Sbjct: 537 SDYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPESSRHA 596

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ ++N+L L+  ERIT I+P  E +   +NL +  AT  G V+++ L +F +   +G 
Sbjct: 597 KGRPIVNLLPLSNKERITAILPIHEFK---DNLNIFMATAQGIVKKSSLKEFKKPRIAGI 653

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L + DE++ V     +N+I+L T+ G+ V+F  +++R   GR + GVRGI ++K D
Sbjct: 654 IAINLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSVRTM-GRTASGVRGIKISKND 712

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ +                                                     
Sbjct: 713 KVVSLIV----------------------------------------------------- 719

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             K++ IL  +  G+GKRT   DF I +R+ +G+ +  ++K N  G ++    V + DQI
Sbjct: 720 PYKKESILIATNNGYGKRTKITDFPIKSRATQGVISIKITKKN--GKIIGAIQVVEKDQI 777

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++++ GTL+R+  +EI +  R T+GV++  T+K+E+VV+++RI E 
Sbjct: 778 MMITNAGTLVRIRASEIGVLKRNTQGVILIRTSKNEKVVALQRIVEP 824


>gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
 gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131]
          Length = 828

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/891 (41%), Positives = 550/891 (61%), Gaps = 85/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNF S+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                                                 
Sbjct: 693 EDDRVVGASRIRD----------------------------------------------- 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  Q +L ++E GFGKRTS+ D+    R GKGI+  ++   N  G L  +  V+  
Sbjct: 706 ------NQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANIIPKN--GQLAGLVTVDGT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 758 EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 808



 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G+RA  + +      L+ V   +  D II+ +  G  +R     
Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R+  GV      +D+RVV   RIR+++ V
Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIRDNQEV 709



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 15/224 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + +   ++                 +N  V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIRDNQEVLVITENGFGKRTSA 723

Query: 663 SDFIQINRSGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R GK    A  +    ++  + T     DI++ T  G  +R  ++ I    GR
Sbjct: 724 TDYPTKGRGGKGIKTANIIPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTGR 782

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            ++GV+ + L    ++++  +V   D+   E     ++  ++ +
Sbjct: 783 ATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826


>gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
 gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058]
          Length = 853

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/904 (38%), Positives = 545/904 (60%), Gaps = 69/904 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +  V I ++M+++Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+GM ++G   +K Y
Sbjct: 3   EQGKLIRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY  L R+AQ W++R  L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K+TVDF+PN+D + +EPVVL AR PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLMKLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D  VA I NP I ++ LM  I+ PDFPTG +I G  G++ A+ TGRG I+IR
Sbjct: 183 PHNLSETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIYGYAGVREAFETGRGRIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE ++   ++IVVTEIPY VN+A +++ IA L  EK++  IA++ DESDRQG R+V
Sbjct: 243 SKCEIETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR  +A+VILN+LY+Y+ LQS FSVN VAL   +P    LI ++  FV  R EVV R
Sbjct: 303 IDIKRDGNANVILNKLYKYSQLQSSFSVNNVALVKGRPRTLNLIDLISNFVEHRHEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA +RA +L GL I + NLDE ++IIR S  P  A+  L+ R           
Sbjct: 363 RTQFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q   ++ELRL +LT + +D +R E   L   I++  DIL
Sbjct: 412 ---------------FSLTERQAAYVVELRLRQLTAMEQDKLRTEYEELLKRIEDLRDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R + II+ EL+ +  +    RRT IV    DM  ED    + M++T+SH GY+KR 
Sbjct: 457 AKVERRMKIIEDELMELGSKFGDKRRTEIVYATEDMNPEDFYADDQMIITISHQGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ ++AQ RGG G  G   +DEDF+  ++  + H  +LFF+  G  Y  KV+ +P GS 
Sbjct: 517 ALAEFKAQNRGGVGSKGGATKDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSK 576

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   ++I   +      D    +  Y+VF T++G +++  L  + +  
Sbjct: 577 TSKGRAVQNMLNIEADDKINAFIRVKNLQDPDYNSKHYLVFCTQNGIIKKTCLEAYSRPR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V      ++I++  + G+ +RF  S +R   GR + GV  +++
Sbjct: 637 QNGVNAITIRENDQVIQVRLTDGNSEIVIANRQGRAIRFHESKVREM-GRTATGVNAMAI 695

Query: 730 AK--GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            K  GD+V+ M  V    AD  E +  +      +R    + +E  ++K D         
Sbjct: 696 DKANGDEVVGMVAV----ADKTETVLVVSEKGYGKRSQLDELDENGNIKLD--------- 742

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                            E G         +R++NR GKG++  ++++  + G LV++  V
Sbjct: 743 -----------------ENGE----PIAIYRVTNRGGKGVKTMNITE--KTGKLVSIKLV 779

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVDEA 906
           +D++ I++++  G  IR+ V++IR+  RAT+GV + +   +++ + +V ++ +++I +E 
Sbjct: 780 DDSNDIMIINKSGMAIRMHVSDIRVMGRATQGVRLINLERRNDEIAAVCKV-DADIEEEN 838

Query: 907 ESTE 910
           +S +
Sbjct: 839 DSVD 842


>gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
 gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20]
          Length = 824

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/876 (40%), Positives = 529/876 (60%), Gaps = 85/876 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+     
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG   + +    +E
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+VI+++R  SA VIL
Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV RRT++  NKA  RA
Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S + + A+  +M+R                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMER------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL RD I NE   L   I +  DIL++  R+L II+ E
Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTE 454

Query: 505 LLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  +       RRT ++   +L +EDED I  E++V+T+++ GY+KRV  S +RAQRRGG
Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P     A+G  +IN+L 
Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           ++  ERI  I+            Y+ F T+ G V+R  ++ F  I  +G IA+ L   DE
Sbjct: 575 IDSSERIEAIIS--ASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     E+ +++ T  G  V F  + +R   GR + GVRGI L  GD V+  A++  
Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAVI-- 689

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                               ++  +L +
Sbjct: 690 ---------------------------------------------------TEDSEVLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+  + I++++DKG LI
Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V  +    RAT GV +     + +VV++  +  
Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTMATVEP 792


>gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab]
 gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 846

 Score =  850 bits (2196), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/897 (41%), Positives = 532/897 (59%), Gaps = 78/897 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S  +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 4   RIISTDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKC 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+AL RMAQD+S+R  L++G GNFGS+D DPPAA RYTECR
Sbjct: 64  ARVVGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECR 123

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A   LL D+  +TVDF  NYDGS QEP+VL AR P +L+NG  GIAVGMATNIP H
Sbjct: 124 LTAFAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+I NP++    LM+ I  PDFPTG +I+G+ GI+ AY TGRGSI +RGV
Sbjct: 184 NLGELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIMGQEGIREAYTTGRGSITLRGV 243

Query: 254 SHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + +E         RE I++TE+PYQ NKAAM+EKIAELV EK++  IAD+RDESDR+G R
Sbjct: 244 ATVETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGMR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A   V+LN LY+ T LQS F VNM+A+   +P   TL   L+AF+ FR EV+
Sbjct: 304 VVIELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGEPRTLTLRDALQAFLDFRAEVI 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +R H+L G  +A+  LD V+ +IR + +  TAR EL            
Sbjct: 364 ERRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAEL------------ 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T+ LSE Q   IL+++L RLT L  + I+ E   L  +I +  D
Sbjct: 412 --------------QATLGLSEAQADGILQMQLRRLTALEAEKIQAEHEDLVRQIADLRD 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+ R R++ II +EL  +K    +PRR+R+     +++  D I   + V+ ++  GY+K
Sbjct: 458 ILARRERVMQIISEELQQLKSRFASPRRSRLCLEDCELKVADLIENRETVIFLTEQGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  ++ Q R  +G++G  ++D+D +   F   +H ++LFF+  G VY    + +P G
Sbjct: 518 RMDLEEFQVQGRATRGKAGARIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQG 577

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG A++ +L + + ER+T+++P  E     ++ Y+V  T+ G +++  LS F  + 
Sbjct: 578 SRTARGSAIVQLLPITREERVTSMVPVSEFS---DDEYLVMLTRAGYIKKTALSAFANVR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGI 727
            +G IA+ L+  DE+  V      +D+++ T+ G C+RF      +R   GR + GVR I
Sbjct: 635 SNGLIAISLEENDELRWVRRARSSDDVVMATRQGMCIRFRADDEQLRPL-GRATRGVRAI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  GD ++SM I+        ER                                    
Sbjct: 694 TLNPGDDIVSMDIIFAESVMAAER------------------------------------ 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              +  +L   ++L ++++G GKR++   FR  NR GKG+ AT      E   L A+  V
Sbjct: 718 ---EGERLANPWVLVITKEGRGKRSAIDHFRRQNRGGKGVIATKF--RQESDELAALRIV 772

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           N  D+I+LV+ +G ++R     I   SR   GV++     ++ +V V  +  S I D
Sbjct: 773 NAEDEILLVTARGIVMRQLAKAIPTQSREATGVLVQRLDPEDSIVGVTVVPASFIRD 829


>gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 853

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/923 (39%), Positives = 538/923 (58%), Gaps = 107/923 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EPNVFDKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E++   V +IDN      +  L+ +MEI++GPDFPTGA ILGR  I+ AY T
Sbjct: 182 NIPPHNLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATILGRRSIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR  I +R V++IE  +  + +I+VTE+PY VNKA ++EKIA+LV+EK+I  I  + DES
Sbjct: 242 GRAKIKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L  ++ 
Sbjct: 302 NREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALIDNQPKVLNLHQMLDEYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA +RAH+L GL IA+ ++DEV+RIIR S N   A+ +LM+R   
Sbjct: 362 HQEEVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYKELLAK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+   +LL +IK+E+  + D+    RRT I         ED I  ED V+ ++
Sbjct: 456 IEELQAILADVKKLLTVIKEEIQIIADKYGDDRRTAIGYDDDV-SMEDLIPDEDTVIAMT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           HLGY+KR+ +  +R+Q RGGKG  G+   +ED++ DL + + H  ++FF++ G VY+ K 
Sbjct: 515 HLGYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT I+P  E      + Y+  AT++G V++  + 
Sbjct: 575 YEIPEAGRTARGTAIINLLQLQPDEKITAIIPMREY---NEDKYLFMATRNGMVKKTPMV 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L T+ G C+RF  + +RV  GR S+G
Sbjct: 632 EYEHVRKNGLQAIVLREDDELIEVKATDNNQDIFLVTRKGMCIRFNETDVRV-TGRVSMG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+   + D+VI M +    ++                                     
Sbjct: 691 VIGMRFEEDDEVIGMQMESQGES------------------------------------- 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L VSE G GKRT   +F   NR GKG+     ++  + G +V 
Sbjct: 714 ----------------LLIVSENGMGKRTVISEFSAQNRGGKGVICYKCTE--KTGNIVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRE-- 899
              VND  +I+L++ +G +IR+ V++I I  R T GV + +     D +V S+ ++RE  
Sbjct: 756 AKLVNDGREIMLITTEGIVIRMSVDDISIIGRNTSGVKLMNIDQESDIKVASIAKVRESV 815

Query: 900 ------------SEIVDEAESTE 910
                        E   EAE  E
Sbjct: 816 TKESNVFDEEFYDEETAEAEDVE 838


>gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
 gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1]
          Length = 853

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/914 (39%), Positives = 540/914 (59%), Gaps = 97/914 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+ SY+ YA++VI+ RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EPNIFDKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      +  ++ ++EII+GPDFPTGA ILG+ GI+ AY T
Sbjct: 182 NIPPHNLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R VS IE  +  + +I+VTE+PY VNKA ++EKIAELV++K++  I DLRDES
Sbjct: 242 GRGKIRVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGIL 358
           DR G R+ IEL+R A+A+V+LNQL ++T LQ  F V M+AL        +P+   ++ +L
Sbjct: 302 DRSGMRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQML 361

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++  ++EVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+ ELM
Sbjct: 362 NYYLDHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELM 421

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            LS+VQ++AI+++RL  LTGL R+ + NE  
Sbjct: 422 SR--------------------------FGLSDVQSQAIVDMRLRALTGLEREKLENEYR 455

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I E   IL+   +LLG+IK+E+  +  +    RRT I     DM  ED I  E  
Sbjct: 456 ELEARIAELKSILADEKKLLGVIKEEISIISAKYGDDRRTSIGFDEFDMSMEDLIPDEST 515

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V ++ LGY+KR+ +  ++ Q RGG+G  G+   D+D++ DL + +TH  ++FF++ G V
Sbjct: 516 IVAMTKLGYIKRMSVDNFKNQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRV 575

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P GS  +RG A++N+L +  GE IT I+P  E +   ++ ++  AT++G V+
Sbjct: 576 YRLKTYMIPEGSRTSRGTAIVNLLQMLPGESITAIIPMKEYD---DDKFLFMATRNGMVK 632

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  + ++  + ++G  A+ L   DE++ V+      DI L TK GQC+RF    +R   G
Sbjct: 633 KTPMMEYANVRKNGLQAIVLRENDELIEVKATDDTKDIFLVTKKGQCIRFHEKDVR-ITG 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GV G+ L + DQV+ M                                        
Sbjct: 692 RVSMGVIGMKLNEDDQVVGM---------------------------------------- 711

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                        + + +   +L VS  G GKRT   +F    R GKG+    +++  + 
Sbjct: 712 -------------QKESQGPKLLIVSANGMGKRTPIEEFTPQRRGGKGVLCYKITE--KT 756

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVER 896
           G +V    V D+  ++L++ +G +IR+ VN+I +  R T GV + +  +D    V S+ +
Sbjct: 757 GDIVGAKLVEDDHDLLLITTEGIVIRISVNDISVIGRNTSGVKLMNIDQDSDITVASIAK 816

Query: 897 IRESEIVDEAESTE 910
           +R+     + E  E
Sbjct: 817 VRDDGSKSDGEGLE 830


>gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
 gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30]
 gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10]
          Length = 824

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/876 (40%), Positives = 529/876 (60%), Gaps = 85/876 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGK
Sbjct: 1   MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF+ NYD + +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+     
Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +++NP++    LME++ GPDFPTG +++G++GI+ AY TG+GSI +RG   + +    +E
Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVMGKSGIRRAYETGKGSITVRGKVEVTEMPNGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+VTE+PY VNKA ++E+I+EL R+KRI  I DLRDES R+G R+VI+++R  SA VIL
Sbjct: 241 RILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVRRDVSASVIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+ T+LQS F  NM+A+    P+  +L  IL+ ++  ++EVV RRT++  NKA  RA
Sbjct: 301 NNLYKMTALQSSFGFNMLAIEKGVPKILSLKRILENYIEHQQEVVTRRTQFDKNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DE++ +IR S + + A+  +M+R                        
Sbjct: 361 HILEGLRIALDHIDEIIALIRASNSDDEAKNSMMER------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+ Q +AIL++RL RLTGL RD I +E   L   I +  DIL++  R+L II+ E
Sbjct: 397 --FKLSDRQAQAILDMRLRRLTGLERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTE 454

Query: 505 LLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           L  +       RRT ++   +L +EDED I  E++V+T+++ GY+KRV  S +RAQRRGG
Sbjct: 455 LQELGQRFGDDRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVAKSEFRAQRRGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G  G+ + DEDFV  L   STH ++LFF++ G VYK K + +P     A+G  +IN+L 
Sbjct: 515 RGVQGMGIHDEDFVKTLVSCSTHDTLLFFTNKGKVYKAKGYEIPEYGRAAKGIPVINLLG 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           ++  ERI  I+            Y+ F T+ G V+R  ++ F  I  +G IA+ L   DE
Sbjct: 575 IDSSERIEAIIS--ASGGPQEGRYLFFTTRLGVVKRTSVTAFSNIRANGLIAIGLRENDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++V     E+ +++ T  G  V F  + +R   GR + GVRGI L  GD V+  A++  
Sbjct: 633 LVNVIETHGEDVVIIGTHDGYSVTFKEALVRDM-GRTAAGVRGIRLRDGDYVVGAAVI-- 689

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                               ++  +L +
Sbjct: 690 ---------------------------------------------------TEDSEVLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   ++ I  R GKGI+  +++  N  G L  +  V+  + I++++DKG LI
Sbjct: 699 TENGYGKRTKGSEYPIKGRGGKGIKTANITAKN--GPLAGLTTVSGEEDIMVITDKGVLI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           R  V  +    RAT GV +     + +VV++  +  
Sbjct: 757 RFNVATVSQTGRATLGVRLMKMENNAKVVTMATVEP 792


>gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
 gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548]
          Length = 814

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/896 (40%), Positives = 553/896 (61%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I +V +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK  
Sbjct: 3   EDNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGKYHPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ KDTVDF PN+D    EPVVL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + +P+I ++ L +II GPDFPTGA ILG+ GIK+AY+TGRG + +R
Sbjct: 183 PHNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYILGKAGIKDAYSTGRGKVKLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE    +RE+IV+TEIPYQVNK+ ++EKIA+LV++KRI  I+D+RDESDR+G R+V
Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ++A+++LN LY+YT L++ F +  +AL    P+   L  +++ ++  +++VV R
Sbjct: 303 IEIKRDSNANIVLNNLYKYTQLETTFGIINLALVDGVPKVLNLKELIEYYIEHQKDVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KA+ R H++ GL IA+ N+DE++RIIR S + +  ++   ++           
Sbjct: 363 RTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q++AIL+++L RL+GL  D +  E   L   I   L IL
Sbjct: 412 ---------------FGLTDKQSQAILDMQLKRLSGLEIDKLNAENKELEETIAYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   LL +I  E+  +K++    RR++I+    +++ E+ I +ED+++T++  GY+KR+
Sbjct: 457 NSEENLLNLIIDEMEEIKEKFSDDRRSKIIPDEGEIDIEELIEKEDVLLTLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+S G VY  K + +P GS 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           Q+RG A+INIL L  GE+IT +M   E      +  +V  TK G +++    +F  I ++
Sbjct: 577 QSRGIAIINILKLESGEKITEMMTLSELN---KDSQIVLQTKMGTIKKTDAENFTNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D ++SV    +E +++++TK G  ++F  + +R   GR + GVR I L K
Sbjct: 634 GIIAISLKEYDRLISVRQIDKEEELIISTKNGMTIQFNSADLRSM-GRIAQGVRAIKLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM I                                                   
Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K  E ++L V+E  +GK+TS  +F+  NR GKG++   V++  + G ++   PV+ ++
Sbjct: 702 --KGDETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKIIDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906
            I++VS  G +IR+ V +I I  R T GV + +   +++R+VSV +    E  +E 
Sbjct: 758 DIMMVSLSGDMIRLNVRDISITGRNTVGVKLKNLTDENDRIVSVTKYSTLEEEEED 813


>gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
 gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692]
          Length = 809

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/887 (41%), Positives = 547/887 (61%), Gaps = 84/887 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + S+ I +E++ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M  +G  +N+ Y K A
Sbjct: 2   LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+AA+YDAL RMAQD+++R  L++GQGNFGS+DGD PAA RYTE R+
Sbjct: 62  RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +   L D+ K TV+FR NYD +  EP VL  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV D  +A++D+P + LD L+  I+GPDFPT A++ GR G++ AYATGRGSI +R   H
Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMYGRQGMRQAYATGRGSIKLRSRLH 241

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E++   RE IV+TEIP+ +NKA+++EKIA+LV E ++  I+DLRDESDR G R+VI+LK
Sbjct: 242 VEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDLK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R   +D+++N LY+YT+L++ + +N++A+   +P+  +L  IL+ F+  R+EV++RR++Y
Sbjct: 302 RNTLSDIVINTLYKYTALETSYGINLLAVVNNRPQLLSLKQILELFLEHRKEVILRRSRY 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  RAH+L GL IA+ N+DEVVR+IR S  P  A+  LMQR               
Sbjct: 362 DLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQR--------------- 406

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSEVQ++AIL++RL RLT L RD +  E  ++   I+    I+    
Sbjct: 407 -----------FELSEVQSQAILDMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSE 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            L G+++ EL  ++    +PRRT I      +++ ED I  E++V+T++  GY+KR PLS
Sbjct: 456 VLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDLIPDEEVVITLTRNGYIKRTPLS 515

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q+RGGKG SG  +  +DFVTDL   + H  +L F++ G +++ KV+++P G   AR
Sbjct: 516 AYQQQKRGGKGVSGANVAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTAR 575

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  + N+L L++ E + T++   + +    N   +FATK G V+R+ +  +      G I
Sbjct: 576 GTHIANLLPLDKEEYVATVLCMKDFD---ANHSFLFATKKGMVKRSAVHLYRNYRPHGLI 632

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++V    +E++I L T  G  +RF  S +R   GR + GV+GI+L + D 
Sbjct: 633 AVNLRDGDELIAVREVDEESEIFLITHHGVAIRFACSEVRSM-GRGAAGVKGIALRQEDA 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S  I+     D                                               
Sbjct: 692 VVSCVIINGDGRDQ---------------------------------------------- 705

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +LTVSE+G+GKRT+   +R  +R GKGI    ++  ++ G ++    V++ D++I
Sbjct: 706 -----LLTVSEQGYGKRTAIDYYRQQSRGGKGIINMRLT--SKTGGVLGAMMVDETDELI 758

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++    ++R+   +IRI  RAT+GV + S   +  VV  +RI   E
Sbjct: 759 MLTSMHKMLRIGTADIRICGRATQGVKLVSLDSEATVVCFDRIVSEE 805



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 102/284 (35%), Gaps = 63/284 (22%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD+ DE++ +   +         K G   RF +S ++  A  +    R  +L + D++
Sbjct: 378 IALDNIDEVVRLIRASAT---PAEAKAGLMQRFELSEVQSQAILDMRLHRLTNL-ERDKL 433

Query: 736 ISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +    A++   +                R  +    +   S +    +E + +E   ++L
Sbjct: 434 LEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASPRRTEILESDPNEIDIEDL 493

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E+ ++T++  G+ KRT    ++   R GKG+   +V++ + +  L       ++  +
Sbjct: 494 IPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGANVAQKDFVTDL---MTGTNHQYL 550

Query: 854 ILVSDKGTLIRVPVNEI---RIASRATK-------------------------------- 878
           +L ++KG + ++ V +I   R  +R T                                 
Sbjct: 551 LLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYVATVLCMKDFDANHSFLFAT 610

Query: 879 -------------------GVVIFSTAKDERVVSVERIRESEIV 903
                              G++  +    + +++V  + E   +
Sbjct: 611 KKGMVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREVDEESEI 654


>gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S]
 gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
 gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi]
 gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S]
 gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi
           ATCC 33707]
          Length = 839

 Score =  850 bits (2195), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/910 (38%), Positives = 515/910 (56%), Gaps = 92/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +E     I  V I  EMQ+SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEEPSHDRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDNGYRPDRGYVKSARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ ++  DTVDF PNYDG  QEP VL +R PN+LVNG G
Sbjct: 121 GNDGAAAMRYTECRMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +     +DN     +  L+A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +RGV  IE++     QIV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IQDAYRTGRGSIRMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ +KR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 301 SKIEDQSSDRVGMRIVVVIKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV++RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVAHQLEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVART 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL  L R  I +
Sbjct: 421 GLM--------------------------DLLTVDEIQADAILAMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I+K EL  + ++    RRTRI+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILEKPERQRQIVKDELSEIVEKYGDDRRTRIIAADGDVTDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ ED V + F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTRTDLYRSQKRGGKGVKGAELKQEDIVKNFFVCSTHDWLLFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I +I+     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIQSIIHIKSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSRLADFDSNRSGGIVAINLRDEDELVGAVLCSSDDDLLLVSAKGQSIRFAATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+   + D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNQDDELLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   D+    R GKG+      
Sbjct: 723 -------------------------YLLVATSGGYAKRTPIEDYVAQGRGGKGVLTIQYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV    V+D+D++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 P--KRGTLVGAVIVDDDDELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRESEIV 903
           + R  +    
Sbjct: 816 IARNADEPEE 825


>gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
 gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884]
          Length = 804

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/888 (41%), Positives = 531/888 (59%), Gaps = 85/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+ M+Q G+  N+K+ K
Sbjct: 2   SQVLPVEITEEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A + GEV+ KYHPHG+ A+YDA+ R+AQDW+LR  L++GQGNFGS+DGDP AA RYTE 
Sbjct: 62  SAGVVGEVIKKYHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A  LL D+ K+TVDF+PN+DG+  EP VL A +PN+LVNG  GIAVGMAT++P H
Sbjct: 122 RLSQIALELLRDIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  VA+ID P+I LD +M  + GPDFPTG  +  + GI+ AYATGRGS+ +R  
Sbjct: 182 NLSEVIDALVAMIDRPEITLDEVMTYLPGPDFPTGGRLH-KGGIREAYATGRGSLKLRAK 240

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E+    R  +VVTEIPYQVNKA ++ +IA LV+ K+I DIA LRDESDRQG R+ IE
Sbjct: 241 VRQEE-KNGRVVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA+ DV+LNQL+++T+LQ+ F+VNM+A+   +P    L+ +++ ++  R +VV RRT
Sbjct: 300 LKRGANPDVVLNQLFKHTNLQTSFTVNMLAIVDGEPRVLPLLELMRHYLEHRRQVVTRRT 359

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA +RAHVL GL IA+ NLDEV+ +IR S +   A+  L+ R             
Sbjct: 360 RFELKKAEERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIAR------------- 406

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+EVQ +AIL++RL RLTGL R+ I+ E   L   I     IL  
Sbjct: 407 -------------FGLTEVQAQAILDMRLQRLTGLEREKIQAEHRELQETIAYLRAILED 453

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +RL G++K+ELL+VK+     RRT I E       ED I  E MV+T++  G++KR PL
Sbjct: 454 EARLWGVVKEELLAVKERHGDTRRTVINEFAGGFNPEDLIEDEPMVITMTAAGFLKRTPL 513

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG G      +DED  T LF+ + H  +LFF++ G VY+EKV+ LP  S QA
Sbjct: 514 EAYRAQGRGGVGVQASRSKDEDEATRLFVANMHDDLLFFTNKGRVYREKVFELPEASRQA 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  + +IL L + E + T++            + VFAT+ G +++  + ++  +  SG 
Sbjct: 574 RGVHIRSILPLAEDEEVATLLSVRGLTI---PGHFVFATRRGLIKKTPIREYQNLTASGL 630

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   D ++ V    ++ +++L T+ GQ +RF ++ +R   GR S GVRG+ L  GD
Sbjct: 631 IAINLVDGDTLIQVGVAQEDAEVILATRNGQAIRFALTEVRA-TGRASQGVRGVRLKDGD 689

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+ +V                                                    
Sbjct: 690 EVVSLIVVPKGWT----------------------------------------------- 702

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V  +G+GKRT   ++    R G G+     +   ++G L A+  V  ++ +
Sbjct: 703 ----GDLLAVGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTP--KVGQLAALLAVEGDEDL 756

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +++S +G  IR  V+++   SRAT GV I +  +++ + +   IR  +
Sbjct: 757 LVLSRRGLAIRTRVDQVAQYSRATSGVKIMNLQEEDEIAACFVIRPQD 804


>gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
 gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18]
          Length = 847

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/891 (40%), Positives = 542/891 (60%), Gaps = 86/891 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G   N+ Y KCAR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARV 61

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG++++Y AL RM QDW++R  L++GQGNFGSVDGD  AA RYTECRL K
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGMATNIPTHNLGE
Sbjct: 122 MGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGE 181

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+DGC A IDNP+I  D LME I  PDFPTGA I G  G+K+AY TGRG +V+R  + IE
Sbjct: 182 VIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRGRVVMRAKAEIE 241

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 ++IVVTEIPY VNK  ++E IA+LV+E ++  I+++ DE+ RQG R+V+++KR 
Sbjct: 242 SDES-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVKRD 300

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RR ++ L
Sbjct: 301 ANANVILNKLFKMTALQSSFSVNCIALVAGRPRLLSLRECIKYFVEHRHDVTIRRAQFDL 360

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++RAH+L  L  A  N+DEVVRIIR S  P  A++ L +R                 
Sbjct: 361 KKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKR----------------- 403

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        E+Q++AI+++RL++LTGL  D +  E   L   IK+  +IL++  R 
Sbjct: 404 ---------FDFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERC 454

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLGY+KR PL+ ++
Sbjct: 455 KEVMKEELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFK 514

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +P G   ++G+A
Sbjct: 515 EQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRA 574

Query: 618 LINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + N+LSL  G+ +   +     +D+   ++ YVVFATK G V++  L  + +   +G IA
Sbjct: 575 IQNMLSLEPGDSVNAFLRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--D 733
           + ++  DE++ V      N++++  + G+  RF  S IR   GR S GVRG+ L     D
Sbjct: 635 ININEGDEVVDVRLTNGHNELIIADRNGRACRFDESNIRTM-GRVSTGVRGMRLDDDGQD 693

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+ M +V                                                    
Sbjct: 694 EVVGMIVVNDPVK----------------------------------------------- 706

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
               + ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LVA+  V D++ +
Sbjct: 707 ----ETVMVVSEEGYGKRSQVEDYRLTNRGGKGVKTLNIT--DKTGKLVAIKNVTDDNDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIV 903
           ++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++  SE+ 
Sbjct: 761 MIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSEME 811


>gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191]
 gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191]
          Length = 840

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/913 (40%), Positives = 540/913 (59%), Gaps = 83/913 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E    S +     I S  I +EM+ SY+ YA++VI+GRA+PD+RDGLKP+HRR+L+GM
Sbjct: 1   MSEKENQSVDLF-GNIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+++NK + K AR+ G+VMGKYHPHG++AIYD+L R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  NEMGLKYNKSFKKSARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL++ A  +L+D+ K+TV F  NYDGS QEP VL A+ PN+LVNG  
Sbjct: 120 DGDMAAAMRYTEVRLERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNL EV D  + VI NP +    LM II+GPDFPTGA+I GR GI + 
Sbjct: 180 GIAVGMATNIPTHNLSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIICGRKGIFDY 239

Query: 241 YATGRGSIVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           + TG+GS+ ++  + IE+   G R  IVVTEIPYQVNK  ++E IA LV++K++ DIAD+
Sbjct: 240 FETGKGSVKVQARAEIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADI 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G R+VIE+KR   A V+LN LY++T LQ+ FSVNM+A+   +P    +  ++K
Sbjct: 300 RDESDRRGMRLVIEVKRDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGRPRILPIKEVMK 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  R+EVV  RT++ LNKA+ R H+L GL IA+ANLD+V++IIR + +P  A+     
Sbjct: 360 CYVKHRKEVVTARTRFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAK----- 414

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q++AIL++RL +LT L    I  E   
Sbjct: 415 ---------------------FALIREFALSEPQSQAILDMRLHQLTQLSSASIEKEQKE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDM 538
           L   I E   IL    ++L II  EL  +K +  T R+T I      DM  ED I  ED+
Sbjct: 454 LLALIAELKGILEDPQKVLAIIVDELKGLKKDYGTERKTEISNTELSDMTMEDLIEEEDV 513

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T+S+ GY KR+PL  YR Q RGGKG  G   ++EDF+  LF+ STH ++L F++ G V
Sbjct: 514 VITLSNDGYAKRIPLDTYRTQNRGGKGVIGGKTKEEDFIEHLFVTSTHATILMFTTRGRV 573

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNV 657
           +  + + +P G+  ++GKA++N+L ++  E+IT+ +   + +   +   Y+   T+ G +
Sbjct: 574 FSLRAYEIPEGNRLSKGKAIVNLLQISNEEKITSAVAIEDFDPKNSGETYLTMCTRFGLI 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R +L DF  I +SG IA+ L+  D + SV+    ++D+++ T+ G+ +RF    IR   
Sbjct: 634 KRVELGDFANIRKSGIIAIGLEDGDVLTSVQMTHGKSDLIIATRDGKAIRFDEEQIRAM- 692

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRGI L K D V+ M                                       
Sbjct: 693 GRQAKGVRGIRLGKDDIVVGM--------------------------------------- 713

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L+V E G+GKRT   ++R  NR G G      ++ N 
Sbjct: 714 -----------EHALKDAPGPDVLSVCENGYGKRTEFTEYRKQNRGGSGTITIKTTERN- 761

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V +  V+++  ++++++ G  +R+   EIR   R  +GV +   A+ +++  +  +
Sbjct: 762 -GKVVGIKLVDESKDLMVITENGMAVRIRCEEIRSVGRNAQGVRLVKLAESDKIARIAPV 820

Query: 898 RESEIVDEAESTE 910
            +    +     E
Sbjct: 821 IKDNDEEACGGEE 833


>gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
 gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA]
          Length = 842

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/891 (40%), Positives = 548/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID++ALM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 86/212 (40%), Gaps = 18/212 (8%)

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISM-AIVLHADADYDERICYM 755
            G   RF ++ I+      S  +  + L +      DQ+ +    +    A  +E +   
Sbjct: 405 SGLMERFELTEIQ------SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVND 458

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +      +    + ++    +  S +  +  E   ++    ++ I+T+S  G+ KRT   
Sbjct: 459 ELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLS 518

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +FR  NR G G +    ++  +   +  ++P   ++ ++  + KG    + V EI   ++
Sbjct: 519 EFRAQNRGGVGSKG---TETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 876 ATKGVVIFST---AKDERVVSVERIRESEIVD 904
            +KG  I +      D+ V +  R++     D
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQD 607



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 173/504 (34%), Gaps = 33/504 (6%)

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + E I   V  +  V I   + +  +   R  I      ++D I   +    + ++   
Sbjct: 343 NLKELIKYFVEHRHDVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPND 402

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
                +  ++        I++  +     ++  +      + + +   L  + +      
Sbjct: 403 AISGLMERFELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCR 462

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY----LSEVQT 454
           +V++        +       +  +++ +        DD      S         LSE + 
Sbjct: 463 KVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRA 522

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +    +          D + +   +        +            + +     K+   +
Sbjct: 523 QNRGGVGSKGTETRDEDFVEHIYPATMHN--TMMFFTQKGKCYWLKVYEIPEGTKN---S 577

Query: 515 PRRTRIVEGLLDME------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
             R       +D +            ++   +    V+  +  G +K+  L  Y   R+ 
Sbjct: 578 KGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQN 637

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G   + + +R++D V ++ + + +  ++  +  G   +     + +    A G   +  L
Sbjct: 638 G--VNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMT-L 694

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
             +  + +  ++   +         ++  ++ G  +R+ + D+ + NR GK    ++  D
Sbjct: 695 DEDGQDEVVGMICIKD----PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITD 750

Query: 683 EI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISM 738
           +    +++++ T END+++  K G  +R  ++ +R+  GR + GVR I+L K  D++ S+
Sbjct: 751 KTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIM-GRATQGVRLINLEKRNDEIGSV 809

Query: 739 AIVLHADADYDERICYMKHMSAQR 762
             V     +              +
Sbjct: 810 CKVTSETEEDIITEEDENISETPQ 833


>gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 875

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/910 (39%), Positives = 517/910 (56%), Gaps = 96/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +      E   I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MTETLPP----EHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WSLR  LI+GQGNFGS 
Sbjct: 57  FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSS 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDFR NYDG  QEP VL +R+PN+LVNGG 
Sbjct: 117 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  ++NP+   D L+      I+GPDFPT A+ILG +G
Sbjct: 177 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  +E+ +  R  +VV+E+PYQVN   ++E IA LVR+ +I  I
Sbjct: 237 IEDAYRTGRGSIRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+ DES+ R G R+VI +KR A A V+LN L+++T LQ  F VNM+AL    P    L 
Sbjct: 297 ADIADESNSRSGMRIVITIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDDVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +V  + +V+VRRT++ L KA +RAH+L GL  A+  LDEV+ +IR SP+ + AR 
Sbjct: 357 QIIRHYVKHQVDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARP 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+++L RL  L R  I +
Sbjct: 417 GLMS--------------------------LLEIDEIQATAILDMQLRRLAALERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            L  + +EI +  DIL    R   II+ EL+ + D+    RRT+I+    D+  ED I +
Sbjct: 451 TLAEIELEIADLKDILEKPERQRSIIRDELMEIVDKYGDDRRTQIIPFDGDVSVEDLIAQ 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 511 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I  ++  P  E      Y+V ATK G
Sbjct: 571 GRVYRAKAYDLPEANRNARGQHVANLLAFQPDEQIAQVIEIPNYEV---APYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ KL+DF      G IA+ L   DE++       E+D+LL +  GQ +RF  +   +
Sbjct: 628 LVKKTKLTDFDSNRAGGLIAINLREGDELMGAVLAAAEDDLLLVSAGGQSIRFHATDEAL 687

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+    GD+++ +++V                                
Sbjct: 688 RPM-GRPTSGVLGMRFNDGDELLGISVVKP------------------------------ 716

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  ++F+L  ++  + KRT   D+ +  R GKG+      
Sbjct: 717 -----------------------DKFLLVATDGAYAKRTPIEDYPVQGRGGKGVLTIQ-- 751

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             ++ G LV    V+++D++  ++  G +IR P  ++R A R TKGV + +      +++
Sbjct: 752 HDSKRGRLVGALIVDEDDELFAITSSGGVIRTPARDVRKAGRQTKGVRLMNLGDGTTLLA 811

Query: 894 VERIRESEIV 903
           V R  +    
Sbjct: 812 VARNADEGSD 821



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 13/226 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+  L+ + + R GG     + +R+ D +    + +    +L  S+ G
Sbjct: 618 PYLVLATKRGLVKKTKLTDFDSNRAGG--LIAINLREGDELMGAVLAAAEDDLLLVSAGG 675

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +  N G+ +  I           + +++ AT    
Sbjct: 676 QSIRFHATDEAL-RPMGRPTSGVLGMRFNDGDELLGISVVK------PDKFLLVATDGAY 728

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + D+    R GK  + +    +    +      +++++   T  G  +R P   +
Sbjct: 729 AKRTPIEDYPVQGRGGKGVLTIQHDSKRGRLVGALIVDEDDELFAITSSGGVIRTPARDV 788

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           R  AGR + GVR ++L  G  ++++A      +D           +
Sbjct: 789 R-KAGRQTKGVRLMNLGDGTTLLAVARNADEGSDVANGGEEASDAA 833


>gi|322437228|ref|YP_004219440.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164955|gb|ADW70660.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX9]
          Length = 973

 Score =  849 bits (2194), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/943 (41%), Positives = 563/943 (59%), Gaps = 45/943 (4%)

Query: 6   ISSDEEEEKGI--------TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
              D+ +   +        TS++I +EM+ SYL Y+++VI+GRA+PD+RDGLKPVHRRIL
Sbjct: 31  TPPDDPKYGQVQGRGALIMTSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRIL 90

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +GM +MG+++NKKY K A++ G VMG YHPHG++AIYD + R+AQ +SLR L+++GQGNF
Sbjct: 91  YGMQEMGLQFNKKYTKSAKVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYLMVDGQGNF 150

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD PAA RYTE RL + A  +L D+  DTVDF PNYD S  EP VL AR PN+++N
Sbjct: 151 GSVDGDSPAAMRYTESRLTRLAGEMLADIDMDTVDFVPNYDESTLEPSVLPARVPNLIIN 210

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILG 233
           G  GIAVGMATNIP HNL EVV  C++++     +   DL+ +++ + GPDFPTG  + G
Sbjct: 211 GSSGIAVGMATNIPPHNLTEVVSACISLLQKSPQDTTPDLELVLQHVLGPDFPTGGTLFG 270

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           RT I  AY TGRG  ++R   HIE  SG R+ IVV EIPYQVNK+ ++E+IAELV E  I
Sbjct: 271 RTNIPQAYRTGRGRFMMRAKCHIENISGGRQAIVVDEIPYQVNKSKLIERIAELVNEGII 330

Query: 294 VDIA--DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
            DIA  + RDESDR G R+VI +KRGA   ++LNQL+++T +Q  FS+  +A++  +P+ 
Sbjct: 331 TDIARDEFRDESDRDGMRIVIGIKRGAEHQIVLNQLHKHTQMQESFSMIFLAVHNGQPKE 390

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L   ++AF+  R EVV RRT +LL KARDR  +L+GL IA+ +LD+V+RIIR S +  
Sbjct: 391 LPLDKAIRAFLDHRIEVVRRRTAFLLAKARDREAILLGLQIALDHLDQVIRIIRQSSSRA 450

Query: 412 TARRELMQRSWNASDIKDLID----------------LIDDSSYTIGSDGTMYLSEVQTR 455
            AR  L     N +      +                LI       G+  T+ L+  Q  
Sbjct: 451 DARENLFAYFSNRTITLRGTELRGITLDPAKYGIDPRLIPPPPANAGTGATLILAYRQID 510

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILEL+L RLT L  D++  EL  +   I E   IL+S ++L  +I  EL  ++D+   P
Sbjct: 511 AILELQLYRLTQLSIDELLKELALIRDNIAEFESILNSPAKLRQVIADELAQIRDKYGDP 570

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RRT I++   ++  ED I  E + VTVS+ GY+KR P+S YR QRRGG GR G+  RDED
Sbjct: 571 RRTIILDETAELGLEDLIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRIGMKTRDED 630

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           FV  L I STH  +L F++ G VY  K++ +P      +GKA+ +++ L  GE++ TI+P
Sbjct: 631 FVAQLIIESTHAYLLCFTNSGRVYWLKIYEIPDTGITGKGKAMASLVDLQPGEKVVTILP 690

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
                    N  ++FAT++G V++  L DF  +   G IA+ +D  DE+++    T  + 
Sbjct: 691 VKNLTEEGKN--ILFATRNGTVKKTPLKDFSNVMSRGIIAIGIDKEDELITARITTGSDV 748

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           + L T  G  +RF    +R   GR + G RGI+L KGD VI  A+    +A   +R    
Sbjct: 749 VFLATHDGMAIRFNEQDLRPM-GRPATGNRGINLRKGDFVIGAAVTPSPEAREKQRRERA 807

Query: 756 KHMSAQRRLISGDTE----------EITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           + +    +L    TE          + + +     V     ++  ++L L    ILTVSE
Sbjct: 808 EALGLLAQLEDAITEATDASLVLEGDPSDVAAAPPVSSAKLDKLDEKLGLTPCLILTVSE 867

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            GFGKRT    +R+ +R G G+         + G + ++  V+D  +++L+S  G +IR+
Sbjct: 868 NGFGKRTDVDRYRLQSRGGTGVINMKTGT--KTGKVTSISLVDDTTEMMLISQFGKIIRI 925

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
              ++R A R+T GV +    +D++V +   I   +  ++ E+
Sbjct: 926 DTKQVRAAGRSTSGVKLLDLDQDDKVAAAMTIPPEDPKEKLEN 968


>gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
 gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella
           multiformis DSM 16608]
          Length = 848

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/908 (39%), Positives = 548/908 (60%), Gaps = 86/908 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   ENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD  A
Sbjct: 63  SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D + +EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNPDI  D LME I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE      ++IVVTEIPY VNK  ++E IA+LV+E +I  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIESDES-HDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL G +P   +L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVGGRPRLLSLRECIKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RR ++ L KA++RAH+L  L  A  N+DEVV +IR S  P  A++ L +R      
Sbjct: 362 DVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEER------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                   E+Q++AI+++RL++LTGL  D +  E   L   IK+
Sbjct: 416 --------------------FGFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKD 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL +  R   ++K EL  VK++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILDNPERCKEVMKAELQEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+LSL+ G+ +   +     ++E   ++ +VVFATK G V++  L  
Sbjct: 576 PEGDKNSKGRAIQNMLSLDPGDSVNAFLRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V     +N++++  + G+  RF  S IR   GR S GV
Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGKNELIMADRNGRACRFDESKIRSM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +   D+V+ M +V                                         
Sbjct: 695 RGMRLDEDGQDEVVGMIVVNDPV------------------------------------- 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + ++ VSE+G+GKR+   D+R++NR GKG++  +++  ++ G LV
Sbjct: 718 --------------NETVMVVSEEGYGKRSQVADYRLTNRGGKGVKTLNIT--DKTGRLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           A+  V D + +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++  SE
Sbjct: 762 AIKNVTDANDLMIINKSGIVIRMSVAECRVMGRATQGVRLINLAKKNDVIASVCKVMSSE 821

Query: 902 IVDEAEST 909
           +  + E  
Sbjct: 822 MESQVEEE 829


>gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 835

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/907 (41%), Positives = 567/907 (62%), Gaps = 88/907 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  + +    I   +I++EM+ S+++YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+
Sbjct: 1   MEDNTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGM 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG+ A+YD++ RMAQ++S R +LI+G GNFGS+DGD  
Sbjct: 61  TSDKPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+TVDF  NYDG  +EPVVL +R+PNVLVNGG GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATG 244
           MATNIP HNLGEV+D  +A+IDNPDI +  LM + I GPDFPTGA++LGR+GIK+A+ TG
Sbjct: 181 MATNIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGALLLGRSGIKSAFETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+V+R    IE+    + +I+++EIPYQVNKA ++EKIA LVR+K I  I DLRDES+
Sbjct: 241 RGSVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESN 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+V+EL+R   A+V+LNQLYR T+LQS F VNM+AL   +PE   L+ +L  +   
Sbjct: 301 REGIRIVVELRREVQAEVVLNQLYRLTALQSSFGVNMLALVNGRPELLNLLQVLSHYRDH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + E+V RRT++ L KA DRAH+L GL IA+ ++DEV+ IIR S +   A   L +     
Sbjct: 361 QIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSSKDDPEAITRLNE----- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E+Q++A+L+++L RLTGL RD + NE N L I I
Sbjct: 416 ---------------------AFDLTEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL++  RLL IIK EL+ +K +    RR+ IVE  +DM DED I  ED+VVT++ 
Sbjct: 455 VDLKDILANHDRLLTIIKDELIEIKTKFGDDRRSEIVEADIDMLDEDLIPVEDIVVTMTM 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR  +  +  Q RGGKG  G+   DED V     +STH  +L F++LG VY+ + +
Sbjct: 515 NGYIKRTTVDSFNTQNRGGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGF 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  ++G  ++N+L+L +GE + T++   +D+    + Y  F TK G V+R ++ +
Sbjct: 575 NVPSSSRTSKGIPVVNLLNLTEGETVKTLVKVAKDD---ESKYAFFVTKQGIVKRVEVQE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I ++GKIA+ L   DE++ V     +N+I++    G+ VRF  + +R   GR + GV
Sbjct: 632 FESIRQNGKIAITLREDDELVGVRMTNGDNEIIIGGSNGKAVRFDENEVRSM-GRTASGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G ++ +G +V+ +A                                             
Sbjct: 691 IGFNVDEG-EVVGIA--------------------------------------------- 704

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      + Q+IL V+EKG+GKRT   ++R + R  KG++  ++++ N  G LV++
Sbjct: 705 --------TDREGQYILAVTEKGYGKRTDIAEYRRTKRGAKGVKTVNITEKN--GNLVSL 754

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EIV 903
             VN +++ +++S++GT+IR  ++ I I  R+T GV + +  + + V  V  ++ + E  
Sbjct: 755 RAVNGDEEALIISNEGTVIRTEISNIGIYGRSTIGVRLINVGETDSVSQVAILQPTVEEP 814

Query: 904 DEAESTE 910
           DE ++T+
Sbjct: 815 DEEQTTD 821



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 16/230 (6%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V+  G VKRV +  + + R+ GK    + +R++D +  + + +    ++   S G   
Sbjct: 616 FFVTKQGIVKRVEVQEFESIRQNGKI--AITLREDDELVGVRMTNGDNEIIIGGSNGKAV 673

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +     +      A G    N                    +     Y++  T+ G  +R
Sbjct: 674 RFDENEVRSMGRTASGVIGFN----------VDEGEVVGIATDREGQYILAVTEKGYGKR 723

Query: 660 NKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             ++++ +  R  K    ++       ++S+     + + L+ +  G  +R  IS I   
Sbjct: 724 TDIAEYRRTKRGAKGVKTVNITEKNGNLVSLRAVNGDEEALIISNEGTVIRTEISNI-GI 782

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            GR+++GVR I++ + D V  +AI+     + DE     +      + I 
Sbjct: 783 YGRSTIGVRLINVGETDSVSQVAILQPTVEEPDEEQTTDQVEPVNEKEIE 832


>gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
 gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A]
          Length = 854

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/906 (39%), Positives = 551/906 (60%), Gaps = 63/906 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I    +++EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   K +
Sbjct: 4   PQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  L++G GNFGS+D DPPAA RYT
Sbjct: 64  RKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMRYT 123

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL+  +   LL D+  +TVDF  N+DGS +EPVVL +R P +L+NG  GIAVGMATNI
Sbjct: 124 ECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMATNI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+I NP+++   L++II GPDFPTG  ILGR+GI  AY TGRGSI +
Sbjct: 184 PPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQILGRSGIHEAYMTGRGSITM 243

Query: 251 RGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           RGV+ IE    +   +R+ I++T++PYQ NK+A++E+IA++V +KRI  I+D+RDESDR+
Sbjct: 244 RGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDESDRE 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKR A + V+LN +Y+ T +Q+ F  NM+AL   +P+  TL   L  F++FR 
Sbjct: 304 GMRIVIELKRDAHSRVVLNNIYKQTPVQANFGANMLALVKGEPQLLTLKNFLTVFISFRV 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E ++RR+KY L KA +R H+L GL IA+ +LD ++ IIR + +  TA+++L+ +      
Sbjct: 364 ETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQ------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQ  AIL+++L RLT L  + I  E   L I+I  
Sbjct: 418 --------------------FELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIAN 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DILS + R+  II++EL+ +K+   TPR T I+    ++ D D I  E  ++ ++  G
Sbjct: 458 LNDILSKKERIEAIIEEELVQIKNIHGTPRCTEIIHDEGEIVDTDLIANEQAIILLTEQG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P+S + AQ+R  +G++G  +++ D V        H  VL FS  G VY    +++
Sbjct: 518 YIKRMPVSSFDAQQRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQI 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  +RG  ++ +LS+++ E+IT+I+   E +    ++++V  T+ G +++  LS F 
Sbjct: 578 PSSSRTSRGVPIVQMLSISKSEKITSIISVSEFK---EDIFLVMLTRQGYIKKTALSAFS 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGV 724
            I  +G IA+ L   D++  V    +E+ ++L T+LG  + F      +R   GR + GV
Sbjct: 635 NIRTNGLIAISLGEGDQLRWVRLTREEDSVILGTRLGMAIHFHADHQQLRPL-GRATRGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L K D++ISM I+                        +  T  +   +++  V   
Sbjct: 694 KSMRLKKKDELISMDILS-----------------------AQVTIGVEESQDNEEVLEI 730

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             EE  ++      +IL ++ KG+GKR     FR+  R+G G+RA      +    L ++
Sbjct: 731 EPEELTEKETSLGPWILAITNKGYGKRIPITQFRLQRRAGMGVRAIKF--KSGKDNLTSL 788

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             VN  D++++VS++G +IR  V  I + SR+  GV +    +D+ + +V  +      +
Sbjct: 789 RVVNAEDELMIVSNRGIIIRQAVKAISLQSRSATGVRVQRLDEDDAIAAVALVPPV-PEE 847

Query: 905 EAESTE 910
           + E+ E
Sbjct: 848 DGENEE 853


>gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
 gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697]
          Length = 842

 Score =  849 bits (2193), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/891 (40%), Positives = 548/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A IDN DID+++LM  ++ PDFPTG  I G +G++ AY TGRG +V+R
Sbjct: 183 THNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS   ++I+VTEIPY VNKA +++ IA+L  EKRI  I++  DESDR+G R+V
Sbjct: 243 AKAEIETTST-HDKIIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKELIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 86/212 (40%), Gaps = 18/212 (8%)

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISM-AIVLHADADYDERICYM 755
            G   RF ++ I+      S  +  + L +      DQ+ +    +    A  +E +   
Sbjct: 405 SGLMERFELTEIQ------SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVND 458

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +      +    + ++    +  S +  +  E   ++    ++ I+T+S  G+ KRT   
Sbjct: 459 ELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLS 518

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +FR  NR G G +    ++  +   +  ++P   ++ ++  + KG    + V EI   ++
Sbjct: 519 EFRAQNRGGVGSKG---TETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 876 ATKGVVIFST---AKDERVVSVERIRESEIVD 904
            +KG  I +      D+ V +  R++     D
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQD 607



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 173/504 (34%), Gaps = 33/504 (6%)

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + E I   V  +  V I   + +  +   R  I      ++D I   +    + ++   
Sbjct: 343 NLKELIKYFVEHRHDVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPND 402

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
                +  ++        I++  +     ++  +      + + +   L  + +      
Sbjct: 403 AISGLMERFELTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCR 462

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY----LSEVQT 454
           +V++        +       +  +++ +        DD      S         LSE + 
Sbjct: 463 KVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRA 522

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +    +          D + +   +        +            + +     K+   +
Sbjct: 523 QNRGGVGSKGTETRDEDFVEHIYPATMHN--TMMFFTQKGKCYWLKVYEIPEGTKN---S 577

Query: 515 PRRTRIVEGLLDME------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
             R       +D +            ++   +    V+  +  G +K+  L  Y   R+ 
Sbjct: 578 KGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQN 637

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G   + + +R++D V ++ + + +  ++  +  G   +     + +    A G   +  L
Sbjct: 638 G--VNAITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMT-L 694

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
             +  + +  ++   +         ++  ++ G  +R+ + D+ + NR GK    ++  D
Sbjct: 695 DEDGQDEVVGMICIKD----PEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITD 750

Query: 683 EI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISM 738
           +    +++++ T END+++  K G  +R  ++ +R+  GR + GVR I+L K  D++ S+
Sbjct: 751 KTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIM-GRATQGVRLINLEKRNDEIGSV 809

Query: 739 AIVLHADADYDERICYMKHMSAQR 762
             V     +              +
Sbjct: 810 CKVTSETEEDIITEEDENISETPQ 833


>gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
 gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108]
          Length = 842

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/891 (40%), Positives = 547/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRLQK    ++ DL K+TVD + N+D S QEP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C++ IDN +ID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  S   ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 AKAEIETGST-HDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTLLQTSFGVNNVALVHGRPRLLNLKDLIKYFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   L++R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ +KD+    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RDEDFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YVVF TK+G V++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   D                                          
Sbjct: 695 DEDGQDEVVGMICIKDPDT----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    A  +E +   +      +    + ++    +  S +  +  E   ++    ++ I
Sbjct: 444 IQKQIAHLEEILVNDELCRKVIKDELIEIKDKYGDERRSEIVYSSEEFNPEDFYADDEMI 503

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S  G+ KRT   +FR  NR G G +    ++  +   +  ++P   ++ ++  + KG
Sbjct: 504 ITISHMGYIKRTPLSEFRAQNRGGVGSKG---TETRDEDFVEHIYPATMHNTMMFFTQKG 560

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
               + V EI   ++ +KG  I +      D+ V +  R++     D
Sbjct: 561 KCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQD 607



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 106/238 (44%), Gaps = 12/238 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VV  +  G VK+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVVFCTKNGIVKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +     +   ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PDTETIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +  GR + GVR I+L K  D++ S+  V   + + +               I+   EE
Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEEEEIAEEDENISDNSLNEINNKNEE 842


>gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
 gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium
           gleum ATCC 35910]
          Length = 865

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/894 (40%), Positives = 543/894 (60%), Gaps = 86/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV  N+
Sbjct: 2   QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQDWSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 62  KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+K +  +L DL K+TVDF+ N+D S QEP V+  + PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLKKISDEVLSDLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E VD   A IDN +I +D LM+ I  PDFPTG +I G  G+++A+ TGRG +V
Sbjct: 182 MAPHNLSESVDAICAYIDNKEITIDELMQHIIAPDFPTGGIIYGYDGVRDAFHTGRGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   + ++   +R  I+VTEIPYQVNKA M+ + AELV++++I  I ++RDESDR+G R
Sbjct: 242 LRAKVNFDEIG-NRNAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V ELK  A  +V+LN LY+YT+LQ+ FSVN +AL   +PE+  L  I+  FV  R EV+
Sbjct: 301 IVYELKNDAIPNVVLNLLYKYTALQTSFSVNNIALVHGRPEQLNLKDIIHHFVEHRHEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           VRRT++ L KA++RAH+L G          LD  + IIR S NP+ A+  L++       
Sbjct: 361 VRRTQFELKKAKERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIE------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AIL+LRLARLTG+  D IR+E +++  EI  
Sbjct: 414 -------------------AFELSDIQAQAILDLRLARLTGMELDKIRDEYDAIMKEIAN 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++  R   IIK+ELL +K++    RRT I     +M  ED I  E +V+T+SH G
Sbjct: 455 LEDILANEPRRFQIIKEELLEIKEKYGDERRTEIDYSGGEMSIEDIIPNESVVLTISHAG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS Y+ Q RGG G      RD DF+  +   + H  +LFF+  G  Y  +V+ +
Sbjct: 515 YIKRTSLSEYKIQSRGGVGNKAATTRDSDFLEYIVSATNHQYMLFFTEKGRCYWLRVFEI 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           P GS  A+G+A+ N++++   ++I   +      D    N + VV  TK+G +++  L  
Sbjct: 575 PEGSKTAKGRAVQNLINIEPDDKIKAYIRTNNLKDSEYVNQMSVVMVTKNGTIKKTSLEA 634

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+++   D++L        + I++ TK G+C+RFP   +R   GR S+GV
Sbjct: 635 YSRPRVNGVNAIEIRDNDQLLGAYLTNGNSQIMIATKNGKCIRFPEEKVREV-GRGSIGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  GD+ I M +V   +                                       
Sbjct: 694 RGILLEDGDEAIGMIVVNDVE--------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        + +L VSEKG+GKRT+  D+RI+NR GKG+   ++++  + G L+A+
Sbjct: 715 ------------NETVLVVSEKGYGKRTAVEDYRITNRGGKGVITLNITE--KTGNLIAI 760

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V D D +++++  G  IR+ ++E+R+  R T+GV + +  K++ + ++ ++ 
Sbjct: 761 QNVTDEDGLMIINKSGVAIRMGMDEMRVMGRNTQGVKLINLKKNDEIAAIAKVE 814



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 109/247 (44%), Gaps = 13/247 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
            V +  VV V+  G +K+  L  Y   R  G   + + +RD D +   ++ + ++ ++  
Sbjct: 612 YVNQMSVVMVTKNGTIKKTSLEAYSRPRVNG--VNAIEIRDNDQLLGAYLTNGNSQIMIA 669

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +    ++      + G   +  + L  G+    ++   +      N  V+  +
Sbjct: 670 TKNGKCIRFPEEKVREVGRGSIG---VRGILLEDGDEAIGMIVVND----VENETVLVVS 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + D+   NR GK  + L+  ++    ++++  T E+ +++  K G  +R  
Sbjct: 723 EKGYGKRTAVEDYRITNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINKSGVAIRMG 782

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +RV  GRN+ GV+ I+L K D++ ++A V       ++     +        +  + 
Sbjct: 783 MDEMRVM-GRNTQGVKLINLKKNDEIAAIAKVEMDKDVEEDSEELEETEEGVVGSLFDNQ 841

Query: 770 EEITSLK 776
           E+ T+ +
Sbjct: 842 EDNTAPQ 848


>gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680]
 gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680]
          Length = 811

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/895 (41%), Positives = 542/895 (60%), Gaps = 85/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  +  + I  E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   + G+   K
Sbjct: 2   QASQTKVLPIDIEKEVKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A + G V+G+YHPHG+AA+YDA+ RMAQD+S+R  L++G GNFGSVDGD PAA R
Sbjct: 62  PHRKSANLVGLVLGQYHPHGDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  +L D+ KDTVDFRPNYD + QEPVVL AR PN+L+NG  GIAVGMAT+
Sbjct: 122 YTEARLTALAVEMLRDIEKDTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+G + +++NP+  +D LM  I+GPDFPT  +I+G  G++ AY TGRGS+ 
Sbjct: 182 IPPHNLTEVVEGLIHLLENPEATVDELMRYIKGPDFPTAGLIMGTRGMRQAYRTGRGSVT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+  G R  IVVTEIPY VNKA ++E+IAELV+EK+I  I DLRDESDR+G R
Sbjct: 242 VRGRCEIEEKKGGRTSIVVTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V++++R  S  VILN+LYR T LQ  F + ++AL   +P+   L  +L  ++  R EV+
Sbjct: 302 IVMDIRRDISPSVILNKLYRNTQLQDNFGITLLALVDGEPQVLNLKEMLNQYLNHRREVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L  ARDR H++ GL IA+ NLDEVV IIR SP+ +TAR  LM R         
Sbjct: 362 RRRTEFDLKVARDRLHIVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E+Q  AI+E+RL +LTGL R+ +  E   L   I +  D
Sbjct: 413 -----------------FDLTEMQAEAIVEMRLRQLTGLERNKLEEEYRELVGRISDLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL    R+  IIK++L+ +K      RRT I E     E ED I  E +VVT+S+ GY+K
Sbjct: 456 ILRRPERVQAIIKEDLIDIKTRFGDKRRTEIREEDASFEAEDLIEEESIVVTLSNRGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS YR+QRRGGKG +G  +R EDF TD+F+ +T +++LFF++ G VY  K +++P  
Sbjct: 516 RQPLSTYRSQRRGGKGVTGTAIRSEDFATDIFVTTTLSTLLFFTNHGRVYSLKAYQVPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG  +IN L LN GE++ T++     +      ++V AT+ G V++  + +F QI 
Sbjct: 576 SRQSRGTPVINFLRLNPGEKVNTVISVNRFD---AGQHLVMATRTGMVKKVPIDEFRQIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           RSG IA+ L ++DE++ V+   + + ++L T  G  + F    +RV  GR + GVRGISL
Sbjct: 633 RSGIIAINLRNQDELVGVQKIYKGDRLVLVTGRGYSIVFDEGDVRVM-GRGAAGVRGISL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+VI +                                                   
Sbjct: 692 EQGDKVIDID-------------------------------------------------- 701

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +   +L V+E+G+GKRTS  + R+  R GKG++   +S+  + G LV    V  
Sbjct: 702 ---KYKEGADMLLVTERGYGKRTSLQELRLQKRGGKGLKTIQISE--KTGELVGGKAVFP 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            ++ + ++  G +IR+ V+++    R ++GVV+     ++ +VS+ R +  +  +
Sbjct: 757 KEEFVALTGAGFVIRLKVDDVPRQKRYSRGVVVMRCEDNDHIVSIARFKSEDEEE 811


>gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
 gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492]
 gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36]
          Length = 842

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/891 (40%), Positives = 548/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  S   ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 ARAEIETGST-HDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A ++LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQR 762
           +  GR + GVR I+L K  D++ S+  V   + +          + + +
Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEEELIEEGEENTLESPQ 833


>gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 840

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/913 (38%), Positives = 545/913 (59%), Gaps = 95/913 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I D+M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  Y
Sbjct: 3   EGEKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQDW++R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+++ A  +L D+ K+TVD R N+D + +EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG VA ++N +I +D L+E I+ PDFPTG  I G  G++ A+ TGRG I+IR
Sbjct: 183 PHNLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIYGYDGVREAFKTGRGRIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G +H E+   +R+ I+VTEIPYQVNKA M+++ A+LV+E ++  IAD+ DE+ + G R+V
Sbjct: 243 GKAHFEEVD-NRDCIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+ A  +V+LN L+++T LQS FSVN +AL   +PE+  L  ++  FV  R +VV R
Sbjct: 302 YVLKKDAIPNVVLNNLFKHTPLQSSFSVNNIALVNGRPEQLNLKDLIYHFVEHRHDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KA+++AH+L G          LD  + IIR S NP+ A+ EL++         
Sbjct: 362 RTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKE-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q++AIL+LRLARLTG+  + IR E   +   I +  
Sbjct: 414 ------------------FELSEIQSQAILDLRLARLTGMELNKIREEYEQIMALIMDLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK EL+ VK +    RR+ I     D+  ED I  E +V+T+S+ GY+
Sbjct: 456 DILAHKERRTEIIKNELIEVKAKYGDDRRSIIEYSGGDISMEDIIPNEQVVITISNAGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P++ Y+ Q RGG G+     RD+DF+  LF+ + H  +LFF+  G  +  +V+ +P 
Sbjct: 516 KRTPVNEYKTQARGGVGQKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G    +G+A+ N+++++  + +   +   +  D+   N+ YV+ ATK G +++  L  + 
Sbjct: 576 GGRNTKGRAIQNLINIDSEDNVKAFICTQDLKDQEYINSHYVIMATKKGIIKKTALEQYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G +A+ +   DE+L     T  + +++  K G+ +RFP   +R   GR+  GVRG
Sbjct: 636 RPRQNGIVAITIKEDDELLEARLTTGSSQVMMAVKSGKAIRFPEEKVRSV-GRSGSGVRG 694

Query: 727 ISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           IS    K D+VI M  + +                                         
Sbjct: 695 ISFDDEKNDEVIGMITIENP---------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINE 837
                      KE+ +L VSE G+GKRT   D       +RI+NR GKG++   +++  +
Sbjct: 715 -----------KEETVLVVSENGYGKRTFIDDPETGEAVYRITNRGGKGVKTISITE--K 761

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA+  V+  D +++++  G  IR+ V  +R+  RAT+GV + +  +++ + +V ++
Sbjct: 762 TGKLVAIKSVSQEDDLMIINKSGMAIRMSVEALRVMGRATQGVRLINIKENDSIAAVAKV 821

Query: 898 RESEIVDEAESTE 910
            + +  +     E
Sbjct: 822 MKEDDNEIDSGEE 834


>gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716]
          Length = 836

 Score =  849 bits (2192), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 546/909 (60%), Gaps = 89/909 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++E    IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GS
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM         
Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL+LRL RLTGL R+ I +E   L   I + 
Sbjct: 413 -----------------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ + R+  II  EL+ ++++    RRT +    + ++EDED I  ED++VT++H G
Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F 
Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINIAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
             L  GD +I  A +                                             
Sbjct: 694 ARLRDGDYLIGAAPLN-------------------------------------------- 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++  +L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  
Sbjct: 710 ---------EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTT 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE- 905
           V  ++ +++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +     + 
Sbjct: 759 VQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDP 818

Query: 906 ----AESTE 910
               AE  E
Sbjct: 819 TEASAEEAE 827



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 17/231 (7%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V+  G VKR P++ ++  R  G     + + + D + ++ IV    +++  + LG   
Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 674

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV  +      A   A +    L  G+ +    P  ED+       V+  ++ G  ++
Sbjct: 675 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 725

Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
              S++  I   G + +K     +    +  + T   + D+++ T  G  +RF + ++  
Sbjct: 726 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 783

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             GR+++GV  I +     V +M  V    A+ D      +         +
Sbjct: 784 QTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPN 834


>gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
 gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4]
          Length = 930

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/939 (39%), Positives = 540/939 (57%), Gaps = 101/939 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M  +  ++NK Y 
Sbjct: 2   SESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR  +++GQGNFGS+D DPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+L+NG  GIAVGMATN+  
Sbjct: 122 VRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  +NP I  + LM  I GPDFPTG +I GR GI +AY TG+G + +RG
Sbjct: 182 HNLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIYGRAGILDAYRTGKGRLHVRG 241

Query: 253 VSHIEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
              IE  S      DRE+IV TE+PYQ NKA ++E+IAELVR+K+I  I+++RDESD+ G
Sbjct: 242 RYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDKDG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+E
Sbjct: 302 MRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKAR R H+L GL +A+AN+DE++  I+ S N   AR  L+   W +  +
Sbjct: 362 VVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGSGSV 421

Query: 428 KDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             ++      S                   +  +  LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   L  EI     IL    +L+ II  E++ ++D     RRT I++  +D   ED 
Sbjct: 482 LTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+  Y AQ+RGGKG+S   M+++D +  L + STH +VL F
Sbjct: 542 IPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLVVTSTHATVLCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------- 638
           +  G V+  + + +PI S  ARG+ L+N++ L+  E +TTI+P P+              
Sbjct: 602 TDTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTTILPIPKIVEELSVKGETSST 661

Query: 639 ------------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
                       D +     +V FAT +G V+R +L  F  I  +G IA+ L+  D+++S
Sbjct: 662 DALVDSDNDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVS 721

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                   +++L    G+ +RF  +  R   GR + GVRG+ L   + + S+ ++     
Sbjct: 722 ARITNGSQEVMLFASSGKAIRFNENDARAM-GRTAKGVRGMRLTADEFIKSLVVIEDDVR 780

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +                                                    IL   E 
Sbjct: 781 E----------------------------------------------------ILIACEN 788

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           GFGKRT   +F   NR G G+ A   S  N  G LV    V   D IIL+SDKGTL+R P
Sbjct: 789 GFGKRTFIDEFNTQNRGGGGVIAIKTSARN--GELVRATKVEPEDDIILISDKGTLVRTP 846

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           V  +  + R T+GV +   +KDE++V++ R+   E  +E
Sbjct: 847 VQHVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGDNE 885



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 14/258 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                  V   +  G VKRV L  +   R  G     V + + D +    I +    V+ 
Sbjct: 676 TQAEPPFVFFATANGTVKRVELKQFANIRSNG--LIAVGLEEGDKLVSARITNGSQEVML 733

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+S G   +            A+G   +  + L   E I +++   +D        ++ A
Sbjct: 734 FASSGKAIRFNENDARAMGRTAKG---VRGMRLTADEFIKSLVVIEDDVRE-----ILIA 785

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRF 708
            ++G  +R  + +F   NR G   + +       E++       E+DI+L +  G  VR 
Sbjct: 786 CENGFGKRTFIDEFNTQNRGGGGVIAIKTSARNGELVRATKVEPEDDIILISDKGTLVRT 845

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +   +GRN+ GV  I L+K +++++MA V H + D +      +  + + +     
Sbjct: 846 PVQHVAS-SGRNTQGVTLIRLSKDEKLVAMARVEHEEGDNELIDAMKEDGTFEVKGQEQM 904

Query: 769 TEEITSLKNDSSVEGNIS 786
             +  +     +     S
Sbjct: 905 DVDAANSDATETYFDEAS 922


>gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
 gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310]
          Length = 857

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/896 (41%), Positives = 542/896 (60%), Gaps = 85/896 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +    +K Y KCAR+
Sbjct: 2   KINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARV 61

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEV+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  AA RYTECRL K
Sbjct: 62  VGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSK 121

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               ++DDL KDTVD   N+D + QEP V+  R PN+LVNGG GIAVGMATN+PTHNL E
Sbjct: 122 MGEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLRE 181

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V++GC A IDNP+I+LD LM+ I+ PDFPTGA I G  G+K+AY TGRG I+IR  + IE
Sbjct: 182 VIEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIYGLQGVKDAYETGRGRIIIRAKAEIE 241

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 ++IVVTEIPY VNK  ++E IA LV+E ++  I+++ DES RQG R+VI++KR 
Sbjct: 242 SDES-HDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIKRD 300

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+A+VILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +RRTK+ L
Sbjct: 301 ANANVILNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIRRTKFEL 360

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R                 
Sbjct: 361 KKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKR----------------- 403

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L  +Q++AI+++RL++LTGL  D +  E + L   I    +ILS     
Sbjct: 404 ---------FDLDNLQSKAIVDMRLSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELC 454

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
             ++K EL  VK++    RRT+I+    +   ED    + +V+TVSHLGY+KR PLS +R
Sbjct: 455 KKVMKDELNEVKEKYGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFR 514

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +P G+  ++G+A
Sbjct: 515 EQARGGVGSKGATHRDQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRA 574

Query: 618 LINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + N+L+++  + I  I+      DE   N+ YVVFATK+G V++  L  + +   +G IA
Sbjct: 575 IQNLLNIDSDDAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIA 634

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ- 734
           + +   DE++ V     EN++++  + G+ VRF  + +R   GR + GVRG+ L  GD  
Sbjct: 635 INIAEGDEVVDVRLTNGENELIMANRNGRAVRFDENTVRTM-GRTATGVRGMRLDDGDDA 693

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M +V                                                     
Sbjct: 694 VVGMIVVNDPV------------------------------------------------- 704

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              + ++ VSE G+GKR+   D+R +NR GKG++   ++  ++ G LVA+  V D++ ++
Sbjct: 705 --NETVMVVSENGYGKRSLVEDYRKTNRGGKGVKTLSIT--DKTGRLVAIKNVTDDNDLM 760

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAEST 909
           +++  G  IR+ V+E R+  RAT+GV + +   K++ + SV +   SE+    E  
Sbjct: 761 IINKSGITIRLAVSECRVMGRATQGVRLINLSKKNDVIASVCKTMSSELEASLEED 816


>gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 842

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/882 (41%), Positives = 529/882 (59%), Gaps = 47/882 (5%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRLQ   +  LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG VA+I NP+I 
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR----EQIVV 268
              LM+ + GPDFPTGA ILG + IK AY TGRGSI +RG++ IE          E I++
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAIII 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+VIELKR +   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+A+LD ++ +IR +P+  TA+ EL+                           +  
Sbjct: 361 GLLIALAHLDSIINLIRSAPDAPTAKGELI--------------------------NSYG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSEVQ  AIL+++L RLT L  D IR E   L ++I +  DIL  R R+L II+ E   +
Sbjct: 395 LSEVQADAILQIQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K +  TPRRT I     +++D D I  E +++ ++  GY+KR+P+S + AQ R  +G++G
Sbjct: 455 KTQFATPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAG 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++D+D +        H SVLFFS  G VY  K +++P GS  +RG  ++ +L + + E
Sbjct: 515 AKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+I+   E     +  Y+V  TK GN+++  L  F  I  +G IA+ L+  D++  V 
Sbjct: 575 KITSIVSVSEFS---SEEYLVMLTKGGNIKKTALEAFSHIRANGLIAISLEEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPIS--AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               E+ +++ ++ G  + F      +R   GR + GV+ + L  GD++I M I+  A  
Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPL-GRATRGVKSMKLKTGDELIGMDILPAAIL 690

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +       M+    +   +S + EE ++++  +    NI             ++L ++  
Sbjct: 691 NTLNTDTEMEEEPTEVEELSDNIEETSNIEIATGEPANIL----------GPWVLIITIG 740

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKR     FR+ NR+G+G+ AT          L  +  VN +++I++ +++G +IR  
Sbjct: 741 GYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQS 800

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +N I I SR   GV +    +D+ +  V  +       E   
Sbjct: 801 INAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAGDGEESE 842


>gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
 gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23]
          Length = 805

 Score =  848 bits (2191), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/887 (42%), Positives = 527/887 (59%), Gaps = 86/887 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V IT+E++ S++ YA++VI+ RA+PD+RDGLKPV RRILF   Q GV   +K+VK 
Sbjct: 3   QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMGKYHPHG+AAIYDALAR+AQ W+LR  L++GQGNFGS+DGDPPAA+RYTE R
Sbjct: 63  AKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      +L D+ K+TVDFRPNYDGS +EP VL A  PN+LVNG  GIAVGMAT++P HN
Sbjct: 123 LSPIGAEMLQDMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  VA+IDNP I L+ +M  + GPDFPTG  +  R GIK AYATGRGS+ +R   
Sbjct: 183 LSEVVDALVAMIDNPGITLEEVMAHLPGPDFPTGGRLS-RKGIKEAYATGRGSLKVRAKV 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+  G R  +VVTEIPYQVNKA ++ +IA LV+ K+I DI  LRDESDRQG R+ IEL
Sbjct: 242 RVEE-KGSRPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRGA+  V+LNQLY++T+LQS F+VN++A+   +P   +L+ +++ ++  R+EVV RR+ 
Sbjct: 301 KRGANPQVVLNQLYKHTALQSSFTVNLLAIVEGEPRVLSLLDLMRHYLDHRKEVVRRRSL 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA +RAH+L GL IA+ ++DEV+ +IR S +   ARR LM+R              
Sbjct: 361 FDLRKAEERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMER-------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RL  L R+ +  E   L  EI     IL   
Sbjct: 407 ------------FGLSEAQAQAILDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            RL G +K+ELL VK++    RRT + E       ED I  E MV+T++  G++KR+PL 
Sbjct: 455 GRLWGEVKRELLRVKEKYGDARRTLLTEFEESFNPEDLIEDEPMVITLTAQGFLKRLPLE 514

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YRAQ RGGKG      ++ED  T +F+   H  +L FS+ G VY+ KV+ LP    QAR
Sbjct: 515 AYRAQGRGGKGLMAGKTKEEDEATHVFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQAR 574

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  +  +L L + E +  ++     E      Y+VFAT+ G V+R  L ++  +   G I
Sbjct: 575 GVHVKTLLPLAEEEEVAALLAVRGLE---GEGYLVFATERGLVKRTALKEYANLGTGGLI 631

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GD 733
           A++L   D ++ V     E++ +L T  GQ +RFP+  +R   GR++ GV GI   K  D
Sbjct: 632 AIRLLEGDRLVGVALSDPEDEAILATAEGQAIRFPLEEVRA-TGRDTQGVVGIRFKKPQD 690

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+S+  V   +                                                
Sbjct: 691 RVVSLVTVKPGEMVD--------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L+VS +G+GKRT   ++ +  R G G+    VS    +G L A+  V   + +
Sbjct: 706 ------LLSVSTRGYGKRTPLSEYPLQGRGGMGVITYAVSAR--VGRLAALLKVRGTEDL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++S KG  +R PV EIR  SRAT GV I +  +++ + S   + E 
Sbjct: 758 LVLSKKGLTLRTPVAEIRQYSRATAGVKIMNLPEEDEIASAFVVEEE 804



 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 97/240 (40%), Gaps = 27/240 (11%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++++   +++       + G   RF +S  +      +  +  + L    ++
Sbjct: 378 IALDHIDEVIALIRASED---APAARRGLMERFGLSEAQ------AQAILDMRL---QRL 425

Query: 736 ISMA---------IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +++           ++   A     +     +  + +      +E       + +     
Sbjct: 426 VALEREKLLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDARRTLLTEFEE 485

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               ++L   E  ++T++ +GF KR     +R   R GKG+ A    + +E   +   F 
Sbjct: 486 SFNPEDLIEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGKTKEEDEATHV---FV 542

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIV 903
            + +D +++ S++G + R+ V ++    R  +GV    +   A++E V ++  +R  E  
Sbjct: 543 ADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEVAALLAVRGLEGE 602


>gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
 gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium
           saburreum DSM 3986]
          Length = 824

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/907 (40%), Positives = 552/907 (60%), Gaps = 92/907 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +         + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   EPNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS+R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKIAMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HN+ EV+D  V +IDN     D  +D ++ II+GPDFPTGA ILG  GIK AY TG
Sbjct: 182 NIPPHNIKEVIDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLRGIKEAYTTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R V+ IE  S  + +IVV+E+PY VNKA ++EKIAELV++KRI  I DLRDES+
Sbjct: 242 RGKIKVRAVTEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESN 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G RVVIEL++  +A++ILN+LY++T LQ  F VNM+AL   +P+   ++ +L+ ++A 
Sbjct: 302 REGMRVVIELRKDVNANIILNRLYKHTQLQDTFGVNMLALVDNQPKVLNILQMLQYYLAH 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+VV RRTKY LNKA++RAH+L GL IA+ N+DE+++IIR S N   A+ EL++R    
Sbjct: 362 QEDVVTRRTKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR---- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+VQ +AI+++RL  LTGL R+ + +E N L  +I
Sbjct: 418 ----------------------FGLSDVQAQAIVDMRLRALTGLERERLESEYNELLAKI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +    IL+   +LL +IK+E+L V+D+    RRT  ++     ++ D I +ED+++ ++ 
Sbjct: 456 EYFEGILADEKKLLTLIKEEILVVEDKYKDDRRTGFMQDDDMEDE-DLIQKEDIIIAMTK 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           LGY+KR+    +  Q RGGKG  G+   D+DF+ D+ + +TH  + FF++ G VY  K +
Sbjct: 515 LGYIKRMSPDNFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P  S  ARG A++N+L L   E+I+ I+P    E+  N+ Y+   TK+G +++ +++ 
Sbjct: 575 KIPEASRTARGIAIVNLLQLQPDEKISAIIP---SEAKSNDGYLFMVTKNGTIKKCQINL 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I ++G  A+ L   DE++ V+    ++D+++ +K G C+R     IR   GR + GV
Sbjct: 632 FDNIRKNGLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAV-GRGATGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L  GD+VI M +    +                                       
Sbjct: 691 RGMRLNTGDEVIGMQLASQGE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                         ++L VSE G+GKRT   +F++ NR GKGI     ++  + G LV  
Sbjct: 712 --------------YLLLVSEYGYGKRTKISEFKVQNRGGKGIICYKDNE--KTGKLVGA 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902
             VN++ +I+L++ +G +IR+ V+ I I  R   GV + +     D ++ S+ +IRE + 
Sbjct: 756 KLVNEDREILLITTEGIIIRIEVSGISILGRTASGVKLMNVDRESDTKIASIAKIREEKN 815

Query: 903 VDEAEST 909
            +  E +
Sbjct: 816 TESDEES 822


>gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1]
          Length = 813

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/892 (38%), Positives = 521/892 (58%), Gaps = 83/892 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M  +   +N+ Y K AR+ 
Sbjct: 5   IQIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQD+S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TVDFRPNYD S +EP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 AGEFLADIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG + ++D P   +  ++ +++GPDFPTGA I G  G+  AY TGRG+I IRG + +E+
Sbjct: 185 CDGLLHLLDTPSCPVTDIIGLVKGPDFPTGAAIYGGKGLTEAYTTGRGTIKIRGRAEVEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D   +V+ EIPY +NK++++EKIA L+ + RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 245 RKKDYVSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLKKGV 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L++ F +NM+ +   +P    +  +L+ F+  R +V++RRT++ L 
Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIKQVLEHFLTHRRDVILRRTRFDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMER------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL +   L 
Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENDEVLR 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  ++D   TPR+T I+E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 459 GVIRDEIKEIQDRYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQ 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 519 QKRGGKGIAGVATAGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +   E        Y +F T+ G V+R     +     +G IA+ L
Sbjct: 579 ANLLPMDKEEFVATALSIREFS---EERYFLFVTRKGMVKRTCTDLYKNCRSTGIIAVGL 635

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+    E ++LL T+ G   RF IS +R   GR + GV+GI+L   D+V + 
Sbjct: 636 KENDELLTVKEIDDETEVLLATQQGLSNRFHISGVRP-TGRGAAGVKGIALKGNDRVAAG 694

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++                                                         
Sbjct: 695 VVITSVSRSE-------------------------------------------------- 704

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LTVS  G+GKRTS   + I NR G G+    V+   + G ++    V D+D+++L++ 
Sbjct: 705 -VLTVSANGYGKRTSIEHYPIRNRGGSGVINMRVTP--KTGQVIGAVMVGDDDELLLLTS 761

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              +IR+ V+ I    RAT+GV++    +++ V+  + +  S++   A S E
Sbjct: 762 ANKIIRLSVSGISSVGRATQGVMLVRMDENDTVMGFDLVDPSDLDRCAPSGE 813


>gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 840

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/902 (39%), Positives = 539/902 (59%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDARIRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NP      LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL+A++  + EV+
Sbjct: 303 ISIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKAILEAYLTHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 ---------------DGYALSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVELIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+ + R+  +I  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T++  GY+
Sbjct: 457 ILAHQERVDQLIYDELLEIQTKFGDERRTELQVGDVTTLEDEDLIEEEDVIITLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++    + +  ++ Y+ F T+ G V+R  +S+F  I
Sbjct: 577 YGRQAKGIPVVNLLHFEGDEKIQTVINVRGEATDSHD-YLFFVTRLGVVKRTAVSEFANI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       +L+ TK G  VRF  + +R+  GR + GVRGI 
Sbjct: 636 RTNGLKALTLHDDDEVLSVQITDGTQSVLIATKDGYSVRFVEADVRIM-GRAAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI                                                    
Sbjct: 695 LRENDLVIGA-------------------------------------------------- 704

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              ++    + +L ++EKG+GK+T + ++ I  R GKGI+  +++  N  G L  +  V 
Sbjct: 705 ---DVVDDTENVLVITEKGYGKQTPATEYPIKGRGGKGIKTANITDKN--GVLAGMTIVR 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I++ + +G +IR  V  +    RAT GV +       +V ++ ++      D +  
Sbjct: 760 GDEDIMVTTTQGVMIRFAVASVSQTGRATLGVRLIRLEDGAKVATLAKVEHETTEDVSRE 819

Query: 909 TE 910
           TE
Sbjct: 820 TE 821


>gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
 gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23]
          Length = 834

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/898 (39%), Positives = 541/898 (60%), Gaps = 90/898 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +         IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MAEQDMP------NRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV
Sbjct: 55  NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K A  +L D+ K+TVDF  NYDG+ +EP VL AR+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++G   +++NPDI  + LM+ I GPDFPTG V++G++GI+ A
Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+I++R    IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ 
Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ 
Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM  
Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELM-- 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R+ I +E   L
Sbjct: 413 ------------------------NNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539
              I +  DIL+ R R+  II  EL+ ++      RRT +    + ++EDED I  ED++
Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++H GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY
Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P     A+G  +IN+L +N  E+I+ ++    + +  ++ Y+ F TK G V+R
Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETND-DDKYLFFTTKLGTVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +++F  I  +G  A+ L   DE++ VE  +++  +++ T  G  + F  S +R   GR
Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRGI L   D VI  A +                                      
Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLN------------------------------------- 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +L +SE GFGK+TS+ ++ I  R G G++  +V+  N  G
Sbjct: 710 ----------------SDSKVLVISENGFGKQTSASEYPIKGRGGLGVKTVNVTAKN--G 751

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV +  VN ++ I+LV+D+G +IR  +  +    R+  GV +       RV ++ ++
Sbjct: 752 PLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKIDNGARVATIAKV 809


>gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
 gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B]
          Length = 834

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/917 (38%), Positives = 510/917 (55%), Gaps = 94/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+        E   I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTQDTTLP--PEGGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVKCAR+ G+V+G YHPHG+AA+YD L R+AQ W +R  L++GQGNFGS 
Sbjct: 59  YDGGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  +L D+GK+TVDF PNYDG   EPV+L AR+PN+LVNG  
Sbjct: 119 GNDPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +++PD   + L+    E I+GPDFPTG VI+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIVGHAG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSIV+R V  +E+ +  R+ +VVT++PYQVN   +  +IAELV E RI  I
Sbjct: 239 IEEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGI 298

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RD+S  R G R+VI LKR A   V+L  LY++T LQ  F  NMVAL    P   +L 
Sbjct: 299 ADIRDDSSSRTGQRLVISLKRDAVPKVVLANLYKHTQLQDTFGANMVALVDNVPRTLSLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +VA + +V+VRRT+Y L +A  RAH+L GL  A+  LD V+ +IR S + + AR 
Sbjct: 359 AFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEARS 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + EVQ  AIL+++L +L  L R  I +
Sbjct: 419 GLME--------------------------LLDVDEVQATAILDMQLRKLAALERQAIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L     EI +  DIL++ SR   I+ +EL  + D+    RRT IV    D+  ED I  
Sbjct: 453 DLAKHEAEIADLNDILANESRQRAIVSEELKEIVDKYGDERRTAIVPADGDVSIEDLIAE 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR   S+YR+QRRGGKG  G  +R +D V   F+ +TH  +LFF+  
Sbjct: 513 EDVVVTITRGGYAKRTKTSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  +  ARG+ + N+L+    E+I  ++   + +      Y+V AT+ G
Sbjct: 573 GRVYRLKAYEIPEAARSARGQHVANLLAFQPDEKIAQVLALRDYD---AAPYLVLATRSG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++  L +F      G IA+ L   D ++     + ++++LL ++  Q +RF      +
Sbjct: 630 LVKKTALREFDSNRTGGIIAINLRDDDVVIGARLVSPDDELLLVSRKAQAIRFRADDEAL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+     D +++M +V                                
Sbjct: 690 RPM-GRATSGVIGMRFHDDDALLAMMVVRP------------------------------ 718

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++   + KG+ KRT   ++ +  R G G+    ++
Sbjct: 719 -----------------------QAYVFVATTKGYAKRTPIEEYPLQGRGGYGVITAKIT 755

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              E G LV    V++ D+++ ++  G +IR  V+E+R  SRAT GV +   A+++ +V+
Sbjct: 756 A--ERGDLVGALMVDEEDEVLAITVLGGVIRTRVSEVRPTSRATMGVRLMDLAENDALVA 813

Query: 894 VERIRESEIVDEAESTE 910
           + R  E          E
Sbjct: 814 ITRNAERGGDAGIGEEE 830


>gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC
           51172]
          Length = 815

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/897 (40%), Positives = 557/897 (62%), Gaps = 86/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I ++ +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM Q+G++ NK  
Sbjct: 3   ENQNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+GKDTVDF PN+DG   EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + NP+I +D L++ I GPDFPTGA+ILG+TGIK AY TGRG I  R
Sbjct: 183 PHNLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALILGKTGIKEAYTTGRGKIKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V  IE    +RE+I+++EIPYQVNKA ++EKIA+LV+EKRI  I+D+RDESDR+G R+V
Sbjct: 243 AVCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KR ++A+++LN LY+YT L++ F +  +AL G +P+   L  +++ +V  ++EVV R
Sbjct: 303 VEIKRDSNANIVLNNLYKYTQLENTFGIINLALVGGEPKILNLKELIEYYVDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L++AR+R H++ GL IA+ ++DE+++IIR S + +  ++    R           
Sbjct: 363 RTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS+ Q++AIL+++L RL+GL  + +  E   L   I+  L IL
Sbjct: 412 ---------------YKLSDAQSQAILDMQLKRLSGLEIEKLNAENKELADTIEYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +K++    RRT+IV    +++  + I  ED+++ ++  GY+KR+
Sbjct: 457 NSEENLINLIIDEITEIKEKYSDERRTKIVPDEGEIDITELIEEEDILINLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+SLG VY  + +++P GS 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG+A+INIL+L  GE+IT +M   E      N  +V  T+ G +++    +F  I R+
Sbjct: 577 TSRGQAIINILNLETGEKITEMMTLSELS---KNSQLVLQTQQGQIKKTDAENFTNIRRN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    ++ +++++T+ G  ++F    +R   GR++VGVR I L K
Sbjct: 634 GIIAISLKDWDKLISVRQIDKDEELIISTQNGMTIQFNTKDVRSM-GRSAVGVRAIRLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SM I                                                   
Sbjct: 693 DDAVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K +E ++L V+E GFGK+TS  +F+  NR GKG+R   VS+  + G +V   PV+ + 
Sbjct: 702 --KGEETYLLVVTENGFGKKTSFSNFKNQNRGGKGVRCHKVSE--KTGKVVDTLPVDLDT 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEAE 907
            I++VS KG +IR+   ++    R T GV + +  ++++ +VSV         +E +
Sbjct: 758 DIMMVSLKGDMIRLSARDVSTTGRNTMGVKLKNLASEEDAIVSVTTYDNMLEDEEKD 814


>gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
 gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27]
          Length = 803

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 535/885 (60%), Gaps = 84/885 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K ARI G+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++YDA  R+AQD++ R LL++G GNFGS+DGD  AA RYTE R+ K    +L 
Sbjct: 61  YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGMATNIP HNL EV +G   
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R  + IE+ S  + 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQG R+VIEL+     D++L
Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+LY++T LQ  F V M+AL    P    L  +L  ++  R +V+VRRT++ LNKA  RA
Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+  IR S   E AR  LMQ+                        
Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q  AIL++RL RLTGL R+ I  E   L   I++   IL+S +R   IIK E
Sbjct: 397 --FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  +K +   PRR+ I     D++ ED I  E+MV+T++  GY+KR+  +VYR Q +GG 
Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILS 623
           G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +P  GS  +RG A++N+L 
Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  GE +TT++   + E    ++ +   T+ G V+R  + ++  I RSG  A+ LD  D 
Sbjct: 575 LAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV   T   DIL+ TKLG  +RF    +R+   R + GVRGI L  GD V+   ++  
Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVLNT 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +                                                   E  + T+
Sbjct: 691 DE--------------------------------------------------SEAQVFTI 700

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV  V+++D+++L+S++G +I
Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758

Query: 864 RVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  +N+I +   +A  GV   +  + ++V S+  I  +EI +E E
Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803


>gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a]
          Length = 880

 Score =  848 bits (2190), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/887 (39%), Positives = 526/887 (59%), Gaps = 84/887 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE K      I+ EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K 
Sbjct: 3   EEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G GNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ K+TVDF PNYDG  +EP VL +R+PN+LVNG  GIAVGM TNI
Sbjct: 123 TEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTTNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+     ++ NP      LME + GPDFPT  +++G+ GIK AY TG+G I++
Sbjct: 183 PPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVIGKAGIKKAYETGKGRIIV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+  +  +E+I+V+EIPY VNKA ++E+IA+L R+KRI  I  +RDE+ RQG R+
Sbjct: 243 RARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE ++ ASA VILN L++ T +Q+ F+ NMVA++   P+  +L  IL+ ++  +EE++ 
Sbjct: 303 VIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQGVPKTLSLKQILRRYLDHQEEIIR 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   KA  RAH+L GL IA+ ++DE+V I+R S   + A+   M +          
Sbjct: 363 RRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQ---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q +AIL++RL RLTGL R+ I NE   L  EI    ++
Sbjct: 413 ----------------YGLSDKQAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEV 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549
           L+S  +   II QELL ++      RRT I  G +   EDED I   ++++T+S  GY+K
Sbjct: 457 LASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV  S YR Q RGG+G  G+ ++D D +  +   STH  +L F+  G V++ K + +P  
Sbjct: 517 RVEDSEYRTQNRGGRGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEY 576

Query: 610 SPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              A+G  ++N+L+L + E++  ++   P D+ + +  Y  F TK G V+R  + ++  I
Sbjct: 577 GRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNI 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE+++V   + E++I+L +  G  V F    +R   GR + GVRGI 
Sbjct: 637 RNNGLIAINLRDDDELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSM-GRTATGVRGIR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+  +I+                                               
Sbjct: 696 LDQDDYVVGASILGP--------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +Q +L V+EKG+GKRT + ++ I +R GKG++  ++++ N  G LV +  V+
Sbjct: 711 --------DQDVLIVTEKGYGKRTPADEYSIKHRGGKGVKTVNITEKN--GPLVGLATVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ I+L++D+G +IR    +I    RAT+GV +    +   V ++ 
Sbjct: 761 LDEDIMLMTDEGVVIRFHSVDISQTGRATQGVRLMRLDEAAHVSTMA 807



 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +      K      + +    +     +      G I+    ++L  +   ++T+S KG
Sbjct: 454 NEVLASEEKRYEIIYQELLEIEKRFGDERRTEIRVGEITNLEDEDLIEESNVLITLSRKG 513

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + KR    ++R  NR G+G++   +   + I    A+   + +D I+  +D+G + ++  
Sbjct: 514 YIKRVEDSEYRTQNRGGRGVKGMALQDGDHID---AMLSTSTHDVILCFTDRGRVFQIKG 570

Query: 868 NEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAES 908
            EI    RA KG   V + +  +DE+V  V  +  S+   ++E 
Sbjct: 571 YEIPEYGRAAKGLPIVNLLNLQEDEQVRGVINVTPSDKETDSED 614


>gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4]
 gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4]
          Length = 872

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/891 (38%), Positives = 536/891 (60%), Gaps = 67/891 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V+I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRR+LFGM ++G   +K Y
Sbjct: 3   DQDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY  L RMAQ WS+R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL+K +  +L D+ KDTVDF+ N+D + +EP VL +R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVD  +A IDN DI++  +++ I+ PDFPTG +I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIYGYAGVKEAFETGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE  +  RE+IV+ EIPYQVNK  +++ +  LV +K++  IA + DESDR+G R+V
Sbjct: 243 SKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +++KR A++ V+LN+L++YT+LQS FSVN +AL   +P    +  ++  FV  R EVV+R
Sbjct: 303 VDVKRDANSSVVLNKLFKYTALQSSFSVNNIALVHGRPRMLNVKDLIHYFVEHRHEVVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L +A  RAH+L G  I + NLDE ++IIR S  P+ AR  LM+R           
Sbjct: 363 RTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTG+ +D +R E   +   I    +IL
Sbjct: 412 ---------------FGLSEIQSRAIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                 + IIK ELL VK +    RRT+IV    +   ED    ++M++T+SHLGY+KR 
Sbjct: 457 EKIELRMQIIKDELLEVKAKYGDARRTQIVYSSEEFNPEDFYADDEMIITISHLGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            LS +RAQ RGG G  G   RDEDF+  ++  S H ++LFF+S G  Y  KV+ +P GS 
Sbjct: 517 ALSEFRAQGRGGVGSKGSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSK 576

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  +++   +      D     + Y++FATK+G +++  L  + +  
Sbjct: 577 NSKGRAIQNMLNIDNDDKVNAFIRVKGLNDPEYTKSHYLIFATKNGVIKKTSLEAYSRPR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D+++ V      +++L+  + G+ +RF  S +R   GR + GVRG++L
Sbjct: 637 QNGVNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREM-GRTATGVRGMTL 695

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+++ M  V   D +    +    +          D   +   +N  ++      
Sbjct: 696 DEDGEDELVGMICVNKEDNENIMVVSQQGYGKRTLLDEVDDEGNLMLDENGETIPV---- 751

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                        +R++NR GKG++  +++  ++ G LV +  V
Sbjct: 752 -----------------------------YRVTNRGGKGVKTMNIT--DKTGKLVTIKNV 780

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V + R+  RAT+GV + +  K ++ + SV ++
Sbjct: 781 TDENDLMIINKSGITIRLKVADFRVMGRATQGVRLINLEKRNDEIASVCKV 831



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 99/251 (39%), Gaps = 30/251 (11%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +K+  L  Y   R+ G   + + +R++D V  + +   ++ VL  +  G   +  
Sbjct: 619 TKNGVIKKTSLEAYSRPRQNG--VNAITIREDDQVIQVRLTDGNSEVLMANRNGRAIRFH 676

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++      A G   +  L  +  + +  ++   ++    +N  ++  ++ G  +R  L
Sbjct: 677 ESKVREMGRTATGVRGMT-LDEDGEDELVGMICVNKE----DNENIMVVSQQGYGKRTLL 731

Query: 663 S--------------------DFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTK 701
                                        G   M +  +  ++++++  T END+++  K
Sbjct: 732 DEVDDEGNLMLDENGETIPVYRVTNRGGKGVKTMNITDKTGKLVTIKNVTDENDLMIINK 791

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSA 760
            G  +R  ++  RV  GR + GVR I+L K  D++ S+  VL  + +       +  +  
Sbjct: 792 SGITIRLKVADFRVM-GRATQGVRLINLEKRNDEIASVCKVLSENEEEVVEETEVSAVPV 850

Query: 761 QRRLISGDTEE 771
              ++     +
Sbjct: 851 TDAVVGETETD 861


>gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896]
          Length = 812

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/886 (41%), Positives = 547/886 (61%), Gaps = 86/886 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S EE    I  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q  +  
Sbjct: 2   SQEEMRDKIIEVDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A I G+V+GKYHPHG+ A+YDAL +MAQD+S+R  L++G GNFGS+DGD  AA
Sbjct: 62  DKPYRKSATIVGDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R++K +  +L DL K+TVD  PNYD +  EP VL ARYPN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMEKLSMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T+IP HNLGEV+D  V +IDN D  L+ +++ I+GPDFPTGA I+G + +  AY TGRG 
Sbjct: 182 TSIPPHNLGEVIDAVVELIDNEDATLEDILKHIKGPDFPTGAHIMGNSSMLQAYRTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +V R  +  E+ SG + +IVVTEIPYQVNKA ++EKIAEL+++KRI  I  + DES+R+G
Sbjct: 242 VVQRAKTSFEEMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIEL+R  + D++LNQL++++ LQ +FS+ M+AL    P+  TL  +L+ ++  +EE
Sbjct: 302 MRIVIELRRDVNPDIVLNQLFKFSPLQQVFSIIMLALVNNIPKVLTLEQMLRLYLKHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA+DR H++ GL  A+ ++DEV+ IIR S +   A   LM+R       
Sbjct: 362 VVTRRTQFDLKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYS--DAMERLMER------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 SE+Q +AIL+++L RL GL ++ + +E   L  +I   
Sbjct: 413 -------------------FDFSEIQAKAILDMQLRRLQGLEKEKLEDEQKDLQQKIDYY 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +ILS RS LL IIK+E+L +K +    RRT  +    D++ +D I  +++ VT++HLGY
Sbjct: 454 QEILSDRSLLLSIIKEEILEIKAKYGNERRTTFLASYEDIDIKDMIPDDEVTVTLTHLGY 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV +  Y+ Q+RGGKG + +  RDEDFV  L + S H+ V+FF+++G +Y+   + +P
Sbjct: 514 IKRVGIDTYKTQKRGGKGIASMSTRDEDFVDKLLLTSNHSKVIFFTNMGRIYRLNTYEIP 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G  ++NIL L  GE++ T++   E+++  ++ +VV  T+ G +++  L +F +
Sbjct: 574 ESSRTAKGTNIVNILPLEDGEKVNTMLSIREEQA--SSGFVVMCTRKGIMKKTPLEEFQR 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            NR+G IA+ L   DE++ VE      +I+   + G+ + F  S IR   GR + GVR +
Sbjct: 632 SNRNGLIAISLKEDDELIGVELTDGNCNIICVARNGKAIMFDESDIRSM-GRTAQGVRAM 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD+++SM I                                               
Sbjct: 691 NLEEGDEIVSMMI----------------------------------------------- 703

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    E+ +L +SE+G+GKRT   ++ +  R GKG R   +++  + G LV    V
Sbjct: 704 ------ADPEKDVLIISERGYGKRTPIAEYNLQTRGGKGSRTYKITE--KTGRLVGGKVV 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +++D+I++V+  GTLIR+ V  I + SR T GV +  TA+++ + S
Sbjct: 756 SNDDEIMIVNIDGTLIRMEVKGISVLSRVTSGVRLMKTAENQDIAS 801


>gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
 gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN]
          Length = 867

 Score =  847 bits (2189), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/896 (39%), Positives = 548/896 (61%), Gaps = 86/896 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   ENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD PA
Sbjct: 63  SNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ K+TVD   N+D + +EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+PTHNL EV+DGC A IDNP+I ++ LM+ I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            I++R  + IE      ++IVVTEIPY VNKA ++E IA+LV+E ++  I+++ DE+ RQ
Sbjct: 243 RIIMRAKAEIESDDT-HDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A++ILN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANIILNKLFKMTALQSSFSVNCIALVKGRPRLLSLQECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT++ L KA++RAH+L GL IA  N+DEVVRIIR S  P  A+  L +R      
Sbjct: 362 DVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q++AI+++RL++LTGL  +++  E + +   IK+
Sbjct: 416 --------------------FDLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKD 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL++  R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILNNPERCKEVMKEELQEVKEKYGDVRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  +  K + +
Sbjct: 516 YIKRTPLADFKEQARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   A+G+A+ N+L+L+  + +   +      DE   ++ YVVFATK G V++  L  
Sbjct: 576 PEGDKTAKGRAIQNMLALDPDDSVNAFLRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRH 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V      N++++  + G+  RF   A+R   GR S GV
Sbjct: 636 YSRPRTNGVIAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L     D VI M +V   +                                     
Sbjct: 695 RGMRLDDDGEDGVIGMIVVNDTEK------------------------------------ 718

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LV
Sbjct: 719 ---------------ETVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITE--KTGKLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERI 897
           A+  V D + +++++  G +IR+ V E R+  RAT+GV + +   K++ + SV ++
Sbjct: 762 AIKNVTDENDLMIINQSGIVIRLAVAECRVMGRATQGVRLINLAKKNDVIASVCKV 817


>gi|256830857|ref|YP_003159585.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
 gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028]
          Length = 848

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/887 (40%), Positives = 534/887 (60%), Gaps = 84/887 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI  E+Q SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++G  +N+ Y K AR+
Sbjct: 3   NISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSARV 62

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GK+HPHG++A+YDAL RMAQ++++R  L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 63  VGDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSK 122

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L D+ KDTV+FRPNYD S QEP VL  + PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 123 LAGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGE 182

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVDG + ++D+P + +D LM+ I+ PDFPTGA+I G+ GI+ AY TGRGS+ IR    IE
Sbjct: 183 VVDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIYGKAGIREAYRTGRGSVRIRSRIEIE 242

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K  GD E IVV EIPY +NK+ ++EKIA LV E++I  I+DLRDESD +G R+V++LK+G
Sbjct: 243 KRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLKKG 302

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +DVI+NQL+++TSL++ F +NM+A+   +P+   +  +L+ F+ +R EVV+RR+++ L
Sbjct: 303 VFSDVIVNQLFKFTSLETSFGINMMAVVNNRPQLLNVKQVLEYFLDYRREVVIRRSRFDL 362

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA+ RAH+L GL IA+  +DEVV +IR S  P+ A+  L +R                 
Sbjct: 363 RKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRER----------------- 405

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE+Q +AIL++RL RLT L R+ +  E   L  +I+    ++ +   L
Sbjct: 406 ---------FGLSEIQAQAILDMRLQRLTNLEREKLLEEYAELLKQIEYLTSVIENTEVL 456

Query: 498 LGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
             +I+QEL  ++D   TPR++ I       ++ ED I  E +V+T+S  GY+KR  L  Y
Sbjct: 457 KSVIRQELQDLRDNFATPRKSEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLDNY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R QRRGG G +GV + +EDF+T +   S H  +  FS+ G +Y+ KV ++P G   ARGK
Sbjct: 517 RQQRRGGTGITGVQVAEEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTARGK 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L+  E I   M   + +      +  F TK G V+R+ +  +  I   G IA+
Sbjct: 577 HVANLLPLDSNEYIAAAMTCRDLD---QEKFYFFYTKLGVVKRSSVHLYRNIRAVGLIAL 633

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +   DE++ V      ++++L T  G  +RF  S +R   GR + GV+G++L KGDQV+
Sbjct: 634 GMRDDDELIGVREVETNDEMVLVTVDGYSIRFACSDVRAM-GRTATGVKGLALRKGDQVV 692

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  +V                                                    K  
Sbjct: 693 AGVVVN---------------------------------------------------KDT 701

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q +LT++E G+GKRT    FR  +R GKGI    ++   + G +V    V   D++IL+
Sbjct: 702 QQELLTIAENGYGKRTQVEHFRAQSRGGKGIINMRITP--KTGKVVGAMMVYPTDELILL 759

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    +IR+ +++I +  RAT+GV +     ++ VV  + +      
Sbjct: 760 TSGSKIIRIGISDISLVGRATQGVRLVRLEDEQTVVCFDHVPTDAPE 806



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 71/434 (16%), Positives = 149/434 (34%), Gaps = 34/434 (7%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP---ETARRELMQRSWNASDIKDL 430
           + LL +  +    +  L   + N + +  +IR          A     +   +  D  D+
Sbjct: 430 EKLLEEYAELLKQIEYLTSVIENTEVLKSVIRQELQDLRDNFATPRKSEILAHDPDSIDI 489

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            D+I D    I      YL   +  ++   R  R  G G   ++         I    + 
Sbjct: 490 EDIIPDEPVVITLSRNGYL---KRTSLDNYRQQRRGGTGITGVQVAEEDFITFILTTSN- 545

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------REDM 538
                 L     +       ++    RT   + + ++   D               +E  
Sbjct: 546 -HQYMNLFSNKGKMYQVKVHQIPEGGRTARGKHVANLLPLDSNEYIAAAMTCRDLDQEKF 604

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
               + LG VKR  + +YR  R  G    G+  RD+D +  +  V T+  ++  +  G+ 
Sbjct: 605 YFFYTKLGVVKRSSVHLYRNIRAVGLIALGM--RDDDELIGVREVETNDEMVLVTVDGYS 662

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +     +      A G   +  L+L +G+++   +   +D        ++   ++G  +
Sbjct: 663 IRFACSDVRAMGRTATG---VKGLALRKGDQVVAGVVVNKDTQQE----LLTIAENGYGK 715

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R ++  F   +R GK  + +       +++        ++++L T   + +R  IS I  
Sbjct: 716 RTQVEHFRAQSRGGKGIINMRITPKTGKVVGAMMVYPTDELILLTSGSKIIRIGISDI-S 774

Query: 716 FAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             GR + GVR + L     V+    +   A          +    +      G  +    
Sbjct: 775 LVGRATQGVRLVRLEDEQTVVCFDHVPTDAPEVSGVPRAEVPSPDSDPEDSVGPDDVDLP 834

Query: 775 LKNDSSVEGNISEE 788
             ++   E + S+E
Sbjct: 835 DDDEMLDETDESQE 848


>gi|254431397|ref|ZP_05045100.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
 gi|197625850|gb|EDY38409.1| DNA gyrase, A subunit [Cyanobium sp. PCC 7001]
          Length = 883

 Score =  847 bits (2188), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/916 (39%), Positives = 542/916 (59%), Gaps = 58/916 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    +D   +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MAD---PTDPNGDSRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+++RL L++G GNFGSV
Sbjct: 58  YELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFNMRLPLVDGHGNFGSV 117

Query: 121 DGDPPAAERYTECRLQKA-AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           DGDPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP V+ AR P +L+NG 
Sbjct: 118 DGDPPAAMRYTESRLQALTTDALLEDIEAETVDFADNFDGSQQEPTVMPARIPQLLLNGS 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL E++DG +A+I +PD++   LM II GPDFPTG  ILGR GI+ 
Sbjct: 178 TGIAVGMATNIPPHNLTELIDGLLALIADPDVEDRQLMAIIPGPDFPTGGQILGRRGIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y TGRGS+ +RGV+ +E        DR+ I++TE+P+Q NKA+++E+IAELV +K++  
Sbjct: 238 TYTTGRGSVTMRGVASVETIEAKGRPDRDAIIITELPFQTNKASLIERIAELVNDKKLDG 297

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDESDR G R+VIEL+R A   V+LN L++ T LQ+ FS  M+AL   +P   TL 
Sbjct: 298 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQNNFSAYMLALVKGEPVLLTLR 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR E + RRT++LL KA +R H+L+GL IA+ +LD ++ +IR + +  +AR 
Sbjct: 358 KMLEVFLEFRVETIERRTRFLLRKAEERDHILLGLLIALDSLDAIIALIRAAADTASARS 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           EL+ +                            L+E+Q  AIL+++L RLT L  D IR 
Sbjct: 418 ELVAQ--------------------------FGLTEIQADAILQMQLRRLTALEADKIRL 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL+ R R+ GII  EL ++++   +PRRT I++    +ED D I  
Sbjct: 452 EHEDLLAKITDYKDILARRERVFGIITDELGAIRNRYLSPRRTEILDLEGGLEDIDLIAN 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  
Sbjct: 512 ERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDNLLLFSDR 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY    +R+PI S  A+G  ++ +L + + E+IT+++             +V  T  G
Sbjct: 572 GVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQITSLLAVSAFS---EEAMLVMLTSGG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            ++R +LS F  I  +G IA+ L+  D++  V      + +L+ +  G  + F ++   +
Sbjct: 629 YIKRTRLSAFSNIRSNGLIAISLEDGDDLRWVRLALPGDSVLIGSLKGMTIHFRLTDEEL 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVR ++L  GDQ++SM ++    AD              R   S D+  + 
Sbjct: 689 RPL-GRTARGVRAMNLRAGDQLVSMDVLSAELAD--------------RVASSSDSAGLE 733

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             + +  V   ++ E       +  ++L  S  G GKR     FR+  R+G G+RA    
Sbjct: 734 ESEPEELVADEVAAEEVAV--SEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKF- 790

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +   LV +  +   ++++LVS++G ++R   + I   SRA  GV +      +R+V 
Sbjct: 791 -RRDGDTLVGLKVLGAGEEVLLVSERGVIVRTEADAIPQQSRAATGVRLQRLDAGDRLVE 849

Query: 894 VERIRESEIVDEAEST 909
           V  +  +   DE ++ 
Sbjct: 850 VVLVPPAASEDELDAA 865



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 104/305 (34%), Gaps = 30/305 (9%)

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
           + L   + +  I  + +  +    ++ +   + G +R    + ++   R+  + ++    
Sbjct: 449 IRLEHEDLLAKITDYKDILARRERVFGIITDELGAIR----NRYLSPRRTEILDLEGGLE 504

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISM 738
           D    ++    E  ++L T+ G   R P+S       R + G  G      + V   IS 
Sbjct: 505 D----IDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEEAVKLFISC 559

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
               +     D  + Y                           E  I+         +E 
Sbjct: 560 NDHDNLLLFSDRGVVYAVPAYRVPICSRAAKGTPIVQLLPIPREEQITSLLAVSAFSEEA 619

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++ ++  G+ KRT    F  SN    G+ A  +    +   L  V      D +++ S 
Sbjct: 620 MLVMLTSGGYIKRTRLSAF--SNIRSNGLIAISL---EDGDDLRWVRLALPGDSVLIGSL 674

Query: 859 KGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-----------DE 905
           KG  I  R+   E+R   R  +GV   +    +++VS++ +                 +E
Sbjct: 675 KGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAELADRVASSSDSAGLEE 734

Query: 906 AESTE 910
           +E  E
Sbjct: 735 SEPEE 739



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 95/272 (34%), Gaps = 36/272 (13%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E M+V ++  GY+KR  LS +   R  G     +   D+     L       SVL  
Sbjct: 615 FSEEAMLVMLTSGGYIKRTRLSAFSNIRSNGLIAISLEDGDDLRWVRL--ALPGDSVLIG 672

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN----------------------------IL 622
           S  G    ++     L      ARG   +N                             L
Sbjct: 673 SLKGMTIHFRLTDEELRPLGRTARGVRAMNLRAGDQLVSMDVLSAELADRVASSSDSAGL 732

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD- 679
             ++ E +       E+ +     +V+ A+  G  +R  +  F    R+G    A+K   
Sbjct: 733 EESEPEELVADEVAAEEVAVSEGPWVLVASAAGLGKRVPVDQFRLQKRAGMGLRAIKFRR 792

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             D ++ ++      ++LL ++ G  VR   +       R + GVR   L  GD+++ + 
Sbjct: 793 DGDTLVGLKVLGAGEEVLLVSERGVIVR-TEADAIPQQSRAATGVRLQRLDAGDRLVEVV 851

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +V  A ++ +        + A     + D  +
Sbjct: 852 LVPPAASEDELDAAVDAELDAAVDAEAQDPAD 883


>gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
 gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112]
 gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC]
          Length = 821

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/906 (39%), Positives = 541/906 (59%), Gaps = 86/906 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY TG+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   ++                                           
Sbjct: 691 RGINLRENDYVVGSGVL------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      K+  +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 708 ----------GKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+    I++++  G +IR    ++    R+T GV +     D +V S+  +      +
Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTIVPTEAEQN 815

Query: 905 EAESTE 910
           + +  E
Sbjct: 816 QTDDDE 821


>gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
 gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri]
 gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A]
 gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           reuteri SD2112]
          Length = 829

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/898 (39%), Positives = 540/898 (60%), Gaps = 90/898 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +         IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MAEQDMP------NRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSV
Sbjct: 55  NELGVTPDKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSV 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ K A  +L D+ K+TVDF  NYDG+ +EP VL AR+PN+LVNG  
Sbjct: 115 DGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGAS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIPTHNLGEV++G   +++NPDI  + LM+ I GPDFPTG V++G++GI+ A
Sbjct: 175 GIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+I++R    IE+    +++I+V EIPY VNKA ++E+IAEL R K I  I D+ 
Sbjct: 235 YETGRGTIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVN 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ 
Sbjct: 295 DETDRDGMRIVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQY 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  +E VV RRT++ L KA++RAH++ GL IA+ ++DE++ IIR S   E A+ ELM  
Sbjct: 355 YLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELM-- 412

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL RLTGL R+ I +E   L
Sbjct: 413 ------------------------NNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKL 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMV 539
              I +  DIL+ R R+  II  EL+ ++      RRT +    + ++EDED I  ED++
Sbjct: 449 MAAIADYKDILAHRERINQIIYDELMEIQKRFGDERRTELQVGDITNIEDEDLIEEEDII 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++H GY+KR+P+  +++Q RGG+G  G+ +  +DF+  L   STH  +LFF++ G VY
Sbjct: 509 VALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLFFTNSGKVY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K + +P     A+G  +IN+L +N  E+I+ ++    + +  ++ Y+ F TK G V+R
Sbjct: 569 SMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETND-DDKYLFFTTKLGTVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +++F  I  +G  A+ L   DE++ VE  +++  +++ T  G  + F  S +R   GR
Sbjct: 628 TAVTEFKNIRSNGLKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSM-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRGI L   D VI  A +                                      
Sbjct: 687 SAAGVRGIRLRDEDYVIGAAPLN------------------------------------- 709

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +L +SE GFGK+T + ++ I  R G G++  +V+  N  G
Sbjct: 710 ----------------SDSKVLVISENGFGKQTPASEYPIKGRGGLGVKTVNVTVKN--G 751

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV +  VN ++ I+LV+D+G +IR  +  +    R+  GV +       RV ++ ++
Sbjct: 752 PLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNGARVATIAKV 809


>gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
 gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067]
          Length = 816

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/897 (39%), Positives = 529/897 (58%), Gaps = 86/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  V I +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+   K
Sbjct: 4   ENTTGKVLPVYIEEEMQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YDA+ R+AQD+S R L+++G GNFGS+DGD PAA R
Sbjct: 64  PYKKSARIVGDVLGKYHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+D+ KDTVDF PNYD S +EP VL ++ P +L+NG  GIAVGMATN
Sbjct: 124 YTEVRMAKIAEAMLEDIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+G V +IDNPD+++  LM  I+GPDFPTGA ILG+ GI +AY TGRG + 
Sbjct: 184 IPPHNLCEVVNGLVMLIDNPDVEIPQLMTAIKGPDFPTGACILGKEGITSAYNTGRGVVK 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
           IR  + I   +  +  IV+TEIPYQVNKA +++ IA L ++  I  I  + D S  + G 
Sbjct: 244 IRAKAEIVPANKGKHHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGM 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           ++V+ELK  A  DV+LN+LY++T+LQS F + M+AL   +P    L  +L+ ++  +++V
Sbjct: 304 KIVVELKSDAVPDVVLNRLYKHTALQSSFGIIMLALVNGQPRVLNLKQVLEYYLEHQKDV 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT+Y L KA+DRAH+L GL IA+ N+D V+  IR S   E AR  LM+         
Sbjct: 364 ITRRTRYELGKAKDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALME--------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q +AIL++RL RLTGL R  I  E   L   I    
Sbjct: 415 -----------------NFKLSQRQAQAILDMRLQRLTGLERKKIDEEYVDLLETIDWLE 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +++ IIK++L  +K      RRT I     +M+ ED I  ED+VVT+SH GY+
Sbjct: 458 SVLADEHKVMNIIKEDLQEMKKRFGDERRTEISIDSSEMDIEDLIAEEDIVVTISHQGYI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR  L  +R+Q+RGG G++G   +  +D    LF+ +TH ++LFF++ G VY++K + +P
Sbjct: 518 KRQTLDNFRSQKRGGVGKTGGSGKKIDDSAEHLFLSTTHHNILFFTNRGRVYRQKGYEIP 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A+G A+IN+L+L  GE+IT ++P  E        Y+  AT  G V++  L D   
Sbjct: 578 EASRTAKGTAIINLLALMPGEKITAVIPVKEFR---EEQYMFMATNKGTVKKINLKDLES 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + ++G IA+ LD  ++++ VE     ++I+L T+ G  +RF    +R   GR + GV+GI
Sbjct: 635 VRKNGMIAINLDDDEDLIGVELTDGNSEIILATRNGIAIRFDEQDVRTM-GRTAHGVKGI 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL  GD+V++M  V                                              
Sbjct: 694 SLNYGDEVVAMDSV---------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   ++  +LT +E G GKRT   ++R   R GKGI    +++  + G ++ +  +
Sbjct: 708 ------SDEDSEVLTATEFGMGKRTEVKEYRKQTRGGKGIINMKITE--KTGLVIGMKVI 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           N + +I++++  G +IR  V++I    R T+GV + +   D++VVS+  I   E  +
Sbjct: 760 NPDQEIMMITAAGLIIRTDVDQISQYGRNTQGVKLMTLNDDDKVVSLAAIHHEEDAE 816


>gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 836

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/909 (39%), Positives = 546/909 (60%), Gaps = 89/909 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++E    IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  ++ D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GS
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM         
Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL+LRL RLTGL R+ I +E   L   I + 
Sbjct: 413 -----------------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ + R+  II  EL+ ++++    RRT +    + ++EDED I  ED++VT++H G
Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F 
Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
             L  GD +I  A +                                             
Sbjct: 694 ARLRDGDYLIGAAPLN-------------------------------------------- 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++  +L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  
Sbjct: 710 ---------EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTT 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE- 905
           V  ++ +++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +     + 
Sbjct: 759 VQGDEDLMVVTDKGVIIRFGVESVSQTGRSAIGVHLIKMDADSVVATMTKVEKETAETDP 818

Query: 906 ----AESTE 910
               AE  E
Sbjct: 819 TEASAEEAE 827



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 17/231 (7%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V+  G VKR P++ ++  R  G     + + + D + ++ IV    +++  + LG   
Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 674

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV  +      A   A +    L  G+ +    P  ED+       V+  ++ G  ++
Sbjct: 675 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 725

Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
              S++  I   G + +K     +    +  + T   + D+++ T  G  +RF + ++  
Sbjct: 726 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 783

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             GR+++GV  I +     V +M  V    A+ D      +          
Sbjct: 784 QTGRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPD 834


>gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 845

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/924 (38%), Positives = 523/924 (56%), Gaps = 101/924 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +  +   +   I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPPA--PDHDRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 59  FDSGFRPDRGYNKCSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL +R+PN+LVNGG 
Sbjct: 119 GNDPAAAMRYTESRLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  ++NP+   D L+      I+GPDFPT A+ILG +G
Sbjct: 179 GIAVGMATNIPPHNLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGTSG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +R V  +E+ +  R  +VV+E+PYQVN   ++E IA LVR+ ++  I
Sbjct: 239 IEDAYRTGRGSVRMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGI 298

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DES+ R G R+V+ +KR A A V+LN L+++T LQ  F VNM+AL    P    L 
Sbjct: 299 SDIADESNSRSGMRIVVTIKRDAVAKVVLNNLFKHTQLQQNFGVNMLALVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +V  + +V+VRRT+Y L K  +RAH+L GL  A+  LDEV+ +IR SP+ + AR 
Sbjct: 359 QIIRHYVKHQMDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARP 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+++L RL  L R  I +
Sbjct: 419 ALMT--------------------------LLDIDEIQAVAILDMQLRRLAALERQRIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + IEI +  DIL    R   II+ EL+++ D+    RRT+I+    D+ DE+ I  
Sbjct: 453 ELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDKYGDDRRTKIIGFSGDVTDEELIAV 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITRTGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVQHFFVCSTHDWILFFTNK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+++    E+I  ++     E      Y+V ATK G
Sbjct: 573 GRVYRTKAYELPEANRNARGQHVANLMAFQPDEQIAQVIQIKNYEV---APYLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ KL+DF      G IA+ L   DE++       E+D+LL +  GQ +RF  +   +
Sbjct: 630 LVKKTKLTDFDSNRSGGLIAINLREGDELVGAVLAAAEDDLLLVSAEGQSIRFHATDEAL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+    GD+++ +++V                                
Sbjct: 690 RPM-GRPTSGVMGMRFNDGDELLGISVVKEG----------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                   +F+L  ++ G+ KRT+  D+ +  R GKG+      
Sbjct: 720 ------------------------KFLLVATDGGYSKRTAIEDYPVQGRGGKGVLTIQHD 755

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  + G LV    V+  D++  ++  G +IR P  ++R A R TKGV + +  +   +++
Sbjct: 756 R--KRGRLVGALIVDAEDELYAITSSGGVIRTPAGDVRKAGRQTKGVRLMNLGEGTTLLA 813

Query: 894 VERIRES-------EIVDEAESTE 910
           V R  +        E  +  E+ E
Sbjct: 814 VARNADEPSDVANGEAPEAPEAGE 837



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 90/235 (38%), Gaps = 13/235 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+  L+ + + R GG     + +R+ D +    + +    +L  S+ G
Sbjct: 620 PYLVLATKRGLVKKTKLTDFDSNRSGG--LIAINLREGDELVGAVLAAAEDDLLLVSAEG 677

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +  N G+ +  I             +++ AT  G 
Sbjct: 678 QSIRFHATDEAL-RPMGRPTSGVMGMRFNDGDELLGISVVK------EGKFLLVATDGGY 730

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + D+    R GK  + +        ++       E+++   T  G  +R P   +
Sbjct: 731 SKRTAIEDYPVQGRGGKGVLTIQHDRKRGRLVGALIVDAEDELYAITSSGGVIRTPAGDV 790

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           R  AGR + GVR ++L +G  ++++A      +D           + +      +
Sbjct: 791 R-KAGRQTKGVRLMNLGEGTTLLAVARNADEPSDVANGEAPEAPEAGEETTAPSE 844


>gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4]
          Length = 840

 Score =  847 bits (2187), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/908 (39%), Positives = 540/908 (59%), Gaps = 93/908 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      I  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++    +
Sbjct: 2   EPNIFDKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI G+ MGKYHPHG+++IY AL  MAQ WS+R +L++G GNFGS+DGD  AA 
Sbjct: 62  KPHRKSARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP VL +R+PN+LVNGG GIAVGMAT
Sbjct: 122 RYTEARLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN         ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     +  I+VTE+PY VNKA ++EKIAELV+ K+I  I  + DES
Sbjct: 242 GRGKIRVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+V+LNQL ++T LQ  F V M+AL   +P+   ++ +L+ ++ 
Sbjct: 302 NREGIRINIELRRDVNANVLLNQLLKHTQLQDSFGVIMLALVNNEPKVLNILQMLEYYLD 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++VV RRTKY LNKA +RAH+L GL  A+ ++DEV+RIIR S N   A+R LM+R   
Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++ Q +AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FELTDPQAQAIVDMRLRALTGLEREKLENEYKELEAK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+  ++LLG+IK+E+L + ++    RRT+I     DM  ED I  +D V+ ++
Sbjct: 456 IAELRAILADENKLLGVIKKEILVISEKYGDDRRTKIG-FEDDMSVEDLISDDDTVIAMT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGY+KR+ +  +++Q RGGKG  G+   DEDF+ DL + + H  ++FF++ G  Y+ K 
Sbjct: 515 NLGYIKRMSVDNFKSQNRGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N+L L  GE++T  +P  E     ++ Y+  ATK G V++ ++ 
Sbjct: 575 YEIPEAGRTARGTAIVNLLQLQPGEKVTAAIPMRE---IDDDKYLFMATKGGMVKKTRMC 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L TK G  +RF  +  R   GR S G
Sbjct: 632 EYSNMRKTGLQAILLREGDELIEVKVTDNTEDIFLATKFGMSIRFKETDAR-ITGRVSYG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ L +GD+VI M +    +                                      
Sbjct: 691 VIGMKLDEGDEVIGMQMASQGE-------------------------------------- 712

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L  SEKG+GKRT   +F++  R GKG+   +V++  + G LV 
Sbjct: 713 ---------------YMLVASEKGYGKRTRISEFKLQLRGGKGLLCYNVTE--KTGNLVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVSVERIRESE 901
           +  ++D   I+L++++G LIR+ V++I I  R T GV + S     D RV S+ ++RES 
Sbjct: 756 MKLLDDGRDIMLITNEGILIRMGVDDISIIGRNTSGVKLMSIDADSDVRVASIAKVRESS 815

Query: 902 IVDEAEST 909
             DE +  
Sbjct: 816 RQDEEDEN 823


>gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325]
 gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325]
          Length = 814

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/897 (41%), Positives = 552/897 (61%), Gaps = 85/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+    +G+ ++K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG++A Y  + R+AQD++ R  +++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVD + NYDG+ QEP VL +R PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ DN +I +  LM  I+GPDFPTGA +LGR+GI  AY TGRGS++
Sbjct: 182 IPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLLGRSGIVKAYTTGRGSVI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+I++TEIPYQVNKA ++EKIAEL R+K+I  I DLRDES+ +G R
Sbjct: 242 MRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQ  F VNM+AL    P+   L  +L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQGSFGVNMIALVDGVPKLLNLKEVLYYYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S   E A+  L+           
Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLI----------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q +AIL++RL RLTGL RD I  E   L   I++  D
Sbjct: 411 ---------------NEFSLSEIQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L I+K+ELL VK++    RR+ I+E  +  +E+ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVLEIVKEELLEVKEKFGDKRRSVIIEGQVDQIENEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED V  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   +         ++F+T+ G V+++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEGTSLMFSTRFGIVKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T E DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDEGDSLIDVQRITDEQDIMIVTANGQAIRINAEKVRQM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D VI M +V  +                                            
Sbjct: 693 LSPDDYVIGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  V+
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSVS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            N+ +++++D+G +IR+ V+ I    R   GV + +   D++V +V    + EI +E
Sbjct: 758 GNEDLMIMTDQGIIIRIDVSAISTLGRTATGVKVINLVDDQKVATVTLAAKEEIYEE 814


>gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 874

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/932 (38%), Positives = 530/932 (56%), Gaps = 108/932 (11%)

Query: 1   MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +    + E   +      I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MADETTPTAEGSAEEQPVLRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC+L   A  +L D+ ++TVDF+ NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKLMPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231
           VNG  GIAVGMATNIP HNL EV  G    +++P+   +     L+E I+GPDFPTGA++
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDG 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSIDAFIRHWVQHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  LM                          G + + E+Q  AILE++L RL  L R
Sbjct: 420 EIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E   IL+S  +   I+ +EL ++ ++    RR+++V    DM  E
Sbjct: 454 QKIVAEHDELQAKINEYNAILASPEKQRSIVSEELAAIVEKYGDDRRSKLVPFDGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++H GYVKR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP     ARG+ + N+L+    E+I  ++   + E      Y++ 
Sbjct: 574 FFTNKGRVYRSKAYELPDAGRDARGQHVANLLAFQPDEKIAQVLAIRDYE---AAPYLIL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS---------RDEILSVETCTQENDILLTTK 701
           ATK G V++  L D+      G IA+ L            DE++  E  + E+D+LL +K
Sbjct: 631 ATKGGLVKKTALKDYDSPRSGGVIAINLRETGADGADGTADELIGAELVSAEDDLLLISK 690

Query: 702 LGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
             Q +RF  +   +R   GR + GV+G+S  +GD+++SM++V                  
Sbjct: 691 KAQSIRFTATDEALRPM-GRATSGVKGMSFREGDELLSMSVVRPGT-------------- 735

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                  F+ T ++ G+ KRT+  ++R+
Sbjct: 736 ---------------------------------------FVFTATDGGYAKRTAVDEYRV 756

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R G GI+A  + +  + G+LV    V+++D+I+ ++  G +IR  V+E+R   R T G
Sbjct: 757 QGRGGLGIKAAKIVE--DRGSLVGALVVDESDEILAITLGGGVIRTRVSEVRETGRDTMG 814

Query: 880 VVIFSTAKDERVVSVERIRES-EIVDEAESTE 910
           V + +  K + VV + R  E+ +  DEA+  E
Sbjct: 815 VQLINLGKRDAVVGIARNAEAGQEADEADEIE 846


>gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20]
 gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20]
          Length = 842

 Score =  846 bits (2186), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/891 (40%), Positives = 547/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM +G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG+ ++Y AL RMAQ W++R +L++GQGN+GSVDGD  AA RYT
Sbjct: 63  KKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL+K    ++ DL K+TVD + N+D S QEP V+ AR PN+LVNG  GIAVGMATN+P
Sbjct: 123 ECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+D C+A I+N DID++ LM  ++ PDFPTG  I G +G++ AY TGRG +++R
Sbjct: 183 THNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIYGMSGVREAYLTGRGRVIMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE  S   ++IVVTEIPY VNKA +++ IA+L  EK+I  IA+  DESDR+G R+V
Sbjct: 243 ARAEIETGST-HDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A ++LN+LY+ T LQ+ F VN VAL   +P    L  ++K FV  R +VV+R
Sbjct: 302 IDVKRDANASIVLNKLYKMTMLQTSFGVNNVALVHGRPRLLNLKDLIKHFVEHRHDVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++RAH+L GL IA  N+DEV++IIR +  P  A   LM+R           
Sbjct: 362 RTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q+RAI+E+RL +LTGL +D +  E   +  +I    +IL
Sbjct: 411 ---------------FQLSEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +      +IK EL+ VK++    RR+ IV    +   ED    ++M++T+SH+GY+KR 
Sbjct: 456 VNDELCRKVIKDELIEVKEKYGDERRSEIVYSSEEFNPEDFYADDEMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLSEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +   +      D+   N+ YV+F TK+G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDAVNAYLRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+RV  GR + GVRG++L
Sbjct: 636 QNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVM-GRTATGVRGMTL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   D+V+ M  +   +A                                         
Sbjct: 695 DEDGQDEVVGMICIKDPEA----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VSE+G+GKR+   D+R +NR GKG++  +++  ++ G LV +  V
Sbjct: 714 ----------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNIT--DKTGKLVTIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
            D + +++++  G  IR+ V ++RI  RAT+GV + +  K ++ + SV ++
Sbjct: 762 TDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDEIGSVCKV 812



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 103/229 (44%), Gaps = 12/229 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 613 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 670

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +         ++  ++ G  
Sbjct: 671 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 725

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T END+++  K G  +R  ++ +R
Sbjct: 726 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDENDLMIINKSGITIRLKVADVR 785

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQR 762
           +  GR + GVR I+L K  D++ S+  V   + +          + + +
Sbjct: 786 IM-GRATQGVRLINLEKRNDEIGSVCKVTSENEEELIEEGEENTLESPQ 833


>gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
 gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154]
          Length = 849

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/902 (39%), Positives = 539/902 (59%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  I + +++++M+ S+L+YA++VI+ RA+PD+RDG+KPVHRRIL+ M++ G   +K
Sbjct: 3   EQNDSRIHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  ++ DL KDTV+F PNYDG  +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NP+     LME + GPDFPTG +++G++GI+ AY TGRG + 
Sbjct: 183 IPTHNLGEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVMGKSGIRRAYETGRGRVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+T   +EQI+VTE+PY VNKA ++E+I+EL R+KRI  I  +RDESDR G R
Sbjct: 243 VRAKVDIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           V I+++R ASA VILN LY+ T LQ+ FS NM+A+NG KP+  +L  IL A+++ + EV+
Sbjct: 303 VSIDVRRDASASVILNNLYKETLLQTNFSFNMLAINGGKPQTMSLKEILVAYLSHQREVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA+ RAH+L GL IA+ ++D ++ IIR S   E A+  L+           
Sbjct: 363 RRRTAFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLI----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL RD I +E   L   I +  D
Sbjct: 412 ---------------DGYSLSDKQAQAILDMRLVRLTGLERDKIEDEYQKLVALIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-TVSHLGYV 548
           IL+   R+  II  ELL ++ +    RRT +  G +   +++ ++ E+ V+ T++  GY+
Sbjct: 457 ILAHEERVDQIIYDELLEIQTKFGDARRTELQVGDVTNLEDEDLIEEEDVIVTLTRNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP + ++AQ RGG+G  G+ + DEDFV  +   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRVPQAEFKAQNRGGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              QA+G  ++N+L     E+I T++    +     + Y+ F T+ G V+R  +++F  I
Sbjct: 577 YGRQAKGIPVVNLLKFEGDEKIQTVINVRGEAGESKD-YLFFVTRLGVVKRTAVNEFSNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE+LSV+       IL+ TK G  VRF    +R+  GR++ GVRGI 
Sbjct: 636 RTNGLRALTLRDDDEVLSVQITDGTQSILIATKDGYSVRFTEDDVRIM-GRSAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L                                                      +    
Sbjct: 695 LR-----------------------------------------------------DGDVV 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              ++      +L ++EKG+GK+T   ++ I  R GKGI+  ++++ N  GAL  +  ++
Sbjct: 702 VGSDVVNPNDNVLVITEKGYGKQTPVSEYPIKGRGGKGIKTVNITEKN--GALAGMTIIH 759

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ I++ + +G +IR   + +    RAT GV +       +V ++ ++   E+V  AE+
Sbjct: 760 GDEDIMVTTTQGVMIRFTASSVSQTGRATLGVRLIRLEDGAKVATLAKVDHEEVVVSAET 819

Query: 909 TE 910
           ++
Sbjct: 820 SQ 821



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 95/256 (37%), Gaps = 17/256 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    +D +  V+ LG VKR  ++ +   R  G     + +RD+D V  + I     S+L
Sbjct: 607 EAGESKDYLFFVTRLGVVKRTAVNEFSNIRTNG--LRALTLRDDDEVLSVQITDGTQSIL 664

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G+  +     + I    A G   I         R+         +    N  V+ 
Sbjct: 665 IATKDGYSVRFTEDDVRIMGRSAAGVRGI---------RLRDGDVVVGSDVVNPNDNVLV 715

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCV 706
            T+ G  ++  +S++  I   G   +K     +    +  +     + DI++TT  G  +
Sbjct: 716 ITEKGYGKQTPVSEYP-IKGRGGKGIKTVNITEKNGALAGMTIIHGDEDIMVTTTQGVMI 774

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  S++    GR ++GVR I L  G +V ++A V H +                     
Sbjct: 775 RFTASSV-SQTGRATLGVRLIRLEDGAKVATLAKVDHEEVVVSAETSQNVSRETPLDGKQ 833

Query: 767 GDTEEITSLKNDSSVE 782
            +       + +S   
Sbjct: 834 IEQVAELLDRANSDEN 849


>gi|307693840|ref|ZP_07636077.1| DNA gyrase subunit A [Ruminococcaceae bacterium D16]
          Length = 852

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/910 (40%), Positives = 545/910 (59%), Gaps = 92/910 (10%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++      EE    ++ I +  +  EM++SY+ YA++VI+GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSKKPQYDPEEIRFPDQVIKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M + G+  +K + K A   G+V+G+YHPHG+ ++YDAL R+ QD+S+R +L++G GNF
Sbjct: 61  YAMYEDGLTSDKPFKKSATCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGDPPAA RYTE R+ K ++ +L D+ K+TVD+ PN+D S +EP VL +R+PN+LVN
Sbjct: 121 GSIDGDPPAAYRYTEARMSKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNL EV++  + V+DN +  LD LME I+GPDFPT  +I+GR+GI
Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIMGRSGI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AYATG+G I +R  +  E+   DR +I+VTEIPYQVNK  +++ +A+ V +KR+  I+
Sbjct: 241 RAAYATGKGHIRVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLI 355
           D+RDESDR G R+VIELKR A+  V+LN+L   T LQ  F++NM+AL     +P+  TL 
Sbjct: 301 DIRDESDRNGMRIVIELKRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLR 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++AF+E+++ RRT Y   KA++RAH+L GL IA  N+DEV++IIR S +   A+ 
Sbjct: 361 EILDEYIAFQEQIITRRTIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYD--NAKE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM R                            L +VQ +AIL++RL  L GL R+ +  
Sbjct: 419 RLMTR--------------------------FGLDDVQAQAILDMRLKALQGLDREKLEA 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I     +LS    L  ++K EL  ++D+    R+T I     D++ ED I  
Sbjct: 453 EYKELEERIAYYDKLLSDEGLLRQVLKDELTEIRDKYGDQRKTEIAFVEDDLDIEDLIEE 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  V T++  GY+KR P+S Y AQ +GG+GR G+  RDED V D+F  STH  + FF+  
Sbjct: 513 EQCVFTLTQAGYIKRTPVSEYAAQSKGGQGRKGITTRDEDCVVDVFTASTHDYLFFFTDT 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY++K +++P     A+G  ++NIL + QGE++ T++   E +    +LY+V  T++G
Sbjct: 573 GKVYRKKGYQIPESGKTAKGTNIVNILQVEQGEKVQTMIHTRELD--NPDLYLVMVTRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R  ++    I  SG  A++L+  D+++SV        IL+ T  G  V F  + +R 
Sbjct: 631 TVKRLPVTALKNIRNSGIRALRLEEGDQLISVRETDGTKKILIATHDGMAVCFDENDVRP 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR++VGVRGI L +GD V+S A                                    
Sbjct: 691 M-GRDAVGVRGIRLREGDYVVSAA------------------------------------ 713

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                 + +LT++EKG+GKRT   D+RI+NR G GI+   V++ 
Sbjct: 714 -----------------RATAGRTVLTITEKGYGKRTPVEDYRITNRGGIGIKNYAVTE- 755

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSV 894
            + G +V +  V+ ++ ++LV+  G LIR  V+ IR A RAT+GV++     + ++V+S+
Sbjct: 756 -KTGKIVGIKVVDGSEDLLLVTQAGILIRTHVDAIREAGRATQGVIVMRFKEEGDKVISL 814

Query: 895 ERIRESEIVD 904
                 E  +
Sbjct: 815 ALAEREETAE 824


>gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
 gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12]
          Length = 808

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/890 (39%), Positives = 516/890 (57%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  V +  EM++SYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+  N+ Y
Sbjct: 3   EKNKIILVGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R  LI+G GNFGS+DGD PAA RYT
Sbjct: 63  RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  L+ D+ KD VDF PNYD S +EPVVL  + P +L+NG  GIAVGMATNIP
Sbjct: 123 EVRLSPIASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +I+ P+ +++ L+  I+GPDFPTG  I+G  GI+ +Y TG+G +++R
Sbjct: 183 PHNLGELIDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTKGIRESYLTGKGKLIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+T    + I++ EIPY VNK+ +L +IAELV+E++I  I DLRDESDR G RVV
Sbjct: 243 GKIAIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+     +++NQLY++T LQ+ F V M+A+   +P+ F L  +L  F+  R+ VV R
Sbjct: 303 IELKKDVDPQIVINQLYKHTQLQTTFGVIMLAILDGQPKVFNLKELLNIFLEHRKNVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KAR RAH+L GL IA+ +LDEV+ IIR S N E AR +LM             
Sbjct: 363 RTKYDLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLM------------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+++Q +AIL++RL +LT L ++ +  E+N +   I +   IL
Sbjct: 410 -------------LKFKLTQIQAQAILDMRLHQLTRLEKEKLLEEMNQIKENIAQLEKIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT-RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
                L  +I +EL  +K +    R+T    E   D+  ED +     VV ++   Y+KR
Sbjct: 457 KDEKELWRVISEELKEIKRKYADERKTLIEEEEKSDITIEDILPDNPEVVCITQDSYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS Y+ QRRGGKG + +   ++D +T   + ST +++  FS+ G VY  K + L   S
Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G  +   L+++  E+IT I+   E      NLY  F T  G V++  + +F  + +
Sbjct: 577 RQSKGVPIKEYLNIDNDEKITEIISVNEFP---KNLYFFFVTSKGIVKKTSIEEFENVRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+KL   D +++V   +  ++I++ TK G  +RF    +R   GR + GV GI L 
Sbjct: 634 SGIYAIKLGEEDYLVNVFLTSGNDEIMIFTKKGNAIRFHEKDVREM-GRIAQGVIGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI   I   +                                              
Sbjct: 693 KDDSVIGGVIFKES---------------------------------------------- 706

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                  + I+ V+  G GKR +  +F +  R G G+RA  ++   + G LV V  V++N
Sbjct: 707 -------KQIVLVTTYGIGKRVNPNEFSVQKRGGMGVRAIKITP--KTGDLVGVKNVSEN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++ + +G +IR+PVN I I SR ++GV +    +D+ VVS++ +   
Sbjct: 758 DEILISTKRGQIIRIPVNNIPILSRNSQGVKLVKLNEDDYVVSIDLVENE 807


>gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
 gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991]
          Length = 824

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/900 (42%), Positives = 551/900 (61%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  +  V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  +K +
Sbjct: 4   NKDKLLQVDIAKEMKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R +L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF PNYDG  +EP V+ AR+PN+LVNG  GIAVGMATNIP
Sbjct: 124 EARMSKIAMEMLKDINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGE +D   A++DNPDI +  LM   I GPDFPTG +ILGR GI+ AY TGRGSI+I
Sbjct: 184 PHNLGETIDAIFAIMDNPDITVLELMDNYIFGPDFPTGGMILGRAGIRQAYETGRGSIMI 243

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+E+    + +IVVTE+PYQVNKA ++ KIA+LVREK+I  I  L DES+R+G R+
Sbjct: 244 RCKHHLEEMDNGKTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRI 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++    DV+LNQL+R TSLQ+ F VNM+AL+   P++  +  +L  ++  + +V V
Sbjct: 304 VIELRKDVQVDVVLNQLFRMTSLQTSFGVNMLALHDRSPKQMGIKELLGHYIDHQIDVTV 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L KA DRAH+L GL IA+ ++DE++ IIR S N   AR  LM+           
Sbjct: 364 RRTKYDLKKAEDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLME----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  AILE+RL RLTGL RD I NE   L   I +  DI
Sbjct: 413 ---------------NFELSEIQANAILEMRLRRLTGLERDKIENEYQELLALIIDLKDI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++  R+L II+ EL  VK++    RRT I +   DM+DED I  ED+V+T++  GY+KR
Sbjct: 458 LANHDRVLQIIRDELTEVKNKYGDERRTEISDADYDMQDEDLIPVEDIVITMTTNGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y  Q RGG+G  G+ + ++D V  L  +STH  +L F+++G VY+ K +++P  S
Sbjct: 518 MPTDTYHTQNRGGRGIKGMAVNEDDIVEMLVPMSTHDFLLLFTNIGKVYRIKGYKVPNAS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L+L++ E++  ++P   D       Y++F TK+G V+R   ++F  I +
Sbjct: 578 RTAKGLPVVNLLNLDKDEKVKALVPMKVD---HEAEYLMFVTKNGLVKRVPSAEFASIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   DE++ V+  T +++I++    G+ VRF    +R   GR++ GV+G ++ 
Sbjct: 635 NGKIAITLREGDELVGVKETTGDDEIIIAGSNGKAVRFHEDGVRPM-GRSASGVKGFNV- 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            G  V+ MA                                                   
Sbjct: 693 DGAVVVGMATSRDGT--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L VSE G+GKRT+  ++R++ R  KG++  +++   + G LV+V  VN +
Sbjct: 708 --------HLLAVSENGYGKRTAIDEYRMTTRGAKGVKTINITP--KTGDLVSVRAVNGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +  ++V++ G +IR+ V++I I SR T+GV + + A+ E V  V  + +     +  ++E
Sbjct: 758 EDAMIVTNSGIIIRIEVDKIGIYSRNTQGVKLINVAEHEVVAKVAIVEKQAEEAKDTASE 817


>gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
 gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476]
          Length = 838

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/901 (38%), Positives = 540/901 (59%), Gaps = 87/901 (9%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++  I+ + +    G+ +  +  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MSDKEILEAADSGNTGVQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G+  NK + K AR  G+V+GKYHPHG++A+YDA+ R+AQD+++R+ L++G GNFGS
Sbjct: 61  MYDSGITPNKPHSKSARTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE RL K A  LL DLGK+TVD+ PNYD S QEP VL AR+PN+LVNG 
Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    ++DNPD+  + LME++ GPDFPTG VI GR GI +
Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVIRGREGIIS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ I+    I++    +  I++TEIPYQVN++ +++KI ELVR+K++ +I+++
Sbjct: 241 AYETGRGSLTIQSSYKIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNV 300

Query: 300 RDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR     ++IELK+ A   V+LN+L+++T LQ  + V M+AL    P   +L  IL
Sbjct: 301 HDGADRNSPVDIIIELKQNAIPQVVLNKLFKHTQLQVGWGVIMIALVDGVPRTLSLREIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++  +E+V+ RRT++ L KA  RAH++ GL IA+ ++DEV+ IIR S   + A  +L 
Sbjct: 361 HYYILHQEDVIRRRTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLS 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            LSE Q  AIL+++L RLTGL R+ ++ EL 
Sbjct: 421 ER--------------------------FGLSEAQCTAILQMQLRRLTGLEREKLQEELA 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  +I     IL+    +  +IK+EL  +K   +TPRRTRI     D++ ED I  E+M
Sbjct: 455 ELKEKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDVEDLIADEEM 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VVT+++ GY+KR+P++ YR Q+RGGKG  GV +++ DFV  LFI STH  +LFFSS G V
Sbjct: 515 VVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHLFIASTHNYMLFFSSAGKV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y++KV+ +P     ARG A++N+L L++GE I   +   E      + +++F TK G V+
Sbjct: 575 YRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAAIATKEFP---EDEFLMFGTKEGMVK 631

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  +S + +  + G IA+ L   DE+++V+       + + +  G+ + +  S +R   G
Sbjct: 632 KTAMSLYDRTRQDGLIAINLREGDELIAVKRVKPGEKVAMVSSAGKAISWDESEVRAM-G 690

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R+++GVRG+++  G  V+ + I                                      
Sbjct: 691 RDTMGVRGMTVPDGVHVLGLEIASPG---------------------------------- 716

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                              + I  ++E+G+GKRT   ++ + +R G+G+    ++   + 
Sbjct: 717 -------------------KEIFVITERGYGKRTPVEEYPLHHRGGQGVFTITMTA--KK 755

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G L A+  V   D ++++S++G ++R  V++I    RAT+GV + +    +RV +V    
Sbjct: 756 GQLAAMKVVTSEDALMIISEEGVVMRTSVSDISQLGRATQGVKVMNVDGKDRVSAVAIAP 815

Query: 899 E 899
           +
Sbjct: 816 D 816



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 21/239 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-----IRVFAGRNSVGVRGISLA 730
           + LD  DE++++   ++ +            RF +S      I     R   G+    L 
Sbjct: 394 IALDHIDEVIAIIRGSRTD---KEASDKLSERFGLSEAQCTAILQMQLRRLTGLEREKLQ 450

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +      +A +    A Y   +     M    +    + +   +    + + G   +   
Sbjct: 451 EE-----LAELKEKIAYYKRILADEHLMRQVIKEELQEIKGRFNTPRRTRIAGPAKDIDV 505

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E+ ++T++  G+ KR     +R   R GKG++  ++ + + +  L   F  + +
Sbjct: 506 EDLIADEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGMQGVNLKENDFVEHL---FIASTH 562

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
           + ++  S  G + R  V EI  A R  +G   V +    K E +V+   I   E  ++ 
Sbjct: 563 NYMLFFSSAGKVYRKKVFEIPEAGRHARGTAVVNLLKLDKGESIVAA--IATKEFPEDE 619


>gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190]
 gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190]
          Length = 839

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/918 (38%), Positives = 511/918 (55%), Gaps = 97/918 (10%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+ +  +            I  V I  EMQ SY+ YA++VI+GRA+P + DGLKPVHRR
Sbjct: 1   MTDTLDPTVPPTGGAGGGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M + G   ++ YVKCAR+ GEVMG YHPHG++AIYDAL R+AQ WS+R  LI+GQG
Sbjct: 61  VLYSMGENGFRPDRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTECRL   A  +L D+ ++TVDF  NYDG  QEPVVL +R PN+L
Sbjct: 121 NFGSRGNDPAAAMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV  G V  ++N +   +     LM  I GPDFPT  +I
Sbjct: 181 INGSVGIAVGMATNIPPHNLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI++AY TGRGSI +R V  +E+ +  R  +VVTE+PYQVN   ++E IA +VR+ 
Sbjct: 241 VGRDGIESAYRTGRGSIRMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDG 300

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           ++  IA++ DE SDR G R+V  LKR A A V+LN LY++T LQ+ F VNM+A+    P 
Sbjct: 301 KLTGIAEINDESSDRIGMRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDGVPR 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +++ ++  + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   
Sbjct: 361 TLRLDQVVRNYIRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETV 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + AR+ L+                            + + ++Q +AIL+++L RL  L R
Sbjct: 421 DVARQGLI--------------------------DLLDVDDIQAQAILDMQLRRLAALER 454

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I +EL  +  EI +  DIL+   R   I++ EL  + D+    RR+R+V    D+ +E
Sbjct: 455 QKIIDELAEIEREIADYQDILARPERQRQIVRDELTEIVDKHGDERRSRLVADDGDVTNE 514

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +L
Sbjct: 515 DLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGKGVQGATLKQDDIVAHFFVCSTHDWML 574

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP  +  ARG+ + N+L+L   E I  +M   +        Y+V 
Sbjct: 575 FFTNKGRVYRLKAYELPEANRNARGQHVANLLALQPDEHIAQVMQIKDY---QAAPYLVL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT+ G V++++L DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  
Sbjct: 632 ATRSGLVKKSRLEDFDSNRSGGLIGINLRDEDELVGAVLCSADDDLLLVSAEGQSIRFTA 691

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV G+    GD+++S+ +V                           
Sbjct: 692 DDAALRPM-GRATSGVLGMRFNDGDRLLSIGVVQD------------------------- 725

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++F+L  +  G+ KRT   D+ +  R GKG+ 
Sbjct: 726 ----------------------------DKFVLVATAGGYAKRTPIEDYPVQGRGGKGVL 757

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                +    G LV    V  +D++  ++  G +IR    E+R A R TKGV + +   +
Sbjct: 758 TLQYDRR--RGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGDN 815

Query: 889 ERVVSVERIRESEIVDEA 906
             + +V R  E +  D  
Sbjct: 816 ATLQAVARNAEDDADDSE 833


>gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec]
 gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec]
          Length = 837

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/916 (40%), Positives = 515/916 (56%), Gaps = 94/916 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPPPG---DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYD L R+AQ WSLR  L++G GNFGS 
Sbjct: 58  YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 118 GNDPPAAMRYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +D+P+   + L+E    II+GPDFPT  +I+GR G
Sbjct: 178 GIAVGMATNIPPHNLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIVGRNG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E+    R Q+VVTE+PYQVN   + EKIAELVR+ ++  I
Sbjct: 238 IEDAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGI 296

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+RDE S R G R+VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L 
Sbjct: 297 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ++  +V  + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + E AR 
Sbjct: 357 QMISYYVEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 417 QLMAR--------------------------FSLSEIQATAILDMQLRRLAFLERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I E   IL+S  R   II QEL  V ++    RRTR+V    DM  ED I R
Sbjct: 451 EAAELRAKIDELEAILASPVRQREIIGQELAEVVEKFGDERRTRLVPFEGDMSVEDLIAR 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+ +Q ERI  +M   +        Y+V ATK G
Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVMAIQDY---QAAPYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
             ++  L+DF      G +A+ L   DE++S       +D+LL ++  Q +RF      +
Sbjct: 628 LCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQL 687

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+   + D+++SM +V                                
Sbjct: 688 RPM-GRATSGVIGMRFDEADELLSMDVV-------------------------------- 714

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                              +      +L  +  G+ KRT   ++ I  R GKG+    + 
Sbjct: 715 -------------------VPESPADLLVATSGGYAKRTPLAEYPIQGRGGKGVLTAKI- 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++  G LV    V  NDQ+  ++  G ++R    ++R A R T GV +       +VV 
Sbjct: 755 -VSTRGGLVGALVVEPNDQLYAITSNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVG 813

Query: 894 VERIRESEIVDEAEST 909
           V R  ++   D    T
Sbjct: 814 VARNADANDSDGDGET 829



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G  K+  L+ + + R GG     + +RD+D +    +V+    +L  S   
Sbjct: 618 PYLVLATKRGLCKKTALTDFDSNRAGG--LVAINLRDDDELISARLVAPGDDLLLVSRNA 675

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +  ++ + + ++          +   ++ AT  G 
Sbjct: 676 QSIRFHADDEQL-RPMGRATSGVIGMRFDEADELLSMDVVV----PESPADLLVATSGGY 730

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+++    R GK  +           +        + +   T  G  +R     +
Sbjct: 731 AKRTPLAEYPIQGRGGKGVLTAKIVSTRGGLVGALVVEPNDQLYAITSNGGVLRTVAKDV 790

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           R    R ++GVR I L  G QV+ +A    A+    +        +A 
Sbjct: 791 RRAQ-RQTMGVRLIDLEAGVQVVGVARNADANDSDGDGETAGSDGTAG 837


>gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
 gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b]
          Length = 815

 Score =  846 bits (2185), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++ T+V++ N  G LV V  
Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 813

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/871 (41%), Positives = 514/871 (59%), Gaps = 87/871 (9%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
            RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG++A+YD + RMAQD+
Sbjct: 9   ARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDF 68

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGSVDGD  AA RYTE RL K AH +L D+ K+TVDF PNYDGS QEP
Sbjct: 69  SLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEP 128

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           +VL  R PN+LVNG  GIAVGMATNIP HNL EVVD C+ ++ +P+  +DALMEII  PD
Sbjct: 129 LVLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPD 188

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEK 283
           FPT  +I G  G+K+ Y TGRG +V+R   H E     + + I+V E+PYQVNK  + E+
Sbjct: 189 FPTAGIIYGINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQER 248

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           +AELV EK++  I+ ++DESD+ G R+VIELKRG   +V+LN LY+ T LQ  F +NMVA
Sbjct: 249 MAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVA 308

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           L   +P    L  ++  F+  R EVV RRT + L KARDR HVL GLA+A+AN+DE +RI
Sbjct: 309 LVDGQPRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIRI 368

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR SP P  A+ ELM                              LS+ Q + IL++RL 
Sbjct: 369 IRESPTPPVAKAELMS--------------------------LYRLSDTQAQEILQMRLQ 402

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTR 519
           RLTGL +D I  E   +   I++ LDIL+   R+  II +EL +V++E        RR+ 
Sbjct: 403 RLTGLEQDKIVAEYKEVMAHIEDLLDILAKPERVSTIIGEELTAVREEFGQTKLGARRSE 462

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I     D+  ED I   DMVVT+SH GY+K  PLS YRAQ+RGG+G+     +++D++  
Sbjct: 463 IEHSAQDLSTEDLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQ 522

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           LFI +TH  +L FS+ G +Y  KVW +P GS  +RG+ ++N+  L +GE+I  ++P   D
Sbjct: 523 LFIANTHDYILCFSNRGRLYWLKVWEVPAGSRGSRGRPIVNMFPLQEGEKINVVLPLTGD 582

Query: 640 ES-SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                 + YV  AT  G V++  L +F    ++G IA+ LD  D ++       ++D++L
Sbjct: 583 MRSFPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLDDGDYLIGAALTDGQHDVML 642

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G+ VRF  + +R   GR + GVRG++L     VI+M +                  
Sbjct: 643 FSDGGKAVRFDENDVRPL-GRQARGVRGMTLEDSQSVIAMLVAED--------------- 686

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                + Q +LT +E G+GKRTS  ++ 
Sbjct: 687 -------------------------------------ESQSVLTATENGYGKRTSIVEYT 709

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R  KG+ A   S+ N  G +VA   V+ +D+I+L++D G L+R  V EIR   RAT+
Sbjct: 710 RHGRGTKGMIAIQQSERN--GKVVAATLVHADDEIMLITDTGVLVRTRVAEIRELGRATQ 767

Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           GV + +  +   +  ++RI E++  +   + 
Sbjct: 768 GVTLIALDEGATLSGLQRIVENDANENDATD 798



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 14/232 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             ++  V   + +G VK+  L  +   R+ G     +   D D++    +      V+ F
Sbjct: 586 FPKDRYVFMATSMGTVKKTALDEFSNPRKAGIIAVNLD--DGDYLIGAALTDGQHDVMLF 643

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +     +     QARG   + +    +  +    M   ED     +  V+ AT
Sbjct: 644 SDGGKAVRFDENDVRPLGRQARGVRGMTL----EDSQSVIAMLVAED----ESQSVLTAT 695

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  + ++ +  R   G IA++      ++++      +++I+L T  G  VR  
Sbjct: 696 ENGYGKRTSIVEYTRHGRGTKGMIAIQQSERNGKVVAATLVHADDEIMLITDTGVLVRTR 755

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           ++ IR   GR + GV  I+L +G  +  +  ++  DA+ ++        +  
Sbjct: 756 VAEIREL-GRATQGVTLIALDEGATLSGLQRIVENDANENDATDTTDEATPP 806


>gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
 gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ]
          Length = 814

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/885 (39%), Positives = 520/885 (58%), Gaps = 83/885 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++   +N+ Y K AR+ 
Sbjct: 5   INIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ ++YDAL RMAQ++S+R  +++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TV FRPNYD S  EP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 ASEFLADIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            DG +  +DNP  D++ L+ +++GPDFPTGA I G  G+  AY TGRGSI IRG + IE+
Sbjct: 185 CDGLLHQLDNPTCDINELLALVKGPDFPTGASIYGGKGLIEAYTTGRGSIKIRGKAEIEE 244

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
              D + +V+ EIPY +NK++++EKIA L+ E RI  ++DLRDESDR+G R+V++LK+G 
Sbjct: 245 RKKDHQSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLKKGV 304

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             D+++N LY+YT L++ F +NM+ +   +P    +  +L+ F++ R EVV+RRT + L 
Sbjct: 305 IPDIVINALYKYTPLETSFGINMLVVADNRPALLNIQQVLEHFLSHRREVVLRRTAFDLR 364

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                  
Sbjct: 365 KSEERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMER------------------ 406

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE Q +AIL++RL RLT L R  + +E N L   I+    IL +   L 
Sbjct: 407 --------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIKLIEYLRSILENEEVLR 458

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           G+I+ E+  +KD+  TPR+T I+E L  +   D I  ED+V+T+S  GY+KR  +  Y+ 
Sbjct: 459 GVIRDEITEIKDKYATPRKTEILEDLEGINILDLIPDEDVVITLSRRGYIKRTKVDSYQQ 518

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G  +
Sbjct: 519 QKRGGKGVAGVSTSGDDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHI 578

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            N+L +++ E + T +   E        Y +F T+ G V+R+    +     +G IA+ L
Sbjct: 579 ANLLPMDKEEFVATALAIREFSF---ERYFLFVTRKGMVKRSCTDLYKNCRSTGIIAVTL 635

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+V+      ++LL T  G   RF IS IR   GR + GV+GI+L   D+V + 
Sbjct: 636 KEGDELLTVKEIDDNAEVLLATNQGLSNRFHISGIRP-TGRAAAGVKGIALKGQDRVAAG 694

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I+     +                                                   
Sbjct: 695 VIMTGNGRNE-------------------------------------------------- 704

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +LT+S  G+GKRTS   + + NR G G+    V+   + G ++    VN +D+++L++ 
Sbjct: 705 -VLTISAHGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVNADDELLLLTS 761

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +IR+ V++I    RAT+GV++     +  V   + +  S+ +
Sbjct: 762 ANKIIRLSVSDISAVGRATQGVMLVRMEGEVTVTGFDLVDPSDPI 806


>gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5]
 gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5]
          Length = 928

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/937 (40%), Positives = 542/937 (57%), Gaps = 99/937 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + ++ ++I DE++ SYL YA++VI+ RA+PD+RDG KPVHRR+++ M  +  ++NK Y 
Sbjct: 2   SESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YDA+ RMAQD+SLR  +++GQGNFGS+D DPPAA RYTE
Sbjct: 62  KSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K  H +L DL KDTVD+  NYDGS + P VL AR PN+L+NG  GIAVGMATN+  
Sbjct: 122 VRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++ C+A  +NP I  + LM  I GPDFPTG +I GR GI +AY TG+G + +RG
Sbjct: 182 HNLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIYGRAGILDAYRTGKGRLHVRG 241

Query: 253 VSHIEKTS-----GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
              IE  S      DRE+IV TE+PYQ NKA ++E+IAELVR+K+I  I ++RDESD+ G
Sbjct: 242 RYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDKDG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+L+RG +A+VI+N L+  T L+S FS+NMVAL+  +P+  TL  ++ AFV  R+E
Sbjct: 302 MRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQPKLLTLRQLIAAFVRHRQE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + LNKAR R H+L GL +A+AN+DE++  I+ S N   AR  L+  +W +  +
Sbjct: 362 VVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGSGSV 421

Query: 428 KDLIDLIDDSSYTI---------------GSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
             ++      S                   +  +  LS  Q  AIL+++L RLTGL +D 
Sbjct: 422 VAMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLEQDK 481

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           +  E   L  EI     IL    +L+ II  E++ ++D     RRT I++  +D   ED 
Sbjct: 482 LTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDERRTDIIDSRMDFNREDL 541

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  + +V+TVS  GY K  P+  Y AQ+RGGKG+S   M+++D +  L + STH +VL F
Sbjct: 542 IPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLIVTSTHATVLCF 601

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------- 638
           +  G V+  + + +PI S  ARG+ L+N++ LN  E +TTI+P P+              
Sbjct: 602 TDTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTTILPIPKIVEELSSKGETSAD 661

Query: 639 ----------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
                     D +     +V FAT +G V+R +L  F  I  +G IA+ L+  D+++S  
Sbjct: 662 VTLDSDDLLDDSTQAEPPFVFFATANGTVKRVELKQFANIRSNGLIAVGLEEGDKLVSAR 721

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                 +++L    G+ +RF  +  R   GR + GVRG+ L   + + S+ ++     + 
Sbjct: 722 ITNGSQEVMLFASSGKAIRFNETDARAM-GRTAKGVRGMRLTADEFIKSLVVIEDDVRE- 779

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                              IL   E GF
Sbjct: 780 ---------------------------------------------------ILIACENGF 788

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT   +F   NR G G+ A   S  N  GALV    V+  D IIL+SDKGTL+R PV 
Sbjct: 789 GKRTFIDEFNTQNRGGGGVIAIKTSTRN--GALVRATKVDSTDDIILISDKGTLVRTPVE 846

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +  + R T+GV +   +KDE++V++ R+   E  +E
Sbjct: 847 HVASSGRNTQGVTLIRLSKDEKLVAMARVEHEEGNNE 883



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 100/263 (38%), Gaps = 14/263 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                  V   +  G VKRV L  +   R  G     V + + D +    I +    V+ 
Sbjct: 674 TQAEPPFVFFATANGTVKRVELKQFANIRSNG--LIAVGLEEGDKLVSARITNGSQEVML 731

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+S G   +            A+G   +  + L   E I +++   +D        ++ A
Sbjct: 732 FASSGKAIRFNETDARAMGRTAKG---VRGMRLTADEFIKSLVVIEDDVRE-----ILIA 783

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRF 708
            ++G  +R  + +F   NR G   + + +       +        +DI+L +  G  VR 
Sbjct: 784 CENGFGKRTFIDEFNTQNRGGGGVIAIKTSTRNGALVRATKVDSTDDIILISDKGTLVRT 843

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +   +GRN+ GV  I L+K +++++MA V H + + +      +  + + +     
Sbjct: 844 PVEHVAS-SGRNTQGVTLIRLSKDEKLVAMARVEHEEGNNELIDAMREDGTFEVKGQEQM 902

Query: 769 TEEITSLKNDSSVEGNISEERCQ 791
             +  +     +   + S     
Sbjct: 903 DVDAANSDATETDFDDTSHTETD 925



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  +    +  + +  +  +   ++L  ++  ++TVS  G+ K     D+    R GKG 
Sbjct: 516 EIRDNFGDERRTDIIDSRMDFNREDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGK 575

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFS 884
            AT + + + I  L+     + +  ++  +D G +  +   E+ IASR  +G   V +  
Sbjct: 576 SATAMKEDDVIDHLI---VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIG 632

Query: 885 TAKDERVVSVERIRE--SEIVDEAEST 909
              DE V ++  I +   E+  + E++
Sbjct: 633 LNADETVTTILPIPKIVEELSSKGETS 659


>gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
 gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44]
          Length = 803

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/885 (42%), Positives = 534/885 (60%), Gaps = 84/885 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+N+Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K ARI G+V+GK
Sbjct: 1   MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ ++YDA  R+AQD++ R LL++G GNFGS+DGD  AA RYTE R+ K    +L 
Sbjct: 61  YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PNYD S QEP VL A+ PN+L+NG  GIAVGMATNIP HNL EV +G   
Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +IDNPD+ +D LM  I+GPDFPTGA+ILGR GIK AY+TGRGS+ +R  + IE+ S  + 
Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALILGREGIKKAYSTGRGSVKMRARATIEEMSKGKH 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +IVVTEIPYQVNKA ++E IA L R+K I  I  LRDESDRQG R+VIEL+     D++L
Sbjct: 241 KIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N+LY++T LQ  F V M+AL    P    L  +L  ++  R +V+VRRT++ LNKA  RA
Sbjct: 301 NKLYKHTQLQETFGVIMLALVDGHPRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEARA 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ ++DEV+  IR S   E AR  LMQ+                        
Sbjct: 361 HILEGLLIALDHIDEVIATIRSSQTDEIARNALMQK------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE Q  AIL++RL RLTGL R+ I  E   L   I++   IL++ +R   IIK E
Sbjct: 397 --FGLSEKQAVAILDMRLRRLTGLEREKIEEEYKELLALIEDLKAILANEARQRQIIKDE 454

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  +K +   PRR+ I     D++ ED I  E+MV+T++  GY+KR+  +VYR Q +GG 
Sbjct: 455 LDDMKKKYGDPRRSEITIDTSDLDVEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGA 514

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILS 623
           G  G+  +++D+VT +  V TH ++LFF+S G  Y+ K + +P  GS  +RG A++N+L 
Sbjct: 515 GVIGMKTKEDDYVTQIMHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLP 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L  GE +TT++   + E    ++ +   T+ G V+R  + ++  I RSG  A+ LD  D 
Sbjct: 575 LAVGESVTTMI---DLERVHEDVNLFMVTEFGVVKRTAIEEYRNIRRSGLNAINLDEGDR 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           ++SV   T   DIL+ TKLG  +RF    +R+   R + GVRGI L  GD V+   ++  
Sbjct: 632 LISVNVTTGNQDILIGTKLGIAIRFSEHDVRLMK-RAAHGVRGIKLNAGDVVVGAGVLNT 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            +                                                   E  + T+
Sbjct: 691 DE--------------------------------------------------SEAQVFTI 700

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SE+GFGKR  +  + +  R GKG +   ++  N+ G +VAV  V+++D+++L+S++G +I
Sbjct: 701 SEEGFGKRNDAEAYTLQKRGGKGSKNFKIT--NKTGDVVAVEVVHNDDEVMLISEQGKII 758

Query: 864 RVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  +N+I +   +A  GV   +  + ++V S+  I  +EI +E E
Sbjct: 759 RFNMNDIAVKKGKAISGVKTQNLDEGDKVASIAVIPGAEIEEEVE 803


>gi|220903292|ref|YP_002478604.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 855

 Score =  845 bits (2184), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/902 (39%), Positives = 534/902 (59%), Gaps = 91/902 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +SI  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++   +N+ + K ARI
Sbjct: 8   QISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARI 67

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD PAA RYTE R+ +
Sbjct: 68  VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRYTEVRMSR 127

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L DL K+TVDFRPNYD + QEP V+ ++ PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 128 LAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNIPPHNLGE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           + D    ++D+P   +D LME ++GPDFPT   +    G+ +AY TGRG++ +RG   IE
Sbjct: 188 LCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGKGLYDAYHTGRGTVKVRGRMEIE 247

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 + IV+ EIPY +NK++++EKIA LV +++I  I DLRDESDR+G RVVI+LKRG
Sbjct: 248 DRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIRVVIDLKRG 307

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
              ++++N LY++T L+S F +NM+A+   +P+   L   L  FV  R EVV+RRT+Y L
Sbjct: 308 TIPEIVINALYKFTPLESSFGINMLAVVDNRPQLLNLKSALTCFVDHRREVVIRRTRYDL 367

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL +A+ N+DEVV +IR S +P+ AR  LM+R                 
Sbjct: 368 EKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKR----------------- 410

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE+Q +AILE+RL RLTGL R+++  E   L  +I+    IL +   L
Sbjct: 411 ---------FELSELQAKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVL 461

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G +K+E+  +++   TPRRT ++     D++ ED I  ED+V+T+S  GY+KR  L  Y
Sbjct: 462 RGELKREIREIRETFATPRRTEVLREALTDIDIEDLIPDEDVVITLSRRGYMKRTGLENY 521

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P GS  A+G 
Sbjct: 522 QQQKRGGKGIAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGV 581

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L  GE +TT++   E      + Y +F TK G V+R+  S + +  ++G +A+
Sbjct: 582 HINNLLPLEDGEWVTTVLALREFA---EDKYFLFVTKRGMVKRSSASLYARCRKTGLMAV 638

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V     ++ I+L T  G  +RF    +R   GR + GV+GI+L + D V+
Sbjct: 639 GLREDDELVVVRPIRNDSHIVLATADGIAIRFSCKDVRPM-GRVATGVKGIALRRQDFVV 697

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  IV   D   +                                               
Sbjct: 698 AGVIVKETDQTTE----------------------------------------------- 710

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              I+++S  GFGKRTS   +R+ +R GKGI    V+   + G +V   PV D+D +IL+
Sbjct: 711 ---IMSISANGFGKRTSIELYRLQSRGGKGIINFKVT--GKTGPVVGAMPVRDDDSLILL 765

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--------SEIVDEAES 908
           +    ++R+ ++E+R   RAT GV++    +   VV  +R+ E        SE +DE   
Sbjct: 766 TSANKIVRIGLDEVRSKGRATMGVMLVRLDEGAHVVGFDRVDEGGQTGRDLSEDMDEDAV 825

Query: 909 TE 910
            E
Sbjct: 826 PE 827


>gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 857

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/891 (39%), Positives = 531/891 (59%), Gaps = 83/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E ++     ++I  E++ SYL Y+++VI+GRAIPD RDGLKPVHRRI+F   ++   +N+
Sbjct: 3   EAQDGQHPQINIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++A+YDAL R+AQ++S+R  L++GQGNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A   L DL K+TVDFRPNYD + QEP V+  + PN+L+NG  GIAVGMATN
Sbjct: 123 YTEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE+ D    ++DNP   +D LME ++GPDFPT   +    G+ +AY TGRG++ 
Sbjct: 183 IPPHNLGELCDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGKGLYDAYHTGRGTVK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+     + +V+ EIP+ +NK++++EKIA LV +++I  IADLRDESDR+G R
Sbjct: 243 MRGRVEIEERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+LKRG   D+++N LY++T L+S F +NM+A+   +P   TL   L  FV  R EVV
Sbjct: 303 IVIDLKRGVIPDIVVNALYKFTPLESSFGINMLAVVDNRPVLLTLKSALSCFVDHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT+Y L KA  RAH+L GL IA+ ++D+VV +IR S NPE AR+ LM           
Sbjct: 363 IRRTRYDLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMA---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q RAIL++RL RLTGL R+++  E   L  +I+    
Sbjct: 413 ----------------TFELSEIQARAILDMRLQRLTGLQREELLAEYKDLLQKIEFYKS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           +L +   L   +K+E+  +++   TPRRT ++      ++ ED I  +++V+T+S  GY+
Sbjct: 457 VLDNSEVLRSEMKREIREIRETFVTPRRTEVLTEALGGIDIEDLIPDDEVVITLSRRGYM 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+ Q+RGGKG + +   D+D+V +    + H  +  F++ G +++ KV ++P 
Sbjct: 517 KRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  A+G  + N+L L +GE +TT++   E      + Y +F T+ G V+R+  S + + 
Sbjct: 577 GSRTAKGVHINNLLPLEEGEWVTTVLALREFA---EDKYFLFVTRRGMVKRSSASLYARC 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++G +A+ L   DE++ V    ++N I+L T  G  +RF    IR   GR + GV+GI+
Sbjct: 634 RKTGLMAVGLREDDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPM-GRVATGVKGIA 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V++  ++   D   +                                       
Sbjct: 693 LRRQDSVVAGVVLKDVDQTTE--------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      I+++S  G+GKRT    +R+ +R GKGI    V+   + G +V   PV 
Sbjct: 714 -----------IMSISANGYGKRTRVDLYRLQSRGGKGIINFKVTA--KTGPVVGAMPVR 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           DND +IL++    ++R+ V+E+R   RAT GV++    +  RVV  +R+ E
Sbjct: 761 DNDGLILLTSANKIVRIGVDEVRSKGRATMGVMLVRLDEGARVVGFDRVDE 811



 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 57/266 (21%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            ++  V+  ++ G ++R  L ++ Q  R   G  A+     D +    T T    + L T
Sbjct: 502 PDDEVVITLSRRGYMKRTNLENYQQQKRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFT 561

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+  +  +  +     R + GV                                    
Sbjct: 562 NKGRMHQLKVHQV-PEGSRTAKGV------------------------------------ 584

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                        +          ++         ++++ L V+ +G  KR+S+  +   
Sbjct: 585 -----------HINNLLPLEEGEWVTTVLALREFAEDKYFLFVTRRGMVKRSSASLY--- 630

Query: 821 NRSGK-GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            R  K G+ A  + +      LV V P+ +++ I+L +  G  IR    +IR   R   G
Sbjct: 631 ARCRKTGLMAVGLRE---DDELVVVRPIREDNHIVLATADGFAIRFSCGDIRPMGRVATG 687

Query: 880 VVIFSTAKDERVVSVERIRESEIVDE 905
           V   +  + + VV+   +++ +   E
Sbjct: 688 VKGIALRRQDSVVAGVVLKDVDQTTE 713


>gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
 gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P]
          Length = 848

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/898 (41%), Positives = 553/898 (61%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I ++M+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++    Y
Sbjct: 3   EGEKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ ++YD++ RMAQ WS+R ++++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+QK +  +L D+ KDTVD R N+D +  EPVVL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G +A IDN +ID+D LM+ I  PDFPTG +I G  G+K+A+ TGRG IV+R
Sbjct: 183 PHNLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIYGYDGVKDAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE+    RE I+V+EIPYQVNKA M++K AELV EK+I  I+++RDESDR G R+V
Sbjct: 243 AKSVIEEVK-GRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT LQ+ FSVN +AL   +PE+  L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGRPEQLNLKQLIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA  RAH+L GL IA  N+DEV+  IR S N + AR +L+ R           
Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E +++   I +  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R   IIK EL  +KD+    RR+ I     DM  ED I    +VVT+S+ GY+KR 
Sbjct: 456 ANEPRRYEIIKGELAHIKDKYGDDRRSVIEYAGGDMSIEDMIPDTKVVVTISNAGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG+G+ G   R+EDF+  LF+ + H  ++FF+  G V+  +V+ +P G  
Sbjct: 516 NLEEYKVQNRGGRGQKGATTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEGGK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +G+A+ N++++ Q +++   +   +  DE+  N+ YV+ ATK G V++  L  + +  
Sbjct: 576 NTKGRAMQNLINIEQDDKVKAFLVTQDLKDEAYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L  K G+ +RF  +  R   GR + GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLEAKLTTGDSQVMLALKSGKSIRFEEAKTRPM-GRTASGVRGITL 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+VI M  V   +++                                         
Sbjct: 695 QHDKDEVIGMVAVNDMESN----------------------------------------- 713

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL VSEKGFGKR+   D+RI+NR GKG++  ++S+  + G LVA+  V+
Sbjct: 714 -----------ILVVSEKGFGKRSKLEDYRITNRGGKGVKTLNISE--KTGNLVAIKNVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D++ +++++  G  IR+ V ++R+  RAT+GV + +   ++ + +V ++   E V E 
Sbjct: 761 DSNDLMIINRSGLTIRMAVEDLRVMGRATQGVRLINIKDNDSIAAVAKVAHEEEVPED 818



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 98/253 (38%), Gaps = 13/253 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+  L  Y   R  G   + + +++ D + +  + +  + V+
Sbjct: 606 EAYINSHYVIMATKKGQVKKTSLEQYSRPRTNG--INAITIKEGDELLEAKLTTGDSQVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +   +      P  R  + +  ++L   +     M    D  S     ++ 
Sbjct: 664 LALKSGKSIR---FEEAKTRPMGRTASGVRGITLQHDKDEVIGMVAVNDMESN----ILV 716

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVR 707
            ++ G  +R+KL D+        G   + +  +   L       + ND+++  + G  +R
Sbjct: 717 VSEKGFGKRSKLEDYRITNRGGKGVKTLNISEKTGNLVAIKNVDDSNDLMIINRSGLTIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +RV  GR + GVR I++   D + ++A V H +   ++    ++  +      S 
Sbjct: 777 MAVEDLRVM-GRATQGVRLINIKDNDSIAAVAKVAHEEEVPEDLDAQVEDGTEIENDASE 835

Query: 768 DTEEITSLKNDSS 780
           +  +      ++ 
Sbjct: 836 NESDEQDGNENNE 848


>gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 815

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b]
 gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b]
          Length = 855

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/891 (41%), Positives = 555/891 (62%), Gaps = 82/891 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K ARI
Sbjct: 42  NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARI 101

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE R+ K
Sbjct: 102 VGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAK 161

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               LL+D+ KDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 162 ITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVDG +A+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G   +E
Sbjct: 222 VVDGIIALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEVE 281

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +   +E I+VTE+PYQVNKA ++EKIA+LVR+K+I  I+DLRDE+DR G R+VIELK+G
Sbjct: 282 TSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKKG 341

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +++ILN LY++T LQ+ F V M+AL    P    L  IL+ ++  R EV+ RRT++ L
Sbjct: 342 EESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQILQKYLEHRFEVITRRTEFEL 401

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +                 
Sbjct: 402 KKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIAK----------------- 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q +AIL++RL RLTGL RD I  E N L + I+E   ILS  S++
Sbjct: 445 ---------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKI 495

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +  YR
Sbjct: 496 YGIIKEEGLKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGG G +     ++D V D++I     ++L F++ G V+  KV+ +P    QARGK 
Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NI++L+  E+++TI+   E E    N  + F T++G V++++L+ F  I ++GK A++
Sbjct: 616 IGNIINLDDDEKVSTIIKVREFE---KNKNLFFVTRNGVVKKSELTLFDNIKKAGKRAIR 672

Query: 678 LDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           L+  DE++ +     + E++I   TK G  +RF    +R   G  + GVRGI+L   D++
Sbjct: 673 LNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSM-GTGAAGVRGINLRDEDKI 731

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +  AI+                                                  E+  
Sbjct: 732 VGAAIISS------------------------------------------------EMNK 743

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  ILT++E+G+GKRT   ++R+++R GKGI    +++  + G +V V  V D+D+I+L
Sbjct: 744 DDARILTITEEGYGKRTKLLEYRLTSRGGKGIINAKLNE--KTGKIVDVKIVKDDDEIML 801

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++ +GTLIR  V ++ +  R+  GV I     +E++ S+ +I E   +D+ 
Sbjct: 802 ITSEGTLIRTSVKDVSVIGRSATGVRIMKVRNNEKIASIVKITEEPKLDDE 852


>gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
 gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 815

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23]
 gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23]
          Length = 843

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/893 (40%), Positives = 537/893 (60%), Gaps = 85/893 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM +     + Y
Sbjct: 6   DNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 66  KKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL K+TVD  PN+D S +EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 126 ECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATNMP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+DGC A IDNPDID + LM+ I GPDFPTGA I G  G+K+AY TGRG IV+R
Sbjct: 186 THNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIYGLQGVKDAYETGRGRIVMR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA ++  IA+L  + +I  +A++ DES RQG R+V
Sbjct: 246 AKAEIESGDT-HDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGMRIV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           ++ KR A+A+V+LN+L++ T+LQS FSVN +AL   +P   +L   +K FV  R +V +R
Sbjct: 305 VDCKRDANANVLLNKLFKMTALQSSFSVNNIALVKGRPRLLSLKECVKYFVEHRHDVTIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA++RAH+L GL IAV N+DEVV IIR S  P  A+R L  R           
Sbjct: 365 RTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEAR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L E+Q++AI+++RLA+LTGL  D +  E + L   I E  +IL
Sbjct: 414 ---------------FELDELQSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +  R   ++K +L  VK++    RRT I+    +   ED    + +V+T+SH+GY+KR 
Sbjct: 459 DNPERCKEVMKADLQEVKEKYGDERRTEIIPFDHEFNAEDFYPDDPVVITISHMGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PLS +  Q RGG G      RD DF   ++  + H ++LFF+  G  Y +K + +P G  
Sbjct: 519 PLSEFHEQGRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDK 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDES--SWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L++   + I  ++           N+ YVVFATK G +++  L  + +  
Sbjct: 579 NSKGRAIQNMLNIEPDDAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAYSRPR 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ ++  D+++ V      N++LL  + G+ VRF  + +RV  GR S GV G+ L
Sbjct: 639 ANGVIAININEGDQVVGVRLTNGHNELLLANRNGRAVRFDENDVRVM-GRVSTGVIGMRL 697

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             G D+V+ M  V   +                                           
Sbjct: 698 DGGDDEVVGMVCVNDPNT------------------------------------------ 715

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + I+ VSE G+GKR+   D+R ++R  KG++   +++  + G LVA+  V 
Sbjct: 716 ---------ETIMVVSENGYGKRSEVEDYRKTSRGAKGVKTLSITE--KTGRLVAIKVVT 764

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRES 900
           D + +++++  G LIR+ V ++R+  RAT+GV + +   K++ + SV ++  S
Sbjct: 765 DENDLMIINKSGVLIRLKVADVRVMGRATQGVRLINLTKKNDSIASVCKVMHS 817


>gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
 gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           ATCC 55195]
          Length = 815

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 824

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/907 (40%), Positives = 550/907 (60%), Gaps = 92/907 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +         + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   EPNVFDKFNEIDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY +L  MAQ+WS+R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  +L D+ KDTVDF PN+D + +EP V+ ARYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKIAMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HNL EV++  V +I+N     +  +D +++I++GPDFPTGA ILG  GI++AY TG
Sbjct: 182 NIPPHNLSEVINAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIKGIRDAYTTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R VS IE     + +IVVTE+PY VNKA ++EKIAELV++K++  I DLRDES+
Sbjct: 242 RGKIKVRAVSEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESN 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G RVVIEL+R  +A+VILN+LY++T LQ  F VNM+AL   +P+   ++ +L+ ++A 
Sbjct: 302 REGMRVVIELRRDVNANVILNRLYKHTQLQETFGVNMLALVNNQPKVLNILQMLEYYLAH 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +E+VV RRTKY LNKA++RAH+L GL IA+ N+DE+++IIR S N   A+ EL++R    
Sbjct: 362 QEDVVTRRTKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKR---- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+VQ +AI+++RL  LTGL R+ +  E N L  +I
Sbjct: 418 ----------------------FGLSDVQAQAIVDMRLRALTGLERERLEAEYNELLSKI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +    IL+   +LLG+IK+E+L V+ +    RRT  ++     + ED I +ED+++ ++ 
Sbjct: 456 EYFESILADNKKLLGVIKEEILIVEGKYKDDRRTGFIQDDEMED-EDLIQKEDIIIAMTK 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           LGY+KR+    +  Q RGGKG  G+   D+DF+ D+ + +TH  + FF++ G VY  K +
Sbjct: 515 LGYIKRMSPDNFNVQNRGGKGIKGMQTIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P  S  ARG A++N+L L   E+I+ I+P    E+S    Y+   TK G +++ +++ 
Sbjct: 575 KIPEASRTARGIAIVNLLQLQPDEKISAIIP---SEASSGEGYLFMVTKKGTIKKCRINL 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I ++G  A+ L   DE++ V+    ++D+++ +K G C+R     IR   GR + GV
Sbjct: 632 FDNIRKNGLAAINLTEDDELIEVKVTHGDDDLIIVSKYGMCIRINDKDIRAM-GRGATGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L + D+VI M +    +                                       
Sbjct: 691 RGMRLNEADEVIGMQLASQGE--------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                         ++L VSE G+GKRT   +F++ NR GKGI        ++ G LV  
Sbjct: 712 --------------YLLLVSEYGYGKRTKISEFKVQNRGGKGIICYK--DNDKTGKLVGA 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEI 902
             VN++ +I+L++ +G +IR+ V+ I +  RA  GV + +     D ++ S+ ++RE + 
Sbjct: 756 KLVNEDREILLITTEGIIIRIEVSGISVLGRAATGVKLMNIDRESDTKIASIAKVREEKN 815

Query: 903 VDEAEST 909
            +  E +
Sbjct: 816 TESVEES 822


>gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
 gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B]
          Length = 815

 Score =  845 bits (2183), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 815

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
 gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1]
 gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners
           DSM 13335]
          Length = 815

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/898 (39%), Positives = 548/898 (61%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  ++I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++ T+V++ N  G LV V  
Sbjct: 709 ----------NSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTTNVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
 gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c]
 gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D]
          Length = 815

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
 gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100]
          Length = 827

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/901 (43%), Positives = 545/901 (60%), Gaps = 86/901 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + +EEKG+T V I+ EM+ +YL Y+++VI+GRA+PD+RDGLKPVHRR+LF   +M    
Sbjct: 2   ENNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRH 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y+K AR+ G+V+GKYHPHG+A++YD + RMAQD+SLR  L +GQGNFGS+DGD PAA
Sbjct: 62  NRPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  LL+DL K+TV F PNYD S   P VL +++PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DGC+ +I NPD  ++ LM+ I+GPDFPT  VI GR GI  AY  GRG 
Sbjct: 182 TNIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIAGREGILQAYKKGRGI 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + I+ V+ I +   DRE+I++TEIPYQVNKA ++E +A+LVR+K+I  I+D+RDES R+G
Sbjct: 242 VTIKAVAEIVQVK-DREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
            R+V+ LKRG +A VILN+LY+YT +Q+ F + M+AL+   +P  F L G+L+AFV  R 
Sbjct: 301 MRIVVVLKRGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHRR 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV +R  + L KA++RAH+L GL  A+ +++EV++ IR S     AR  LM +      
Sbjct: 361 DVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSK------ 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  SE Q  AILE+RL RLTGL RD I  EL  L  +I  
Sbjct: 415 --------------------FEFSERQAVAILEMRLQRLTGLERDKIVAELAELMKQIDW 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +LS    +  II  EL  VK     PRRT+I   L D+EDED I  E MVVTV++ G
Sbjct: 455 LKFVLSDVREIYKIIVSELEDVKKRYADPRRTQITGDLSDLEDEDLIADEQMVVTVTNTG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +KR+P+  YR Q+RGGKG  G+  ++ED+VTD+F  ST T +L F+  G VY  KV RL
Sbjct: 515 LIKRIPVEEYRVQKRGGKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRL 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+G+  ++GK+L N++ L+ GE +  I+P  E      N Y V  T+ G +++  L  F 
Sbjct: 575 PLGTRTSKGKSLANVVQLSNGESVRAILPVNEFS---ENKYAVMLTEKGVIKKTSLDAFA 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
               +G IA+  D  D ++ V+    ++DI + TK G  +RF  + +R   GR + GV+ 
Sbjct: 632 NPRTAGIIALTTDLDDGVIDVKISDGQSDIFIATKEGMSIRFNEADVREM-GRTARGVKA 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+LAK D V++M ++     D                                       
Sbjct: 691 ITLAKDDVVVAMEVLEKNTKDT-------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL V+ KG+GKR+ + ++RI +R G GI     +  +++G ++    
Sbjct: 713 -------------ILMVTSKGYGKRSETGEYRIQSRGGVGIITQKTT--DKVGLVIGTKK 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDE 905
           V DN ++IL +DKG +IR+ V +I +  R T+GV + +  + DE V  V  + E E   E
Sbjct: 758 VADNMELILSTDKGQVIRMKVTDISVLGRNTQGVRLINIDEKDETVTGVAVVAEDETATE 817

Query: 906 A 906
            
Sbjct: 818 E 818


>gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
          Length = 843

 Score =  845 bits (2182), Expect = 0.0,   Method: Composition-based stats.
 Identities = 390/900 (43%), Positives = 558/900 (62%), Gaps = 68/900 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K IT ++I +E+ +SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +G  WN+
Sbjct: 2   NDFAKEITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ + +R  L++GQGNFGSVDGDP AA R
Sbjct: 62  NYKKSARVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ LL DL K+TVD+  NYDG+   P +L AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEVRMSKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A IDN DI ++ LM+ I GPDFPT A+I    G+K AY+TGRG I 
Sbjct: 182 IPPHNLSEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDSGGLKEAYSTGRGKIY 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  S IE      RE IV+ EIPYQVNKA +LEKIAEL + KRI  I +LRDESD+ G 
Sbjct: 242 IRARSEIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A ++VILN LY  TSLQ+ F +NMVAL+  +P+  +L  IL AFV  R  V
Sbjct: 302 RIVVEIKRDAISEVILNNLYSLTSLQTSFGINMVALHQGQPKIMSLKDILSAFVCHRRAV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR  + L KAR R H+L GLAIA+ N+D V+++IR S +   A   L+  SWN  ++ 
Sbjct: 362 VIRRVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVF 421

Query: 429 DLIDLI--------DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           D+                     +    L++ Q +AIL+L+L +LT L  + +  E +SL
Sbjct: 422 DMKQRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IK  + IL     L+ +I+QELL +++E +  RRT I   + ++  E+ I ++D+VV
Sbjct: 482 LEKIKNLISILKDPKCLMRVIRQELLMIQEEYNDSRRTEISSNIENINVENLINQKDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y 
Sbjct: 542 TLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNYGRIYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP  S  +RGK +IN+L L+  ERIT I+P     +      V  AT  G V++ 
Sbjct: 602 MKVYRLPAASRGSRGKPIINLLPLDVNERITAILPIQNYTTGHQ---VFMATSSGVVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F +    G IA+ L+  DE++  +     N+++L T  G+ VRF  + +R   GR+
Sbjct: 659 PLTEFSRPRNVGIIALNLNDGDELIGADVTDGSNEVMLFTAYGKVVRFKETQVRSV-GRS 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           ++GV+GI L +GD+V+S+ I     +                                  
Sbjct: 718 AIGVKGIHLLQGDRVVSLIIPKDKSS---------------------------------- 743

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILTV+  GFGKRT+  ++ I +R+ +G+ +  V++ N  G 
Sbjct: 744 -------------------ILTVTRNGFGKRTNQSEYPIKSRATQGVISIKVTERN--GN 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++    VN +DQI++++D G L+R  V+E+ I  R T+GV++  TA +E VV ++ + ES
Sbjct: 783 VIGAVQVNQSDQIVMITDLGRLVRTRVSEVNIIRRNTQGVMLIRTACNECVVGLQCVVES 842


>gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265]
 gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265]
          Length = 827

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/898 (41%), Positives = 540/898 (60%), Gaps = 85/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  V+I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRQRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG++A+YD+L RM QD+SLR  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K+TV++  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG  A+IDNPDI+++ LM+ +  PDFPTG +I G  G++ AY TGRG +VIR
Sbjct: 182 PQNLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIYGYEGVRLAYTTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE IVVTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMQFYIQHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R          
Sbjct: 362 RRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E       I+E  DI
Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYAETIALIEELRDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+S  R + II+ ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LASPERQMQIIRTELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   +++DF+  +F+ STH  +LFF+S G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG++L NI+ LN GE I T +     +      +++ AT  G V++  L +F +  R
Sbjct: 576 RAARGRSLANIMELNPGETIKTYINIRNFD---EPGFIMMATADGIVKKTALEEFSRPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D+ D +L       ++ ++L    G  VRFP S +R   GR ++GV+GI+L 
Sbjct: 633 NGIAAITIDTGDALLDARLTDGDHQVILAKSSGLVVRFPESQVRPM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 RGEKCISMVTTKRLDTA------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  +IGALV +  VND+
Sbjct: 709 ---------LLAVTDNGFGKRSKVEDYRLTKRGARGVITLKAHE--KIGALVGLLDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D +I+++  G + R  V++IRI  R T GV +    + + V ++ R+ +++   + E+
Sbjct: 758 DDLIIITSHGIVNRQHVSDIRITGRNTSGVRLVRLMEGDAVSALARVPKTDEDTDTET 815


>gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 820

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/905 (39%), Positives = 540/905 (59%), Gaps = 86/905 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY TG+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE+    ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPENA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFKESDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L + D V+   ++                                           
Sbjct: 691 RGINLRENDYVVGSGVL------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      K+  +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 708 ----------GKDDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+    I++++  G +IR    ++    R+T GV +     D +V S+  +      +
Sbjct: 756 IVVDKGKDIMVITTNGIMIRFKTKDVSQTGRSTMGVRLIKVNDDSKVASLTIVPTEAEQN 815

Query: 905 EAEST 909
           + +  
Sbjct: 816 QTDDD 820


>gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
 gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084]
          Length = 929

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/874 (42%), Positives = 535/874 (61%), Gaps = 85/874 (9%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
            EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  NK + K A   GEV+
Sbjct: 90  HEMEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVI 149

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG++A+YDA+ R+AQ +S+R  L++G GNFG++DGD  AA RYTE RL + A  L
Sbjct: 150 GKYHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMEL 209

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L DL KDT+D++ NYD S QEPVVL AR+PN+LVNG  GIAVGMATNIP HNL E +   
Sbjct: 210 LRDLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAV 269

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
             +IDNPD  +D LM ++ GPDFPTGAVI+G  GI+ AY TGRG I IR  +H+E T   
Sbjct: 270 CMLIDNPDATVDDLMTVMPGPDFPTGAVIMGSEGIRQAYETGRGIITIRAKAHVESTKTG 329

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           R ++V TE PY VNK  + EKIA+LV EKR+  I+D+RDES+R+G R+VIELK+GA  +V
Sbjct: 330 RNKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAIPEV 389

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +LN LY+Y++LQS F +  +AL    P   TL  +L+ ++  + +VV RRT++ L KAR 
Sbjct: 390 VLNNLYKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKARA 449

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RAH+L GL +A+ ++DEV+ IIR S     A   L++R                      
Sbjct: 450 RAHILEGLLLALDHIDEVISIIRSSRTDTQASERLIER---------------------- 487

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                  ++ QT AILE+RL RLTGL RD I+ EL+ L   I+   D+L+   ++L +IK
Sbjct: 488 ----FGFTKQQTTAILEMRLRRLTGLERDKIQEELDGLRRAIEYYEDLLADSRKILEVIK 543

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            E+  + ++    RRT I +  + ++ ED I  EDMVVTV+H GYVKR+P++ YR+Q+RG
Sbjct: 544 SEMSEIGEKYGDKRRTTISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRG 603

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG  G+ ++D DFV DLF+ STH  V+FF++ G VY+ KV  LPIGS  ARG AL+N+L
Sbjct: 604 GKGVQGLSLKDNDFVEDLFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVL 663

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L +GE  T ++   E      + Y++FAT +G V++  +SD+ +  R G IA+ L   D
Sbjct: 664 PLGEGEHPTAVITTREFP---ADEYLMFATANGMVKKTAMSDYDKSRRDGIIAINLKRDD 720

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++V        ++L +++G+ + F  S +R   GR++ GVRGI+L    +++ M I  
Sbjct: 721 ELVNVRRVKPGQKVILCSEVGKAILFDESEVRP-TGRDTSGVRGITLKDDVKMLGMEITN 779

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                                                    +L 
Sbjct: 780 GNGD-----------------------------------------------------LLV 786

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++E+G+GKRT  +++    R G+G+    ++  ++ G LVA   V    ++++VS++G +
Sbjct: 787 MTERGYGKRTPVFEYPEHKRGGQGVATIAMT--SKKGNLVACRVVGPQHELMIVSEEGVV 844

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           IRV   +I    RAT+GV I +  ++++V +V R
Sbjct: 845 IRVKTADISKLGRATQGVKIMNMGENDKVSAVAR 878



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 113/307 (36%), Gaps = 29/307 (9%)

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              +  ++   I+ L     +   +   E    + +  V   T+     R +     +  
Sbjct: 395 YKYSALQSSFGIIDLALVNGVPRTLTLREMLQHYIDHQVDVVTR-----RTRFD-LAKAR 448

Query: 670 RSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRF-----PISAIRVFAGRN 720
               I     + LD  DE++S+   ++ +            RF       +AI     R 
Sbjct: 449 ARAHILEGLLLALDHIDEVISIIRSSRTD---TQASERLIERFGFTKQQTTAILEMRLRR 505

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             G+    + +      +  +  A   Y++ +   + +    +    +  E    K  ++
Sbjct: 506 LTGLERDKIQEE-----LDGLRRAIEYYEDLLADSRKILEVIKSEMSEIGEKYGDKRRTT 560

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +         ++L  +E  ++TV+  G+ KR     +R   R GKG++   +   + +  
Sbjct: 561 ISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVED 620

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897
           L   F  + +D ++  +++G + RV V+E+ I SR  +G  + +     + E   +V   
Sbjct: 621 L---FVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITT 677

Query: 898 RESEIVD 904
           RE    +
Sbjct: 678 REFPADE 684



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/439 (13%), Positives = 159/439 (36%), Gaps = 43/439 (9%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + +  L+  R        L   +A+  +++ +I+   +    +    +R+  +     L 
Sbjct: 513 KIQEELDGLRRAIEYYEDL---LADSRKILEVIKSEMSEIGEKYGDKRRTTISDAPVVL- 568

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                    + ++  M ++      +  L +A      R     +  SL          +
Sbjct: 569 -----DVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVEDLFV 623

Query: 492 SSRSRLLGIIKQELLSVKDELD-------TPRRTRIVEGLLDMEDEDC--------IVRE 536
           +S    +          + ++          R + +V  L   E E             +
Sbjct: 624 ASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITTREFPAD 683

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           + ++  +  G VK+  +S Y   RR G     + ++ +D + ++  V     V+  S +G
Sbjct: 684 EYLMFATANGMVKKTAMSDYDKSRRDG--IIAINLKRDDELVNVRRVKPGQKVILCSEVG 741

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              K  ++      P  R  + +  ++L    ++  +      E +  N  ++  T+ G 
Sbjct: 742 ---KAILFDESEVRPTGRDTSGVRGITLKDDVKMLGM------EITNGNGDLLVMTERGY 792

Query: 657 VRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            +R  + ++ +  R G+    IAM     + +++      ++++++ ++ G  +R   + 
Sbjct: 793 GKRTPVFEYPEHKRGGQGVATIAMTSKKGN-LVACRVVGPQHELMIVSEEGVVIRVKTAD 851

Query: 713 IRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           I    GR + GV+ +++ + D+V  ++  +     A     +     +SA     + D +
Sbjct: 852 I-SKLGRATQGVKIMNMGENDKVSAVARMVAHKKKAAKANPMQRSLDLSAAGARDASDED 910

Query: 771 EITSLKNDSSVEGNISEER 789
            +     +   +  + ++ 
Sbjct: 911 PVDIGDEEELDDSLLEDDE 929


>gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183]
 gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183]
          Length = 839

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/917 (37%), Positives = 502/917 (54%), Gaps = 94/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE          + I  V I  E+Q SYL YA++VI+ RA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTEVTTGGSGP-GERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KCAR+ G+VMG YHPHG++AIYD L R+AQ W++R  L++G GNFGS 
Sbjct: 60  YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  +L D+ K+TVDF PNYDG   EP VL AR+PN+LVNG  
Sbjct: 120 GNDPAAAMRYTECRLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    +DN  +  + L++     I+GPDFPT A+I+GR G
Sbjct: 180 GIAVGMATNIPPHNLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIVGRKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE+    R  +VVTE+PYQVN   +  KIAELV+E ++  I
Sbjct: 240 IEDAYRTGRGSITMRAVVEIEEIQ-GRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LK+ A A V+LN LY++T LQ  F  NM+AL    P    L 
Sbjct: 299 ADVRDETSGRTGQRLVIVLKKDAIAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +V  + +V+VRRT++LL KA +RAH+L  L  A+  ++EV+ +IR S + + A+ 
Sbjct: 359 QFIRYWVDHQIDVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + EVQ +AIL+++L +L  L R  I +
Sbjct: 419 GLMA--------------------------LLQIDEVQAQAILDMQLRKLAALERQAITD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  EI +  +IL+S  R   I+++EL  + +     RRT+IV    D+  ED I  
Sbjct: 453 EYERLMAEIADFNEILASPERQRRIVREELEPIVERYGDERRTQIVPFDGDVSYEDLIPE 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YR Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ 
Sbjct: 513 EDIVVTITRGGYAKRTRVDAYREQKRGGKGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNK 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   +RG+ + N+L+    E I  ++   + +      Y+V AT+ G
Sbjct: 573 GRVYRAKAYELPEGGRDSRGQHVANMLAFQPEEHIAEVLDLRDYDV---APYLVLATRQG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++  L DF      G IA+ L   DE+++       +D+LL     Q +RF      +
Sbjct: 630 KVKKTALKDFDSPRTGGIIAINLAEGDEVIAARLVFPTDDLLLVGTNAQAIRFHADDEQL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+    G  ++ M ++   D D                          
Sbjct: 690 RPM-GRATSGVIGMRFDTG-HLLDMHVIRDGDED-------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +L  +E G+ KRT    + +  R GKG+    + 
Sbjct: 722 --------------------------VLVATEGGYAKRTPVEQYPVQGRGGKGVLTAKIV 755

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V   D +  ++  G +IR    EI+ + R T GV + + A+ + VV+
Sbjct: 756 QA--RGKLVGALMVRPEDGVFAMTSNGGVIRTNAGEIKRSGRQTMGVRLMNLAEGDSVVA 813

Query: 894 VERIRESEIVDEAESTE 910
           + R  ES + +E E+ +
Sbjct: 814 IARNVESSMEEEPEAGD 830


>gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
 gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202]
          Length = 865

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/918 (37%), Positives = 538/918 (58%), Gaps = 69/918 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S +    E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I NP I+   L EII+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  + TG+GSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK+
Sbjct: 241 IRETFKTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVEGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +
Sbjct: 361 SLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSIS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS +Q+ AIL+++L RLT L  D 
Sbjct: 421 AREKL--------------------------QNEHKLSSIQSDAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ E N L  +I     IL+S+ R+  II +EL  +  +  +PR+T I++    ++D D 
Sbjct: 455 IKEEHNELTRKINFYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  +  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L F
Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++         ++ Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFV---DDRYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +K G  + F   I
Sbjct: 632 KAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDI 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L +GD ++SM ++     D   +I  +               
Sbjct: 692 NELRPL-GRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT-------------- 736

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           ++  +E      ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 737 -------------EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  + + ++++LV++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDH 841

Query: 891 VVSVERIRESEIVDEAES 908
           +  V  +   +I ++ ++
Sbjct: 842 LSEVVLVPREQIEEKDQN 859


>gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4]
 gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4]
          Length = 856

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/891 (38%), Positives = 534/891 (59%), Gaps = 83/891 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+ + K AR
Sbjct: 24  QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 83

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+YDA+ RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 84  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 143

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   + D+ K+TVDFRPNYD +  EPVVL  R PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 144 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 203

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ +  + ++D+    +D LM+ ++GPDFPTG  +    G+ +AY TGRG++ +RG   I
Sbjct: 204 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEI 263

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+     + IV+ EIPY +NK++++EKIA LV E+RI  +ADLRDESDR+G RVVI+LKR
Sbjct: 264 EERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKR 323

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D+++N LY+YT L+S + +NM+A+   +P+   L   L  F+  R E+++RRT+Y 
Sbjct: 324 GTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYD 383

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LMQR                
Sbjct: 384 LRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR---------------- 427

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q++AIL++RL RLT L  + + +E   L  +I+    IL +   
Sbjct: 428 ----------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEV 477

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  ++++E   ++D   T RRT ++      +  ED I  +D+V+T+S  GY+KR  L  
Sbjct: 478 LRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDN 537

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +G+   D+DFV +    + H  +L F++ G +++ KV ++  GS  A+G
Sbjct: 538 YQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKG 597

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N+L L + E +TT++   E      + + +F TK G V+R+  S + +  + G IA
Sbjct: 598 VHIANLLPLEKDEWVTTVLSVREFA---EDRFFLFVTKRGMVKRSSASLYARARKGGLIA 654

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     ++ ++LTT  G  +RF    +R   GR++ GV+G++L+  D+V
Sbjct: 655 VGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDRV 713

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++ A++   D   +                                              
Sbjct: 714 VACAVLPGDDTSTE---------------------------------------------- 727

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I+++S  G+GKRT    +R+ +R GKG++   V+   + G ++   PV D++ ++L
Sbjct: 728 ----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALVL 781

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++    +IR+ V+E+R   RAT GV++    +   VV  +R+ E E+V+E+
Sbjct: 782 LTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEES 832



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 136/421 (32%), Gaps = 25/421 (5%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL K      +L  + +    + E    IR +     A +   +   + 
Sbjct: 450 EHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTY----ATKRRTEVLMDE 505

Query: 425 SDIKDLIDLIDDSS-----YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +   + DLI D          G      L   Q +      +A L     D ++  L +
Sbjct: 506 LEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTT 565

Query: 480 LGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
              +            +L    + +   + K            +  +          ED 
Sbjct: 566 TNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDR 625

Query: 539 VVT-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V+  G VKR   S+Y   R+GG     V +RD+D +  +  +     V+  +  G 
Sbjct: 626 FFLFVTKRGMVKRSSASLYARARKGG--LIAVGLRDDDELIMVREIHNDDHVVLTTGGGM 683

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +   +  P   P  R    +  ++L+  +R+      P D++S     ++  + +G  
Sbjct: 684 AIR---FACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTE---IMSISSNGYG 737

Query: 658 RRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +R ++  +              +   + D ++       +  ++L T   + +R  +  +
Sbjct: 738 KRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALVLLTSTNKIIRMSVDEV 796

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR ++GV  + L +G  V+    V   +   +                   TE   
Sbjct: 797 RSV-GRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSEQKTAPEGGDAGTEGTA 855

Query: 774 S 774
            
Sbjct: 856 G 856


>gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
 gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185]
          Length = 931

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/918 (38%), Positives = 522/918 (56%), Gaps = 85/918 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E   +        +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M  
Sbjct: 58  EAQAAVAAPVAHRVDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYD 117

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ Y KC+R+ G+VMG+YHPHG++AIYDAL R+ Q WS+R  L++GQGNFGS   
Sbjct: 118 GGYRPDRGYNKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGN 177

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTECR+   A  L+ D+ ++TVDF PNYDG   +P VL +R+PN+LVNG  GI
Sbjct: 178 DGAAAPRYTECRMAPLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGI 237

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIK 238
           AVGMAT IP HNL EV D    ++ NP+      L+  +  I GPDFPTGA+I+G+ G++
Sbjct: 238 AVGMATQIPPHNLREVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKRGVE 297

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRGSI +R V ++E+    R+ +VVTE+PYQVN  A+ EKIA LV++ ++  IAD
Sbjct: 298 DAYRTGRGSITMRAVVNVEEIQ-GRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIAD 356

Query: 299 LRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDE S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    +   
Sbjct: 357 IRDETSGRTGQRLVIVLKRDAIAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPISAF 416

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++ +V  + +V+VRRT++ L++A  R H+L GL  A+  LDEV+ +IR SP  + AR  L
Sbjct: 417 IRYWVEHQIDVIVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGL 476

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++                           + + E+Q  AILE++L RL  L R  I  + 
Sbjct: 477 IE--------------------------LLDIDEIQANAILEMQLRRLAALERQRIIEQH 510

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           + L  +I +  DIL+   R   I+  EL  + ++    RR++IV    DM  ED I  ED
Sbjct: 511 DELQSKIDDYKDILAKPERQRQIVSDELAEIVEKYGDDRRSQIVPFDGDMNMEDLIPEED 570

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT++  GYVKR  +S YR+QRRGGKG  G  +R +D V   F  STH  +LFF++ G 
Sbjct: 571 VVVTITRGGYVKRTKVSEYRSQRRGGKGVRGATLRGDDVVGHFFTTSTHDWLLFFTNAGR 630

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K + LP GS  ++G+ + N+L+   GE+I  +M         ++ Y++ AT++G V
Sbjct: 631 VYRTKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVMALRTYA---DSEYLLLATRNGLV 687

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRV 715
           ++ +LS++      G IA+ L   DE++     T ++D+LL ++ GQ VRF  +   +R 
Sbjct: 688 KKTRLSEYDSPRSGGLIAVNLRDGDELVGAGLATHDDDVLLVSRKGQAVRFAATDDSLRP 747

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR++ GV G+   +GD+++SM +V     + +                          
Sbjct: 748 M-GRSTSGVTGMKFREGDELLSMNVVPKGANEVERG------------------------ 782

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                               ++  +  V E G  KRT   ++    R+  G++   +S+ 
Sbjct: 783 ------------------ADEKLCVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISER 824

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G LV    V + D++++V +KG ++R  V E+R   R T+GV   +  K + +V+V 
Sbjct: 825 --GGDLVGALVVENRDEVMVVMEKGKIVRSAVAEVRETGRNTQGVQFATPGKGDSIVAVA 882

Query: 896 RIRE---SEIVDEAESTE 910
           R  E    EI D+A  +E
Sbjct: 883 RNAEKDSEEIDDDAVVSE 900



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 99/266 (37%), Gaps = 14/266 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                + ++  +  G VK+  LS Y + R GG     V +RD D +    + +    VL 
Sbjct: 671 TYADSEYLLLATRNGLVKKTRLSEYDSPRSGG--LIAVNLRDGDELVGAGLATHDDDVLL 728

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-----DESSWNNL 646
            S  G   +          P  R  + +  +   +G+ + ++   P+     +  +   L
Sbjct: 729 VSRKGQAVRFAATD-DSLRPMGRSTSGVTGMKFREGDELLSMNVVPKGANEVERGADEKL 787

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKL 702
            V    ++G  +R  + ++    R+        +     D ++        +++++  + 
Sbjct: 788 CVFVVFENGLAKRTPVEEYPTKGRATLGVKVATISERGGD-LVGALVVENRDEVMVVMEK 846

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ VR  ++ +R   GRN+ GV+  +  KGD ++++A     D++  +    +   +   
Sbjct: 847 GKIVRSAVAEVRE-TGRNTQGVQFATPGKGDSIVAVARNAEKDSEEIDDDAVVSETNEAA 905

Query: 763 RLISGDTEEITSLKNDSSVEGNISEE 788
                 T         +    +   E
Sbjct: 906 ESTQDATHAPDDESASTENNESGDSE 931


>gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104]
 gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104]
          Length = 839

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/901 (38%), Positives = 512/901 (56%), Gaps = 92/901 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN     +  L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D ++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVR------------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 +  ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 720 ----------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 V 894
           +
Sbjct: 816 I 816



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G VK+  L+ + + R GG     + +RD D +    + S    +L  
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGG--IVAINLRDNDELVGAVLCSAEDDLLLV 675

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G   +       +  P  R  + +  +  N  + + ++             Y++ AT
Sbjct: 676 SANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDYLLSLNVVR------EGTYLLVAT 728

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  + ++    R GK  + +        ++      +++++   T  G  +R  
Sbjct: 729 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTA 788

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
              +R  AGR + GVR ++L +GD ++++A      AD           S  
Sbjct: 789 AGQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEEAADEAVEESDGAAGSDG 839


>gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 871

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/899 (39%), Positives = 537/899 (59%), Gaps = 85/899 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   ++  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ G+V+GKYHPHG++++Y AL R+AQDW++R  L++GQGNFGSVDGD  A
Sbjct: 63  SDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DDL KDTVD   N+D + QEP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+PTHNL EV+DGC A IDNPDID + LM+ I+ PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+R  + IE      ++IV++EIPY VNKA ++E IA+LV+E R+  I++  DES RQ
Sbjct: 243 RIVLRAKAEIESDES-HDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDESGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+V+LN+L++ T LQS FSVN +AL   +P   TL   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVVLNKLFKMTQLQSSFSVNNIALVKGRPRLLTLKECVKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRTKY L KA++RAH+L GL IA  N+DEVV+IIR S  P  A+R L +R      
Sbjct: 362 DVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RL++LTGL  + +  E   L   I  
Sbjct: 416 --------------------FELDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIAR 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL        ++K EL  VK++    RRT I+    +   ED    + +V+TVSHLG
Sbjct: 456 LQLILDDPEECKRVMKLELEEVKEKFGDVRRTEIIPDEHEFNAEDFYPNDPVVITVSHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PLS +  Q RGG G  G   RD+DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLSEFHEQARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+L+++  + +   +      D     N Y+VFATK+G V++  L  
Sbjct: 576 PEGDKTSKGRAIQNLLNIDADDSVNAFLRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+ +   DE++ V     +N +++  + G+ V F  + +R   GR + GV
Sbjct: 636 YSRPRTNGVNAITIAEGDEVVDVRLTNGKNLLIMANRNGRAVYFDENTVRTM-GRTATGV 694

Query: 725 RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           RG+ L  GD  V+ M +V   +                                      
Sbjct: 695 RGMRLDGGDDAVVGMIVVNDPET------------------------------------- 717

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++ VSE G+GKR+   D+R +NR GKG++  +++  ++ G LVA
Sbjct: 718 --------------ETVMVVSETGYGKRSFVADYRKTNRGGKGVKTLNIT--DKTGKLVA 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESE 901
           +  V D++ +++++  G  IR+ V   R+  RAT+GV + +   K++ + SV +++ S+
Sbjct: 762 IKNVTDDNDLMIINKSGIAIRLAVANFRVMGRATQGVRLINLSKKNDVIASVCKVKTSD 820


>gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1]
          Length = 815

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|183980041|ref|YP_001848332.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
 gi|183173367|gb|ACC38477.1| DNA gyrase (subunit A) GyrA [Mycobacterium marinum M]
          Length = 839

 Score =  844 bits (2181), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/918 (37%), Positives = 514/918 (55%), Gaps = 93/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D      L A+ E ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V++RRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVIIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARV 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    ++ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGEVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATQNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ E D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDRLLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   ++ +  R GKG+      
Sbjct: 723 -------------------------YLLVATAGGYAKRTGIEEYPVQGRGGKGVLTIMYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 RR--RGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRESEIVDE-AESTE 910
           + R  E    +  AE+T+
Sbjct: 816 IARNAEENADEAVAEATD 833



 Score = 76.8 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 13/233 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ + + R GG     + +R ED +    + S+   +L
Sbjct: 616 KSYEDAPYLVLATQNGLVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSEEDLL 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G   +       +  P  R  + +  +  N  +R+ ++             Y++ 
Sbjct: 674 LVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVR------EGTYLLV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R GK  + +        ++       ++++   T  G  +R
Sbjct: 727 ATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGGGVIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                +R  AGR + GVR ++L +GD ++++A     +AD           S+
Sbjct: 787 TAARQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEENADEAVAEATDTDESS 838


>gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
 gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277]
          Length = 859

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 548/905 (60%), Gaps = 88/905 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  + IE+   + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G 
Sbjct: 242 VIRSRAEIEQH-NNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EV
Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R        
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q R+I+++RL  LTGL RD +R E   +   I    
Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+
Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P 
Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           G+  A+G+A+ N+L+++  +++   +       D+   N+ Y++F TK G +++  L  F
Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+
Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           G++L     D+V+ M  + H +                                      
Sbjct: 694 GMTLDDDGEDEVVGMISIKHPE-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV 
Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEI 902
           +  V D + +++++  G  IRV V ++ I  RAT+GV +   +K  + + SV  +   E 
Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVVSEEE 820

Query: 903 VDEAE 907
            ++AE
Sbjct: 821 ENKAE 825


>gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
 gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d]
          Length = 815

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 546/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE +  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGENVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
 gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956]
          Length = 836

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/909 (39%), Positives = 546/909 (60%), Gaps = 89/909 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++E    IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   PEQEMPGRITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GS
Sbjct: 182 TNIPTHNLGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G
Sbjct: 242 IIVRAKVEIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+++R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EE
Sbjct: 302 MRIVIDVRRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM         
Sbjct: 362 VVRRRTEFDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q +AIL+LRL RLTGL R+ I +E   L   I + 
Sbjct: 413 -----------------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+ + R+  II  EL+ ++++    RRT +    + ++EDED I  ED++VT++H G
Sbjct: 456 KDILAHQERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+P+  ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +
Sbjct: 516 YVKRLPVDEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F 
Sbjct: 576 PEYGRAAQGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTPVTEFK 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G  A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG
Sbjct: 635 NIRSNGIKAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
             L  GD +I  A +                                             
Sbjct: 694 ARLRDGDYLIGAAPLN-------------------------------------------- 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    ++  +L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  
Sbjct: 710 ---------EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTT 758

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE- 905
           V  ++ +++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +     + 
Sbjct: 759 VQGDEDLMVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDP 818

Query: 906 ----AESTE 910
               AE  E
Sbjct: 819 TEASAEEAE 827



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 17/231 (7%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V+  G VKR P++ ++  R  G     + + + D + ++ IV    +++  + LG   
Sbjct: 617 FFVTRQGTVKRTPVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 674

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV  +      A   A +    L  G+ +    P  ED+       V+  ++ G  ++
Sbjct: 675 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 725

Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
              S++  I   G + +K     +    +  + T   + D+++ T  G  +RF + ++  
Sbjct: 726 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 783

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              R+++GV  I +     V +M  V    A+ D      +         +
Sbjct: 784 QTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPN 834


>gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii]
          Length = 829

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/914 (37%), Positives = 512/914 (56%), Gaps = 92/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     +DN     +  L A+ E ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IHDAYTTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRHYVAHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ KL+DF      G +A+ L   DE++    C+ + D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D ++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 723 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  ++  +++
Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLA 815

Query: 894 VERIRESEIVDEAE 907
           + R  E+   +  E
Sbjct: 816 IARNAEANADEAVE 829


>gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
 gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D]
          Length = 815

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/898 (39%), Positives = 547/898 (60%), Gaps = 86/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  
Sbjct: 2   DNQNQDHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEVMGK+HPHG+++IY+A+A MAQD+S R +L++G GNFGS+DGD PAA
Sbjct: 62  DKPYKKSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYD +  EPVVL AR P +LVNG  GIAVGM 
Sbjct: 122 MRYTEARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMT 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E++ G   +++NPD+ +  LM  I GPDFPTG +I+GR+GI  AY TG+G+
Sbjct: 182 TNIPPHNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIMGRSGILRAYKTGKGN 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + I+     RE+I+++EIPY VNKA +++KIA+L R+K +  I  ++DESD++G
Sbjct: 242 IVVRAKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+ I+++R ASA V+LN L++ T LQS F VNMVA+    P    L  IL+ ++A +E 
Sbjct: 302 LRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGSPHVLNLKQILQYYLAHQEN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRTKY L KA  RAH++ GL IA+ ++DE+++IIR S N + A+ +L+ R       
Sbjct: 362 IITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITR------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L + Q +AIL++RL RLTGL RD +  E   L  +I + 
Sbjct: 415 -------------------FGLDDRQAQAILDMRLVRLTGLERDKLEEEYRDLLEKIDDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
            DIL+   R+  II  ELL ++      RRT I +  ++ ++DED I ++++++T++H G
Sbjct: 456 KDILAKPERVDQIIFNELLDIQKRFGDERRTEISDSEIISIDDEDLIEKQNVLLTLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P   ++ Q RGG+G  G+ ++++DF+  L  V+TH  +LFF++ G VY +K + +
Sbjct: 516 YIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  +IN++ L +GE++  ++    +++   N Y++F TK+G V+R  +S+F 
Sbjct: 576 PEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT---NKYLMFVTKYGIVKRISISEFT 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I RSG IA+ L   DE+ +V       +IL+ T+LG  V F  + +R   GR + GVRG
Sbjct: 633 NIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTM-GRVASGVRG 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V+  +IV                                             
Sbjct: 692 IKLRANDYVVGSSIVDD------------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SEKG+GKRT + ++ I +R   G++  +V++ N  G LV V  
Sbjct: 709 ----------HSEVLVISEKGYGKRTLASEYPIKSRGCMGVKTANVTEKN--GPLVGVTV 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+ ++ ++L++D G +IR+ V+ +    RAT GV +    +  +V S+ R++  +  +
Sbjct: 757 VDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRLIKLDQGTKVASLTRVKSEDNSE 814


>gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
 gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782]
          Length = 841

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/896 (42%), Positives = 551/896 (61%), Gaps = 92/896 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE  E+ I  + I  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G   
Sbjct: 2   ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K     GE +  +HPHG+AA+YD+L RMAQD+SLR  L++G GNFGS DGD  AA
Sbjct: 62  DKPYRKSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K +  +L D+ KDTVDF+PN+D    EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA-LMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           TNIP HNLGE +DG  AV+DNP+I +D  +M+ I+GPDFPT A I+G+ GI++AY TGRG
Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKRGIRDAYKTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
            +++R  + IE+  G+R +IVVTEIPY VNKA ++EKIA+LV++K+I  I+ ++DES R 
Sbjct: 242 RLIVRSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGRE 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-----GYKPERFTLIGILKA 360
           +  R+VI+LKR A+ +V+LNQLY+ T LQ  FSVNMVA+       Y+P    L  ++  
Sbjct: 302 EPVRIVIDLKRDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDY 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A +E+V+ RRTK+ L+KA  RAH+L GL IA+ NLDEV+RIIR S     A+ +L +R
Sbjct: 362 YIAHQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSER 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q++AI+++RL RLTGL R+ + +E N L
Sbjct: 422 --------------------------FGFSDKQSQAIVDMRLGRLTGLEREKLESEYNEL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +IK   D+L++   +  IIK EL  +K++    RRT+I     +++ ED I  ++ V+
Sbjct: 456 LEKIKYFRDVLANEILVHQIIKDELTVIKNKYADERRTKIEIDEDEIDIEDLIQEQESVI 515

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+P   Y++QRRGGKG  G+  R+EDFV +LF+ STH  ++FF++ G VY+
Sbjct: 516 TMTHFGYIKRLPADTYKSQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYR 575

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P    QA+G A++N+L LN  E++TT++P  E +     LY+V ATK+G V++ 
Sbjct: 576 LKAYEIPESGRQAKGTAIVNLLQLNGDEKVTTVIPIQEYK---EGLYLVMATKNGLVKKT 632

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L ++  I + G  A+ L   DE++ V+      DI+L+T  G  +RF  +  R   GR 
Sbjct: 633 DLMEYDSIRKGGLAAVSLRENDELIDVKLTDGNQDIILSTVNGMAIRFKETDARPI-GRV 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV+G+ L +GD +I M +                                        
Sbjct: 692 SQGVKGMELDEGDFIIGMEVCTDNTT---------------------------------- 717

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L V+E GFGKRT   ++++  R GKG+    +++  + G 
Sbjct: 718 -------------------LLVVTENGFGKRTELDEYKVQTRGGKGVLTYRITE--KTGK 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            + +  V+++D I+L+S  GT+IR+ VNEI I  RAT+GV +   ++   VVSV R
Sbjct: 757 SIGMLLVSEDDDIMLISSDGTIIRMKVNEISILGRATQGVTLMRMSEGNNVVSVAR 812



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +   + +  + +E +  E   ++L  +++ ++T++  G+ KR  +  ++   R GKGI  
Sbjct: 484 KNKYADERRTKIEIDEDEIDIEDLIQEQESVITMTHFGYIKRLPADTYKSQRRGGKGIIG 543

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886
               + + +  L   F  + +  I+  ++KG + R+   EI  + R  KG   V +    
Sbjct: 544 LSTREEDFVKNL---FVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNLLQLN 600

Query: 887 KDERVVSVERIRE 899
            DE+V +V  I+E
Sbjct: 601 GDEKVTTVIPIQE 613


>gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1]
          Length = 837

 Score =  844 bits (2180), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/891 (38%), Positives = 534/891 (59%), Gaps = 83/891 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRI+F   ++G  +N+ + K AR
Sbjct: 5   QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+YDA+ RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 65  IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   + D+ K+TVDFRPNYD +  EPVVL  R PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ +  + ++D+    +D LM+ ++GPDFPTG  +    G+ +AY TGRG++ +RG   I
Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLVDAYTTGRGTVKVRGKVEI 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+     + IV+ EIPY +NK++++EKIA LV E+RI  +ADLRDESDR+G RVVI+LKR
Sbjct: 245 EERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLKR 304

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   D+++N LY+YT L+S + +NM+A+   +P+   L   L  F+  R E+++RRT+Y 
Sbjct: 305 GTIPDIVVNALYKYTPLESSYGINMLAVVDNRPQLLDLKSALSHFLEHRREIIIRRTRYD 364

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL IA+ N+DEVV +IR S  P+ A+  LMQR                
Sbjct: 365 LRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQR---------------- 408

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q++AIL++RL RLT L  + + +E   L  +I+    IL +   
Sbjct: 409 ----------FGLSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEV 458

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L  ++++E   ++D   T RRT ++      +  ED I  +D+V+T+S  GY+KR  L  
Sbjct: 459 LRQVMREEFTEIRDTYATKRRTEVLMDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDN 518

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +G+   D+DFV +    + H  +L F++ G +++ KV ++  GS  A+G
Sbjct: 519 YQQQRRGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKG 578

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N+L L + E +TT++   E      + + +F TK G V+R+  S + +  + G IA
Sbjct: 579 VHIANLLPLEKDEWVTTVLSVREFA---EDRFFLFVTKRGMVKRSSASLYARARKGGLIA 635

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V     ++ ++LTT  G  +RF    +R   GR++ GV+G++L+  D+V
Sbjct: 636 VGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPM-GRSATGVKGVALSGDDRV 694

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++ A++   D   +                                              
Sbjct: 695 VACAVLPGDDTSTE---------------------------------------------- 708

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I+++S  G+GKRT    +R+ +R GKG++   V+   + G ++   PV D++ ++L
Sbjct: 709 ----IMSISSNGYGKRTRIELYRLQSRGGKGVKNFRVTP--KTGDVIGAMPVRDDEALVL 762

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           ++    +IR+ V+E+R   RAT GV++    +   VV  +R+ E E+V+E+
Sbjct: 763 LTSTNKIIRMSVDEVRSVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEES 813



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 136/421 (32%), Gaps = 25/421 (5%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL K      +L  + +    + E    IR +     A +   +   + 
Sbjct: 431 EHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTY----ATKRRTEVLMDE 486

Query: 425 SDIKDLIDLIDDSS-----YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +   + DLI D          G      L   Q +      +A L     D ++  L +
Sbjct: 487 LEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTT 546

Query: 480 LGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
              +            +L    + +   + K            +  +          ED 
Sbjct: 547 TNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDR 606

Query: 539 VVT-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V+  G VKR   S+Y   R+GG     V +RD+D +  +  +     V+  +  G 
Sbjct: 607 FFLFVTKRGMVKRSSASLYARARKGG--LIAVGLRDDDELIMVREIHNDDHVVLTTGGGM 664

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +   +  P   P  R    +  ++L+  +R+      P D++S     ++  + +G  
Sbjct: 665 AIR---FACPDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTE---IMSISSNGYG 718

Query: 658 RRNKLSDFI----QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +R ++  +              +   + D ++       +  ++L T   + +R  +  +
Sbjct: 719 KRTRIELYRLQSRGGKGVKNFRVTPKTGD-VIGAMPVRDDEALVLLTSTNKIIRMSVDEV 777

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR ++GV  + L +G  V+    V   +   +                   TE   
Sbjct: 778 RSV-GRATMGVMLVRLDEGAIVVGFDRVDEREVVEESAPAQSSEQKTAPEGGDAGTEGTA 836

Query: 774 S 774
            
Sbjct: 837 G 837


>gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152]
 gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152]
          Length = 836

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/917 (38%), Positives = 516/917 (56%), Gaps = 94/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   E     +  V I  EMQNSY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MTDITLPP-ESAGDRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG YHPHG++AIYD L RMAQ W++R  L++GQGNFGS 
Sbjct: 60  YDNGYRPDRGYVKSARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  +L ++  +TVDF PNYDG  QEPVVL +R PN+L+NG  
Sbjct: 120 GNDGAAAMRYTECRLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSN 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +           + +  L A ME I+GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGTQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ +  R  IV+TE+PYQVN    +  IAE V++ +I  I
Sbjct: 240 IHDAYTTGRGSIKMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+ DE SDR G R+V+ +KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 300 ADIHDESSDRVGLRIVVTVKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V++RRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S N +TAR 
Sbjct: 360 QMIRLYVNHQLDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL+++L RL+ L R  I +
Sbjct: 420 GLME--------------------------LLDIDEIQATAILDMQLRRLSALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL    R   I++ EL  + ++    RRT+IV    D+ DED I R
Sbjct: 454 DLARIEAEIADYKDILDKPERQRAIVRDELAEIVEKYGDERRTQIVSADGDVADEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E+I  I+     E   +  Y+V ATK+G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEKIAQIIQIKTYE---DAPYLVLATKNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++LSDF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSRLSDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSAQGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNAEDELLSLNVVRPGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++    R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYTAQGRGGKGVLTIQFD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                G LV    V+D+D++  ++  G +IR   N++R A R TKGV + +  + + +++
Sbjct: 757 AR--RGTLVGALIVDDDDELYAITSGGGVIRTAANQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERI-RESEIVDEAEST 909
           + R   E + VD  + T
Sbjct: 815 IARNADEPDAVDGGDDT 831


>gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
 gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois]
          Length = 869

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 409/898 (45%), Positives = 599/898 (66%), Gaps = 37/898 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V++  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++   WNK Y K
Sbjct: 2   STIIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 62  SARVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEV 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+  + FLLDDL +++VDFR NYD S  EPVVL A++PN+LVNG  G+AVGMATN+PTH
Sbjct: 122 RLEYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C   ++N ++  D L+++I+GPDFPTG +I+G  GIK ++ TG+GSI+IR  
Sbjct: 182 NLSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFETGKGSIIIRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H E+T   R+ I+V E+PYQVNKA ++E IA LV+EKR+  I+DLRDES+++G RVVIE
Sbjct: 242 THFEETET-RKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGAS +V+LNQL++ T LQ+ +S NM+ L+  +P   +L  IL AF+A R+EV+ RRT
Sbjct: 301 LKRGASFEVVLNQLFQMTQLQTSYSTNMMLLDNMRPTLMSLRDILAAFIAHRKEVISRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KAR++A+VLV L +A+ N+DEVVRI++ S + ETA + L  + W   +  +L+  
Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELL-- 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           ++  S     +    LS  Q++AILE+++ R+T   +  +  E+++    +KEC  IL S
Sbjct: 419 VETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGS 478

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            + L  +I QEL  +K +    R++ I         +ED I RE +VVT ++ GY+KRV 
Sbjct: 479 EAVLTNVIVQELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVQ 538

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S YR QRRGGKGR    ++ ED +  +F++STH  +LFFSS G VYK K ++LPIG PQ
Sbjct: 539 ISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIGEPQ 598

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG+AL+NI  L   E IT+I+P        +   ++F T  G V+RN +SDF  +  +G
Sbjct: 599 SRGRALVNIFDLADDESITSILPLKS----SDAENLIFLTAQGKVKRNSMSDFAYVPANG 654

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K+A+KL+  D ++SV+T   E+ I ++T+ G+C+RF +  +RV   R+S GV+ I+L K 
Sbjct: 655 KVAIKLNDNDALISVKTAQNEDCIFISTRDGKCIRFLVEDLRVLKSRSSEGVKAITLGKD 714

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  IS++I+       +++  YMK    +R     +                        
Sbjct: 715 DSAISLSILNRRILSPEDKAEYMKTKFFERIQNPENH----------------------- 751

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +EQF+LTV+E G+GK TSSY++RI+NR G GI     S+ N  G +V+ F V  ++ 
Sbjct: 752 ---EEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNH 806

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           I+LV+++G +IR+  + I +  R T+GV +FS   +ERV SV  + E E  D++E+TE
Sbjct: 807 IMLVTNRGQVIRIEASNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863


>gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
 gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2]
          Length = 820

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/891 (41%), Positives = 540/891 (60%), Gaps = 87/891 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 6   EKNQDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAA 65

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+R+ L++GQGNFGS+DGD  AA RY
Sbjct: 66  YKKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRY 125

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD +  EP VL +R PN+L+NG  GIAVGMATNI
Sbjct: 126 TEARMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNI 185

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L E++D  V +I+NP  +L  +ME I+GPDFPTG +I G+ GI NAY TGRG I +
Sbjct: 186 PPHRLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIFGKQGILNAYKTGRGRIKV 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK   +RE IV+ EIPYQVNKA ++E+IA++VREK++  I+++RDESDR+G RV
Sbjct: 246 RAKTHIEKVK-NREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+   +D+ILN LY+ T ++  F + ++A+   +P+ FTL+ +L  F+  R  +V+
Sbjct: 305 VIELKKDVMSDIILNNLYKSTQMEVTFGIILLAIVNKEPKVFTLLELLHLFLNHRRTIVI 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA+ RAH+L GL  A+ N+DEV+  I+ S +  TAR  LM++          
Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEK---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q  AIL+++L RLTGL R+ + NE   L  EI+    I
Sbjct: 415 ----------------FELTEIQANAILDMKLQRLTGLEREKLENEYKELMEEIERLSAI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  +L  IIK ELL +K++  TPR T IVE   +++ ED I  E MVVT++H GY+KR
Sbjct: 459 LKSEEKLNEIIKTELLEIKEKFTTPRLTEIVESYEEIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPL  Y  Q+RGGKG++ V   ++DF+ D FI +TH +++F +  G +Y  KV+++P   
Sbjct: 519 VPLKQYEKQKRGGKGKTAVTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAG 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+L L   E+I  I+P  +      +  + F TK+G V+R  L++F  I  
Sbjct: 579 RTAKGKAVVNLLQLQPDEKIKAIIPTTDFS---EDKSLAFFTKNGIVKRTNLAEFSNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE++  +    E   + + TK G C+RFP+  +R   GR++ GV GI  
Sbjct: 636 KGVRAITLDESDELVEAKIVKPETKWLFIITKKGMCIRFPVHDVREM-GRSARGVTGIRF 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +GD V+    +                                               
Sbjct: 695 KYEGDYVVGAETI----------------------------------------------- 707

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +EQ +LTVSEKG GKRT + ++R  +R GKG+ A  ++          V  V 
Sbjct: 708 -----AQEEQELLTVSEKGIGKRTQASEYREQSRGGKGVIAMKLTHKTGDVV--GVVTVE 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +N  +++++  G +IRV +  IR A R T GV+I      ++VVS+ +  +
Sbjct: 761 NNKDLMVLTSSGKMIRVDMESIRKAGRNTSGVMIVRLESGDKVVSIAKCPK 811


>gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
 gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1]
          Length = 822

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/901 (41%), Positives = 551/901 (61%), Gaps = 85/901 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++GI    +T+EM+ S+++YA++VI+ RA+PD+RDGLKPV RRI+ GM ++G   +K Y
Sbjct: 2   EQRGIKKRLLTEEMKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R ++++G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ D+ KDTV+F PNYDG   EP VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKISMELVRDINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNLGEV+D  +AV  NPDI +  LM + I+GPDFPTGA ILG++ IK AY TG G I++
Sbjct: 182 PHNLGEVIDAILAVSHNPDITIMELMEDYIQGPDFPTGAYILGKSAIKKAYETGNGLIIM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I    G ++ I+V EIPY VNKA ++EK+AE V+EKRI  I ++RDES+R+G R+
Sbjct: 242 RAKTDIIDIHGGKKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL++    +VILNQL++ TSLQ+ F VN +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 302 VIELRKDVQPEVILNQLFKLTSLQTTFGVNTIALVNNEPQTLNLKQMITYYLDHQEEVIK 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA DRAH+L GL  A+  +D ++ +IR S   E  ++ LM            
Sbjct: 362 RRTAYDLKKAEDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q +AI E++L RL GL R+ I NELN L   I +  DI
Sbjct: 412 ----------------FDMSERQAKAIREMQLQRLAGLEREKIENELNDLLTLIADLKDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R R+L II+ ELL +KD+    RRT I++G  D+EDED I  ED++++++  GYVKR
Sbjct: 456 LENRERILAIIEAELLQLKDKFADKRRTEIIQGTFDLEDEDLIPVEDIIISLTTNGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ Q RGG+G  G+   ++D V  L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 516 MPVDTYKTQNRGGRGIKGMATNEDDIVDSLINMSTHDDLLFFTNFGKVYRIKGYNVPEFG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFP-EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L+L++ E + +++    ED       Y+ F T +G V++  + +F  I 
Sbjct: 576 RTAKGLPVVNLLNLDKDEYVKSMISIRKEDILEKKAEYLFFVTLNGLVKKTHIDEFENIR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++SV+  T    IL+    G+ +RF  S +R   GR + GVRGI++
Sbjct: 636 QSGKIAIGLKEDDQLVSVKLTTGNAQILVAASNGKLIRFKESDVRKM-GRTASGVRGINV 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G  VI M                                                   
Sbjct: 695 DGG-HVIGMT-------------------------------------------------- 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + QFI+ +SE G+GK +   D+R S+R GKG++  + +   + G LVA+  VN 
Sbjct: 704 ---TDQEGQFIMAISENGYGKMSPLDDYRESHRGGKGVKTINTTA--KTGQLVALRAVNG 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++ +++++ +G +IR+P+++++ A R T+GV +   A+   V SVE + ++E  +E  S 
Sbjct: 759 DEDLLIITSEGIVIRLPMDQVKTAGRNTQGVRLIKVAEGSTVSSVEVVEKAEEDNEEPSD 818

Query: 910 E 910
           E
Sbjct: 819 E 819


>gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
 gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010]
          Length = 863

 Score =  844 bits (2179), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/896 (39%), Positives = 538/896 (60%), Gaps = 86/896 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGM  +G  
Sbjct: 3   ENQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNF 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N+ Y KCAR+ GEV+GK+HPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD  A
Sbjct: 63  SNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSAA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D +  EP V+  + PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNL EV+DGC A IDNP+I  + LM+ I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIYGLQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE      ++IVVTEIPY VNKA ++E IA+LV+E R+  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIE-AGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+++KR A+A+VILN+L++ T+LQS FSVN +AL   +P    L   +K FV  R 
Sbjct: 302 GMRIVVDVKRDANANVILNKLFKMTALQSSFSVNCIALVNGRPRLLNLRECIKYFVEHRH 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V +RRT++ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +R      
Sbjct: 362 DVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q++AI+++RLA+LTGL  D +  E   L   IK 
Sbjct: 416 --------------------FELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKS 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL +  R   ++K+EL  VK++    RRT I+    +   ED    + +V+T+SHLG
Sbjct: 456 LQEILDNPERCKEVMKEELNEVKEKYGDDRRTEIIPDEHEFNAEDFYPNDPVVITISHLG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR PL+ ++ Q RGG G  G   R++DF   ++  + H ++LFF+  G  Y  K + +
Sbjct: 516 YIKRTPLTDFKEQARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSD 664
           P G   ++G+A+ N+LSL  G+ +   +     ++E   +  YVVF TK G V++  L  
Sbjct: 576 PEGDKNSKGRAIQNMLSLEPGDSVNAFLRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G IA+ ++  DE++ V      +++++  + G+  RF    +R   GR S GV
Sbjct: 636 YSRPRTNGVIAININESDEVVDVRLTNGNDELIIANRNGRACRFHEKHVRTM-GRVSTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L     D+VI M +V                                         
Sbjct: 695 RGMKLDDDCEDEVIGMVVVND--------------------------------------- 715

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                        + + ++ VSE+G+GKR+   D+R++NR GKG++  ++++  + G LV
Sbjct: 716 ------------AENETVMVVSEEGYGKRSLVDDYRLTNRGGKGVKTLNITE--KTGKLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERI 897
           A+  V D++ +++++  G +IR+ V + R+  RAT+GV + +   K++ + SV ++
Sbjct: 762 AIKTVTDDNDLMIINKSGIVIRMAVAKCRVMGRATQGVRLINLSKKNDTIASVCKV 817


>gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 839

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/901 (38%), Positives = 511/901 (56%), Gaps = 92/901 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    +    +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGDAADRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L  + ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     +DN     +  L A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+S DR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+
Sbjct: 361 QLIRHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQ 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 421 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +
Sbjct: 632 LVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D ++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDYLLSLNVVR------------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 +  ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 720 ----------------------EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+++ ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 RR--RGRLVGALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 V 894
           +
Sbjct: 816 I 816



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G VK+  L+ + + R GG     + +RD D +    + S    +L  
Sbjct: 618 YEDAPYLVLATRNGLVKKTKLTDFDSNRSGG--IVAINLRDNDELVGAVLCSAEDDLLLV 675

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G   +       +  P  R  + +  +  N  + + ++             Y++ AT
Sbjct: 676 SANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDYLLSLNVVR------EGTYLLVAT 728

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  + ++    R GK  + +        ++      +++++   T  G  +R  
Sbjct: 729 SGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSELYAITSGGGVIRTA 788

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
              +R  AGR + GVR ++L +GD ++++A      AD           S  
Sbjct: 789 AGQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEEAADEAVEESDGAAGSDG 839


>gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           amylolyticus DSM 11664]
          Length = 826

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/904 (40%), Positives = 545/904 (60%), Gaps = 86/904 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           + ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV 
Sbjct: 3   NDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PA
Sbjct: 63  PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVGM
Sbjct: 123 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            TNIP HNL EV+ G   ++ NPD+    LM++I GPDFPTG +I+GR GI  AY TG+G
Sbjct: 183 TTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPTGGIIMGRGGIYRAYETGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+ 
Sbjct: 243 NIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDESDQT 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +LK ++  +E
Sbjct: 303 GMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDGAPHFLTLKQMLKYYLDHQE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRTK+ L KA  RAH+L GL IA+ ++DE+V+IIR S + + A+  L+ R      
Sbjct: 363 DVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L + Q++AIL++RL RLTGL RD +  E   L ++I +
Sbjct: 417 --------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIAD 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHL 545
             DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++T++H 
Sbjct: 457 YKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVISIEDEDLIEKQNVLLTLTHK 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P++ ++ Q RGGKG  G+ +++ DF   L   STH  +LFF++ G VY +K + 
Sbjct: 517 GYIKRMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYE 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  ++N+L L +GE+I T++  PE     ++ Y+ F TK G V+R  +S+F
Sbjct: 577 IPEFGRTAKGLPIVNLLQLEKGEKIQTVINIPEGA---DDNYLFFITKMGTVKRTHVSEF 633

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GVR
Sbjct: 634 SNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRPM-GRTAAGVR 692

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D V+                                                 
Sbjct: 693 GINLRDNDYVVG------------------------------------------------ 704

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E+      ++ +SEKG+GKRT + ++ I  R GKGI+ T+VS+ N  G L  V 
Sbjct: 705 -----SEVIKPNDEVMVISEKGYGKRTPASEYPIKGRGGKGIKTTNVSEKN--GPLAGVT 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            V+ +  I++++  G +IR  ++++    R T GV +     D +V S+  +   +  + 
Sbjct: 758 VVDGSKDIMVITTDGIMIRFKISDVPQTGRNTLGVRLIKVNGDSKVSSLAIVPTEDDQET 817

Query: 906 AEST 909
            +++
Sbjct: 818 TDNS 821


>gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
 gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1]
          Length = 866

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/907 (42%), Positives = 546/907 (60%), Gaps = 78/907 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I  E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +LI+GQGNFGSVDGD PAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ALM  I GPDFPTGA+I G  GI  AY TGRG I +R  +
Sbjct: 187 LTEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGRGIAEAYRTGRGKIYLRARA 246

Query: 255 HI-EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +       RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G RVVIE
Sbjct: 247 EVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL++FV+ R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQPKILPLKEILQSFVSHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L +A+A++D ++ +IR +P    A+  LM+ +W  SD+ +++  
Sbjct: 367 MFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLKR 426

Query: 434 IDDSSYTIGS----------------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                 TIG                 D + +L+E Q +AIL+LRL +LTG+  D + +E 
Sbjct: 427 SSGDQITIGRNEDARPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLDEY 486

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L I+I E + IL +  RL+ IIK EL ++K++   PRRT I+   L++ +ED I +ED
Sbjct: 487 KDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDPRRTNIIVNNLEINNEDLINQED 546

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+SH GYVK  PL+ Y AQRRGGKG+S   ++ EDF+  L + +TH ++L FSS G 
Sbjct: 547 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHDTILCFSSKGS 606

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y  KV++LP  S  ARG+ +IN+L L + ERIT I+P                      
Sbjct: 607 LYWMKVYQLPEASRGARGRPIINLLPLKENERITAILP---------------------- 644

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVF 716
                                        V      + + + T  G   +  +    R  
Sbjct: 645 -----------------------------VREYDAGHHVFMATACGIVKKTALDCFSRPR 675

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                 G+  I+L +GD++I +A+    D   +  +      + +       +    +  
Sbjct: 676 KD----GIIAINLNEGDELIGVAL---TDGSNEVMLFSTDGKAVRFSESKVRSVGRKAAG 728

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                  +        +  KE  ILT+++ G+GKRT + ++    R+ KG+ +   S+ N
Sbjct: 729 MRGIKLNDDDRLVSLIIPQKEGEILTITKNGYGKRTLAEEYPTKGRATKGVLSIKTSERN 788

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA   V  +DQI++++D GTL+R  V+EI +  R T+GV +  TAK+E VV ++R
Sbjct: 789 --GNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINVQGRNTQGVRLIRTAKNEHVVGLQR 846

Query: 897 IRESEIV 903
           + E +  
Sbjct: 847 VAEQDDD 853



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 144/402 (35%), Gaps = 34/402 (8%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
           LL++ +D    +V L   +   + ++ II+   N   A +E  +     + I + ++ I+
Sbjct: 482 LLDEYKDLLIKIVELISILKTPERLMEIIKDELN---AIKEQYKDPRRTNIIVNNLE-IN 537

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           +       D  + LS  Q     +              ++     G +  + L + ++  
Sbjct: 538 NEDLINQEDVVVTLS-HQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVANTHD 596

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------- 542
            +L    +  L        P  +R   G   +        E +   +             
Sbjct: 597 TILCFSSKGSLYWMKVYQLPEASRGARGRPIINLLPLKENERITAILPVREYDAGHHVFM 656

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+  L  +   R+ G     + + + D +  + +      V+ FS+ G   + 
Sbjct: 657 ATACGIVKKTALDCFSRPRKDG--IIAINLNEGDELIGVALTDGSNEVMLFSTDGKAVRF 714

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              ++     +A   A +  + LN  +R+ +++             ++  TK+G  +R  
Sbjct: 715 SESKVRSVGRKA---AGMRGIKLNDDDRLVSLI------IPQKEGEILTITKNGYGKRTL 765

Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
             ++    R+ K  + + + +     ++       + I++ T  G  VR  +S I V  G
Sbjct: 766 AEEYPTKGRATKGVLSIKTSERNGNVVAAIQVMTSDQIMIITDAGTLVRTRVSEINV-QG 824

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           RN+ GVR I  AK + V+ +  V   D D       +     
Sbjct: 825 RNTQGVRLIRTAKNEHVVGLQRVAEQDDDIVNEENVVNDQPE 866


>gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
 gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753]
          Length = 859

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/896 (40%), Positives = 548/896 (61%), Gaps = 86/896 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +++   + E    +  V I  EMQ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   +
Sbjct: 13  KNMDEKNMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQYE 72

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  +K Y KCA   G V+G+YHPHG+A++YDAL R+AQD+S+   L++G GNFGSVDG
Sbjct: 73  DGLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVDG 132

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE R+ K +  +L D+ KDTV+F  NYD S +EP VL +R+PN+LVNG  GI
Sbjct: 133 DPPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTGI 192

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGE +D    +IDNPD  L+ LME I+GPDFPTGA+I+GR GI+ AYA
Sbjct: 193 AVGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIMGRAGIRAAYA 252

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V+ I +    R +I+VTE+PYQVNKA ++E IA++V++KRI  I+++ D 
Sbjct: 253 TGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNIDDH 312

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G  + I+LKR AS  ++LNQLY YT +Q+ F V M+A+   +P+  TL  +L+ ++
Sbjct: 313 SDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGEPKTLTLKEMLQEYI 372

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            F+EEV+ RRT Y L KAR+RAH+L GL IA+ N+DE++ IIR S +  TA+  + +R  
Sbjct: 373 KFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTER-- 430

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L +VQT AI+++RL +LTGL R  I +EL +L +
Sbjct: 431 ------------------------FGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALEL 466

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +IK+  DIL+   R+  I+K EL+ ++++    R+T I+    +++ ED I +E+ V+T+
Sbjct: 467 KIKDYEDILAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVDIEDLIPQEECVLTL 526

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++ GYVKR  +  YR QRRGG+G SG+  R+ED  T++F++++H  V+FF+S G VY+ K
Sbjct: 527 TNFGYVKRQKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLK 586

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P GS  ++G  + N+L +   E++T+++  PE +      Y+V  T++G ++R  L
Sbjct: 587 CYEIPEGSRTSKGMNIANLLPITAEEKVTSMIRVPEFD---EEKYLVMVTRNGIIKRTLL 643

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S +    + G IA++LD  DE+  V      N++++ TK G  +RF    +R   GR + 
Sbjct: 644 SAYNSARKGGLIAIELDEGDELAWVRVTDGSNELIVATKKGMAIRFHERDVR-LVGRTAR 702

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L + D V+ MA +                                         
Sbjct: 703 GVKAITLGEDDCVVGMARLREGGK------------------------------------ 726

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +LTVSE G+G+ +   D+RI  R GKG+    V   ++ G + 
Sbjct: 727 -----------------VLTVSETGYGRLSPISDYRIQYRGGKGLLNYHV---DKYGDVA 766

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           A+  V+ +D +IL+S  G +IR+  + IR  +R +KGV +    +D +VV++ R  
Sbjct: 767 AIKVVDLDDDVILISADGVIIRIQADSIRECARPSKGVRVMRIGEDNKVVTLARAP 822



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/425 (13%), Positives = 131/425 (30%), Gaps = 34/425 (8%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            ++ +  L     +      +      +  +V+        + A     +    + ++  
Sbjct: 454 RQKIEDELAALELKIKDYEDILAHEERVKAIVKDELMGIRNKYADERKTEIMAVSGEVD- 512

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I+ +      + +       + Q               GR           +  +  + 
Sbjct: 513 -IEDLIPQEECVLTLTNFGYVKRQK----MDTYRTQRRGGRGISGMSRREEDVATEMFVI 567

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD------------MEDEDCIVRED 537
                        +       E+    RT     + +            M        E 
Sbjct: 568 NSHDYVMFFTSTGRVYRLKCYEIPEGSRTSKGMNIANLLPITAEEKVTSMIRVPEFDEEK 627

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +V V+  G +KR  LS Y + R+GG     +   DE     +        ++  +  G 
Sbjct: 628 YLVMVTRNGIIKRTLLSAYNSARKGGLIAIELDEGDELAWVRV--TDGSNELIVATKKGM 685

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    ARG   I +   +                      V+  ++ G  
Sbjct: 686 AIRFHERDVRLVGRTARGVKAITLGEDD---------CVVGMARLREGGKVLTVSETGYG 736

Query: 658 RRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R + +SD+    R GK  +        D + +++    ++D++L +  G  +R    +IR
Sbjct: 737 RLSPISDYRIQYRGGKGLLNYHVDKYGD-VAAIKVVDLDDDVILISADGVIIRIQADSIR 795

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             A R S GVR + + + ++V+++A   H + D  E +  +++       I     +  +
Sbjct: 796 ECA-RPSKGVRVMRIGEDNKVVTLARAPHEEEDDGEELEGLENTEGGEEEIPDSAGDEEA 854

Query: 775 LKNDS 779
              + 
Sbjct: 855 QTPEE 859


>gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740]
 gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes]
          Length = 828

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/907 (41%), Positives = 546/907 (60%), Gaps = 88/907 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S      + I  V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV
Sbjct: 1   MSDLLSNNEDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  
Sbjct: 61  GARAAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ +A+  +L D+ K+TVDF  NYD + +EP VL +R PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H L EVV+  + +ID+P  +L+ LM  + GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHRLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIYGKQGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R  +HIEK    ++ IV+ E+PYQ NKA ++E+IAEL +EK I  IA++RDESDR
Sbjct: 241 GRIRVRAKTHIEKNKT-KDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELK+ A ++++LN L++ T++++ F + ++A++  +P+ FTL+ +L  F+  R
Sbjct: 300 EGIRVVIELKKDAMSEIVLNHLFKSTAMETTFGIILLAIHNKEPKIFTLLELLNLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + VV+RRT + L KA+ RAH+L GL IA+ ++DE+V +IR S + + A+  LM R     
Sbjct: 360 KTVVIRRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMAR----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q++AIL++RL RLTGL R+ I NE   L  EI+
Sbjct: 415 ---------------------FGLSEIQSQAILDMRLQRLTGLEREKIENEYQELLKEIE 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL S  +L  IIKQEL+ ++++  T R+T I E    ++ ED I  E  VVT+SH 
Sbjct: 454 RLTAILRSEEKLNEIIKQELIEIREKFSTKRKTTIEEDYESIDIEDLIPNEPTVVTMSHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKRVPL  Y  Q RGGKG+      D+DF+   F+ +TH ++LF +  G +Y  KV+R
Sbjct: 514 GYVKRVPLRSYEKQNRGGKGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYR 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A GKA++N++ +   E+I   +   +      +  ++F TK+G V+R+ LS+F
Sbjct: 574 IPEAGRTAIGKAVVNLIQIGADEKIMATITTQDFN---EDKSLMFFTKNGIVKRSNLSEF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             I   G  A+ LD  DE+++         +I + T  G C+RFP+  IR   GR + GV
Sbjct: 631 KNIRSVGIRAINLDDNDELVTARIIDSNVKEIFVATYKGMCIRFPVEDIREI-GRVARGV 689

Query: 725 RGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            GI   +  D V     +                                          
Sbjct: 690 TGIRFKEDEDYVAGATTIGD---------------------------------------- 709

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +++ +LTVSEKG GKRT + ++R+ +R GKG+ A  ++   + G LV 
Sbjct: 710 ------------EKEELLTVSEKGIGKRTEAEEYRLQSRGGKGVIAMKLTP--KTGQLVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  V+++  ++L++  G +IRV +  IR A R T GV+I + + D++VVS+ R  + E  
Sbjct: 756 VVNVDESMDLMLLTSTGKMIRVDMQTIRKAGRNTSGVIIVNVS-DDKVVSIARCPKEENP 814

Query: 904 DEAESTE 910
           +E  S E
Sbjct: 815 EEEASDE 821


>gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
 gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama]
          Length = 869

 Score =  843 bits (2178), Expect = 0.0,   Method: Composition-based stats.
 Identities = 405/898 (45%), Positives = 596/898 (66%), Gaps = 37/898 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V++  E+++SYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++   WNK Y K
Sbjct: 2   STIIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEV+GKYHPHG++AIYDAL RMAQ++SL + LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 62  SARVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEV 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+  + FLLDDL +++VDFR NYD S  EPVVL A++PN+LVNG  G+AVGMATN+PTH
Sbjct: 122 RLEYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++ C   ++N ++  D L+++I+GPDFPTG +I+G  GIK ++ +GRGSI+IR  
Sbjct: 182 NLSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEGIKASFESGRGSIIIRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +H E+T    + I+V E+PYQVNKA ++E IA LV+EKR+  I+DLRDES+++G RVVIE
Sbjct: 242 THFEETEAG-KAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGAS +V+LNQL++ T LQ+ +S NMV L+  +P   +L  IL AF+A R+EV+ RRT
Sbjct: 301 LKRGASFEVVLNQLFQMTQLQTSYSTNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KAR++A+VLV L +A+ N+DEVV I++ S + E A + L  + W   +  +L+  
Sbjct: 361 EFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELL-- 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           ++  S     +    LS  Q++AILE+++ R+T   +  +  E+++    +KEC  IL S
Sbjct: 419 VETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGS 478

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            + L  +I +EL  +K +    R++ I         +ED I RE +VVT ++ GY+KRV 
Sbjct: 479 EAVLTNVIVRELNEIKAKYPQARKSIILKNVNAVYAEEDLIEREQVVVTATYSGYIKRVH 538

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +S YR QRRGGKGR    ++ ED +  +F++STH  +LFFSS G VYK K ++LPIG PQ
Sbjct: 539 ISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQ 598

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG+AL+NI  L   E IT+I+P        +   ++F T  G V+RN +SDF  +  +G
Sbjct: 599 SRGRALVNIFDLADDESITSILPLKS----SDAENLIFLTAQGKVKRNSMSDFAYVPANG 654

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K+A++L+  D ++SV+T   E+ + ++T+ G+C+RF +  +RV   R+S GV+ I+L K 
Sbjct: 655 KVAIRLNDNDALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKD 714

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  IS++I+       +++  YMK    +R     +                        
Sbjct: 715 DNAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENH----------------------- 751

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +EQF+LTV+E G+GK TSSY++RI+NR G GI     S+ N  G +V+ F V  ++ 
Sbjct: 752 ---EEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERN--GKVVSSFKVTLSNH 806

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           I+LV+++G +IR+  N I +  R T+GV +FS   +ERV SV  + E E  D++E+TE
Sbjct: 807 IMLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVE-DDDSETTE 863


>gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
 gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC
           35098]
          Length = 814

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/896 (40%), Positives = 554/896 (61%), Gaps = 86/896 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I ++ +  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M  +G++ NK  
Sbjct: 3   ENQNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPT 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+VMGK+HPHG++AIYDAL R+AQD+S R  L +GQGNFGS+DGD  AA RYT
Sbjct: 63  RKSARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+GKDTVDF PN+D    EP VL +R+PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EVRMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D C+A + +P+I +D L+EII GPDFPTGA+ILG++GIK AY TGRG I  R
Sbjct: 183 PHNLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALILGKSGIKEAYKTGRGKIKQR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
            V+ IE    +RE+I++TEIPYQVNKA ++EKIA+LV+EKR+  I+D+RDESDR+G R+V
Sbjct: 243 AVAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +E+KR ++ +++LN LY+YT L++ F +  +AL   +P+   L  +++ +V  ++EVV R
Sbjct: 303 VEIKRDSNPNIVLNNLYKYTQLENTFGIINLALVAGEPKILNLKELIEYYVDHQKEVVTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L+KARDR H++ GL IA+ ++DE+++IIR S + +  ++    +           
Sbjct: 363 RTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ++AIL+++L RL+GL  + +  E + L   I   L IL
Sbjct: 412 ---------------FKLTEVQSQAILDMQLKRLSGLEIEKLNAENDELARMIDYLLSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   L+ +I  E+  +K++    RRT+IV    ++E  +   RED+++T++  GY+KR+
Sbjct: 457 NSEETLINLIIDEMTEIKEKYADDRRTQIVPDEGEIEISELFEREDILITLTKDGYIKRL 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y+ Q RGGKG +    ++ DF+  +   +TH  +LFF+S+G V+  + + +P  S 
Sbjct: 517 PIDTYKVQNRGGKGIAAGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG+A+INIL+L  GERIT +M   +      N  +V  TK+G +++    +F  I ++
Sbjct: 577 TSRGQAIINILNLESGERITEMMTLSDL---HKNSQIVLQTKNGTIKKTDAENFANIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   D+++SV    +E ++L++TK G  ++F    +R   GR + GV+ I L K
Sbjct: 634 GIIAISLQENDKLISVRQIDKEEELLISTKNGMTIQFNSKDLRSM-GRIAQGVKAIKLDK 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+SM I                                                   
Sbjct: 693 DDEVVSMNI--------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             K +E ++L V+E  +GK+TS  +F+  NR GKG++   V++  + G +V   PV+ ++
Sbjct: 702 --KGEETYLLVVTENAYGKKTSFNNFKNQNRGGKGVKCHKVTE--KTGKVVDTLPVDLDN 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDEA 906
            I++VS  G +IR+ V +I I  R T GV + +     +R+VSV +    E  +E 
Sbjct: 758 DIMMVSLSGDMIRLSVRDISITGRNTVGVKLKNLTDDKDRIVSVTKYSTLEEEEED 813


>gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
 gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113]
          Length = 874

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/932 (38%), Positives = 522/932 (56%), Gaps = 108/932 (11%)

Query: 1   MTEHIISSDEEEEK----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +    +  +E             +  V +  EMQ SYL YA++VI+ RA+PD+RDGLK
Sbjct: 1   MADENTPNTPDELTSDELAEGAALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L
Sbjct: 61  PVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++  GNFGS   DP AA RYTEC++   A  +L D+ ++TVDF+ NYDG  QEP VL AR
Sbjct: 121 VDSNGNFGSPGNDPAAAMRYTECKMDPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPAR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFP 226
            PN+LVNG  GIAVGMATNIP HNL EV +G    + NP    + L+    + I+GPDFP
Sbjct: 181 IPNLLVNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPQATQEELLEALIDRIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           TGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+
Sbjct: 241 TGALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIAD 299

Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV++ ++  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL 
Sbjct: 300 LVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 359

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR
Sbjct: 360 DGVPRTLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIR 419

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S   +TAR  LM                          G + + E+Q  AILE++L RL
Sbjct: 420 RSDTVDTARGGLM--------------------------GLLEIDEIQANAILEMQLRRL 453

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I  E + L  +I E   IL+S  R   II +EL ++ ++    RR+++V    
Sbjct: 454 AALERQKIVQEHDELQSKIDEYNAILASPERQRQIISEELTAIVEKFGDDRRSKLVPFDG 513

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           DM  ED I  ED+VVT++  GYVKR     YR+Q+RGGKG  G  ++ +D V+  F+ +T
Sbjct: 514 DMSIEDLIAEEDIVVTITRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVSHFFVSTT 573

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF++ G VY+ K + LP    +ARG+ + N+L+    E+I  I+   + E+    
Sbjct: 574 HHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEKIARILAIRDYEAV--- 630

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTT 700
            Y+V ATK G V++  L D+      G IA+ L        DE++  E  +  +D+LL +
Sbjct: 631 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLIS 690

Query: 701 KLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
           +  Q +RF  +   +R   GR + GV+G+S  + D+++SM +V                 
Sbjct: 691 RKAQSIRFTATDESLRPM-GRATSGVKGMSFREDDELLSMNVVRPGT------------- 736

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                   F+ T ++ G+ KRT+  ++R
Sbjct: 737 ----------------------------------------FVFTATDGGYAKRTNVDEYR 756

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R T 
Sbjct: 757 VQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTM 814

Query: 879 GVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           GV + +  K + VV + R  E+    E    +
Sbjct: 815 GVQLINLGKRDAVVGIARNAEAGREAEEVEED 846



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 95/252 (37%), Gaps = 14/252 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +    +    +L       +   +L  S
Sbjct: 631 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREMADGREDELIGAELVSSADDLLLIS 690

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +       +  P  R  + +  +S  + + + ++             +V  AT 
Sbjct: 691 RKAQSIRFTATDESL-RPMGRATSGVKGMSFREDDELLSMNVVR------PGTFVFTATD 743

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 744 GGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 803

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR+++GV+ I+L K D V+ +A    A  + +E        SA     + +  
Sbjct: 804 NEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEEDSATGSAPAEEAASEAV 862

Query: 771 EITSLKNDSSVE 782
           E T    D + E
Sbjct: 863 EGTLPPADETEE 874


>gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
 gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27]
          Length = 837

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/899 (39%), Positives = 529/899 (58%), Gaps = 92/899 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               + I    I +E++ S++ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M ++G+   +
Sbjct: 4   PNARERILPRLIDEEVKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGR 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G+V+GKYHPHG++++YDAL RM Q +SLR  L++GQGNFGS+DGD  AA R
Sbjct: 64  AYKKSATVVGDVLGKYHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF PN+D   +EP VL A +PN+LVNG  GIAVGMATN
Sbjct: 124 YTEARLTRMAVEMLTDIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+   +A+IDNP++D  AL ++++GPDFPTG  I GR GI +   TGRG I+
Sbjct: 184 IPPHNLREVISAVIALIDNPELDGPALRKLVKGPDFPTGGYIYGRAGIADYQDTGRGRII 243

Query: 250 IRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  + IE+  S  + QIVVTE+PYQVNKA ++  IAELVR++++  I+ LRDESD+ G 
Sbjct: 244 MRARAVIEEKESSGKSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGV 303

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFV 362
           RVVIELKR A   V+LNQLY++T++QS F V M+AL          P+  TL   L+ ++
Sbjct: 304 RVVIELKRDAIPRVVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYI 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A R EV+VRRT++ L+KA +R H+L GL IAV N+DEV+ +IR + +  TA  +L  R  
Sbjct: 364 AHRHEVIVRRTQFDLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSR-- 421

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q  AIL +RLA+LTGL RD +  EL  +  
Sbjct: 422 ------------------------FGLSERQAEAILNMRLAKLTGLERDKLEEELVEVRA 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   IL SR R + I+K EL+ V +     RRT IV    +   ED I  E+MVVT+
Sbjct: 458 FILEMRGILESRDRRMSILKGELIQVAETYGDERRTEIVSDEGEFSIEDLIAEEEMVVTI 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR PLS+Y  Q RGG+G++   +++ DF+   ++ STHT +L F+  G  +  K
Sbjct: 518 THGGYIKRTPLSLYNRQGRGGRGKASADLKEHDFIERFYVASTHTYMLIFTDDGRCFWLK 577

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP      RGK ++N++++    RI  I+   E     +  +++F T++G V++  L
Sbjct: 578 VHELPQAGRNTRGKPIVNLINVTPDTRIRAIVVTKEFS---DTEFLLFCTRNGTVKKTAL 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S +     +G  A+K++  DE++ V+  +  ND++L T+ G  VRF  S +R   GR++ 
Sbjct: 635 SQYSNPRANGIKAIKIEQDDELMDVQVTSGNNDVVLATRHGLSVRFHESDVREM-GRDTT 693

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI L   DQ++ M ++                                         
Sbjct: 694 GVKGIELRPSDQLVGMVVIKR--------------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         E  +L V+E+G GK +   ++R+  R GKGI   + +   + G ++
Sbjct: 715 --------------EATLLVVTERGLGKCSEVSEYRVQKRGGKGILTLNRTV--KTGDVI 758

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           A+  V   D+++L++ +G  IR  V+EIR+  RA +GV + +    + V +V R+   +
Sbjct: 759 ALMEVVPEDELMLMTRQGIAIRSKVSEIRVTGRAAQGVKLVALDDLDGVSAVARVIPDD 817



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/237 (18%), Positives = 94/237 (39%), Gaps = 17/237 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  LS Y   R  G     + +  +D + D+ + S +  V+  
Sbjct: 614 FSDTEFLLFCTRNGTVKKTALSQYSNPRANG--IKAIKIEQDDELMDVQVTSGNNDVVLA 671

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     +        G   I +   +Q                     ++  T
Sbjct: 672 TRHGLSVRFHESDVREMGRDTTGVKGIELRPSDQ---------LVGMVVIKREATLLVVT 722

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + G  + +++S++    R GK  + L     + D ++++     E++++L T+ G  +R 
Sbjct: 723 ERGLGKCSEVSEYRVQKRGGKGILTLNRTVKTGD-VIALMEVVPEDELMLMTRQGIAIRS 781

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            +S IRV  GR + GV+ ++L   D V ++A V+  D + +         + +    
Sbjct: 782 KVSEIRV-TGRAAQGVKLVALDDLDGVSAVARVIPDDKEGEGEGEESGATTMEGDAE 837


>gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
 gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22]
          Length = 864

 Score =  843 bits (2177), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/927 (39%), Positives = 522/927 (56%), Gaps = 103/927 (11%)

Query: 1   MTEHIISSDEEEE----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +       EE     + +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADQNTPVTPEESGETVQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ +DTVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+   + L++     I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 IGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   +
Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVD 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                            + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARTGLM--------------------------DLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I+E  +IL+S  R  GI+  EL ++ ++    R+T +V    DM  ED
Sbjct: 454 KIIQEHDELQAKIREYNEILASPVRQRGIVSAELAAIVEKFGDDRKTMLVPYDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTVS  GYVKR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVSRGGYVKRTKTVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + E      Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYE---ATPYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  +  +DILL +K  Q +
Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLREKEDGSDDELIGAELVSPNDDILLISKKAQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  +   +R   GR + GV+G+S  +GD+++SM +V                       
Sbjct: 691 RFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                             F+ T ++ G+ KRT+  ++R+  R G
Sbjct: 731 ----------------------------------FVFTATDGGYAKRTNVDEYRVQGRGG 756

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + +
Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLIN 814

Query: 885 TAKDERVVSVERIRESE-IVDEAESTE 910
             K + VV + R  E+    +E +  E
Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGDE 841


>gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
 gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13]
          Length = 763

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/843 (43%), Positives = 525/843 (62%), Gaps = 86/843 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  +  + I  EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   + Y
Sbjct: 4   NEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPERGY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI GEV+GKYHPHG++++YDAL RMAQD+SLR +L++G GNFGSVDGD  AA RYT
Sbjct: 64  RKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 124 EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 184 PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 244 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 303 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+  L++R           
Sbjct: 363 RTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIER----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AILE+RL RLTGL RD I NE N L   I     IL
Sbjct: 412 ---------------FSLSEKQAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S  RLL +IK+ELL +K +    RRT+I +   +++ ED I  ED+V+T++H GY+KR+
Sbjct: 457 ASEERLLEVIKEELLEIKAKYSDERRTQIEKQENEIDIEDLIQEEDVVITLTHTGYIKRI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
              VY AQ+RGGKG   +  +++DFV ++ + STH+++LFF++ G VYK K + +P    
Sbjct: 517 SSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  L+NIL L   E+I T++ F +      + Y+   TK G V++  L DF  I ++
Sbjct: 577 TAKGTNLVNILPLEADEKIQTVLSFKD---VQEDGYLFMGTKLGIVKKTPLKDFKNIRKN 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE+L  +    + DI+  T+ G  +RF  + +R   GR + GV+ ISL +
Sbjct: 634 GLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDVRPM-GRTASGVKAISLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD  + M I +  +                                              
Sbjct: 693 GDVAVCMDIAVEDEK--------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G+GKRT+  ++++ NR G G+    VS  ++ G +V      ++D
Sbjct: 708 --------LLVVSENGYGKRTNLDEYKVQNRGGIGLITYKVS--DKTGKVVGATVCKEDD 757

Query: 852 QII 854
           +++
Sbjct: 758 ELM 760



 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 9/216 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ ++  T  G   R   S +     R   G++ ++  + D V ++ +        
Sbjct: 497 LIQEEDVVITLTHTGYIKRIS-SDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLL 555

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               +   Y                           +  I      +   ++ ++   ++
Sbjct: 556 FFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTVLSFKDVQEDGYLFMGTK 615

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G  K+T   DF   N    G+ A ++ +      L+       +  II V+  G  IR 
Sbjct: 616 LGIVKKTPLKDF--KNIRKNGLIALNLREG---DELLRAKITYGDADIIFVTQDGNAIRF 670

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              ++R   R   GV   S  + +  V ++   E E
Sbjct: 671 NETDVRPMGRTASGVKAISLREGDVAVCMDIAVEDE 706



 Score = 90.2 bits (222), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 99/230 (43%), Gaps = 21/230 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + LD+ DE++++   ++ ++I    K     RF +S       + +  +  + L    
Sbjct: 381 LIIALDNIDEVINIIRSSKTSEI---AKNTLIERFSLSE------KQAAAILEMRLRRLT 431

Query: 731 --KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             + D++ +    ++      +  +   + +    +    + +   S +  + +E   +E
Sbjct: 432 GLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKYSDERRTQIEKQENE 491

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              ++L  +E  ++T++  G+ KR SS  +    R GKGI+A    + + +  +      
Sbjct: 492 IDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDFVENV---LVT 548

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSV 894
           + +  ++  + KG + ++   E+  A R  KG  + +      DE++ +V
Sbjct: 549 STHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPLEADEKIQTV 598



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 104/266 (39%), Gaps = 12/266 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
                V+  T  G ++R     +    R   G  AM     D + +V   +  +++L  T
Sbjct: 499 QEEDVVITLTHTGYIKRISSDVYSAQKRGGKGIQAMTTKEDDFVENVLVTSTHSNLLFFT 558

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKH 757
             G+  +     +   AGR + G   ++   L   +++    ++   D   D  +     
Sbjct: 559 TKGKVYKIKAYEV-PDAGRTAKGTNLVNILPLEADEKI--QTVLSFKDVQEDGYLFMGTK 615

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +   ++    D + I      +       E    ++   +  I+ V++ G   R +  D 
Sbjct: 616 LGIVKKTPLKDFKNIRKNGLIALNLREGDELLRAKITYGDADIIFVTQDGNAIRFNETDV 675

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R   R+  G++A  + + +     V +    +++++++VS+ G   R  ++E ++ +R  
Sbjct: 676 RPMGRTASGVKAISLREGDVA---VCMDIAVEDEKLLVVSENGYGKRTNLDEYKVQNRGG 732

Query: 878 KGVVIFST-AKDERVVSVERIRESEI 902
            G++ +    K  +VV     +E + 
Sbjct: 733 IGLITYKVSDKTGKVVGATVCKEDDE 758


>gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
 gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680]
          Length = 864

 Score =  842 bits (2176), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/922 (39%), Positives = 524/922 (56%), Gaps = 102/922 (11%)

Query: 1   MTEHIISSDEEEEKGI----TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+    S  EEE  I      V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MTDENTPSTPEEEGEIALRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+   + L++     I+GPDFP+GA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                          G + + E+Q  AILE++L RL  L R 
Sbjct: 420 IAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E   IL+S  R  GII +EL ++ ++    RR+++V    DM  ED
Sbjct: 454 KIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYGDDRRSKLVPFDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVT++  GY+KR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + E+     Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAV---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + E+D+LL +K  Q +
Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLRETEDGSDDELIGAELVSAEDDLLLISKKAQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  +   +R   GR + GV+G+S  +GD+++SM +V                       
Sbjct: 691 RFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                             F+ T ++ G+ KRT+  ++R+  R G
Sbjct: 731 ----------------------------------FVFTATDGGYAKRTAVDEYRVQGRGG 756

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R T GV + +
Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLIN 814

Query: 885 TAKDERVVSVERIRESEIVDEA 906
             K + VV + R  E+    E 
Sbjct: 815 LGKRDAVVGIARNAEAGREAEE 836


>gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
 gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064]
          Length = 873

 Score =  842 bits (2175), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/930 (39%), Positives = 525/930 (56%), Gaps = 106/930 (11%)

Query: 1   MTEHIISS----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +   +     +E+ +  I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADETSTPAAAEEEQPQMRIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    K + KCAR+ G+VMG YHPHG+ +IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  +L D+ +DTVDF+ NYDG  QEP VL AR PN+LV
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLV 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    +++P+   + L++     I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ R
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGR 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 IGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EVVVRRT++ L KA +RAH+L GL  A+ ++DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                            + + EVQ  AILE++L RL  L R 
Sbjct: 420 IARAGLM--------------------------DLLSIDEVQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E   L  +I E   IL+S  +   I+ +EL  + ++    RR+++V    DM  ED
Sbjct: 454 KILQEHAELQEKINEYNAILASPEKQRRIVSEELAVIVEKYGDDRRSQLVPFDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTISRGGYVKRTRTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    ERI  I+   + E      Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDERIAQILAVRDYE---AAPYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS--------RDEILSVETCTQENDILLTTKLG 703
           TK G V++  L D+      G IA+ L           DE++  E  +  +D+LL +K  
Sbjct: 631 TKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAADDLLLISKKA 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF  +   +R   GR + GV+G+S  +GD+++SM +V                    
Sbjct: 691 QSIRFTATDEALRPM-GRATSGVKGMSFREGDELLSMNVVRP------------------ 731

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                F+ T ++ G+ KRT+  ++R+  
Sbjct: 732 -----------------------------------GTFVFTATDGGYAKRTAVDEYRVQG 756

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+A  + +  + G+LV    V ++D+I+ ++  G +IR  VNE+R   R T GV 
Sbjct: 757 RGGLGIKAAKIVE--DRGSLVGALVVEESDEILAITLGGGVIRTRVNEVRETGRDTMGVQ 814

Query: 882 IFSTAKDERVVSVERIRESE-IVDEAESTE 910
           + +  K + VV + R  E+    DE + T+
Sbjct: 815 LINLGKRDAVVGIARNAEAGHEADEVDGTD 844



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 93/261 (35%), Gaps = 17/261 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTH 586
                 +V  +  G VK+ PL  Y + R GG     +   D       D +    +VS  
Sbjct: 621 YEAAPYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRETDNGAEGTADELIGAELVSAA 680

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  S      +       +  P  R  + +  +S  +G+ + ++             
Sbjct: 681 DDLLLISKKAQSIRFTATDEAL-RPMGRATSGVKGMSFREGDELLSMNVVR------PGT 733

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLG 703
           +V  AT  G  +R  + ++    R G    A K+      ++      + ++IL  T  G
Sbjct: 734 FVFTATDGGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDEILAITLGG 793

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +R  ++ +R   GR+++GV+ I+L K D V+ +A    A  + DE     +       
Sbjct: 794 GVIRTRVNEVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGHEADEVDGTDEAAVVDGT 852

Query: 764 LISGDTEEITSLKNDSSVEGN 784
                  E    +  +     
Sbjct: 853 DTGTAVSEGEGTEPSAGEREE 873


>gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215]
 gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 865

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/913 (37%), Positives = 534/913 (58%), Gaps = 69/913 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S +    E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I NP I+   L EII+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  + TG+GSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK+
Sbjct: 241 IRETFKTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR +   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDSYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +
Sbjct: 361 SLRKMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSIS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS +Q+ AIL+++L RLT L  D 
Sbjct: 421 AREKL--------------------------QNEHKLSSIQSDAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ E N L  +I     IL+S+ R+  II +EL  +  +  +PR+T I++    ++D D 
Sbjct: 455 IKEEHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILDLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  +  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L F
Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++         ++ Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFV---DDRYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +K G  + F   I
Sbjct: 632 KAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSKTGIAIHFRLDI 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L +GD ++SM ++     D   +I  +               
Sbjct: 692 NELRPL-GRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT-------------- 736

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           ++  +E      ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 737 -------------EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  + + ++++LV++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGDH 841

Query: 891 VVSVERIRESEIV 903
           +  V  +   +I 
Sbjct: 842 LSEVVLVPREQIE 854



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 48/250 (19%), Positives = 99/250 (39%), Gaps = 25/250 (10%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D  V +  ++ ++  G++KR  LS +   R  G     + + D D +T + +     SVL
Sbjct: 619 DSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNG--LIAINLEDGDALTWVRLSKEGDSVL 676

Query: 591 FFSSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE-------- 640
             S  G    ++  +  L      ARG   +N+   +    +  +     D+        
Sbjct: 677 IGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVDQLAKIEDLT 736

Query: 641 ---------SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD-SRDEILSVE 688
                    +S +  +V+ A+  G  +R  ++ F    R+G    A+K     D+++ ++
Sbjct: 737 EDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRIKDDQLVCLK 796

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +  ++LL T+ G  VR     I     R + GV+   L  GD +  + +V     + 
Sbjct: 797 VLGEGEELLLVTEKGVIVRTNADKI-SQQSRAATGVKLQRLDDGDHLSEVVLVPREQIEG 855

Query: 749 DERICYMKHM 758
            ++   ++  
Sbjct: 856 KDQHGSVEQN 865


>gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3]
 gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3]
          Length = 834

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/911 (39%), Positives = 514/911 (56%), Gaps = 94/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPPPG---DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG+ AIYD L R+AQ WSLR  L++G GNFGS 
Sbjct: 58  YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 118 GNDPPAAMRYTEARMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +D+PD     L+E    +I+GPDFPT  +I+GR G
Sbjct: 178 GIAVGMATNIPPHNLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIVGRNG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI +R V ++E+    R Q+VVTE+PYQVN   + EKIAELVR+ R+  I
Sbjct: 238 IEEAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGI 296

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L 
Sbjct: 297 ADVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR 
Sbjct: 357 QMVRYYVEHQIDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 417 QLMER--------------------------FSLSEIQATAILDMQLRRLAALERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +   IL+S +R   II +EL  V ++    RRTR+V    DM  ED I +
Sbjct: 451 EAAELRAKISDLEAILASPTRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQ 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+QRRGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+  Q ERI  ++   + E      Y+V ATK G
Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFGQDERIAEVIAVKDYE---AAPYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
             ++  L DF      G +A+ L   DE+++       +D+LL ++  Q +RF      +
Sbjct: 628 LCKKTALHDFDSNRAGGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQL 687

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+     D+++SM +V+                               
Sbjct: 688 RPM-GRATSGVIGMRFDAEDELLSMDVVVPGTTAD------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +L  +  G+ KRT   ++ +  R GKG+    + 
Sbjct: 722 --------------------------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI- 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++  G LV    V+ +DQ+  ++  G ++R    ++R A R T GV +       +VV 
Sbjct: 755 -VSTRGGLVGALVVDPDDQLYAIASNGGVLRTVAKDVRRAQRQTMGVRLIDLESGVQVVG 813

Query: 894 VERIRESEIVD 904
           V R  ++E  D
Sbjct: 814 VARNADAEDTD 824


>gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
 gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS]
          Length = 809

 Score =  842 bits (2174), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 530/889 (59%), Gaps = 94/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K 
Sbjct: 5   NTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DP AA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 LAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+      +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +
Sbjct: 185 LAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HI +   +R+ I VTEIPYQVNKA ++ KIAELV+++++V I+DLRDESDRQG RVVIEL
Sbjct: 245 HIGEVD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A+DRAH+L GL  A+  +D ++ IIR S N +TAR+ LM                
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S +Q +AIL+L+L RL  L R  I +E   L   I    D+LS  
Sbjct: 410 ------------FDFSAIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++  ++K++   ++     PR T I    +++  +ED +   D++VT+S  G++KRVP 
Sbjct: 458 EKIYALVKEDAKDLRGSYGQPRATEISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPA 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612
           +V+R Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P   S  
Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRI 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + Q ERIT I+          + +++ AT  G +++  L +F  +  SG
Sbjct: 578 AKGTAIVNLIPVTQDERITAILDLKSFP---ADHFLLMATNKGEIKKTSLQEFTAVRSSG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAM L + DE+++    T+E DILL T+LGQ +RFP+S +R  + R S GV+ I L+KG
Sbjct: 635 LIAMDLATSDELVAAVETTEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSKG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +                                                    
Sbjct: 694 DEVVSMDVAQEGT----------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++TV+E G GK T+  ++   +R+G G+    V  +++ G +VA   V++ DQ
Sbjct: 707 ------LVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSETDQ 758

Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895
           ++L+S  G + R  V E      I I  RAT+GV +    + +RVV+V 
Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 99/280 (35%), Gaps = 16/280 (5%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L++   +   + + ED  S          +     R           S +  ++    D 
Sbjct: 437 LDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSYGQPRATEISNQGVIEFREED- 495

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                     + I+  ++ G   R P +  R    R   G+ G+   + D V  +++   
Sbjct: 496 -----LVPHMDVIVTLSERGFIKRVPANVFR-LQHRGGTGIMGMPTREADAVRFLSVSDT 549

Query: 744 ADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            D         ++  ++                       + +  I+     +    + F
Sbjct: 550 HDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPADHF 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  + KG  K+TS  +F        G+ A D++       LVA     +   I+L +  
Sbjct: 610 LLMATNKGEIKKTSLQEFTAVR--SSGLIAMDLAT---SDELVAAVETTEEKDILLATRL 664

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           G  IR PV+E+R + RA+ GV     +K + VVS++  +E
Sbjct: 665 GQSIRFPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQE 704


>gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1]
          Length = 836

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/916 (38%), Positives = 514/916 (56%), Gaps = 97/916 (10%)

Query: 1   MTEHIISS-----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+ I  +     D E    +  V I  EMQ SY+ YA++VI+GRA+P + DGLKPVHRR
Sbjct: 1   MTDTIDPAAPAAGDGEGGGRVEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M + G   ++ +VKCAR+ G+VMG YHPHG++AIYDAL R+AQ WS+R  LI GQG
Sbjct: 61  VLYSMGENGFRPDRSFVKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTECRL   A  +L D+ ++TVDF  NYDG  QEPVVL +R PN+L
Sbjct: 121 NFGSRGNDPAAAMRYTECRLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV  G    ++NPD   D     LME I+GPDFPT  +I
Sbjct: 181 INGSSGIAVGMATNIPPHNLREVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI++AY TGRGSI +R V  +E  +  R  +VVTE+PY VN   ++E IA +VR+ 
Sbjct: 241 VGRDGIESAYRTGRGSIRMRAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDG 300

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +I  I+++ DE SDR G R+V+ LKR A A V+LN LY++T LQ  F  NM+++    P 
Sbjct: 301 KIAGISEIVDESSDRIGMRIVVTLKRDAVAKVVLNNLYKHTQLQHSFGANMLSIVDGVPR 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  I++ +V  + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   
Sbjct: 361 TLRLDQIVRHYVRHQIEVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATV 420

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + AR  L+                            + + E+Q +AIL+++L RL  L R
Sbjct: 421 DVARAGLI--------------------------DLLTVDEIQAQAILDMQLRRLAALER 454

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I +EL  +  EI +  DIL+   R   I++ EL  + ++    RRTRIV    D+ DE
Sbjct: 455 QKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHGDDRRTRIVGYDGDVTDE 514

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +L
Sbjct: 515 DLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVNHFFVCSTHDWML 574

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP  +  ARG+ L N+L+L   E I  +M   + ++     Y+V 
Sbjct: 575 FFTNRGRVYRLKAYELPEANRTARGQHLANLLALQPDEEIAQVMQIKDYQAR---PYLVL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT++G V++++L+DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  
Sbjct: 632 ATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELVGAVLCSGDDDLLLVSAEGQSIRFTA 691

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +   +R   GR + GV G+    GD+++++ ++                           
Sbjct: 692 TDDALRPM-GRATSGVLGMRFNSGDKLLALGVIRP------------------------- 725

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       + ++L  +  G+ KRT   D+ +  R GKG+ 
Sbjct: 726 ----------------------------DTYLLVATTGGYAKRTPIEDYPVQGRGGKGVL 757

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                +    G LV    V  +D++  ++  G +IR    E+R A R TKGV + +  + 
Sbjct: 758 TLQYDRR--RGTLVGALIVGIDDELYAITSTGGVIRTSAREVRKAGRQTKGVRLMNLGES 815

Query: 889 ERVVSVERIRESEIVD 904
             +++V R  E    D
Sbjct: 816 STLLAVARNAEETEED 831


>gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 874

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/937 (37%), Positives = 522/937 (55%), Gaps = 115/937 (12%)

Query: 1   MTEHIISSDEEEEK---------------GITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M +    + +EE                  +  V +  EMQ SYL YA++VI+ RA+PD+
Sbjct: 1   MADENTPTPDEEPTGPIPGADDGAAGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS
Sbjct: 61  RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWS 120

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +R+ L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP 
Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIR 221
           VL +R+PN+L+NG  GIAVGMATNIP HNL EV  G    +++P+   + L++     I+
Sbjct: 181 VLPSRFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASNEELLDALIERIK 240

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + 
Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLA 299

Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +KIA+LV++ +I  IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N
Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV
Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR S   E AR  LM                          G + + E+Q  AILE+
Sbjct: 420 IALIRRSETVEDARGGLM--------------------------GLLEIDEIQANAILEM 453

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RL  L R  +  E + L   I E   IL+S  R   I+  EL  + D+    RR+++
Sbjct: 454 QLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFGDDRRSQL 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V    DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   
Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + +
Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIRDYD 633

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695
                 Y+V AT+ G V++  L D+      G IA+ L        DE++  E  + ++D
Sbjct: 634 ---AAPYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDELIGAELVSADDD 690

Query: 696 ILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +LL +K  Q +RF  +   +R   GR + GV+G+S   GD+++SM +V            
Sbjct: 691 LLLISKKAQSIRFTATDDTLRPM-GRATSGVKGMSFRDGDELLSMNVVRP---------- 739

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                        F+ T ++ G+ KR+ 
Sbjct: 740 -------------------------------------------GTFVFTATDGGYAKRSP 756

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             ++R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR  
Sbjct: 757 VDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQT 814

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            R T GV + +  K + VV+V R  E+    EAE  E
Sbjct: 815 GRDTMGVQLINLGKRDAVVAVARNAEAGR--EAEEVE 849



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 14/247 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+  L  Y + R GG     +   D     +L           +L  S
Sbjct: 636 PYLVLATQGGLVKKTSLKDYDSPRSGGVIAINLRETDNGADDELIGAELVSADDDLLLIS 695

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +          P  R  + +  +S   G+ + ++             +V  AT 
Sbjct: 696 KKAQSIRFTATD-DTLRPMGRATSGVKGMSFRDGDELLSMNVVR------PGTFVFTATD 748

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R+ + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 749 GGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVIRTRV 808

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + IR   GR+++GV+ I+L K D V+++A    A  + +E          Q     G  E
Sbjct: 809 NEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVEAAGPDDEPQADPAEGTAE 867

Query: 771 EITSLKN 777
                  
Sbjct: 868 GTEPSAE 874


>gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
 gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641]
          Length = 870

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/893 (39%), Positives = 529/893 (59%), Gaps = 86/893 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E    S  E    +    +  +M+ S++ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +
Sbjct: 31  ETTGESTYESASQVLPADLGQQMRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNE 90

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+  N+ + K AR  G+V+GKYHPHG+ A+YD + RMAQ +S+ + L++G GNFGS+DG
Sbjct: 91  SGILPNRPHAKSARTVGDVIGKYHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDG 150

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL + A  LL DL K+TVD++PNYD S +EP VL AR+PN+LVNG  GI
Sbjct: 151 DSAAAMRYTEARLARPAMELLRDLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGI 210

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNL EV+D    VIDNPD+ LD L++++ GPDFPTGA I+GR GI+ AY 
Sbjct: 211 AVGMATNIPPHNLAEVIDATCLVIDNPDVSLDELLKVMPGPDFPTGATIMGREGIREAYE 270

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R    I +T   R  I V EIPY VN+  +LEKI EL+R+K++ +I+++ D 
Sbjct: 271 TGRGSMTLRAKCEISQTKRGRSIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHDG 330

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +DR G  ++IELK+ A   V+LN+LY++T +Q+ F  NM+AL    P   +L  IL  ++
Sbjct: 331 ADRHGIDIIIELKQNAIPQVVLNKLYKHTQMQTTFGANMLALVDDVPHTLSLKQILSYYI 390

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A + +V+ RRT+Y L KA +RAH++ GL IA+ N+DEV+ IIR S   + AR  L++   
Sbjct: 391 AHQIDVITRRTRYDLQKAEERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIE--- 447

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L E+Q  AILE+RL RLTGL  D +  EL  L  
Sbjct: 448 -----------------------NFNLDEIQANAILEMRLRRLTGLEYDKLVEELRDLEE 484

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVT 541
            I     +L   + +  IIK+E+  +K +  + RRT+I      D++ ED I  EDMVVT
Sbjct: 485 RIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDIDVEDLIADEDMVVT 544

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  GYVKR+PL+ YR Q+RGGKG  GV ++++DFV  LF+ STH  +LFFSS G VY+ 
Sbjct: 545 VTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHLFVASTHAYMLFFSSKGKVYRL 604

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV+ LP     ARG A++N+LSL +GE I  ++   +        Y++FAT  G V++  
Sbjct: 605 KVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDFP---KEEYLMFATSAGMVKKTS 661

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +S + +  R G IA+ L+  DE++SV+  +    + + +  G+ + +  S  R   GR++
Sbjct: 662 MSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSAGKAIVWDESEARAM-GRDT 720

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ +   + V+ M+I                                         
Sbjct: 721 KGVRGMKVPADEHVLEMSIAKPQAD----------------------------------- 745

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +  ++EKG+GKRTS Y++ + +R G+G+    +++  + G L
Sbjct: 746 ------------------LFVITEKGYGKRTSVYEYPLHHRGGQGVYTITMTR--KKGEL 785

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            A   V D++++I+++++G ++R PV  +    R+T+GV I +    ++V +V
Sbjct: 786 AAAKIVTDDEELIIITNEGVVVRTPVKGVSKLGRSTQGVRIMNVVDKDKVRAV 838



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 92/241 (38%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLA 730
           + LD+ DE++ +   ++ +      +      F +  I+         R   G+      
Sbjct: 420 IALDNIDEVIHIIRSSKTD---KEARDRLIENFNLDEIQANAILEMRLRRLTGL------ 470

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D+++     +                     +  +    ++ +S +       +  + 
Sbjct: 471 EYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFSSKRRTQIQRASAKDI 530

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L   E  ++TV++ G+ KR     +R   R GKG++  ++ + + +  L   F  +
Sbjct: 531 DVEDLIADEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEHL---FVAS 587

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +  ++  S KG + R+ V E+  A R  +G   V + S  K E + +V  I   +   E
Sbjct: 588 THAYMLFFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAV--IATKDFPKE 645

Query: 906 A 906
            
Sbjct: 646 E 646



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 15/240 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +E+ ++  +  G VK+  +S+Y   RR G     + + D D +  +  VS    V   
Sbjct: 642 FPKEEYLMFATSAGMVKKTSMSLYDRTRRDG--LIAINLNDGDELISVKRVSDGEKVFMV 699

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G       W         R    +  + +   E         E   +     +   T
Sbjct: 700 SSAGKAIV---WDESEARAMGRDTKGVRGMKVPADEH------VLEMSIAKPQADLFVIT 750

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL---DSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  + ++   +R G+    +     + E+ + +  T + ++++ T  G  VR P
Sbjct: 751 EKGYGKRTSVYEYPLHHRGGQGVYTITMTRKKGELAAAKIVTDDEELIIITNEGVVVRTP 810

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +    GR++ GVR +++   D+V ++ I         +R+                 
Sbjct: 811 VKGV-SKLGRSTQGVRIMNVVDKDKVRAVGIADDGKGRKHKRVGGKTDDLDIDVDGDEGD 869


>gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
 gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF]
          Length = 846

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/900 (43%), Positives = 557/900 (61%), Gaps = 68/900 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K IT V I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G  WNK
Sbjct: 2   NDRAKEITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD + RMAQ + +R +LI+GQGNFGSVDGD  AA R
Sbjct: 62  NYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K ++ LL DL K+TVD+  NYDG+ + P VL AR PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EVV+GC+A IDN +I +D LM+ I GPDFP+ AVI   + +K AY TG+G I 
Sbjct: 182 IPPHNLSEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSELKKAYETGKGKIY 241

Query: 250 IRGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  +         RE I+V EIPYQVNK+ +LEKIAELV+ KRI  I  LRDESD+ G 
Sbjct: 242 IRARAEINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVI++K  A ++++LN LY  T LQ  F +NMVAL+  +P+  +L  IL AF+  R  V
Sbjct: 302 RVVIDIKHDAISEIVLNNLYSLTQLQVSFGINMVALHHGQPKVMSLKDILSAFICHRRSV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR  + L KA +R HVL GL IA++N+D V+ +IR S +   A   L  +SW A+D+ 
Sbjct: 362 ITRRILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVT 421

Query: 429 DLIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++   I                 +   Y ++ Q RAIL+LRL +LT L  D +  E +SL
Sbjct: 422 NMRKSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             ++++ +  L ++S L+ +I+QEL+S+K+E    RRT I   +  ++ E+ I + D+VV
Sbjct: 482 LKKMEKLIFTLKNKSSLMDVIRQELVSIKEEYSDIRRTEINNTIPSIDVENLINQRDVVV 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GYVK  PL+ Y AQ+RGGKG+    +++EDF+T L I +TH +VL FS+ G +Y 
Sbjct: 542 TLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNYGRIYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP     +RG+ +IN+L L+  ERITTI+P  +         V  AT  G V++ 
Sbjct: 602 MKVYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQKYT---KGHQVFMATSSGFVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +    G IA+ L+  DE++  +     N+++L T  G+ VRF  + +R   GR+
Sbjct: 659 ALMEFSRPRNVGIIALNLNVGDELIGADVTDGNNEVMLFTAYGKVVRFKETQVRSM-GRS 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           +VGV+GI L +GD+V+S+ I  +  +                                  
Sbjct: 718 AVGVKGIHLLQGDRVVSLIIPKNKSS---------------------------------- 743

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILT+++ GFGKRT   ++ + +RS KG+ +  V++ N  G 
Sbjct: 744 -------------------ILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERN--GN 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V+ +DQI++++D G L+R+ V+E+ I  R TKGV++  TA DE VV ++R+ ES
Sbjct: 783 VVGAVQVSHDDQIMIITDAGRLVRIRVSEVNIIKRNTKGVMLIRTACDEHVVGLQRVVES 842



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 70/467 (14%), Positives = 152/467 (32%), Gaps = 47/467 (10%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +     +D    R  I +    S  +  N   +        +     L+           
Sbjct: 412 SQSWRANDVTNMRKSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLR--------- 462

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L        + ++     LL K       L   +  +  + + +  I+   +    RR 
Sbjct: 463 -LHKLTTLEHDKLLVEYDSLLKKMEKLIFTLKNKSSLMDVIRQELVSIKEEYS--DIRRT 519

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRA----------ILELRLAR 464
            +  +  + D+++LI+  D            Y  L++ + +           I E     
Sbjct: 520 EINNTIPSIDVENLINQRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFIT 579

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
              +        L S    I   + +            + ++++       R T I+   
Sbjct: 580 QLLIANTHDTVLLFSNYGRI-YWMKVYRLPEVKRSSRGRPIINLLPLDVNERITTILPIQ 638

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
              +          V   +  G+VK+  L  +   R  G     + + DE    D+    
Sbjct: 639 KYTKGH-------QVFMATSSGFVKKTALMEFSRPRNVGIIALNLNVGDELIGADV--TD 689

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            +  V+ F++ G V + K  ++      A G   I++L  ++                 N
Sbjct: 690 GNNEVMLFTAYGKVVRFKETQVRSMGRSAVGVKGIHLLQGDR---------VVSLIIPKN 740

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTK 701
              ++  TK+G  +R   S++   +RS K  + +   +     +     + ++ I++ T 
Sbjct: 741 KSSILTITKNGFGKRTDQSEYPLKSRSTKGVISIKVTERNGNVVGAVQVSHDDQIMIITD 800

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
            G+ VR  +S + +   RN+ GV  I  A  + V+ +  V+ +    
Sbjct: 801 AGRLVRIRVSEVNIIK-RNTKGVMLIRTACDEHVVGLQRVVESVDSN 846


>gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii]
          Length = 857

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/899 (42%), Positives = 546/899 (60%), Gaps = 87/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE +   ++ IV+ E+PYQVNKA ++E+IA+L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIE-SKSKKDVIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N + A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q +AIL++RL RLTGL RD +  E   L I I +   IL
Sbjct: 414 ---------------FGLSAIQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  RL  IIK+EL  +K++   PRRT I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEDRLNEIIKEELNEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + +       + F TK+G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTSDFD---EAKSLTFFTKNGIVKRTSLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +  T     +++ T LGQC+RF +   R   GR++ GVR I   
Sbjct: 636 GVRAIVLDDDDEIVTAKIATVDTKYLMVFTSLGQCIRFEVDKARE-QGRSTRGVRAIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   I+   D                                            
Sbjct: 695 IDSDIVVDAEIIDSED-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ A  +S   + G ++    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
              ++L++  G +IRV +  IR A R T GV+I +  KD++VVS+ +  + +   E + 
Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNMDKDDKVVSIAKCPKEDEEIELDE 819


>gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
 gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9]
          Length = 830

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/882 (40%), Positives = 518/882 (58%), Gaps = 59/882 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ GEV+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA-AHFLLDDLGKDTVD 152
           YDAL RMAQD+S+R  LI G GNFGS+D DPPAA RYTECRLQ   +  LL D+  +TVD
Sbjct: 61  YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP HNLGE++DG VA+I NP+I 
Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR----EQIVV 268
              LM+ + GPDFPTGA ILG + IK AY TGRGSI +RGV+ IE          E I++
Sbjct: 181 DTQLMQYVHGPDFPTGAQILGTSAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAIII 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQ NKAA++EKIAELV +K+I  IAD+RDESDR G R+VIELKR +   V+LN LY
Sbjct: 241 TELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSYPRVVLNNLY 300

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           + T LQ+ F  NM+AL   +P+  TL   L  F+ FR E + RRT+Y L KA +R H+L 
Sbjct: 301 KQTPLQTNFGANMLALVNGEPQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDHLLQ 360

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL IA+A+LD ++ +IR +P+  TA+ EL+                           +  
Sbjct: 361 GLLIALAHLDSIINLIRNAPDAPTAKGELI--------------------------NSYG 394

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           LSEVQ  AIL+++L RLT L  D IR E   L ++I +  DIL  R R+L II+ E   +
Sbjct: 395 LSEVQADAILQMQLRRLTALEADKIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQI 454

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K +  TPRRT I     +++D D I  E +++ ++  GY+KR+P+S + +Q R  +G++G
Sbjct: 455 KTQFTTPRRTTITHAEGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAG 514

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++++D +        H SVLFFS  G VY  K +++P GS  +RG  ++ +L + + E
Sbjct: 515 AKVKEDDTIEHFLTCCDHDSVLFFSDRGVVYSLKAYQIPEGSRTSRGTPIVQMLPIPKEE 574

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           +IT+I+   E     +  Y+V  TK GN+++  L  F  I  +G IA+ L+  D++  V 
Sbjct: 575 KITSIVSVSEFS---SEEYLVMLTKGGNIKKTALEAFSNIRANGLIAISLEEGDQLRWVR 631

Query: 689 TCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               E+ +++ ++ G  + F      +R   GR + GV+ + L  GD++I M I+  A  
Sbjct: 632 RAKPEDSVMIGSRQGMAIHFRCDNDQMRPL-GRATRGVKSMKLKTGDELIGMDILPAAIL 690

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +        +    +    + +                              ++L ++  
Sbjct: 691 NTLNTEMEEELTEVEETSDNIEETSNIL----------------------GPWVLIITIG 728

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKR     FR+ NR+G+G+ AT          L  +  VN +++I++ +++G +IR  
Sbjct: 729 GYGKRVPVGQFRLQNRAGQGLTATKFKNRKTKDQLATLRIVNPDEEIMMATNRGIIIRQS 788

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +N I I SR   GV +    +D+ +  V  +       E   
Sbjct: 789 INAISIQSRTATGVRVQKLDEDDAITGVAVVPPDAGDGEESE 830


>gi|1346235|sp|Q07702|GYRA_MYCTU RecName: Full=DNA gyrase subunit A
 gi|466275|gb|AAA83017.1| gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 838

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+  +D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLVSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|326383915|ref|ZP_08205599.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
 gi|326197374|gb|EGD54564.1| DNA gyrase subunit A [Gordonia neofelifaecis NRRL B-59395]
          Length = 832

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/917 (37%), Positives = 507/917 (55%), Gaps = 93/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +      I  V +  EMQNSY+ YA++VI+GRA+P++RDGLKPVHRR+L+  
Sbjct: 1   MSDETDLPENNGGDRIEPVDLGQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   E MG YHPHG+++IYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  FDAGFRPERGYVKSARPVSETMGNYHPHGDSSIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  +L D+ ++TVDF PNYDG  QEP VL +R PN+L+NG G
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDITEETVDFVPNYDGKTQEPTVLPSRIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D     ++NP    +  L A ME+++GPDFPT A+I+G  G
Sbjct: 181 GIAVGMATNIPPHNLNEVADAVFWALENPEADEETTLAACMEVVKGPDFPTAALIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE+      Q++VTE+PYQVN   ++  IAE V + ++  I
Sbjct: 241 IRDAYMTGRGSIRMRSVVDIEEVK-GTTQLIVTELPYQVNPDNLISSIAEQVNDGKLKGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+VI L+R   A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SKIEDQSSDRAGLRIVITLRRDGVARVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S N E AR 
Sbjct: 360 QMIRYYVAHQIDVIIRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL+ L R  I +
Sbjct: 420 GLM--------------------------DLLDIDEIQADAILAMQLRRLSALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  V D+    RRTRI+    D+ DED I R
Sbjct: 454 ELAEIEREIADLKDILERPERQRAIVRDELKEVVDKYGDDRRTRIIPAEGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVSSTHDWLLFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIRISGYE---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL  F      G  A+ L   DE++    C+ ++D+LL +K GQ +RF      +
Sbjct: 631 LVKKSKLDAFDSNRSGGIAAINLRGDDELVGARLCSADDDLLLVSKKGQSIRFTADDETL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRQTSGVQGMRFNDDDELLSLTVVRP------------------------------ 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + F+L  +  G+ KRT   ++    R GKG+      
Sbjct: 720 -----------------------DTFLLVATSGGYAKRTDIEEYSAQGRGGKGVLTIQHD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV    V+ + +I  ++  G +IR    ++R A R TKGV + + +  + +++
Sbjct: 757 P--KRGDLVGALVVDIDSEIYAITSGGGVIRTKAKQVRKAGRQTKGVRLMNLSDGDNLIA 814

Query: 894 VERIRESEIVDEAESTE 910
           + R  +    DE  + +
Sbjct: 815 IARNADEPDEDEGAADD 831


>gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
 gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638]
          Length = 817

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/896 (41%), Positives = 543/896 (60%), Gaps = 86/896 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G  +N+ Y K AR+
Sbjct: 3   QITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSARV 62

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 63  VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARMSK 122

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +   L DL K TVDFR NYD S QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 123 LSSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 182

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++G V ++DNP+ +++ LM+ I+GPDFPTGA+  G  G++ AY TGRGSI IRGV +IE
Sbjct: 183 LINGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGKGLREAYLTGRGSIKIRGVVNIE 242

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +    R+ IV+TEIPY +NK++M+EKIA+LV E +I  ++DLRDESDR+G RVV++LK+G
Sbjct: 243 EKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLKKG 302

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A AD+I+N LY++T L+  F +NM+A+N  +P+   L  IL AF+  R EV++RRT++ L
Sbjct: 303 AIADIIINSLYKFTQLEQSFGINMMAVNANRPQLMNLKQILAAFLEHRREVIIRRTRFDL 362

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           +K   RAH+L GL IA+ N+DEVV+IIR S N + AR  LM R                 
Sbjct: 363 DKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDR----------------- 405

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LS+VQ +AIL++RL RLT L  + +  E   +  +I+    IL++   L
Sbjct: 406 ---------FELSKVQAQAILDMRLQRLTNLEHEKLLEEYAEILKKIEYFKSILANEEVL 456

Query: 498 LGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G+I+ EL+ +KD   T R+T  +     D++ ED I  +D V+T+S  GY+KR PLS Y
Sbjct: 457 KGVIRDELVEIKDNYATERKTVLMDHNPDDIDIEDLIPDDDAVITLSRRGYIKRTPLSNY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q+RGGKG +GV  +D DF+      S H  +L F+S G ++K KV ++P  S  ARG 
Sbjct: 517 QKQKRGGKGIAGVQTKDGDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIARGA 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L + E I T M   E E     L+V   TK G ++R+ ++ +    +SG  A+
Sbjct: 577 HIANLLPLEKDETIATAMTMREFEEECFFLFV---TKSGMIKRSSIALYRNCRQSGIRAV 633

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   D +++V+  + +++ +L T+ G  +RF     R   GR + GV+GI+L  GD+V+
Sbjct: 634 ALKEGDALITVKEVSADSEAVLVTRNGTSIRFSCQDARAM-GRVASGVKGIALRPGDEVV 692

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S  +    +                                                   
Sbjct: 693 SGVVTGDEERVQ------------------------------------------------ 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LT+SE G+GKRT     RI  R GKGI +  V+   + G ++    V+  D+++L+
Sbjct: 705 ---LLTISEGGYGKRTDIDQHRIQTRGGKGIISMRVTT--KTGKVLGSIMVSPEDEVVLL 759

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE--SEIVDEAESTE 910
           +    +IR+ V ++ +  RAT+GV +      + VV  + +++   EI  E E  E
Sbjct: 760 TSGNKIIRMGVKDVSLVGRATQGVRLVRMDDGDHVVGFDLVQDANEEITSEPEGEE 815


>gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
 gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM]
 gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796]
          Length = 824

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/908 (39%), Positives = 539/908 (59%), Gaps = 88/908 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM+ I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDERRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++  ++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPIVNLLQLEKGEKVQAVVNIPEGA---DDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T     +IL+ T LG  V F  S +R   GR + GV
Sbjct: 632 FANIRNSGLIALTLRDGDELSNVLTTDGNQNILIGTHLGYAVTFNESDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRPEDYVVGSGVL------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 708 ----------GANDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             ++ ++ I++++  G +IR    ++   SR+T GV +     D RV S+  +      D
Sbjct: 756 IVLDSDEDIMVITTDGIMIRFKTADVSQTSRSTIGVRLIKVNDDSRVASLTIVPTEAEQD 815

Query: 905 E--AESTE 910
           E   E +E
Sbjct: 816 EIGDEDSE 823


>gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132]
 gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132]
          Length = 815

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/888 (40%), Positives = 536/888 (60%), Gaps = 86/888 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M  +G  +N+ Y K AR+ 
Sbjct: 5   ITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL R+AQD+S+R  L++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMARL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
               L D+ K+TVDF PNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 125 CSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG V ++DNP+  +++LM+ I+GPDFPTG  I G  G+ +AY TGRGSI IRGV  +E+
Sbjct: 185 IDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGGQGLIDAYTTGRGSIKIRGVVELEE 244

Query: 259 TSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                 E I++ EIPY +NK+ ++EKIA LV EK+I  +ADLRDESDR+G R+V+ELKRG
Sbjct: 245 ARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELKRG 304

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A AD+I+N LY++T L++ F +NM+A+ G +P    L  +L  F+  R EV++RRTK+ L
Sbjct: 305 AIADIIINSLYKFTPLETSFGINMMAVVGKRPMLLNLKEVLGHFLEHRREVIIRRTKFDL 364

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           +K   R H+L GL IA+ N+DEVV++IR S  PE AR  LM R                 
Sbjct: 365 DKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSR----------------- 407

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LS++Q +AIL++RL +LTGL  D +  EL  L  +I+    ILS+   L
Sbjct: 408 ---------FSLSDIQAKAILDMRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEVL 458

Query: 498 LGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G+I+ EL  +K    TPR++ ++   L  ++ ED I  E+ V+T+S  GY+KR PLS Y
Sbjct: 459 KGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSNY 518

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            AQ+RGGKG +GV   D DF+    + + H  ++ F++ G ++K KV ++P GS  A+G 
Sbjct: 519 TAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGG 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L++ E I T +   E     ++ + +F TK G ++R+ +  +     +G  A+
Sbjct: 579 HVNNLLPLDKDEHIATCLSLREFA---DDRFFLFVTKKGMIKRSSIGLYGNCRTTGIRAV 635

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V     E D +L ++ G  +RF I+  R   GR + GV+G++L   D+V+
Sbjct: 636 NLRDHDELMDVREIEPEVDCILVSREGSAIRFNINDARPM-GRATAGVKGMALRPNDEVV 694

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  +    + D                                                 
Sbjct: 695 ACVVTGDQERDQ------------------------------------------------ 706

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LTVSE G+GKRT+   +R+  R GKGI    ++  N+ G +V    VN++D +IL+
Sbjct: 707 ---LLTVSEGGYGKRTTIDQYRVQTRGGKGILNMRLT--NKTGMVVGACMVNESDDVILL 761

Query: 857 SDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + +  +IR+ V+E+     RAT+GV +     D +V+  + + + +  
Sbjct: 762 TSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDNKVIGFDLVMDDDED 809



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 129/380 (33%), Gaps = 25/380 (6%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L          +    A     E++R    S + E    +  + +      +  I     
Sbjct: 458 LKGVIRDELNEIKTNYATPRKSELLRADLDSIDIEDLIPD--EETVITLSRRGYIKRTPL 515

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           S+YT    G   ++ VQT     +    LT   +  +         +IK       SR  
Sbjct: 516 SNYTAQKRGGKGIAGVQTGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYA 575

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
             G +   L   KDE      +                 +   + V+  G +KR  + +Y
Sbjct: 576 KGGHVNNLLPLDKDEHIATCLSL-----------REFADDRFFLFVTKKGMIKRSSIGLY 624

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
              R  G     V +RD D + D+  +      +  S  G   +   + +    P  R  
Sbjct: 625 GNCRTTG--IRAVNLRDHDELMDVREIEPEVDCILVSREGSAIR---FNINDARPMGRAT 679

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A +  ++L   + +   +   +         ++  ++ G  +R  +  +    R GK  +
Sbjct: 680 AGVKGMALRPNDEVVACVVTGD----QERDQLLTVSEGGYGKRTTIDQYRVQTRGGKGIL 735

Query: 677 KLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +   ++    +      + +D++L T   + +R  +S +    GR + GVR + +   +
Sbjct: 736 NMRLTNKTGMVVGACMVNESDDVILLTSQNKIIRMSVSEVSQTRGRATQGVRLVRMDDDN 795

Query: 734 QVISMAIVLHADADYDERIC 753
           +VI   +V+  D D  E   
Sbjct: 796 KVIGFDLVMDDDEDLGEVQA 815


>gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279]
 gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279]
          Length = 806

 Score =  841 bits (2173), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/890 (41%), Positives = 531/890 (59%), Gaps = 87/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  V ITDE++ S++ YA++VI+ RA+PD+RDGLKPV RRIL+G  Q GV  ++K+VK
Sbjct: 2   SQVLPVEITDEVKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA+I GEVMGK+HPHG+AAIYD L R+AQ W+LR  LI+GQGNFGSVDGDPPAA+RYTE 
Sbjct: 62  CAKIVGEVMGKFHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL      LL DL K+TV F PNYDG+ ++P VL A  PN+LVNG  GIAVGMAT++P H
Sbjct: 122 RLSNIGLELLQDLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  V +IDNP++ L+ +M+++ GPDFPTGA +  R GIK AYATGRGS+ +R  
Sbjct: 182 NLGEVVDALVLMIDNPEVTLEEVMKVLPGPDFPTGAKLS-RRGIKEAYATGRGSLKVRAR 240

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E     R  +V TEIPYQVNKA ++ +IA LVR K I +IA LRDESDRQG R+ +E
Sbjct: 241 VRNED-KNGRAMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA+  V+LN+LY+++ LQ+ F+VN++A+   +P+  TL+ +++ ++  R  VV +RT
Sbjct: 300 LKRGANPQVVLNKLYKHSRLQTSFTVNLLAIVKGEPKVLTLLELMRHYLDHRGLVVRKRT 359

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KAR+RAHVL GL IA+ ++DEV+ +IR S +   AR  LM               
Sbjct: 360 EYELRKARERAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLM--------------- 404

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                      G   L+EVQ +AIL++RL RL GL RD ++ E   L  EI     IL  
Sbjct: 405 -----------GRFSLTEVQAQAILDMRLQRLVGLERDKLQAEYRELMEEIGRLEAILGD 453

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL  +++ ELL++KD+    RRT+I E       ED I  E MV+T++  G+VKR PL
Sbjct: 454 EKRLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTPL 513

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG G      ++ED    +F+ S H ++L F++ G VY EKV  LP  S QA
Sbjct: 514 EAYRAQGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASRQA 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  ++++L L +GE +  ++   +        Y VFATK+G +++ ++ ++  ++ +G 
Sbjct: 574 RGTHIVSLLPLQEGEEVAALLNVRDLT---QEGYFVFATKNGLIKKTEIKEYQNLSSAGL 630

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ L   D ++ V    + + ++L T+ GQ +RF +S +R   GR S GV GI   +G 
Sbjct: 631 IAINLLENDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRA-TGRASQGVTGIRFKEGR 689

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+S+ I+   +                                              
Sbjct: 690 DDRVVSLVILPKGE---------------------------------------------- 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  +L V   G+GKRT   ++ +  R G G+   + ++  ++G L A+  V  N+
Sbjct: 704 -----ESEVLAVGSHGYGKRTPISEYPLQGRGGMGVITFNTNE--KVGQLAALMRVQGNE 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            ++++S +G  IR  V+ I    RAT GV + + +  + + S   I   +
Sbjct: 757 DLLVLSRRGNAIRTKVSSIAQYGRATSGVRVMNLSDKDEIASAFVIAPQD 806



 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 96/260 (36%), Gaps = 22/260 (8%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVE-----------TCTQENDILLTTKLGQCVRFP 709
                 ++ R   +A+K    D+  +                 E  ++  T  G   R P
Sbjct: 453 DEKRLWRVVRDELLAIKDKYGDQRRTQITEFEEGFSLEDLIEDEPMVITLTSQGFVKRTP 512

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLIS 766
           + A R   GR  +G +     + D+ IS+ +    D      +    Y + +        
Sbjct: 513 LEAYRA-QGRGGMGAQAGKTKEEDEAISVFVASMHDTLLIFTNRGRVYGEKVHELPEASR 571

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                             ++         +E + +  ++ G  K+T   ++   N S  G
Sbjct: 572 QARGTHIVSLLPLQEGEEVAALLNVRDLTQEGYFVFATKNGLIKKTEIKEY--QNLSSAG 629

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A ++ +     ALV V    + DQ++L +  G  IR  ++++R   RA++GV      
Sbjct: 630 LIAINLLE---NDALVGVAIAQEGDQVMLATQSGQAIRFELSDVRATGRASQGVTGIRFK 686

Query: 887 K--DERVVSVERIRESEIVD 904
           +  D+RVVS+  + + E  +
Sbjct: 687 EGRDDRVVSLVILPKGEESE 706


>gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
 gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270]
          Length = 809

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/890 (41%), Positives = 554/890 (62%), Gaps = 89/890 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D E +  I  V I  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M  +G+  
Sbjct: 2   ADIENKMNIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +R+ GEVMGKYHPHG++AIYDA  R+AQD++LR  L++GQGNFG++DGD  AA
Sbjct: 62  DKPYKKSSRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+QK A  +L D+ KDTVDF PNYD + +EPVVL +++PN+LVNG  GIAVGMA
Sbjct: 122 PRYTEVRMQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV+D     IDN DI +D LM+ ++GPDFPTGA I+G  GIK AY TGRG 
Sbjct: 182 TNMPPHNLNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIMGLEGIKQAYHTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V++IE+   ++ +I+VTEIPYQVNK  ++ KI EL+++KRI  I+DLRDES+ +G
Sbjct: 242 ITVRAVANIEEH-NNKTRIIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKG 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ ++ILN LY++T +Q+ F V  +AL   +P+   L  ++  +V  + +
Sbjct: 301 IRIVIELKRDANPNIILNNLYKHTQMQTTFGVINLALVNGEPKVLNLKELIGHYVEHQRD 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR ++ L KA DRAH++ GL  A+ ++DE+++IIR S +   A+ +LM+R       
Sbjct: 361 VITRRCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYS--DAQEKLMER------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +++Q  +ILE+RL RL GL R+ +++E NSL  EI   
Sbjct: 412 -------------------FGFTKIQAESILEMRLRRLQGLEREKLQDEYNSLIKEIARL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL +   +L IIK+EL+ +K++    RRT I     ++E E+ I  ED+V+T++  GY
Sbjct: 453 KEILGNERLILNIIKEELIEIKEKFGDDRRTEIKPNFDEIEIEELIKEEDVVITLTKQGY 512

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   Y+ Q RGGKG   +  +++D+V  LF+ STH+ +LFF++ G VYK K + +P
Sbjct: 513 IKRIPSDTYKVQNRGGKGVVALTTKEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIP 572

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  QA+G+ +IN+L L  GE++  ++P  +   + ++ Y++ ATK G ++R  +  F  
Sbjct: 573 EGKRQAKGQNIINLLELMHGEKVNAVIPVKD---AGSDEYLIMATKKGTIKRTSVELFKA 629

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I + G  A+ L   DE++ V   T E+  +L TK G  ++F +S IR   GR   GVRGI
Sbjct: 630 IRKVGMKAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREI-GRTGQGVRGI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D+V+SM +                                               
Sbjct: 689 KLDKDDEVVSMNLASEG------------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + +L +SE G+GKRT + ++++ NR GKG++   V+  ++ G +V+   V
Sbjct: 706 ----------KHLLVISEYGYGKRTLASNYKVQNRGGKGVKTYKVT--DKTGFVVSSKMV 753

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVER 896
           N +D+II+++  G +IR+ V +I +  R T+GV+I    KD +++V+V +
Sbjct: 754 NPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAK 803



 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 81/240 (33%), Gaps = 13/240 (5%)

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL--LSVKDELDTPRRTRI 520
            +  G    ++   ++   +     +    S   L+   K+     +  +     R+  +
Sbjct: 576 RQAKGQNIINLLELMHGEKVNAVIPVKDAGSDEYLIMATKKGTIKRTSVELFKAIRKVGM 635

Query: 521 VEGLLDMEDEDCIVR----EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
               L  +DE   VR    ED  + V+  G   +  LS  R   R G+G  G+ +  +D 
Sbjct: 636 KAINLVDDDELIQVRVSTVEDSAMLVTKKGLAIKFELSDIREIGRTGQGVRGIKLDKDDE 695

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           V  + + S    +L  S  G+  +       + +   +G                T    
Sbjct: 696 VVSMNLASEGKHLLVISEYGYGKRTLASNYKVQNRGGKGVKT-------YKVTDKTGFVV 748

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                + ++  +V A   G +R       ++   +  + +K  ++DE   V      ND+
Sbjct: 749 SSKMVNPSDEIIVLAQSGGIIRLLVKDIPVKGRDTQGVIIKDVNKDEDKIVAVAKYVNDV 808


>gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 814

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/891 (42%), Positives = 522/891 (58%), Gaps = 88/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I SV I ++M+ +YL YA++VI+ RA+PD RDGLKPVHRRIL+ M  MG+  N  Y K A
Sbjct: 6   IQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+YDA+ARMAQD+S+R  LI+GQGNFGS+DGD PAA RYTE RL
Sbjct: 66  RIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF  N+DG+ +EPVVL AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 126 NPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDI----DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            EV      +I+N D       + LM II GPDFPTG +I+GR GI + Y+TGR  + +R
Sbjct: 186 REVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIVGREGILHGYSTGRSRLTVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV+ IE+  G R  I++TEIPYQVNKA ++E+IAELVRE ++ +I+DLRDESDR G  +V
Sbjct: 246 GVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMSIV 305

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+RGA    +LNQLY+YT LQS FSVNM+AL   +P    L   L+ F+  R+EV+ R
Sbjct: 306 IELRRGAQPRQVLNQLYKYTPLQSTFSVNMLALVDNEPRLLPLKRALQVFIQHRQEVLTR 365

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KAR RAH+L GL IA+ANLD V+ IIR SP+ ETAR+ L++R           
Sbjct: 366 RTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIER----------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+EVQ +AIL+++L RL  L R  I +E   +   I    D+L
Sbjct: 415 ---------------FKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLL 459

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++  ++L +I+ ++  + ++    RRTRI  E   D  +ED +  E +++T++  GY+KR
Sbjct: 460 ANPRKILALIQTDMKELAEKYGDNRRTRIAAEAKEDFSEEDLVADEAVLITLTARGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V  S YR Q RGGKG  G  +++ED +T +    T  ++LFF+  G VY +K  ++P   
Sbjct: 520 VNASAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAG 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              +G   IN+L+L   ERIT  +         +  Y + AT +G V+R  LS+F  +  
Sbjct: 580 RTDKGIPAINVLALEANERITVAVAVRSFA---DARYCLMATVNGKVKRVDLSEFESVRP 636

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L++ D++  V        +LL T+ G  VRF  S +R   GR + GV GISL 
Sbjct: 637 SGLIAISLENGDQLGWVRLTDGSRHVLLVTEQGYTVRFAESEVRSM-GRQASGVTGISLR 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V SM IV                                                 
Sbjct: 696 EGDRVASMDIVEEGGG-------------------------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V+ KGFGKR    +F +  R+  G+ A D   I + G L     V +N
Sbjct: 712 ---------LLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAKTGKLAVARVVQEN 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           D++ L S  G  +RV V+ I    R  +GV I    + + V S+ RI + E
Sbjct: 763 DEVALFSASGVALRVKVSSIPFKGRVAQGVSIMHLDEGDSVASIARIPQEE 813



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 70/426 (16%), Positives = 147/426 (34%), Gaps = 40/426 (9%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              +  +K        IL   +     +  ++ +    +  +R   L  L   +AN  ++
Sbjct: 409 QRLIERFKLTEVQAQAILDMQLRRLAALERQKIEDEYREVTERIAYLEDL---LANPRKI 465

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +I+        +    +R+  A    +  +   +          + L+       +  
Sbjct: 466 LALIQTDMKELAEKYGDNRRTRIA---AEAKEDFSEEDLVADEAVLITLTARGYIKRVNA 522

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK-DELDTPRRTR 519
              R    G   +  +      EI   L   +  + L    + ++ + K  ++    RT 
Sbjct: 523 SAYRTQNRGGKGVIGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTD 582

Query: 520 IVEGLLDMEDEDCIVREDMVVTV--------------SHLGYVKRVPLSVYRAQRRGGKG 565
                  +        E + V V              +  G VKRV LS + + R  G  
Sbjct: 583 KGIP--AINVLALEANERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLI 640

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
              +   D+     L        VL  +  G+  +     +     QA   + +  +SL 
Sbjct: 641 AISLENGDQLGWVRL--TDGSRHVLLVTEQGYTVRFAESEVRSMGRQA---SGVTGISLR 695

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD--- 682
           +G+R+ ++              ++  T  G  +R +L +F+   R+    M LD +    
Sbjct: 696 EGDRVASMDIVE------EGGGLLLVTTKGFGKRVRLDEFVLKGRAIGGVMALDHKAIAK 749

Query: 683 --EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             ++       + +++ L +  G  +R  +S+I  F GR + GV  + L +GD V S+A 
Sbjct: 750 TGKLAVARVVQENDEVALFSASGVALRVKVSSI-PFKGRVAQGVSIMHLDEGDSVASIAR 808

Query: 741 VLHADA 746
           +   +A
Sbjct: 809 IPQEEA 814


>gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
 gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338]
          Length = 831

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/903 (40%), Positives = 519/903 (57%), Gaps = 96/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +      E   I  V I  EMQNSY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTETLPP----EHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVKC+R+ G+VMG YHPHG+++IYD L R+AQ WS+R  LI+GQGNFGS 
Sbjct: 57  YDSGYRPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L D+ +DTVDF  NYDG  QEP VL AR PN+LVNGGG
Sbjct: 117 GNDPAAAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV DG V  ++NP+ D    L+AL+E I+GPDFPT  +I+G   
Sbjct: 177 GIAVGMATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGTNA 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V  +E+ +  R  +VVTE+PYQVN   ++E IA + RE ++  I
Sbjct: 237 IADAYRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+ DES+ R+G R+VI LKR +   V+LN LY++T LQ  F VNM+AL    P    L 
Sbjct: 297 SDIADESNSRRGMRIVITLKRDSIPKVVLNNLYKHTQLQYTFGVNMLALVEGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 357 QVIRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDART 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + EVQ  AILE++L RL  L R  I +
Sbjct: 417 GLIE--------------------------LLEVDEVQANAILEMQLRRLAALERQKIVD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI++  DIL    R   II+ EL+++ D+    RRTRIV    ++  ED I  
Sbjct: 451 QLAEIEREIEDLKDILDKPERQRQIIRDELMAIVDKHGDDRRTRIVPHEGEVSMEDLIAD 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V+  F+ STH  +LFF++ 
Sbjct: 511 EDVVVTLTRTGYAKRTRTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    E I  +M   +        Y+V AT++G
Sbjct: 571 GRVYRAKAYELPEANRTARGQHVANLLAFQPDEHIAQVMQIKDYT---AAPYLVLATRNG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+DF      G I + L   DE++    C+ ++D+LL +  GQ +RF  S   +
Sbjct: 628 LVKKSRLTDFDSNRSGGLIGVNLKDDDELVGAVLCSADDDLLLVSAEGQSIRFHASDEAL 687

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+   +GD++++M +V                                
Sbjct: 688 RPM-GRATSGVLGMRFNEGDELLAMGVVRP------------------------------ 716

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  ++++L  ++ G+ KRT   D+ +  R GKG+      
Sbjct: 717 -----------------------DRYVLVATDGGYAKRTPIDDYPVQGRGGKGVLTIQYD 753

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  + G LV    V+ +D++  ++  G +IR    E+R A R TKGV + +      VV+
Sbjct: 754 R--KRGRLVGALIVDVDDELYAITSTGGVIRTTAKEVRKAGRQTKGVRLMNLGDGTSVVA 811

Query: 894 VER 896
           V R
Sbjct: 812 VAR 814


>gi|31791183|ref|NP_853676.1| DNA gyrase subunit A [Mycobacterium bovis AF2122/97]
 gi|31616768|emb|CAD92868.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium bovis AF2122/97]
          Length = 838

 Score =  841 bits (2172), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/913 (37%), Positives = 509/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+ F      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTAFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|118615925|ref|YP_904257.1| DNA gyrase subunit A [Mycobacterium ulcerans Agy99]
 gi|118568035|gb|ABL02786.1| DNA gyrase (subunit A) GyrA [Mycobacterium ulcerans Agy99]
          Length = 839

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/918 (37%), Positives = 514/918 (55%), Gaps = 93/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ ++    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTMLPPGGEASDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   +  + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDHSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D      L A+ + ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLRELAEAVFWCLENHDADEEATLAAVTDRVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 ISDAYKTGRGSIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V +RRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 361 QMIRYYVEHQLDVTIRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R+ I +
Sbjct: 421 GLIE--------------------------LLGIDEIQAQAILDMQLRRLAALERERIVD 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I R
Sbjct: 455 DLAKIEAEIADLEDILAKPERQRAIVRDELAEIVDKHGDDRRTRIIAADGDVSDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQ 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 575 GRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATQNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ E D+LL +  GQ +RF  +   +
Sbjct: 632 VVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSSEEDLLLVSANGQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNADDRLLSLNVVREGT---------------------------- 722

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   ++ +  R GKG+      
Sbjct: 723 -------------------------YLLAATAGGYAKRTGIEEYPVQGRGGKGVLTIMYD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 758 RR--RGRLVGALIVDDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 815

Query: 894 VERIRESEIVDE-AESTE 910
           + R  E    +  AE+T+
Sbjct: 816 IARNAEENADEAVAEATD 833



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/233 (18%), Positives = 92/233 (39%), Gaps = 13/233 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ + + R GG     + +R ED +    + S+   +L
Sbjct: 616 KSYEDAPYLVLATQNGVVKKSKLTDFDSNRSGG--IVAINLRGEDELVGAVLCSSEEDLL 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G   +       +  P  R  + +  +  N  +R+ ++             Y++ 
Sbjct: 674 LVSANGQSIRFSATDEAL-RPMGRATSGVQGMRFNADDRLLSLNVVR------EGTYLLA 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R GK  + +        ++       ++++   T  G  +R
Sbjct: 727 ATAGGYAKRTGIEEYPVQGRGGKGVLTIMYDRRRGRLVGALIVDDDSELYAITSGGGVIR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                +R  AGR + GVR ++L +GD ++++A     +AD           S+
Sbjct: 787 TAARQVR-KAGRQTKGVRLMNLGEGDTLLAIARNAEENADEAVAEATDTDESS 838


>gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str.
           CCMP1986]
 gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 867

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/915 (36%), Positives = 528/915 (57%), Gaps = 67/915 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S +    E    I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDIVDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE++DG  A+I NP  +   L E+I+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  + +G+GSI +RGV+ IE+       +++ +++TE+P+Q NKAA++E+IA+LV EKR
Sbjct: 241 IKETFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKR 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LDGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKITPLQNNFSANILALVNGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +D ++ +IR + +  +
Sbjct: 361 SLRKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTNS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS +Q  AIL+++L RLT L  D 
Sbjct: 421 AREQL--------------------------QNDHELSVIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I++E + L  +I +  +IL+ + R+  II +EL  + +   +PR+T I+     ++D D 
Sbjct: 455 IKSEHDELTKKITDYKNILNDKERINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + +  RG +G++G   + +D V      + H ++L F
Sbjct: 515 IANERSVVLLTTAGYLKRMPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     ++     Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSLVSVDSFDNEC---YLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710
           K G ++R  LS F ++  +G IA+ L+  D +  V   T+ + +L+ +  G  + F    
Sbjct: 632 KAGFIKRTPLSAFSKVRSNGLIAINLEEGDALTWVRLSTEGDSVLIGSSRGMTIHFRLDT 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L +GD+++SM ++     D    +      +     +     
Sbjct: 692 NELRPL-GRTARGVKSMNLKEGDKLVSMDVLSCDLVDQLANLEEEDIENENEEDLESK-- 748

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                       +IL  S  G GKR     FR+  R+G G+RA 
Sbjct: 749 -----------------------SSNGPWILVASAFGLGKRVPVTKFRLQKRAGMGLRAI 785

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +  +LV +  + + ++++LV+++G ++R   ++I   SRA  GV +      + 
Sbjct: 786 KF--RIKDDSLVGLKVLGEGEELLLVTERGVIVRTNADKISQQSRAATGVKLQRLDDGDH 843

Query: 891 VVSVERIRESEIVDE 905
           +  V  +   +I ++
Sbjct: 844 LSEVVLVPHEQIEED 858


>gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
 gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264]
          Length = 853

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/929 (39%), Positives = 548/929 (58%), Gaps = 105/929 (11%)

Query: 1   MTEHIISSDEEEEKGITSVS-----------------------ITDEMQNSYLTYAINVI 37
           M++ I   +E++E  I   +                       I DE++ SYL Y+++VI
Sbjct: 1   MSDDIRDDEEKQEDIIEETNDDDSDIVVEEIKETNMTNEVNIYIEDEIKASYLDYSMSVI 60

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRILF M +MG+  +K + K ARI GEV+GKYHPHG++++Y+A+
Sbjct: 61  VSRALPDVRDGLKPVHRRILFAMNEMGMTHDKPFKKSARIVGEVLGKYHPHGDSSVYNAM 120

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            R+AQD+++R LL++G GNFGSVDGD  AA RYTE R+ K    LL D+ K+T+DFR N+
Sbjct: 121 VRLAQDFNMRYLLVDGHGNFGSVDGDEAAAMRYTEARMAKITAELLADIDKNTIDFRKNF 180

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           D S  EP VL A+ PN+L+NG  GIAVGMATNIP HNL E+ DG VA+IDN +I +D L+
Sbjct: 181 DESLDEPTVLPAKLPNLLLNGSTGIAVGMATNIPPHNLSEICDGIVALIDNREISVDELI 240

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
             I+GPDFPTG +I G+ GI  AY TGRG I + G   IE +   +E I+VTE+PYQVNK
Sbjct: 241 NYIKGPDFPTGGIINGKQGIYEAYRTGRGKIKVAGKVKIETSKTGKESIIVTELPYQVNK 300

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIAELVR K++  I+DLRDESDR+G R+VIELK+G  +++ILN LY++T LQ+ F
Sbjct: 301 ARLIEKIAELVRHKKLTGISDLRDESDREGIRIVIELKKGEESELILNSLYKFTDLQNTF 360

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
            + M+AL    P    L  IL+ ++  R  V+ RR ++ LNKA +RAH+L G  IA+ N+
Sbjct: 361 GIIMLALVNNAPRVLNLKQILENYLEHRYNVITRRVQFELNKAENRAHILEGFKIALDNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S +   AR +L+                           +   SE+Q +AI
Sbjct: 421 DEVIRIIRGSKDANEAREKLIA--------------------------SFGFSEIQAKAI 454

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L++RL RLTGL RD I  E   L + I+E   IL+  S+   IIK E++ +K++    RR
Sbjct: 455 LDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKKYRIIKDEVIKLKEDFGDKRR 514

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I E  +++  ED I  ED+VVT++  GYVKR  +  Y +QRRGG G +     ++D +
Sbjct: 515 TEIKEARVEIGIEDLIKDEDVVVTLTEKGYVKRTSIDTYHSQRRGGIGVNATNTVEDDVI 574

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            D++I     ++L F++ G V+  KV+ +P    QARGK + N++ L++ ER++T++   
Sbjct: 575 KDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVR 634

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--END 695
           E E    +  + F TK G V++  L+ F  IN++G  A+ L   DE+      +   +++
Sbjct: 635 EFE---KDKAIFFITKDGVVKKTDLTLFANINKTGIRALTLRDEDELKFAGLTSGSEKDE 691

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I + T+ G  +RF    +RV  GR + GV+GI+L   D V++  I+       +      
Sbjct: 692 IFIATRNGISIRFCEEDVRVM-GRTAAGVKGITLRDKDYVVAAVIINPEKISEELS---- 746

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                                                       ++T++E+G+GKRT+  
Sbjct: 747 --------------------------------------------VMTITEEGYGKRTALS 762

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
           ++++ +R GKGI    +++  + G +V V  V+D  +I+L++ +GTLIR  V+ + +  R
Sbjct: 763 EYKVQSRGGKGIINLKINE--KTGKIVDVKIVDDKTEIMLITSEGTLIRTKVDTVSVIGR 820

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIVD 904
           AT GV I     +E+V S  +I E+   +
Sbjct: 821 ATSGVRIMKVRNEEKVASAVKIAENPEEE 849



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 81/220 (36%), Gaps = 7/220 (3%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ ++  T+ G   R  I        R  +GV   +  + D +  M I  + D   
Sbjct: 529 LIKDEDVVVTLTEKGYVKRTSIDTYHS-QRRGGIGVNATNTVEDDVIKDMYIAKNLDTLL 587

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               +   +   +            ++ S     S +  +S         K++ I  +++
Sbjct: 588 IFTTKGKVFSMKVYEIPEAGKQARGKLISNLIKLSEDERVSTVIRVREFEKDKAIFFITK 647

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G  K+T    F   N+   GIRA  +   +E+     +   ++ D+I + +  G  IR 
Sbjct: 648 DGVVKKTDLTLFANINK--TGIRALTLRDEDEL-KFAGLTSGSEKDEIFIATRNGISIRF 704

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
              ++R+  R   GV   +    + VV+   I   +I +E
Sbjct: 705 CEEDVRVMGRTAAGVKGITLRDKDYVVAAVIINPEKISEE 744


>gi|15839378|ref|NP_334415.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121635889|ref|YP_976112.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121635916|ref|YP_976139.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148821197|ref|YP_001285951.1| DNA gyrase subunit A [Mycobacterium tuberculosis F11]
 gi|215405990|ref|ZP_03418171.1| DNA gyrase subunit A [Mycobacterium tuberculosis 02_1987]
 gi|215413860|ref|ZP_03422525.1| DNA gyrase subunit A [Mycobacterium tuberculosis 94_M4241A]
 gi|215448279|ref|ZP_03435031.1| DNA gyrase subunit A [Mycobacterium tuberculosis T85]
 gi|218755722|ref|ZP_03534518.1| DNA gyrase subunit A [Mycobacterium tuberculosis GM 1503]
 gi|224988389|ref|YP_002643056.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254233411|ref|ZP_04926737.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|254366466|ref|ZP_04982510.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254548934|ref|ZP_05139381.1| DNA gyrase subunit A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260184859|ref|ZP_05762333.1| DNA gyrase subunit A [Mycobacterium tuberculosis CPHL_A]
 gi|260203143|ref|ZP_05770634.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
 gi|289445531|ref|ZP_06435275.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289572582|ref|ZP_06452809.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289747776|ref|ZP_06507154.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289760103|ref|ZP_06519481.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|289764121|ref|ZP_06523499.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|294995614|ref|ZP_06801305.1| DNA gyrase subunit A [Mycobacterium tuberculosis 210]
 gi|298527404|ref|ZP_07014813.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306778824|ref|ZP_07417161.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|306782612|ref|ZP_07420934.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|306786980|ref|ZP_07425302.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|306791537|ref|ZP_07429839.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|306795600|ref|ZP_07433902.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|306801575|ref|ZP_07438243.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|306805784|ref|ZP_07442452.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|306970180|ref|ZP_07482841.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|13879047|gb|AAK44229.1| DNA gyrase subunit A [Mycobacterium tuberculosis CDC1551]
 gi|121491536|emb|CAL69990.1| DNA gyrase subunit A gyrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121491563|emb|CAL70020.1| Dna gyrase subunit A gyrA (DNA topoisomerase) [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124603204|gb|EAY61479.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis C]
 gi|134151978|gb|EBA44023.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148719724|gb|ABR04349.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis F11]
 gi|224771502|dbj|BAH24308.1| DNA gyrase subunit A [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289418489|gb|EFD15690.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CPHL_A]
 gi|289537013|gb|EFD41591.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis K85]
 gi|289688304|gb|EFD55792.1| subunit A gyrA [Mycobacterium tuberculosis 02_1987]
 gi|289711627|gb|EFD75643.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis GM 1503]
 gi|289715667|gb|EFD79679.1| subunit A gyrA [Mycobacterium tuberculosis T85]
 gi|298497198|gb|EFI32492.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308328161|gb|EFP17012.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu002]
 gi|308332535|gb|EFP21386.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu003]
 gi|308336278|gb|EFP25129.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu004]
 gi|308339882|gb|EFP28733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu005]
 gi|308343896|gb|EFP32747.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu006]
 gi|308347680|gb|EFP36531.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu007]
 gi|308351598|gb|EFP40449.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu008]
 gi|308352304|gb|EFP41155.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu009]
 gi|323717345|gb|EGB26550.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis CDC1551A]
 gi|326905765|gb|EGE52698.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis W-148]
          Length = 838

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 874

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/937 (37%), Positives = 519/937 (55%), Gaps = 113/937 (12%)

Query: 1   MTEHIISSDEEEEK---------------GITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M +    + +EE                  +  V +  EMQ SYL YA++VI+ RA+PD+
Sbjct: 1   MADENTPTPDEEPTGPIPGADDGVAGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W+
Sbjct: 61  RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWA 120

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +R+ L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP 
Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIR 221
           VL AR+PN+L+NG  GIAVGMATNIP HNL EV  G    + +P+   + L++     I+
Sbjct: 181 VLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLAHPEASNEELLDALIERIK 240

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + 
Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLA 299

Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +KIA+LV++ +I  IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N
Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV
Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR S   E AR  LM                          G + + E+Q  AILE+
Sbjct: 420 IALIRRSDTVEDARGGLM--------------------------GLLEIDEIQANAILEM 453

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RL  L R  +  E + L   I E   IL+S  R   I+  EL  + D+    RR+++
Sbjct: 454 QLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQL 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V    DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   
Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + E
Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695
                 Y+V ATK G V++  L D+      G IA+ L        DE++  E  + ++D
Sbjct: 634 ---AAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDD 690

Query: 696 ILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +LL ++  Q +RF  +   +R   GR + GV+G+S   GD+++SM +V            
Sbjct: 691 LLLISRKAQSIRFTATDDTLRPM-GRATSGVKGMSFRDGDELLSMNVVRTGT-------- 741

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                        F+ T ++ G+ KR+ 
Sbjct: 742 ---------------------------------------------FVFTATDGGYAKRSP 756

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             ++R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR  
Sbjct: 757 VDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQT 814

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            R T GV + +  K + VV+V R  E+    E    +
Sbjct: 815 GRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDAD 851



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 14/251 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSV 589
                 +V  +  G VK+  L  Y + R GG     +   D+    +L           +
Sbjct: 632 YEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDL 691

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  S      +          P  R  + +  +S   G+ + ++             +V 
Sbjct: 692 LLISRKAQSIRFTATD-DTLRPMGRATSGVKGMSFRDGDELLSMNVVRT------GTFVF 744

Query: 650 FATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCV 706
            AT  G  +R+ + ++    R G    A K+      ++      + ++IL  T  G  +
Sbjct: 745 TATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVI 804

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  ++ IR   GR+++GV+ I+L K D V+++A    A  + +E          Q     
Sbjct: 805 RTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDADGPDDEPQADPAE 863

Query: 767 GDTEEITSLKN 777
           G  E       
Sbjct: 864 GTVEGTEPSAE 874


>gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG]
 gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF]
          Length = 874

 Score =  840 bits (2171), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/937 (37%), Positives = 519/937 (55%), Gaps = 113/937 (12%)

Query: 1   MTEHIISSDEEEEK---------------GITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M +    + +EE                  +  V +  EMQ SYL YA++VI+ RA+PD+
Sbjct: 1   MADENTPTPDEEPTGPIPGADDGVSGLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDV 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W+
Sbjct: 61  RDGLKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQTWA 120

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +R+ L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP 
Sbjct: 121 MRMPLVDSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFSDNYDGRSQEPD 180

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIR 221
           VL AR+PN+L+NG  GIAVGMATNIP HNL EV  G    + +P+   + L++     I+
Sbjct: 181 VLPARFPNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLAHPEASNEELLDALIERIK 240

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + 
Sbjct: 241 GPDFPTGALVVGRKGIEEAYRTGRGSIPMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLA 299

Query: 282 EKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +KIA+LV++ +I  IAD+RDE S R G R+V+ LKR A A V+LN L+++T LQ+ FS N
Sbjct: 300 QKIADLVKDGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLFKHTDLQTNFSAN 359

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+AL    P   +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV
Sbjct: 360 MLALVDGVPRTLSLDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEV 419

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + +IR S   E AR  LM                          G + + E+Q  AILE+
Sbjct: 420 IALIRRSDTVEDARGGLM--------------------------GLLEIDEIQANAILEM 453

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RL  L R  +  E + L   I E   IL+S  R   I+  EL  + D+    RR+++
Sbjct: 454 QLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFGDDRRSQL 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           V    DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++++D V   
Sbjct: 514 VPFDGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKGVRGAKLKEDDIVDHF 573

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + E
Sbjct: 574 FVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDESIAQILAIKDYE 633

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQEND 695
                 Y+V ATK G V++  L D+      G IA+ L        DE++  E  + ++D
Sbjct: 634 ---AAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDD 690

Query: 696 ILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +LL ++  Q +RF  +   +R   GR + GV+G+S   GD+++SM +V            
Sbjct: 691 LLLISRKAQSIRFTATDDTLRPM-GRATSGVKGMSFRDGDELLSMNVVRTGT-------- 741

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                        F+ T ++ G+ KR+ 
Sbjct: 742 ---------------------------------------------FVFTATDGGYAKRSP 756

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             ++R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR  
Sbjct: 757 VDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEIRQT 814

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            R T GV + +  K + VV+V R  E+    E    +
Sbjct: 815 GRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDAD 851



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 14/251 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSV 589
                 +V  +  G VK+  L  Y + R GG     +   D+    +L           +
Sbjct: 632 YEAAPYLVLATKGGLVKKTSLKDYDSPRSGGVIAINLRETDDGNDDELIGAELVSADDDL 691

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  S      +          P  R  + +  +S   G+ + ++             +V 
Sbjct: 692 LLISRKAQSIRFTATD-DTLRPMGRATSGVKGMSFRDGDELLSMNVVRT------GTFVF 744

Query: 650 FATKHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCV 706
            AT  G  +R+ + ++    R G    A K+      ++      + ++IL  T  G  +
Sbjct: 745 TATDGGYAKRSPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLGGGVI 804

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  ++ IR   GR+++GV+ I+L K D V+++A    A  + +E          Q     
Sbjct: 805 RTRVNEIRQ-TGRDTMGVQLINLGKRDAVVAVARNAEAGREAEEVDADGPDDEPQADPAE 863

Query: 767 GDTEEITSLKN 777
           G  E       
Sbjct: 864 GTVEGTEPSAE 874


>gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1]
          Length = 813

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/884 (40%), Positives = 528/884 (59%), Gaps = 84/884 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRIL+ M ++G  +N+ Y K AR+
Sbjct: 3   NISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSARV 62

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YDAL RMAQD+++R  L++GQGNFGS+DGD PAA RYTE R+ +
Sbjct: 63  VGDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARMSR 122

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A   L D+ K+TV+FR NYD +  EP VL AR PN+LVNG  GIAVGMATNIP HNLGE
Sbjct: 123 LAGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNLGE 182

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  + ++DNP+ ++  LM+ I+ PD PTGA I    G+  AY TGRGS  IR    +E
Sbjct: 183 VIDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLKGVLEAYRTGRGSFKIRSRLDVE 242

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
             S   E IV+ E+PY +NKA ++EKIA LV +K+I  I+DLRDESDR G R+VI+LK+G
Sbjct: 243 TRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLKKG 302

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A +DVI+N+LY+ T+L++ F +NM+A+   +P+   L  +L+ F+  R+EV++RR+++ L
Sbjct: 303 AISDVIINKLYKLTALETSFGINMMAVVNNRPQLLNLKQVLEYFLEHRKEVILRRSRHDL 362

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA  RAH+L GL IA+ N+DEVVR+IR S     AR +L+                   
Sbjct: 363 EKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLIS------------------ 404

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LS+VQ +AIL++RL RLT + R+ +  E   L  +I+    IL +   L
Sbjct: 405 --------NFSLSQVQAQAILDMRLQRLTNMEREKLMQEYRELLQQIEFLKSILENIDIL 456

Query: 498 LGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            G IK+EL  +K    TPRRT+I  +    +E  D I   D+VVT+S  GY+KR  L  Y
Sbjct: 457 KGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLEYY 516

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             Q+RGGKG +G  + D+DF+T LF  S H  +  FS+ G  Y  K + +P GS  ARG 
Sbjct: 517 HQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARGV 576

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L+  E I T +            Y +F TK G V++  +  F  +   G IA+
Sbjct: 577 HIKNLLPLDNEEYIATALSERNF---HQRHYFLFVTKKGMVKKTSIEMFKNMRSLGLIAV 633

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V+    E+++++TT  G  +RF    +R   GRN+ GV+GISL +GD+V+
Sbjct: 634 NLKPGDELIGVKVVKDESEVIITTHDGLAIRFACRELRAM-GRNAAGVKGISLRQGDEVV 692

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S A++   +A                                                  
Sbjct: 693 SGAVLDPGEARE------------------------------------------------ 704

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              + T+SEKGFGK+TS   +++  R GKG+    V+  ++ G +V+  PV+D +++I+ 
Sbjct: 705 ---LFTISEKGFGKKTSLDMYKLQARGGKGLINMKVT--SKTGKVVSSMPVSDQEELIIF 759

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +    +IR+  ++IR   R+T+GV +     D++V+  + I   
Sbjct: 760 TSANKIIRLGTSDIRSVGRSTQGVKMVDLENDQKVICADLIIPE 803



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 9/254 (3%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G +++         +   +  +     D I  ++     + ++  ++ G   R  +   
Sbjct: 457 KGEIKKELQEIKKTYSTPRRTQILEQDPDSIEMLDLIPDHDVVVTLSRNGYIKR-TLLEY 515

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTE 770
                R   G+ G ++   D + ++    +        +    Y+               
Sbjct: 516 YHQQKRGGKGIAGANVGDKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARG 575

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                      E  I+    +    +  + L V++KG  K+TS   F   N    G+ A 
Sbjct: 576 VHIKNLLPLDNEEYIATALSERNFHQRHYFLFVTKKGMVKKTSIEMF--KNMRSLGLIAV 633

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           ++        L+ V  V D  ++I+ +  G  IR    E+R   R   GV   S  + + 
Sbjct: 634 NLKPG---DELIGVKVVKDESEVIITTHDGLAIRFACRELRAMGRNAAGVKGISLRQGDE 690

Query: 891 VVSVERIRESEIVD 904
           VVS   +   E  +
Sbjct: 691 VVSGAVLDPGEARE 704


>gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
 gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083]
          Length = 865

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/926 (38%), Positives = 521/926 (56%), Gaps = 102/926 (11%)

Query: 1   MTEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M + I  +  E      + +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADDITPATPEAGGIIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++NP+   +     LME I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +VA + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   +
Sbjct: 360 LSLDAFIRHWVAHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVD 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM+                           + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARTGLME--------------------------LLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E  +IL+S  R  GI+  EL ++ ++    R+T +V    DM  ED
Sbjct: 454 KIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAIVEKYGDDRKTMLVPYDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTVS  GYVKR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVSRGGYVKRTKAVDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + +      Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYD---AAPYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q +
Sbjct: 631 TKAGLVKKTSLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSADSDLLLISKKAQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  S   +R   GR + GV+G+S  +GD+++SM +V                       
Sbjct: 691 RFTASDDTLRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                             F+ T ++ G+ KRT   ++R+  R G
Sbjct: 731 ----------------------------------FVFTATDGGYAKRTPVDEYRVQGRGG 756

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VN +R   R T GV + +
Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNGVRETGRDTMGVQLIN 814

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
             K + VV + R  E+    E    +
Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVEGD 840



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 14/249 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+  L  Y + R GG     +  R++    +L         + +L  S
Sbjct: 625 PYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSADSDLLLIS 684

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +          P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 685 KKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 737

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 738 GGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 797

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR+++GV+ I+L K D V+ +A    A  + +E    +               
Sbjct: 798 NGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVEGDVADDETVEGAAETIGT 856

Query: 771 EITSLKNDS 779
           +     +  
Sbjct: 857 DEGEAPSAE 865


>gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
 gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031]
          Length = 828

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/897 (40%), Positives = 533/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K +
Sbjct: 2   QRERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GK+HPHG+ A+YD+L R+ QD+S+R  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K TVDF  N+D S +EP VL +  PN+L NG  GIAVGMATNIP
Sbjct: 122 EVRMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E+VDG +A+I NP++++  LM+ +  PDFPTG +I G  G++NAY TGRG +VIR
Sbjct: 182 PQNLREIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIYGYEGVRNAYMTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE I+VTE+PYQVNK  ++EKI ELV +K++  IAD+RDESDR G R+
Sbjct: 242 ARALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  ++  ++  R E+V+
Sbjct: 302 VIELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDGVPRVLNLKEMMIYYIKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L+ A  RAH+L GL I + NLDEV+  IR SP+  TA+ +LM+R          
Sbjct: 362 RRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E       I+    I
Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDMEYTETLALIEALKFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LSS  + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LSSPEKQMEIIREELLKVREVYGDARRTEIVPQEGDFSIEDMIAQEDVVITITHDGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G +G   + +DF+  +FI STH  +LFF++ G  Y  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGQGVTGAQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+AL NI+ L  GE+I   +     +      ++V AT +G V++  L DF    R
Sbjct: 576 RAARGRALANIMELQPGEKIRAYINIRNFD---EPGFIVMATTNGIVKKTPLDDFSHPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ ++  DE+L       E+ I+L    G  VRF  + IR   GR ++GV+GI+L 
Sbjct: 633 NGLAAITIEEHDELLDARLTDGEHQIILAKSSGFVVRFAEAEIRSM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 EGEKCISMVTTKRFDTA------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  +IGALV +  VND+
Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KIGALVGLLDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++  G + R  V++IR+  R T GV +      + + ++ R+ +S+   +++
Sbjct: 758 DDLIIITTHGIVNRQHVSDIRLTGRNTSGVRLIRLMAGDVISALARVPKSDDEGDSD 814


>gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386]
 gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386]
          Length = 819

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/886 (42%), Positives = 536/886 (60%), Gaps = 82/886 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M ++G+ ++K Y K AR
Sbjct: 12  KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG++A+Y A+ R+AQ+++ R LLI G GN+GS+DGD  AA RYTE R+ 
Sbjct: 72  IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K ++ LL+D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP HN G
Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV DG VA+I+NPDI +D L+  I GPDFPTG +I GR+GI  AY TGRG + + G   I
Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGIINGRSGIIEAYKTGRGKVRVAGKIKI 251

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E++   +E I+V E+PYQVNKA ++E+IAELVR K++  I+DLRDESDR G RVVIELKR
Sbjct: 252 EESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELKR 311

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  +++ILN LY+YT LQ+ F +  +AL    P    L  IL+ ++  R  VV RRTK+ 
Sbjct: 312 GEESELILNSLYKYTDLQNTFGIIFLALVDNAPRVLNLKEILQNYLKHRYSVVTRRTKFE 371

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L+KA  RAH+L G  IA+ N+DEV++IIR S +   A+ +LM                  
Sbjct: 372 LDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDKLMA----------------- 414

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        SEVQ +AIL++RL RLTGL R  I  E   L + I+E   ILS   +
Sbjct: 415 ---------GFAFSEVQAKAILDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDK 465

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           +  IIK+E+  +K++   PRRT I +  +++  ED I  E++VVT++  GYVKR P+ VY
Sbjct: 466 IYAIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVY 525

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           RAQ+RGG G S   + ++D + D++I     S+L F++ G V+  KV+ +P  S QARG+
Sbjct: 526 RAQKRGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGR 585

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + NI+ L + E ++TI+   E E    +  + F T+ G V++  L  F  IN++G  A+
Sbjct: 586 LISNIIKLQEDEMVSTIIKVREFE---KDKDIFFVTRKGVVKKTNLELFASINKAGIKAI 642

Query: 677 KLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            L   DE++     +    ++I L T+ G  +RF  + +R   GR + GV+GI+L   D 
Sbjct: 643 GLKDDDELIFAGLTSGTLKDEIFLATREGFAIRFSENDVRSM-GRTASGVKGITLRPEDV 701

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +++ AI+                                                     
Sbjct: 702 IVAGAII------------------------------------------------YASED 713

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           L  + ILT+SE+G+GKRT   ++R+ +R GKGI      K  + G +  V  V+D+ +I+
Sbjct: 714 LSGKTILTISEEGYGKRTKLEEYRLQSRGGKGITNLK--KNTKTGKISDVKIVDDSSEIM 771

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L++ +GTLIR  VN I I  RAT GV I    ++E+V S  +I   
Sbjct: 772 LITSEGTLIRTQVNSISIIGRATSGVRIMKVRENEKVASTVKITPE 817



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 94/249 (37%), Gaps = 12/249 (4%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++ K   F    R+     +++   E    +    E  ++  T  G   R PI   R  
Sbjct: 474 VKKIKED-FSDPRRTEIRDARVEIGIE----DLIKDEEVVVTLTDKGYVKRTPIDVYRAQ 528

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R  +GV   ++ + D +  M I  + D+          H      +     +    L 
Sbjct: 529 K-RGGIGVSATNILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEASKQARGRLI 587

Query: 777 NDS---SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           ++      +  +S         K++ I  V+ KG  K+T+   F   N++  GI+A  + 
Sbjct: 588 SNIIKLQEDEMVSTIIKVREFEKDKDIFFVTRKGVVKKTNLELFASINKA--GIKAIGLK 645

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +E+     +      D+I L + +G  IR   N++R   R   GV   +   ++ +V+
Sbjct: 646 DDDEL-IFAGLTSGTLKDEIFLATREGFAIRFSENDVRSMGRTASGVKGITLRPEDVIVA 704

Query: 894 VERIRESEI 902
              I  SE 
Sbjct: 705 GAIIYASED 713



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           +    +     + A  +      +E  S    + +     E   ++L   E+ ++T+++K
Sbjct: 455 ELKAILSDPDKIYAIIKEEVKKIKEDFSDPRRTEIRDARVEIGIEDLIKDEEVVVTLTDK 514

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+ KRT    +R   R G G+ AT++ + +    +  ++   + D +++ + KG +  + 
Sbjct: 515 GYVKRTPIDVYRAQKRGGIGVSATNILEDDI---IKDMYIAKNLDSLLIFTTKGKVHDIK 571

Query: 867 VNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           V EI  AS+  +G     I    +DE V ++ ++RE E   +
Sbjct: 572 VYEIPEASKQARGRLISNIIKLQEDEMVSTIIKVREFEKDKD 613


>gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69]
          Length = 787

 Score =  840 bits (2170), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/870 (41%), Positives = 539/870 (61%), Gaps = 85/870 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I +
Sbjct: 576 RTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L 
Sbjct: 634 NGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+  +                                                   
Sbjct: 693 EGDTVVGAS--------------------------------------------------- 701

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  +
Sbjct: 702 --LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           + +++++D G +IR  +  I    RAT GV
Sbjct: 758 EDLMIITDTGVMIRTNLANISQTGRATMGV 787



 Score =  101 bits (250), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 76/545 (13%), Positives = 168/545 (30%), Gaps = 83/545 (15%)

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+  RT+    K      V+      V        I+R            ++   N   +
Sbjct: 239 VLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGV 298

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           + +I++  D+S  +  +    ++++QT     +        G   I +    L   I+  
Sbjct: 299 RFVIEVKRDASANVILNNLFKMTQMQTNFGFNM---LAIQNGIPKILSLRQILDAYIEHQ 355

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR---EDMVVTVSH 544
            +++  R+R          +             ++ + ++           E     +S 
Sbjct: 356 KEVVVRRTRFDKE-----KAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK 410

Query: 545 LGYVKRVP--LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
               +R    +   R +R  G  R  +    +D      +          +    V +  
Sbjct: 411 FKLSERQSQAILDMRLRRLTGLERDKIQSEYDD-----LLALIADLADILAKPERVSQII 465

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +   K             I  ++   +++    +  ++  +  G ++R   
Sbjct: 466 KDELDEVKRKFSDKR-------RTELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQ 518

Query: 663 SDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +F    R   G     +   D +  + + +  + +L  T  G+  R     I    GR 
Sbjct: 519 DEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEI-PEYGRT 577

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + G+  ++L K D+  S+  V++ ++D                                 
Sbjct: 578 AKGLPVVNLLKLDEDESIQTVINVESDR-------------------------------- 605

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEI 838
                           + ++   +  G  KRTS  +F     N    G++A ++      
Sbjct: 606 --------------SDDAYLFFTTRHGIVKRTSVKEFANIRQN----GLKALNLKD---E 644

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             L+ V     +  II+ +  G  +R   + +R  SR   GV   +  + + VV    I 
Sbjct: 645 DELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLIT 704

Query: 899 ESEIV 903
           + + V
Sbjct: 705 DQDEV 709



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 102/241 (42%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D++ S    +L   AD  + +   + +S   +    + +   S K  + +        
Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMIGQVLSL 492

Query: 790 CQELKLKEQFIL-TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             E  ++E  +L T+S +G+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    +DE + +V    ES+  D+
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a]
 gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a]
          Length = 834

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/911 (39%), Positives = 517/911 (56%), Gaps = 94/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPPPG---DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG++AIYD L R+AQ WSLR  L++G GNFGS 
Sbjct: 58  YDGGYRPDRGYFKCSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+ ++TVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 118 GNDPPAAMRYTEARMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +D+ +   + L+E    II+GPDFPT  +I+GR+G
Sbjct: 178 GIAVGMATNIPPHNLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIVGRSG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E+    R Q+VVTE+PYQVN   + EKIAELVR+ ++  I
Sbjct: 238 IEDAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGI 296

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+RDE S R G R+VI+LKR A A V+LN LY++T LQ  F VNM+A+    P    L 
Sbjct: 297 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA+ +LDEV+ +IR + + + AR 
Sbjct: 357 QMIRYYVEHQVDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 417 QLMER--------------------------FTLSEIQATAILDMQLRRLAALERQRIID 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   I E   IL+S  R   II +EL  V ++    RRTR+V    DM  ED I +
Sbjct: 451 EAAELRARISELEAILASPVRQRQIIGEELAEVVEKFGDERRTRLVPFEGDMSIEDLIAQ 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+QRRGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 511 EDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+ +Q ERI  ++   + E      Y+V ATK G
Sbjct: 571 GRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVIALKDYEV---APYLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
             ++  LSDF      G +A+ L   DE+++       +D+LL ++  Q +RF      +
Sbjct: 628 LCKKTALSDFDSNRAGGLVAINLRDDDELIAARLVAPGDDLLLVSRNAQSIRFHADDEQL 687

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+     D+++SM +V+                               
Sbjct: 688 RPM-GRATSGVIGMRFDAEDELLSMDVVVPGTTAD------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +L  +  G+ KRT   ++ +  R GKG+    + 
Sbjct: 722 --------------------------LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI- 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++  G LV    V+ +DQ+  ++  G ++R    ++R A R T GV +       +VV 
Sbjct: 755 -VSTRGGLVGALVVDPDDQLYAIASNGGVLRTIAKDVRRAQRQTMGVRLIDLETGVQVVG 813

Query: 894 VERIRESEIVD 904
           V R  ++E  +
Sbjct: 814 VARNADAEDTE 824


>gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
 gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B]
          Length = 816

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/885 (39%), Positives = 517/885 (58%), Gaps = 83/885 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             ++I +E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M ++   +N+ Y K AR
Sbjct: 7   EQINIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSAR 66

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ ++YDAL RMAQ++S+R  +++GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 67  VVGDVIGKYHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMS 126

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   L D+ K+TV FRPNYD S QEP VL  + PN+L+NG  GIAVGMATNIP HNLG
Sbjct: 127 RLAGEFLADIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 186

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ DG +  +DNP  D+  ++ +I GPDFPTGA I G  G+ +AY TGRGSI IRG   +
Sbjct: 187 ELCDGLLHQLDNPGCDIKEIITLIHGPDFPTGASIYGGRGLYDAYTTGRGSIKIRGRVEV 246

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+   D + +V+ EIPY +NK++++EKIA L+ + RI  ++DLRDESDR+G R+V++LK+
Sbjct: 247 EERKKDYQSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLKK 306

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G  AD+I N LY+YT L++ F +NM+ +   +P    +  +L+ F+A R EV++RRT Y 
Sbjct: 307 GVIADIITNALYKYTPLETSFGINMMVVADNRPATLNIQQMLEHFLAHRREVILRRTAYD 366

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K+ +RAH+L GL IA+ N+DEVV IIR S N   AR  LM+R                
Sbjct: 367 LRKSEERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMER---------------- 410

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE Q +AIL++RL RLT L R  + +E N L   I+    IL++   
Sbjct: 411 ----------FGLSERQAQAILDMRLQRLTNLERQKLIDEYNELIRLIEYLRSILNNDEV 460

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L G+I+ E+  ++D   TPR+T ++E L  +   D I  ED+V+T+S  GY+KR  +  Y
Sbjct: 461 LRGVIRDEIKEIQDRYATPRKTEVLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNY 520

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           + Q+RGGKG +GV    +DFV      + H  +L F++LG ++   V ++P G   A+G 
Sbjct: 521 QQQKRGGKGVAGVSTSADDFVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGA 580

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L +++ E + T +   E     +  Y +F TK G V+R+    +     +G IA+
Sbjct: 581 HIANLLPMDKEEFVATALAIREFS---SERYFLFVTKRGMVKRSCTELYKNCRSTGIIAV 637

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE+L+V+      ++LL T+ G   RF IS IR   GR + GV+GI+L   D+V 
Sbjct: 638 SLKEGDELLTVKEIDDNAEVLLATQQGLSNRFHISGIRP-TGRGAAGVKGIALKGADRVA 696

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  I+     +                                                 
Sbjct: 697 AGVIMTGNGRNE------------------------------------------------ 708

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LTVS  G+GKRTS   + + NR G G+    V+   + G ++    V   D ++L+
Sbjct: 709 ---VLTVSANGYGKRTSIEHYPLRNRGGSGVINMRVTP--KTGQVIGAVMVLPEDDLLLL 763

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +    +IR+ V+ I    RAT+GV++     D+ V   + +  ++
Sbjct: 764 TSANKIIRLSVSGISSVGRATQGVMLVRMENDDTVTGFDLVDPND 808



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 102/293 (34%), Gaps = 79/293 (26%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE+++         I+  +K     R  +      + R +  +  + L      
Sbjct: 382 IALDNIDEVVA---------IIRASKNAVEARENLMERFGLSERQAQAILDMRLQRLTNL 432

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +  ++I     ++         +   + +    R    + ++  +    + V  ++    
Sbjct: 433 ERQKLIDEYNELIRLIEYLRSILNNDEVLRGVIRDEIKEIQDRYATPRKTEVLEDLEGIN 492

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L   E  ++T+S +G+ KRT   +++   R GKG+     S  + + +  A     +
Sbjct: 493 ILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQSFCAT---TN 549

Query: 850 NDQIILVSDKGTLIRVPVNE------------------------------IRIAS----- 874
           + Q++L ++ G +  +PV++                              IR  S     
Sbjct: 550 HQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIREFSSERYF 609

Query: 875 --------------------RATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
                               R+T G++  S  + + +++V      EI D AE
Sbjct: 610 LFVTKRGMVKRSCTELYKNCRST-GIIAVSLKEGDELLTV-----KEIDDNAE 656


>gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
 gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195]
          Length = 809

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/889 (40%), Positives = 530/889 (59%), Gaps = 94/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I +EM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K 
Sbjct: 5   NTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DPPAA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 LAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+      +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +
Sbjct: 185 LAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HI +   +R+ I VTEIPYQVNKA ++ KIAELV++++IV I+DLRDESDRQG RVVIEL
Sbjct: 245 HIGEVD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A+DRAH+L GL  A+  +D ++ IIR S N +TAR+ L+                
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S +Q +AIL+L+L RL  L R  I +E   L   I    D+LS  
Sbjct: 410 ------------FDFSVIQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++  ++K++   +K     PR T I    +++   ED +   D++VT+S  G++KRVP 
Sbjct: 458 EKIYALVKEDAKDLKGSYGQPRATEISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPA 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612
           +V+R Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P   S  
Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRI 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + Q ERIT I+          + +++ AT  G +++  L +F  +  SG
Sbjct: 578 AKGTAIVNLIPVTQDERITAILDLKSFP---ADHFLLMATNKGEIKKTSLQEFTAVRSSG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAM L + DE+++    T+E DILL T++GQ +RFP+S +R  + R S GV+ I L+KG
Sbjct: 635 LIAMDLATSDELVAAVETTEEKDILLATRMGQSIRFPVSELRT-SLRASGGVKAIVLSKG 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +                                                    
Sbjct: 694 DEVVSMDVAQEGT----------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++TV+E G GK T+  ++   +R+G G+    V  +++ G +VA   V++ DQ
Sbjct: 707 ------LVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSETDQ 758

Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895
           ++L+S  G + R  V E      I I  RAT+GV +    + +RVV+V 
Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 10/215 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
                + I+  ++ G   R P +  R    R   G+ G+   + D V  +++    D   
Sbjct: 496 LVPHMDVIVTLSERGFIKRVPANVFR-LQHRGGTGIMGMPTREADAVRFLSVSDTHDTLL 554

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++  ++                       + +  I+     +    + F+L  +
Sbjct: 555 FFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPVTQDERITAILDLKSFPADHFLLMAT 614

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            KG  K+TS  +F        G+ A D++       LVA     +   I+L +  G  IR
Sbjct: 615 NKGEIKKTSLQEFTAVR--SSGLIAMDLAT---SDELVAAVETTEEKDILLATRMGQSIR 669

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            PV+E+R + RA+ GV     +K + VVS++  +E
Sbjct: 670 FPVSELRTSLRASGGVKAIVLSKGDEVVSMDVAQE 704


>gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 831

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/902 (39%), Positives = 543/902 (60%), Gaps = 89/902 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V++T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K 
Sbjct: 4   RITDVNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA RYTE +
Sbjct: 64  ARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAK 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L D+ KDTVDF+ NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIPTHN
Sbjct: 124 MSKIAVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY +G+GSI++R   
Sbjct: 184 LGEVISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVMGKAGIRQAYESGQGSIIVRAKV 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    +++IVV EIPY VNKA ++E+IA L REK I  I D+ DE+DR+G R+VI++
Sbjct: 244 EIEEQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDV 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R ASA+VILN LY+ T +Q+ ++ NM+A+    P+  +L  IL+ ++  +EEVV RRT+
Sbjct: 304 RRDASAEVILNNLYKMTLMQTTYNFNMLAIVKGAPKILSLKEILQYYLEHQEEVVRRRTE 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA++RAH++ GL IA+ ++D ++ IIR S   E A++ LM                
Sbjct: 364 FDLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLM---------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q +AIL+LRL RLTGL R+ I +E   L   I +  DIL+ +
Sbjct: 408 ----------DDYSLSDRQAQAILDLRLVRLTGLEREKIEDEYQKLVAAIADYKDILAHQ 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            R+  II  EL+ ++++    RRT +    + ++EDED I  ED++VT++H GYVKR+P+
Sbjct: 458 ERINQIIYDELMEIQNKFGDERRTELQVGDISNIEDEDLIEEEDIIVTLTHNGYVKRLPV 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             ++AQ RGG+G  G+ +  +DF+  L   STH  +LFF++ G V+  K + +P     A
Sbjct: 518 DEFKAQNRGGRGVKGMGVHSDDFIEHLVASSTHDLLLFFTNTGKVFAMKGYEIPEYGRAA 577

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  +IN+L ++  E++T ++   + E       + F T+ G V+R  +++F  I  +G 
Sbjct: 578 QGIPIINLLDVDGKEKVTAVINVAQREDDLQ-KDLFFVTRQGTVKRTLVTEFKNIRSNGI 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE+++V     + +++L T LG    F +SA+R   GR++ GVRG  L  GD
Sbjct: 637 KAINLHEGDELINVAIVDDDQNMILGTHLGHAATFKVSAVRSM-GRSAAGVRGARLRDGD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +I  A +                                                    
Sbjct: 696 YLIGAAPLN--------------------------------------------------- 704

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             ++  +L +SEKG+GK+T + ++ I  R G GI+  +V++ N  G L  +  V  ++ +
Sbjct: 705 --EDDQVLVISEKGYGKKTPASEYPIKGRGGLGIKTVNVTEKN--GPLAGLTTVQGDEDL 760

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE-----AES 908
           ++V+DKG +IR  V  +    R+  GV +     D  V ++ ++ +     +     AE 
Sbjct: 761 MVVTDKGVIIRFGVESVSQTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEE 820

Query: 909 TE 910
            E
Sbjct: 821 AE 822



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 17/231 (7%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V+  G VKR  ++ ++  R  G     + + + D + ++ IV    +++  + LG   
Sbjct: 612 FFVTRQGTVKRTLVTEFKNIRSNG--IKAINLHEGDELINVAIVDDDQNMILGTHLGHAA 669

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV  +      A   A +    L  G+ +    P  ED+       V+  ++ G  ++
Sbjct: 670 TFKVSAVRSMGRSA---AGVRGARLRDGDYLIGAAPLNEDDQ------VLVISEKGYGKK 720

Query: 660 NKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
              S++  I   G + +K     +    +  + T   + D+++ T  G  +RF + ++  
Sbjct: 721 TPASEYP-IKGRGGLGIKTVNVTEKNGPLAGLTTVQGDEDLMVVTDKGVIIRFGVESV-S 778

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              R+++GV  I +     V +M  V    A+ D      +         +
Sbjct: 779 QTRRSAIGVHLIKMDADSVVATMTKVEKETAETDPTEASAEEAETPVEGPN 829


>gi|215425192|ref|ZP_03423111.1| DNA gyrase subunit A [Mycobacterium tuberculosis T92]
 gi|215432911|ref|ZP_03430830.1| DNA gyrase subunit A [Mycobacterium tuberculosis EAS054]
 gi|219555778|ref|ZP_03534854.1| DNA gyrase subunit A [Mycobacterium tuberculosis T17]
 gi|289567888|ref|ZP_06448115.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289748468|ref|ZP_06507846.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289756065|ref|ZP_06515443.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
 gi|289541641|gb|EFD45290.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T17]
 gi|289689055|gb|EFD56484.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis T92]
 gi|289696652|gb|EFD64081.1| subunit A gyrA [Mycobacterium tuberculosis EAS054]
          Length = 838

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/913 (37%), Positives = 509/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L K  +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
 gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491]
 gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491]
          Length = 831

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 384/900 (42%), Positives = 549/900 (61%), Gaps = 88/900 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY 
Sbjct: 6   NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  V +ID+P  +L+ +++ I GPDFPTG +I G+ GIK AY TGRG I IR 
Sbjct: 186 HRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIYGKNGIKEAYETGRGRIKIRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  IA++RDESDR G RVV+
Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIRVVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLALFISHRKSVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+++            
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL RD I NE   L  EI+    IL 
Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILR 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 459 SEELLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDVEDLIPNEAVVVTMSHRGYVKRVP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  
Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N++SL   E+I   +   +      +  + F TK+G ++R  LS+F  I   G
Sbjct: 579 AIGKAVVNLISLAPDEKIMATITTKDFN---EDKSIAFFTKNGIIKRTNLSEFKNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +    E   IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 636 VKAINLDGDDELVTAKIIHPEIQQILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                                                 
Sbjct: 695 PKDYVIGATVVSS----------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 708 -----ENEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  + E   E +  E
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCPKEEKEIEEDLPE 819


>gi|15607148|ref|NP_214520.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|148659763|ref|YP_001281286.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|167969469|ref|ZP_02551746.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|307086732|ref|ZP_07495845.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
 gi|1552559|emb|CAB02427.1| DNA GYRASE (SUBUNIT A) GYRA (DNA TOPOISOMERASE (ATP-HYDROLYSING))
           (DNA TOPOISOMERASE II) (TYPE II DNA TOPOISOMERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|148503915|gb|ABQ71724.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Ra]
 gi|308363882|gb|EFP52733.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu012]
          Length = 838

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+  +D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 806

 Score =  840 bits (2169), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/884 (40%), Positives = 540/884 (61%), Gaps = 87/884 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +KG+  V + ++M+ SYL Y+++VI+ RA+PD++DGLKPVHRRI++GM  +G++ N  Y 
Sbjct: 6   DKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGPYR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+VMGK+HPHG+++IYDA  R+AQ+++ R  L++GQGNFG++DGD  AA RYTE
Sbjct: 66  KSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K    +L D+ KDTVDF+PN+D    EPVVL +R+PN+LVNG  GIAVGMATN+P 
Sbjct: 126 LRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNMPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G ++ IDN +I +D LM  I+GPDFPTGA I+GR GIK AY TGRG I +R 
Sbjct: 186 HNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIMGREGIKEAYKTGRGKIQVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           V+ IE+   ++ +IVV EIPYQVNK+ ++ KIAELV+ K I  I+ +RDES R+G R+ I
Sbjct: 246 VAEIEEEK-NKRRIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIRIAI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKR A+ +V+LN+LY+ T +Q+ F +  +AL    P+   L  ++  +V  +  VV RR
Sbjct: 305 DLKRDANPNVVLNKLYKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINVVTRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L KA+ RAH++ GL IA+ N+D ++ I+R S N + A+ +  +             
Sbjct: 365 TKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEE------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E+Q +AIL++R+ RLTGL R+ +  E   L   I E  +IL 
Sbjct: 413 --------------FGLTEIQGQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILE 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +  +L+ IIK EL+ ++D+    RRT I     +++ ED I  ED+V+T++  GY+KR+P
Sbjct: 459 NHEKLMSIIKDELIEIRDKFGDLRRTVIKSAAGEIDLEDIIKEEDVVITLTQFGYIKRMP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              Y+ Q+RGG+G S +  R+EDFV DLFI STH  +LFF++LG  Y  K + +P  S Q
Sbjct: 519 EGTYKPQKRGGRGISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQ 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++G A+INIL+L+  E++ +I+P  E +    NL +V ATK G ++R    +   I +SG
Sbjct: 579 SKGTAIINILNLSANEKVQSIIPVREYD---PNLNIVMATKDGIIKRISFEEIKNIRKSG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             AM L   D I+     T E++++L TK G  +RF    +R   GR S+GV+ I L K 
Sbjct: 636 INAMTLRDGDSIIGTRLTTGEDELILVTKKGMSIRFKEDEVR-LTGRTSMGVKAIELNKD 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+   +V                                                   
Sbjct: 695 DEVVGFDVVS-------------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               ++++L +S+ GFGK T   ++RI +R+GKGI    V   ++ G LV+   ++ ND+
Sbjct: 705 ---ADKYLLVISQNGFGKLTPIDEYRIQSRAGKGIITYKV--KDKTGDLVSAKIIDKNDE 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           I++++ +G +IR+    I +  R+T GV + +    E VV+V +
Sbjct: 760 IMMITSEGIIIRIETEGISVMGRSTSGVKLMNIKDSE-VVAVAK 802



 Score =  105 bits (261), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 73/215 (33%), Gaps = 9/215 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +E+ ++  T+ G   R P    +    R   G+  ++  + D V  + I    D   
Sbjct: 498 IIKEEDVVITLTQFGYIKRMPEGTYKPQK-RGGRGISALTTREEDFVNDLFITSTHDLIL 556

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y+                      + S    +              I+  ++
Sbjct: 557 FFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPVREYDPNLNIVMATK 616

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G  KR S  +  I N    GI A  +       +++        D++ILV+ KG  IR 
Sbjct: 617 DGIIKRISFEE--IKNIRKSGINAMTLRDG---DSIIGTRLTTGEDELILVTKKGMSIRF 671

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             +E+R+  R + GV      KD+ VV  + +   
Sbjct: 672 KEDEVRLTGRTSMGVKAIELNKDDEVVGFDVVSAD 706



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 120/304 (39%), Gaps = 29/304 (9%)

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               + +    I++L     +  I+   E  S + +  +   T+     R K     +  
Sbjct: 320 YKNTQMQTTFGIINLALVNGVPKILNLKELISYYVDHQINVVTR-----RTKFD-LEKAK 373

Query: 670 RSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRN 720
               I     + LD+ D I+ +   ++ +D     K+     F ++ I+         R 
Sbjct: 374 ARAHIVEGLKIALDNIDRIIEIVRSSRNDD---EAKIKFTEEFGLTEIQGQAILDMRIRR 430

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             G+    L +  +      ++   A++ E +   + + +  +    +  +       + 
Sbjct: 431 LTGLEREKLDEEYK-----ELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFGDLRRTV 485

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           ++    E   +++  +E  ++T+++ G+ KR     ++   R G+GI A    + + +  
Sbjct: 486 IKSAAGEIDLEDIIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRGISALTTREEDFVND 545

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERI 897
           L   F  + +D I+  ++ G    +   EI  +SR +KG  I +    + +E+V S+  +
Sbjct: 546 L---FITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLSANEKVQSIIPV 602

Query: 898 RESE 901
           RE +
Sbjct: 603 REYD 606


>gi|87124805|ref|ZP_01080653.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
 gi|86167684|gb|EAQ68943.1| DNA gyrase A subunit [Synechococcus sp. RS9917]
          Length = 891

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/916 (38%), Positives = 533/916 (58%), Gaps = 67/916 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPVGPGSGGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ +S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQSFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G +A+I+NP++D +ALM II GPDFPTG  ILGR+G
Sbjct: 181 NGSAGIAVGMATNIPPHNLGELINGLLALIENPELDDNALMRIIPGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L +R                            LSE+Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQERH--------------------------GLSEIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ G+I++EL  ++D     RRT I++    ++D D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGLIQEELTQLRDRYPIERRTEILDLAGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +GR+G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGRAGTRSQGEEAVKLFIGCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++         ++  ++  T
Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREELITSLLAVSAFN---DDTDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ ++ G  + F +S 
Sbjct: 632 QGGYIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L +GD ++SM ++    AD   +       +           
Sbjct: 692 EELRPL-GRTARGVRSMNLREGDALVSMDVLPVELADRVAQSSDDGGEAEADAEDGP--- 747

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                    +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 748 ----------------------TASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAI 785

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 786 KF--RTDSDVLVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDR 843

Query: 891 VVSVERIRESEIVDEA 906
           +  V  +  +   DE 
Sbjct: 844 LSEVVLVPPAPEEDEE 859



 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 15/254 (5%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              +    R+  + +     D    ++    E  ++L T+ G   R P+S       R +
Sbjct: 491 RDRYPIERRTEILDLAGGLDD----IDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGT 545

Query: 722 VGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G  G      + V   I            D  + Y        +               
Sbjct: 546 RGRAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVAYALPAYRVPQCSRTAKGTPVVQLLP 605

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  I+          +  +L +++ G+ KRT    F  SN    G+ A  +    + 
Sbjct: 606 IPREELITSLLAVSAFNDDTDLLMLTQGGYIKRTRLSAF--SNIRSNGLIAIGL---EDG 660

Query: 839 GALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            AL  V      D +++ S  G  I  R+   E+R   R  +GV   +  + + +VS++ 
Sbjct: 661 DALTWVRLAVPGDSVLIGSRAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDALVSMDV 720

Query: 897 IRESEIVDEAESTE 910
           +        A+S++
Sbjct: 721 LPVELADRVAQSSD 734


>gi|33240587|ref|NP_875529.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
 gi|33238115|gb|AAQ00182.1| DNA gyrase A subunit [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 875

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/915 (38%), Positives = 537/915 (58%), Gaps = 73/915 (7%)

Query: 1   MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M +    +    +E E  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 4   MADPTEPTGGVPDELEDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 63

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 64  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 123

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GS+D DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 124 GSIDNDPPAAMRYTESRLRSLTQDSLLEDIESETVDFIDNFDGSQQEPTVLPARIPQLLL 183

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE++DG +A+I NPD++   +M+II GPDFPTG  ILGR+G
Sbjct: 184 NGSSGIAVGMATNIPPHNLGELIDGLMALIANPDLNDQEIMKIIPGPDFPTGGQILGRSG 243

Query: 237 IKNAYATGRGSIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y +GRGS+ +RGV+ IE        DR+ I++T++PYQ NKAA++E+IA +V +K+
Sbjct: 244 IRETYLSGRGSVTMRGVAEIETLEIPGRPDRDAIIITQLPYQTNKAALIERIAYMVNDKK 303

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R +   V+LN L++ T LQS FS NM+AL   +P   
Sbjct: 304 LEGISDIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQSNFSANMLALVDGEPITL 363

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L+ +L  F+ FR   + +RTKYLL KA +R H+L+GL +A+  LDE++ +IR + +   
Sbjct: 364 SLLRMLNVFLDFRVITIEKRTKYLLRKAEERNHLLLGLLLALDQLDEIIALIRSASDTSV 423

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+++L +                             L++VQ  AIL+++L RLT L  D 
Sbjct: 424 AKKQLQE--------------------------IHGLTDVQADAILQMQLRRLTALESDK 457

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L ++I +  DILS++SR+  IIK EL+S+K++    RRT I++    +ED D 
Sbjct: 458 IRLEHEDLLVKISDFKDILSNKSRVYEIIKTELISIKEKFPQVRRTEILDLGSGLEDIDL 517

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G+SG   + E+ V      + H ++L F
Sbjct: 518 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKSGTRSQGEEEVKLFISCNDHDNLLLF 577

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++     +   ++ Y++  T
Sbjct: 578 SVRGVSYSVPAYRVPQCSRAAKGTPVVQLLPIPREESITSLISVSSFD---DDNYLLMLT 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G ++R  +S F +I  +G I++ L+  D +  V   +  + +L+ +K G  + F ++ 
Sbjct: 635 IGGFIKRTPVSAFSKIRANGLISINLEDGDALRWVRLASSADSVLIGSKAGMTIHFRLND 694

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L  GD ++SM ++    AD                       
Sbjct: 695 NELRPL-GRTARGVRSMNLRDGDSLVSMDVLSKELAD----------------------- 730

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                        N  E      + +  +IL  S  G GKR     FR+  RSG G+RA 
Sbjct: 731 --------RIASTNDDEAINSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAM 782

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                ++   LV +  ++  ++++LVS+KG ++R   ++I   SRA  GV +      + 
Sbjct: 783 KF--RSDTDELVGLKVLDKGEEVLLVSEKGVIVRTSADKISQQSRAATGVRLQRLDSGDH 840

Query: 891 VVSVERIRESEIVDE 905
           +  +  +      +E
Sbjct: 841 LSEIVLVPPQLADEE 855



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 97/255 (38%), Gaps = 21/255 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              ++ ++ ++  G++KR P+S +   R  G     + + D D +  + + S+  SVL  
Sbjct: 624 FDDDNYLLMLTIGGFIKRTPVSAFSKIRANG--LISINLEDGDALRWVRLASSADSVLIG 681

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES--------- 641
           S  G    ++     L      ARG   +N+   +    +  +     D           
Sbjct: 682 SKAGMTIHFRLNDNELRPLGRTARGVRSMNLRDGDSLVSMDVLSKELADRIASTNDDEAI 741

Query: 642 ----SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQEN 694
                +   +++ A+  G  +R  ++ F    RSG    AMK  S  DE++ ++   +  
Sbjct: 742 NSNGQYEGPWILVASADGLGKRVPVTQFRLQKRSGMGLRAMKFRSDTDELVGLKVLDKGE 801

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           ++LL ++ G  VR     I     R + GVR   L  GD +  + +V    AD +     
Sbjct: 802 EVLLVSEKGVIVRTSADKI-SQQSRAATGVRLQRLDSGDHLSEIVLVPPQLADEEVNSDS 860

Query: 755 MKHMSAQRRLISGDT 769
           +   S          
Sbjct: 861 LSSNSDSGADTPPKD 875


>gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2]
 gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2]
          Length = 864

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 386/911 (42%), Positives = 544/911 (59%), Gaps = 72/911 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  V++ DEM+ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   EFAQEIFKVNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YDAL RMAQ++S+R +LI+GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH L  DL K+TVDF  NYDGS  EP V  ARYPN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKVAHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +A+ID+PD D + L+  + GPDFPT  +I G  GI+ AY TGRG +V+
Sbjct: 183 PPHNLTEILNATIALIDDPDTDDETLLSHVPGPDFPTAGIINGAAGIREAYLTGRGRVVM 242

Query: 251 RGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  +H E+     +  I+VTE+PYQVNKA ++E+IAELVREK+I  I +LRDESD+ G R
Sbjct: 243 RARTHFEEDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+RG   DV+LN LY+ T +QS+F +NMVA+ G +P    L  IL  F+  R EVV
Sbjct: 303 IVIELRRGELPDVMLNNLYQQTQMQSVFGINMVAIVGGQPRTLGLRDILTVFLRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KAR+RAH+L GLA+A+AN+D ++ +I+ +P    AR  LM ++W++  +  
Sbjct: 363 TRRTIYDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHA 422

Query: 430 LIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           L++  D ++    S         D +  LS+ Q +AILE+RL RLTGL +D I  E  SL
Sbjct: 423 LLERADAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSL 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I + LDIL S SRL+ +I+ EL+++ +E    RRT IV    D+  ED I  ED VV
Sbjct: 483 LEKIIDLLDILRSESRLMQVIRDELVAMIEEFGDARRTEIVFDYEDLSIEDLIAEEDRVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY+K   LS Y++QRRGG+G+S   M+DED +  L + STH   L F++LG VY 
Sbjct: 543 TLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGRVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP G+  ARG+ ++NIL L +GER+  ++P                         
Sbjct: 603 RKVYQLPQGARGARGRPVVNILPLQEGERVNALLP------------------------- 637

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGR 719
                                     V     ++ I   T  GQ  + P+    R     
Sbjct: 638 --------------------------VREFVDDHYIFFATATGQVKKTPLVDFSRPRQ-- 669

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              G+  I L   D+++   +         E + +     + R   +       +     
Sbjct: 670 --AGIIAIDLRDDDRLVGARLTD----GSRELMLFSNAGKSIRFAEADVRSMGRTAGGVR 723

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +  +  +     L + E  +LT +E G+GKRT   DF +  R G+G+ A   S+ N  G
Sbjct: 724 GIRMDEMQRVVSLLVVGEGQVLTATEHGYGKRTPIDDFPLQGRGGQGVIAIQTSERN--G 781

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ALV    V D D++IL+SD GTL+R  +++I   SR T+GV++   + DE++V +  +  
Sbjct: 782 ALVGAALVQDEDEVILISDAGTLVRTEISQISSVSRNTQGVILIRLSDDEKLVQLAAVSA 841

Query: 900 SEIVDEAESTE 910
             +  +A+  E
Sbjct: 842 MSVDSDADRDE 852



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 16/235 (6%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  +   +  G VK+ PL  +   R+ G     + +RD+D +    +      ++ FS+
Sbjct: 643 DDHYIFFATATGQVKKTPLVDFSRPRQAG--IIAIDLRDDDRLVGARLTDGSRELMLFSN 700

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +      A G   +  + +++ +R+ +++   E         V+ AT+H
Sbjct: 701 AGKSIRFAEADVRSMGRTAGG---VRGIRMDEMQRVVSLLVVGE-------GQVLTATEH 750

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R  + DF    R G+  + + + +     +       E++++L +  G  VR  IS
Sbjct: 751 GYGKRTPIDDFPLQGRGGQGVIAIQTSERNGALVGAALVQDEDEVILISDAGTLVRTEIS 810

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            I   + RN+ GV  I L+  ++++ +A V     D D                 
Sbjct: 811 QISSVS-RNTQGVILIRLSDDEKLVQLAAVSAMSVDSDADRDENATEEDGSSETE 864


>gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius]
          Length = 858

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/900 (42%), Positives = 547/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + V     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSKAAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG++++YDAL RMAQ +S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIFGRRGIIDAYTTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE     +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKEAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E N L I I E   IL
Sbjct: 414 ---------------FNLSHIQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  IIK+EL  +K++   PRRT I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIKEELTEIKEKFSNPRRTEIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + +    +  + F T++G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFD---ESKSLAFFTRNGVVKRTSLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +  T     +++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIATPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++ + +                                            
Sbjct: 695 IDTDFVVDADVINNIE-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTV +KG GKRT+  ++R++NR+G G+ A  +S   + G +V    V+D
Sbjct: 711 --------QEILTVFQKGIGKRTTVEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +  IR A R T GV+I +  KD++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDKDDKVVSIAKCPKEDEEIELDEN 820


>gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7]
 gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402]
 gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7]
          Length = 819

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/891 (41%), Positives = 551/891 (61%), Gaps = 86/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE+GI  V +T EM+NS++ YA++VI+ RA+PD+RDGLKPV RRI++GM  +G      Y
Sbjct: 2   EERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQD+S R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  L+ DL +DT+DF PNYDG  QEP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 122 EARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            HNL EV++  +AV  +PDI +  LM   I+GPDFPTG  ILG+T IK AY TG G IV+
Sbjct: 182 PHNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYILGKTAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++ IVVTEIPY VNKA M+EK+++LVREK+I  I ++RDES+R G RV
Sbjct: 242 RAKTEIEE-KGSKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ TSLQ+ F  N +AL   +P+   L  ++  ++  +EEV+ 
Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIALVNNEPKTLNLKEMITLYLDHQEEVIK 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA DRAH+L GL  A+  +D ++ +IR S   E  +  LM+           
Sbjct: 361 RRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEE---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +S+ Q +AI E++L RL GL R  I ++LN L   I +  DI
Sbjct: 411 ----------------FNMSDKQAKAIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +R RLL II  EL  +KD+    RRT I++G  D+EDED I  ED+++++++ GYVKR
Sbjct: 455 LENRERLLSIIHDELEEIKDKYGDKRRTEIIQGTFDLEDEDLIPVEDVIISLTNNGYVKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ Q RGG+G  G+    +D V+ L  +STH  +LFF++ G VY+ K + +P   
Sbjct: 515 MPVDTYKTQNRGGRGIKGMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFG 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             A+G  ++N+L+L++ E++ +++     +    N+ Y+ F T  G V+R  +++F +I 
Sbjct: 575 RSAKGLPVVNLLNLDKEEQVKSMISINRKQIEENNDYYLFFVTASGLVKRVHINEFERIR 634

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SGKIA+ L   D+++SV+     + IL+    G+ VRF  + +R   GR++ GV+GI++
Sbjct: 635 QSGKIAISLRDDDQLVSVKLTGGNDQILIAASNGKLVRFEETNVRPM-GRSASGVKGINV 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +VI M                                                   
Sbjct: 694 -DGSEVIGMT-------------------------------------------------- 702

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + ++I+ V+E+G+GK +   ++R+SNR GKG++  + ++ N  G +VA+  VN 
Sbjct: 703 ---TDKEGKYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERN--GQIVALRAVNG 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ +++++D G +IR+P+ +++ A RAT+GV +     + +V SVE + ++
Sbjct: 758 DEDLLIITDDGIMIRLPMEQVKTAGRATQGVRLIKVNAENKVSSVEVVEKA 808


>gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis]
          Length = 859

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/896 (39%), Positives = 542/896 (60%), Gaps = 88/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  + IE+   + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G 
Sbjct: 242 VIRSRAEIEQH-NNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EV
Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R        
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q R+I+++RL  LTGL RD +R E   +   I    
Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+
Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P 
Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           G+  A+G+A+ N+L+++  +++   +       D+   N+ Y++F TK G +++  L  F
Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+
Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           G+ L     D+V+ M  + H +                                      
Sbjct: 694 GMRLDDDGQDEVVGMISIKHPE-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV 
Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           +  V D + +++++  G  IRV V ++ I  RAT+GV +   +K  + + SV  + 
Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVV 816



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 19/238 (7%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730
           + +D+ DE++S+   +++             RF +S I+         R   G+    L 
Sbjct: 384 IAVDNIDEVISIIRSSKD---AAEAMSRLIERFDLSDIQARSIVDMRLRALTGLERDKLR 440

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
              + I MA + H +A   +R   M+ + ++      + +E       S +     E   
Sbjct: 441 AEFEEI-MASINHLEALLADRALLMELVKSELL----EIKEKYGDTRKSEIIYASEEFNP 495

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++    +  I+T+S  G+ KRT   +FR   R G G + +D  + + +  + +    + +
Sbjct: 496 EDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSA---SMH 552

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
             I+L + KG    + V EI   ++  KG  I +      D++V +  RI+      E
Sbjct: 553 ATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKE 610


>gi|196232353|ref|ZP_03131207.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
 gi|196223721|gb|EDY18237.1| DNA gyrase, A subunit [Chthoniobacter flavus Ellin428]
          Length = 859

 Score =  839 bits (2168), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/912 (40%), Positives = 556/912 (60%), Gaps = 69/912 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++   + +  +++ +EM  S+L Y+++VI+ RA+PD RDGLKP  RRIL  M  +GV  
Sbjct: 2   PNQNPNEKVQPMNVAEEMSKSFLDYSMSVIISRALPDARDGLKPSQRRILVTMNDLGVLP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+K++KCA+I G+ MG YHPHG+ AIY  L  MAQ W++R +L++GQGNFGSV+GDPPA+
Sbjct: 62  NRKHIKCAKIVGDTMGNYHPHGDQAIYPTLVHMAQPWAMRDMLVDGQGNFGSVEGDPPAS 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL+     L+DD+ K+TVDF P YD    EPVVL A +PN+LVNGG GIAVGMA
Sbjct: 122 MRYTEARLRWLGASLMDDMDKETVDFVPTYDERLMEPVVLPAAFPNLLVNGGTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E ++G  A IDNP+I LD LM+ ++GPDFPTG ++ G  GI++ + TGRGS
Sbjct: 182 TNIPPHNLSECINGICAQIDNPNITLDELMQYVKGPDFPTGCILQGSAGIRSYFETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +RG +  E+  G REQI+VTEIPY VN+A ++++IAEL  EK +  I+D+RDESD   
Sbjct: 242 VRVRGRASFEEAKGGREQIIVTEIPYNVNRAELVKRIAELANEKVLTGISDVRDESDE-N 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVI+LKR  +  VILN L+++T+L+S FSVNM+A++  +P    L   +  ++  R E
Sbjct: 301 TRVVIDLKRDGNPKVILNNLFKHTALESSFSVNMLAIDHGRPRLLGLKDAIACYIEHRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +++RRT++LLN A   A  L G  IA+ANLD+ +RIIR S + + A+ +LM  SW  + +
Sbjct: 361 IILRRTRFLLNAAEVEAEKLEGFLIALANLDDFIRIIRDSRDRDDAKAKLMALSWARAAV 420

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           + L  LI   +  +  DG    +E Q   IL+LRL +LTGL R+ I++E + L + I++ 
Sbjct: 421 EQLGVLIRSEARVV--DGQYKFTEKQVGHILDLRLYQLTGLERESIKDEYDKLLVVIRDL 478

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +DIL+   R+L IIK EL +++D+  + RRT IV    ++  ED I  E ++VT++H G+
Sbjct: 479 MDILAKEHRVLTIIKDELRAIQDKYGSERRTEIVPEQGEIAIEDLIANEGVIVTLTHNGF 538

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +KR  +S YRAQRRGGKG  G+  R+       DFV  LF  +TH  ++FF+  G  Y E
Sbjct: 539 IKRTAVSAYRAQRRGGKGVIGMTAREGETEEDSDFVEHLFTATTHDYLMFFTVEGRCYVE 598

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----EDESSWNNLYVVFATKHGNV 657
           +V+ +P G+  ++G+++ N+L L Q E+I   +       E+E+  + L++VFAT+ G V
Sbjct: 599 RVFEIPEGTRTSKGRSIANVLELRQDEKIAATIRIQGQKTEEETWSDKLHIVFATRSGIV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +++ L++F  I + G IA+++++ D ++  +  T  ++I+L T  G  +RF    +R   
Sbjct: 659 KKSNLNEFKNIRKGGIIAIQIETGDRLIDCKLTTGLDEIVLITHEGMSIRFNEGELRD-Q 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN+VGV GI     D V++ A+V                                    
Sbjct: 718 GRNTVGVWGIRPDTKDYVVAAALVN----------------------------------- 742

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                             KE  +L   E G GKRT   ++RI +R GKGI     +  ++
Sbjct: 743 ------------------KEAMLLVAGENGIGKRTGFDEYRIQSRGGKGIITMKTT--DK 782

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G++     V + D+++L+++KG ++R  V EIR   R  +GV +    ++E +  +  +
Sbjct: 783 TGSVAGALTVVETDELMLITNKGKMVRTRVAEIRETGRNAQGVKLIDLRENEILQGIAPV 842

Query: 898 RESEIVDEAEST 909
             +E  ++AE  
Sbjct: 843 VSNEDEEKAEGE 854


>gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
 gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L]
          Length = 817

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/901 (41%), Positives = 528/901 (58%), Gaps = 87/901 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+    +  V + +EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  N
Sbjct: 2   DEQHSDKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI GEV+GKYHPHG+ ++YDA  R+AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPYKKSARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K    +L D+ K+TVDF PNYDGS QEP VL ++ PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEVRMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEVVDGCV +ID PD  L+ +M  I+GPDFPTGA I+GR GI  AYATGRGS+
Sbjct: 182 NIPPHNLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIMGREGILKAYATGRGSV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + +E  +  + +IVVTEIPYQVNKA ++E IAEL R + I  I  LRDESDR+G 
Sbjct: 242 KMRSCAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+   + D+ILN+LY++T LQ  F + M+AL    P   +L+ +L+ ++  + +V
Sbjct: 302 RIVIELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGHPRVLSLLQVLQYYLGHQRQV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L+KA  RAH+L GL IA+ ++DEV+R IR S   ETA+  LM          
Sbjct: 362 ITRRCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMT--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q  AIL++RL RLTGL R+ I  E   L   I    
Sbjct: 413 -----------------AFGLTDKQAVAILDMRLRRLTGLEREKIEEEYRELEERIAYLR 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+   +++ I+K ELL  K      RRT++     ++  ED I  E MV+T++  GY+
Sbjct: 456 SVLADDRKVMEIVKTELLEAKKRFGDVRRTQLAADTSELGVEDMIPDERMVLTLTRRGYM 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  +VY  Q +GG+G  G+  +DED V  L   S   +VLFF++ G VY+ K + +P 
Sbjct: 516 KRINANVYHTQNKGGRGIKGMGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPE 575

Query: 609 GS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            +   ++G A INIL L+ GE++  ++   + + S N   +  AT++G V++ +L++F  
Sbjct: 576 ANSRNSKGIAAINILPLSTGEKVNALIDLDQADPSMN---LFMATENGLVKKTELAEFKN 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G IA+ L   D +  V     +  I+L TKLG  + F  S +R   GRN+ GVRGI
Sbjct: 633 VRRNGLIAISLIEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPM-GRNTRGVRGI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SLA GD+VI   ++                                              
Sbjct: 692 SLAPGDRVIGADVLAP-------------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +LTVSE+GFGKR +   ++I  R GKG +   ++   + G +V V  V
Sbjct: 708 ---------DCQVLTVSEEGFGKRNNMDAYKIQLRGGKGAKNFKITP--KTGVIVGVEVV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ +++L++  G +IR  +  I I   R T GV I     D++V +++ I       EA
Sbjct: 757 REDQELMLITTNGIVIRTDIESIGIKKGRNTSGVKIQKLEGDDKVAALDTITVDGEEREA 816

Query: 907 E 907
           E
Sbjct: 817 E 817


>gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307]
 gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 859

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/914 (39%), Positives = 528/914 (57%), Gaps = 71/914 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   + +    + I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MADPTGAGNPS--ERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+R  LI+G GNFGSV
Sbjct: 59  YELGLTAERPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+NG 
Sbjct: 119 DNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGS 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE++DG +A+I +P I+   LM II GPDFPTG  ILGR GI+ 
Sbjct: 179 AGIAVGMATNIPPHNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQILGRKGIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y  GRGSI +RGV+ IE        DR+ +++TE+PYQ NKA+++E+IAELV +K++  
Sbjct: 239 TYTGGRGSITMRGVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEG 298

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           IAD+RDESDR G R+VIEL+R A   V+LN LY+ T LQ+ FS   +AL   +P    L 
Sbjct: 299 IADIRDESDRDGMRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGEPVVLNLK 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR E + RRTKYLL KA +R H+L GL +A+ +LD ++++IR + +  TAR+
Sbjct: 359 RMLEVFLDFRIETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQ 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                              LSE+Q  AIL+++L RLT L  D IR 
Sbjct: 419 GLV--------------------------NDHGLSEIQADAILQMQLRRLTALEADKIRL 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL  R R+L II++EL  +K+  +TPRRT I++    +ED D I  
Sbjct: 453 EHEDLIAKIADYKDILQRRERVLSIIEEELRQLKERHNTPRRTEILDLEGGLEDIDLIAN 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + +  RG +G++G   + E+ V      + H S+L FS  
Sbjct: 513 ERSVVLLTENGYLKRMPVSEFESTSRGTRGKAGTKSQGEEAVRLFISCNDHDSLLLFSDR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY    +R+PI S  A+G  ++ +L + + E+IT+++     E    ++ +V  T  G
Sbjct: 573 GVVYSLPAYRVPIASRAAKGTPVVQLLPIPREEQITSLLAVSAFE---EDVQLVMLTTGG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS--AI 713
            ++R  LS F  I  +G IA+ L+  D +  V      + +L+ +  G  + F I+   +
Sbjct: 630 FIKRTPLSAFSNIRANGLIAINLEDADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVR ++L  GD ++SM ++    AD                          
Sbjct: 690 RPL-GRTARGVRAMALRDGDSLVSMDVLPAELADRIAAAGEASDG--------------- 733

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                         E  +       ++L  +  G GKR     FR+  R+G G+R     
Sbjct: 734 --------------ESEEAASSDGPWVLVATASGLGKRVPVDQFRLQRRAGLGLRGIKF- 778

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +  ALV +  +   ++++LVS++G ++R+  + I   SRA  GV +    K +R+  
Sbjct: 779 -RRDGDALVGLCVMGAEEELLLVSERGVIVRLQSDVIPQQSRAATGVRLQRLDKGDRLAE 837

Query: 894 VERI-RESEIVDEA 906
           V  +  E+E  DE+
Sbjct: 838 VVLVPPEAETDDES 851



 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 21/258 (8%)

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                     + L+   E +       E  ++L T+ G   R P+S       R + G  
Sbjct: 488 RHNTPRRTEILDLEGGLEDID--LIANERSVVLLTENGYLKRMPVSEFES-TSRGTRGKA 544

Query: 726 GISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G      + V   IS           D  + Y                           E
Sbjct: 545 GTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLPIPRE 604

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I+         ++  ++ ++  GF KRT    F  SN    G+ A ++    +  +L 
Sbjct: 605 EQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAF--SNIRANGLIAINL---EDADSLR 659

Query: 843 AVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSV------ 894
            V      D +++ S  G  I  R+   ++R   R  +GV   +    + +VS+      
Sbjct: 660 WVRLARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDGDSLVSMDVLPAE 719

Query: 895 --ERIRESEIVDEAESTE 910
             +RI  +    + ES E
Sbjct: 720 LADRIAAAGEASDGESEE 737


>gi|306778294|ref|ZP_07416631.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|306974413|ref|ZP_07487074.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|307082121|ref|ZP_07491291.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
 gi|308213444|gb|EFO72843.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu001]
 gi|308356308|gb|EFP45159.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu010]
 gi|308360195|gb|EFP49046.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis SUMu011]
          Length = 838

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/913 (37%), Positives = 510/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+  +D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515]
 gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 863

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/917 (37%), Positives = 535/917 (58%), Gaps = 72/917 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S D    E  + I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDIVDSGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I NP ++   L E+I+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  + +GRGSI +RGV+ IE+       +++ +++TE+P+Q NKAA++E+IA+LV +K+
Sbjct: 241 IKETFKSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVNGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR   + RRT +LL KA +R H++ GL +A+  +D ++ +IR + +  +
Sbjct: 361 SLRKMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRSAKDTTS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L +                             LS +Q  AIL+++L RLT L  D 
Sbjct: 421 AREQLQK--------------------------DHELSVIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I++E + L  +I +  +IL  + R+  II +EL  + +   +PR+T I+     ++D D 
Sbjct: 455 IKSEHDELTRKITDYKNILQDKDRINEIILEELSKIDERFSSPRKTEILNLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + +  RG +G++G   +++D V      + H ++L F
Sbjct: 515 IANERSVVLLTSAGYLKRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+I+     +   N+ Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEQITSIVSVESFD---NDRYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-- 710
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ +  G  + F +  
Sbjct: 632 KAGFIKRTPLSAFSKIRSNGLIAINLEEGDALTWVRLSKEGDSVLIGSSKGMTIHFRLDN 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L  GD+++SM ++                             
Sbjct: 692 NELRPL-GRTARGVKSMNLKDGDKLVSMDVL----------------------------- 721

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
             + L +  +   N ++E  +    K  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 722 -TSDLVDQLASLENENDEDIESNSSKGPWVLVASAFGLGKRVPVAQFRLQKRAGMGLRAI 780

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +  +LV +  + + +++I V+++G ++R   ++I   SRA  GV +      + 
Sbjct: 781 KF--RIKDDSLVGLKVLGEGEELIFVTERGVIVRTNADKISQQSRAATGVRLQRLDDGDH 838

Query: 891 VVSVERIRESEIVDEAE 907
           +  V  +   +I D  +
Sbjct: 839 LSEVVLVPHEQIDDSDQ 855


>gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
 gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624]
          Length = 836

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/901 (36%), Positives = 520/901 (57%), Gaps = 97/901 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I D+M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ W++R +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K A  +L D+ K+TVD   N+D +  EP VL  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG +A + N DI +D LME I+ PDFPTG +I G  G++ A+ TGRG +VIR
Sbjct: 183 PHNLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIYGYDGVREAFKTGRGRVVIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +H E+    R+ IVVTE+PYQVN   M E+ + LV+E ++  +AD+ D++ + G R+V
Sbjct: 243 AKAHFEEV-NGRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            ELK+ A  +V+LN L+++T+LQS FSVN +AL   +P++  L  ++  FV  R +VV R
Sbjct: 302 YELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGRPQQLNLKDLIYHFVEHRHDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT+Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL L+L R+  L     + E   L  +I +  
Sbjct: 406 -------------DLMTEFELTEIQAEAILALQLRRINKLLILQTKEEYEQLLAQIIDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K +    RR+ I     D+  ED I  + +V+T+S+ GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKSKYGDERRSVIEYAGGDISIEDIIPDDQVVITISNAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  ++ Y+ Q RGG G+     RD+DF+  LFI + H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTSVNEYKTQARGGVGQKASATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G    +G+A+ N++++   + +  ++   +  ++   N+ YV+ ATK G +++  L  + 
Sbjct: 573 GGKNTKGRAIQNLINIEPDDLVKAVICTHDLKEKDYTNSHYVIMATKKGIIKKTSLEQYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G +A+ +   DE+L     +  + I+L  K G+ +RFP   +R   GR+  GVRG
Sbjct: 633 RPRQNGIVAITIKEDDELLEARLTSGNSQIMLAVKSGKAIRFPEDKVRAV-GRSGSGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           ISL    D+VI M  + +                                          
Sbjct: 692 ISLDSDKDEVIGMIAIENPL---------------------------------------- 711

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                      E+ +L VSE G+GKRT   +       +RI+NR GKG++   +++  + 
Sbjct: 712 -----------EETVLVVSENGYGKRTFIDEPETGEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + D +++++  G  IR+PV+ +R+  RAT+GV + +   ++ + +V ++ 
Sbjct: 759 GNLVAIKSVLEEDDLMIINKSGMAIRLPVSGLRVMGRATQGVRLINIKGNDSIAAVAKVM 818

Query: 899 E 899
           +
Sbjct: 819 K 819


>gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
 gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Lawsonia intracellularis PHE/MN1-00]
          Length = 820

 Score =  839 bits (2167), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/892 (40%), Positives = 537/892 (60%), Gaps = 83/892 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF   ++G  + +   KCARI 
Sbjct: 8   ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL RMAQD+S+R  L EGQGNFGS+DGD PAA RYTE R+ + 
Sbjct: 68  GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L D+ K+TVDFRPNYD S +EP+VL  + PN+L+NG  GIAVGMATNIP HNLGE+
Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
            +  + +ID+PD+ +D L+ II GPDFPTG  I    G+ +AY  GRG++ +RG   IE+
Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIEE 247

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                + IV+ EIP+ +NK++++EKIA LV E++I  IADLRDESDR+G RVVIELK+G 
Sbjct: 248 RKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKGV 307

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             ++I+N LY++T L++ F +NM+A+   +P+  T+   L  F+  R EV+VRRT++ LN
Sbjct: 308 IPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRFELN 367

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H+L+GL  A+ ++DEVV +IR S  P  A+  L++R                  
Sbjct: 368 KAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIER------------------ 409

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     LSE+Q ++IL++RL RLTGL R+ +  E++ L  +I     IL     L 
Sbjct: 410 --------FSLSEIQAQSILDMRLQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILW 461

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           G+I+ E+  +K+   TPRRT ++     ++E ED I  +D+V+T+S  GY+KR  L++Y+
Sbjct: 462 GVIRDEVTGIKEMYTTPRRTEVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQ 521

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKG +G+   ++DFV +    + H  +L F++ G +++ KV ++P GS  A+G  
Sbjct: 522 QQRRGGKGVAGLHTSEDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTH 581

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NI+ L + E +TTI+   E     +N + +FAT+ G V+R+  S + +  R+G +A+ 
Sbjct: 582 IANIVPLEKEEWVTTILTVREFS---DNKFFLFATRKGMVKRSSASYYARSRRTGLLAVG 638

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V+  T  + I+L T  G  +RF    +R   GR + GV+GI+L  GD V++
Sbjct: 639 LREDDELIMVKEVTNNDFIVLATAEGFAIRFSCEDVRNM-GRGAAGVKGIALRPGDSVVA 697

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             I+                                                        
Sbjct: 698 CLILQEKQDTPA------------------------------------------------ 709

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             I+TVS  G+GKRTS   +R+  R GKGI    V++  + G ++   PV+D++ ++L++
Sbjct: 710 --IMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVTQ--KTGLVIGAKPVSDDNALVLLT 765

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
               +IR+ V+E+R A RAT GV +        VV  + +  +      ++T
Sbjct: 766 STNKIIRMSVDEVRSAGRATMGVRLVKLDDGAYVVGFDTVDGTVDDSCDDAT 817


>gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684]
 gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684]
          Length = 883

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/907 (42%), Positives = 545/907 (60%), Gaps = 89/907 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +D+     I   ++ +EM+++YL YA++VI+GRA+PD+RDGLKPVHRR+LF M +MGV+ 
Sbjct: 4   TDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMGVQP 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+   K +RI GEVMGKYHPHG+A+IYD L RMAQD+S+R LL++GQGNFGSVD DP AA
Sbjct: 64  NRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDPAAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL + A  +L D+  DTVDF PNYDG  QEP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 124 MRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAVGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E +   +A I+NP+ID+D LM+ IRGPDFPTG +ILG  GI++AYATGRG 
Sbjct: 184 TNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPTGGIILGVGGIRDAYATGRGR 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNK---AAMLEKIAELVREKRIVDIADLRDESD 304
           + ++  +HIE  S  +E IVVTE+PYQV K     +++KIA+LV EK+I +I DLRDESD
Sbjct: 244 VRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLRDESD 303

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R VIELKR     V+LN+LY++T +Q+ F VNMVAL    P+  +L  ++  +V  
Sbjct: 304 RHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVALVDNVPKTLSLREVIGRYVDH 363

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + EV+VRRTKY L +A DRAH+L GL IA AN+DEV+ IIR S + E AR  L+ R    
Sbjct: 364 QREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVNR---- 419

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LSE Q  AIL++ L RLT L  D +R E   L   I
Sbjct: 420 ----------------------FELSERQAEAILQMTLGRLTALEVDKLRQEHADLMERI 457

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E  +IL    R + IIK+EL  + D     RRT I     +++ ED I  + MV+T++ 
Sbjct: 458 RELREILGDEDRQMAIIKEELQEISDAYGNERRTAISYAEGEIDIEDLIADQQMVITITK 517

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+K +PL+ YR QRRGG G +G+ M+D D++  LF+ STH  +LFF++ G VY+ KV+
Sbjct: 518 TGYIKSLPLATYRQQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKVY 577

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP  S  A+G+AL+NIL L +GER+ +++   +        Y++FAT+ G V++ +L  
Sbjct: 578 ELPEASRTAKGRALVNILPLREGERVQSVLSTRDFS---EAPYLLFATRKGTVKKTELQA 634

Query: 665 FIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +       G IA+K+   DE+++V    + +++++ ++ G  VRF     R   GR++ G
Sbjct: 635 YNTPIKADGIIAIKIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSM-GRDTSG 693

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ +    +VI+M I                                           
Sbjct: 694 VRGMDVGDSGEVIAMDIARDD--------------------------------------- 714

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         Q +L ++E GFGKRT   ++R + R  KG+R   +++    G L  
Sbjct: 715 --------------QDLLVITENGFGKRTRIDEYRKTARGAKGVRTIRLTEA--RGGLAG 758

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V ++ +++ +S  G + R  V  I    RA++GV + +  +D+ V ++  + ES+  
Sbjct: 759 ALVVREHQELVFISQNGMVQRTGVRGINRYGRASQGVKVMNVREDDSVRAIALVVESDTA 818

Query: 904 DEAESTE 910
           +  E+ E
Sbjct: 819 EADEALE 825



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 91/269 (33%), Gaps = 14/269 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 ++  +  G VK+  L  Y    +   G   + +RD+D +  +  V     V+  
Sbjct: 612 FSEAPYLLFATRKGTVKKTELQAYNTPIKAD-GIIAIKIRDDDELVAVRRVDEGDEVIIV 670

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +              G   +          +         + + ++  ++  T
Sbjct: 671 SRAGLTVRFSEQDARSMGRDTSGVRGM---------DVGDSGEVIAMDIARDDQDLLVIT 721

Query: 653 KHGNVRRNKLSDFIQ--INRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R ++ ++ +      G   ++L      +       +  +++  ++ G   R  
Sbjct: 722 ENGFGKRTRIDEYRKTARGAKGVRTIRLTEARGGLAGALVVREHQELVFISQNGMVQRTG 781

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  I    GR S GV+ +++ + D V ++A+V+ +D    +    ++  +          
Sbjct: 782 VRGIN-RYGRASQGVKVMNVREDDSVRAIALVVESDTAEADEALELELGADGVEGGGVVA 840

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +      D     + + +  Q     E 
Sbjct: 841 VDADGAGADGGAPASDASDAPQGDDGDEP 869


>gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928]
 gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928]
          Length = 875

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/906 (39%), Positives = 522/906 (57%), Gaps = 93/906 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +  +   I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   
Sbjct: 2   DETPQGDRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K Y KCAR+ GEVMG YHPHG++ IYD L R+AQ WSLR++L++G GNFGS   DP AA
Sbjct: 62  EKGYYKCARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC++   A  ++ D+ +DTVDFRPNYDG   EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTECKMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP+HNL EV DG    + NP+   + L+    E I+GPDFPTGA+I+GR GI++AY T
Sbjct: 182 TNIPSHNLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIVGRRGIEDAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +R V + E+    R  +VVTE+PYQVN   +  KIAELV++ ++  IAD+RDE 
Sbjct: 242 GRGSITMRAVVNTEEI-NGRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   +L   ++ +V
Sbjct: 301 SSRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDSFGANMLALVDDVPRTLSLDAFIRHWV 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRT++ L KA++RAH+LVGL  A+  +DEVV +IR SP  + AR  L++   
Sbjct: 361 THQIDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIE--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E+Q  AILE++L RL  L R  I  E N L  
Sbjct: 418 -----------------------LLTIDEIQANAILEMQLRRLAALERQRIEAEHNELMA 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I +   IL S  R   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+
Sbjct: 455 KIADYTAILESPERQRRIVSEELQAISDKYGDDRRSQLVPYEGDMSIEDLIPEEDVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY +R    +YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K
Sbjct: 515 TRGGYTRRTRTDLYRSQKRGGKGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              LP  +  ARG+ + N+L+    E+I  ++   + E      Y+V ATK+G +++  L
Sbjct: 575 AHELPDTARDARGQHVANLLAFLPDEKIAQVLDLRDYE---QTPYLVLATKNGLIKKTPL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            D+     +G IA+ L   DE+++ E  + E+D+LL +K  Q +RF  +   +R   GR 
Sbjct: 632 KDYDSPRSAGVIAINLREDDELIAAELVSPEDDLLLVSKQAQGLRFTATDEALRPM-GRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+   + D+++SM +V                                       
Sbjct: 691 TSGVIGMRFREDDELLSMDVVRP------------------------------------- 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           + F+ T +  G+GKRT+   F +  R G G+ A     ++E G 
Sbjct: 714 ----------------DTFLFTATSGGYGKRTAVEMFPLRGRGGLGVIAAKT--VDERGG 755

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V++ D+++ ++  G +IR  V+E+R  SR T GV + +  K + V+++ R  + 
Sbjct: 756 LVGAAVVDEGDEVMAITLSGGVIRTRVSEVRPTSRDTMGVRVINLGKGDTVLAIARNGDP 815

Query: 901 EIVDEA 906
             V++ 
Sbjct: 816 GEVEDE 821



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 97/270 (35%), Gaps = 13/270 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G +K+ PL  Y + R  G     + +R++D +    +VS    +L  
Sbjct: 611 YEQTPYLVLATKNGLIKKTPLKDYDSPRSAG--VIAINLREDDELIAAELVSPEDDLLLV 668

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S      +       +  P  R  + +  +   + + + ++           + ++  AT
Sbjct: 669 SKQAQGLRFTATDEAL-RPMGRATSGVIGMRFREDDELLSMDVVR------PDTFLFTAT 721

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +  F    R G   +   + DE    +      + ++++  T  G  +R  
Sbjct: 722 SGGYGKRTAVEMFPLRGRGGLGVIAAKTVDERGGLVGAAVVDEGDEVMAITLSGGVIRTR 781

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +R    R+++GVR I+L KGD V+++A         DE        +          
Sbjct: 782 VSEVRP-TSRDTMGVRVINLGKGDTVLAIARNGDPGEVEDELGEEAGAPAEAAGADVVAE 840

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQF 799
                   ++S    + +E     +     
Sbjct: 841 ARENGAVVEASEGSEVIDESEGSDESDGSE 870


>gi|253796921|ref|YP_003029922.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|297632474|ref|ZP_06950254.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN 4207]
 gi|313656772|ref|ZP_07813652.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN V2475]
 gi|253318424|gb|ACT23027.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 1435]
 gi|328456712|gb|AEB02135.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 4207]
          Length = 838

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/913 (37%), Positives = 509/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY T RGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
 gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis
           DSM 17361]
          Length = 878

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/907 (40%), Positives = 544/907 (59%), Gaps = 94/907 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +   +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GM+ +G  
Sbjct: 3   ENQTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLGNT 62

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCAR+ GEV+GKYHPHG++++Y AL RM Q+W++R  L++GQGNFGSVDGD PA
Sbjct: 63  SDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDSPA 122

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECRL K    ++DD+ KDTVD   N+D +  EP V+  R PN+LVNGG GIAVGM
Sbjct: 123 AMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAVGM 182

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTHNLGEV+DGC A IDNP+ID + LM+ I  PDFPTGA I G  G+K+AY TGRG
Sbjct: 183 ATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIYGIQGVKDAYETGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V+R  + IE      ++IVVTEIPY VNK  ++E IAELV+E +I  I+++ DE+ RQ
Sbjct: 243 RVVMRAKAEIESDES-HDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDETGRQ 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-------PERFTLIGILK 359
           G R+V+++KR A+A VILN+L++ T+LQS FSVN +AL   K       P+  +L   + 
Sbjct: 302 GMRIVVDVKRDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLRECIS 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R EV +RRTK+ L KA++RAH+L GL IA  N+DEVV IIR S  P  A+  L +
Sbjct: 362 YFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQANLEK 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L  +Q++AI+++RL++LTGL  D +  E   
Sbjct: 422 R--------------------------FELDNLQSKAIVDMRLSQLTGLRMDQLHAEYED 455

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   +L    +   ++K EL +VK +    RRTRI+    +   ED    + +V
Sbjct: 456 LMKLIDELQSVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFNAEDFYPNDPVV 515

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVSHLGY+KR PLS +R Q RGG G  G   RD+DF   ++  + H +++FF+  G  Y
Sbjct: 516 ITVSHLGYIKRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCY 575

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF----PEDESSWNNLYVVFATKHG 655
               + +P G   ++G+A+ N+L+++  + +   +       EDE   N+ YVVFATK+G
Sbjct: 576 WLHCYDIPEGDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVNSHYVVFATKNG 635

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  L ++ +   +G IA+ +   DE++ V      N+++L  + G+ VRF   AIR 
Sbjct: 636 TVKKTNLKEYSRPRANGVIAINIVEGDEVVDVRLTNGNNELILANRNGRAVRFDEQAIRS 695

Query: 716 FAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             GR S GVRG+ +  +GD V+ M +V +A+                             
Sbjct: 696 M-GRVSTGVRGMRIDDEGDAVVGMIVVNNAET---------------------------- 726

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                  + ++ VSE+G+GKR+   D+R +NR GKG++   +++
Sbjct: 727 -----------------------ETVMVVSEEGYGKRSDVADYRKTNRGGKGVKTMSITE 763

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVS 893
             + G LVA+  V D + +++++  G +IR+ V E+R+  RAT+GV + +   K++ + S
Sbjct: 764 --KTGRLVAIKNVTDENDLMIINKSGIVIRLAVAEVRVMGRATQGVRLINLARKNDTIAS 821

Query: 894 VERIRES 900
           V ++  S
Sbjct: 822 VCKVMSS 828



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 149/437 (34%), Gaps = 29/437 (6%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R   L  +  D   ++  L   + + ++   +++       A+    +R+    D  +  
Sbjct: 445 RMDQLHAEYEDLMKLIDELQSVLDDPEKCKEVMKTELQAVKAKYGDERRTRIILDEHEFN 504

Query: 432 DLIDDSSYT-------IGSDGTMYLSE--VQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                 +         +G      LS+   Q R  +  + A        +          
Sbjct: 505 AEDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQT 564

Query: 483 EIK-------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            +          L              + + ++ +          +       +++  V 
Sbjct: 565 MMFFTKKGRCYWLHCYDIPEGDKTSKGRAIQNLLNIDPDDSVNAFLRLRGRGFEDEEFVN 624

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              VV  +  G VK+  L  Y   R  G     + + + D V D+ + + +  ++  +  
Sbjct: 625 SHYVVFATKNGTVKKTNLKEYSRPRANG--VIAINIVEGDEVVDVRLTNGNNELILANRN 682

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G   +   +         R    +  + ++        M    +        V+  ++ G
Sbjct: 683 GRAVR---FDEQAIRSMGRVSTGVRGMRIDDEGDAVVGMIVVNNA---ETETVMVVSEEG 736

Query: 656 NVRRNKLSDFIQINR--SGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R+ ++D+ + NR   G   M +  +   +++++  T END+++  K G  +R  ++ 
Sbjct: 737 YGKRSDVADYRKTNRGGKGVKTMSITEKTGRLVAIKNVTDENDLMIINKSGIVIRLAVAE 796

Query: 713 IRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +RV  GR + GVR I+L  K D + S+  V+ ++    E     +  S   ++   D   
Sbjct: 797 VRVM-GRATQGVRLINLARKNDTIASVCKVMSSELAAAEEEEKQEAESDGAQVDLSDNAS 855

Query: 772 ITSLKNDSSVEGNISEE 788
             S ++  +      +E
Sbjct: 856 EASSESRDADSSAGDDE 872


>gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 826

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 534/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ ++  I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V EIP+ VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 EDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL +RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDQIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ +++ DF+  L   STH ++LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINIPEGA---DDNYLFFVTKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRPHDYVVGSGVL------------------------------------------- 707

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          +L +SEKG+GKRTS+ ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 708 ----------GSNDQVLVISEKGYGKRTSASEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             +N +  I++++  G +IR    ++    R+T GV +       +V S+  +   
Sbjct: 756 IVINSSKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVDNGSQVASLTIVPTE 811


>gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
 gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170]
          Length = 813

 Score =  839 bits (2166), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/896 (40%), Positives = 554/896 (61%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  K I  V +  +M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EESYKNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A + NP+I +  L EII+GPDFPTGA ILG++GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQILGKSGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A+A+++LN LY+ T L++ F +  +AL    P+   L  ++K ++  ++ VV
Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYIEHQKNVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   +R         
Sbjct: 363 RRRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDLQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +L+G+I++E+L +K++    RRT+IV    + + E+ I +ED++++++H GY+K
Sbjct: 457 ILNDEEKLIGVIEEEILEIKEKFADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY    + +P  
Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG+A+INI+SL   E+IT IM   E     +N  +VF T+ G +++     F  I 
Sbjct: 577 SRQSRGQAIINIISLATNEKITDIMELSELS---DNSQLVFQTEKGKIKKTDAQLFTNIQ 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L+  D ++S+       DI++TT+ G  ++F  S IR   GRN+ GVR I L
Sbjct: 634 RNGIIAISLEDDDRLVSIRQIDHPCDIIVTTQKGMAIKFASSDIRSM-GRNARGVRAIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +K D V+SM IV                                                
Sbjct: 693 SKDDNVVSMNIVED---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E ++L V+  GFGK+TS  +F   NR GKG+R   +++  + G +VA  P N 
Sbjct: 707 -------EVYLLVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITE--KTGNVVATLPANL 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +D I++VS KG +IR+   +I    R T GV + +    ++ +VSV +  E    D
Sbjct: 758 DDDIMMVSLKGDMIRISARDISTTGRNTLGVKLKNLENTEDFIVSVTKYYEENSED 813


>gi|260435945|ref|ZP_05789915.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
 gi|260413819|gb|EEX07115.1| DNA gyrase, A subunit [Synechococcus sp. WH 8109]
          Length = 874

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/919 (39%), Positives = 531/919 (57%), Gaps = 76/919 (8%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+ +        + +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MTDSVGPVGGGPGDSDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQ++S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP+I    L+++I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y  GRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAELV +K+
Sbjct: 241 IRETYLGGRGSVTMRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS  M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L  R                            LS++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQDRH--------------------------GLSDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  +++   T RRT I++    + D D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQLQERYPTRRRTEILDLGGGLSDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + ED V      + H +++ F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E ITT++P  E     ++  +V  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFS---DDTDLVMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F +S 
Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L  GD ++SM ++    AD                       
Sbjct: 692 EELRPL-GRTARGVRSMNLRDGDALVSMDVLPVELADQVAA------------------- 731

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                          S E  ++   +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 732 ---------------SAEDEEDAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 776

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 777 KF--RTDTDELVGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDR 834

Query: 891 VVSVERIRESEIVDEAEST 909
           ++ V  +      D A+ T
Sbjct: 835 LLKVVLVPPEAEDDPADDT 853



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 101/302 (33%), Gaps = 27/302 (8%)

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
           + L   + +T I  + +       ++ +  ++ G +       +    R+      LD  
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELGQL----QERYPTRRRTEI----LDLG 506

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISM 738
             +  ++    E  ++L T+ G   R P+S       R + G  G      D V   IS 
Sbjct: 507 GGLSDIDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEDAVKLFISC 565

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                     D  + Y        +                  E  I+          + 
Sbjct: 566 NDHDTLVLFSDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFSDDT 625

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++ ++  GF KRT    F  SN    G+ A ++ +     AL  V      D +++ S 
Sbjct: 626 DLVMLTRGGFIKRTRLSAF--SNIRSNGLIAINLEEG---DALTWVRLAVPGDSVLIGSK 680

Query: 859 KGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER--------IRESEIVDEAES 908
            G  I  R+   E+R   R  +GV   +    + +VS++         +  S   +E  +
Sbjct: 681 AGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADQVAASAEDEEDAA 740

Query: 909 TE 910
           +E
Sbjct: 741 SE 742



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 101/258 (39%), Gaps = 20/258 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +V ++  G++KR  LS +   R  G     + + + D +T + +     SVL  
Sbjct: 621 FSDDTDLVMLTRGGFIKRTRLSAFSNIRSNG--LIAINLEEGDALTWVRLAVPGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-----------PED 639
           S  G    ++     L      ARG   +N L          ++P             E+
Sbjct: 679 SKAGMTIHFRLSDEELRPLGRTARGVRSMN-LRDGDALVSMDVLPVELADQVAASAEDEE 737

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQENDI 696
           +++    +V+ A+  G  +R  ++ F    R+G    AMK  +  DE++ +       ++
Sbjct: 738 DAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDTDELVGLSVLGAGEEL 797

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           LL ++ G  VR    AI     R + GVR   L KGD+++ + +V     D         
Sbjct: 798 LLVSEKGVIVRTSADAI-PQQSRAATGVRLQKLDKGDRLLKVVLVPPEAEDDPADDTLND 856

Query: 757 HMSAQRRLISGDTEEITS 774
             S+     + + +   S
Sbjct: 857 SESSDTETTNTENDAQDS 874


>gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83]
 gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83]
          Length = 859

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/896 (39%), Positives = 543/896 (60%), Gaps = 88/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            + E  I ++SI +EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M + G  +  
Sbjct: 2   TDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA   GEV+G YHPHG++++Y AL RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E +DGCVA I+ + DID++ LM+ ++ PDFPTG  I G +G+K A+ TGRG +
Sbjct: 182 MPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIYGYSGVKEAFETGRGRV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR  + IE+   + E+I++TEIPY VNKA ++  IA+L+ EKR+  I+++ DES+R+G 
Sbjct: 242 VIRSRAEIEQH-NNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGM 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+KR A+A V+LN+LY+ T+LQS FSVN +AL   +P    L  ++  FV  R+EV
Sbjct: 301 RIVVEIKRDANASVVLNKLYKMTALQSSFSVNNIALVKGRPRLLNLKDLIGEFVDHRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KAR+RAH+L GL IAV N+DEV+ IIR S +   A   L++R        
Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS++Q R+I+++RL  LTGL RD +R E   +   I    
Sbjct: 413 ------------------FDLSDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            +L+ R+ L+ ++K ELL +K++    R++ I+    +   ED    +DM++T+SH+GY+
Sbjct: 455 ALLADRALLMELVKSELLEIKEKYGDTRKSEIIYASEEFNPEDFYADDDMIITLSHMGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   R+EDFV  ++  S H +++ F++ G  Y  KV+ +P 
Sbjct: 515 KRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           G+  A+G+A+ N+L+++  +++   +       D+   N+ Y++F TK G +++  L  F
Sbjct: 575 GAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAF 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++SV     + D+++  + G+ +RF  S +R  +GR ++GV+
Sbjct: 635 SRPRANGVIAIDLRDNDGLVSVRLTNGKCDMVIANRGGRAIRFHESVVRP-SGRTAMGVK 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           G++L     D+V+ M  + H +                                      
Sbjct: 694 GMTLDDDGQDEVVGMISIKHPE-------------------------------------- 715

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ IL VSEKG+GKR++  D+RI+NR GKG++  ++++  + G LV 
Sbjct: 716 -------------EETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITE--KTGKLVD 760

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           +  V D + +++++  G  IRV V ++ I  RAT+GV +   +K  + + SV  + 
Sbjct: 761 IRAVTDANDLMIINKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVV 816



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 98/238 (41%), Gaps = 19/238 (7%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730
           + +D+ DE++S+   +++             RF +S I+         R   G+    L 
Sbjct: 384 IAVDNIDEVISIIRSSKD---AAEAMSRLIERFDLSDIQARSIVDMRLRALTGLERDKLR 440

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
              + I MA + H +A   +R   M+ + ++      + +E       S +     E   
Sbjct: 441 AEFEEI-MASINHLEALLADRALLMELVKSELL----EIKEKYGDTRKSEIIYASEEFNP 495

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++    +  I+T+S  G+ KRT   +FR   R G G + +D  + + +  + +    + +
Sbjct: 496 EDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTREEDFVEYIYSA---SMH 552

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
             I+L + KG    + V EI   ++  KG  I +      D++V +  RI+      E
Sbjct: 553 ATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNAFIRIKNLTTDKE 610


>gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 860

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/900 (41%), Positives = 548/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V + D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSKVAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +IDNP  +   LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE +   ++ +V+ E+PYQVNKA ++E IA L ++K+I  IA++RDESDR G RVV
Sbjct: 246 AKHHIE-SKAKKDVVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMAEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPEILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L + I E   IL
Sbjct: 414 ---------------FGLSSIQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  IIK+EL  +K++  TPR+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIKEELNEIKEKFSTPRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ +    +  +VF T++G ++R  L++F  I  +
Sbjct: 579 TAKGKAVVNLINLRADEKIMAIIPTPDFD---ESKSLVFFTRNGVIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    Q   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDTDEIVTAKIADVQTQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++ + +                                            
Sbjct: 695 IDTDIVVDADVIDNEE-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ A  +S   + G +V    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTIEEYRLTNRAGSGVIAMKLSP--KTGNIVGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV VN IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDVNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2]
 gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 815

 Score =  838 bits (2165), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/888 (41%), Positives = 533/888 (60%), Gaps = 86/888 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI  E++ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF M  +G   N+ Y K AR+ 
Sbjct: 5   ISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARVV 64

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YDAL RMAQ++S+R  L++GQGNFGS+DGD  AA RYTE R+ + 
Sbjct: 65  GDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMARL 124

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
               L D+ K TVDFRPNYD + QEP VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 125 CSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSEL 184

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DGCV ++DNP   ++ +M  ++GPDFPTG ++ G  G+ +AY TGRGSI IRGV  IE+
Sbjct: 185 IDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGGQGLYDAYTTGRGSIKIRGVVEIEE 244

Query: 259 TSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           T    +E IV+ EIPY +NK+ ++EKIA LV EK+I  +ADLRDESDR+G R+V++LKRG
Sbjct: 245 TGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLKRG 304

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A AD+I+N LY+YT L++ F +NM+A+ G +P    L  +L  F+  R EVV+RRTK+ L
Sbjct: 305 AIADIIINALYKYTPLETSFGINMMAVVGKRPMLLNLKSVLDYFLDHRREVVIRRTKFDL 364

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           +K   R H+L GL IA+ N+DEVV++IR S +P+ A+  LM R                 
Sbjct: 365 DKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMAR----------------- 407

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      LSE+Q +AIL++RL +LTGL  D +  EL  L  +I+    IL++   L
Sbjct: 408 ---------FSLSEIQAKAILDMRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDVL 458

Query: 498 LGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
             +I+ EL  +K+   TPRR+ ++      ++ ED I  E+ VVT+S  GY+KR PLS Y
Sbjct: 459 KSVIRDELKEIKENYSTPRRSELLTANPDAIDIEDLIPDEETVVTLSQRGYIKRTPLSNY 518

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            AQRRGGKG SGV   D DF+    + + H  ++ F++LG ++K K  ++P GS  A+G 
Sbjct: 519 TAQRRGGKGISGVQTGDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKGG 578

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + N+L L++ E ITT +   E +   ++ + +F TK G ++R+ +  +     +G  A+
Sbjct: 579 HVANLLPLDKDECITTALSLREFD---DDRFFLFLTKKGMIKRSSIGLYGNCRSTGIRAV 635

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V     + D +L T+ G  +RF I+  R   GR + GV+G++L   D+V+
Sbjct: 636 NLRDGDELMMVREIEPDVDCILVTRDGSAIRFNINDARPL-GRTTAGVKGVALRGDDEVV 694

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +  +    + D                                                 
Sbjct: 695 ACVVTGDPERDQ------------------------------------------------ 706

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +LTVS  GFGKRT    +R  +R GKGI    ++  N+ G +V    VN++D +IL+
Sbjct: 707 ---LLTVSAGGFGKRTGIDQYRQQSRGGKGILNMRLT--NKTGKVVGARMVNESDDVILL 761

Query: 857 SDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    +IR+ V+E+     RAT+GV +     +  V+  E + E E  
Sbjct: 762 TSANKIIRMSVSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEE 809



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 86/221 (38%), Gaps = 12/221 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +   + ++  G +KR  + +Y   R  G     V +RD D +  +  +      +  
Sbjct: 601 FDDDRFFLFLTKKGMIKRSSIGLYGNCRSTG--IRAVNLRDGDELMMVREIEPDVDCILV 658

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +   + +    P  R  A +  ++L   + +   +   +         ++  +
Sbjct: 659 TRDGSAIR---FNINDARPLGRTTAGVKGVALRGDDEVVACVVTGD----PERDQLLTVS 711

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +  + Q +R GK  + +       +++      + +D++L T   + +R  
Sbjct: 712 AGGFGKRTGIDQYRQQSRGGKGILNMRLTNKTGKVVGARMVNESDDVILLTSANKIIRMS 771

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           +S +    GR + GVR + +   + VI   +V+  + +  +
Sbjct: 772 VSEVSQTRGRATQGVRLVRMDANNSVIGFELVMEGEEELKD 812


>gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
 gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 884

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/894 (40%), Positives = 544/894 (60%), Gaps = 86/894 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  + V  N+
Sbjct: 2   QKEGERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K++K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 62  KHLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L+K +  +L DL KDTVDF+ N+D S  EP V+  + P +LVNG  GIAVGMATN
Sbjct: 122 YTEAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E +D  VA IDN +I +D LM+ I  PDFPTG +I G  G+++A+ TGRG IV
Sbjct: 182 MAPHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGGIIYGYDGVRDAFHTGRGRIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   + E+   +R  I+VTEIPYQVNKA M+ + AELV++++I  I ++RDESDRQG R
Sbjct: 242 LRAKINFEEVG-NRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V ELK  A  +V+LN LY+YTSLQ+ FSVN +AL   +PE+  L  I+  FV  R EVV
Sbjct: 301 IVYELKHDAIPNVVLNMLYKYTSLQTSFSVNNIALVKGRPEQLNLKNIIHHFVDHRHEVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIA---VANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +RRT++ L KA++RAH+L G         +LD+ + IIR S NP  A+  LM+       
Sbjct: 361 IRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKE------ 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q +AIL+LRLARLTG+  D IR E + +   I++
Sbjct: 415 --------------------FDLSDLQAQAILDLRLARLTGMELDKIRAEYDEIMNLIRD 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++ SR   IIK EL+ +K++    RR+ I     +M  ED I  E +V+T+SH G
Sbjct: 455 FEDILANESRRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  LS Y+ Q RGG G      RDEDF+  +   + H  +LFF+  G  +  +V+ +
Sbjct: 515 YIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEI 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSD 664
           P GS  ++G+A+ N++++   ++I   +   +  D    N + VV  TK+G +++  L  
Sbjct: 575 PEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEA 634

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           + +   +G  A+++   D++L     + +++I++ TK G+C+RFP    R   GR S+GV
Sbjct: 635 YSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIATKNGKCIRFPEEKARAV-GRGSIGV 693

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGISL   D+VI M +V   +                                       
Sbjct: 694 RGISLEDDDEVIGMIVVNDVE--------------------------------------- 714

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        + +L VSEKG+GKRT+  D+R++NR GKG+   ++++  + G L+A+
Sbjct: 715 ------------NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITE--KTGNLIAI 760

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             V D D +++++  G  IR+ +NE+R+  R T+GV + +   ++ + ++ ++ 
Sbjct: 761 QNVTDEDGLMIINKSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAAIAKVE 814



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/212 (20%), Positives = 94/212 (44%), Gaps = 18/212 (8%)

Query: 701 KLGQCVRFPISAIRV---FAGRNSVGVRGISLAKGDQVISM-AIVLHADADYDERICYMK 756
           K G    F +S ++       R +  + G+ L   D++ +    +++   D+++ +    
Sbjct: 408 KDGLMKEFDLSDLQAQAILDLRLAR-LTGMEL---DKIRAEYDEIMNLIRDFEDILANES 463

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                 +    + +E    +  S ++ +  E   ++L   E+ +LT+S  G+ KRTS  +
Sbjct: 464 RRFEIIKAELIEMKEKYGDERRSEIDYSGGEMSIEDLIPDEKVVLTISHAGYIKRTSLSE 523

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASR 875
           +++  R G G RA      + +  +VA      N Q +L  ++KG    + V EI   S+
Sbjct: 524 YKVQTRGGVGNRAATTRDEDFLEYIVAAT----NHQYMLFFTEKGKCFWLRVFEIPEGSK 579

Query: 876 ATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            +KG     + +   D+++     IR +++ D
Sbjct: 580 ISKGRAVQNLINIEPDDKIK--AYIRTNDLKD 609


>gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101]
          Length = 846

 Score =  838 bits (2164), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/883 (40%), Positives = 526/883 (59%), Gaps = 67/883 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143
           YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RLQ      LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+  +TVDF  N+DGS QEP V+ +R P +L+NG  GIAVGMATNIP HNL E++DG +
Sbjct: 121 EDIECETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT---- 259
           A+I+NP+++   LM +I GPDFPTG  ILGR+GI+  Y TGRGS+ +RGV+ IE      
Sbjct: 181 ALIENPELEDRELMRLIPGPDFPTGGQILGRSGIREMYTTGRGSVTMRGVASIETIEAKG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DR+ +++TE+PYQ NKAA++E+IAELV +K++  IAD+RDESDR G R+VIEL+R A 
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + RRT+YLL K
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVKGEPVLLTLRKMLEVFLDFRVETIERRTRYLLRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R H+L+GL IA+ NLD ++ +IR + +  TAR +L+++                   
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE+Q  AIL+++L RLT L  D IR E   L  +I +  DIL+ + R+L 
Sbjct: 402 -------FGLSEIQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVLA 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I +EL  ++   D+PRRT I++    +ED D I  E  VV ++  GY+KR+P+S + A 
Sbjct: 455 LITEELGVLRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG +G++G   + E+ V      + H S+L FS  G VY    +R+P  S  A+G  ++
Sbjct: 515 SRGTRGKAGTRSQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+++   E      +  +V  T  G ++R +LS F  I  +G IA+ L+
Sbjct: 575 QLLPIPREEQITSLLAVSEFA---EDAVLVMLTSGGYIKRTRLSAFANIRSNGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVIS 737
             D +  V      + +L+ ++ G  + F +S   +R   GR + GVR ++L  GDQ++S
Sbjct: 632 EGDALTWVRLAQPGDSLLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M ++    AD  E                            SS      E+  +    + 
Sbjct: 691 MDVLPVELADRVE----------------------------SSSAAADEEDTEEVPPSEG 722

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            ++L  S  G GKR     FR+  R+G G+R        +   LV +  +   ++++LVS
Sbjct: 723 PWVLVASASGLGKRVPVDQFRLQKRAGMGLRCMKF--RRDGDVLVGLKVLGAGEELLLVS 780

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +KG ++R+  + +   SRA  GV +      +R+  V  +  +
Sbjct: 781 EKGVIVRMQADAVPQQSRAATGVRLQRLDSGDRLSEVVLVPPA 823


>gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 865

 Score =  837 bits (2163), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/927 (38%), Positives = 523/927 (56%), Gaps = 103/927 (11%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MT+        E+       +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MTDENTPVTPLEDVDAAAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV  G    ++NP+   + L+    + I+GPDFPTGA++
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDG 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           +I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 KIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L   ++ +VA + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  LM                            + + E+Q  AILE++L RL  L R
Sbjct: 420 EIARGGLM--------------------------DLLEIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E  +IL+S  R  GI+ QEL ++ ++    R+T+++    DM  E
Sbjct: 454 QKIVQEHDELQAKISEYNEILASPVRQRGIVSQELAAIVEKFGDDRKTKLIPYEGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP     ARG+ + N+L+    E I  I    + E+     Y+V 
Sbjct: 574 FFTNKGRVYRVKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705
           ATK G V++  L D+      G IA+ L        DE++  E  + ++D+LL ++  Q 
Sbjct: 631 ATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDELIGAELVSSDDDLLLISRKAQS 690

Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +RF  +   +R   GR + GV+G+S  +GD+++SM +V                      
Sbjct: 691 IRFTATDDTLRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------ 731

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                              F+ T ++ G+ KRT+  ++R+  R 
Sbjct: 732 -----------------------------------FVFTATDGGYAKRTAVDEYRVQGRG 756

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + 
Sbjct: 757 GLGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLI 814

Query: 884 STAKDERVVSVERIRESEIVDEAESTE 910
           +  K + VV + R  E+    E    +
Sbjct: 815 NLGKRDAVVGIARNAEAGREAEEVDGD 841



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+  L  Y + R GG     +  +++    +L       +   +L  S
Sbjct: 626 PYLVLATKAGLVKKTSLKDYDSPRSGGVIAINLREQEDGTDDELIGAELVSSDDDLLLIS 685

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +          P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 686 RKAQSIRFTATD-DTLRPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 738

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 739 GGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 798

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + IR   GR+++GV+ I+L K D V+ +A    A  + +E    +             T+
Sbjct: 799 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVVVDETADGAAPAGTD 857

Query: 771 EITSLKND 778
           E  +   +
Sbjct: 858 EGEAPSAE 865


>gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 873

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 396/851 (46%), Positives = 545/851 (64%), Gaps = 19/851 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL KDTVD+ PNYDG+   P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN +I +D LME I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMISGRKGIIDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YL+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELLHILSSAERLMEVIREELELVKEQFNDARRTEITAATHDIDLEDLINQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L+ Y AQRRGGKG++   M+DEDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 546 GYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E E    + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVKEYE---ADKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+     NDI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGNNDIMLFSKAGKVVRFNEGQVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D V+S+ IV H D D             +       +     + +    E N 
Sbjct: 722 GIKLAESDNVVSL-IVPHNDGDVLTVTENGYGKRTELEEYPAKSRATQGVVSIKVSERNG 780

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S     ++   ++F + ++  G   RT   +     R+ +G+     ++  +   +V + 
Sbjct: 781 SVVGAVQVLEGDEF-MMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTTEDEK---VVGLQ 836

Query: 846 PVN--DNDQII 854
            ++  D D II
Sbjct: 837 RIDEPDEDDII 847



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 153/423 (36%), Gaps = 29/423 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +++       ARR  +  + + 
Sbjct: 469 EHEKILDEYKTLLEEIAELLHILSSAERLMEVIREELELVK--EQFNDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D++DLI+  D            Y  +V T    + R  +     R    + +  L +  
Sbjct: 527 IDLEDLINQEDVVVTLSHEGYVKY--QVLTDYEAQRRGGKGKAATRMKDEDFIERLLVAN 584

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
                +  S    +  +K   L +     T R   IV  L   E+E             +
Sbjct: 585 THDTILCFSTRGRMYWLKVYQLPLASR--TARGKPIVNILPLEENERITAILPVKEYEAD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             V   +  G VK+ PL+ +   R  G     V +RDED +  + I   +  ++ FS  G
Sbjct: 643 KFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRDEDTLIGVDITDGNNDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A G   I         ++             N+  V+  T++G 
Sbjct: 701 KVVRFNEGQVRAMGRTAAGVRGI---------KLAESDNVVSLIVPHNDGDVLTVTENGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L ++   +R+ +  + +        ++      + ++ ++ T  G  VR  ++ +
Sbjct: 752 GKRTELEEYPAKSRATQGVVSIKVSERNGSVVGAVQVLEGDEFMMITNGGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I   + ++V+ +  +   D D       +  +       +   +  +
Sbjct: 812 -SRVGRNTQGVTLIRTTEDEKVVGLQRIDEPDEDDIIEDAEITEVENTETPAADSEQGDS 870

Query: 774 SLK 776
           S +
Sbjct: 871 SEE 873


>gi|116071053|ref|ZP_01468322.1| DNA gyrase subunit A [Synechococcus sp. BL107]
 gi|116066458|gb|EAU72215.1| DNA gyrase subunit A [Synechococcus sp. BL107]
          Length = 876

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/920 (39%), Positives = 541/920 (58%), Gaps = 66/920 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        + ++ I    + +EM  SY+ YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADSVGPGGGGPGDSDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I+NP+I    LM +I GPDFPTG  ILGRTG
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLMALINNPEISDQELMTLIPGPDFPTGGQILGRTG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y +GRGS+ +RGV+ +E        DR+ +++T +PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLSGRGSVTMRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L  R                            LS VQ  AIL+++L RLT L  D 
Sbjct: 421 ARTQLQDRH--------------------------GLSAVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+LGII++EL  +++    PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVLGIIQEELGQLRERHSVPRRTEILDLAGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++   E     ++  ++  T
Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 QGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLAD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L KGD ++SM ++    AD                       
Sbjct: 692 GELRPL-GRTARGVRSMNLRKGDSLVSMDVLPAELAD----------------------- 727

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I +  +D     +  +     +  +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 728 QIAASADDVGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 787

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 788 KF--RTDADELVGLRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDR 845

Query: 891 VVSVERI-RESEIVDEAEST 909
           +  V  +  E+E  D+ E++
Sbjct: 846 LADVVLVPPEAETDDDNEAS 865



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/259 (19%), Positives = 93/259 (35%), Gaps = 29/259 (11%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G++KR  LS +   R  G     + + D D +T + +     SVL  
Sbjct: 621 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEDGDALTWVRLSIPGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERIT------------------- 631
           S  G    ++     L      ARG   +N+   +    +                    
Sbjct: 679 SKAGMTIHFRLADGELRPLGRTARGVRSMNLRKGDSLVSMDVLPAELADQIAASADDVGD 738

Query: 632 --TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILS 686
                   E   +    +V+ A+  G  +R  ++ F    R+G    AMK  +  DE++ 
Sbjct: 739 GDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVG 798

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +       ++LL ++ G  VR    AI     R + GVR   L KGD++  + +V     
Sbjct: 799 LRVLGAGEELLLVSEKGVIVRTSADAI-PQQSRAATGVRLQRLDKGDRLADVVLVPPEAE 857

Query: 747 DYDERICYMKHMSAQRRLI 765
             D+     +  S      
Sbjct: 858 TDDDNEASAEESSEPSAEG 876


>gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977]
 gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium
           abscessus]
          Length = 839

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/917 (36%), Positives = 509/917 (55%), Gaps = 93/917 (10%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+  +    ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ 
Sbjct: 1   MTDTTLPPGGDDAVDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS
Sbjct: 61  MYDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              DP AA RYTE RL   A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG 
Sbjct: 121 PGNDPAAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRT 235
           GGIAVGMATN+P HNL E+ +     +DN     +  L A+ E I GPDFPT  +I+G  
Sbjct: 181 GGIAVGMATNMPPHNLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGTQ 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI +AY TGRGSI +RGV+ IE+ S  R  +V+TE+PYQVN    +  IAE VR+ +I  
Sbjct: 241 GIHDAYTTGRGSIRMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAG 300

Query: 296 IADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+++ D+ SDR G R+V+ LKR A A V+LN LY++T LQ+ F  NM+++    P    L
Sbjct: 301 ISNIEDQSSDRVGLRIVVVLKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRL 360

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +++ +V  + +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR
Sbjct: 361 DQLIRLYVNHQLDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIAR 420

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L++                           + + E+Q +AIL+++L RL  L R  I 
Sbjct: 421 TGLIE--------------------------LLDVDEIQAQAILDMQLRRLAALERQKII 454

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           ++L  +  EI +  DIL+   R   I+K EL  + ++    RRTRI+    D+ DED I 
Sbjct: 455 DDLAKIEAEIADLEDILAKPERQRAIVKDELAEITEKYGDDRRTRIISADGDVADEDLIA 514

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++
Sbjct: 515 REDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVKHFFVCSTHDWILFFTT 574

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ K + LP  +  ARG+ + N+L+    ERI  ++     E   +  Y+V ATK+
Sbjct: 575 KGRVYRAKAYDLPEAARTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATKN 631

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
           G V+++KL++F      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   
Sbjct: 632 GLVKKSKLTEFDSNRSGGLVAVNLRDGDELVGAVLCSAEDDLLLVSAHGQSIRFSATDEA 691

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D ++S+ +V                               
Sbjct: 692 LRPM-GRATSGVQGMRFNGEDDLLSLNVVREGT--------------------------- 723

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                     ++L  +  G+ KRT+  ++ +  R GKG+     
Sbjct: 724 --------------------------YLLVATSGGYSKRTAIEEYPVQGRGGKGVLTVQY 757

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 G+LV    V++  ++  ++  G +IR    ++R A R TKGV + +  + + ++
Sbjct: 758 DPR--RGSLVGALVVDEESELYAITSGGGVIRTIAKQVRKAGRQTKGVRLMNLGEGDTLL 815

Query: 893 SVERIRESEIVDEAEST 909
           ++    +    D  E  
Sbjct: 816 AIAHNADEGDADPDEDA 832


>gi|113952792|ref|YP_730186.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113880143|gb|ABI45101.1| DNA gyrase, A subunit [Synechococcus sp. CC9311]
          Length = 892

 Score =  837 bits (2162), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/920 (39%), Positives = 533/920 (57%), Gaps = 70/920 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPVGPGSGGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL +R P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPSRIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE++ G +A+I NP+I    LM +I GPDFPTG  ILGR+G
Sbjct: 181 NGSAGIAVGMATNIPPHNLGELITGLLALIRNPEITDQELMALIPGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV+ IE        DR+ +V+T +PYQ NKAAM+E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVAGIETIEAPGRPDRDAVVITALPYQTNKAAMIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G RVV+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRVVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNSEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLEFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L +R                            LS VQ  AIL+++L RLT L  D 
Sbjct: 421 ARTQLQERH--------------------------GLSAVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  ++D    PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIEDELGQLRDRHAVPRRTEILDLAGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++   E     ++  ++  T
Sbjct: 575 SDRGVSYAVPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ ++ G  + F +S 
Sbjct: 632 TGGYIKRTRLSAFSNIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L +GD ++SM ++    AD                       
Sbjct: 692 NELRPL-GRTARGVRSMNLREGDSLVSMDVLPAELADQIAA------------------- 731

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                   S  E +   +  +    +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 732 --------SVDEDDEGSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 784 KF--RTDADELVGLRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDR 841

Query: 891 VVSVERI-RESEIVDEAEST 909
           +  V  +  E+E  D+ ES 
Sbjct: 842 LADVVLVPPEAETDDDTESD 861



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 98/275 (35%), Gaps = 25/275 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  GY+KR  LS +   R  G     + + + D +T + +     SVL  
Sbjct: 621 FNDDTDLLMLTTGGYIKRTRLSAFSNIRSNG--LIAIGLEEGDALTWVRLAVPGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILS---------LNQGERITTIMPFPEDES 641
           S  G    ++     L      ARG   +N+           L             ED+ 
Sbjct: 679 SRAGMTIHFRLSDNELRPLGRTARGVRSMNLREGDSLVSMDVLPAELADQIAASVDEDDE 738

Query: 642 SWNN--------LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETC 690
             +          +V+ A+  G  +R  ++ F    R+G    AMK  +  DE++ +   
Sbjct: 739 GSDGGESAAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVGLRVL 798

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
               ++LL ++ G  VR    AI     R + GVR   L KGD++  + +V       D+
Sbjct: 799 GAGEELLLVSEKGVIVRTGADAI-PQQSRAATGVRLQRLDKGDRLADVVLVPPEAETDDD 857

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                              E+  + ++ S      
Sbjct: 858 TESDSAGEPNSNSAPDVVAEQAATPEDLSEPSAED 892


>gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 827

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/896 (39%), Positives = 536/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVISIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SE G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 709 -----------ADDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+  +   
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 829

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/888 (42%), Positives = 545/888 (61%), Gaps = 88/888 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY 
Sbjct: 6   NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  V +IDNP  +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R 
Sbjct: 186 HRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  I+++RDESDR+G RVVI
Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+ +            
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL R+ I NE   L  EI+    IL 
Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILR 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 459 SEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  
Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +      +  + F TK+G ++R  LS+F  I   G
Sbjct: 579 AIGKAVVNLINLAPDEKIMATITTKDFN---EDKSIAFFTKNGIIKRTNLSEFKNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +  +     IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V +                                               
Sbjct: 695 PKDYVIGATVVSN----------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 708 -----ENEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCP 807


>gi|289552256|ref|ZP_06441466.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
 gi|297729443|ref|ZP_06958561.1| DNA gyrase subunit A [Mycobacterium tuberculosis KZN R506]
 gi|289436888|gb|EFD19381.1| DNA gyrase subunit A gyrA [Mycobacterium tuberculosis KZN 605]
          Length = 838

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/913 (37%), Positives = 508/913 (55%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY T RGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTSRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  V+  G +IR    ++R A R TKGV + +  + + +++
Sbjct: 757 RR--RGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814

Query: 894 VERIRESEIVDEA 906
           + R  E    D A
Sbjct: 815 IARNAEESGDDNA 827


>gi|319950291|ref|ZP_08024211.1| DNA gyrase subunit A [Dietzia cinnamea P4]
 gi|319436047|gb|EFV91247.1| DNA gyrase subunit A [Dietzia cinnamea P4]
          Length = 842

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/917 (37%), Positives = 516/917 (56%), Gaps = 87/917 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +      I  V I  EMQ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTDTTLPPEAGGHDRIEPVDIQAEMQRSYIDYSMSVIVGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG++AIYD L R+AQ W++R  +++GQGNFGS 
Sbjct: 61  WDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWAMRYPMVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTEC++   A  ++ D+ K+TVDF+PNYDG   EPVVL +R PN+LVNG  
Sbjct: 121 GNDGAAAMRYTECKMTPLAMEMVRDIDKNTVDFQPNYDGKTSEPVVLPSRIPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT +P HNL EV +     +DNP    +  L A ME I+GPDFPT   I+G  G
Sbjct: 181 GIAVGMATKMPPHNLREVAEAIYWCLDNPDASEEETLAACMERIKGPDFPTHGYIVGDQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY+TGRGSI +RG + IE+  G+R  IV+TE+PY+VN   M+  IAE +R+ +I  I
Sbjct: 241 IKDAYSTGRGSIRMRGKTSIEE-EGNRTVIVITELPYEVNPDNMILSIAEQLRDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SKIDDESSDRVGLRIVVTLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLALN 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + EV+VRRT+YLL++A  RAH+L GL  A+  LDEV+ +IR S   E AR 
Sbjct: 360 HLVRLYVAHQVEVIVRRTQYLLDEAEKRAHILRGLVKALDALDEVIALIRRSETVEIARE 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                     G    + + + Q +AIL+++L RL  L R  I +
Sbjct: 420 --------------------------GLKDLLEIDDDQAQAILDMQLRRLAALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L ++ +EI +  DIL+   R   I+  EL  + ++    RRTRI+    D+ DED I R
Sbjct: 454 QLAAIELEIADYKDILAKPERQRAIVGDELREIVEKYGDDRRTRIIPADGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTRTDLYRAQKRGGKGVRGAELKQDDIVRHFFVSSTHDWLLFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRIKAYELPEANRTARGQHVANLLAFQPEERIAGVIRIKSY---QDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L D+      G IA+ L   DE++       ++D+LL ++ GQ +RF  +   +
Sbjct: 631 LVKKSRLEDYDSPRSGGLIAVNLRDGDELVGAALAGPDDDLLLVSEKGQSIRFHANDDTL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+    GD ++SM++V    +D ++                       
Sbjct: 691 RPM-GRATSGVMGMRFNDGDALLSMSVVRADTSDQEKY---------------------- 727

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +E+G+ KRT+  ++    R GKG+      
Sbjct: 728 -------------------------FLLVATERGYSKRTALSEYTAQGRGGKGVLTLMFD 762

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV    V   D++  ++  G +IR    ++R A R TKGV + + A+ + +++
Sbjct: 763 P--KRGKLVGATIVELQDELYAITSSGGVIRTFAKQVRKAGRQTKGVRLMNLAEGDSLLA 820

Query: 894 VERIRESEIVDEAESTE 910
           + R  +    ++    E
Sbjct: 821 IARNADEPDDEDKAEAE 837


>gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
 gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE]
          Length = 871

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/930 (38%), Positives = 525/930 (56%), Gaps = 106/930 (11%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +       EE          +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVH
Sbjct: 1   MADENSPVTPEEVPAVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++ 
Sbjct: 61  RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDS 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN
Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G    +++P+   D L++     I+GPDFPTGA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +++GR GI++AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV+
Sbjct: 241 LVVGRNGIEDAYRTGRGSITMRAVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVK 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + +I  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F  NM+AL    
Sbjct: 300 DGKIGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S 
Sbjct: 360 PRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSN 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E+Q  AILE++L RL  L
Sbjct: 420 TVEIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I  E + L  +I +   IL+S      I+ +EL ++ D+    RR+++V    DM 
Sbjct: 454 ERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFGDDRRSKLVPFEGDMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 VEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP     ARG+ + N+L+    E+I  I+   + +      Y+
Sbjct: 574 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYD---AAPYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLG 703
           V ATK G V++  L D+      G IA+ L        DE++  E  + E+D+LL ++  
Sbjct: 631 VLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISRKA 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF  +   +R   GR + GV+G+S  +GD+++SM +V                    
Sbjct: 691 QSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT---------------- 733

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                F+ T ++ G+ KRT+  ++R+  
Sbjct: 734 -------------------------------------FVFTATDGGYAKRTAVDEYRVQG 756

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R T GV 
Sbjct: 757 RGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQ 814

Query: 882 IFSTAKDERVVSVERIRESE-IVDEAESTE 910
           + +  K + VV + R  E+    +E + TE
Sbjct: 815 LINLGKRDAVVGIARNAEAGREAEEVDGTE 844


>gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829]
 gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
 gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae
           DSM 15829]
          Length = 945

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/897 (40%), Positives = 538/897 (59%), Gaps = 87/897 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    ++ EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  +   + + K A
Sbjct: 97  LKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSA 156

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG+++IYDA+ RMAQ++S+RL L++G GNFGS+DGDPPAA RYTE RL
Sbjct: 157 WTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRL 216

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  +L DL K+TVD +PNYD S QEP VL AR+PN+LVNG  GIAVGMATN+P HNL
Sbjct: 217 THAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNL 276

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV      +IDNPD  ++ LM+++ GPDFPTG +I+G  GI++AY TGRGSI IR   H
Sbjct: 277 AEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGTDGIRDAYTTGRGSITIRSKVH 336

Query: 256 IEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E    G R+++V+TEIPYQVNK  + E+IA+ V EKRI  I+D+RDES+R+G R+VI+L
Sbjct: 337 VENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVIDL 396

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K GA   V+LN LY+ T LQ  F V  +AL    P   TL  ++  ++  ++++V RRT+
Sbjct: 397 KSGAVPQVVLNNLYKRTQLQVSFGVIDLALVDGVPRTLTLREMIYYYIEHQKDIVTRRTQ 456

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  R H+L GL IAV N+DEVV IIR S + + A++ + +R              
Sbjct: 457 FDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNER-------------- 502

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         + ++Q  AIL++RL RLTGL R+++  ++  L   I+   D+L+  
Sbjct: 503 ------------FGIDDIQGEAILQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHP 550

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPL 553
            +LL +IK+EL  +       RRT+I    +   + ED I  EDMV+TV+H  Y+KR+P+
Sbjct: 551 QKLLEVIKEELTEISTRFSDKRRTQISALGVQNLDIEDLIAEEDMVITVTHASYIKRLPV 610

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q+RGGKG  G+ ++D DFV ++F+ STH  VLFF++ G VY+ KV  LP+GS  A
Sbjct: 611 ATYKSQKRGGKGVQGLSLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHA 670

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG ALIN+L L++GE  T ++   +        +++FATK G V++  +SD+ +  R G 
Sbjct: 671 RGSALINVLPLSEGEYPTAVITTRDFP---AEEHLMFATKSGMVKKTAMSDYDKSRRDGL 727

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE+++V    +   ++L +  G+ + F  S IR   GR + GVRGI+L  G 
Sbjct: 728 IAINLKDGDELVNVRRVKESEYVILCSSAGKAIMFEESDIRP-TGRGTSGVRGITLKDGA 786

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++ M I                                                     
Sbjct: 787 TMLGMEISNGKGD----------------------------------------------- 799

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V+E G+GKRT   ++ +  R G G+    +++  + G L A   V    ++
Sbjct: 800 ------LLVVTEHGYGKRTPVSEYPLQKRGGLGVNTIAMTQ--KKGKLSACRVVGPQHEL 851

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++VS++G +IRV   +I + SRAT+GV I + A+ + V ++ R+   +  D  E  +
Sbjct: 852 MIVSEEGVMIRVQSQDISLLSRATQGVKIMNLAESDSVSALARMHIHKKKDTNEQPD 908



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/254 (20%), Positives = 109/254 (42%), Gaps = 18/254 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E+ ++  +  G VK+  +S Y   RR G     + ++D D + ++  V     V+  
Sbjct: 696 FPAEEHLMFATKSGMVKKTAMSDYDKSRRDG--LIAINLKDGDELVNVRRVKESEYVILC 753

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G   K  ++      P  RG + +  ++L  G  +  +      E S     ++  T
Sbjct: 754 SSAG---KAIMFEESDIRPTGRGTSGVRGITLKDGATMLGM------EISNGKGDLLVVT 804

Query: 653 KHGNVRRNKLSDFIQINRSG----KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +HG  +R  +S++    R G     IAM      ++ +      ++++++ ++ G  +R 
Sbjct: 805 EHGYGKRTPVSEYPLQKRGGLGVNTIAMTQKKG-KLSACRVVGPQHELMIVSEEGVMIRV 863

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISG 767
               I + + R + GV+ ++LA+ D V ++A +  H   D +E+    +       L   
Sbjct: 864 QSQDISLLS-RATQGVKIMNLAESDSVSALARMHIHKKKDTNEQPDSNQPQLPLDFLSQK 922

Query: 768 DTEEITSLKNDSSV 781
             EE  ++ +D  +
Sbjct: 923 HQEEEINIGDDEQI 936


>gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101]
 gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101]
          Length = 879

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/903 (38%), Positives = 540/903 (59%), Gaps = 76/903 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV     
Sbjct: 2   SEGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WS+R LL++GQGNFGSVDGD PAA RY
Sbjct: 62  HKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  R P +LVNG  GIAVGMATN+
Sbjct: 122 TEARMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G +A +DN DI++D LM  I+ PDFPTG +I G  G++ A+ TGRG IV+
Sbjct: 182 PPHNLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIYGYEGVREAFKTGRGRIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+    RE I+VTEIPYQVNKA M+++ A+LV EK+I  IA++RDESDR G R+
Sbjct: 242 RAKVGFEEVE-GRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LKR A+ +V+LN LY+YT LQS FSVN +AL   +P+   L  ++  F+  R +VVV
Sbjct: 301 VYILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGRPQLLNLKDMIHYFIEHRHDVVV 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R          
Sbjct: 361 RRTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIER---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q RAI+E+RL +LTGL +D +R E + L   I+    +
Sbjct: 411 ----------------FKLSDIQARAIVEMRLRQLTGLEQDKLRAEYDELMKLIEHLKAL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  +  + +IK+EL  ++D+    RR++I     D+  ED I  E++V+T+SH GY+KR
Sbjct: 455 LADVNLRIDLIKEELTEIRDKYGDDRRSQIEYSGGDVSIEDLIADENVVITISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y+ Q RGG G+     RD+DF+  +F+ + H  ++FF+  G  +  +V+ +P GS
Sbjct: 515 TNLSEYKTQNRGGVGQKSAGTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEGS 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             A+G+A+ N++++   +++   +   +  D+   N   +V  TK G V++  L  + + 
Sbjct: 575 KTAKGRAIQNLINIESDDKVKAFICTQDLKDKDYINTHNLVMVTKQGQVKKTSLEKYSKP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ +   DE+L  +    E+ I+L  K G+ VRF  +  R   GR + GVRGI+
Sbjct: 635 RANGVAAITIKEGDELLEAKLTDGESQIILAVKSGKLVRFEETKTRPM-GRTASGVRGIT 693

Query: 729 LAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L    D+VI M  V   D    + +   ++   +R  +  D  E                
Sbjct: 694 LKDDTDEVIGMVTVGKNDVADSQILVVTENGYGKRTKLVDDDGEDV-------------- 739

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                                        +RI+NR GKG++  +++  ++ G L+++  V
Sbjct: 740 -----------------------------YRITNRGGKGVKTLNIT--DKTGKLISINAV 768

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            D+D +++++  G  IR+ + ++R+  RAT+GV + +    + + +V ++ + +  +   
Sbjct: 769 TDSDDLMIINKSGLTIRMAIEDLRVMGRATQGVRLINLKGKDSIAAVTKVMKDDAEEVVV 828

Query: 908 STE 910
             +
Sbjct: 829 DED 831


>gi|78213459|ref|YP_382238.1| DNA gyrase subunit A [Synechococcus sp. CC9605]
 gi|78197918|gb|ABB35683.1| DNA gyrase, A subunit [Synechococcus sp. CC9605]
          Length = 865

 Score =  837 bits (2161), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/920 (39%), Positives = 528/920 (57%), Gaps = 76/920 (8%)

Query: 1   MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+ +             I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MTDSVGPGSGGPGDSDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP+I    L+++I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELIDGLQALIANPEITDQELIQLIPGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y  GRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAELV +K+
Sbjct: 241 IRETYLGGRGSVTMRGVANIETIEAPGRPDRDAVIITELPYQTNKAALIERIAELVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS  M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAYMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L  R                            LS++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQDRH--------------------------GLSDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  +++   TPRRT I++    + D D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQSELAQLQERYPTPRRTEILDLGGGLSDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + ED V      + H +++ F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEDAVKLFISCNDHDTLVLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E ITT++P  E     ++  +V  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRAAKGTPVVQLLPIPREEAITTLIPVSEFS---DDTDLVMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F +S 
Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRLAVPGDSVLIGSKAGMTIHFRLSD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L   D ++SM ++    AD        +  +A          
Sbjct: 692 EELRPL-GRTARGVRSMNLRDADALVSMDVLPVELADQVAASADDEDDAASE-------- 742

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                       ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 743 --------------------------GPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 776

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 777 KF--RTDADELVGLSVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDR 834

Query: 891 VVSVERIRESEIVDEAESTE 910
           ++ V  +      D A+ TE
Sbjct: 835 LLKVVLVPPEAEDDSADDTE 854


>gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331]
          Length = 875

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/933 (38%), Positives = 524/933 (56%), Gaps = 109/933 (11%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +       EEE         +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVH
Sbjct: 1   MADENTPVMPEEEPTVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++ 
Sbjct: 61  RRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDS 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL AR PN
Sbjct: 121 NGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G    ++NP+   + L++     I+GPDFPTGA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+P+Q N   + +KIA+LV+
Sbjct: 241 LVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVK 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQS F  NM+AL    
Sbjct: 300 DGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  ++EV+ +IR S 
Sbjct: 360 PRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSN 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E+Q  AILE++L RL  L
Sbjct: 420 TVEIAREGLM--------------------------GLLEIDEIQANAILEMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               I  E + L  +I E  +IL+S  +   I+ +EL ++ D+    RR+++V    DM 
Sbjct: 454 EHQKITAEHDELQAKINEYNEILASPEKQRQIVSEELAAIVDKFGDDRRSKLVPFDGDMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 IEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP     ARG+ + N+L+    E+I  I+   + E      Y+
Sbjct: 574 LLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEQIAQILAIRDYE---AAPYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLG 703
           V ATK G V++  L D+      G IA+ L        DE++  E  + E+D+LL +K  
Sbjct: 631 VLATKGGLVKKTSLKDYDSPRSGGVIAINLRETESGADDELIGAELVSAEDDLLLISKKA 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF  +   +R   GR + GV+G+S  +GD+++SM +V                    
Sbjct: 691 QSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRP------------------ 731

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                F+ T ++ G+ KRT+  ++R+  
Sbjct: 732 -----------------------------------GTFVFTATDGGYAKRTAVDEYRVQG 756

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R T GV 
Sbjct: 757 RGGLGIKAAKIVE--DRGSLVGALVVEEADEILAITLGGGVIRTRVNEVRETGRDTMGVQ 814

Query: 882 IFSTAKDERVVSVERIR----ESEIVDEAESTE 910
           + +  K + VV + R      E+E VD  +  E
Sbjct: 815 LINLGKRDAVVGIARNAEAGREAEEVDGTDEAE 847


>gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 870

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/897 (39%), Positives = 508/897 (56%), Gaps = 90/897 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  + +       I  V I  EMQ SYL YA++VI+GRA+PD+RDGLKPVH+R+L+ M  
Sbjct: 14  DSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAMYD 73

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G   ++ Y KCAR+ G+VMG YHPHG++AIYD L R+AQ WS+R+ L++  GNFGS   
Sbjct: 74  GGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSAGN 133

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DP AA RYTEC+L   A  +L D+ KDTVDFRPNYDG   EPVVL AR+PN+LVNG  GI
Sbjct: 134 DPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSSGI 193

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIK 238
           AVGMATNIP HNL EV DG    +DNP+   + L++     ++GPDFPT  +I+G+ GI+
Sbjct: 194 AVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKRGIE 253

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   +  KIA+LV++ +I  IAD
Sbjct: 254 EAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITGIAD 313

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           +RDES  R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    L  +
Sbjct: 314 VRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLRLDQM 373

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           ++ +V  + EV+VRRT+YLL KA +RAH+L  L  A+  +DEV+ +IR S + + AR  L
Sbjct: 374 IRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQARTGL 433

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M                            + + ++Q RAIL+++L +L  L R+ +  E 
Sbjct: 434 M--------------------------DLLEIDDIQARAILDMQLRKLAALERNALTAEY 467

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           + L  +I +  DIL S +R   II++EL  + ++    RRT I+    DM  ED I  ED
Sbjct: 468 DELMAQIADYNDILESDTRQRSIIREELGEIVEKYGDERRTHIIPFEGDMRMEDFIAEED 527

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT+S  GY KR  +  YRAQ+RGGKG  G  ++ +D V   F+ +TH  +L F++ G 
Sbjct: 528 VVVTISRGGYAKRTRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGR 587

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K + LP  +  ARG+ + N+L    GE I  IM   + E      Y+V AT+ G V
Sbjct: 588 VYRTKAYELPEAARDARGQHVANLLPFQPGEEIAQIMALRDYE---AAPYLVLATREGLV 644

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRV 715
           ++++L DF     +G IA+ L   DE+++      ++D+LL +   Q +RFP S   +R 
Sbjct: 645 KKSRLEDFDSARAAGIIAINLREGDELIAARLVFPDDDLLLISSDAQAIRFPASDESLRP 704

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV G+   + D ++SM ++   D   D                          
Sbjct: 705 M-GRATSGVIGMRFLEDDYLLSMDVIRPGDGSTD-------------------------- 737

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L  +E G+ KRT S  + + NR GKG+    V + 
Sbjct: 738 ------------------------VLVTTENGYAKRTPSDQYPVQNRGGKGVLTAKVVEA 773

Query: 836 NEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              G LV    ++   D++  ++  G +IR   +E++ + R T GV + + AK  ++
Sbjct: 774 --RGKLVGALMIDPEVDEVFAITSAGGVIRTGADEVKRSGRTTMGVRLMNLAKGNKI 828


>gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 876

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/912 (39%), Positives = 516/912 (56%), Gaps = 102/912 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 19  RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 78

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP AA RYTEC+
Sbjct: 79  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECK 138

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  +L D+ ++TVDF+ NYDG  QEP VL +R+PN+L+NG  GIAVGMATNIP HN
Sbjct: 139 LMTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHN 198

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G    +++PD   + L++     I+GPDFPTGA+++GR GI+ AY TGRGSI +
Sbjct: 199 LREVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 258

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R
Sbjct: 259 RAVVEVEEI-HNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 317

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 318 LVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEVI 377

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 378 VRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEVARGGLM----------- 426

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + E+Q  AILE++L RL  L R  I  E + L  +I E   
Sbjct: 427 ---------------DLLQIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNA 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S  GYVK
Sbjct: 472 ILASPERQRAIVSEELAALVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTISRGGYVK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 532 RTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDA 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+ + N+L+    E+I  I+   + E      Y+V ATK G V++  L D+    
Sbjct: 592 GRDARGQHVANLLAFQPDEQIAQILAIRDYE---AAPYLVLATKAGLVKKTALKDYDSPR 648

Query: 670 RSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722
             G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +   +R   GR + 
Sbjct: 649 SGGVIAINLRETEDGSDDELIGAELVSSEDDLLLISKKAQSIRFTATDDALRPM-GRATS 707

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+S    D+++SM +V                                         
Sbjct: 708 GVKGMSFRADDELLSMNVVRPGT------------------------------------- 730

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           F+ T ++ G+ KRT   ++R+  R G GI+A  + +  + G+LV
Sbjct: 731 ----------------FVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DRGSLV 772

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---- 898
               V + D+I+ ++  G +IR  VNE+R   R T GV + +  K + VV + R      
Sbjct: 773 GALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEAGS 832

Query: 899 ESEIVDEAESTE 910
           E + +DEA   E
Sbjct: 833 EDDEIDEAVDAE 844


>gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 836

 Score =  836 bits (2159), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/917 (38%), Positives = 515/917 (56%), Gaps = 96/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+          + I  V I  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDVNTP----LVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+R+ G+VMG YHPHG+++IY  + R+AQ W+LR  LI+GQGNFGS 
Sbjct: 57  YDGGYRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ KDTVDF+PNYDG  QEP+VL +R+PN+LVNG  
Sbjct: 117 GNDMPAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV DG    + NP+   + L+E     ++GPDFPTGA+I+GR G
Sbjct: 177 GIAVGMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIVGRRG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R +  +E+ +  R+ +VVTE+PYQVN   +   IAE V+E RI  I
Sbjct: 237 IDDAYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGI 296

Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDES  + G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P    L 
Sbjct: 297 ADVRDESSSRVGQRLVIVLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDGVPRTLRLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +VA + EVVVRRT+YLL KA +RAH+L  L  A+  +DEV+ +IR SP+   A+ 
Sbjct: 357 QFVRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q +AIL+++L +L  L R  I +
Sbjct: 417 GLMA--------------------------LLEIDEIQAQAILDMQLRKLAALERQQITD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E ++L   I +   IL+S  R   I+  EL  +  +    R+T I+    DM  ED +  
Sbjct: 451 EYDTLMAHITDYQAILASPERQRTIVFDELSEIVSKYGDERKTEIIAYEGDMSIEDLLAE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           EDMVVT++  GY KR    +YRAQ+RGGKG  G  +R +D V   F+ +TH  +LFF++ 
Sbjct: 511 EDMVVTITRGGYAKRTNTDLYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNK 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ L N+L++   E +  ++   + E      Y+V AT+ G
Sbjct: 571 GRVYRVKAYELPDSGRDARGQHLANLLAMQPDEVVMEVLDLRDYEV---APYLVLATRSG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++ +LS++      G IA+ L   DE+++    ++E+D+LL ++  Q +RF  S   +
Sbjct: 628 LVKKTRLSEYDSPRSGGLIAINLREDDEVIAARLVSEEDDLLLVSRGAQSIRFTASDEAL 687

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+    GD++++M  +   D                            
Sbjct: 688 RPM-GRATSGVIGMRFLGGDELLAMNRIGDGDD--------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +L  +E G+ KRT +  + +  R GKG+    + 
Sbjct: 720 --------------------------VLIATEGGYAKRTPADQYPVQGRGGKGVLTAKI- 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            ++  G LV    V   D++  ++  G +IR    EI+ + R T GV + + A+ + VV+
Sbjct: 753 -VSARGKLVGAAMVRPEDEVFAITSAGGVIRTSAGEIKQSGRQTMGVRLMNLAEGDSVVA 811

Query: 894 VERIRESEIVDEAESTE 910
           + R  E+   +  ++ E
Sbjct: 812 LARNAEALETEHNDALE 828


>gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63]
          Length = 856

 Score =  835 bits (2158), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/904 (39%), Positives = 559/904 (61%), Gaps = 87/904 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             ++ +   I  V + +EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q+G++
Sbjct: 4   EQNQNKNSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMNQIGLD 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCA   G+V+G YHPHG+A++YDA+ R+AQD+S+R +L++G GNFGSVDGDPPA
Sbjct: 64  PSKPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDPPA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K +  +L D+ K+TVDF  NYD   +EP VL +R+PN+LVNG  GIAVGM
Sbjct: 124 AYRYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT IP HNLGE +D    +IDNPD +L  +ME + GPDFPTG +I+GR+GI+ AYATGRG
Sbjct: 184 ATEIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIMGRSGIRAAYATGRG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            I +R  + I +    R +I+VTE+PY+VNKA ++E IA+LV++KRI  I+++ D SDR+
Sbjct: 244 KITVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIEDHSDRK 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G  + I++KR AS  ++LNQL+ YT LQ+ F   M+++   +P+  +L  +L+ ++ F+ 
Sbjct: 304 GMHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGEPKILSLKEMLQCYIEFQA 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT + L KARDRAH+L GL IA+  +DEV++IIR S +  +A+  LM+R      
Sbjct: 364 EVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLMER------ 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L +VQ +AI+++RL +LT + +  I +E+ +L  +I+E
Sbjct: 418 --------------------FGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEE 457

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L+IL+S  R L I+K+E++ ++++   PRRT I     +++ ED I +E+ V+T++  G
Sbjct: 458 YLEILASEPRQLEIVKEEIMQIRNKYADPRRTEICAVSGEVDIEDLIPQEECVLTLTQFG 517

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+    Y+ QRRGG+G SG+  R+ED   ++F++++H  VLFF+  G VY+ K + +
Sbjct: 518 YVKRLSADTYKIQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEV 577

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS Q++G  + N++ ++  E++T+++  PE +      Y+V  T+ G ++R +L+ + 
Sbjct: 578 PEGSRQSKGVNIANLIPISPDEKVTSMIRVPEFD---EEKYLVMVTRQGIIKRIELNAYN 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              + G IA++L+  DE+  V      + +++ TK G  +RF  + IR   GR + GV+ 
Sbjct: 635 TSRKGGLIALELNEGDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAM-GRQARGVKA 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L +GD V+ M++V                                             
Sbjct: 694 MALKEGDCVVGMSVVREGG----------------------------------------- 712

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +LTVSE G+G+ +S  D+R+ +R GKG+         + G + A+  
Sbjct: 713 ------------LVLTVSETGYGRLSSPDDYRVQSRGGKGLTNYHT---EKYGDVAAIKV 757

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           VN +D II++S++G +IR+    IR+ +R +KGV +     D+RVV++ R+   +  D+ 
Sbjct: 758 VNLDDDIIIISEEGIIIRIAAESIRVCARPSKGVTVMKVNGDDRVVTIARVPHIDGEDD- 816

Query: 907 ESTE 910
           ES E
Sbjct: 817 ESAE 820


>gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205]
          Length = 843

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/893 (40%), Positives = 526/893 (58%), Gaps = 67/893 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ GEV+GK
Sbjct: 1   MSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LL 143
           YHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSVD DPPAA RYTE RL+      LL
Sbjct: 61  YHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +D+  +TVDF  N+DGS QEP V+ AR P +L+NG  GIAVGMATNIP HNL E++DG +
Sbjct: 121 EDIESETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE----KT 259
           A+I NP++    L   + GPDFPTG  ILGR GI+  Y TGRGS+ +RGV+ IE    K 
Sbjct: 181 ALIANPELTDRELTGYVSGPDFPTGGQILGRRGIREMYETGRGSVTMRGVAAIETVEAKG 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             DR+ +++TE+PYQ NKAA++E+IAELV +K++  IAD+RDESDR G R+VIEL+R A 
Sbjct: 241 RPDRDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAY 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V+LN L++ T LQS FS  M+AL   +P   TL  +L+ F+ FR E + RRT+YLL K
Sbjct: 301 PQVVLNNLFKLTPLQSNFSAYMLALVNGEPVLLTLRKMLQVFLDFRVETIERRTRYLLRK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R H+L+GL IA+ NLD ++ +IR + +  +AR EL+++                   
Sbjct: 361 AEERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+++L RLT L  D IR E   L  +I +  DIL+ + R+ G
Sbjct: 402 -------FGLSEVQADAILQMQLRRLTALEADKIRLEHEDLLAKITDYKDILARKERVYG 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +I  EL  ++   D+PRRT I++    +ED D I  E  VV ++  GY+KR+P+S + A 
Sbjct: 455 LITDELGVIRSRYDSPRRTEILDVEGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEAT 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RG +G++G   + E+ V      + H S+L FS  G VY    +R+P+ S  A+G  ++
Sbjct: 515 SRGTRGKAGTKTQGEEAVRLFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +L + + E+IT+++   E      +  +V  T  G V+R +LS F  I  +G IA+ L+
Sbjct: 575 QLLPIPREEQITSLLAVSEFT---EDAVLVMLTSGGYVKRTRLSAFANIRSNGLIAISLE 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVIS 737
             D +  V      + +L+ ++ G  + F +S   +R   GR + GVR ++L  GDQ++S
Sbjct: 632 EGDALTWVRLAQPGDSVLIGSRNGMTIHFRLSDEELRPL-GRTARGVRAMNLRPGDQLVS 690

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M ++    AD  E                             S   +  ++  +    + 
Sbjct: 691 MDVLPVELADRVE----------------------------GSSAASDEDDTEEVAPSEG 722

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            ++L  S  G GKR     FRI  R+G G+RA       +   LV +  +   ++++LVS
Sbjct: 723 PWVLVASASGLGKRVPVDQFRIQKRAGMGLRAMKF--RRDGDVLVGLRVLGAGEELLLVS 780

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++G ++R+  + +   SRA  GV +      +R+  V  +  +   DE    +
Sbjct: 781 ERGVIVRMQADAVPQQSRAATGVKLQRLDSGDRLSEVVLVPPALEEDEESGED 833


>gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
 gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC
           29799]
          Length = 850

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/907 (39%), Positives = 540/907 (59%), Gaps = 98/907 (10%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++      EE     + I    +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSKKPQYDPEEIRYPNQHIEVSPLVPEMEKSYIEYAMSVIVGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M +  +  +K + K A   G+V+G+YHPHG+A++YDAL R+AQD+S+R +L++G GNF
Sbjct: 61  YAMYEDNLTADKPFKKSATCVGDVLGRYHPHGDASVYDALVRLAQDFSMRYMLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGDPPAA RYTE RL K +  +L D+ KDTVD+ PN+D + +EP VL +R+PN+LVN
Sbjct: 121 GSIDGDPPAAYRYTEARLSKISDEMLRDIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNL EV++  + V+DNP+ +L  LME I+GPDFPT  +I+GR+GI
Sbjct: 181 GSSGIAVGMATNIPPHNLTEVINATICVLDNPEAELCDLMEHIKGPDFPTKGIIMGRSGI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AYATGRG + +R  +  E+   DR +I+VTEIPYQVNK  +++ +A+ V +KR+  I+
Sbjct: 241 RAAYATGRGRLCVRARTEFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG----YKPERFT 353
           D+RDESDR G R+VIELKR A+  V+LN+L+  T LQ+ F++NM+AL       +P   +
Sbjct: 301 DIRDESDRNGMRIVIELKRDANPQVVLNRLFAQTQLQTTFAINMLALVEVNGKLQPRILS 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++A++E+V++RRTKY L KA++RAH+L GL IA  N+DEV+ IIR   +   A
Sbjct: 361 LRHILDEYIAYQEQVIIRRTKYDLKKAQERAHLLEGLLIAQDNIDEVIHIIRSRYD--DA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +LM+R                            L +VQ +AIL++RL  L GL R+ +
Sbjct: 419 KEKLMER--------------------------FSLDDVQAQAILDMRLKALQGLDREKL 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            NE   L   I     +L S   L G++K EL++++D+    R T I +   +++ ED I
Sbjct: 453 ENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKYGDERVTEIQDVEDEIDIEDLI 512

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E+ V T++  GY+KR+P S Y+ QRRGGKG + +  ++ED+V  +F  STH  +LFF+
Sbjct: 513 EEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDTVFTASTHDFILFFT 572

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V+++K +++P     A+G  L+NIL +  GE++T ++   E      + Y+   T+
Sbjct: 573 NKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLREFP---EDRYLAMVTR 629

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G V+R +LS      ++G   + LD  DE+++V     +  IL+ T  G  + F  + +
Sbjct: 630 NGTVKRIQLSAINTARKAGIRCITLDEGDELIAVRETDGDQAILIATHDGMSICFKETDV 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR++ GVRGI L +GD VI  A                                  
Sbjct: 690 RCM-GRDACGVRGIKLREGDYVIGAA---------------------------------- 714

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RI---SNRSGKGIRA 829
                                     +L V+E G+GKRT   ++ R     NR G G++ 
Sbjct: 715 -------------------RAKAGHQVLMVTENGYGKRTDMDEYIRSDGPQNRGGYGLKG 755

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +V++  + G +V V  V+D D I++++D G +IR+ V+ I    RA +GV + +  +  
Sbjct: 756 YNVTE--KTGPVVGVKVVSDADDILVINDAGVIIRMAVSGISTYGRAAQGVKLMNLDEGV 813

Query: 890 RVVSVER 896
           +V+S  R
Sbjct: 814 KVISFAR 820



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +  D+ DE++ +     ++      K     RF +  ++      +  +  + L      
Sbjct: 399 IAQDNIDEVIHIIRSRYDD-----AKEKLMERFSLDDVQ------AQAILDMRLK----- 442

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            ++  +     + + +    +    Q+ L S +           ++     +ER  E++ 
Sbjct: 443 -ALQGLDREKLENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKYGDERVTEIQD 501

Query: 796 ------------KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +E+ + T++  G+ KR  +  ++   R GKGI A    + + +  +  
Sbjct: 502 VEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDTV-- 559

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRES 900
            F  + +D I+  ++KG + R    +I  A R  KG  + +       E+V ++  +RE 
Sbjct: 560 -FTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKGTNLVNILPVESGEKVTAMIHLREF 618

Query: 901 EIV 903
              
Sbjct: 619 PED 621


>gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162]
 gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162]
          Length = 837

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/917 (37%), Positives = 515/917 (56%), Gaps = 93/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    ++      I  V I  EMQ SY+ YA++VI+GRA+P++RDG+KPV RRIL+  
Sbjct: 1   MTDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   E MG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  YDAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTE RL   A  +L  + ++TVDF PNYDG  QEP VL AR PN+L+NG G
Sbjct: 121 GNDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +     ++N D      L+A ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGGQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY+TGRGSI +RGV  +E+ S    ++V+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 241 IKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 301 SKIEDQSSDRVGMRIVVRLKRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRTK+LL KA +RAH+L GL  A+  LDEV+ +IR S   E AR 
Sbjct: 361 QMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIART 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL+++L +L  L R  I +
Sbjct: 421 GLME--------------------------LLDVDELQANAILDMQLRKLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL    R   I++ EL  + ++    RRT+I+    D+ DED I R
Sbjct: 455 ELAEIEREIADLKDILDKPERQRAIVRDELGEIVEKFGDDRRTKIIAADGDVTDEDLIAR 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     +   +  Y+V ATK+G
Sbjct: 575 GRVYRAKAYELPEQSRTARGQHVANLLAFQPEERIAQVIQIKGYD---DAPYLVLATKNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L DF      G +A+ L   DE++     + E+D+LL +K  Q +RF  +   +
Sbjct: 632 LVKKSRLEDFDSNRSGGIVAINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEAL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++++ +V                                
Sbjct: 692 RPM-GRATSGVQGMRFNGDDQLLALNVVQE------------------------------ 720

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++L  +  G+ KRT+  D+ +  R GKG+      
Sbjct: 721 -----------------------DTYLLVATSGGYAKRTAMDDYPVQGRGGKGVLTIQFD 757

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV    VND  ++  ++  G +IR    ++R A R TKGV + +  +   +++
Sbjct: 758 P--KRGDLVGALIVNDETELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGTTLLA 815

Query: 894 VERIRESEIVDEAESTE 910
           + R  + E  + ++ TE
Sbjct: 816 IARNAD-ETDETSDETE 831


>gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
 gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045]
          Length = 864

 Score =  835 bits (2157), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/926 (38%), Positives = 518/926 (55%), Gaps = 102/926 (11%)

Query: 1   MTEHIISSDEEE----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +       EE     + +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MADENTPVTPEEGGVIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL +R+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    +++P+   + L+E     I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVAVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EVVVRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVTHQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                          G + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARGGLM--------------------------GLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E  +IL+S  R  GI+  EL ++ ++    R+T++V    DM  ED
Sbjct: 454 KIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAIVEKYGDDRQTKLVPYDGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTV+  GYVKR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVTRGGYVKRTKTDDYRAQKRGGKGVRGAKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + +      Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYD---AAPYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q +
Sbjct: 631 TKGGLVKKTPLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSSDDDLLLISKKAQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  +   +R   GR + GV+G+S  +GD ++SM +V                       
Sbjct: 691 RFTATDESLRPM-GRATSGVKGMSFREGDALLSMNVVR---------------------- 727

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                             F+ T ++ G+ KRT   ++R+  R G
Sbjct: 728 -------------------------------PGTFVFTATDGGYAKRTPVDEYRVQGRGG 756

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+A  + +  + G LV    V + D+I+ +S  G +IR  V+ +R   R T GV + +
Sbjct: 757 LGIKAAKIVE--DRGELVGALVVEETDEILAISLSGGVIRTRVSGVRETGRDTMGVQLIN 814

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
             K + VV + R  E+    E    +
Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGD 840



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 94/248 (37%), Gaps = 14/248 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +  R++    +L       +   +L  S
Sbjct: 625 PYLVLATKGGLVKKTPLKDYDSPRSGGVIAINLREREDGSDDELIGAELVSSDDDLLLIS 684

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +       +  P  R  + +  +S  +G+                  +V  AT 
Sbjct: 685 KKAQSIRFTATDESL-RPMGRATSGVKGMSFREGD------ALLSMNVVRPGTFVFTATD 737

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+     E++      + ++IL  +  G  +R  +
Sbjct: 738 GGYAKRTPVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDEILAISLSGGVIRTRV 797

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   GR+++GV+ I+L K D V+ +A    A  + +E    +          +  T+
Sbjct: 798 SGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTD 856

Query: 771 EITSLKND 778
           E  +   +
Sbjct: 857 EGEAPSAE 864


>gi|72382528|ref|YP_291883.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
 gi|72002378|gb|AAZ58180.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL2A]
          Length = 872

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/918 (38%), Positives = 537/918 (58%), Gaps = 73/918 (7%)

Query: 1   MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  +     E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I NP+++   LM II+GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLVELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  Y +GRGSI +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IA++V +K+
Sbjct: 241 IKETYLSGRGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  IAD+RDESDR G R+V+EL+R +   V+LN L++ T LQ+ FS NM+AL   +P   
Sbjct: 301 LEGIADIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVIL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L+ F+ FR E + +RTKYLL KA  R H+L+GL +A+  LDE++ +IR + +  T
Sbjct: 361 SLRKMLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+ +L +                             L+++Q+ AIL+++L RLT L  D 
Sbjct: 421 AKNKLQE--------------------------LHGLTDIQSDAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL+ + R+  I K EL  +K++ +T RRT I++    +ED D 
Sbjct: 455 IRLEHEDLVKKITDLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G++G   + E+ V      + H S+L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++     +   +  Y++  T
Sbjct: 575 SDRGISYALPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLSVSSFD---DENYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 RGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLND 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR++ GV+ ++L  GD ++SM ++    AD+ ++    +  S           
Sbjct: 692 SELRPL-GRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELHSESSESE----- 745

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                       ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 746 --------------------------GPWVLVASASGLGKRVPMTQFRLQKRAGMGLRAI 779

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS++G ++R   ++I   SRA  GV I      ++
Sbjct: 780 KF--RKDGDELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDK 837

Query: 891 VVSVERIRESEIVDEAES 908
           +  V  +   +I D+ E+
Sbjct: 838 LSEVVLVPPEQINDDDEN 855



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/255 (20%), Positives = 94/255 (36%), Gaps = 21/255 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E+ ++ ++  GY+KR PLS +   R  G     + + D D +T + +  +  SVL  
Sbjct: 621 FDDENYLLMLTRGGYIKRTPLSAFSKIRANG--LIAIGLEDGDALTWVRLAESGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN-------------ILSLNQGERITTIMPFP 637
           S  G    ++     L      ARG   +N                L      +      
Sbjct: 679 SKNGMTIHFRLNDSELRPLGRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELH 738

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKL-DSRDEILSVETCTQEN 694
            + S     +V+ A+  G  +R  ++ F    R+G    A+K     DE++ +    +  
Sbjct: 739 SESSESEGPWVLVASASGLGKRVPMTQFRLQKRAGMGLRAIKFRKDGDELVGLRVLGKGE 798

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           ++LL ++ G  VR     I     R + GVR   L  GD++  + +V     + D+    
Sbjct: 799 ELLLVSERGVIVRTSADKI-SQQSRAATGVRIQKLDNGDKLSEVVLVPPEQINDDDENQS 857

Query: 755 MKHMSAQRRLISGDT 769
                +     +   
Sbjct: 858 SSTKESINTDPTSKN 872


>gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
 gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702]
          Length = 878

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/908 (40%), Positives = 551/908 (60%), Gaps = 59/908 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  +       + +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +
Sbjct: 2   EKDVKEFSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
                +K Y KCA   GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDG
Sbjct: 62  ADNTSSKPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE R+ K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GI
Sbjct: 122 DPPAAYRYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNL EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY 
Sbjct: 182 AVGMATNIPPHNLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIMGYSGIRSAYY 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +RG + I +  G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDE
Sbjct: 242 TGRGKITLRGKAEIVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDE 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G R+V ELKR  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++
Sbjct: 301 SDKDGMRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYI 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AF+++++ RRT + L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R  
Sbjct: 361 AFQKQIITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFK 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                K L   + ++   +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  
Sbjct: 421 EDDLAKLLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIME 480

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + LDILSS  R+  IIK+E+ ++K++    RRT I     +++ ED I  E+ V+T 
Sbjct: 481 KINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECVLTY 540

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +++GY+KR P+ VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K
Sbjct: 541 TNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLK 600

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P GS Q+RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L
Sbjct: 601 CYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFA---ENKYFICVTKYGKIKRTPL 657

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            DF  + ++G  A+ L   DEI +      ++ I++ T LG  + F    IR   GR + 
Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAA 716

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR I L + D ++  A V   D                                     
Sbjct: 717 GVRAIKLREDDYIVGAAKVYSDDMR----------------------------------- 741

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILTV++KG+G+ ++  D+R+ NR G G++   +   ++ G + 
Sbjct: 742 -----------------ILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVC 782

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +  +D +IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E 
Sbjct: 783 GIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDET 842

Query: 903 VDEAESTE 910
            D  E  +
Sbjct: 843 ADIEEVEQ 850


>gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/900 (41%), Positives = 548/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE     +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L +R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ E    +  +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFE---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    +   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D                                            
Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
 gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489]
          Length = 829

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/888 (42%), Positives = 545/888 (61%), Gaps = 88/888 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV    KY 
Sbjct: 6   NQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ +AA  +L D+ KDTVDF PNYD + +EP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 126 AKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  V +IDNP  +L+ +++ + GPDFPTG +I G+ GI+ AY TGRG I +R 
Sbjct: 186 HRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIYGKNGIREAYETGRGRIKVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  I+++RDESDR+G RVVI
Sbjct: 246 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 305 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKIFTLLELLGLFISHRKSVVIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+DE+V +IR S +P+ A+  L+ +            
Sbjct: 365 TIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQ------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL R+ I NE   L  EI+    IL 
Sbjct: 413 --------------FNLSEIQAQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILR 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L  IIK+ELL VK++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 459 SEDLLNKIIKEELLEVKEKFSTKRLTAIEEDYESIDMEDLIPNEAVVVTMSHRGYVKRVP 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH +++F ++ G +Y  KV+++P  S  
Sbjct: 519 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +      +  + F TK+G ++R  LS+F  I   G
Sbjct: 579 AIGKAVVNLINLAPDEKIMATITTKDFN---EDKSIAFFTKNGIIKRTNLSEFKNIRNVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  DE+++ +  +     IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 636 VRAINLDENDELVTAKIISPAIQQILVVTYEGMCVRFSVDNVREI-GRVARGVTAIKFKI 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V +                                               
Sbjct: 695 PKDYVIGATVVSN----------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++  ++ G LV V  V++N
Sbjct: 708 -----ENEEILSVSEKGIGKRTEINEYRITNRGGKGVIAMKLT--SKTGKLVGVVNVDEN 760

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  
Sbjct: 761 MDLMVLTSSGKMIRVDMQTIRKAGRATSGVIIVNVD-DDKVVSIARCP 807


>gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
 gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6]
          Length = 812

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/893 (39%), Positives = 524/893 (58%), Gaps = 85/893 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +V+I  EM+ SYL Y+++VI+GRAIPD+RDGLKPVHRRILF   ++   +N+   KCAR
Sbjct: 3   QNVNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+Y+AL R+AQD+S+R  L +GQGNFGS+DGD  AA RYTE R+ 
Sbjct: 63  IVGDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMS 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A   L+D+ K+TVDFRPNYD +  EPVVL  + PN+L+NG  GIAVGMATNIP HNL 
Sbjct: 123 RLASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLS 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ D  + +ID P+  ++ LM++++GPDFPTG  +    G+ +AY TGRG++ +RG   I
Sbjct: 183 ELSDALLMLIDAPESSVEDLMDVVQGPDFPTGGYVYAGQGLYDAYTTGRGTVKVRGKVEI 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E      + +++ EIP+ +NK++++EKIA L+ +++I  ++DLRDESDR+G RVVIELKR
Sbjct: 243 EDRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKR 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   ++++N LY+YT L++ F +NM+A+   +P    L   L  F+  R EVVVRRTK+ 
Sbjct: 303 GTMPEIVINSLYKYTPLETSFGINMLAVVDNRPVLLNLKTALAYFLDHRREVVVRRTKFE 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA  RAH+L GL  A+ ++DEVV +IR S  P  A+  LMQR                
Sbjct: 363 LRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQR---------------- 406

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSEVQ +AIL++RL RLTGL R  I  EL  L  +I     IL   S 
Sbjct: 407 ----------FELSEVQAQAILDMRLQRLTGLERGKIEEELRDLLSKIAWYQSILGDASV 456

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           L G+I+ E+  +K    TPRRT ++     +++ ED +  +D+V+T+S  GY+KR  L +
Sbjct: 457 LWGVIRDEVEYIKQTYSTPRRTEVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGI 516

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y+ QRRGGKG +GV   ++DFV +    + H  +L F++ G +++ KV ++P GS  A+G
Sbjct: 517 YQQQRRGGKGVAGVHTGEDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKG 576

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             + N++ + + E + TI+   E      +   +FAT+ G V+R+  + + +  + G IA
Sbjct: 577 VHIANLVPMEKDEWVNTILTVREFA---EDKSFLFATRRGMVKRSSAALYARSRKGGLIA 633

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   DE++ V   T ++ ++L T  G  +RF    +R   GR + GV+GI+L  GD V
Sbjct: 634 VGLREDDELIMVREITDDDFVVLATADGIAIRFSCRDVRNM-GRGATGVKGIALRHGDTV 692

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  ++                                                    K 
Sbjct: 693 VACLVL----------------------------------------------------KE 700

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               I+T+S  GFGKRT+   +R+ +R GKGI    V+   + G ++    V D++ ++L
Sbjct: 701 DSPAIMTISALGFGKRTNVDLYRVQSRGGKGIINFKVTP--KTGPVIGAKSVLDDEALVL 758

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++    +IR+ V+EIR   RAT GV +       RVV  + +      +  E+
Sbjct: 759 LTSTNKIIRMGVDEIRSVGRATIGVRLVKLDDGARVVGFDTVNSDADAEGEEA 811


>gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
 gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975]
          Length = 862

 Score =  835 bits (2156), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/915 (38%), Positives = 528/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    + +    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  YDSGYRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNP+   +      ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+   +R+ IV+TE+PYQVN   M+  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEEVG-NRQTIVITELPYQVNPDNMISNIAESVVNGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 AKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VA + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  E AR 
Sbjct: 356 QMLSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LMQ                           + + E+Q  AIL +RL RL  L R  I +
Sbjct: 416 GLMQ--------------------------LLGVDEIQADAILAMRLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +  DIL+   R   I+  EL  + ++    RRT+IV    D+ DED I R
Sbjct: 450 ELAEIEEIIADLKDILAREERQREIVHDELEEIVEKYGDERRTQIVAASGDVSDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITATGYAKRTKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     E   +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++  +   + +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++SM++V                                
Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVSDG----------------------------- 716

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                   QF+L  +  G+GKRT+  ++    R G G+     +
Sbjct: 717 ------------------------QFLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+A   V+++D+I  ++  G ++R  VN+IR +SRAT GV + + A D  +++
Sbjct: 753 P--KRGKLIAAISVDEDDEIFAITSAGGVVRTEVNQIRPSSRATMGVRLVNLADDVELLA 810

Query: 894 VERIRESEIVDEAES 908
           ++R  E +  ++A++
Sbjct: 811 IDRNVEDDGEEDAQA 825


>gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
 gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312]
          Length = 863

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/922 (37%), Positives = 535/922 (58%), Gaps = 71/922 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ I S +    E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDIIDSGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I+NP I+   L E+I+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  + TGRGSI +RGV++IE+       +++ +++TE+P+Q NKA ++E+IA+LV E++
Sbjct: 241 IRETFKTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +
Sbjct: 361 SLRRMLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTIS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L                               LS  Q  AIL+++L RLT L  D 
Sbjct: 421 AREKLQT--------------------------DHELSSTQAEAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ E + L  +I +   IL+S+ R+  II +EL  + +   +PR+T I++    ++D D 
Sbjct: 455 IKAEHDELTKKINQYQQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  +  VV ++  GY+KR+P++ + +  RG +G++G   + +D V      + H ++L F
Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +   N+ Y++  T
Sbjct: 575 SDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFD---NDCYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ ++ G  + F   I
Sbjct: 632 KSGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSKEGDSVLIGSRTGIAIHFRLDI 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L KGD ++SM ++     D   +I  +               
Sbjct: 692 NELRPL-GRTARGVKSMNLKKGDNLVSMDVLTSDLVDKLAKIDDLNKE------------ 738

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                           EE  +       ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 739 ---------------IEENIEVNSSDGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  + + ++++ V++KG ++R   ++I   SRA  GV +    + + 
Sbjct: 784 KF--RIQDDVLVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDEGDH 841

Query: 891 VVSVERIRES--EIVDEAESTE 910
           +  V  +     E +D+    E
Sbjct: 842 LSEVVLVPREQIEEIDQTSPEE 863


>gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
 gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus DSM 20075]
          Length = 827

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/896 (39%), Positives = 535/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F    +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNEKDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SE G+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 709 -----------ADDQVLVISENGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+  +   
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601]
 gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 865

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/919 (37%), Positives = 533/919 (57%), Gaps = 69/919 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++ + S +    E+   I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSDILDSDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+   + Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNF
Sbjct: 61  YAMYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G  ++I NP ++   L EII+GPDFPTG  ILGR G
Sbjct: 181 NGSSGIAVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQILGRDG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  + TGRGSI +RGV++IE+       +++ +++TE+P+Q NKAA++E+IA+LV EK+
Sbjct: 241 IKETFKTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+VIELKR A   V+LN L++ T LQ+ FS N++AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGEPTTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L  F+ FR E + RRT +LL KA +R H++ GL +A+  +DE++ +IR + +  +
Sbjct: 361 SLRKMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVS 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  L                               LS  Q  AIL+++L RLT L  D 
Sbjct: 421 ARENL--------------------------QADHELSATQAEAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I+ E + L  +I     IL+S+ R+  II +EL  + +   +PR+T I++    ++D D 
Sbjct: 455 IKGEHDELTRKINLYKQILNSKERIFEIILEELNKIDERFSSPRKTEILDLGGGLDDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  +  VV ++  GY+KR+P++ + +  RG +G++G   +++D V      + H ++L F
Sbjct: 515 IANDRSVVLLTEAGYLKRMPVNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P+ S  A+G   + +L + + E+IT+++     +   N+ Y++  T
Sbjct: 575 SDRGVSYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFD---NDCYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PI 710
           K G ++R  LS F +I  +G IA+ L+  D +  V    + + +L+ ++ G  + F   I
Sbjct: 632 KAGFIKRTSLSAFSKIRSNGLIAINLEDGDALTWVRLSREGDSVLIGSRTGMAIHFRLDI 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + GV+ ++L KGD ++SM ++     D   +   +               
Sbjct: 692 NELRPL-GRTARGVKSMNLRKGDNLVSMDVLTSDLVDQLAKSEDITKE------------ 738

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                          S+E  +    +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 739 ---------------SDENLEVNSSEGPWVLIASAFGLGKRVPVTQFRLQKRAGMGLRAI 783

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  + + ++++ V++KG ++R   ++I   SRA  GV +      + 
Sbjct: 784 KF--RIKDDVLVCLKVLGEGEELLFVTEKGVIVRTNADKISQQSRAATGVKLQRLDMGDH 841

Query: 891 VVSVERIRESEIVDEAEST 909
           +  V  +   +  +  +S 
Sbjct: 842 LSEVVLVPHEQTEEADQSN 860



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 96/254 (37%), Gaps = 16/254 (6%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    ++  + +     D    ++    +  ++L T+ G   R P++       R S
Sbjct: 491 DERFSSPRKTEILDLGGGLDD----IDLIANDRSVVLLTEAGYLKRMPVNEFES-TSRGS 545

Query: 722 VGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G  G    + D+V   IS           D  + Y                  +     
Sbjct: 546 RGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPMSSRTAKGTPSVQLLP 605

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              E  I+     +    + ++L +++ GF KRTS   F        G+ A ++    + 
Sbjct: 606 IPREEKITSLVAVDSFDNDCYLLMLTKAGFIKRTSLSAFSKIR--SNGLIAINL---EDG 660

Query: 839 GALVAVFPVNDNDQIILVSDKGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            AL  V    + D +++ S  G  I  R+ +NE+R   R  +GV   +  K + +VS++ 
Sbjct: 661 DALTWVRLSREGDSVLIGSRTGMAIHFRLDINELRPLGRTARGVKSMNLRKGDNLVSMDV 720

Query: 897 IRESEIVDEAESTE 910
           +  S++VD+   +E
Sbjct: 721 LT-SDLVDQLAKSE 733


>gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 809

 Score =  834 bits (2155), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/890 (40%), Positives = 546/890 (61%), Gaps = 86/890 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S +   E GI  V I  +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  + +
Sbjct: 1   MSENNIIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             N  Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD++ R  L++GQGNFG++DGD  
Sbjct: 61  ASNGPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+TVDF PN+D + +EP +L AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HN+ E +DG +A IDN +I +  L +II+GPDFPTGA I+G  GIK AY TGR
Sbjct: 181 MATNMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGTEGIKEAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I+    +RE+IV+TE+PYQVNK+A++ KIAEL + K I  I+++ D S+R
Sbjct: 241 GKITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G  +++ELKR A+A+V+LN+LY+ T +Q+ F +  +AL   +PE   L  I++ +V  +
Sbjct: 301 KGINIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGRPEILNLKQIIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRTK+ L+KA  RAH++ GL IA+ N+D +++I+R S + + A+ +  +      
Sbjct: 361 VEVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEE----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E Q++AIL++R+ RLTGL RD +  E   L  +IK
Sbjct: 416 ---------------------FKLTEEQSQAILDMRIRRLTGLERDRLEAEYEKLQADIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK+ELL +K++    RRT I     D+E ED I +ED+V+T++  
Sbjct: 455 WFKEILENNDVLMNLIKEELLEIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQF 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+    Y+ Q+RGG+G S   MRD+DFV +LF+ STH  +LFF+SLG V+K K + 
Sbjct: 515 GYIKRMSEGTYKPQKRGGRGVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  +RG A+IN+L L++ ER+T+I+P  E +    +L  +  T+ G ++R    D+
Sbjct: 575 IPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYD---PDLNFLMVTEKGLIKRTPFKDY 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I +SG IA+KL+  D+++ V     + D++L TK G  +RF    +R  +GRNS+GV+
Sbjct: 632 KNIRKSGIIAIKLNEGDKLIDVHLTKDDEDVILVTKKGLSIRFNEEQVR-KSGRNSMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L K D V+S  +V+                                           
Sbjct: 691 SMDLDKDDIVVSSDLVVD------------------------------------------ 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      ++++L +SE G+GK T    +R  NR GKG+    ++  N+ G + +  
Sbjct: 709 -----------DKYLLVISENGYGKLTEIDKYRPQNRGGKGLLTYKIT--NKTGDVASAA 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            V   D ++++++ G +IR+   +I +  R T GV + +   D +VV+V 
Sbjct: 756 VVEKEDDVMIIANSGIIIRILTEDISVQGRNTSGVKLMNLT-DAKVVAVA 804



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 77/215 (35%), Gaps = 9/215 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD--- 745
              +E+ ++  T+ G   R      +    R   GV   ++   D V  + +    D   
Sbjct: 501 IIKKEDVVITLTQFGYIKRMSEGTYKPQK-RGGRGVSSGNMRDKDFVKELFVTSTHDMIL 559

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   +                       D   +  ++     +    +   L V+E
Sbjct: 560 FFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDEDERVTSIIPVKEYDPDLNFLMVTE 619

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG  KRT   D+   N    GI A  +   NE   L+ V    D++ +ILV+ KG  IR 
Sbjct: 620 KGLIKRTPFKDY--KNIRKSGIIAIKL---NEGDKLIDVHLTKDDEDVILVTKKGLSIRF 674

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              ++R + R + GV      KD+ VVS + + + 
Sbjct: 675 NEEQVRKSGRNSMGVKSMDLDKDDIVVSSDLVVDD 709



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           + +E       + +    ++   +++  KE  ++T+++ G+ KR S   ++   R G+G+
Sbjct: 476 EIKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGV 535

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-- 885
            + ++   + +  L   F  + +D I+  +  G + ++   EI   SR ++G  I +   
Sbjct: 536 SSGNMRDKDFVKEL---FVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLD 592

Query: 886 -AKDERVVSVERIRESEIV 903
             +DERV S+  ++E +  
Sbjct: 593 LDEDERVTSIIPVKEYDPD 611



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 74/191 (38%), Gaps = 19/191 (9%)

Query: 727 ISLAKGD---QVIS---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           I    GD    VIS     I +      ++ +  +      +R+  G  +         S
Sbjct: 477 IKEKYGDLRRTVISHARTDIEIEDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGRGVS 536

Query: 781 VEGNISEERCQEL--KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 ++  +EL        IL  +  G   +  +Y+    +R+ +G    ++  ++E 
Sbjct: 537 SGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTSRGTAIINLLDLDED 596

Query: 839 GALVAVFPVNDND---QIILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVV 892
             + ++ PV + D     ++V++KG + R P  +   IR       G++     + ++++
Sbjct: 597 ERVTSIIPVKEYDPDLNFLMVTEKGLIKRTPFKDYKNIRK-----SGIIAIKLNEGDKLI 651

Query: 893 SVERIRESEIV 903
            V   ++ E V
Sbjct: 652 DVHLTKDDEDV 662


>gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
 gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri
           JV22]
          Length = 860

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE     +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ +    +  +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    +   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D                                            
Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
 gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16]
          Length = 877

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/848 (44%), Positives = 536/848 (63%), Gaps = 17/848 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALNNGQPQLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELETVRDAFGDVRRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK +INIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIINILPLEEGERITAILPVDEFS---PEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+ +  +               +      +      T       V    
Sbjct: 722 GMKLADEDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +   ++ +++ G   RT   +     R+ +G+     ++      +V + 
Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDE---NVVGLQ 836

Query: 846 PVNDNDQI 853
            +++ +++
Sbjct: 837 RIDEVEEV 844



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/427 (15%), Positives = 152/427 (35%), Gaps = 29/427 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R +                A
Sbjct: 469 EHEKILDEYKALLEEIAELMHILASTERLMEVIREELETVRDAFG-----DVRRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   I+  L   E E        D    E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITNGDSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFNEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  +S +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVSEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +                  + S + E  T
Sbjct: 812 -SQVGRNTQGVTLIRTAEDENVVGLQRIDEVEEVDLPEGEDAADTENTAEVTSENPETPT 870

Query: 774 SLKNDSS 780
                 +
Sbjct: 871 GDDEPQA 877


>gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
 gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1]
          Length = 879

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/937 (37%), Positives = 525/937 (56%), Gaps = 113/937 (12%)

Query: 1   MTEHIISSDEEEEK-----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           M +       E               +  V +  EMQ SYL YA++VI+ RA+PD+RDGL
Sbjct: 1   MADENTPVTPEPATPEEVTVPGVGMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ 
Sbjct: 61  KPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL A
Sbjct: 121 LVDSNGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPA 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDF 225
           R+PN+LVNG  GIAVGMATNIP HNL EV  G    +++P+   + L++     I+GPDF
Sbjct: 181 RFPNLLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASHEELLDALIERIKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PTGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+P+Q N   + +KIA
Sbjct: 241 PTGALVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIA 299

Query: 286 ELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LV++ ++  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F  NM+AL
Sbjct: 300 DLVKDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLAL 359

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P   ++   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +I
Sbjct: 360 VDGVPRTLSIDAFIRHWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALI 419

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S   E AR  LM                          G + + E+Q  AILE++L R
Sbjct: 420 RRSNTVEIAREGLM--------------------------GLLEIDELQANAILEMQLRR 453

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L    I  E + L  +I E  +IL+S ++   I+ +EL ++ D+    RR+++V   
Sbjct: 454 LAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFD 513

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  +R++D V   F+ +
Sbjct: 514 GDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVST 573

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E+I  I+   + E+   
Sbjct: 574 THHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAV-- 631

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLT 699
             Y++ ATK G V++  L D+      G IA+ L        DE++  E  + E+D+LL 
Sbjct: 632 -PYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPEGGDDELIGAELVSAEDDLLLI 690

Query: 700 TKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +K  Q +RF  +   +R   GR + GV+G+S  +GD+++SM +V                
Sbjct: 691 SKKAQSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------ 737

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                    F+ T ++ G+ KRT   ++
Sbjct: 738 -----------------------------------------FVFTATDGGYAKRTPVDEY 756

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R T
Sbjct: 757 RVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRDT 814

Query: 878 KGVVIFSTAKDERVVSVERIR----ESEIVDEAESTE 910
            GV + +  K + VV + R      E+E VD A+  +
Sbjct: 815 MGVQLINLGKRDAVVGIARNAEAGREAEEVDGADDVD 851


>gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946]
 gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946]
          Length = 805

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/889 (40%), Positives = 523/889 (58%), Gaps = 86/889 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +  + IT+E++ S++ YA++ I+ RA+PD+RDGLKPV RRIL+   Q G+   +K+ K
Sbjct: 2   SQVLPIEITEEVKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I GEVM KYHPHG+AAIYD LAR+AQ W+ R  LI+GQGNFGS+DGDPPAA+RYTE 
Sbjct: 62  SAGIVGEVMKKYHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL    + +L D+ K+TV+F PNYDG+ ++P VL A  PN+LVNG  GIAVGMAT+IP H
Sbjct: 122 RLSSIGYEMLRDIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  VA+ID P + LD +M+++ GPDFPTGA +  R GI+ AYA+GRGS+ +R  
Sbjct: 182 NLSEVIDALVALIDQPGLSLDEIMKLLPGPDFPTGARLS-RKGIREAYASGRGSLKVRAK 240

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E     R  +V TEIPYQVNKA ++ +IA L + K I +IA LRDESDRQG R+ +E
Sbjct: 241 VRNED-KNGRAMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA+  V+LN+LY+++ LQ+ F+VN++A+   +P+  +L  +L+ ++  R EVV RRT
Sbjct: 300 LKRGANPQVVLNKLYKHSRLQASFTVNLLAIVNGEPKVLSLPELLRHYLNHRREVVYRRT 359

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L++A+ RAHVL GL IA+ ++DEV+ +IR S +   AR  L+ R             
Sbjct: 360 QYELSEAKKRAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIAR------------- 406

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LS++Q +AIL++RL RL GL R+ ++ E   L   I     IL  
Sbjct: 407 -------------FALSDIQAQAILDMRLQRLVGLEREKLQEEYRELQETIAYLSAILQD 453

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL G++K+ELL +K++    RRT++ E       ED I  E MV+T++  G++KR PL
Sbjct: 454 EKRLWGVVKEELLEIKNKYGDARRTQLTEFEEGFNPEDLIEDEPMVITLTSQGFLKRTPL 513

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG G      ++ED    +F+ S H  +LFF++ G VY+EKV+ LP  S QA
Sbjct: 514 EAYRAQGRGGVGAQAGKTKEEDEAVQVFVASMHDDLLFFTNRGRVYREKVFELPEASRQA 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG  ++++L L +GE +  ++            Y VFAT+ G ++R ++ ++  ++ +G 
Sbjct: 574 RGTHVVSMLPLIEGEEVAALLGVRSLS---EAGYFVFATRQGLIKRTEIQEYQNLSSAGL 630

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           IA+ L   D ++ V        I+L T  GQ +RF +  +R   GR S GV GI    +G
Sbjct: 631 IAINLLENDALIGVGIAQDGEQIMLATAYGQAIRFDLEDVRA-TGRASQGVTGIRFKDEG 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQV+S+ I+                                                   
Sbjct: 690 DQVVSLVILPKGY----------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  +L V  KG+GKRTS  ++ +  R G+G+     ++  ++G L A+  V  ++ 
Sbjct: 703 ----EGEVLAVGTKGYGKRTSVAEYPVQGRGGQGVITFKTTE--KVGKLAALMRVAGDED 756

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++++S +G  IR  V  I +  R T GV I + A+D+ VVS   I+  +
Sbjct: 757 LLVLSRRGIAIRTKVGSISLYGRPTSGVKIMNLAEDDEVVSAFVIKPQD 805


>gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379]
 gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
 gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998]
          Length = 880

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/938 (38%), Positives = 525/938 (55%), Gaps = 114/938 (12%)

Query: 1   MTEHIISSDEEEEK------------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48
           M +       E                +  V +  EMQ SYL YA++VI+ RA+PD+RDG
Sbjct: 1   MADENTPETPESVTLEEEVTVPGVGMRVEPVQLETEMQRSYLDYAMSVIVSRALPDVRDG 60

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+
Sbjct: 61  LKPVHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRM 120

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            L++  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL 
Sbjct: 121 PLVDSNGNFGSPGNDPAAAMRYTECKMMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLP 180

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPD 224
           AR+PN+LVNG  GIAVGMATNIP HNL EV  G    +++P+   +     L+E I+GPD
Sbjct: 181 ARFPNLLVNGSAGIAVGMATNIPPHNLREVAAGAQWYLEHPEASHEELQDALIERIKGPD 240

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPTGA+++GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQ N   + +KI
Sbjct: 241 FPTGALVVGRKGIEEAYRTGRGSITMRAVVAVEEIQ-GRQCLVVTELPYQTNPDNLAQKI 299

Query: 285 AELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           A+LV++ ++  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ+ F  NM+A
Sbjct: 300 ADLVKDGKVGGIADVRDETSSRTGQRLVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLA 359

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           L    P   ++   ++ +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +
Sbjct: 360 LVDGVPRTLSIDAFIRHWVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIAL 419

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR S   E AR  LM                          G + + E+Q  AILE++L 
Sbjct: 420 IRRSNTVEIAREGLM--------------------------GLLEIDELQANAILEMQLR 453

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           RL  L    I  E + L  +I E  +IL+S ++  GI+ +EL ++ ++    RR+++V  
Sbjct: 454 RLAALEHQKITAEHDELQAKINEYNEILASPAKQRGIVSEELAAIVEKFGDDRRSKLVPF 513

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
             DM  ED I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  +R++D V   F+ 
Sbjct: 514 EGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVS 573

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +TH  +LFF++ G VY+ K + LP     ARG+ + N+L+    E+I  I+   + E+  
Sbjct: 574 TTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDEKIAQILAIRDYEAV- 632

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILL 698
              Y++ ATK G V++  L D+      G IA+ L        DE++  E  + E+D+LL
Sbjct: 633 --PYLILATKGGLVKKTALKDYDSPRSGGVIAINLREMPDGGDDELIGAELVSAEDDLLL 690

Query: 699 TTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
            +K  Q +RF  +   +R   GR + GV+G+S  +GD+++SM +V               
Sbjct: 691 ISKKAQSIRFTATDDALRPM-GRATSGVKGMSFREGDELLSMNVVRPGT----------- 738

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                     F+ T ++ G+ KRT   +
Sbjct: 739 ------------------------------------------FVFTATDGGYAKRTPVDE 756

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +R+  R G GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNE+R   R 
Sbjct: 757 YRVQGRGGLGIKAAKIVE--DRGSLVGALVVEETDEILAITLGGGVIRTRVNEVRETGRD 814

Query: 877 TKGVVIFSTAKDERVVSVERIR----ESEIVDEAESTE 910
           T GV + +  K + VV + R      E+E VD  +  E
Sbjct: 815 TMGVQLINLGKRDAVVGIARNAEAGREAEEVDGTDDAE 852


>gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
 gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2]
 gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27]
          Length = 811

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDTVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+    VS+  + G +V+V  V++++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
 gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626]
          Length = 929

 Score =  834 bits (2154), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/882 (41%), Positives = 535/882 (60%), Gaps = 86/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    + DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK + K A
Sbjct: 81  LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
              GEVMGKYHPHG++AIYD++ RM+QD+S+RL LI+G GNFGS+DGDPPAA RYTE RL
Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            ++A  +L DL K+TVD +PNYD +  EP VL AR+PN+LVNG  GIAVGMATNIP HNL
Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV +    +IDNPD+  + LME++ GPDFPTG +I+G  GIK+AY TGRGSI +R   H
Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGTQGIKDAYETGRGSITVRAKVH 320

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E T   R+++VVTEIPYQVNK  + EKIA+ V EK+I  I+D+RDES+R+G R+VI+LK
Sbjct: 321 VESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDLK 380

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG    V+LN LY+ T LQS F +  +AL    P   +L  IL+ ++  + +VV RRT++
Sbjct: 381 RGEVPQVVLNNLYKRTQLQSNFGIIDLALVDGVPRTLSLREILRCYIDHQIDVVRRRTEF 440

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+KA  R H+L GL  AV N+DE+V IIR S +   A+R + +R               
Sbjct: 441 DLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHER--------------- 485

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L ++Q  AIL++RL RLTGL R D+ +E++ L  +I    D+L+  +
Sbjct: 486 -----------FDLDDIQGEAILQMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHEN 534

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++L +I  EL  + +     RRT+I +  +   + ED I  EDMVVTV+H GYVKRVP+ 
Sbjct: 535 KILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVE 594

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +YR+Q+RGGKG  GV +++ DFV +LF+ STH  VLFF++ G VY+ KV  LP+G+   +
Sbjct: 595 IYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTTK 654

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+LSL++GE+I  ++   +        Y++FATK G V++  +S++ +  + G I
Sbjct: 655 GNAIVNVLSLSEGEKIAAVITTRDFP---AENYLMFATKQGMVKKTAMSEYDRTRKDGII 711

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   DE+++V      + ++L +  G+ + F  S  R   GR + GVRGI L     
Sbjct: 712 AINLKQGDELVNVRRVHPGDKVILCSSDGKAILFDESQARAM-GRGTSGVRGIMLKGEAT 770

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ M I                                                      
Sbjct: 771 MLGMEITNGNGD------------------------------------------------ 782

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                +  ++EKG+GKRT+  ++    R G+G+    ++   + G LVA   V    +I+
Sbjct: 783 -----LFVITEKGYGKRTAVSEYPEHKRGGQGVFTITMTA--KKGKLVACRVVGPQHEIM 835

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++S++G +IRV   +I    R+T+GV + +   D+ V ++ R
Sbjct: 836 IMSEEGVVIRVKAVDISKLGRSTQGVKVMNIGADDHVSAIAR 877



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 105/264 (39%), Gaps = 18/264 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E+ ++  +  G VK+  +S Y   R+ G     + ++  D + ++  V     V+  
Sbjct: 679 FPAENYLMFATKQGMVKKTAMSEYDRTRKDG--IIAINLKQGDELVNVRRVHPGDKVILC 736

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G   K  ++         RG + +  + L     +  +      E +  N  +   T
Sbjct: 737 SSDG---KAILFDESQARAMGRGTSGVRGIMLKGEATMLGM------EITNGNGDLFVIT 787

Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + G  +R  +S++ +  R       I M      ++++      +++I++ ++ G  +R 
Sbjct: 788 EKGYGKRTAVSEYPEHKRGGQGVFTITMTAKKG-KLVACRVVGPQHEIMIMSEEGVVIRV 846

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISG 767
               I    GR++ GV+ +++   D V ++A +++H                A       
Sbjct: 847 KAVDI-SKLGRSTQGVKVMNIGADDHVSAIARMIVHKKKAPKHAENQGMLDLAAAGARDA 905

Query: 768 DTEEITSLKNDSSVEGNISEERCQ 791
           D  E+  L ++  ++ ++ +E  +
Sbjct: 906 DETEVVDLGDEEELDESLIDEDDE 929



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 69/279 (24%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIR-----VFAGRNSVGVRGISLAKGDQVI 736
           DEI+ +   +Q++      K     RF +  I+         R   G     LA+ D V 
Sbjct: 463 DEIVHIIRSSQDD---AEAKRRMHERFDLDDIQGEAILQMRLRRLTG-----LARQDLVD 514

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKL 795
            ++ +    A Y++ + +   + A       D     S K  + +     +    E L  
Sbjct: 515 EISQLREDIAYYEDLLAHENKILAVIADELRDISNRFSNKRRTQISDQDVQNLDVEDLIA 574

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN------------------- 836
           +E  ++TV+  G+ KR     +R   R GKG++   + + +                   
Sbjct: 575 EEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGVSLKENDFVEELFVASTHDYVLFFTN 634

Query: 837 -------------------EIGALVAVFPVNDNDQI---------------ILVSDKGTL 862
                              +  A+V V  +++ ++I               +  + +G +
Sbjct: 635 FGKVYRVKVHELPVGNRTTKGNAIVNVLSLSEGEKIAAVITTRDFPAENYLMFATKQGMV 694

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +  ++E     +   G++  +  + + +V+V R+   +
Sbjct: 695 KKTAMSEYDRTRKD--GIIAINLKQGDELVNVRRVHPGD 731


>gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273]
 gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273]
          Length = 815

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/884 (41%), Positives = 521/884 (58%), Gaps = 85/884 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G++  K + K AR+ GEV+GK
Sbjct: 1   MRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YD+L R+ QD+SLR  LI+GQGNFGS+DGD PAA RYTE R+++ A  +L 
Sbjct: 61  FHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF  N+D S +EP VL +  PN+LVNG  GIAVGMATNIP  NL EVVDG +A
Sbjct: 121 DLDKETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIA 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263
           +I NP++++  LM+ +  PDFPT  +I G  G++ AY TGRG +VIR  + IE      R
Sbjct: 181 LIGNPELEVSDLMKFVIAPDFPTAGIIYGYEGVRQAYLTGRGKVVIRARALIEVTQKNGR 240

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E IVVTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR G R+VIELKR A A V+
Sbjct: 241 ESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVV 300

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY++T +Q  F V M+AL    P    L  +++ ++  R E+V+RRT++ L  A  R
Sbjct: 301 LNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERR 360

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL I + NLDEV+  IR SP+  TA+  LM+R                       
Sbjct: 361 AHILEGLKICLDNLDEVITTIRESPDANTAQDRLMER----------------------- 397

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                LSE+Q +AILE+RL RLTG+ R  I  E       I E   IL S  R + II+ 
Sbjct: 398 ---FALSEIQAKAILEMRLQRLTGMERQKIDAEYKETLATIDELRLILQSPERQMEIIRT 454

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           ELL VK+     RRT IV    D   ED I +ED+V+TV+H G++KR P+S YR Q RGG
Sbjct: 455 ELLKVKEVYGDERRTEIVPQEGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGG 514

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG +G   + +DF+  +F+ STH  +LFF++ G  Y  KV+ +P     ARG+AL NI+ 
Sbjct: 515 KGVTGAQAKHDDFIEHMFVASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIME 574

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L+  E+I   +     +      Y++ AT  G V++  L +F +  R+G  A+ +D  D 
Sbjct: 575 LHPDEKIKAYINIRNFD---EPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDA 631

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L       ++ ++L    G  VRFP   +R   GR ++GV+GI+L +G++ I+M     
Sbjct: 632 LLDARLTDGDHQVILAKSSGLVVRFPEVQVRPM-GRTAMGVKGITLDRGEKCIAMVTTKR 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
            D                                                      +L V
Sbjct: 691 TDTA----------------------------------------------------LLAV 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           ++ GFGKR+   D+R++ R  +G+      +  +IG+LV +  VND+D +IL++  G + 
Sbjct: 699 TDNGFGKRSRVEDYRLTKRGARGVITLKAHE--KIGSLVGLLDVNDDDDLILITTHGIVN 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           R  V++IRI  R T GV +      + + ++ R+ +S+   +++
Sbjct: 757 RQHVSDIRITGRNTSGVKLIRLMAGDTISALARVPKSDEETDSD 800


>gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4]
          Length = 844

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/919 (38%), Positives = 538/919 (58%), Gaps = 102/919 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V + + M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   DDKIFDNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+W+ R  L++G GNFGS DGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLL------------DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           RYTE RL K +  +              D+  D VDF PN+D + +EP VL ARYPN+LV
Sbjct: 122 RYTEARLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLV 181

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVI 231
           NG  GIAVGMATNIP HNL E++     +IDN      + ++D L+EI++GPDFPTG VI
Sbjct: 182 NGTTGIAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVI 241

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           LG+ GI+ AY TGR  I +R VS IE     + +IVVTE+PY VNKA ++E IA+LV++K
Sbjct: 242 LGKAGIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDK 301

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I  I DLRDES R+G RV IEL+R  + ++ILNQLY++T LQ  F V M+AL   +P+ 
Sbjct: 302 KIDGITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLALVNNQPKI 361

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L  ++  +++VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S +  
Sbjct: 362 LNLKQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVN 421

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +A+  LM+R                            LS+ Q +AI+++RL  LTGL RD
Sbjct: 422 SAKATLMER--------------------------FGLSDAQAQAIVDMRLRALTGLERD 455

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I+ E + L I I +   IL     LLG+IK E+  + D+    RRT I     D+  ED
Sbjct: 456 KIQKEYDDLQILIGKLKAILGDEKILLGVIKTEITEIADKYGDDRRTSIGFDEFDISMED 515

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I   + VVT + LGY+KR+    ++AQ RGGKG  G+   D+D+VT++ ++S+H  +LF
Sbjct: 516 MIPVTNTVVTFTKLGYIKRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLF 575

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + +P  S  +RG A++NIL L   E+IT ++P  +      + Y+  A
Sbjct: 576 FTNKGRVYRIKAYEIPESSRTSRGIAIVNILQLQPDEKITAMIPIEDY---HEDKYLFMA 632

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++ K++++  I ++G  A+ L   D ++ V+    + D+++ TK GQ +RF  +
Sbjct: 633 TADGFVKKTKITEYDNIRKNGLTAITLRDDDTLIEVKLTDGDEDVIMVTKYGQAIRFSET 692

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR ++GV G++L+  D++I M ++   ++                         
Sbjct: 693 EVRS-TGRATMGVIGMNLSADDEIIGMQLISQGES------------------------- 726

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       ++TVSE G GK T   +F   +R GKG++   
Sbjct: 727 ----------------------------LMTVSENGLGKCTLMTEFNTIHRGGKGVKCYK 758

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++  + G L+    V  +D+++L++  GT+IR+ V    + SR T GV +    ++ ++
Sbjct: 759 ITE--KTGNLIGAKAVEKDDEVMLINTAGTIIRIEVAGTTLLSRITSGVKLIDLKENTKL 816

Query: 892 VSVERIRESEIVDEAESTE 910
           +S+ ++R+S+ +   E  E
Sbjct: 817 ISIAKVRKSDTILAEEVEE 835


>gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1]
          Length = 827

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/897 (40%), Positives = 535/897 (59%), Gaps = 85/897 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  +SI +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  K +
Sbjct: 2   QRERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GK+HPHG+ A+YD+L R+ Q++S+R  LI+GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++  A  +L DL K TVDF  N+D S +EP VL +  PN+L NG  GIAVGMATNIP
Sbjct: 122 EVRMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL EVVDG +A+I NP++++  LM+ +  PDFPTG +I G  G+++AY TGRG +VIR
Sbjct: 182 PQNLREVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIYGYEGVRSAYMTGRGKVVIR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             + +E      RE IVVTE+PYQVNK  ++EKI ELV +K+I  IAD+RDESDR G R+
Sbjct: 242 ARAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A A V+LN LY++T +Q  F V M+AL    P    L  ++  ++  R E+V+
Sbjct: 302 VIELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDGVPRILNLKEMMVYYIKHRNEIVL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L  A  RAH+L GL I + NLDEV+  IR SP+  TA+  L++R          
Sbjct: 362 RRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTG+ R  I  E   +   I+E   I
Sbjct: 412 ----------------FGLSELQSKAILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  + + II++ELL V++     RRT IV    D   ED I +ED+V+T++H G++KR
Sbjct: 456 LGSPEKQMQIIREELLKVREVYGDERRTEIVPQEGDFSIEDMIAQEDVVITITHEGFIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGGKG +G   + +DFV  +FI STH  +LFF++ G  +  KV+ +P   
Sbjct: 516 FPVSGYRRQARGGKGVTGAQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+AL NI+ L QGE+I   +     +      ++V AT +G V++  L DF    +
Sbjct: 576 RAARGRALANIMELQQGEKIRAYINIRNFD---EPGFIVMATTNGIVKKTPLEDFSHPRK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +D  DE+L       ++ I+L    G  VRFP + IR   GR ++GV+GI+L 
Sbjct: 633 NGIAAITIDEHDELLDARLTDGDHQIILAKNSGFVVRFPEAEIRSM-GRTAMGVKGITLD 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G++ ISM      D                                             
Sbjct: 692 EGEKCISMVTTKRFDTA------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +L V++ GFGKR+   D+R++ R  +G+      +  ++GAL+ +  VND+
Sbjct: 709 ---------LLAVTDNGFGKRSRVEDYRLTRRGARGVITLKAHE--KVGALIGLLDVNDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +I+++ +G + R  V++IR+  R T GV +      + + ++ R+ +S+   +++
Sbjct: 758 DDLIIITAQGIVNRQHVSDIRLTGRNTSGVRLVRLMAGDIISALARVPKSDEEVDSD 814


>gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE     +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ +    +  +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    +   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D                                            
Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
 gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810]
 gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030]
          Length = 878

 Score =  834 bits (2153), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/843 (44%), Positives = 531/843 (62%), Gaps = 17/843 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L  GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFS---ADKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+ +  +               +      +      T       V    
Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +   ++ +++ G   RT   +     R+ +G+     ++     ++V + 
Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDE---SVVGLQ 836

Query: 846 PVN 848
            ++
Sbjct: 837 RID 839



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R       A     + +  +
Sbjct: 469 EHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVRDG----FADARRTEITAAS 524

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            DI D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 525 HDI-DMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATRMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   + E        D    +
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSAD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITTGSSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +   A     + +     
Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAETTEANAEQQAPEAPAED 870

Query: 774 SLKNDSSV 781
             +     
Sbjct: 871 DAEEGKEE 878


>gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329]
          Length = 878

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/843 (44%), Positives = 531/843 (62%), Gaps = 17/843 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L  GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFS---ADKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+ +  +               +      +      T       V    
Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +   ++ +++ G   RT   +     R+ +G+     ++     ++V + 
Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDE---SVVGLQ 836

Query: 846 PVN 848
            ++
Sbjct: 837 RID 839



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R       A     + +  +
Sbjct: 469 EHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVRDG----FADARRTEITAAS 524

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            DI D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 525 HDI-DMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATRMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   + E        D    +
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSAD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITTGSSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +   A     + +     
Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAETTEANAEQQAPEAPAAD 870

Query: 774 SLKNDSSV 781
             +     
Sbjct: 871 DAEEGKEE 878


>gi|223936716|ref|ZP_03628626.1| DNA gyrase, A subunit [bacterium Ellin514]
 gi|223894567|gb|EEF61018.1| DNA gyrase, A subunit [bacterium Ellin514]
          Length = 893

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/925 (39%), Positives = 552/925 (59%), Gaps = 87/925 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + +  +++ DE++NS+L Y+++VI+ RA+PD+RDGLKP  RRILF M  + +  N+++ 
Sbjct: 21  NEKVAKINVADEIKNSFLDYSMSVIISRALPDVRDGLKPSQRRILFAMHDLSLYPNRQHR 80

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I G+  G YHPHG A IY  L  MAQ W++R  LI+GQGNFGS++GDPPAA RYTE
Sbjct: 81  KCAKICGDTSGNYHPHGEAVIYPTLVHMAQPWAMRERLIDGQGNFGSIEGDPPAAMRYTE 140

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+      L+ D+ KDTVDF PNYD + +EP V  A +PN+LVNGG GIAVGMATN+  
Sbjct: 141 ARMTHLGAALMADMEKDTVDFVPNYDETSKEPTVFPAAFPNLLVNGGTGIAVGMATNMAP 200

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DG  A ID+P I +  LM+ I+GPDFPTG ++ G  GIK  +ATGRG I +RG
Sbjct: 201 HNLGEVIDGICAQIDDPTITVPQLMKYIKGPDFPTGCMVCGLEGIKKYFATGRGQIKMRG 260

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E+    REQIV++ +P+ VN A + E+IAELV EK I DI+ LR+ESD    R+VI
Sbjct: 261 KVDVEQLKNGREQIVISTVPFNVNPAQLEERIAELVNEKIIGDISALRNESDE-NTRIVI 319

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR AS  V++N LY +TSL+S F+VN +A++  +P+   L  ++ A++  R EV++RR
Sbjct: 320 ELKRDASPKVVINNLYNHTSLESSFAVNALAIDHGRPKTLGLKDLINAYIEHRREVIMRR 379

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA +RA  L G  IA++N+DE +RIIR S N E AR +L+   +N   ++ +  
Sbjct: 380 TRFELRKAEERAETLEGYLIALSNMDEFIRIIRSSANREEARIKLLAFDFNRQQVEQIGI 439

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           LI D +    ++G    SE Q  AIL+LRL +LTGL  D +R E  +L   IK+ LDIL+
Sbjct: 440 LIRDEAR--LTNGRYAFSEAQANAILDLRLYQLTGLEIDKVRAEYTALIERIKDLLDILA 497

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             SR+L IIK EL  +K++  TPR T +V    +M  ED I  E +++T++H G +KR  
Sbjct: 498 KESRVLEIIKAELREIKEKYATPRMTDLVPDEGEMALEDLITNEGVIITITHGGLIKRTN 557

Query: 553 LSVYRAQRRGGKGRSGVVMRD--------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +S YRAQRRGGKG  G+  R+        +DF+  LF   TH  ++FF++ G V+ E+V 
Sbjct: 558 VSSYRAQRRGGKGVIGMATREGSAADGDKDDFIEHLFSAGTHDYLMFFTNSGRVFVERVH 617

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPF-------PEDESSWNNLYVVFATKHGNV 657
            +P  +  ++G+++ N+L L   E+I  ++          ED++   +  + FAT+ G V
Sbjct: 618 EIPDMARASKGRSIANLLELKAEEKIAALIRIVSKNGPNKEDQTWTQSGELFFATQQGTV 677

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ------------ENDILLTTKLGQC 705
           ++  L+DF  + + G IA+ ++  D ++ V+                  D++L T+ G  
Sbjct: 678 KKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLITREGMS 737

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  S +R   GRN+ GVRGI+L K D V+++A+++                       
Sbjct: 738 IRFAESNVRSM-GRNATGVRGINLEKTDAVVALAVLVP---------------------- 774

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          +  +L   E G GKRT   ++R+ +R GK
Sbjct: 775 -------------------------------DATLLVAGENGIGKRTDFGEYRVQSRGGK 803

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI     +  ++ G +V    V DND+I+L+++ G ++R+ V +IR A R T+GV + + 
Sbjct: 804 GIITMKTN--DKTGGVVGALTVRDNDEIMLITEAGQMVRISVKDIREAGRNTQGVKLINL 861

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
              +++ ++  +  SE  +EAE+ +
Sbjct: 862 EAGDKLQAISPVI-SEEKEEAETGD 885



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 23/232 (9%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVM----------RDEDFVTDLFIVSTHTSVLFF 592
           +  G VK+  L+ +   R+GG     +            R      D  +      V+  
Sbjct: 672 TQQGTVKKTSLADFANVRKGGIIAISIEPGDTLIDVKLTRGSKVEADGTVSDPGEDVVLI 731

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     +      A G   IN         +              +  ++ A 
Sbjct: 732 TREGMSIRFAESNVRSMGRNATGVRGIN---------LEKTDAVVALAVLVPDATLLVAG 782

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R    ++   +R GK  + + + D+    +   T    ++I+L T+ GQ VR  
Sbjct: 783 ENGIGKRTDFGEYRVQSRGGKGIITMKTNDKTGGVVGALTVRDNDEIMLITEAGQMVRIS 842

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           +  IR  AGRN+ GV+ I+L  GD++ +++ V+  + +  E    ++ +  +
Sbjct: 843 VKDIRE-AGRNTQGVKLINLEAGDKLQAISPVISEEKEEAETGDAIEPLKQE 893


>gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 812

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/891 (39%), Positives = 534/891 (59%), Gaps = 86/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + I  E++ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K + K
Sbjct: 8   EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A I GEVMGKYHPHG+AAIY  + ++AQ++++R  L++G GNFGS+DGD  AA RYTE 
Sbjct: 68  SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  LL D+ KDTVD+RPNYD S +EP VL AR PN+L+NG  GIAVGMATNIP H
Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V G    IDNPDI ++ LM+ I GPDFPTG ++    GI+ AY TGRG+I  R  
Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGILE-ARGIRQAYETGRGTIRTRAR 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+  G +  IVVTEIPYQVNKA ++EKIAELVR+K++  I DLRDESDR+G R+VIE
Sbjct: 247 YEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L++  + +VILN+L+R+T ++  F + M++L   +P    L  +++ +V  R+EV+ RRT
Sbjct: 307 LRKDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGEPRILNLKEMIQYYVEHRQEVINRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y LN A++R H+L GL IA+ NLDE++ +IR S + E AR EL  R             
Sbjct: 367 TYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSR------------- 413

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q  AIL++RL +LTGL R  + NE   + + I +  DIL+ 
Sbjct: 414 -------------FNLSEIQANAILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILAR 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             R+L +IK++L  ++      RRT I +     E+ED I   ++V+T+S+ GYVKR PL
Sbjct: 461 PERVLSMIKEDLDDIEKRYGDNRRTEISQEESSYEEEDFIDDHEVVITLSNRGYVKRQPL 520

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR+Q+RGGKG S   +R EDF  D+ + S   ++LFF++ G V+  + +++P  S QA
Sbjct: 521 DTYRSQKRGGKGVSATTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQA 580

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  L+N L L  GE++TTI+   E        +++  TK G +++  L  F  + +SG 
Sbjct: 581 KGMPLVNFLELRPGEKVTTIVGAREFNR---EHHLLMVTKKGIIKKTALKAFQNVRKSGL 637

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V      + +++    G  + F    +R   GR + GV+ I+L+K D
Sbjct: 638 IAVNLREDDELVGVIRVKTGSKVMIANSRGISIMFDEKQVRSM-GRTAAGVKAINLSKDD 696

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+ +                                                     + 
Sbjct: 697 YVVGL-----------------------------------------------------DR 703

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +L V+EKG+GKRT+  +F++ NR GKG++A ++++ N  G LVA   V+  D++
Sbjct: 704 YREGADVLLVTEKGYGKRTALSEFKLQNRGGKGLKAIEITRRN--GKLVAFQIVSKEDEL 761

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++++ +G +IR+ V +I    R ++GV++    +++R+V V R +  +  D
Sbjct: 762 VILTSEGNIIRLEVEDISQQKRYSRGVLLMRLPEEDRIVGVARFKIEKEED 812


>gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018]
 gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018]
          Length = 860

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/900 (40%), Positives = 546/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE     +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ +    +  +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    +   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D                                            
Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|19551262|ref|NP_599264.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|62388905|ref|YP_224307.1| DNA gyrase subunit A [Corynebacterium glutamicum ATCC 13032]
 gi|21322777|dbj|BAB97406.1| DNA gyrase (topoisomerase II) A subunit [Corynebacterium glutamicum
           ATCC 13032]
 gi|41324238|emb|CAF18578.1| DNA TOPOISOMERASE (ATP-HYDROLYSING) [Corynebacterium glutamicum
           ATCC 13032]
          Length = 856

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/915 (37%), Positives = 522/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +  +   +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MSDD----NTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   + MG +HPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 57  FDNGYRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD +        M+ ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE+  G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I
Sbjct: 237 IHDAYTTGRGSIRMRGVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN L++++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP P+ AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E Q  AIL ++L RL  L R  I +
Sbjct: 416 GLMS--------------------------LLDVDEAQADAILAMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +   IL+S  R   I++ EL  + ++    RR++I+    D+ +ED I R
Sbjct: 450 ELAEIELEIADLKAILASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++  GY KR  +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 510 ENVVITITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNY 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L    GE+I  ++         +  Y+V AT HG
Sbjct: 570 GRVYRLKAFELPEASRTARGQHVANLLEFQPGEQIAQVIQLESYN---DFPYLVLATAHG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L D+      G IA+ L+  D ++    C +E+D+LL ++ GQ +RF      +
Sbjct: 627 RVKKSRLLDYESARSGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++SM++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFRDNDQLLSMSVVRDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT   D+    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV+   V ++D+I  ++  G ++R  V +IR +SRAT GV + +  +   +++
Sbjct: 753 P--KRGRLVSAIAVEEDDEIFAITSAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLA 810

Query: 894 VERIRESEIVDEAES 908
           +++  E +    AE+
Sbjct: 811 IDKNVEDQGEASAEA 825


>gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 811

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/894 (39%), Positives = 549/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL ++ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEKEKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDTVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+    VS+  + G +V+V  V++++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKVSE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|1226022|emb|CAA58885.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 854

 Score =  833 bits (2152), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/902 (37%), Positives = 513/902 (56%), Gaps = 93/902 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                  ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSA-SSDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG  
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSR 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATN P HNLGE+ +     ++N     +   +A+ME ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNNPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + ++Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDDIQAQAILDMQLRRLAALERQKIVD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D+    RRTRIV     + DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +Y +Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KLSDF      G +A+ L   DE++    C+ E+D+LL +   Q +RF  +   +
Sbjct: 631 LVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANRQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+   + D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNEDDRLLSLNVVRP------------------------------ 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++L  +  G+ KRTS  ++ +  R GKGI      
Sbjct: 720 -----------------------DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  + G+LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ + +++
Sbjct: 757 R--KRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIA 814

Query: 894 VE 895
           + 
Sbjct: 815 IA 816



 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 15/224 (6%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DE L       E+ ++  T+ G   R   + +     R   GV+G  L + D V    + 
Sbjct: 507 DEDLIAR----EDVVVTITETGYAKR-TKTDLYHSQKRGGKGVQGAGLKQDDMVNHFFVC 561

Query: 742 LHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D       +   Y                +  +       E  I++    +      
Sbjct: 562 STHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAP 621

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +++  +  G  K++   DF  SNRSG GI A ++ +      LV     +  D ++LVS 
Sbjct: 622 YLVLATRNGLVKKSKLSDF-DSNRSG-GIVAINLREG---DELVGAVLCSAEDDLLLVSA 676

Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRES 900
               IR    +  +R   RAT GV      +D+R++S+  +R  
Sbjct: 677 NRQSIRFSATDEALRPMGRATSGVQGMRFNEDDRLLSLNVVRPD 720



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 94/285 (32%), Gaps = 72/285 (25%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKG 732
           LD+ DE++++   +Q  DI    + G      I  I+         R     R  +L + 
Sbjct: 398 LDALDEVIALIRASQTVDI---ARAGLIELLDIDDIQAQAILDMQLR-----RLAALERQ 449

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
             V  +A +    AD ++ +   +      R    +  +       + +     +   ++
Sbjct: 450 KIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVDKHGDARRTRIVPADGQVSDED 509

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDND 851
           L  +E  ++T++E G+ KRT +  +    R GKG++   +    +   +V  F V + +D
Sbjct: 510 LIAREDVVVTITETGYAKRTKTDLYHSQKRGGKGVQGAGL----KQDDMVNHFFVCSTHD 565

Query: 852 QIILVSDKGTLIRVPVNEIRIAS------------------RATK--------------- 878
            I+  + +G + R    E+  AS                  R  +               
Sbjct: 566 WILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYEDAPYLVL 625

Query: 879 ---------------------GVVIFSTAKDERVVSVERIRESEI 902
                                G+V  +  + + +V        + 
Sbjct: 626 ATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDD 670


>gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
 gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571]
          Length = 827

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/896 (39%), Positives = 536/896 (59%), Gaps = 86/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++ +++ I +V +T  M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV
Sbjct: 1   MDDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEVMGK+HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD P
Sbjct: 61  TPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  +L D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M TNIP HNL EV+ G   ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+
Sbjct: 181 MTTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGK 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+IV+R  ++IE     RE+I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+
Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I+++R ASA V+LN L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +
Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++VV RRTK+ L KA  RAH+L GL IA+ N+DE+V IIR S + + A+  L+ R     
Sbjct: 361 KDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L + Q++AIL++RL RLTGL RD +  E   L  +I 
Sbjct: 416 ---------------------FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSH 544
           +  DIL+   R+  II  ELL ++      RRT I    ++ +EDED I ++++++TV+H
Sbjct: 455 DYKDILAKPERIDKIIYDELLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTH 514

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+KR+P+  ++ Q RGGKG  G+ ++D DF+  L   STH  +LFF++ G VY +K +
Sbjct: 515 NSYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAY 574

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P     A+G  ++N+L L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+
Sbjct: 575 EIPEYGRMAKGLPVVNLLQLEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSE 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  I  SG IA+ L   DE+ +V T   + +IL+ T LG  V F  + +R   GR + GV
Sbjct: 632 FSNIRNSGLIALTLRDGDELSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGV 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI+L   D V+   ++                                           
Sbjct: 691 RGINLRDHDYVVGSGVLD------------------------------------------ 708

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +L +SEKG+GKRT + ++ +  R GKGI+  ++++ N  G L  V
Sbjct: 709 -----------ADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKN--GPLAGV 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++    I++++  G +IR    ++    R+T GV +   + D +V S+  +   
Sbjct: 756 IVISKGKDIMVITTDGIMIRFKTKDVSQTGRSTMGVRLIKVSDDSQVASLTIVPSE 811


>gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 876

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/850 (45%), Positives = 547/850 (64%), Gaps = 18/850 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIVDAYKTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ ++R +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YL+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL  VK++    RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMHILSSSERLMEVIREELELVKEQFSDARRTEITAASHDIDMEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E E    + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYE---ADKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D ++ V+    +NDI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 SRPRSAGIIAVNLRDEDTLIGVDITDGQNDIMLFSKAGKVVRFSEEQVRGM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+ D+V+S+ IV H + D             +       +     + +    E N 
Sbjct: 722 GIKLAESDKVVSL-IVPHNEGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNG 780

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S     + +  ++F + ++  G   RT   +     R+ +G+     ++      +V + 
Sbjct: 781 SVVGAVQAEDGDEF-MMITNGGTLVRTRVAEVSRVGRNTQGVTLIRTAEDE---QVVGLQ 836

Query: 846 PVND-NDQII 854
            +++  +++I
Sbjct: 837 RIDEPEEELI 846



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/426 (16%), Positives = 157/426 (36%), Gaps = 29/426 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL++  +  H+L      +  + E + +++       ARR  +  + + 
Sbjct: 469 EHEKILEEYKALLDEIAELMHILSSSERLMEVIREELELVK--EQFSDARRTEITAASHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D++DLI   D            Y  ++ +    + R  +     R    + +  L +  
Sbjct: 527 IDMEDLITQEDVVVTLSHEGYVKY--QILSDYEAQRRGGKGKAATRMKEEDFIERLLVAN 584

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
                +  S    +  +K   L +     T R   IV  L   E+E             +
Sbjct: 585 THDTILCFSSRGRMYWLKVYQLPLASR--TARGKPIVNILPLEENERITAILPVREYEAD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             V   +  G VK+ PL+ +   R  G     V +RDED +  + I      ++ FS  G
Sbjct: 643 KFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLRDEDTLIGVDITDGQNDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L + +++ +++         N   V+  T++G 
Sbjct: 701 KVVRFSEEQVRGMGRTA---AGVRGIKLAESDKVVSLI------VPHNEGDVLTVTENGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++   +R+ +  + +        ++        ++ ++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPAKSRATQGVVSIKVSERNGSVVGAVQAEDGDEFMMITNGGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ +QV+ +  +   + +  E    ++  + +            
Sbjct: 812 -SRVGRNTQGVTLIRTAEDEQVVGLQRIDEPEEELIEDAELVEGDAVENTEQPAADTGSD 870

Query: 774 SLKNDS 779
                 
Sbjct: 871 ESAEQE 876


>gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3]
          Length = 878

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/908 (40%), Positives = 551/908 (60%), Gaps = 59/908 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  +       + +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +
Sbjct: 2   EKDVKEFSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
                +K Y KCA   GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDG
Sbjct: 62  ADNTSSKPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE R+ K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GI
Sbjct: 122 DPPAAYRYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNL EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY 
Sbjct: 182 AVGMATNIPPHNLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYY 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +RG + I +  G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDE
Sbjct: 242 TGRGKITLRGKAEIVE-EGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDE 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G R+V ELKR  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++
Sbjct: 301 SDKDGMRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYI 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AF+++++ RRT + L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R  
Sbjct: 361 AFQKQIITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFK 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                K L   + ++   +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  
Sbjct: 421 EDDLAKLLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIME 480

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + LDILSS  R+  IIK+E+ ++K++    RRT I     +++ ED I  E+ V+T 
Sbjct: 481 KINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPISGEVDIEDLIPEEECVLTY 540

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +++GY+KR P+ VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K
Sbjct: 541 TNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLK 600

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P GS Q+RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L
Sbjct: 601 CYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFA---ENKYFICVTKYGKIKRTPL 657

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            DF  + ++G  A+ L   DEI +      ++ I++ T LG  + F    IR   GR + 
Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIIATHLGMAIHFSEDKIRSM-GRLAA 716

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR I L + D ++  A V   D                                     
Sbjct: 717 GVRAIKLREDDYIVGAAKVYSDDMR----------------------------------- 741

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILTV++KG+G+ ++  D+R+ NR G G++   +   ++ G + 
Sbjct: 742 -----------------ILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVC 782

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +  +D +IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E 
Sbjct: 783 GIRSIQTDDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDET 842

Query: 903 VDEAESTE 910
            D  E  +
Sbjct: 843 ADIEEVEQ 850


>gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 811

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/894 (40%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 VFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTTIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E  S      VVF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSSEKE---VVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  VN+++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVNEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|124026229|ref|YP_001015345.1| DNA gyrase subunit A [Prochlorococcus marinus str. NATL1A]
 gi|123961297|gb|ABM76080.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 872

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/918 (37%), Positives = 537/918 (58%), Gaps = 73/918 (7%)

Query: 1   MTEHIISS---DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  +     E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPNSTGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDSRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIESETVDFADNFDGSVQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I NP+++   LM II+GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLAELIDGLMALISNPELEEIDLMNIIKGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           IK  Y +G+GSI +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IA++V +K+
Sbjct: 241 IKETYLSGKGSITMRGVAEIETIENPGRPDRDAVIITELPYQTNKAGLIERIADMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  IAD+RDESDR G R+V+EL+R +   V+LN L++ T LQ+ FS NM+AL   +P   
Sbjct: 301 LEGIADIRDESDRDGMRIVVELRRDSYPQVVLNNLFKLTPLQTNFSANMLALVNGEPVIL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L  +L+ F+ FR E + +RTKYLL KA  R H+L+GL +A+  LDE++ +IR + +  T
Sbjct: 361 SLRKMLQVFLDFRVETIEKRTKYLLKKAESRDHILLGLLLALDQLDEIISLIRSASDSTT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A+ +L +                             L+++Q+ AIL+++L RLT L  D 
Sbjct: 421 AKNKLQE--------------------------LHGLTDIQSDAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL+ + R+  I K EL  +K++ +T RRT I++    +ED D 
Sbjct: 455 IRLEHEDLVKKIIDLKDILNKKERVFEITKIELNEIKEKYNTQRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P++ + A  RG +G++G   + E+ V      + H S+L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVNEFEATSRGTRGKAGTRSQGEEEVKKFISCNDHDSLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++     +   +  Y++  T
Sbjct: 575 SDRGISYALPAYRVPQCSRTAKGTPIVQLLPIPREEAITSLLSVSSFD---DENYLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 RGGYIKRTPLSAFSKIRANGLIAIGLEDGDALTWVRLAESGDSVLIGSKNGMTIHFRLND 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR++ GV+ ++L  GD ++SM ++    AD+ ++    +  S           
Sbjct: 692 SELRPL-GRSARGVKSMNLKSGDSLVSMDVLSTELADHVDKSEEDELQSESSESE----- 745

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                       ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 746 --------------------------GPWVLVASGSGLGKRVPMTQFRLQKRAGMGLRAI 779

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS++G ++R   ++I   SRA  GV I      ++
Sbjct: 780 KF--RKDGDELVGLRVLGKGEELLLVSERGVIVRTSADKISQQSRAATGVRIQKLDNGDK 837

Query: 891 VVSVERIRESEIVDEAES 908
           +  V  +   +I D+ E+
Sbjct: 838 LSEVVLVPPEQINDDDEN 855


>gi|145294055|ref|YP_001136876.1| DNA gyrase subunit A [Corynebacterium glutamicum R]
 gi|140843975|dbj|BAF52974.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 856

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/915 (37%), Positives = 523/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +  +   +  + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MSDD----NTGQFDRVNPIDINEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   + MG +HPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 57  FDNGYRPDRSYVKSAKPVADTMGNFHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTLEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD +        M+ ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDAEESEALEACMKFVKGPDFPTAGLIIGDKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE+  G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I
Sbjct: 237 IHDAYTTGRGSIRMRGVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN L++++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLFKHSQLQANFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP P+ AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDKAEERAHLLRGLVKALDMLDEVIALIRRSPTPDEART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E Q  AIL ++L RL  L R  I +
Sbjct: 416 GLMS--------------------------LLDVDEAQADAILAMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+S  R   I++ EL  + ++    RR++I+    D+ +ED I R
Sbjct: 450 ELAEIELEIADLKDILASPERQRTIVRDELTEIVEKYGDERRSQIIAATGDVSEEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++V+T++  GY KR  +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 510 ENVVITITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNY 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L    GE+I  ++         +  Y+V AT HG
Sbjct: 570 GRVYRLKAFELPEASRTARGQHVANLLEFQPGEQIAQVIQLESYN---DFPYLVLATAHG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L D+      G IA+ L+  D ++    C +E+D+LL ++ GQ +RF      +
Sbjct: 627 RVKKSRLLDYESARSGGLIAINLNEDDRLIGAALCGEEDDLLLVSEFGQSIRFTADDEQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++SM++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFRDNDQLLSMSVVRDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT   D+    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G LV+   V ++D+I  ++  G ++R  V +IR +SRAT GV + +  +   +++
Sbjct: 753 P--KRGRLVSAIAVEEDDEIFAITSAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLA 810

Query: 894 VERIRESEIVDEAES 908
           +++  E +    AE+
Sbjct: 811 IDKNVEDQGEASAEA 825


>gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
 gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043]
          Length = 903

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/903 (39%), Positives = 514/903 (56%), Gaps = 91/903 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
            I  D ++   +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G
Sbjct: 34  PIERDPDQHDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGG 93

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              ++ Y KCAR+ G+VMG YHPHG++AIYDAL R+ QDWS+R  L++GQGNFGS   D 
Sbjct: 94  YRPDRGYNKCARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDG 153

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTECR+   A  ++ D+ +DTVDF PNYDG   +P VL +R+PN+LVNG  GIAV
Sbjct: 154 AAAPRYTECRMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAV 213

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNA 240
           GMAT IP HNL EV +G    + +P+I  + L+E    II+GPDFPTG++I+G  GI++A
Sbjct: 214 GMATQIPPHNLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHRGIEDA 273

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI++R + ++E+   +R+ +VVT++PYQVN   +  KIA+LV++ +I  IAD+ 
Sbjct: 274 YRTGRGSIIMRAIVNVEEIK-NRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIA 332

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P    L G ++
Sbjct: 333 DETSGRTGLRIVITLKRDAVAKVVLNNLYKHTQLQTTFGANMLALVDDVPRTLPLDGFIR 392

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  + EV+ RRT + L KA    H+L G   A+  LDEV+ +IR S   E AR  L+Q
Sbjct: 393 HWVDHQIEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQ 452

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                      + + E Q +AIL ++L RL  L R+ I+ + + 
Sbjct: 453 --------------------------LLDIDETQAQAILNMQLRRLAALERERIQQQHDE 486

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+S  R   I+ +EL  + D+    RRT IV    DM  ED I  ED+V
Sbjct: 487 LQELIDEYQAILASEVRQREIVSEELQGIVDKYGDERRTEIVPFDGDMSMEDLIPEEDVV 546

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++  GY KR    +YR+QRRGGKG  G  +R ED V   F  +TH  +LFF++LG VY
Sbjct: 547 VTITRGGYAKRTRTDLYRSQRRGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVY 606

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + LP GS  ++G+ + N+L+   GE+I  ++   + E++    Y+V AT+ G V++
Sbjct: 607 RAKGYELPEGSRDSKGQHVANLLAFQPGEQIAQVLAIHDYEAAD---YLVLATRAGLVKK 663

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFA 717
            +L D+      G IA+ L   DE++        +D+LL ++ G  VRF  +   +R   
Sbjct: 664 TRLRDYDSPRSGGLIAINLREGDELVGARLVAAADDLLLVSRKGMSVRFTATDSALRPM- 722

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GV G+    GD ++SM+ V                                    
Sbjct: 723 GRSTSGVTGMKFRPGDTLLSMSRVP----------------------------------- 747

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              +  +  V E G  KRT   ++R+  R G GI+   +S+  +
Sbjct: 748 ----------------AETDVDVFVVFENGLAKRTPVSEYRVQGRGGYGIQVAKLSE--K 789

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LV    V  ND++++V +KG ++R  V+E+R  SR+T+GV   +  K + +V+V R 
Sbjct: 790 GGDLVGALTVTGNDEVMVVMEKGKIVRSRVDEVRHTSRSTQGVRFAAPDKGDAIVAVARN 849

Query: 898 RES 900
            ES
Sbjct: 850 AES 852



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 97/259 (37%), Gaps = 11/259 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               D +V  +  G VK+  L  Y + R GG     +   DE     L   +    +L  
Sbjct: 646 YEAADYLVLATRAGLVKKTRLRDYDSPRSGGLIAINLREGDELVGARLVAAA--DDLLLV 703

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +       +  P  R  + +  +    G+ + ++   P +     ++ V    
Sbjct: 704 SRKGMSVRFTATDSAL-RPMGRSTSGVTGMKFRPGDTLLSMSRVPAET----DVDVFVVF 758

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R  +S++    R   G    KL     +++   T T  +++++  + G+ VR  
Sbjct: 759 ENGLAKRTPVSEYRVQGRGGYGIQVAKLSEKGGDLVGALTVTGNDEVMVVMEKGKIVRSR 818

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +R    R++ GVR  +  KGD ++++A    +  + +         +A    I+   
Sbjct: 819 VDEVRH-TSRSTQGVRFAAPDKGDAIVAVARNAESVTEEELEEVGDLEGTAPTSPITTVP 877

Query: 770 EEITSLKNDSSVEGNISEE 788
                  + S      S +
Sbjct: 878 STDGVPSDGSDEPTTESSD 896


>gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a]
          Length = 878

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/908 (40%), Positives = 551/908 (60%), Gaps = 59/908 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  +       + +  V I  EM+ S+L Y++ V++ RA+PD+RDG+KPVHRRI++ M +
Sbjct: 2   EKDVKEFSTATEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
                +K Y KCA   GEV+GKYHPHG+A++YDAL R+AQD+S+R  LI+G GNFGSVDG
Sbjct: 62  ADNTSSKPYRKCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE R+ K A  LL D+ KDT+D+  NYD    EP VL  ++PN+LVNG  GI
Sbjct: 122 DPPAAYRYTEARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNL EV D  VA +DNP+  ++ +++ I+GPDFPTG +I+G +GI++AY 
Sbjct: 182 AVGMATNIPPHNLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIMGYSGIRSAYY 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +RG + I +  G+  +I+VTEIPY VNK+ +LE   +L+R+KRI  I++LRDE
Sbjct: 242 TGRGKITLRGKAEIVE-EGNHSRIIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDE 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SD+ G R+V ELKR  +A V+LN+LY +T LQ    V M+AL   +P++ TL+ IL  ++
Sbjct: 301 SDKDGMRIVYELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGEPKQLTLLEILDNYI 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AF+++++ RRT + L KAR+RAH+L G  +A+ N+DEV+ I+R S + +  +  LM+R  
Sbjct: 361 AFQKQIITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFK 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                K L   + ++   +  +  + LSE Q  AI+++RL +LTGL RD + +EL  +  
Sbjct: 421 EDDLAKLLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIME 480

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I + LDILSS  R+  IIK+E+ ++K++    RRT I     +++ ED I  E+ V+T 
Sbjct: 481 KINDFLDILSSDERVKEIIKEEITAIKEKYGDERRTAIEPVSGEVDIEDLIPEEECVLTY 540

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +++GY+KR P+ VY  Q+RGGKG SG+  R+EDFV D+FI STH ++LF ++ G +YK K
Sbjct: 541 TNIGYIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLK 600

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P GS Q+RG  ++N+L L++GERI  +M   +      N Y +  TK+G ++R  L
Sbjct: 601 CYEVPEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFA---ENKYFICVTKYGKIKRTPL 657

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            DF  + ++G  A+ L   DEI +      ++ I++ T LG  + F    IR   GR + 
Sbjct: 658 YDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSM-GRLAA 716

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR I L + D ++  A V   D                                     
Sbjct: 717 GVRAIKLREDDYIVGAAKVYSDDMR----------------------------------- 741

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            ILTV++KG+G+ ++  D+R+ NR G G++   +   ++ G + 
Sbjct: 742 -----------------ILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKI--RDDRGYVC 782

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +  +D +IL+S  G +IR+  N++R+  R   GV +   + ++RVV+  R    E 
Sbjct: 783 GIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDET 842

Query: 903 VDEAESTE 910
            D  E  +
Sbjct: 843 ADIEEVEQ 850


>gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
 gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672]
          Length = 864

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/926 (38%), Positives = 522/926 (56%), Gaps = 102/926 (11%)

Query: 1   MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+       EE       +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+
Sbjct: 1   MTDENTPVTPEEGGDVAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ W++R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP H L EV  G    ++NP+   + L++     I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHTLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVAVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +VA + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR                           G    + + ++Q  AILE++L RL  L R 
Sbjct: 420 IAR--------------------------GGLRDLLAIDDIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E   IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED
Sbjct: 454 KIVQEHDELQAKIDEYNGILASPVRQRGIVSEELAALVEKYGDDRKTKLIPYEGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVTRGGYIKRTRTEDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I    + E+     Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPEAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q +
Sbjct: 631 TKSGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELVSADDDLLLISKKAQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  +   +R   GR + GV+G+S  +GD+++SM +V                       
Sbjct: 691 RFTATDDTLRPM-GRATSGVKGMSFREGDELLSMNVVRPGT------------------- 730

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                             F+ T ++ G+ KRT+  ++R+  R G
Sbjct: 731 ----------------------------------FVFTATDGGYAKRTAVDEYRVQGRGG 756

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+A  + +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + +
Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLIN 814

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
             K + VV + R  E+    E    +
Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGD 840



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/248 (19%), Positives = 96/248 (38%), Gaps = 14/248 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +  R++    +L           +L  S
Sbjct: 625 PYLVLATKSGLVKKTPLKDYDSPRSGGVIAINLREREDGTDDELIGAELVSADDDLLLIS 684

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +          P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 685 KKAQSIRFTATD-DTLRPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 737

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 738 GGYAKRTAVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 797

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + IR   GR+++GV+ I+L K D V+ +A    A  + +E    +    +     +  T+
Sbjct: 798 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDESGEGAAATGTD 856

Query: 771 EITSLKND 778
           E  +  ++
Sbjct: 857 EGEAPSSE 864


>gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
 gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13]
          Length = 811

 Score =  833 bits (2151), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/894 (39%), Positives = 548/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYEIMKKELLELKEKYNDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG S +   ++DF   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDTVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V++++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|116073097|ref|ZP_01470359.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
 gi|116068402|gb|EAU74154.1| DNA gyrase subunit A [Synechococcus sp. RS9916]
          Length = 878

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/919 (38%), Positives = 534/919 (58%), Gaps = 71/919 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +   +    E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPVGPGNGGPGESDDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNLGE+++G +A+I+NP+++ + L+ II GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLGELINGLLALIENPELEEEELLRIIPGPDFPTGGQILGRAG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR + +  T
Sbjct: 361 TLRRMLQVFIDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L +R                            L+++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQERH--------------------------GLTDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII++EL  ++D     RRT I+     +ED D 
Sbjct: 455 IRLEHEDLVAKIADYKDILGRRERVFGIIQEELTQLRDRYPIERRTEILNIAAGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E ITT++   E     ++  ++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITTLLAVSEFS---DDSDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ T+ G  + F +S 
Sbjct: 632 SGGFIKRTRLSAFSNIRSNGLIAINLEEGDALTWVRQAVPGDSVLIGTRAGMTIHFRLSD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L  GD ++SM ++                             
Sbjct: 692 EELRPL-GRTARGVRSMNLRDGDALVSMDVLP---------------------------- 722

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +      +    + +++       +  ++L  S  G GKR     FR+  R+G G+R  
Sbjct: 723 -VELADKVAQSSDDAADDDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGM 781

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                N+   LVA+  +   ++++LVS+KG ++R   + I   SRA  GV +    K + 
Sbjct: 782 KF--RNQGDELVALRVLGAGEELLLVSEKGVIVRTSADAIPQQSRAATGVRLQKLDKGDS 839

Query: 891 VVSVERIRESEIVDEAEST 909
           ++ V  +      DE ++ 
Sbjct: 840 LLKVVLVPPQAESDEDDAD 858



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 96/261 (36%), Gaps = 23/261 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G++KR  LS +   R  G     + + + D +T +       SVL  
Sbjct: 621 FSDDSDLLMLTSGGFIKRTRLSAFSNIRSNG--LIAINLEEGDALTWVRQAVPGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN---------------ILSLNQGERITTIMP 635
           +  G    ++     L      ARG   +N                L+    +       
Sbjct: 679 TRAGMTIHFRLSDEELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADKVAQSSDDAAD 738

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQ 692
             E  ++    +V+ A+  G  +R  ++ F    R+G     MK  +  DE++++     
Sbjct: 739 DDEGSAASEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRGMKFRNQGDELVALRVLGA 798

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
             ++LL ++ G  VR    AI     R + GVR   L KGD ++ + +V       ++  
Sbjct: 799 GEELLLVSEKGVIVRTSADAI-PQQSRAATGVRLQKLDKGDSLLKVVLVPPQAESDEDDA 857

Query: 753 CYMKHMSAQRRLISGDTEEIT 773
                 +    +     E+ +
Sbjct: 858 DATAPDTEAAEVPETSAEQDS 878


>gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
 gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963]
          Length = 852

 Score =  832 bits (2150), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/892 (42%), Positives = 536/892 (60%), Gaps = 86/892 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I +V+I ++M  +YL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M QMG++ N+ Y KC
Sbjct: 5   NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A   GEV+  YHPHG+A++Y+AL RMAQ WS+R  L+ GQGNFGS D DPPAA RYTE +
Sbjct: 65  AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF PNYD   +EPVV  AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ DG + +I+NP+   + L  I+RGPDFPTG +I GR GI+N YA GRG IVIR  +
Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLIQGREGIRNTYANGRGRIVIRART 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE+    R  I+ TE+PYQVNKA +++KIAEL R+KRI  I+++RDESDRQG R+V+EL
Sbjct: 245 HIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVEL 304

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+   ILN L++YT++QS F+ NM+AL   +P+  TL   L+ ++  RE+V+ RRT+
Sbjct: 305 KRDANPRSILNSLFKYTAMQSSFNTNMLALVDSQPQTLTLKKFLQHYITHREQVITRRTQ 364

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA  R H+L GL IA+ NLDEV+ IIR S            R   A   ++L    
Sbjct: 365 FELRKAEARKHILEGLKIAMDNLDEVINIIRGS------------RRETAGLAEEL---- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T   S  Q RA+L++RLA L  L R  + +EL  +   I     +LS  
Sbjct: 409 ---------QQTFGFSNEQARAVLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDI 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + + GII  +L  +K++    RRT I E  + D +DED I  E++VVT++  GY+KR+P 
Sbjct: 460 NEIRGIIMADLKELKEKFGDARRTEIEEGEVRDFKDEDLIPNEEVVVTLTEKGYIKRLPS 519

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQRRGG+G +G+  R++D V  L +  TH S+LFF+  G V++ +V+ LP  S  A
Sbjct: 520 GTYRAQRRGGRGVTGMATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTA 579

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ LIN++S+ Q ER+T I+  P+  +     ++V ATK G V++  +SDF  + RSG 
Sbjct: 580 RGEHLINLISIEQRERVTAIVYVPKGHTHD---FLVVATKKGEVKKTAMSDFEVVRRSGL 636

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IAM L+  DE++  +    E D+LL T  G  +RF +  +R  A R S GVRGI L   D
Sbjct: 637 IAMNLEDDDELIGAKLVGPEADVLLITLHGHAIRFGVDQLRS-ASRTSGGVRGIRLTDDD 695

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S+  V+                                                   
Sbjct: 696 TVVSLNAVIP-------------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-Q 852
                 +L V+E G+GKRT   ++   NR G G+  + V++  + G + +   V + D  
Sbjct: 706 ---GGELLVVTEHGYGKRTPIDEYPTYNRGGSGVLTSKVTE--KTGKVASARMVTEEDND 760

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++L+S  G +IR  V+ +R A RAT+GV + + A+D++VV+V      +  D
Sbjct: 761 LMLISASGVVIRTDVSLVRQAGRATQGVTLMNLAEDDKVVAVAVANGKKTDD 812


>gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
 gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693]
          Length = 812

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/884 (40%), Positives = 543/884 (61%), Gaps = 86/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G RVVIE
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++LS 
Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL +KD+ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NSKIYEIMKKELLELKDKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE+++  +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVSDTIVIKEFLPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K+   D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++ ++  G +IR  ++EI    RAT+GV I   A +E+V ++ 
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801


>gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B']
          Length = 874

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/902 (39%), Positives = 534/902 (59%), Gaps = 97/902 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E   I  V I DEM+N Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++ +  +K
Sbjct: 3   NTEFDKIIPVDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K ARI G+ MGKYHPHG+A+IYDA+ R+AQ+++ R  L++G GNFG+VDGD  AA R
Sbjct: 63  QYRKSARIVGDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K   ++L D+ K+TVDFRPN+D S +EP VL ARYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKLTMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           IP HN+GEV+   + +IDN           + + + LMEI+ GPDFPTG  ILGR GI+ 
Sbjct: 183 IPPHNMGEVIXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQILGRYGIEQ 242

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G + IR  + IE+ S  +  I++TEIPYQVNK+ ++EKIAELV+ K++  I  +
Sbjct: 243 AYRTGKGKVKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGI 302

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIEL+R  +A++ILNQLY+++ LQ  FS+NM+AL   +P  F L  +L+
Sbjct: 303 RDESDRDGMRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGEPHVFNLKEMLE 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA--VANLDEVVRIIRFSPNPETARREL 417
           A++  +++V+ RRT++ L+KA+ RAH++ G  I      +D V+ +IR S     A+ +L
Sbjct: 363 AYLDHQKQVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKL 422

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +++                            LSE+Q +AI+++RL  LTGL  D +  E 
Sbjct: 423 IEKI--------------------------GLSEIQAQAIMDMRLRVLTGLEHDKLTQEF 456

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           N L  +I     +L    +LL +IK+EL+ V+++   PRR+ +     +++ ED I  E+
Sbjct: 457 NELXDKIAYLKSLLEHEDQLLKVIKEELIVVREKFTDPRRSELSLLDDEIDIEDLIDEEE 516

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VVT++H GY+KR PL  Y+ Q+RGG+G  GV   +EDF+  LF  S    ++FF++ G 
Sbjct: 517 VVVTITHFGYIKRXPLVTYKEQKRGGRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGR 576

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            YK K +++P  S  ARG A++N+L LN  E+I+ + P  ++E      Y+   TK G +
Sbjct: 577 AYKIKAYKIPEASRTARGLAIVNLLHLNVDEKISAVFPVKQNEH---ERYLTMITKKGLI 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  ++ F  I + G IA+ +   DE++ V   T ++ I++ TK G  + F    IR   
Sbjct: 634 KKTNITAFNNIKKGGIIALTMQDADELVGVYETTDQDKIIIATKKGLGIMFEGKNIRP-T 692

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVR I+L+K D VIS  I    +                                
Sbjct: 693 GRTAKGVRAINLSKEDYVISATIPKEGE-------------------------------- 720

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 IL  ++ G GKRT   +F+   R GKG+    V   ++
Sbjct: 721 ---------------------QILIATKNGIGKRTRIDEFKSQRRGGKGLIIYKVD--DK 757

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA+  V+D++ +++++ +G +IR+ V++I    R  KGV + +      VV +E++
Sbjct: 758 TGDVVAITSVSDSNGLLMITSEGVIIRIKVSQISSLGRYAKGVKLINLTDGIHVVCMEKV 817

Query: 898 RE 899
            E
Sbjct: 818 AE 819



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 100/268 (37%), Gaps = 15/268 (5%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E  +  ++  G +K+  ++ +   ++GG     +   DE  +  ++  +    ++  +
Sbjct: 619 EHERYLTMITKKGLIKKTNITAFNNIKKGGIIALTMQDADE--LVGVYETTDQDKIIIAT 676

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G     +   +      A+G   IN+   +                      ++ ATK
Sbjct: 677 KKGLGIMFEGKNIRPTGRTAKGVRAINLSKEDY---------VISATIPKEGEQILIATK 727

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPI 710
           +G  +R ++ +F    R GK  +     D+   V   T  +D   +L+ T  G  +R  +
Sbjct: 728 NGIGKRTRIDEFKSQRRGGKGLIIYKVDDKTGDVVAITSVSDSNGLLMITSEGVIIRIKV 787

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I    GR + GV+ I+L  G  V+ M  V     + +E     +    +        +
Sbjct: 788 SQISSL-GRYAKGVKLINLTDGIHVVCMEKVAEFIEESEELEELEELEELEELQEEVIEK 846

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQ 798
               + ++ + E   +E   + L+  ++
Sbjct: 847 LPNEILDNITNELIEAEIVVEVLEPPKE 874


>gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
 gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314]
 gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens
           YS-314]
          Length = 863

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/903 (38%), Positives = 521/903 (57%), Gaps = 97/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     + E    I  + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRR+L+ M
Sbjct: 1   MSDD----NNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   + MG YHPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 57  YDNGYRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TV+F PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD D    L+  ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE+  G+R  IV+TE+PYQVN   ++  IAE VR+ ++V I
Sbjct: 237 IHDAYTTGRGSIRMRGVTSIEE-EGNRTVIVITELPYQVNPDNLISNIAEQVRDGKLVGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN L++++ LQS F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLFKHSQLQSNFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  E AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARD 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + ++Q  AILE++L RL  L R+ I N
Sbjct: 416 GLMS--------------------------LLDVDQIQADAILEMQLRRLAALEREKIVN 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           ELN L   I +  DIL+S  R   I++ EL  + ++    RR++I+    D+ +ED I R
Sbjct: 450 ELNELETIIADLKDILASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDAYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     ERI  ++     E   +  Y+V AT  G
Sbjct: 570 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQTYE---DAPYLVLATAQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++      + +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+   +GDQ+++M++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFREGDQLLAMSVVRDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT   ++    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTPISEYSTQGRGGLGVVTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V ++D+I  ++  G +IR  VN+IR +SRAT GV + +   D  +++
Sbjct: 753 P--KRGRLIGALAVEEDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLQDDVELLA 810

Query: 894 VER 896
           +++
Sbjct: 811 IDK 813



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    AD  + +   +   A  R    +  E    +  S +     +   ++L  +E  +
Sbjct: 454 LETIIADLKDILASPERQRAIVRDELAEIVEKYGDERRSQIIAATGDVSEEDLIARENVV 513

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDK 859
           +T++  G+ KRT    ++   R GKG+R  ++    +   +V  F V+   D I+  ++ 
Sbjct: 514 VTITSTGYAKRTKVDAYKSQKRGGKGVRGAEL----KQDDIVRHFFVSSTHDWILFFTNF 569

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902
           G + R+   E+  ASR  +G  + +  +   +ER+  V +I+  E 
Sbjct: 570 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQTYED 615


>gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 860

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/900 (41%), Positives = 547/900 (60%), Gaps = 87/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I +V+I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M  + +     Y
Sbjct: 6   ENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSKSAY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  +L DL KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 EARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + +ID P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE     +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVV
Sbjct: 246 AKHHIET-KAKKEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A ++++LN LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVLNNLYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IAV N+DEVVRIIR S N   A+  L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL
Sbjct: 414 ---------------FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L  II++EL  +K++    R+T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 RSEEKLNEIIREELTEIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  Q+RGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS 
Sbjct: 519 PIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P P+ +    +  +VF T++G ++R  L++F  I  +
Sbjct: 579 IAKGKAVVNLINLRPDEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +    +   I++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   ++   D                                            
Sbjct: 695 IDTDFVVDADVISSED-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q ILTVSEKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D
Sbjct: 711 --------QEILTVSEKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDD 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++L++  G +IRV +N IR A R T GV+I +   +++VVS+ +  + +   E +  
Sbjct: 761 TQDLMLLTSIGKMIRVDMNTIRKAGRNTSGVIIVNVDSNDKVVSIAKCPKEDEEIELDEN 820


>gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
 gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana)
           str. BPLAN]
          Length = 817

 Score =  832 bits (2149), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/893 (37%), Positives = 520/893 (58%), Gaps = 84/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I DEM++SY+ Y+++VI+ RA+PD RDGLKPVHRR+L+GM Q+G+  N  
Sbjct: 2   NEGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++Y+ + RMAQ W+LR  LI+GQGNFGS+D DPPAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R++K +  +L D+ K+TVD + N+D S +EP VL  R PN+L+NG  GIAVGMATNI
Sbjct: 122 TEVRMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E +    A I+N  I ++ +ME I+ PDFPTG +I G  G+K A+ TGRG IV+
Sbjct: 182 PPHNLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIYGYEGVKKAFYTGRGRIVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+E+    R+ I+V EIPYQVNKA M+ +  EL+RE ++  I  +RDESDR G R+
Sbjct: 242 RAKVHLEEIQ-GRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V  LK+  +  ++LN L++YTSLQ+ F+VN +AL   KP +  +  +++ FV  R++V++
Sbjct: 301 VYLLKQNTNPHILLNNLFKYTSLQTYFNVNNIALVKGKPVQLNIKDLIQHFVDHRQDVII 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTKY L K +DR H L G    + +LD+++ +I+ S +   A   L++           
Sbjct: 361 RRTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIK----------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q+R+IL++RL  LT L    I+ E   L  +I    ++
Sbjct: 410 ---------------MFKLSENQSRSILDMRLQNLTSLELKKIKKEYEELVKKIAYLKNV 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L   S  + IIK+ELL ++D+    RRT+I     ++  ED I  E +V+T+SH GY+KR
Sbjct: 455 LIQHSIRMQIIKKELLDIQDKYQDKRRTQIDYLGNEVHIEDLIEDEQVVLTISHAGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y+ Q RGG G  G   R+ DF   L I + H  +LFF+  G  +  +V+ +P GS
Sbjct: 515 TSLSEYKRQGRGGIGNRGASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGS 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             ++G+A+ N++ L   +++   +   +  ++    N YV+  T+ G +++  L ++ + 
Sbjct: 575 KISKGRAIQNMIHLQPDDKVNAYILTGDLTNKKYVQNHYVMMVTQKGIIKKTSLENYSRP 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + G  A+ +   D +L        + + +  K G+ +RF    +R   GRNS GVRGI+
Sbjct: 635 RKDGINAIVIRKGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRA-TGRNSSGVRGIN 693

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L+   D VI M  V                                              
Sbjct: 694 LSISEDTVIGMICVE--------------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   ++ ++L VSEKGFGKRT+  D+RI+NR GKGI+  ++++  + G+L+++  V
Sbjct: 709 ------GQEKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQ--KTGSLISIKHV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + D ++++   G +IR+ V++IR+  R T+GV + +  + + +  VE++ ++
Sbjct: 761 TNQDDLMIIKKSGIIIRISVSDIRVMGRDTQGVRLINLKEKDEIADVEKVSQT 813


>gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica]
          Length = 879

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/919 (39%), Positives = 521/919 (56%), Gaps = 78/919 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + S  +  + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G 
Sbjct: 1   MGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGN 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  
Sbjct: 61  DWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K AH LL DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV+DGC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGR
Sbjct: 181 MATNIPPHNLSEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAIINGRRGIQEAYRTGR 240

Query: 246 GSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           G I IR  + IE      RE I+V EIPYQVNKA ++EKIAELV+EKRI  I+ LRDESD
Sbjct: 241 GKIYIRARAEIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  
Sbjct: 301 KDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDIISAFVCH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EVV RRT + L KAR+RAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ + W  
Sbjct: 361 RREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWEL 420

Query: 425 SDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            ++  +++   D +             +G  YL+E Q +AIL+LRL +LTGL  + + +E
Sbjct: 421 GNVASMLERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L   I E L IL S  RL+ +I++ELL++K + +  RRT + E   D+  ED I +E
Sbjct: 481 YRELLTLIGELLFILESPERLMEVIREELLAIKAQYNDARRTELTENTADINIEDLINQE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D+VVT+SH GYVK  PLS Y AQRRGGKG+S   +                         
Sbjct: 541 DVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARI------------------------- 575

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
                            + +  I  L +                       +  A++   
Sbjct: 576 -----------------KEEDFIEKLLVANTHDTILCFSSRGRLYWMKVYQLPEASR--- 615

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVET----CTQENDILLTTKLGQCVRFPISA 712
                            I +    +DE ++             + + T  G   +  +  
Sbjct: 616 ----------SARGRPIINLLPLEQDERITAILPVREYEDGLYVFMATASGTVKKTALQD 665

Query: 713 I-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             R      S G+  ++L  GD++I    V   D   +  +   +    +    +     
Sbjct: 666 FSRPR----SAGILAVNLNDGDELIG---VDLTDGSNEVMLFSAEGKVVRFEEDAVRAMG 718

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T+            +     +   E  ILTV+E G+GKRT+  ++ I +R+ +G+ +  
Sbjct: 719 RTATGVRGIKLNGKDKVVSLIIPRGEGEILTVTENGYGKRTAENEYPIKSRATQGVISIK 778

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           VS+ N  G +V    V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE+V
Sbjct: 779 VSERN--GNVVGAIQVEPTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEKV 836

Query: 892 VSVERIRESEIVDEAESTE 910
           V ++R+ E E  ++    E
Sbjct: 837 VGLQRVAEPEDDEDELVAE 855



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/426 (15%), Positives = 142/426 (33%), Gaps = 35/426 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL    +   +L      +  + E +  I+   N   ARR  +  +   
Sbjct: 473 EHEKLLDEYRELLTLIGELLFILESPERLMEVIREELLAIKAQYN--DARRTELTENTAD 530

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  LS+ + +       +       D I   L +   
Sbjct: 531 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTH 590

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +            + ++++       R T I+      +     
Sbjct: 591 DTILCFSSRGRLYWMKVYQLPEASRSARGRPIINLLPLEQDERITAILPVREYEDGL--- 647

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L  +   R  G     +   DE    DL        V+ FS
Sbjct: 648 ----YVFMATASGTVKKTALQDFSRPRSAGILAVNLNDGDELIGVDL--TDGSNEVMLFS 701

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V + +   +      A G   +  + LN  +++ +++             ++  T+
Sbjct: 702 AEGKVVRFEEDAVRAMGRTATG---VRGIKLNGKDKVVSLI------IPRGEGEILTVTE 752

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R   +++   +R+ +  + +   +     +        + I++ T  G  VR  +
Sbjct: 753 NGYGKRTAENEYPIKSRATQGVISIKVSERNGNVVGAIQVEPTDQIMMITDAGTLVRTRV 812

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +    GRN+ GV  I  A+ ++V+ +  V   + D DE +     +            
Sbjct: 813 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAEPEDDEDELVAEGGGLENNNTNSPDADS 871

Query: 771 EITSLK 776
              S  
Sbjct: 872 GRESAD 877


>gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus]
          Length = 878

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/843 (44%), Positives = 530/843 (62%), Gaps = 17/843 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFP  A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFADARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L  GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEDGERITAILPVDEFS---ADKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+  T  +DI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+ +  +               +      +      T       V    
Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +   ++ +++ G   RT   +     R+ +G+     ++     ++V + 
Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTAEDE---SVVGLQ 836

Query: 846 PVN 848
            ++
Sbjct: 837 RID 839



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 154/428 (35%), Gaps = 29/428 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R       A     + +  +
Sbjct: 469 EHEKILAEYKELLEEIAELMHILASTERLMEVIREELEAVRDG----FADARRTEITAAS 524

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            DI D+ +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 525 HDI-DMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATRMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   + E        D    +
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSAD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITTGSSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A+ + V+ +  +   +          +   A     + +     
Sbjct: 812 -SQVGRNTQGVTLIRTAEDESVVGLQRIDEVEEVELPEGEEAETTEANAEQQAPEAPAAD 870

Query: 774 SLKNDSSV 781
             +     
Sbjct: 871 DAEEGKEE 878


>gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
 gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14]
          Length = 887

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 388/861 (45%), Positives = 547/861 (63%), Gaps = 29/861 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E IVV EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YL+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMYILSSSERLMEVIREELELVKEQFNDERRTEITAASHDIDMEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E      + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYT---EDKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714
            +   +G IA+ L   D ++ V+    + DI+L +  G+ VRF  S            +R
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVR 722

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRGI LA+GD+VIS+ IV H D D             +       +     
Sbjct: 723 GM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQG 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           + +    E N       + +  ++F + ++  G   RT   +     R+ +G+     ++
Sbjct: 781 VVSIKVSERNGRVVGAVQAEDGDEF-MMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTTE 839

Query: 835 INEIGALVAVFPVND-NDQII 854
             +   +V +  +++  +++I
Sbjct: 840 GEK---VVGLQRIDEPEEELI 857



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 101/258 (39%), Gaps = 20/258 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL+ +   R  G     V +R+ D +  + +      ++ F
Sbjct: 639 YTEDKFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDVTDGDCDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARG--------KALINILSLNQGERITTIMPFPEDESSWN 644
           S+ G V +     +      A+G         A +  + L +G+++ +++         N
Sbjct: 697 SAFGKVVRFYESPVIDAEGNAKGGVRGMGRTAAGVRGIKLAEGDKVISLI------VPHN 750

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTK 701
           +  V+  T++G  +R +L+++   +R+ +  + +        ++        ++ ++ T 
Sbjct: 751 DGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGRVVGAVQAEDGDEFMMITN 810

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +S +    GRN+ GV  I   +G++V+ +  +   + +  E    ++  + +
Sbjct: 811 AGTLVRTRVSEV-SRVGRNTQGVTLIRTTEGEKVVGLQRIDEPEEELIEDAELVEGEAVE 869

Query: 762 RRLISGDTEEITSLKNDS 779
                             
Sbjct: 870 NTDQPATDTSSDDSTEQE 887


>gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I]
 gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707]
          Length = 860

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/896 (39%), Positives = 527/896 (58%), Gaps = 87/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    I  V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G  +N 
Sbjct: 2   EDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCAR  G+++GKYHPHG++++Y+ L R+AQ W++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PTRKCARAVGDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+  +TVDF+ N+DG F+EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E ++ C+A ID   +I +D LM+ ++ PDFPTG VI G  G+K A+ TGRG I
Sbjct: 182 MAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIRG + IE+     E+IV+ EIPYQV K+ M+ KIA+LV EK+I  I+D+ DES  +G 
Sbjct: 242 VIRGKADIEEY-HGHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++K+ A+A V+LN LY+Y+ L+S FSVN +AL   +P    L  ++  FV  R +V
Sbjct: 301 RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVHGRPRLLNLKDLIGHFVDHRHDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L KA++R H+L GL IAV ++DEV+RIIR S     A   LM+         
Sbjct: 361 VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAI+++RL +LT L  D +++E N L   I    
Sbjct: 412 -----------------AFNLSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLN 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
             LS  +  + +I++E   + D+    RR+ IV    D+  ED    EDMV+T+SHLGY+
Sbjct: 455 LFLSDINMRMELIQEECREIIDKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   RDEDFV  ++  + H +++ F++ G VY  +V+ +P 
Sbjct: 515 KRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           GS  ++G+ + N+L L++  R+T  +   +   D+   N  Y+VFAT+ G +++  L+ +
Sbjct: 575 GSKSSKGRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHY 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++G  A+ L   D+++SV       +I L  + G+CVRF    +R   GR + GVR
Sbjct: 635 ANPRKTGVRAINLRGDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVR 693

Query: 726 GISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           GI L     D+V+ M +                                           
Sbjct: 694 GIRLDDDPNDKVVGMVV------------------------------------------- 710

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    LK  ++ IL +SEKG+GKR+   D+RI+ R  KG++  +V+  ++ G L+ 
Sbjct: 711 -------HRLKNSDETILVISEKGYGKRSLIDDYRITKRGAKGVKTINVT--DKTGQLID 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
           +  V D+D I++++  G  IR+ + ++R+  RAT+GV +    K  + + S+  + 
Sbjct: 762 IRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVV 817



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/430 (13%), Positives = 147/430 (34%), Gaps = 25/430 (5%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + ++  N+ ++R   L      +    E+++        +       +  + + D+    
Sbjct: 438 KLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIDKYGDERRSEIVYASEDLNPED 497

Query: 432 DLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-- 485
              D+      S         LSE +T+    + +        D +    ++        
Sbjct: 498 FYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMML 557

Query: 486 -------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
                    L +            + + ++ D  +  R T  +       D++ +    +
Sbjct: 558 FTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRVTAFLRIKDLTTDKEFVNTHYL 617

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G +K+  L+ Y   R+ G     + +R +D V  + + + +  +   +  G  
Sbjct: 618 VFA-TEQGLIKKTLLAHYANPRKTG--VRAINLRGDDQVVSVALSNGNCEIFLANRNGRC 674

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +     +      A G   I  L  +  +++  ++         ++  ++  ++ G  +
Sbjct: 675 VRFNEQEVRPMGRTATGVRGI-RLDDDPNDKVVGMV---VHRLKNSDETILVISEKGYGK 730

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R+ + D+    R  K    ++  D+    + +     +++I++  K G  +R  +  +RV
Sbjct: 731 RSLIDDYRITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVAIRLSMEQVRV 790

Query: 716 FAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             GR + GV+ I L K  D++ S+  V+  + + +          ++      D +    
Sbjct: 791 M-GRATQGVKMIDLNKRSDEIASICNVVAEEEEPELLDEADLDDPSEFVPQEEDLQGSDP 849

Query: 775 LKNDSSVEGN 784
                  E  
Sbjct: 850 DDELEGSEDQ 859


>gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 855

 Score =  832 bits (2148), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/912 (38%), Positives = 522/912 (57%), Gaps = 102/912 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 2   RVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC+
Sbjct: 62  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  ++ D+ ++TVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 122 MMPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L EV  G    +++P+   + L++     I+GPDFPTGA+++GR GI+ AY TGRGSI +
Sbjct: 182 LREVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+    R+ +VVTE+P+Q N   + +KIA+LV++ ++  IAD+RDE S R G R
Sbjct: 242 RAVVAVEEIQ-GRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+
Sbjct: 301 LVVVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 361 VRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM----------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G + + E+Q  AILE++L RL  L    I  E + L  +I E  +
Sbjct: 410 ---------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKINEYNE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S ++   I+ +EL ++ D+    RR+++V    DM  ED I  ED+VVT+S  GYVK
Sbjct: 455 ILASPAKQRAIVSEELAAIVDKFGDDRRSQLVPFDGDMSIEDLIAEEDIVVTISRSGYVK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 515 RTKTDDYRSQKRGGKGVRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+ + N+L+    E+I  I+   + E+     Y++ ATK G V++  L D+    
Sbjct: 575 GRDARGQHVANLLAFQPDEKIAQILAIRDYEAV---PYLILATKGGLVKKTALKDYDSPR 631

Query: 670 RSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722
             G IA+ L        DE++  E  + E+D+LL +K  Q +RF  +   +R   GR + 
Sbjct: 632 SGGVIAINLREMPEGGDDELIGAELVSAEDDLLLISKKAQSIRFTATDDALRPM-GRATS 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+G+S  +GD+++SM +V                                         
Sbjct: 691 GVKGMSFREGDELLSMNVVRPGT------------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           F+ T ++ G+ KRT   ++R+  R G GI+A  + +  + G+LV
Sbjct: 714 ----------------FVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DRGSLV 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR---- 898
               V + D+I+ ++  G +IR  VNE+R   R T GV + +  K + VV + R      
Sbjct: 756 GALVVEETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEAGR 815

Query: 899 ESEIVDEAESTE 910
           E+E VD A+  +
Sbjct: 816 EAEEVDGADDVD 827


>gi|296392547|ref|YP_003657431.1| DNA gyrase subunit A [Segniliparus rotundus DSM 44985]
 gi|296179694|gb|ADG96600.1| DNA gyrase, A subunit [Segniliparus rotundus DSM 44985]
          Length = 826

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/917 (38%), Positives = 509/917 (55%), Gaps = 98/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +       I  V +  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTDPTDPT--PSRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+ AIYDAL RMAQ WSLR  L++GQGNFGS 
Sbjct: 59  QDQGFRPDRGYVKSARPVAEAMGNYHPHGDTAIYDALVRMAQPWSLRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  ++ D+ ++TVDF PNYDG  +EP VL AR PN+LVNG G
Sbjct: 119 GNDGAAAMRYTEARLAPLAMEMVRDIDEETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D           +    L+A+ EI++GPDFPT  +I+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVADAIFWALEHHDADEASTLEAVKEIVKGPDFPTAGLIVGTDG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           + +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN   M+  IAE VR+ +I  I
Sbjct: 239 VHDAYTTGRGSIRMRGVVEVEEDSQGRAILVITELPYQVNPDNMITSIAEQVRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+A+    P    L 
Sbjct: 299 SAIDDETSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++A + EV+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 359 QILRLYIAHQIEVIVRRTQYRLRKAEERAHILRGLVKALDALDEVIALIRASQTVDIARA 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 419 GLME--------------------------LLDVDEIQADAILAMQLRRLAALERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +  DIL+   R   I++ EL  + D     RRTRI+    ++ DED I R
Sbjct: 453 ELAEIEEAIADYQDILARPERQRAIVRDELKEIVDRHGDERRTRIIAAEGEVRDEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGATLKQDDIVAHFFVCSTHDWILFFTTR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+L   E+I  ++     E   ++ Y+V ATK G
Sbjct: 573 GRVYRIKAYELPETSRAARGQHVANLLALQTDEKIAQVIHLQTYE---DSPYLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
             +++KL++F      G IA+ L   DE++    C+ ++D+LL ++ GQ +RF  +   +
Sbjct: 630 LTKKSKLTEFDSNRSGGLIAVNLRDEDELVGAALCSSDDDLLLVSEHGQSIRFHANDEQL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+   + DQ+++M +V                                
Sbjct: 690 RPM-GRATSGVLGMRFNEDDQLLAMNVVRDG----------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 720 ------------------------AYLLVATSGGYAKRTALGEYPVQGRGGKGVLTVQYD 755

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + +  + +R+++
Sbjct: 756 RR--RGGLVGAVIVDDDTELYAITQGGGVIRTDARQVRRAGRQTKGVRLMNLGEGDRLIA 813

Query: 894 VERIRESEIVDEAESTE 910
           V R  E    D AE  E
Sbjct: 814 VARNDE----DSAEVAE 826


>gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
 gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406]
          Length = 869

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/897 (39%), Positives = 526/897 (58%), Gaps = 88/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ E  I  + I  EM+ +Y+ Y+++VI+ RA+PD+RDG KPVHRR+L+ M +MG  +++
Sbjct: 2   EDIEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQ 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K A+  GEV+ KYHPHG++A+Y  L R+AQ W+LR  L++GQGNFGSVDGD PAA R
Sbjct: 62  PTRKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF+ N+D + QEP VL  R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E +DGCVA ID    +++  LM  I+ PDFPTG  I G  G+K A+ TGRG I
Sbjct: 182 MAPHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIYGYAGVKEAFETGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQG 307
           V+R  + IE  S  RE I+VTEIPYQVNKA ++  IA+LV E+RI  I+++ DES  + G
Sbjct: 242 VLRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A+A V+LN L++ T LQS F+VN +AL   +P    L  ++  FV  R +
Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR+ + L KAR+RAH+L GL IAV N+DEV+ IIR S N + A+  L +R       
Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q RAI+++RL  LTGL  D +R E + L   I+  
Sbjct: 415 -------------------FELSELQARAIVDMRLRALTGLESDKLRAEFDELMKTIQYL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             +L+  + L+ ++K ELL VK++   PRRT IV    +   ED    ++M++T+SHLGY
Sbjct: 456 EGLLADDNLLMQVVKDELLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR PL  +R+Q RGG G  G   R+EDF+  ++  S H ++L F++ G  +   V+++P
Sbjct: 516 IKRTPLRDFRSQARGGVGSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPF---PEDESSWNNLYVVFATKHGNVRRNKLSD 664
            G+   +G+A+ NIL++   +RIT  +      +D     + Y+VFAT  G +++  L  
Sbjct: 576 EGAKSTKGRAIQNILNIEADDRITACIRIKKLQKDPEFVASHYLVFATLQGMIKKTPLEA 635

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +      G  A+KL+  D ++SV     + +ILL  K G+ +RFP S +R   GR + GV
Sbjct: 636 YSNPRSKGVFAIKLNEGDSVVSVRLTNGKTEILLANKGGRAIRFPESKVRSM-GRVTTGV 694

Query: 725 RGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           RG+ L +G  D ++ M  +   +                                     
Sbjct: 695 RGMILDEGGEDAIVGMVALKDPEK------------------------------------ 718

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + IL VSE G+GKRT+   +RI+NR GKG++   +++  + G+LV
Sbjct: 719 ---------------ETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITE--KTGSLV 761

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
               V D   +++++  G  IR+P++ I +  RAT+GV + + +   + + SV  + 
Sbjct: 762 DFRSVTDELDLMIINRSGVAIRMPMSSINVIGRATQGVKLINLSSRGDEIASVCIVA 818



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/323 (15%), Positives = 118/323 (36%), Gaps = 28/323 (8%)

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV---VFATKHG 655
            +  +      +       L  +  L     +  I          N   +       +H 
Sbjct: 302 MRIVIEVKRDANASVVLNHLFKLTPLQSYFNVNNIALVKGRPCLLNLKQLIGEFVDHRHD 361

Query: 656 NVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
            VRR  + D  +      I     + +D+ DE++ +   ++        +     RF +S
Sbjct: 362 VVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQ---EAQERLRERFELS 418

Query: 712 AIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLI 765
            ++      +  +  + L      + D++ +    ++      +  +     +    +  
Sbjct: 419 ELQ------ARAIVDMRLRALTGLESDKLRAEFDELMKTIQYLEGLLADDNLLMQVVKDE 472

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             + +E       + +  +  E   ++    ++ I+T+S  G+ KRT   DFR   R G 
Sbjct: 473 LLEVKEKFGDPRRTEIVFSSEEFNPEDFYADDEMIITISHLGYIKRTPLRDFRSQARGGV 532

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVI 882
           G + +   + + I  + +    + +  ++L + KG    +PV +I   +++TKG     I
Sbjct: 533 GSKGSTTREEDFIEYIYSA---SMHATLLLFTTKGRCFWLPVYKIPEGAKSTKGRAIQNI 589

Query: 883 FSTAKDERVVSVERIRESEIVDE 905
            +   D+R+ +  RI++ +   E
Sbjct: 590 LNIEADDRITACIRIKKLQKDPE 612



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 13/280 (4%)

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             R T  +      +D + +    +V   +  G +K+ PL  Y   R  G     + + +
Sbjct: 595 DDRITACIRIKKLQKDPEFVASHYLVFA-TLQGMIKKTPLEAYSNPRSKG--VFAIKLNE 651

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D V  + + +  T +L  +  G   +      P    ++ G+    +  +   E     
Sbjct: 652 GDSVVSVRLTNGKTEILLANKGGRAIR-----FPESKVRSMGRVTTGVRGMILDEGGEDA 706

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRD-EILSVETC 690
           +             ++  ++ G  +R  L  +        G   M++  +   ++   + 
Sbjct: 707 IVGMVALKDPEKETILVVSECGYGKRTTLDSYRITNRGGKGVKTMQITEKTGSLVDFRSV 766

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYD 749
           T E D+++  + G  +R P+S+I V  GR + GV+ I+L+  GD++ S+ IV   +A+ +
Sbjct: 767 TDELDLMIINRSGVAIRMPMSSINVI-GRATQGVKLINLSSRGDEIASVCIVASEEAEAE 825

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +        +  L S           D   E     E 
Sbjct: 826 KALLKEGASDEEVNLTSEIDSNDYEEIEDDLQEQQSKTEE 865


>gi|78184300|ref|YP_376735.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
 gi|78168594|gb|ABB25691.1| DNA gyrase subunit A [Synechococcus sp. CC9902]
          Length = 886

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/918 (38%), Positives = 540/918 (58%), Gaps = 66/918 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        + ++ I    + +EM  SY+ YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADSVGPGGGGPGDSDERIIQTDLRNEMSRSYMEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RL+      LL+D+  +TVD+  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLRALTTDSLLEDIEAETVDYADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG +A+I+NP+I    L+ +I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLSELIDGLMALINNPEISEQELITLIPGPDFPTGGQILGRAG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y +GRGS+ +RGV+ +E        DR+ +++T +PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLSGRGSVTMRGVAEVETIEAPGRPDRDAVIITALPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRIETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +L  R                            LS VQ  AIL+++L RLT L  D 
Sbjct: 421 ARTQLQDRH--------------------------GLSAVQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+LG+I++EL+ +++    PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVLGLIQEELVQLRERHSVPRRTEILDLAGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++   E     ++  ++  T
Sbjct: 575 SDRGVAYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLAVSEFN---DDTDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +K G  + F ++ 
Sbjct: 632 QGGFIKRTRLSAFSNIRSNGLIAIGLEDGDALTWVRLSIPGDSVLIGSKAGMTIHFRLAD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L KGD ++SM ++    AD                       
Sbjct: 692 GELRPL-GRTARGVRSMNLRKGDSLVSMDVLPAELAD----------------------- 727

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
           +I +  +D+    +  +     +  +  ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 728 QIAASADDAGDGDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 787

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 +   LV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 788 KF--RTDADELVGLRVLGAGEELLLVSEKGVIVRTGADAIPQQSRAATGVRLQRLDKGDR 845

Query: 891 VVSVERI-RESEIVDEAE 907
           +  V  +  E+E  D+ +
Sbjct: 846 LADVVLVPPEAETDDDGD 863



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 29/268 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G++KR  LS +   R  G     + + D D +T + +     SVL  
Sbjct: 621 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEDGDALTWVRLSIPGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERIT------------------- 631
           S  G    ++     L      ARG   +N+   +    +                    
Sbjct: 679 SKAGMTIHFRLADGELRPLGRTARGVRSMNLRKGDSLVSMDVLPAELADQIAASADDAGD 738

Query: 632 --TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILS 686
                   E   +    +V+ A+  G  +R  ++ F    R+G    AMK  +  DE++ 
Sbjct: 739 GDDAGDVAETAVAAEGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADELVG 798

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +       ++LL ++ G  VR    AI     R + GVR   L KGD++  + +V     
Sbjct: 799 LRVLGAGEELLLVSEKGVIVRTGADAI-PQQSRAATGVRLQRLDKGDRLADVVLVPPEAE 857

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITS 774
             D+       ++ Q +     +E    
Sbjct: 858 TDDDGDQANGDVADQPQASGESSEPSAE 885


>gi|87302143|ref|ZP_01084968.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
 gi|87283068|gb|EAQ75024.1| DNA gyrase subunit A [Synechococcus sp. WH 5701]
          Length = 866

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/918 (38%), Positives = 536/918 (58%), Gaps = 68/918 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       E +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MADPTGP--GESDGRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSV
Sbjct: 59  YELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP V+ AR P++L+NG 
Sbjct: 119 DNDPPAAMRYTESRLQALTTDSLLEDIEAETVDYIDNFDGSQQEPTVMPARVPHLLLNGS 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL E+++G +A+I +P++D  AL+ +I GPDFPTG  ILGR GI+ 
Sbjct: 179 SGIAVGMATNIPPHNLTELINGLLALIADPELDDRALLALIPGPDFPTGGQILGRRGIRE 238

Query: 240 AYATGRGSIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y TGRGS+ +RGV+ IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K++  
Sbjct: 239 TYTTGRGSVTMRGVASIETLEIPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKLDG 298

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDESDR G R+VIEL+R A   V+LN L++ T LQS FS +M+AL   +P   TL 
Sbjct: 299 ISDIRDESDRDGMRIVIELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNSEPVLLTLR 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR E + RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  TAR 
Sbjct: 359 RMLQVFLEFRIETIERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDAATARL 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L +R                            LSE+Q+ AIL+++L RLT L  D IR 
Sbjct: 419 QLQERH--------------------------GLSEIQSDAILQMQLRRLTALEADKIRL 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I +  DIL  R R+LG+I+ EL+ +++   + RRT I++    +ED D I  
Sbjct: 453 EHEDLVTKIADYKDILGRRERVLGLIEAELIQLRERYPSERRTEILDLEGGLEDIDLIAN 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L FS  
Sbjct: 513 ERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVRLFISCNDHDTLLLFSDR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY    +R+P+GS  A+G  ++ +L + + E+IT+++     +   +++ ++  T  G
Sbjct: 573 GVVYAVPAYRVPVGSRGAKGTPVVQLLPIPREEQITSLVAVSAFD---DDVQLLMLTSGG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            ++R +LS F  I  +G IA+ L+  D +         + +L+ +  G  + F ++   +
Sbjct: 630 YIKRTRLSAFANIRSNGLIAISLEDGDALRWARLALPGDSVLIGSLKGMTIHFRLTDGEL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GVR ++L  GD+++SM ++    AD        ++                
Sbjct: 690 RPL-GRTARGVRAMALRPGDELVSMDVLPAELADQVASSSASENEEEDAPEAGE------ 742

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  S  G GKR     FR+  R+G G+RA    
Sbjct: 743 --------------------SSDGPWVLVASASGLGKRVPVTQFRLQRRAGLGLRAIKF- 781

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +   LV +  +   ++++LVS++G ++R+  + I   SRA  GV +      +R+  
Sbjct: 782 -RRDGDVLVGLTVMGPGEELLLVSERGVIVRMQADAIPQQSRAATGVRLQKLDSGDRLSE 840

Query: 894 VERIRE-SEIVDEAESTE 910
           V  +    +  D A++ E
Sbjct: 841 VVLVPPAPDEEDLADTAE 858


>gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779]
          Length = 827

 Score =  831 bits (2147), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/898 (39%), Positives = 535/898 (59%), Gaps = 91/898 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V+I DEM+ +YL YA++VI+ RA+PD RDGLKPV RRIL+ M + G+  N +Y KCA
Sbjct: 6   VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GEV+ KYHPHG+A++YDAL R+AQ W++R  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 66  GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           ++ A  LL D+ +DTV+F PN+DG +QEP+VL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ DG   ++DNPD  ++ L++ I GPDFPTG  ILG  GI +AY++GRG I+IR  +H
Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGTEGIISAYSSGRGRILIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA ++E+IAELV++KRI  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN L++YTS+Q+ F  NM+AL     +P   +L   L+ ++  R+ V+ RRT
Sbjct: 306 QDAQPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA+ RAH+L GL IA+  LDEV+  IR S   ETAR  LM+              
Sbjct: 366 EHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMK-------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q++AILE++L RL GL R  I +E   +   I +  DILS 
Sbjct: 412 ------------NFKLSELQSQAILEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSK 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  IIK ++  +K++    RR+RI+ +   D+  ED I   +++VTV+  GY+K++P
Sbjct: 460 PERVFKIIKDDVAELKEKYGDVRRSRIIADATGDISTEDLIPDMNVLVTVTDRGYIKKLP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR Q RGG+G  G+  +++D V  L + +T   +LFF++ G VY+ KV  +P  S  
Sbjct: 520 GDTYRVQNRGGRGIKGMTTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE +T+++  P+ +   +  Y+V  T  G ++R KLS++  +  +G
Sbjct: 580 AKGLPLVNLISLEPGELVTSLIAVPDFD---DGEYLVMTTVKGRIKRTKLSEYSSVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD+ DE+  V+T   + DIL+TT+ GQ +RF  + +R   GR + GV GI ++  
Sbjct: 637 LIAIGLDTGDELRWVKTSNGDEDILMTTQHGQTIRFSQAEVRPM-GRPASGVIGIKMSAK 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           DQV+ M +V                                                   
Sbjct: 696 DQVVGMDLVRP------------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  +L ++  G GKRT   D+ +  R+ +G+    +   +    + A   + D+D 
Sbjct: 707 ----DSQLLVITSHGMGKRTDLEDYPVKGRATQGVITMRLKPGDI---IAAALVLTDSDI 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +  ++  G ++R   ++I    R T+GV + +  K + V +V    E  + D+++ ++
Sbjct: 760 VTTITRNGVVMRTRADKISKYGRTTQGVTVINLDKKDLVAAVS--AEPPVDDKSDDSD 815


>gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
 gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A
 gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)]
          Length = 857

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/918 (38%), Positives = 517/918 (56%), Gaps = 98/918 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
                +     +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G
Sbjct: 2   TTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
               + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GNFGS   DP
Sbjct: 62  YRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDP 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+NG  GIAV
Sbjct: 122 AAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNA 240
           GMATNIP HNL EV  G    ++N +   + L++     I+GPDFPTGA+++GR GI+ A
Sbjct: 182 GMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEA 241

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+R
Sbjct: 242 YRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVR 300

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE S R G R+VI LKR A A V+LN LY++T LQS F  NM+AL    P   +L   ++
Sbjct: 301 DETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIR 360

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM 
Sbjct: 361 HWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM- 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                      + + E+Q  AILE++L RL  L R  I  E + 
Sbjct: 420 -------------------------DLLEIDEIQANAILEMQLRRLAALERQKIVREHDE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+V
Sbjct: 455 LQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIV 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY
Sbjct: 515 VTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVY 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + LP     ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++
Sbjct: 575 RAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKK 631

Query: 660 NKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
             L D+      G IA+ L        DE++  E  + E+D+LL +K  Q +RF  S   
Sbjct: 632 TPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDT 691

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+S  +GD+++SM +V                               
Sbjct: 692 LRPM-GRATSGVKGMSFREGDELLSMNVVR------------------------------ 720

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                     F+ T ++ G+ KRTS  ++R+  R G GI+A  +
Sbjct: 721 -----------------------AGTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKI 757

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            +  + G+LV    V ++D+I+ ++  G +IR  VN +R   R T GV + +  K + VV
Sbjct: 758 VE--DRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKRDAVV 815

Query: 893 SVERIRESEIVDEAESTE 910
            + R  E+    E    +
Sbjct: 816 GIARNAEAGREAEEVDGD 833



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +  + +    +L           +L  S
Sbjct: 618 PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLIS 677

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +          P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 678 KKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVRA------GTFVFTATD 730

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 731 GGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRV 790

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR+++GV+ I+L K D V+ +A    A  + +E    +          +  T+
Sbjct: 791 NGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTD 849

Query: 771 EITSLKND 778
           E  +   +
Sbjct: 850 EGEAPSAE 857


>gi|124022624|ref|YP_001016931.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9303]
 gi|123962910|gb|ABM77666.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 875

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/919 (38%), Positives = 535/919 (58%), Gaps = 71/919 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  SD    E +  I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPSDGGPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP+VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP++    LM +I GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVANIETIEHPGRPDRDAVIITELPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR + V RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  T
Sbjct: 361 TLRKMLQVFLDFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L +                             L+E+Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQEHH--------------------------GLTEIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I    DIL  R R+  +I+ EL  ++++   PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIANYKDILGRRERVFALIEDELAKLREKHCLPRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++     +   ++ +++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVISFD---DDTHLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-- 710
           K G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ ++ G  + F +  
Sbjct: 632 KGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCD 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L  GD ++SM ++    AD   +                   
Sbjct: 692 EELRPL-GRTARGVRAMNLRGGDSLVSMDVLPVELADQVAK------------------- 731

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                    S+E +  +     +     ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 732 ---------SLEDDPDDSVETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAI 782

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 E   LV +  +   ++++LVS++G ++R   ++I   SRA  GV +      +R
Sbjct: 783 KF--RREGDELVGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDR 840

Query: 891 VVSVERI-RESEIVDEAES 908
           +  V  +  +SE  D+ + 
Sbjct: 841 LSEVVLVPPDSEDQDQPDD 859


>gi|33863395|ref|NP_894955.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9313]
 gi|33640844|emb|CAE21299.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 875

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/919 (38%), Positives = 536/919 (58%), Gaps = 71/919 (7%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +  SD    E +  I    +  EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADPLGPSDGGPGESDDRIIQTDLRIEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+++ LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMQMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVD+  N+DGS QEP+VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQSLTTDSLLEDIEAETVDYADNFDGSQQEPMVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E++DG  A+I NP++    LM +I GPDFPTG  ILGR+G
Sbjct: 181 NGSSGIAVGMATNIPPHNLSELIDGLQALISNPELSDSELMTLIPGPDFPTGGQILGRSG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSG----DREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y TGRGS+ +RGV++IE        DR+ +++TE+PYQ NKAA++E+IAE+V +K+
Sbjct: 241 IRETYLTGRGSVTMRGVANIETIEHPGRADRDAVIITELPYQTNKAALIERIAEMVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T LQS FS +M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTPLQSNFSAHMLALVNGEPVLL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR + V RRT+Y L KA +R H+L+GL +A+  LD ++ +IR + +  T
Sbjct: 361 TLRKMLQVFLDFRVDTVERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAASDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L +                             L+E+Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQEHH--------------------------GLTEIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I    DIL  R R+ G+I+ EL  ++++   PRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIANYKDILGRRERVFGLIEDELTKLREKHCLPRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV ++  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLLTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++     +   ++ +++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVISFD---DDTHLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-- 710
           K G ++R  LS F +I  +G IA+ L+  D +  V      + +L+ ++ G  + F +  
Sbjct: 632 KGGFIKRTSLSAFSKIRSNGLIAIGLEEGDALTWVRLAVPGDSVLIASRAGMTIHFRLCD 691

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L  GD ++SM ++    AD   +                   
Sbjct: 692 EELRPL-GRTARGVRAMNLRGGDSLVSMDVLPVELADQVAK------------------- 731

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                    S+E +  E     +     ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 732 ---------SLEDDQDESGETVVVSDGPWVLVASASGLGKRVPVNQFRLQKRAGMGLRAI 782

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                 E   LV +  +   ++++LVS++G ++R   ++I   SRA  GV +      +R
Sbjct: 783 KF--RREGDELVGLRVLGYGEELLLVSERGVIVRTSADKIPQQSRAATGVRLQRLDAGDR 840

Query: 891 VVSVERI-RESEIVDEAES 908
           +  V  +  +SE  D+ + 
Sbjct: 841 LSEVVLVPPDSEDQDQPDD 859



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 77/235 (32%), Gaps = 19/235 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISMAIVLHAD 745
               E  ++L T+ G   R P+S       R + G  G      + V   IS        
Sbjct: 514 LIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEEAVKLFISCNDHDTLL 572

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              D  + Y        +                  E  I+          +  +L +++
Sbjct: 573 LFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLLSVISFDDDTHLLMLTK 632

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            GF KRTS   F        G+ A  + +     AL  V      D +++ S  G  I  
Sbjct: 633 GGFIKRTSLSAFSKIR--SNGLIAIGLEEG---DALTWVRLAVPGDSVLIASRAGMTIHF 687

Query: 866 PV--NEIRIASRATKGVVIFSTAKDERVVSVER--------IRESEIVDEAESTE 910
            +   E+R   R  +GV   +    + +VS++         + +S   D+ ES E
Sbjct: 688 RLCDEELRPLGRTARGVRAMNLRGGDSLVSMDVLPVELADQVAKSLEDDQDESGE 742


>gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Streptomyces coelicolor
 gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)]
 gi|1093585|prf||2104262E DNA gyrase
          Length = 864

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/926 (38%), Positives = 519/926 (56%), Gaps = 102/926 (11%)

Query: 1   MTEHIISSDEEEEK----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+        E       +  V +  EMQ SYL YA++VI+ RA+P +RDGLKPVHRR+
Sbjct: 1   MTDENTPVTTPEGDALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M   G    + + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  GN
Sbjct: 61  LYAMYDGGYRPERGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  QEP VL AR+PN+L+
Sbjct: 121 FGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLI 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV  G    ++N +   + L++     I+GPDFPTGA+++
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +
Sbjct: 241 GRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGK 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS F  NM+AL    P  
Sbjct: 300 VGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E
Sbjct: 360 LSLDAFIRHWVNHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVE 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM                            + + E+Q  AILE++L RL  L R 
Sbjct: 420 IARGGLM--------------------------DLLEIDEIQANAILEMQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  E + L  +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED
Sbjct: 454 KIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRKTKLIPYEGDMSIED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  ED+VVTV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LF
Sbjct: 514 LIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP     ARG+ + N+L+    E I  I    + E+     Y+V A
Sbjct: 574 FTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAIRDYEAV---PYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCV 706
           TK G V++  L D+      G IA+ L        DE++  E  + E+D+LL +K  Q +
Sbjct: 631 TKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RF  S   +R   GR + GV+G+S  +GD+++SM +V                       
Sbjct: 691 RFTASDDTLRPM-GRATSGVKGMSFREGDELLSMNVVR---------------------- 727

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                             F+ T ++ G+ KRTS  ++R+  R G
Sbjct: 728 -------------------------------AGTFVFTATDGGYAKRTSVDEYRVQGRGG 756

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+A  + +  + G+LV    V ++D+I+ ++  G +IR  VN +R   R T GV + +
Sbjct: 757 LGIKAAKIVE--DRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDTMGVQLIN 814

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
             K + VV + R  E+    E    +
Sbjct: 815 LGKRDAVVGIARNAEAGREAEEVDGD 840



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +  + +    +L           +L  S
Sbjct: 625 PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLIS 684

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +          P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 685 KKAQSIRFTASD-DTLRPMGRATSGVKGMSFREGDELLSMNVVRA------GTFVFTATD 737

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 738 GGYAKRTSVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRV 797

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR+++GV+ I+L K D V+ +A    A  + +E    +          +  T+
Sbjct: 798 NGVRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDVAVDETAEGAATTGTD 856

Query: 771 EITSLKND 778
           E  +   +
Sbjct: 857 EGEAPSAE 864


>gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4]
 gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4]
          Length = 946

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/877 (42%), Positives = 533/877 (60%), Gaps = 46/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 32  SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 91

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 92  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 151

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 152 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 211

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R +
Sbjct: 212 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 271

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 272 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 331

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 332 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 391

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 392 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 451

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 452 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 511

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 512 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 571

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 572 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 631

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 632 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 688

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 689 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSVLDENGNPVL 748

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRGI L +G +V+S+ +     A            + 
Sbjct: 749 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTE 807

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                S        +    S          Q     E  I+ +S+KG   RT +    I 
Sbjct: 808 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 865

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853
            R+ +G+     +   +   +V +  ++    D D++
Sbjct: 866 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 899



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 154/419 (36%), Gaps = 31/419 (7%)

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLIDDS 437
           +  +    + GL   + + + ++ +I+       A     +R+   ++  D+ ++ + + 
Sbjct: 502 EYEELLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINE 561

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              + +   +  ++ Q  +  + +     G     +++E     + +    D +   S  
Sbjct: 562 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 621

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTV-SHLGYVK 549
             +   ++  +     T R   IV  L   + E            ED  + + +  G VK
Sbjct: 622 GKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVK 681

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL--- 606
           +  L+ Y   R  G     V ++D D +  + I +    ++ FS+ G V + K       
Sbjct: 682 KTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVSV 739

Query: 607 ----------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                       G+PQ   K    +    +  +G ++              +  ++  T+
Sbjct: 740 LDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTE 799

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R +LS++   +R+ K  + +   +     +        ++I+L +  G  VR P 
Sbjct: 800 NGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPA 859

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + +    GRN+ GV  I  A  ++V+ +  +     D DE       M     +  G++
Sbjct: 860 NGV-SIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDEDEVELDENGMPIVPVVAEGNS 917


>gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
 gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2]
          Length = 922

 Score =  831 bits (2146), Expect = 0.0,   Method: Composition-based stats.
 Identities = 366/873 (41%), Positives = 530/873 (60%), Gaps = 85/873 (9%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 85  EMRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 144

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ A+YD + R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL + A  LL
Sbjct: 145 KYHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELL 204

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EP VL AR+PN+LVNG  GIAVGMATNIP HNL E V+   
Sbjct: 205 RDLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAAC 264

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           A+ID+P+I  D LM+II GPDFPTGAVI+G  GI  AY TGRGSI +R  +HIE T   R
Sbjct: 265 ALIDDPEITTDELMQIIPGPDFPTGAVIMGTEGIHKAYETGRGSITVRAKAHIESTKTGR 324

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPYQVNK ++ EKIA+LV EKR+  I+D+RDES  +G R+VIELK+G    V+
Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELKKGVIPQVV 384

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY++TSLQS F +N +AL    P+  +L  +L  ++A + +VV RRT++ L KAR R
Sbjct: 385 LNNLYKFTSLQSTFGINNLALVEGAPQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKARAR 444

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  IA+ ++DEV+ IIR S     A   L +R                       
Sbjct: 445 AHILEGYLIALDHIDEVISIIRSSETDAEASARLTER----------------------- 481

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 ++ QT AILE++L RLTGL R  I  EL++L   I+   D+L+ + ++L +IK+
Sbjct: 482 ---FGFTDRQTAAILEMKLRRLTGLERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKE 538

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           E+  +  +   PRRT I E   +++ ED I  EDMVVT++H GYVKR+P++ YR+Q+RGG
Sbjct: 539 EMREIARKFGDPRRTEIREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGG 598

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG SGV ++++D + ++FI STH  VLFFS+ G VY+ KV  LP+GS QARG A++N+L 
Sbjct: 599 KGVSGVNLKEDDVIAEMFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLP 658

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
             +GE+I +++   +     ++ +++FAT+ G V++  +S + +  R G IA+ L + D 
Sbjct: 659 FEEGEKIASVISTRDFP---DDEFLMFATRSGMVKKTVMSAYDRSRRDGIIAINLKTDDA 715

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +L V     ++ I++ T  G+ + F    +R   GR++ GVRGI L    +V+ M     
Sbjct: 716 LLDVRRVRPQDKIIMATTEGKAIMFEQEQVRA-TGRDTSGVRGIDLRGSARVLGM----- 769

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                           E+   +  +  +
Sbjct: 770 ------------------------------------------------EITNGQGDLFVI 781

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +E G+GKRT   D+   +R G+G+    +++    G L A+  V    ++ +++   T+I
Sbjct: 782 TENGYGKRTPVRDYPTQHRGGQGVYTIQMTQR--KGMLAAMKTVGPQHELFIITKGATVI 839

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           RV   EI    RAT+GV + + A  + V++V R
Sbjct: 840 RVKTGEISQTGRATQGVKMMNVADGDLVIAVAR 872



 Score = 62.5 bits (150), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/433 (13%), Positives = 140/433 (32%), Gaps = 41/433 (9%)

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+  R        L      +  V++            RE+ ++  +    +      +
Sbjct: 511 ELDALRQAIEYYEDLLAHKEKVLAVIK---------EEMREIARKFGDPRRTEIREAEKE 561

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                + +D  M ++   T  +  + +A      R        +L  +       ++S  
Sbjct: 562 LDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDDVIAEMFIASTH 621

Query: 496 RLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDED-----------CIVREDMVV 540
             +          + ++       R+ R    +  +  E+               ++ ++
Sbjct: 622 EFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIASVISTRDFPDDEFLM 681

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VK+  +S Y   RR G     + ++ +D + D+  V     ++  ++ G   K
Sbjct: 682 FATRSGMVKKTVMSAYDRSRRDG--IIAINLKTDDALLDVRRVRPQDKIIMATTEG---K 736

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             ++         R  + +  + L    R          E +     +   T++G  +R 
Sbjct: 737 AIMFEQEQVRATGRDTSGVRGIDLRGSAR------VLGMEITNGQGDLFVITENGYGKRT 790

Query: 661 KLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            + D+   +R       I M       + +++T   ++++ + TK    +R     I   
Sbjct: 791 PVRDYPTQHRGGQGVYTIQMTQRKG-MLAAMKTVGPQHELFIITKGATVIRVKTGEI-SQ 848

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV+ +++A GD VI++A +  A       +      + +    S   E      
Sbjct: 849 TGRATQGVKMMNVADGDLVIAVARMTAAKRRPKPSMAAEGQEALEIPSGSSADEVECVDI 908

Query: 777 NDSSVEGNISEER 789
             +        + 
Sbjct: 909 GGTDDVPEELLDE 921


>gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
 gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546]
          Length = 876

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/843 (45%), Positives = 531/843 (62%), Gaps = 17/843 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL SV++     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELESVREAFGDARRTEITAASHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK +INIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIINILPLEEGERITAILPVSEFS---PEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 ANVRSNGLIAVNLRDDDSLIGVDITDGQSDIMLFSKAGKVVRFSEDKVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ LA  DQV+S+ +  +               +      +      T       V    
Sbjct: 722 GMKLADDDQVVSLIVPSNEGDILTVTQNGYGKRTELAEYPTKG--RATQGVVSIKVSERN 779

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     +   ++ +++ G   RT   +     R+ +G+     +       +V + 
Sbjct: 780 GPVVGAVQVEEGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTADDE---NVVGLQ 836

Query: 846 PVN 848
            ++
Sbjct: 837 RID 839



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/426 (15%), Positives = 149/426 (34%), Gaps = 29/426 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL++  +  H+L      +  + E +  +R +                A
Sbjct: 469 EHEKILDEYKALLDEIAELMHILASTERLMEVIREELESVREAFGDA-----RRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     ++ E     + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
               D +   S      + ++  +     T R   I+  L   E E             E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVSEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I    + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFANVRSNG--LIAVNLRDDDSLIGVDITDGQSDIMLFSKAG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADDDQVVSLI------VPSNEGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L+++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELAEYPTKGRATQGVVSIKVSERNGPVVGAVQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A  + V+ +  +   +         +          + +  E  
Sbjct: 812 -SQVGRNTQGVTLIRTADDENVVGLQRIDEVEEVELAEGEEIADGEQATTSEAPEASEQQ 870

Query: 774 SLKNDS 779
               ++
Sbjct: 871 GDDTEA 876


>gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 854

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 433/847 (51%), Positives = 598/847 (70%), Gaps = 5/847 (0%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M + G +  K Y K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L LI+GQGNFGS
Sbjct: 1   MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDPPA+ RYTE RLQK +HFLL+D+ +DTVDFRPNYDG+  EPVVL A +PN+LVNG 
Sbjct: 61  IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            G+AVGMATNIP+HNLGE++D C+  +DNP++ LD L+E++ GPDFPTG  ILGR+GI++
Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTILGRSGIRS 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           A+ATGRGSIV++G +HIE    DR+ IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++
Sbjct: 181 AFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEI 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVI+L+R A A  ILNQ+   T L+S FSVN + LN  +P   +L  I++
Sbjct: 241 RDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIIE 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+ FR+EV++RRT++ L K R++AH+ +GL IAV ++DEV++IIR + +P  A REL+ 
Sbjct: 301 AFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLN 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           + W  S+  + I  +   S +   DG   L+E+Q +AIL+++L RLTGL +D +  EL+S
Sbjct: 361 KEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSS 420

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   IKE +  L S  +L+  IK  L  +K+    PR+T I E   D+E ED I +EDMV
Sbjct: 421 MINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVPRKTSIEESDTDIEAEDLIPQEDMV 480

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TV+  GY+KRV LS YR QRRGGKG+ G  +++ED +T+LF+ +THTSVLFFS++G VY
Sbjct: 481 ITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVY 540

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV++LP+  P ARG+AL+NI  L +GE IT IMP P +     N  +VF T +GN+RR
Sbjct: 541 RLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSEN--DENQNIVFTTAYGNIRR 598

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           N L+DF  I  +GKIA+KLD  D+++SV+ C + + + L+T+ G+ +RF +S +R F  R
Sbjct: 599 NSLADFHYIPSNGKIAIKLDEGDKLISVKVCNEIDHVFLSTRFGKSIRFVVSDVRQFKSR 658

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           NS GVRGI LAK D VISM I+       + +  Y+K   A+R L +     I S    +
Sbjct: 659 NSDGVRGIKLAKNDSVISMTILNGIGVATETKELYLKVPLAKR-LGTAINNSIDSKLEKT 717

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I  E   +L + E+FILT++E GFGKRTS+Y++RI+NR G GI     +  N  G
Sbjct: 718 LNDLGIDNELFLKLAVNEEFILTITENGFGKRTSAYEYRITNRGGVGITNILTTSRN--G 775

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +VA FPV   D I+L++DKG LIR+ VN+IRIA R+T+GV +F T   E+VVSV +I +
Sbjct: 776 NVVASFPVEQGDNIMLITDKGKLIRISVNDIRIAGRSTQGVTLFKTESREKVVSVAKIED 835

Query: 900 SEIVDEA 906
            +  +++
Sbjct: 836 PDSTEDS 842



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 18/232 (7%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D V   +  G   R  +S  R              R+ D V  + +    + +      G
Sbjct: 633 DHVFLSTRFGKSIRFVVSDVRQ----------FKSRNSDGVRGIKLAKNDSVISMTILNG 682

Query: 597 FVY----KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
                  KE   ++P+               L +      I      + + N  +++  T
Sbjct: 683 IGVATETKELYLKVPLAKRLGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 742

Query: 653 KHGNVRRNKLSDFIQINRSG---KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R    ++   NR G      +       +++     Q ++I+L T  G+ +R  
Sbjct: 743 ENGFGKRTSAYEYRITNRGGVGITNILTTSRNGNVVASFPVEQGDNIMLITDKGKLIRIS 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           ++ IR  AGR++ GV        ++V+S+A +   D+  D        +S+Q
Sbjct: 803 VNDIR-IAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDSISEVENSISSQ 853


>gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7]
 gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7]
          Length = 944

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/877 (42%), Positives = 533/877 (60%), Gaps = 46/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 32  SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 91

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 92  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 151

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 152 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 211

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R +
Sbjct: 212 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 271

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 272 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 331

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 332 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 391

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 392 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 451

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 452 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 511

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 512 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 571

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 572 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 631

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 632 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 688

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 689 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVL 748

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRGI L +G +V+S+ +     A            + 
Sbjct: 749 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTENGYGKRTE 807

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                S        +    S          Q     E  I+ +S+KG   RT +    I 
Sbjct: 808 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 865

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853
            R+ +G+     +   +   +V +  ++    D D++
Sbjct: 866 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 899



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 67/419 (15%), Positives = 154/419 (36%), Gaps = 31/419 (7%)

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-IDLIDDS 437
           +  +    + GL   + + + ++ +I+       A     +R+   ++  D+ ++ + + 
Sbjct: 502 EYEELLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINE 561

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              + +   +  ++ Q  +  + +     G     +++E     + +    D +   S  
Sbjct: 562 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 621

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTV-SHLGYVK 549
             +   ++  +     T R   IV  L   + E            ED  + + +  G VK
Sbjct: 622 GKMYWLKVYQLPLASRTSRGRPIVNLLPLSDGERITAILPVREYAEDKYIIMATSNGTVK 681

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL--- 606
           +  L+ Y   R  G     V ++D D +  + I +    ++ FS+ G V + K       
Sbjct: 682 KTALTAYSNPRANG--IIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAV 739

Query: 607 ----------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                       G+PQ   K    +    +  +G ++              +  ++  T+
Sbjct: 740 LDENGNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQKVVSLIVPKGDGAILTVTE 799

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R +LS++   +R+ K  + +   +     +        ++I+L +  G  VR P 
Sbjct: 800 NGYGKRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPA 859

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + +    GRN+ GV  I  A  ++V+ +  +     D DE       M     +  GD+
Sbjct: 860 NGV-SIIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDEDEVELDENGMPIVPVVAEGDS 917


>gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 825

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/898 (42%), Positives = 547/898 (60%), Gaps = 88/898 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V+I D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++GV     Y 
Sbjct: 9   NQDIQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 69  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTE 128

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +AA  +L D+ KDTVDF  NYD + QEP +L +R PN+L+NG  GIAVGMATNIP 
Sbjct: 129 ARMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPP 188

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H   E++D  V +IDNP   LD +++ + GPDFPTG +I G++GI+ AY +GRG I IR 
Sbjct: 189 HRTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIYGKSGIREAYESGRGRIKIRA 248

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEKT   ++ IV+ EIPYQVNKA ++E+IAEL +EK I  IA++RDESDR+G RVVI
Sbjct: 249 KTHIEKTKT-KDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVI 307

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T ++S F + ++A+   +P+ FTL+ +L  F++ R+ VV+RR
Sbjct: 308 ELKREAMSEIVLNHLFKSTPMESTFGIILLAIYNKEPKVFTLLELLDLFLSHRKSVVIRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL IA+ N+D +V +IR S +P+ A+  L+ +            
Sbjct: 368 TIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQ------------ 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AIL++RL RLTGL RD I NE  +L  EI+    IL 
Sbjct: 416 --------------FSLSEIQAQAILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILR 461

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S S L GIIK+ELL +K++  T R T I E    ++ ED I  E +VVT+SH GYVKRVP
Sbjct: 462 SESLLNGIIKEELLEIKEKFSTKRLTTIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVP 521

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  Y  Q RGGKG+      D+DF+   F+  TH ++LF +  G +Y  KV+++P  S  
Sbjct: 522 VRTYEKQNRGGKGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRT 581

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +     +N  + F TK+G ++R  LS+F  I   G
Sbjct: 582 AIGKAVVNLINLAPDEKIMATITTKDFN---SNKSLAFFTKNGIIKRTNLSEFKNIRSVG 638

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  D +++ +  + +  +IL+ T  G CVRF +  +R   GR + GV  I    
Sbjct: 639 VRAINLDENDALVTAKIISSDIKEILVVTYEGMCVRFGVDNVREI-GRVARGVTAIKFKM 697

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI   +V                                                 
Sbjct: 698 PKDYVIGATVV------------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + IL+VSEKG GKRT   ++RI+NR GKG+ A  ++   + G LV +  V++N
Sbjct: 709 ---ASENEEILSVSEKGIGKRTEVNEYRITNRGGKGVIAMKLTP--KTGKLVGIVNVDEN 763

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             +++++  G +IRV +  IR A RAT GV+I +   D++VVS+ R  + E  D+   
Sbjct: 764 MDLMVLTSSGKMIRVDMQSIRKAGRATSGVIIVNVD-DDKVVSIARCPKEEEQDDENE 820


>gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
 gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM
           14600]
          Length = 882

 Score =  830 bits (2145), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/914 (38%), Positives = 532/914 (58%), Gaps = 90/914 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I          I  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 4   MGDDIFD-QTVRSDTIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSM 62

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS+R +L++G GNFGS+
Sbjct: 63  IELNNTPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSI 122

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  ++ D+ KDTVDF PN+D + +EPVVL AR PN+LVNG  
Sbjct: 123 DGDGAAAMRYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTT 182

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EV+  CV +IDN        D+  ++ I++GPDFPTG +ILGR 
Sbjct: 183 GIAVGMATNIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIILGRA 242

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TGRG I +R V+ IE     + +I+V+EIPY VNKA M+EKIA++V++KR+  
Sbjct: 243 GIEEAYRTGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDG 302

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  LRDE+ R+G RVVIEL++  + +V+LN+LY+ T LQ  + V M+AL G +P   +L 
Sbjct: 303 ITALRDETSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLALVGNQPRIMSLK 362

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +E+VV RRT++ LNKA++R H+L GL  A+ N+DEV++IIR S +   A+ 
Sbjct: 363 EVLDHYILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKE 422

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM                          G   LSE Q +AI+++RL  LTGL R+ +  
Sbjct: 423 QLM--------------------------GRFALSEAQAQAIVDMRLRALTGLEREKLEA 456

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I     IL+   +LL ++K+E+  + D+    RRT+I     D+  ED I  
Sbjct: 457 EHRELMEKIAYFKGILADHKKLLTVVKEEMQEIADKYGDDRRTQIGFDDDDISAEDLIPV 516

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              ++T +  GY+KR+    +RAQ RGGKG  G+    +D++ +L    +H  + FF++ 
Sbjct: 517 THPIITFTKFGYIKRMSADNFRAQHRGGKGIKGMETIKDDYIVELIQTRSHNFLYFFTNK 576

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P  S  ARG A++N+L L   E IT+++P         + Y+  AT+ G
Sbjct: 577 GRVYRLKAYEIPEASRTARGTAIVNLLQLMPDETITSMIPVV--PGEDEDKYLFMATQRG 634

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++ +L ++  I +SG  A+ L   D ++ V+     ++++L T+ GQCVRF  S +R 
Sbjct: 635 IVKKTRLREYENIRKSGLAAINLRDEDRLIEVKLTDDTDEVMLFTRFGQCVRFHESDVR- 693

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+++GV GI+L+  D VI+M +    ++                             
Sbjct: 694 GTGRSTMGVIGINLSDQDCVIAMQLASQGES----------------------------- 724

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   ++ VS++G GK T + +F   +R GKG++   +++ 
Sbjct: 725 ------------------------LVLVSQRGLGKCTLTEEFPSHHRGGKGVKCYKITE- 759

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G LV V  V+ ++Q++L++  GT+IR+ + +  +  R T GV +     D+ V S+ 
Sbjct: 760 -KTGDLVGVKSVDKDNQLMLINRAGTIIRINIADTALLGRITSGVKLIDLKGDDEVASIS 818

Query: 896 RIRESEIVDEAEST 909
            ++  ++  E E T
Sbjct: 819 VVQREDLPLEDEDT 832


>gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41]
 gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231]
 gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002]
 gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19]
          Length = 854

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/903 (37%), Positives = 511/903 (56%), Gaps = 95/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ ++    E    I  + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDLL--GGEGFDRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS 
Sbjct: 59  YDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECRL   A  ++ D+ ++TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NPD D  A     M  ++GPDFPT   I+G  G
Sbjct: 179 GIAVGMATNIPPHNLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGSQG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE+    R+ IV+TE+PYQVN   M+  IAE VR+ ++  I
Sbjct: 239 INDAYTTGRGSIRMRGVTSIEEEGS-RQIIVITELPYQVNPDNMISNIAEQVRDGKLAGI 297

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT++ L +A  RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 358 QMLRYYVTHQIEVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARS 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + E+Q  AIL ++L RL  L R  I +
Sbjct: 418 GLI--------------------------DLLTIDEIQADAILAMQLRRLAALERQKIID 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + IEI +  DIL+   R   I++ EL  +  +    RRT+I+    D+ +ED I R
Sbjct: 452 ELAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     ERI  ++     E   +  Y+V AT  G
Sbjct: 572 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQLQSYE---DAPYLVLATAQG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++LSD+      G IA+ L   D+++    C+ ++++LL ++ GQ +RF      +
Sbjct: 629 RVKKSRLSDYESNRSGGLIAINLGEEDKLIGAALCSNDDELLLVSEEGQSIRFSADDDQL 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ+++M +V                                
Sbjct: 689 RPM-GRATAGVKGMRFRGDDQLLAMTVVR------------------------------- 716

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + ++L  +  G+GKRTS  ++    R G G+     +
Sbjct: 717 ----------------------SDAYLLVATSGGYGKRTSLEEYSQQGRGGLGVVTFKYT 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+A   V+++DQI  ++  G +IR  VN+IR +SRAT GV + +      +++
Sbjct: 755 P--KRGKLIAAVVVDEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGVELLA 812

Query: 894 VER 896
           ++R
Sbjct: 813 IDR 815



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 76/169 (44%), Gaps = 8/169 (4%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +A +    ADY + +   +   A  R    +       +  + +     +   ++L  +E
Sbjct: 453 LAEIEIEIADYKDILAKPERQRAIVRDELKEIVTKYGDERRTQIIAATGDVTEEDLIARE 512

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856
             ++T++  G+ KRT    ++   R GKG+R  ++    +   +V  F V + +D I+  
Sbjct: 513 NVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVCSTHDWILFF 568

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902
           ++ G + R+   E+  ASR  +G  + +  +   +ER+  V +++  E 
Sbjct: 569 TNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQLQSYED 617


>gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 813

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 554/896 (61%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A ++NP+I +  L +II+GPDFPTGA ILG+ GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR ++A+++LN LY+ T L++ F +  +AL    P+   L  ++K +V  +++VV
Sbjct: 303 IVIEVKRDSNANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   ++         
Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +L+ +I++E+L +K++    RRT+IV    + + E+ I +ED++++++H GY+K
Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY  K + +P  
Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG+A+IN++SL+  E+IT IM             +VF T++G +++     F  I 
Sbjct: 577 SRQSRGQAIINLISLSSDEKITDIMELSNLN---EKSQLVFQTENGKIKKTDAELFTNIQ 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L+  D ++S+    +  DI++TTK G  ++F  S IR   GRN+ GVR I L
Sbjct: 634 RNGIIAISLEDGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRAIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+SM IV                                                
Sbjct: 693 GEDDKVVSMNIVED---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E +++ V+  GFGK+TS  +F   NR GKG+R   +++  +   +VA  P N 
Sbjct: 707 -------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTK--DVVATLPANL 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +D I++VS KG +IR+   +I    R T GV + +    ++ +VSV +  E    +
Sbjct: 758 DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDYIVSVTKYYEETSEE 813


>gi|262200052|ref|YP_003271260.1| DNA gyrase subunit A [Gordonia bronchialis DSM 43247]
 gi|262083399|gb|ACY19367.1| DNA gyrase, A subunit [Gordonia bronchialis DSM 43247]
          Length = 827

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/914 (38%), Positives = 507/914 (55%), Gaps = 94/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +     E   +  V +  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+  
Sbjct: 1   MTDTTLPPAGGEGDRVEPVDLGQEMQKSYIDYAMSVIVGRALPEVRDGLKPVHRRLLYAS 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK A+   E MG YHPHG+ AIYDAL R+AQ WS+R  LI+GQGNFGS 
Sbjct: 61  YDAGFRPDRSYVKSAKPVAETMGNYHPHGDTAIYDALVRLAQPWSMRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  +L D+ ++TVDF PNYDG   EP VL AR PN+L+NG G
Sbjct: 121 GNDGAAAMRYTEARLTPLAMEMLRDIDEETVDFTPNYDGKTNEPTVLPARIPNLLINGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D  +  +++PD      L A ME I+GPDFPT A+I+G  G
Sbjct: 181 GIAVGMATNIPPHNLREVADAVIWALEHPDADDETTLAACMEAIKGPDFPTAALIVGSQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V  IE+       +VVTE+PYQVN   +++ IAE V E ++  I
Sbjct: 241 IRDAYTTGRGSIRMRSVVDIEENK-GTTTLVVTELPYQVNPDNLIQSIAEQVNEGKLKGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + D+ SDR G R+V+ L+R A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 SRIEDQSSDRVGMRIVVTLRRDAVAKVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +VA + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S N E AR 
Sbjct: 360 QMIRYYVAHQIDVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASANTEAART 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL+ L R  I +
Sbjct: 420 GLM--------------------------DLLEIDEIQADAILAMQLRRLSALERQKIVD 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I++ EL  V D+    RRT+I+    D+ DED I R
Sbjct: 454 ELAEIEREIADLQDILAKPERQRAIVRDELKVVVDKYGDDRRTKIIAADGDVTDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQRRGGKGVQGAGLKQDDIVKHFFVSSTHDWILFFTTK 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYELPEANRTARGQHVANLLAFQPEERIAQVIQLKSY---QDAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL DF      G  A+ L   DE++  + C+ ++D+LL ++ GQ +RF      +
Sbjct: 631 LVKKSKLEDFDSNRSGGIAAINLRGEDELVGAQLCSADDDLLLVSQKGQSIRFHADDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D ++S+ +V                                
Sbjct: 691 RPM-GRQTSGVQGMRFNADDTLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   D+ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTGMDDYPVQGRGGKGVLTIAHD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G L+    V+D+ ++  ++  G +IR    ++R A R TKGV + +  +   V++
Sbjct: 757 RR--RGELIGALIVDDDSELYAITSGGGVIRTAAKQVRKAGRQTKGVRLMNIDEGTTVIA 814

Query: 894 VERIRESEIVDEAE 907
           + R  + E  D  E
Sbjct: 815 IARNAD-EPDDAGE 827


>gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
 gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725]
          Length = 837

 Score =  830 bits (2144), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/886 (40%), Positives = 541/886 (61%), Gaps = 86/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K
Sbjct: 2   SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL++G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + ++ L+DD+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDNP++    LME I+GPDFPTG +I G+ GI++AY TGRG + +RG 
Sbjct: 182 NLGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NKA ++E+IA+LV++KR+  I DLRDESDR G RVVIE
Sbjct: 242 VEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   ++ILN+LY+YT LQ+ F + M+AL    P+   L  IL+ ++  R EVV RRT
Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNAPKVLNLKEILQEYLKHRFEVVTRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L+KA  RAH+L G  IA+ N+D ++ IIR S +   AR  L+++             
Sbjct: 362 KFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+VQ RAIL+++L RLTGL R  I  E   +   I E  +ILS 
Sbjct: 409 -------------YAFSDVQARAILDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  IIK+ELL +K++ +  RRT I    +++  ED I  E++++T+++ GYVKR+ +
Sbjct: 456 DSKIYEIIKEELLYLKEKYNDDRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEV 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG +     ++DFV  +   S   +++ F++ G V+  KV+ +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK + NI+ + + E+I  ++   +      +  VVF TK G +++  L +F  IN SG 
Sbjct: 576 RGKLMSNIIRIREDEKIRAVIKTRDFS---KDNEVVFVTKEGLIKKTNLDEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A+KL   D+I+ V       +  + + TK G  +RF    +R   GR+++GV+ I+L  
Sbjct: 633 KAIKLKEDDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRP 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD ++S  ++   D                                              
Sbjct: 692 GDSIVSALLIKDEDGS-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILTV+E G+GKRT   ++ +  RSGKG+     +   + GA+V+V PV + +
Sbjct: 708 --------ILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNA--KTGAVVSVLPVTEGE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +++ ++  G +IR+P++ I +  RAT+GV+I      E+VVS+ R+
Sbjct: 758 ELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRV 803


>gi|33865261|ref|NP_896820.1| DNA gyrase subunit A [Synechococcus sp. WH 8102]
 gi|33632430|emb|CAE07242.1| DNA gyrase A subunit [Synechococcus sp. WH 8102]
          Length = 875

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/909 (39%), Positives = 525/909 (57%), Gaps = 73/909 (8%)

Query: 1   MTEHIISSDE---EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M + +        + +  I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL
Sbjct: 1   MADSVGPGGGGPGDSDDRIIQADLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNF
Sbjct: 61  YAMYELGLTSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           GSVD DPPAA RYTE RLQ      LL+D+  +TVDF  N+DGS QEP VL AR P +L+
Sbjct: 121 GSVDNDPPAAMRYTESRLQALTTDSLLEDIEAETVDFADNFDGSQQEPTVLPARIPQLLL 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP HNL E+++G +A+I+NPD+    L+ +I GPDFPTG  ILGR G
Sbjct: 181 NGSAGIAVGMATNIPPHNLNELINGLLALIENPDLTDQELVRLIPGPDFPTGGQILGREG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           I+  Y  GRGSI +RGV+ IE        DR+ +++TE+PYQ NKA ++E+IAELV +K+
Sbjct: 241 IRETYLGGRGSITMRGVAAIETIEAPGRPDRDAVIITELPYQTNKAGLIERIAELVNDKK 300

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           +  I+D+RDESDR G R+V+EL+R A   V+LN L++ T+LQS FS  M+AL   +P   
Sbjct: 301 LEGISDIRDESDRDGMRIVVELRRDAYPQVVLNNLFKLTALQSNFSAYMLALVNGEPILL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL  +L+ F+ FR E + RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  T
Sbjct: 361 TLRKMLEVFLDFRVETIERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTAT 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR++L  R                            LS++Q  AIL+++L RLT L  D 
Sbjct: 421 ARQQLQDRH--------------------------GLSDIQADAILQMQLRRLTALEADK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           IR E   L  +I +  DIL  R R+ GII+ EL  + D   TPRRT I++    +ED D 
Sbjct: 455 IRLEHEDLVTKIADYKDILGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGGGLEDIDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E  VV V+  GY+KR+P+S + A  RG +G++G   + E+ V      + H ++L F
Sbjct: 515 IANERSVVLVTETGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVKLFISCNDHDTLLLF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G  Y    +R+P  S  A+G  ++ +L + + E IT+++P  E     +++ ++  T
Sbjct: 575 SDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSLIPVSEFN---DDMDLLMLT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +  G  + F +S 
Sbjct: 632 RGGFIKRTRLSAFSNIRSNGLIAINLEEGDALRWVRLAVPGDSVLIGSNAGMTIHFRLSD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVR ++L +GD ++SM ++                             
Sbjct: 692 EELRPL-GRTARGVRSMNLREGDGLVSMDVLP---------------------------- 722

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                  D   +    +E          ++L  S  G GKR     FR+  R+G G+RA 
Sbjct: 723 ---VELADRIAQSAEDDEEDDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAM 779

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                +   ALV +  +   ++++LVS+KG ++R   + I   SRA  GV +    K +R
Sbjct: 780 KFRTTD--DALVGLRVLGAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDR 837

Query: 891 VVSVERIRE 899
           +  V  +  
Sbjct: 838 LSEVVLVPP 846



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/185 (20%), Positives = 73/185 (39%), Gaps = 17/185 (9%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L   D V          ADY + +   + +    +       +  +    + +     
Sbjct: 455 IRLEHEDLV-------TKIADYKDILGRRERVFGIIQDELNQLSDRYTTPRRTEILDLGG 507

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                +L   E+ ++ V+E G+ KR    +F  ++R  +G         ++    V +F 
Sbjct: 508 GLEDIDLIANERSVVLVTETGYLKRMPVSEFEATSRGTRG----KAGTRSQGEEAVKLFI 563

Query: 847 -VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
             ND+D ++L SD+G    +P   +   SR  KG   V +    ++E + S+  I  SE 
Sbjct: 564 SCNDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEAITSL--IPVSEF 621

Query: 903 VDEAE 907
            D+ +
Sbjct: 622 NDDMD 626



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 95/257 (36%), Gaps = 21/257 (8%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G++KR  LS +   R  G     + + + D +  + +     SVL  
Sbjct: 621 FNDDMDLLMLTRGGFIKRTRLSAFSNIRSNG--LIAINLEEGDALRWVRLAVPGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN-------------ILSLNQGERITTIMPFP 637
           S+ G    ++     L      ARG   +N              + L      +      
Sbjct: 679 SNAGMTIHFRLSDEELRPLGRTARGVRSMNLREGDGLVSMDVLPVELADRIAQSAEDDEE 738

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDS-RDEILSVETCTQEN 694
           +D SS +  +V+ A+  G  +R  ++ F    R+G    AMK  +  D ++ +       
Sbjct: 739 DDASSGDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTTDDALVGLRVLGAGE 798

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           ++LL ++ G  VR    AI     R + GVR   L KGD++  + +V     D       
Sbjct: 799 EVLLVSEKGVIVRTSADAI-PQQSRAATGVRLQRLDKGDRLSEVVLVPPEAEDDTTATDD 857

Query: 755 MKHMSAQRRLISGDTEE 771
                 +        ++
Sbjct: 858 TNADDTETSDTESSAQD 874


>gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1]
 gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 868

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/831 (44%), Positives = 520/831 (62%), Gaps = 14/831 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G   NK Y K
Sbjct: 6   KEIIPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG+ ++YD L RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARIVGDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ +  H L+ D+ K+TVDF+PNYD    EP V+  R+PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSRLTHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+G +A+ID P++D+DALM+ I GPDFPT  +I G  GI+ AY TGRG + IR  
Sbjct: 186 NLTEVVNGLLALIDEPELDVDALMQYIPGPDFPTAGIINGVGGIQLAYRTGRGRVRIRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE I+VTEIPYQVNKA ++EKIAELV+EK+I  I++LRDESD+ G R+ IE
Sbjct: 246 ADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG SA+V+LN LY+ T L+S+F +NMVAL   +P+   L  IL+AF+  R EVV RRT
Sbjct: 306 VKRGESAEVVLNNLYQQTQLESVFGINMVALVDGRPQLVNLKQILEAFLRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAHVL GL +A+AN+DE++ +I+ S NP+ A+  ++ R+W    +  L+  
Sbjct: 366 IFELRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAA 425

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G   L+EVQ + ILE+RL RLTGL ++ +  E   L   I+
Sbjct: 426 TGAEASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIR 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             ++IL     LL +I+ EL  +K E    RR+ I     D++  D I  ED+VVT+SH 
Sbjct: 486 ALIEILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHA 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR P+S YRAQ+RGG+GRS    +DEDF+  L++V+TH ++L F+S G V+   V +
Sbjct: 546 GYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFWLPVHQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP     ARG+ +IN + L +GE++  ++P  E        +V FAT++G V++  L++F
Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYA---EGFFVFFATRNGTVKKTPLTEF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 GKIA+ LD  D ++ V       D++L    G+ VRF  S +R   GR + GVR
Sbjct: 663 AFRLARGKIAINLDDGDNLVGVALTDGGRDVMLFASNGKAVRFDESEVRAM-GRTATGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+G++V+S+ +V   + D                           +    + E N 
Sbjct: 722 GIRLAEGEEVVSL-VVPDGEGDILTASERGYGKRTPLSEYPKKGRGTQGVIAIQTSERNG 780

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                 +L  + + +L +S+ G   RT + +     R+ +G+    + +  
Sbjct: 781 RLVGAIQLSEQHE-VLLISDGGTLVRTRASEISQVGRNTQGVTLIRLGEGE 830



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 6/153 (3%)

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           E +   + +    R    + +        S +  +  +    +L   E  ++T+S  G+ 
Sbjct: 489 EILEDPEVLLQVIRTELNELKAEFGDDRRSEIRASEEDLDILDLIAPEDVVVTLSHAGYA 548

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KR     +R   R G+G  A      + I  L   + VN +D ++  +  G +  +PV++
Sbjct: 549 KRQPVSAYRAQKRGGRGRSAAATKDEDFIDRL---WLVNTHDTLLTFTSSGKVFWLPVHQ 605

Query: 870 IRIASRATKGVVIFS---TAKDERVVSVERIRE 899
           +  A    +G  I +     + E+V +V  +RE
Sbjct: 606 LPEAGSNARGRPIINWIPLEEGEQVQAVLPVRE 638



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 135/415 (32%), Gaps = 39/415 (9%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            + R     +  L   + + + ++++IR   N   A           S+I+   + +D  
Sbjct: 475 EEYRQLLETIRALIEILEDPEVLLQVIRTELNELKAEFG----DDRRSEIRASEEDLDIL 530

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSR 496
                 D  + LS           ++      R    R+   +   +  + L ++++   
Sbjct: 531 DLIAPEDVVVTLS--HAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDT 588

Query: 497 LLGIIKQELLSVKDELD------TPRRTRIVEGLLDMEDEDCIVRED--------MVVTV 542
           LL       +               R   I+  +   E E                V   
Sbjct: 589 LLTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLEEGEQVQAVLPVREYAEGFFVFFA 648

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+ PL+ +  +   GK    +   D      L        V+ F+S G   +  
Sbjct: 649 TRNGTVKKTPLTEFAFRLARGKIAINLDDGDNLVGVAL--TDGGRDVMLFASNGKAVRFD 706

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L +GE                   ++ A++ G  +R  L
Sbjct: 707 ESEVRAMGRTATG---VRGIRLAEGEE------VVSLVVPDGEGDILTASERGYGKRTPL 757

Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++ +  R  +  + +        ++     ++++++LL +  G  VR   S I    GR
Sbjct: 758 SEYPKKGRGTQGVIAIQTSERNGRLVGAIQLSEQHEVLLISDGGTLVRTRASEI-SQVGR 816

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           N+ GV  I L +G+   S+  V   DA  DE         A  +   G      S
Sbjct: 817 NTQGVTLIRLGEGE---SLQAVERVDASLDEAAEEGVAAGAPEQPSDGAEATPAS 868


>gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 811

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/894 (39%), Positives = 546/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI +AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIDAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIETLIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++    RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYDIMKKELLELKEKYGDKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGGKG S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         VVF TK G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFSPEKE---VVFITKKGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+++ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKTREDDDLIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  ++EI    RAT+GV I   A DE+V ++ +I++ E +++
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADDEKVAAITKIKKEEELED 811


>gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 812

 Score =  830 bits (2143), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/884 (40%), Positives = 543/884 (61%), Gaps = 86/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY++T LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKFTDLQNTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++L+ 
Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NSKIYEIMKKELLEIKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE+++  +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVSDTIVIKEFLPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K+   D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++ ++  G +IR  ++EI    RAT+GV I   A +E+V ++ 
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801


>gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 813

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/896 (39%), Positives = 555/896 (61%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE  + I  V + ++M+++YL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM  +G++ NK
Sbjct: 3   EENYQNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              K AR+ GEVMGK+HPHG++AIYDAL R+AQD+S R  L  GQGNFGS+DGD  AA R
Sbjct: 63  PTRKSARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K A  +L D+ KDTVDF PN+D   +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEVKMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLG+ +D C+A ++NP+I +  L +II+GPDFPTGA ILG+ GIK AY TGRG + 
Sbjct: 183 MAPHNLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQILGKAGIKKAYKTGRGKLK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R V+ IE    +RE+I+VTEIPYQVNKA +++KIAE V++K++  I+D+RDESDR+G R
Sbjct: 243 LRAVARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A+A+++LN LY+ T L++ F +  +AL    P+   L  ++K +V  +++VV
Sbjct: 303 IVIEVKRDANANIVLNNLYKQTQLETTFGIINLALVDGVPKILDLKELIKYYVKHQKDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L+KA+ R H++ GL IA+ N+DE+++IIR S + +  ++   ++         
Sbjct: 363 RRRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++ Q++AIL+++L RL+GL  + ++ E   L  +I+    
Sbjct: 414 -----------------FGLTDPQSQAILDMQLKRLSGLEIEKLQAEDKELAEKIEYFTS 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   +L+ +I++E+L +K++    RRT+IV    + + E+ I +ED++++++H GY+K
Sbjct: 457 ILNDEEKLISVIEEEILEIKEKYADDRRTKIVPDEGEFDIEELIEKEDVLISLTHDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ Y+ Q RGGKG S    ++ DF+  +   +TH S+L F++LG VY  K + +P  
Sbjct: 517 RLPINTYKVQNRGGKGISAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEA 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q+RG+A+IN++SL+  E+IT IM             +VF T++G +++     F  I 
Sbjct: 577 SRQSRGQAIINLISLSSDEKITDIMELSNLN---EKSQLVFQTENGKIKKTDAELFTNIQ 633

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ L++ D ++S+    +  DI++TTK G  ++F  S IR   GRN+ GVR I L
Sbjct: 634 RNGIIAISLENGDRLVSIRQIDKPCDIIVTTKKGMAIKFASSDIRSM-GRNARGVRAIRL 692

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V+SM IV                                                
Sbjct: 693 GEDDKVVSMNIVED---------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E +++ V+  GFGK+TS  +F   NR GKG+R   +++  +   +VA  P N 
Sbjct: 707 -------EVYLVVVTANGFGKKTSFNNFNNQNRGGKGVRCHKITEKTK--DVVATLPANL 757

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
           +D I++VS KG +IR+   +I    R T GV + +    ++ +VSV +  E    +
Sbjct: 758 DDDIMMVSLKGDMIRISTRDISTTGRNTLGVKLKNLENTEDFIVSVTKYYEETSEE 813


>gi|88808973|ref|ZP_01124482.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
 gi|88786915|gb|EAR18073.1| DNA gyrase subunit A [Synechococcus sp. WH 7805]
          Length = 876

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/903 (39%), Positives = 525/903 (58%), Gaps = 68/903 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 18  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 77

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE R
Sbjct: 78  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 137

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L+      LL+D+  +TVD+  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H
Sbjct: 138 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 197

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++ G +A+I+NP++    LM +I GPDFPTG  ILGRTGIK  Y +GRGS+ +RGV
Sbjct: 198 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 257

Query: 254 SHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + IE        DR+ +++T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR G R
Sbjct: 258 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 317

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR E +
Sbjct: 318 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 377

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YLL KA +R H+L+GL +A+  LD ++ +IR +P+  TAR +L +R         
Sbjct: 378 ERRTRYLLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARVQLQERH-------- 429

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSEVQ  AIL+++L RLT L  D IR E   L  +I +  D
Sbjct: 430 ------------------GLSEVQADAILQMQLRRLTALEADKIRLEHEDLVTKIADYKD 471

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL  R R+ GII+ EL  ++D    PRRT I++    ++D D I  E  VV ++  GY+K
Sbjct: 472 ILGRRERVFGIIQDELAQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  
Sbjct: 532 RMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQC 591

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  ++ +L + + E IT+++   E     ++  ++  T+ G ++R +LS F  I 
Sbjct: 592 SRTAKGTPVVQLLPIPREEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIR 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGI 727
            +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +R   GR + GVR +
Sbjct: 649 SNGLIAIGLEEGDALTWVRLAVSGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSM 707

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  GD ++SM ++    AD   +         +    S                     
Sbjct: 708 NLRDGDALVSMDVLPVELADRVAQSGDDDSDDDEAGAAS--------------------- 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      ++L  S  G GKR     FR+  R+G G+RA       +  ALV +  +
Sbjct: 747 --------DGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTDADALVGLRVL 796

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +      D+A 
Sbjct: 797 GAGEEVLLVSEKGVIVRTSADAIPQQSRAATGVRLQRLDKGDRLSEVVMVPPEAESDDAT 856

Query: 908 STE 910
             E
Sbjct: 857 EGE 859



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 105/259 (40%), Gaps = 24/259 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G++KR  LS +   R  G     + + + D +T + +  +  SVL  
Sbjct: 621 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEEGDALTWVRLAVSGDSVLIG 678

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALIN-----------ILSLNQGERITTI----MP 635
           S  G    ++     L      ARG   +N           +L +   +R+         
Sbjct: 679 SRAGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSGDDDSD 738

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSR-DEILSVETCTQ 692
             E  ++ +  +V+ A+  G  +R  ++ F    R+G    AMK  +  D ++ +     
Sbjct: 739 DDEAGAASDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTDADALVGLRVLGA 798

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
             ++LL ++ G  VR    AI     R + GVR   L KGD++ S  +++  +A+ D+  
Sbjct: 799 GEEVLLVSEKGVIVRTSADAI-PQQSRAATGVRLQRLDKGDRL-SEVVMVPPEAESDDAT 856

Query: 753 CYMKHMSAQRRLISGDTEE 771
                       +S + ++
Sbjct: 857 EGEGEEVTAETAVSAEPQD 875


>gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
 gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316]
          Length = 860

 Score =  829 bits (2142), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/917 (38%), Positives = 550/917 (59%), Gaps = 93/917 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D+     I  V +   M++ Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 11  MPDDVF--DKTTTDRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSM 68

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +++    +K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS+R  L++G GNFGSV
Sbjct: 69  IELNNGPDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSV 128

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  ++ D+ KDTVDF PN+D + +EP +L +RYPN+LVNG  
Sbjct: 129 DGDGAAAMRYTEARLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTT 188

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRT 235
           GIAVGMATNIP HNL EVV+  V +IDN      + +++ +++II+ PDFPTG +ILG  
Sbjct: 189 GIAVGMATNIPPHNLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTR 248

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G + AY TGRG +++R V++IE     + +IVVTE+PY VNKA M+ KIAELV+ K++  
Sbjct: 249 GAEEAYRTGRGKVIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDG 308

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  LRDESDR+G RVVIEL+   + +++LN+LY++T +Q  F + M+AL   +P+  ++ 
Sbjct: 309 ITALRDESDREGMRVVIELRNDVNPNIMLNKLYKHTQMQDSFGIIMLALVNNEPKVLSIT 368

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK ++  +EEVV RRTKY LNKA +R H+L GL IA+ N+DEV++IIR S     A+ 
Sbjct: 369 EMLKHYIKHQEEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKE 428

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM                          G   L++VQ +AI+++RL  LTGL RD +  
Sbjct: 429 QLM--------------------------GRFGLTDVQAQAIVDMRLRTLTGLERDKLEQ 462

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+E   IL+ R  LLG+I+ E+  + ++    R+++I +   D++ ED I  
Sbjct: 463 EHADLLKKIEELKAILADRKVLLGVIRTEISEIANKYGDDRKSQIGQDDSDIDTEDLIPN 522

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            + V+ ++ LGY+KR+ +  ++AQ RGGKG  G+   D D+V D+ + +TH  V+FF++ 
Sbjct: 523 VNTVIAMTSLGYIKRMSIDNFKAQNRGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNT 582

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K +++P  S  +RG A++N+L L  GE+I+ ++P    E       +   TK G
Sbjct: 583 GRVYRLKAYQIPEASRTSRGMAIVNLLQLAPGEKISAMIPVKGFE--DEEKCLFMVTKKG 640

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  ++DF  + ++G  A+ L   DE++ V+T T++ ++ L TK G C+ F  S +R 
Sbjct: 641 TVKKTPITDFSNVRKTGLAAITLRDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVR- 699

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R+S+GVRG+ L   D+++ M +    D+                             
Sbjct: 700 ITSRSSIGVRGMMLDDTDEIVGMQLNTQGDS----------------------------- 730

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +L VSEKG+GKRT+  +F    R GKG++   +++ 
Sbjct: 731 ------------------------LLIVSEKGYGKRTTLDEFHSQFRGGKGVKCYKITE- 765

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G ++ V  VND+++I+++++ G +I++ ++EI I  R T GV + +  K   V  + 
Sbjct: 766 -KTGNVIGVKAVNDDNEIMMITNAGIIIQLRMDEITIHGRVTSGVKMINLDKGVTVAKIA 824

Query: 896 RIRE--SEIVDEAESTE 910
           ++RE  S+   + ++ +
Sbjct: 825 KVREKISDGDHDIDNID 841



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/248 (18%), Positives = 95/248 (38%), Gaps = 17/248 (6%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               E  +  V+  G VK+ P++ +   R+ G   + + +RD+D + ++  V+    V  
Sbjct: 626 FEDEEKCLFMVTKKGTVKKTPITDFSNVRKTG--LAAITLRDDDELIEVKTVTKDAEVFL 683

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +  G         + I S  + G   +          +         + +     ++  
Sbjct: 684 VTKNGMCIHFDESDVRITSRSSIGVRGM---------MLDDTDEIVGMQLNTQGDSLLIV 734

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVR 707
           ++ G  +R  L +F      G   +K     E    ++ V+    +N+I++ T  G  ++
Sbjct: 735 SEKGYGKRTTLDEFHSQ-FRGGKGVKCYKITEKTGNVIGVKAVNDDNEIMMITNAGIIIQ 793

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  I    GR + GV+ I+L KG  V  +A V    +D D  I  +  +S +    + 
Sbjct: 794 LRMDEI-TIHGRVTSGVKMINLDKGVTVAKIAKVREKISDGDHDIDNIDDVSEEVEEENI 852

Query: 768 DTEEITSL 775
            T +    
Sbjct: 853 TTADDDEE 860


>gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1]
 gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1]
          Length = 839

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/894 (38%), Positives = 523/894 (58%), Gaps = 87/894 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V+I +EM++SY+ YA++VI+GRAIPD+RDGLKPVHRR LF M +MG   +K Y K 
Sbjct: 14  KVNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKS 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R++L++GQGNFGSVDGD PAA RYTE R
Sbjct: 74  ARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVR 133

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L++ A  LL DL K+TV+F PN+D S QEP VL A+ PN+L+NG  GIAVG+AT +P HN
Sbjct: 134 LKREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHN 193

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV D     +++PD  +  LM+I+ GPDFPTG +I+G  GI+NAY +G+G + +RGV+
Sbjct: 194 LGEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGTDGIQNAYLSGQGKLTVRGVA 253

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I++ SG R QI++TEIPYQVNKA ++E IAELV+EKRI  I+DLRDESD+ G R+VI+L
Sbjct: 254 EIDE-SGKRNQIIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVIDL 312

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A   +ILN LY++T+L+S F +   A+   +P+   LI +++ FV  R  V+ RR++
Sbjct: 313 RKDARPQLILNHLYKHTALESTFGIINYAIVDRQPKILGLIPLIEQFVRHRITVITRRSE 372

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA +R H+L GL  A+ N+D V+  IR +   + A+  L+ +              
Sbjct: 373 FDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAK-------------- 418

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L E Q  AIL+++L RL  L +  + +E   L  EI++ +++LSS 
Sbjct: 419 ------------FSLDEAQAGAILQMQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSE 466

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             +   I +EL  ++++    RRT+I   L ++  ED I  + ++V ++H  YVK + + 
Sbjct: 467 DNIRAEISRELQELREKYADKRRTQITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVD 526

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR Q RGG+G  G+ ++D D+V  +F+ +TH  +L F+S G  Y  +V+ +P GS Q++
Sbjct: 527 AYRVQGRGGRGVMGISIKDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSK 586

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+L L   ER+T ++P  E     ++ + +F T+ G + +    +F +   +G  
Sbjct: 587 GKAIVNLLDLRSEERVTAVIPVQEFS---SDRFFLFLTERGMIIKIPQDEFSRPRSTGVN 643

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L   D ++ V       +I++TTK GQ +RF    I     RN++GV G+ +   D 
Sbjct: 644 AISLREGDNLVHVMVSDGSQEIIITTKYGQSLRFHEEQI-PLRHRNALGVIGMRMKDDDI 702

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V SM ++                                                     
Sbjct: 703 VTSMTVIEEG-------------------------------------------------- 712

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              + +LT++  G+GKRT+  ++R   R   G+R   +        +V  F     ++II
Sbjct: 713 ---KHLLTITSSGYGKRTNFDEYRGHGRGTMGVRNIKLK---RNDGIVTAFSAGPEEEII 766

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           L+S +G +IR  V +I I  R+T+GV I   A  +RVV V  +   E  D ++ 
Sbjct: 767 LMSAEGIVIRTSVEKITIQGRSTQGVRIMRLAAGDRVVGVTSLSPEEQKDISDD 820


>gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1]
 gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1]
          Length = 919

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/877 (42%), Positives = 531/877 (60%), Gaps = 46/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LM+ I GPDFPT A+I GR GI +AY TGRG  ++R +
Sbjct: 186 NLTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRGRAIMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG+    ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L  GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 606 LPLASRTSRGRPIVNLLPLADGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRGI L +G +V+S+ +     A            + 
Sbjct: 723 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVPKDDGAILTVTENGYGKRTE 781

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                S        +    S          Q     E  I+ +S+KG   RT +    I 
Sbjct: 782 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853
            R+ +G+     +   +   +V +  ++    D D++
Sbjct: 840 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 873


>gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11]
 gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33]
 gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11]
          Length = 811

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/894 (40%), Positives = 547/894 (61%), Gaps = 86/894 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I  E   +   IKE  ++L  
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLEREKIDTEFKEIEALIKELREVLED 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+K+ELL +K++    RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGGKG S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ L NI++L++GE++   +   E         VVF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLLSNIINLSEGEKVRDTIVIKEFLPEKE---VVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K    D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L K
Sbjct: 633 IAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRFLTDTIRA-TGRSTQGVKAITLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDMVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+    V++  + G +V+V  V++++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKVNE--KTGKVVSVLEVSEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR  +NEI    RAT+GV I   A DE+V ++ +I++ E ++ 
Sbjct: 758 ELMCITSNGIVIRTSINEISRIGRATQGVRIMKVADDEKVAAITKIKKEEDLEN 811


>gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
 gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3]
          Length = 918

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/877 (42%), Positives = 533/877 (60%), Gaps = 46/877 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I +P + ++ LME I GPDFPT A+I GR GI +AY TGRG  V+R +
Sbjct: 186 NLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAIINGRKGIIDAYKTGRGRAVMRAL 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +E     RE+I+VTEIPYQVNKA ++EKIAELV++K+I  I+ LRDESD+ G R+VIE
Sbjct: 246 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+AN+D ++ +I+ SP P  A+ +L+++ W    ++ +++ 
Sbjct: 366 VFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L   I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL S  RL+ +IK+EL  +  E    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K  PLS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  +RG+ ++N+L L+ GERIT I+P  E      + Y++ AT +G V++  L+ +
Sbjct: 606 LPLASRTSRGRPIVNLLPLSDGERITAILPVREYA---EDKYIIMATSNGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
                +G IA+ L   D+++ V+    +++I+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDENGNAVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRGI L +G +V+S+ +     A            + 
Sbjct: 723 DEEGNPQINFKGVRPM-GRGATGVRGIKLEEGQRVVSLIVPKGDGAILTVTENGYGKRTE 781

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                S        +    S          Q     E  I+ +S+KG   RT +    I 
Sbjct: 782 LSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDE--IMLISDKGTLVRTPANGVSII 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVN----DNDQI 853
            R+ +G+     +   +   +V +  ++    D D++
Sbjct: 840 GRNTQGVTIIRTASDEK---VVGLQRIDEIQGDEDEV 873


>gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
 gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1]
          Length = 840

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/893 (41%), Positives = 541/893 (60%), Gaps = 87/893 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S   ++   +  V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  + +
Sbjct: 1   MSDLFDDNHNVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ ++YDAL RMAQD+S++  L++GQGNFGSVDGD  
Sbjct: 61  SHRSPYKKSARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K A  LL DL KDTVDF PNYD S  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H L E++D  V  IDNP+  ++ +M+I++GPDFPTG +I GR GI +AY TGR
Sbjct: 181 MATNIPPHRLNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIFGRKGITDAYTTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R  +HIE+  G++E I++ E+P+QVNK+ ++E IA+LVR+K I  I+++RDESDR
Sbjct: 241 GRIKVRAKTHIEQ-KGNKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVV+ELKR A ++++LN L++ T +Q  F + M+A++  +P+ F L+ +   F+  R
Sbjct: 300 EGIRVVMELKRDAMSEIVLNNLFKSTQMQVTFGIIMLAIHNKEPKVFNLMELFDLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IAV N+DEV++IIR S +   AR  LM R     
Sbjct: 360 KTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSR----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q +AILE+RL RLTGL  + I NEL  L   I 
Sbjct: 415 ---------------------FSLSEIQAKAILEMRLRRLTGLEIEKIENELAELLKTIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL S  ++  II++EL+ + ++  TPRRT IV+   D++ ED I  E MVVT++H 
Sbjct: 454 YLEGILKSEEKINQIIREELIEIGEKYRTPRRTEIVDDYDDIDIEDLIPNEPMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP+ +Y  Q RGGKG++ V   D+DF+   F  +TH +++F +  G +Y  KV+R
Sbjct: 514 GYIKRVPVKLYEKQHRGGKGKTAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYR 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  +         +VF T++G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQPDEKIMAIIPTTDFS---EEKGLVFFTRNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             I  +G  A+ LD  DE++  +    E   + + TK G C+RF +   R   GR S GV
Sbjct: 631 SNIRSNGVRAINLDENDELVEAKIVKPETKWLFVATKKGLCIRFKVEDAREI-GRVSRGV 689

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             I     GD V   A +   + +                                    
Sbjct: 690 TAIKFKIDGDYVCGAATLESEEDE------------------------------------ 713

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           IL +SEKG GKRT++ ++R  NR+GKG+ +  ++  ++ G +V 
Sbjct: 714 ----------------ILMLSEKGLGKRTTASEYREQNRAGKGVISMKLT--SKTGDVVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           V  V ++  ++ ++  G +IRV +  IR A R T GV + S  K ++VVS+ +
Sbjct: 756 VVMVEEDKDLMCLTSVGKMIRVDMETIRKAGRNTSGVKVVSVEKKDKVVSMAK 808


>gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens]
          Length = 880

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/849 (44%), Positives = 534/849 (62%), Gaps = 20/849 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R  +
Sbjct: 187 LAEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYALTQLQVTFGINMVALHQGQPKLLNLKDILEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ + W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL++VK+  +  RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELIFILESPERLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      +V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEADERITAILPVREYE---EGRHVFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     N+++L +  G+ VRFP + +R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L +GD VIS+ +                  +A     +      T       V    
Sbjct: 723 GINLGEGDSVISLIVPRGEGDILTVTQNGFGKRTAVTEYPTK--SRATQGVISIKVSERN 780

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +            I+ +++ G   RT   +  +  R+ +G+     ++      +V + 
Sbjct: 781 GQVVGAVQVETSDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDE---NVVGLQ 837

Query: 846 PVND--NDQ 852
            V +   D+
Sbjct: 838 RVAEPVEDE 846



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 86/245 (35%), Gaps = 15/245 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G V
Sbjct: 646 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSANGKV 703

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +    ++      A G   IN+   +                      ++  T++G  +
Sbjct: 704 VRFPETQVRSMGRTATGVRGINLGEGD---------SVISLIVPRGEGDILTVTQNGFGK 754

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  ++++   +R+ +  + +       +++        + I++ T  G  VR  +S +  
Sbjct: 755 RTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETSDQIMMITDAGTLVRTRVSEV-S 813

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV  I  A+ + V+ +  V     D +         + +      D  +  + 
Sbjct: 814 VVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLEPGAEAVEEDTTPLDDGDDAAE 873

Query: 776 KNDSS 780
             D  
Sbjct: 874 PVDDD 878


>gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
 gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1]
          Length = 885

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/844 (45%), Positives = 533/844 (63%), Gaps = 19/844 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A I N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLNEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+    +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  L++A+AN+DEV+ +I+ +P P  A+  L+ R W    +  +++ 
Sbjct: 366 IFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  YL+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 426 AGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I +EL  V+      RR+ I   + D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVITEELELVQATYGDERRSEITAAVHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+P  E        ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILPVSEFS---PEKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    ++DI+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 SNVRANGLIAVNLRDDDSLIGVDITDGQSDIMLFSKQGKVVRFSEDKVRAM-GRTAAGVR 721

Query: 726 GISLAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+ LA  DQV+S+ +  +  D     +  Y K    +     G   +       S   G 
Sbjct: 722 GMKLADEDQVVSLIVPSNQGDILTVTQNGYGKRTELEEYPTKGRATQGVVSIKVSERNGP 781

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +      E   +   ++ +++ G   RT   +     R+ +G+     +      ++V +
Sbjct: 782 VVGAIQVE---EGDEMMMITDAGTLVRTRVAEVSQVGRNTQGVTLIRTASDE---SVVGL 835

Query: 845 FPVN 848
             ++
Sbjct: 836 QRID 839



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 71/435 (16%), Positives = 159/435 (36%), Gaps = 29/435 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E + +++ +        E       A
Sbjct: 469 EHEKILDEYKALLEEIAELMHILASTERLMEVITEELELVQATYG-----DERRSEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
               D+ +LI      +      Y+ + Q  +  E +     G     ++ E     + +
Sbjct: 524 VHDIDMEELIAREDVVVTLSHEGYV-KYQILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
               D +   S      + ++  +     T R   IV  L   E E             E
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSPE 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I    + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFSNVRANG--LIAVNLRDDDSLIGVDITDGQSDIMLFSKQG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A   A +  + L   +++ +++         N   ++  T++G 
Sbjct: 701 KVVRFSEDKVRAMGRTA---AGVRGMKLADEDQVVSLI------VPSNQGDILTVTQNGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R +L ++    R+ +  + +   +     +      + +++++ T  G  VR  ++ +
Sbjct: 752 GKRTELEEYPTKGRATQGVVSIKVSERNGPVVGAIQVEEGDEMMMITDAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  A  + V+ +  +   +         ++  +  +   SGD     
Sbjct: 812 -SQVGRNTQGVTLIRTASDESVVGLQRIDEVEELELPEGEEVEANAETQAPESGDLAADD 870

Query: 774 SLKNDSSVEGNISEE 788
           S  +DS+ + + +EE
Sbjct: 871 SAADDSAADDSATEE 885


>gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT]
 gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1]
 gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1]
 gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT]
          Length = 809

 Score =  829 bits (2141), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/889 (40%), Positives = 522/889 (58%), Gaps = 94/889 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I DEM+ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M  +G++ N  Y K 
Sbjct: 5   NTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTPYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ +S R  L++GQGNFGSVD DP AA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ K+TVDF PN+D S +EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 125 LAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+      +IDNPD  +D LM+ + GPDFPTG  ILG  GIK+AYATG+G IVI+  +
Sbjct: 185 LAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKA 244

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HI +    R+ I VTEIPYQVNKA ++ KIAELV+E+++  I+DLRDESDRQG RVVIEL
Sbjct: 245 HIGEVET-RKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVVIEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +LN LY++T++++ F VNM+AL   +P+  +L  +LK F+ FR  ++ RR++
Sbjct: 304 KRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNFIDFRHLIITRRSQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L  A+DRAH+L GL  A+  +D ++ IIR S N + AR+ L+                
Sbjct: 364 FELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S VQ +AIL+L+L RL  L R  I +E   L   I    D+LS  
Sbjct: 410 ------------FDFSVVQAQAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHP 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            ++  ++K++   +K     PR T I    +++   ED +   D++VT+S  G++KRVP 
Sbjct: 458 EKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPA 517

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGSPQ 612
           +V+R Q RGG G  G+  R+ D V  L +  TH ++LFF++ G V+  + + +P   S  
Sbjct: 518 NVFRLQHRGGTGIMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRI 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A++N++ + Q ERIT I+          + +++ AT  G +++  L +F  +  SG
Sbjct: 578 AKGTAIVNLIPVTQDERITAILDLKSFP---ADHFLLMATNKGEIKKTSLQEFTAVRSSG 634

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAM L + DE+++     +E DILL T+LGQ +RFP+S +R  + R S GV+ I L+  
Sbjct: 635 LIAMDLTASDELVAAVETIEEKDILLATRLGQSIRFPVSELRT-SLRASGGVKAIVLSME 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +                                                    
Sbjct: 694 DEVVSMDVAQEGT----------------------------------------------- 706

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  ++TV+E G GK T+  ++   +R+G G+    V  +++ G +VA   V+  DQ
Sbjct: 707 ------MVITVTENGAGKLTAIEEYPQQHRAGSGVINFKV--VDKTGEVVASKVVSVTDQ 758

Query: 853 IILVSDKGTLIRVPVNE------IRIASRATKGVVIFSTAKDERVVSVE 895
           ++L+S  G + R  V E      I I  RAT+GV +    + +RVV+V 
Sbjct: 759 MMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEGDRVVAVA 807



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 100/280 (35%), Gaps = 16/280 (5%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L++   +   + + ED  S          +     ++          S +  ++    D 
Sbjct: 437 LDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFRVED- 495

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                     + I+  ++ G   R P +  R    R   G+ G+   + D V  +++   
Sbjct: 496 -----LVPHMDVIVTLSERGFIKRVPANVFR-LQHRGGTGIMGMPTREADAVRFLSVSDT 549

Query: 744 ADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            D         ++  ++                       + +  I+     +    + F
Sbjct: 550 HDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITAILDLKSFPADHF 609

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  + KG  K+TS  +F        G+ A D++       LVA     +   I+L +  
Sbjct: 610 LLMATNKGEIKKTSLQEFTAVR--SSGLIAMDLTA---SDELVAAVETIEEKDILLATRL 664

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           G  IR PV+E+R + RA+ GV     + ++ VVS++  +E
Sbjct: 665 GQSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMDVAQE 704


>gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
 gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259]
          Length = 850

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/900 (39%), Positives = 532/900 (59%), Gaps = 86/900 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V I  EM+ SY+ Y+++VI+ RA+PD+RDG KPV RRIL+ MM +G   +K Y
Sbjct: 3   DQDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           +K AR  GEV+GKYHPHG+++IY AL RMAQDW+LR  L++GQGNFGS+DGD PAA RYT
Sbjct: 63  MKSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      ++ DL K+TVD + N+D   +EP VL  R PN LVNG  GIAVGMATN+P
Sbjct: 123 ESRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNL EV+DGCVA IDNP+ID++ LME I+ PDFPTGA I+G  G+++AY TG G I++R
Sbjct: 183 THNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIMGLQGVRSAYETGHGRIILR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      + IVV EIPY VNKA +++ IA LV EKRI  I+D+ DESDR+G R+V
Sbjct: 243 AKTEIENGPQ-HDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR A+A+V+LN+L++ T+LQS F+VN V L   +P+  +L   ++ FV  R EVV+R
Sbjct: 302 IEVKRDANANVLLNKLFKMTALQSSFAVNCVGLVHGRPKVLSLKDCIRTFVDHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA++RAH+L GL IA  N+DEVVR+IR S  P  A   L +R           
Sbjct: 362 RTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L ++Q +AI+++RLA+LT + +D +  E   L  +I     IL
Sbjct: 411 ---------------FELDDIQAKAIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K EL  VK++    RRT I     +   ED    +++++T+SHLGY+KR 
Sbjct: 456 TDDELCRQVMKDELNEVKEKYGDVRRTEIKLSAEEFNPEDFYADDEVIITISHLGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DF+  ++  + H ++LFF++ G  Y  KV+ LP G+ 
Sbjct: 516 PLAEFRAQGRGGVGSRGGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            A+G+A+ N+L++   + +   +      D     + YVVF T  G +++  L ++ +  
Sbjct: 576 NAKGRAIQNMLNIEADDSVNAFLYIKKLNDPEFNKSHYVVFCTAEGIIKKTCLEEYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   D ++SV     ++++++  + G+ +RF   A+R   GR S GVRGI L
Sbjct: 636 TNGVKAITIREEDRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTM-GRVSTGVRGIRL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            +   DQ + M  +   +                                          
Sbjct: 695 DEDGEDQAVGMVCINDPEK----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + I+ VS++GFGKR++  D+R +NR GKG++   ++  ++ G + A+  V
Sbjct: 714 ----------ETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLT--DKTGKVAAIKSV 761

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
            D++ +++++  G  +R+ V ++R+  RAT+GV + +  K ++ + SV  +   +   EA
Sbjct: 762 TDDNDLMIINRSGITLRLKVADVRVMGRATQGVKLINLTKRNDSISSVCVVTTEDEDAEA 821


>gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 824

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/840 (44%), Positives = 524/840 (62%), Gaps = 34/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY++T++Q+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+  LDEV+ +IR S   E AR  LMQ+         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G  + EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L L++ E I TI+P   D    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++S +       I++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+    D     +  Y K   A    I     +     N +   G I  
Sbjct: 694 LEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +       E+ ++ ++  G   R +  D     R+ +G++   +S  NE   +  V  V
Sbjct: 754 VKTV---TGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810


>gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
 gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185]
          Length = 834

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/913 (39%), Positives = 543/913 (59%), Gaps = 100/913 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K
Sbjct: 2   SNVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL++G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K ++ L+DD+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++DG +A+IDNP++    LME I+GPDFPTG +I G+ GI++AY TGRG + +RG 
Sbjct: 182 NLGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGIIDGQKGIRDAYMTGRGKVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NK+ ++E+IA+LV++KR+  I DLRDESDR G RVVIE
Sbjct: 242 VEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   ++ILN+LY+YT LQ+ F + M+AL    P    L  IL  ++  R EVV RRT
Sbjct: 302 VKKGEEPELILNKLYKYTELQNTFGIIMLALVNNAPRVLNLKEILHEYIKHRFEVVTRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L+KA  RAH+L G  IA+ N+D ++ IIR S +   AR  L+++             
Sbjct: 362 KFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           S+VQ RAIL+++L RLTGL R  I  E   +   I E  +ILS 
Sbjct: 409 -------------YAFSDVQARAILDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  IIK+ELL +K++ +  RRT I    +++  ED I  E++++T+++ GYVKR+ +
Sbjct: 456 DSKIYEIIKEELLYLKEKYNDNRRTLIENERMEILPEDLIKDENVILTLTNKGYVKRMEV 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGGKG +     ++DFV  +   S   +++ F++ G V+  KV+ +P  S Q+
Sbjct: 516 SKYKAQKRGGKGVASQNTIEDDFVESIESASNLDTLMIFTNQGRVFNIKVYEIPETSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK + NI+   + E+I  ++   +         VVF TK G +++  L +F  IN SG 
Sbjct: 576 RGKLMSNIIRTREDEKIRAVIKTRDFSKENE---VVFVTKEGLIKKTNLDEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A+KL   D+I+ V       +  + + TK G  +RF    +R   GR+++GV+ I+L  
Sbjct: 633 KAIKLKEEDDIIYVGLIEKIDQEQVFIATKQGYSIRFNSDNVRP-TGRDTMGVKSITLRP 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD ++S  ++   +                                              
Sbjct: 692 GDSIVSALLIKDEEGS-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILTV+E G+GKRT   ++ +  RSGKG+     +   + GA+V+V PV + +
Sbjct: 708 --------ILTVTENGYGKRTRIDEYPLQARSGKGVINIRCNA--KTGAVVSVLPVTEGE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER--------------I 897
           +++ ++  G +IR+P++ I +  RAT+GV+I      E+VVS+ R              I
Sbjct: 758 ELMAITSSGIVIRMPLDTIALYGRATQGVIIMKVDGAEKVVSITRVKSEEEEEISELNSI 817

Query: 898 RESEIVDEAESTE 910
            +   ++E E  E
Sbjct: 818 EDETNIEEVEIVE 830


>gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
 gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp.
           SKA34]
          Length = 887

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 387/858 (45%), Positives = 545/858 (63%), Gaps = 28/858 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT ++I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV++GC+A I++ DI +D LME I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMISGRKGIIDAYHTGRGKVYMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQPKIFNLKEMLKCFVNHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KARDRAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + ILSS  RL+ +I++EL  VK++ +  RRT I     D++ ED I +ED+VVT+SH 
Sbjct: 486 ELMYILSSSDRLMEVIREELELVKEQFNDERRTEITAASHDIDLEDLITQEDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG++   M++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 546 GYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRGRMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L + ERIT I+P  E      + +V  AT  G V++  L+DF
Sbjct: 606 LPLASRTARGKPIVNILPLEENERITAILPVREYT---EDKFVFMATADGTVKKTPLTDF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-----------AIR 714
            +   +G IA+ L   D ++ V+    + DI+L +  G+ VRF  S            +R
Sbjct: 663 SRPRSAGIIAVNLREGDSLIGVDVTDGDCDIMLFSAFGKVVRFYESPVIDAEGNAKGGVR 722

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GVRGI LA+GD+VIS+ IV H D D             +       +     
Sbjct: 723 GM-GRTAAGVRGIKLAEGDKVISL-IVPHNDGDVLTVTENGYGKRTELAEYPAKSRATQG 780

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           + +    E N S     + +  ++F + ++  G   RT   +     R+ +G+      +
Sbjct: 781 VVSIKVSERNGSVVGAIQAEDGDEF-MMITNAGTLVRTRVSEVSRVGRNTQGVTLIRTIE 839

Query: 835 INEIGALVAVFPVNDNDQ 852
             +   +V +  +++ D+
Sbjct: 840 GEK---VVGLQRIDEPDE 854



 Score = 71.4 bits (173), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 101/258 (39%), Gaps = 20/258 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+ PL+ +   R  G     V +R+ D +  + +      ++ F
Sbjct: 639 YTEDKFVFMATADGTVKKTPLTDFSRPRSAG--IIAVNLREGDSLIGVDVTDGDCDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARG--------KALINILSLNQGERITTIMPFPEDESSWN 644
           S+ G V +     +      A+G         A +  + L +G+++ +++         N
Sbjct: 697 SAFGKVVRFYESPVIDAEGNAKGGVRGMGRTAAGVRGIKLAEGDKVISLI------VPHN 750

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTK 701
           +  V+  T++G  +R +L+++   +R+ +  + +        ++        ++ ++ T 
Sbjct: 751 DGDVLTVTENGYGKRTELAEYPAKSRATQGVVSIKVSERNGSVVGAIQAEDGDEFMMITN 810

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G  VR  +S +    GRN+ GV  I   +G++V+ +  +   D +  E    ++  S +
Sbjct: 811 AGTLVRTRVSEV-SRVGRNTQGVTLIRTIEGEKVVGLQRIDEPDEELIEDAELVEGESVE 869

Query: 762 RRLISGDTEEITSLKNDS 779
                             
Sbjct: 870 NTEQPAADTSPDDSTEQE 887


>gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
 gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192]
          Length = 809

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/889 (39%), Positives = 506/889 (56%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+  ++ + 
Sbjct: 5   KGKVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K  RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R  ++ GQGNFGS+DGDPPAA RYTE
Sbjct: 65  KSGRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  +L D+ K+TVDF PNYD S +EP VL A  P +L+NG  GIAVGMATNIP 
Sbjct: 125 AKLHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV     AVIDNP+I    L+  ++GPDFPTG +I G+ GI++AY TG+G +V+R 
Sbjct: 185 HNLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E     RE IVVTEIPY VNK+++LE++A LVR+K+I  I+++RDESDR G R+V 
Sbjct: 245 RLSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVF 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG    V++N+L+  T LQ+ F VN +AL G KP+  TL  I++ F++ R+EVV RR
Sbjct: 305 ELKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L KA +RAH+L GL IA+ N+DEV+ II+ S   ++AR  LM+R            
Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++RL +LT L    I  EL +    I+E  ++L 
Sbjct: 413 --------------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S  ++L ++K E L +  E    RRT IV E   D++ ED I +EDMVV VS  G +KR+
Sbjct: 459 SERKILEVVKNETLELAKEYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRM 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S YR Q RGGKG  G  +  +D V+ LF+ STH  +LF S+ G  Y  KV  +P GS 
Sbjct: 519 PVSAYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++GK++ +++ L+  E+++ ++     E       V   T  G  +R  +         
Sbjct: 579 VSQGKSIRSLVQLSPDEQVSAVVSVETFE---EEREVFMITAKGLAKRLPVPALSNARTR 635

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  D ++       + ++++ T+ G  +R      R   GR + GV  + L  
Sbjct: 636 GVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEP 694

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V     V                                                  
Sbjct: 695 GDEVCGAVPV-------------------------------------------------- 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               + + +L V+  G+GKR     F    R  KG  A  VS     G L AV  V   D
Sbjct: 705 ---EEGKDLLLVTSGGYGKRVEFSQFTAHGRGTKGQIAYKVSAR--TGELAAVLSVEAKD 759

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +++V+ +G +I++ V +I +  R   GV + +  K + VVSV+R+   
Sbjct: 760 DVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVARE 808



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD+ DE++++   ++  D   + +     RF +S       R +  +  + L K   +
Sbjct: 384 IALDNIDEVIAIIKKSRTVD---SARNNLMRRFGLSE------RQAQAILDMRLQKLTSL 434

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-------GNISEE 788
            +  I+   +A         + + ++R+++     E   L  +   E           + 
Sbjct: 435 ETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKEYGDERRTEIVAEEAEDL 494

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPV 847
             ++L  KE  ++ VS  G  KR     +R   R         +        +V+ +F  
Sbjct: 495 DIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGR----GGKGLMGGKLSGDDVVSHLFVA 550

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIVD 904
           + +D I+ +S++G    + V+EI   SR ++G     +   + DE+V +V  +   E   
Sbjct: 551 STHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSVETFEEER 610

Query: 905 E 905
           E
Sbjct: 611 E 611


>gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93]
          Length = 824

 Score =  829 bits (2140), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/840 (44%), Positives = 525/840 (62%), Gaps = 34/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQHPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY++T++Q+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANAKVILNNLYKHTAMQTSFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LMQ+         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQELIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G  + EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVAGGAEEFEDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTNEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  LIN+L L++ E I TI+P   D    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGIPLINLLELDKDEWINTIIPI--DNEFDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++S +       I++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISAKLTDGSKHIIVGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+    D     +  Y K   A    I     +     N +   G I  
Sbjct: 694 LEDGDEVVGMEILEDGCDVLVVTKNGYGKRTPASEYRIQSRGGKGIKTCNITEKNGPIVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +       E+ ++ ++  G   R +  D     R+ +G++   +S  NE   +  V  V
Sbjct: 754 VKTV---TGEEDLMLITASGILIRIAVSDISRMGRNTQGVKLIRLSDDNEHEYVATVAKV 810


>gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
 gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera
           DSM 4582]
          Length = 921

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/910 (39%), Positives = 516/910 (56%), Gaps = 78/910 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 48  EITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 107

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + R+AQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 108 ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 167

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 168 MSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 227

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+ GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 228 LSEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 287

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+V+E
Sbjct: 288 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 347

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL+AFV  R EVV RRT
Sbjct: 348 VKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRREVVTRRT 407

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ + W+  ++  +++ 
Sbjct: 408 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAMLER 467

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 468 AGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNFIA 527

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL S  RL+ +I++EL +V+D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 528 ELIFILQSPDRLMEVIREELEAVRDQFGDQRRTEITANSSDINIEDLINQEDVVVTLSHQ 587

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +                                  
Sbjct: 588 GYVKYQPLSDYEAQRRGGKGKSAARI---------------------------------- 613

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                   + +  I+ L +                       +  A++            
Sbjct: 614 --------KEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGA---------- 655

Query: 666 IQINRSGKIAMKLDSRDEILSVET----CTQENDILLTTKLGQCVRFPISAI-RVFAGRN 720
                   + +     DE ++         +   + + T  G   +  ++   R      
Sbjct: 656 ---RGRPIVNLLPLEADERITAILPVREYEEGRHVFMATASGTVKKTALTEFSRPR---- 708

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S G+  ++L +GD++I    V   D   +  +        +       +   T+      
Sbjct: 709 SAGIIAVNLNEGDELIG---VDLTDGSNEVMLFSANGKVVRFPESQVRSMGRTATGVRGI 765

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G         +   E  ILTV++ G+GKRT+  ++   +R+ +G+ +  VS+ N  G 
Sbjct: 766 NLGEGDSVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN--GQ 823

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V   DQI++++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E 
Sbjct: 824 VVGAVQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEP 883

Query: 901 EIVDEAESTE 910
              +E +S E
Sbjct: 884 VEDEELDSIE 893



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 15/245 (6%)

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G VK+  L+ +   R  G     +   DE    DL        V+ FS+ G V
Sbjct: 687 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNEGDELIGVDL--TDGSNEVMLFSANGKV 744

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +    ++      A G   IN+   +                      ++  T++G  +
Sbjct: 745 VRFPESQVRSMGRTATGVRGINLGEGD---------SVISLIVPRGEGDILTVTQNGYGK 795

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  ++++   +R+ +  + +       +++        + I++ T  G  VR  +S +  
Sbjct: 796 RTAVTEYPTKSRATQGVISIKVSERNGQVVGAVQVETTDQIMMITDAGTLVRTRVSEV-S 854

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV  I  A+ + V+ +  V     D +               +    +     
Sbjct: 855 VVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSIEPGEAIDDGTPLDDSDDGEVVD 914

Query: 776 KNDSS 780
             D  
Sbjct: 915 DADDE 919


>gi|213966249|ref|ZP_03394433.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
 gi|213951101|gb|EEB62499.1| DNA gyrase, A subunit [Corynebacterium amycolatum SK46]
          Length = 867

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/918 (38%), Positives = 520/918 (56%), Gaps = 98/918 (10%)

Query: 1   MTEHIISSDEEEEKGIT-----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++   +       G+       + I +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRR
Sbjct: 1   MSDDNNNDGSSFGSGVLGHQVRPIDINEEMQSSYIDYAMSVIVGRALPEIRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M   G    + YVK A+   + MG YHPHG++AIYD + RMAQ WS+R  L++GQG
Sbjct: 61  ILYAMFDNGYRPERGYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   D PAA RYTE RL   A  ++ D+ ++TVDF+PNYDG   EPV+L +R P +L
Sbjct: 121 NFGSRGDDGPAAMRYTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVI 231
           +NG GGIAVGMATNIP HNL EV D     +DNPD      LDA+ME I+GPDFPT A I
Sbjct: 181 MNGSGGIAVGMATNIPPHNLREVADAINWCLDNPDADEKTTLDAVMERIKGPDFPTAAQI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +G  GIK AY TGRGSI +RGV+ IE+    R+ IV+TE+PYQVN   M+  IA+ V++ 
Sbjct: 241 VGDKGIKEAYTTGRGSIRMRGVTSIEQEGT-RQSIVITELPYQVNPDRMIANIADQVKDG 299

Query: 292 RIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           R+  IA + DESD + G R+V++LKR A   V+LN LY+++ LQ+ F  NM+A+    P 
Sbjct: 300 RLQGIASIDDESDLKWGMRIVVKLKRDAVPRVVLNNLYKHSQLQTSFGANMLAIVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              +  ++  +VA + EV+VRRT+Y L++   RAH+L GL  A+  LDEV+ +IR S   
Sbjct: 360 TLRIDQMVTLYVAHQIEVIVRRTQYRLDEKEKRAHILRGLVKALDMLDEVIALIRRSATV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +TAR  LM                          G + + E+Q  AIL ++L RL  L R
Sbjct: 420 DTARTGLM--------------------------GLLDIDEIQADAILAMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I +EL  + +EI +  DIL++  R   I+K+EL  V ++    RRT+IV    D+ +E
Sbjct: 454 QKIIDELAEIELEIADLKDILANPDRQRAIVKEELGEVVEKYGDDRRTQIVAAEGDVTEE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I RE++VVT++  GY KR  +  Y+AQRRGGKG  G  ++ +D V   F+ STH  +L
Sbjct: 514 DLIARENVVVTITSTGYAKRTKVDAYKAQRRGGKGVRGADLKQDDIVRHFFVCSTHDWIL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP  +  ARG+ + N+L     ERI  ++         ++ Y+V 
Sbjct: 574 FFTNKGRVYRLKAYELPEATRAARGQHVANLLEFQPEERIAEVLQIQSY---QDSPYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++++L D+     +G IA+ L   D ++    C+ ++D+LL ++ GQ +RF  
Sbjct: 631 ATSEGKVKKSRLEDYESARSAGLIAINLREGDSLIGARLCSADDDLLLVSERGQAIRFTA 690

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           S   +R   GR + GV+G+     D+++SM +V                           
Sbjct: 691 SDDALRPM-GRATAGVQGMRFKGDDKLLSMVVVEE------------------------- 724

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       E  +L  +  GFGK+T   ++   NR G G+ 
Sbjct: 725 ----------------------------EHNLLVATTGGFGKKTKLSEYTPQNRGGMGVL 756

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                   + G L+    V+++D+I  V+  G +IR  VNEIR  SRATKGV + + A  
Sbjct: 757 TLKYDP--KRGPLMGALVVDNDDEIFAVTSAGDIIRTNVNEIRATSRATKGVRLVNLADG 814

Query: 889 ERVVSVERIRESEIVDEA 906
             +++++R  E E  + A
Sbjct: 815 VELLAIDRNVEDEGEETA 832


>gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
 gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817]
          Length = 843

 Score =  828 bits (2139), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/895 (40%), Positives = 548/895 (61%), Gaps = 86/895 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I +  I DEM+ SYL Y+++VI+ RA+PD+RDG+KPVHRRILF M ++G+ ++K Y K
Sbjct: 2   SNINNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R  LI G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K ++ LL+D+ K+T+DFR N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMAKISNELLEDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNP++    LME I+GPDFPTG +I G  GIK+AY TGRG + +RG 
Sbjct: 182 NLGEVVDGTLALIDNPELTPLDLMEYIKGPDFPTGGIIDGDKGIKDAYMTGRGKVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NKA ++EKIAELV++K+IV I+DLRDESDR G RVVIE
Sbjct: 242 IEIEELKNGKINIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   ++ILN+LY+YT LQS F + M+AL    P    L  I++ ++  R EV+ RRT
Sbjct: 302 LKKGEEPELILNKLYKYTDLQSTFGIIMLALVNNTPRVLNLKQIIEEYIKHRFEVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KA  RAH+L G  IA+ N+D ++ ++R + +   AR +L+++             
Sbjct: 362 QFNLDKAEKRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q RAIL+++L RLTGL RD +  E   +   I E  +IL++
Sbjct: 409 -------------YGFTDIQARAILDMKLQRLTGLERDKVEAEYQEIEKYISELREILAN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K EL  +KD+ D  RRT I +   ++  ED I  E++++T ++ GYVKR+ L
Sbjct: 456 DSKIYEIMKTELQELKDKYDDDRRTVIEKERKEINPEDLIKDEEVILTFTNKGYVKRMEL 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQ+RGG+G +     ++DFV ++       +++ F++ G VY  KV+ +P  S Q+
Sbjct: 516 SKYKAQKRGGRGVASQNTVEDDFVENIESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + NI++L   E+I  I+   +  +      V+F TK G V++  LS+F  IN SG 
Sbjct: 576 RGRLIGNIINLKTDEKIRAIIKTRDFSNENE---VIFVTKDGTVKKTNLSEFKNINSSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            A+KL   D+I+ V          +L+ T+ G  +RF    +R   GR+++GV+G++L +
Sbjct: 633 KAIKLKENDDIIYVGLIEDIVNEQLLIATQAGYSIRFSCEELRA-TGRDTMGVKGLTLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++   +                                              
Sbjct: 692 GDTVVSALLIKDIENSS------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILT++E G+GKRT   ++ + +R GKG+     S   + G++V+V  V+ ++
Sbjct: 709 --------ILTITENGYGKRTKIDEYPLQSRIGKGVINLRCSA--KTGSVVSVLSVSTDE 758

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905
           +++ ++  G +IR+ V++I +  RAT+GV+I     KDE+VVS+ R++  E  DE
Sbjct: 759 ELMAITSSGVVIRIAVDDIVLYGRATQGVIIMKVHGKDEKVVSITRVKSEENEDE 813


>gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A
 gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 847

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/896 (41%), Positives = 542/896 (60%), Gaps = 68/896 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  K I  + I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +  +WNK
Sbjct: 2   KEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +LI+GQGNFGS+DGD  AA R
Sbjct: 62  TYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ LL+DL K+TV F  NYDG+ + P VL A+ PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN+ EV++GC+A ID+ +I L  LME I GPDFPT  +I G+ GI+ AY TG+G I 
Sbjct: 182 IPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKIY 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           IR  S IE +    ++ I++ E+PYQVNKA +++ IA LV+EK+I  I  LRDESD++G 
Sbjct: 242 IRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K+   A++ILNQLY  T L+  F +NMVAL   +P+  TL  IL AF+  R ++
Sbjct: 302 RIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRKI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ + LNK R + H+L GL I++ N+D ++ +I+ S   E A+ +L    W +   +
Sbjct: 362 IMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQ 421

Query: 429 DLIDLID--------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               L          D           +L+  Q +AILELRL +LT L    + +E   L
Sbjct: 422 YTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQL 481

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
                   +IL + + L  I+K EL+ ++D     RRT+I     D+   D I +E++V+
Sbjct: 482 FKTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKINVNYSDINTSDLINKENVVI 541

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S+ GYVK   LS Y AQ+RGGKG+  V  ++EDF+ +L + +TH  +L FSS G +Y 
Sbjct: 542 TLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYW 601

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP  S  ARG+ ++N+L L+  ERIT I+P  E +   +++ +  AT  G V++ 
Sbjct: 602 MKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYK---DSINIFMATSKGMVKKT 658

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L +F +    G IA+ L + DE++ V      N I+L T  G+ V F    +R   GR 
Sbjct: 659 SLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILVR-KTGRT 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           ++GV+GI + K D+V+S+ +                                        
Sbjct: 718 AIGVQGIKIKKSDKVVSLVV---------------------------------------- 737

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                          K   IL ++E G+GKRT  ++F I +R+ +G  A  ++K N  G 
Sbjct: 738 -------------PKKHGNILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKN--GI 782

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++    V + DQII++++ GTL+R  V EI I  R T+GV+I  T+K E+VV++++
Sbjct: 783 VIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKKEKVVALQK 838


>gi|311741689|ref|ZP_07715511.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311303210|gb|EFQ79291.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 850

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/915 (37%), Positives = 529/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNPD D    L+A ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE++   R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y LN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L +L  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRKLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I+  EL  + D+    RRT I+    D+ DED I R
Sbjct: 450 ELAEIEREIADLKDILAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   ARG+ + N+L     E+I  ++     E   +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPEGGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++SM++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVHDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT+  ++    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTTQGRGGLGVMTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V+++D+I  ++  G +IR  V++IR +SRAT GV + +   D  +++
Sbjct: 753 P--KRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLGDDVELLA 810

Query: 894 VERIRESEIVDEAES 908
           ++R  E +  ++A++
Sbjct: 811 IDRNVEEDGEEDAQA 825



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 92/250 (36%), Gaps = 13/250 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     + + + D +    +VS    +L
Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +          P  R  A +  +     +++ ++          +  +++ 
Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVV------HDGEFLLV 721

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R G   M       R +++   +  ++++I   T  G  +R
Sbjct: 722 ATSGGYGKRTAIEEYTTQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIR 781

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  IR  + R ++GVR ++L    +++++   +  D + D +       +        
Sbjct: 782 TEVDQIRP-SSRATMGVRLVNLGDDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840

Query: 768 DTEEITSLKN 777
              + +  + 
Sbjct: 841 KAGDASKDEE 850


>gi|194477220|ref|YP_002049399.1| DNA gyrase subunit A [Paulinella chromatophora]
 gi|171192227|gb|ACB43189.1| DNA gyrase subunit A [Paulinella chromatophora]
          Length = 882

 Score =  828 bits (2138), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/915 (38%), Positives = 526/915 (57%), Gaps = 63/915 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       E +  I    + DEM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MVDSTGP--GESDGRIIQTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ Y KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R+ LI+G GNFGSV
Sbjct: 59  YELGLSSDRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RLQ  A   LL+D+  +TVDF  N+DGS QEP V+ AR P++L+NG 
Sbjct: 119 DSDPPAAMRYTESRLQPLATESLLEDIEAETVDFIDNFDGSQQEPTVMPARVPHLLLNGS 178

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE++D  +A+I +P+I   AL+ I+ GPDFPTG  ILGR GI+ 
Sbjct: 179 SGIAVGMATNIPPHNLGELIDALLAIIADPEISDSALITIVTGPDFPTGGQILGRKGIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKT----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           AY TGRGS+ +RGV+ IE        DR+ +++TE+PYQ NKA+++E+IAELV +K++  
Sbjct: 239 AYTTGRGSVTMRGVASIETIEVQGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLDG 298

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+D+RDESDR G R+V EL+R A   V+LN L++ T LQS FS +++AL   +P   TL 
Sbjct: 299 ISDIRDESDRDGMRIVAELRRDAYPQVVLNNLFKLTPLQSNFSAHLLALVKGEPVLLTLR 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  F+ FR E + RRT+YLL KA +R H L+GL +A+  LD ++ +IR + +  TAR 
Sbjct: 359 QMLHVFLDFRIETIERRTRYLLRKAEERDHTLLGLLLALDQLDPIINLIRAASDAATARY 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L                               LSE+Q  AIL+++L RLT L  D IR 
Sbjct: 419 QLQY--------------------------FHGLSEIQADAILQMQLRRLTALEADKIRF 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++    DIL+ R R+L +IK+EL  + +  ++PRRT+I++    +ED D I  
Sbjct: 453 EHEDLVQKVNNYRDILAHRDRVLELIKEELKLLHNRYNSPRRTKILDLEGSLEDIDLIAN 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E  VV ++  GY+KR+P+S + A  RG +G++G   + ++ V      + H ++L FS  
Sbjct: 513 ERSVVLLTENGYLKRMPVSEFEATNRGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y    +R+P+ S  A+G  ++ IL + + E IT+++     E   N + ++  T  G
Sbjct: 573 GISYALPAYRVPVSSRSAKGTPVVQILPIPREEEITSLLSVSAFE---NEVQLLMLTNSG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAI 713
            ++R +LS F  I  +G IA+ L+  D +  V      + +L+ +  G  + F I    +
Sbjct: 630 FIKRTRLSAFSNIRSNGLIAINLELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEEL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GRN+ GVR ++L   D ++SM ++    AD                          
Sbjct: 690 RPL-GRNARGVRAMNLRDNDSLVSMDVLPAELADQV----------------------AN 726

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           S+ +       +             ++L  S  G GKR     FR+  R+G G+RA    
Sbjct: 727 SVDSGVEEREELGGGTGSASPAAGPWVLVASASGLGKRVPVNQFRLQRRAGMGLRAMRF- 785

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              +   LV +  +   ++++LVS+KG ++R+  + I   SRA  GV +      + +  
Sbjct: 786 -RRKGDVLVGLKVLGSREELLLVSEKGVIVRMQADLIPQQSRAATGVRLQKLDDGDHLAE 844

Query: 894 VERIRESEIVDEAES 908
           +  I      ++  +
Sbjct: 845 IVLIPHVLEEEDDPN 859



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 85/257 (33%), Gaps = 15/257 (5%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +   + +    R+  + ++    D    ++    E  ++L T+ G   R P+S       
Sbjct: 483 KLLHNRYNSPRRTKILDLEGSLED----IDLIANERSVVLLTENGYLKRMPVSEFEA-TN 537

Query: 719 RNSVGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R + G  G      + V   IS           D  I Y                     
Sbjct: 538 RGTRGKAGTKNQGDEGVKLFISCNDHDTLLLFSDRGISYALPAYRVPVSSRSAKGTPVVQ 597

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 E  I+          E  +L ++  GF KRT    F  SN    G+ A ++   
Sbjct: 598 ILPIPREEEITSLLSVSAFENEVQLLMLTNSGFIKRTRLSAF--SNIRSNGLIAINL--- 652

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVS 893
               AL  V      D +++ S +G  I   +   E+R   R  +GV   +   ++ +VS
Sbjct: 653 ELGDALRWVRLALPGDSVLIGSIQGMTIHFRIIDEELRPLGRNARGVRAMNLRDNDSLVS 712

Query: 894 VERIRESEIVDEAESTE 910
           ++ +        A S +
Sbjct: 713 MDVLPAELADQVANSVD 729


>gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
 gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3]
          Length = 813

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/899 (38%), Positives = 515/899 (57%), Gaps = 88/899 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+   + S   +   I +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSSD-VPSPNIDAARIDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + + GE MG YHPHG++AIYD L RM+QD+S+R  L++GQGNFGSV
Sbjct: 60  HEMGVSSRSAHRKSSSVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+   +  LL D+ K+TVDF  NYD   +EP VL A  PN+LVNG  
Sbjct: 120 DGDPAAAMRYTEARMSPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TN+P HNL EV+D  + +ID+P+  +  LME ++GPDFPTGA I+GR  I +A
Sbjct: 180 GIAVGMSTNVPPHNLREVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIVGREAIHSA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R     E+    RE+IV+TE+P+Q NK+ ++E+IAE V E +I  I+DLR
Sbjct: 240 YTTGRGRLRVRAEFEREQADK-RERIVITELPFQQNKSRLVERIAENVNEGKIEGISDLR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+ I+LKRGA+ADV+ NQL  +  L+  F V  +AL   +P+   L   L+ 
Sbjct: 299 DESDRDGIRIAIDLKRGANADVVENQLLEH-HLERTFGVINLALVDGQPQVLDLKETLEH 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R++VV RR++Y L +A DRAH+L G   A+ N+D VV +IR + +   A+  L   
Sbjct: 358 YVEHRKDVVRRRSEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEAL--- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE Q   I+ ++L  LT L R++I  E ++L
Sbjct: 415 -----------------------SDEFDFSEAQAEHIVRMQLGSLTSLERNEIDEEYDAL 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+    IL++ S LLG+IK+EL  +++E    RRT I+EG   +  ED I  ED ++
Sbjct: 452 VEEIERLETILANESELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEEDSLI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            V+   YVKR+P+S +  Q RGGKG  G  +++ D V+ +F  +TH  +L F++ G  Y+
Sbjct: 512 LVTEDDYVKRMPVSAFDPQGRGGKGIIGANLKEGDRVSKVFRANTHDYLLCFTNHGKAYQ 571

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            + + +P  S  ARGK+ +NIL L+  E +T ++   + +   +  ++   T++G V+R 
Sbjct: 572 IRGFDVPEMSRTARGKSAVNILDLDPDEELTAVVNTDDFD---DEEFLTMVTENGYVKRT 628

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           + S F ++  SG IA  L+  D ++ V       D+L+ T+ G  +RFP S  R   GR 
Sbjct: 629 EASAFERVRSSGLIAASLEEGDRLVDVTVTDGSADLLIATRNGMAIRFPESEARAM-GRT 687

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L  GD V+ +     + +                                  
Sbjct: 688 ARGVNGIKLQGGDSVVGLVTADESRS---------------------------------- 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LT++E G+GKRT   ++R  +R GKG+        N  G 
Sbjct: 714 -------------------LLTITENGYGKRTPFSEYRTQSRYGKGLIDIKTGNRN--GP 752

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           + AV  V+++D ++++SD   ++R+   ++    R TKGV++   A D+RV SV+ I E
Sbjct: 753 VAAVESVSEDDDLVVMSDDAQIMRIHAADVSRVGRNTKGVIVMRLAGDDRVASVDVIPE 811



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 11/224 (4%)

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D +L  +   +E+ ++L T+     R P+SA     GR   G+ G +L +GD+V  +  
Sbjct: 495 GDTVLHEDLIPEEDSLILVTEDDYVKRMPVSAFDP-QGRGGKGIIGANLKEGDRVSKVFR 553

Query: 741 VLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
               D      +    Y         +      +      D   +  ++     +    E
Sbjct: 554 ANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEELTAVVNTDDFDDE 613

Query: 798 QFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +F+  V+E G+ KRT +  F R+ +    G+ A  + + +    LV V   + +  +++ 
Sbjct: 614 EFLTMVTENGYVKRTEASAFERVRS---SGLIAASLEEGDR---LVDVTVTDGSADLLIA 667

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +  G  IR P +E R   R  +GV        + VV +    ES
Sbjct: 668 TRNGMAIRFPESEARAMGRTARGVNGIKLQGGDSVVGLVTADES 711



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 64/171 (37%), Gaps = 8/171 (4%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             ++      +  +     +    +    +  E       +S+         ++L  +E 
Sbjct: 449 DALVEEIERLETILANESELLGVIKEELREIREEYGDDRRTSIIEGGDTVLHEDLIPEED 508

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++ V+E  + KR     F    R GKGI   ++ + + +  +   F  N +D ++  ++
Sbjct: 509 SLILVTEDDYVKRMPVSAFDPQGRGGKGIIGANLKEGDRVSKV---FRANTHDYLLCFTN 565

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
            G   ++   ++   SR  +G   V I     DE + +V  +   +  DE 
Sbjct: 566 HGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEELTAV--VNTDDFDDEE 614


>gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
 gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972]
          Length = 878

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/839 (45%), Positives = 530/839 (63%), Gaps = 17/839 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLTEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+D+++ +IR +  P  A+  L+ R W   ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELQAVRDGYGDARRTEITAASHDIDLEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M+DED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L   ERIT I+P  E     ++ ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEDNERITAILPVTEFS---DDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +  +G IA+ L   D ++ V+    +++I+L +K G+ VRF    +R   GR + GVR
Sbjct: 663 SNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRAM-GRTASGVR 721

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L +GDQV+S+ IV   D D                     +     + +    E N 
Sbjct: 722 GMKLMEGDQVVSL-IVPKTDGDILTVTENGYGKRTVLAEYPAKSRATQGVVSIKVSERNG 780

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                 +    ++F + ++  G   RT   +     R+ +G+     S+      +V +
Sbjct: 781 RVVGAVQADEGDEF-MMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEDE---QVVGL 835



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 65/428 (15%), Positives = 147/428 (34%), Gaps = 29/428 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E ++ +R                  A
Sbjct: 469 EHEKILDEYKQLLEEIAELMHILASTERLMEVIREELQAVRDGYGDA-----RRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   DL +LI      +      Y+ + Q  +  E +     G     +++E     + +
Sbjct: 524 SHDIDLEELIAREDVVVTLSHEGYV-KYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
               D +   S      + ++  +     T R   IV  L   ++E             +
Sbjct: 583 ANTHDNILCFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  L  +   R  G     V +RD+D +  + I +  + ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLDQFSNVRSNG--LIAVNLRDDDSLIGVDITNGDSEIMLFSKSG 700

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V +    ++      A G   + ++  +Q                  +  ++  T++G 
Sbjct: 701 KVVRFNEDQVRAMGRTASGVRGMKLMEGDQ---------VVSLIVPKTDGDILTVTENGY 751

Query: 657 VRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  L+++   +R+ +  + +        ++      + ++ ++ T  G  VR  ++ +
Sbjct: 752 GKRTVLAEYPAKSRATQGVVSIKVSERNGRVVGAVQADEGDEFMMITNAGTLVRTRVAEV 811

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I  ++ +QV+ +  +   +            M+              
Sbjct: 812 -SQVGRNTQGVTLIRTSEDEQVVGLQRIEEIEESELLEGEEGSEMTENVDAAEAPAAPEA 870

Query: 774 SLKNDSSV 781
             + DS  
Sbjct: 871 PTEGDSEA 878


>gi|319440164|ref|ZP_07989320.1| DNA gyrase subunit A [Corynebacterium variabile DSM 44702]
          Length = 836

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/914 (37%), Positives = 513/914 (56%), Gaps = 93/914 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E     IT + +T+EM+NSY+ YA++VI+GRA+P++RDG+KPVHRR+++ M
Sbjct: 1   MSDDTNGGGETLFDRITPIDLTEEMRNSYIDYAMSVIVGRALPEVRDGMKPVHRRVIYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG+ AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 61  YDNGFRHDRGYVKSARPVAETMGHYHPHGDTAIYDTLCRMAQPWSMRYPLVDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECRL   A  ++ D+ ++TV+F PNYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDGPAAMRYTECRLTPLALEMVRDIRENTVNFSPNYDGKSQEPDVLPSRVPNLLMNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    +++NP+ D    L+A M+ ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLNELAEAIFWLLENPESDEQTALEACMQRVKGPDFPTAGLIVGDQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RG S IE+    R+ I++TE+PY VN   ++  IAE VR+ +I  I
Sbjct: 241 IKDAYTTGRGSIRMRGKSTIEEEGS-RQIIIITELPYMVNPDNLVSSIAEQVRDGKIAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 300 AKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDSVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QMLRLYVKHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDALDEVIALIRRSATVDIARE 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                     G    + + ++Q  AIL ++L RL  L R  I +
Sbjct: 420 --------------------------GLKDLLDIDDIQADAILAMQLRRLAALERQKIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +   IL+S  R   I++ EL  + ++    RRT IV    D+ +ED I R
Sbjct: 454 ELAEIEETIADLKAILASPERQRAIVRDELTEIVEKFGDERRTEIVGATGDVSEEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR+QRRGGKG  G  ++ +D V   F+ STH  ++F ++ 
Sbjct: 514 ENVVVTITSTGYAKRTKVDNYRSQRRGGKGVRGAELKQDDIVRHFFVCSTHDIIMFLTNY 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L    GE+I  I+     E   +  Y+V AT+ G
Sbjct: 574 GRVYRLKAYELPEASRTARGQHVANLLEFQPGEQIAEIIQIQSFE---DAPYLVLATQQG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+      G IA+ L+  D+++  + CT ++D+LL ++ GQ +RF      +
Sbjct: 631 RVKKSRLTDYDTARSGGLIAINLNEGDKLIGAQLCTGDDDLLLVSEEGQALRFTADDDTL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++++ +V                                
Sbjct: 691 RPM-GRATAGVKGMRFRGEDQLLALTVVHD------------------------------ 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  +  +L  +  G+GKRT   ++ +  R   G+      
Sbjct: 720 -----------------------DSCLLVATSGGYGKRTPMEEYPVKGRGTMGVVTFKYD 756

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V ++D+I  V+  G +IR  V +IR  SRAT GV +   AK   +++
Sbjct: 757 P--KRGKLIGAVTVTEDDEIFAVTSAGGIIRTEVGQIRKTSRATMGVRLVDLAKGVELLA 814

Query: 894 VERIRESEIVDEAE 907
           ++R  E E  + A+
Sbjct: 815 IDRNVEDEGEESAQ 828


>gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12]
 gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12]
          Length = 810

 Score =  827 bits (2137), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/892 (40%), Positives = 540/892 (60%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG + +IDNPDI    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG 
Sbjct: 182 NLGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I++ EIPYQ+NKA ++E+IA LV+EK+I  I DLRDES+R+G RVVIE
Sbjct: 242 VKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  ++  R +V+ RRT
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKILTLKQMLSEYIGHRFQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++             
Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS 
Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILELQDILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL VK+     RRT I E  +++  ED I  E+M++T ++ GY+KR+  
Sbjct: 456 DSKIYDIMKKELLEVKEVYGDNRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q RGGKG SG+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+
Sbjct: 516 NKYKSQNRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + NIL + + E+I  I+     +       ++F TK G V++  L +F  IN  G 
Sbjct: 576 RGRLISNILRIGEEEKIRAIIKTRIFD---KEKELIFVTKQGIVKKTSLEEFKNINTGGL 632

Query: 674 IAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K    D+++ V      +N++ + T+ G  VRFP   +R   GRN++GV+GI L + 
Sbjct: 633 IAIKFKEEDDLIYVGLVEASDNEVFIATRRGFAVRFPNDNVRP-TGRNTMGVKGIELREK 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  ++                                                   
Sbjct: 692 DEVVSALLI--------------------------------------------------- 700

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            K KE  ILT++E G+GKRT   ++   NR GKG+     ++  + G +V+V    D ++
Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCNE--KTGNIVSVLSAFDEEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  G +IR P++ I   SRA +GV+I   A DE+V S+ RI+  E  +
Sbjct: 758 LVCITSNGVIIRTPMHSISRFSRAAQGVIIMKVASDEKVASITRIKAEEKEE 809


>gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
 gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827]
          Length = 873

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/861 (44%), Positives = 540/861 (62%), Gaps = 20/861 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    SD    + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSV
Sbjct: 59  NVLGNDWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+ GC+A ID+ DI ++ LME I GPDFPT A+I GR GI +A
Sbjct: 179 GIAVGMATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDA 238

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG + IR  + +E      RE I+V+EIPYQVNKA ++EKIAELV+EKR+  I+ L
Sbjct: 239 YRTGRGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISAL 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ 
Sbjct: 299 RDESDKDGMRIVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIA 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AFV  R EVV RRT + L KAR+RAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ 
Sbjct: 359 AFVRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIA 418

Query: 420 RSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           R W+  ++  +++   D +             DG  YL+E Q +AIL+LRL +LTGL  +
Sbjct: 419 RPWDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHE 478

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            +  E   L  +I+E L IL S  RL+ +I++EL ++++  +  RRT I E   D+  ED
Sbjct: 479 KLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDARRTEITENTADINIED 538

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L 
Sbjct: 539 LISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILC 598

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G +Y  KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E E      YV  A
Sbjct: 599 FSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYE---EGYYVFMA 655

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G V++  L DF +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   
Sbjct: 656 TASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAED 715

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           A+R   GR + GVRGI LA  D+V+S+ I                  +A++   +     
Sbjct: 716 AVRPM-GRTATGVRGIRLADEDKVVSLIIPRGEGHILTVTENGYGKRTAEQEYPTK--SR 772

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
            T       V              +   I+ ++  G   RT   +  +  R+ +G+    
Sbjct: 773 ATQGVISIKVSERNGNVVGAIQVDETDQIMMITNAGTLVRTRVSEVSVVGRNTQGVTLIR 832

Query: 832 VSKINEIGALVAVFPVNDNDQ 852
            ++  +   +V +  V + ++
Sbjct: 833 TAEEEK---VVGLQRVAETEE 850



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 65/410 (15%), Positives = 142/410 (34%), Gaps = 35/410 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +  +  ++L      +  + E +  IR   N   ARR  +  +   
Sbjct: 476 EHEKLLEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYN--DARRTEITENTAD 533

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI   D            Y  LS+ + +       +       D I   L +   
Sbjct: 534 INIEDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTH 593

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+            
Sbjct: 594 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVRE-------Y 646

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+  L  +   R  G     +   DE    DL   +    V+ FS
Sbjct: 647 EEGYYVFMATASGTVKKTALQDFSRPRSAGIIAVNLNEGDELIGVDL--TNGSNEVMLFS 704

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V +     +      A G   +  + L   +++ +++            +++  T+
Sbjct: 705 AQGKVVRFAEDAVRPMGRTATG---VRGIRLADEDKVVSLI------IPRGEGHILTVTE 755

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R    ++   +R+ +  + +   +     +      + + I++ T  G  VR  +
Sbjct: 756 NGYGKRTAEQEYPTKSRATQGVISIKVSERNGNVVGAIQVDETDQIMMITNAGTLVRTRV 815

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           S +    GRN+ GV  I  A+ ++V+ +  V   + D +      + + +
Sbjct: 816 SEV-SVVGRNTQGVTLIRTAEEEKVVGLQRVAETEEDENSDEAGAEDIPS 864


>gi|255323998|ref|ZP_05365123.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
 gi|255298855|gb|EET78147.1| DNA gyrase, A subunit [Corynebacterium tuberculostearicum SK141]
          Length = 850

 Score =  827 bits (2136), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/915 (37%), Positives = 530/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNPD D    L+A ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWMLDNPDADEEAALEACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE++   R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVASGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y LN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVEHQIEVIVRRTQYRLNEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L +L  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRKLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I+  EL  + D+    RRT I+    D+ DED I R
Sbjct: 450 ELAEIEREIADLKDILAREERQRQIVHDELAEIVDKYGDERRTEIIPATGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   ARG+ + N+L     E+I  ++     E   +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPEGGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++SM++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVHDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT+  ++    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V+++D+I  ++  G +IR  V++IR +SRAT GV + + A D  +++
Sbjct: 753 P--KRGKLIGAISVDEDDEIFAITSAGGVIRTEVDQIRPSSRATMGVRLVNLADDVELLA 810

Query: 894 VERIRESEIVDEAES 908
           ++R  E +  ++A++
Sbjct: 811 IDRNVEEDGEEDAQA 825



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 93/250 (37%), Gaps = 13/250 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     + + + D +    +VS    +L
Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +          P  R  A +  +     +++ ++          +  +++ 
Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLSMSVV------HDGEFLLV 721

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R G   M       R +++   +  ++++I   T  G  +R
Sbjct: 722 ATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISVDEDDEIFAITSAGGVIR 781

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  IR  + R ++GVR ++LA   +++++   +  D + D +       +        
Sbjct: 782 TEVDQIRP-SSRATMGVRLVNLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840

Query: 768 DTEEITSLKN 777
              + +  + 
Sbjct: 841 KAGDASKDEE 850


>gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
 gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f]
          Length = 816

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/887 (40%), Positives = 507/887 (57%), Gaps = 91/887 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ Y KC+R+ G+VMG 
Sbjct: 1   MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++AIYD L R+AQ WSLR  L++G GNFGS   DPPAA RYTE R+   A  +L 
Sbjct: 61  YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ ++TVDF PNYDG   EP+VL +R+PN+LVNG GGIAVGMATNIP HNL EV  G   
Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180

Query: 205 VIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
            +D+PD     L+E    I++GPDFPT  +I+GR GI++AY TGRGSI +R V ++E+  
Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIVGRNGIEDAYRTGRGSIRMRAVVNVEENK 240

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGAS 319
             R Q+VVTE+PYQVN   + EKIAELVR+ +I  I+D+RDE S R G R+VI+LKR A 
Sbjct: 241 -GRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLKRDAV 299

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A V+LN LY++T LQ  F VNM+A+    P    L  I+  +V  + EV+VRRT+Y L K
Sbjct: 300 AKVVLNNLYKHTQLQDTFGVNMLAIVDGVPRTLRLDQIISYYVEHQIEVIVRRTRYQLRK 359

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR+R HVL GL IA+ +LDEV+ +IR + + + AR +LM+R                   
Sbjct: 360 ARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMER------------------- 400

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE+Q  AIL+++L RL  L R  I +E   L  ++ E   IL+S +R   
Sbjct: 401 -------FSLSEIQATAILDMQLRRLAALERQRIIDEAAELRAKVSELEAILASPARQRE 453

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II QEL  V ++    RRTR+V    DM  ED I RED+VVTV+  GY KR    +YR+Q
Sbjct: 454 IIGQELAEVVEKYGDERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQ 513

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGGKG  G  +R++D V   F+ +TH  +LFF++ G VY+ K   LP  +  A+G+ + 
Sbjct: 514 KRGGKGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 573

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           NIL+ +Q ERI  +M   + E      Y+V ATK G  ++  L+DF      G +A+ L 
Sbjct: 574 NILAFSQDERIAEVMAIQDYE---AAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLR 630

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVIS 737
             DE++S       +D+LL ++  Q +RF      +R   GR + GV G+     D+++S
Sbjct: 631 DDDELISARLVAPGDDLLLVSRNAQSIRFHADDEQLRPM-GRATSGVIGMRFDDSDELLS 689

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M +V+                                                       
Sbjct: 690 MDVVVPDTTAD------------------------------------------------- 700

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +L  +  G+ KRT   ++ +  R GKG+    +  ++  G LV    V  +DQ+  ++
Sbjct: 701 --LLVATSGGYAKRTPLAEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVAPDDQLYAIT 756

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             G ++R    ++R A R T GV +       +VV V R  ++   D
Sbjct: 757 SNGGVLRTVAKDVRRAQRQTMGVRLIDLEAGVQVVGVARNADANDSD 803



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 11/231 (4%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G  K+  L+ + + R GG     + +RD+D +    +V+    +L  
Sbjct: 593 YEAAPYLVLATKRGLCKKTALTDFDSNRAGG--LVAINLRDDDELISARLVAPGDDLLLV 650

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S      +       +  P  R  + +  +  +  + + ++     D        ++ AT
Sbjct: 651 SRNAQSIRFHADDEQL-RPMGRATSGVIGMRFDDSDELLSMDVVVPDT----TADLLVAT 705

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  L+++    R GK  +           +       ++ +   T  G  +R  
Sbjct: 706 SGGYAKRTPLAEYPVQGRGGKGVLTAKIVSTRGGLVGALVVAPDDQLYAITSNGGVLRTV 765

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
              +R    R ++GVR I L  G QV+ +A    A+              A
Sbjct: 766 AKDVRRAQ-RQTMGVRLIDLEAGVQVVGVARNADANDSDGSGENAGSDGPA 815


>gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563]
          Length = 811

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/886 (40%), Positives = 540/886 (60%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG + +IDNP+I    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG 
Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  +++ EIPYQ+NK+ ++E+IA LV+EK+I  I DLRDES+R+G RVVIE
Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  +++ R +V+ RRT
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++             
Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS 
Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSY 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+KQELL VKD     RRT I E  +++  ED I  E+M++T ++ GY+KR+  
Sbjct: 456 DNKIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q RGGKG +G+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+
Sbjct: 516 NKYKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + N+L + + E+I  I+     +       +VF TK G V++  L +F  IN  G 
Sbjct: 576 RGRLISNLLRIGEEEKIRAIIKTRVFD---KEKELVFVTKQGIVKKTSLEEFKNINTGGL 632

Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K    D+++ V      EN++ + T+ G  VRFP   +R   GRN++GV+GI L +G
Sbjct: 633 IAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELREG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  ++                                                   
Sbjct: 692 DEVVSALLI--------------------------------------------------- 700

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            K KE  ILT++E G+GKRT   ++   NR GKG+     ++  + G +V+V    D ++
Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCNE--KTGNIVSVLTALDEEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++  G +IR P+N I   SRA +GV+I   A DE+V S+ RI+
Sbjct: 758 LVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803


>gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
 gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R]
          Length = 811

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/886 (40%), Positives = 540/886 (60%), Gaps = 85/886 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I++  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNISNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y+ + RMAQ+++ R +L+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL+D+ K+T+DFR N+D S  EP VL ++ P++L+NG  GIAVGMATNIP H
Sbjct: 122 RMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG + +IDNP+I    LME I+GPDFPTG +I G+ GI++AY TGRG I +RG 
Sbjct: 182 NLGELVDGSLQLIDNPEISDLELMEYIKGPDFPTGGIIDGKKGIRDAYLTGRGKIRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  +++ EIPYQ+NK+ ++E+IA LV+EK+I  I DLRDES+R+G RVVIE
Sbjct: 242 VKIEENKNGKFFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+G   +++LN+LY+YT LQS F V M+AL    P+  TL  +L  +++ R +V+ RRT
Sbjct: 302 LKKGEEPELVLNKLYKYTELQSTFGVIMLALVNNVPKVLTLKQMLCEYISHRFQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA+ RAH+L G  IA+ N++ ++ +IR S +   A+ +L+++             
Sbjct: 362 LFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E+Q ++IL++RL RLTGL R+ +  E   L   I E  DILS 
Sbjct: 409 -------------YAFTEIQAKSILDMRLQRLTGLEREKVEAEYQDLEKLIIELQDILSH 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +++  I+KQELL VKD     RRT I E  +++  ED I  E+M++T ++ GY+KR+  
Sbjct: 456 DNKIYDIMKQELLKVKDTYGDKRRTHIEEERMEILPEDLIKDEEMIITCTNKGYIKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + Y++Q RGGKG +G+   D+D V  +   S   +++ F+  G VY  KV++LP  S Q+
Sbjct: 516 NKYKSQNRGGKGVTGLNTIDDDVVDTILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + N+L + + E+I  I+     +       +VF TK G V++  L +F  IN  G 
Sbjct: 576 RGRLISNLLRIGEEEKIRAIIKTRVFD---KEKELVFVTKQGIVKKTSLEEFKNINTGGL 632

Query: 674 IAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           IA+K    D+++ V      EN++ + T+ G  VRFP   +R   GRN++GV+GI L +G
Sbjct: 633 IAIKFKEEDDLIYVGLVEAAENEVFIATRKGFAVRFPNDNVRP-TGRNTMGVKGIELREG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S  ++                                                   
Sbjct: 692 DEVVSALLI--------------------------------------------------- 700

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            K KE  ILT++E G+GKRT   ++   NR GKG+     +  ++ G +V+V    D ++
Sbjct: 701 -KEKEMDILTITENGYGKRTRLDEYPSHNRGGKGVINLRCN--DKTGNIVSVLTALDEEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++  G +IR P+N I   SRA +GV+I   A DE+V S+ RI+
Sbjct: 758 LVCITSNGIIIRTPMNSISRFSRAAQGVIIMKVALDEKVASITRIK 803


>gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
 gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC
           27817]
 gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC
           27819]
 gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC
           33695]
 gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC
           33696]
 gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC
           33175]
 gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC
           27816]
 gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC
           27618]
          Length = 844

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/898 (39%), Positives = 509/898 (56%), Gaps = 87/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   + G+  +K Y
Sbjct: 21  EGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPY 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD  AA RYT
Sbjct: 81  KKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  GIAVGMATNIP
Sbjct: 141 EARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV     A   N DI +  +ME ++GPDFPTGA I G +GI N + TGRGS+ IR
Sbjct: 201 PHNLTEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE     R  IVVTEIPY VNK  ++EKI ELV  K+I  I+DLRDES R G R+V
Sbjct: 261 SKYEIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR    +V+LN+L++ T+LQ+ FSVN +AL    P    +  ++K +   + EV+VR
Sbjct: 321 IEVKRDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R           
Sbjct: 381 RTKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+QT+AILE+RL  LTGL  D ++ E   L + IK+  DIL
Sbjct: 430 ---------------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIKDLEDIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
            +  R + II + L  + ++    RRT I+ G+    +DED I  ED+VVT+S  GY KR
Sbjct: 475 ENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+ +   +P+GS
Sbjct: 535 LPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGS 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G   IN L + + E I TI+P            + F T  G ++R  LSDF  I  
Sbjct: 595 RQSKGIPAINFLPIEKSESILTILPIDNY----EQGSLFFTTSKGIIKRANLSDFESIRA 650

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   D++ SV      +++ +    G  +RF  +  R   GR + GV+GI+L 
Sbjct: 651 NGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLE 709

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V+   +  H +                                             
Sbjct: 710 DDEYVVGTGLSSHGE--------------------------------------------- 724

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   ++L V  KG GK T   D+R++ R  KG+    V+     G LV++  VN +
Sbjct: 725 --------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDR--TGNLVSIKVVNRD 774

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++ ++++  G +IR+ + +I +  R T GV + S    E V S+   ++ EI D  + 
Sbjct: 775 EEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDDNDDE 832



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 15/221 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +KR  LS + + R  GK    + +++ D +  +     +  V   +S G V +  
Sbjct: 632 TSKGIIKRANLSDFESIRANGKI--AITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFN 689

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                     A G   IN+                    S +  YV+     G  +   +
Sbjct: 690 ENDAREMGRIATGVKGINLEDDEY---------VVGTGLSSHGEYVLAVGSKGLGKLTDI 740

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +D+    R  K    L   D     +S++   ++ + L+ T  G+ +R  I  I    GR
Sbjct: 741 NDYRLTKRGAKGVNTLKVNDRTGNLVSIKVVNRDEEALIITTSGKVIRLSIQDI-SVIGR 799

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           N+ GV+ ISL   ++V S+AI    + D ++      H + 
Sbjct: 800 NTSGVKLISLENKEEVKSIAIFKKEEIDDNDDEQQTSHGNE 840


>gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 847

 Score =  827 bits (2135), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/885 (41%), Positives = 532/885 (60%), Gaps = 69/885 (7%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M +MG +WNK Y K ARI G V+GK
Sbjct: 17  LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YDA+ RMAQ++SLR  LI+GQGNFGSVDGD  AA RYTE RL K +H +L 
Sbjct: 77  YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL KDTV++  NYD +   P V+  + PN+L+NG  GIAVGMATNIP HN+GE+++ C+A
Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263
            +DN +I +  LM+ + GPDFPT  +I G  GI++AY+TGRG I IR  S I       R
Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIKGIEDAYSTGRGKIYIRANSKIISDNKTKR 256

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E I++ EIPYQVNK  ++EKIA+LV+EK+I  I+ LRDESDR G R+V+E+KR    +++
Sbjct: 257 ESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIKRDHIGEIV 316

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY  T LQ  F +NMVAL   +P+  +L  IL  F+  R  ++ R+T + L K   R
Sbjct: 317 LNNLYSMTQLQISFGINMVALCYGQPKTLSLKKILSYFLYHRRVIITRKTNFELKKIYYR 376

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID---------LI 434
            ++L    IA+ N+D V+ +I+ S + E A+ +L+   W+ ++I  +++           
Sbjct: 377 LNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFFSKK 436

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
              +         ++S+ Q +AIL+LRL +L  L    +  E   L  +  +   IL   
Sbjct: 437 QKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKILKYP 496

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L   IK+ELL +K E +  RRT+I++  +++  ED I ++D++VT+SH GYVK  PL 
Sbjct: 497 DELTNSIKKELLILKQEYNDKRRTKIIKKPVNINIEDLINQKDVIVTLSHQGYVKYQPLK 556

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y AQ RGGKG+S   ++++DF+    + +TH S+L FSS G VY  K+++LP  S  + 
Sbjct: 557 DYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVYWMKIFQLPENSRGSI 616

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GK +IN+L L   E IT I+PF + E     LYV  AT  G V++  L +F +   SG I
Sbjct: 617 GKPIINLLPLESKEYITAILPFRKYE---KKLYVFMATASGIVKKTALHEFSRPRSSGII 673

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+S D+++  +      + +L ++ G+ VRFP + +R   GR + GV+GISL  GD+
Sbjct: 674 AVNLNSGDKLIGADLTDGSQEAMLFSEYGKVVRFPENQVRNM-GRAASGVKGISLIPGDR 732

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S+ I  +                                                   
Sbjct: 733 VVSLIIPKNNSP------------------------------------------------ 744

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                ILTV++ G+GKRT   ++   +R+ +G+ +  VSK N  G +V    VND DQI+
Sbjct: 745 -----ILTVTQYGYGKRTVQSEYPTKSRAIQGVISIKVSKRN--GKVVGAVQVNDYDQIM 797

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++D GTL+R+ V+E+ I  R T GV +   + +  VV ++R+ E
Sbjct: 798 IITDSGTLVRIRVSEVSIVGRNTHGVRLIRISNNNNVVGLQRVVE 842


>gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61]
 gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3]
 gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52]
 gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426]
 gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61]
 gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3]
 gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52]
          Length = 818

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/843 (42%), Positives = 519/843 (61%), Gaps = 32/843 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    +E I+VTE+PYQVNKA ++E+IAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY++T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKHTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMAR--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLVRLIAELRG 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G +   +DED I +E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVSGAVEQFDDEDLIPQEHVVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTAEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P   +    +  Y+VFATK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPIESE--FSDERYLVFATKQGIAKRSPLSAFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISVRLTDGKKHLIIGTKNGMLIRFPETDVRAM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+ M I+                 +                  + + +      
Sbjct: 694 LDDGDEVVGMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTDKNGPVVA 753

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++  ++ ++  G   R +  D   + R  +G++   +S  +    +  V  V 
Sbjct: 754 VTTVVGNED--VMVITTGGVLIRIAVSDISRTGRIAQGVKLIRLSGEDGHECVATVAKVP 811

Query: 849 DND 851
           + +
Sbjct: 812 EEE 814


>gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
 gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC
           33698]
 gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC
           33699]
 gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC
           27814]
          Length = 844

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/898 (39%), Positives = 509/898 (56%), Gaps = 87/898 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   + G+  +K Y
Sbjct: 21  EGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPY 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD  AA RYT
Sbjct: 81  KKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  GIAVGMATNIP
Sbjct: 141 EARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV     A   N DI +  +ME ++GPDFPTGA I G +GI N + TGRGS+ IR
Sbjct: 201 PHNLTEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIYGDSGIINYFNTGRGSVTIR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE     R  IVVTEIPY VNK  ++EKI ELV  K+I  I+DLRDES R G R+V
Sbjct: 261 SKYEIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR    +V+LN+L++ T+LQ+ FSVN +AL    P    +  ++K +   + EV+VR
Sbjct: 321 IEVKRDVIPEVLLNKLFKTTALQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEVLVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTK+ L KA++R H++ GL IAV N+DEV++II+ S + + A + L+ R           
Sbjct: 381 RTKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIAR----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+QT+AILE+RL  LTGL  D ++ E   L + I++  DIL
Sbjct: 430 ---------------FGLTELQTKAILEMRLRALTGLNIDKLKKEYEDLLLIIEDLEDIL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
            +  R + II + L  + ++    RRT I+ G+    +DED I  ED+VVT+S  GY KR
Sbjct: 475 ENYDRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+ +   +P+GS
Sbjct: 535 LPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGS 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G   IN L + + E I TI+P            + F T  G ++R  LSDF  I  
Sbjct: 595 RQSKGIPAINFLPIEKSESILTILPIDNY----EQGSLFFTTSKGIIKRANLSDFESIRA 650

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   D++ SV      +++ +    G  +RF  +  R   GR + GV+GI+L 
Sbjct: 651 NGKIAITLKEGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLE 709

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V+   +  H +                                             
Sbjct: 710 DDEYVVGTGLSSHGE--------------------------------------------- 724

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   ++L V  KG GK T   D+R++ R  KG+    V+     G LV++  VN +
Sbjct: 725 --------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVNDR--TGNLVSIKVVNRD 774

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++ ++++  G +IR+ + +I +  R T GV + S    E V S+   ++ EI D  + 
Sbjct: 775 EEALIITTSGKVIRLSIQDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEIDDNDDE 832


>gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
 gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31]
          Length = 812

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/884 (40%), Positives = 542/884 (61%), Gaps = 86/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNFIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R+VIE
Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R EV+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFEVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q R+IL+++L RLTGL R+ I NE   +   IKE  ++L+ 
Sbjct: 409 -------------YGFTDIQARSILDMKLQRLTGLEREKIDNEYKEIEALIKELREVLAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            S++  I+K+ELL +K++ +  RRT+I E  +++  ED I  E++++T ++ GYVKR+  
Sbjct: 456 NSKIYEIMKKELLELKEKYNDKRRTQIEEERMEILPEDLIKDEEIIITYTNKGYVKRIEA 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y+AQRRGG+G S +   ++D+   +   ST  +++ F+  G VY  + + +P  S Q+
Sbjct: 516 SKYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQS 575

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+ + NI++L++GE++   +   E         +VF TK+G +++  L +F  IN SG 
Sbjct: 576 RGRLIGNIINLSEGEKVRDTIVIKEFVPEKE---IVFITKNGLIKKTSLGEFKNINNSGL 632

Query: 674 IAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           IA+K+   D+I+ V       + +IL+ T  G C RF    IR   GR++ GV+ I+L +
Sbjct: 633 IAIKIKEDDDIIFVGLIEDVTKEEILIATHDGYCTRFLTDTIRP-TGRSTQGVKAITLRE 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+S  ++ +                                                
Sbjct: 692 GDAVVSAMLIKN------------------------------------------------ 703

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                E  ILT++E G+GKRTS  ++   NR GKG+     S+  + G +V+V  V +++
Sbjct: 704 ----PETDILTITENGYGKRTSLDEYPQYNRGGKGVINLKASE--KTGKVVSVLEVTEDE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++ ++  G +IR  ++EI    RAT+GV I   A +E+V ++ 
Sbjct: 758 ELMCITSNGIVIRTSISEISRIGRATQGVRIMKVADEEKVAAIT 801


>gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A
 gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] -
           Ureaplasma urealyticum
 gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum
           serovar 3 str. ATCC 700970]
 gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC
           33697]
 gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 840

 Score =  826 bits (2134), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/895 (39%), Positives = 512/895 (57%), Gaps = 87/895 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I   SIT E++ S+L Y+++VI+ RA+PD+RDG KPVHRR LF   + G+  +K Y
Sbjct: 21  EGSTIKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPY 80

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  G+V+GKYHPHG+ A+Y  + RMAQD+S+R LL++G GNFGS+DGD  AA RYT
Sbjct: 81  KKSARWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYT 140

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K ++ LL  + K+TVDF PNYD S QEP VL + +PN+L NG  GIAVGMATNIP
Sbjct: 141 EARLSKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIP 200

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV     A   N ++ +  +ME ++GPDFPTGA I G +GI   + TGRGS+ IR
Sbjct: 201 PHNLTEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE     R  IVVTEIPY VNKA ++EKI ELV  K+I  I+DLRDES R G R+V
Sbjct: 261 SKYEIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIV 320

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR    +V+LN+L++ T LQ+ FSVN +AL    P    +  ++K +   + E++VR
Sbjct: 321 IEVKRDVIPEVLLNKLFKTTPLQTNFSVNNLALVNGVPMVLNIKEMIKYYFEHQIEILVR 380

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA++R H++ GL IAV N+DEV++II+ S + + A + L+QR           
Sbjct: 381 RTNFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQR----------- 429

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+QT+AILE+RL  LTGL  D ++ E   L + IK+  D+L
Sbjct: 430 ---------------FDLTELQTKAILEMRLRALTGLNIDKLKKEYEDLILVIKDLEDVL 474

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           ++ +R + II + L  + ++    RRT I+ G+    +DED I  ED+VVT+S  GY KR
Sbjct: 475 NNYNRQVNIICENLDYLIEKFGDERRTEIMYGVSSHIDDEDLIPVEDIVVTMSKRGYFKR 534

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+ QRRGG G  G+   ++D V  + + +THT +LFFS LG VY+ +   +P+GS
Sbjct: 535 LPIDTYKNQRRGGVGVQGLKTYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGS 594

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G   IN L + + E I TI+P        +   + F T  G ++R  LSDF  I  
Sbjct: 595 RQSKGIPAINFLPIEKSESILTILPIDNY----DQGSLFFTTSKGIIKRANLSDFESIRA 650

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA+ L   D++ SV      +++ +    G  +RF  +  R   GR + GV+GI+L 
Sbjct: 651 NGKIAITLKDGDKLFSVMQTLGNDEVFIGASNGNVIRFNENDAREM-GRIATGVKGINLE 709

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + V+   +  H +                                             
Sbjct: 710 NDEYVVGTGLSSHGE--------------------------------------------- 724

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   ++L V  KG GK T   D+R++ R  KG+    V+  ++ G LV++  VN  
Sbjct: 725 --------YVLAVGSKGLGKLTDINDYRLTKRGAKGVNTLKVN--DKTGNLVSIKVVNRE 774

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++ ++++  G +IR+ + +I +  R T GV + S    E V S+   ++ EI DE
Sbjct: 775 EEALIITTSGKVIRLSIKDISVIGRNTSGVKLISLENKEEVKSIAIFKKEEINDE 829


>gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
 gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 886

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/909 (38%), Positives = 513/909 (56%), Gaps = 97/909 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 20  ERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 80  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 140 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 200 NMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 259

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 260 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 318

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 319 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEV 378

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 379 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 428

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L  +I +  
Sbjct: 429 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 472

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 473 DILAKPERQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 532

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 533 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 592

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  +      Y+V AT+ G V++  L+++   
Sbjct: 593 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYDV---AKYLVLATRSGKVKKTALAEYDSP 649

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L +       DE++    C  ++DI+L +K G  ++F  +   +R   GR 
Sbjct: 650 RQGGLIAVRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPM-GRQ 708

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+    GD++++M +V                                       
Sbjct: 709 TAGVQGMKFRDGDELLAMDVVQ-------------------------------------- 730

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 731 -------------GDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGS 775

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V ++DQI+ +   G +IR  V E++   R T+GV +    K++ ++S+ R  E+
Sbjct: 776 LVGAVIVEESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEET 835

Query: 901 EIVDEAEST 909
           +  D  ++ 
Sbjct: 836 DEDDAEQAA 844


>gi|172039690|ref|YP_001799404.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
 gi|171850994|emb|CAQ03970.1| DNA gyrase subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 838

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/903 (37%), Positives = 502/903 (55%), Gaps = 94/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D      I  + +  EMQNSY+ YA++VI+GRA+P++RDG+KPVHRRIL+ M
Sbjct: 1   MSDDTNGGDNLF-DRIEPIDLQKEMQNSYIDYAMSVIVGRALPEVRDGMKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   E MG YHPHG++AIYD L RMAQ WS+R  L++GQGNFGS 
Sbjct: 60  FDNGHRPERGYVKSAKPVAETMGNYHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECRL   A  ++ D+ +DTV F+PNYDG   EP VL +R PN+L+NG G
Sbjct: 120 GNDGAAAMRYTECRLTPLAMEMVRDIREDTVVFQPNYDGKTSEPTVLPSRVPNLLMNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    +++NP+ +        M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLNELADAIYWLLENPEAEEAEALEACMGFVKGPDFPTAGLIVGEKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RG + IE+    R+ IV+TE+PYQVN   ++  IAE VR+ ++  I
Sbjct: 240 IDDAYRTGRGSIRMRGKAEIEEEGS-RQVIVITELPYQVNPDNLVSSIAEQVRDGKLKGI 298

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 299 SKIDDESSDRVGLRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +V  + +V+VRRT++ L KA + AH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 359 QMLSLYVKHQIDVIVRRTQFRLRKAEEDAHILRGLVKALDALDEVIALIRNSATVDIARE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL ++L RL  L R  I +
Sbjct: 419 GLM--------------------------DLLTVDEIQANAILAMQLRRLAALERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  L   I +  DIL+   R   I++ EL  + ++    RRT+IV    D+ +ED I R
Sbjct: 453 QLAELERIIADLEDILAKPERQRAIVRDELAEIVEKYGDERRTQIVSATGDVSEEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR QRRGGKG  G  +R +D V   F+ STH +VLFF+++
Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRNQRRGGKGVRGAELRQDDVVRHFFVCSTHDTVLFFTNM 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +Y+ K + LP  +  ARG+ + N+L    GE+I  ++     E   +  Y+V AT  G
Sbjct: 573 GRMYRLKTYELPEATRTARGQHVANLLEFQPGEQIAQVIQIQSFE---DAPYLVLATAQG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     SG IA+ L+  D+++  + C+ E+D+LL ++ GQ +RF      +
Sbjct: 630 RVKKSRLTDYATTRSSGLIAINLNEGDKLIGAQLCSAEDDLLLVSEEGQAMRFTADDETL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+     DQ+++M +V                                
Sbjct: 690 RPM-GRATAGVYGMRFRGEDQLLAMTVV-------------------------------- 716

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 ++  +   +  G+GKRT   ++    R G G+ A    
Sbjct: 717 ---------------------QEDSALFVATSGGYGKRTPMEEYPAKGRGGLGVVAFKYQ 755

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           K    G L+    V ++D+I+ ++  G +IR  VN+IR   R+T GV +    K   +V+
Sbjct: 756 K--SRGKLIGALTVTEDDEILAMTSAGGVIRTEVNQIRETGRSTMGVRLVDLDKGVELVA 813

Query: 894 VER 896
           V+R
Sbjct: 814 VDR 816


>gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
 gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 856

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/902 (40%), Positives = 545/902 (60%), Gaps = 88/902 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  ++I D +++SYL Y+++VI+GRA+PD +DGLKPVHRRILF M  + +     Y
Sbjct: 6   ENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSARAPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  LI+GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R  K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG  GIAVGMAT IP
Sbjct: 126 ESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMATKIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++D  + ++DNP+   D LME I+GPDFPTG  I GR GI +AY TGRG + IR
Sbjct: 186 PHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              HIE   G +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR G RVV
Sbjct: 246 AKHHIET-RGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A +++++N LY+ T +++ F + ++A+   +P+ FTL  +L  F++ R+ V++R
Sbjct: 305 IELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLNVFISHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  R           
Sbjct: 365 RTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELR----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS +Q++AIL++RL RLTGL RD +  E   L   I E   IL
Sbjct: 414 ---------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S  +L+ IIK+EL  ++++  + R T I +   +++ ED I  E MVVT++H GYVKRV
Sbjct: 459 KSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y  KV+R+P GS 
Sbjct: 519 PIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I  I+P  + +    +  + F T++G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLRPDEKIMEIIPTSDFD---ESKSLAFFTRNGVVKRTSLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  DEI++ +  T     +++ T LGQC+RF +   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QGRSTRGVRGIKFK 694

Query: 731 KG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+   +V + +                                            
Sbjct: 695 HDTDFVVDANVVDNIE-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   Q +LTVS+KG GKRT+  ++R +NR+G G+ +  +S   + G +V    V++
Sbjct: 711 --------QELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--KTGNVVGAVLVDE 760

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD-EAES 908
              +++++  G +IRV +  IR A R T GV+I +    ++VVS+ +  + +  + + E+
Sbjct: 761 AQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKCPKEDDDELDIEN 820

Query: 909 TE 910
            +
Sbjct: 821 AD 822


>gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578]
          Length = 809

 Score =  826 bits (2133), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/889 (39%), Positives = 504/889 (56%), Gaps = 86/889 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  V I +E++ SYL YA++VI+ RA+PD+RDGLKPV RRIL+ M +MG+  ++ + 
Sbjct: 5   KGKVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K  RI G+V+GKYHPHG+ +IYDAL R+AQ++S+R  ++ GQGNFGS+DGDPPAA RYTE
Sbjct: 65  KSGRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A  +L D+ K+TVDF PNYD S +EP VL A  P +L+NG  GIAVGMATNIP 
Sbjct: 125 AKLHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV     AVIDNP+I    L+  ++GPDFPTG +I G+ GI++AY TG+G +V+R 
Sbjct: 185 HNLGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIFGKKGIRSAYLTGKGGVVVRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E     RE IVVTEIPY VNK+++LE++A LVR+K+I  I+++RDESDR G R+V 
Sbjct: 245 RLSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVF 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG    V++N+L+  T LQ+ F VN +AL G KP+  TL  I++ F++ R+EVV RR
Sbjct: 305 ELKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGKPQTLTLKEIIQHFISHRKEVVTRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L KA +RAH+L GL IA+ N+DEV+ II+ S   ++AR  LM+R            
Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++RL +LT L    I  EL +    I+E  ++L 
Sbjct: 413 --------------FGLSERQAQAILDMRLQKLTSLETRKIIEELEATLKLIEELKELLG 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S  ++L ++K E L +       RRT IV E   D++ ED I +EDMVV VS  G +KR+
Sbjct: 459 SERKILEVVKNETLELAKGYGDERRTEIVAEEAEDLDIEDLIQKEDMVVLVSRDGLIKRM 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S YR Q RGGKG  G  +  +D V+ LF+ STH  +LF S+ G  Y  KV  +P GS 
Sbjct: 519 PVSAYRRQGRGGKGLMGGKLSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++GK++ +++ L+  E+++ ++     E       V   T  G  +R  +         
Sbjct: 579 VSQGKSIRSLVQLSPDEQVSAVVSVETFE---EEREVFMITAKGLAKRLPVPALSNARTR 635

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L+  D ++       + ++++ T+ G  +R      R   GR + GV  + L  
Sbjct: 636 GVIAIGLEKGDYLVDAFLTEGKGEVMIVTRRGHGLRCKEEEFRSM-GRAARGVTAVKLEP 694

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V     V                                                  
Sbjct: 695 GDEVCGAVPV-------------------------------------------------- 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               + + +L V+  G+GKR     F    R  KG     VS     G L AV  V   D
Sbjct: 705 ---EEGKDLLLVTSGGYGKRVGFSQFTAHGRGTKGQIVYKVSAR--TGELAAVLSVEAKD 759

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +++V+ +G +I++ V +I +  R   GV + +  K + VVSV+R+   
Sbjct: 760 DVMIVTAQGNIIKLAVKDISVLGRQAAGVKVVNLEKPDYVVSVDRVARE 808



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 95/241 (39%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD+ DE++++   ++  D   + +     RF +S       R +  +  + L K   +
Sbjct: 384 IALDNIDEVIAIIKKSRTVD---SARNNLMRRFGLSE------RQAQAILDMRLQKLTSL 434

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-------TSLKNDSSVEGNISEE 788
            +  I+   +A         + + ++R+++     E           +    V     + 
Sbjct: 435 ETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGYGDERRTEIVAEEAEDL 494

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPV 847
             ++L  KE  ++ VS  G  KR     +R   R         +        +V+ +F  
Sbjct: 495 DIEDLIQKEDMVVLVSRDGLIKRMPVSAYRRQGR----GGKGLMGGKLSGDDVVSHLFVA 550

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIVD 904
           + +D I+ +S++G    + V+EI   SR ++G     +   + DE+V +V  +   E   
Sbjct: 551 STHDYILFLSNEGKAYYLKVHEIPEGSRVSQGKSIRSLVQLSPDEQVSAVVSVETFEEER 610

Query: 905 E 905
           E
Sbjct: 611 E 611


>gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
 gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM
           30120]
          Length = 867

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/851 (44%), Positives = 536/851 (62%), Gaps = 18/851 (2%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK 
Sbjct: 3   EIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV++GC+A I++ DI ++ LME I GPDFPT A+I GR GI +AY TGRG + I
Sbjct: 183 PPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIIDAYRTGRGKVYI 242

Query: 251 RGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R  + +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R
Sbjct: 243 RARAEVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV
Sbjct: 303 IVIEVKRDAVGEVVLNNLYSLTQLQVSFGINMVALHQGQPKILNLKDIIAAFVRHRREVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+ RSW   ++  
Sbjct: 363 TRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAA 422

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             +G  +L+E Q +AIL+LRL +LTGL  + +  E   L 
Sbjct: 423 MLERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELL 482

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I+E L IL S  RL+ +I++EL +++D  + PRRT I E   D+  ED I +ED+VVT
Sbjct: 483 KQIEELLFILRSPERLMEVIREELEAIRDAYNDPRRTEITENTADINIEDLINQEDVVVT 542

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  
Sbjct: 543 LSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRLYWM 602

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP  S  ARG+ ++N+L L Q ERIT I+P  E E      YV  AT  G V++  
Sbjct: 603 KVYQLPEASRGARGRPIVNLLPLEQDERITAILPVREYE---EGYYVFMATASGTVKKTP 659

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L DF +   +G IA+ L+  DE++ V+     N+++L +  G+ VRF   A+R   GR +
Sbjct: 660 LQDFSRPRSAGIIAVNLNEGDELIGVDLTNGSNEVMLFSAQGKVVRFAEDAVRAM-GRTA 718

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI L   D+V+S+ I                  + +    +        +    S 
Sbjct: 719 TGVRGIKLMDNDKVVSLIIPRGEGHILTVTENGFGKRTEEAEYPTKSRATQGVISIKVSE 778

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                    Q     +  I+ +++ G   RT   +  +  R+ +G+     ++  +   +
Sbjct: 779 RNGHVVGAIQVEDTDQ--IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDEK---V 833

Query: 842 VAVFPVNDNDQ 852
           V +  V + + 
Sbjct: 834 VGLQRVAETED 844



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 65/419 (15%), Positives = 140/419 (33%), Gaps = 35/419 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +  +   +L      +  + E +  IR + N    RR  +  +   
Sbjct: 470 EHEKLLEEYRELLKQIEELLFILRSPERLMEVIREELEAIRDAYN--DPRRTEITENTAD 527

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            +I+DLI+  D            Y  LS+ + +       +       D I   L +   
Sbjct: 528 INIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTH 587

Query: 483 E---------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           +             + +        G   + ++++       R T I+            
Sbjct: 588 DTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITAILPVRE-------Y 640

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                V   +  G VK+ PL  +   R  G     +   DE    DL   +    V+ FS
Sbjct: 641 EEGYYVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNEGDELIGVDL--TNGSNEVMLFS 698

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V +     +      A G   I ++  ++                    +++  T+
Sbjct: 699 AQGKVVRFAEDAVRAMGRTATGVRGIKLMDNDK---------VVSLIIPRGEGHILTVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +G  +R + +++   +R+ +  + +        ++        + I++ T  G  VR  +
Sbjct: 750 NGFGKRTEEAEYPTKSRATQGVISIKVSERNGHVVGAIQVEDTDQIMMITDAGTLVRTRV 809

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           S +    GRN+ GV  I  A+ ++V+ +  V   + D +     +         +  + 
Sbjct: 810 SEV-SVVGRNTQGVTLIRTAEDEKVVGLQRVAETEDDENTDEDGIDVDGDVDTSVDTEE 867


>gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
 gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015]
          Length = 867

 Score =  825 bits (2132), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/839 (44%), Positives = 527/839 (62%), Gaps = 15/839 (1%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K +  +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   DFAKEVFPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKS 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARIVGDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH +L D+ K+TVDF  NYDGS  EP V   R P +LVNGG GIAVGMATNI
Sbjct: 123 TEVRMAKLAHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ EV+DGCVA+ID P++D+  LME I GPDFPT  +I G  GI+ AY TGRG I +
Sbjct: 183 PPHNINEVIDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGARGIREAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E+    +  IVVTEIPYQVNKA +LEKIAELV+EK+I  I  LRDESD+ G R+
Sbjct: 243 RARASVEEDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+RG   +VILN LY  T LQ++F +NMVAL+  +P    L  +L+AF+A R EVV 
Sbjct: 303 VIELRRGEVGEVILNNLYAQTQLQTVFGINMVALDKGQPRLMNLKQVLEAFIAHRREVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KAR+R H+L GLA+A++N+D ++ +I+ S NP  AR++L+   W    +  +
Sbjct: 363 RRTLYELRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGM 422

Query: 431 IDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
           ++     +             D   +LS  Q +AIL+L+L RLTGL +D I  E   L  
Sbjct: 423 LERAGADATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLE 482

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E L+IL +  RL  +++ EL+ ++D     RRT I +   D+  ED I  +D+VVT+
Sbjct: 483 KIAELLNILRNPDRLTEVVRDELVELRDSYGDERRTEIYQNQSDLTVEDLINEQDVVVTL 542

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY K  PL  Y+AQ+RGG+GRS   M+DEDF+  LF+  TH ++L FSS G VY +K
Sbjct: 543 SHAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYWKK 602

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ LPIGS  ARGK ++N+L L +GERI+ ++P  E     ++ +V  AT +G V+R  L
Sbjct: 603 VYELPIGSRNARGKPIVNLLPLEEGERISAVLPVREFT---DDEFVFMATANGTVKRTAL 659

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F +   +G IA+ +   D ++ V     + DI+L    G+ +RF    +R   GR + 
Sbjct: 660 SNFSRPRSNGIIALDIRDGDRLVGVARTDGQRDIMLFADSGKAIRFNEQDVRPM-GRTAA 718

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L+    ++ + IV   D        Y K  + +     G           S   
Sbjct: 719 GVRGIRLSDEQTMVGLIIVEDGDILTATVNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRN 778

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           G +           E  I+ +S  G   RT+  D  + +R+ +G+R   +    ++  L
Sbjct: 779 GGVV---GAVQVATEDEIMLISNGGVLVRTAVEDISVMSRNTQGVRLIRLDDKEQLVEL 834



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 91/242 (37%), Gaps = 16/242 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              ++ V   +  G VKR  LS +   R  G     +  RD D +  +        ++ F
Sbjct: 639 FTDDEFVFMATANGTVKRTALSNFSRPRSNGIIALDI--RDGDRLVGVARTDGQRDIMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G   +     +      A   A +  + L+  + +  ++          +  ++ AT
Sbjct: 697 ADSGKAIRFNEQDVRPMGRTA---AGVRGIRLSDEQTMVGLIIV-------EDGDILTAT 746

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
            +G  +R  + D+    R G   + + + D     +       E++I+L +  G  VR  
Sbjct: 747 VNGYGKRTAIEDYPTQGRGGSGVLSIKTSDRNGGVVGAVQVATEDEIMLISNGGVLVRTA 806

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  I V + RN+ GVR I L   +Q++ +  +     + +E        +A     +   
Sbjct: 807 VEDISVMS-RNTQGVRLIRLDDKEQLVELERIPFLGDEDEEAGGDDGDDNAGENSSASGE 865

Query: 770 EE 771
           EE
Sbjct: 866 EE 867


>gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
 gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga
           ochracea F0287]
          Length = 839

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/911 (36%), Positives = 522/911 (57%), Gaps = 97/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP+VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG ++IR
Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++    ++ IVVTE+PYQV+ + +L+K ++LV+E R+  I D+RDES R   R+V
Sbjct: 243 AKAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FSVN +AL   +P+   L  ++  FV  R +VV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++VQ  AIL L L R+  +     + E      EI++  
Sbjct: 406 -------------DLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +      DE   +N Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R   GRNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEEKVRAV-GRNSQGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L  + D+V+ M  + +                                          
Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                     +E+ +L VSE G+GKR+   D       +RI+NR GKG++   +++  + 
Sbjct: 711 ----------REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + + +++++  G  IR+ ++ +RI  RAT+GV + +    + + +V ++ 
Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVM 818

Query: 899 ESEIVDEAEST 909
           + +  +  E  
Sbjct: 819 KEDDDESTEEA 829


>gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
 gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis
           L2-32]
          Length = 904

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/909 (38%), Positives = 513/909 (56%), Gaps = 97/909 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVNHQLEV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L  +I +  
Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  +      Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYDV---AKYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L +       DE++    C  ++DI+L +K G  ++F  +   +R   GR 
Sbjct: 668 RQGGLIAVRLMTDENGENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPM-GRQ 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+    GD++++M +V                                       
Sbjct: 727 TAGVQGMKFRDGDELLAMDVVQ-------------------------------------- 748

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 749 -------------GDSDRDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGS 793

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V ++DQI+ +   G +IR  V E++   R T+GV +    K++ ++S+ R  E+
Sbjct: 794 LVGAVIVEESDQIMAIMKSGKVIRSNVAEVKRTGRTTQGVTLAKPDKNDEIISIARNEET 853

Query: 901 EIVDEAEST 909
           +  D  ++ 
Sbjct: 854 DEDDAEQAA 862


>gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9]
          Length = 920

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/908 (38%), Positives = 516/908 (56%), Gaps = 97/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + DEM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 48  QRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNK 107

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTEC
Sbjct: 108 CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRYTEC 167

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 168 RMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 227

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV DG    +D+P+   + L++     I+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 228 NMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATILGHKGIEQAYRTGRGLIT 287

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 288 MRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSGRTGQ 346

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + +V
Sbjct: 347 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDV 406

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S   E AR  LM          
Sbjct: 407 IARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSSQTVEIARTGLM---------- 456

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + +VQ  AIL ++L RL  L R  I +E + L   I +  
Sbjct: 457 ----------------DLLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYA 500

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +       RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 501 DILAKPERQRKIVGDELDEIVARYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHAGFI 560

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +RD+D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 561 KRTKADEYRAQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPE 620

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P+ E +    Y+V AT+ G V++ +LS++   
Sbjct: 621 GSRDSKGQHVANLLQFTPDESIQTVLSIPDYEVAD---YLVLATRSGKVKKTRLSEYDSP 677

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L         DE++    C   +DI+L +KLG  ++F      +R   GR 
Sbjct: 678 RQGGLIAVRLMQDESGETADELIGAALCNATDDIILVSKLGMSLKFRADDEQLRPM-GRQ 736

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+    GD++++M ++                                       
Sbjct: 737 TAGVQGMKFRAGDELLAMDVI--------------------------------------- 757

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +L V+ +GF KRT+  ++R+  R+G G++A  ++  +E G 
Sbjct: 758 ------------WGETDKDLLVVTNQGFAKRTAISEYRLQGRNGFGVKAVQLT--DERGT 803

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V++ DQI+ +   G +IR  V+E+++  R T+GV +      + ++S+ R  E+
Sbjct: 804 LVGAVVVSEEDQIMAIMKSGKVIRSNVSEVKLTGRTTQGVTLAKPDAGDEIISIARNAET 863

Query: 901 EIVDEAES 908
           E   + ++
Sbjct: 864 EDEADGDT 871


>gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271]
          Length = 841

 Score =  825 bits (2131), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/911 (36%), Positives = 522/911 (57%), Gaps = 97/911 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I+DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I GEV+GKYHPHG+ A+YD + RMAQ WSLR +L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP+VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A IDN DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG ++IR
Sbjct: 183 PHNLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++    ++ IVVTE+PYQV+ + +L+K ++LV+E R+  I D+RDES R   R+V
Sbjct: 243 AKAEFQEIK-GKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FSVN +AL   +P+   L  ++  FV  R +VV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSVNNIALVKGRPQLLNLKDLIFHFVEHRYDVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++VQ  AIL L L R+  +     + E      EI++  
Sbjct: 406 -------------DLIAEFDLTDVQAEAILALALRRINKVLIQQTKEEYEEKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDERRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTQLSEYKTQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++   ++I   +      DE   +N Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAIQNLINIESDDKIKAFVSVQNLKDEDYISNNYLIMATKKGIVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R   GRNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFAEDKVRAV-GRNSQGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L  + D+V+ M  + +                                          
Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                     +E+ +L VSE G+GKR+   D       +RI+NR GKG++   +++  + 
Sbjct: 711 ----------REETVLVVSENGYGKRSYIDDPETHEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + + +++++  G  IR+ ++ +RI  RAT+GV + +    + + +V ++ 
Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRILGRATQGVKLINIKGKDSIAAVTKVM 818

Query: 899 ESEIVDEAEST 909
           + +  +  E  
Sbjct: 819 KEDDDESTEEA 829


>gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
 gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1]
          Length = 820

 Score =  825 bits (2130), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/846 (43%), Positives = 532/846 (62%), Gaps = 32/846 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE   +GI  V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R  LI+G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  LL D+ K+TVDF PNYD   +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG V +IDNPD  LD LM +I+GPDFPTG VILGR GI+ AY TGRGS
Sbjct: 182 TNIPPHNLREVIDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I  I DLRDESDR+G
Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R     V+LN L+++T+LQ+ F V  +AL   +P+  TL   L+ ++  + +
Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR+ L+         
Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELIQRIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    L  +I+QE+L +K+     RRTRIV    ++ +ED I   D+V+ ++H GY
Sbjct: 456 KAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+PLS Y +QRRGG+G + +   +EDFVT L + STH  +LFF++ G +Y  K + +P
Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               QARG  ++N+L++ QGE++T ++P    D +   + Y+ FAT+ G V++  L+++ 
Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G IA+ L   D+++ V+      +I++ T+ G  +RFP + +R   GR + GV+G
Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL++GD+VI+M +                  +      +           + + +   +
Sbjct: 695 ISLSEGDEVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHA 754

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E C  +   E  I+ V++ G   R    D    +R+ +G+R  +V +  E+ ++     
Sbjct: 755 IEMC--MVTPEDDIMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASV--SRV 810

Query: 847 VNDNDQ 852
           V D+D+
Sbjct: 811 VKDDDE 816



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   K + +  R    + +E       + +     E   ++L      ++ ++ 
Sbjct: 453 AELKAILADPKLLDSVIRQEILEIKERFGDDRRTRIVNAEGEISEEDLIPVHDVVIAITH 512

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ KR     +    R G+G+   +  + +    +  +   + +D ++  +++G +  +
Sbjct: 513 RGYIKRLPLSTYHSQRRGGRGMTLINAHEEDF---VTGLHVTSTHDYLLFFTNRGRMYAI 569

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAES 908
              ++    R  +G   V + +  + E+V ++  ++  +  +  ++
Sbjct: 570 KAYDVPEFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDT 615


>gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
 gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542]
          Length = 883

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/933 (37%), Positives = 529/933 (56%), Gaps = 109/933 (11%)

Query: 1   MTEHIISSDEE-----------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+ +                 E   I SV +  EMQ SYL YA++VI+GRA+P++RDGL
Sbjct: 1   MTDDLTPEPSTPEILGENGLAIEHGRIQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M   G   ++ + KC+R+ G+VMGK+HPHG+ AIYDAL R+ QDWSLR  
Sbjct: 61  KPVHRRVLYAMYDGGYRPDRAFSKCSRVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L+ GQGNFGS   DP AA RYTECR+   A  ++ D+ KDTVDF+ NYDG  QEP +L +
Sbjct: 121 LVAGQGNFGSPGNDPAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDF 225
           R+PN+LVNG  GIAVGMATNIP HNL EV +G    +D+PD   + ++     II+GPDF
Sbjct: 181 RFPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PTGA ILG  GI++AY TGRGSI +R + ++E+   +R  +VVTE+PYQVN   +  KIA
Sbjct: 241 PTGATILGHRGIEDAYRTGRGSITMRAIVNVEEIQ-NRICLVVTELPYQVNPDTLALKIA 299

Query: 286 ELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           ELV++ R+  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 300 ELVKDGRVQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLAL 359

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P   ++   ++ +VA + EV+VRRT +LL +A  + H+  G   A+  LD+V+ +I
Sbjct: 360 VDGVPRTLSIDAFIRHWVAHQLEVIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALI 419

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP+ + AR+ L++                           + + E+Q  AIL ++L R
Sbjct: 420 RRSPDADRARQGLIE--------------------------MLDIDEIQATAILNMQLRR 453

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R +I +E + L  EI E  DIL+  SR   I+  EL  +  +    RRT ++   
Sbjct: 454 LAALQRQEIIDEHDKLEKEILEYQDILAKESRQRQIVSDELNELVAKYGDERRTTVLPHA 513

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I  E+MVVT++  GY KR     YRAQ+RGGKG  G  +R++D V   F+ +
Sbjct: 514 GEVSMEDLIAEEEMVVTITRGGYAKRTRSDNYRAQKRGGKGVRGAQLREDDIVDHFFVTT 573

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++LG VY+ K + LP G   A+G+ + N+L+   GE+I  ++   + + +  
Sbjct: 574 THHWLLFFTNLGRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEKIAQVLDLRDYDVAD- 632

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLT 699
             Y+V AT+ G V++ +LS++      G IA+ L        DE++S       +D++L 
Sbjct: 633 --YLVLATRRGTVKKTRLSEYDSNRSGGVIAINLREDADGQPDELVSARLVDATDDLILV 690

Query: 700 TKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           ++ GQ +RF  S   +R   GR + GV G+   + D++++M +V                
Sbjct: 691 SRKGQSIRFTASDEAMRPL-GRATSGVTGMKFREDDELLAMDVVRDG------------- 736

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     +  V+E GF KRTS  ++
Sbjct: 737 ----------------------------------------AHLFVVTEGGFAKRTSVDEY 756

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+  R G GI+  ++ +    G LV     +++D+++++ ++G ++R  VN++ +  R T
Sbjct: 757 RVQGRGGLGIKVANLVEA--RGDLVGALVTDEDDEVLVIMERGKIVRSAVNQVHLTGRTT 814

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +GV      K++R+++V R  E  + D+ +S E
Sbjct: 815 QGVTFAKPDKNDRIIAVARNVERNLGDDIDSEE 847



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 96/260 (36%), Gaps = 18/260 (6%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
           D +V  +  G VK+  LS Y + R GG     +    +    +L           ++  S
Sbjct: 632 DYLVLATRRGTVKKTRLSEYDSNRSGGVIAINLREDADGQPDELVSARLVDATDDLILVS 691

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +          P  R  + +  +   + + +  +          +  ++   T+
Sbjct: 692 RKGQSIRFTASDEA-MRPLGRATSGVTGMKFREDDELLAMDVVR------DGAHLFVVTE 744

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRF 708
            G  +R  + ++ ++   G + +K+ +      D ++      +++++L+  + G+ VR 
Sbjct: 745 GGFAKRTSVDEY-RVQGRGGLGIKVANLVEARGD-LVGALVTDEDDEVLVIMERGKIVRS 802

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ +    GR + GV      K D++I++A  +  +   D         S    + + D
Sbjct: 803 AVNQV-HLTGRTTQGVTFAKPDKNDRIIAVARNVERNLGDDIDSEESGEGSDGGAVTTSD 861

Query: 769 TEEITSLKNDSSVEGNISEE 788
            ++       +      SEE
Sbjct: 862 DQQHPDDAVVTPDLSTGSEE 881


>gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
 gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547]
          Length = 875

 Score =  824 bits (2129), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/896 (39%), Positives = 513/896 (57%), Gaps = 90/896 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +  +   I  V ++ EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRRI++ M   G   
Sbjct: 29  PEIPQHGRIEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRP 88

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y KCAR+ G+VM  YHPHG++AIYDA+ R++Q WS+R  LI+GQGNFGS   D PAA
Sbjct: 89  DRSYNKCARVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAA 148

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECR+Q  A  L+ D+ +DTVDF PNYDG   +P VL AR+PN+LVNG  GIAVGMA
Sbjct: 149 PRYTECRMQPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMA 208

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           T IP HNL EV +GC  ++DNP+   +     L+++I+GPDFPTGA+I+GR+GI++AY T
Sbjct: 209 TQIPPHNLREVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIMGRSGIEDAYRT 268

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +R V  +E+    R  +VVTE+PYQVN  A+  KIAELV+  ++  IADLRDE 
Sbjct: 269 GRGSITMRAVVEVEEIQ-GRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDET 327

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P    +   ++ +V
Sbjct: 328 SGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQQNFGANMLALVDGVPRTLPINAFVRHWV 387

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + EV+VRRT+Y L +A ++ H+L GL  A+  LDEV+ +IR SP  E AR  LM    
Sbjct: 388 DHQVEVIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLM---- 443

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + EVQ RAIL+++L RL  L R  I +E + L  
Sbjct: 444 ----------------------DLLDIDEVQARAILDMQLRRLAALERQKIIDEHDRLQA 481

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I++  DIL++ +R   II +EL ++ ++    RRT IV    ++  ED I  E++VVT+
Sbjct: 482 LIEDLEDILATPARQRTIISEELAAIVEQYGDERRTEIVPSDAEVNMEDLIPDENVVVTI 541

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR+ +  YR+QRRGGKG  G  +R +D V   F   TH  +LFF+  G VY+ +
Sbjct: 542 TRGGYAKRIRVDAYRSQRRGGKGVRGTTLRADDVVDHFFTTQTHGWLLFFTDAGRVYRAR 601

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            W LP GS  ++G+ + NI++    E+I  ++   +        Y+V ATK+G V++ +L
Sbjct: 602 AWELPEGSRDSKGQHVANIMAFGPDEKIAQVLTIKDY---QAAPYLVLATKNGLVKKTRL 658

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           +++      G IA+ L   DE++  E  +  +DIL+ ++ GQ +RF  S   IR   GR 
Sbjct: 659 TEYDSPRSGGLIAVNLREGDELVGAELVSDADDILMVSRKGQSLRFTASDDQIRPM-GRA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+     D++++M +V     D +                               
Sbjct: 718 TSGVTGMRFRGDDELLAMRVVPSDAEDAE------------------------------- 746

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +  V + G  KRT+   +R+  R G G++    S  ++ G 
Sbjct: 747 -------------------VFVVFQSGMAKRTAVDQYRVQGRGGLGVKVAKAS--DKGGD 785

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           LV    V   D++++V   G ++R  V+E+R+  R T GV      K E +V+V R
Sbjct: 786 LVGALVVGQQDEVMVVMSSGKVVRSRVDEVRMTGRDTSGVRFADPGKKEHIVAVAR 841


>gi|148239925|ref|YP_001225312.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
 gi|147848464|emb|CAK24015.1| DNA gyrase subunit A [Synechococcus sp. WH 7803]
          Length = 878

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/892 (39%), Positives = 522/892 (58%), Gaps = 68/892 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +EM  SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 14  RIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKC 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+ + LI+G GNFGSVD DPPAA RYTE R
Sbjct: 74  ARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMSMPLIDGHGNFGSVDNDPPAAMRYTESR 133

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L+      LL+D+  +TVD+  N+DGS QEP VL +R P +L+NG  GIAVGMATNIP H
Sbjct: 134 LKALTTDSLLEDIEAETVDYVDNFDGSQQEPTVLPSRIPQLLLNGSAGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++ G +A+I+NP++    LM +I GPDFPTG  ILGRTGIK  Y +GRGS+ +RGV
Sbjct: 194 NLGELIAGLLALIENPELSDQELMALIPGPDFPTGGQILGRTGIKETYLSGRGSVTMRGV 253

Query: 254 SHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + IE        DR+ +++T +PYQ NKAAM+E+IAE+V +K++  I+D+RDESDR G R
Sbjct: 254 AAIETLEVPGRPDRDAVIITALPYQTNKAAMIERIAEMVNDKKLEGISDIRDESDRDGMR 313

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+EL+R A   V+LN LY+ T LQS FS +M+AL   +P   TL  +L+ F+ FR E +
Sbjct: 314 IVVELRRDAYPQVVLNNLYKLTPLQSNFSAHMLALVNGEPILLTLRKMLEVFLDFRVETI 373

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +R H+L+GL +A+  LD ++ +IR +P+  TAR++L +R         
Sbjct: 374 ERRTRYFLRKAEERDHILLGLLLALDQLDPIIALIRAAPDTATARQQLQERH-------- 425

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+VQ  AIL+++L RLT L  D IR E   L ++I +  D
Sbjct: 426 ------------------GLSDVQADAILQMQLRRLTALEADKIRLEHEDLVVKIADYKD 467

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL  R R+ GII+ EL  ++D    PRRT I++    ++D D I  E  VV ++  GY+K
Sbjct: 468 ILGRRERVFGIIQDELGQLRDRHAIPRRTEILDLGGGLDDIDLIANERSVVLLTETGYLK 527

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S + A  RG +G++G   + E+ V      + H ++L FS  G  Y    +R+P  
Sbjct: 528 RMPVSEFEATSRGTRGKAGTRSQGEEAVKLFIGCNDHDTLLLFSDRGVSYALPAYRVPQC 587

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  ++ +L + + E IT+++   E     ++  ++  T+ G ++R +LS F  I 
Sbjct: 588 SRTAKGTPVVQLLPIPREEMITSLLAVSEFN---DDTDLLMLTQGGFIKRTRLSAFSNIR 644

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGI 727
            +G IA+ L+  D +  V      + +L+ ++ G  + F +S   +R   GR + GVR +
Sbjct: 645 SNGLIAIGLEEGDALTWVRLAVPGDSVLIGSRAGMTIHFRLSDDELRPL-GRTARGVRSM 703

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  GD ++SM ++                              +      +    + S 
Sbjct: 704 NLRDGDALVSMDVLP-----------------------------VELADRVAQSSEDDSG 734

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           E          ++L  S  G GKR     FR+  R+G G+RA       E  ALV +  +
Sbjct: 735 EDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKF--RTEADALVGLRVL 792

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              ++++LVS+KG ++R   + I   SRA  GV +    K +R+  V  +  
Sbjct: 793 GAGEEVLLVSEKGVIVRTSADSIPQQSRAATGVRLQRLDKGDRLSEVVLVPP 844



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 98/301 (32%), Gaps = 27/301 (8%)

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
           + L   + +  I  + +       ++ +   + G +R           R+  + +     
Sbjct: 451 IRLEHEDLVVKIADYKDILGRRERVFGIIQDELGQLR----DRHAIPRRTEILDLGGGLD 506

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV---ISM 738
           D    ++    E  ++L T+ G   R P+S       R + G  G      + V   I  
Sbjct: 507 D----IDLIANERSVVLLTETGYLKRMPVSEFEA-TSRGTRGKAGTRSQGEEAVKLFIGC 561

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                     D  + Y        +                  E  I+          + 
Sbjct: 562 NDHDTLLLFSDRGVSYALPAYRVPQCSRTAKGTPVVQLLPIPREEMITSLLAVSEFNDDT 621

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L +++ GF KRT    F  SN    G+ A  + +     AL  V      D +++ S 
Sbjct: 622 DLLMLTQGGFIKRTRLSAF--SNIRSNGLIAIGLEEG---DALTWVRLAVPGDSVLIGSR 676

Query: 859 KGTLI--RVPVNEIRIASRATKGVVIFSTAKDERVVSV--------ERIRESEIVDEAES 908
            G  I  R+  +E+R   R  +GV   +    + +VS+        +R+ +S   D  E 
Sbjct: 677 AGMTIHFRLSDDELRPLGRTARGVRSMNLRDGDALVSMDVLPVELADRVAQSSEDDSGED 736

Query: 909 T 909
            
Sbjct: 737 E 737



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 94/265 (35%), Gaps = 25/265 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G++KR  LS +   R  G     + + + D +T + +     SVL  
Sbjct: 617 FNDDTDLLMLTQGGFIKRTRLSAFSNIRSNG--LIAIGLEEGDALTWVRLAVPGDSVLIG 674

Query: 593 SSLGFV--YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-------------- 636
           S  G    ++     L      ARG   +N L          ++P               
Sbjct: 675 SRAGMTIHFRLSDDELRPLGRTARGVRSMN-LRDGDALVSMDVLPVELADRVAQSSEDDS 733

Query: 637 --PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLD-SRDEILSVETCT 691
              E     +  +V+ A+  G  +R  ++ F    R+G    AMK     D ++ +    
Sbjct: 734 GEDETGDVSDGPWVLVASASGLGKRVPVTQFRLQKRAGMGLRAMKFRTEADALVGLRVLG 793

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
              ++LL ++ G  VR    +I     R + GVR   L KGD++  + +V       +E 
Sbjct: 794 AGEEVLLVSEKGVIVRTSADSI-PQQSRAATGVRLQRLDKGDRLSEVVLVPPEAESDEEE 852

Query: 752 ICYMKHMSAQRRLISGDTEEITSLK 776
                  +      S   E  +   
Sbjct: 853 ADAEASDAPVVGADSNAAEPSSDQD 877


>gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT]
 gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 843

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/901 (40%), Positives = 525/901 (58%), Gaps = 86/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I  V I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K 
Sbjct: 2   NNEGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GIK AY TGRG +VI
Sbjct: 182 PPHNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKRAYETGRGKVVI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDRQG R+
Sbjct: 242 RSKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LNQLY++T +Q  F + M+AL   +P   +L  +LK ++ F+EEV+ 
Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  LM +          
Sbjct: 362 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTGL R+ I  E   L   IK   +I
Sbjct: 412 ----------------FNLSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549
           LS++  LL IIK EL  +K +    RRT IV G  +  + ED I  +D+V+T++H GY+K
Sbjct: 456 LSNKDLLLKIIKDELNEIKIKYGDERRTEIVHGDGNDIDIEDLIEEKDVVITLTHAGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y AQRRGG+G   +  +++DFV  +   STH ++LFFS+ G VYK K +++P  
Sbjct: 516 RLPVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  LIN+L L + E+I                                       
Sbjct: 576 GRTAKGMNLINLLPLEKNEKIQN------------------------------------- 598

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                         ++ ++    +  +++ TK G   +  +            G+  I+L
Sbjct: 599 --------------VIYLKEFKPDRYLIMGTKNGLIKKTSLDQYSSI---RKNGLNAINL 641

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D++IS   V     D +         + +            +    +    +  E  
Sbjct: 642 RENDELIS---VRVTTGDCNIIYATKNGYAIKFDENDARPMGRNATGVKAITLRDDDEVV 698

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+ +L VSE G+GKRT   ++ +  R GKG+    +S+  + G L+    V D
Sbjct: 699 SMEVASDERDLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVED 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            D+++L++D G  IR+ V++I + SR   GV +  T ++E+VV++ ++  +E   E  S 
Sbjct: 757 EDELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTMAKVNITEEEMEEGSN 816

Query: 910 E 910
           +
Sbjct: 817 D 817


>gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
 gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)]
          Length = 827

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/890 (40%), Positives = 545/890 (61%), Gaps = 71/890 (7%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++  K I  V+I +E++ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M  +  EWNK
Sbjct: 2   KDIAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+YD++ RMAQ +SLR  LI+GQGNFGS+DGDP AA R
Sbjct: 62  PYKKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + AH +L +L K+T+DF  NYDG+ + P +L  + PN+L+NG  GIAVGMATN
Sbjct: 122 YTEIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++GC+A + NP I L  LM  I GPDFPT  +I G+ GIK AY TG+G I+
Sbjct: 182 IPPHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIYGKNGIKEAYKTGKGKII 241

Query: 250 IRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R   +IE      +E +++ E+PYQVNK+ ++EKIA LV+EK+I  I ++RDESD+ G 
Sbjct: 242 VRSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++K+   + +ILNQLY  TSLQ+ F +NMVAL+  KP+   L  ILK F+  R+++
Sbjct: 302 RIVIDIKKDFISQIILNQLYTLTSLQTSFGINMVALSSGKPKTMNLKKILKEFIKHRKKI 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R+  + L K+  + H+L G AIA+ N++ ++ +I+ S N   A+              
Sbjct: 362 IKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAK-----------KKL 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             I+   +++ +  +    Y S  Q+ AIL ++L +LT L +  I  E N L  +  +  
Sbjct: 411 KKINWKKENNSSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLK 470

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            ILS+++ L   I++EL  +K +    R+T+I+  + ++  ED IV+E +VVT+S+ GYV
Sbjct: 471 KILSNKNILEKKIEKELNEIKKKFSDTRKTKIISKMSEINIEDMIVKETVVVTLSYSGYV 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K  P+S Y AQ+RGG+G+S    ++ED++T+L + ++H ++L FSS G +Y  KV++LP 
Sbjct: 531 KYQPISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPE 590

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ARGK ++N+L L   ERITTI+P  + +SS N   +  AT  G V++  L  F + 
Sbjct: 591 TSRNARGKPIVNLLPLTSKERITTILPISKYKSSIN---IFMATALGFVKKTSLIQFKKP 647

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IA+ L   D+++ V   T  N+I + T  G+ V+F    IR   GR + G+RG+ 
Sbjct: 648 RNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKM-GRTASGIRGMK 706

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +   D+++S+ +    D                                           
Sbjct: 707 ITNNDRLVSLLVPNKKDD------------------------------------------ 724

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL V+  G+GKRT+   F I +R+ KG+ +  V++ N  G ++    V 
Sbjct: 725 -----------ILIVTANGYGKRTNINQFPIKSRATKGVLSIRVTQKN--GVVIGAIQVK 771

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            NDQI+++++ GTL+R  V+EI I  R T+GV++  T K E+VV ++++ 
Sbjct: 772 QNDQIMIITNAGTLVRTRVSEIAILKRNTQGVILIRTIKKEKVVGLQKLS 821



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 82/204 (40%), Gaps = 15/204 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LG+VK+  L  ++  R  G     + +R  D +  + + + + ++  F+S G V +  
Sbjct: 631 TALGFVKKTSLIQFKKPRNSG--IIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFS 688

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + I + ++                     ++  T +G  +R  +
Sbjct: 689 EKTIRKMGRTASGIRGMKITNNDR---------LVSLLVPNKKDDILIVTANGYGKRTNI 739

Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           + F   +R+ K  + +        ++      Q + I++ T  G  VR  +S I +   R
Sbjct: 740 NQFPIKSRATKGVLSIRVTQKNGVVIGAIQVKQNDQIMIITNAGTLVRTRVSEIAILK-R 798

Query: 720 NSVGVRGISLAKGDQVISMAIVLH 743
           N+ GV  I   K ++V+ +  + +
Sbjct: 799 NTQGVILIRTIKKEKVVGLQKLSN 822


>gi|317509460|ref|ZP_07967078.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
 gi|316252289|gb|EFV11741.1| DNA gyrase, subunit A [Segniliparus rugosus ATCC BAA-974]
          Length = 826

 Score =  824 bits (2128), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/907 (39%), Positives = 510/907 (56%), Gaps = 94/907 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE   +S       I  V +  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRRIL  M
Sbjct: 1   MTEPTDTS--PPRDRIEPVDLGQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRILHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   E MG YHPHG++AIYDAL RMAQ WSLR  LI+GQGNFGS 
Sbjct: 59  QDQGFRPDRGYVKSARPVSETMGNYHPHGDSAIYDALVRMAQPWSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE RL   A  ++ D+  +TVDF PNYDG  +EP VL AR PN+LVNG G
Sbjct: 119 GNDGAAAMRYTEARLAPLALEMVRDIDAETVDFVPNYDGKTEEPSVLPARIPNLLVNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D           +    L+A+ EI++GPDFPT  +I+G  G
Sbjct: 179 GIAVGMATNIPPHNLREVADAVFWALEHHDADEATTLEAVKEIVKGPDFPTAGLIVGTDG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV  IE+ SG R  +V+TE+PYQVN   M+  IAE VR+ +I  I
Sbjct: 239 IADAYTTGRGSIRMRGVVEIEEDSGGRTILVITELPYQVNPDNMILAIAEQVRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+A+    P    L 
Sbjct: 299 AQIDDESSDRIGMRIVVTLKRDAVARVVLNNLYKHSQLQTNFGANMLAIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ +VA + EV+VRRT+YLL KA +RAH+L GL  A+  LDEV+ +IR S + + AR 
Sbjct: 359 QIIRLYVAHQIEVIVRRTQYLLRKAEERAHILRGLVKALDALDEVIALIRASASADEARV 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q RAIL ++L RL  L R  I +
Sbjct: 419 GLME--------------------------LLDVDEIQARAILAMQLGRLAALERQKIFD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +  DIL+   R   I++ EL  + D+    RRTRI+    D+ DED I +
Sbjct: 453 ELAEIEEEIADYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQ 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 513 EDVVVTITETGYAKRTKTELYRSQKRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTTR 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  +  ARG+ + N+L+L   E+I  ++     E   +  Y+V ATK G
Sbjct: 573 GRVYRIKAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYE---DAPYLVLATKRG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
             ++++L++F      G +A+ L   DE++    C+ ++D+LL ++ GQ +RF  +   +
Sbjct: 630 LTKKSRLTEFDSNRSGGIVAVNLKDDDELVGAALCSADDDLLLVSEHGQSIRFHANDEQL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+   + DQ+++M +V                                
Sbjct: 690 RPM-GRATSGVLGMRFNEDDQLLAMNVVRDG----------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT   ++    R GKG+      
Sbjct: 720 ------------------------AYLLVATSGGYAKRTDLGEYPAQGRGGKGVLTVQYD 755

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +    G LV    V+D+ ++  ++  G +IR    ++R A R TKGV + + A+ +R+++
Sbjct: 756 RR--RGGLVGAVIVDDDTELYAITSGGGVIRTAARQVRRAGRQTKGVRLMNLAEGDRLIA 813

Query: 894 VERIRES 900
           V R  E 
Sbjct: 814 VARNDED 820



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 13/222 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                  +V  +  G  K+  L+ + + R GG     V ++D+D +    + S    +L 
Sbjct: 615 TYEDAPYLVLATKRGLTKKSRLTEFDSNRSGG--IVAVNLKDDDELVGAALCSADDDLLL 672

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            S  G   +       +  P  R  + +  +  N+ +++  +          +  Y++ A
Sbjct: 673 VSEHGQSIRFHANDEQL-RPMGRATSGVLGMRFNEDDQLLAMNVVR------DGAYLLVA 725

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRF 708
           T  G  +R  L ++    R GK  + +         +       + ++   T  G  +R 
Sbjct: 726 TSGGYAKRTDLGEYPAQGRGGKGVLTVQYDRRRGGLVGAVIVDDDTELYAITSGGGVIRT 785

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
               +R  AGR + GVR ++LA+GD++I++A      A   E
Sbjct: 786 AARQVR-RAGRQTKGVRLMNLAEGDRLIAVARNDEDSAGSGE 826



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 71/211 (33%), Gaps = 59/211 (27%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           DY + +   +   A  R    +  +    +  + +     + R ++L  +E  ++T++E 
Sbjct: 463 DYKDILAKPERQRAIVRDELKEIVDKHGDERRTRIIAAEGDVRDEDLIAQEDVVVTITET 522

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRV 865
           G+ KRT +  +R   R GKG++   +    +   +VA F V + +D I+  + +G + R+
Sbjct: 523 GYAKRTKTELYRSQKRGGKGVQGAAL----KQDDIVAHFFVCSTHDWILFFTTRGRVYRI 578

Query: 866 PVNEIRIA-----------------------------------------------SRAT- 877
              E+                                                  SR T 
Sbjct: 579 KAYELPDMNRAARGQHVANLLALQTEEKIAQVIHLRTYEDAPYLVLATKRGLTKKSRLTE 638

Query: 878 ------KGVVIFSTAKDERVVSVERIRESEI 902
                  G+V  +   D+ +V        + 
Sbjct: 639 FDSNRSGGIVAVNLKDDDELVGAALCSADDD 669


>gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233]
 gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233]
          Length = 831

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/910 (38%), Positives = 509/910 (55%), Gaps = 97/910 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +  E      V I  EMQ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+GM   G   
Sbjct: 4   PNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSGFRP 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++  VK +R+ G+VMG YHPHG++ IYD + RMAQ WSLR  +I+GQGNFGS+  DPPAA
Sbjct: 64  DRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDPPAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTECRL + A  +LD +G+ TVD  PNYD    EP VL AR PN+LVNG  GIAVGMA
Sbjct: 124 MRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAVGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL EV    V  ++NP+   + L    ME I+GPDFPTGA+I+G+ GI +AY T
Sbjct: 184 TNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIVGKDGIADAYRT 243

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +R V +IE+ +  R  +VVTE+PYQVN   ++E IA L ++ +I  IAD+ DE 
Sbjct: 244 GRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADIADES 303

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VI LKR A A V+L  L+++T+LQ+ F  NM+A+    P    L  ++  +V
Sbjct: 304 SDRIGMRLVITLKRDAVAKVVLANLFKHTALQTSFGANMLAIVDGVPRTLRLDQMISLYV 363

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A + EV+VRRT+Y L+KA +RAH+L GL  A+  LDEV+ +IR SP+ E ++  LM+   
Sbjct: 364 AHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAGLME--- 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E+Q  AIL+++L RL  L R  I +EL  L  
Sbjct: 421 -----------------------LLDVDEIQATAILDMQLRRLAALERQRIIDELAELER 457

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   II+ EL    D+    RRTR+V    D+  ED I  ED+VVT+
Sbjct: 458 VIADLKDILAKPERQRAIIRDELTEAVDKHGDDRRTRLVPYDGDVSVEDLIAVEDVVVTI 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR    +YRAQRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 518 TRTGYAKRTKTDLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAK 577

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + LP  +  ARG+ + N+L+    ERI  ++  P         Y+V ATK G V++++L
Sbjct: 578 AYELPEANRNARGQHVANLLAFQPDERIAEVIQIPHY---QAAPYLVLATKGGLVKKSEL 634

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           + F      G +A+ L   DE++    C    D+LL +  GQ +RF  +   +R   GR 
Sbjct: 635 AAFDSNRAGGIVAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPM-GRA 693

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+    GD+++SM++V                                       
Sbjct: 694 TSGVLGMRFNAGDELLSMSVVYEG------------------------------------ 717

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +L  +E+G+ KRT   ++ +  R GKG+      +    G 
Sbjct: 718 -----------------AQVLVATERGYAKRTDIDEYPVQGRGGKGVLTIQYDRR--RGK 758

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V+ + ++  ++    +IR    E+R A R T GV + + ++ + +V++ R    
Sbjct: 759 LVGALIVDLDTEVYAITSGAGVIRTQAREVRKAKRQTMGVRLMNLSEGDSLVAIARNA-- 816

Query: 901 EIVDEAESTE 910
              D+A++ +
Sbjct: 817 ---DDADTVD 823



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 13/224 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+  L+ + + R GG     V +RD+D +    +   +  +L  S+ G
Sbjct: 618 PYLVLATKGGLVKKSELAAFDSNRAGG--IVAVNLRDDDELVGAVLCDANADLLLISAEG 675

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +  N G+ + ++         +    V+ AT+ G 
Sbjct: 676 QSIRFHATDETL-RPMGRATSGVLGMRFNAGDELLSMSVV------YEGAQVLVATERGY 728

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR---DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + ++    R GK  + +       +++       + ++   T     +R     +
Sbjct: 729 AKRTDIDEYPVQGRGGKGVLTIQYDRRRGKLVGALIVDLDTEVYAITSGAGVIRTQAREV 788

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           R  A R ++GVR ++L++GD ++++A         D        
Sbjct: 789 R-KAKRQTMGVRLMNLSEGDSLVAIARNADDADTVDSGPAGGSS 831


>gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
 gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1]
          Length = 856

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/844 (44%), Positives = 542/844 (64%), Gaps = 20/844 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K 
Sbjct: 7   EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+AA+YD + R+AQ +S+R  L++GQGNFGS+DGD PAA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL D+ K+TVDF  NYDGS QEP VL  R PN+LVNGG GIAVGMATNIP HN
Sbjct: 127 MARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D CVA++D+P++ +++L+E +  PD PTG +I G  GI  A+ TGRG +V+R  +
Sbjct: 187 LREVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGTAGIHQAFRTGRGRMVLRARA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+ + DRE+IVVTE+PYQVNKA ++EKIAELV+E+R+  I++LRDESD++G R+V+EL
Sbjct: 247 EVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGIRIVLEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KRG + +++LN LYR+T +Q++F +N+VAL+  +P    L  +L+AF+  R EVV RRT 
Sbjct: 307 KRGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQPRTLNLRQVLEAFIRHRREVVTRRTI 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR+RAHVL GLA+A+AN+DEV+ +I+ S  P  A+ EL+ R W    + ++++  
Sbjct: 367 YELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGVVTEMLERA 426

Query: 435 DDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             ++                G   LSE Q +AIL+LRL RLT + +D I  E ++L   I
Sbjct: 427 GAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEEYSNLLERI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E + IL S  RL+ +I++EL++++D+    R+T I E   ++  ED I  EDMVVT+SH
Sbjct: 487 AELIHILDSGERLMEVIREELVAIRDQYGDERKTEIREDTAELSLEDLISEEDMVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL  YRAQRRGG+G+S   M+DEDF+  LFI +TH ++L FSS G  Y  KV+
Sbjct: 547 HGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHDTLLCFSSTGKCYWRKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP GS  +RG+ ++N+L L + ERI  ++P  E +    + +V  AT++G V++  LS 
Sbjct: 607 ELPQGSRTSRGRPMVNLLPLEEDERINAVVPVREFD---EDHFVFMATRNGTVKKTPLSH 663

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   SG IA++L   D ++  E    + +++L +  G+ +RF  S +R   GR + GV
Sbjct: 664 FSRPRSSGIIAVELRGDDTLVDAEITNGDREVMLLSDAGKALRFHESDVRAM-GRTAGGV 722

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L  G +VI++ I+   D        Y K    +     G           +   G 
Sbjct: 723 RGIRLESGQRVIALLILGEGDILTATEHGYGKRTPVEDYPRRGRGGMGVICIRTTERNGR 782

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +          ++  I+ VS  G   RT   D     R+ +G++   + +      LV +
Sbjct: 783 VV---GAVQAAEDDEIMLVSRSGTLVRTPVADVSRVGRNTQGVKLISLDEAE---QLVGL 836

Query: 845 FPVN 848
             V 
Sbjct: 837 ERVE 840


>gi|326329137|ref|ZP_08195465.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
 gi|325953024|gb|EGD45036.1| DNA gyrase, A subunit [Nocardioidaceae bacterium Broad-1]
          Length = 899

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/917 (37%), Positives = 510/917 (55%), Gaps = 61/917 (6%)

Query: 1   MTEHII--SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MTE              I +V +   MQ SY+ YA+ VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MTETPPEGPGQTSAGGRIETVELQSSMQASYIDYAMAVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + KCAR+ GEVMG YHPHG++AIYD L R+AQ W LR  LI GQGNFG
Sbjct: 61  AMYDGGYRPDRGFSKCARVVGEVMGNYHPHGDSAIYDTLVRLAQPWVLRYPLIHGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S   DP AA RYTECR+   A  ++ D+ +DTVDF PNYDG  QEP +L +R+PN+LVNG
Sbjct: 121 SPGNDPAAAMRYTECRMAPLALEMVRDITEDTVDFGPNYDGRSQEPSILPSRFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGR 234
             GIAVGMATNIP HNL EV  G    +++PD   +     L+E ++GPDFP GA+I+GR
Sbjct: 181 SAGIAVGMATNIPPHNLREVASGAKWALEHPDATREELQDALIERVKGPDFPNGALIVGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI+ AY TGRGSI  R V  +++ +  R  +V+TE+PY VN   + +KIA+L    ++ 
Sbjct: 241 EGIEQAYRTGRGSITQRAVIDVDEDNKGRTTLVITELPYMVNPDNLAQKIADLADTGKVQ 300

Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD++D  S R G ++V+ LKR A A V+LN L ++T LQ+ FS NM+AL    P   +
Sbjct: 301 GIADVKDNTSSRTGQQLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGVPRTLS 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           +   +  +V  + +V+ RRT + L KA + AH+  GL  A+  LD V+ +IR SP  + A
Sbjct: 361 IDQFISNWVEHQIDVIRRRTAFRLRKAEEDAHIWRGLVKALDQLDAVIALIRSSPEVDDA 420

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R+ L+                            + + E+Q  AIL+++L RL  L R  I
Sbjct: 421 RQGLI--------------------------RLLEIDEIQANAILDMQLRRLAALERQKI 454

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            + L  L + I +  DIL++ +R   I+  EL  +  +    RRT+I+    D+  ED I
Sbjct: 455 IDRLAELELIIADLEDILANVARQRQIVGDELDEIVAKYGDDRRTQIIAADGDLSMEDLI 514

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E++VV+++  GY KR   + YR Q+RGGKG  G  +R +D V      + H  +LFF+
Sbjct: 515 PDEELVVSITRGGYAKRTLANEYRTQKRGGKGVRGATLRGDDVVEHFIATTNHHWLLFFT 574

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + LP  +  A+G  +  +LS    E I  ++   + E      Y+V AT+
Sbjct: 575 TAGRVYRIKAYNLPEAARDAKGGHVAGLLSFQPDESIAQVLAIRDYE---QAPYLVLATR 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            G +++ +L D+    ++G IA+      DE++  E    E+DILL ++ GQ +RF    
Sbjct: 632 SGLIKKTRLGDYNSPRQAGVIAINFREDDDELIGAELVNSEDDILLVSRKGQAIRFRADD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GV G+    GD ++SM+++       +                     
Sbjct: 692 NQLRPM-GRATSGVTGMKFRDGDSLLSMSVIRAEHVAAEIAA------------------ 732

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            ++    D++             ++KEQF+ T+++ GF KRT   ++R+ +R G GI+  
Sbjct: 733 GLSEANEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTM 792

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN-EIRIASRATKGVVIFSTAKDE 889
            ++  +  G LV  F V D D+++ ++  G ++R P+N + R   R+T+GV   S  K +
Sbjct: 793 ALANADRGG-LVGAFIVVDGDEVLSITASGQVVRSPINSDFRATGRSTQGVKFVSPKKGD 851

Query: 890 RVVSVER-IRESEIVDE 905
            V  V R +   E+ DE
Sbjct: 852 SVAVVARSVEAREVDDE 868



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 92/285 (32%), Gaps = 39/285 (13%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G +K+  L  Y + R+ G         D++ +    + S     L  
Sbjct: 620 YEQAPYLVLATRSGLIKKTRLGDYNSPRQAGVIAINFREDDDELIGAELVNSEDDI-LLV 678

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE------------ 640
           S  G   + +        P  R  + +  +    G+ + ++     +             
Sbjct: 679 SRKGQAIRFRADD-NQLRPMGRATSGVTGMKFRDGDSLLSMSVIRAEHVAAEIAAGLSEA 737

Query: 641 -----------------SSWNNLYVVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSR 681
                                  +V   T  G  +R K+S++        G   M L + 
Sbjct: 738 NEDTADVAAPVSGAESPDQVKEQFVFTITDGGFAKRTKISEYRLQSRGGLGIKTMALANA 797

Query: 682 DE--ILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISM 738
           D   ++        +++L  T  GQ VR PI+   R   GR++ GV+ +S  KGD V   
Sbjct: 798 DRGGLVGAFIVVDGDEVLSITASGQVVRSPINSDFRA-TGRSTQGVKFVSPKKGDSV--A 854

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            +    +A   +         A    I GD E     +  +  E 
Sbjct: 855 VVARSVEAREVDDEIVPGTEVADDVTIDGDGEHGAPSETTTEDES 899


>gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii]
          Length = 824

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/902 (39%), Positives = 532/902 (58%), Gaps = 89/902 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+     ++    I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM
Sbjct: 1   MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSV
Sbjct: 57  HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A +DNPDI +  LM+ ++GPDFPTG  ILG TG++ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R    I +T  +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLR
Sbjct: 237 YETGKGIIAVRAQHEIVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  
Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A + E++ RRT++ L KA  R H+L  L  A+ ++D V++II+ + +PE AR  L+  
Sbjct: 356 YIAHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIA- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    T   +E+Q R+I  ++L RLTGL  D I  E ++L
Sbjct: 415 -------------------------TYDFTEIQARSIFTMQLQRLTGLEIDKIHEEADNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMV 539
             +I E   IL      + IIK EL  +KD+ D PR + +      D+++ED I  ED V
Sbjct: 450 AHKITEYKQILGDEDLKIEIIKSELQDIKDKYDDPRMSEVNLYEDLDIDNEDLIPVEDTV 509

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV++  Y+KR+ L  Y+ Q RGG G SGV + D+DFV  + + STH   LFF++LG V+
Sbjct: 510 VTVTNNPYIKRMNLDEYKLQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVF 569

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K K + LP GS Q++G  ++N L+   GE++ +     + +    + Y+ F TK G V+R
Sbjct: 570 KLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFD--AEDHYLNFVTKRGIVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++++  I ++G IA+ L   DE+L  ++      ILL    G+ + F  + IR   GR
Sbjct: 628 THINNYKNIRQNGIIAISLREDDELLLTKSTNGHKHILLGASNGKAIHFLETDIRQI-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ +   ++++  A+V   + D                                
Sbjct: 687 TATGVRGMDIPDDEEIVGFAVVDGIEDD-------------------------------- 714

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               IL ++E  +GK TS  ++R+ N  GKG++  +V+  N  G
Sbjct: 715 --------------------ILVITENRYGKPTSITEYRLQNTGGKGVKTLNVTHKN--G 752

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L  +  V +++ II+VS +G  IR+P+++I    RAT+GV I +   D++V ++  +  
Sbjct: 753 KLKTLRKVTNDEDIIVVSHRGITIRMPIDQISQTKRATQGVRIITLKGDQKVSTIAIVDH 812

Query: 900 SE 901
            +
Sbjct: 813 QD 814



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 75/215 (34%), Gaps = 10/215 (4%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADADYDE 750
           E+ ++  T      R  +   +    R  VG+ G+ L   D V  I+M         +  
Sbjct: 506 EDTVVTVTNNPYIKRMNLDEYK-LQNRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTN 564

Query: 751 --RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
             R+  +K  +            I +  N    E   S    ++   ++ ++  V+++G 
Sbjct: 565 LGRVFKLKGYTLPSGSRQSKGVPIVNYLNFQPGEKLASFTTIKDFDAEDHYLNFVTKRGI 624

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            KRT   ++   N    GI A  + +      L+     N +  I+L +  G  I     
Sbjct: 625 VKRTHINNY--KNIRQNGIIAISLRE---DDELLLTKSTNGHKHILLGASNGKAIHFLET 679

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +IR   R   GV       DE +V    +   E  
Sbjct: 680 DIRQIGRTATGVRGMDIPDDEEIVGFAVVDGIEDD 714


>gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 862

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/842 (44%), Positives = 530/842 (62%), Gaps = 19/842 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K 
Sbjct: 7   EILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +++R +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL D+ K+TVD+  NYDGS  EP VL  R PN+LVNGG GIAVGMATNIP HN
Sbjct: 127 MSRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV+D CVA+ID+  +D+DALM+ + GPD PT  +I G  GI  AY TGRG +V+R  +
Sbjct: 187 IREVIDACVALIDDDSLDVDALMQYLPGPDLPTAGIINGTAGIHEAYRTGRGRMVMRARA 246

Query: 255 HIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE+     + +I+V+E+PYQVNKA +LEKIAELV+EKR+  I +LRDESD+ G RVVIE
Sbjct: 247 RIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIRVVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG   +V+LN LY++T LQ++F +NMVAL   +P+   L  IL AFV  R EVV RRT
Sbjct: 307 LRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQPKLLNLRQILDAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL GLA+A+AN+D V+ +I+ SP P  A+  LM R W    + D+++ 
Sbjct: 367 IFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVTDMLER 426

Query: 434 ID-------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D            +G DG   LS  Q +AILELRL RLTGL ++ I  E   L  +I E
Sbjct: 427 ADATTPDDLSPDVGLGEDG-YRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLEQIGE 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL S  RL+ +I++EL++++++    RR+ I+   LD+  ED I  +D+VVT+SH G
Sbjct: 486 LIHILESGERLMEVIREELVAIREQYGDERRSEIIPQALDLTLEDLITPQDVVVTLSHSG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K  PL  YRAQRRGG+G+S   M+D DFV  LF+ +TH ++L FSS G  Y  KV+ L
Sbjct: 546 YAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSSHGKCYWLKVYEL 605

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P GS Q+RGK ++N+L L   ERI  ++P  E +   +  +V  AT +G V++  LS F 
Sbjct: 606 PQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFD---DAHFVFMATHNGTVKKTPLSHFS 662

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +G IA+ L + D ++ V       D++L +  G+ +RF  S +R   GR + GVRG
Sbjct: 663 RPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAM-GRTAAGVRG 721

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L  G +VI++ I+   D        Y K    +     G           S   G + 
Sbjct: 722 IRLEPGQRVIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGVICIQTSDRNGEVV 781

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     E  I+ ++  G   RT   D    +R+ +G++   + +      LV +  
Sbjct: 782 ---GAVQVADEDEIMLITRHGTLVRTPVADISRLSRNTQGVKLISLDEDET---LVGLER 835

Query: 847 VN 848
           + 
Sbjct: 836 IE 837


>gi|227549446|ref|ZP_03979495.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078523|gb|EEI16486.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 868

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/913 (37%), Positives = 515/913 (56%), Gaps = 95/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  ++ D      I  + I DEMQ SY+ YA++VI+GRA+PD+RDG+KPVHRR+++ M
Sbjct: 1   MSDDTLTGDG--FDRIQPIDINDEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRVIYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+  GE M   HPHG++AIYD L RMAQ WS+R  LI+GQGNFGS 
Sbjct: 59  YDSGYRPERSYVKSAKPVGETMANLHPHGDSAIYDTLVRMAQPWSMRYPLIDGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC++   A  ++ D+ ++TV+F PNYDG  +EP +L +R PN+L+NG G
Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENTVNFSPNYDGKTKEPDILPSRVPNLLMNGSG 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DN        LDA+ME ++GPDFPT  +I+G TG
Sbjct: 179 GIAVGMATNIPPHNLRELAEAIYWILDNHTADEKTTLDAVMERVKGPDFPTSGLIVGDTG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+    R+ IV+TE+PYQVN    +  IA+ +   ++   
Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEIGS-RQVIVITELPYQVNPDNFIANIADHIANGKLPGA 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ L++ FS NM+++    P    L 
Sbjct: 298 SRIDDESSDRVGMRIVVSLKRDAVPRVVLNNLYKHSQLETNFSANMLSIVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEART 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q   IL ++L RL  L R  I +
Sbjct: 418 GLIE--------------------------LLDVDEIQANEILSMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  +I +  DIL+S  R   I+  EL  + +     RRTR++    D+ +ED I R
Sbjct: 452 DLAEIERQIADLKDILASPERQRAIVGDELAEIVERYGDDRRTRLIAATGDVSEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + FI STH  +LFF++ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKAQKRGGKGVRGAELKQDDVVKNFFICSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     ERI  ++     E   +  Y+V AT+ G
Sbjct: 572 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEERIAQVIQIHSYE---DAPYLVLATREG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D+++     + E+D+LL ++ GQ +RF      +
Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDQLIGAALASDEDDVLLVSEQGQAIRFTADDEQL 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ+++M +V   D                            
Sbjct: 689 RPM-GRATAGVKGMRFRGDDQLLAMTVVHDND---------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT+  ++    R G G+     +
Sbjct: 720 -------------------------FLLVATSGGYGKRTAIGEYATQGRGGLGVMTFKYT 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V + DQI  ++  G +IR  V +IR +SRAT GV +    +D  +++
Sbjct: 755 P--KRGKLIGALAVEEEDQIFAITSAGGVIRTEVAQIRPSSRATMGVRLVDLGEDVELLA 812

Query: 894 VERIRESEIVDEA 906
           +++  E E  +EA
Sbjct: 813 IDKNVEDEGEEEA 825



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 14/267 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     + + + D +    + S    VL
Sbjct: 613 HSYEDAPYLVLATREGRVKKSRLTDYESARSAG--LIAINLNEGDQLIGAALASDEDDVL 670

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  A +  +     +++  +          +N +++ 
Sbjct: 671 LVSEQGQAIRFTADDEQL-RPMGRATAGVKGMRFRGDDQLLAMTVV------HDNDFLLV 723

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R G   M       R +++      +E+ I   T  G  +R
Sbjct: 724 ATSGGYGKRTAIGEYATQGRGGLGVMTFKYTPKRGKLIGALAVEEEDQIFAITSAGGVIR 783

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ IR  + R ++GVR + L +  +++++      D   +E     K           
Sbjct: 784 TEVAQIRP-SSRATMGVRLVDLGEDVELLAID-KNVEDEGEEEATAVAKGEKTLAEAQEV 841

Query: 768 DTEEITSLKNDSSVEGNISEERCQELK 794
            +       N    +        ++ +
Sbjct: 842 TSSGAPVNVNSVETDPVGPTHDYEDEE 868


>gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 904

 Score =  824 bits (2127), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/910 (38%), Positives = 515/910 (56%), Gaps = 98/910 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L   I +  
Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F  +   +R   GR 
Sbjct: 668 RQGGLIAVRLMTGENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPM-GRQ 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD++++M +V                                       
Sbjct: 727 TAGVQGMKFREGDELLAMDVV--------------------------------------- 747

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +  V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 748 ------------WGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--RGS 793

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V ++DQI+ +   G +IR  V+E++   R T+GV      K++ ++S+ R  E 
Sbjct: 794 LVGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEK 853

Query: 901 EIVDEAESTE 910
           +  + AES E
Sbjct: 854 D-DESAESGE 862


>gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
 gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM
           20098]
          Length = 907

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/905 (37%), Positives = 514/905 (56%), Gaps = 97/905 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 52  ERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYSK 111

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 112 CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 171

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 172 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 231

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 232 NMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 291

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 292 MRAVVNTEEIK-GRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSGRTGQ 350

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ ++  + +V
Sbjct: 351 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQIDV 410

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT YL  +A +R H+L GL  A+  ++EV+++IR S   E AR +LM+         
Sbjct: 411 VARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLME--------- 461

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + +VQ  AIL ++L RL  +    I +E N L  +I +  
Sbjct: 462 -----------------FLDIDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYN 504

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 505 DILAKPERQRRIVGDELDEIVAKYGDERRTKILPYSGEMNVEDLIPEENVVVTVTHSGFI 564

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 565 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 624

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G V++  L+++   
Sbjct: 625 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 681

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L +       DE++    C  ++DI+L ++ G  ++F  +   +R   GR 
Sbjct: 682 RQGGLIAVRLMTDENGENADELIGAALCNADDDIMLVSRKGMSLKFTANDEQLRPM-GRQ 740

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+    GD++++M +V                                       
Sbjct: 741 TAGVQGMKFRDGDELLAMDVV--------------------------------------- 761

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +L V+++GF KR++  ++R+  R+G G++A  +++    G+
Sbjct: 762 ------------WGDSDKDLLVVTDEGFAKRSAVSEYRLQGRNGYGVKALQLAEG--RGS 807

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V+++DQ++ +   G +IR  V E++   R T+GV +    K++ ++S+    E 
Sbjct: 808 LVGALIVSEDDQVMAIMKSGKVIRSDVAEVKRTGRNTQGVTLAKPDKNDEIISIALNAEK 867

Query: 901 EIVDE 905
           +  D+
Sbjct: 868 DDADD 872



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 93/249 (37%), Gaps = 13/249 (5%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI----VSTHTSVLFFSSLGFV 598
           +  G VK+  L+ Y + R+GG     ++  +     D  I     +    ++  S  G  
Sbjct: 665 TRSGKVKKTALAEYDSPRQGGLIAVRLMTDENGENADELIGAALCNADDDIMLVSRKGMS 724

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            K       +  P  R  A +  +    G+ +  +          ++  ++  T  G  +
Sbjct: 725 LKFTANDEQL-RPMGRQTAGVQGMKFRDGDELLAMDVV----WGDSDKDLLVVTDEGFAK 779

Query: 659 RNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R+ +S++     N  G  A++L      ++     ++++ ++   K G+ +R  ++ ++ 
Sbjct: 780 RSAVSEYRLQGRNGYGVKALQLAEGRGSLVGALIVSEDDQVMAIMKSGKVIRSDVAEVK- 838

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV      K D++IS+A+    D   D+                   +     
Sbjct: 839 RTGRNTQGVTLAKPDKNDEIISIALNAEKDDADDQNDVQPAQSEQSDSAEQQAEQPADVQ 898

Query: 776 KNDSSVEGN 784
             ++  +G 
Sbjct: 899 NVNTESDGE 907


>gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946]
 gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946]
          Length = 846

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/896 (41%), Positives = 547/896 (61%), Gaps = 87/896 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +     + I +++I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  + +
Sbjct: 1   MDNIFNTNQDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLAI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+  ++GQGNFGS+DGD  
Sbjct: 61  SSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H L E++DG + +IDNP+  L+ +ME I+GPDFPT  +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIFGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + IR  +HIEK  G+++ IVV E+PYQVNK  ++E+I  LV+EK I  I+++RDESDR
Sbjct: 241 GRVRIRAKTHIEK-KGNKDIIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKR A +D++LN LY+ T+++  F V ++A++  +P+ FTLI +L+ F+  R
Sbjct: 300 DGIRLVIELKREAMSDIVLNNLYKSTNMEVTFGVILLAIHNKEPKIFTLIELLQLFLRHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KA+ +AH+L GL IA+ N+DE++ +I+ S + ++A+  L++R     
Sbjct: 360 KTVIIRRTIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLIER----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSEVQ  AIL++RL RLTGL RD I NEL  L +EI+
Sbjct: 415 ---------------------FNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQ 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL S + L  +IK+ELL +KD+  + R T IV+   D++ ED I  E MVVT++H 
Sbjct: 454 RLSDILRSEALLNNLIKEELLELKDKFKSKRITEIVDDYDDIDVEDLIANEPMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVPL  Y  Q+RGGKG+  V   D+DF+   F+  TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPLKQYEKQKRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N++ L   E+I  I+P  + +       + F TK+G ++R  LS+F
Sbjct: 574 IPEGSRTAKGKAVVNLIQLQADEKIMAIIPTTDFD---ETKSLAFFTKNGVIKRTNLSEF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             I   G  A+ LD  D +++ +  TQE  ++ + TK G C+RF +   R   GR + GV
Sbjct: 631 KNIRSVGVRAITLDDDDGLVTAKIVTQEAKNLFIVTKKGMCIRFEVGDAREI-GRTARGV 689

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            GI    + D V+  A++ +                                        
Sbjct: 690 TGIRFKEENDCVVGAAVIYN---------------------------------------- 709

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        ++ +LTV+EKG GKRT++ ++R+ NR GKG+ A  ++   +   LV 
Sbjct: 710 ------------DQEELLTVTEKGIGKRTTAEEYRLQNRGGKGVIAMKLTP--KTADLVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           V  V+++  ++ ++  G +IRV +  IR A R T GV + S    + V S+ R  +
Sbjct: 756 VVIVDEDKDLMALTSSGKMIRVDMETIRKAGRNTSGVKVVSVEGKDVVQSLARCPK 811



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 12/240 (5%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +KR  LS ++  R  G     +   D+  VT   +     ++   +  G   + 
Sbjct: 616 FTKNGVIKRTNLSEFKNIRSVGVRAITLDD-DDGLVTAKIVTQEAKNLFIVTKKGMCIRF 674

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V         ARG   I         +              +   ++  T+ G  +R  
Sbjct: 675 EVGDAREIGRTARGVTGIRF-------KEENDCVVGAAVIYNDQEELLTVTEKGIGKRTT 727

Query: 662 LSDF--IQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
             ++        G IAMKL     +++ V    ++ D++  T  G+ +R  +  IR  AG
Sbjct: 728 AEEYRLQNRGGKGVIAMKLTPKTADLVGVVIVDEDKDLMALTSSGKMIRVDMETIR-KAG 786

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GV+ +S+   D V S+A     + +  E     +  +  +       E  +S + +
Sbjct: 787 RNTSGVKVVSVEGKDVVQSLARCPKEEDEEPEIEGMDEEGAVPQEGSLLLEETNSSEELE 846


>gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 820

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/846 (43%), Positives = 534/846 (63%), Gaps = 32/846 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +DE   +GI  V I+ E++NS+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M + G+  
Sbjct: 2   ADESSSRGILPVDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K +RI G+V+GK+HPHG+AA+Y+AL R+AQD+S R  LI+G GNFGS+DGD  AA
Sbjct: 62  DKPYKKSSRIVGDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+   A  LL D+ K+TVDF PNYD   +EPVVL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTESRMSAIALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV+DG V +ID+PD  LD LM +I+GPDFPTG VILGR GI+ AY TGRGS
Sbjct: 182 TNIPPHNLREVIDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVILGREGIRKAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R V+H E+ SG + +IVVTEIPYQ NKA ++EKIAEL REK+I  I DLRDESDR+G
Sbjct: 242 ITVRAVTHFEELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIEL+R     V+LN L+++T+LQ+ F V  +AL   +P+  TL   L+ ++  + +
Sbjct: 302 MRVVIELRRDVRPQVVLNNLFKHTALQTSFGVINLALVNGEPKVLTLRETLEHYLNHQRD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR+ L+         
Sbjct: 362 VVRRRTQYDLAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLIS-------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 414 ------------------TFGLSEEQAQAILDMRLQRLTGLEREKIEAEYQELQQRIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL+    L G+I+QE+L +K+     RRTRIV    ++ +ED I   D+V+ ++H GY
Sbjct: 456 KAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVVIAITHRGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+PLS Y +QRRGG+G + +   +EDFVT L + STH  +LFF++ G +Y  K + +P
Sbjct: 516 IKRLPLSTYHSQRRGGRGMTLINAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKAYDVP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVRRNKLSDFI 666
               QARG  ++N+L++ QGE++T ++P    D +   + Y+ FAT+ G V++  L+++ 
Sbjct: 576 EFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDTYLFFATRQGIVKKTPLAEYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + ++G IA+ L   D+++ V+      +I++ T+ G  +RFP + +R   GR + GV+G
Sbjct: 636 NVRKNGLIAINLRDDDDLVGVKLTDGTKEIMMVTRNGLAIRFPETDVRPM-GRAATGVKG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ISL++GD+VI+M +                  +      +           + + +   +
Sbjct: 695 ISLSEGDEVIAMDVAEDDHDVLVVTSRGYGKRTPVSEYRAQSRGGKGIKTLNCTPKNGHA 754

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            E C  +  ++  ++ V++ G   R    D    +R+ +G+R  +V +  E+ ++     
Sbjct: 755 IEMC--MVTEDDDVMIVTQAGVAIRIHVRDVSTLSRNTQGVRLINVDEGVEVASV--SRV 810

Query: 847 VNDNDQ 852
           V D+D+
Sbjct: 811 VKDDDE 816



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 68/171 (39%), Gaps = 6/171 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    A+    +   K +    R    + +E    +  + +     E   ++L      +
Sbjct: 448 LQQRIAELKAILADPKLLDGVIRQEILEIKERFGDERRTRIVNAEGEISEEDLIPVHDVV 507

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + ++ +G+ KR     +    R G+G+   +  + +    +  +   + +D ++  +++G
Sbjct: 508 IAITHRGYIKRLPLSTYHSQRRGGRGMTLINAHEEDF---VTGLHVTSTHDYLLFFTNRG 564

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAES 908
            +  +   ++    R  +G   V + +  + E+V ++  ++  +  +  ++
Sbjct: 565 RMYAIKAYDVPEFGRQARGTPIVNLLNIEQGEKVTAMIPVKSLDPAEIGDT 615


>gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM
           16992]
          Length = 894

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/909 (38%), Positives = 512/909 (56%), Gaps = 97/909 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM++SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R  L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+PD   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVGHQLEV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + E AR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L   I +  
Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVSKYGDERRTKILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F  +   +R   GR 
Sbjct: 668 RQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQANDEQLRPM-GRQ 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD+++ M +V                                       
Sbjct: 727 TAGVQGMKFREGDELLDMDVV--------------------------------------- 747

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +  V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 748 ------------WGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGFGVKAVQLAEG--RGS 793

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V ++DQI+ +   G +IR  V+E++   R T+GV      K++ ++S+ R  E 
Sbjct: 794 LVGAVIVEEDDQIMAIMKSGKVIRSNVDEVKRTGRTTQGVTFAKPDKNDEIISIARNEEK 853

Query: 901 EIVDEAEST 909
           +  + AE+ 
Sbjct: 854 DDDESAENA 862


>gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
 gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR]
          Length = 828

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/854 (43%), Positives = 533/854 (62%), Gaps = 64/854 (7%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++  ++NK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ++SLR +L++GQGNFGS
Sbjct: 1   MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH LL DL K+TVDF  NYDG+ + P VL  R PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL EVVDG +A+IDNPDID++ LME I GPDFPT A I GR+GI  
Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATISGRSGIVE 180

Query: 240 AYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           AY TGRG I +R  + IE      +E I+VTEIPYQVNKA ++EKIAELV+EKR+  I+ 
Sbjct: 181 AYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGISA 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G R+VIE++RG   +V+LN LY  T LQ +F +NMVAL+  +P  F L  +L
Sbjct: 241 LRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQPRLFNLRDML 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EVV RR+ Y L KAR+RAH+L GLAI++AN+DE++ +IR SP P  A+  L+
Sbjct: 301 DCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAGLI 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGR 470
            R+W   D+  +++     +             DG  +L+E Q +AIL+LRL +LTGL  
Sbjct: 361 ARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGLEH 420

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + I +E   L  +I E L IL+S  RL+ +I++EL+ +++     R+T I     D+  E
Sbjct: 421 EKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDISME 480

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+V+T+SH GYVK  PL+ Y AQRRGGKG++   M+DEDF+  L++ +TH ++L
Sbjct: 481 DLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHDTIL 540

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G +Y  KV++LP+ S  +RGK ++N+L L   ERIT I+P  +      + +VV 
Sbjct: 541 CFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRDYP---EDKFVVM 597

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT+ G +++  L ++ +    G IA+ L   DE++ V+      +I+L +  G+ VRF  
Sbjct: 598 ATRKGTIKKTPLPEYSRPRNGGIIALNLVDDDELIGVDITDGNGEIMLFSDAGKVVRFAE 657

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVRGI L +G +V+S+ +    + +                       
Sbjct: 658 EQVRSM-GRTATGVRGIRLEEGQRVVSLIVPREYEEEEAN-------------------- 696

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        +LTV+E G+GKRT   ++   +R+ KG+ + 
Sbjct: 697 -----------------------------VLTVTENGYGKRTPLSEYPAKSRATKGVVSI 727

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            VS+ N  G++V    V D ++I+L+S+KGTL+R  VNE+    R T+GV +  TA DE+
Sbjct: 728 KVSERN--GSVVGAMEVIDGNEIMLISNKGTLVRTRVNEVSTVGRNTQGVRLIRTADDEK 785

Query: 891 VVSVERIRESEIVD 904
           VV ++RI E +  +
Sbjct: 786 VVGLQRIDEIDEDE 799



 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 148/424 (34%), Gaps = 27/424 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  IR +   E            +
Sbjct: 419 EHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNFGDERKTDITAAAHDIS 478

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483
            +     + +  +    G      L+E + +       A       D I     +   + 
Sbjct: 479 MEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERLWVANTHDT 538

Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
                       + +            + ++++       R T I+              
Sbjct: 539 ILCFSTRGRIYWMKVYQLPLASRASRGKPIVNLLPLEADERITAILPTRD-------YPE 591

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +  VV  +  G +K+ PL  Y   R GG     + + D+D +  + I   +  ++ FS  
Sbjct: 592 DKFVVMATRKGTIKKTPLPEYSRPRNGG--IIALNLVDDDELIGVDITDGNGEIMLFSDA 649

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V +    ++      A G   +  + L +G+R+ +++   E E    N  V+  T++G
Sbjct: 650 GKVVRFAEEQVRSMGRTATG---VRGIRLEEGQRVVSLIVPREYEEEEAN--VLTVTENG 704

Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R  LS++   +R+ K  + +        ++        N+I+L +  G  VR  ++ 
Sbjct: 705 YGKRTPLSEYPAKSRATKGVVSIKVSERNGSVVGAMEVIDGNEIMLISNKGTLVRTRVNE 764

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +    GRN+ GVR I  A  ++V+ +  +   D D       +     +         + 
Sbjct: 765 VSTV-GRNTQGVRLIRTADDEKVVGLQRIDEIDEDEVLIDGEVVAEEGETAAEDNTENQE 823

Query: 773 TSLK 776
            S +
Sbjct: 824 GSDE 827


>gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 833

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/906 (41%), Positives = 537/906 (59%), Gaps = 87/906 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            I+  ++   + +   ++   M++S+  Y+++VI+ RA+PD+RDGLKPVHRRIL+ M Q 
Sbjct: 12  EILQPEQTHSRLLEHRTVERVMEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQN 71

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   N K+VK ARI G+VMGKYHPHG++AIYD++ R+AQDW++R  L++GQGNFGS+ GD
Sbjct: 72  GNRSNAKFVKSARIIGDVMGKYHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGD 131

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL K A  LL D+ K+TVDFR N+DGS QEP+VL A+ PN+L+NG  GIA
Sbjct: 132 PPAAHRYTEARLDKPAEELLADIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIA 191

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMAT+IPTHNLGE+VD  V +IDNP+  +D L++ ++GPDFPTGA++ G   +  AY T
Sbjct: 192 VGMATSIPTHNLGELVDATVELIDNPEATVDDLLKHVKGPDFPTGAIVYGGAPMWQAYQT 251

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ IR V++IE+T   R +IVVTE+PY VNKA ++EKIAELV+EK+I  I+DLRDES
Sbjct: 252 GRGSVTIRAVANIEETKRGRHRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDES 311

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFV 362
            R   RVVIELK+ A    +LNQLY+ T+LQ+ F  NM+AL   K P    L  IL  F+
Sbjct: 312 ARGNVRVVIELKKDAYPKKVLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFI 371

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R  VV RRT++ L KA  RAH+L G  IA+ ++DEV++ IR S   E A + L+ R  
Sbjct: 372 KHRRSVVRRRTEFELKKAEARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIAR-- 429

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q +AIL ++L RLTGL R+ I NEL  L  
Sbjct: 430 ------------------------FGLSEIQAKAILAMQLRRLTGLEREAIENELRELLA 465

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVT 541
            I++   IL+    +L IIK EL+ +K++    RR++++        DE+ I  ED VV 
Sbjct: 466 LIEKLKGILADEQEILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVL 525

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++   Y+KR   S YR Q RGGKG+ G+  ++ D +  +    TH  +LFF++ G V++ 
Sbjct: 526 LTSENYIKRTLASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRL 585

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + +P  S QA+G A +N+L L   E+IT I+ F +D    ++ Y+  AT  G +++  
Sbjct: 586 KAYEVPAASLQAKGVAAVNLLQLQPEEKITAIIKFEKDA--KDDGYLFMATVKGTIKKTP 643

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + D+  I  +G IA+KLD  DE+  ++  +  +DIL++T  GQ +RF     R   GR +
Sbjct: 644 VKDYANIRTNGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSM-GRAA 702

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRG+ L   D V+ M I                                         
Sbjct: 703 RGVRGVRLRPNDSVVGMDIAND-------------------------------------- 724

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          ++ +L +SE G+GK T   +F    R G GI+A  V+   + G +
Sbjct: 725 ---------------DRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTA--KTGPI 767

Query: 842 VAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++V  +  +D + +LVS +G  IRV + +I +  R T+GV I  T+ D+ V SV  + E 
Sbjct: 768 ISVKTIQQDDIEALLVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSER 827

Query: 901 EIVDEA 906
              +E+
Sbjct: 828 SSNEES 833


>gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
 gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093]
          Length = 917

 Score =  823 bits (2126), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/908 (39%), Positives = 511/908 (56%), Gaps = 97/908 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V +  EM+ SYL+YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y K
Sbjct: 40  ERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNK 99

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           C+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 100 CSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 159

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   +  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP H
Sbjct: 160 RMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNIPPH 219

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV DG    +D+PD   + L+E     I+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 220 NLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATILGHKGIEQAYRTGRGLIT 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 280 MRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSGRTGQ 338

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +VA + +V
Sbjct: 339 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVAHQIDV 398

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM          
Sbjct: 399 VARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLM---------- 448

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L   I +  
Sbjct: 449 ----------------DLLDVDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYE 492

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +       RRTRI+    +M  ED I  E++VVTV+H G++
Sbjct: 493 DILAKPERQRQIVGDELDEIVSRYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHAGFI 552

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF+  G VY+ K + LP 
Sbjct: 553 KRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPE 612

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E      Y+V ATK G V++ +LS++   
Sbjct: 613 GSRDSKGQHVANLLQFAPDEHIQTVLSIPNYEV---AEYLVLATKSGKVKKTRLSEYDSP 669

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRN 720
            + G IA++L +       DE++    C   +DI+L ++ G  ++F      +R   GR 
Sbjct: 670 RQGGLIAVRLMTDENGEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPM-GRQ 728

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD ++SM +V                                       
Sbjct: 729 TAGVQGMKFREGDSLLSMDVV--------------------------------------- 749

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +  V+ +GF KRT+  ++R+  R+G G++A  + +    G 
Sbjct: 750 ------------WGQTDKDLFVVTNEGFAKRTAISEYRLQGRNGYGVKALQLVEG--RGE 795

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V+++DQ++ +   G +IR  VNE+    R T+GV +    K + ++S+ R  E+
Sbjct: 796 LVGALVVDESDQVLAIMKSGKVIRSNVNEVNRTGRTTQGVTLAKPDKGDEIISIARNAET 855

Query: 901 EIVDEAES 908
           E   E ++
Sbjct: 856 EDELEEQA 863


>gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
 gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176]
          Length = 856

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/920 (38%), Positives = 518/920 (56%), Gaps = 98/920 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+II         +    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEENIIMVPG-SGTKVIERDVKQEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G +    Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPQHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ K A  +L D+ KDT+D+ PN+D + +EP VL +R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV G  A++DNPDIDL  LME ++GPDFPTG +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + I +    R +I++TEIPY VNK  ++E IA+LV++KRI  I+DL 
Sbjct: 240 YATGRGKITLRGRAEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLN 299

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE S R G ++VIE+K+ A+  V+LNQLYRYT LQ    V M+AL+   P+  +L  +++
Sbjct: 300 DESSSRTGMKIVIEIKKDANPQVVLNQLYRYTQLQDTVGVIMLALDDGVPKIMSLKTVME 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ F+ EV+ RRT + L KA++R H+L GL  AV  +DE++  IR              
Sbjct: 360 RYIDFQMEVIRRRTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKG---------- 409

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                            +             E+Q  AI++L+L RL GL    I  EL  
Sbjct: 410 ---------------GFAEARQAVMDNFGFDELQADAIVKLQLGRLAGLEILKIEQELGE 454

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +  DILS+   +  I+K +L ++ D+    RRT I     +++ ED I  E  +
Sbjct: 455 LREAIADYKDILSNDEHVKRIVKTDLQTLADKYGDERRTSIEAVSGEVDIEDLIPEETCI 514

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++H GY+KR  L  Y+AQ RGG+G  G+  +D+DF  +LF+ STH  +LF +  G VY
Sbjct: 515 FTLTHEGYIKRTTLDTYQAQNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVY 574

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K +++P GS  A+G  ++N+L L +GE++T ++     ++  +N Y+   T+ G ++R
Sbjct: 575 RLKGYQVPEGSRTAKGSHIVNLLQLQEGEKVTLMLQ-QSAKADEDNTYLTMVTRQGLIKR 633

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS F  I ++G IA+ L+  D ++        ++I++ T  G  + F  S  R   GR
Sbjct: 634 TPLSQFRNIRKAGLIAIGLNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAM-GR 692

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              GVR I L +GD VI   +                                       
Sbjct: 693 TGHGVRVIRLREGDYVIGAGVCRPG----------------------------------- 717

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +LT++E G G+R+   D+RI+ R G GIR          G
Sbjct: 718 ------------------ATVLTITEDGKGRRSRVDDYRITKRGGLGIRNY------AKG 753

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR- 898
            +  +  V++ D +IL+S  G LIR+  ++I + SR   GV +    + ++V  V R+  
Sbjct: 754 GVAGIKIVDETDDLILISANGILIRLHASDINVQSRYGSGVRVMRLGEGDKVAMVARVDR 813

Query: 899 ---------ESEIVDEAEST 909
                    E++  DE+E +
Sbjct: 814 DNEAETAKVEADAGDESEPS 833



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 16/257 (6%)

Query: 533 IVREDMVVT--VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
              ED      V+  G +KR PLS +R  R+ G    G+   D    + L        ++
Sbjct: 614 KADEDNTYLTMVTRQGLIKRTPLSQFRNIRKAGLIAIGLNEGDSLVWSHL--TGGGDEII 671

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G                      + ++ L +G+                   V+ 
Sbjct: 672 VATHDGAAIHFTESGARAMGRTG---HGVRVIRLREGDY------VIGAGVCRPGATVLT 722

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T+ G  RR+++ D+ +I + G + ++  ++  +  ++   + +D++L +  G  +R   
Sbjct: 723 ITEDGKGRRSRVDDY-RITKRGGLGIRNYAKGGVAGIKIVDETDDLILISANGILIRLHA 781

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S I V   R   GVR + L +GD+V +M   +  D + +                     
Sbjct: 782 SDINV-QSRYGSGVRVMRLGEGDKV-AMVARVDRDNEAETAKVEADAGDESEPSAEELAA 839

Query: 771 EITSLKNDSSVEGNISE 787
              + + D + +    E
Sbjct: 840 IEAAERADEAADVPDDE 856


>gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis]
 gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus]
          Length = 742

 Score =  823 bits (2125), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/823 (43%), Positives = 512/823 (62%), Gaps = 84/823 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLGVDKGEWINAIIPIREFG---DDEFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + DQV+ M IV                                             
Sbjct: 692 ITLGEEDQVVGMEIVEEDVN---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                        +L V++ G+GKRT   ++R+ +R GKG++ 
Sbjct: 712 -------------VLIVTKNGYGKRTPIDEYRLQSRGGKGLKT 741



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 71/206 (34%), Gaps = 9/206 (4%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICY 754
             T  G   R P S  +    R   GV+G+     D V  +      D      ++   Y
Sbjct: 510 TLTHNGYIKRLPASTYKT-QNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVY 568

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                         I+          ++F+   +++G  KRT  
Sbjct: 569 RTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDEFLFFTTKQGISKRTPL 628

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             F  +N    G+ A  + +      +++V   + +  II+ +  G LIR    ++R   
Sbjct: 629 SSF--ANIRTNGLIAISLRE---EDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMG 683

Query: 875 RATKGVVIFSTAKDERVVSVERIRES 900
           R   GV   +  ++++VV +E + E 
Sbjct: 684 RNAAGVKAITLGEEDQVVGMEIVEED 709



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 11/250 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
              +++        +  T +G ++R   S +   NR   G   M  +  D +  + T + 
Sbjct: 495 SIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTST 554

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYD 749
            + IL  T  G+  R     I     R + G+  I+L    KG+ + +  I+   +   D
Sbjct: 555 HDHILFFTNKGKVYRTKGYEI-PEYSRTAKGIPIINLLGVDKGEWINA--IIPIREFGDD 611

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           E + +       +R        I +    +       E     L   ++ I+  +  G  
Sbjct: 612 EFLFFTTKQGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGML 671

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            R +  D R   R+  G++A  + +      +V +  V ++  +++V+  G   R P++E
Sbjct: 672 IRFNEQDVRSMGRNAAGVKAITLGE---EDQVVGMEIVEEDVNVLIVTKNGYGKRTPIDE 728

Query: 870 IRIASRATKG 879
            R+ SR  KG
Sbjct: 729 YRLQSRGGKG 738



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 100/239 (41%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++  +I    K G   RF +S       + +  +  + L      
Sbjct: 386 IALDHLDEVITLIRSSKTAEI---AKQGLMERFGLSE------KQAQAILDMRLQRLTGL 436

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++      ++   A+    +   + +    R    + +E  + K  + +     E  
Sbjct: 437 EREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESI 496

Query: 790 CQELKLKEQFI-LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             E  + EQ I +T++  G+ KR  +  ++  NR G+G++    +  + +  L      +
Sbjct: 497 EDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHL---LTTS 553

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            +D I+  ++KG + R    EI   SR  KG+ I +     K E + ++  IRE    +
Sbjct: 554 THDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWINAIIPIREFGDDE 612


>gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
 gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239]
          Length = 827

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/914 (37%), Positives = 509/914 (55%), Gaps = 91/914 (9%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M+  +  +D  +     +T+  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+
Sbjct: 1   MSSDVPDADPSDVGAAQVTNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + GV  N  + K + + GE MG YHPHG++AIYD LARMAQD+S+R  L++GQGNFG
Sbjct: 61  AMHEAGVTSNSAHRKSSSVVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGDPPAA RYTE R+   A  LL D+ +DTVDF  NYD   +EP VL A +PN+LVNG
Sbjct: 121 SVDGDPPAAMRYTEARMSPIAEELLADIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+TNIP HNLGEV+D  VA+I  PD  ++ LME ++GPDFPTGA I+GR  + 
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATVALIKEPDCTVEDLMEHVKGPDFPTGANIVGRNAVH 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRG + +R    +++  G   +IV++E+P+Q NK+ ++E+IAE V +  I  I D
Sbjct: 241 KAYKTGRGRVRVRAEFEVDEEEG---RIVISELPFQQNKSRLVERIAEDVNDGSIEGIRD 297

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G RVV+ELKR A A+V+ NQL   + L+  F V  +AL    P+   L   L
Sbjct: 298 LRDESDRDGIRVVVELKRDAMAEVVKNQLLE-SHLERTFGVINLALVDGSPQVLDLKQTL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R +VV RR+++ L +  DRAH+L G   A+  +D+VV  I+ S + + A+  L 
Sbjct: 357 EYYVEHRRDVVRRRSEHELAEREDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAAL- 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                    +     SE Q   I+ ++L  LT +   +I +E  
Sbjct: 416 -------------------------EADYEFSEAQAEHIVRMQLGSLTSMETQEIESEYE 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +   I+    IL     L  +I  EL  +KDE D  RRT  +E + D+  ED I  E+ 
Sbjct: 451 DVTARIERLETILGDPDELDQVIITELREIKDEYDDERRTSFIEDVGDVTHEDLIPEEEC 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           VV +S   Y+KR+ L  +RAQ RGGKG  G  +++ D V+ +F  ++H  +L F++ G +
Sbjct: 511 VVVMSEDDYIKRMSLDTFRAQNRGGKGIIGTDLKEGDRVSSVFAANSHDYLLVFTNHGQI 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P  S  ARGK+ +N++ L+ GE I  ++   + +   ++ ++   T+ G ++
Sbjct: 571 YELKTYEIPEMSRTARGKSAVNLIDLDDGEEIEAVVNTDDLD---DDEFLTMVTRDGYIK 627

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  +  F  I  +G  A++L+  DE++ VE      DI++ ++ G  +RF  S  R   G
Sbjct: 628 RTAVDQFGNIRSTGIRAIRLEDGDELVDVEVTNGGTDIVIGSRNGMAIRFAESEARAM-G 686

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L +GD V  +A +     +                               
Sbjct: 687 RTARGVIGIDLREGDAVAGVAAIDEDRHN------------------------------- 715

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                               ++LTV+E G+GKR+   ++R+ +R+GKG+        N  
Sbjct: 716 --------------------WVLTVTENGYGKRSDLDEYRLQSRNGKGLIDIKTGDRN-- 753

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G  VA+  V   D ++ +SD G ++R  V EI    R TKGV++ +   D+ V SV+ + 
Sbjct: 754 GEAVAIEAVTYGDHLLAMSDNGQIMRTRVEEISTVGRNTKGVIVMNLDPDDTVASVDIVS 813

Query: 899 ES--EIVDEAESTE 910
           ES      + E  E
Sbjct: 814 ESVHGGETDVEGDE 827


>gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400]
 gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 909

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 385/927 (41%), Positives = 550/927 (59%), Gaps = 65/927 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I+ ++I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   SSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  LI+GQGNFGSVDGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+QK AH LL DL K+TVDF PNYDG+   P VL  R PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV GC+A+I++P + ++ LME I GPDFPT A I GR GI +AY TGRG  ++R  
Sbjct: 186 NLTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASINGRKGIIDAYNTGRGRAIMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     RE+I+V EIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG   +V+LN LY  T +Q  F +NMVAL   +P+ F L  +L+ F+  R EVV RRT
Sbjct: 306 IKRGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAHVL  LAIA+AN+D ++ +I+ SP P  A+ +L+ + W    ++ +++ 
Sbjct: 366 VFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGMLEK 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AILELRL RLTGL  D I  E   L + I 
Sbjct: 426 AGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELLVLIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             L IL + SRL+ +IK+EL  + ++    RRT I    +DM  ED I  ED+VVT+SHL
Sbjct: 486 GLLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSLEDLINEEDVVVTLSHL 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGGKG++   ++DEDFV  L + +TH ++L FS  G +Y  KV++
Sbjct: 546 GYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGKMYWLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARG+ ++N+L L+ GE IT I+P  E     ++ Y++ AT HG V++  L+ +
Sbjct: 606 LPLASRTARGRPIVNLLPLSDGEHITAILPVREYA---DDKYIIMATAHGTVKKTALTAY 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------------- 711
                +G IA+ L   D+++ V+     +DI+L +  G+ VRF                 
Sbjct: 663 SNPRANGIIAVNLKDGDQLIGVDITEGSDDIMLFSNEGKVVRFNEKARDSETGEVKIDAE 722

Query: 712 ------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                 A+R   GR + GVRGI L  G +V+S+ +     A            +      
Sbjct: 723 TGEEIIALRPM-GRTATGVRGIKLDAGQKVVSLIVPKGDGAILTVTENGYGKRTELSEYP 781

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           +        +    S          Q     E  I+ +S KG   RT +    I  R+ +
Sbjct: 782 AKSRGTKGVVSIKVSERNGEVVGAVQVGTFDE--IMLISNKGTLVRTPAEGVSIIGRNTQ 839

Query: 826 GIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G+     ++  +   +V +  + +   ++++   ++G +I  PV+++             
Sbjct: 840 GVTIIRTAEDEK---VVGLQRIEEIQTEELL--DEEGNVI--PVSDV------------I 880

Query: 884 STAKDERVVSVERIRESEIVDEAESTE 910
                        + ++E  D+ E+T+
Sbjct: 881 D----------AEVTDAESTDDVEATD 897



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 17/274 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++  +  G VK+  L+ Y   R  G     V ++D D +  + I      ++ F
Sbjct: 639 YADDKYIIMATAHGTVKKTALTAYSNPRANG--IIAVNLKDGDQLIGVDITEGSDDIMLF 696

Query: 593 SSLGFVYKEK-----------VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           S+ G V +                   G      + +    +  +G ++           
Sbjct: 697 SNEGKVVRFNEKARDSETGEVKIDAETGEEIIALRPMGRTATGVRGIKLDAGQKVVSLIV 756

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILL 698
              +  ++  T++G  +R +LS++   +R  K  + +       E++        ++I+L
Sbjct: 757 PKGDGAILTVTENGYGKRTELSEYPAKSRGTKGVVSIKVSERNGEVVGAVQVGTFDEIML 816

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR P   +    GRN+ GV  I  A+ ++V+ +  +     +           
Sbjct: 817 ISNKGTLVRTPAEGV-SIIGRNTQGVTIIRTAEDEKVVGLQRIEEIQTEELLDEEGNVIP 875

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +          E T     +  +   + +  QE
Sbjct: 876 VSDVIDAEVTDAESTDDVEATDPDEAKTGDDEQE 909


>gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010]
 gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010]
          Length = 859

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 372/847 (43%), Positives = 518/847 (61%), Gaps = 18/847 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S+ I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  WN  Y K 
Sbjct: 7   ELDSIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RYTE R
Sbjct: 67  ARIVGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K  H +L DL K+TVDF  NYD S  EP VL  + P +LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++  +A+IDNP+I +  LME I GPDFPT A+I G  GI  AYATGRG + IR  +
Sbjct: 187 LTEVLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGARGIAEAYATGRGRVHIRARA 246

Query: 255 HIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      ++ IVV E+PYQVNKA +LEKIAELV+EK+I  I  LRDESD+ G R+VI 
Sbjct: 247 DIETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIV 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+RG   +V+LN LY+ T +Q++F +NMVA+   +P    L  +L AF+  R EVV RR+
Sbjct: 307 LRRGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQPRTLNLKDVLAAFIRHRREVVTRRS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA A+AN+DEV+ +I+ SPNP  A+  L+ R W +  I +++  
Sbjct: 367 IFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGE 426

Query: 434 IDDSSYTIGS--------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   +LS  Q +AIL++RL RLTGL +D I  E   +   I 
Sbjct: 427 AGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVLDLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L ILS    L+ +I+ EL+++  E    RRT I+   LD+  ED I  E+MVVT+SH 
Sbjct: 487 ELLAILSDPDNLMAVIRDELVAINAEYGDERRTEILANHLDLTLEDLITEEEMVVTLSHA 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   L  Y+AQ+RGGKG++   M+DEDF+  LFI +TH ++L FSS G VY +KV+ 
Sbjct: 547 GYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGKVYWKKVYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G   ARGK ++N+L L +GERI  ++   E E    + ++  AT  G V++  L D+
Sbjct: 607 LPQGGRTARGKPIVNLLPLEEGERINAVLSIREFE---ADKFIFMATASGTVKKTPLVDY 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L   D+++ V      +DI+L +  G+ +RFP + +R   GR S GVR
Sbjct: 664 SRPRANGIIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRFPEADVRSM-GRVSRGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ +A  +++IS+ I     A            +               +   +S     
Sbjct: 723 GMRIADNEKIISLIIAQEEGAILTATEFGYGKRTNLAEYRVQGRGGQGIISIQTSDRNGS 782

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                Q     E  I+ ++  G   RT   D  +  R+ +G+R  ++SK  +   LV V 
Sbjct: 783 VVGAVQV--CDEDQIMLITNGGTLVRTPVKDVSLVGRNTQGVRLINLSKNEK---LVGVE 837

Query: 846 PVNDNDQ 852
            V ++++
Sbjct: 838 RVLEDEE 844



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 73/403 (18%), Positives = 155/403 (38%), Gaps = 36/403 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + R+   ++  L   +++ D ++ +IR       A     +R+      + L + +D 
Sbjct: 475 LQEYREVLDLIGELLAILSDPDNLMAVIRDELVAINAEYGDERRT------EILANHLDL 528

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRS 495
           +   + ++  M ++          +L       R    +   +    +  E L I ++  
Sbjct: 529 TLEDLITEEEMVVTLSHAGYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHD 588

Query: 496 RLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV----------- 542
            LL       +  K         RT   + ++++   +   R + V+++           
Sbjct: 589 TLLCFSSTGKVYWKKVYELPQGGRTARGKPIVNLLPLEEGERINAVLSIREFEADKFIFM 648

Query: 543 -SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+ PL  Y   R  G     V ++D+D + D+ +    + ++ FSS G V + 
Sbjct: 649 ATASGTVKKTPLVDYSRPRANG--IIAVDLKDDDQLVDVAVTDGMSDIMLFSSTGKVIRF 706

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +      +RG   +         RI           +     ++ AT+ G  +R  
Sbjct: 707 PEADVRSMGRVSRGVRGM---------RIADNEKIISLIIAQEEGAILTATEFGYGKRTN 757

Query: 662 LSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           L+++    R G+  + + + D     +       E+ I+L T  G  VR P+  +    G
Sbjct: 758 LAEYRVQGRGGQGIISIQTSDRNGSVVGAVQVCDEDQIMLITNGGTLVRTPVKDV-SLVG 816

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           RN+ GVR I+L+K ++++ +  VL  + D +  +      S +
Sbjct: 817 RNTQGVRLINLSKNEKLVGVERVLEDEEDAELPVVDDNTDSEE 859


>gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
 gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC
           27678]
 gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022]
          Length = 889

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/896 (38%), Positives = 512/896 (57%), Gaps = 97/896 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I    +  EM++SYL+YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y K
Sbjct: 38  ERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYSK 97

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEVMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTEC
Sbjct: 98  CARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTEC 157

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L NG  GIAVGMATNIP H
Sbjct: 158 RMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNIPPH 217

Query: 194 NLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           N+ EV +G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I 
Sbjct: 218 NMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATILGHKGIEQAYRTGRGLIT 277

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V + E+    R  +V+TE+PYQVN   ++  I E VR+ +I  IAD+RDE S R G 
Sbjct: 278 MRAVVNTEEIK-GRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSGRTGQ 336

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + +V
Sbjct: 337 RLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLDV 396

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT YL  +A +R H+L G   A+  +DEV+ +IR S + ETAR  LM          
Sbjct: 397 IARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLM---------- 446

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + + EVQ  AIL ++L RL  L R  I +E N L  +I +  
Sbjct: 447 ----------------DLLDVDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYN 490

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+   R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+H G++
Sbjct: 491 DILAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVVVTVTHSGFI 550

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP 
Sbjct: 551 KRTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPE 610

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G V++  L+++   
Sbjct: 611 GSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEV---AKYLVLATRSGKVKKTALAEYDSP 667

Query: 669 NRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            + G IA++L +       DE++    C  E+DI+L +KLG  ++F      +R   GR 
Sbjct: 668 RQGGLIAVRLMTDENGENADELIGAALCNAEDDIILVSKLGMSLKFQADDEQLRPM-GRQ 726

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD++++M +V                                       
Sbjct: 727 TAGVQGMKFREGDELLAMDVV--------------------------------------- 747

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           ++ +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 748 ------------WGDSDKDLLVVTNEGFAKRTAISEYRLQGRNGYGVKAVQLAEG--RGS 793

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           LV    V ++DQ++ +   G +IR  V E++   R T+GV +    K++ ++S+ R
Sbjct: 794 LVGAVIVEEDDQVMAIMKSGKVIRSNVAEVKRTGRNTQGVTLAKPDKNDEIISIAR 849



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++   ADY++ +   +           +       +  + +     E   ++L  +E  +
Sbjct: 482 LMRKIADYNDILAKPERQRKIVGDELDEIVAKYGDERRTRILPYSGEMNVEDLIAEENVV 541

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +TV+  GF KRT + ++R  +R GKGI+   + + + +      F  + ++ ++  ++KG
Sbjct: 542 VTVTHSGFIKRTKADEYRAQHRGGKGIKGAKLREDDVVDH---FFLTSTHNWLLFFTNKG 598

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEI 902
            + R+   E+   SR +KG  + +      DE + +V  I   E+
Sbjct: 599 RVYRLKAYELPEGSRDSKGQHVANLLQFGPDEAIQTVLSIPNYEV 643


>gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424]
 gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424]
          Length = 815

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/898 (41%), Positives = 551/898 (61%), Gaps = 85/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT  +IT E++NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+   ++G+  +K
Sbjct: 2   EDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + GEVM KYHPHG+ A Y  + R+AQD++ R  +++GQGNFGS+DGD  AA R
Sbjct: 62  PYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVD + NYDG+ QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG VA+ DN +I +  LM  I+GPDFPTGA +LGR+GI  AY TGRGSI+
Sbjct: 182 IPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLLGRSGIVKAYTTGRGSII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG + IE+    +E+IV+TEIPYQVNKA ++EKIAEL R+K+I  + DLRDES+ +G R
Sbjct: 242 MRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +++VILN LY+ T LQS F VNM+AL    P+   L   L  ++  ++EVV
Sbjct: 302 IVIELRRDVNSNVILNNLYKLTPLQSSFGVNMIALVNGVPKLLNLKEALYHYLEHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT++ LNKA+ RAH+L GL IA+ N+D ++ +IR S   E A+  LM++         
Sbjct: 362 VRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L++VQ +AIL++RL RLTGL RD I  E   L   I +  D
Sbjct: 413 -----------------FSLTDVQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLED 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   R++ I+K+ELL +KD+    RR+ I+E  +  +++ED I +E +++T+SH  Y+
Sbjct: 456 ILAKPERVIEIVKEELLEIKDKYGDKRRSVIIEGQIDQIDNEDLIEKEQIIITLSHNQYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S Y++Q RGG+G +G+   DED +  +   STH  +LFF+  G VY  K + +  
Sbjct: 516 KRLAASTYKSQGRGGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQ 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G  +IN+L + + E++ +I+   +      +  ++F+TK G ++++KL D+  I
Sbjct: 576 MSRQSKGIPIINLLEIEKEEKVNSIIAISDL--QEEDTSLIFSTKFGIIKKSKLGDYASI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            + GKIA+KLD  D ++ V+  T + DI++ T  GQ +R     +R   GR S GV+GI+
Sbjct: 634 LKKGKIALKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQM-GRVSRGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L+  D V+ M +V  +                                            
Sbjct: 693 LSPDDYVVGMEVVDESKK------------------------------------------ 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILTV+E G GK + S +F + NR GKG++   V+K  + G +VAV  + 
Sbjct: 711 -----------ILTVTENGIGKISKSTEFNVINRGGKGVKVAKVTK--KTGKIVAVKSIT 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            N+ +++++D+G +IR+ ++ I    R   GV + +   D++V +V    + E  ++ 
Sbjct: 758 GNEDLMIMTDQGIIIRIDISTISTLGRTATGVKVINLVDDQKVATVTLAEKEENYEDD 815


>gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
 gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469]
          Length = 788

 Score =  822 bits (2124), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/884 (37%), Positives = 508/884 (57%), Gaps = 98/884 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +I +EM++SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G+  NK Y K 
Sbjct: 2   KIQERAIDEEMKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEVMGKYHPHG+ AIY+ LARMAQD+S+R LL++GQGNFGS+DGD PAA RYTE R
Sbjct: 62  ARIVGEVMGKYHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEAR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L D+  +TVDF PN+DG+ +EPVVL AR PN+L+NG  GIAVGMATN+P HN
Sbjct: 122 LAKIAEEMLKDIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+VD  + +ID+PD D+D L+E ++GPDFPTG  I+G  G+ +AY TG+G I +R   
Sbjct: 182 LSEIVDALIYLIDHPDADVDELLEFVKGPDFPTGGTIIGYEGLVDAYRTGKGKIKVRAKY 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +++     ++I++ EIPY+VNK+ +L+KIA LVRE ++  I+DL+DESDR+G R+VI++
Sbjct: 242 EVKE-----DRIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKV 296

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR  + ++++NQL  +T L+  + +  + L    P    L  ++K ++  R EV+VR+  
Sbjct: 297 KRDMNPEIVVNQLLEHTDLEVTYGIINLVLVDGVPRILNLKELMKEYIRHRMEVLVRKLN 356

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA++R H++ GL  A+  +DEV+  I+ S + + A   L+                
Sbjct: 357 YQLRKAKERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLV---------------- 400

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      ++  SEVQ +AIL++RL +LT +  D +  E   L  +IK    +L+S 
Sbjct: 401 -----------SLGFSEVQAKAILDMRLQKLTSMEIDALIEENRKLEEDIKNMESLLASE 449

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  G+IK+EL  +K+     RRT I +  +   + ED I  E+ V+ ++  GY++R+ +
Sbjct: 450 EKRYGVIKEELFEIKNLYGDKRRTDIYKGAVERRDIEDLIPNEEAVIILTEKGYIRRLKV 509

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGGKG   +   + D   D+   + H  ++FF+  G VY  K + +P G+ ++
Sbjct: 510 DEYRAQGRGGKGV-MINYGEGDLPRDITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRS 568

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RG+A+INI+    G  +  ++   +      + Y+ F T++G V+R  L +F     +G 
Sbjct: 569 RGRAIINIIP-KLGSDVIRMLSLNDF-----SGYLFFITRNGIVKRTSLEEFSNPRSTGI 622

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+  D  DE++ V+      DI L TK G+ +RF    +RV  GR + GV GI L  GD
Sbjct: 623 RAIIFDEDDELVDVKITHGGEDIFLFTKYGKAIRFSEDDVRVM-GRTARGVIGIKLQDGD 681

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VIS A+                                                     
Sbjct: 682 EVISSAV----------------------------------------------------- 688

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + +  ++  V   G+GKRT   ++R   R G G+R   +   N    +V      +ND+ 
Sbjct: 689 ESEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNAN----VVKSLLTTENDEA 744

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +L++  G  IR+ + ++ +  R  +GV +      + VV+V ++
Sbjct: 745 LLLTKNGMSIRIKLRDVSVMGRNARGVKLIKLDDGDEVVNVAKL 788


>gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836]
 gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836]
          Length = 907

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/917 (37%), Positives = 506/917 (55%), Gaps = 91/917 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  IS        I  + +  EMQ SYL YA+ VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MTETPISPG---HDRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+RI G+VMG+YHPHG++AIYD L R+AQ W +R  +I+ QGNFGS 
Sbjct: 58  YDGGYRPDRGFSKCSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  ++ D+ ++TVDFRPNYDG  QEPV+L +R+PN+LVNG  
Sbjct: 118 GNDPAAAMRYTECRLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSA 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV       ++NPD   +      ME I+GPDFP GA+I+G  G
Sbjct: 178 GIAVGMATQIPPHNLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIVGYKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGS+ +R V  IE+ +  R  +VV+E+PY VN   + +KIAELV   ++  I
Sbjct: 238 IDDAYRTGRGSVTMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RD+ S R G R+VI LKR A   V+LN LY++T LQ  F  NM+AL    P   +L 
Sbjct: 298 ADIRDDTSSRTGQRLVIVLKRDAQPRVVLNNLYKHTQLQDTFGCNMLALVDGVPRTLSLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +  ++  + EV+ RRT+Y L +A   AHV  G   A+  LDEV+ +IR SP+ + AR+
Sbjct: 358 LFITHWIDHQIEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQ 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + E+Q +AIL+++L RL  L R  I +
Sbjct: 418 GLIS--------------------------LLDIDEIQAQAILDMQLRRLAALERQKIID 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            LN L   I +  DIL+   R   I++ EL  + D+    RRT I+    D+  +D +  
Sbjct: 452 RLNELEAVIADLEDILADPVRQRHIVRDELAEIVDKFGDDRRTTIIAADGDLSVQDLVPD 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR Q RGGKG  G  MR ED +   F  + H  +LFF++ 
Sbjct: 512 EDVVVTITRGGYAKRTKTDLYRVQNRGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTK 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ KVW+LP  +  A+G  +  +LS    E I  ++   + +      Y+V ATK G
Sbjct: 572 GRVYRAKVWQLPESARDAKGSHVAGLLSFQPDEEIAQVLTLRDYD---QADYLVLATKKG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
            V++  L D+    +SG IA+      DE++  +  + E+D+LL +K GQ +RF  +   
Sbjct: 629 LVKKTPLRDYDSARQSGIIAVNFREADDELIGADLASAEDDLLLVSKKGQSIRFTANDEQ 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV G+    GD+++SM+++                               
Sbjct: 689 LRPM-GRATSGVTGMKFRAGDELLSMSVIRAGS--------------------------- 720

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                +   QF+ TV++ G+ KR+   ++R   R G GI+A  +
Sbjct: 721 ---------------------EEDTQFVFTVTDAGYAKRSRVSEYRQQGRGGLGIKAVKL 759

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  +E G+LV    V D+DQ++ +   G ++R  V+ + +  R T GV        + VV
Sbjct: 760 N--DERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSVPVKGRDTMGVRFAGVGASDAVV 817

Query: 893 SVERIRESEIVDEAEST 909
           ++ R  +  + DE ++ 
Sbjct: 818 AIARNTDLTVADELDAA 834



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 93/267 (34%), Gaps = 7/267 (2%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D +V  +  G VK+ PL  Y + R+ G         D++ +      S    +L  S  G
Sbjct: 619 DYLVLATKKGLVKKTPLRDYDSARQSGIIAVNFREADDELIGADL-ASAEDDLLLVSKKG 677

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +    G+ +   M      S  +  +V   T  G 
Sbjct: 678 QSIRFTANDEQL-RPMGRATSGVTGMKFRAGDELL-SMSVIRAGSEEDTQFVFTVTDAGY 735

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R+++S++ Q  R G     +   DE    +        + +L     GQ VR  + ++
Sbjct: 736 AKRSRVSEYRQQGRGGLGIKAVKLNDERGSLVGALIVVDSDQVLAIKTSGQVVRSRVDSV 795

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR+++GVR   +   D V+++A         +              ++  +   + 
Sbjct: 796 -PVKGRDTMGVRFAGVGASDAVVAIARNTDLTVADELDAAAGTDALVVDGVVQDEAGSLD 854

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFI 800
            +  DS       +      +   + +
Sbjct: 855 GVVVDSGEVDGAQDVDGSTTEPAPESV 881


>gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 818

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/902 (39%), Positives = 531/902 (58%), Gaps = 95/902 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EDNVFDKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      +  ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     +  I+VTE+PY VNKA ++EKIA+LV+EK+I  I  L DES
Sbjct: 242 GRGKIRVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGIL 358
            R+G R+ IEL+R  +A+VILNQLY++T LQ  F V M+A+        +P+   L+ +L
Sbjct: 302 SREGMRINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEML 361

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++  +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV+ IIR S + + A+  LM
Sbjct: 362 DYYLKHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLM 421

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L++ Q +AI+++RL  LTGL R+ +  E  
Sbjct: 422 AR--------------------------FELTDAQAQAIVDMRLRTLTGLERERLEAEYA 455

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L   I E   IL+    LLG+IK+E+  + D+    R+T I     D   ED I  E++
Sbjct: 456 ELMKRIGELKAILADEKLLLGVIKKEITEISDKYGDDRKTSIGFDEFDFTVEDLIPEENV 515

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+T++ LGY+KR+    +++Q RGGKG  G+   DED + +LF+ STH  ++FF++LG V
Sbjct: 516 VITMTRLGYIKRMTPDNFKSQNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKV 575

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P     ARG A+IN+L L   E+IT ++P  E      + Y+  ATK G V+
Sbjct: 576 YRLKAYEIPEAGRTARGTAIINLLQLAPEEKITAVIPIREYN---EDHYLFMATKKGLVK 632

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  ++D+  + ++G  A+ L   DE++ V+      DILL T  GQC+RF  + +R   G
Sbjct: 633 KTPITDYANVRKTGLAAISLREDDELIEVKFTDNHKDILLVTAYGQCIRFHETDVRS-TG 691

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S+GV GI+L  GD+V+ M +    +         M                       
Sbjct: 692 RVSMGVIGINLMDGDEVVGMQLDCQGEYMLIVSEKGMGK--------------------- 730

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                 LT  E          +F++ NR GKG++   + +  + 
Sbjct: 731 ----------------------LTAME----------EFKVQNRGGKGVKCYKILE--KT 756

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G ++A   VN +  I++++ +G +I++P ++I + +R T GV + +  KD +V S+ ++R
Sbjct: 757 GNVIAAKAVNYDSDIMIINTEGIIIQMPCSDISVLNRITSGVKLMNLEKDVQVASITKVR 816

Query: 899 ES 900
           ES
Sbjct: 817 ES 818


>gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
 gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2]
          Length = 894

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849
            R+ +G+     S+     ++V +  +++
Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
 gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c]
          Length = 830

 Score =  822 bits (2123), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/903 (39%), Positives = 505/903 (55%), Gaps = 95/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  + I  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MVDVLPPP----GDRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KC+RI G+VMG YHPHG+ +IYD + R+AQ WSLR  L++G GNFGS 
Sbjct: 57  YDGGYRPDRGYFKCSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+   A  +L D+  DTVDF PNYDG  QEP+VL +R+PN+LVNG G
Sbjct: 117 GNDPPAAMRYTEARMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    ++NPD   + L+E    II+GPDFPT  +I+GR G
Sbjct: 177 GIAVGMATNIPPHNLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIVGRQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E+    R Q+VVTE+PYQVN   + EKIAELVR+ RI  I
Sbjct: 237 IEDAYRTGRGSIRMRAVVNVEENK-GRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +D+RDE S R G R+VI+LKR A A V+LN LY++T LQ  F  NM+A+    P    L 
Sbjct: 296 SDVRDETSARIGQRLVIDLKRDAVAKVVLNNLYKHTQLQDTFGANMLAIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA++R HVL GL IA+ +LD+V+ +IR + + + AR 
Sbjct: 356 QMIRYYVEHQVDVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARG 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM R                            LSE+Q  AIL+++L RL  L R  I +
Sbjct: 416 QLMTR--------------------------YSLSEIQATAILDMQLRRLAALERQRIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++ E   IL+S  R   II +EL  V D+    RRTRIV    +M  ED I +
Sbjct: 450 EAAELRAKVTELEAILASPQRQREIIGEELKEVVDKFGDERRTRIVPFEGEMSIEDLIAQ 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YR+Q+RGGKG  G  +R++D V   F+ +TH  +LFF++ 
Sbjct: 510 EDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNK 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K   LP  +  A+G+ + NIL+  Q ERI  +M   +        Y+V ATK G
Sbjct: 570 GRVYRAKAHELPEQARSAKGQHVANILAFGQDERIAEVMAIRDYA---AAPYLVLATKRG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
             +++ L+DF      G +A+ L   DE++       ++D+LL ++  Q +RF      +
Sbjct: 627 LCKKSALTDFDSNRAGGLVAINLREDDEVIGARLVGADDDLLLVSRNAQSIRFHADDEQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+     D+++S+ ++                                
Sbjct: 687 RPM-GRATAGVIGMRFDADDELLSIEVIKPDSTAS------------------------- 720

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     +L  +  GF KRT   ++ +  R GKG+    + 
Sbjct: 721 --------------------------LLVATSGGFAKRTHLNEYPLQGRGGKGVLTARIV 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                G LV    V  +DQ+  ++  G ++R    ++R A R T GV +       +VV 
Sbjct: 755 P--SRGNLVGALVVEPDDQLYAIASNGGVLRTVARDVRQAQRQTMGVKLIDLETGVQVVG 812

Query: 894 VER 896
           V R
Sbjct: 813 VAR 815


>gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
 gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724]
          Length = 808

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/890 (39%), Positives = 519/890 (58%), Gaps = 86/890 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  +  V +  EM+NSYL YA++VI+GRA+PD RDGLKPV RRI++ M + G+  N+ Y
Sbjct: 3   EKSKVILVGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G V+G+YHPHG+AA+Y+AL RMAQD+S R  LI+G GNFGS+DGD PAA RYT
Sbjct: 63  RKSAHVVGNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  L+ D+ KD VDF PNYD S +EPVVL  + P +L+NG  GIAVGMATNIP
Sbjct: 123 EVRLSPIASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + +I+ P  +++ L+  I+GPDFPTG +I+G  GI+ +Y TG+G + +R
Sbjct: 183 PHNLGELIDALLYLIEKPTAEIEELLNFIKGPDFPTGGIIIGTKGIRESYLTGKGKLTVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+T    + I++ EIPY VNK+ +L +IAELV+EK+I  I DLRDESDR G RVV
Sbjct: 243 GKLVIEETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A   +++NQLY++T LQ+ F V M+A+   +P+ F L  +L  F+  R++VV+R
Sbjct: 303 IELKKDADPKIVINQLYKHTQLQTTFGVIMLAILDGQPKIFNLKELLTIFLEHRKDVVIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA+ RAH+L GL IA+ +LDEV+ IIR + N E A+ +LM R           
Sbjct: 363 RTKYDLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++ Q +AIL++RL +LT L ++ +  E+  +   I     IL
Sbjct: 412 ---------------FKLTQNQAQAILDMRLHQLTRLEKERLMEEMKQIKENISILERIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
                L  +I +EL  +K +    R+T I E    D+  ED +     V+ ++  GY+KR
Sbjct: 457 KDEKELWRVISEELKEIKKKYADERKTSIEEEEKSDITIEDILPDNPEVICITQDGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +PLS Y+ QRRGGKG + +   ++D +T   + ST +++  FS+ G VY  K + L   S
Sbjct: 517 LPLSTYQLQRRGGKGLNTLANNNDDVITSFVVTSTRSTLFLFSNKGKVYSIKTYELDETS 576

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            Q++G A+   L++   ERIT I+   E      NLY  F T  G V++  + +F  + +
Sbjct: 577 RQSKGIAIKEYLNIENEERITEIISLSELP---KNLYFFFITSKGIVKKTPVEEFENVRK 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG  A+K+   D +++V   +  N+I++ T+ G  +RF     R   GR + GV GI L 
Sbjct: 634 SGIYAIKIGEGDFLVNVFLTSGNNEIIIFTRKGNAIRFHEKDTRPM-GRVAQGVIGIKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D VI   I+                                                 
Sbjct: 693 KDDSVIGGVIL------------------------------------------------- 703

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + I+ V++ G GKR +  +F    R G GIRA  ++  ++ G L+ V  V++N
Sbjct: 704 ----QESKQIVLVTKYGIGKRVNPQEFSTQKRGGIGIRAIKIT--SKTGDLIGVKNVSEN 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++ + KG +IR+PVN I I SR ++GV +    +D+ VVS++ +   
Sbjct: 758 DEILISTKKGQIIRIPVNNIPILSRNSQGVKLVKLNEDDSVVSMDLVENE 807


>gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
 gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238]
          Length = 885

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/848 (44%), Positives = 544/848 (64%), Gaps = 17/848 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           KGIT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 12  KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 72  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+GC+A I+N DI +D L+  I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALISGRKGIVDAYKTGRGKVYMRSK 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 252 ANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN L+  T LQ+ F VNMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 312 CKRDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+DE++ +I+ +P+P  A++ L+ R W+  ++ D+++ 
Sbjct: 372 IFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADMLER 431

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L  EI 
Sbjct: 432 AGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEIA 491

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ II+ EL++V+D     RRT I   + D++ ED I +ED+VVT+S  
Sbjct: 492 ELMHILASTERLMEIIRDELITVRDTYGDERRTEIGAAIHDIDIEDLITQEDVVVTLSRE 551

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   L  Y AQRRGGKG+S   M+D D++  L + +TH ++L FS+ G  Y  KV++
Sbjct: 552 GYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFSTRGKAYSLKVFQ 611

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARGK ++NIL L +GERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 612 LPQASRTARGKPIVNILPLEEGERITAILPVSEYS---EDKFIFMATGDGTVKKTSLDQF 668

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++  +G IA+ L   D ++ V+  T  N+I+L +K G+ VRF    +R   GR + GVR
Sbjct: 669 AKVRANGLIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVRFSEEHVRGM-GRTASGVR 727

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L   DQV+S+ IV   + D             +       +     + +    + N 
Sbjct: 728 GMKLTGEDQVVSL-IVPSNEGDILTVTENGYGKRTKISEYPTKSRATQGVVSIKVSDRNG 786

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S     + +  ++F + +++ G   RT   +     R+ +G+     ++      +V + 
Sbjct: 787 SVVGAVQAEDGDEF-MMITDAGTLVRTRVSEVSQVGRNTQGVTLIRTAEDE---NVVGLQ 842

Query: 846 PVNDNDQI 853
            +++ +++
Sbjct: 843 RIDEPEEL 850



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/425 (14%), Positives = 144/425 (33%), Gaps = 38/425 (8%)

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L++ +     +  L   +A+ + ++ IIR     E             ++I   I  ID 
Sbjct: 480 LDEYKALLDEIAELMHILASTERLMEIIRD----ELITVRDTYGDERRTEIGAAIHDIDI 535

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD--DIRNELNSLGIEIKECLDILSSR 494
                  D  + LS       ++ ++       R     ++       +  E L + ++ 
Sbjct: 536 EDLITQEDVVVTLS---REGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTH 592

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------------ 542
             +L    +           P+ +R   G   +        E +   +            
Sbjct: 593 DNILCFSTRGKAYSLKVFQLPQASRTARGKPIVNILPLEEGERITAILPVSEYSEDKFIF 652

Query: 543 --SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VK+  L  +   R  G     V +R++D +  + I +    ++ FS  G V +
Sbjct: 653 MATGDGTVKKTSLDQFAKVRANG--LIAVNLREDDSLIGVDITTGSNEIMLFSKAGKVVR 710

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +      A   + +  + L   +++ +++         N   ++  T++G  +R 
Sbjct: 711 FSEEHVRGMGRTA---SGVRGMKLTGEDQVVSLI------VPSNEGDILTVTENGYGKRT 761

Query: 661 KLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           K+S++   +R+ +  + +   D     +        ++ ++ T  G  VR  +S +    
Sbjct: 762 KISEYPTKSRATQGVVSIKVSDRNGSVVGAVQAEDGDEFMMITDAGTLVRTRVSEV-SQV 820

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN+ GV  I  A+ + V+ +  +   +         ++       +             
Sbjct: 821 GRNTQGVTLIRTAEDENVVGLQRIDEPEELEILEGDVVEGEEEATVITEATETPDAESDE 880

Query: 778 DSSVE 782
           D++ E
Sbjct: 881 DTTEE 885


>gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
 gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica)
           str. Bge]
          Length = 820

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/894 (36%), Positives = 519/894 (58%), Gaps = 84/894 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + +  ++I DEM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM Q+G+  N  
Sbjct: 2   SEGEKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSS 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG+ ++Y+ + R+AQ W+LR  LI+GQGNFGS+D DPPAA RY
Sbjct: 62  YKKSARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+++ +  +L D+ K+TVD + N+D S +EP VL  R PN+L+NG  GIAVGMATNI
Sbjct: 122 TEVRMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           P HNL E ++   A IDN +   ++ +M+ ++ PDFPTG +I G  G+KNA+ TG+G IV
Sbjct: 182 PPHNLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIYGYDGVKNAFHTGKGRIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R   H E+    R+ I+V EIPYQVNK+ M+ +   L++E ++  I  +RDESDR G R
Sbjct: 242 LRAKVHFEEIQ-GRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V  LK+  + +++LN+L++YT LQ+ F+VN +AL   KP +  +  +++ FV  R +V+
Sbjct: 301 IVYILKQNTNPNILLNKLFQYTPLQTSFNVNNIALVNGKPLQLNIKDMIQHFVDHRHDVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+KY L K ++R H+L+G    + +LD ++++I+ S N   A   L+++         
Sbjct: 361 IRRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              +SE Q+++IL++RL  LT L  D ++ E + L  +I+   +
Sbjct: 412 -----------------FKISEDQSKSILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQN 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L   S    IIK+ELL +K +    RRT+I      +  ED I  E +V+T+SH GY+K
Sbjct: 455 VLVQHSVRTKIIKEELLDIKKKYQDSRRTQIDYSGNKVHIEDLIENEQVVLTISHAGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  LS Y+ Q RGG G  G   R+ DF   L I + H  +LFF+  G  +  +V+ +P G
Sbjct: 515 RTSLSEYKRQGRGGVGNRGATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+A+ NI+ L Q +++   +   +  ++    + YV+  T+ G +++  L ++ +
Sbjct: 575 SKISKGRAIQNIIHLQQDDKVNAYILTGDLTNKEYVKDYYVMMVTQKGIIKKTSLENYSR 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             + G  A+ +   D +L       ++ + +  K G+ +RF  + +R   GR S GV GI
Sbjct: 635 PRKDGINAIVIRKGDSLLEAILTKGDSHVFIAVKSGRIIRFSENKVRS-TGRTSSGVIGI 693

Query: 728 SL-AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
               K D VI M  V                                             
Sbjct: 694 HFTNKNDMVIGMICVDG------------------------------------------- 710

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                  K  +  +L VSEKGFGKR++  D+RI+NR GKGI+  ++++  + G L+A+  
Sbjct: 711 -------KKAKGHLLAVSEKGFGKRSNLKDYRITNRGGKGIKTINITQ--KTGYLIAIKH 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V D D ++++   G +IR+ V+ IR+  R T+GV + +  +++ +  V ++ + 
Sbjct: 762 VTDQDDLMIIKKSGIIIRISVSGIRVMGRTTQGVRLINLKENDAIADVAKVYKP 815


>gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
 gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3]
 gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)]
          Length = 894

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849
            R+ +G+     S+     ++V +  +++
Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
 gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80]
 gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52]
 gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2]
 gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395]
 gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9]
 gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286]
 gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236]
 gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10]
 gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27]
 gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1]
          Length = 894

 Score =  822 bits (2122), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849
            R+ +G+     S+     ++V +  +++
Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
 gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM
           17241]
          Length = 857

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/898 (41%), Positives = 540/898 (60%), Gaps = 81/898 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I +V I  EM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ + + G+  +K Y 
Sbjct: 21  EQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKPYR 80

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA   G V+G+YHPHG+A++YDA+ R+AQD+S+R  L++G GNFGSVDGDPPAA RYTE
Sbjct: 81  KCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRYTE 140

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  +L D+ K+TVDF  NYD   QEP VL +R+PN+L NG  GIAVGMATNIP 
Sbjct: 141 SRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNIPP 200

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D    +IDNPD  LD +M+ I+GPDFPTG VI+GR GI+ AYATGR  + +R 
Sbjct: 201 HNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIMGRAGIRAAYATGRARLTLRA 260

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+ +  RE+IVVTEIPY VNKA ++E IA+LV++KRI  I+DLRDESDR G R+VI
Sbjct: 261 RTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMRIVI 320

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A V+LN+LY Y+ LQ    V M+AL G  P+   L  +L  ++ F+ E+V RR
Sbjct: 321 ELKRDANAQVVLNRLYSYSQLQDTVGVIMLALVGGVPKVMPLKDVLTHYIDFQGEIVTRR 380

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L +A++R H+L GL +   N DEV+ IIR S +   ++  L+ R            
Sbjct: 381 TKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIAR------------ 428

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           ++++Q  AI+ ++L +L+GL R  I  EL  +   +KE   IL 
Sbjct: 429 --------------FGITDIQATAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILG 474

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +R++ I+K+EL  ++ +    RRT IV    +++ ED I  ED V+T++H GY+KR P
Sbjct: 475 DYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVDIEDLIPVEDCVITLTHFGYLKRQP 534

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           +  YR QRRGG+G SG+  R+EDFV +LFI STH  ++FF+S G  ++ K + +  GS  
Sbjct: 535 VDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRT 594

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RG  ++N+LS++  E++T ++    DE    +  +V  T+ G ++R  L  +  + R G
Sbjct: 595 SRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLVMVTRKGIIKRTPLGAYKNVRRMG 654

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ LD  DE+  V      +++++ TK G  +RF     R  + R + GV+ I+L  G
Sbjct: 655 LIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIRFDEQDARPLS-RTARGVKAITLEDG 713

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+ MA V                                                   
Sbjct: 714 DEVVGMARVR-------------------------------------------------- 723

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            K     +LTVSE G G+RT    +R+ +R GKGIR   V   ++ G +  V  V+++D 
Sbjct: 724 -KESGATLLTVSESGLGRRTEVSQYRLQSRGGKGIRNYYV---DKNGPVAGVRMVDEDDD 779

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +I+++D G +IR+PV EI + SR   GV     +++ RVV++ R  + E   +    E
Sbjct: 780 VIIITDDGVIIRIPVREITVQSRYGGGVRAMRVSEESRVVTLARAPKEETSGDDGQEE 837



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 62/417 (14%), Positives = 144/417 (34%), Gaps = 27/417 (6%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +  L K  +R      +      +  +V+        + A     +    + ++   I
Sbjct: 454 RIEEELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAKYADERRTEIVAVSGEVD--I 511

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           + +      + +       + Q       +     G+     R E     + I    D +
Sbjct: 512 EDLIPVEDCVITLTHFGYLKRQPVDAYRTQRRGGRGVSGMTRREEDFVEELFICSTHDFI 571

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE----------DCIVREDMVVT 541
              +      + +   + +   T R T IV  L    DE          D   RED  + 
Sbjct: 572 MFFTSKGRCFRLKGYEISEGSRTSRGTNIVNLLSMDSDEKVTALIKVTPDEYEREDRCLV 631

Query: 542 V-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           + +  G +KR PL  Y+  RR G     + + D D +  +      + ++  +  G   +
Sbjct: 632 MVTRKGIIKRTPLGAYKNVRRMG--LIAIGLDDGDELAWVRQTDGTSELIIATKNGMAIR 689

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
              +      P +R    +  ++L  G+ +  +    ++    +   ++  ++ G  RR 
Sbjct: 690 ---FDEQDARPLSRTARGVKAITLEDGDEVVGMARVRKE----SGATLLTVSESGLGRRT 742

Query: 661 KLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++S + ++   G   ++    D+      V    +++D+++ T  G  +R P+  I    
Sbjct: 743 EVSQY-RLQSRGGKGIRNYYVDKNGPVAGVRMVDEDDDVIIITDDGVIIRIPVREI-TVQ 800

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            R   GVR + +++  +V+++A     +   D+     +  +        D      
Sbjct: 801 SRYGGGVRAMRVSEESRVVTLARAPKEETSGDDGQEESQIAAGDEAAGETDKTAEDR 857


>gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146]
 gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146]
          Length = 878

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/850 (44%), Positives = 540/850 (63%), Gaps = 22/850 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++  
Sbjct: 367 IFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLAR 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALAEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ IV H +              +        +     + +    E N 
Sbjct: 723 GIKLAGDDRVVSL-IVPHGEGAILTVTQNGYGKRSSVAEYPTKSRATQGVISIKVTERNG 781

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843
           S     +++  +Q I+ +++ G   RT   +  I  R+ +G+     ++      +V   
Sbjct: 782 SVVGAVQVEDSDQ-IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDE---HVVGLQ 837

Query: 844 --VFPVNDND 851
             V PV+D D
Sbjct: 838 RVVEPVDDED 847



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 144/412 (34%), Gaps = 38/412 (9%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIK 428
           + LL++ +     +  L   + + + ++ +IR            ARR  +  +    +I+
Sbjct: 472 EKLLDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIE 531

Query: 429 DLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--- 483
           DLI+  D            Y  LS+ + +       +       D I   L +   +   
Sbjct: 532 DLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 591

Query: 484 ------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                     + +        G   + ++++       R T I+      E  +      
Sbjct: 592 CFSSRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN------ 645

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL     +  V+ FS+ G 
Sbjct: 646 -VFMATASGTVKKTALAEFSRPRAAGIIAVNLNDGDELIGVDL--TDGNDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +R+ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGDDRVVSLI------VPHGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ ++++   +R+ +  + +        ++        + I++ T  G  VR  +S + 
Sbjct: 754 KRSSVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDSDQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              GRN+ GV  I  A+ + V+ +  V+    D D              ++ 
Sbjct: 813 SIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGSAAEGDDEIVP 864


>gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
 gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80]
          Length = 895

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/869 (43%), Positives = 537/869 (61%), Gaps = 42/869 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849
            R+ +G+     S+     ++V +  +++
Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/444 (15%), Positives = 141/444 (31%), Gaps = 52/444 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEIT 773
                    +        D  E  
Sbjct: 872 PEGEEALVENDAPVAQDDDDGEQE 895


>gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941]
 gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941]
          Length = 823

 Score =  821 bits (2121), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/895 (40%), Positives = 521/895 (58%), Gaps = 89/895 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + + +IT+EM+++YL YA++VI+ RA+PD RDGLKPV  RIL+GM  MG+  N+ + KCA
Sbjct: 6   VRTRNITEEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE++GK HPHG++A+YDAL R+AQ W++R  L+EGQGNFGSVDGDPPAA RYTE RL
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D    +IDNPD  ++ L++I+ GPDFPT  +ILG  GI NAY+TGRG I+IR  +H
Sbjct: 186 SEVCDAITHLIDNPDATVEDLVKILPGPDFPTAGMILGTEGIMNAYSTGRGHIIIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA + E+IAEL R+++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F VNM+AL     +P   TL  +L+ ++  R EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KAR RAH+L GL IA+ +LD V+  IR S + + AR  LM               
Sbjct: 366 EFDLDKARARAHILEGLKIALDHLDAVITTIRNSRSRDNARANLM--------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AILE++L RL  L R  I  E   +   I E  DIL++
Sbjct: 411 -----------NGFALSEAQANAILEMQLGRLAALERQRIEEEYREVIRLIGELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IKQ+L  +K +    RRTRI+     ++ D+D I    +++T++  GYVKR  
Sbjct: 460 PRKILHLIKQDLADLKAKYGDARRTRIIPEANGEVSDDDLIPDVKVLITLTDRGYVKRQS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             VYR QRRGG+G  G   R++D V  +   +T   +LFF+  G VY+ K   LP  S  
Sbjct: 520 PDVYRTQRRGGRGIRGATTREQDVVRHILAANTMDDLLFFTDRGKVYQIKAHELPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N+++L  GE++T+++  P+ E      Y++ AT  G ++R  + ++ Q+  +G
Sbjct: 580 AKGLPLVNLIALEPGEQVTSVLAVPDFE---KAEYLIMATVRGKIKRTSIREYSQVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+  V       D+LLTT  GQ +RF    +R   GR + GV GI+LA+G
Sbjct: 637 LIAIGLEEGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEG 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +     A                                              
Sbjct: 696 DRVVSMDLAQENAA---------------------------------------------- 709

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L V+  G+GKRT   ++ +  R+  G+    +        +     V +N  
Sbjct: 710 -------LLVVTAHGYGKRTDLGEYPLKGRATGGVITIRLRPG---DEVAVAHVVRENSL 759

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + ++++ G ++R   + I +  R T+GV I +   ++RV ++      E  + +E
Sbjct: 760 LTIITESGMVMRTEASGISMFGRNTQGVTIVNLTSNDRVAALCVEAPDENEERSE 814


>gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216]
 gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216]
          Length = 910

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/916 (38%), Positives = 510/916 (55%), Gaps = 104/916 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E            +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSESTTEPPHP-GDRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ Y KCAR+ G+VMG YHPHG+ +IYDAL R+AQDWSLR  L++GQGNFGS 
Sbjct: 60  YDGGYRPDRGYSKCARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECR+   A  ++ D+ ++TVDF PNYDG   EP VL +R+PN+LVNG  
Sbjct: 120 GNDPAAAPRYTECRMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G   ++DNPD   +     L+  I+GPDFPTGA+ILG  G
Sbjct: 180 GIAVGMATNIPPHNLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHRG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E IA LVR+ R+  I
Sbjct: 240 ISDAYRTGRGSITMRAVVEVEEIQ-GRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD++D  S + G R+VI L+R A A V+LN LY++T LQ+ F  NM+AL    P    + 
Sbjct: 299 ADVQDHTSGKTGQRLVIILRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIH 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             LK ++A + +V+VRRT++ L KA +RAH+L  L  A+  LDEV+ +IR SP  E+AR 
Sbjct: 359 AFLKHWIAHQLDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARD 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                          G + + E+Q+RAILE++L RL  L R  I +
Sbjct: 419 GLM--------------------------GLLEIDEIQSRAILEMQLRRLAALERQRITD 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E + L   I +  DIL+   R   I+  EL  + +     R+T+I+    DM  ED I  
Sbjct: 453 EYDELMRMIGDFNDILARPERQRQIVGDELAELVERYGDERKTQILPFEGDMTVEDLIPV 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVTV+  GY KR    +YRAQRRGG+G  G  +R++D V   F  +TH  +LFF++L
Sbjct: 513 EDVVVTVTRGGYAKRTKTDLYRAQRRGGRGVRGASLREDDVVEHFFTTTTHHWLLFFTNL 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G    RG+ + N+L+   GERI  ++   + E      Y+V AT+ G
Sbjct: 573 GRVYRAKGYELPEGGRDGRGQHVANLLAFQPGERIVAVLDIEDYE---QAPYLVLATRGG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS----------RDEILSVETCTQENDILLTTKLGQC 705
            V++ +LS++      G IA+ L S           DE+ +    +++ D+ L ++ G  
Sbjct: 630 IVKKTRLSEYDSNRSGGLIAINLRSHPGADGTEEVDDELFAATLVSEDEDLFLVSRKGMS 689

Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           VRF  +   +R   GR + GV G+     D++++MA+                       
Sbjct: 690 VRFEATDENLRPM-GRATSGVTGMKFRGEDELLAMAVARD-------------------- 728

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            + F+  V+E G+ KRT    +R   R 
Sbjct: 729 ---------------------------------DLFVFVVTELGYAKRTKIEHYRKQGRG 755

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G GI+   +++  E G LV    V+++D++++V   G ++R  V+E+    R T GV   
Sbjct: 756 GLGIKVAKLTE--ERGDLVGALTVSEDDEVLVVMQAGRVVRSRVDEVPDKGRDTMGVTFA 813

Query: 884 STAKDERVVSVERIRE 899
                +R++++ R  E
Sbjct: 814 RPETGDRILAITRNVE 829



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 110/292 (37%), Gaps = 25/292 (8%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD--------EDFVTDLFI 582
           +   +   +V  +  G VK+  LS Y + R GG     +            +D +    +
Sbjct: 614 EDYEQAPYLVLATRGGIVKKTRLSEYDSNRSGGLIAINLRSHPGADGTEEVDDELFAATL 673

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           VS    +   S  G   + +     +  P  R  + +  +     +             +
Sbjct: 674 VSEDEDLFLVSRKGMSVRFEATDENL-RPMGRATSGVTGMKFRGEDE------LLAMAVA 726

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDIL 697
            ++L+V   T+ G  +R K+  + +    G + +K+        D ++   T ++++++L
Sbjct: 727 RDDLFVFVVTELGYAKRTKIEHY-RKQGRGGLGIKVAKLTEERGD-LVGALTVSEDDEVL 784

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +  + G+ VR  +  +    GR+++GV       GD++  +AI  + +   D  +   + 
Sbjct: 785 VVMQAGRVVRSRVDEV-PDKGRDTMGVTFARPETGDRI--LAITRNVERVIDVEVEAEEV 841

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
             A    +     ++    +D +      E       ++E+ I  VS  G G
Sbjct: 842 SEATTSGVDDPIADVAGSGDDLAAAEGADEAPIGGAPVEERGIDPVSGAGDG 893


>gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
 gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC
           6940]
          Length = 856

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/915 (37%), Positives = 522/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     + +    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDQ----NGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNP+   +      ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+ SG+R+ IV+TE+PYQVN   M+  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEE-SGNRQTIVITELPYQVNPDNMISNIAESVANGKIAGI 295

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DES DR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 AKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                     G    + + +VQ  AIL ++L RL  L R  I +
Sbjct: 416 --------------------------GLKTLLAVDDVQADAILAMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +   I +  DIL+   R   I+  EL  + ++    RRT+IV    D+ DED I R
Sbjct: 450 ELAEIEEIIADLKDILAREERQRQIVHDELAEIVEKYGDERRTQIVAASGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     E   +  Y+V ATK G
Sbjct: 570 GRVYRLKAYELPEAGRTARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATKQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++      + +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++SM++V                                
Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLSMSVVHD------------------------------ 715

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+GKRT+  ++    R G G+     +
Sbjct: 716 -----------------------GGYLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V++ D+I  ++  G +IR  VN+IR +SRAT GV + + + D  +++
Sbjct: 753 P--KRGKLIGAIAVDEEDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLSNDVELLA 810

Query: 894 VERIRESEIVDEAES 908
           ++R  E    ++A++
Sbjct: 811 IDRNVEDHGEEDAQA 825


>gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52]
          Length = 827

 Score =  821 bits (2120), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/911 (39%), Positives = 555/911 (60%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEAKMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  + V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHKIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR
Sbjct: 627 NLSEFGSNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GR 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV GI L + D V+   ++                                      
Sbjct: 686 NARGVIGIRLNENDFVVGAVVISDDGNK-------------------------------- 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKGI    +++  + G
Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    
Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAEST 909
           + E  +  E++
Sbjct: 810 KEEEPENLETS 820


>gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
 gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno]
          Length = 837

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/912 (36%), Positives = 524/912 (57%), Gaps = 97/912 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  V I++EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  MGV  N+ Y
Sbjct: 3   EGEKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A I G+V+GKYHPHG+ A+YD + RMAQ+WSLR  L++GQGNFGS+ GDPPAA RYT
Sbjct: 63  KKSAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD +  YD S +EP VL  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+N DI++D L++ I+ PDFPTG +I G  G+K A+ TGRG +++R
Sbjct: 183 PHNLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIYGYEGVKEAFKTGRGRVIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  ++    +E IVVTE+PYQV+ + +L+K ++LV+E ++  I D+RDES R   R+V
Sbjct: 243 AKAEFQEVR-GKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +V+LN L+++T LQ+ FS+N +AL   +PE+  L  ++  FV  R EVV R
Sbjct: 302 YILKRDAVPNVVLNNLFKHTELQTSFSINNIALVKGRPEQLNLKDLIYHFVEHRHEVVYR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAV---ANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           RT Y L KA++R H+L G    +     + + + IIRF   P+                 
Sbjct: 362 RTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKE---------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q  AIL L L R+        + E      EI++  
Sbjct: 406 -------------DLIAEFDLTDIQAEAILALALRRINKALILQTKEEYEQKLAEIRDLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL+ + R   IIK+ELL +K++    RR+ I     +   ED I  + MV+T+SH GY+
Sbjct: 453 DILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGEFSVEDMIPDDKMVITISHAGYI 512

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  LS Y+ Q RGG G+     RD+DF+  LF+ S H  +LFF+  G  +  +V+ +P 
Sbjct: 513 KRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPE 572

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFI 666
           GS  A+G+A+ N++++ Q ++I   +      DE   NN Y++ ATK G V++  L ++ 
Sbjct: 573 GSKTAKGRAVQNLINIEQDDKIKAFVSVQNLKDEEYINNNYLIMATKQGTVKKTLLKEYS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE++  +  +  + ++L  K G+ +RF    +R   GRNS GVRG
Sbjct: 633 RPRQNGINAITIKEGDELIEAKLTSGSSQLMLAVKSGRAIRFGEDKVRAV-GRNSQGVRG 691

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I L  + D+V+ M  + +                                          
Sbjct: 692 IDLDTENDEVVGMIAIENP----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD-------FRISNRSGKGIRATDVSKINEI 838
                     +E+ +L VSE G+GKR+   +       +RI+NR GKG++   +++  + 
Sbjct: 711 ----------REETVLVVSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITE--KT 758

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G LVA+  V + + +++++  G  IR+ ++ +RI+ RAT+GV + +    + + +V ++ 
Sbjct: 759 GQLVAIKSVLEGEDLMIINKSGIAIRLSIDTLRISGRATQGVKLINIKGKDSIAAVTKVM 818

Query: 899 ESEIVDEAESTE 910
           + +  +   + E
Sbjct: 819 KEDDDETDAAEE 830



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 148/421 (35%), Gaps = 40/421 (9%)

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSWNA 424
           + ++ +TK    +       L  +        E+++  ++        ARR  ++ +   
Sbjct: 431 KALILQTKEEYEQKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDARRSTIEYAGGE 490

Query: 425 SDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
             ++D+I  D +  +    G      LSE + ++   +     T   +D + +   S   
Sbjct: 491 FSVEDMIPDDKMVITISHAGYIKRTSLSEYKIQSRGGVGQKASTTRDQDFLEHLFVSSNH 550

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------------E 530
           +    L            + +     K       R       ++ +D            +
Sbjct: 551 Q--YLLFFTQKGKCFWMRVYEIPEGSKTA---KGRAVQNLINIEQDDKIKAFVSVQNLKD 605

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +  + ++  +  G VK+  L  Y   R+ G   + + +++ D + +  + S  + ++
Sbjct: 606 EEYINNNYLIMATKQGTVKKTLLKEYSRPRQNG--INAITIKEGDELIEAKLTSGSSQLM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +    ++      ++G   +  + L+        M   E+        V+ 
Sbjct: 664 LAVKSGRAIRFGEDKVRAVGRNSQG---VRGIDLDTENDEVVGMIAIENPR---EETVLV 717

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ----------ENDILLTT 700
            +++G  +R+ + +        +I  +     + +S+   T             D+++  
Sbjct: 718 VSENGYGKRSYIDEPETHEAVYRITNRGGKGVKTISITEKTGQLVAIKSVLEGEDLMIIN 777

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           K G  +R  I  +R  +GR + GV+ I++   D + ++  V+  D D  +    +   + 
Sbjct: 778 KSGIAIRLSIDTLR-ISGRATQGVKLINIKGKDSIAAVTKVMKEDDDETDAAEEVTPPTE 836

Query: 761 Q 761
           +
Sbjct: 837 E 837


>gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75]
          Length = 828

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/902 (40%), Positives = 550/902 (60%), Gaps = 90/902 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 7   NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 67  YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+I
Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 187 PPHRMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RV
Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++
Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R          
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER---------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   I
Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGI 459

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKR
Sbjct: 460 LRSEDRLNGVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S
Sbjct: 520 VDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A GKA++N++SL   E+I   +   +     +   + F TK+G V+R  LS+F     
Sbjct: 580 RIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFGSNRS 636

Query: 671 SGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV GI 
Sbjct: 637 YSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V+   ++                                               
Sbjct: 696 LNENDFVVGAVVI----------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+
Sbjct: 709 -----SGDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVD 761

Query: 849 DND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V    + E  +  E
Sbjct: 762 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSCPKEEEPENLE 819

Query: 908 ST 909
           ++
Sbjct: 820 TS 821


>gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908]
 gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018]
 gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017]
          Length = 828

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 551/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+  ++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTTIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L + D V+   ++                                     
Sbjct: 686 RTTRGVRGIKLNENDFVVGAVVISDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +T   ++VV V   
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTT--DKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38]
 gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38]
          Length = 827

 Score =  820 bits (2119), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/901 (39%), Positives = 546/901 (60%), Gaps = 89/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 7   NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 67  YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+I
Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 187 PPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RV
Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++
Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIII 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R          
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER---------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLT L RD I+ E  +L   I +   I
Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTCLERDKIKEEYQNLLELIADLNGI 459

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  RL  ++K ELL +K++  +PRRT I E   +++ ED I  E MVV++S+ GYVKR
Sbjct: 460 LKSEDRLNEVVKIELLEIKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S
Sbjct: 520 VDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A GKA++N++SL   E+I   +   +     +   + F TK+G V+R  LS+F     
Sbjct: 580 RIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFGSNRS 636

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV GI L
Sbjct: 637 CGVRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+   ++                                                
Sbjct: 696 NENDFVVGAVVISDDGNK------------------------------------------ 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+D
Sbjct: 714 ----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDD 761

Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    + E  +  E+
Sbjct: 762 ENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCPKEEEPENLET 819

Query: 909 T 909
           +
Sbjct: 820 S 820


>gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
 gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2]
          Length = 822

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/840 (42%), Positives = 519/840 (61%), Gaps = 33/840 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  +E I+V+E+PYQVNKA ++E+IAELVRE++I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   +   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G +  ++DED I  E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P    +   +  Y+VF+TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPIETFD---DERYLVFSTKQGIAKRSSLSSFAHI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+V+SM I+                 +                  + +        
Sbjct: 693 LDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++  ++ ++  G   R S  D   + R  +G++   +S  +E   +  V  V 
Sbjct: 753 VTTVVGNED--LMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVATVAKVT 810



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 22/238 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   +Q  +     + G   RF +S       R +  +  + L      
Sbjct: 385 IALDHLDEVIDLIRRSQTTE---AAREGLMERFSLSE------RQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      IV              K +   R  +S   E     +    V G + + 
Sbjct: 436 EREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L   E  ++T++ KG+ KR     +R   R G+G++    S+ + +  L      +
Sbjct: 496 DDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHL---LITS 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIV 903
            +D ++  ++KG + +    EI    R  KG+ I +     KDE + ++  I   +  
Sbjct: 553 THDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMIPIETFDDE 610


>gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25]
 gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25]
          Length = 906

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/872 (43%), Positives = 539/872 (61%), Gaps = 42/872 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+   E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDEFS---EDKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    EN+I+L +K G+ VRF  +              
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA+ DQV+S+ +  H               +A
Sbjct: 723 DENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTA 781

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                +        +    S          Q ++  E  ++ +++ G   RT   +    
Sbjct: 782 LSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDE--MMMITDAGTLVRTRVGEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R+ +G+     ++     ++V +  + + D 
Sbjct: 840 GRNTQGVTLIRTAEDE---SVVGLQRIEEVDD 868



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 71/447 (15%), Positives = 153/447 (34%), Gaps = 36/447 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R     +            A
Sbjct: 469 EHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVR-----DGFGDARRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     +++E +   + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSHGGYV-KYQVLSDYESQRRGGKGKSATKMKDEDHIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   E E        D    +
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSED 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL+ +   R  G     V +R++D +  + I +    ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLREDDSLIGVDITNGENEIMLFSKAG 700

Query: 597 FVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDE 640
            V + K                   G P+ + K    +    S  +G ++          
Sbjct: 701 KVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI 760

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDIL 697
              +   ++  T++G  +R  LS++    R  +  + +   +     +      + ++++
Sbjct: 761 VPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMM 820

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  VR  +  +    GRN+ GV  I  A+ + V+ +  +   D +        + 
Sbjct: 821 MITDAGTLVRTRVGEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVDDEELPAGEEAEA 879

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +       DT E  +  +       
Sbjct: 880 LESTDENTQQDTPEAPAADDAEEGNEE 906


>gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
 gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01]
          Length = 906

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/872 (43%), Positives = 539/872 (61%), Gaps = 42/872 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+   E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDEFS---EDKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    EN+I+L +K G+ VRF  +              
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLFSKAGKVVRFKEAEEIPVLDENGKPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA+ DQV+S+ +  H               +A
Sbjct: 723 DENGQPEIKFKGVRPM-GRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTA 781

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                +        +    S          Q ++  E  ++ +++ G   RT   +    
Sbjct: 782 LSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDE--MMMITDAGTLVRTRVGEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R+ +G+     ++     ++V +  + + D 
Sbjct: 840 GRNTQGVTLIRTAEDE---SVVGLQRIEEVDD 868



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 70/447 (15%), Positives = 152/447 (34%), Gaps = 36/447 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R     +            A
Sbjct: 469 EHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVR-----DGFGDARRTEITAA 523

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           S   D+ +LI      +      Y+ + Q  +  E +     G     +++E +   + +
Sbjct: 524 SHDIDMEELIAREDVVVTLSHGGYV-KYQVLSDYESQRRGGKGKSATKMKDEDHIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
               D +   S      + ++  +     T R   IV  L   E E        D    +
Sbjct: 583 ANTHDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSED 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL+ +   R  G     V +R++D +  + I +    ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTPLNQFANVRSNG--LIAVNLREDDSLIGVDITNGENEIMLFSKAG 700

Query: 597 FVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITTIMPFPEDE 640
            V + K                   G P+ + K    +    S  +G ++          
Sbjct: 701 KVVRFKEAEEIPVLDENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLI 760

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDIL 697
              +   ++  T++G  +R  LS++    R  +  + +   +     +      + ++++
Sbjct: 761 VPSHEGDILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMM 820

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  VR  +  +    GRN+ GV  I  A+ + V+ +  +   D +        + 
Sbjct: 821 MITDAGTLVRTRVGEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVDDEELPADEDAEA 879

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +       D  E  +  +       
Sbjct: 880 LESTGENTQQDASEAPAADDAEEGNEE 906


>gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori]
          Length = 826

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/901 (40%), Positives = 549/901 (60%), Gaps = 89/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 7   NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 67  YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+I
Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 187 PPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RV
Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ F+  R+ +++
Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIII 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R          
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER---------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   I
Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGI 459

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  RL G++K ELL VK++  +PRRT I E    ++ ED I  E MVV++S+ GYVKR
Sbjct: 460 LKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVVSMSYKGYVKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S
Sbjct: 520 VDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A GKA++N++SL   E+I   +   +     N   + F TK+G V+R  LS+F     
Sbjct: 580 RIAMGKAIVNLISLAPDEKIMATLSTKDFS---NERSLAFFTKNGVVKRTNLSEFGSNRS 636

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GRN+ GV GI L
Sbjct: 637 CGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREM-GRNARGVIGIRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+   ++                                                
Sbjct: 696 NENDFVVGAVVISDDGNK------------------------------------------ 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+D
Sbjct: 714 ----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDD 761

Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    + E  +  E+
Sbjct: 762 ENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCPKEEEPENLEN 819

Query: 909 T 909
           +
Sbjct: 820 S 820


>gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70]
 gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70]
          Length = 825

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/840 (43%), Positives = 527/840 (62%), Gaps = 34/840 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ENQNPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A I GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSAHIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEVVD  +A+  NPD+ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+V E+PYQVNKA ++E+IAELVREK+I  I DLRDESDR G R
Sbjct: 243 LRAKVEIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A++ VILN LY++T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANSKVILNNLYKHTALQTNFGINMLALVDGQPKVLNLKECLQHYLDHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM++         
Sbjct: 363 RRRTAYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   L   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDLIRLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II+ EL  +K+  +  RRT IV  G+ + +DED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLQIIRDELTEIKERFNDERRTEIVIGGIEEFDDEDLIPRENIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG  +IN+L L++ E I TI+P   +    +NLY+ F TK G  +R+ LS F  I
Sbjct: 577 FGRTARGIPIINLLELDKDEWINTIIPINNE--FDDNLYLFFTTKQGIAKRSPLSSFAHI 634

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+       I++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 635 RNNGLIAIHLREGDELISVKLTDGSKHIIVGTKNGMLIRFPETDVRTM-GRSATGVKAIT 693

Query: 729 LAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  GD+V+ M I+    D     +  Y K   A    I     +     N +   G++  
Sbjct: 694 LEDGDEVVGMEILEDDCDVLVVTKNGYGKRTPASEYRIQSRGGKGLKTCNITEKNGSVVA 753

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +       E+ ++ ++  G   R +  D     R+ +G++   +S  +E   +  V  V
Sbjct: 754 VKTV---TGEEDLMLITAGGILIRIAVSDISRMGRNTQGVKLIRLSDDDEHEYVATVAKV 810


>gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
 gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3]
          Length = 860

 Score =  820 bits (2118), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/915 (38%), Positives = 529/915 (57%), Gaps = 97/915 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    I  V I DEM+ SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+ M + G  +N 
Sbjct: 2   EDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCAR  G++MGKYHPHG++++Y+ L R+AQ W++R  L++GQGNFGS+DGD PAA R
Sbjct: 62  PTRKCARAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+  +TVDF+ N+DG F+EP VL  R PN+L+NG  GIAVGMATN
Sbjct: 122 YTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +  HNL E ++ C+A ID   +I +D LM+ ++ PDFPTG VI G  G+K A+ TGRG I
Sbjct: 182 MAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGRI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIRG + IE+     E+I++ EIPYQV K+ M+ KIA+LV EK+I  I+D+ DES  +G 
Sbjct: 242 VIRGKADIEEYHS-HERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI++K+ A+A V+LN LY+Y+ L+S FSVN +AL   +P +  L  ++  FV  R +V
Sbjct: 301 RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVNGRPRQLNLKDLIGHFVDHRHDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR +Y L KA++R H+L GL IAV ++DEV+RIIR S     A   LM+         
Sbjct: 361 VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLME--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q RAI+++RL +LT L  D +++E N L   I    
Sbjct: 412 -----------------AFNLSELQARAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLN 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
             LS  +  + +I++E   + ++    RR+ IV    D+  ED    EDMV+T+SHLGY+
Sbjct: 455 LFLSDINMRMELIQEECREIIEKYGDERRSEIVYASEDLNPEDFYADEDMVITISHLGYI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PLS +R Q RGG G  G   RDEDFV  ++  + H +++ F++ G VY  +V+ +P 
Sbjct: 515 KRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPE 574

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPE---DESSWNNLYVVFATKHGNVRRNKLSDF 665
           GS  ++G+ + N+L L++  RIT  +       D    N  Y+VFAT+ G +++  L+ +
Sbjct: 575 GSKSSKGRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHY 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++G  A+ L   D+++SV       +I L  + G+CVRF    +R   GR + GVR
Sbjct: 635 ANPRKTGVRAINLRDDDQVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPM-GRTATGVR 693

Query: 726 GISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           GI L     D+V+ M +    ++D    +   K                           
Sbjct: 694 GIRLDNDPNDKVVGMVVHRLKNSDETILVISEK--------------------------- 726

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                                  G+GKR+   D+RI+ R  KG++  +V+  ++ G L+ 
Sbjct: 727 -----------------------GYGKRSRIDDYRITKRGAKGVKTINVT--DKTGQLID 761

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSV-------- 894
           +  V D+D I++++  G  IR+ + ++R+  RAT+GV +    K  + + S+        
Sbjct: 762 IRAVEDDDNIMIINKSGVAIRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVVAEEE 821

Query: 895 --ERIRESEIVDEAE 907
             E + E+++ D +E
Sbjct: 822 EPELVDEADLDDPSE 836



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/431 (13%), Positives = 147/431 (34%), Gaps = 25/431 (5%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + ++  N+ ++R   L      +    E+++        +       +  + + D+    
Sbjct: 438 KLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIEKYGDERRSEIVYASEDLNPED 497

Query: 432 DLIDDSSYTIGSDGTMY----LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-- 485
              D+      S         LSE +T+    + +        D +    ++        
Sbjct: 498 FYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDEDFVEYIYSATMHATMML 557

Query: 486 -------ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
                    L +            + + ++ D  +  R T  +       D D +    +
Sbjct: 558 FTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRITAFLRIKNLTTDADFVNTHYL 617

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V   +  G +K+  L+ Y   R+ G     + +RD+D V  + + + +  +   +  G  
Sbjct: 618 VFA-TEQGLIKKTLLAHYANPRKTG--VRAINLRDDDQVVSVALSNGNCEIFLANRNGRC 674

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            +     +      A G   I  L  +  +++  ++         ++  ++  ++ G  +
Sbjct: 675 VRFNEQEVRPMGRTATGVRGI-RLDNDPNDKVVGMV---VHRLKNSDETILVISEKGYGK 730

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R+++ D+    R  K    ++  D+    + +     +++I++  K G  +R  +  +RV
Sbjct: 731 RSRIDDYRITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVAIRLSMEQVRV 790

Query: 716 FAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             GR + GV+ I L K  D++ S+  V+  + + +          ++      D  +   
Sbjct: 791 M-GRATQGVKMIDLNKRSDEIASICNVVAEEEEPELVDEADLDDPSEFVPQEEDLNDFDD 849

Query: 775 LKNDSSVEGNI 785
                      
Sbjct: 850 SPAQDEESSED 860


>gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
 gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           genitalium ATCC 33030]
          Length = 879

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/913 (37%), Positives = 511/913 (55%), Gaps = 95/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +S D      I  + I +EMQ SY+ YA++VI+GRA+PD+RDG+KPVHRRI++ M
Sbjct: 1   MSDDTLSGDTY--DRIFPIDINEEMQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W +R  L++GQGNFGS 
Sbjct: 59  YDSGYRPERSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC++   A  ++ D+ ++ VDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECKMTPLAMEMVRDIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +    ++DN D      LDA ME ++GPDFPT  +I+G +G
Sbjct: 179 GIAVGMATNIPPHNLGELAEAIYWILDNHDADEKTTLDACMERVKGPDFPTAGMIVGDSG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+    R+ IV+TE+PY VN    +  IAE V   ++  I
Sbjct: 239 IKDAYTTGRGSIRMRGVTEIEEVGT-RQVIVITELPYNVNPDNFISGIAEQVAAGKMTGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ L++ FS NM++L    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSPLETNFSANMLSLVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + EVQ  AIL ++L RL  L R  I +
Sbjct: 418 GLMS--------------------------LLDVDEVQADAILAMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L ++  EI +  DIL+   R   I+  EL  V D+    RRT++V    D+ +ED I R
Sbjct: 452 DLAAIEAEIADYKDILAKPERQRAIVADELREVVDKHGDERRTKLVAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQDDVVKNFFVCSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++         +  Y+V AT+ G
Sbjct: 572 GRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVIQIQTY---QDAPYLVLATRDG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++       ++DILL ++ GQ +RF      +
Sbjct: 629 RVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDDDILLVSEQGQSIRFTADDEQL 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ+++M  V                                
Sbjct: 689 RPM-GRATAGVKGMRFRGDDQLLAMTTVSDG----------------------------- 718

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                   Q++L  +  G+GKRT   ++    R G G+     +
Sbjct: 719 ------------------------QYLLVATSGGYGKRTPIAEYNPQGRGGMGVMTFKYT 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    V ++DQI  ++  G +IR  VN+IR +SRAT GV +     D  +++
Sbjct: 755 P--KRGKLIGALAVEEDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLGDDVELLA 812

Query: 894 VERIRESEIVDEA 906
           ++   E E   EA
Sbjct: 813 IDVNVEDEGEQEA 825



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 94/271 (34%), Gaps = 13/271 (4%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     +   D      L        +L
Sbjct: 613 QTYQDAPYLVLATRDGRVKKSRLTDYESARSAGLIAINLNEGDTLIGASLVG--DDDDIL 670

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  A +  +     +++  +          +  Y++ 
Sbjct: 671 LVSEQGQSIRFTADDEQL-RPMGRATAGVKGMRFRGDDQLLAMTTVS------DGQYLLV 723

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  ++++    R G   M       R +++      +++ I   T  G  +R
Sbjct: 724 ATSGGYGKRTPIAEYNPQGRGGMGVMTFKYTPKRGKLIGALAVEEDDQIFAITSAGGVIR 783

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ IR  + R ++GVR + L    +++++ + +  + + +         + +    + 
Sbjct: 784 TEVNQIRP-SSRATMGVRLVDLGDDVELLAIDVNVEDEGEQEATAVAKGEKTLEEVSDTV 842

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +   T +   +    ++  +   E    E 
Sbjct: 843 SSAASTEVSGTAVNVNSVETDEVGESHDYED 873


>gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
 gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926]
          Length = 819

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/889 (40%), Positives = 537/889 (60%), Gaps = 86/889 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I +EM+ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y+ + RMAQD++ R  LI+G GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K    LL D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE++DG +A+I+N +I  + LME + GPDFPTG +I G  GI  AY TGRG + +RG 
Sbjct: 182 NLGELLDGVLALIENKEITPEELMEYVTGPDFPTGGIIDGTKGIYEAYTTGRGRVRVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVI 312
             IE+    +  I++TEIP+QVNKA ++EKIAELV+EK+I  I DLRDES  R+G R+V+
Sbjct: 242 VDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVV 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR    +++LN++Y+YT LQ+ F + ++AL    P+   L  IL  ++  R +V+ RR
Sbjct: 302 ELKRDEEPEIVLNKIYKYTELQNTFGIILLALVDNMPKVLNLKEILSHYINHRFDVITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY L K+ +RAH+L G  +A+ N+D ++ IIR S +  TAR  L+++            
Sbjct: 362 TKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S++Q R+IL+++L RLTGL R+ + NE  +L   IKE  DILS
Sbjct: 410 --------------YSFSDIQARSILDMKLQRLTGLEREKVENEYTALMEHIKELKDILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +  R+  IIK++   +K++    RRT+I E  LD+  ED I  E ++VT+++ GYVKR+ 
Sbjct: 456 NDQRVYDIIKEDCEELKEKYSDERRTQIEEERLDINIEDLIKDEKVIVTLTNKGYVKRMN 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y+AQ+RGGKG S     + DF+ +++  S   +++ F+  G VY  KV+ +P  S Q
Sbjct: 516 LDKYKAQKRGGKGVSTQNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQ 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           +RGK + N+++L + E++ +I+   E     +   ++F TK G V++  LS+F  +NRSG
Sbjct: 576 SRGKLIANLINLQENEKVKSIIKTREFS---DTQDLLFVTKEGLVKKTVLSEFKNLNRSG 632

Query: 673 KIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+KL   D+++ V       + + + TK G  ++FP    R   GR ++GVRGI+L K
Sbjct: 633 LRAIKLKDGDDLIFVGLVESPNDQVFIATKNGYSIKFPHENARNM-GRATIGVRGINLRK 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+S  I+   D                                              
Sbjct: 692 DDDVVSAVIIKRDDTT-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ILTV+E G+GKRT   ++ + +RSGKG+     ++  + G +V V  V + +
Sbjct: 708 --------ILTVTENGYGKRTREDEYPLQSRSGKGVINLRCNE--KTGVVVEVTSVTEEE 757

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ ++  G +IR P + I +  RAT+GV I    +DE++VS+ ++ ++
Sbjct: 758 ELMAITSNGIVIRTPADTISLIGRATQGVRIMRVEEDEKLVSIVKVMKN 806


>gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7]
          Length = 830

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/910 (40%), Positives = 553/910 (60%), Gaps = 93/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  NELGLTSKVAYKKSARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+ +LD ++E I GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT   +E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTKH-KEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+E   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIEELNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+   F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYERQNRGGKGKLSGSTYEDDFIESFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  +  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEANRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   GR
Sbjct: 627 NLSEFGSNRSCGIRAIVLDEDDELVSAKIVDKNAKHLLIASHSGTFIKFPLENVREM-GR 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRGI L + D V+S  ++                                      
Sbjct: 686 STHGVRGIKLNENDFVVSAVVISDDSNK-------------------------------- 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R   R GKG+    ++K  + G
Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYREQARGGKGVIGMKLNK--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV+V  V+D +  +++++    +IRV + +IR   R   GV +  TA  ++VV V    
Sbjct: 752 NLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLIDTA--DKVVYVNSCP 809

Query: 899 ESEIVDEAES 908
           + E  +  E+
Sbjct: 810 KEEEPENLET 819


>gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129]
 gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae]
          Length = 856

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/903 (38%), Positives = 524/903 (58%), Gaps = 95/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ ++  D      +  + + +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDLLGGDGY--DRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ YVK AR   + MG++HPHG++AIYD L R+AQDW++R  +++GQGNFGS 
Sbjct: 59  YDSGYRPDRSYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECRL   A  ++ D+ ++TVDF PNYDG  QEP VL +R PN+L+NG  
Sbjct: 119 GNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSN 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    ++DNP+ D    L+A M+ ++GPDFPT   I+G  G
Sbjct: 179 GIAVGMATNIPPHNLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGSQG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRGSI +RGV+ IE+  G+R+ IV+TE+PYQVN   M+  IAE VR+ ++  I
Sbjct: 239 INDAYTTGRGSIRMRGVTSIEE-EGNRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGI 297

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 298 SKIEDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 358 QMLRHYVTHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIART 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q  AIL ++L RL  L R  I +
Sbjct: 418 GLME--------------------------LLTVDEIQADAILAMQLRRLAALERQKIVD 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I++ EL  + D+    RRT+I+    D+ +ED I R
Sbjct: 452 ELAEIELEIADYKDILARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIAR 511

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVSSTHDWILFFTNF 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     ERI  ++     E   +  Y+V AT  G
Sbjct: 572 GRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYE---DAPYLVLATAQG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++LSD+      G IA+ L+  D+++    C  ++D+LL ++ GQ +RF  +   +
Sbjct: 629 RVKKSRLSDYESNRSGGLIAINLNEGDKLIGAALCDNDDDLLLVSEEGQSIRFNANDDQL 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ+++M +V                                
Sbjct: 689 RPM-GRATAGVKGMRFKGDDQLLAMTVVKP------------------------------ 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                  + F+L  +  G+GKRTS  ++    R G+G+     +
Sbjct: 718 -----------------------DAFLLVATSGGYGKRTSLDEYSPQGRGGQGVLTFKYT 754

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+A   V+++D+I+ ++  G +IR  VN+IR +SRAT GV + +      +++
Sbjct: 755 P--KRGKLIAAVVVDEDDEILAITSAGGVIRTVVNQIRPSSRATMGVRLVNLEDGVELLA 812

Query: 894 VER 896
           ++R
Sbjct: 813 IDR 815



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 21/230 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKGDQVI 736
           DE++++   +   DI    + G      +  I+         R     R  +L +   V 
Sbjct: 400 DEVIALIRRSPTVDI---ARTGLMELLTVDEIQADAILAMQLR-----RLAALERQKIVD 451

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +A +    ADY + +   +   A  R    +  +       + +     +   ++L  +
Sbjct: 452 ELAEIELEIADYKDILARPERQRAIVRDELAEIVDKYGDDRRTQIIAATGDVTEEDLIAR 511

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIIL 855
           E  ++T++  G+ KRT    ++   R GKG+R  ++    +   +V  F V+   D I+ 
Sbjct: 512 ENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVSSTHDWILF 567

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902
            ++ G + R+   E+  ASR  +G  + +  +   +ER+  V +I+  E 
Sbjct: 568 FTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYED 617


>gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286]
 gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286]
          Length = 819

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/906 (39%), Positives = 510/906 (56%), Gaps = 88/906 (9%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+      D+ +    +  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ 
Sbjct: 1   MSSEAPDPDDPQAASRVDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MGV     + K + I GE MG YHPHG++AIYD L RMAQ +S+R  L++GQGNFGS
Sbjct: 61  MHEMGVSSRSAHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGDP AA RYTE R+   +  LL D+ KDTVDF+ NYD   +EP VL +  PN+LVNG 
Sbjct: 121 MDGDPAAAMRYTEARMSPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM+TNIP HNLGEV+D  V +IDNPD +++ LM+ ++GPDFPTG  I+G+  I +
Sbjct: 181 SGIAVGMSTNIPPHNLGEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIVGKDAIYS 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG + +R      +   +  +IVVTEIPYQ NKA M+E+IAE V E  I  IADL
Sbjct: 241 AYATGRGRLRVRADY---EVDPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADL 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+V+ELKRGA+ DV+ NQL   + L+S F V  +AL   +P   TL   L+
Sbjct: 298 RDESDRNGVRIVVELKRGANVDVVENQLLE-SHLESTFGVINLALVDDEPRVLTLKETLE 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +VA R+EVV RR+++ L++A+DRAH+L G   A+ N+D+VV +I+ S + + AR EL  
Sbjct: 357 HYVAHRKEVVRRRSQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRS 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                             SE Q   I+ ++L  LT +   +I +E   
Sbjct: 417 Q--------------------------FDFSEEQAAHIVRMQLGSLTSMETAEIESEYED 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +   I+    IL S   LL +IK EL  +K E D  R+T I+E   ++  ED I  ED V
Sbjct: 451 VQARIERLQTILDSEDELLTVIKDELREIKAEYDDDRKTSILEAEGEVTHEDLIPEEDCV 510

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V ++   Y+KR+P+  + AQ RGGKG  G   +D D V+ +F  ++H  +L F++ G VY
Sbjct: 511 VVITEDDYIKRMPVDAFDAQNRGGKGIIGSDPKDGDRVSKVFRANSHDYLLCFTNQGQVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  ARGK+ +NI+ L   E IT ++   + E    +  +   T++G V+R
Sbjct: 571 RLKTYEIPEMSRTARGKSAVNIIDLGDDEEITAVVSTDDFE---EDECLTMVTRNGYVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + +F  I  +G IA KL+  D ++ VE      D+++ T+ G  +RF  S +R   GR
Sbjct: 628 TCVDEFENILSTGIIAAKLEDGDALVDVEVTDDSGDLVVATEGGMTIRFDESEVREM-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GVRGI L  GD+V +M      D                                  
Sbjct: 687 SARGVRGIDLQDGDKVAAMVATDDHDDRA------------------------------- 715

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +LTV+E G+GKRT   ++   +R GKG+        N  G
Sbjct: 716 --------------------LLTVTENGYGKRTLLAEYSKQSRYGKGLIDIKTDDRN--G 753

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +     V ++D ++++S+ G ++R+P  ++    R TKGV I +    + V SV  +  
Sbjct: 754 RVATAKAVREDDHLVIMSESGQIMRIPAGDVSQVGRNTKGVKIMALDGVDNVASVTVVPA 813

Query: 900 SEIVDE 905
               DE
Sbjct: 814 EVENDE 819


>gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 816

 Score =  820 bits (2117), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/892 (37%), Positives = 503/892 (56%), Gaps = 87/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + +E+++SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ + K
Sbjct: 12  QKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKK 71

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE MGKYHPHG+AAIY+ + RM+QD+S+R  L++GQGNFGS+DGDPPAA RYTE 
Sbjct: 72  SARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEA 131

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL      +L D+ +DTVD+ PN+D S +EP VL +R PN+LVNG  GIAVGMATN+P H
Sbjct: 132 RLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD C  ++DNPD+++  LM  + GPDFPTG VI+GR GI +AY TGRG IV+RG 
Sbjct: 192 NLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIMGRDGIIDAYTTGRGKIVVRGC 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     ++ IV+T+IPY VNK+ ++E I + V+  ++  I D+RDES+R+G R+V+E
Sbjct: 252 AEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGIRLVLE 311

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L R +   ++L QLY  T LQ+ F V  +AL   +P    L G+L+ F+  R  VV RRT
Sbjct: 312 LHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGRPVELNLKGLLQIFIDHRRMVVRRRT 371

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAH+L GL  A+  +D V+ +IR S +P  A+  L++              
Sbjct: 372 QYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEE------------- 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                        +  +E Q +AIL++RL RLT L +  ++ EL  L  +I     IL  
Sbjct: 419 -------------LGFTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGD 465

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + L  ++++ELL VK      RRT I + + D+  ED I   ++VV ++  G+++R+PL
Sbjct: 466 PAELDSVVREELLEVKRAYGDERRTVIEDSVDDVSYEDLIPETEVVVAMTRDGFIRRMPL 525

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YR Q RGGKG  G  ++ ED V+ + + +TH S+  F+  G V+  K   +P      
Sbjct: 526 QDYRCQARGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPE-PKSG 584

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           RGK +   +SL++GE     +    D +     +V   TK G  +R  + +   I R+G+
Sbjct: 585 RGKHVSTFISLDEGE----SVVTFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGR 640

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + L+  D I  V     E+ +LLTT  GQ +R   +  R   GR + GVRGI L   D
Sbjct: 641 RILGLEEDDTIARVRFTGGEDQLLLTTAKGQTLRVSETEFRP-QGRAAKGVRGIKLDPDD 699

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+   +++                                                   
Sbjct: 700 LVVGCDVIMPG------------------------------------------------- 710

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
               + +L +S+ G GKRT   +F + +R G G+RA  + +    G LV  + V D+D+I
Sbjct: 711 ----RQVLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGER--TGHLVGAWGVADDDEI 764

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           ++++ +G ++R    ++   SR+  G+ +    + ++V  V  IR S    E
Sbjct: 765 MVITSRGRVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVIRCSMEEGE 816


>gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
 gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16]
          Length = 822

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/840 (42%), Positives = 518/840 (61%), Gaps = 33/840 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+  I  V+I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  LL D+ KDT+D++ NYDGS +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+D  +A+  NP++ +  LME I GPDFPT   I+GR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  +  I+V+E+PYQVNKA ++E+IAELVRE++I  I DLRDESDR G R
Sbjct: 243 LRAKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A V+LN LY+YT+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKTVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 363 RRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMER--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E   +   I E   
Sbjct: 414 -----------------FSLSERQAQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L II+ EL  +K+  +  RRT IV G +  ++DED I  E +V+T++H GY+
Sbjct: 457 VLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+Q+RGG+G  G+   ++DFV  L I STH +VLFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L L++ E I  ++P    +   +  Y+VF+TK G  +R+ LS F  I
Sbjct: 577 FGRTAKGLPIINLLELDKDEWINAMIPIETFD---DERYLVFSTKQGIAKRSSLSSFAHI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV     +  +++ TK G  +RFP + +R   GR++ GV+ I+
Sbjct: 634 RNNGLIAIHLREGDELISVRLTDGQKHLIIGTKNGMLIRFPETDVRTM-GRSATGVKAIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+V+SM I+                 +                  + +        
Sbjct: 693 LDDNDEVVSMEILEDHHDVLVVTKKGFGKRTPASEYRVQSRGGKGLKTCNVTERNGSVVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++  ++ ++  G   R S  D   + R  +G++   +S  +E   +  V  V 
Sbjct: 753 VTTVVGNED--LMVITTSGVLIRISVSDISRTGRVAQGVKLIRLSGEDEHECVATVAKVT 810



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 22/238 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   +Q  +     + G   RF +S       R +  +  + L      
Sbjct: 385 IALDHLDEVIDLIRRSQTTE---AAREGLMERFSLSE------RQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      IV              K +   R  +S   E     +    V G + + 
Sbjct: 436 EREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDERRTEIVVGAVEQL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L   E  ++T++ KG+ KR     +R   R G+G++    S+ + +  L      +
Sbjct: 496 DDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTSEDDFVEHL---LITS 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEIV 903
            +D ++  ++KG + +    EI    R  KG+ I +     KDE + ++  I   +  
Sbjct: 553 THDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINAMIPIETFDDE 610


>gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 911

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/894 (37%), Positives = 494/894 (55%), Gaps = 78/894 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  +  V +T E+QNS+L YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ 
Sbjct: 33  PAKGRVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTMYDGGYRPDRG 92

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L+ GQGNFGS   D  AA RY
Sbjct: 93  WNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSPGNDGAAAMRY 152

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TECR+   A  ++ D+ + TVDF+PNYD    EP VL AR+PN+LVNG  GIAVGMATNI
Sbjct: 153 TECRMAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGSTGIAVGMATNI 212

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HNL EV +     +++P+   + L    M  ++GPDFP GA+I+GR GI++AY TGRG
Sbjct: 213 PPHNLREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIVGRKGIEDAYRTGRG 272

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           S+ +R V +IE+    R ++VVTE+PY  N   + +KIA+LV   R+  I+D+RD+S  R
Sbjct: 273 SVTMRAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTGISDIRDDSSAR 332

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+ I LKR A   V++N LY++T LQ  F  NM+AL    P    L   ++ +V  +
Sbjct: 333 TGQRLAIMLKRDAQPRVVMNNLYKHTQLQDTFGCNMLALVDNVPRTLRLDQFIRYWVLHQ 392

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+VRRT++ L +A   AH+  GL  A+  LDEV+ +IR SP  E A   L +      
Sbjct: 393 IEVIVRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQASAGLQK------ 446

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + +VQ  AIL ++L RL  L R  I +++  L   I 
Sbjct: 447 --------------------LLDIDDVQAAAILNMQLRRLAALERQKIIDKMKELDTLIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL++R R   I+  EL  +  +    RRT+I+    D  DED I  +DMVVT++  
Sbjct: 487 DLKDILANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDDDMVVTITRG 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR     YR QRRGGKG  G  +R +D V  LF  + H  +LFF+  G VY+ K W+
Sbjct: 547 GYAKRTRTDQYRPQRRGGKGVRGATLRADDEVQHLFATTNHQWILFFTDHGRVYRIKTWQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G   A+G  +  +LS    E+I  ++     E   +  Y+V ATK G V++  LS +
Sbjct: 607 LPEGGRDAKGGHVAGLLSFLPDEKIAQVLALRSYE---DAEYLVLATKQGLVKKTALSAY 663

Query: 666 IQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722
               ++G IA+      DE++  E     +D+LL ++LGQ +RF      +R   GR + 
Sbjct: 664 DSPRQAGLIAVNFRADDDELIGAELVDASDDVLLISRLGQAIRFRADDEQMRPM-GRTTS 722

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   +GD+++SM++V                                        E
Sbjct: 723 GVTGMRFREGDELLSMSVVP--------------------------------------AE 744

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              + +   + + +  ++ TV+  GF KRT   D+R+ NR G GI+A  +   +E G LV
Sbjct: 745 RGEASDEHADEEDEPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMD--DERGHLV 802

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               V D+D++I +   G + R  V E+    R T GV        + V+++  
Sbjct: 803 GGLVVTDSDEVIAIKASGQVTRSSVAEVNPTGRDTMGVKFVGVRGKDEVIAIAL 856



 Score = 82.9 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 6/170 (3%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M  +    AD  + +   +   +      G+       +  + +     +   ++    +
Sbjct: 478 MKELDTLIADLKDILANRERQRSIVSNELGEIVGKYGDERRTQIIAAEGDFSDEDFIPDD 537

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ++T++  G+ KRT +  +R   R GKG+R   +   +E+  L A     ++  I+  +
Sbjct: 538 DMVVTITRGGYAKRTRTDQYRPQRRGGKGVRGATLRADDEVQHLFAT---TNHQWILFFT 594

Query: 858 DKGTLIRVPVNEIRIASRATKG--VV-IFSTAKDERVVSVERIRESEIVD 904
           D G + R+   ++    R  KG  V  + S   DE++  V  +R  E  +
Sbjct: 595 DHGRVYRIKTWQLPEGGRDAKGGHVAGLLSFLPDEKIAQVLALRSYEDAE 644



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 98/260 (37%), Gaps = 15/260 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + +V  +  G VK+  LS Y + R+ G         D++ +     V     VL  
Sbjct: 640 YEDAEYLVLATKQGLVKKTALSAYDSPRQAGLIAVNFRADDDELIGAEL-VDASDDVLLI 698

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645
           S LG   + +        P  R  + +  +   +G+ + ++   P +    ++       
Sbjct: 699 SRLGQAIRFRADDE-QMRPMGRTTSGVTGMRFREGDELLSMSVVPAERGEASDEHADEED 757

Query: 646 --LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTT 700
             LYV   T  G  +R  + D+   NR G     +   DE    +     T  ++++   
Sbjct: 758 EPLYVFTVTNGGFAKRTPVGDYRVQNRGGLGIKAMRMDDERGHLVGGLVVTDSDEVIAIK 817

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GQ  R  ++ +    GR+++GV+ + +   D+VI++A+      +  E        + 
Sbjct: 818 ASGQVTRSSVAEVNP-TGRDTMGVKFVGVRGKDEVIAIALNPEKPEEEGEGDETEPEATD 876

Query: 761 QRRLISGDTEEITSLKNDSS 780
           +       T+ I +  ++  
Sbjct: 877 EMGNAVPATDVIEADASEDG 896


>gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
 gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809]
          Length = 828

 Score =  819 bits (2116), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/900 (41%), Positives = 536/900 (59%), Gaps = 87/900 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +      +SI + ++NSYL YA++VI+GRA+PD+RDGLKPVHRR LF M +MGV +NK 
Sbjct: 2   SDTSKTIDISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GK+HPHG++A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RY
Sbjct: 62  YKKSARIVGDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL DL KDTVDF  NYDG+  EP VL  R P +LVNG  GIAVGMATNI
Sbjct: 122 TEIRLSKISDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+ E++     +ID P  D + ++  + GPDFPT  +I+G   I+ AY TGRGSI I
Sbjct: 182 PPHNITEIISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKDIQTAYRTGRGSITI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE+T   +  I+V EIPY VNKA+M+EKIA+LV+EK+I  I DLRDESD+ G RV
Sbjct: 242 RARVLIEETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+G + DV+LN+LY++T LQ+ F  NMVA+   KP+  +L  IL+ F+  R  VV 
Sbjct: 302 VIELKKGENVDVVLNRLYKFTQLQTSFGFNMVAIVDGKPQTLSLREILEEFLKHRVTVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++LL KA  R H+L GL  AV N+DEV++ I+ S +   A+  L  +          
Sbjct: 362 RRTQFLLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQ---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E+Q ++ILE+RL +LTGL  + ++ E  ++  +I+    I
Sbjct: 412 ----------------FGFTEIQAQSILEMRLQKLTGLEIEKLKEEYENILKDIEYYKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L +RS ++ +IK EL  V D+    RRT I  GL + EDED I   + VVT++H GY+K 
Sbjct: 456 LGNRSVMMSVIKDELQDVLDKYGDDRRTEIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKA 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             LS Y AQ+RGGKG++G   +DEDFV  L + + HT ++FF++ G V+  KV+ LP   
Sbjct: 516 TLLSSYVAQKRGGKGKTGAGSKDEDFVERLIVTTNHTRLMFFTNTGKVHYLKVYALPEAQ 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+ + N+L+L   E + +++  P +    +  Y+ FATK G +++  L +F     
Sbjct: 576 RDAKGRHISNLLTLEPEEFVASVLALPAET---DGKYLFFATKSGTIKKTSLEEFKSGR- 631

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG +A+KL   DEIL+ +  T E+ ++L+TK G+ ++F  +  R   GR++ GVRGI+L 
Sbjct: 632 SGIVAIKLRDGDEILTADITTDEDTVILSTKAGKTIQFSSTDARPM-GRSTSGVRGITLE 690

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+++SM ++  A                                              
Sbjct: 691 ARDELMSMEVLTGA---------------------------------------------- 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   +IL+V+  G+GKRT   ++R+  R GKG++   VS   + G +V    V DN
Sbjct: 705 -------PYILSVTSAGYGKRTPVDEYRVQTRGGKGLKLCRVSP--KTGFVVGAKQVTDN 755

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           D +++++     IR  V  I    R T GV +  T  D+ +++   I+E  I +++++ E
Sbjct: 756 DDVMIITRSAKTIRTEVQGISKMGRDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNE 814



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 91/230 (39%), Gaps = 19/230 (8%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +K+  L  +++ R G      + +RD D +    I +   +V+  +  G   +  
Sbjct: 614 TKSGTIKKTSLEEFKSGRSG---IVAIKLRDGDEILTADITTDEDTVILSTKAGKTIQFS 670

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                   P  R  + +  ++L   + + ++             Y++  T  G  +R  +
Sbjct: 671 STD---ARPMGRSTSGVRGITLEARDELMSMEVLT------GAPYILSVTSAGYGKRTPV 721

Query: 663 SDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            ++ ++   G   +KL         ++  +  T  +D+++ T+  + +R  +  I    G
Sbjct: 722 DEY-RVQTRGGKGLKLCRVSPKTGFVVGAKQVTDNDDVMIITRSAKTIRTEVQGISKM-G 779

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           R+++GV+ +     D +I+ A++       D      +   ++ +  + D
Sbjct: 780 RDTMGVKLMDTGDDD-IIAFAVIKEGTIHEDSDNNEREGTGSEGQGGTED 828


>gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 876

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/911 (38%), Positives = 513/911 (56%), Gaps = 99/911 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD   + L+    + I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MCEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + EVQ  AIL ++L RL  L R  I +E   L I+I +  D
Sbjct: 450 ---------------NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  +      Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F      +R   GR 
Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD+++ M +V                                       
Sbjct: 731 TAGVQGMRFREGDELLDMDVVA-------------------------------------- 752

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 753 -------------AETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E+
Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 857

Query: 901 EIVDEA-ESTE 910
           +  +   E  E
Sbjct: 858 DDEENQLEEKE 868


>gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B]
          Length = 809

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/891 (39%), Positives = 555/891 (62%), Gaps = 86/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +E E GI  V I+ +M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ +
Sbjct: 1   MTDTKEFENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD+++R  L++GQGNFG++DGD  
Sbjct: 61  VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ KDTV+F PN+D   +EP +L +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HN+ EV+DG V  IDN DI +  L E+I+GPDFPTGA+I+GR GI  AY TGR
Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIMGRDGINKAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I +    REQI++TE+PYQVNK+A++ KIAEL ++K I  I+ + D S++
Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+LK+ A+A+V+LN+LY+ T LQ  + +  +AL   +P+   L  +++ +V  +
Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RRT++ LNKA  RAH++ GL IA+ N+D V++IIR S + +    +         
Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKF-------- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                             D    L+++Q++AIL++RL RLTGL R+ ++NE + L  +IK
Sbjct: 413 ------------------DREFSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK ELL +KD+    RRT I     D++ ED I  ED+++T++ +
Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQM 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   Y+ Q+RGG+G + +  +++DFV +LF+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G A++N+L+L++GE+IT+++   E +    N Y++  T+ G +++    +F
Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFD---PNYYLLMVTEKGLIKKTSNKEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G I +KL   D+++SV     + +I+L TK G+ +RF    +R   GRN++GV+
Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRD-QGRNTMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D ++S  IV                                            
Sbjct: 691 SMNLDEDDTIVSSDIVGDG----------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTVSE GFGK T   ++R  NR GKGI    +S+  + G + A  
Sbjct: 710 ------------NYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            VN +D I+L++D G +IR+ +++I + SR T GV + +   D +VV++ +
Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLN-DSKVVAIAK 805



 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 101/267 (37%), Gaps = 61/267 (22%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
              ++       ++  T+ G ++R     +    R   G  A+     D +  +   +  
Sbjct: 496 IDIEDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTH 555

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  T  G+  R     +   AGRN+ G   V  ++L KG+++ S+  V         
Sbjct: 556 DRLLFFTNKGKVYRLKAFEV-PEAGRNAKGTAVVNLLNLDKGEKITSVINV--------- 605

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                    E      ++L V+EKG  K
Sbjct: 606 -----------------------------------------EEFDPNYYLLMVTEKGLIK 624

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +TS+ +F   N    G+    +   ++   L++V  V  +++IILV+ +G  IR   +E+
Sbjct: 625 KTSNKEF--KNIRQNGLIGIKLRDDDK---LISVHLVRGDEEIILVTKEGKSIRFSTDEL 679

Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897
           R   R T GV   +  +D+ +VS + +
Sbjct: 680 RDQGRNTMGVKSMNLDEDDTIVSSDIV 706


>gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 810

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/895 (38%), Positives = 532/895 (59%), Gaps = 88/895 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +   E GI  V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRI++GM  +G+  +
Sbjct: 3   ENVNENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K A + GEVMGK+HPHG+++IYDA AR+AQD+++R  L++GQGNFG+VDGD PAA 
Sbjct: 63  KSYRKSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAP 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K A  +L D+ KDTVDF PNYD    EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEMRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNLGE +   +  I+N DI+++ LM+ I+GPDFPTGA+ILG+ GI +AY TGRG I
Sbjct: 183 NMAPHNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIILGKQGIIDAYKTGRGKI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-G 307
            +R  + IE+    R +IV+TEIPYQVNK  ++ KIA+LV+ K I  I+++RD S  + G
Sbjct: 243 QVRARAEIEEHK-GRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++ I+LKR A+ +V+LN LY+ T +Q  F +  + L   +P+   L  I+K +V  +  
Sbjct: 302 IKIDIDLKRDANPNVVLNNLYKNTQMQITFGIINLCLVNGEPKVLNLKEIIKYYVDHQRN 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL IA+ N+D +++I+R S + + A+ +  +        
Sbjct: 362 VVRRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKE------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+++Q +AIL++R+ RLTGL R+ +  E   L   I + 
Sbjct: 415 -------------------FGLTDIQGQAILDMRIRRLTGLEREKLEQEYQDLIKLIAKL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL ++  L   I +EL  +K++    RRT +     D++ ED I  ED+V+T++  GY
Sbjct: 456 KSILENKKLLDNTIIEELEEIKEKYSDLRRTVLAPDEGDIDSEDLIEEEDVVITLTEFGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+P   Y+ QRRGG G S +  R+EDFV D++I STH ++LFF++ G VY  K + +P
Sbjct: 516 IKRMPEGTYKPQRRGGTGISALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIP 575

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S QA+G A+IN+L+L   E +T ++P         N  +V ATK+G +++   S+F +
Sbjct: 576 ESSRQAKGTAIINLLNLEGDEFVTAVIPVRN---VDENANLVMATKNGLIKKTSYSEFEK 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I ++G IA+ L+  D ++ V   +  ++I++ TK G  +RF  S +R   GR ++GV+ I
Sbjct: 633 IRKNGLIAITLNEGDNLIGVRLTSGRDEIMIVTKNGMAIRFSESDVRNM-GRTAMGVKSI 691

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D+V+S  I                                               
Sbjct: 692 DLKNDDEVVSFEI----------------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    ++++L +SE GFGK T   ++R  NR+G G+     ++  + G LV+   +
Sbjct: 705 ------PQDDKYLLVISENGFGKMTKMTEYRKQNRAGVGLLTYKATE--KSGKLVSAKVI 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + +D+I++++  G +IR+    I +  R T GV + +    E VVSV +    EI
Sbjct: 757 DKSDEIMIITVSGIIIRIGCEGISVMGRHTTGVKLMNIKDSE-VVSVAKYIGEEI 810


>gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
 gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320]
          Length = 877

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/843 (44%), Positives = 529/843 (62%), Gaps = 19/843 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +AY TGRG I IR  +
Sbjct: 187 LGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDAYRTGRGKIYIRAQA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+V+E
Sbjct: 247 DIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ AF+  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIAAFIRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D V+ +IR +P P  A+  L+ + W+   +  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAMLER 426

Query: 434 IDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             DS+              DG  YL+E Q +AIL+LRL +LTGL  + + +E   L ++I
Sbjct: 427 AGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLLQI 486

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E L IL S  RL+ +I++EL ++K + + PRRT I E   D+  ED I  E++VVT+SH
Sbjct: 487 AELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSH 546

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV+
Sbjct: 547 QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVY 606

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  AT  G V++  L D
Sbjct: 607 QLPEASRGARGRPIINLLPLEQDERITAILPVREYE---EGKFVFMATASGTVKKTPLQD 663

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F +   +G IA+ L+  DE++ V+     N+ +L +  G+ VRF    +R   GR + GV
Sbjct: 664 FSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAEECVRPM-GRTATGV 722

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RG+ L   D+V+S+ I                  + Q    + +    T       V   
Sbjct: 723 RGMKLVDDDKVVSLIIPRGEGDILTVTENGYGKRTVQSEYPTKN--RATQGVISIKVSER 780

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +        +   I+ ++  G   RT   +  I  R+ +G+     ++      +V +
Sbjct: 781 NGKVVGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLIRTTEDEL---VVGL 837

Query: 845 FPV 847
             V
Sbjct: 838 QRV 840



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R      +   +    + +  N ++   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 504 REELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRR 563

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            GKG  A  + + + I  L      N +D I+  S +G L  + V ++  ASR  +G  I
Sbjct: 564 GGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPI 620

Query: 883 FS---TAKDERVVSVERIRESEI 902
            +     +DER+ ++  +RE E 
Sbjct: 621 INLLPLEQDERITAILPVREYEE 643



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 131/426 (30%), Gaps = 31/426 (7%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +  +  H+L      +  + E +  I+   N           +   
Sbjct: 471 EHEKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADIN 530

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483
            +     + +  +    G      L++ + +       +       D I   L +   + 
Sbjct: 531 IEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDT 590

Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
                       + +        G   + ++++       R T I+              
Sbjct: 591 ILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVRE-------YEE 643

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              V   +  G VK+ PL  +   R  G     +   DE    DL         + FS+ 
Sbjct: 644 GKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEAMLFSAD 701

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V +     +      A G   + ++  ++                     ++  T++G
Sbjct: 702 GKVVRFAEECVRPMGRTATGVRGMKLVDDDK---------VVSLIIPRGEGDILTVTENG 752

Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R   S++   NR+ +  + +       +++      + + I++ T  G  VR  +S 
Sbjct: 753 YGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSE 812

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +    GRN+ GV  I   + + V+ +  V   D   D+             +   +  + 
Sbjct: 813 V-SIVGRNTQGVTLIRTTEDELVVGLQRVEDEDDALDDDEVDEMISDNISDVPESEPTDD 871

Query: 773 TSLKND 778
              + +
Sbjct: 872 ADSEEE 877


>gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
 gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101]
          Length = 894

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/869 (43%), Positives = 536/869 (61%), Gaps = 42/869 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849
            R+ +G+     S+     ++V +  +++
Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 894

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/869 (43%), Positives = 536/869 (61%), Gaps = 42/869 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND 849
            R+ +G+     S+     ++V +  +++
Sbjct: 840 GRNTQGVTLIRTSEGE---SVVGLQRIDE 865



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 469 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 527 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 574

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 575 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 634

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 635 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 692

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 693 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 752

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 753 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 812

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 813 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 871

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 872 PEGEEALVENDAPVAQDDDGEQE 894


>gi|291455698|ref|ZP_06595088.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
 gi|291382626|gb|EFE90144.1| DNA gyrase, A subunit [Bifidobacterium breve DSM 20213]
          Length = 896

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/918 (37%), Positives = 515/918 (56%), Gaps = 97/918 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +       E  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M 
Sbjct: 27  ADTTDYGLMESGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 86

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R LL++GQGNFGS  
Sbjct: 87  DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNLLVDGQGNFGSPG 146

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  G
Sbjct: 147 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 206

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HN+ EV +G    +++PD   + L+     II+GPDFPTGA ILG  GI
Sbjct: 207 IAVGMATNIPPHNMREVAEGVHWALEHPDASREELLENLIRIIKGPDFPTGATILGHKGI 266

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRG I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IA
Sbjct: 267 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 325

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L  
Sbjct: 326 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 385

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            ++ +V  + +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  
Sbjct: 386 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 445

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+                           + + +VQ  AIL ++L  LT + RD I  E
Sbjct: 446 LME--------------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAE 479

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  +I + +DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E
Sbjct: 480 HEELQRKIADYIDILAKPERQRKIIGDELDEIVGKYGDERRTKILPFSGEMNVEDLIAEE 539

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVTV+H G++KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G
Sbjct: 540 NVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 599

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP GS  ++G+ + N+L     E I  ++  P  E      Y+V AT+ G 
Sbjct: 600 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQAVLSIPNYEV---AKYLVLATRSGK 656

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710
           V++  L+++    + G IA++L +       DE++    C  E+DI+L +KLG  ++F  
Sbjct: 657 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 716

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +   +R   GR + GV+G+   +GD++++M +V                           
Sbjct: 717 NDEQLRPM-GRQTAGVQGMKFREGDELLAMDVV--------------------------- 748

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++ +  V+ +GF KRT+  ++R+  R+G GI+
Sbjct: 749 ------------------------WGDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 784

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A  + +    G+LV    V+++DQ++ +   G +IR  V+E++   R T+GV      K 
Sbjct: 785 AVQLVEG--RGSLVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 842

Query: 889 ERVVSVERIRESEIVDEA 906
           + ++S+ R  E +  +E 
Sbjct: 843 DEILSIARNEEKDDPEEE 860


>gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
 gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906]
          Length = 883

 Score =  819 bits (2115), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/857 (44%), Positives = 534/857 (62%), Gaps = 21/857 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    SD    + IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MRDSGSMSD--IAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSV
Sbjct: 59  NVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH LL DL K+TVDF PNYDG+   P V+  R PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+DGC+A +DN DI ++ LME I GPDFPT A+I GR GI +A
Sbjct: 179 GIAVGMATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAIINGRRGILDA 238

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG I IR  + IE      RE I+VTEIPYQVNKA ++EKIAELV++KRI  I+ L
Sbjct: 239 YRTGRGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGL 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G R+V+E+KR A  +V+LN L+  T +Q  F +NMVAL+  +P+   L  I+ 
Sbjct: 299 RDESDKDGMRIVVEIKRDAVGEVVLNHLFSQTQMQVSFGINMVALHQGQPKLLNLKEIIA 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+  R EVV RRT + L KARDRAH+L  LA+A+AN+D V+ +IR +P P  A+  L+ 
Sbjct: 359 AFIRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIA 418

Query: 420 RSWNASDIKDLIDLIDDSSYTIGS---------DGTMYLSEVQTRAILELRLARLTGLGR 470
           + W+   +  +++   DS+              DG  YL+E Q +AIL+LRL +LTGL  
Sbjct: 419 QPWDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEH 478

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + + +E   L ++I E L IL S  RL+ +I++EL ++K + + PRRT I E   D+  E
Sbjct: 479 EKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADINIE 538

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E++VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L
Sbjct: 539 DLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 598

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSS G +Y  KV++LP  S  ARG+ +IN+L L Q ERIT I+P  E E      +V  
Sbjct: 599 CFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVREYE---EGKFVFM 655

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L DF +   +G IA+ L+  DE++ V+     N+ +L +  G+ VRF  
Sbjct: 656 ATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDLTDGSNEAMLFSADGKVVRFAE 715

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GVRG+ L   D+V+S+ I                  + Q    + +  
Sbjct: 716 ECVRPM-GRTATGVRGMKLVDDDKVVSLIIPRGEGDILTVTENGYGKRTVQSEYPTKN-- 772

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
             T       V     +        +   I+ ++  G   RT   +  I  R+ +G+   
Sbjct: 773 RATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSEVSIVGRNTQGVTLI 832

Query: 831 DVSKINEIGALVAVFPV 847
             ++      +V +  V
Sbjct: 833 RTTEDEL---VVGLQRV 846



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R      +   +    + +  N ++   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 510 REELTAIKTQYNDPRRTEITENTADINIEDLINEENVVVTLSHQGYVKYQPLTDYEAQRR 569

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            GKG  A  + + + I  L      N +D I+  S +G L  + V ++  ASR  +G  I
Sbjct: 570 GGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPI 626

Query: 883 FS---TAKDERVVSVERIRESEI 902
            +     +DER+ ++  +RE E 
Sbjct: 627 INLLPLEQDERITAILPVREYEE 649



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/426 (13%), Positives = 131/426 (30%), Gaps = 31/426 (7%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   + LL +  +  H+L      +  + E +  I+   N           +   
Sbjct: 477 EHEKLLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDPRRTEITENTADIN 536

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE- 483
            +     + +  +    G      L++ + +       +       D I   L +   + 
Sbjct: 537 IEDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDT 596

Query: 484 --------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
                       + +        G   + ++++       R T I+              
Sbjct: 597 ILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERITAILPVRE-------YEE 649

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              V   +  G VK+ PL  +   R  G     +   DE    DL         + FS+ 
Sbjct: 650 GKFVFMATASGTVKKTPLQDFSRPRSAGIIAVNLNDGDELIGVDL--TDGSNEAMLFSAD 707

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V +     +      A G   + ++  ++                     ++  T++G
Sbjct: 708 GKVVRFAEECVRPMGRTATGVRGMKLVDDDK---------VVSLIIPRGEGDILTVTENG 758

Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             +R   S++   NR+ +  + +       +++      + + I++ T  G  VR  +S 
Sbjct: 759 YGKRTVQSEYPTKNRATQGVISIKVSERNGKVVGAIQVEETDQIMMITNAGTLVRTRVSE 818

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +    GRN+ GV  I   + + V+ +  V   D   D+             +   +  + 
Sbjct: 819 V-SIVGRNTQGVTLIRTTEDELVVGLQRVEDEDDALDDDEVDEMISDNISDVPESEPTDD 877

Query: 773 TSLKND 778
              + +
Sbjct: 878 ADSEEE 883


>gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 876

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/911 (38%), Positives = 513/911 (56%), Gaps = 99/911 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD   + L+    + I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + EVQ  AIL ++L RL  L R  I +E   L I+I +  D
Sbjct: 450 ---------------NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  +      Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFAPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F      +R   GR 
Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD+++ M +V                                       
Sbjct: 731 TAGVQGMRFREGDELLDMDVVA-------------------------------------- 752

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 753 -------------AETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E+
Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 857

Query: 901 EIVDEA-ESTE 910
           +  +   E  E
Sbjct: 858 DDEENQLEEKE 868


>gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
 gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1]
          Length = 827

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/912 (39%), Positives = 555/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  +
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIES 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEERLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SISYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKKGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+GI LA+ D V+   ++                                     
Sbjct: 686 RTTRGVKGIRLAENDFVVGAVVISDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  NR GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQNRGGKGIIGMRLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V   
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E+T
Sbjct: 810 PKEEEPENLENT 821


>gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 898

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/918 (37%), Positives = 511/918 (55%), Gaps = 110/918 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC
Sbjct: 20  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKC 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR
Sbjct: 80  SRVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 139

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP+HN
Sbjct: 140 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHN 199

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + E+ +G    +++P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 200 MREIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 259

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 260 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQR 318

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY++T LQ  F  NM+AL    P   +L   ++ ++  + +VV
Sbjct: 319 LVLVLKRDAVPKVVLNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWINHQLQVV 378

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  ++EV+ +IR SP+ E AR  LM           
Sbjct: 379 ERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLM----------- 427

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + ++Q  AIL ++L RL  L R  I +E   L   I++  D
Sbjct: 428 ---------------DLLDVDQIQADAILAMQLRRLAALERQKIIDEHEELLRRIEDYND 472

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R   I+  E+  + D+    RRT+I+    +M  ED I  E++VVTV+H GY+K
Sbjct: 473 ILAKPDRQRKIVGDEMDEIVDKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTHSGYIK 532

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P G
Sbjct: 533 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEG 592

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L L   E+I  ++   + ++     Y+V AT+ G +++ +L ++    
Sbjct: 593 SRDSKGQHVANLLQLGPDEKIQQVLSIKDYQT---ASYLVLATRSGKIKKTRLDEYDSAR 649

Query: 670 RSGKIAMKLDSR----------------DEILSVETCTQENDILLTTKLGQCVRFPISA- 712
           + G IA++L                   DE++    C  +++I++ ++ G  V+F     
Sbjct: 650 QGGLIAVRLREIEGAFRTDKEGNQVPLVDELIGAALCNDDDEIIVVSQKGMSVKFSADDQ 709

Query: 713 -IRVFAGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +R   GR + GV+ +        D ++SM +V                           
Sbjct: 710 TLRPM-GRQTAGVQAMKFRGKPGDDLLLSMDVVPQG------------------------ 744

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       +  +L V+ +GF KRT+  ++R+  R+G G++
Sbjct: 745 ---------------------------TDSDLLVVTNEGFAKRTALSEYRLQGRNGYGVK 777

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++ +    G L+    V ++DQ++ +   G +IR  V+EI+   R T+GV +    K 
Sbjct: 778 AINLVEG--RGNLIGAIVVAEDDQVMAIMKSGKVIRSDVSEIKRTGRNTQGVTLAKPDKG 835

Query: 889 ERVVSVERIRESEIVDEA 906
           + ++SV R  E+E  DE 
Sbjct: 836 DEIISVARNAETEDQDEP 853


>gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
 gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna
           ATCC 53516]
          Length = 806

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/892 (39%), Positives = 546/892 (61%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKLNIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIMGLEEVKNAYTTGRGKVK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE++   R +I+VTEIPYQVNK+ +++KIA+LV++K++  I+DLRDESDR+G R
Sbjct: 242 LRAEARIEESK-GRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +    +               
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEK--------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 406 -------------LMQRFGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEQLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  +K +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++   +D+   ++ +++F TK+G V++  L  +  I 
Sbjct: 573 SRTARGSNIINLIQIDADESVTQVLALDKDK--EDDQFIIFITKNGKVKKTSLDLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V   +                                            
Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    F+  +SE G+GK+T   ++   NR GKGIR   ++K  + G +     + +
Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
            D+I+L+S K  +IR+    I   SR+T GV++ +T K  + +V+V +  E 
Sbjct: 755 EDEILLISKKAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 27/244 (11%)

Query: 676 MKLDSRDEILSVETCTQEN-----------DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +K    D+  +       +             +  T  G   R    A +V   R   GV
Sbjct: 471 IKTKYSDDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKV-QHRGGRGV 529

Query: 725 RGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             + +  GD +  M                ++  +K         +     I +L    +
Sbjct: 530 NAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDA 589

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINE 837
            E         + K  +QFI+ +++ G  K+TS   +   R +     GI A    +   
Sbjct: 590 DESVTQVLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKT-----GIIAIKFDEG-- 642

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              L+ V  V  N+ +I+V+ KG  ++  V+++R  SR   GV   +  KD+ V+S + +
Sbjct: 643 -DELIDVKLVEKNENVIIVTKKGMSLQFNVDQLRDLSRNAIGVKAITLNKDDEVISFDLV 701

Query: 898 RESE 901
           +++E
Sbjct: 702 KDNE 705



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 95/236 (40%), Gaps = 23/236 (9%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KG 732
           +D+ DEI+ +   + ++ +    +     RF  S I+      +  +  + L      + 
Sbjct: 385 IDNIDEIIHIIRTSYDDALEKLMQ-----RFGFSEIQ------AQAILDMRLKRLQGLEK 433

Query: 733 DQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           +++ +    +        E +     +    +    + +   S    + +  +  +    
Sbjct: 434 EKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSDDRRTKILRDDGDFEDM 493

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           EL  +E   +T++ KG+ KR S+  +++ +R G+G+ A  +   + I  + A      + 
Sbjct: 494 ELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTT---HQ 550

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            ++  ++KG +  +   E+  ASR  +G  I +      DE V  V  + + +  D
Sbjct: 551 DLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVTQVLALDKDKEDD 606


>gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum]
          Length = 817

 Score =  819 bits (2114), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/903 (40%), Positives = 540/903 (59%), Gaps = 93/903 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +   S+ +EM+ SYL YA++VI+ RA+PD+RDGLKPV RR+L+ M ++G  ++K Y 
Sbjct: 3   DQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKPYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+ +GKYHPHG+  +Y+A+ RM Q +S+R  LI+GQGNFGSVDGD PAA RYTE
Sbjct: 63  KSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K+TVDFR NYDGS  EPVVL AR+PNVLVNG  GIAVGM+TNIP 
Sbjct: 123 VRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++++P   +D LM+ ++GPDFPT   I GRTGI++AY TGRGS+ +R 
Sbjct: 183 HNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFICGRTGIRDAYLTGRGSVTLRA 242

Query: 253 VSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            + I+    K   +R+ IVVTE+PYQVNKA++LEKIAELV EK+I  IADLRDESDR+G 
Sbjct: 243 RAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDREGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A V+LN L++YT +QS   + M+A+   +P+   L+ +L  FV  R EV
Sbjct: 303 RVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGRPQVLNLVEMLNYFVEHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KA  R H+L GL  A+  L+ ++ +IR + +   AR  LM R        
Sbjct: 363 VRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTR-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS VQ +AILE++L RLT L R  +  E   L   + E  
Sbjct: 415 ------------------FALSRVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELR 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGY 547
           +IL   ++L  +I QEL  V+    TPRRT+IV+    D   ED I +E++V+T++  GY
Sbjct: 457 EILDKEAKLREVIVQELQEVRKAYGTPRRTQIVDCESTDFTIEDLIPKEEVVITITREGY 516

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR P+S YR Q+RGG GR G+  + ED V  L+I STH+ +L F++ G VYK +V  +P
Sbjct: 517 IKRTPVSAYRTQKRGGVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIP 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +   RGKA++N++ L +GERI   +P  E     +  ++VFAT+ G +++ +LS++  
Sbjct: 577 DAATSGRGKAIVNLIELPEGERIAGTIPVREFA---SGQFIVFATRRGIIKKTELSEYAN 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G +AM +   DE+++V+       IL++T  GQ + F  S +R   GR + G+ GI
Sbjct: 634 IRSNGIVAMGIAEDDELVAVQKSDGSRHILISTFGGQAICFKESDVRP-TGRMAQGIIGI 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L + D V  M++V   +                                          
Sbjct: 693 RLRENDYVTGMSVVGRTED----------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL++SE G  KRT   ++ + +R G+G+    V++    G ++   PV
Sbjct: 712 ------------ILSLSELGLSKRTPITEYPVHHRGGQGVATMYVTER--TGGVIKTLPV 757

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           +++D+ ++++ +G + R+ V+++R   R  +GV + + A+ +RVV    +   E+  E  
Sbjct: 758 HEDDEFMVITQQGQVARLKVSDVRQTKRLAQGVKVIALAEGDRVVDACLV---ELSAEEP 814

Query: 908 STE 910
            TE
Sbjct: 815 VTE 817


>gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695]
 gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A
 gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695]
          Length = 827

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/911 (39%), Positives = 551/911 (60%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR
Sbjct: 627 NLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREI-GR 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV GI L + D V+   ++                                      
Sbjct: 686 TTRGVIGIKLNENDFVVGAVVISDDGNK-------------------------------- 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 714 --------------------LLSVSENGLGKQTLAEAYRGQSRGGKGVIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V    
Sbjct: 752 NLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAEST 909
           + E  +  E++
Sbjct: 810 KEEEPENLETS 820


>gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27]
 gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27]
          Length = 833

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 553/913 (60%), Gaps = 91/913 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++ +  +   E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP H + E++D    V++NP+  LD ++E ++GPDFPTG +I G+ GI  
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIVE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++
Sbjct: 241 AYKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+
Sbjct: 300 RDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLR 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+
Sbjct: 360 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q++AILE+RL RLTGL RD I+ E  +
Sbjct: 420 R--------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQN 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +   IL S  RL G++K ELL VK++  +PR T I E   +++ ED I  E MV
Sbjct: 454 LLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRHTEIQESYENIDIEDLIANEPMV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y
Sbjct: 514 VSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R
Sbjct: 574 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKR 630

Query: 660 NKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717
             LS+F        I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   
Sbjct: 631 TNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNVKHLLIASHLGIFIKFPLEDVREI- 689

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GV+GI LA+ D V+   ++                                    
Sbjct: 690 GRTTRGVKGIRLAENDFVVGAVVISDDGNK------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L+VSE G GK+T +  +R  +R GKGI    +++  +
Sbjct: 720 ----------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMRLTQ--K 755

Query: 838 IGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V  
Sbjct: 756 TGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNS 813

Query: 897 IRESEIVDEAEST 909
             + E  +  E++
Sbjct: 814 CPKEEEPENLETS 826


>gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202]
 gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60]
          Length = 878

 Score =  818 bits (2113), Expect = 0.0,   Method: Composition-based stats.
 Identities = 382/850 (44%), Positives = 540/850 (63%), Gaps = 22/850 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYTQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++  
Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLAR 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRAAGIIAVNLNYGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ IV H +              +        +     + +    E N 
Sbjct: 723 GIKLAGEDRVVSL-IVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNG 781

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843
           S     +++  +Q I+ +++ G   RT   +  I  R+ +G+     ++      +V   
Sbjct: 782 SVVGAVQVEDCDQ-IMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDE---HVVGLQ 837

Query: 844 --VFPVNDND 851
             V PV+D D
Sbjct: 838 RVVEPVDDED 847



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/412 (16%), Positives = 144/412 (34%), Gaps = 38/412 (9%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS-----PNPETARRELMQRSWNASDIK 428
           + LL++ +     +  L   + + + ++ +IR            ARR  +  +    +I+
Sbjct: 472 EKLLDEYKALLEQIAALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIE 531

Query: 429 DLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE--- 483
           DLI+  D            Y  LS+ + +       +       D I   L +   +   
Sbjct: 532 DLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 591

Query: 484 ------IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                     + +        G   + ++++       R T I+      E  +      
Sbjct: 592 CFSSRGRMYWMKVYQLPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN------ 645

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL     +  V+ FS+ G 
Sbjct: 646 -VFMATASGTVKKTALTEFSRPRAAGIIAVNLNYGDELIGVDL--TDGNDEVMLFSAAGK 702

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +R+ +++             ++  T++G  
Sbjct: 703 VVRFKEDAVRAMGRTATG---VRGIKLAGEDRVVSLI------VPHGEGAILTVTQNGYG 753

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ ++++   +R+ +  + +        ++        + I++ T  G  VR  +S + 
Sbjct: 754 KRSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTLVRTRVSEV- 812

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              GRN+ GV  I  A+ + V+ +  V+    D D              ++ 
Sbjct: 813 SIVGRNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGSAAEGDDEIVP 864


>gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
 gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM
           15434]
          Length = 860

 Score =  818 bits (2112), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/919 (38%), Positives = 510/919 (55%), Gaps = 95/919 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E+    I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG+ 
Sbjct: 61  YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
               PAA RYTEC++   A  ++ D+ +++VDF+ NYDG  QEP +L AR+PN+LVNG  
Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV  G    +++PD   + L+    E I GPDFPTGA ILGR G
Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATILGRRG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+ ++  I
Sbjct: 241 IEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    P   +L 
Sbjct: 300 ADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGVPRTLSLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V  + +V+VRR+++ L KA++R H+L G   A+  LD V+ +IR S   + AR 
Sbjct: 360 GFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADEARG 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                          G + + EVQ  AIL L+L RL  L R  I+ 
Sbjct: 420 GLM--------------------------GLLGVDEVQADAILALQLRRLAALERLKIQQ 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  ++ +  DI++S  R  GI+  EL  + ++    RRTRIV    +M  ED I  
Sbjct: 454 EAEELQAKVADLKDIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMSMEDLIPE 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  +LFF++L
Sbjct: 514 EEVVVTITRSGYAKRTRTDAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNL 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G   A+G+ + N+L+   GE I  +M   + E      ++V ATK G
Sbjct: 574 GRVYRAKAYELPEGGRDAKGQHVANLLAFQPGEEIAQVMELKDYE---QADFLVLATKRG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +LS++      G IA+ L        DE++S    ++  D+LL ++ GQ  RF  
Sbjct: 631 LVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDLLLVSRHGQSARFHA 690

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           S   +R   GR + GV G+    GD +++M +V     D D                   
Sbjct: 691 SDDVLRP-TGRATSGVTGMRFRDGDWLLAMDVVDPQWTDAD------------------- 730

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +  V+E G+ KRT+  ++    R G G++
Sbjct: 731 -------------------------------LFVVTEGGYAKRTNVAEYPTKGRGGLGVK 759

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++ +  E G LV       +D+++ + + G ++R  V+E+ +  R T+GV        
Sbjct: 760 VANLVE--ERGDLVGALVTAPSDEVLCIMESGKVVRSRVDEVSVTGRNTQGVTFAKPDDG 817

Query: 889 ERVVSVERIRESEIVDEAE 907
           +R+++V R  E E+  + E
Sbjct: 818 DRIIAVARNTERELDGDDE 836



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 13/248 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSV 589
             + D +V  +  G VK+  LS Y + R GG     +    +    +L           +
Sbjct: 617 YEQADFLVLATKRGLVKKTRLSEYDSNRSGGVIAINLREDADGNPDELVSARLLSEGQDL 676

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  S  G   +       +  P  R  + +  +    G+    ++     +  W +  + 
Sbjct: 677 LLVSRHGQSARFHASD-DVLRPTGRATSGVTGMRFRDGD---WLLAMDVVDPQWTDADLF 732

Query: 650 FATKHGNVRRNKLSDFIQINRSG--KIAMKLDS--RDEILSVETCTQENDILLTTKLGQC 705
             T+ G  +R  ++++    R G       L     D ++        +++L   + G+ 
Sbjct: 733 VVTEGGYAKRTNVAEYPTKGRGGLGVKVANLVEERGD-LVGALVTAPSDEVLCIMESGKV 791

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR  +  +    GRN+ GV       GD++I++A     + D D+        +     +
Sbjct: 792 VRSRVDEV-SVTGRNTQGVTFAKPDDGDRIIAVARNTERELDGDDEPAAPADQAQDAVAL 850

Query: 766 SGDTEEIT 773
           S D E   
Sbjct: 851 SEDDESED 858


>gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
 gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145]
          Length = 993

 Score =  817 bits (2111), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/970 (38%), Positives = 539/970 (55%), Gaps = 81/970 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H LL DL KDTV++  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  ++P I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+VI+N L++ T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W    +  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLE 423

Query: 433 LID------------DSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                          D S   G DG    LS  Q  AI+ELRL RLTGL +D +  E + 
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +I++EL  +  +    R+T IVE  +D   ED I  E MV
Sbjct: 484 ILSQIAELTAILNDFNLLMNVIREELALILQQYGDARKTSIVESRIDFSREDLIPEEQMV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S+H +VL F+++G VY
Sbjct: 544 LTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P  S  A+G+ ++N+L L++ E IT I+P  +    +      F      V+ 
Sbjct: 604 RLKVYEVPQASRGAKGRPMVNLLPLDENETITAILPVIDAPKKFKERLAAF---KAFVKA 660

Query: 660 NKLSDFIQINRSGKIA---------------------MKLDS---------------RDE 683
           N          +   A                     ++L                  D 
Sbjct: 661 NAAQLQANEVINAHFAELEAALTESEDGADDISDALRIQLKQLGLELSATDLDDDIINDF 720

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI--- 740
               E   +   + + T+ G   R     +  F+   S G+R I L   D +I +AI   
Sbjct: 721 AQQAEAVRKNFYVFMATEYGTIKRV---ELEQFSNVRSNGLRAIELNGDDTLIGVAITDG 777

Query: 741 --------------------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                               V                + A  +L   D  EI S   D S
Sbjct: 778 EQQIMLFSNEGKAIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGS 837

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
               IS      +  +   +L  SE G+GKRT   DF    R GKG+ A   S+ N  G 
Sbjct: 838 DSALISRIVSLVVVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GQ 895

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    ++ + +++L+SD GTL+R   +E+    R  +GV +     +E +V V  I   
Sbjct: 896 LVGAVAIDASKELMLISDGGTLVRTRASEVAQTGRNAQGVRLIRLGNEELLVGVVSIEAV 955

Query: 901 EIVDEAESTE 910
           E  +  E+ E
Sbjct: 956 EEDEFVEAIE 965



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 90/265 (33%), Gaps = 23/265 (8%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G +KRV L  +   R  G     + +  +D +  + I      ++ FS+ G 
Sbjct: 732 YVFMATEYGTIKRVELEQFSNVRSNG--LRAIELNGDDTLIGVAITDGEQQIMLFSNEGK 789

Query: 598 VYKEKVWRLPIGSPQARGKALINIL-----------------SLNQGERITTIMPFPEDE 640
             +     +      A+G   + +                      G     I       
Sbjct: 790 AIRFAETDVRSMGRSAKGVRGMRVTIGAAAQLEENDETEIESDDEDGSDSALISRIVSLV 849

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDIL 697
                  V+ A+++G  +R  + DF    R   G IA+K      +++         +++
Sbjct: 850 VVPETGEVLCASENGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGQLVGAVAIDASKELM 909

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G  VR   S +    GRN+ GVR I L   + ++ +  +   + D          
Sbjct: 910 LISDGGTLVRTRASEV-AQTGRNAQGVRLIRLGNEELLVGVVSIEAVEEDEFVEAIEGAE 968

Query: 758 MSAQRRLISGDTEEITSLKNDSSVE 782
                  ++ +TE++     +S  E
Sbjct: 969 SLVAETDVAAETEQVAKDGENSVEE 993


>gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293]
 gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293]
          Length = 818

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/899 (40%), Positives = 523/899 (58%), Gaps = 86/899 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  +  +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  ++
Sbjct: 2   EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KC RI G+V+GKYHPHG+ +IYDAL R+AQD+S+R  ++  QGNFGSVDGDPPAA R
Sbjct: 62  AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ + A  +L D+ K+TVD+ PNYD S QEP+VL   +P +L NG  GIAVGMATN
Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV    VA I++ +I +D LM+ I+GPDFPTG +I GR GIK A+ TG+G I 
Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIFGRRGIKQAFRTGKGKIT 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE T   +++I+VTEIPY VNKA ++ KIA+LV+EKRI  I+DLRDESDR G R
Sbjct: 242 VRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG    V+LNQL+ +T+LQ  F+V  +AL    P++  L  ++  FV  R EVV
Sbjct: 302 IVIELKRGTVPKVVLNQLFSHTALQQNFNVTNLALVDGMPKQLNLKELVHYFVRHRVEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L GL IA+ N+DEVV+II+ S +   AR  LM+R         
Sbjct: 362 TRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q++AIL++RL +LT L    I  EL  +   I    D
Sbjct: 413 -----------------FKLSERQSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKD 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +LSS  ++LG+++ E   +  +    R+T IV + + ++  ED I +EDMVV VS+ G++
Sbjct: 456 LLSSEQKILGVVRDETEEIAQKYGDDRKTEIVADEVEEINIEDLIQKEDMVVLVSNKGFI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRVP+S YR Q RGGKG S   + +EDF+  LFI STH  +LF ++ G  Y  KV  +P 
Sbjct: 516 KRVPVSSYRNQGRGGKGSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  +RG  +  +L ++  E ITTI+   E        Y+  AT  G V++ K SDF   
Sbjct: 576 GSRASRGTHIKALLEISANEDITTIVSLQEFS---EEHYLFMATARGIVKKVKTSDFRNA 632

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA+KLD+ D +++      +++I++ ++ G  +RF    +R   GR S GV GI 
Sbjct: 633 RTRGIIAIKLDNGDTLITAVLTRGDSEIVIVSRNGNALRFHEDQVRAM-GRASRGVTGIR 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++  +  V   +                                           
Sbjct: 692 LQSDDELAGILRVEDNEK------------------------------------------ 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L +SE G GKR     F +  R  +G  A   S+ +  G +V V  V 
Sbjct: 710 -----------MLLLSENGLGKRVEYDHFSLHGRGTRGQIAYKTSERS--GEIVGVLSVL 756

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           + D ++ ++ +G  I++ V+++ +  +  +GV I +    + VV V R+   +  +E +
Sbjct: 757 EEDDLVCITSQGNTIKLHVSDVPVQGKTAQGVNIVTITAPDVVVDVARVMNDKDEEEDQ 815


>gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
 gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05]
          Length = 876

 Score =  817 bits (2110), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/911 (38%), Positives = 513/911 (56%), Gaps = 99/911 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + ++ +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD   + L+    + I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V  + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVTHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + ETAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLM----------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + EVQ  AIL ++L RL  L R  I +E   L I+I +  D
Sbjct: 450 ---------------NLLDVDEVQADAILAMQLRRLAALERQKILDEHEDLMIKIADYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRT+I+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  +      Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F      +R   GR 
Sbjct: 672 QGGLIAVRLMANEETGEPVDELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   +GD+++ M +V                                       
Sbjct: 731 TAGVQGMRFREGDELLDMDVVA-------------------------------------- 752

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 753 -------------AETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V + DQ++ +   G +IR  +NE++   R T+GV +    K + ++S+ R  E+
Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDINEVKRTGRTTQGVTLAKPDKGDEIISIARNEET 857

Query: 901 EIVDEA-ESTE 910
           +  +   E  E
Sbjct: 858 DDEENQLEEKE 868


>gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 879

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/910 (38%), Positives = 511/910 (56%), Gaps = 98/910 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD     L+    + I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + +TAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I++  D
Sbjct: 450 ---------------NLLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + LP G
Sbjct: 555 RTKADEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEG 614

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L    GE I  ++  P  +      Y+V AT+ G V++  L ++    
Sbjct: 615 SRDSKGQHVANLLQFTPGETIQAVLSIPNYDV---AKYLVLATRSGKVKKTALQEYDSPR 671

Query: 670 RSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           + G IA++L +        DE++    C  E+DI+L +KLG  ++F      +R   GR 
Sbjct: 672 QGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQ 730

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+   + D+++ M +V                                       
Sbjct: 731 TAGVQGMRFREDDELLDMDVVS-------------------------------------- 752

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            + +L V+ +GF KRT+  ++R+  R+G G++A  +++    G+
Sbjct: 753 -------------VETSKDLLVVTNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGS 797

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V + DQ++ +   G +IR  VNE++   R T+GV +    K + ++S+ R  E 
Sbjct: 798 LVGALIVEETDQVMAIMKSGKVIRSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEER 857

Query: 901 EIVDEAESTE 910
           +   + ++ E
Sbjct: 858 DDESDNKNEE 867


>gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614]
 gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614]
          Length = 922

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/926 (37%), Positives = 512/926 (55%), Gaps = 70/926 (7%)

Query: 1   MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MTE                   I  V +   MQ +Y+ YA+ VI+GRA+PD+RDGLKPVH
Sbjct: 1   MTETPTDGGSTPPSDGGGPGGRIEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G   ++ + KC+R+ G+VMG+YHPHG+ AIYD L R+AQ W +R  LI G
Sbjct: 61  RRVLYAMYDGGYRPDRGFSKCSRVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   D  AA RYTECR+   A  ++ D+ +DTVDF+PNYDG  QEPVVL AR+PN
Sbjct: 121 QGNFGSPGNDSAAAMRYTECRMAPLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV +G    +++PD   +     L+E I+GPDFP GA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAEGARWALEHPDATREELQDALIERIKGPDFPNGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           +I+GR GI+ AY TGRGSI  R V  +++ +  R  +V+TE+PY VN   +  KIAEL  
Sbjct: 241 LIVGRQGIEQAYRTGRGSITQRAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELAD 300

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
             ++  I+D+RD+ SDR G R+V+ LKR A A V+LN L ++T LQ+ FS NM+AL    
Sbjct: 301 SGKVQGISDVRDDTSDRTGQRLVVVLKRDAVARVVLNNLLKHTELQTNFSANMLALVDGV 360

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P    +   +  +V  + +V+ RRT+Y L +A  RAHVL GL  A+  LDEV+ +IR SP
Sbjct: 361 PRTLAIDQFISNWVTHQIDVIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSP 420

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           +   AR  L+                            + + EVQ  AIL+++L +L  L
Sbjct: 421 DVAEAREGLIA--------------------------LLDIDEVQATAILDMQLRQLAAL 454

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I ++L  +   I +  DIL++ +R   I+  EL  + +     RR++I+    D+ 
Sbjct: 455 QRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYGDDRRSQIIAADGDLS 514

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  E++VV+++  GY KR     YR QRRGGKG  G  +R +D V      + H  
Sbjct: 515 MEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKGVRGATLRGDDVVEHFIATTNHHW 574

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP  S  A+G  +  +LS    E I  ++   + +      Y+
Sbjct: 575 LLFFTTAGRVYRTKAYNLPEASRDAKGGHVAGLLSFQPDENIAQVLAIRDYD---QAPYL 631

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
           V AT+ G V++ +L D+    ++G IA+      DE++  E    E+ ILL ++ GQ VR
Sbjct: 632 VLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGAELVNPEDHILLVSRKGQSVR 691

Query: 708 FPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           F      +R   GR + GV G+    GD ++SM+++                        
Sbjct: 692 FQADDSQLRPM-GRATGGVTGMKFRDGDSLLSMSVIR----------------------- 727

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           +   E   + +        ++E R Q   L  Q++ T+++ GF KRT   ++R+ +R G 
Sbjct: 728 AAQVEAEEAAEASGESVEEMAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGI 787

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE-IRIASRATKGVVIFS 884
           GIRA  ++  +  G LV  F V D D+I+ ++  G ++R P++E  R   R+T GV   +
Sbjct: 788 GIRAMKLANEDR-GELVGAFIVEDGDEILSITSGGQVVRSPIDENFRPTGRSTMGVKFVT 846

Query: 885 TAKDERVVSVERIRESEIVDEAESTE 910
             K + V  V R  E+   DE +  +
Sbjct: 847 PKKGDSVAVVARSVEANGDDELDELD 872



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 110/293 (37%), Gaps = 37/293 (12%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+  L  Y + R+ G         D++ +     V+    +L  S  G
Sbjct: 629 PYLVLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDELIGAEL-VNPEDHILLVSRKG 687

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN------------ 644
              + +     +  P  R    +  +    G+ + ++      +                
Sbjct: 688 QSVRFQADDSQL-RPMGRATGGVTGMKFRDGDSLLSMSVIRAAQVEAEEAAEASGESVEE 746

Query: 645 ------------NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRD--EILSVE 688
                         YV   T  G  +R ++ ++   +R   G  AMKL + D  E++   
Sbjct: 747 MAETRGQWFGLHPQYVFTITDGGFAKRTQIPEYRVQSRGGIGIRAMKLANEDRGELVGAF 806

Query: 689 TCTQENDILLTTKLGQCVRFPISA-IRVFAGRNSVGVRGISLAKGDQ--VISMAIVLHAD 745
                ++IL  T  GQ VR PI    R   GR+++GV+ ++  KGD   V++ ++  + D
Sbjct: 807 IVEDGDEILSITSGGQVVRSPIDENFRP-TGRSTMGVKFVTPKKGDSVAVVARSVEANGD 865

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            + DE     +    +     G+ +E      D++++G+ + +  +     E 
Sbjct: 866 DELDELD---ESALDEGGAEGGEVDESADAGTDATIDGSAASDVARTEGDTEP 915


>gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
 gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198]
          Length = 816

 Score =  817 bits (2109), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/888 (41%), Positives = 532/888 (59%), Gaps = 91/888 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++GV     Y K ARI G+V+GKY
Sbjct: 17  KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE RL KA+  +L D
Sbjct: 77  HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L KDTVDF PNYD + +EP VL  R PN+LVNG  GIAVGMAT+IP H + E++D  + +
Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           I + D   + L+E ++GPDFPTG +I G+ GI++AY TGRG I +R   HIEKT   R+ 
Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIFGKQGIRDAYRTGRGRIKVRAKVHIEKTKT-RDV 255

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ E+P+QVNKA ++E+I+EL R+K I  IA++RDESDR G RVVIELKR A ++++LN
Sbjct: 256 IVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAMSEIVLN 315

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY+ + +++ F + ++A+N  +P+ FTL  +L  F+  R+ VV+RRT + L KA+ RAH
Sbjct: 316 HLYKSSVMETTFGIILLAINNKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKARAH 375

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L GL IA+ ++DEV+ +IR S + E A+  LM+R                         
Sbjct: 376 ILEGLKIALDHIDEVIALIRSSQDVEIAKNALMER------------------------- 410

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LSE+Q++AILE+RL RLTGL RD I  E  SL  EI+    IL S  +L  II  EL
Sbjct: 411 -FGLSELQSKAILEMRLQRLTGLERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNEL 469

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           L +K++  +PR T I E    ++ ED I  E +VVT+SH GYVKRV L VY  Q RGGKG
Sbjct: 470 LEIKEKFSSPRCTIIEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKG 529

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           +      D+DF+   F+ +TH ++LF ++ G +Y  KV+++P     A GKA++N++ L+
Sbjct: 530 KISGNTHDDDFIQSFFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLS 589

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             E+I   +   +     ++  +VF TK+G V+R  LS++  I   G  A+ LD+ DE++
Sbjct: 590 SDEKIMATITTSDF---HDDKSLVFFTKNGIVKRTNLSEYSNIRSIGVRAINLDADDELV 646

Query: 686 SVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLH 743
           +    TQ+  ++ + T  G C+RF I+ +R   GR + GV  I    K D VI    +  
Sbjct: 647 TASIITQDVKELFVATYQGMCIRFDINDVREI-GRAARGVTAIRFKAKEDSVIGATTIRS 705

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                               +   +LTV
Sbjct: 706 ----------------------------------------------------ENDKLLTV 713

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           SE+G GK+T +  +R+ +R GKG+    ++   + G LV++  VND +  +++++  G +
Sbjct: 714 SEQGIGKQTLAGAYRLQSRGGKGVIVMKLTA--KTGKLVSIINVNDENMDLMVLTTSGKM 771

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IRV    IR A R T GV I + A  E+V       + E   E E  E
Sbjct: 772 IRVDTEAIREAGRNTSGVKIVNVA-GEKVAYASSCPKEE--KEPEDGE 816


>gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565]
 gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565]
          Length = 915

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 378/885 (42%), Positives = 539/885 (60%), Gaps = 56/885 (6%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + +H LL DL K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+V+GC+A+I+N D+ +D LM  I GPDFPTG +I GR+GI  AY TGRGSI +R  +
Sbjct: 187 LTEIVNGCLALIENGDLTIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EK+I  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KRG S +++LN LY++T +Q+ F +NMVAL+  +P+   L  IL AF+  R EVV RRT
Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQPKVMNLKEILDAFLLHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLA+A+AN+D ++ +IR S  P  A+  L+ + W   ++  +++ 
Sbjct: 367 VFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLEK 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  +L+E Q +AIL+LRL +LTGL  + I  E  SL   I 
Sbjct: 427 AGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S +RL+ +I+ ELL+V+++    RRT I     ++  ED I  ED+VVT+SH 
Sbjct: 487 ELLHILASPARLMEVIRDELLAVREQYGDERRTEISMSSAEINIEDLITPEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDFV  L + +TH ++L FS+ G VY  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRGKVYWLKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L +GERIT I+P  E +      YV FAT +G V++  LSDF
Sbjct: 607 LPEASRGARGRPIINLLPLEEGERITAILPVKEYD---AEKYVFFATANGTVKKTSLSDF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
            +   SG  A+ L   DE++ V+     N+I+L +  G+ VRF   +             
Sbjct: 664 SRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFAEGSGRADADVSDDVET 723

Query: 713 -------------------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                                    +R   GR + GVRGI L  GD+V+S+ +     A 
Sbjct: 724 DDDAGNDDDGSDNGEGTESKGTFKGVRPM-GRTAAGVRGIKLGAGDKVVSLIVPRGEGAI 782

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                      +A     +        +            +  Q     +  I+ ++  G
Sbjct: 783 LTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQ--IMLITNGG 840

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              RT   +  +  R+  G+R     +      +V +  + ++D+
Sbjct: 841 TLVRTRVAEVSVIGRNTGGVRLIRTGEDET---VVGLQRIAESDE 882



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 58/135 (42%), Gaps = 4/135 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQ 704
           ++ AT++G  +R  L+++   +R  +  + +   +   +++        + I+L T  G 
Sbjct: 782 ILTATENGYGKRTALAEYPTKSRGTQGVISIKVDERNGKVIDAIQVEDTDQIMLITNGGT 841

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GVR I   + + V+ +  +  +D D ++ +     +S     
Sbjct: 842 LVRTRVAEV-SVIGRNTGGVRLIRTGEDETVVGLQRIAESDEDENDALAVDGEVSEGTDT 900

Query: 765 ISGDTEEITSLKNDS 779
            +G          D 
Sbjct: 901 ATGTDAVDAGEAGDE 915


>gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24]
          Length = 828

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 552/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V++NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVMGIRLNENDFVVGAVVISDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V   
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8]
 gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128]
 gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8]
          Length = 826

 Score =  816 bits (2108), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/912 (39%), Positives = 552/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  + V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAISEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYESIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++  +        +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDKGDELVGAKVVDNNAKHLLIASHLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L + D V+   ++                                     
Sbjct: 686 RTTRGVRGIKLNENDFVVGAVVISDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V   
Sbjct: 752 GNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLENS 821


>gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
 gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1]
          Length = 857

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/922 (38%), Positives = 521/922 (56%), Gaps = 116/922 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M   G    K + KC
Sbjct: 3   RIEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+VMG YHPHG+++IYDAL R+AQ WSLR+ L++  GNFGS   DP AA RYTEC+
Sbjct: 63  ARVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECK 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  +L D+ ++TVDF  NYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP   
Sbjct: 123 LMPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPQ- 181

Query: 195 LGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
              V  G    +++PD   +     L+E I+GPDFP+GA+++GR GI+ AY TGRGSI +
Sbjct: 182 ---VAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVVGRKGIEEAYRTGRGSITM 238

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ +I  IAD+RDE S R G R
Sbjct: 239 RAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 297

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   ++   ++ +V  + EV+
Sbjct: 298 LVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSIDAFIRHWVTHQIEVI 357

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM           
Sbjct: 358 VRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM----------- 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G + + E+Q  AILE++L RL  L R  I  E + L  +I E  +
Sbjct: 407 ---------------GLLEIDEIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNE 451

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S SR   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT++H GYVK
Sbjct: 452 ILRSESRQRSIVSEELAAIVEKFGDDRRSKLVPFDGDMSMEDLIAEEDIVVTITHGGYVK 511

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +LFF++ G VY+ K + LP  
Sbjct: 512 RTKTEDYRSQKRGGKGVRGTKLKQDDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPDA 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG+ + N+L+    E+I  I+   + E      Y++ ATK G V++  L D+    
Sbjct: 572 GRDARGQHVANLLAFQPDEKIAQILAIRDYE---AAPYLILATKGGLVKKTALKDYDSPR 628

Query: 670 RSGKIAMKLDS---------RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
             G IA+ L            DE++  E  + E+D+LL +K  Q +RF  +   +R   G
Sbjct: 629 SGGVIAINLRETGADGADGAADELIGAELVSAEDDLLLISKKAQSIRFTATDEALRPM-G 687

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV+G+S  +GD+++SM++V                                     
Sbjct: 688 RATSGVKGMSFREGDELLSMSVVRPGT--------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                               F+ T ++ G+ KRT   ++R+  R G GI+A  + +  + 
Sbjct: 715 --------------------FVFTATDGGYAKRTPVDEYRVQGRGGLGIKAAKIVE--DR 752

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-- 896
           G+LV    V++ D+I+ ++  G +IR  VNE+R   R T GV + +  K + VV + R  
Sbjct: 753 GSLVGALVVDETDEILAITLGGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNA 812

Query: 897 --------IRESEIVDEAESTE 910
                   + E++I  + E+TE
Sbjct: 813 EAGQDADEVDENDIDIDTETTE 834


>gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           helveticus H10]
          Length = 809

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/877 (40%), Positives = 524/877 (59%), Gaps = 86/877 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++S+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K+Y K ARI GEVMGK
Sbjct: 2   MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IY A+A MAQD+S R +L++G GNFGSVDGD PAA RYTE R+ K A  +L 
Sbjct: 62  FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+T+D++ NYD +  EPVVL AR PN+L+NG  GIAVGM TNIP HNL EV+ G   
Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++ NPD     LM++I GPDFPTG +I+GR GI  AY +G+G+IV+R  ++IE     RE
Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPTGGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGRE 241

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +I+V+EIPY VNKA +++KIA+L REK I  I  +RDESD+ G R+ I+++R ASA V+L
Sbjct: 242 RIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVVL 301

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T +Q+ F +NMVA+    P   TL  +L+ ++  +++VV RRTK+ L KA  RA
Sbjct: 302 NNLFKQTQMQANFGMNMVAIVDGAPHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEARA 361

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+DE+V IIR S + + A+  L+ R                        
Sbjct: 362 HILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISR------------------------ 397

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L + Q++AIL++RL RLTGL RD +  E   L  +I +  DIL+   R+  II  E
Sbjct: 398 --FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDE 455

Query: 505 LLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           LL ++      RRT I    ++ +EDED I ++++++TV+H GY+KR+P+  ++ Q RGG
Sbjct: 456 LLDIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGG 515

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           KG  G+ ++D DF+  L   STH  +LFF++ G VY  K + +P     A+G  ++N+L 
Sbjct: 516 KGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQ 575

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L +GE++ T++  PE     ++ Y+ F TK G V+R  +S+F  I  SG IA+ L   DE
Sbjct: 576 LEKGEKVQTVINVPEGA---DDNYLFFITKMGTVKRTHVSEFSNIRNSGLIALTLRDGDE 632

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           + +V T   + +IL+ T LG  V F  + +R   GR + GVRGI+L   D V+   ++  
Sbjct: 633 LSNVLTTDGKQNILIGTHLGYAVTFNENDVRAM-GRTAAGVRGINLRDHDYVVGSGVLD- 690

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                                +  +L +
Sbjct: 691 ----------------------------------------------------ADDQVLVI 698

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           SEKG+GK T + ++ +  R GKGI+  ++++ N  G L  V  ++    I++++  G +I
Sbjct: 699 SEKGYGKHTPAAEYSVKGRGGKGIKTANITEKN--GPLAGVIVISKGKDIMVITTDGIMI 756

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           R    ++    R+T GV +     D +V S+  +   
Sbjct: 757 RFKTKDVSQTGRSTMGVRLIKVNDDSQVASLTIVPSE 793


>gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 812

 Score =  816 bits (2107), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/903 (38%), Positives = 546/903 (60%), Gaps = 92/903 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +I         I  V +  +M+  Y+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSEELID----IHGKIEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  +K + K A + G  M  YHPHG+++IYDA+ RMAQ++S+R +L+EG+GNFG++
Sbjct: 57  HELGLTPDKSFHKSANVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTL 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE ++ K +  +L DLGKDTV+FRPN+D   QEP VL +R+PN+LVNG  
Sbjct: 117 DGDPPAAYRYTEAKMNKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNLGEV+D  V +IDNPD  LD +M  I+GPDFPTGA+I+GR  IK A
Sbjct: 177 GIAVGMATSIPPHNLGEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIMGREAIKKA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++R  + IE+    + +I+VTEIPYQVNKA ++EKI +LVR+K+I  + DLR
Sbjct: 237 YETGRGKIIVRAKTEIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLR 296

Query: 301 DESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DES ++ G ++VIE +R  + +V+LN L++++SLQ ++SV ++++   +P+   L+ IL+
Sbjct: 297 DESSKKTGIKIVIETRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGEPKILNLVDILQ 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ +++EVV RRTK+ LNKA +R H++ GL IA+ N+DEV+ IIR + +    +     
Sbjct: 357 YYLKYQKEVVTRRTKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQK----- 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSEVQ  AIL++RL RL GL ++ +++E   
Sbjct: 412 -----------------------LMDRFSLSEVQATAILDMRLRRLQGLEKEKLQDEERE 448

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           LG +I     IL S  +LL IIK+E++ ++D+    RRT+I     +++ +D I  E++ 
Sbjct: 449 LGEKIAYFNSILESEEKLLSIIKEEIIEIRDKYKDVRRTQITSMPHEIDIKDTIPNEEVT 508

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++H GY+KR+P+  Y+AQ+RGGKG S +  ++EDFV  L I S H  +LF ++ G +Y
Sbjct: 509 ITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTKEEDFVEKLLITSNHEKILFITNKGKIY 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
               + +P  S  A+G  +IN+L L + E+I TI+   E+E   +N Y+V  TK G +++
Sbjct: 569 NLNAYEIPQTSRTAKGSNIINLLPLEKDEKIATIITTRENE---DNAYIVMCTKKGIIKK 625

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++S+F +  R G  A+ L   DE+++        ++ L TK G  + F  + +R   GR
Sbjct: 626 TRISEFTKSKRQGMKAINLKEDDELVNSLLTADNTNLFLVTKKGMAIMFEENTLRPM-GR 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV  + L K                                                
Sbjct: 685 TATGVIAMRLKKD----------------------------------------------- 697

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                  E    E+   ++ +L +SE G+GKRT    +++ +R+G G++   +++  + G
Sbjct: 698 ------DEIVSLEIASNDKQVLIISENGYGKRTQVSKYKVQSRAGVGVKTYKITE--KTG 749

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +     V ++D++++++  GTLIR PV EI + SR T GV +  + +++ + ++E I+ 
Sbjct: 750 NIADAKIVEESDEVMIINSDGTLIRTPVAEISLLSRDTSGVKVMRSGENDIISAIEIIQS 809

Query: 900 SEI 902
            E 
Sbjct: 810 EEE 812


>gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 809

 Score =  815 bits (2106), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/891 (39%), Positives = 555/891 (62%), Gaps = 86/891 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  +E E GI  V I+ +M++SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+GM ++ +
Sbjct: 1   MTDTKEFENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K AR+ G+VMGKYHPHG+++IY+A  R+AQD+++R  L++GQGNFG++DGD  
Sbjct: 61  VSGGSYKKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K A  +L D+ KDTV+F PN+D   +EP +L +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEVKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+P HN+ EV+DG V  ID+ DI +  L E+I+GPDFPTGA+I+GR GI  AY TGR
Sbjct: 181 MATNMPPHNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIMGRDGINKAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R V+ I +    REQI++TE+PYQVNK+A++ KIAEL ++K I  I+ + D S++
Sbjct: 241 GKITVRAVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VI+LK+ A+A+V+LN+LY+ T LQ  + +  +AL   +P+   L  +++ +V  +
Sbjct: 301 RGIRIVIDLKKDANANVVLNKLYKETQLQITYGIINLALVNGRPQILNLKELIRYYVDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RRT++ LNKA  RAH++ GL IA+ N+D V++IIR S + +    +         
Sbjct: 361 VEVITRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKF-------- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                             D    L+++Q++AIL++RL RLTGL R+ ++NE + L  +IK
Sbjct: 413 ------------------DREFSLTQIQSQAILDMRLKRLTGLEREKLQNEYDKLLEDIK 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL +   L+ +IK ELL +KD+    RRT I     D++ ED I  ED+++T++  
Sbjct: 455 RFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVIITLTQF 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+P   Y+ Q+RGG+G + +  +++DFV +LF+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G A++N+L+L++GE+IT+++   E +    + Y++  T+ G +++    +F
Sbjct: 575 VPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFD---PDHYLLMVTEKGLIKKTSNKEF 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I ++G I +KL   D+++SV     + +I+L TK G+ +RF    +R   GRN++GV+
Sbjct: 632 KNIRQNGLIGIKLRDDDKLISVHLVRGDEEIILVTKEGKSIRFSTDELRD-QGRNTMGVK 690

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L + D ++S  IV                                            
Sbjct: 691 SMNLDEDDTIVSSDIVGDG----------------------------------------- 709

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++LTVSE GFGK T   ++R  NR GKGI    +S+  + G + A  
Sbjct: 710 ------------NYLLTVSENGFGKLTELKEYRPQNRGGKGIFTYKISE--KTGKVSAAS 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            VN +D I+L++D G +IR+ +++I + SR T GV + +   D ++V++ +
Sbjct: 756 VVNKSDDIMLIADSGIIIRLLIDDISVTSRNTMGVKLMNLN-DSKIVAIAK 805



 Score =  124 bits (312), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 102/267 (38%), Gaps = 61/267 (22%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
              ++       ++  T+ G ++R     +    R   G  A+     D +  +   +  
Sbjct: 496 IDIEDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKELFVTSTH 555

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  T  G+  R     +   AGRN+ G   V  ++L KG+++ S+  V         
Sbjct: 556 DRLLFFTNKGKVYRLKAFEV-PEAGRNAKGTAVVNLLNLDKGEKITSVINV--------- 605

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                    E    + ++L V+EKG  K
Sbjct: 606 -----------------------------------------EEFDPDHYLLMVTEKGLIK 624

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +TS+ +F   N    G+    +   ++   L++V  V  +++IILV+ +G  IR   +E+
Sbjct: 625 KTSNKEF--KNIRQNGLIGIKLRDDDK---LISVHLVRGDEEIILVTKEGKSIRFSTDEL 679

Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897
           R   R T GV   +  +D+ +VS + +
Sbjct: 680 RDQGRNTMGVKSMNLDEDDTIVSSDIV 706



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 75/166 (45%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L     + E +     +    +    + ++       + ++ + S+   +++  +E  I
Sbjct: 449 LLEDIKRFKEILENNHVLMELIKTELLEIKDKYGDLRRTVIKSSESDIDIEDIIKEEDVI 508

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+++ G+ KR     ++   R G+GI A    + + +  L   F  + +D+++  ++KG
Sbjct: 509 ITLTQFGYIKRMPEGTYKPQKRGGRGITALTQKEDDFVKEL---FVTSTHDRLLFFTNKG 565

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            + R+   E+  A R  KG   V + +  K E++ SV  + E +  
Sbjct: 566 KVYRLKAFEVPEAGRNAKGTAVVNLLNLDKGEKITSVINVEEFDPD 611


>gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
 gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum
           SI]
          Length = 808

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/837 (42%), Positives = 512/837 (61%), Gaps = 35/837 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I +EM++SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M  +G+  ++ + K 
Sbjct: 7   KVIPIDINEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEV+ KYHPHG+ A+YDAL R+AQD++ R  L++G GNFGSVDGD  AA RYTE R
Sbjct: 67  AYIVGEVLAKYHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEAR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +    +L D+ K+TV+F PNYDG   EP VL AR PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MARITLEMLADIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+DG + +IDNPD ++  LM +I+GPDFPTG  I+GR GI +AY TGRGSI +R  +
Sbjct: 187 LGEVIDGVIMLIDNPDANIRDLMSVIKGPDFPTGGKIMGREGIWDAYRTGRGSIKVRAQA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G R  IVV+EIPYQVNKA ++EKIAELV++K+I  I+DLRDESDR+G R+VIEL
Sbjct: 247 SIEKIGGGRHSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R A+  V+LNQLY++T +Q  F V M+AL   +P    L  +L  ++  +++VVVRRT+
Sbjct: 307 RRDANPQVVLNQLYKHTQMQDSFGVIMLALVEGEPRVLNLKEVLFYYLQHQKDVVVRRTR 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LN+A  RAH++ GL IA+A+LDEV++ IR S  PE AR+ LM++              
Sbjct: 367 FELNRAEARAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEK-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E Q  AI+E+RL +LTGL R+ +  E   L  +I     +L   
Sbjct: 413 ------------FGLTEKQAEAIVEMRLRQLTGLEREKLEQEYRELVEKIAYLRSVLDDE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++LGIIK ELL+VK +   PRRT I       E+ED I  ED+V+T++  GY+KR+PL 
Sbjct: 461 RKVLGIIKDELLAVKKKFADPRRTAITSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLD 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G + +  ++EDFV  LFI +TH   LFF++ G VY+ KV  +P    QA+
Sbjct: 521 TYRSQRRGGRGVTAMGTKEEDFVRHLFITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAK 580

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A++N+L +   E+ITT++P  E +      Y+  ATK G V++  L+++    R G I
Sbjct: 581 GTAIVNLLYIGSEEKITTVIPVREFD---PAQYLFMATKRGIVKKTPLNEYDTSRRDGII 637

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+ L+  D ++ V+      +I+L T+ G  +RF    +R   GR + GV+GI+L   D+
Sbjct: 638 AISLNEGDHLVDVKLTGGREEIILATRGGLAIRFLEEEVRP-TGRVTQGVKGINLVGDDE 696

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ M +    +             +  R               +             +  
Sbjct: 697 VVGMEVARPDEFLLSVTANGFGKRT--RLSEYRAQARGGKGIINIKTTARNGPLVAIQAV 754

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             E+ ++ +S +G   R  + D  +  R+ +G+    +   +   +LVA   V   +
Sbjct: 755 KGEEEVMMISAEGIIIRLKAQDIPVMGRATQGVTLMRL---DRGDSLVAAAKVETEE 808



 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 25/46 (54%)

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            + + D +I ++ +G + R+P++  R   R  +GV    T +++ V
Sbjct: 498 LIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVTAMGTKEEDFV 543


>gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99]
 gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A
 gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
          Length = 828

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/912 (39%), Positives = 551/912 (60%), Gaps = 94/912 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +H+++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDHLVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D    V+ NP+ +LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ SP+PE A+  L++R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVMGIRLNENDFVVGAVVISDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           G LV+V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V   
Sbjct: 752 GNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVVYVNSC 809

Query: 898 RESEIVDEAEST 909
            + E  +  E++
Sbjct: 810 PKEEEPENLETS 821


>gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 822

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/846 (42%), Positives = 520/846 (61%), Gaps = 35/846 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +E+  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  ++N+L +++GE +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I+L   DQV+ M IV    +     +  Y K        +     +     N +   G +
Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKL 751

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
              +       E+ I+ ++  G   R          R+ +G+R   +    E+  +    
Sbjct: 752 VAVKSV---TGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQ 808

Query: 846 PVNDND 851
              + D
Sbjct: 809 KDEEED 814


>gi|227502251|ref|ZP_03932300.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
 gi|227077075|gb|EEI15038.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium accolens ATCC
           49725]
          Length = 851

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/915 (36%), Positives = 524/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+      +++NP    D  L A ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE++   R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L RL  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRRLAALERQKIVD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +   IL+   R   I+  EL ++ ++    RRT I+    ++ DED I R
Sbjct: 450 ELAEIEEEIADLKHILAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITATGYAKRTKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     E   +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPESGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ+++M++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLAMSVVHDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT+  ++    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    ++ +D+I  ++  G +IR  VN+IR +SRAT GV +   A D  +++
Sbjct: 753 P--KRGKLIGAISIDKDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLA 810

Query: 894 VERIRESEIVDEAES 908
           ++R  E +  ++A++
Sbjct: 811 IDRNVEEDGEEDAQA 825



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 13/251 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     + + + D +    +VS    +L
Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +          P  R  A +  +     +++  +          +  +++ 
Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLAMSVV------HDGEFLLV 721

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R G   M       R +++   +  ++++I   T  G  +R
Sbjct: 722 ATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAGGVIR 781

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ IR  + R ++GVR + LA   +++++   +  D + D +       +        
Sbjct: 782 TEVNQIRP-SSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840

Query: 768 DTEEITSLKND 778
                 S   +
Sbjct: 841 HKGSDASKDEE 851


>gi|306834808|ref|ZP_07467872.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
 gi|304569336|gb|EFM44837.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium
           accolens ATCC 49726]
          Length = 851

 Score =  815 bits (2105), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/915 (36%), Positives = 524/915 (57%), Gaps = 97/915 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++    +++    I  + I +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDN----NDDLFDRIFPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS 
Sbjct: 57  FDSGYRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+      +++NP    D  L A ME ++GPDFPT  +I+G  G
Sbjct: 177 GIAVGMATNIPPHNLNELASAIYWLLENPDADEDAALAACMERVKGPDFPTAGLIVGDQG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE++   R+ IV+TE+P+QVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEESGS-RQTIVITELPFQVNPDNLISNIAESVANGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+V+ LKR A A V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 296 SKIEDESSDRVGMRIVVTLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  +VA + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLSNYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L +                           + + ++Q  AIL ++L RL  L R  I +
Sbjct: 416 GLKE--------------------------LLDVDDIQADAILAMQLRRLAALERQKIVD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  +  EI +   IL+   R   I+  EL ++ ++    RRT I+    ++ DED I R
Sbjct: 450 ELAEIEEEIADLKHILAHEERQRQIVHDELEAIVEKYGDERRTEILPASGEVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y++Q+RGGKG  G  ++ +D V + F+ STH  +LFF++ 
Sbjct: 510 ENVVVTITATGYAKRTKVDTYKSQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     ARG+ + N+L     E+I  ++     E   +  Y+V AT+ G
Sbjct: 570 GRVYRLKAYELPESGRAARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATQQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++  +  ++ +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDALIGAQLVSEGDDILLTSEQGQAIRFTADDDQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ+++M++V   +                            
Sbjct: 687 RPM-GRATAGVKGMRFRGDDQLLAMSVVHDGE---------------------------- 717

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+L  +  G+GKRT+  ++    R G G+     +
Sbjct: 718 -------------------------FLLVATSGGYGKRTAIEEYTPQGRGGLGVMTFKYT 752

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
              + G L+    ++ +D+I  ++  G +IR  VN+IR +SRAT GV +   A D  +++
Sbjct: 753 P--KRGKLIGAISIDKDDEIFAITSAGGVIRTEVNQIRPSSRATMGVRLVDLADDVELLA 810

Query: 894 VERIRESEIVDEAES 908
           ++R  E +  ++A++
Sbjct: 811 IDRNVEEDGEEDAQA 825



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 13/251 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     + + + D +    +VS    +L
Sbjct: 611 QSYEDAPYLVLATQQGRVKKSRLTDYESARSAG--LIAINLNEGDALIGAQLVSEGDDIL 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +          P  R  A +  +     +++  +          +  +++ 
Sbjct: 669 LTSEQGQAIRFTADD-DQLRPMGRATAGVKGMRFRGDDQLLAMSVV------HDGEFLLV 721

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R G   M       R +++   +  ++++I   T  G  +R
Sbjct: 722 ATSGGYGKRTAIEEYTPQGRGGLGVMTFKYTPKRGKLIGAISIDKDDEIFAITSAGGVIR 781

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ IR  + R ++GVR + LA   +++++   +  D + D +       +        
Sbjct: 782 TEVNQIRP-SSRATMGVRLVDLADDVELLAIDRNVEEDGEEDAQAVAKGEKTVDEVQQEH 840

Query: 768 DTEEITSLKND 778
                 S   +
Sbjct: 841 HKVSDASKDEE 851


>gi|296453193|ref|YP_003660336.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JDM301]
 gi|296182624|gb|ADG99505.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. longum JDM301]
          Length = 883

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/918 (38%), Positives = 513/918 (55%), Gaps = 97/918 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +       +  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M 
Sbjct: 26  ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS  
Sbjct: 86  DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  G
Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HN+ EV DG    +D+PD   + L+     II+GPDFPTGA ILG  GI
Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRG I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IA
Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L  
Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            ++ +V  + +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  
Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                          G + + +VQ  AIL ++L  LT + RD I  E
Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  +I + +DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E
Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVTV+H G++KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G
Sbjct: 539 NVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G 
Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDETIQTVLSIPNYEV---AKYLVLATRSGK 655

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710
           V++  L+++    + G IA++L +       DE++    C  E+DI+L +KLG  ++F  
Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV+G+     D +++M +V                           
Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++ +  V+ +GF KRT+  ++R+  R+G GI+
Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A  + +    GALV    V+++DQ++ +   G +IR  V+E++   R T+GV      K 
Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841

Query: 889 ERVVSVERIRESEIVDEA 906
           + ++S+ R  E +  +++
Sbjct: 842 DTILSIARNEEKDEPEDS 859


>gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
 gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328]
          Length = 806

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/892 (39%), Positives = 549/892 (61%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE++   R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R
Sbjct: 242 LRAEARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V   +                                            
Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    F+  +SE G+GK+T   ++   NR GKGIR   ++K  + G +     +  
Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
           +D+I+L+S +  +IR+    I   SR T GV++ +T K  + +V+V +  E 
Sbjct: 755 DDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERIC 753
             T  G   R    A +V   R   GV  + +  GD +  M                ++ 
Sbjct: 504 TITNKGYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVY 562

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K         +     I +L    + E         + K  +QFI+ +++KG  K+TS
Sbjct: 563 SLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTS 622

Query: 814 SYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              +   R +     GI A    +      L+ V  V  N+++I+V+ KG  ++  V+++
Sbjct: 623 LSLYENIRKT-----GIIAIKFDEG---DELIDVKLVEKNEEVIIVTKKGMSLQFNVDQL 674

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           R  SR   GV   +  KD+ V+S + ++++E
Sbjct: 675 RDLSRNAIGVKAITLNKDDEVISFDLVKDNE 705


>gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
 gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180]
          Length = 833

 Score =  815 bits (2104), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/913 (39%), Positives = 551/913 (60%), Gaps = 91/913 (9%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++ +  +   E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MQDNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS
Sbjct: 61  MHELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG 
Sbjct: 121 IDGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP H + E++D  V V++NP+ +LD ++E ++GPDFPTG +I G+ GI  
Sbjct: 181 NGIAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIVE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++
Sbjct: 241 AYKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L 
Sbjct: 300 RDESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLC 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ SP+PE A+  LM+
Sbjct: 360 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q++AILE+RL RLTGL RD I+ E  +
Sbjct: 420 R--------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQN 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +   IL S  RL  ++K ELL VK++  +PRRT I E    ++ ED I  E MV
Sbjct: 454 LLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYESIDTEDLIANEPMV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V++SH GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y
Sbjct: 514 VSMSHKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R
Sbjct: 574 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKR 630

Query: 660 NKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFA 717
             LS+F        I A+ LD  DE++  +   +    +L+ + LG  ++FP+  +R   
Sbjct: 631 TNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI- 689

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GV GI L + D V+   ++                                    
Sbjct: 690 GRHTRGVMGIRLNENDFVVGAVVISDDGNK------------------------------ 719

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 +L+VSE G GK+T +  +R  +R GKG+    +++  +
Sbjct: 720 ----------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKITQ--K 755

Query: 838 IGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G LV V  V+D +  +++++    +IRV + +IR   R   GV + +TA  ++VV V  
Sbjct: 756 TGNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETRRNASGVKLINTA--DKVVYVNS 813

Query: 897 IRESEIVDEAEST 909
             + E  +  E++
Sbjct: 814 CPKEEEPENLETS 826


>gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
 gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260]
          Length = 816

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/902 (38%), Positives = 519/902 (57%), Gaps = 87/902 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              SS  +    +  + + +E+++SYL YA++VI+GRA+PD RDGLKPV RR+L+ M+++
Sbjct: 2   DQDSSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLEL 61

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  N+ + K AR+ GE MGKYHPHG+AAIY+ +AR++QD+SLR  L++GQGNFGS+DGD
Sbjct: 62  GLRHNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGD 121

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL      +L D+ ++TV++ PN+D S QEP+VL +R PN+LVNG  GIA
Sbjct: 122 PPAAMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIA 181

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+P HNL EV+D   A++++P I+L  LM ++ GPDFPTG VILGR GI +AY T
Sbjct: 182 VGMATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVILGRDGIVDAYKT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG +++RG + IE     R+ IV+TEIPY VNK +++E IA+  +   +  I DLRDES
Sbjct: 242 GRGKVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G RVV+EL R A  +++L QLY  T LQS F V  +AL   +P   TL  IL+ F+ 
Sbjct: 302 NREGIRVVLELHRDADPNLVLRQLYSRTQLQSTFGVINLALVDGRPRVLTLHQILQVFLD 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  VV RRT++ L KA +RAH++ GL  A+  +D+V+ +IR + +P +A+  L++    
Sbjct: 362 HRRAVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVE---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T+  SEVQ +AIL++RL RLTGL R  +  EL  L  +
Sbjct: 418 ----------------------TLGFSEVQAQAILDMRLQRLTGLERSKLEEELAQLLQD 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+    IL++ S L G+++ EL  ++   +  RRTRI + + D+  ED I   ++VV +S
Sbjct: 456 IERYRSILANPSILDGVVRGELQEIRAAYEDDRRTRIEDAVEDVSAEDLIPESEIVVVLS 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++R+PL  YR Q RGGKG  G   R ED +  + + +TH ++  F+S G V+  + 
Sbjct: 516 RDGFLRRMPLQDYRCQSRGGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP      +GK +   +SL +GER    +    D       +V F T+ G  +R  ++
Sbjct: 576 FTLPE-PKTGKGKHVSTFVSLEEGER----VVTLRDSRLDGARFVFFVTQRGVAKRLPVT 630

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +   INR+G+  + L   D I  V     E+++LLTT  GQ +R P    R   GR + G
Sbjct: 631 ELDGINRAGRRILGLAPEDTIARVRFTGGEDELLLTTAQGQTLRVPEGEFRP-QGRTAHG 689

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ L +GD V+   ++                                          
Sbjct: 690 VRGVRLDEGDLVVGCDVIEPG--------------------------------------- 710

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + +L +SE+G GKRT   +F   +R G G+RA  +      G LV 
Sbjct: 711 --------------RQVLFISERGIGKRTPYDEFTAHHRGGGGVRAMKLVDR--TGDLVG 754

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            + V ++D+++++S KG ++R+   EI    RA  G  +    + + V  V  IR +++ 
Sbjct: 755 AWGVREDDELVVISAKGRMVRLLAGEISSLGRAATGYKVVRLDEGDEVADVSIIRCADLE 814

Query: 904 DE 905
           +E
Sbjct: 815 EE 816


>gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3]
          Length = 806

 Score =  814 bits (2103), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/892 (39%), Positives = 549/892 (61%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKINIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG++AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE++   R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R
Sbjct: 242 LRAEARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V   +                                            
Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    F+  +SE G+GK+T   ++   NR GKGIR   ++K  + G +     + +
Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKN 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
            D+I+L+S +  +IR+    I   SR T GV++ +T K  + +V+V +  E 
Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRNTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERIC 753
             T  G   R    A +V   R   GV  + +  GD +  M                ++ 
Sbjct: 504 TITNKGYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVY 562

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K         +     I +L    + E         + K  +QFI+ +++KG  K+TS
Sbjct: 563 SLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTS 622

Query: 814 SYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              +   R +     GI A    +      L+ V  V  N+++I+V+ KG  ++  V+++
Sbjct: 623 LSLYENIRKT-----GIIAIKFDEG---DELIDVKLVEKNEEVIIVTKKGMSLQFNVDQL 674

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           R  SR   GV   +  KD+ V+S + ++++E
Sbjct: 675 RDLSRNAIGVKAITLNKDDEVISFDLVKDNE 705


>gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 935

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/893 (41%), Positives = 538/893 (60%), Gaps = 55/893 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 183 PPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 243 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 363 VTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVE 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 423 AMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL++  RL+ +I++EL  VK +    RRT I+E  LD+   D I  E+ VV
Sbjct: 483 LTQIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGG+G++   +++ED+V  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------------------- 637
            K + +P  S  +RG+ L+N+L L++GERIT ++                          
Sbjct: 603 LKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVI 662

Query: 638 --------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                         +++      Y+  AT  G V++  L  F +   SG IA+KL+  D 
Sbjct: 663 EHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 722

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R+  GRN+ GVRG+ L +G ++ISM I   
Sbjct: 723 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISMLIPEP 781

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                   +      +A              +   ++          Q L+ +E  I+ +
Sbjct: 782 GAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEE--IMLI 839

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854
           S++G   RT   +     R+ +G+    +SK      LV +  V +   ++++
Sbjct: 840 SDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGE---HLVGLERVQEPSEEEVL 889



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 95/262 (36%), Gaps = 15/262 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + + + D +    +      V+ FS  G 
Sbjct: 686 YIFMATAKGTVKKTPLVQFSRPRTSG--LIALKLEEGDTLIAAAVTDGAQEVMMFSDGGK 743

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K  ++ I    ARG   +  + L +G+RI +++             ++ A+  G  
Sbjct: 744 VIRFKESKVRIMGRNARG---VRGMRLPEGQRIISML------IPEPGAQILTASVRGYG 794

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + +F +  R G+  + + + +     +      +  +I+L +  G  VR  +  + 
Sbjct: 795 KRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVDEVS 854

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I L+KG+ ++ +  V     +                          S
Sbjct: 855 SL-GRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEALLDDDALEKEMPVISTEPS 913

Query: 775 LKNDSSVEGNISEERCQELKLK 796
                   G++S +        
Sbjct: 914 EDELLGGGGDVSPDVVPTDDED 935


>gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 814

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/895 (40%), Positives = 532/895 (59%), Gaps = 95/895 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
               ++I DEM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+ +N  Y K 
Sbjct: 5   NTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQ++SLR +L++GQGNFGSVDGDPPAA RYTE R
Sbjct: 65  ARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEAR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL D+ KDTV+F PN+D S +EP VL +R P +L+NG  GIAVGMATNIP HN
Sbjct: 125 LTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ D    +IDNP+  L+ LM+ ++GPDFPTG +ILGR GIK+AYATG G +V+R  +
Sbjct: 185 LTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARA 244

Query: 255 HIEK--TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           H+     +G R QI+++E+PYQVNKA ++++IA L RE++I  IA++RDESDRQG RVVI
Sbjct: 245 HVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR      ILN LY++T+LQ+ F VNM+AL   +P    L   L  +VAFR+E++ RR
Sbjct: 305 ELKRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +K+ L  AR RAH+L GL IA+ NLD ++ +IR + N +TARRELM R            
Sbjct: 365 SKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSR------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS++Q +AIL+L+L RL  L R  I  E   +  +I    D+L+
Sbjct: 413 --------------FELSQLQAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  ++L ++K +L  VK      RRT I    +++  +ED I  + MVVT++  G++KRV
Sbjct: 459 NPRKVLSLVKDDLAEVKARYGDARRTEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-IGS 610
           P  VYR Q R G+G+S +  R+ D V  + +  TH SVL F++ G ++  K   +P    
Sbjct: 519 PTEVYRLQHRAGRGKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLL 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G A+IN++ L + ERIT+++     +       ++ AT  G  +R KLSDF  +  
Sbjct: 579 RTAKGIAIINLVPLAENERITSMIAVSRFD---EETSLIMATSGGECKRTKLSDFAAVRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG +AM L   DE++       + +I+L T  G+ + FP++ +RV   R S GVRGI+L 
Sbjct: 636 SGLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHFPVADLRVSQ-RASGGVRGITLE 694

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V  + +                                                  
Sbjct: 695 GDDRVAGLDVARPG---------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   F+L V+  G+GK T+  ++ +  R+G G+    V  +++ G + A   V+  
Sbjct: 709 -------HFVLVVTTGGYGKLTAVEEYPLQRRAGSGVLTFKV--VDKTGKVAAGKVVDRE 759

Query: 851 DQIILVSDKGTLIRVPV------NEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            Q+++ + +G +IR PV        I +  R+T+GV++    +++RVV+   + E
Sbjct: 760 HQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVIRPDENDRVVNFATMVE 814



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 17/284 (5%)

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDE 683
              +   ++ F E++   +   VV  T+ G ++R     +   +R   GK  +K    D 
Sbjct: 484 TEIQSQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGRGKSIIKTREADS 543

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAI 740
           +  +      + +LL T  G+        I     R + G+  I+L   A+ +++ SM  
Sbjct: 544 VRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSMIA 603

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           V   D   +  +         +R    D   + S    +       E     +   ++ I
Sbjct: 604 VSRFD--EETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIGAVIAGADENI 661

Query: 801 LTVSEKGFGKRT---SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + ++  G   R+      D R+S R+  G+R   +        +  +        +++V+
Sbjct: 662 ILITHNG---RSIHFPVADLRVSQRASGGVRGITL---EGDDRVAGLDVARPGHFVLVVT 715

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIRES 900
             G      V E  +  RA  GV+ F    K  +V + + +   
Sbjct: 716 TGGYGKLTAVEEYPLQRRAGSGVLTFKVVDKTGKVAAGKVVDRE 759


>gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
 gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39]
          Length = 848

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/848 (44%), Positives = 528/848 (62%), Gaps = 39/848 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                       +R   GR + GVRG+ LA GDQV+S+ IV   + D             
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKRT 780

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                         + +    E N S     ++   ++F + ++  G   RT   +    
Sbjct: 781 SLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQV 839

Query: 821 NRSGKGIR 828
            R+ +G+ 
Sbjct: 840 GRNTQGVT 847



 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 96/286 (33%), Gaps = 87/286 (30%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   LSD+    R   GK A K+   D I  +      ++ILL +  G+ 
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            R  +  +   A R + G   V  + L + +++ ++  V                     
Sbjct: 599 YRMKVYQL-PLASRTARGKPIVNLLPLEENERITAILPVTE------------------- 638

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                            +++FI   +  G  K+TS   F  +N 
Sbjct: 639 -------------------------------FSEDKFIFMATGDGTVKKTSLDQF--ANV 665

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP-------VNE------ 869
              G+ A ++       +L+ V   +   +I+L S  G ++R         V+E      
Sbjct: 666 RANGLIALNLRD---EDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 870 ------------IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                       +R   R   GV     A  ++VVS+  + ++E  
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKTEGD 767


>gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7]
          Length = 849

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/907 (40%), Positives = 537/907 (59%), Gaps = 90/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V + + M+  Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   DDKIFDKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGS+DGD  AA 
Sbjct: 62  KPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  ++ D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E +DG + +ID     N +  ++ LMEII+GPDFPTGA+ILG+ GI  AY T
Sbjct: 182 NIPPHNLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMILGKNGINQAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R V+ IE     R +IV TE+PY VNKA ++EKIAELV++KRI  I+DLRDES
Sbjct: 242 GRGKLKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G RVVIELK+ A+ +V+LNQLY++T LQ  + V M+AL   +P    L  +L+ ++ 
Sbjct: 302 SREGLRVVIELKKDANPNVVLNQLYKHTQLQDTYGVIMLALVNNQPMILNLKQMLELYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT++ LNKA +RAH+L GL IA+ ++DEV+ IIR S N   A+  LM+    
Sbjct: 362 HQEEVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLME---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T  L+EVQ +AI+++RL  LTGL R+ I NE N L   
Sbjct: 418 ----------------------TFGLTEVQAQAIVDMRLRALTGLEREKIENEYNELMKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+    LLG+I++E+  ++D+    R+T +     ++  ED I RE+ V+ ++
Sbjct: 456 IGELKAILADEKLLLGVIREEIKLIRDKYGDDRKTSLGVDDDEITVEDLIKRENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGG+G  G+   DED +T+L + +TH  +LFF++ G V++ K 
Sbjct: 516 QLGYIKRMTMDNFRSQNRGGRGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG ALIN+L L  GE++T  +P  + E   N+ Y+  ATK+G V++  + 
Sbjct: 576 YEIPEASRIARGTALINLLQLEPGEKVTATIPLEKYE---NDKYLFMATKNGMVKKTSIM 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++I + ++G +A+ L   DE++ V+   + + I L ++ G  + F    +R   GR S+G
Sbjct: 633 EYINVRKTGLLAIGLREDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRA-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+ L   D ++ M +    +A        +                            
Sbjct: 692 VIGMDLDADDLIVGMQVSSQGEAVLIVSEKGLGKR------------------------- 726

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                                       T   +F + NR GKG++   ++  ++ G +V 
Sbjct: 727 ----------------------------TMLEEFNVQNRGGKGLKCYKIT--DKTGLVVG 756

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  VN  D++++++  G +IR+PV  I I  R T GV +    +   V S+ +IRE    
Sbjct: 757 VKCVNAEDELMIITTGGIIIRMPVEGISILKRITSGVKLIQLDEGSVVASIAKIREDMKD 816

Query: 904 DEAESTE 910
           DE  S E
Sbjct: 817 DEETSDE 823


>gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
 gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603]
          Length = 871

 Score =  814 bits (2102), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/929 (38%), Positives = 521/929 (56%), Gaps = 105/929 (11%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           MTE    +              I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVH
Sbjct: 1   MTEDQNMAQGNAADVSGVVHGNIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+++ M   G   ++ Y KC+R+ G+VMGKYHPHG+ AIYD L R+ QDW+LR  L  G
Sbjct: 61  RRVIYAMYDGGYRPDRAYSKCSRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   DP AA RYTE R+ + A  ++ D+ K+TVDF+ NYDG  QEP VL AR+PN
Sbjct: 121 QGNFGSPGNDPAAAPRYTETRMAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV +G    + NPD   +     L+  I+GPDFPTGA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAEGVAWYLANPDASREELREALIARIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR+GI +AY TGRGSI +R V ++E+    R+ +VVTE+PYQVN   +  KIA+L +
Sbjct: 241 TILGRSGIDDAYRTGRGSITMRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLALKIADLTK 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           E RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ  FS NM+AL    
Sbjct: 300 EGRIQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   +  +V  + +V+ RRT +LL +A D+ H+L G   A+ NLDEV+ +IR SP
Sbjct: 360 PRTLSIDAFIHHWVNHQLDVISRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L++                           + + ++Q  AIL L+L RL  L
Sbjct: 420 TVEEARGGLIE--------------------------LLGIDDIQATAILNLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I +E + L  +I +  DIL+S  R   I+  EL  + D     RR+ I+    ++ 
Sbjct: 454 ERQKIIDEHDDLERQILDYRDILASPQRQRDIVGSELSEIVDRYGDERRSTILPYGGEVS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GYVKR     YRAQ+RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIAEEDVVVTITRGGYVKRTRSDNYRAQKRGGKGVRGTQLREDDIVDHFFVTTTHHW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++LG VY+ K + LP GS +++G+ + N+L+   GE I  ++     E   ++ Y+
Sbjct: 574 LLFFTNLGRVYRAKAYELPEGSRESKGQHVANLLAFQPGESIAQVLALRNYE---DHEYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++     +G IA+KL        DE++       +ND++L ++LG
Sbjct: 631 VLATRSGLVKKTRLSEYDTNRSAGLIAIKLREYDDGSVDELVKAMPVNADNDLILISRLG 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF      +R   GR + GV G+  A GD+++S  +V                    
Sbjct: 691 QSIRFTADDASLRPM-GRGTSGVIGMKFADGDELLSADVVKDDAD--------------- 734

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +  V++ GF KRT+  ++R+  
Sbjct: 735 --------------------------------------LFVVTDGGFAKRTAISEYRVQG 756

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G+G++   + +  + G LV       +D+++++ +KG ++R  V E+    R T+GV 
Sbjct: 757 RGGQGVKVAKLVE--DRGHLVGALITEQDDEVLVIMEKGKIVRSAVAEVNRTGRNTQGVT 814

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                K +R+++V R  E  + DE ++ E
Sbjct: 815 FAKPDKKDRIIAVARNVERSLNDEDDTAE 843



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 92/254 (36%), Gaps = 14/254 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST---HTSV 589
               + +V  +  G VK+  LS Y   R  G     +   D+  V +L           +
Sbjct: 624 YEDHEYLVLATRSGLVKKTRLSEYDTNRSAGLIAIKLREYDDGSVDELVKAMPVNADNDL 683

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +  S LG   +       +  P  RG + +  +    G+ + +           ++  + 
Sbjct: 684 ILISRLGQSIRFTADDASL-RPMGRGTSGVIGMKFADGDELLSADVVK------DDADLF 736

Query: 650 FATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCV 706
             T  G  +R  +S++    R   G    KL      ++      Q++++L+  + G+ V
Sbjct: 737 VVTDGGFAKRTAISEYRVQGRGGQGVKVAKLVEDRGHLVGALITEQDDEVLVIMEKGKIV 796

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  ++ +    GRN+ GV      K D++I++A  +    + ++        +      +
Sbjct: 797 RSAVAEVN-RTGRNTQGVTFAKPDKKDRIIAVARNVERSLNDEDDTAEDGDENDVPLPDA 855

Query: 767 GDTEEITSLKNDSS 780
              +  +    + +
Sbjct: 856 AVHDTPSDATAEEN 869


>gi|213690935|ref|YP_002321521.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|213522396|gb|ACJ51143.1| DNA gyrase, A subunit [Bifidobacterium longum subsp. infantis ATCC
           15697]
 gi|320456981|dbj|BAJ67602.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis ATCC
           15697]
          Length = 883

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/921 (37%), Positives = 512/921 (55%), Gaps = 97/921 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +       E  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M 
Sbjct: 26  ADTTDYGLMESGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS  
Sbjct: 86  DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  G
Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HN+ EV DG    +D+PD   + L+     II+GPDFPTGA ILG  GI
Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRG I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IA
Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L  
Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            ++ +V  + +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  
Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+                           + + +VQ  AIL ++L  LT + RD I  E
Sbjct: 445 LME--------------------------LLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L   I + +DIL+   R   II  EL  +  +    RRTRI+    +M  ED I  E
Sbjct: 479 HEELQRRIADYIDILAKPERQRKIIGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEE 538

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVTV+H G++KR     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G
Sbjct: 539 NVVVTVTHSGFIKRTKADEYRAQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G 
Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDETIQTVLSIPNYEV---ARYLVLATRSGK 655

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710
           V++  L+++    + G IA++L +       DE++    C  ++DI+L ++LG  ++F  
Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAQDDIILVSRLGMSLKFQA 715

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV+G+     D +++M +V                           
Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRADDSLLAMDVVP-------------------------- 748

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++ +  V+ +GF KRT+  ++R+  R+G G++
Sbjct: 749 -------------------------SDSDKDLFVVTNEGFAKRTAIGEYRLQGRNGLGVK 783

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A  + +    GALV    V+++DQ++ +   G +IR  V+E++   R T+GV      K 
Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841

Query: 889 ERVVSVERIRESEIVDEAEST 909
           + ++S+ R  E +  +E   T
Sbjct: 842 DMILSIARNEEKDEPEEDGGT 862


>gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1]
 gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5]
 gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1]
          Length = 826

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/891 (38%), Positives = 530/891 (59%), Gaps = 88/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y K 
Sbjct: 23  EVKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPYKKS 82

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R
Sbjct: 83  ARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEAR 142

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  LL D+ KDTVDF  NYD + +EP VL +R PN+L+NG  GIAVGMAT+IP H 
Sbjct: 143 MATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIPPHR 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+++  + V++NP   L  +++++ GPDFPTG +I G+ GI  AY++GRG I +R  +
Sbjct: 203 LDEIIEALIFVLENPQASLSDILDLVPGPDFPTGGIIHGKQGILEAYSSGRGRIRVRAKT 262

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+    RE I++ E+PYQ NKA ++E+I+EL R+K +  I+++RDESDR+G RVVI+L
Sbjct: 263 RLERIE-GRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRVVIDL 321

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A+A ++LNQLY+ + ++S FS+ ++A++  +P  F L+ +LK F+  R+ +V+RRT 
Sbjct: 322 KREANAQIVLNQLYKSSGMESTFSIILLAIHNKEPRIFNLLELLKLFLMHRKTIVIRRTI 381

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA+ R H+L GL +A+ N + V+ +I+ S +  +A+  L+Q               
Sbjct: 382 YELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQ--------------- 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS+ Q++AILE+RL RLTGL ++ I  E   L   I+E   IL   
Sbjct: 427 -----------AHQLSQEQSKAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHA 475

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +L  +IK+ELL +K++  T R+T+I E    + DED I REDMVVT+SH GY KR+PL 
Sbjct: 476 DKLNHLIKEELLEIKEKFSTARKTQIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLK 535

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           +Y  Q+RGGKG+      ++DF+   F  +TH  +LF +  G +Y  KV+++P     A 
Sbjct: 536 IYEQQKRGGKGKISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAI 595

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKAL+N++ +  GE+I  I+  P+      + ++VF TK G ++R +LS F ++   G  
Sbjct: 596 GKALVNLIDIEPGEKICAILSTPDFS---PDKFLVFFTKKGMIKRTQLSAFGRVRI-GVR 651

Query: 675 AMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +++L   D +++ +    +  ++ + T  G C+RF  S +R   GR ++GV G+ L +GD
Sbjct: 652 SIELKEGDALVTAQILEHENQELFMATAKGMCIRFKASGVRDM-GRTAMGVIGMRLKEGD 710

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI  +I L                                                   
Sbjct: 711 FVIGASIALS-------------------------------------------------- 720

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              +  +LT+S KG GK+T    +R+ NR G G+    ++   + G LVA+  V++   +
Sbjct: 721 --DQHKLLTISSKGMGKQTLIGAYRLQNRGGLGVIGAKLTP--KTGNLVAIVHVDEGQDL 776

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +L++  G +IR+P+  IR   R   GV + S  + + VV      +   V+
Sbjct: 777 MLLTKNGKMIRMPMESIRETGRHASGVKLVSV-EGDGVVYANTCPKENEVE 826


>gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
 gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501]
          Length = 954

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/893 (41%), Positives = 538/893 (60%), Gaps = 55/893 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK 
Sbjct: 22  ELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKP 81

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 82  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 141

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 142 TEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 201

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDN DI +D LM+ I GPDFPT  +I GR GI  AY TGRG I I
Sbjct: 202 PPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGIINGRAGIIEAYRTGRGRIYI 261

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  + IE       R+QIV+TE+PYQ+NKA ++EKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 262 RARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGM 321

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 322 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQPRTLNLKELLEAFVRHRREV 381

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT Y L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L+  +W +S ++
Sbjct: 382 VTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVE 441

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             DG  +LS  Q +AIL+LRL RLTGL  + +  E   +
Sbjct: 442 AMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEI 501

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL++  RL+ +I++EL  VK +    RRT I+E  LD+   D I  E+ VV
Sbjct: 502 LTQIGELIRILTNPVRLMEVIREELEGVKRDFGDARRTEILESRLDLTLADLITEEERVV 561

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+ Y+AQRRGG+G++   +++ED+V  L + ++HT++L FSS G VY 
Sbjct: 562 TISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKVYW 621

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP----------------------- 637
            K + +P  S  +RG+ L+N+L L++GERIT ++                          
Sbjct: 622 LKTYEIPEASRTSRGRPLVNLLPLDEGERITAMLQVDLEALRKQAAEGDEELDDAEGLVI 681

Query: 638 --------------EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
                         +++      Y+  AT  G V++  L  F +   SG IA+KL+  D 
Sbjct: 682 EHDDVDDVEGDDDSDEKDEPTGAYIFMATAKGTVKKTPLVQFSRPRTSGLIALKLEEGDT 741

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +++        ++++ +  G+ +RF  S +R+  GRN+ GVRG+ L +G ++ISM I   
Sbjct: 742 LIAAAVTDGAQEVMMFSDGGKVIRFKESKVRIM-GRNARGVRGMRLPEGQRIISMLIPEP 800

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                   +      +A              +   ++          Q L+ +E  I+ +
Sbjct: 801 DAQILTASVRGYGKRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEE--IMLI 858

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854
           S++G   RT   +     R+ +G+    +SK      LV +  V +   ++++
Sbjct: 859 SDQGTLVRTRVDEVSSLGRNTQGVTLIKLSKGE---HLVGLERVQEPSEEEVL 908



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 96/262 (36%), Gaps = 15/262 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     + + + D +    +      V+ FS  G 
Sbjct: 705 YIFMATAKGTVKKTPLVQFSRPRTSG--LIALKLEEGDTLIAAAVTDGAQEVMMFSDGGK 762

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K  ++ I    ARG   +  + L +G+RI +++          +  ++ A+  G  
Sbjct: 763 VIRFKESKVRIMGRNARG---VRGMRLPEGQRIISML------IPEPDAQILTASVRGYG 813

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + +F +  R G+  + + + +     +      +  +I+L +  G  VR  +  + 
Sbjct: 814 KRTAMEEFPRRGRGGQGVIAMVTNERNGPLVGAVQVLEGEEIMLISDQGTLVRTRVDEVS 873

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I L+KG+ ++ +  V     +                          S
Sbjct: 874 SL-GRNTQGVTLIKLSKGEHLVGLERVQEPSEEEVLEDIEALLDDDALEKEMPVISTEPS 932

Query: 775 LKNDSSVEGNISEERCQELKLK 796
                   G++S +        
Sbjct: 933 EDELLGGGGDVSPDVVPTDDED 954


>gi|23335944|ref|ZP_00121175.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
 gi|189440293|ref|YP_001955374.1| DNA gyrase subunit A [Bifidobacterium longum DJO10A]
 gi|227547506|ref|ZP_03977555.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239622837|ref|ZP_04665868.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133627|ref|YP_004000966.1| gyra [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688197|ref|YP_004207931.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
 gi|322690199|ref|YP_004219769.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|189428728|gb|ACD98876.1| Type IIA topoisomerase A subunit [Bifidobacterium longum DJO10A]
 gi|227212021|gb|EEI79917.1| DNA topoisomerase (ATP-hydrolyzing) [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|239514834|gb|EEQ54701.1| DNA gyrase A subunit [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|311772885|gb|ADQ02373.1| GyrA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320455055|dbj|BAJ65677.1| DNA gyrase subunit A [Bifidobacterium longum subsp. longum JCM
           1217]
 gi|320459533|dbj|BAJ70153.1| DNA gyrase subunit A [Bifidobacterium longum subsp. infantis 157F]
          Length = 883

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/918 (37%), Positives = 512/918 (55%), Gaps = 97/918 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +       +  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M 
Sbjct: 26  ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS  
Sbjct: 86  DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  G
Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HN+ EV DG    +D+PD   + L+     II+GPDFPTGA ILG  GI
Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRG I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IA
Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L  
Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            ++ +V  + +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  
Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                          G + + +VQ  AIL ++L  LT + RD I  E
Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  +I + +DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E
Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVTV+H G++KR     YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G
Sbjct: 539 NVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G 
Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEV---AKYLVLATRSGK 655

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710
           V++  L+++    + G IA++L +       DE++    C  E+DI+L +KLG  ++F  
Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV+G+     D +++M +V                           
Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++ +  V+ +GF KRT+  ++R+  R+G GI+
Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A  + +    GALV    V+++DQ++ +   G +IR  V+E++   R T+GV      K 
Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841

Query: 889 ERVVSVERIRESEIVDEA 906
           + ++S+ R  E +  ++ 
Sbjct: 842 DTILSIARNEEKDEPEDG 859


>gi|23465217|ref|NP_695820.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
 gi|23325845|gb|AAN24456.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 883

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 512/918 (55%), Gaps = 97/918 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +       +  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M 
Sbjct: 26  ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KC+R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS  
Sbjct: 86  DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRNMLVDGQGNFGSPG 145

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  G
Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HN+ EV DG    +D+PD   + L+     II+GPDFPTGA ILG  GI
Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRG I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IA
Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L  
Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            ++ +V  + +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  
Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                          G + + +VQ  AIL ++L  LT + RD I  E
Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  +I + +DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E
Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVTV+H G++KR     YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G
Sbjct: 539 NVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP G+  ++G+ + N+L     E I T++  P  E      Y+V AT+ G 
Sbjct: 599 RVYRIKAYELPEGARDSKGQHVANLLQFAPDESIQTVLSIPNYEV---AKYLVLATRSGK 655

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710
           V++  L+++    + G IA++L +       DE++    C  E+DI+L +KLG  ++F  
Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV+G+     D +++M +V                           
Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++ +  V+ +GF KRT+  ++R+  R+G GI+
Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A  + +    GALV    V+++DQ++ +   G +IR  V+E++   R T+GV      K 
Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841

Query: 889 ERVVSVERIRESEIVDEA 906
           + ++S+ R  E +  ++ 
Sbjct: 842 DTILSIARNEEKDEPEDG 859



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 90/239 (37%), Gaps = 13/239 (5%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI----VSTHTSVLFFSSLGFV 598
           +  G VK+ PL+ Y + R+GG     ++  +     D  I     +    ++  S LG  
Sbjct: 651 TRSGKVKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMS 710

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            K +     +  P  R  A +  +     + +  +   P D    ++  +   T  G  +
Sbjct: 711 LKFQADDEQL-RPMGRQTAGVQGMKFRNDDSLLAMDVVPGD----SDKDLFVVTNEGFAK 765

Query: 659 RNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R  +S++     N  G  A++L      ++     ++++ ++   K G+ +R  +  ++ 
Sbjct: 766 RTAISEYRLQGRNGLGIKAVQLVEGRGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVK- 824

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
             GRN+ GV      KGD ++S+A     D   D         +   +          +
Sbjct: 825 RTGRNTQGVTFAKPDKGDTILSIARNEEKDEPEDGGDAAANGTAETAQSGENVNNADEA 883


>gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
 gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82]
 gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164]
          Length = 985

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/970 (38%), Positives = 537/970 (55%), Gaps = 78/970 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  DN +I ++ LME I GPDFPTG +I G++GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIYGKSGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA ++E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L+  T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L KAR+R H+L GL +A+AN+D+++  I+ S NP  AR  L+   W A  +  +++
Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423

Query: 433 LIDDSSYTIGSD-------------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                S                       LS  Q  AILELRL RLTGL +D +  E + 
Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +IK+EL+ V  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y AQRRGG+G+S   M+++DF+  L + S H +VL F+++G VY
Sbjct: 544 LTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF--ATKHGNV 657
           + +V+ +P  S  +RG+ +IN+L L+  E IT I+P  +    +      F    K   V
Sbjct: 604 RLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPKKFTERLAAFKNFVKTNTV 663

Query: 658 RRNKLSDFIQINRSGKIAMKLDS--------------------------RDEIL-----S 686
           +              + A+ +                             DEI+      
Sbjct: 664 KLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEIIIEFAQQ 723

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            E+  +   + + T  G   R     +  F+   S G+R I L + D +I + I      
Sbjct: 724 AESVRKNYYVFMATASGTVKRV---ELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQ 780

Query: 747 ---------------------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                                    +      ++   +    +  +  S   DSS    +
Sbjct: 781 IMLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVV 840

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N  G LV   
Sbjct: 841 SRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN--GELVGAV 898

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV-- 903
            +++  +++L+SD GTL+R    E+    R  +GV +    + E +V V  I   E    
Sbjct: 899 AIDETKELMLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVGVVSIEAVEEDEV 958

Query: 904 ---DEAESTE 910
              +  ESTE
Sbjct: 959 EAFETVESTE 968



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 86/257 (33%), Gaps = 21/257 (8%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VKRV L  +   R  G     + + +ED +  + I      ++ FS+ G 
Sbjct: 732 YVFMATASGTVKRVELEQFSNVRSNG--LRAIELNEEDTLIGVTITDGEQQIMLFSNEGK 789

Query: 598 VYKEKVWRLPIGSPQARGKALI---------------NILSLNQGERITTIMPFPEDESS 642
             +     +      A+G   +                            +         
Sbjct: 790 AIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVV 849

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLT 699
                V+ A+ +G  +R  + DF    R   G IA+K      E++      +  +++L 
Sbjct: 850 PETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDETKELMLI 909

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G  VR   + +    GRN+ GVR I L +G+ ++ +  +   + D  E    ++   
Sbjct: 910 SDGGTLVRTRAAEV-AQTGRNAQGVRLIRLGEGETLVGVVSIEAVEEDEVEAFETVESTE 968

Query: 760 AQRRLISGDTEEITSLK 776
                 +    +     
Sbjct: 969 QLEVEKTETEHQQPQED 985


>gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
 gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4]
 gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17]
          Length = 821

 Score =  814 bits (2101), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/846 (42%), Positives = 521/846 (61%), Gaps = 36/846 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +E+  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQEQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K +  LL D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARMSKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I++R    IE+ +  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G
Sbjct: 242 IILRAKVEIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 MRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQTLYYYLEHQQV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  ++N+L +++GE +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIVNLLEVDKGEWVNAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFA 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I+L   DQV+ M IV    +     +  Y K        +     +     N +   G +
Sbjct: 692 ITLGDEDQVVGMEIVEEDMNVLIVTKNGYGKRTPVDEYRLQSRGGKGLKTCNITDKNGKL 751

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
              +       E+ I+ ++  G   R          R+ +G+R   +    E+  +    
Sbjct: 752 VAVKSV---TGEEDIMLITAAGIIIRMPVDQISQMGRNTQGVRLIRLENEQEVATVAKA- 807

Query: 846 PVNDND 851
             ++ D
Sbjct: 808 QKDEED 813


>gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
 gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 879

 Score =  813 bits (2100), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/849 (44%), Positives = 532/849 (62%), Gaps = 20/849 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + AH LL DL K+TVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A ID+ +I L+ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LTEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L GLAIA+AN+D ++ +IR + +P  A+  L+ ++W    +  +++ 
Sbjct: 367 IFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             +G  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI 
Sbjct: 427 AGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL+S  RL+ +I++EL ++K +    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGG+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+ L+  DE++ V+     ++ +L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRSAGIIAVNLNDGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVRSM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI+L   D+V+S+ I                  +A     +        +    S     
Sbjct: 723 GINLQGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGK 782

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                Q     +  I+ +++ G   RT   +  I  R+ +G+     ++      +V + 
Sbjct: 783 VVGAVQVDTADQ--IMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDE---HVVGLQ 837

Query: 846 PVND--NDQ 852
            V +   D+
Sbjct: 838 RVAEPVEDE 846



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 15/210 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R  G     +   DE    DL         + FS+ G V +  
Sbjct: 650 TASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TDGSDEAMLFSAEGKVVRFS 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  ++L   +R+ +++             ++  T++G  +R  +
Sbjct: 708 EQAVRSMGRTATG---VRGINLQGEDRVVSLI------IPRGEGDILTVTQNGFGKRTAV 758

Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++   +R+ K  + +       +++        + I++ T  G  VR  +S +    GR
Sbjct: 759 SEYPTKSRATKGVISIKVSERNGKVVGAVQVDTADQIMMITDAGTLVRTRVSEV-SIVGR 817

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYD 749
           N+ GV  I  A+ + V+ +  V     D +
Sbjct: 818 NTQGVTLIRTAEDEHVVGLQRVAEPVEDEE 847


>gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12]
 gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12]
          Length = 826

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/910 (39%), Positives = 553/910 (60%), Gaps = 93/910 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FILSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIADLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L VY  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKVYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F      G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR
Sbjct: 627 NLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GR 685

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV GI L + D V+   ++                                      
Sbjct: 686 TTRGVIGIKLNENDFVVGAVVI-------------------------------------- 707

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 708 --------------SGDGNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 751

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            LV +  V+D +  +++++    +IRV + +IR   R T GV + +TA  ++V+ V    
Sbjct: 752 NLVGIISVDDENLDLMILTASAKMIRVSIKDIRETGRKTSGVKLINTA--DKVMYVNSCP 809

Query: 899 ESEIVDEAES 908
           + E  +  E+
Sbjct: 810 KEEESEILEN 819


>gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
 gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300]
          Length = 809

 Score =  813 bits (2099), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/889 (40%), Positives = 518/889 (58%), Gaps = 84/889 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+Q G+  N+K+ K 
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+A+IYDA+ R+ Q W++R  L++ QGNFGS+DGDPPAA RYTE R
Sbjct: 63  AAVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L DL K+TV  +PNYD +  EP VL +  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID PDI LD +M  + GPDFPTG  I  R GI+ AYATG   + +RG +
Sbjct: 183 LTEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRIS-RQGIREAYATGHAGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            I++    R QIV+TEIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  R+V+E
Sbjct: 242 RIDE-KNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQS F+V  +++   +P    LI  ++AF+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVMNLSIVNGEPRVLPLIDTMRAFLDHRRDVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAH+L GL  A+ ++DEV+  IR S     AR  LMQR             
Sbjct: 361 QYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q +AIL++RL RL GL R+ +  E + L   I     IL  
Sbjct: 408 -------------FTLTEIQAQAILDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+  ++D     RR+ I +   D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 ERLLWREIKKEIRDIRDRYGDERRSTITDLEDDISKEDLIAVEDMVITMTKAGYLKRTKL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP     A
Sbjct: 515 DAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N++          I      +        VFATK G V++  ++++  I  +G 
Sbjct: 575 KGTHIRNLIP--ALREDENIASVLSVKGFNEPGSFVFATKRGMVKKTLITEYGNITSAGL 632

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++ V+     +D++L TK GQ +RF  + +R   GR + GV GI L +GD
Sbjct: 633 IAINLQPGDELIGVDIQRDGDDVVLATKEGQAMRFAATEVRD-TGRATQGVIGIRLREGD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SMA+V   +   +                                            
Sbjct: 692 EVVSMALVPSGEESSE-------------------------------------------- 707

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L +SE G GKRT   D+    R G G+   DV+  ++ G LVA+  V  N+++
Sbjct: 708 ------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVT--DKTGKLVALTHVAGNEEL 759

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++++KGT+IR  V E+R+  R  +GV + +  + +RV+S   IR  + 
Sbjct: 760 MVLTEKGTVIRTRVEEVRVTGRNAQGVKVINLGEKDRVISAFPIRREDE 808



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 56/261 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILLTTKLGQC 705
           V+  TK G ++R KL  +   +R G+ A        D    V   +  + +L  T  G+ 
Sbjct: 500 VITMTKAGYLKRTKLDAYRAQSRGGRGASGGRLREEDANTRVFVGSTHDYLLFFTDQGRV 559

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
               I  +   AGR++ G                                          
Sbjct: 560 FHEKIYDL-PEAGRDAKG------------------------------------------ 576

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSG 824
                 I +L      + NI+     +   +    +  +++G  K+T   ++  I++   
Sbjct: 577 ----THIRNLIPALREDENIASVLSVKGFNEPGSFVFATKRGMVKKTLITEYGNITS--- 629

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+ A ++        L+ V    D D ++L + +G  +R    E+R   RAT+GV+   
Sbjct: 630 AGLIAINLQPG---DELIGVDIQRDGDDVVLATKEGQAMRFAATEVRDTGRATQGVIGIR 686

Query: 885 TAKDERVVSVERIRESEIVDE 905
             + + VVS+  +   E   E
Sbjct: 687 LREGDEVVSMALVPSGEESSE 707


>gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
 gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund]
          Length = 846

 Score =  812 bits (2098), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/888 (40%), Positives = 517/888 (58%), Gaps = 86/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I    I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K 
Sbjct: 2   NNEGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YD+L RMAQD+S+R  L++G GNFGSVDGD  AA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GIK AY TGRG ++I
Sbjct: 182 PPHNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIVGKSGIKKAYETGRGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+
Sbjct: 242 RSKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LNQLY++T +Q  F + M+AL   +P   +L  +LK ++ F+EEV+ 
Sbjct: 302 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPRVLSLKEVLKHYIKFQEEVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  L+ +          
Sbjct: 362 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTGL R+ I  E   L   IK   +I
Sbjct: 412 ----------------FNLSEKQANAILDMKLQRLTGLEREKIEEEYAKLMESIKYFREI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549
           LS +  LL IIK EL  +K +    RRT IV G  +  + ED I   D+V+T++H GY+K
Sbjct: 456 LSDKDLLLKIIKDELNEIKVKYGDERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y AQRRGG+G   +  +++DFV  +   STH ++LFFS+ G VYK K +++P  
Sbjct: 516 RLPVETYSAQRRGGRGIQAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKAYQIPEA 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  L+N+L            P  +DE   N +Y+                     
Sbjct: 576 GRTAKGMNLVNLL------------PLEKDEKIQNVIYL--------------------- 602

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                             +    +  +++ TK G   +  +            G+  I+L
Sbjct: 603 ------------------KEFKPDRYLIMGTKNGLIKKTSLDKYSSI---RKNGLNAINL 641

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D++IS   V     D +         + +            +    +    +  E  
Sbjct: 642 RENDELIS---VRVTTGDCNIIYATKNGYAIKFDENDVRPMGRNATGVKAITLRDDDEVV 698

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+   E+ +L VSE G+GKRT   ++ +  R GKG+    +S+  + G L+    V D
Sbjct: 699 SMEVASDERDLLVVSENGYGKRTPIKEYTLQKRGGKGVITYKISE--KTGLLIGARSVED 756

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D+++L++D G  IR+ V++I + SR   GV +  T ++E+VV++ ++
Sbjct: 757 EDELMLINDSGIAIRINVSDISVTSRNAMGVTLMRTVEEEKVVTIAKV 804



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 62/129 (48%), Gaps = 6/129 (4%)

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
             +    V G+ ++   ++L  +   ++T++  G+ KR     +    R G+GI+A    
Sbjct: 479 DERRTEIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGIQAMTTK 538

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + +  ++     + +D I+  S++G + ++   +I  A R  KG   V +    KDE+
Sbjct: 539 EDDFVEHIITS---STHDNILFFSNRGRVYKLKAYQIPEAGRTAKGMNLVNLLPLEKDEK 595

Query: 891 VVSVERIRE 899
           + +V  ++E
Sbjct: 596 IQNVIYLKE 604


>gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7]
          Length = 826

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/886 (40%), Positives = 541/886 (61%), Gaps = 89/886 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 7   NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVA 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 67  YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+I
Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H + E++D  + V++NP+ +LD ++E ++GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 187 PPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RV
Sbjct: 247 RAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++
Sbjct: 306 VIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLCLFLNHRKTIII 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R          
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER---------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTGL RD I+ E  +L   I +   I
Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGI 459

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  RL G++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKR
Sbjct: 460 LKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y  KV+++P  S
Sbjct: 520 VDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A GKA++N++SL   E+I   +   +     +   + F TK+G V+R  LS+F     
Sbjct: 580 RIAMGKAVVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFESNRS 636

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR + GV GI L
Sbjct: 637 CGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEDVREI-GRTTRGVIGIRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D V+   ++                                                
Sbjct: 696 NENDFVVGAVVISDDGNK------------------------------------------ 713

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L+VSE G GK+T +  +R  +R GKG+    +++  + G LV V  V+D
Sbjct: 714 ----------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTGNLVGVISVDD 761

Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +  +++++    +IRV + +IR   R   GV + +TA  ++V+ V
Sbjct: 762 ENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTA--DKVMYV 805



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/237 (21%), Positives = 100/237 (42%), Gaps = 19/237 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGD 733
           + LD+ DEI+ +   +Q  +     K     RF +S I     +  + +R   L   + D
Sbjct: 387 IALDNIDEIVQLIKTSQSPE---AAKNALMERFTLSEI---QSKAILEMRLQRLTGLERD 440

Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++      +L   +D +  +     ++   +    + +E  S    + ++ +      ++
Sbjct: 441 KIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFSSPRRTEIQESYENIDIED 500

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E  ++++S KG+ KR     +   NR GKG     +S        +  F V +   
Sbjct: 501 LIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKG----KLSGSTYEDDFIENFFVANTHD 556

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           I+L +++KG L  + V +I  ASR   G   V + S A DE++  +  +   +  DE
Sbjct: 557 ILLFITNKGQLYHLKVYKIPEASRIAMGKAVVNLISLAPDEKI--MATLSTKDFSDE 611


>gi|317482364|ref|ZP_07941384.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916244|gb|EFV37646.1| DNA gyrase, subunit A [Bifidobacterium sp. 12_1_47BFAA]
          Length = 883

 Score =  812 bits (2097), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/918 (37%), Positives = 511/918 (55%), Gaps = 97/918 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +       +  + I    +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M 
Sbjct: 26  ADTTDYGLMDTGERIQRKDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMY 85

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   ++ Y KC+R+ G+VMGKYHPHG++AIY  L RMAQ WS+R +L++GQGNFGS  
Sbjct: 86  DGGYRPDRGYNKCSRVVGDVMGKYHPHGDSAIYGTLVRMAQSWSMRNMLVDGQGNFGSPG 145

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  G
Sbjct: 146 DDPAAAMRYTECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSAG 205

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGI 237
           IAVGMATNIP HN+ EV DG    +D+PD   + L+     II+GPDFPTGA ILG  GI
Sbjct: 206 IAVGMATNIPPHNMREVADGVHWALDHPDASREELLENLIRIIKGPDFPTGATILGHKGI 265

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TGRG I +R V + E+    R  +VVTE+PYQVN   ++  I E VR+ +I  IA
Sbjct: 266 EQAYRTGRGLITMRAVVNTEEI-NGRMCLVVTELPYQVNPDRLVVSIREAVRDGKIQGIA 324

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L  
Sbjct: 325 DMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDA 384

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            ++ +V  + +V+ RRT YL  +A +R H+L G   A+  LDEV+ +IR S + +TAR  
Sbjct: 385 FIRHWVNHQLDVIARRTAYLKREAEERDHILQGYLKALDMLDEVIALIRASEDTDTARTG 444

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                          G + + +VQ  AIL ++L  LT + RD I  E
Sbjct: 445 LM--------------------------GLLDIDQVQADAILAMQLRTLTRMNRDKIVAE 478

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  +I + +DIL+   R   II  EL  +  +    RRT+I+    +M  ED I  E
Sbjct: 479 HEELQRKIADYIDILAKPERQRKIIGDELDEIVAKYGDDRRTKILPFSGEMNVEDLIAEE 538

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVTV+H G++KR     YR+Q RGGKG  G  +R++D V   F+ STH  +LFF++ G
Sbjct: 539 NVVVTVTHSGFIKRTKADEYRSQHRGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTNKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT+ G 
Sbjct: 599 RVYRIKAYELPEGSRDSKGQHVANLLQFAPDESIQTVLSIPNYEV---AKYLVLATRSGK 655

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQENDILLTTKLGQCVRFPI 710
           V++  L+++    + G IA++L +       DE++    C  E+DI+L +KLG  ++F  
Sbjct: 656 VKKTPLAEYDSPRQGGLIAVRLMADENGENADELIGAALCNAEDDIILVSKLGMSLKFQA 715

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV+G+     D +++M +V                           
Sbjct: 716 DDEQLRPM-GRQTAGVQGMKFRNDDSLLAMDVVP-------------------------- 748

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       ++ +  V+ +GF KRT+  ++R+  R+G GI+
Sbjct: 749 -------------------------GDSDKDLFVVTNEGFAKRTAISEYRLQGRNGLGIK 783

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A  + +    GALV    V+++DQ++ +   G +IR  V+E++   R T+GV      K 
Sbjct: 784 AVQLVEG--RGALVGALVVSEDDQVMAIMKSGKVIRSNVDEVKRTGRNTQGVTFAKPDKG 841

Query: 889 ERVVSVERIRESEIVDEA 906
           + ++S+ R  E +  ++ 
Sbjct: 842 DTILSIARNEEKDEPEDG 859


>gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
 gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204]
          Length = 860

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/904 (40%), Positives = 545/904 (60%), Gaps = 89/904 (9%)

Query: 3   EHIISSDEEEEK--GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           +  +  DE       IT   +T E++  +L Y+++VI+ RA+PD+RDGLKPV RRIL+ M
Sbjct: 4   DDFMEFDESNFDPGHITETELTKEIRRDFLEYSMSVIVSRALPDVRDGLKPVQRRILYSM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M +  +K Y K ARI G+ MGKYHPHG+++IY AL  +AQ W++R +L++G GNFGS+
Sbjct: 64  HEMNIGPDKAYRKSARIVGDTMGKYHPHGDSSIYGALVYLAQPWNMRTVLVDGHGNFGSM 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+ K A  +L DL KDTVD   NYDG  +EP VL +RYPN++VNG  
Sbjct: 124 DGDDPAAMRYTEARMSKIAVEMLRDLEKDTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSS 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNLGE +DG  AV+DNP+I    LM  ++GPDFPTGA ILGR+GI+ A
Sbjct: 184 GIAVGMATNVAPHNLGETIDGIFAVMDNPEITATELMNYMKGPDFPTGAYILGRSGIRQA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TGRGS+++R  + IE+    + +IVV E+PY VNKA+++E+IA LVR+K I  I DLR
Sbjct: 244 FETGRGSVIMRAKTKIEEMPNGKSRIVVYELPYMVNKASLVERIATLVRDKVIEGITDLR 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+  G RVVIEL++    DV+LNQLYR T LQS F VN V L    P + ++I +LK 
Sbjct: 304 DESNMDGIRVVIELRKDIQPDVMLNQLYRSTPLQSNFGVNNVVLFNGVPRQASMIDLLKG 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++AF++EV+VRRT++ L KA+DRAH+L GL IAV NLD ++  IR S +P  A   LM+ 
Sbjct: 364 YIAFQDEVIVRRTQFDLKKAQDRAHILEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLME- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q +AIL+++  RLTGL R+ I NE   L
Sbjct: 423 -------------------------GFGLDEIQAKAILDMQFRRLTGLEREKIENEYQDL 457

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            I+I +  DILS+ +R+L II+ EL  VK + + PRR+ I++ + D+EDED I  E++++
Sbjct: 458 LIKIADFQDILSNHARVLQIIRDELSEVKAKFNDPRRSEIIDAIADVEDEDLIPVENIII 517

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY+KR+    Y  Q RGGKG  G+ +  +D +     +STH  +L F+  G VY+
Sbjct: 518 TLSSNGYIKRLTTDTYHVQNRGGKGIKGMELHKDDIIDQFISMSTHDHLLVFTDKGKVYR 577

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ++G   IN++S+ + E I  ++P+ +D    ++ ++ F TK G ++R 
Sbjct: 578 IKGYNVPEFSRTSKGIPAINLISMEKTENIRALVPYSQD---HDSKFLFFVTKQGIIKRT 634

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              ++  IN++GKIA+KL+  DE+  V +     +I++    G+ VRF  + +R   GR 
Sbjct: 635 TFDEYENINKNGKIAIKLNEDDELAFVRSTDGNAEIIIAGSNGKAVRFLENTVRPL-GRT 693

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G ++  G  VI +A  L  +                                   
Sbjct: 694 ARGVKGFNVDGG-YVIGLATNLEGE----------------------------------- 717

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             +ILT++E GFGK++S  D+R++ R  +G++  +V++  + G 
Sbjct: 718 ------------------YILTITENGFGKKSSLADYRMTRRGARGVKTVNVTQ--KSGK 757

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV +  V  ++  ++++  G +IR+ + ++ + SR+ +GV + +  KD+ V SV  +   
Sbjct: 758 LVCMRAVRGDEDCMIMTAGGIVIRISLKQVSVYSRSAQGVKVINV-KDDIVSSVAILEPE 816

Query: 901 EIVD 904
           E  +
Sbjct: 817 EDSE 820


>gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1]
          Length = 852

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/888 (40%), Positives = 538/888 (60%), Gaps = 93/888 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+ +IY+AL ++AQ+W+ R  L++G GNFGSVDGD  AA RYTE RL K
Sbjct: 72  VGDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL E
Sbjct: 132 ISMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 198 VVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            ++  + +IDN      + ++D +M+I++GPDFPTGA ILGR GI +AY TGRG I +R 
Sbjct: 192 TINAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRA 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++ IE  +  + +IVVTE+PY VNK+ +++ + +LV+ KRI  I D+RDES R+G RVVI
Sbjct: 252 ITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++  +A+VILNQL+++T LQ  F   M+AL    P+   +  +L  ++  +E+VV RR
Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNIKDMLTYYLKHQEDVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY LNKA +RAH+L G  IA+ N+DEV+ IIR S N   A+ +L++R            
Sbjct: 372 TKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------ 419

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AI+++RL  LTGL R+ I NE N L  +I E  +IL+
Sbjct: 420 --------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELIAKIAEYKEILA 465

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++LLG+IK EL ++ D+    RRT I     D+ DE+ I RE++V++++ LGY+KR+P
Sbjct: 466 DENKLLGVIKTELAAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMP 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              ++ Q RGGKG  G+   D D + ++F+ +TH  ++FF+++G VY+ K + +P     
Sbjct: 526 KDTFKVQNRGGKGIKGMNTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRN 585

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG A++N+L L  GE++T I+P        +  Y++ ATK+G V++ K+  F  I ++G
Sbjct: 586 ARGVAIVNLLQLLPGEKVTAIIPIAGF----DKKYLMMATKNGIVKKTKIEAFENIRKTG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L+  DE++ V+  + END+ L T  G C+RF    +R   GR S+GVRGI   KG
Sbjct: 642 LAAITLNEGDELIEVKATSGENDVFLVTAKGMCIRFNEECVRD-TGRTSMGVRGIRCDKG 700

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI+M + +  D                                               
Sbjct: 701 DEVIAMQLDVQGD----------------------------------------------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                + +   + KG GKRT   +F    R GKG++   +++  + G +V+   V ++  
Sbjct: 714 -----EMLFVTT-KGMGKRTELSEFAPQMRGGKGVKCYRITE--KTGDIVSAKAVTNDHD 765

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIR 898
           I++++++G +IR+  ++I +  R T GV + +  KD    V SV ++ 
Sbjct: 766 IMMMTNEGIMIRMHCSDITVIGRITSGVKLMNIGKDGNTFVASVAKLA 813


>gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622]
 gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622]
          Length = 942

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/938 (38%), Positives = 529/938 (56%), Gaps = 92/938 (9%)

Query: 1   MTEHIISSDEEEE--------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M +                    +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPV
Sbjct: 1   MADDTTDKPASPSAPPPPDSAGELIPVNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M  +G   N+ Y K AR+ G+V+GKYHPHG++++YDA+ R+AQ+WSLR LL++
Sbjct: 61  HRRVLYAMNDLGNLHNRAYKKSARVVGDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD PAA RYTE R+++ A  LL D+ K+TVDF PNYD S +EP+VL +++P
Sbjct: 121 GQGNFGSVDGDSPAAMRYTEVRMERLAEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG  GIAVGM TNIP HN+ EV+ G + +IDNP   +  LME I GPDFPTGA+I 
Sbjct: 181 NLLVNGSSGIAVGMTTNIPPHNMTEVISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIIT 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GR GI  AY TGRG + IR  S IE +    RE I+ +EIPYQVNKA ++EKIAELVREK
Sbjct: 241 GREGIVRAYETGRGQVTIRARSDIETSKRGDREAIIFSEIPYQVNKARLIEKIAELVREK 300

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDRQG R+VIELKR A + V+LN LY  TSL++ F   M+A++G +P  
Sbjct: 301 KLEGISDIRDESDRQGMRIVIELKRDAISQVVLNNLYAMTSLETTFGAVMLAIDGGQPRT 360

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L  F+A R +VV RRT+Y L KA  R H++ GL +A   +D VV +IR S +P+
Sbjct: 361 LNLKEMLDRFIAHRRDVVTRRTRYELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPD 420

Query: 412 TARRELMQRSWNA---SDIKDLIDLIDDSSYTIGSDGTM--------------------Y 448
            AR  LM     +    +    +  ID        +  +                     
Sbjct: 421 EARWGLMNILSPSLYEHERFATLQRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAG 480

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            SE Q + ILE+RL RLTGL R+++  EL  L  +I    DIL++   LL +IK EL+ +
Sbjct: 481 FSEGQAQNILEMRLQRLTGLQREELFRELIGLVRDIARLQDILANERSLLNVIKTELVEI 540

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           ++     RRT I   + +M  ED I  E MVVT+SH GY+KR PL+ YRAQ+RGG+G++G
Sbjct: 541 RERYGDKRRTEITGAVDEMTSEDLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTG 600

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
              +++DFV+ LF+ STH  ++  ++ G +Y  KV ++P  S  +RGKA++N++   +GE
Sbjct: 601 AATKEDDFVSKLFVASTHAYLMPITTKGKLYSLKVHQVPQASRTSRGKAMVNLVQFGEGE 660

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           R+  ++   +                                                  
Sbjct: 661 RLAQVLVTRDFP------------------------------------------------ 672

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              +   +   TK G   R   + +  F    S G+  + +  GD+++++ I   +    
Sbjct: 673 ---ENRYVFFVTKRGVVKR---TDLSAFENVRSSGIIALGIDDGDELVAVMITDGSKDIL 726

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                 M     +  + S   +              +      E       ILTV+E G+
Sbjct: 727 LSTASGMSIRFPETEVRSMGRQAYGVKGITLEDGDEVVGADVVETDAA---ILTVTENGY 783

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT   ++R   R GKGI     ++ N  G +V +  V + D+++LV++ G LIR+ V 
Sbjct: 784 GKRTQEAEYRQQGRGGKGIIDIKTTERN--GKVVGLLQVKEADEVMLVTNGGMLIRMRVK 841

Query: 869 EIRIASRATKGVVIFST-AKDERVVSVERIRESEIVDE 905
           EI +  R T+GV + +   + E+V+++ ++ ES+  +E
Sbjct: 842 EISVIGRNTQGVRLIALENEQEKVMAISKLPESDESEE 879



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 97/247 (39%), Gaps = 16/247 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V  V+  G VKR  LS +   R  G    G+   D D +  + I      +L  
Sbjct: 671 FPENRYVFFVTKRGVVKRTDLSAFENVRSSGIIALGID--DGDELVAVMITDGSKDILLS 728

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G   +     +     QA G   +  ++L  G+ +              +  ++  T
Sbjct: 729 TASGMSIRFPETEVRSMGRQAYG---VKGITLEDGDEVVGADVVET------DAAILTVT 779

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R + +++ Q  R GK  + +       +++ +    + ++++L T  G  +R  
Sbjct: 780 ENGYGKRTQEAEYRQQGRGGKGIIDIKTTERNGKVVGLLQVKEADEVMLVTNGGMLIRMR 839

Query: 710 ISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           +  I    GRN+ GVR I+L  + ++V++++ +  +D   +          A     +  
Sbjct: 840 VKEI-SVIGRNTQGVRLIALENEQEKVMAISKLPESDESEENGEAVAPAEGAVPTAEANA 898

Query: 769 TEEITSL 775
            E   + 
Sbjct: 899 PEATDAA 905


>gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum]
          Length = 907

 Score =  812 bits (2096), Expect = 0.0,   Method: Composition-based stats.
 Identities = 381/872 (43%), Positives = 536/872 (61%), Gaps = 42/872 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+GC+A I+N DI +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  +
Sbjct: 187 LTEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSKA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE     +E I+V EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE 
Sbjct: 247 DIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ+ F +NMVAL+   P+ F L  +LK FV  R EVV RRT 
Sbjct: 307 KRDAVGEVVLNNLYAQTQLQTTFGINMVALDNGLPKLFNLKEMLKCFVDHRREVVTRRTI 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++  
Sbjct: 367 FELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLERA 426

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
              +             DG  +L+E Q +AILELRL RLTGL  + I +E  +L  EI E
Sbjct: 427 GTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEIAE 486

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+ VT+SH G
Sbjct: 487 LMHILASTERLMEVIREELETVRDAFGDARRTEITAATHDIDMEELIAREDVAVTLSHAG 546

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK   LS Y AQRRGGKG+S   M++ED++  L + +TH  +L FS+ G  Y+ KV++L
Sbjct: 547 YVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRGKTYRLKVYQL 606

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P+ S  ARGK ++NIL L +GERIT I+P  E     ++ ++  AT  G V++  LS F 
Sbjct: 607 PLASRTARGKPIVNILPLEEGERITAILPVTEFS---DDKFIFMATGDGTVKKTSLSSFA 663

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-------------- 712
            +  +G IA+ L   D ++ V+     ++I+L +K G+ VRF  S               
Sbjct: 664 NVRSNGLIAVNLREDDSLIGVDITDGNSEIMLFSKFGKVVRFKESEETPVLDENGQPVLD 723

Query: 713 -----------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                      +R   GR + GVRG+ LA+GDQV+S+ IV   D D              
Sbjct: 724 EHGQPEIKFKGVRAM-GRTASGVRGMKLAEGDQVVSL-IVPSNDGDILTVTQNGYGKRTT 781

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                        + +    E N       + +  ++F + +++ G   RT   +     
Sbjct: 782 LGEYPTKGRATQGVVSIKVSERNGQVAGAVQTEEGDEF-MMITDAGTLVRTRVAEVSQVG 840

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           R+ +G+     ++      +V +  + + + +
Sbjct: 841 RNTQGVTLIRTAEDE---NVVGLQRIEEIEDV 869



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 149/447 (33%), Gaps = 36/447 (8%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +  +  H+L      +  + E +  +R +     ARR  +  + + 
Sbjct: 469 EHEKILDEYKALLEEIAELMHILASTERLMEVIREELETVRDA--FGDARRTEITAATHD 526

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D+++LI   D +     +    Y    Q  +  E +     G     ++ E     + +
Sbjct: 527 IDMEELIAREDVAVTLSHAGYVKY----QILSDYEAQRRGGKGKSATKMKEEDYIERLLV 582

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRE 536
               D +   S      + ++  +     T R   IV  L   E E             +
Sbjct: 583 ANTHDHILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVTEFSDD 642

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+  LS +   R  G     V +R++D +  + I   ++ ++ FS  G
Sbjct: 643 KFIFMATGDGTVKKTSLSSFANVRSNG--LIAVNLREDDSLIGVDITDGNSEIMLFSKFG 700

Query: 597 FVYKEKVWRL----PIGSPQARGKALINILSLNQGERITTIMP------------FPEDE 640
            V + K                 +     +       +                      
Sbjct: 701 KVVRFKESEETPVLDENGQPVLDEHGQPEIKFKGVRAMGRTASGVRGMKLAEGDQVVSLI 760

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDIL 697
              N+  ++  T++G  +R  L ++    R+ +  + +   +    V       + ++ +
Sbjct: 761 VPSNDGDILTVTQNGYGKRTTLGEYPTKGRATQGVVSIKVSERNGQVAGAVQTEEGDEFM 820

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  VR  ++ +    GRN+ GV  I  A+ + V+ +  +   +         +  
Sbjct: 821 MITDAGTLVRTRVAEV-SQVGRNTQGVTLIRTAEDENVVGLQRIEEIEDVELPEGEELPE 879

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGN 784
             A   ++   ++   +    SS   +
Sbjct: 880 GEASVAILEVQSDAEETDSEPSSDSED 906


>gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
 gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2]
          Length = 841

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/827 (43%), Positives = 525/827 (63%), Gaps = 35/827 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     +  ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DTPNSQVKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PFKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDG+ +EPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+   PD+ +  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  +E I+V EIPYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 LRAKVEIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V+
Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLQHYLDHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM +         
Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I +E +SL   I E   
Sbjct: 414 -----------------FNLSEKQAQAILDMRLQRLTGLEREKIEDEYSSLVALIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  VK+  +  RRT IV  G+  +EDED I RE++V+T++H GY+
Sbjct: 457 ILADEEKVLEIIREELTEVKERFNDKRRTEIVAGGIEQIEDEDLIPRENIVLTLTHKGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YRAQ+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHDTILFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +++ E +  I+P  E     ++ ++ F TK G  +R+ LS F  I
Sbjct: 577 FSRTAKGIPIINLLGVDKDEWVNAIIPVEEFA---DDWFLFFTTKQGISKRSPLSSFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV       +I++ T  G  +RFP   +R   GR + GV+GIS
Sbjct: 634 RNNGLIALNLREDDELISVRLTDGSKEIIIGTSHGMLIRFPEEDVRSM-GRTATGVKGIS 692

Query: 729 LAKGDQVISMAIVLHADADYDERIC-YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L+ GD+V+ M ++             Y K   A    + G   +     N +   G++  
Sbjct: 693 LSAGDEVVGMEVLEDDSQILIVTKNGYGKRTPAGEYRVQGRGGKGIKTCNITDKNGSLVS 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            +       E+ ++ ++  G   R +  D     R+ +G+R   +++
Sbjct: 753 MKAV---TGEEDVMLITTGGVLIRMAVNDISTMGRNTQGVRLIRINE 796


>gi|212551088|ref|YP_002309405.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
 gi|212549326|dbj|BAG83994.1| DNA gyrase subunit A [Candidatus Azobacteroides pseudotrichonymphae
           genomovar. CFP2]
          Length = 821

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/900 (37%), Positives = 536/900 (59%), Gaps = 86/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  +  I  V I ++M+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G   ++
Sbjct: 3   DNNQDRIIQVDIEEQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMNELGNHSDQ 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  G+V+GKYHPHG++++Y AL RMAQ+W LR  L++GQGNFGS+DGD PAA R
Sbjct: 63  PYKKSARTVGDVLGKYHPHGDSSVYFALVRMAQNWLLRYPLVDGQGNFGSIDGDAPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  +L D+ K+TVDF  N+D + +EP VL  R P +L+NG  GIAVGMATN
Sbjct: 123 YTEARLGNLAEEMLRDIDKNTVDFNFNFDDTLREPSVLPTRVPTLLMNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +P HNL E ++G +A ID+  +ID+D LM+ I+ PDFPTGA I G  GI+  +  G+G I
Sbjct: 183 MPPHNLTECINGIIAYIDSKGEIDIDGLMQYIKAPDFPTGATIYGFQGIREVFEVGKGRI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++RG   IE    ++E+IV+ EIPY VNK  ++E IA LV EK++  +  + DESDR+G 
Sbjct: 243 LLRGKVEIE-IHNNKEKIVIREIPYLVNKKELIEHIAVLVSEKKLEGVHHINDESDREGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+++K+  ++ V+LN+LY+ T+L+S F+VN +AL   +P    L  ++  FV  R EV
Sbjct: 302 RIVVDVKKDFNSGVLLNKLYKLTALESSFNVNNIALVNGRPRTLNLKELICYFVEHRVEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRRT+Y LN+   R H++ GL IA  ++DE+V II  S NP  A   L           
Sbjct: 362 VVRRTQYDLNRVERRVHIVDGLIIASNHIDEIVAIIHSSQNPNEAIDRL----------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G   L+E+Q+RAI+E+RL +LTGL +D +R E   L   I    
Sbjct: 411 ---------------SGRFDLTEIQSRAIVEMRLRQLTGLEQDKLRTEFGELKKMILCWK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +ILS+R+ L+ IIK EL+ V+D     R+T IV    D   +D    ++M++T+SHLGY+
Sbjct: 456 EILSNRNILMKIIKDELIEVRDRFGDVRKTDIVYSTDDSNSDDFYADDEMIITISHLGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL  +RAQ RGG G     +RD+DFV  ++  + H  +LFF+  G  Y  KV+++P 
Sbjct: 516 KRTPLVDFRAQNRGGVGTKSSEIRDKDFVEYIYAANMHAMMLFFTRKGRCYWLKVYQIPA 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           G+  ++G+A+ N+L+++  ++++  +      D+    + Y+VF TK G +++  L+ + 
Sbjct: 576 GAKTSKGRAIQNLLNIDTNDKVSAFIRVKYLSDKDFVESHYLVFCTKRGIIKKTLLNAYS 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +  ++G  A+ +   DE+++V+     N+I++  + G+ +RF  + +R   GR + GV  
Sbjct: 636 RPRQNGVKAITVHDGDEVIAVKMTNGNNEIIVANRKGRALRFNENKVRSM-GRLAAGVIS 694

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           ++L    D++I M I+                                            
Sbjct: 695 MTLDLVDDEIIGMIIIND------------------------------------------ 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     K + +L VSE+G+GKR+   D+RI NR GKGI+  ++++  + G LV++ 
Sbjct: 713 ---------KKRENVLVVSEQGYGKRSRVGDYRIVNRGGKGIKTLNITE--KTGFLVSIK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVD 904
            V +++ +++++  G  IR+ V+++ +  RAT+GV + +  K  + + SV ++     ++
Sbjct: 762 NVTEHNDVMIINKSGIAIRIKVSDLNVIGRATQGVRLINLEKRGDEIASVCKVMSETDLE 821


>gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137]
 gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1]
 gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1]
 gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1]
 gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1]
 gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1]
 gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1]
 gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1]
 gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1]
 gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
 gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2]
 gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1]
 gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 891

 Score =  811 bits (2095), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/930 (37%), Positives = 507/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +   + 
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S    + V  +    E  + +E   ES E
Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 95/268 (35%), Gaps = 7/268 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  L  Y + R+ G         ++D +      S    VL  
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +          P  R  + +  +     + + ++     D    ++ +V  AT
Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  
Sbjct: 745 GGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +    GR+++GV+ +S+  GD V  +A+      + +     ++ +           
Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGE 863

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
               S   D     + +    +     E
Sbjct: 864 VVRRSDTVDGDRAVDTAGNDMKPEDNGE 891


>gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 834

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/901 (37%), Positives = 522/901 (57%), Gaps = 91/901 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +++ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++ Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKV 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+      E I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G R
Sbjct: 243 RARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+E+K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+
Sbjct: 303 VVLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++          
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +   +E Q  AILELRL +LTGL  + I+ E   L  +I     
Sbjct: 413 ----------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQ 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +LS    +  II+ EL  +       RRT I        + ED I  E +++T+S   YV
Sbjct: 457 VLSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +    + E  ++L T LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V+S  IV                                           
Sbjct: 693 GVSLKNEEDKVVSCQIVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        Q +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 712 ------------NQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            PV D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  D
Sbjct: 758 IPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDD 817

Query: 905 E 905
           E
Sbjct: 818 E 818


>gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
 gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba]
          Length = 831

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/901 (39%), Positives = 540/901 (59%), Gaps = 90/901 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     
Sbjct: 7   NETKNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVA 66

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RY
Sbjct: 67  YKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAVGMAT+I
Sbjct: 127 TEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H + E++D  V V++NP+ +L+ ++E I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 187 PPHRIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIYGKVGIIEAYKTGRGRVKV 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++RDESDR+G RV
Sbjct: 247 RAKVHVEKTK-NKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRV 305

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L  F+  R+ +++
Sbjct: 306 VIELKRDAMSEIVLNHLYKLTAMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIII 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R          
Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMER---------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q++AILE+RL RLTGL RD I+ E  +L   I E   I
Sbjct: 416 ----------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDELNGI 459

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV++S+ GYVKR
Sbjct: 460 LKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYENIDIEDLIANEPMVVSMSYKGYVKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L  Y  Q RGGKG+      + DF+   F+ +TH  +LF ++ G +Y  KV+++P  S
Sbjct: 520 VDLKAYERQNRGGKGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEAS 579

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A GKA++N++SL   E+I   +   +     +   + F TK+G V+R  LS+F     
Sbjct: 580 RIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRTNLSEFGSNRS 636

Query: 671 SGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              I A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   GR++ GVRGI 
Sbjct: 637 YSGIRAIVLDEYDELVSAKIVDKNSKHLLIASHSGTFIKFPLEDVREI-GRSARGVRGIR 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D VI   ++                                               
Sbjct: 696 LNENDFVIGAVVISDDHNK----------------------------------------- 714

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +L+VSE G GK+T +  +R   R GKG+    ++K  + G LV +  V+
Sbjct: 715 -----------LLSVSENGLGKQTLAESYREQARGGKGVIGMKLNK--KTGNLVGIISVD 761

Query: 849 DND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D +  +++++    +IRV + +IR   R   GV +      ++VV V    + E  +  E
Sbjct: 762 DENLDLMILTASAKMIRVSIKDIRETGRNASGVKLI--DAADKVVYVNSCPKEEEPENLE 819

Query: 908 S 908
           +
Sbjct: 820 T 820


>gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
 gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1]
          Length = 843

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/915 (40%), Positives = 539/915 (58%), Gaps = 100/915 (10%)

Query: 1   MTEHIISSDEEEEKGITS-----------VSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           M +  I+S+  +E  +              ++   M++S+L Y+++VI+ RA+PD+RDGL
Sbjct: 1   MNDDTITSNTAQEGEVIEPQQSHSRSLELRTVESVMEDSFLRYSMSVIIERALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRILF M + G     ++VK ARI+G+VMGKYHPHG+AAIYD++ R+AQDWS+R +
Sbjct: 61  KPVHRRILFSMEKNGWRPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYM 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGS+DGDPPAA RYTE R+ K    LL DL K+TVDFR NYDG  +EP VL A
Sbjct: 121 LVDGQGNFGSMDGDPPAAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPA 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTG 228
           + PN+L+NG  GIAVGMATNIP HNL E+VD  V +ID PD   L+ L++ ++GPDFPTG
Sbjct: 181 KLPNLLLNGQIGIAVGMATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTG 240

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
            ++ G   ++ AYATGRG I +R ++ IE+T   + QIVVTE+PY VNKA ++E+IAEL 
Sbjct: 241 GIVYGGDSMRQAYATGRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELH 300

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY- 347
           +EK+I  I D+RDES R   R+VIELK+ +    +LNQLY+ T+LQ+ F  NM+AL    
Sbjct: 301 KEKKIT-IQDVRDESARGKVRLVIELKKDSYPKKVLNQLYKMTALQTSFHYNMLALVDGI 359

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P    L  IL+ ++  R+ VV RRT++ L KA+DRAH+L G  IA+ N+DEV++IIR S
Sbjct: 360 QPRVLGLQDILEEYLKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRAS 419

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
            N + A R LM +                            LSEVQ ++IL L L  LTG
Sbjct: 420 QNTDEAARNLMDK--------------------------FKLSEVQAKSILALPLRTLTG 453

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LD 526
           L R  I +EL  L   I +   IL+    +L IIK ELL +K++    RRT+I+      
Sbjct: 454 LERQKIEDELAELRALIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGK 513

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
             DE+ I  ED++V ++   Y+KR  +S YR Q RGGKG+ G+  ++ D +  L   STH
Sbjct: 514 FSDEELIPDEDVIVLLTTENYIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLVPASTH 573

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +LFF++ G V++ K + +P  S  A+G A +N+L L   ERIT+I+   +     ++ 
Sbjct: 574 EWLLFFTNRGRVFRIKTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRLEK--GQKDDG 631

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+  AT HG V++  L ++  I  +G IA+KLD  DE+  +   + +N+++++T  GQ +
Sbjct: 632 YLFMATTHGTVKKTPLKEYSNIRTNGLIAIKLDDGDELRWIRRSSGQNEVIMSTAFGQAI 691

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  S  R   GR++ GVRGI L  GD+++ M                            
Sbjct: 692 RFNESDARPM-GRSARGVRGIRLRPGDRLVGM---------------------------- 722

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                    +L  ++  +L VS+KG+GK T + +F    R G G
Sbjct: 723 -------------------------DLAFEDHKLLVVSQKGYGKTTKTNNFPAHKRGGVG 757

Query: 827 IRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           I++  V+   + G +VAV  +     +++++S KG  IRV + +I    R T+GV I   
Sbjct: 758 IKSAVVTA--KTGNVVAVRSLEPEASEVLIISTKGQAIRVGLQDIPTLGRTTQGVRIMRL 815

Query: 886 AKDERVVSVERIRES 900
           ++ + V S+  I E 
Sbjct: 816 SEGDEVASLGIIPEQ 830



 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 48/238 (20%), Positives = 102/238 (42%), Gaps = 20/238 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730
           + LD+ DE++ +   +Q  D           +F +S ++         R   G+      
Sbjct: 404 IALDNIDEVIKIIRASQNTD---EAARNLMDKFKLSEVQAKSILALPLRTLTGLE--RQK 458

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             D++  + A++   +A   +    +K + A+   +     +    K  S   G  S+E 
Sbjct: 459 IEDELAELRALIAKLEAILADEKEILKIIKAELLEMKEKYGDERRTKIISQELGKFSDEE 518

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +  ++  +L  +E  + KRT   ++R  +R GKG R     +++ I  LV   P + 
Sbjct: 519 L--IPDEDVIVLLTTEN-YIKRTLVSEYRRQHRGGKGKRGMTTKEMDVIDQLV---PAST 572

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           ++ ++  +++G + R+   E+  AS   KG   V +     +ER+ S+ R+ + +  D
Sbjct: 573 HEWLLFFTNRGRVFRIKTYEVPAASLTAKGVAAVNLLQLQPEERITSIIRLEKGQKDD 630


>gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
 gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171]
          Length = 888

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/924 (37%), Positives = 516/924 (55%), Gaps = 102/924 (11%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M      ++E+   ++  +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI+
Sbjct: 1   MEPISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIV 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   ++ Y KCAR   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNF
Sbjct: 61  YAMYDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS   DPPAA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L N
Sbjct: 121 GSAGDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLAN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILG 233
           G  GIAVGMATNIP HN+ E+ +G    +D+P+   + L+     II+GPDFPTGA ILG
Sbjct: 181 GSSGIAVGMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
             GI+ AY TGRG I +R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I
Sbjct: 241 HKGIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKI 299

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   
Sbjct: 300 QGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTL 359

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L   ++ +V  + EV+ RRT+YL  +A +R H+L GL  A+  +DEV+R+IR S   E 
Sbjct: 360 SLDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGRED 419

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+                           + + +VQ  AIL ++L RL  + R  
Sbjct: 420 ARPKLME--------------------------FLDIDQVQADAILSMQLVRLANMERQK 453

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  +I +  DIL+   R   I+  EL  +  +    RRT+I+    +M  ED 
Sbjct: 454 IIDEHEELMRKIADYNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDL 513

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E++VVTV+H G++KR   + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF
Sbjct: 514 IAEENVVVTVTHSGFIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFF 573

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT
Sbjct: 574 TNKGRVYRIKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLAT 630

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQC 705
           + G V++  L+++    + G IA++L +        DE++    C   +DI+L +K G  
Sbjct: 631 RTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMS 690

Query: 706 VRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           ++F      +R   GR + GV+G+     D++++M +V                      
Sbjct: 691 LKFAADNDQLRPM-GRQTAGVQGMKFRGDDELLAMDVVPE-------------------- 729

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            +Q +L V+ +GF KRT+  ++R+  R+
Sbjct: 730 -------------------------------DSKQDLLVVTNEGFAKRTAISEYRLQGRN 758

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G G++A  +++    G+LV    V+++DQ++ +   G +IR  V E++   R T+GV + 
Sbjct: 759 GFGVKAVQLAEG--RGSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLA 816

Query: 884 STAKDERVVSVERIRESEIVDEAE 907
              K + ++S+ R  E+   DE E
Sbjct: 817 KPDKGDEIISIARNEET-GEDEVE 839


>gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1]
          Length = 891

 Score =  811 bits (2094), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/930 (36%), Positives = 506/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D +  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEMAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +     
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S    + V  +    E  + +E   ES E
Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  Y + R+ G         ++D +      S    VL  S  G   +  
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                   P  R  + +  +     + + ++     D    ++ +V  AT  G  +R  +
Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754

Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  +S +    GR
Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +++GV+ +S+  GD V  +A+      + +     ++ +               S   D 
Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGGVVRRSDTVDD 873

Query: 780 SVEGNISEERCQELKLKE 797
               + +    +     E
Sbjct: 874 DRAVDTAGNDMKPEDNGE 891


>gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7]
 gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7]
          Length = 836

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/899 (39%), Positives = 532/899 (59%), Gaps = 93/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + +  +   M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+  ++ Y
Sbjct: 2   DEYNLLNQDVESIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA   G V+G+YHPHG+A++YDAL R+AQ +SLR  L++G GNFGSVDGDPPAA RYT
Sbjct: 62  RKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTVDF+ NYD   QEP VL +R+PN+L NG  GIAVGMATNIP
Sbjct: 122 EAKMAKMAVNMLTDIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G   VI NPD  LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I +R
Sbjct: 182 PHNLHEVIEGMKIVIQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R  IVVTEIPY VNKA ++E IA LV++KR+  I DLRDE+ R G R+V
Sbjct: 242 SKTSIEEIK-GRNCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+  V+LN+L+ YT LQ    V ++AL    P+  TL  IL+ ++ F+  V+ R
Sbjct: 301 IELKKDANPQVVLNKLFSYTQLQDSVGVILLALVNGIPKILTLKQILQEYIDFQVSVIRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++R H+L GL IA+ N+DEV+ I++ S +   A+++L  R           
Sbjct: 361 RTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTR----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L++VQ   I ++ L RLTG+ R  I +EL  +   + +  DIL
Sbjct: 410 ---------------FGLTDVQADHIAQMTLGRLTGMERQKIIDELAEITATVADLEDIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R+  II +E+ +++++    RRT+I     +++ ED I  E+ VVT +++GY+KR+
Sbjct: 455 ANEQRVFDIIIEEVEAIQEKFGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRM 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+SVY+AQ RGGKG +G+  R++D +T++ + S+H ++LF ++ G  YK K + LP GS 
Sbjct: 515 PISVYKAQNRGGKGVTGMKQREDDCITEMSVCSSHDNILFITTKGIAYKMKCYELPEGSK 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG  + N+L L+    I  ++   + +   ++ Y+V  TK G ++R  LS +  + ++
Sbjct: 575 ASRGVNIKNLLELSDDNLIAAMIKVEDFD---DDKYIVMVTKRGKIKRTPLSAYKNVRKN 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ LD  DEI  V     +N++L+ T  G  +R   + +RV + R + GVR I L +
Sbjct: 632 GLIAIGLDEGDEIAGVRLTGGQNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLRE 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD V+SMA +                                                  
Sbjct: 691 GDYVVSMARIR------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               +   +LTVSE G G+R +  ++ I +R G G+           G +  +  V++ D
Sbjct: 702 ----EGATVLTVSETGLGRRVALENYPIRHRGGHGVLNYK------NGEVCGIKVVDEED 751

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            II++S  G +IR+   +I +  R ++GV +   A + +VV+  R   +E  DEAE  E
Sbjct: 752 DIIMISSDGIVIRLRACDISVMGRYSRGVRLMKVAGENKVVTFTR---TEHDDEAEIAE 807



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 13/250 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    +  +V V+  G +KR PLS Y+  R+ G     + + + D +  + +      +L
Sbjct: 600 EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRKNG--LIAIGLDEGDEIAGVRLTGGQNELL 657

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     + + S  A     +  + L +G+                   V+ 
Sbjct: 658 IATHNGMAIRISENDVRVMSRTA---HGVRAIKLREGDY------VVSMARIREGATVLT 708

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            ++ G  RR  L ++   +R G   +   +  E+  ++   +E+DI++ +  G  +R   
Sbjct: 709 VSETGLGRRVALENYPIRHRGGHGVLNYKNG-EVCGIKVVDEEDDIIMISSDGIVIRLRA 767

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             I V  GR S GVR + +A  ++V++     H D      +         +       E
Sbjct: 768 CDISVM-GRYSRGVRLMKVAGENKVVTFTRTEHDDEAEIAEVEKASEEDILKAQEEEKAE 826

Query: 771 EITSLKNDSS 780
            +        
Sbjct: 827 VLEEDTVAED 836


>gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
 gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1]
          Length = 816

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/890 (40%), Positives = 523/890 (58%), Gaps = 89/890 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + +  VSI+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y 
Sbjct: 2   SERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG+AA+YD + RMAQD++ R +L++G GNFGS+DGD  AA RYTE
Sbjct: 62  KSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP 
Sbjct: 122 ARMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H LGEV+D  + ++ +PD+ +  LME + GPDFPTGA I+GR GI+ AY TGRGSI +R 
Sbjct: 182 HQLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQIIGRGGIRKAYETGRGSITLRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    +E I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R+VI
Sbjct: 242 KAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E++R  SA V+LN LY+ T+LQ+ F +NM+AL   +P+   L   L+ ++  ++ V+ RR
Sbjct: 302 EVRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQPKVLNLKQCLQHYLDHQKIVIRRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA  RAH+L GL IA+ +LDEV+ +IR S   + A+  LM +            
Sbjct: 362 TQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++RL RLTGL R+ I  E   L   I     IL+
Sbjct: 410 --------------FQLSEKQAQAILDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRV 551
              ++L II+ ELL +K++ +  RRT IV G    ++DED I RE++VVT++H GY+KR+
Sbjct: 456 DEQKVLQIIRDELLEIKEKFNDYRRTEIVNGGLETIDDEDLITRENIVVTLTHRGYIKRL 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S YR+QRRGG+G  G+   ++DFV  L I STH  VLFF++ G VYK K +       
Sbjct: 516 PVSTYRSQRRGGRGIQGMNTNEDDFVEHLVITSTHDIVLFFTNKGKVYKAKGYE------ 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                       + +  R    +P     +   +  +                      +
Sbjct: 570 ------------IPEFSRTAKGIPIVNLLNIEKDEVI----------------------N 595

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             IA++    D             +  TTK G   R P+S+      RN  G+  I L +
Sbjct: 596 TVIAIEQFREDAF-----------LFFTTKQGIAKRSPLSSFANI--RN-HGLIAIHLHE 641

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++IS   V   D      +     M  +       +   T+    +    +  E    
Sbjct: 642 GDELIS---VKLTDGHKHIIVGTKNGMLIRFPETDVRSMGRTAAGVKAITLCSGDEVVGM 698

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E    ++ IL V+  G+GKRT + ++RI +R GKGI+  ++++ N  G +VAV  V   +
Sbjct: 699 ESLNGDEEILIVTRNGYGKRTPASEYRIQSRGGKGIKTCNITEKN--GDVVAVKTVTGEE 756

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSVERIR 898
            ++L++  G +IR+ V++I I  R T+GV +    ++   E V +V ++ 
Sbjct: 757 DLMLMTASGVMIRMAVSDISIMGRNTQGVKLIRLDEENEQEYVATVAKVP 806


>gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
 gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294]
          Length = 826

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/890 (40%), Positives = 537/890 (60%), Gaps = 91/890 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + S++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ + +  KY
Sbjct: 6   NNGDVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSFGAKY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E+++G  A+++NP+I L  +ME I+ PDFPTG +I G+ GI +AY TGRG I +R
Sbjct: 186 PHNPTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIEK  G+R+ IV+ E+PYQVNKA ++E +A LV++K I  ++++RDESDR G RVV
Sbjct: 246 AKTHIEK-KGNRDVIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRDGMRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ TS+Q+ F + M+++   +P  F LI ILK F+  R+ +++R
Sbjct: 305 IELKRDAISEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGLIDILKHFINHRKTIIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL  A+  +D+V+R+IR S   E A+  L+             
Sbjct: 365 RTIFDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSE----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE+Q  +I+ +RL RLTGL  + I NEL  L   I+    IL
Sbjct: 414 ---------------FDFSEIQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S   L GII +E   V     T RRT I +   D++ ED I  E MVVT++H GY+KRV
Sbjct: 459 KSEDVLHGIIAEEFDEVLTTYTTKRRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y  Q+RGGKG++ V   ++DF+ + F  +TH ++LF +  G ++  KV+R+P GS 
Sbjct: 519 PLASYEKQKRGGKGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I +I+P  +      +  +VF TK+G V+R  LS+F  I  +
Sbjct: 579 TAKGKAVVNLINLQADEQIQSIIPTTDFS---EDKSLVFFTKNGIVKRTNLSEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  D +++ +   +    + + TKL QC++F I   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTRE-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+V+   I+   D                                            
Sbjct: 695 HEGDEVVDANIIASDD-------------------------------------------- 710

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVN 848
                   Q IL V+EKG GKRT + ++R++NR G G+ A  ++   + G  +V    V+
Sbjct: 711 --------QEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYIVGCLMVD 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++  ++ ++  G +IRV +  I  +SR T GV I      + VVS+ R  
Sbjct: 761 ESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDEVVSISRCP 807


>gi|32475579|ref|NP_868573.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32446121|emb|CAD75950.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 1003

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/888 (39%), Positives = 512/888 (57%), Gaps = 33/888 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +    K VKC
Sbjct: 105 RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 164

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+ISG+  G YHPHG + IY  L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R
Sbjct: 165 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 224

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  +LDDL  DTVD+ P YD +  EP VL +++PN+L+NG GGIAVGMAT+IP HN
Sbjct: 225 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 284

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             EV D  + +I+ PD  +D L EII GPDFPTG +I GR G++  Y TGR ++V+R   
Sbjct: 285 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARC 344

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313
            IE+  G+R +IVVTEIPYQ  +  ++EKIA LV   RI  I+ +RDESD ++  R+V+E
Sbjct: 345 QIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVE 404

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG   DVILNQLY+++ LQ  FS+  +AL   KP   TL  +L  F+  R  V+ RRT
Sbjct: 405 LKRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRT 464

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
           ++LL +AR R H + GL +A+AN+DE+++ IR S     A+  LM  +  AS ++  +  
Sbjct: 465 QFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGD 524

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +         G   +  L+ VQT  IL +RL +L  L ++ +  E   L  EI + +DIL
Sbjct: 525 EGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYIDIL 584

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
            S SR+ GIIK++L  +K      RRT I      +++ ED I  E MVV++SH GY+KR
Sbjct: 585 GSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYIKR 644

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P SVY  QRRGGKG  G    +ED +  LF+ STH  +LFF++ G V  +KV+ +P  +
Sbjct: 645 TPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQLA 704

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+A++N+L + +GE+I   +   +         +V  TK G V++  L  + +  R
Sbjct: 705 RDAKGRAIVNLLQMEEGEQIAECLAVRDFN--QPGHTIVMTTKSGLVKKTPLEQYSRPKR 762

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+KL   DE++        ++I++ T  G  +RF  S  R   GRN+ GV+GISL 
Sbjct: 763 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSGVKGISLV 821

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+ M +                  +     ++  +E      ++   +        
Sbjct: 822 GDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEA------ 875

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                        +  G      S  +R   R GKG+R    SK N  G ++ +  VND+
Sbjct: 876 ------------ATASG------SARYRTQKRGGKGLRDIKTSKRN--GKVIGIARVNDD 915

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D++ L++ KG L R+   +I +  R T+GV I +  + + +++V R+ 
Sbjct: 916 DELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRVP 963



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 531  DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            D       +V  +  G VK+ PL  Y   +RGG     + +R+ D + D  +V     ++
Sbjct: 732  DFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRGG--IIAIKLREGDELVDAAVVGPGDEII 789

Query: 591  FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV- 649
              +S G   + +            G   I+++  +    +    P     +   N Y   
Sbjct: 790  MVTSDGMAIRFRESDSRPMGRNTSGVKGISLVGDDAVVGMVVTDPEATLLTVCKNGYGKR 849

Query: 650  --FATKHGNVRRNKLS-----------------DFIQINR--SGKIAMKL-DSRDEILSV 687
              F     +V                        +    R   G   +K      +++ +
Sbjct: 850  TPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIGI 909

Query: 688  ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                 ++++ L T  G+  R     I V  GRN+ GVR +++ +GD++I++  V   +  
Sbjct: 910  ARVNDDDELFLMTAKGKLQRISAGDINVI-GRNTQGVRIMNVDEGDELIAVVRVPAEENA 968

Query: 748  YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
             +        ++          E     + D++ E
Sbjct: 969  EEAAEAEATAVAEPVAETDASPEADAGSETDAAPE 1003


>gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187]
 gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165]
 gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1]
 gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2]
 gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2]
 gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1]
 gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1]
 gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2]
 gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1]
 gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2]
 gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1]
 gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2]
 gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4]
 gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3]
 gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1]
 gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1]
 gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1]
 gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2]
 gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1]
 gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2]
 gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2]
 gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3]
 gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2]
 gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1]
 gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2]
 gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3]
 gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1]
 gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2]
 gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2]
 gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2]
 gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1]
 gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1]
 gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2]
          Length = 891

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/930 (37%), Positives = 506/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +     
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S    + V  +    E  + +E   ES E
Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  Y + R+ G         ++D +      S    VL  S  G   +  
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                   P  R  + +  +     + + ++     D    ++ +V  AT  G  +R  +
Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754

Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  +S +    GR
Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +++GV+ +S+  GD V  +A+      + +     ++ +               S   D 
Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGGVVRRSDTVDD 873

Query: 780 SVEGNISEERCQELKLKE 797
               + +    +     E
Sbjct: 874 DRAVDTAGNDMKPEDNGE 891


>gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
 gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4]
          Length = 806

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/892 (39%), Positives = 548/892 (61%), Gaps = 88/892 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +  I    +  EM+++YL Y+++VI+ RA+PD+RDGLKPVHRRI++GM Q G+  ++
Sbjct: 2   TERKLNIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY K AR+ GEVMGKYHPHG+ AIYDA+ R+AQD+++R  L++GQGNFGS+DGD  AA R
Sbjct: 62  KYSKSARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF+ NYDG  QEPVVL +R+PN++VNG  GIAVGMATN
Sbjct: 122 YTELRMDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE +D  +A IDNP+I ++ LM+ I+ PDFPTG  I+G   +KNAY TGRG + 
Sbjct: 182 MAPHNLGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIMGLEEVKNAYTTGRGKVR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE++   R +I+VTEIPYQVNK+ +++KIA+LV++K+I  I+DLRDESDR+G R
Sbjct: 242 LRAEARIEESK-GRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A+ +++LN LY+YT +Q+ F +  +AL    P+  TL  ++  ++  +E VV
Sbjct: 301 IVIETKRDANPNIVLNNLYKYTQMQTTFGIINLALVNGVPKVLTLKQLIDHYLVHQEIVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA+ R H++ GL  A+ N+DE++ IIR S +   A  +LM+R         
Sbjct: 361 RRRTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYD--DALEKLMER--------- 409

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE+Q +AIL++RL RL GL ++ ++NE + L   I++  +
Sbjct: 410 -----------------FGFSEIQAQAILDMRLKRLQGLEKEKLQNEFDELSALIEKLTE 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++R  LL IIK EL  ++ +    RRT+I+    D ED + +  EDM +T+++ GY+K
Sbjct: 453 ILNNRHMLLEIIKDELSEIRTKYADDRRTKILRDDGDFEDMELLEEEDMFITITNKGYIK 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+    Y+ Q RGG+G + + M+D DF+ D+F  +TH  +LFF++ G VY  K + +P  
Sbjct: 513 RISTDAYKVQHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ ++  E +T ++    D+   N+ +++F TK G V++  LS +  I 
Sbjct: 573 SRTARGSNIINLIQIDADENVTQVLAL--DKEKENDQFIIFITKKGKVKKTSLSLYENIR 630

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G IA+K D  DE++ V+   +  ++++ TK G  ++F +  +R  + RN++GV+ I+L
Sbjct: 631 KTGIIAIKFDEGDELIDVKLVEKNEEVIIVTKKGMSLQFNVDQLRDLS-RNAIGVKAITL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+VIS  +V   +                                            
Sbjct: 690 NKDDEVISFDLVKDNE-------------------------------------------- 705

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    F+  +SE G+GK+T   ++   NR GKGIR   ++K  + G +     +  
Sbjct: 706 ---------FLAVISENGYGKKTELSNYTTQNRGGKGIRTYKIAK--KTGDVACAKALKK 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRES 900
            D+I+L+S +  +IR+    I   SR+T GV++ +T K  + +V+V +  E 
Sbjct: 755 EDEILLISKQAEVIRIKAEGISTLSRSTSGVLLKNTDKGEDAIVAVAKYFEE 806



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERIC 753
             T  G   R    A +V   R   GV  + +  GD +  M                ++ 
Sbjct: 504 TITNKGYIKRISTDAYKV-QHRGGRGVNAMGMKDGDFIKDMFATTTHQDLLFFTNKGKVY 562

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +K         +     I +L    + E         + K  +QFI+ +++KG  K+TS
Sbjct: 563 SLKAYEVPEASRTARGSNIINLIQIDADENVTQVLALDKEKENDQFIIFITKKGKVKKTS 622

Query: 814 SYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              +   R +     GI A    +      L+ V  V  N+++I+V+ KG  ++  V+++
Sbjct: 623 LSLYENIRKT-----GIIAIKFDEG---DELIDVKLVEKNEEVIIVTKKGMSLQFNVDQL 674

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESE 901
           R  SR   GV   +  KD+ V+S + ++++E
Sbjct: 675 RDLSRNAIGVKAITLNKDDEVISFDLVKDNE 705


>gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 821

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/839 (42%), Positives = 518/839 (61%), Gaps = 35/839 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD +++  I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  
Sbjct: 2   SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA
Sbjct: 62  DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K +  LL D+ K+T+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV+DG +A+  NP+I +  LME I GPDFPT  +ILGR+GI+ AY TGRGS
Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLILGRSGIRRAYETGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R    IE+ +  R+ I+VTEIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR+G
Sbjct: 242 ITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRRG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  ++ 
Sbjct: 302 LRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVDGEPKVLNLKQTLYYYLEHQKV 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ L++R       
Sbjct: 362 VIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIER------- 414

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q +AIL++RL RLTGL R+ I  E   L   I E 
Sbjct: 415 -------------------FALSEKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAEL 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLG 546
             IL+   ++L II++EL  VK+  +  RRT I   G+  +EDED I  +++ +T++H G
Sbjct: 456 KAILADEEKVLEIIREELTEVKERFNDERRTEITIGGIESIEDEDLIPEQNIAITLTHNG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +L+F++ G VY+ K + +
Sbjct: 516 YIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVYRTKGYEI 575

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  A+G  +IN+L +++ E +  I+P  E     ++ ++ F TK G  +R  LS F 
Sbjct: 576 PEYSRTAKGIPIINLLEVDKDEWVNAIIPIREFG---DDQFLFFTTKQGISKRTPLSSFS 632

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GRN+ GV+ 
Sbjct: 633 NIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKA 691

Query: 727 ISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I+L + D V+ M IV    +     +  Y K    +   I     +     N +   G +
Sbjct: 692 ITLDEDDHVVGMEIVEENMNVLIVTKNGYGKRTPIEEYRIQSRGGKGLKTCNITEKNGKL 751

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
              +       E+ I+ ++  G   R          R+ +G+R   +    E+  +   
Sbjct: 752 VAVKSV---TGEEDIMLITAAGVIIRMPVEQISQMGRNTQGVRLIRLEDDQEVATVAKA 807


>gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
 gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40]
          Length = 886

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 373/846 (44%), Positives = 525/846 (62%), Gaps = 19/846 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K
Sbjct: 6   KEILPVTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K +H LL DL K+TVDF PNYDG+   P VL  R PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKISHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ GC+A+IDNP+I +D LME I GPDFPTGA+I GR GI  AY TGRG I +R  
Sbjct: 186 NLREVIKGCLALIDNPEITIDELMEHIPGPDFPTGAIINGRAGILQAYRTGRGRIYVRAQ 245

Query: 254 SHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           + +E      RE IV+ EIPYQVNKA ++EKIAELV+EK+I  I+++RDESD+ G RVV+
Sbjct: 246 AEVETNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+KRG   +V+LN LY  T LQ++F +N+VAL   +P+   L  +L+ FV  R EVV RR
Sbjct: 306 EIKRGEMGEVVLNNLYAQTQLQNVFGINIVALVDDQPKLLNLKELLEYFVKHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T YLL KAR+R HVL G A+A+AN+DEV+ +I+ SP P  AR  ++ R W    + + +D
Sbjct: 366 TVYLLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLD 425

Query: 433 LIDDSSYTIG---------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              +++              DG+ YLS VQ +AIL+LRL RLTG+  D +  E     I+
Sbjct: 426 RAGENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQ 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   L+IL +  RL+ +I++EL  + ++    RRT I + + D+  ED I  ED VVT+S
Sbjct: 486 IAGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTIS 545

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY K  PL  Y+AQRRGG G++   ++DEDFV  L I +TH  +L F+S+G V+  KV
Sbjct: 546 HGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKVFWLKV 605

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P+   Q+RG+ ++N+L L +GERIT+I+P  E +   ++ ++  AT  G V++  LS
Sbjct: 606 YQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFD---DDHFIFMATADGTVKKTPLS 662

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G  A+ L   D ++         DI+L T  G+  RF    +R   GR S G
Sbjct: 663 QFARPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSM-GRVSRG 721

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG+ +A    VI+M +                  +      +        +    S   
Sbjct: 722 VRGVRMADDVSVIAMVVPEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSERN 781

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                  Q  +  E  I+ +S +G   RT + +  +S R+ +G+R   V +      +V 
Sbjct: 782 GCLVGATQVFEGDE--IMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEGE---HIVG 836

Query: 844 VFPVND 849
           +  +++
Sbjct: 837 LERIDE 842



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 69/161 (42%), Gaps = 6/161 (3%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A Y E +   + +    R            +  + ++ ++++   ++L  +E  ++T+S 
Sbjct: 487 AGYLEILGNPERLMNVIREELEVIYNDYGDERRTVIQQSMTDLTHEDLISEEDRVVTISH 546

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G+ K      ++   R G G  AT V   + +  L      N +D ++  +  G +  +
Sbjct: 547 GGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHL---LIANTHDYLLCFTSVGKVFWL 603

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            V +I +A R ++G   V +    + ER+ S+  +RE +  
Sbjct: 604 KVYQIPVAGRQSRGRPVVNLLPLEEGERITSILPVREFDDD 644



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 15/257 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PLS +   R  G     +V  D    T +        ++  
Sbjct: 641 FDDDHFIFMATADGTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAI--TDGTKDIILL 698

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +S G   +     +      +RG   +         R+   +             V+  +
Sbjct: 699 TSAGKAARFSEENVRSMGRVSRGVRGV---------RMADDVSVIAMVVPEEGGKVLTVS 749

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R +++++    R   G IAM++  R+   +      + ++I+L +  G  VR  
Sbjct: 750 ENGFGKRTEVTEYPAKGRGSQGVIAMQMSERNGCLVGATQVFEGDEIMLISNQGTLVRTR 809

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +   +GRN+ GVR I + +G+ ++ +  +                +       +   
Sbjct: 810 ADEV-SLSGRNTQGVRLIRVKEGEHIVGLERIDEPPVPEAVEGGEESAVVENTADANEAN 868

Query: 770 EEITSLKNDSSVEGNIS 786
                +           
Sbjct: 869 VNAPDVSGADEDATGDD 885


>gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1]
          Length = 902

 Score =  810 bits (2093), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/930 (37%), Positives = 507/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP    +ARG  +  +LS    E+I  +M     +     
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGREARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S    + V  +    E  + +E   ES E
Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 90/247 (36%), Gaps = 7/247 (2%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  Y + R+ G         ++D +      S    VL  S  G   +  
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                   P  R  + +  +     + + ++     D    ++ +V  AT  G  +R  +
Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754

Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  +S +    GR
Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +++GV+ +S+  GD V  +A+      + +     ++ +               S   D 
Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGGVVRRSDTVDD 873

Query: 780 SVEGNIS 786
               + +
Sbjct: 874 DRAVDTA 880


>gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
 gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP]
          Length = 808

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/889 (39%), Positives = 512/889 (57%), Gaps = 85/889 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ MM  G+  N K+ K 
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+++IYDA+ R+ Q W++R  ++  QGNFGS+DGDPPAA RYTE R
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  LL DL K+T+  +PNYD + +EP VL A  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID P++ L  +ME ++GPDFPTG  I  + GI++AY TG  S+ +RG +
Sbjct: 183 LTEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRIS-KQGIQDAYTTGHASLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE+   +R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +  R+VIE
Sbjct: 242 RIEE-KNNRSQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQS F+V  +++   +P    LI  ++ F+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQSTFTVINLSIVNGEPRVLPLIDTMRYFLDHRRDVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAH+L GL  A+ ++DEV+ +IR S     AR  LM R             
Sbjct: 361 QYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMAR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL++RL RL GL R+ + +E + L   I +   IL  
Sbjct: 408 -------------FELSEPQAQAILDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+  ++D     RR+ I     D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 EKLLWREIKKEIREIRDRYGDERRSTISALEEDISKEDLIAVEDMVITMTEAGYLKRTTL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G  G  +R+ED  T +F+ STH  +LFF+  G ++ EK++ LP  +  A
Sbjct: 515 DAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRLFHEKIYDLPEAARDA 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N+L          I               VFATK+G V+R  ++D+  I  +G 
Sbjct: 575 KGSHIRNLLP--SLRDDENIASVQSIRGFEEEGSFVFATKNGMVKRTLITDYGNITSAGL 632

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ L   DE++SV      +DI+L T+ G+ +RF    +R   GR + GV GI L   D
Sbjct: 633 IAINLQEDDELISVGIVKNGSDIVLATRGGKAMRFAADEVRD-TGRATQGVIGIRLKGDD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +V+SMA+V                                                    
Sbjct: 692 RVVSMALVP--------------------------------------------------- 700

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              E  +L +SE G GKRT   D+    R G+G+   DV++  + G LV +  V+  +++
Sbjct: 701 ADTESELLAISEHGLGKRTPVSDYPSKGRGGQGVITLDVTE--KTGRLVTLARVDGGEEL 758

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++++  G +IR  V E+R+  R  +GV + + +  +RV+S   IR+ + 
Sbjct: 759 MVLTQGGLVIRTRVEEVRVTGRNAQGVKVINLSDKDRVISAFPIRKEDE 807



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 56/260 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  T+ G ++R  L  +   +R G+ +   KL   D    V   +  + +L  T  G+ 
Sbjct: 500 VITMTEAGYLKRTTLDAYRAQSRGGRGSRGGKLREEDVNTRVFVGSTHDYMLFFTDQGRL 559

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
               I  +   A R++ G                                          
Sbjct: 560 FHEKIYDL-PEAARDAKG------------------------------------------ 576

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSG 824
                 I +L      + NI+  +      +E   +  ++ G  KRT   D+  I++   
Sbjct: 577 ----SHIRNLLPSLRDDENIASVQSIRGFEEEGSFVFATKNGMVKRTLITDYGNITS--- 629

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+ A ++ +      L++V  V +   I+L +  G  +R   +E+R   RAT+GV+   
Sbjct: 630 AGLIAINLQE---DDELISVGIVKNGSDIVLATRGGKAMRFAADEVRDTGRATQGVIGIR 686

Query: 885 TAKDERVVSVERIRESEIVD 904
              D+RVVS+  +      +
Sbjct: 687 LKGDDRVVSMALVPADTESE 706


>gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2]
          Length = 891

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/930 (37%), Positives = 508/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +   + 
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S   D+ V  +    E  + +E   ES E
Sbjct: 821 VSVRGDDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 7/268 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  L  Y + R+ G         ++D +      S    VL  
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +          P  R  + +  +     + + ++     D    ++ +V  AT
Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  
Sbjct: 745 GGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +    GR+++GV+ +S+   D V  +A+      + +     ++ +           
Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGD 863

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
               S   D     + +    +     E
Sbjct: 864 VVRRSDTVDDDRAVDTAGNDMKPEDNGE 891


>gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
 gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989]
          Length = 822

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/893 (38%), Positives = 538/893 (60%), Gaps = 85/893 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  + +    +  V I+ EM+ ++L Y+++VI+ RA+PD+RDG+KPVHRRIL  M Q+G+
Sbjct: 1   MEEENKRYDYVEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                + K ARI GEV+GKYHPHG+ A+YDA+ RMAQD+S R  L++G GNFGS+DGD  
Sbjct: 61  TSGVAHKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  ++ D+ KDTVDF PNYDG   EPVVL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL E +    AV+DNPDI +  LME+I+GPDFPTG +ILGR GI+ A+ TGR
Sbjct: 181 MATNIPPHNLSETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIILGRKGIRQAFETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI+IR    +E+ +  ++QI+  EIPYQVNKA ++ K+A L+R+K I  +  L DES+R
Sbjct: 241 GSIMIRSKYRVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+ A  +VILNQL+R T LQ+ F +NM+AL   +P++  L  I+  ++  +
Sbjct: 301 EGIRIVMELKKDAQEEVILNQLFRLTPLQTSFGINMLALENGRPKQLPLKDIIHDYIDHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +VVVR+T++ L KA+DRAH+L GL IA+ ++DEV+ +IR S                  
Sbjct: 361 VDVVVRKTQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSK----------------- 403

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                    D++  +        LS +Q +AIL ++L RL+GL RD I NE   L + I+
Sbjct: 404 --------KDEAGLSQDLCDAFGLSMIQAKAILAMQLRRLSGLERDKIENEYQQLLLTIE 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL++  R+L II+ +L  +  +    RRT I +  +DMEDED I  ED+++T++  
Sbjct: 456 DLKDILANHDRVLQIIRDDLNEIDQKYGDERRTEISDASVDMEDEDLIPVEDVIITLTES 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  +  YRAQ RGG+G   + + +ED +  +  +STH  +L F+  G VY+ K + 
Sbjct: 516 GYIKRQLVDTYRAQNRGGRGIKSLTLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYN 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  ++G  ++N+++L +GE++  ++  P+D+    +  ++F TK+G V+R  +S+F
Sbjct: 576 VPSGSRTSKGIPIVNLMTLEKGEKVNVLVAVPKDD---ESETLLFVTKNGIVKRTSVSEF 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             INR+GKIA+ L   DE+  V+  T +++++++   G+ VRF    +R+  GR++ GV 
Sbjct: 633 ENINRNGKIAISLKPDDELRFVKLTTGQDEVIISGSNGKAVRFNEDQVRIM-GRSASGVL 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   G +V+  A+    D                                        
Sbjct: 692 GFN-CDGSEVVGAALSSEGDT--------------------------------------- 711

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L VSE G+GKR+   D+R+++R  KG+   ++++  + G L+ + 
Sbjct: 712 --------------VLVVSENGYGKRSKFEDYRLTSRGKKGVSTINITE--KTGKLMCMR 755

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            V   +  ++V+  G +IRV +  + I  R T+GV + +   D +V  +  + 
Sbjct: 756 AVTGKEDAMIVASDGIMIRVALENVGIYGRNTQGVRLINLNGDAKVTRMTLVD 808


>gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099]
 gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099]
          Length = 846

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/900 (39%), Positives = 510/900 (56%), Gaps = 84/900 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +    + E + + +V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSSDVPDPTDVEARAVENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + I GE MG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 61  HEMGVTSRSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSM 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+   +  LL+D+ KDTVDF  NYD   QEP VL + +PN+LVNG  
Sbjct: 121 DGDPAAAPRYTEARMAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGEV+D  + +ID+PD  ++ LME ++GPDFPTGA I+GR  I +A
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIVGRDAIYSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R    +E+    RE+IV+TE+PYQ NKA ++E+IAE V E  I  I+DLR
Sbjct: 241 YKTGRGRIRVRAEFEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V+E KRGA+ +V+ N+L     L+  F V  +AL   +P+  +L   L+ 
Sbjct: 301 DESDRDGVRIVVECKRGANVEVVKNKLLE-NHLEKTFGVINLALVDGQPQVLSLKETLEE 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A R EVV RR++Y L +A DRAH+L G   AV N ++VV +IR S   + A+  L + 
Sbjct: 360 YIAHRREVVRRRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQE- 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S  Q   I+ ++L  LT +   +I +E   +
Sbjct: 419 -------------------------AYDFSAEQATHIVRMQLGSLTSMEAAEIEDEYEDV 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+    IL S   LL +IK EL  +KDE D  RRT I+E    +  ED I  E++ V
Sbjct: 454 QAEIERLTSILESEQELLAVIKDELSEIKDEYDDDRRTSIIEDQGTVTHEDLIPEEEVFV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   YVKR+P+S +  Q RGGKG  G  ++++D V  +F  +TH  +L F++ G VY+
Sbjct: 514 VMTEDDYVKRMPISQFDPQGRGGKGIIGADVKEDDRVATVFRANTHDYLLCFTNQGKVYQ 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P     ARGK+ +NIL L+ GE IT I+         ++ +V  AT+HG V+R 
Sbjct: 574 LKTYEIPEMGRTARGKSAVNILDLDPGEDITAIVDTDAFG---DDEFVTMATRHGYVKRT 630

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S+F  I  +G IA  L   DE++ VE      D+++ ++ G  +RF    +R   GRN
Sbjct: 631 AGSEFDNIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAM-GRN 689

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D V  +      D                                   
Sbjct: 690 ARGVNGIDLQGDDAVAGLVATDEGD----------------------------------- 714

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           EQ +LTV++ G+GKRT   ++R  +R GKG+      + N  G 
Sbjct: 715 ----------------EQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERN--GP 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +     V+ +DQ++++S++G ++R  V+EI    R T GV++      + V SV+ +  +
Sbjct: 757 VTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVPAA 816


>gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1]
          Length = 891

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/930 (37%), Positives = 506/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +     
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S    + V  +    E  + +E   ES E
Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  Y + R+ G         ++D +      S    VL  S  G   +  
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                   P  R  + +  +     + + ++     D    ++ +V  AT  G  +R  +
Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754

Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  +S +    GR
Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +++GV+ +S+  GD V  +A+      + +     ++ +               S   D 
Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVADESVETVEGDATQAQSGEVVRRSDTVDD 873

Query: 780 SVEGNISEERCQELKLKE 797
               + +    +     E
Sbjct: 874 DRAVDTAGNDMKPEDNGE 891


>gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1]
 gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2]
 gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1]
 gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 891

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/930 (37%), Positives = 508/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +   + 
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S   D+ V  +    E  + +E   ES E
Sbjct: 821 VSVRGDDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 7/268 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  L  Y + R+ G         ++D +      S    VL  
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +          P  R  + +  +     + + ++     D    ++ +V  AT
Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  
Sbjct: 745 GGGYAKRTAVSEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +    GR+++GV+ +S+   D V  +A+      + +     ++ +           
Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEVADESVETVEGDATKAQSGD 863

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
               S   D     + +    +     E
Sbjct: 864 VVRRSDTVDDDRAVDTAGNDMKPEDNGE 891


>gi|327542890|gb|EGF29346.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 979

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/888 (39%), Positives = 512/888 (57%), Gaps = 33/888 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + I DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +    K VKC
Sbjct: 81  RMVDLPIEDELRESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLGPGSKRVKC 140

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+ISG+  G YHPHG + IY  L RMAQ+W++R LLI+ QGNFGSV G PPAA RYTE R
Sbjct: 141 AKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRCLLIDKQGNFGSVAGLPPAAMRYTEAR 200

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  +LDDL  DTVD+ P YD +  EP VL +++PN+L+NG GGIAVGMAT+IP HN
Sbjct: 201 MGAVAAAMLDDLKLDTVDYIPTYDEARTEPTVLPSKFPNLLINGSGGIAVGMATSIPPHN 260

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             EV D  + +I+ PD  +D L EII GPDFPTG +I GR G++  Y TGR ++V+R   
Sbjct: 261 PTEVCDALIKLIEEPDTSIDELCEIIPGPDFPTGGIICGRAGVRRGYKTGRSTMVVRARC 320

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIE 313
            IE+  G+R +IVVTEIPYQ  +  ++EKIA LV   RI  I+ +RDESD ++  R+V+E
Sbjct: 321 QIEEMKGNRHRIVVTEIPYQQYRDRIIEKIAALVNGDRIKGISGIRDESDLKEPVRLVVE 380

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG   DVILNQLY+++ LQ  FS+  +AL   KP   TL  +L  F+  R  V+ RRT
Sbjct: 381 LKRGEDPDVILNQLYQFSPLQDTFSLIFLALVDGKPRELTLKEMLAEFLRHRVTVIRRRT 440

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI-- 431
           ++LL +AR R H + GL +A+AN+DE+++ IR S     A+  LM  +  AS ++  +  
Sbjct: 441 QFLLARARRRKHTVEGLLLALANIDEIIQTIRTSRTQPEAKERLMGIACPASMMQRALGD 500

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +         G   +  L+ VQT  IL +RL +L  L ++ +  E   L  EI + +DIL
Sbjct: 501 EGFKQFQLERGEADSYTLTSVQTDEILRMRLGQLVNLEQEKLSGEHAELLKEIIDYIDIL 560

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
            S SR+ GIIK++L  +K      RRT I      +++ ED I  E MVV++SH GY+KR
Sbjct: 561 GSPSRINGIIKEDLEEMKRRFGDKRRTEISHEELGNIDLEDLITEETMVVSISHRGYIKR 620

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P SVY  QRRGGKG  G    +ED +  LF+ STH  +LFF++ G V  +KV+ +P  +
Sbjct: 621 TPTSVYNTQRRGGKGMKGAKSDNEDPIEHLFVASTHAYLLFFTTAGKVRWQKVYDIPQLA 680

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G+A++N+L + +GE+I   +   +         +V  TK G V++  L  + +  R
Sbjct: 681 RDAKGRAIVNLLQMEEGEQIAECLAVRDFN--QPGHTIVMTTKSGLVKKTPLEQYSRPKR 738

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G IA+KL   DE++        ++I++ T  G  +RF  S  R   GRN+ GV+GISL 
Sbjct: 739 GGIIAIKLREGDELVDAAVVGPGDEIIMVTSDGMAIRFRESDSRPM-GRNTSGVKGISLV 797

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V+ M +                  +     ++  +E      ++   +        
Sbjct: 798 GDDAVVGMVVTDPEATLLTVCKNGYGKRTPFGPNLADVSETDADESSEGGDDEA------ 851

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                        +  G      S  +R   R GKG+R    SK N  G ++ +  VND+
Sbjct: 852 ------------ATASG------SARYRTQKRGGKGLRDIKTSKRN--GKVIGIARVNDD 891

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D++ L++ KG L R+   +I +  R T+GV I +  + + +++V R+ 
Sbjct: 892 DELFLMTAKGKLQRISAGDINVIGRNTQGVRIMNVDEGDELIAVVRVP 939



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D       +V  +  G VK+ PL  Y   +RGG     + +R+ D + D  +V     ++
Sbjct: 708 DFNQPGHTIVMTTKSGLVKKTPLEQYSRPKRGG--IIAIKLREGDELVDAAVVGPGDEII 765

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV- 649
             +S G   + +            G   I+++  +    +    P     +   N Y   
Sbjct: 766 MVTSDGMAIRFRESDSRPMGRNTSGVKGISLVGDDAVVGMVVTDPEATLLTVCKNGYGKR 825

Query: 650 --FATKHGNVRRNKLS-----------------DFIQINR--SGKIAMKL-DSRDEILSV 687
             F     +V                        +    R   G   +K      +++ +
Sbjct: 826 TPFGPNLADVSETDADESSEGGDDEAATASGSARYRTQKRGGKGLRDIKTSKRNGKVIGI 885

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                ++++ L T  G+  R     I V  GRN+ GVR +++ +GD++I++  V   +  
Sbjct: 886 ARVNDDDELFLMTAKGKLQRISAGDINVI-GRNTQGVRIMNVDEGDELIAVVRVPAEENA 944

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            +        ++          E     + D++ E
Sbjct: 945 EEAAEAEATAVAEPVAETDASPEADAGSETDAAPE 979


>gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449]
 gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449]
          Length = 824

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/901 (39%), Positives = 531/901 (58%), Gaps = 89/901 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E     V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ +   + Y 
Sbjct: 6   EDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPRRPYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+  A+  +L D+ KDTV+F PNYD +  EP VL  R+PN+LVNG  GIAVGMAT+IP 
Sbjct: 126 ARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMATSIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  + VID    D++ L++I++GPDFPTG +I G+ GI  AY TGRG I +R 
Sbjct: 186 HRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIYGKAGILEAYRTGRGRIRVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             HIEKT   ++ IV+ E+PYQVNKA ++E+I+EL +EK I  I+++RDESDR+G RVVI
Sbjct: 246 KVHIEKTKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREGIRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F + ++A+N  +P+ F L+ +L+ F+A R+ +++RR
Sbjct: 305 ELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L KA+ RAH+L GL IA+ N+DEV++ IR S + + A+  L+ +            
Sbjct: 365 SIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AILE+RL RLTGL RD I  E   L  +I     IL 
Sbjct: 413 --------------FKLSELQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILK 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L  I+K+ELL +K++  T RRT+I E    ++ ED I  E +VVT+SH GYVKRV 
Sbjct: 459 SEDKLKSIVKEELLEIKEKFSTKRRTQIEEDYDAIDVEDLIPNEKVVVTMSHRGYVKRVL 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  Q RGGKG+      D+DF+   F+ +TH +++F ++ G +Y  KV+++P     
Sbjct: 519 LKTYEKQNRGGKGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L   E+I   +   +      +  +VF TK+G V+R  L ++  I   G
Sbjct: 579 AIGKAVVNLINLQADEKIMATITTTDFN---EDKSLVFFTKNGVVKRTNLKEYGNIRSIG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ LD  DE+++         ++ + T  G C+RF +  +R   GR S GV GI    
Sbjct: 636 VRAINLDENDELVTAHIVDSHIKELFIATYQGMCIRFGVEELREI-GRVSRGVTGIKFKA 694

Query: 732 -GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI+   + +                                               
Sbjct: 695 SEDCVIAATTIANDTDK------------------------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LTVSE+G GK+T + ++R+ +R+GKG+    ++     G LV+V  +ND 
Sbjct: 712 ---------LLTVSERGIGKQTLAGEYRLQSRAGKGVIVMKLTPR--TGKLVSVVNINDE 760

Query: 851 D-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +  +++++  G +IRV    IR A R T GV I +   D++V       +    ++    
Sbjct: 761 NMDLMVLTSSGKMIRVDTEAIRKAGRNTSGVKIVNVG-DDKVAYANVCPKEPKEEDINDE 819

Query: 910 E 910
           E
Sbjct: 820 E 820


>gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1]
 gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1]
 gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3]
 gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1]
 gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3]
 gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2]
 gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1]
          Length = 891

 Score =  810 bits (2092), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/930 (37%), Positives = 506/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +     
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---GA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDEA--ESTE 910
            S    + V  +    E  + +E   ES E
Sbjct: 821 VSVRGGDAVSIIAVNPEHTVEEEVAYESVE 850



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 92/258 (35%), Gaps = 7/258 (2%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  Y + R+ G         ++D +      S    VL  S  G   +  
Sbjct: 638 TRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLISRKGQAIRFS 696

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                   P  R  + +  +     + + ++     D    ++ +V  AT  G  +R  +
Sbjct: 697 AGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTATGGGYAKRTAV 754

Query: 663 SDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  +S +    GR
Sbjct: 755 SEYRQQGRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEV-PAKGR 813

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +++GV+ +S+  GD V  +A+      + +     ++ +               S   D 
Sbjct: 814 STMGVKFVSVRGGDAVSIIAVNPEHTVEEEVAYESVETVEGDATQAQSGGVVRRSDTVDD 873

Query: 780 SVEGNISEERCQELKLKE 797
               + +    +     E
Sbjct: 874 DRAVDTAGNDMKPEDNGE 891


>gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994]
 gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994]
          Length = 830

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/889 (39%), Positives = 533/889 (59%), Gaps = 89/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I D +++SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    KY
Sbjct: 6   DNSEINDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSAGAKY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+G+YHPHG+ ++YDAL RMAQ +++R  L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + A  LL DL KDTVD   NYDG+ QEP VL  R PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV+   V ++DNP+  L  +M+ I+ PDFPTG  I G+ GI +AY TGRG I +R
Sbjct: 186 PHNPNEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIYGKKGILDAYETGRGRIRVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIEK   +++ IV+ E+PYQVNKA ++E IA+LV++K I  I+++RDESDR+G RVV
Sbjct: 246 AKTHIEK-KSNKDVIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN LY+ T++++ F + M+++   +P  FTL+ +L  F+  R+ V++R
Sbjct: 305 IELKRDAMSEIVLNNLYKSTNMETTFGIIMLSVFNQEPRVFTLLEMLGHFINHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL  A+ +++ ++++IR S + ETA+  L++            
Sbjct: 365 RTIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEE----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S +Q +AIL++RL RLTGL RD I NEL  +   I+    IL
Sbjct: 414 ---------------FGFSPIQAQAILDMRLQRLTGLERDKIENELKEILTHIEYLESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S   L GIIK+E + + ++ + PR T I +   D+  ED I  E MVVT+SH GY+KRV
Sbjct: 459 RSEEVLKGIIKEEFVELVEQYNIPRVTDIEDNYDDINIEDLIPNEPMVVTISHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ Y  Q RGGKG+  V   D+DF+   +  +TH +++F +  G ++  KV+++P GS 
Sbjct: 519 PLAAYEKQIRGGKGKVAVTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N+++L   E+I +I+P  + +       +VF T++G V+R  L++F  I  +
Sbjct: 579 TAKGKAVVNLINLEADEKIRSIIPTTDFD---EKKSLVFFTQNGIVKRTALNEFSNIRSN 635

Query: 672 GKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ LD  D +++    T+E   + + TK  QC++F I   R   GR++ GVRGI   
Sbjct: 636 GVRAIVLDEDDALITAHIATEETKYLFIVTKFAQCIKFEIDKTRD-QGRSTRGVRGIKFK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD V+   I+                                                
Sbjct: 695 IEGDVVVDANII------------------------------------------------ 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               K  E+ IL VSEKG GKRT++ ++R++NR+G G+ A  ++       +V    V++
Sbjct: 707 ----KSDEEEILMVSEKGIGKRTTAEEYRLTNRAGSGVIAMKLNAKTGT-TVVGCVMVDE 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
              ++ ++  G +IRV +  I  + R T GV I      + V S+ R  
Sbjct: 762 TMDLMALTKAGKMIRVDMQTIAKSGRNTSGVYIVK---GDDVASISRCP 807


>gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39]
 gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183]
 gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A
 gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
 gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae]
 gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 834

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/901 (37%), Positives = 522/901 (57%), Gaps = 91/901 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +++ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+ +    K
Sbjct: 3   NKDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++ Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSTYTTGRGKIKV 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+      E I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G R
Sbjct: 243 RARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+E+K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+
Sbjct: 303 VVLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++          
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +   +E Q  AILELRL +LTGL  + I+ E   L  +I     
Sbjct: 413 ----------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQ 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +LS    +  II+ EL  +       RRT I        + ED I  E +++T+S   YV
Sbjct: 457 VLSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +    + E  ++L T LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V+S  IV                                           
Sbjct: 693 GVSLKNEEDKVVSCQIVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        Q +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 712 ------------NQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            PV D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  D
Sbjct: 758 IPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDD 817

Query: 905 E 905
           E
Sbjct: 818 E 818


>gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51]
          Length = 828

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/913 (39%), Positives = 551/913 (60%), Gaps = 95/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V+ NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL G++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNGVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVER 896
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV    
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVVYANS 809

Query: 897 IRESEIVDEAEST 909
             + E  +  E++
Sbjct: 810 CPKEEEPENLENS 822


>gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296]
          Length = 876

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/909 (38%), Positives = 512/909 (56%), Gaps = 95/909 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++ 
Sbjct: 24  DHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRS 83

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA RY
Sbjct: 84  FNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRY 143

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATNI
Sbjct: 144 TETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNI 203

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HNL EV +G    + NP    +     LM  I+GPDFPTGA ILG  GI++AY TGRG
Sbjct: 204 PPHNLREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTKGIEDAYRTGRG 263

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
           SI +R V ++E+    R  +VVTE+PYQ N   +  KIAEL+++ ++  IADLRDE S R
Sbjct: 264 SITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGR 322

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VI LKR AS  V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  +
Sbjct: 323 TGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWVDHQ 382

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM+      
Sbjct: 383 MDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME------ 436

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + E Q +AIL ++L RL  L R  I++  + L   I 
Sbjct: 437 --------------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIA 476

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSH 544
           E   I++S +R   II +EL  + +     RRT+I+     DM  ED I  E++VVT++ 
Sbjct: 477 EYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVTITR 536

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K +
Sbjct: 537 GGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRAKGY 596

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L      A+G+ + N+L    GE I  +M     E   +  Y+V AT+ G V++++LSD
Sbjct: 597 ELQEAGRDAKGQHIANLLEFQGGEHIAQVMELKSYE---DAEYLVLATRGGMVKKSRLSD 653

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSV 722
           +     +G IA+ L   DE++S  T + ++DILL ++ G  +RF      +R   GR++ 
Sbjct: 654 YDTNRTAGLIAINLREGDEVVSAFTVSDKDDILLVSRNGMSLRFHADDASLRPM-GRSTS 712

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+   +GD++IS  +V                                         
Sbjct: 713 GVTGMKFREGDELISANVVTEG-------------------------------------- 734

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                           F+  V+E G+ KRTS  ++R+  R+G GI+   + +  + GALV
Sbjct: 735 ---------------SFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVE--DRGALV 777

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V++ D++++V   G ++R  VNE+    R T GV+     K + ++ V R ++ ++
Sbjct: 778 GGLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQDRQL 837

Query: 903 VD-EAESTE 910
            D + E+TE
Sbjct: 838 DDSDDETTE 846



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 13/256 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                 + +V  +  G VK+  LS Y   R  G     + +R+ D V   F VS    +L
Sbjct: 629 KSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAG--LIAINLREGDEVVSAFTVSDKDDIL 686

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  + +  +   +G+ + +              +V  
Sbjct: 687 LVSRNGMSLRFHADDASL-RPMGRSTSGVTGMKFREGDELISANVVT------EGSFVFV 739

Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + ++     N  G    KL      ++      +E+++L+    G+ VR
Sbjct: 740 VTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVVR 799

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GR+++GV      KGD +I +A       D  +        +++     G
Sbjct: 800 SNVNEV-PAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDDETTENTEASESSEAPG 858

Query: 768 DTEEITSLKNDSSVEG 783
              E  +   D +  G
Sbjct: 859 TDNEGEAAAADLTATG 874


>gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029]
 gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
          Length = 834

 Score =  810 bits (2091), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/901 (37%), Positives = 523/901 (58%), Gaps = 91/901 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +++ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+ +    K
Sbjct: 3   NKDEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDPPAA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A +L++DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAMYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + ++ NP   +D +++++ GPDFPTG +I G  GI++AY TGRG I +
Sbjct: 183 PPHNLGELIEATLLLLANPQASVDEILQVMPGPDFPTGGIICGSEGIRSAYTTGRGKIKV 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+      E I++TE+PY VNK+ ++E+IA LV EK +  I+D+RDESD+ G R
Sbjct: 243 RARLHVEENEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+E+K+G S+++I+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R+EV+
Sbjct: 303 VVLEIKKGESSEIIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRKEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAHVL G   A++ LD +V+ IR S N E A+  +++          
Sbjct: 363 RRRTRYELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +   +E Q  AILELRL +LTGL  + I+ E   L  +I     
Sbjct: 413 ----------------SFGFTEPQALAILELRLYQLTGLEAEKIQKEYEELLNKIAYYKQ 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +LS    +  II+ EL  +       RRT I        + ED I  E +++T+S   YV
Sbjct: 457 VLSDEGLVKDIIRNELQDLLKHHKVARRTTIEFDADDIRDIEDIITNESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V++ QRRGG G +G  M+    F+  ++   T   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPVKVFKEQRRGGHGVTGFDMKKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE +  I+     +   N  ++  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEELAAILNIKNFD---NAGFLFLATKRGVVKKVSLDAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +    + E  ++L T LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDEGDELIAACHIVSDEEKVMLFTHLGMAVRFPHEKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V+S  IV                                           
Sbjct: 693 GVSLKNEEDKVVSCQIVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        Q +L V ++GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 712 ------------NQSVLIVCDQGFGKRSLVEDFRETNRGGVGVRSILINERN--GNVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            PV D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +VS+E++  +E  D
Sbjct: 758 IPVTDHDSILLMSSQGQAIRINMQDVRVMGRSTQGVRLVHLKEGDALVSMEKLSSNENDD 817

Query: 905 E 905
           E
Sbjct: 818 E 818


>gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 910

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/924 (37%), Positives = 516/924 (55%), Gaps = 102/924 (11%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M      ++E+   ++  +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI+
Sbjct: 23  MEPISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIV 82

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   ++ Y KCAR   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNF
Sbjct: 83  YAMYDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNF 142

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS   DPPAA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L N
Sbjct: 143 GSAGDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLAN 202

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILG 233
           G  GIAVGMATNIP HN+ E+ +G    +D+P+   + L+     II+GPDFPTGA ILG
Sbjct: 203 GSSGIAVGMATNIPPHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATILG 262

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
             GI+ AY TGRG I +R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I
Sbjct: 263 HKGIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKI 321

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   
Sbjct: 322 QGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTL 381

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L   ++ +V  + EV+ RRT+YL  +A +R H+L GL  A+  +DE++R+IR S   E 
Sbjct: 382 SLDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGRED 441

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+                           + + +VQ  AIL ++L RL  + R  
Sbjct: 442 ARPKLME--------------------------FLDIDQVQADAILSMQLVRLANMERQK 475

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  +I +  DIL+   R   I+  EL  +  +    RRT+I+    +M  ED 
Sbjct: 476 IIDEHEELMRKIADYNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDL 535

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E++VVTV+H G++KR   + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF
Sbjct: 536 IAEENVVVTVTHSGFIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFF 595

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT
Sbjct: 596 TNKGRVYRIKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLAT 652

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQC 705
           + G V++  L+++    + G IA++L +        DE++    C   +DI+L +K G  
Sbjct: 653 RTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMS 712

Query: 706 VRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           ++F      +R   GR + GV+G+     D++++M +V                      
Sbjct: 713 LKFAADNDQLRPM-GRQTAGVQGMKFRGDDELLAMDVVPE-------------------- 751

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            +Q +L V+ +GF KRT+  ++R+  R+
Sbjct: 752 -------------------------------DSKQDLLVVTNEGFAKRTAISEYRLQGRN 780

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G G++A  +++    G+LV    V+++DQ++ +   G +IR  V E++   R T+GV + 
Sbjct: 781 GFGVKAVQLAEG--RGSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLA 838

Query: 884 STAKDERVVSVERIRESEIVDEAE 907
              K + ++S+ R  E+   DE E
Sbjct: 839 KPDKGDEIISIARNEET-GEDEVE 861


>gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
          Length = 910

 Score =  809 bits (2090), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/924 (37%), Positives = 516/924 (55%), Gaps = 102/924 (11%)

Query: 1   MTEHIISSDEE---EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M      ++E+   ++  +    I  EM+ SYL YAI+VI+ RA+PD+RDG+KPVHRRI+
Sbjct: 23  MEPISPQANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIV 82

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M   G   ++ Y KCAR   +VMG YHPHG+AAIYD+L RMAQ WS+R  L++GQGNF
Sbjct: 83  YAMYDGGYRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNF 142

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS   DPPAA RYTECR+   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+L N
Sbjct: 143 GSAGDDPPAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLAN 202

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILG 233
           G  GIAVGMATNIP HN+ E+ +G    +D+P+   + L+     II+GPDFPTGA ILG
Sbjct: 203 GSSGIAVGMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATILG 262

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
             GI+ AY TGRG I +R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I
Sbjct: 263 HKGIEQAYRTGRGLITMRAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREGVRDGKI 321

Query: 294 VDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+RDE S R G R+V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   
Sbjct: 322 QGIADMRDETSGRTGQRLVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTL 381

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           +L   ++ +V  + EV+ RRT+YL  +A +R H+L GL  A+  +DEV+R+IR S   E 
Sbjct: 382 SLDAFIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGRED 441

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR +LM+                           + + +VQ  AIL ++L RL  + R  
Sbjct: 442 ARPKLME--------------------------FLDIDQVQADAILSMQLVRLANMERQK 475

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +E   L  +I +  DIL+   R   I+  EL  +  +    RRT+I+    +M  ED 
Sbjct: 476 IIDEHEELMRKIADYNDILAKPERQRTIVGDELDEIVAKYGDERRTKILPYSGEMNVEDL 535

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E++VVTV+H G++KR   + YRAQ RGGKG  G  +R++D V   F+ STH  +LFF
Sbjct: 536 IAEENVVVTVTHSGFIKRTKANEYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFF 595

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + LP GS  ++G+ + N+L     E I T++  P  E      Y+V AT
Sbjct: 596 TNKGRVYRIKAYELPEGSRDSKGQHVANLLQFGPDETIQTVLSIPNYEV---AKYLVLAT 652

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEILSVETCTQENDILLTTKLGQC 705
           + G V++  L+++    + G IA++L +        DE++    C   +DI+L +K G  
Sbjct: 653 RTGKVKKTALAEYDSPRQGGLIAVRLAADEETGEPTDELIGAALCNAADDIILVSKQGMS 712

Query: 706 VRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           ++F      +R   GR + GV+G+     D++++M +V                      
Sbjct: 713 LKFAADNDQLRPM-GRQTAGVQGMKFRGDDELLAMDVVPE-------------------- 751

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            +Q +L V+ +GF KRT+  ++R+  R+
Sbjct: 752 -------------------------------DSKQDLLVVTNEGFAKRTAISEYRLQGRN 780

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           G G++A  +++    G+LV    V+++DQ++ +   G +IR  V E++   R T+GV + 
Sbjct: 781 GFGVKAVQLAEG--RGSLVGALIVSEDDQVMAIMKSGKVIRSNVTEVKRTGRTTQGVTLA 838

Query: 884 STAKDERVVSVERIRESEIVDEAE 907
              K + ++S+ R  E+   DE E
Sbjct: 839 KPDKGDEIISIARNEET-GEDEVE 861


>gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
 gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 854

 Score =  809 bits (2089), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/918 (38%), Positives = 521/918 (56%), Gaps = 97/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E     I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDET---GEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KCAR+ GEVMG+YHPHG++AIYDAL R+ QDW++R  L  GQGNFGS 
Sbjct: 58  YDGGYRPDRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE ++   A  ++ D+ K TVDF+ NYDG  QEPV+L AR+PN+LVNG  
Sbjct: 118 GNDGAAAPRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    + NP    + L+    + I+GPDFPTGA ILG  G
Sbjct: 178 GIAVGMATNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQILGHKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +R V ++E+   +R  +VVTE+PYQ N   +  KIAELV++ +I  I
Sbjct: 238 IEDAYRTGRGSITMRAVVNVEEIQ-NRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGI 296

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           ADLRDE S R G R+V+ LKR A A V+LN LY++TSLQ  FS NM+A+    P   +L 
Sbjct: 297 ADLRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTSLQDNFSANMLAIVDGVPRTLSLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +VA + EV+VRRT++LLN+A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 357 AFIRHWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARG 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + ++Q  AIL+++L RL  L R  I++
Sbjct: 417 GLI--------------------------DLLGIDDLQVNAILDMQLRRLAALERQKIQD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIV 534
           E   L +EI E   IL+S  R   I+ +EL  + ++    RRT+I+     DM  ED I 
Sbjct: 451 ENAKLELEIAEYNSILASEDRQRTIVSEELAEIVNKFGDERRTQIMLGYDGDMSMEDLIP 510

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+MVVT++  GYVKR     YR+Q RGGKG  G  +R +D V   F+ +TH  +LFF++
Sbjct: 511 EEEMVVTITRGGYVKRTRSDNYRSQHRGGKGIKGAQLRGDDVVEHFFVTTTHHWLLFFTN 570

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG VY+ K + L      A+G+ + N+L+    E+I  ++   +      + Y+V ATK+
Sbjct: 571 LGRVYRAKAYELVEAGRDAKGQHVANLLAFQPDEKIAQVLDLKDY---QQSPYLVLATKN 627

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
           G V++ +L D+     +G IA+ L   DE++S +  ++ +D+LL ++ GQ +RF  +   
Sbjct: 628 GLVKKTRLEDYDTNRSAGVIAINLRDEDELVSAQLVSESDDMLLVSRKGQSIRFTATDEA 687

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV G+   + D++++  +V                               
Sbjct: 688 LRPM-GRATSGVTGMKFRQDDELLAANVVTE----------------------------- 717

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   + ++  V+E G+ KRT+  ++R   R G GI+   +
Sbjct: 718 ------------------------DSYVFIVTEGGYAKRTAVEEYRTQGRGGLGIKVAKL 753

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            +  + G LV    V D+D++++V + G ++R  V E+    R T GV+     K++R++
Sbjct: 754 VE--DRGDLVGALIVQDDDEVLVVMEGGKVVRSNVAEVPAKGRDTMGVIFAKPDKNDRII 811

Query: 893 SVERIRESEIVDEAESTE 910
            V R RE  +  E    E
Sbjct: 812 EVARNRERGLESEETEDE 829



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 92/250 (36%), Gaps = 17/250 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G VK+  L  Y   R  G     + +RDED +    +VS    +L  
Sbjct: 615 YQQSPYLVLATKNGLVKKTRLEDYDTNRSAG--VIAINLRDEDELVSAQLVSESDDMLLV 672

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +       +  P  R  + +  +   Q + +              + YV   T
Sbjct: 673 SRKGQSIRFTATDEAL-RPMGRATSGVTGMKFRQDDELLAANVVT------EDSYVFIVT 725

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL-----DSRDEILSVETCTQENDILLTTKLGQCVR 707
           + G  +R  + ++      G + +K+     D  D ++       ++++L+  + G+ VR
Sbjct: 726 EGGYAKRTAVEEYRTQ-GRGGLGIKVAKLVEDRGD-LVGALIVQDDDEVLVVMEGGKVVR 783

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GR+++GV      K D++I +A       + +E    +     Q      
Sbjct: 784 SNVAEV-PAKGRDTMGVIFAKPDKNDRIIEVARNRERGLESEETEDEVPLTEGQTAEGQT 842

Query: 768 DTEEITSLKN 777
           +T    +   
Sbjct: 843 ETGTEEAPIE 852


>gi|237784660|ref|YP_002905365.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757572|gb|ACR16822.1| DNA gyrase subunit A [Corynebacterium kroppenstedtii DSM 44385]
          Length = 866

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/917 (36%), Positives = 514/917 (56%), Gaps = 94/917 (10%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++   ++   +    ++ + I +EMQ+SY+ YA++VI+GRA+P++RDG+KPVHRRI++ 
Sbjct: 1   MSDDSGNTGGNDLFDRVSPIDIQEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRIIYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G    + YVK AR   + MG +HPHG++AIYD L RMAQ WS+R  L++GQGNFGS
Sbjct: 61  MYDNGYRPERSYVKSARPVADTMGHFHPHGDSAIYDTLVRMAQPWSMRYPLVDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              D PAA RYTECRL   A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG 
Sbjct: 121 RGNDGPAAMRYTECRLTPLAMEMVRDIRENTVDFEPNYDGKTLEPTILPSRVPNLLMNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRT 235
           GGIAVGMATNIP HNL E+       +D+ D      L+A+ME ++GPDFPT  +I+G  
Sbjct: 181 GGIAVGMATNIPPHNLTELAQAIFWCLDHYDADEATTLEAVMERVKGPDFPTAGLIVGDK 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GIK+AY TGRGSI +RGV+ IE+    R  IV+TE+PYQVN   ++  IAE VR+ +I  
Sbjct: 241 GIKDAYTTGRGSIKMRGVTSIEEER-GRTIIVITELPYQVNPDNLVSSIAEQVRDGKIAG 299

Query: 296 IADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+ + DES DR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L
Sbjct: 300 ISKIDDESSDRVGMRIVVTLKRDAVPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  + +V+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR S  PE AR
Sbjct: 360 DQLLRLYVDHQIDVIVRRTQHRLDEAEKRAHILRGLVKALDMLDEVIALIRASQTPEIAR 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                            + + E+Q  AIL +RL +L  L R  I 
Sbjct: 420 TGLM--------------------------DLLDIDELQADAILRMRLRQLAALERQKII 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           +EL  L + I +  DIL+   R   I++ EL  + +     RRT+I+    D+ +ED I 
Sbjct: 454 DELKELELTIADLKDILARPERQRQIVRDELEEIVNNYGDDRRTQIIAATGDVTEEDLIA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE++V T++  GY KR  + +YR Q+RGGKG  G  ++ +D V   F+ STH  +LFF++
Sbjct: 514 RENVVATITSTGYAKRTKVDLYRNQKRGGKGVRGAELKQDDVVRHFFVTSTHDWILFFTN 573

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ K + LP  S  ARG+ + N+L    GE I  ++     E   +  Y+V ATK 
Sbjct: 574 FGRVYRLKAYELPEASRTARGQHVANLLEFQPGEHIAQVIQLQTYE---DAPYLVLATKQ 630

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
           G V+++KL+D+      G IA+ L+  D ++  + C+  +D+LL ++ GQ +RF      
Sbjct: 631 GRVKKSKLTDYDSARSGGLIAINLNEGDSLIGAQLCSANDDLLLVSEEGQAMRFTADDDT 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV+G+     D ++++ +V                               
Sbjct: 691 LRPM-GRATAGVKGMRFRGEDALLALTVVR------------------------------ 719

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                  ++ +++  +  G+ KRT   ++    R G G+     
Sbjct: 720 -----------------------EDSYLMVATSGGYAKRTKMEEYPAKGRGGLGVATFKY 756

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +K  + G L+    V+ +D+I  ++  G+++R  V +IR +SR T GV +    K   ++
Sbjct: 757 NK--KRGKLIGALVVDQDDEIFCITTDGSVVRSNVKDIRPSSRQTMGVRLVHLDKGSELL 814

Query: 893 SVERIRESEIVDEAEST 909
           +++R  E E  + A  T
Sbjct: 815 AIDRNVEDEGEEHAAKT 831



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 13/259 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R GG     + + + D +    + S +  +L
Sbjct: 616 QTYEDAPYLVLATKQGRVKKSKLTDYDSARSGG--LIAINLNEGDSLIGAQLCSANDDLL 673

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +               + +    +  +G R               + Y++ 
Sbjct: 674 LVSEEGQAMRFTADD-------DTLRPMGRATAGVKGMRFRGEDALLALTVVREDSYLMV 726

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R K+ ++    R G          +    +      Q+++I   T  G  VR
Sbjct: 727 ATSGGYAKRTKMEEYPAKGRGGLGVATFKYNKKRGKLIGALVVDQDDEIFCITTDGSVVR 786

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  IR  + R ++GVR + L KG +++++   +  + +        K  +        
Sbjct: 787 SNVKDIRP-SSRQTMGVRLVHLDKGSELLAIDRNVEDEGEEHAAKTAEKGNAPTDPAEPD 845

Query: 768 DTEEITSLKNDSSVEGNIS 786
             +      +         
Sbjct: 846 PNDPNADGSDGDGSSDAKD 864


>gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
 gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989]
          Length = 869

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/916 (40%), Positives = 518/916 (56%), Gaps = 90/916 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            ++ V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  +WNK Y K 
Sbjct: 7   DVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQD+SLR  LI+GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           ++K AH LL DL K+TVDF PNYDGS Q P VL  R PN+L+NG  GIAVGMATNIP HN
Sbjct: 127 MKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV GC+A I+N DI +D LMEII GPDFPTGA I GR GI  AY TGRG I +R  +
Sbjct: 187 LKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATINGRAGIVQAYRTGRGRIYVRAKA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           H+E     ++E I++TEIPYQ+NKA ++E+IAELV+EK+I  I++LRDES +   RVVIE
Sbjct: 247 HVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTK-DIRVVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG   DVILN LY  T ++ +F +N+VAL   +P+   L  +L+ FV  R EVV RRT
Sbjct: 306 LKRGEIGDVILNNLYAQTQMEGVFGINVVALVDGQPKILNLKQLLECFVRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            YLL KAR+R H+L GLA+A+AN+DEV+ +I+ SP+P  AR  L+ R W ++ +   ++ 
Sbjct: 366 IYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             D   YLS  Q +AILELRL RLTG+  D + +E       I 
Sbjct: 426 AGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVARIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L+IL S +RL+ +I++EL  ++      RRT I     D+  ED I  ED VVT+SH 
Sbjct: 486 EFLEILGSSTRLMEVIREELEEIEKNYGDERRTDIQSSKRDLTIEDLITEEDRVVTISHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY K   LS Y+AQRRGG G+                                       
Sbjct: 546 GYAKTQALSDYQAQRRGGTGK--------------------------------------- 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR--RNKLS 663
               +   + +  +  L +                       ++  T  G V   +    
Sbjct: 567 ---AATSVKDEDFVEHLLIASTHDT-----------------ILCFTNAGKVYWLKVFQI 606

Query: 664 DFIQINRSGKIAMKLDSRDE------ILSVETCTQENDILLTTKLGQCVRFPISAI-RVF 716
                   G+  + L   DE      IL V    +++ I + T  G   + P++   R  
Sbjct: 607 PLAGRQSRGRPIINLLPLDESERITSILPVREYDEDHFIFMATANGTVKKTPLTQFARPR 666

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
               + G+R I L + + ++  A+    D + D  +   +  + +       +   TS  
Sbjct: 667 ----TSGLRAIDLEEDNHLVGTAV---TDGNSDVMLFSSEGKAVRFNENDVRSMGRTSRG 719

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                     E     L  ++  +LTVSE G+GKRT   ++    R+GKG+ A   S+ N
Sbjct: 720 VRGIRLAEGYEVISMVLPTEDGKVLTVSENGYGKRTKVDEYATKGRAGKGMIAMQTSERN 779

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +V    V D D+I+L+SD+GT++R  V+E+ ++ R T+GV +      E ++ VER
Sbjct: 780 --GKVVGAVQVFDGDEIMLISDQGTMVRTHVDEVSVSGRNTQGVRVIKVKDGEHLMGVER 837

Query: 897 ---IRESEIVDEAEST 909
              I + EIVD AES 
Sbjct: 838 IESIADDEIVDTAESA 853



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 90/243 (37%), Gaps = 15/243 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VK+ PL+ +   R  G     + + +++ +    +   ++ V+ F
Sbjct: 639 YDEDHFIFMATANGTVKKTPLTQFARPRTSG--LRAIDLEEDNHLVGTAVTDGNSDVMLF 696

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           SS G   +     +      +RG   I         R+              +  V+  +
Sbjct: 697 SSEGKAVRFNENDVRSMGRTSRGVRGI---------RLAEGYEVISMVLPTEDGKVLTVS 747

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R K+ ++    R   G IAM+      +++        ++I+L +  G  VR  
Sbjct: 748 ENGYGKRTKVDEYATKGRAGKGMIAMQTSERNGKVVGAVQVFDGDEIMLISDQGTMVRTH 807

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +   +GRN+ GVR I +  G+ ++ +  +     D           S      + + 
Sbjct: 808 VDEV-SVSGRNTQGVRVIKVKDGEHLMGVERIESIADDEIVDTAESASDSPASAQANSEK 866

Query: 770 EEI 772
           E  
Sbjct: 867 END 869


>gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139]
 gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3]
 gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4]
          Length = 891

 Score =  809 bits (2088), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/930 (37%), Positives = 508/930 (54%), Gaps = 100/930 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQGLVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV +     + +P+   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNEAVQWSLAHPNASHEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIA+
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAD 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASEDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRTDDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     ARG  +  +LS    E+I  +M     +   + 
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVAGLLSFLPDEKIAQVMTLRSYD---DA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRTEDDELIGAEQCSAADDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRPM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQRR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGVGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVDE--AESTE 910
            S   D+ V  +    E  + +E   ES E
Sbjct: 821 VSVRGDDAVSIIAVNPEHTVEEEVADESVE 850



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 94/268 (35%), Gaps = 7/268 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  L  Y + R+ G         ++D +      S    VL  
Sbjct: 628 YDDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAVNFRT-EDDELIGAEQCSAADDVLLI 686

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +          P  R  + +  +     + + ++     D    ++ +V  AT
Sbjct: 687 SRKGQAIRFSAGD-DQLRPMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  
Sbjct: 745 GGGYAKRTAVSEYRQQRRGGVGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +    GR+++GV+ +S+   D V  +A+      + +     ++ +           
Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGDDAVSIIAVNPEHTVEEEVADESVETVEGDATKAQSGD 863

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKE 797
               S   D     + +    +     E
Sbjct: 864 VVRRSDTVDDDRAVDTAGNDMKPEDNGE 891


>gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2]
          Length = 852

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/925 (37%), Positives = 517/925 (55%), Gaps = 103/925 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +        E   +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MADEN--DIGTEINRVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+R+ G+VMG+YHPHG++AIYDA+ R+ Q W++R  L+ GQGNFGS 
Sbjct: 59  FDGGYRPDRNFSKCSRVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSP 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTEC++   A  ++ D+ + TVDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 119 GDDGAAAPRYTECKMAPLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G   ++ +P+   +  +E    I++GPDFP GA ILGR G
Sbjct: 179 GIAVGMATNIPPHNLREVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATILGRKG 238

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI  R V  +E+    R  +VVT++PY VN   +  KIA  V++ ++  I
Sbjct: 239 IEDTYRTGRGSITQRAVVEVEEIQ-GRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGI 297

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           ADLRDES  R G R+VI LKR A A V+LN LY++TSLQ  FS NM+A+    P   +L 
Sbjct: 298 ADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTSLQENFSANMLAIVDSVPRTLSLD 357

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L+ +V  + EV+VRRT++ L KA +RAH+L G   A+  LDEV+ +IR SP+ + AR 
Sbjct: 358 SFLRLWVKHQVEVIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARS 417

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E+Q  AIL+L+L RL  L R  I+ 
Sbjct: 418 GLM--------------------------DLLEVDEIQANAILDLQLRRLAALERLKIQE 451

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIV 534
           E   +  +I E   IL++ +R   I+ +EL  + +     RRT+I+     D+  ED I 
Sbjct: 452 EAEKIEQQIAEFKYILATPARQREIVSEELDEIVERYGDDRRTKIMAGFDGDVSMEDLIP 511

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E++VVT++  GY KR    +YRAQ RGGKG  G  +R +D V   F+ STH  +LFF++
Sbjct: 512 EEEVVVTITRGGYAKRTQNHLYRAQHRGGKGIKGANLRGDDVVEQFFVTSTHNWLLFFTN 571

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ K + LP GS  A+G+ + N+L+L  GE I  ++   + E      +++ AT+ 
Sbjct: 572 TGRVYRAKAYELPEGSRDAKGQHVANLLALQPGETIAKVLSIRDYE---EAEFLILATQS 628

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDS----RDEILSVETCTQENDILLTTKLGQCVRFPI 710
           G V++ +LS++      G IA+ L       DE++S    + E+ +L+ ++ G  +RF  
Sbjct: 629 GVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVSARIVSSEDHLLMISRKGMSIRFAA 688

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               IR   GR + GV G+     D++++M ++                           
Sbjct: 689 DDDSIRPL-GRVTGGVTGMKFKGDDELLTMDVIQP------------------------- 722

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       + F+  V+E G+ KRT   ++R+  R G GIR
Sbjct: 723 ----------------------------DTFVFVVTEGGYAKRTPVDEYRLQGRGGLGIR 754

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              +++  + G LV    V++ +++++V ++G ++R  ++E+    R T GVV     K+
Sbjct: 755 VAKITE--QRGDLVGGLIVDEGEEVLVVMERGKIVRSNIDEVPAKGRNTMGVVFAKPGKN 812

Query: 889 ERVVSVERIRE---SEIVDEAESTE 910
           +R+++V R  E    E+ +EA+  E
Sbjct: 813 DRIIAVTRGPETVVEELDEEADEPE 837



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 85/246 (34%), Gaps = 15/246 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL--FIVSTHTSVL 590
               + ++  +  G VK+  LS Y + R GG     +          +   IVS+   +L
Sbjct: 616 YEEAEFLILATQSGVVKKTRLSEYDSNRTGGVIAINLREYKGQPDELVSARIVSSEDHLL 675

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +          P  R    +  +     + + T+           + +V  
Sbjct: 676 MISRKGMSIRFAADD-DSIRPLGRVTGGVTGMKFKGDDELLTMDVIQ------PDTFVFV 728

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCV 706
            T+ G  +R  + ++ ++   G + +++    E    ++      +  ++L+  + G+ V
Sbjct: 729 VTEGGYAKRTPVDEY-RLQGRGGLGIRVAKITEQRGDLVGGLIVDEGEEVLVVMERGKIV 787

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  I  +    GRN++GV      K D++I++        +  +                
Sbjct: 788 RSNIDEV-PAKGRNTMGVVFAKPGKNDRIIAVTRGPETVVEELDEEADEPEGEDVEPQTG 846

Query: 767 GDTEEI 772
            +  E 
Sbjct: 847 SEDVEE 852


>gi|315452542|ref|YP_004072812.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
 gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179]
          Length = 806

 Score =  808 bits (2087), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/890 (39%), Positives = 533/890 (59%), Gaps = 88/890 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  + I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M ++G+     Y K 
Sbjct: 4   KIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPYKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG++A+Y+AL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE R
Sbjct: 64  ARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   +  LL DL KDT+DF  NYD + +EP +L +R PN+L+NG  GIAVGMAT+IP H 
Sbjct: 124 MAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIPPHR 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             E++D  + V++NP  +L  L+EI++GPDFPTG V+ G+ GI  AY TGRG I +R  S
Sbjct: 184 PDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGGVVYGKAGILEAYTTGRGRIKVRAKS 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +EK   +RE I++ EIPYQVNKA ++E+I+ L ++K +  IA++RDESDR+G RVVIEL
Sbjct: 244 RVEKH-NNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRVVIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A ++++LN LY+ ++++  FS+ ++A+   +P  F L+ +LK F+  R+ VV+RRT 
Sbjct: 303 KKDAYSEIVLNHLYKSSNMEITFSIILLAIYNKEPRVFNLLELLKLFLVHRKSVVIRRTI 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA+ RAH+L GL +A+ + + V+ +I+ S + + A+  LMQ               
Sbjct: 363 HELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQ--------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T +LSE Q++AIL++RL RLTGL ++ I+ E   L  +I    +IL + 
Sbjct: 408 -----------THHLSEEQSKAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNA 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +L  +IK+ELL VK++  TPR+T+I E    +  ED I  EDMVVT+SH GYVKRVPL 
Sbjct: 457 DKLNALIKEELLEVKEKFSTPRKTQIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLK 516

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           VY  QRRGGKG++     ++DF+   FI +TH ++LF ++ G ++  KV+++P     A 
Sbjct: 517 VYEQQRRGGKGKNSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPEMGRNAI 576

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+AL+N++ L  GE I   +P  + +    +  +VF TK+G V+R +LS F +I   G  
Sbjct: 577 GRALVNLIDLQPGESIKATIPTKDFD---ADKSLVFFTKNGIVKRTELSAFGRIRG-GVR 632

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           A+ L+  D +++ +       ++ + +  G C+RF + ++R   GR + GVRG+ L +GD
Sbjct: 633 AIVLEEDDALVTAKIIDSSVQELFMASSKGMCIRFSVESVREM-GRVARGVRGMRLREGD 691

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI    V                                                    
Sbjct: 692 FVIGAGGVSSD------------------------------------------------- 702

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              EQ +L+VS KG GK+T +  +R   R G G+    ++   + G LV +  V++   +
Sbjct: 703 ---EQKLLSVSSKGIGKQTLAGAYRAQGRGGLGVIGVKITP--KTGHLVGIVSVDEGQDL 757

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +L++  G +IR+P+  IR   R   GV +     DE VV      + E+ 
Sbjct: 758 MLLTKSGKMIRMPMETIRETGRNASGVKLVQMESDE-VVYASTCPKEEVE 806


>gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
 gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii
           SS-2004]
          Length = 880

 Score =  808 bits (2086), Expect = 0.0,   Method: Composition-based stats.
 Identities = 380/856 (44%), Positives = 537/856 (62%), Gaps = 33/856 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TV+F PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVDGC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  +
Sbjct: 187 LSEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAIINGRRGIQEAYRTGRGKIYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE I+V EIPYQ+NKA ++EKIAELV++KRI  I+ LRDESD+ G R+VIE
Sbjct: 247 KIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A A+V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AF+  R EVV RRT
Sbjct: 307 VKRDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQPKLLNLKDILSAFINHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L  LA+A+ N+D  + +IR +  P  A+  L+ ++W   ++  +++ 
Sbjct: 367 IFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAMLEQ 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L   I 
Sbjct: 427 AGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKLIG 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL +  RL  +I++ELL++KD+ +  RRT + E   D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLFILENPERLREVIREELLAIKDQYNDARRTELTENSADINIEDLINQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FS+ G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNKGKMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ ++N+L L Q ERIT I+P  E E   + L +  AT  G V++ KLS+F
Sbjct: 607 LPEASRGARGRPIVNLLPLEQEERITAILPVREYE---DGLNIFMATASGTVKKTKLSEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP-------------ISA 712
            +   +G IA+KL   DE++ V+     N+++L +  G+ VRF              +  
Sbjct: 664 SRPRSAGIIAVKLSDGDELIGVDLTDGSNEVMLFSAKGKVVRFLEEDEETLEDGTIRVKG 723

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEE 771
           +R   GR + GVRGI L+ GD+V+S+ I     +        Y K  +           +
Sbjct: 724 VRAM-GRTAAGVRGIKLSAGDKVVSLIIPRGEGEILTVTENGYGKRTAQSEYPTKSRATQ 782

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                  S   G++      E   +   I+ +++ G   RT   +  +  R+ +G+    
Sbjct: 783 GVISIKVSERNGDVIGAIQVETTDQ---IMMITDAGTLVRTRVSEVSVVGRNTQGVTLIR 839

Query: 832 VSKINEIGALVAVFPV 847
            ++  +   +V +  V
Sbjct: 840 TTEDEK---VVGLQRV 852



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/233 (18%), Positives = 82/233 (35%), Gaps = 12/233 (5%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  LS +   R  G     +   DE    DL        V+ FS+ G V +  
Sbjct: 650 TASGTVKKTKLSEFSRPRSAGIIAVKLSDGDELIGVDL--TDGSNEVMLFSAKGKVVRFL 707

Query: 603 VWRLPI----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
                            +A+    +  +G +++                ++  T++G  +
Sbjct: 708 EEDEETLEDGTIRVKGVRAMGRTAAGVRGIKLSAGDKVVSLIIPRGEGEILTVTENGYGK 767

Query: 659 RNKLSDFIQINRSGKIAMKLD----SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           R   S++   +R+ +  + +     + D ++        + I++ T  G  VR  +S + 
Sbjct: 768 RTAQSEYPTKSRATQGVISIKVSERNGD-VIGAIQVETTDQIMMITDAGTLVRTRVSEV- 825

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              GRN+ GV  I   + ++V+ +  V   D D DE                 
Sbjct: 826 SVVGRNTQGVTLIRTTEDEKVVGLQRVAEPDDDEDEENNITSPSDEGNSESED 878


>gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 882

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/912 (38%), Positives = 513/912 (56%), Gaps = 95/912 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + +    I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   
Sbjct: 27  ENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRP 86

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA
Sbjct: 87  DRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAA 146

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMA
Sbjct: 147 PRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMA 206

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL EV +G    + NP    D     LM  I+GPDFPTGA ILG  GI++AY T
Sbjct: 207 TNIPPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGTKGIEDAYRT 266

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +R V ++E+    R  +VVTE+PYQ N   +  KIAEL+++ ++  IADLRDE 
Sbjct: 267 GRGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDET 325

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S R G R+VI LKR AS  V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V
Sbjct: 326 SGRTGQRLVIVLKRDASPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFVRHWV 385

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM+   
Sbjct: 386 DHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLME--- 442

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E Q +AIL ++L RL  L R  I++  + L  
Sbjct: 443 -----------------------FLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMR 479

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVT 541
            I E   I++S +R   II +EL  + +     RRT+I+     DM  ED I  E++VVT
Sbjct: 480 MIAEYNAIIASETRQREIISEELGEIVNRYGDERRTQIMYGYNGDMSMEDLIPEEEVVVT 539

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ 
Sbjct: 540 ITRGGYIKRTRSDQYRSQHRGGKGIKGASLRGDDVVEHFFVTTTHSWILFFTNLGRVYRA 599

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + L      A+G+ + N+L    GE I  +M     E   +  Y+V AT+ G V++++
Sbjct: 600 KGYELQEAGRDAKGQHIANLLEFQGGEHIAQVMELKSYE---DAEYLVLATRGGMVKKSR 656

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGR 719
           LSD+     +G IA+ L   DE++S  T + ++DILL ++ G  +RF      +R   GR
Sbjct: 657 LSDYDTNRTAGLIAINLREGDEVVSAFTVSAQDDILLVSRNGMSLRFHADDASLRPM-GR 715

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GV G+   +GD++IS  +V                                      
Sbjct: 716 STSGVTGMKFREGDELISANVVTEG----------------------------------- 740

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                              F+  V+E G+ KRTS  ++R+  R+G GI+   + +  + G
Sbjct: 741 ------------------SFVFVVTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVE--DRG 780

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ALV    V++ D++++V   G ++R  VNE+    R T GV+     K + ++ V R ++
Sbjct: 781 ALVGGLIVDEEDEVLVVMASGKVVRSNVNEVPAKGRDTMGVIFAKPGKGDSIIGVARNQD 840

Query: 900 SEIVD-EAESTE 910
            ++ D + E+TE
Sbjct: 841 RQLDDSDDETTE 852



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 13/256 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                 + +V  +  G VK+  LS Y   R  G     + +R+ D V   F VS    +L
Sbjct: 635 KSYEDAEYLVLATRGGMVKKSRLSDYDTNRTAG--LIAINLREGDEVVSAFTVSAQDDIL 692

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  + +  +   +G+ + +              +V  
Sbjct: 693 LVSRNGMSLRFHADDASL-RPMGRSTSGVTGMKFREGDELISANVVT------EGSFVFV 745

Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  + ++     N  G    KL      ++      +E+++L+    G+ VR
Sbjct: 746 VTEGGYAKRTSVDEYRVQGRNGFGIKVAKLVEDRGALVGGLIVDEEDEVLVVMASGKVVR 805

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GR+++GV      KGD +I +A       D  +        +++     G
Sbjct: 806 SNVNEV-PAKGRDTMGVIFAKPGKGDSIIGVARNQDRQLDDSDDETTENTEASESSEAPG 864

Query: 768 DTEEITSLKNDSSVEG 783
              E  +   D +  G
Sbjct: 865 TDNEGEAAAADLTATG 880


>gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925]
 gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925]
          Length = 849

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/896 (39%), Positives = 522/896 (58%), Gaps = 87/896 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  I  + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K 
Sbjct: 2   NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G    IDNPDI +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +++
Sbjct: 182 PPHNLTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIVGKSGIRKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    R +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+
Sbjct: 242 RSKAEIEEEK-GRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LNQLY++T +Q  F + M+AL   +P+  +L  +LK ++ F+EEV+ 
Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLKHYIKFQEEVIT 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L+KA  RAH+L GL IA+ ++DEV+++IR S     AR  LM R          
Sbjct: 361 RRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSR---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTGL R+ I  E   L   IK    I
Sbjct: 411 ----------------FGLSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENIKYFRQI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549
           LS +S LL IIK EL  +K +    RR+ I++G  +  + ED I  +D+V+T++H GY+K
Sbjct: 455 LSDKSLLLKIIKDELNEIKVKYGDERRSEIIQGEGNDIDIEDLIEEKDVVITLTHAGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y AQ+RGG+G   +  +++DFV  +   STH ++LFF++LG VY+ K +++P  
Sbjct: 515 RLPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G   +N+++L   ++   I                                    
Sbjct: 575 GRTAKG---MNLINLIPLDKEEKIQN---------------------------------- 597

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                         ++ ++   ++  +++ TK G   +  +            G+  I+L
Sbjct: 598 --------------VIYLKEFKKDKFLIMGTKKGLIKKTSLDKYASI---RKNGLNAINL 640

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+++S  +      D +         + +           T+    +       E  
Sbjct: 641 REDDELVSARVTT---GDCNIIYATKNGYAIRFHENDVRPMGRTATGVKAITLREDDEVV 697

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E+  + +  L VSE G+GKRT    + +  R GKG+    +S+  + G L+    V D
Sbjct: 698 SMEVASENRDFLVVSENGYGKRTPIDQYTLQKRGGKGVITYKISE--KTGLLIGARSVED 755

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            D+++L++D G  IR+ V++I   SR   GV +  T  +E+VV++ ++  SE  D+
Sbjct: 756 QDELMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVDNEKVVTMAKVNISENEDD 811


>gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
 gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879]
          Length = 831

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/884 (42%), Positives = 530/884 (59%), Gaps = 89/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYVKC 74
           I  V I D ++ SYL Y+++VI+GRA+P+ RDGLKPVHRRIL+ M   +G+  N KY KC
Sbjct: 10  IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEVMG YHPHG+ AIYDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE +
Sbjct: 70  AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K    +L D+ KDTVDF PNYDGS +EP +L  R+PN+LVNG  GIAVGMAT+IP H 
Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVVD  +  I+NP  +++ ++ +I GPDFPTG +I GR GI  AY TGRG I IR   
Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGIIHGRQGIIEAYKTGRGRIKIRAKV 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EKT   ++ IVV EIPYQVNKA + E+I  L ++K +  IA++RDESD+ G R+VIEL
Sbjct: 250 HVEKTKT-KDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIEL 308

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN LY+ +++++ F + ++A+ G +P+ FTL+ +L  F++ R+ +V+RR  
Sbjct: 309 KREAMSEIVLNHLYKSSAMETTFGIILLAIEGREPKIFTLLELLDIFISHRKTIVIRRII 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR R H+L G  IA+ N+DE+V +IR S NPE A+ ELM R              
Sbjct: 369 FELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSR-------------- 414

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q++AILE+RL RLTGL RD I NE   L   I E   IL S 
Sbjct: 415 ------------FSLTEIQSKAILEMRLQRLTGLERDKIENEYRELVALIAELESILRSE 462

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++ G+IK+ELL V+ +  +PRRT I E    ++ ED I  E +VVT+SH GYVKRV L 
Sbjct: 463 DKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIEDLIPNEAVVVTMSHRGYVKRVLLK 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q RGGKG+      D+DF+   F+ +TH +++F ++ G +Y  KV+R+P     A 
Sbjct: 523 TYEKQHRGGKGKISGNTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAI 582

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N++ L  GE+I T +   +      +  +VF TK+G V+R  LS++  I  +G  
Sbjct: 583 GKAVVNLIGLQDGEKIMTTITTSDFN---EDKSLVFFTKNGIVKRTNLSEYKNIRNNGVR 639

Query: 675 AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KG 732
           A+ LD  DE++S         ++ + TK GQC+RF   +IR   GR + GV GI      
Sbjct: 640 AINLDEDDELISASIIDSSVKELFIATKEGQCIRFAADSIRDI-GRVARGVIGIKFKVAN 698

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI+   +   +                                               
Sbjct: 699 DSVIAATTIKGDEDK--------------------------------------------- 713

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851
                  +L++SE G GK+T +  +   NR GKG+ A  ++  N+ G LV+V  VND++ 
Sbjct: 714 -------LLSISELGIGKQTLAGSYSTINRGGKGVIAMKLT--NKTGKLVSVLSVNDSNM 764

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +++++  G +IRVP+  IR A R T GV I S    ++V    
Sbjct: 765 DLMVLTTSGKMIRVPLESIREAGRNTSGVKIVSLGNKDKVAFAS 808



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 99/237 (41%), Gaps = 19/237 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--KGD 733
           + L++ DEI+++   ++  +     +     RF ++ I     +  + +R   L   + D
Sbjct: 386 IALENIDEIVALIRASENPE---KAQSELMSRFSLTEI---QSKAILEMRLQRLTGLERD 439

Query: 734 QVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++ +    ++   A+ +  +     ++   +    + ++  S    + +E N      ++
Sbjct: 440 KIENEYRELVALIAELESILRSEDKINGVIKEELLEVQKQFSSPRRTLIEENYDAIDIED 499

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDND 851
           L   E  ++T+S +G+ KR     +   +R GKG     +S        +  F V N +D
Sbjct: 500 LIPNEAVVVTMSHRGYVKRVLLKTYEKQHRGGKG----KISGNTHDDDFIQSFFVANTHD 555

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            I+ ++++G L  + V  I  A R   G   V +      E++  +  I  S+  ++
Sbjct: 556 TIMFITNRGQLYWLKVYRIPEAGRTAIGKAVVNLIGLQDGEKI--MTTITTSDFNED 610


>gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
 gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1]
 gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium
           salinarum R1]
          Length = 824

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/907 (38%), Positives = 513/907 (56%), Gaps = 83/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+       ++    + +V + +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSSESPDVPDDVADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + GV     + K + I G+ MG YHPHG++ IYDAL RMAQD+S+R  L++GQGNFGSV
Sbjct: 61  HESGVTSGSGHRKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+   A  LL D+ KDTV F+ NYD    EP VL + +PN+LVNG  
Sbjct: 121 DGDPAAAMRYTEARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TN+P HNLGEV+D  + +ID PD  +  LME ++GPDFPT A I+GR  +K A
Sbjct: 181 GIAVGMSTNVPPHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIVGRADVKQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+E     R+ IV+TE+PYQ NK+ ++E+IA+ VR+ ++  I DLR
Sbjct: 241 YQTGRGRVRMRAEYHVESNGR-RDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VI+LK+ A+ DV+ N+L   + L+  FSV  +AL   +P+  TL  +L  
Sbjct: 300 DESDRNGVRIVIDLKQKANTDVVENRLLE-SHLEKTFSVINLALVDGEPKVLTLKELLAE 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V+ R+EVV RR+++ L +A DRAH+L G   A+ N DEVV +I+ + + + A+      
Sbjct: 359 YVSHRKEVVRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKE----- 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q   I+ ++L  LT +   DI +E   +
Sbjct: 414 ---------------------TLKSAFDFSQDQADHIVRMQLGSLTSMEAADIESEYEDV 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+   +IL S   LL +IK EL  +K +    RRT  +E    + DED I  ED VV
Sbjct: 453 TARIERLEEILGSEQELLDVIKDELREIKTQYADERRTSFIEDTGTVADEDLIPEEDTVV 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S   Y+KRVP   + AQ RGGKG  G  ++D D V+ +F  STH  +L F+  G VY+
Sbjct: 513 VLSEGDYIKRVPAETFDAQHRGGKGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYR 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  ARG + +NIL L+ GE I+ ++   + +   ++ Y+  AT++G V+R 
Sbjct: 573 LKVYQVPEMSRTARGTSAVNILDLDDGEEISAVVTADDLDFKADDEYLTMATRNGYVKRT 632

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            + +F  I  +G IA+ L+  D +  VE     +D++L ++ G  +RF    +R   GRN
Sbjct: 633 SVGEFGNILSTGIIAIDLEDGDALADVEVTDGSHDVILGSEAGMAIRFDEGDVRAM-GRN 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L   D++  +A V   D                                   
Sbjct: 692 ARGVRGMDLDAADRIAGVAAVESEDDRS-------------------------------- 719

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+E G+GKRT   ++R  +R+GKG+        N  G 
Sbjct: 720 -------------------LLTVTEFGYGKRTRVGEYRSQSRNGKGLVDIKTGDRN--GD 758

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V+V  V D+D ++++S  G +I++PV+EI    R TKGV I +    + V  V  +R +
Sbjct: 759 VVSVDAVGDDDSLVVMSADGQIIQMPVDEISTVGRNTKGVNIMAVGSGDEVAGVS-VRAA 817

Query: 901 EIVDEAE 907
           +  D  E
Sbjct: 818 DQADGEE 824


>gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
 gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium
           marinum DSM 15272]
          Length = 855

 Score =  807 bits (2085), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/919 (38%), Positives = 510/919 (55%), Gaps = 85/919 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I     E   I  V + DEMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDTPI-----ERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + KC+RI G+VMG+YHPHG+ AIYD L R+AQ W +R  +I GQGNFGS 
Sbjct: 56  YDGGYRPDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSP 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTEC+L   A  ++ D+ ++TVDF+PNYDG   EP VL +R PN+LVNG  
Sbjct: 116 GDDPAAAMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSA 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G    + +P+     L++     I+GPDFPT  +I+G +G
Sbjct: 176 GIAVGMATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGTSG 235

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGS+ +R +  IE+ +  R Q+VVTE+PYQVN  +++ KIA+LV   R+  +
Sbjct: 236 IEDMYRTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGV 295

Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +DLRDES  + G R+VIE++R A A V+LN LY++T LQS FS NM+AL    P   TL 
Sbjct: 296 SDLRDESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLALVDDVPRTLTLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G +  ++  + +V+ RRT+Y L KA +RAH+  GL  A+  LD+V+ +IR SP  + AR 
Sbjct: 356 GFITNWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q  AILE++L RL  L R  I +
Sbjct: 416 GLIE--------------------------LLEIDEIQANAILEMQLRRLAALERQKILD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L   I +  DIL    R   I+  EL  + D+    RR+RI+    D+ DED I  
Sbjct: 450 ELAELERMIADFTDILERPERQREIVSTELAEIVDKYGDDRRSRIIPADGDLSDEDLIPD 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR    +YR Q RGGKG  G  +RD DFV  LF  + H  +LFF++ 
Sbjct: 510 EEVVVTITSGGYAKRTKTDLYRVQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTA 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     A+G  +  +LS    E+I  ++   + E      Y+V AT+ G
Sbjct: 570 GRVYRAKAYHLPEAGRDAKGGHVAGLLSFQPDEQIAQVLAVRDYE---QAPYLVLATRKG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
            V++ +L+D+    ++G IA+   D  DE++  E    ++D+LL ++  Q +RF      
Sbjct: 627 LVKKTRLTDYNSPRQAGVIAINFRDDDDELIGAELVGPDDDLLLISRKAQAIRFRADDEQ 686

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV G+     D ++SM ++    A  D                       
Sbjct: 687 LRPM-GRATSGVTGMKFRGEDDLLSMTVIRREHAALDAE--------------------- 724

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                             +     + ++ TV++ GF K+T   ++R+  R G GI+A  +
Sbjct: 725 ------------------EVADEDKLYVFTVTDGGFAKKTPVGEYRLQGRGGLGIKAMQI 766

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +     G LV    + D D +I V+  G + R  V+ +    R T GV       D+RVV
Sbjct: 767 T--GARGELVGGLVLKDTDDVISVTSGGQVTRSLVSGVNPTGRGTMGVSFVKFKGDDRVV 824

Query: 893 SVERIRE-SEIVDEAESTE 910
           ++ R  E +  V E E  +
Sbjct: 825 TIARNAEVAADVAEIEEGD 843



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 88/241 (36%), Gaps = 16/241 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G VK+  L+ Y + R+ G         D++ +     V     +L  
Sbjct: 613 YEQAPYLVLATRKGLVKKTRLTDYNSPRQAGVIAINFRDDDDELIGAEL-VGPDDDLLLI 671

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--------EDESSWN 644
           S      + +     +  P  R  + +  +     + + ++            E+ +  +
Sbjct: 672 SRKAQAIRFRADDEQL-RPMGRATSGVTGMKFRGEDDLLSMTVIRREHAALDAEEVADED 730

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD----EILSVETCTQENDILLTT 700
            LYV   T  G  ++  + ++ ++   G + +K         E++        +D++  T
Sbjct: 731 KLYVFTVTDGGFAKKTPVGEY-RLQGRGGLGIKAMQITGARGELVGGLVLKDTDDVISVT 789

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GQ  R  +S +    GR ++GV  +     D+V+++A      AD  E        +A
Sbjct: 790 SGGQVTRSLVSGVNP-TGRGTMGVSFVKFKGDDRVVTIARNAEVAADVAEIEEGDPVPAA 848

Query: 761 Q 761
            
Sbjct: 849 P 849


>gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
 gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109]
          Length = 870

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/920 (38%), Positives = 517/920 (56%), Gaps = 103/920 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE      E E   I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTET---PGEIEHGRIDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++++ KC+R+ G+VMGKYHPHG++AIYDAL R+ QDWSLR  L+ GQGNFGS 
Sbjct: 58  YDGGYRPDRQFSKCSRVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSP 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTEC++   A  ++ D+ +D VDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 118 GDDPAAAPRYTECKMAPLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSA 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV  G    +++PD   +     LM  I+GPDFPT A ILGR G
Sbjct: 178 GIAVGMATNIPPHNLREVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATILGRKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ R+  I
Sbjct: 238 IEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGI 296

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   ++ 
Sbjct: 297 ADIRDETSGRAGQRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSID 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             ++ +V+ + +V+ RRT++ L KA +  H+  G   A+  LDEV+ +IR SP+ E AR 
Sbjct: 357 AFVRHWVSHQIDVIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARN 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E+Q +AIL L+L RL  L R +I +
Sbjct: 417 GLME--------------------------LLGIDELQAQAILNLQLRRLAALQRQEIMD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
             ++L  +I E   IL S  R   I+ +EL +V D+    RRT I+    ++  ED I  
Sbjct: 451 RHDALEADITELNAILGSPERQRTIVSEELATVVDKFGDERRTHILPFDGEVSIEDLIAE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR  +  YRAQRRGGKG  G  +R++D V   F+ +TH  +LFF++L
Sbjct: 511 EDVVVTITRGGYAKRTRVDAYRAQRRGGKGVRGAQLREDDLVDHFFVTTTHRWLLFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP     A+G+ + N+L+   GE+I  ++   + E      ++V ATK G
Sbjct: 571 GRVYRAKAYELPEAGRDAKGQHVANLLAFQPGEKIAQVLDLRDYE---QAEHLVLATKRG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +L+++      G IA+ L        DE+++      + D++L ++ GQ VRF  
Sbjct: 628 LVKKTRLTEYDSNRSGGVIAINLREDEDGRPDELVAARLVDSDQDVILVSRQGQSVRFTA 687

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           S   +R   GR + GV G+     D +++M +V                           
Sbjct: 688 SDEALRPM-GRATSGVTGMKFRGDDDLLAMDVVRE------------------------- 721

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS--YDFRISNRSGKG 826
                                       + F+ TV+E G  KRT+    ++R   R G G
Sbjct: 722 ----------------------------DAFLFTVTEGGIAKRTALTVENYRQQGRGGLG 753

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I+  ++ + N  G LV     + +D+++++ ++G ++R   +E+    R T+GV+     
Sbjct: 754 IKVANLPEAN--GDLVGALVTDADDEVLVIMERGKIVRSATSEVNATGRTTQGVIFAKPD 811

Query: 887 KDERVVSVERIRESEIVDEA 906
             +R+++V R  E  + D+ 
Sbjct: 812 TGDRIIAVARNSERHLEDDG 831


>gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551]
 gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551]
          Length = 836

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/847 (42%), Positives = 528/847 (62%), Gaps = 35/847 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DKPNSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TG+GSI+
Sbjct: 183 IPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  ++ I+V E+PYQVNKA ++EKIAEL R+K+I  I DLRDESDR G R
Sbjct: 243 VRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN LY+ TSLQ+ F +N +AL   +P+   L   L+ ++  +  V+
Sbjct: 303 IVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ NLD V+ +IR S   + AR  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ VK+  +  RRT I   G   +EDED I R+D+V++++H GY+
Sbjct: 457 ILADEEKVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +++GE +  I+   E     ++ Y+ F TK G  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVDKGEWVNAIIRVDEFV---DDWYLFFTTKQGISKRTPLSSFENI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IA+ L   DE++SV+    + D+++ TK G  +RF  + +R   GR + GV+GI+
Sbjct: 634 RNSGLIALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGIT 692

Query: 729 LAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+VI M I+   +D     +  Y K    +   +     +     N +   G++  
Sbjct: 693 LDSEDEVIGMEILEEQSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +C     +E+ I+ ++  G   R S  D     R+ +G++   +     +  +  V   
Sbjct: 753 LKCV---SQEEDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809

Query: 848 NDNDQII 854
            D D+++
Sbjct: 810 EDEDEVL 816


>gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551]
 gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551]
          Length = 861

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/915 (39%), Positives = 528/915 (57%), Gaps = 78/915 (8%)

Query: 1   MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M+       +++      + +  I  EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSSDAPDKFQKDAGIAAEVQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M + GV     + K + I GE MG YHPHG++AIYDALARMAQD+S+R  L++GQGNF
Sbjct: 61  YAMNEAGVSARSSHRKSSSIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGDPPAA RYTE R+   A  LL+D+ KDTVDF+ NYD   QEPVVL + +PN+LVN
Sbjct: 121 GSVDGDPPAAMRYTEARMAPIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGM+TNIP HNLGEV+D    +I+NPD  ++ LME ++GPDFPTGA I+G+  +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIVGKNAV 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRG I +R    +++   D + IV+TE+PYQ NKA ++E+IA+ V + +I  I 
Sbjct: 241 HKAYKTGRGRIRVRAEFEVDE---DGDNIVITELPYQENKARLIERIADDVNDGKIEGIR 297

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           DLRDESDR G RVV+ELKRGA+ DV+ NQL  +  L+S F V  +AL   +P   TL   
Sbjct: 298 DLRDESDRDGIRVVVELKRGANPDVVKNQLLEH-HLESTFGVINLALVDGQPRVLTLKET 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK ++  R EVV RR++Y L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L
Sbjct: 357 LKEYLDHRREVVRRRSEYELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAAL 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                   D + L               T   SE Q   I+ ++L  LT +   +I++E 
Sbjct: 417 RGEMTVEVDGEPL--------------PTFDFSEDQANHIVAMQLGSLTSMEAAEIKDEY 462

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I    +IL++   L  +IK EL ++KDE D  RRT  +E    +  ED I  ED
Sbjct: 463 EEVQDRIDRLNEILNNPDELDAVIKSELTAIKDEYDDERRTSFIEDTGTVTHEDLIAEED 522

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VV V+   Y+KR+PL  +RAQ RGGKG  G  +++ D V+ +F+ STH  +L+F++ G 
Sbjct: 523 VVVVVTEDDYIKRMPLDTFRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQ 582

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VYK K +++P  S  ARGK+ +N+L L+ GE IT ++    D     + Y+  AT++G V
Sbjct: 583 VYKLKTYQIPEMSRTARGKSAVNLLELDDGEEITAVVNT-ADIEDETDKYLTMATQNGYV 641

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  +  F  I  +G IA KLD  DE+  VE     +D++L ++ G  +RF  S +R   
Sbjct: 642 KRTSVEKFQNILTTGIIATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAM- 700

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRG+ L   D+++ +A V     +                              
Sbjct: 701 GRSARGVRGMKLEGDDELVGVAAVDEDRHN------------------------------ 730

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                ++LTV++ G+GKR+    +R  +R+GKG+     +  N 
Sbjct: 731 ---------------------WVLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRN- 768

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER- 896
            G + A+  V   D + ++S+ G ++R PV +I    R T GV +    + + V SV+  
Sbjct: 769 -GPVCAMETVGYGDHLFVMSESGQILRTPVEDISTVGRNTMGVTVMDMDEGDHVASVDVY 827

Query: 897 -IRESEIVDEAESTE 910
            +   E+ +EA   E
Sbjct: 828 NVGSDEVDEEASDEE 842



 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 14/252 (5%)

Query: 528 EDEDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              D     D  +T+ +  GYVKR  +  ++     G       + ++D + D+ +    
Sbjct: 620 NTADIEDETDKYLTMATQNGYVKRTSVEKFQNILTTG--IIATKLDEDDELADVEVTDGS 677

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             ++  S  G   +     +      ARG   +  + L   + +  +    ED  +W   
Sbjct: 678 HDLVLASRDGMAIRFDESDVRAMGRSARG---VRGMKLEGDDELVGVAAVDEDRHNW--- 731

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLG 703
            V+  T++G  +R+ +  + + +R+GK  + + + D    V         + + + ++ G
Sbjct: 732 -VLTVTQNGYGKRSDIERYRRQSRNGKGLIDIKTNDRNGPVCAMETVGYGDHLFVMSESG 790

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +R P+  I    GRN++GV  + + +GD V S+ +      + DE     +    +  
Sbjct: 791 QILRTPVEDISTV-GRNTMGVTVMDMDEGDHVASVDVYNVGSDEVDEEASDEEAPDDETS 849

Query: 764 LISGDTEEITSL 775
                 E+ ++ 
Sbjct: 850 DEDTSDEDTSTE 861


>gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 820

 Score =  807 bits (2084), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/891 (38%), Positives = 515/891 (57%), Gaps = 87/891 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I   ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M  + +    K+
Sbjct: 5   ENELIIPRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G +HPHG   IY  L RMAQ W +R  L++GQGNFGSVDGDPPAA RYT
Sbjct: 65  RKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  L+DDL K+TVD  PNYD +  EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTHASIQLMDDLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++    V+DNP+  +  +M+++  PDFPTG +I G  G+K AY TGRG I++R
Sbjct: 185 PHNLKELINATKLVLDNPNTSIQEIMQVMPAPDFPTGGIICGYRGVKEAYHTGRGKIILR 244

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           GV +IE+   DRE +V+ +IPY VNK+ ++E+IAEL   K +  I+DLRDESD+ G R+V
Sbjct: 245 GVVNIEE-KKDREILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKRG   DVI+NQLY++T LQ  F  NM+AL+   P    +  ++ ++V  R EVV R
Sbjct: 304 IELKRGEIPDVIINQLYKFTDLQVTFGCNMLALDKGLPRTMNIKQLIGSWVDHRIEVVRR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA  R H+L G   A+ NLDEVV+IIR S + E A+  L++            
Sbjct: 364 RTRYELQKAEARLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIE------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S  Q  A+L+LRL +LTGL RD I++E + L  +I+    +L
Sbjct: 412 --------------HFEFSIKQANAVLDLRLYQLTGLERDKIQSEYDELLKKIEYYRAVL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +S   +  IIK+EL  ++ +  + R T+IVE   DM+ ED I  E  ++T+S   Y+KR+
Sbjct: 458 ASEQMVRDIIKEELDEIQVKHKSERATQIVEAEGDMDIEDLIANEPAIITISQDDYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVM-RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           P+  +R QRRGG G  G    ++ED +  L++ +TH  +L F++LG  Y  KVW++P GS
Sbjct: 518 PVDTFREQRRGGTGVVGFNQKKEEDVLKGLYVANTHDHLLVFTNLGRCYWLKVWQIPEGS 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +++GK L+N+LS  + E         +  +   + YV+ AT++G V++  +  F    R
Sbjct: 578 RRSKGKPLVNLLSDIRSEESIAT--VLQTSNFEGDRYVLMATRNGIVKKTPIDAFSNPRR 635

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ +   DE+        E  ++L T  G  VRF    +R   GR + GV+G+SL 
Sbjct: 636 NGIWAIDIVEGDELEGARLVEGEQQVMLFTHNGMAVRFDHHKVRSM-GRMARGVKGVSLK 694

Query: 731 -KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V+   +V   +                                            
Sbjct: 695 GDNDRVVGCEVVSGNET------------------------------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     +L V E GFGKR++  DFR +NR G G+R+   S+ N  G +V    + D
Sbjct: 712 ----------VLIVCENGFGKRSTVSDFRQTNRGGVGVRSIITSERN--GKVVGAVCITD 759

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D ++++S  G  +R+ + ++R+  R T+GV + +  +D+ +V+++++  +
Sbjct: 760 DDGLLMMSSSGQTLRISMKDLRVMGRNTQGVKLANLREDDILVAIQKVESA 810


>gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
 gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165]
          Length = 854

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/910 (39%), Positives = 536/910 (58%), Gaps = 90/910 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA I++PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+    R QI+VTEIPY VNKA ++E IA+LV+EKRI  I+DL 
Sbjct: 240 YATGRGKITLRGRATIEEKKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+VI++++ A+  V+LNQLY+YT LQ    V M+A++   P+  TL  +++ 
Sbjct: 300 DETNRKGMRIVIDVRKDANPQVVLNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419
           +V F++EVV RRT+Y L KAR+RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELGS 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++  +IL+  +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEIETVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQ+RGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   +D  +    +V   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSKDT-ANEGGFVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF     R   GR
Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  GVR I LA+GD+V+ + I                                       
Sbjct: 692 SGHGVRAIKLAEGDEVVGVCICREN----------------------------------- 716

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               ILTV+E G G+R+    +RI+ R GKGIR  D SK     
Sbjct: 717 ------------------ATILTVTENGKGRRSDIDTYRITARGGKGIRNYDASK----D 754

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + AV  V+D D ++L S +G +IR+  NEI + SR   GV +    ++++V+ + R   
Sbjct: 755 KVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVMVLAR--- 811

Query: 900 SEIVDEAEST 909
           ++  DEA++ 
Sbjct: 812 TDHDDEAQTE 821


>gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2]
 gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1]
 gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3]
          Length = 891

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/922 (37%), Positives = 502/922 (54%), Gaps = 98/922 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV       + +PD   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIAE
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAE 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASDDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     A+G  +  +LS    E+I  +M     E   + 
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYE---DA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+      DE++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRTEDDELIGAEQCSAGDDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRSM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGLGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVD 904
            S    + V  +    E  + +
Sbjct: 821 VSVRGKDAVSIIALNPEHAVEE 842



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 8/269 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  L  Y + R+ G         ++D +      S    VL  
Sbjct: 628 YEDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRT-EDDELIGAEQCSAGDDVLLI 686

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +             R  + +  +     + + ++     D    ++ +V  AT
Sbjct: 687 SRKGQAIRFSAGD-DQLRSMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  
Sbjct: 745 GGGYAKRTAVSEYRQQGRGGLGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +    GR+++GV+ +S+   D V S+  +    A  ++    +          +   
Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGKDAV-SIIALNPEHAVEEKVTEELVETGEGDATQAESR 862

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798
           + +             + E   + +   +
Sbjct: 863 DVLLQSDTVDDDRAADTAENDMKPEDNGE 891


>gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8]
 gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8]
          Length = 838

 Score =  807 bits (2083), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/899 (39%), Positives = 529/899 (58%), Gaps = 93/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  +    +   M+ S+L Y++ VI+ RA+PD+RDGLKPVHRRIL+ M + G+  ++ Y
Sbjct: 2   DEYNLIDQDVEHIMKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA   G V+G+YHPHG+A++YDAL R+AQ +SLR  L++G GNFGSVDGDPPAA RYT
Sbjct: 62  RKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF+PNYD   QEPVVL +R+PN+L NG  GIAVGMATNIP
Sbjct: 122 EARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV++G   V+ NPD  LD LM+ I+GPDFPTG +I+GR+GI+ AY TGRG I++R
Sbjct: 182 PHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGGIIMGRSGIRAAYGTGRGKIILR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R  I+VTEIPY VNKA ++E IA LV++KRI  I DLRDE+ R G R+V
Sbjct: 242 SKTSIEEIK-GRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGMRIV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+A V+LN+L+  T LQ    V ++AL    P+  TL  IL+ ++ F+ +V+ R
Sbjct: 301 IELKKDANAQVVLNKLFTLTQLQDSVGVILLALVKGVPKVLTLKQILQEYIDFQVDVIRR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++R H+L GL IA+ N+DEV+ I++ S N    ++ LM R           
Sbjct: 361 RTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTR----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q   I ++ L RLTG+ R  I +EL  +  ++ +  DIL
Sbjct: 410 ---------------FGLSDIQAEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++  R+L II +E+ +++++    RRT+I     +++ ED I  E+ VVT +++GY+KR+
Sbjct: 455 ANHQRVLDIIIEEVEAIQEKYGDERRTQIENVSGEVDIEDLIPVEESVVTYTNVGYIKRM 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+SVY+AQ RGGKG +G+  R++D VT++ + S+H ++LF ++ G  YK K + LP GS 
Sbjct: 515 PISVYKAQNRGGKGVTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSK 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RG  + N+L L+    I  ++   + +   ++ Y+V  TK G ++R  LS +  + + 
Sbjct: 575 ASRGVNIKNLLELSDDNLIAAMIKVEDFD---DDKYIVMVTKRGKIKRTPLSAYKNVRKR 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ LD  DEI  V      N++L+ T  G  +R   + +RV + R + GVR I L  
Sbjct: 632 GLIAIGLDDGDEIAGVRLTEGNNELLIATHNGMAIRISENDVRVMS-RTAHGVRAIKLRG 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SMA +                                                  
Sbjct: 691 DDYVVSMARIR------------------------------------------------- 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               +   +LTVSE G G+R     + + +R G G+           G +  +  V+++D
Sbjct: 702 ----EGASVLTVSETGLGRRVELESYPVRHRGGSGVLNYK------NGDVCGIKVVDEDD 751

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            II++S  G +IR+   +I +  R ++GV +     D +VV+  R   +E  D AE  E
Sbjct: 752 DIIMISSDGIVIRLRACDISMMGRYSRGVRLMKVTGDNKVVTFTR---TEHDDNAEIAE 807



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 13/252 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +    +  +V V+  G +KR PLS Y+  R+  +G   + + D D +  + +   +  +L
Sbjct: 600 EDFDDDKYIVMVTKRGKIKRTPLSAYKNVRK--RGLIAIGLDDGDEIAGVRLTEGNNELL 657

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     + + S  A     +  + L   +                   V+ 
Sbjct: 658 IATHNGMAIRISENDVRVMSRTA---HGVRAIKLRGDDY------VVSMARIREGASVLT 708

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            ++ G  RR +L  +   +R G   +   + D    ++   +++DI++ +  G  +R   
Sbjct: 709 VSETGLGRRVELESYPVRHRGGSGVLNYKNGDVC-GIKVVDEDDDIIMISSDGIVIRLRA 767

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             I    GR S GVR + +   ++V++     H D      +        ++       E
Sbjct: 768 CDI-SMMGRYSRGVRLMKVTGDNKVVTFTRTEHDDNAEIAEVEKASEEDIRKAQEEEKAE 826

Query: 771 EITSLKNDSSVE 782
            +         E
Sbjct: 827 VLEDDAEPDDQE 838


>gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
 gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049]
          Length = 814

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/900 (38%), Positives = 506/900 (56%), Gaps = 88/900 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+     ++    + I  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MSSDANDANAP-AERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV  N  + K + I G+ MG YHPHG +AIYD L RMAQD+S+R  LI+GQGNFGS+
Sbjct: 60  HEMGVSSNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSM 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA RYTE R+   A  LL D+ KDTVDF  NYD   QEP VL ++ PN+L+NG  
Sbjct: 120 DGDPAAAMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGE+VD  V ++ NPD  ++ LME I+GPDFPTG  I+GR  I +A
Sbjct: 180 GIAVGMSTNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIVGRDAIYSA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG + +R    ++   G   +IV++E+PYQ NKA ++E+IA+ V E +I  I+DLR
Sbjct: 240 YATGRGRLRVRAEYEVDPEEG---RIVISELPYQENKARVVERIADDVNEGKIEGISDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+V+ELKRGA+ DV+ N+L  +  L+S F V  +AL   +P+  +L   L+ 
Sbjct: 297 DESDRNGVRIVVELKRGANIDVVENRLLDH-HLESTFGVINLALVDGQPKVLSLKESLQH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R EVV RR++Y L +A DRAH+L G   A+ N+++VV +IR   + + AR  L + 
Sbjct: 356 YIDHRREVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGLQE- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    +   SE Q   I+ ++L  LT +   +I +E   +
Sbjct: 415 -------------------------SFDFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDV 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     +L+SR +L  +I  EL  VKD+ D  RRT I+E    +  ED I  ED VV
Sbjct: 450 QNTIDYLESVLNSREKLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   Y+KR+P+  +  Q RGGKG  G   ++ D V+ +F  ++H  +L F++ G VY+
Sbjct: 510 VITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARGK+ IN++ L+ GE +T ++   E     ++  +   T++G V+R 
Sbjct: 570 LKTYEIPEMSRTARGKSAINLIDLDDGEELTAVVSTDEFG---DDECITMVTRNGYVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S+F  I  +G IA KL+  DE++ V+      D+++ T+ G  +RF  S +    GR+
Sbjct: 627 CCSEFENILSTGIIAAKLEDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEM-GRS 685

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D+V +M      D                                   
Sbjct: 686 ARGVNGIKLQDDDKVAAMVATDDDDPRS-------------------------------- 713

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+E GFGKRT   ++R  +R GKG+        N  G 
Sbjct: 714 -------------------LLTVTEHGFGKRTKLDEYRTQSRYGKGLIDIKTDDRN--GR 752

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +     V D D ++++S++G ++R+   ++    R TKGV I    +D+RV SV  +   
Sbjct: 753 VSTAKAVTDEDHLVIMSEQGQIMRIRAGDVSQVGRNTKGVTIMGLEEDDRVASVTVVPAE 812



 Score =  107 bits (267), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 55/268 (20%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQE 693
              ++       VV  T+   ++R  + +F   NR GK  +       D +  V      
Sbjct: 496 VTHEDLIPEEDCVVVITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKVFRANSH 555

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +L  T  GQ  R     I   + R + G   I+L   D                    
Sbjct: 556 DYLLCFTNQGQVYRLKTYEIPEMS-RTARGKSAINLIDLDD------------------- 595

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                          ++     +    ++ I  V+  G+ KRT 
Sbjct: 596 ----------------------------GEELTAVVSTDEFGDDECITMVTRNGYVKRTC 627

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             +F   N    GI A  +    +   L+ V   +    +++ ++ G  IR   +E+   
Sbjct: 628 CSEF--ENILSTGIIAAKL---EDSDELIDVDVTDGTGDLVIATEAGMTIRFSESEVSEM 682

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESE 901
            R+ +GV       D++V ++    + +
Sbjct: 683 GRSARGVNGIKLQDDDKVAAMVATDDDD 710



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 70/169 (41%), Gaps = 8/169 (4%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           V +     +  +   + + +       + ++       +S+  +  +   ++L  +E  +
Sbjct: 449 VQNTIDYLESVLNSREKLDSVIADELQEVKDDYDDDRRTSIIEDEGQVTHEDLIPEEDCV 508

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + ++E  + KR    +F   NR GKGI   D  + + +  +   F  N +D ++  +++G
Sbjct: 509 VVITEDDYIKRMPVENFDPQNRGGKGIIGADPKENDRVSKV---FRANSHDYLLCFTNQG 565

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
            + R+   EI   SR  +G   + +      E + +V  +   E  D+ 
Sbjct: 566 QVYRLKTYEIPEMSRTARGKSAINLIDLDDGEELTAV--VSTDEFGDDE 612


>gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg]
 gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss]
 gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14]
 gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A
 gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 833

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/905 (38%), Positives = 533/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG A IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  ++ FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ NP   ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++VI+N+LY++T +Q  F  NM+AL+   P   ++  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVIINRLYKFTDVQVTFGANMLALDKNLPRTMSIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q+ AILELRL +LTGL  D ++ E N L  +I     
Sbjct: 413 ----------------LFGFSEAQSLAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRT I     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTTIEMDAGDVRDIEDIIADESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F+++G  Y  KVW+LP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y++ ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLLLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIVNDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEEDFVVSCQVVTD----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSILINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDFDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSVNTESG 817

Query: 905 EAEST 909
           E E +
Sbjct: 818 ETEES 822


>gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319]
 gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319]
          Length = 836

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/847 (42%), Positives = 528/847 (62%), Gaps = 35/847 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I  V+I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   DKPNSQIREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +LI+G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TG+GSI+
Sbjct: 183 IPPHQLGEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQILGRSGIRKAYETGKGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ S  ++ I+V E+PYQVNKA ++EKIAEL R+K+I  I DLRDESDR G R
Sbjct: 243 VRAKVEIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN LY+ TSLQ+ F +N +AL   +P+   L   L+ ++  +  V+
Sbjct: 303 IVIEVRRDANANVLLNNLYKQTSLQTSFGINTLALVDGQPKVLNLKQCLQYYLDHQVVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ NLD V+ +IR S   + AR  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL R+ I  E  SL   I E   
Sbjct: 414 -----------------FSLSEKQAQAILDMRLQRLTGLEREKIEAEYQSLLALIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL+ VK+  +  RRT I   G   +EDED I R+D+V++++H GY+
Sbjct: 457 ILADEEKVLEIIREELIEVKERFNDGRRTEIVSGGAEIIEDEDLIPRQDIVISLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S Y++QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYKSQRRGGRGIQGMNTNEDDFVEHLLTTSTHDTILFFTNKGKVYRTKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +++GE +  I+   E     ++ Y+ F TK G  +R  LS F  I
Sbjct: 577 YGRTAKGIPIINLLEVDKGEWVNAIIRVDEFV---DDWYLFFTTKQGISKRTPLSSFENI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IA+ L   DE++SV+    + D+++ TK G  +RF  + +R   GR + GV+GI+
Sbjct: 634 RNSGLIALNLREEDELISVKLTDGKRDMVIGTKKGMLIRFNENDVRSM-GRTATGVKGIT 692

Query: 729 LAKGDQVISMAIVLH-ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+VI M I+   +D     +  Y K    +   +     +     N +   G++  
Sbjct: 693 LDSEDEVIGMEILEEQSDVLIITKNGYGKRTPIEEYRVQTRGGKGLRTCNITDKNGDVVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +C     +E+ I+ ++  G   R S  D     R+ +G++   +     +  +  V   
Sbjct: 753 LKCV---SQEEDIMLITVSGVLIRVSVSDISQMGRNTQGVKVIRLGDEEFVSTVAKVQTS 809

Query: 848 NDNDQII 854
            D D+++
Sbjct: 810 EDEDEVL 816


>gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
 gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221]
          Length = 841

 Score =  806 bits (2082), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/898 (39%), Positives = 522/898 (58%), Gaps = 91/898 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++   S+        + SITD MQ +Y+ Y+++VI+ RA+PD RDG KPV RRIL+ M
Sbjct: 1   MSDNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           ++ G+  N+ + KCA + GEV+  YHPHG++++YD L R+AQDW +R  LI  QGNFGS+
Sbjct: 61  LREGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTEC+LQ  A   L D+ +DTVDF PNY  S  EP VL A  PN+L+NG  
Sbjct: 121 DGDSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM TNIP HNL E++D   A+IDNP I+LD L++ I GPDFP G  I G++GI++ 
Sbjct: 181 GIAVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGGFIHGKSGIESY 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG +  RGV+ + +    +E+I+++ IPY VN+A+++ +IAEL++EK I  I+DLR
Sbjct: 241 LKTGRGIVRTRGVAEVVENK-GKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES  +  R+VIELKRGA   VI+NQLY+ T+L+S F V ++AL+  +P++  +  +L  
Sbjct: 300 DESTEE-TRIVIELKRGAIPRVIINQLYKSTALESSFGVILLALDNRRPKQMNIKEMLTC 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R EV+ RRT + L KA  RAH+L G  IA+ N+D+ V+IIR S N E A+  LM +
Sbjct: 359 YIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMAK 418

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E+QT AILELRL +LTGL RD I  E   L
Sbjct: 419 --------------------------YPLTEIQTNAILELRLYQLTGLERDKIEEEYRKL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E  DIL + SRLL +IK+EL  +K++   PRR++++    D+  ED +  E  ++
Sbjct: 453 MELIGELKDILENESRLLEVIKEELGEMKEKYGNPRRSQVIAVDGDISMEDLVPNEGCMI 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+H G++KR  L  YR+Q+RGGKG  G    ++DFV  LF  STH  V+ F + G VY 
Sbjct: 513 TVTHKGFIKRTSLDEYRSQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYV 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           EKV+ +P GS  A+G+A+ N+  L +GE+I  ++   + + S  +  +V AT++G  ++ 
Sbjct: 573 EKVYHIPEGSRTAKGRAMANVFELQEGEKIAAMICVKDFDESAQS--IVLATENGVTKKT 630

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           KLSDF    + G I + +D  D ++     + E+DI+L T   Q +RFP + +R   GRN
Sbjct: 631 KLSDFRNHRKGGIIGINIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLRD-QGRN 689

Query: 721 SVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + GVRGI L  + D+V+++ IV                                      
Sbjct: 690 TRGVRGIKLKSENDKVVAIEIVDD------------------------------------ 713

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  +L     G GKRT   ++R  +R G GI A          
Sbjct: 714 -----------------EAKLLIAGANGLGKRTEFSEYRQQSRGGSGIIAIK------SD 750

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            +     V D D+I++ + KG  +R P++ +R+  RA  GV + +    + ++ + ++
Sbjct: 751 KVAGALSVTDADEIMMFTLKGQAVRSPIDTVRVTGRAASGVKLVNLGNKDELIGISKV 808


>gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381]
 gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381]
          Length = 875

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/934 (39%), Positives = 546/934 (58%), Gaps = 132/934 (14%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I  V + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y
Sbjct: 6   ENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSKSPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R+  ++GQGNFGS+DGD  AA RYT
Sbjct: 66  KKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E+VDG + ++D+ +  L+ +M  I+GPDFPTG VI G+ GI +AY TGRG + IR
Sbjct: 186 PHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIFGKKGIIDAYRTGRGRVKIR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+   +++ I++ E+PYQ NKA ++E+IA LV++K I  I+++RDESDR+G RVV
Sbjct: 246 AKTHIEQ-KSNKDIIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREGIRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ T++++ F V M+A++  +P+ FTLI +LK F+  R+ V++R
Sbjct: 305 IELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDNKEPKIFTLIELLKLFLNHRKTVIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +           
Sbjct: 365 RTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQ----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q  AIL+++L RLTGL R+ I NEL  +  EI+    IL
Sbjct: 414 ---------------FSLSEIQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            S + +  IIK EL+ +K++ + PR T IV+   D+E ED I  E+M+VT++H GY+KRV
Sbjct: 459 KSETLIEQIIKDELIEIKNKFNCPRITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRV 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   Y  Q+RGGKG+  +   D+DF+   F    H +++F ++ G +Y  KV+++P GS 
Sbjct: 519 PSKTYEKQKRGGKGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEGSR 578

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+GKA++N++ L   E+I  I+P  +     NN  + F TK+G V+R  LS++  I  +
Sbjct: 579 TAKGKAVVNLIDLQADEKIMAIIPTTDFN---NNKSLCFFTKNGIVKRTNLSEYQNIRST 635

Query: 672 GKIAMKLDSRDEILSVETCT--------------------QEND---------------- 695
           G  A+KLD  DE+++                          + D                
Sbjct: 636 GIKAIKLDDDDEVVTALIAERDINENLSNEKDLKSNDEIFGDEDELDSNDEILENENSEN 695

Query: 696 ---------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHAD 745
                    I++ T+ G C++F +S +R   GR S GV  I   +  D+V+  A++   +
Sbjct: 696 ENSQEDGTKIIVVTQKGMCIKFMLSNVREI-GRVSRGVTAIKFKEKDDKVVGAAVLQSDE 754

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                               Q IL+VS 
Sbjct: 755 ----------------------------------------------------QEILSVSS 762

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            G GKRT++ ++R++ R GKG+    ++K  + G L+ V  V++N+ ++ ++  G +IRV
Sbjct: 763 NGIGKRTAAGEYRLTKRGGKGVICMKLTK--KTGELIGVVIVDENEDLMALTTSGKMIRV 820

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +  IR A R T GV++ +    + VVS+    +
Sbjct: 821 DMQSIRKAGRNTSGVIVVNVD-GDEVVSIACCPK 853


>gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
 gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277]
          Length = 872

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/952 (38%), Positives = 553/952 (58%), Gaps = 133/952 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +  E  + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MENIFENNQDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNNLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  
Sbjct: 61  GSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+      +L D+ KDTVDF PNYD    EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + V++N +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIFGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IVV E+PYQ NKA ++E+IAELV+EK+I  I+++RDESD+
Sbjct: 241 GRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK F+  R
Sbjct: 300 DGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  +AR  L+ +     
Sbjct: 360 KTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL++RL++LTGL R+ +  EL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +IK ELL +K++   PR T IV+   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N++ L   E+I  I+P  +      +  + F TK+G V+R  LS+F
Sbjct: 574 IPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFA---ESKSLAFFTKNGIVKRTNLSEF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++      E +                              
Sbjct: 631 KNIRSIGVRAINLDENDELVTALIVEGEEEPINLIDELGVETEINEIEAIEAQIDEENSE 690

Query: 696 ----------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISM 738
                           + + TK G C++F +S +R   GR + GV GI   + GD+V+  
Sbjct: 691 ENDENAAEGSDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAGDEVVGA 749

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A++ + D                                                    Q
Sbjct: 750 AVIENND----------------------------------------------------Q 757

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L++S+KG GKRT++ ++R++NR GKG+    ++  N  G L+ V  V+D   ++ ++ 
Sbjct: 758 EVLSISQKGIGKRTTAEEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDDEQDLMALTS 815

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            G +IRV +  IR A R T GV++ +   D+  VS+ +  +++  ++  S E
Sbjct: 816 SGKMIRVDMQSIRKAGRNTSGVIVVNVDGDDV-VSIAKCPKADDGEDESSEE 866


>gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
 gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940]
          Length = 823

 Score =  806 bits (2081), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/906 (40%), Positives = 518/906 (57%), Gaps = 86/906 (9%)

Query: 1   MTEHII--SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M+  +        +   +  V I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+
Sbjct: 1   MSSDVPEGPGVTADAARVEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M +MGV     + K + + GEVMG YHPHG++AIYD L RMAQD+S+R  L++GQGNFG
Sbjct: 61  AMHEMGVSSGSSHRKSSSVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGDP AA RYTE R+   A  LL D+ KDTVDF+ NYD   +EP VL + +PN+LVNG
Sbjct: 121 SMDGDPAAAMRYTEARMAPIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+TNIP HNLGEV+D  + +IDNPD ++  LME ++GPDFPTGA I+G+  I 
Sbjct: 181 SSGIAVGMSTNIPPHNLGEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIVGKNAIH 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AYATGRG + +R     E+T   R +IV+TEIP+Q NKA M+E+IA+ V E  I  ++D
Sbjct: 241 AAYATGRGRLTVRAEYEFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESDR G RVVIE KRGA+ DV+ NQL  +  L+S F V  +AL   +P   TL   L
Sbjct: 301 LRDESDRDGVRVVIECKRGANVDVVENQLLDH-HLESTFGVINLALVDGEPRVLTLKETL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +VA R+EVV RR+++ L +A DRAH+L G   A+ N+D VV +IR S + + A+  L 
Sbjct: 360 EEYVAHRKEVVRRRSEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALE 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                          T   S  Q + I+ ++L  LT +   ++ +E  
Sbjct: 420 E--------------------------TFDFSTEQAQHIVRMQLGSLTSMEAAEVEDEYE 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  EI+    IL+  S LL +IK EL +VKDE D  RRT IVE    +  ED I  E+ 
Sbjct: 454 EVEAEIERLETILNDESELLDVIKDELRAVKDEYDDDRRTSIVEDDGTVTREDLIPEEEC 513

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V V+   Y+KR+P   + AQ RGGKG  G   ++ D V+ +F  +TH  +L F++ G V
Sbjct: 514 LVVVTEDDYIKRMPADRFDAQHRGGKGIIGADPKEGDRVSTVFRANTHDYLLAFTNHGQV 573

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ + + +P  S  ARGK+ +N+++ + GE IT ++   E +   ++  +  AT+ G V+
Sbjct: 574 YRLRTYEIPEMSRTARGKSAVNLINFDDGEEITAVVSMDEFD---DDECITMATRQGYVK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R   S+F  I  +G IA KL+  DE++       E+D+++ T+ G  +RF  +  R   G
Sbjct: 631 RTCCSEFENILSTGIIAAKLEDGDELVDAVVTDGESDLVIATEDGMTIRFDETEARQM-G 689

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GVRGI L  GD V  +      D                                 
Sbjct: 690 RTARGVRGIDLRDGDNVAGVVATDEHD--------------------------------- 716

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                             E+ +LTV+E+G+GKRT   ++R  +R GKG+        N  
Sbjct: 717 ------------------ERALLTVTERGYGKRTPLSEYRTQSRYGKGLIDIKTGDRN-- 756

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G + AV  V ++D +I++S  G ++R PV ++    R T GV I   A D+ V SV+ I 
Sbjct: 757 GGVTAVNAVAEDDHVIVMSATGQIMRCPVEDVSTVGRNTMGVTIMDVAADDTVASVDVIP 816

Query: 899 ESEIVD 904
            + I D
Sbjct: 817 GTAIED 822


>gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58]
 gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58]
          Length = 829

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/893 (38%), Positives = 518/893 (58%), Gaps = 91/893 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 4   NEEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKH 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+I G+  G YHPHG + IY  L RMAQ W++R  L++GQGNFGS+DGDP AA RYT
Sbjct: 64  RKCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  +A FL++DL KDTVD   NYD +  EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 124 EARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+++  + ++ NP   ++ +ME++ GPDFPTG +I G  GI + Y TGRG I +R
Sbjct: 184 PHNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIICGHEGICSTYHTGRGKIKVR 243

Query: 252 GVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              H+E+ +    E IV+TEIPY VNK+ ++E+IA+LV +K +  I+D+RDESD++G RV
Sbjct: 244 ARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRV 303

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+G S++V++N+LY++T +Q+ F  NM+AL+   P    +  ++ A++  R EV+ 
Sbjct: 304 VLELKKGESSEVMINRLYKFTDVQTTFGANMLALDKNLPRTMNIHRMISAWIRHRAEVLR 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ LNKA  RAH+L G   A++ LD VV+ I+ S + E A++++++           
Sbjct: 364 RRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIE----------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AILELRL +LTGL  +  R E + L  +I     +
Sbjct: 413 ---------------LYGFTDAQAVAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRV 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+    +  II+ EL  +     TPR+T I        + ED I  E +++T+S   YVK
Sbjct: 458 LADEELVKDIIRTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+ V+R QRRGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP 
Sbjct: 518 RMPIKVFREQRRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPE 577

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G  +++GK+LIN L  +  GE++  I+     E   N  ++  ATK G V++  L  F  
Sbjct: 578 GERRSKGKSLINFLEGIRPGEQVAAILNVKSFE---NADFLFLATKQGVVKKVPLDAFSN 634

Query: 668 INRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
             + G  A+++D  DE++ +     + + ++L TKLG  VRFP   +R   GR + GVRG
Sbjct: 635 PRKKGIRALEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPM-GRAARGVRG 693

Query: 727 ISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           +SL    D V+S  IV                                            
Sbjct: 694 VSLKNQEDCVVSCQIVTDN----------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       Q +L V E GFGKR+   DFR +NR G G+R+  +++ N  G ++   
Sbjct: 713 ------------QSVLVVCENGFGKRSLVSDFRETNRGGIGVRSILINERN--GDVLGAV 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           PV DND I+L+S +G  IR+ + ++RI  R+T+GV +      + +V++ER+ 
Sbjct: 759 PVADNDSILLMSGQGQAIRISMQDVRIMGRSTQGVRLVHLKDGDVLVAMERLP 811



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           R  +    +   + +  +           +++   E  I+T+S   + KR     FR   
Sbjct: 469 RTELQDLVKYHKTPRKTTIEFDADDVRDIEDIITDESVIITISGDDYVKRMPIKVFREQR 528

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G+   D+ K +    L AV+  +  D +++ ++ G    + V  +    R +KG  
Sbjct: 529 RGGHGVSGFDMKKGS--DFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPEGERRSKGKS 586

Query: 882 IFS----TAKDERVVSVERIRESEIVD 904
           + +        E+V ++  ++  E  D
Sbjct: 587 LINFLEGIRPGEQVAAILNVKSFENAD 613


>gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR]
 gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR]
          Length = 814

 Score =  805 bits (2080), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/827 (42%), Positives = 513/827 (62%), Gaps = 32/827 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I  ++I DEM+NSYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 6   EFEHGKILPININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDK 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD++ R  L++G GNFGS+DGD  AA R
Sbjct: 66  PHKKSARLVGEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    +L D+ KDTVDF PN+D + +EPVVL AR PN+L+NG  GIAVGMATN
Sbjct: 126 YTEARMAKITQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++DG + +IDNPD     LM  ++GPDFPTG +I+GR GIK+AY TGRG+I 
Sbjct: 186 IPPHNLGEIIDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIMGREGIKSAYKTGRGAIR 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  S  + +I+V E+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G +
Sbjct: 246 IRAKTTIETMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQ 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL++ A+  V+LNQL+++T LQ  F V M+AL   +P+   L   L  ++  +++V+
Sbjct: 306 IVIELRKDANPQVVLNQLFKHTQLQETFGVIMLALVDGQPKVLNLRDALFYYLEHQKDVI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L+KA  RAH+L GL IA+ +LDEV++ IR S   E AR  LM +         
Sbjct: 366 TRRTRFELDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDK--------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL +LTGL R+ +  E  +L   I     
Sbjct: 417 -----------------FGLSEKQAQAILDMRLQKLTGLEREKLEEEYKNLLERIAYLKA 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L++   +LGIIK+ELL +K++ + PRRT I    ++++ ED I  EDMV+T++HLGY+K
Sbjct: 460 VLANEHMVLGIIKEELLVIKEKYNDPRRTEISINDVNIDTEDLIAEEDMVITITHLGYIK 519

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR Q+RGG+G + +  ++EDFV  LFI +TH  +LFF++ G VYK KV  +P  
Sbjct: 520 RIALDTYRNQKRGGRGVTAMGTKEEDFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEA 579

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N+L ++  E+IT ++P    ++     Y++  T+ G +++  L ++    
Sbjct: 580 GRQAKGTAIVNLLYISGDEKITAVIPVRSFDT---EEYLLTITRKGVIKKTPLVEYGSTR 636

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ LD  DE++ V+    +N++++ TK G+ +RF    +R   GR + GVRGISL
Sbjct: 637 KDGIIALSLDENDELIDVKLTNGKNEVIIGTKEGKAIRFAEEEVRSM-GRAARGVRGISL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D+VI +  +                 S               +    +         
Sbjct: 696 SEKDEVIGIDTIEQGADVLVVTEKGFGKRSHVDDYRRQGRGGKGIMTIRPTKRNGHLVGI 755

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                  E  ++ ++ +G   R          RS +G+R   + + +
Sbjct: 756 KVVKPGDE--LMLITAEGIIIRLDVDGISTMGRSTQGVRLMRLDEND 800


>gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
 gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10]
          Length = 828

 Score =  805 bits (2079), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/896 (40%), Positives = 547/896 (61%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GVRGI L + D V+   ++                                     
Sbjct: 686 RSARGVRGIRLNENDFVVGAVVINDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 88/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +   A       +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562
           + ++  +    + +    +L+         +++V  +  S      +  L   +      
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K    + ++    +    I   + ++L   S      +   RL         +      
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856
           + +   ++ G  KRT+  +F  SNRS  GIRA  + +      LV+   V+ N   +++ 
Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIA 667

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+ P+ ++R   R+ +GV      +++ VV    I + 
Sbjct: 668 SYLGIFIKFPLEDVREIGRSARGVRGIRLNENDFVVGAVVINDD 711


>gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1]
 gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1]
          Length = 839

 Score =  805 bits (2078), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/836 (40%), Positives = 516/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPRSNVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  ++ D+ KDT+D+R NYDGS +EP+V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+  +P+I +  LM+ I GPDFPT  +I+GR+GI+ AY +G+GSI 
Sbjct: 183 IPPHQLGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIVGRSGIRRAYESGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  +  +E I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R
Sbjct: 243 MRAKVRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A+V+LN LY+ T+LQ+ F +N++AL   +P+   L   L  ++  ++ V+
Sbjct: 303 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVDGQPKVLNLKQCLYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ +IR S   + AR  LM+          
Sbjct: 363 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLME---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL++RL RLTGL RD I NE   L   I E   
Sbjct: 413 ----------------NFSLSEKQAQAILDMRLQRLTGLERDKIENEYQELVKLIAELKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV  G+  +EDED I RE++++T++H GY+
Sbjct: 457 ILADEEKVLEIIREELNEIKERFNDERRTEIVAGGIEQIEDEDLIPRENIILTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YR+Q+RGG+G  G+   ++DFV  L   STH ++LFF++ G  +K K + +P 
Sbjct: 517 KRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFKAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +++GE +  ++   E     ++ Y+ F TK G  +R  +SDF  I
Sbjct: 577 FSRTAKGIPIINMLGVDKGEWVNAMIRIEEFV---DDWYLFFTTKQGISKRTPVSDFANI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV+      DI++ T+ G  +RFP + +R   GR + GV+GI+
Sbjct: 634 RTNGLIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSM-GRTATGVKGIN 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+ M I+   D             +                    ++     E 
Sbjct: 693 LDSEDIVVGMEILEEKDDVLVVTEKGFGKRTPAEEYR--IQTRGGKGLKTCNITDRNGEL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
              +    E+ ++ ++  G   R    D  I+ R+ +G++   + + + +  +  V
Sbjct: 751 ISVKAVTGEEDLMLITAHGVLIRMDVNDISITGRNTQGVKLIRLDENSSVATVAKV 806



 Score = 76.0 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 69/403 (17%), Positives = 140/403 (34%), Gaps = 35/403 (8%)

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L   +A+ ++V+ IIR   N    R    +R+     +   I+ I+D       +  + L
Sbjct: 454 LKAILADEEKVLEIIREELNEIKERFNDERRT---EIVAGGIEQIEDEDLIPRENIILTL 510

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +      I  L ++      R     +      +      + +S    +     +  + K
Sbjct: 511 T--HNGYIKRLPVSTYRSQKRGGRGIQGMGTNEDDFVEHLLTTSTHDTILFFTNKGKAFK 568

Query: 510 DE---LDTPRRT------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +   +    RT               E +  M   +  V +  +   +  G  KR P+S
Sbjct: 569 AKGYEIPEFSRTAKGIPIINMLGVDKGEWVNAMIRIEEFVDDWYLFFTTKQGISKRTPVS 628

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +   R  G     + +R+ D +  + +      ++  +  G + +     +      A 
Sbjct: 629 DFANIRTNG--LIAINLRENDELISVKLTDGSKDIIIGTQKGMLIRFPETDVRSMGRTAT 686

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN         + +       E       V+  T+ G  +R    ++    R GK 
Sbjct: 687 GVKGIN---------LDSEDIVVGMEILEEKDDVLVVTEKGFGKRTPAEEYRIQTRGGKG 737

Query: 675 AMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
               +  D   E++SV+  T E D++L T  G  +R  ++ I    GRN+ GV+ I L +
Sbjct: 738 LKTCNITDRNGELISVKAVTGEEDLMLITAHGVLIRMDVNDI-SITGRNTQGVKLIRLDE 796

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              V ++A V   +   ++    +   S+++       E    
Sbjct: 797 NSSVATVAKVEKDEEKEEDIPVDLTEESSEQAAEDSADETDNE 839


>gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40]
 gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A
 gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus]
 gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40]
          Length = 862

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/935 (39%), Positives = 546/935 (58%), Gaps = 124/935 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I SS+++    I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENIFSSNQD----IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  ++GQGNFGSV
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M  I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIEK   +++ IVV E+PYQVNKA +   IA+LV+EK I  I+++R
Sbjct: 237 YKTGRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK 
Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +
Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q+ AIL++RL++LTGL R+ +  EL  +
Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEI 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++   IL S + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 LELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F   +H +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++SL   E+I  I+P  + +    +  + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFD---ESKSLAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695
            LS+F  I   G  A+ LD  DE+++V     E D                         
Sbjct: 627 NLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSE 686

Query: 696 --------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADA 746
                   +   TK G C++F ++ +R   GR S GV  I   +  D+V+   ++ +   
Sbjct: 687 NSLESGKMLFAVTKKGMCIKFALNKVRQI-GRVSRGVTAIRFKENLDEVVGAVVIENDS- 744

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                              Q IL+VS+K
Sbjct: 745 ---------------------------------------------------QEILSVSQK 753

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G GKRT++ ++R+ +R GKG+    ++   +   LV V  V++   ++ ++  G +IRV 
Sbjct: 754 GIGKRTTADEYRLQSRGGKGVICMKLTPKTK--DLVGVVMVDEEMDLMALTSSGKMIRVD 811

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +  IR A R T GV++ +    + VVS+ R  + E
Sbjct: 812 MQSIRKAGRNTSGVIVVNVD-GDEVVSIARCPKEE 845



 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 95/300 (31%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  TC   + ++  T
Sbjct: 503 PNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVT 562

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  ISL   +++ ++      D            
Sbjct: 563 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFD------------ 609

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                 + + +   ++ G  KRT+  +F
Sbjct: 610 --------------------------------------ESKSLAFFTKNGIVKRTNLSEF 631

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQ------------------------ 852
              N    G++A ++   ++   LV V   N   D+                        
Sbjct: 632 --KNIRSIGVKAINL---DDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSE 686

Query: 853 --------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIV 903
                   +  V+ KG  I+  +N++R   R ++GV      ++ + VV    I      
Sbjct: 687 NSLESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKENLDEVVGAVVIENDSQE 746



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 100/300 (33%), Gaps = 79/300 (26%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D ++++   + + +   + + G   +F +S ++      S  +  + L+     
Sbjct: 387 IALDNIDAVINLIKTSADTN---SARDGLMAKFGLSELQ------SNAILDMRLSKLTGL 437

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +  +L      D  +     +    R    + +        + +  +  +  
Sbjct: 438 EREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDID 497

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------- 826
            ++L   E  ++T++ +G+ KR  S  +    R GKG                       
Sbjct: 498 VEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 557

Query: 827 ------------IRATDVSKINEIGA---LVAVFPVNDNDQIILV--------------- 856
                       ++   + + +       +V +  +  +++I  +               
Sbjct: 558 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKSLAFF 617

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERI---RESEIVDEAESTE 910
           +  G + R  ++E   IR       GV   +   ++ +V+V       +    D  E  E
Sbjct: 618 TKNGIVKRTNLSEFKNIRSI-----GVKAINLDDNDELVTVVIANSEPDESYDDSFEDGE 672



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 98/262 (37%), Gaps = 14/262 (5%)

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           + L+   +    +RT + E           +  D    +  +      P   Y      G
Sbjct: 612 KSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELVTVVIANSEPDESYDDSFEDG 671

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           +G S +    ED   +     +   +   +  G   K  + ++      +RG   +  + 
Sbjct: 672 EGVSNLQTISEDNSENSLE--SGKMLFAVTKKGMCIKFALNKVRQIGRVSRG---VTAIR 726

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSR 681
             +           E+    ++  ++  ++ G  +R    ++        G I MKL  +
Sbjct: 727 FKENLDEVVGAVVIEN----DSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTPK 782

Query: 682 DE-ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            + ++ V    +E D++  T  G+ +R  + +IR  AGRN+ GV  +++  GD+V+S+A 
Sbjct: 783 TKDLVGVVMVDEEMDLMALTSSGKMIRVDMQSIR-KAGRNTSGVIVVNV-DGDEVVSIAR 840

Query: 741 VLHADADYDERICYMKHMSAQR 762
               ++D D+ +          
Sbjct: 841 CPKEESDDDDIVADDTQEQDME 862


>gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211]
 gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211]
          Length = 818

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/896 (38%), Positives = 512/896 (57%), Gaps = 93/896 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             V IT+E++ +++ YA+NVI+ RA+PD+RDGLKPVHRRI++ M+Q G+  N+K+ K A 
Sbjct: 5   LPVDITNEVKTNFINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAA 64

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + GEVM KYHPHG++ IYDA+ R+ Q W++R  +++ QGNFGS+DGD  AA RYTE R+ 
Sbjct: 65  VVGEVMKKYHPHGDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMT 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL DL K+TVD +PNYD +  EP VL +  PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 125 KLAEELLADLEKETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLT 184

Query: 197 EVVDGCVAVIDNPDID---------LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           E+V+G +++ID P            LD LM  ++GPDFPTG  I  R+GI++AYATG   
Sbjct: 185 EIVNGLISIIDKPGRTAEEKAAQVSLDELMVHVQGPDFPTGGRIS-RSGIRDAYATGHAG 243

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-Q 306
           + +RG + I++    R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR +
Sbjct: 244 LKVRGKARIDE-KNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             R+V+ELKRGA   ++LNQLY+YT LQ+ F+V  +++   +P+   L+  ++ F+  R 
Sbjct: 303 PVRIVVELKRGAIPTLVLNQLYKYTQLQTTFTVINLSIVNGEPKVLPLLDTMRYFLEHRA 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRT Y L KA++RAH+L GL  A+ ++DEV+ +IR S     AR  LM R      
Sbjct: 363 DVVTRRTAYELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ +AIL++RL RL GL R+ ++ E N L   I  
Sbjct: 417 --------------------FQLTDVQAQAILDMRLQRLVGLEREKLQGEYNELMTLIDR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL     L   IK+EL  ++D     RR+ I +   D+  ED I  EDMV+T++  G
Sbjct: 457 LKAILGDEKLLWREIKKELKDIRDRYGDERRSTITQLEEDISKEDLIAVEDMVITMTRAG 516

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  L  YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G ++ EK++ L
Sbjct: 517 YLKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDL 576

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P     A+G  + N+L   +             +        VFATK G +++ ++ D+ 
Sbjct: 577 PEAGRDAKGTHIKNLLPGLRENESVA--SVLAIKDFDEAGSFVFATKRGMIKKTQIRDYG 634

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I  +G IA+ L   D ++ V      + I+L T  GQ +RF  + +R   GR + GV G
Sbjct: 635 NITSAGLIALNLQDDDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVRD-TGRATQGVIG 693

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L  GD V+SMA+V   D D +                                     
Sbjct: 694 IRLRDGDHVVSMAVVPGDDEDSE------------------------------------- 716

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L +SE G GKRT   D+    R G G+   DV++  + G LVA+  
Sbjct: 717 -------------LLAISECGLGKRTPVSDYPSKGRGGLGVITLDVTE--KTGKLVALAR 761

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           V  ++++++++ KGT+IR  V E+R+  R  +GV I +    + V+S   IR+ + 
Sbjct: 762 VAGDEELMVLTQKGTVIRTRVEEVRVTGRNAQGVKIINLGDGDCVISAFPIRKEDE 817



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 66/266 (24%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  T+ G ++R KL  +   +R G+ +   KL   D    V   +  + +L  T  G+ 
Sbjct: 509 VITMTRAGYLKRTKLDAYRAQSRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRL 568

Query: 706 VRFPISAIRVFAGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSA 760
               I  +   AGR++ G   I      L + + V S+  +   D               
Sbjct: 569 FHEKIYDL-PEAGRDAKGTH-IKNLLPGLRENESVASVLAIKDFD--------------- 611

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RI 819
                                                 F+   +++G  K+T   D+  I
Sbjct: 612 ----------------------------------EAGSFV-FATKRGMIKKTQIRDYGNI 636

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           ++    G+ A ++        L+ V    D D I+L +  G  +R   NE+R   RAT+G
Sbjct: 637 TS---AGLIALNLQD---DDGLIGVGIQRDGDHIVLATSDGQAMRFGANEVRDTGRATQG 690

Query: 880 VVIFSTAKDERVVSVERIRESEIVDE 905
           V+       + VVS+  +   +   E
Sbjct: 691 VIGIRLRDGDHVVSMAVVPGDDEDSE 716


>gi|325109095|ref|YP_004270163.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
 gi|324969363|gb|ADY60141.1| DNA gyrase subunit A [Planctomyces brasiliensis DSM 5305]
          Length = 952

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/914 (37%), Positives = 513/914 (56%), Gaps = 25/914 (2%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E+  S     +  I  + I DEMQNSYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  
Sbjct: 8   ENQNSPQVPGDDRIAQLDIQDEMQNSYLTYAMSVIISRALPDVRDGLKPSQRRILVAMND 67

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  N    KC++I+GE MG YHPHG+ AIY  L RMAQDW++R +LI+ QGNFGS+ G
Sbjct: 68  LNLGPNGSRTKCSKITGETMGNYHPHGDQAIYPTLVRMAQDWAMRQVLIDKQGNFGSLAG 127

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            PPAA RYTE RL   A  +L D+  +TVDF P YD    EP VL +R+PN+LVNG  GI
Sbjct: 128 LPPAAHRYTEARLSPVASEMLADIKSETVDFIPTYDQLRLEPTVLPSRFPNLLVNGSSGI 187

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMAT+IP HNL EV +    VID P+  +D + +++ GPDFPTG VI G+ G +  Y+
Sbjct: 188 AVGMATSIPPHNLTEVAEAVKMVIDEPECTIDEIAQVMPGPDFPTGGVICGQFGTRQGYS 247

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGR +I +R  +H +      + IVVTEIPY   +  + EK+  LV+++R+  IA + D 
Sbjct: 248 TGRSTITLRAKTHFDTEKQ-SDVIVVTEIPYMETRDRIREKLEALVKDERVKGIARVVDL 306

Query: 303 SD----RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D         + I LKR A  +V+LNQLY+Y+ LQ+ FS+ ++AL G +P+  ++  +L
Sbjct: 307 TDRKIPNWQVHLQIVLKRDADKEVVLNQLYKYSPLQTTFSIILLALVGNRPQLLSIKDML 366

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R  V+ RRT++ L++AR R H + G+ IA  N+DEV+  IR SP+   A+  L 
Sbjct: 367 LEFIRHRVTVIRRRTEHQLSEARKRKHTVEGMLIAQLNIDEVISTIRNSPSRSEAKNRLR 426

Query: 419 QRSWNASDIKDLIDLID--DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                A  I   +      +     G+     LS  Q  AI+ ++L  L  L R+ + +E
Sbjct: 427 DIKVPAEMIARALGERGFQEFQREQGTSDEYSLSLNQAEAIVSMQLGSLANLEREKLGDE 486

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  EI ECL +LS  + +   +++E+  ++ +    RRT I E  L   ++D ++ E
Sbjct: 487 HRKLLEEIDECLHLLSDEAHIRAAVREEMDDLQRKYPDKRRTEISEIELTDVNKDELIAE 546

Query: 537 -DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
             MVVT++  GY+KR  L+ Y+AQ RGG+G +G    +ED +  +F+ STH+ +LFF++L
Sbjct: 547 APMVVTLTQRGYIKRTELTAYKAQNRGGRGITGAKSDEEDPIRHVFVASTHSYLLFFTNL 606

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY +KV+ LP+ +  A+G+AL+N+LSL  GE +   +   E +   +  +++ ATK G
Sbjct: 607 GRVYWQKVYDLPLQNRTAKGRALVNLLSLADGEEVYNCIDVREFD---DERFLMMATKKG 663

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++  LS + +  R G IA+KLD  DE++ V     E+D++++T  G  +RF     R 
Sbjct: 664 VVKKTSLSAYSRPLRGGIIAIKLDDDDELIDVVKVAPEDDLIISTANGMSIRFNHDDARA 723

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN+ GV+G+SL K D V+ M +                  +      + D EE    
Sbjct: 724 M-GRNTRGVKGVSLGKDDHVVGMVVADEQMCLLTACENGYGKRTPFGFGGASDAEEAPVD 782

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +      + S +   +    E             R++   +R   R GKG+R    ++ 
Sbjct: 783 DDAVDSTEDSSADSSDDSSSDEPDT----------RSNM-RYRRQKRGGKGLRDIRTTER 831

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N  G  V +  V D+D ++++S  G + R+   +I    R T+GV I      +R+V + 
Sbjct: 832 N--GKAVDILAVADDDDVLIISSAGKIQRIRAADISQVGRNTQGVRIMRMGDGDRLVGLA 889

Query: 896 RIRESEIVDEAEST 909
           RI     VD  E  
Sbjct: 890 RIPAEINVDSDEEE 903



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 16/265 (6%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED ++  +  G   R      RA  R  +G  GV +  +D V  + +      +L   
Sbjct: 699 APEDDLIISTANGMSIRFNHDDARAMGRNTRGVKGVSLGKDDHVVGMVVADEQMCLLTAC 758

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G+  +           +        + S       ++     ++  + +N+      +
Sbjct: 759 ENGYGKRTPFGFGGASDAEEAPVDDDAVDSTEDSSADSSDDSSSDEPDTRSNMRYRRQKR 818

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G   R        I  + +         + + +     ++D+L+ +  G+  R   + I
Sbjct: 819 GGKGLR-------DIRTTER-------NGKAVDILAVADDDDVLIISSAGKIQRIRAADI 864

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
               GRN+ GVR + +  GD+++ +A I    + D DE    +   +A+    S      
Sbjct: 865 -SQVGRNTQGVRIMRMGDGDRLVGLARIPAEINVDSDEEEVPVDDAAAEANGESTPAATD 923

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
            +   D             +    E
Sbjct: 924 AAPAADGDATPAEPTAEAGDDSDAE 948


>gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 844

 Score =  804 bits (2077), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/848 (43%), Positives = 524/848 (61%), Gaps = 20/848 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K I  ++I  E+ +SYL YA++VI+GRA+PD+RDG KPVHRR+L+ M  +G +WNK Y K
Sbjct: 6   KEIIPINIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YDA+ RMAQ +SLR +L++GQGNFGSVDGD PAA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEI 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH +L DL KDTV+F PNYD + Q P V+  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EV+  C+A ID+ +I ++ LM+ + GPDFPT  +I G  GI+ AY TGRG I IR  
Sbjct: 186 NISEVIAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSKGIEQAYGTGRGRIYIRAK 245

Query: 254 SHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++IE      R+ I+V EIPYQVNK  ++EKIAELV+EKR+  I+ LRDESD++G R++I
Sbjct: 246 ANIEVDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRILI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+VILNQLY  T LQ  F +NMVAL+  +P+  TL  IL+AF+  R EVV RR
Sbjct: 306 ELKRDAIAEVILNQLYSLTQLQVSFGINMVALDHGQPKVMTLKDILRAFIRHRREVVTRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KARDRAH+L  LA+A+AN+D ++++IR + NP  A+  L+ ++W    +  ++D
Sbjct: 366 TLFELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSMLD 425

Query: 433 LIDDSSYTIGSD----------GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            + D       +          G  + +E Q +AIL+LRL +LTGL  D++ NE   L  
Sbjct: 426 CVGDEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKELLN 485

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I E   ILS   RLL +I++E LS+K +   PRRT I     D+  ED I +ED+VVT+
Sbjct: 486 AIHELQKILSDPDRLLEVIREEFLSIKAQYHDPRRTEIKINTADIHLEDLIPQEDVVVTL 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH GY+K  PLS Y AQ RGGKG+S    +DEDF+  L + +TH ++L FSS G +Y  K
Sbjct: 546 SHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGRLYWLK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V++LP  S  +RG+ ++N+L LN  ERIT I+P    E+     YV  AT  G V++  L
Sbjct: 606 VYQLPEASRGSRGRPIVNLLPLNPDERITAILPIKNYET---GQYVFMATACGVVKKIAL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +F +   +G   + LD  DE++ V+     N+++L +  G+ +RF    +R   GR + 
Sbjct: 663 LEFSRPRSTGIYTLNLDDGDELIGVDLTDGTNEVMLFSSKGKVIRFSEDDVRAM-GRTAR 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV GI LA+ D+V+S+ I                  +++    +     +  +     V 
Sbjct: 722 GVGGIRLAQEDRVVSLIIPRGDGDILTVTANGYGKKTSKEEYPTRSRNGMGVIS--IKVN 779

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
           G            +   ++ +++ G   RT + +    +R+ KG+         +   +V
Sbjct: 780 GRNGNVVGAIQVDENDHLMMITDAGTLVRTRASEMNSISRNTKGVTLIRTQNNEK---VV 836

Query: 843 AVFPVNDN 850
            +  + ++
Sbjct: 837 GLQRLVED 844


>gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 865

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/900 (38%), Positives = 525/900 (58%), Gaps = 90/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + I   ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+
Sbjct: 5   ENEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYT
Sbjct: 65  RKCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  A+  L++DL K+TV+  PNYD + +EP V  A++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++   + V+ NP + +D +M ++  PDFPTG +I G  GIK A+ TGRG +++R
Sbjct: 185 PHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGGIICGYRGIKEAFHTGRGRLLLR 244

Query: 252 GVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            V  +E+     D+++++V EIPY VNK+ ++E+IA+L+  K I  IADLRDESD+ G R
Sbjct: 245 AVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IELKRG   +VILNQL++Y+ LQ  F  NM+AL+   P+   +  ++ A+V  R EVV
Sbjct: 305 ILIELKRGEIVEVILNQLFKYSDLQITFGCNMLALDKGLPKVMNVKQLIAAWVDHRIEVV 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L G   A+ ++DEVVR+IR S N E AR EL+QR         
Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQR--------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E Q  A+L+L+L +LTGL  + I  E   L  +I     
Sbjct: 416 -----------------FDLTERQANAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRA 458

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S + +  II++ELL ++    + R+T+I+    ++  ED I  E +++T+S   Y+K
Sbjct: 459 VLASEAMVRDIIREELLEIQKNHRSGRKTQIIAAESEVNMEDLIANESVIITISEDDYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P+  +R QRRGG+G +G+ ++  ED +  L++ STH  +L F++LG  Y  KVW++P 
Sbjct: 519 RMPVDTFREQRRGGQGIAGMHLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPE 578

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +++GK LIN+L  +   E+I T++     E      Y++ ATK G V++ +LS+F  
Sbjct: 579 TGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQ---AYILMATKKGIVKKTELSEFSH 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R G  A+ +   DE+++    +    I+L T  G  VRF    +R   GR + GV+G+
Sbjct: 636 PRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQGKVRPM-GRTARGVKGV 694

Query: 728 SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L    D V+    V   +                                         
Sbjct: 695 TLKDDTDYVVGCEAVNGTET---------------------------------------- 714

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL V E GFGKR++  DFR +NR G G+R+   S+ N  G +V    
Sbjct: 715 -------------ILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERN--GNVVGALC 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V D D ++++S +G  +R+ + ++R+  R T+GV + +  + + +V+++++  S+ VD A
Sbjct: 760 VTDEDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDVDNA 819


>gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
 gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228]
 gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli
           JV20]
          Length = 855

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/935 (39%), Positives = 554/935 (59%), Gaps = 117/935 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MENIFNKDSDIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  
Sbjct: 61  GSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E+VDG + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + IR  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR
Sbjct: 241 GRVKIRAKTHIEK-KSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    N  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFD---ENKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ +                              
Sbjct: 631 QNIRSVGVKAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKM 690

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICY 754
           +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +         
Sbjct: 691 LFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--------- 740

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                                      Q IL++S KG GKRT++
Sbjct: 741 -------------------------------------------QEILSISAKGIGKRTNA 757

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            ++R+ +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV +  IR A 
Sbjct: 758 GEYRLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMQSIRKAG 815

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           R T GV I    +++ VVS+ +  + E+ DE    
Sbjct: 816 RNTSGV-IVVNVENDEVVSIAKCPKEELEDEISDE 849


>gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2]
 gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2]
          Length = 854

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 367/836 (43%), Positives = 523/836 (62%), Gaps = 35/836 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I +  I  EM+ S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   DQNNSQIINRDIGVEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+YD + RMAQD+SLR +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  +L DL K+TVDF PNYDG   EPVVL ARYPN+LVNG GGIAVGMATN
Sbjct: 123 YTEARLSKIAMEMLRDLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG  A+I+NPDI    LM+ I+GPDFPT   ILGR+GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGVQALIENPDITPMELMDYIQGPDFPTAGYILGRSGIRQAYQTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+   ++ +I+V E+PYQVNKA ++EKIAELVR+KRI  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEIG-NKARIIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T++QS F +NM+A+   +P+   L  +L  ++  + EV+
Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTAMQSNFGINMLAIVNNEPKILNLKDVLYYYLKHQIEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  L++R         
Sbjct: 362 RRRTEFDLKKAEARAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+  Q +AIL++RL RLTGL R+ I NE N L  +I E  +
Sbjct: 413 -----------------FSLTLEQAQAILDMRLQRLTGLEREKIENEYNELIQKIMEYRE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++   +L II +EL  +K      RRT I  G   + DED I RED+++TV+H GY+K
Sbjct: 456 ILANEHLVLNIISEELNELKGRFADDRRTEITVGEESILDEDLIPREDVIITVTHTGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+Q+RGG+G  G+  +DEDFV  LFI ++H  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQKRGGRGVVGMDTKDEDFVEHLFITNSHHHLLFFTDKGKVYRIKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN++ + QGE I  ++P  E      + Y+ FAT+HG +++  L D+  I 
Sbjct: 576 SRTARGTPIINLIQIEQGESINAVIPIEEFV---EDSYLFFATQHGIIKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+    + ++++ T  G  +RFP S +R   GR++ GV+GISL
Sbjct: 633 KGGLIAINLREDDALIEVKLTDGQQEMIIGTAQGMSIRFPESDVRSM-GRSATGVKGISL 691

Query: 730 AKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + D VI M IV    D        Y K   A    I     +     N +   G +   
Sbjct: 692 DESDAVIGMDIVNTDLDILIVTAKGYGKRTPAVDYRIQSRGGKGIKTINVTDKNGPVVGL 751

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           +       E+ ++ ++  G   RTS  +     R+ +G+R  ++   + +  +   
Sbjct: 752 KVV---KAEEDLMIITASGTLIRTSMGEISTMGRNTQGVRLINIRDDDSVATVCRA 804


>gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08]
          Length = 891

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/922 (37%), Positives = 503/922 (54%), Gaps = 98/922 (10%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     ++ +             I  V I DE+QN+YL YA++VI+GRA+PD+RDGLK
Sbjct: 1   MADDEKPDEQNQADRQELVTGRHVGIQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M   G   ++ + KC+R+ G+VMGKYHPHG++AIYD L R+AQ W++R  L
Sbjct: 61  PVHRRVIYAMYDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFGS   D  AA RYTEC++   A  ++ D+ +DTVDF+PNYD    EPVVL +R
Sbjct: 121 VQGQGNFGSQGNDGAAAMRYTECKMAPLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIPTHNL EV       + +PD   +      ME I+GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPTHNLREVNRAVQWSLAHPDASSEELLEACMERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
            GA+I+GR GI++AY TGRGS+ +R V  +E+    R+ +VVTE+PY  N   +  KIAE
Sbjct: 241 GGALIVGRQGIEDAYRTGRGSVTMRAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAE 300

Query: 287 LVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV   RI  IAD+RD+S  R G R+VI LKR A   V++N LY++T+LQ  F  NM+AL 
Sbjct: 301 LVNSGRINGIADIRDDSSARTGQRLVIVLKRDAQPRVVMNNLYKHTALQDTFGCNMLALV 360

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L   +  ++  + EV+ RRT+Y L +A   AH+   L  A+  LDEV+ +IR
Sbjct: 361 DNVPRTLRLDQFISYWIDHQMEVIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            SPN E A   L +                           + + E+Q RAIL+++L RL
Sbjct: 421 RSPNTEAASTGLQE--------------------------LLDIDEIQARAILDMQLRRL 454

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R  I + L  L   I +   IL+S  R   II  EL  + D+    RRTRI+    
Sbjct: 455 AALERQKIIDRLEELERLIADYKAILASDDRQREIISTELAEIVDKYGDERRTRIIAADG 514

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D  +ED I  +D+VVT++  GY KR    +YR Q+RGGKG  G  +R +D V  LF  + 
Sbjct: 515 DFSEEDFIPDDDVVVTITRGGYAKRTRTDLYRVQKRGGKGVRGASLRADDEVAQLFTTTN 574

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF+++G VY+ KVW+LP     A+G  +  +LS    E+I  +M     E   + 
Sbjct: 575 HQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVAGLLSFLPDEKIAQVMTLRSYE---DA 631

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQ 704
            Y++ AT+ G V++  L  +    ++G IA+   + D E++  E C+  +D+LL ++ GQ
Sbjct: 632 EYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRTEDEELIGAEQCSAGDDVLLISRKGQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            +RF      +R   GR + GV G+     D+++SM+I+                     
Sbjct: 692 AIRFSAGDDQLRSM-GRATSGVTGMKFRGDDELLSMSII--------------------- 729

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                        ++   ++F+ T +  G+ KRT+  ++R   R
Sbjct: 730 ---------------------------HSDMPEDDRFVFTATGGGYAKRTAVSEYRQQGR 762

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+A  +S+  E G+LV    V++ D+II +   G + R  V+E+    R+T GV  
Sbjct: 763 GGLGIKAMALSE--ERGSLVGGLVVSEADEIIAIKTSGQITRSAVSEVPAKGRSTMGVKF 820

Query: 883 FSTAKDERVVSVERIRESEIVD 904
            S    + V  +    E  + +
Sbjct: 821 VSVRGKDAVSIIALNPEHAVEE 842



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 94/269 (34%), Gaps = 8/269 (2%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  L  Y + R+ G         +++ +      S    VL  
Sbjct: 628 YEDAEYLLLATRKGMVKKTALKAYDSSRQAGVIAINFRT-EDEELIGAEQCSAGDDVLLI 686

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +             R  + +  +     + + ++     D    ++ +V  AT
Sbjct: 687 SRKGQAIRFSAGD-DQLRSMGRATSGVTGMKFRGDDELLSMSIIHSD-MPEDDRFVFTAT 744

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
             G  +R  +S++ Q  R G    AM L      ++     ++ ++I+     GQ  R  
Sbjct: 745 GGGYAKRTAVSEYRQQGRGGLGIKAMALSEERGSLVGGLVVSEADEIIAIKTSGQITRSA 804

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +S +    GR+++GV+ +S+   D V S+  +    A  ++    +          +   
Sbjct: 805 VSEV-PAKGRSTMGVKFVSVRGKDAV-SIIALNPEHAVEEKVTEELVETGEGDATQAESR 862

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798
           + +             + E   + +   +
Sbjct: 863 DVLLQSDTVDDDRAADTAENDMKPEDNGE 891


>gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
 gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4]
          Length = 828

 Score =  804 bits (2076), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/896 (40%), Positives = 546/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++IS    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIS----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+Y AL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKIAYKKSARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EK   ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKMK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDVEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   ++   +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ GVRGI L + D V+   ++                                     
Sbjct: 686 RNARGVRGIKLNENDFVVGAVVINDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVTSVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 86/508 (16%), Positives = 168/508 (33%), Gaps = 64/508 (12%)

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
            II     P    +  +    +    +  I+ I +       +G   + E++  A+ E+ 
Sbjct: 259 EIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVIELKRDAMSEIV 318

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L  L  L   +    +  L I  KE           L +  ++ + ++  +    + +  
Sbjct: 319 LNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIRRTIFELEKAKAR 378

Query: 522 EGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRGGKGRSGVVMRDEDFVT 578
             +L+         +++V  +  S      +  L   +       K    + ++    + 
Sbjct: 379 AHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKAILEMRLQRLTGLE 438

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
              I   + ++L   +      +   RL         +      S  + E          
Sbjct: 439 RDKIKEEYQNLLELINDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDV 498

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDI 696
           ++   N   VV  +  G V+R  L  + + NR   GK++      D I +       + +
Sbjct: 499 EDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDIL 558

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERIC 753
           L  T  GQ     +  I   A R ++G   V  ISLA  +++  MA +   D        
Sbjct: 559 LFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD-------- 607

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                      E+ +   ++ G  KRT+
Sbjct: 608 ----------------------------------------FSDERSLAFFTKNGVVKRTN 627

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRI 872
             +F  SNRS  GIRA  + +      LV+   V+ D   +++ S  G  I+ P+ ++R 
Sbjct: 628 LSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVRE 683

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRES 900
             R  +GV      +++ VV    I + 
Sbjct: 684 IGRNARGVRGIKLNENDFVVGAVVINDD 711


>gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 788

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/861 (40%), Positives = 522/861 (60%), Gaps = 85/861 (9%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPD
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPTGA+++G++GI  AY TG+GSI +R  + IE T   RE+IVVTE PY VNK  + E I
Sbjct: 181 FPTGALVMGKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHI 240

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
             LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+
Sbjct: 241 VRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAI 300

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P+  +L  IL A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RII
Sbjct: 301 QNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRII 360

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R S     A+ ELM +                            LSE Q++AIL++RL R
Sbjct: 361 RASETDAEAQAELMSK--------------------------FKLSERQSQAILDMRLRR 394

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-G 523
           LTGL RD I++E + L   I +  DIL+   R+  IIK EL  VK +    RRT ++   
Sbjct: 395 LTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQ 454

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   
Sbjct: 455 VLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST 514

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           STH  +LFF++ G VY+ K + +P     A+G  ++N+L L++ E I T++    D S  
Sbjct: 515 STHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS-- 572

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G
Sbjct: 573 DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFG 632

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             VRF  SA+R  + R + GV+G++L +GD V+  +                        
Sbjct: 633 YAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGAS------------------------ 667

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                        L   +  +L ++EKG+GKRT + ++    R 
Sbjct: 668 -----------------------------LITDQDEVLIITEKGYGKRTVATEYPTKGRG 698

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKG++   +++ N  G L  +  V  ++ +++++D G +IR  +  I    RAT GV + 
Sbjct: 699 GKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVM 756

Query: 884 STAKDERVVSVERIRESEIVD 904
              +D ++V+   +  +E  +
Sbjct: 757 RLDQDAQIVTFTTVAVAEKEE 777



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 98/241 (40%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 348 IALDHIDEVIRIIRASETD---AEAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 398

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +     +  +     + +  +    + G +   
Sbjct: 399 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSL 458

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S +G+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 459 EDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 515

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    +DE + +V    ES+  D+
Sbjct: 516 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTV-INVESDRSDD 574

Query: 906 A 906
           A
Sbjct: 575 A 575


>gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 928

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             DG  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LTQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L++GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +    G IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +      ++    +            +  E +
Sbjct: 893 EEAVDGGIADVADAQADDAGEDLQLDAAPDEDEPQ 927


>gi|283779138|ref|YP_003369893.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
 gi|283437591|gb|ADB16033.1| DNA gyrase, A subunit [Pirellula staleyi DSM 6068]
          Length = 938

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/930 (39%), Positives = 543/930 (58%), Gaps = 33/930 (3%)

Query: 1   MTEHIISSDEEEEKGITS---------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M+             +             I DE++ SYLTYA++VI+ RA+PD+RDGLKP
Sbjct: 1   MSSDFDPPSGPSASELPPGDDGTRFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKP 60

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
             RRIL  M  + +      VKCA+ISG+  G YHPHG + IY  L RMAQ+W++R +LI
Sbjct: 61  SQRRILVAMNDLNLTPGAPRVKCAKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILI 120

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           + QGNFGS+ G PPAA RYTE RL   A  +L+DL  DTVDF P YD   QEP VL  R+
Sbjct: 121 DKQGNFGSIAGLPPAAMRYTEARLSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRF 180

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           PN+LVNG  GIAVGMAT+IP HNLGEV +  V VID+P++ L  L EII+GPDFPTG  I
Sbjct: 181 PNLLVNGAQGIAVGMATSIPPHNLGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGGTI 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            GR GI+  Y  GR +IV+R  + IE+   DR +I++TEIPYQ  +  ++EKIAELV E+
Sbjct: 241 CGRAGIRRGYRDGRSTIVLRAKTRIEEHKKDRYRIIITEIPYQQARDRVVEKIAELVNEE 300

Query: 292 RIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           RI  I+ + D SD ++   +VI++KR A   V+LNQLY+++ LQ   S+ ++AL   KP 
Sbjct: 301 RIKGISGITDLSDLKEPVHLVIDIKRDADPYVVLNQLYQFSPLQDSISIILLALVDGKPR 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L  +L+ F+  R  V+ RRT++LL+KAR R H + GL +A+AN+DE++RIIR S   
Sbjct: 361 ELSLKELLEEFLRHRVTVIRRRTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQ 420

Query: 411 ETARRELMQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             A+  LM     A+ ++  +  +         G+  T  L+ VQ+ AIL + L +L  L
Sbjct: 421 AEAKVGLMGVECPAAMMQRALGEEGFAMFQSERGASDTYRLTAVQSEAILRMTLGQLVNL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDM 527
            ++ +  E   L  EI E L IL+  + +  +IK+EL+++  +    RRT I  E + D+
Sbjct: 481 EQERLGGEHAELLKEIAEYLRILADENIIRAMIKEELIAIAAKYGDERRTEISGEEIGDV 540

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E MVV++SH GY+KR P S YRAQRRGGKG  G    DED +  LF+ STH 
Sbjct: 541 NLEDLITEETMVVSISHRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHA 600

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++LG VY +KV+ LP  S ++RG+A++N+L+L++GE+I   +   + +      +
Sbjct: 601 YLLFFTNLGRVYWQKVYDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFD--QQGHF 658

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ AT+ G V+++ L D+ +  + G IA+KL   DE++ V      ++++L+T  G  +R
Sbjct: 659 LMMATRKGLVKKSPLEDYSRPKKGGIIAIKLREDDEVVDVVVTKPGDEVVLSTSTGMAIR 718

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-------DADYDERICYMKHMSA 760
           F  S  R   GRN+ GV+GISLA GD ++ M +           +  Y +R  +  +   
Sbjct: 719 FSESDARPM-GRNTSGVKGISLASGDSLVGMVVADPDATLLTVCENGYGKRTNFGPNAEV 777

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                + D    T   + SS E             +        E+     +S   +R  
Sbjct: 778 VGPPPADDDSIDTGSIDTSSAEAETVVAEPPAPAEEAAAEDEGDEE----GSSGSRYRTQ 833

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R GKG+R    +  N  G ++AV  V+D +++++++ +G L R+   EI+   R T+GV
Sbjct: 834 RRGGKGLRDIKTTTRN--GTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGV 891

Query: 881 VIFSTAKDERVVSVERIRESEIVDEAESTE 910
            I S   D+++V+V R+      DEAE T+
Sbjct: 892 RIMSLDDDDKLVAVVRVPR----DEAEVTD 917



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 7/220 (3%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D VV  +  G   R   S  R   R   G  G+ +   D +  + +     ++L     G
Sbjct: 705 DEVVLSTSTGMAIRFSESDARPMGRNTSGVKGISLASGDSLVGMVVADPDATLLTVCENG 764

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
           +  +      P         A  + +     +  +        E            +  +
Sbjct: 765 YGKRTNFG--PNAEVVGPPPADDDSIDTGSIDTSSAEAETVVAEPPAPAEEAAAEDEG-D 821

Query: 657 VRRNKLSDFIQINR--SGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
              +  S +    R   G   +K       +++V       ++L+ T  G+  R     I
Sbjct: 822 EEGSSGSRYRTQRRGGKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREI 881

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           +   GRN+ GVR +SL   D+++++  V   +A+  +   
Sbjct: 882 KTI-GRNTQGVRIMSLDDDDKLVAVVRVPRDEAEVTDLAA 920


>gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818]
 gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
 gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818]
          Length = 824

 Score =  804 bits (2075), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/883 (39%), Positives = 531/883 (60%), Gaps = 89/883 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E     V I D ++ SYL Y+++VI+GRA+PD +DGLKPVHRRIL+ M ++ +   + Y 
Sbjct: 6   EDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPRRPYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD  AA RYTE
Sbjct: 66  KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+  A+  +L D+ KDTV+F PNYD +  EP VL +R PN+LVNG  GIAVGMAT+IP 
Sbjct: 126 ARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMATSIPP 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H + E++D  + VIDN   ++D ++E+++GPDFPTG +I G+ GI  AY TGRG I +R 
Sbjct: 186 HRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIYGKMGILEAYRTGRGRIRVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
             HIEKT   ++ IV+ E+PYQVNKA ++E+I+EL +EK I  IA++RDESDR+G RVVI
Sbjct: 246 KVHIEKTKT-KDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREGIRVVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A ++++LN L++ T+++S F + ++A+N  +P+ F L+ +L+ F+A R+ +++RR
Sbjct: 305 ELKRDAMSEIVLNHLFKSTTMESTFGIILLAINNKEPKIFNLLELLQIFIAHRKTIIIRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L KA+ RAH+L GL IA+ N+DE++RIIR S + E A+  L+++            
Sbjct: 365 SIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q +AILE+RL RLTGL RD I  E   L  +I     IL 
Sbjct: 413 --------------FSLSELQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESILK 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +L  I+K ELL +K++  + R+T+I E    ++ ED I  E +VVT+SH GYVKRV 
Sbjct: 459 SEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDIEDLIPNEKVVVTMSHRGYVKRVL 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y  Q RGGKG+      ++DF+   F+ +TH +++F ++ G +Y  KV+++P     
Sbjct: 519 LKTYEKQNRGGKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A GKA++N+++L+  E+I   +   +     ++  +VF TK+G V+R  L ++  I   G
Sbjct: 579 AIGKAVVNLINLSPDEKIMATITTTDFN---DDKSLVFFTKNGIVKRTNLKEYSNIRSVG 635

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+ LD  DE+++         ++ + T+ G C+RF I  +R   GR   GV GI    
Sbjct: 636 VRAINLDENDELVTAHIVGSSVKELFIATQQGMCIRFGIDELREI-GRVGRGVTGIKFKA 694

Query: 732 -GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D VI+   +                                                 
Sbjct: 695 SEDCVIAATTITSDTDK------------------------------------------- 711

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +LTVSE+G GK+T + ++R+ +R+GKG+    ++   + G LV+V  +ND 
Sbjct: 712 ---------LLTVSEQGIGKQTLAGEYRLQSRAGKGVIVMKLTP--KTGKLVSVVNINDE 760

Query: 851 D-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +  +++++  G +IRV    IR A R T GV I +   +++V 
Sbjct: 761 NMDLMVLTSSGKMIRVDTEAIREAGRNTSGVKIVNVG-NDKVA 802



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 50/239 (20%), Positives = 107/239 (44%), Gaps = 19/239 (7%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--K 731
           + + LD+ DEI+ +   +++ +     K     +F +S ++    +  + +R   L   +
Sbjct: 382 LIIALDNIDEIIRIIRASKDTE---EAKNALVEKFSLSELQA---KAILEMRLQRLTGLE 435

Query: 732 GDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            D++ +  A +    A  +  +   + + +  +    + +E  S K  + +E +      
Sbjct: 436 RDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEKFSSKRKTQIEEDYDSIDI 495

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-ND 849
           ++L   E+ ++T+S +G+ KR     +   NR GKG     VS        +  F V N 
Sbjct: 496 EDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGGKG----KVSGNTHEDDFIESFFVANT 551

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           +D I+ V++KG L  + V +I  A R   G   V + + + DE++  +  I  ++  D+
Sbjct: 552 HDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLINLSPDEKI--MATITTTDFNDD 608


>gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 807

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/843 (43%), Positives = 526/843 (62%), Gaps = 41/843 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +          +  + I +EM+NS+L YA++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 1   MSDTM-------RGKVVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+   K Y K AR+ GEV+GKYHPHG+ A+YDA+ RMAQD+S R  L++G GNFGSV
Sbjct: 54  HDLGITPEKPYKKSARVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSV 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +  LL D+ K+T+D++ N+D + +EPVVL +R+PN+LVNG  
Sbjct: 114 DGDSAAAMRYTEVRMAKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSA 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DG VA+I+NP+I  + LM  I+GPDFPTG +ILGR GIK+A
Sbjct: 174 GIAVGMATNIPPHNLDEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIILGRNGIKDA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y+TGRG + IR  + IE   G++ +I+VTEIPYQVNKA ++E IA LVREK+I  I+DLR
Sbjct: 234 YSTGRGKLKIRAKTEIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLR 293

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVIELKR  + +V+LNQLY+YT+L+  F + ++AL   +P+  +L  IL  
Sbjct: 294 DESDRDGLRVVIELKRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGEPKVLSLREILDH 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ F++EV++RRTKYLL KA  RAH+L GL IA+ NLD V+++IR S   + A+  LM  
Sbjct: 354 YLEFQKEVIIRRTKYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLM-- 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q +AIL++RL +LT L RD I  E + L
Sbjct: 412 ------------------------NNFSLSDKQAQAILDMRLQKLTALERDKIEEEYSEL 447

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     +L     +L IIK+E+  +K++    RRT I     ++++ED I  E++++
Sbjct: 448 LKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVII 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GYVKRVPLS YR Q+RGG+G SG+  +++DFV  LF  STH  +LFF++ G VY+
Sbjct: 508 TLTHQGYVKRVPLSTYRNQKRGGRGISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYR 567

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P  S QARG A++N+L+++  E IT ++P  E      + Y+ F TK G  ++ 
Sbjct: 568 LKVYEIPEASRQARGTAIVNLLAIDPDEHITAVIPIQEFT---EDDYLFFVTKQGVAKKV 624

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            LS+     + G IA+ L+  DE++ V     + +I+L T+ G  ++F    +R   GRN
Sbjct: 625 ILSELKAYRKDGLIAINLNEDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSM-GRN 683

Query: 721 SVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           S GV+GISL   D+VI M I   ++D        Y K              +       S
Sbjct: 684 SRGVKGISLKDNDRVIGMDIAQENSDLLIVSENGYGKRTPVSEYRTQSRGGKGIYTFKPS 743

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              GN++      +  +++ I+ V+ +G   R         +R  +G+R   +   +++ 
Sbjct: 744 EKSGNLA---GCIVVNEDEEIILVTAQGVINRQQVEGISQMSRRTQGVRLIKLKDDDQVV 800

Query: 840 ALV 842
           +L 
Sbjct: 801 SLA 803



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +        I  K D  DE    +    E  I+  T  G   R P+S  R    R   
Sbjct: 477 EKYSDSR-RTLITNKTDELDEE---DLIPDEEVIITLTHQGYVKRVPLSTYRNQK-RGGR 531

Query: 723 GVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           G+ G++    D V  +      +      ++   Y   +                     
Sbjct: 532 GISGMTTKNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAI 591

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD---FRISNRSGKGIRATDVSKIN 836
             + +I+     +   ++ ++  V+++G  K+    +   +R       G+ A ++   N
Sbjct: 592 DPDEHITAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRK-----DGLIAINL---N 643

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           E   L+ V   +   +IIL +++G  I+    E+R   R ++GV   S   ++RV+ ++ 
Sbjct: 644 EDDELIDVHLTDGKQEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKDNDRVIGMDI 703

Query: 897 IRESEI 902
            +E+  
Sbjct: 704 AQENSD 709



 Score = 95.6 bits (236), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 87/213 (40%), Gaps = 18/213 (8%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICY 754
           K G    F +S       + +  +  + L      + D++    + +L     Y+  +  
Sbjct: 407 KEGLMNNFSLSD------KQAQAILDMRLQKLTALERDKIEEEYSELLKKIDYYNRVLGD 460

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            + +    +    + +E  S    + +     E   ++L   E+ I+T++ +G+ KR   
Sbjct: 461 EQLVLNIIKEEIQEIKEKYSDSRRTLITNKTDELDEEDLIPDEEVIITLTHQGYVKRVPL 520

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R G+GI        + +  L A    + ++ I+  ++KG + R+ V EI  AS
Sbjct: 521 STYRNQKRGGRGISGMTTKNDDFVEHLFAT---STHNYILFFTNKGKVYRLKVYEIPEAS 577

Query: 875 RATKGVVIFST---AKDERVVSVERIRESEIVD 904
           R  +G  I +      DE + +V  I+E    D
Sbjct: 578 RQARGTAIVNLLAIDPDEHITAVIPIQEFTEDD 610


>gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 928

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/889 (42%), Positives = 533/889 (59%), Gaps = 52/889 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L++GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +    G IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           ++G   RT   +     R+ +G+    ++   +   LV +  V +  ++
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQEPSEV 885



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +      +     +       +    +  E +
Sbjct: 893 DEVVDGVIVDVDVTDADEAGEDLQTDAAPDEDEPQ 927


>gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25]
 gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 856

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/899 (38%), Positives = 526/899 (58%), Gaps = 88/899 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ I S ++ DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +  N K+
Sbjct: 5   KDEVIVSRNVEDEMKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKH 64

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCA+ISG+  G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGDPPAA RYT
Sbjct: 65  RKCAKISGDTSGDYHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL  AA  L+DDL KDTV+  PNYD + +EP V  +++PN+L NG  GIAVGMATNIP
Sbjct: 125 EARLTTAAVQLMDDLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++   + +++NP   +D +M+++ GPDFPTG +I G  GIK A+ TGRG +++R
Sbjct: 185 PHNLNELIKATLLLLENPTTSIDDIMKVMPGPDFPTGGMICGYRGIKEAFHTGRGKLILR 244

Query: 252 GVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           GV  +E+     DR ++ + EIPY VNK+ ++E IAEL+  K I  I+DLRDESD+ G R
Sbjct: 245 GVIRVEENEDNPDRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMR 304

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRG   +VI+NQLY+++ LQ  F  NM+AL+   P    +  ++  ++  R +VV
Sbjct: 305 IVIELKRGEVPEVIINQLYKFSDLQITFGCNMLALDKGLPRTMNVKQLISVWIEHRIDVV 364

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ LNKA  RAH+L G   A+ +LDEVVR+IR S N + AR EL+++         
Sbjct: 365 RRRTRFELNKAEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQ--------- 415

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q  AIL+LRL +LTGL RD I +E   L  +I     
Sbjct: 416 -----------------FEFTERQANAILDLRLYQLTGLERDKINDEYQELLKKIDYLRA 458

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+S + +  II++ELL ++    + R+T+I+    ++  ED I  E +++T+S   Y+K
Sbjct: 459 VLASEAMVKEIIREELLDIQKHHKSERQTQIIAAETEVNMEDLIANEPVIITISQDDYIK 518

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRD-EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           R+P++ +R QRRGG+G +G+ ++  ED +  L++ +TH  +L F++LG  Y  KVW++P 
Sbjct: 519 RMPVNTFREQRRGGQGVTGMQLKREEDVIKGLYVATTHDYLLIFTNLGRCYWLKVWQIPE 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +++GK LIN+L   + E    I       S      ++ ATK   V+++ L++F   
Sbjct: 579 TGRKSKGKPLINLLEDIRPEE--KIATIQRVSSFEEEACILMATKRAVVKKSLLNEFSNP 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R G  A+ +D  DE+++      E  ++L T  G  VRF  S +R   GR + GV+G +
Sbjct: 637 RRKGIWALDIDEGDELVAARLVKPEQQVMLFTHQGMAVRFEESNVRPM-GRTARGVKGAT 695

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  + D ++   +V   ++                                         
Sbjct: 696 LRGENDYIVGCEVVNGDES----------------------------------------- 714

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL V E GFGKR+   DFR +NR G G+R+   S+ N  G ++    V
Sbjct: 715 ------------ILVVCENGFGKRSQVDDFRQTNRGGVGVRSIITSERN--GKVIGALCV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            D D ++++S  G  +R+ +N++R+  R T+GV + +  +++ +V++++++ SE   E 
Sbjct: 761 TDEDGMVMMSATGQTVRINMNDLRVMGRNTQGVKLANLKENDYLVAIQKLQGSENQSEE 819


>gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 928

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/889 (42%), Positives = 533/889 (59%), Gaps = 52/889 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L++GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +    G IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           ++G   RT   +     R+ +G+    ++   +   LV +  V +  ++
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQEPSEV 885



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +      +     +       +       E +
Sbjct: 893 DEVVDGVIVDVDVTNADEAGEDLQADAAPEEDEPQ 927


>gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70]
 gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s]
 gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923]
 gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150]
 gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023]
          Length = 836

 Score =  803 bits (2074), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/905 (38%), Positives = 528/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL ++A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRTRI     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817

Query: 905 EAEST 909
           E E  
Sbjct: 818 ETEEN 822



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/409 (15%), Positives = 147/409 (35%), Gaps = 26/409 (6%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + +   ++  ++      +      + +++R      +         +   +A D++D+ 
Sbjct: 439 KVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIE 498

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRL--ARLTGLGRDDIRNELNSLGIEIKECLD 489
           D+I D S  I   G  Y+  +  +   E +     +TG       + L ++     +   
Sbjct: 499 DIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYL 558

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVT 541
           ++ +       +K   L   +      +  I         E            + + +  
Sbjct: 559 LIFTNFGQCYWLKVWQLPEGER-RAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFL 617

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+V L  + + R+ G     +    ++ +    I +    V+ F+ LG   + 
Sbjct: 618 ATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLFTRLGMAVRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              ++      ARG   +++ +                +    +  V+    +G  +R+ 
Sbjct: 677 PHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVCDNGFGKRSL 728

Query: 662 LSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           + DF + NR       I +   + D +L   + T  + ILL +  GQ +R  +  +RV  
Sbjct: 729 VCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRINMQDVRVM- 786

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           GR + GVR ++L +GD +++M  +       +        + + +  I 
Sbjct: 787 GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835


>gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
 gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046]
          Length = 993

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/952 (37%), Positives = 529/952 (55%), Gaps = 88/952 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE++NSYL YA++VI+ RA+PD+RDGLKPVHRR+L+ M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H +L DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+ C+A  +NP+I ++ LME I GPDFPTG +I G+ GI +AY TG+G + IRG 
Sbjct: 184 NMTEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIYGKAGIVDAYRTGKGRLHIRGK 243

Query: 254 SHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            H E+     R  IV TEIPYQVNKA  +E+IAELV+EK++  I++LRDESD+ G R+ I
Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LKRG +A+V++N L++ T L++ FS+NMV L+  +P+   L  I+ AF+  R+EVV RR
Sbjct: 304 DLKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+R H+L GL +A+AN+D ++  I+ S NP  AR  L    W A ++  L++
Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423

Query: 433 LID------------DSSYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                          D S   G DG    LS  Q  AILELRL RLTGL +D ++ E   
Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I E   IL+  + L+ +IK+EL  +  +    RRT IVE  +D   ED I  E +V
Sbjct: 484 ILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESRIDFSREDLIPEEQVV 543

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TVS  GY K  PLS Y AQRRGG+G+S   M+++D++  L + S H +VL F+++G VY
Sbjct: 544 LTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVGKVY 603

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + +V+ +P  S  ++G+ ++N+L L+  E IT I+P  +    +         +    + 
Sbjct: 604 RLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPKKFKE-------RLAEFKN 656

Query: 660 NKLSDFIQINRSGKIAMKLD-----------SRDEILSVE-------------------- 688
              S+   +  +  I    D             DE+                        
Sbjct: 657 FVRSNVATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNET 716

Query: 689 ---------TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
                       +   + + T  G   R     +  F+   S G+R I L + D +I +A
Sbjct: 717 VVEFADLAEKMRKNFFVFMATASGTVKRV---ELEQFSNVRSNGLRAIELKEEDTLIGVA 773

Query: 740 IVLHAD----------------------ADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           I                               + +  M+   A  +       +  S   
Sbjct: 774 ITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDE 833

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +SS     S      +  +   +L  S  G+GKRT   DF    R GKG+ A   S+ N 
Sbjct: 834 ESSDLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERN- 892

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            G LV    ++++ +++L+SD GTL+R   +E+    R  +GV +     +E
Sbjct: 893 -GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEE 943



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 64/130 (49%), Gaps = 6/130 (4%)

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                +++  +  +   ++L  +EQ +LTVS+ G+ K     D+    R G+G  AT + 
Sbjct: 517 GDARRTAIVESRIDFSREDLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMK 576

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDER 890
           + + I  L+     +++  ++  ++ G + R+ V E+  ASR +KG   V +     DE 
Sbjct: 577 EDDYIQHLI---VTSNHATVLCFTNVGKVYRLRVFEVPQASRGSKGRPMVNLLPLDADET 633

Query: 891 VVSVERIRES 900
           + ++  + ++
Sbjct: 634 ITAILPVIDA 643



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 22/265 (8%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VKRV L  +   R  G     + +++ED +  + I      ++ FS+ G 
Sbjct: 732 FVFMATASGTVKRVELEQFSNVRSNG--LRAIELKEEDTLIGVAITDGEQQIMLFSNEGK 789

Query: 598 VYKEKVWRLPIGSPQARGKALI----------------NILSLNQGERITTIMPFPEDES 641
             +       +    A+G   +                      +   +           
Sbjct: 790 AIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASRIVSLVV 849

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILL 698
                 V+ A+ +G  +R  + DF    R   G IA+K      E++      +  +++L
Sbjct: 850 VPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDESKELML 909

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            +  G  VR   S +    GRN+ GVR I L   + ++ +  V   + + D     ++  
Sbjct: 910 ISDGGTLVRTRASEV-ARTGRNAQGVRLIRLGNEEILVGVVAVEAVEVEDDILDASIETT 968

Query: 759 SAQRRLISGDTEEITSLKNDSSVEG 783
                          +   ++S E 
Sbjct: 969 EETVVDEVNVDASENTTDTNTSNED 993


>gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
 gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261]
          Length = 817

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/898 (38%), Positives = 500/898 (55%), Gaps = 89/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +  + + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM++G+  N 
Sbjct: 7   EPLFGKVVPLPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNT 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ GE MGKYHPHG++AIYD + RMAQD+S+R  L++GQGNFGS+DGDP AA R
Sbjct: 67  AYKKSARVVGETMGKYHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL +    +L D+ +DTVD+ PN+D S QEP+ L A  PN+L+NG  GIAVGMATN
Sbjct: 127 YTEARLYEIGELMLADIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDN--PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           IP HNL EVVD    +ID     +D+  ++  + GPDFPTG +ILGR GI +AY TGRG 
Sbjct: 187 IPPHNLVEVVDALCYLIDTEPEQVDIGEILFRMPGPDFPTGGLILGRDGIIDAYRTGRGK 246

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +RG +HIE+    +  IV+TEIPY VNK  ++E IA+ V++K I  + DLRDESDR+G
Sbjct: 247 ITMRGRTHIEEGKRGKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREG 306

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+ R    +++L QLYR T LQS F V  +AL    P+  ++  +L  F+  R  
Sbjct: 307 LRIVIEVNRDTDPNLVLRQLYRRTQLQSTFGVINLALIDGYPKELSIEEMLNIFLNHRRS 366

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT++ L KA  RAH++ GL  A+  +DEV+ +IR S   E A+  L+ +       
Sbjct: 367 VVRRRTQFRLEKAEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISK------- 419

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              +  SE Q +AILE+RL RLTGL R+ +  EL  L  +I+  
Sbjct: 420 -------------------LDFSEAQAQAILEMRLQRLTGLEREKLEAELAQLLSDIERY 460

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL +   L  +IK+ELL VK      R+T I++ + D+  ED I   D+VV +S  GY
Sbjct: 461 QTILGNPKVLDSVIKEELLEVKRRFGNERKTEIIDAVEDVSIEDLIPESDIVVVLSRDGY 520

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           ++R  L  Y  Q RGGKGR G  +++ED V  + + STH  +  F+S G V   K + +P
Sbjct: 521 LRRKDLQEYTLQGRGGKGRKGTALQEEDEVALVAVTSTHRDIYLFTSKGRVLALKGYVIP 580

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                 RGK +   ++L +GER+ T+       +     Y  F T  G  +R  LS+   
Sbjct: 581 ES-KTGRGKLINRFVALEEGERVVTM----HGRAVDGAKYAFFITLRGTAKRLDLSELEN 635

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + R+G+  M LD  DEI  +   + ++ +L+ T  GQ +R   S  R   GR + GVRGI
Sbjct: 636 LTRAGRRVMGLDEGDEISQIVLTSGDDHLLIVTAQGQALRTHESEFRPM-GRTARGVRGI 694

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L K D VI   +V +                                            
Sbjct: 695 RLRKNDYVIGCDVVANG------------------------------------------- 711

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     ++ L +SE GFGKRT   +F + +R G G+   ++S     G +V  + V
Sbjct: 712 ----------RWPLLLSENGFGKRTKYDEFSLRHRGGSGVIVMNLSDR--TGLIVGCWSV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            + D+I+ ++ +G +IR+ V+E  +  R   G ++    + + V +   +   +  D+
Sbjct: 760 AEGDEIVAITSRGRMIRLAVSESPVLGRTAMGSIMMRLDEGDTVATASVVSTEDGEDD 817


>gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 879

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/908 (38%), Positives = 505/908 (55%), Gaps = 94/908 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I  V +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++ M   G   ++
Sbjct: 24  DDPHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDR 83

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ G+VMG++HPHG++AIYD L R+ Q W +R  L  GQGNFGS   D  AA R
Sbjct: 84  AFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPR 143

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+LVNG  GIAVGMATN
Sbjct: 144 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATN 203

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV  G    + NP+   +     LME I+GPDFPTGA ILG  GI++AY TGR
Sbjct: 204 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGR 263

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSI +R V ++E+    R  +VVTE+PYQ N   +  KIA+L++E ++  I+DLRDE S 
Sbjct: 264 GSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSG 322

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VI LKR A   V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  
Sbjct: 323 RTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNH 382

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM      
Sbjct: 383 QMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM------ 436

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + E Q +AIL ++L RL  L R  I++  + L   I
Sbjct: 437 --------------------DFLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLI 476

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            E   I++S  R   II +EL  + +     RRT I+     DM  ED I  E++VVT++
Sbjct: 477 SEYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTIT 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K 
Sbjct: 537 RGGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKG 596

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + L      A+G+ L N+L     E I  +M     E   +  Y+V ATK G V++++LS
Sbjct: 597 YELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYE---DAEYLVLATKGGLVKKSRLS 653

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNS 721
           D+     +G IA+ L   DE++S    + E+DILL ++ G  +RF  +   +R   GR++
Sbjct: 654 DYDTNRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRST 712

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV G+    GD++IS  +V+                                       
Sbjct: 713 SGVTGMKFRDGDELISAQVVIP-------------------------------------- 734

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E F+  V+E G+ KRT    +R+  R+G GI+   + +    GAL
Sbjct: 735 ---------------ESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEG--RGAL 777

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++ND++++V   G ++R  V+E+    R T GV+     K + ++ + R ++ +
Sbjct: 778 VGGLIVSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQ 837

Query: 902 IVDEAEST 909
           + ++ E  
Sbjct: 838 LDEQKEDD 845



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 13/257 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                 + +V  +  G VK+  LS Y   R  G     + +RD+D V   F+VS    +L
Sbjct: 630 KTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAG--LIAINLRDDDEVVSAFLVSPEDDIL 687

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  + +  +    G+ + +              +V  
Sbjct: 688 LISRNGMSLRFHANNESL-RPMGRSTSGVTGMKFRDGDELISAQVV------IPESFVFV 740

Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  +  +     N  G    KL      ++     ++ +++L+  + G+ VR
Sbjct: 741 VTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVGGLIVSENDEVLVVMQSGKVVR 800

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S +    GR+++GV      KGD +I +A       D  +        + +  + S 
Sbjct: 801 TNVSEV-PAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQKEDDAEVEATEESVINSE 859

Query: 768 DTEEITSLKNDSSVEGN 784
             +   +    +S + +
Sbjct: 860 VVDTQENTPTTASTDVD 876


>gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13]
 gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40]
 gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1]
 gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 928

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 375/889 (42%), Positives = 533/889 (59%), Gaps = 52/889 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LAQIGELIRILNSATRLMEVIREELELIRAEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L++GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +    G IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           ++G   RT   +     R+ +G+    ++   +   LV +  V +  ++
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQEPSEV 885



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 101/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGFGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +      + G   +       +    +  E +
Sbjct: 893 DEVVDGVIVDVDGADADEAGEDLQADAAPDDDEPQ 927


>gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020]
          Length = 928

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 532/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A           +  +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 95/256 (37%), Gaps = 15/256 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL  +  QR  G     + + + D +    I      ++ FS  G
Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V + K   +      ARG   +  + L +G+++ +++             ++ A++ G 
Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S+F +  R G   + + S +     +         +I+L +  G  VR  +  +
Sbjct: 793 GKRTAISEFPEYKRGGLGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I LA  ++++ +  V        E +   + +       +       
Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVIDGVIVDAAEAEVGDA 911

Query: 774 SLKNDSSVEGNISEER 789
                +    +  E +
Sbjct: 912 GEDLQADAAPDEDEPQ 927


>gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 928

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 96/256 (37%), Gaps = 15/256 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL  +  QR  G     + + + D +    I      ++ FS  G
Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V + K   +      ARG   +  + L +G+++ +++             ++ A++ G 
Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S+F +  R G+  + + S +     +         +I+L +  G  VR  +  +
Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I LA  ++++ +  V        E +   + +       +       
Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVIDGVIVDAAEAEVGDA 911

Query: 774 SLKNDSSVEGNISEER 789
                +    +  E +
Sbjct: 912 GEDLQADAAPDEDEPQ 927


>gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642]
          Length = 926

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSESEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 101/255 (39%), Gaps = 15/255 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL  +  QR  G     + + + D +    I      ++ FS  G
Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V + K   +      ARG   +  + L +G+++ +++             ++ A++ G 
Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S+F +  R G+  + + S +     +         +I+L +  G  VR  +  +
Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I LA  ++++ +  V        E +   + +       +   +   
Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEGEEVVDGVIVDAAEVDDAGE 911

Query: 774 SLKNDSSVEGNISEE 788
            L+ D++ + +  + 
Sbjct: 912 DLQADAASDEDEPQN 926


>gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464]
          Length = 826

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/895 (40%), Positives = 550/895 (61%), Gaps = 95/895 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIGDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F   N +G  A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   GR
Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFPLEDVREI-GR 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI L + D V+   ++                                      
Sbjct: 685 TTRGVRGIRLNENDFVVGAVVISDDSNK-------------------------------- 712

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKGI    +++  + G
Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 750

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
            LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 803



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 82/524 (15%), Positives = 166/524 (31%), Gaps = 66/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +   A       +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGK 564
           + ++  +    + +    +L+         +++V  + +           + R      +
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR--LPIGSPQARGKALINIL 622
            ++ + MR +                    +G +         L         +      
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SPRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ  R  +  I   A R ++G   V  ISLA  +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYRLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856
           + +   ++ G  KRT+  +F  +     G+RA  + +      LV+   V+ N   +++ 
Sbjct: 612 RSLAFFTKNGVVKRTNLSEFDSNY---NGMRAIVLDEG---DELVSAKIVDKNAKHLLIA 665

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+ P+ ++R   R T+GV      +++ VV    I + 
Sbjct: 666 SYLGLFIKFPLEDVREIGRTTRGVRGIRLNENDFVVGAVVISDD 709


>gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 875

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/914 (37%), Positives = 508/914 (55%), Gaps = 104/914 (11%)

Query: 1   MTEHIISSDEEEEKGITS----------VSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M++     +   +  I            + +  EMQ SYL YA+ VI+GRA+PD+RDGLK
Sbjct: 1   MSDEQTPENAPMDGEIIEPIHEGGRVDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+ M   G    + Y KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW +R  L
Sbjct: 61  PVHRRVLYAMYDGGYRPERSYNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
             GQGNFGS   D  AA+RYTE ++   A  ++ D+ ++TVDF+ NYDG  QEP VL AR
Sbjct: 121 ALGQGNFGSPGNDGAAAQRYTETKMAPLAMEMVRDINENTVDFQDNYDGKNQEPTVLPAR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFP 226
           +PN+LVNG  GIAVGMATNIP HNL EV +G    + NP+      L  LM  ++GPDFP
Sbjct: 181 FPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWYLQNPEASREELLAELMLRVKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           +GA+ILG  GI +AY TGRGSI +R V ++E+    R  +VVTE+PY  N   +  KIAE
Sbjct: 241 SGAMILGTKGISDAYRTGRGSITMRAVVNVEEIQ-GRTCLVVTELPYMANPDNLAVKIAE 299

Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LVR+ +I  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+A+ 
Sbjct: 300 LVRDGKISGIADMRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLAIV 359

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P    L G ++ +V  + EV+VRRT+Y L KA + AH+L GL  A+  LDEV+ +IR
Sbjct: 360 DGVPRTLPLDGFIRHWVTHQIEVIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIALIR 419

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S   E AR  LM+                           + + E Q RAIL+++L RL
Sbjct: 420 RSATTEAARDGLME--------------------------LLDIDEDQARAILDMQLRRL 453

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GL 524
             L R  I++    L   I E   I++  +R   I+ +EL  +  +    RRT+++    
Sbjct: 454 AALERQKIQDRHAELDRMIAEFKAIIADPARQRQIVSEELQEIVAKHGDDRRTKVLMGYD 513

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            DM  ED I  E+MVVT++  GYVKR  +  YR+Q RGGKG  G  +R +D V   F+ S
Sbjct: 514 GDMSVEDLIPEEEMVVTITRGGYVKRTRIDNYRSQARGGKGIKGANLRGDDVVEHFFVTS 573

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + L      A+G+ + N+++    E I  ++         +
Sbjct: 574 THNWLLFFTNHGRVYRTKCYELAEAGRDAKGQHVANVMAFQPDEHIAQVLDLRTY---QD 630

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y++ AT++G V++ +L D+     +G IA+ L   DE++S +  ++ +D++L ++ GQ
Sbjct: 631 AAYLMLATRNGLVKKTRLEDYDTNRTAGVIAINLREDDELVSAQLVSESDDVMLVSRKGQ 690

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            VRF  +   +R   GR + GV G+   +GD++++  +V                     
Sbjct: 691 SVRFTATDTALRPM-GRATSGVTGMKFREGDELLAADVVRD------------------- 730

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                             + ++ TV+ +G+ KRT+  ++R+ +R
Sbjct: 731 ----------------------------------DSYVFTVTNEGYAKRTTVAEYRVQSR 756

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+   +++  E G LV    V++ D++++V   G ++R  V+++    R T GV+ 
Sbjct: 757 GGLGIKVAKLNE--ERGELVGALIVDETDEVLVVMGSGKVVRSAVSQVPSKGRDTMGVIF 814

Query: 883 FSTAKDERVVSVER 896
               K + +++V +
Sbjct: 815 AKPDKKDHIIAVAK 828


>gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 881

 Score =  803 bits (2073), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/908 (38%), Positives = 507/908 (55%), Gaps = 94/908 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+++GM   G   ++
Sbjct: 26  DNPHGNIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDR 85

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCARI G+VMG++HPHG++AIYDAL R+ Q W++R  L  GQGNFGS   D  AA R
Sbjct: 86  AFNKCARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPR 145

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A  ++ D+ +DTVDF+PNYDG   EP VL AR PN+L+NG  GIAVGMATN
Sbjct: 146 YTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATN 205

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV  G    + NP+   +     LME I+GPDFPTGA ILG  GI++AY TGR
Sbjct: 206 IPPHNLREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTKGIEDAYRTGR 265

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSI +R V ++E+    R  +VVTE+PYQ N   +  KIA+L++E ++  I+DLRDE S 
Sbjct: 266 GSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSG 324

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+VI LKR A   V+LN LY++T LQ  FS NM+A+    P   +L   ++ +V  
Sbjct: 325 RTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLAIVDGVPRTLSLDAFIRHWVNH 384

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+VRRT+Y L +A + AH+L GL  A+  LDEV+ +IR SP  + AR  LM      
Sbjct: 385 QMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALM------ 438

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + E Q +AIL ++L RL  L R  I++  + L   I
Sbjct: 439 --------------------DFLDIDEAQAQAILNMQLRRLAALERQKIQDRHDELQRLI 478

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVS 543
            E   I++S  R   II +EL  + +     RRT I+     DM  ED I  E++VVT++
Sbjct: 479 AEYNAIIASEDRQREIISEELGEIVNRYGDDRRTEILRGFNGDMSMEDLIPEEEVVVTIT 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH+ +LFF++LG VY+ K 
Sbjct: 539 RGGYIKRTRSDQYRSQHRGGKGIRGAQLRGDDVVEHFFVTTTHSWILFFTNLGRVYRTKG 598

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + L      A+G+ L N+L     E I  +M     E   +  Y+V ATK G V++++LS
Sbjct: 599 YELQEAGRDAKGQHLANLLEFQPDEHIAQVMDLKTYE---DAEYLVLATKGGLVKKSRLS 655

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNS 721
           D+     +G IA+ L   DE++S    + E+DILL ++ G  +RF  +   +R   GR++
Sbjct: 656 DYDTNRTAGLIAINLRDDDEVVSAFLVSPEDDILLISRNGMSLRFHANNESLRPM-GRST 714

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV G+    GD++IS  +V+                                       
Sbjct: 715 SGVTGMKFRDGDELISAQVVIP-------------------------------------- 736

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          E F+  V+E G+ KRT    +R+  R+G GI+   + +    GAL
Sbjct: 737 ---------------ESFVFVVTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEG--RGAL 779

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V    V++ND++++V   G ++R  V+E+    R T GV+     K + ++ + R ++ +
Sbjct: 780 VGGLIVSENDEVLVVMQSGKVVRTNVSEVPAKGRDTMGVIFAKPGKGDSIIGIARNQDRQ 839

Query: 902 IVDEAEST 909
           + ++ E  
Sbjct: 840 LDEQKEDD 847



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 95/257 (36%), Gaps = 13/257 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                 + +V  +  G VK+  LS Y   R  G     + +RD+D V   F+VS    +L
Sbjct: 632 KTYEDAEYLVLATKGGLVKKSRLSDYDTNRTAG--LIAINLRDDDEVVSAFLVSPEDDIL 689

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  + +  +    G+ + +              +V  
Sbjct: 690 LISRNGMSLRFHANNESL-RPMGRSTSGVTGMKFRDGDELISAQVV------IPESFVFV 742

Query: 651 ATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVR 707
            T+ G  +R  +  +     N  G    KL      ++     ++ +++L+  + G+ VR
Sbjct: 743 VTEGGYAKRTHVEGYRVQGRNGFGIKVAKLVEGRGALVGGLIVSENDEVLVVMQSGKVVR 802

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S +    GR+++GV      KGD +I +A       D  +        + +  + S 
Sbjct: 803 TNVSEV-PAKGRDTMGVIFAKPGKGDSIIGIARNQDRQLDEQKEDDAEVEATEESVINSE 861

Query: 768 DTEEITSLKNDSSVEGN 784
             +   +    +S + +
Sbjct: 862 VVDTQENTPTTASTDVD 878


>gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
 gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM
           16795]
          Length = 811

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/844 (42%), Positives = 527/844 (62%), Gaps = 34/844 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           + EE   I    I+ EM++SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +
Sbjct: 2   NMEENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+V+GKYHPHG++A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA 
Sbjct: 62  KPYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K +  LL D+ K+TVDF PN+D S +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGE +D  V +IDNPD D+D LM+ I+GPDFPTGA+I+G+  I  AY TGRG +
Sbjct: 182 SIPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIMGKDSIAEAYRTGRGKV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE+    ++QIVVTEIPYQVNKA ++E+IAELV++KRI  I+DLRDES+R G 
Sbjct: 242 KVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR  +A+++LN LY+++ L+  FS+ M++L    P    L  IL  +V  +++V
Sbjct: 302 RIVIELKRDVNANIVLNNLYKHSQLEDTFSIIMLSLVNGVPRILNLKQILHYYVEHQKDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTK+ LNKA+ RAH+L GL IA+  +DEV+ +IR S N + A+  LM +        
Sbjct: 362 VTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDK-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AIL++RL +LTGL R+ +  E N L  +I+   
Sbjct: 414 ------------------FKLSEIQAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+    LLG+IK E+L +K +    RRT I     +++ +D I  E++ +T++H GY+
Sbjct: 456 SILADEQLLLGVIKDEILEIKKKYSDARRTEIRHAEGEIDIKDLIDDEEITITLTHFGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  Y++QRRGG+G S + +R+EDFV  L    TH  +LFF++ G V++   + +P 
Sbjct: 516 KRLPLDTYKSQRRGGRGISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPE 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L   E+I T++    D  + ++ Y++ ATK G V++ K S+F  I
Sbjct: 576 GKRQAKGTAIVNLLQLGPNEKIATLIEV--DGRADDDSYLLLATKKGIVKKTKRSEFKNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG IA+ L   DE++ V+T   E D+LL T  G  +RF    IR   GR ++GV+GI+
Sbjct: 634 NKSGLIAIGLRDDDELIDVKTTNGEKDVLLVTSNGMSIRFDEKDIRPM-GRTAMGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++GD+V+SM++    +             +      S             ++     E 
Sbjct: 693 LSEGDKVVSMSLSDEGEDLLVVSQNGYGKRTDINEYRSQI--RAGKGIKTYNMSEKTGEI 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +   E  ++ ++  G   R    D  +  R   G++       ++   +V++  ++
Sbjct: 751 VGATMVNNEDELMLINSDGVLIRLRVDDISVFGRITSGVKLMKT---DDEVNVVSIAKID 807

Query: 849 DNDQ 852
             ++
Sbjct: 808 TEEE 811


>gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 867

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/924 (37%), Positives = 510/924 (55%), Gaps = 100/924 (10%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   +      + + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDEQTTDARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    +++PD   + L+E    +I GPDFPTGA ILG 
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+  I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299

Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE S R G R+VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRTK+ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  LM+                           + +  +Q  AIL L+L RL  L R  I
Sbjct: 420 RAGLME--------------------------LLDVDAIQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL+   R   II  EL  + D+    RRTRI+    +M  ED I
Sbjct: 454 MDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    E I  ++     E   +  ++V +TK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYE---DADFLVLSTK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V++  LS +      G IA+ L        DE++S +T   + D++L ++ GQ VRF
Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRF 690

Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                 +R   GR++ GVRG+     D+++SM +                          
Sbjct: 691 TATEDQLRSM-GRSTSGVRGMKFRGDDELLSMEVPRDNTD-------------------- 729

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            +L V+E G+ KRT   ++   +R   G
Sbjct: 730 ---------------------------------LLIVTESGYAKRTPVDEYPTKSRGTLG 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           +R   +  ++E G LV    V  ++ ++++++ G L++V  +++R  +R T GV+     
Sbjct: 757 VRVGKL--VDERGDLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPD 814

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
           + +R++++ R  +S   DE + +E
Sbjct: 815 EGDRIIAITRNPDSGDEDETDESE 838



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 14/257 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTS 588
                D +V  +  G VK+ PLS+Y + R GG     +   ++    +L           
Sbjct: 618 TYEDADFLVLSTKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADED 677

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  S  G   +             R  + +  +     +           E   +N  +
Sbjct: 678 LILVSRDGQAVRFTATE-DQLRSMGRSTSGVRGMKFRGDDE------LLSMEVPRDNTDL 730

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705
           +  T+ G  +R  + ++   +R           DE    +       + D+++ T+ G+ 
Sbjct: 731 LIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGDLVGALVVRPDEDVMVITESGKL 790

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           V+   S +R    RN++GV      +GD++I++     +  + +                
Sbjct: 791 VQVNASDVRP-TARNTMGVIFARPDEGDRIIAITRNPDSGDEDETDESENTESMEGTDAP 849

Query: 766 SGDTEEITSLKNDSSVE 782
           + +        + +  +
Sbjct: 850 ADEASAPAGGDDTADTD 866


>gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 928

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +       +            +    +  E +
Sbjct: 893 EEVIDGVIVDAAEAEVGDAGEDLQADAAPDEDEPQ 927


>gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1]
 gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC]
 gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10]
 gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC]
          Length = 830

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/899 (38%), Positives = 530/899 (58%), Gaps = 91/899 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+  PD+ ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKV 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ +    E I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G R
Sbjct: 243 RARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A+V  R EV+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWVRHRTEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ LD+VV  IR S + E A+ +L+++         
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q+ AILELRL +LTGL  + I+ E + L  +I     
Sbjct: 414 -----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II+ EL  ++    TPRRT I        + ED I  E +++T+S   YV
Sbjct: 457 VLADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPVKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +V   +++  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V++  IV                                           
Sbjct: 693 GVSLKNEKDRVVACQIVRDD---------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        Q +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 713 -------------QSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +V++E++  +E  
Sbjct: 758 ISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDE 816


>gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
 gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3]
          Length = 830

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/899 (38%), Positives = 529/899 (58%), Gaps = 91/899 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+  PD+ ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKV 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ +    E I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G R
Sbjct: 243 RARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++  +V  R EV+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISVWVRHRTEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ LD+VV  IR S + E A+ +L+++         
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q+ AILELRL +LTGL  + I+ E + L  +I     
Sbjct: 414 -----------------FGFTEHQSIAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II+ EL  ++    TPRRT I        + ED I  E +++T+S   YV
Sbjct: 457 VLADEGLVKDIIRNELQELQKLHKTPRRTTIEFDADDIRDIEDIITNEPVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKHGVVKKVALDAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +V   ++E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V++  IV                                           
Sbjct: 693 GVSLKNEKDRVVACQIVRDD---------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        Q +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 713 -------------QSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             V D+D I+L+S +G  IR+ + ++R+  R+T+GV +    + + +V++E++  +E  
Sbjct: 758 ISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKEGDTLVAMEKLSLNEDE 816


>gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32]
          Length = 828

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/896 (40%), Positives = 546/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ ++    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNSVN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  +PRRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   ++   +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNEDDFVVGAVVISDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 89/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +   A       +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562
           + ++  +    + +    +L+         +++V  +  S      +  L   +      
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K    + ++    +    I   + ++L          +   RL         +      
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SPRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILV 856
           + +   ++ G  KRT+  +F  SNRS  GIRA  + +      LV+   V+ D   +++ 
Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKDAKHLLIA 667

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+ P+ ++R   R T+GV+     +D+ VV    I + 
Sbjct: 668 SYLGIFIKFPLEDVREIGRTTRGVIGIRLNEDDFVVGAVVISDD 711


>gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16]
          Length = 828

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/896 (40%), Positives = 545/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++V+LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEVVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELIADLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV++  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSIISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 100/272 (36%), Gaps = 61/272 (22%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
               ++   N   VV  +  G V+R  L  + + NR   GK++      D I +      
Sbjct: 495 NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANT 554

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD 749
            + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  MA +   D    
Sbjct: 555 HDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD---- 607

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                          E+ +   ++ G  
Sbjct: 608 --------------------------------------------FSDERSLAFFTKNGVV 623

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVN 868
           KRT+  +F  SNRS  GIRA  + +      LV+   V+ N   +++ S  G  I+ P+ 
Sbjct: 624 KRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIASYLGIFIKFPLE 679

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++R   R T+GV+     +++ VV    I + 
Sbjct: 680 DVREIGRTTRGVIGIRLNENDFVVGAVVISDD 711


>gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d]
          Length = 828

 Score =  802 bits (2072), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/896 (39%), Positives = 546/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELIIDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL+  E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLDPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   ++   +L+ + LG  ++F +  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKDAKHLLIASYLGLFIKFSLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIKLNENDFVVGAVVINDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKG+    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 61/272 (22%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
               ++   N   VV  +  G V+R  L  + + NR   GK++      D I +      
Sbjct: 495 NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANT 554

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD 749
            + +L  T  GQ     +  I   A R ++G   V  ISL   +++  MA +   D    
Sbjct: 555 HDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLDPDEKI--MATLSTKD---- 607

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                          E+ +   ++ G  
Sbjct: 608 --------------------------------------------FSDERSLAFFTKNGVV 623

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVN 868
           KRT+  +F  SNRS  GIRA  + +      LV+   V+ D   +++ S  G  I+  + 
Sbjct: 624 KRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKDAKHLLIASYLGLFIKFSLE 679

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++R   R T+GV+     +++ VV    I + 
Sbjct: 680 DVREIGRTTRGVIGIKLNENDFVVGAVVINDD 711


>gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
 gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548]
          Length = 885

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/897 (39%), Positives = 530/897 (59%), Gaps = 58/897 (6%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I D M  +YL Y+++V +GRAIPD+RDGLKPV+RRIL+ M Q+G+  +   VKCAR+
Sbjct: 10  QVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARV 69

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            GEVMGKYHPHG+AAIYDAL R+AQD+S+R  LIEGQGNFG++DGDP AA RYTECR+++
Sbjct: 70  VGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMER 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTV+  PN+D S  EP VL ARYP +LVNG  GI VGMAT+IP HNLGE
Sbjct: 130 LAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGE 189

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+D  + ++DNP   +D LME + GPDFPTGA+I GR  ++  Y TG GSI IR  + I 
Sbjct: 190 VIDATICLLDNPKATVDELMEYLPGPDFPTGAIIRGRYSMRQFYQTGHGSIKIRAKADII 249

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKR 316
           +    REQI+V+EIPY + K  +++KIAELV +KRI  I+ LRDES ++ G R+VIE+KR
Sbjct: 250 E-KDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIKR 308

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           GA   V+LNQL+ +T L++     M+ ++  +P    L+ +L+A++  R EV+VRRT + 
Sbjct: 309 GAMGSVVLNQLFAHTMLETTIGCTMLVVDHNRPRTMNLVQVLQAYIDHRLEVIVRRTLFE 368

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA+ RAH+L GL  A+AN+++VV+IIR S + + A   L+ R                
Sbjct: 369 LKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIAR---------------- 412

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        +++Q  AIL++RL +LTGL  + +  E   L   I+    + +SR  
Sbjct: 413 ----------FEFTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREM 462

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            LG+IK EL  ++++   PRRT I     D+   D I R   V+TVS+ GY+KRVP   Y
Sbjct: 463 QLGVIKDELKEIREKYADPRRTEITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTY 522

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           R Q RGGKG  G+  ++ED V  LF   +H  + FF+  GF+Y   V+ +P GS   +G+
Sbjct: 523 RTQHRGGKGIIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGR 582

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
           A+ N++ +  GE+I  ++   ++E    N Y+V A++ G +++++L+ F  + R G  A+
Sbjct: 583 AITNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRAL 642

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLA-KGD 733
            ++  D+++        N+ILL+TK G    F      IR   GR + GV G+    +GD
Sbjct: 643 VIEEDDDLIGAGISENGNEILLSTKFGMACLFDQDDDQIRPM-GRTARGVTGMRFKIEGD 701

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+S+ I+                            EE    +    VE  +  +    +
Sbjct: 702 SVVSLEIIREH-----------------------LYEEPAEDEEGEEVEVEVDVDEEMPV 738

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 +L V++ G GKR+    +R + R  KG+    + +      +++V  + + D+I
Sbjct: 739 VGSGPEVLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGET---VLSVVQITEEDEI 795

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +L +++G L+R+P +EIR   RA+ GV I +    +R+  V ++ E ++     + E
Sbjct: 796 LLTTERGQLVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEE 852



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  T  G  +R+ +S + +  R   G + +KL   + +LSV   T+E++ILLTT+ GQ 
Sbjct: 745 VLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGETVLSVVQITEEDEILLTTERGQL 804

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VR P   IR   GR S GVR ++L  GD++  +A ++  D             S++    
Sbjct: 805 VRIPAHEIR-RVGRASYGVRIMNLNSGDRITGVAKLVEVDVPKSPATEEGGAESSETPAE 863

Query: 766 SGDTEEITSLKNDSSVEGNISE 787
               E   +   +        E
Sbjct: 864 VPVAEIPATEPAEDGANPPAGE 885


>gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a]
 gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 925

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 97/270 (35%), Gaps = 15/270 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                        D        + +S E  
Sbjct: 893 ELVDGVIVDAAEVDDAGEDLQADAASDEDE 922


>gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 925

 Score =  802 bits (2071), Expect = 0.0,   Method: Composition-based stats.
 Identities = 377/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                     +  D        + +S E  
Sbjct: 893 ELVDGVIVDAVEVDDAGEDLQADAASDEDE 922


>gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB
           3335]
 gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 928

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 531/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKVRIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +       +    +       +    +  E +
Sbjct: 893 EEVIDGVIVDAAEVEVDDAGEDLQADAAPDEDEPQ 927


>gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115]
 gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A)
           (DNA topoisomerase II) [Deinococcus deserti VCD115]
          Length = 811

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/891 (39%), Positives = 520/891 (58%), Gaps = 86/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDGLKPV RRI++ M+  G+  N+K+ K 
Sbjct: 3   GIHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM KYHPHG+++IYDA+ R+AQ W++R  ++  QGNFGS+DGDPPAA RYTE R
Sbjct: 63  ASVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  L+ DL K+TVD +PNYD + +EP VL A  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+ID+P++ LD LME + GPDFPTG  I  +TGI+ AYATG   + +RG +
Sbjct: 183 LTEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRIT-KTGIREAYATGHSGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIE 313
            IE+    R QI+++EIPYQVNK  +++ I+ + +  +I DI+ LRDESDR+   R+V+E
Sbjct: 242 RIEE-KNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRGA   ++LNQLY+YT LQ+ ++V  +++ G +P    L+  ++ F+  R +VV RRT
Sbjct: 301 LKRGAIPTLVLNQLYKYTQLQTTYTVINLSIVGGEPRVLPLLNTMQYFLDHRADVVTRRT 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAHVL GL  A+ ++DEV+ +IR S     AR  LM R             
Sbjct: 361 RYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q++AIL++RL RL GL R+ ++ E + L   I+    IL  
Sbjct: 408 -------------FGLTEIQSQAILDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              L   IK+E+ +++D     RR+ I E   D+  ED I  EDMV+T++  GY+KR  L
Sbjct: 455 EKLLWREIKKEIRAIRDNYGDERRSTITELEEDIGKEDLIAVEDMVITMTKAGYLKRTKL 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             YRAQ RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP     A
Sbjct: 515 DAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDA 574

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N+L          I               +FAT+ G V++  ++++  I  +G 
Sbjct: 575 KGTHIRNLLP--SLREDENIASVLSVGGFDEPGCFIFATRKGVVKKTLITEYGNITSAGL 632

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG- 732
           IA+ L   DE++ V      + ++L T+ G+ +RF    +R   GR + GV GI L +G 
Sbjct: 633 IAINLQPGDELIGVGIVNDIDHVVLATRNGKAMRFESDEVRA-TGRATQGVIGIRLREGE 691

Query: 733 -DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D V+SMA+V   D   +                                          
Sbjct: 692 DDAVVSMALVPGGDEASE------------------------------------------ 709

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +L VSE G GKRT   D+    R G G+   DV++  + G LV +  V  N+
Sbjct: 710 --------LLAVSECGLGKRTPVGDYPAKGRGGMGVITLDVTE--KTGKLVTLARVAGNE 759

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++++++KGT+IR  V E+R+  R  +GV + + A+ + V+S   IR  + 
Sbjct: 760 ELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIAERDSVISAFPIRREDE 810



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 96/268 (35%), Gaps = 68/268 (25%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  TK G ++R KL  +    R G+ +   KL   D    V   +  + +L  T  G+ 
Sbjct: 500 VITMTKAGYLKRTKLDAYRAQGRGGRGSSGGKLREEDVNTRVFVGSTHDYLLFFTDQGRV 559

Query: 706 VRFPISAIRVFAGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSA 760
               I  +   AGR++ G   I      L + + + S+  V   D               
Sbjct: 560 FHEKIYDL-PEAGRDAKGTH-IRNLLPSLREDENIASVLSVGGFD--------------- 602

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RI 819
                                                 FI   + KG  K+T   ++  I
Sbjct: 603 ----------------------------------EPGCFI-FATRKGVVKKTLITEYGNI 627

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           ++    G+ A ++        L+ V  VND D ++L +  G  +R   +E+R   RAT+G
Sbjct: 628 TS---AGLIAINLQPG---DELIGVGIVNDIDHVVLATRNGKAMRFESDEVRATGRATQG 681

Query: 880 VVIFST--AKDERVVSVERIRESEIVDE 905
           V+       +D+ VVS+  +   +   E
Sbjct: 682 VIGIRLREGEDDAVVSMALVPGGDEASE 709


>gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 812

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/893 (40%), Positives = 516/893 (57%), Gaps = 86/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S SI DEM  SY+ Y+++VI+GRAIPD+RDGLKPV R+ILFGM+++G+  N+ Y K
Sbjct: 3   EEIISRSINDEMITSYMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEVMGK+HPHG+ AIYDAL RMAQ +S+R  LI+GQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARIVGEVMGKFHPHGDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+Q+ A  LL D+ K+TV   PN+DGS  EP VL A+ PN+L+NG  GIAVGM TNIP H
Sbjct: 123 RMQRLAEELLADIDKNTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+V+   A+IDNPD  ++ LME ++GPDFPTG +I+GR GIK  Y TGRG +V+RGV
Sbjct: 183 NLSELVEALTALIDNPDATIEELMEYVKGPDFPTGGIIMGRDGIKKMYETGRGRMVVRGV 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G   +IV++EIPY V+KA ++++IA + +  R + + ++RDESD++G RVVIE
Sbjct: 243 AEIEEAKGG-TRIVISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           LKRGA  +V+LN LY++T LQ+ F  +M+ ++  K P+   L  I +AF+  R EVV RR
Sbjct: 302 LKRGADPNVVLNLLYKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L +A  +AH+L GL  A   +D VV IIR S N + A   L +             
Sbjct: 362 TEYELEQASKKAHILEGLTKASRAIDTVVDIIRNSKNIQEASVNLQE------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T+ ++  Q++AILE+RL +LT L  D +  E   L  +IKE  +ILS
Sbjct: 409 -------------TLEITPEQSQAILEMRLGKLTALEIDKLVTEYAELVEKIKEYREILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
               +  IIK+EL  ++ +    RRT+I      D   ED I  +++VVTV+  GY+K  
Sbjct: 456 DDKNIYQIIKKELQELEAQYGDARRTKISIDGNTDFNVEDVIPDDEVVVTVTKKGYIKAT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  YR Q RGGKG  GV   D DFVT++   +  +  +  +S G  Y    + L   S 
Sbjct: 516 PLEDYRKQGRGGKGIRGVKTTDADFVTNVVSTTRLSKTVVITSKGKAYFINNYELECTSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            +RGK L N + +   E +  ++    +E    N +++  T+ G ++R     FI    S
Sbjct: 576 SSRGKLLANYVKIEPDETVQAVLSVKREE--VANKHLIITTRKGKIKRTPFEAFINSRTS 633

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ L+  D ++     T +E  I+++T+ G  +RFPIS IR   GR + GV+ ++L 
Sbjct: 634 GIKAITLNEGDSVVDAGISTSEEETIIISTRKGMVIRFPISQIRPM-GRTAAGVKAMALR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+S  IVL  D                                             
Sbjct: 693 GDDEVVSATIVLPVD--------------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E+++ T +E+G GKRT   ++R  +R+G G++     +    G +V    V + 
Sbjct: 708 ------ERYLFTATERGVGKRTPLSEYRPQHRAGMGVKNIYGLER--TGYVVGSLVVTNE 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+II+++  G  IR+P  +IR   R TKGV +     D+ V S+  + +   V
Sbjct: 760 DEIIVITKNGMSIRIPAADIRPTGRVTKGVKVVELRDDDTVASLAVVVDQAEV 812


>gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
 gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253]
          Length = 831

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/913 (38%), Positives = 524/913 (57%), Gaps = 93/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+       +E  + + SV + DEM+ SY+ YA++VI GRA+PD+RDGLKPVH+RIL+ M
Sbjct: 1   MSSDTSDLPDEVAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + GV  N  + K + I G+ MG +HPHG+ +IYDALARMAQ +S+R  LI+GQGNFGSV
Sbjct: 61  HRSGVTSNASHRKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+   +  +L D+  DTVDF+PNYDG  +EP VL +  PN+L+NG  
Sbjct: 121 DGDPPAAMRYTEARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGEV+D  V +IDNPD  ++ LME ++GPDFPTGA I+GR  I  A
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIVGRNAIHQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R    ++      ++IV+TE+P+Q NKA ++++IA+ V +  I  I DLR
Sbjct: 241 YKTGRGRLRVRAEYEVQD-----DRIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+ELK+ A  +V+ NQL  +  L+  FS+  +AL   +P+  TL  +L+ 
Sbjct: 296 DESDRDGIRVVVELKQNAIPEVVENQLLNH-RLERTFSIISLALVDGQPKVLTLKELLQH 354

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R +VV RR+++ L++A +RAH+L G   A+ N+D+VV +IR + + + AR      
Sbjct: 355 YLDHRRDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARS----- 409

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                G  GT   SE Q   I+ ++L  LT L  ++I  E   +
Sbjct: 410 ---------------------GLQGTFDFSEKQAEHIVRMQLGSLTSLESEEIEAEYEDV 448

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+    IL   S LLG+IK+ELL +K++    RRT+IVE   ++  ED I  ED+ V
Sbjct: 449 TARIERLETILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSEVTREDLIAEEDVFV 508

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            V+   YVKR+P+  + AQ RGGKG  G  ++++D V+ +F  +TH  +L F++ G VY+
Sbjct: 509 VVTEQDYVKRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYR 568

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  ARGK+ +NIL L++GE IT ++   E E    +  +   T+ G V+R 
Sbjct: 569 LKTYEIPEMSRTARGKSAVNILDLDKGEDITAVITTDEFE---EDESLSMVTQQGYVKRT 625

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              +F  I  +G IA +L+  D+++ V+      D+L++TK G  +RF  +  R   GR+
Sbjct: 626 AAKEFENILSTGIIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREM-GRS 684

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D+V+ M        D                                 
Sbjct: 685 ARGVHGIRLDDDDEVVGMVAANGDVDD--------------------------------- 711

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +LTV+ +G+GKRT   ++R  +R+GKG+        N  G 
Sbjct: 712 -------------------LLTVTRRGYGKRTKLTEYRSQSRNGKGLIDIKTGDRN--GH 750

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +  +  V ++D ++L+S++G ++R+   +I    R T GV +    +D+RV SV+ I   
Sbjct: 751 VTEIKTVIEDDHLVLMSERGQIMRIRAEDISEVGRNTMGVTVMDVDEDDRVASVDVIPAE 810

Query: 901 EIV---DEAESTE 910
                 D+AE+ E
Sbjct: 811 AAEAVPDDAETAE 823



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 133/394 (33%), Gaps = 35/394 (8%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +  L   + +  E++ +I+        +    +R+    D  +    +         D 
Sbjct: 451 RIERLETILGDESELLGVIKEELLEMKEKYADERRTKIVEDTSE----VTREDLIAEEDV 506

Query: 446 TMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            + ++E     +  + + +    GR        +    +    +   ++   LL      
Sbjct: 507 FVVVTEQ--DYVKRMPIEQFDAQGRGGKGIIGADVKEDDTVSKVFRANTHDYLLCFTNHG 564

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS--------------HLGYVKR 550
            +      + P  +R   G   +   D    ED+   ++                GYVKR
Sbjct: 565 QVYRLKTYEIPEMSRTARGKSAVNILDLDKGEDITAVITTDEFEEDESLSMVTQQGYVKR 624

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                +      G       + D D + D+ +      +L  +  G   +          
Sbjct: 625 TAAKEFENILSTG--IIAARLEDGDKLVDVKVTDGTKDLLVSTKNGMTIRFDETEAREMG 682

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG      + L+  + +  ++    D        ++  T+ G  +R KL+++   +R
Sbjct: 683 RSARGVHG---IRLDDDDEVVGMVAANGDVDD-----LLTVTRRGYGKRTKLTEYRSQSR 734

Query: 671 SGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +GK  + + + D    V       +++ ++L ++ GQ +R     I    GRN++GV  +
Sbjct: 735 NGKGLIDIKTGDRNGHVTEIKTVIEDDHLVLMSERGQIMRIRAEDISEV-GRNTMGVTVM 793

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            + + D+V S+ ++    A+           S  
Sbjct: 794 DVDEDDRVASVDVIPAEAAEAVPDDAETAEESEP 827


>gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
 gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2]
          Length = 894

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/897 (38%), Positives = 532/897 (59%), Gaps = 84/897 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +   G++ + +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+  + 
Sbjct: 65  TDPINGLSPIKVDSEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSS 124

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD  AA R
Sbjct: 125 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMR 184

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +LD + KDTV+F  NYD S  EPVVL +R+PN+LV+G  GIAVGMAT 
Sbjct: 185 YTEARMSKLAAEMLDGIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATE 244

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E ++  +A   NP+I    LME I+GPDFPTGA ILG  GI +AY TG+G I 
Sbjct: 245 IPPHNLTETINATIAFARNPEITTKELMEHIKGPDFPTGATILGVKGIYDAYETGKGKIP 304

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ +  + +I++TEIPY V K  ++EKI EL ++K +  I +LRDES+R+G R
Sbjct: 305 LRSQAKIEEFANGKSRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIR 364

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+G +A ++LN+LY+ + LQ+  + N+VAL   +P+   L  IL  ++  + EVV
Sbjct: 365 IVIDVKKGYNAHILLNKLYQKSYLQTNVNANLVALVHGEPKLLNLKQILSIYLDHQIEVV 424

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KA+D+ H+L GL IAV+N+DEVV+II+ S N   A+  L +R         
Sbjct: 425 TRRLKFDLEKAQDKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKR--------- 475

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ QT+AIL++ L RLTGL  + +  E++ L  EI     
Sbjct: 476 -----------------FNLSDRQTKAILDMNLRRLTGLNIEKMNLEIDELNKEISYLKG 518

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL SR  L+ +I  EL  ++D     RRT+I E     + DED I   ++V+T S  GYV
Sbjct: 519 ILESREALINLIIDELSEIRDRFGDERRTQIDEFTVSSISDEDLIPVNNIVITTSVKGYV 578

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y  Q RGG G S +   D+D ++ +   +THT ++ F++LG VY+ +  ++P 
Sbjct: 579 KRMKLEDYNMQNRGGIGVSTMKTYDDDDISKILQTTTHTDLMLFTNLGRVYRIRAHQVPE 638

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS Q++G   INI+     +    ++     +   ++ ++V  T+ G +++  LS++  I
Sbjct: 639 GSKQSKGTPFINIIPSLNEKEGEKVVSLLSVDEYNDDHFLVTITEKGVIKKTALSEYESI 698

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +GK A +L   D +++    T EN+IL+ +     V+F    +R  + RNS GVRGI 
Sbjct: 699 RSNGKNAFRLKEDDHLVNAFIVTDENEILIASNGKNVVKFSSLDLRPLS-RNSQGVRGIR 757

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +  +VI+ +                                                 
Sbjct: 758 LDENKKVIAAS------------------------------------------------- 768

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                 L  +FIL++  KGFGK T S +FR+  R GKG+ A +    ++ G L+    VN
Sbjct: 769 ----SDLDGEFILSIGTKGFGKLTHSDEFRLIKRGGKGVTAIN---ADKAGDLIFAKFVN 821

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            ND+ ++++  GT IR+ ++++ + SRATKGV I +  +++ +++VE ++  E +++
Sbjct: 822 KNDEALIITSSGTTIRISISQLSVTSRATKGVKIINLRENDEIIAVEIVKTEEEMED 878


>gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894]
 gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894]
          Length = 856

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/939 (38%), Positives = 522/939 (55%), Gaps = 116/939 (12%)

Query: 1   MTEHII----SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+ I        E     +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+
Sbjct: 1   MTDEIPGGIPELPEVHHGHVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRV 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           ++ M   G   ++ + KCAR+ G+VMGKYHPHG++AIYDA+ R+ QDWSLR  L+ GQGN
Sbjct: 61  IYAMYDGGYRPDRGFSKCARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS   DP AA RYTECR+   A  ++ D+ KDTVDF+ NYDG  QEPVVL AR+PN+LV
Sbjct: 121 FGSPGNDPAAAPRYTECRMAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLV 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVIL 232
           NG  GIAVGMATNIP HNL EV +G    + +P+   +     LM+ ++GPDFPTGA IL
Sbjct: 181 NGSAGIAVGMATNIPPHNLREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQIL 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           G  GI+ AY TGRGSI +R V ++E+   +R  +VVTE+PYQVN   +  KIA+LV + R
Sbjct: 241 GTKGIEEAYRTGRGSITMRAVVNVEEIQ-NRICLVVTELPYQVNPDNLAAKIADLVNDGR 299

Query: 293 IVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P  
Sbjct: 300 LQGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFGANMLALVDGVPRT 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L   ++ +   + EV+ RRT YLL  A  R H+L G   A+  LD+V+ +IR SP+ +
Sbjct: 360 LSLDAFIRHWTTHQMEVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDAD 419

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR  LM+                           + + E+Q  AIL L+L RL  L R 
Sbjct: 420 QARAGLME--------------------------LLEIDEIQANAILNLQLRRLAALERQ 453

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E  ++  EI +  DIL+   R   I+ +EL  + ++    RRT I+    DM  ED
Sbjct: 454 RIIDEHAAIEAEITDLQDILAKPERQRSIVGEELDGIVEKYGDERRTHILPYDGDMSMED 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  E++VVT++  GY KR     YR Q+RGGKG  G  +R++D V   F+ +TH  +LF
Sbjct: 514 LIPEEEVVVTITRGGYAKRTRSDAYRQQKRGGKGVRGTQLREDDIVDHFFVTTTHHWLLF 573

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VY+ K + LP GS  ++G+ + N+L+   GE I  ++   + +      Y+V A
Sbjct: 574 FTNFGRVYRAKGYELPEGSRDSKGQHVANMLAFQPGEHIAQVLDLRDYD---AAEYLVLA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCV 706
           T+ G V++ +L ++     +G IA+ L        DE++         D++L ++ GQ +
Sbjct: 631 TRRGLVKKTRLQEYNSPRSAGLIAINLREDEDGQPDELIGAMLVDSSQDLILVSRKGQSI 690

Query: 707 RFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           RFP +   +R   GR + GV G+   +GD+V++ A+V                       
Sbjct: 691 RFPAADESLRPL-GRATSGVTGMKFREGDEVLTAAVVRE--------------------- 728

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT--SSYDFRISNR 822
                                           + F+ TV+E G  KRT  S  ++R   R
Sbjct: 729 --------------------------------DAFLFTVTESGLAKRTELSVDNYRQQGR 756

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GIR  ++ +  E G LV    V+D+D+++++ ++G ++R  V E+R   R T+GV  
Sbjct: 757 GGLGIRVANLPE--ERGDLVGALVVDDDDEVLVIMERGKIVRSAVAEVRATGRTTQGVTF 814

Query: 883 FSTAKDERVVSVER------------IRESEIVDEAEST 909
               K +R+++V R            + ES  VDEA+  
Sbjct: 815 AKPDKGDRIIAVARNVERREEEESASVDESVPVDEADDD 853


>gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 928

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 530/885 (59%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LTQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEAELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +    G IA++LD  D +
Sbjct: 663 NSNETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSVGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/256 (17%), Positives = 97/256 (37%), Gaps = 15/256 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +   +  G VK+ PL  +  QR  G     + + + D +    I      ++ FS  G
Sbjct: 684 PFIFMSTANGTVKKTPLVAFSRQRSVG--LIALELDEGDILISAAITDGEQEIMLFSDGG 741

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V + K   +      ARG   +  + L +G+++ +++             ++ A++ G 
Sbjct: 742 KVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML------IPEEGSQILTASERGY 792

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  +S+F +  R G+  + + S +     +         +I+L +  G  VR  +  +
Sbjct: 793 GKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEEIMLISDQGTLVRTRVGEV 852

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GRN+ GV  I LA  ++++ +  V        E +   + +      +     E  
Sbjct: 853 SSL-GRNTQGVTLIKLASDEKLVGLERVQEPSLVEGEELEGEEVVDGLVAGVIDADVEDA 911

Query: 774 SLKNDSSVEGNISEER 789
                +    +  E +
Sbjct: 912 GEDLQADAAADDDEPQ 927


>gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
 gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911]
          Length = 844

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/836 (43%), Positives = 528/836 (63%), Gaps = 37/836 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     +T ++I+ EM++S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPSSRVTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD++ R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D++ NYDG  +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTESRMSKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGE++DG +A+   PDI +  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMILGRSGIRKAYETGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE  S  +E I+V EIPYQVNKA ++EKIAELVR+K++  I DLRDESDR G R
Sbjct: 243 LRAKVDIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+++ A+A VILN LY+ T+LQ+ F +NM+AL   +P+   L   LK ++  ++ V+
Sbjct: 303 IVIEVRKDANASVILNNLYKLTALQTSFGINMLALVDGQPKVLNLKQCLKYYLDHQQVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA+ RAH+L GL IA+ +LDEV+ +IR S   E AR  LM +         
Sbjct: 363 RRRTEFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I +E  SL   I E   
Sbjct: 414 -----------------FELSDKQAQAILDMRLQRLTGLEREKIEDEYQSLVKLIAELEA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+   ++L II++EL  +K+  +  RRT IV  G+  +EDED I RE++V+T++H GYV
Sbjct: 457 ILADEEKVLEIIREELTEIKERFNDERRTEIVSGGIEQIEDEDLIPRENIVITLTHNGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+S YRAQ+RGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPVSTYRAQKRGGRGIQGMGTNEDDFVEHLITTSTHNTLLFFTNKGKVYRAKGYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A+G  +IN+L +N+ E +  ++P  E     +  ++ F TK G  +R+ L+ F  I
Sbjct: 577 FSRTAKGIPIINLLGINKDEWVNAVIPVEEFV---DEWFLFFTTKEGISKRSPLTSFGNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   DE++SV       +I++ TK GQ +RFP + +R   GR + GV+GI+
Sbjct: 634 RNNGLIALNLREGDELISVRLTDGSKEIIIGTKNGQLIRFPETDVRSM-GRTATGVKGIT 692

Query: 729 LAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D+V+ M ++  +++     +  Y K        + G   +     N +   G I  
Sbjct: 693 LDSDDEVVGMEVLEENSEILMVTKKGYGKRTPEMEYRVQGRGGKGIKTGNITDKNGTIVA 752

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +       E+ I+ ++  G   R +  D     R+ +G+R   ++  +  G  VA
Sbjct: 753 VKVV---TGEEDIMLITTGGVLIRMAVGDISTMGRNTQGVRLIRIN--DSEGEYVA 803


>gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 928

 Score =  802 bits (2070), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/885 (42%), Positives = 532/885 (60%), Gaps = 52/885 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTIDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G 
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIEL+RG   +V+LN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EV
Sbjct: 303 RVVIELRRGEVPEVVLNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + 
Sbjct: 363 VTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVV 422

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E   +
Sbjct: 423 EMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEI 482

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VV
Sbjct: 483 LNQIGELIRILNSATRLMEVIREELEVIRSEYGDARRTEILDARLDLTLGDLITEEERVV 542

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY 
Sbjct: 543 TISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYW 602

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS------------------ 642
            K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                     
Sbjct: 603 LKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAE 662

Query: 643 ------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                                 ++  +T +G V++  L  F +   SG IA++LD  D +
Sbjct: 663 NSSETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDIL 722

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +S      E +I+L +  G+  RF  S +R   GR + GVRG+ L++G ++ISM I    
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLSEGQKLISMLIPEEG 781

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                         +A              +   S+          Q L  +E  I+ +S
Sbjct: 782 SQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLIS 839

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           ++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 840 DQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 881



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 100/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 665 SETEEERKACIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 722

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L++G+++ +++   
Sbjct: 723 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLSEGQKLISML--- 776

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 777 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 833

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 834 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 892

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +       +            +    +  E +
Sbjct: 893 EEVIDGVIVDAAEAEVGDAGEDLQADAAPDEDEPQ 927


>gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30]
          Length = 828

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/896 (40%), Positives = 546/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRTKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR I+ S +PE A+  L++R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ + LG  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R++ GVRGI L + D V+   ++                                     
Sbjct: 686 RSARGVRGIKLNENDFVVGAVVINDDSNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IR+ + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRISIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 97.6 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 88/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +           +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRTKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562
           + ++  +    + +    +L+         +++V  +  S    V +  L   +      
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIERFTLSEIQ 422

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K    + ++    +    I   + ++L   S      +   RL         +      
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856
           + +   ++ G  KRT+  +F  SNRS  GIRA  + +      LV+   V+ N   +++ 
Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIA 667

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+ P+ ++R   R+ +GV      +++ VV    I + 
Sbjct: 668 SYLGIFIKFPLEDVREIGRSARGVRGIKLNENDFVVGAVVINDD 711


>gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori
           35A]
          Length = 828

 Score =  801 bits (2069), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/896 (39%), Positives = 544/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL R+ I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDEGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVIGDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 88/524 (16%), Positives = 172/524 (32%), Gaps = 64/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +   A       +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562
           + ++  +    + +    +L+         +++V  +  S      +  L   +      
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFTLSEIQ 422

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K    + ++    +    I   + ++L          +   RL         +      
Sbjct: 423 SKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856
           + +   ++ G  KRT+  +F  SNRS  GIRA  + +      LV+   V+ N   +++ 
Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVLDEG---DELVSAKIVDKNAKHLLIA 667

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+ P+ ++R   R T+GV+     +++ VV    I + 
Sbjct: 668 SYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVIGDD 711


>gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57]
          Length = 828

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/896 (39%), Positives = 544/896 (60%), Gaps = 95/896 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+V++I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEAYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y 
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYH 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK+G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKNGVVKRT 626

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAG 718
            LS+F        I A+ LD  DE++S +   +    +L+ +  G  ++FP+  +R   G
Sbjct: 627 NLSEFGSNRSYSGIRAIVLDKGDELVSAKIVDKNAKHLLIASYFGIFIKFPLEDVREI-G 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV GI L + D V+   ++                                     
Sbjct: 686 RTTRGVIGIRLNENDFVVGAVVISDDGNK------------------------------- 714

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +L+VSE G GK+T +  +R  +R GKGI    +++  + 
Sbjct: 715 ---------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KT 751

Query: 839 GALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
           G LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 752 GNLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 805



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 89/524 (16%), Positives = 174/524 (33%), Gaps = 64/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +   A       +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562
           + ++  +    + +    +L+         +++V  +  S      +  L   +      
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFTLSEIQ 422

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K    + ++    +    I   + ++L   S      +   RL         +      
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SQRRTEIQEAYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ     +  I   A R ++G   V  ISLA  +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYHLKVYKI-PEASRIAMGKAIVNLISLAPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856
           + +   ++ G  KRT+  +F  SNRS  GIRA  +   ++   LV+   V+ N   +++ 
Sbjct: 612 RSLAFFTKNGVVKRTNLSEF-GSNRSYSGIRAIVL---DKGDELVSAKIVDKNAKHLLIA 667

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+ P+ ++R   R T+GV+     +++ VV    I + 
Sbjct: 668 SYFGIFIKFPLEDVREIGRTTRGVIGIRLNENDFVVGAVVISDD 711


>gi|187735780|ref|YP_001877892.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
 gi|187425832|gb|ACD05111.1| DNA gyrase, A subunit [Akkermansia muciniphila ATCC BAA-835]
          Length = 873

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/912 (38%), Positives = 526/912 (57%), Gaps = 73/912 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  V +  E+  S+L Y+++VI+ RA+PD+RDGLKP  RRIL+ M ++ +    K 
Sbjct: 2   ENNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKT 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC++I G+ MG YHPHG+AAIY  L  MAQDWS+R +L+ GQGNFG+ DGDPPAA RYT
Sbjct: 62  RKCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAARYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L      L+ DL KDTVDF P YD    EP V  + +PN+LVNGG GIAVGMATN+P
Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG  AVIDNP + ++ L + I+GPDFPTG  +LG +GI N + TGRGS+ IR
Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGFSGIDNYFRTGRGSVRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E T   ++ +++ E+PY VN+AA+ E+IAEL ++K + DI+ +RD SD +   + 
Sbjct: 242 GKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEK-TCIE 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A   V++NQLY+ TS+++ F+VNM+A++  +P+   ++  +  ++  R EVVVR
Sbjct: 301 IELKRDARPQVVMNQLYKLTSMETSFAVNMLAIHDNRPKTLAMMDAINFYIEHRREVVVR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+YLL  A   A  L    +A+ ++D+ + IIR S N + AR  L   +++    + L 
Sbjct: 361 RTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLG 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI   +   G       +E Q  +IL+LRL +LT L  D I  E   L + IK+ LDIL
Sbjct: 421 ILIRSQASIQGDR--YVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDIL 478

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           ++ SR+LGI+K EL ++KD+  TPR TRI+    DM  ED I  + M+VT++H GY+KR 
Sbjct: 479 ANESRVLGIVKDELKAIKDKYATPRVTRIIPFSGDMAIEDLIPNDTMIVTITHSGYIKRT 538

Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             + YR Q RGGKG      R      + DF+  LF    H  ++FF++ G VY ++V+ 
Sbjct: 539 NSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVDRVYE 598

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPF--------PEDESSWNNLYVVFATKHGNV 657
           +   +  A+G+ + N+L L   E I  I+           +   +  +  VVFATK G V
Sbjct: 599 IDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATKDGTV 658

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  L+DF    ++G IA+ L+  + +++ E  +  ++I+L T  G  +RFP   +R   
Sbjct: 659 KKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIRFPEEDLRT-Q 717

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GRN++GVRGI    GD V+++AIV                                    
Sbjct: 718 GRNTIGVRGIRPRAGDYVVALAIVD----------------------------------- 742

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              ++ +L  SE G GKRTS  ++R   R G GI+  + +  ++
Sbjct: 743 ------------------PQKTLLVASENGLGKRTSFDEYRTQGRGGTGIKTMNCT--DK 782

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V+   V+D D+++L++  G  +R+ V  +R   RAT+GV + +  + E +  +  +
Sbjct: 783 TGKVVSATVVSDEDELMLMTTAGQSVRIKVATVRETGRATQGVKLMTLNEGESIQDISIV 842

Query: 898 RESEIVDEAEST 909
              +  +EA + 
Sbjct: 843 IPDDEDEEAPAE 854



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 86/238 (36%), Gaps = 15/238 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VV  +  G VK+  L+ +   R+ G     +   +     +L   S    ++  +  G 
Sbjct: 648 NVVFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAEL--TSGADEIVLVTHDGM 705

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     L        G   I         R                  ++ A+++G  
Sbjct: 706 SIRFPEEDLRTQGRNTIGVRGI---------RPRAGDYVVALAIVDPQKTLLVASENGLG 756

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++    R G     ++  D+    +S    + E++++L T  GQ VR  ++ +R
Sbjct: 757 KRTSFDEYRTQGRGGTGIKTMNCTDKTGKVVSATVVSDEDELMLMTTAGQSVRIKVATVR 816

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
              GR + GV+ ++L +G+ +  ++IV+  D D +         + +         E 
Sbjct: 817 E-TGRATQGVKLMTLNEGESIQDISIVIPDDEDEEAPAETEDAGAGEVSGEMEAPAEE 873


>gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1]
 gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
 gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 836

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRT+I     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIEDIISDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817

Query: 905 EAEST 909
           E E  
Sbjct: 818 ETEEN 822



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 62/409 (15%), Positives = 146/409 (35%), Gaps = 26/409 (6%)

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + +   ++  ++      +      + +++R      +         +   +  D++D+ 
Sbjct: 439 KVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTKIEMDTGDVRDIE 498

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRL--ARLTGLGRDDIRNELNSLGIEIKECLD 489
           D+I D S  I   G  Y+  +  +   E +     +TG       + L ++     +   
Sbjct: 499 DIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYL 558

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVVT 541
           ++ +       +K   L   +      +  I         E            + + +  
Sbjct: 559 LIFTNFGQCYWLKVWQLPEGER-RAKGKPIINFLEGIRPGEQVAAVLNVKRFEQGEYLFL 617

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G VK+V L  + + R+ G     +    ++ +    I +    V+ F+ LG   + 
Sbjct: 618 ATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLFTRLGMAVRF 676

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              ++      ARG   +++ +                +    +  V+    +G  +R+ 
Sbjct: 677 PHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVCDNGFGKRSL 728

Query: 662 LSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           + DF + NR       I +   + D +L   + T  + ILL +  GQ +R  +  +RV  
Sbjct: 729 VCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRINMQDVRVM- 786

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           GR + GVR ++L +GD +++M  +       +        + + +  I 
Sbjct: 787 GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835


>gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 847

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/904 (40%), Positives = 546/904 (60%), Gaps = 68/904 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S   +  K +  VSI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G 
Sbjct: 1   MSELAKANKILIPVSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGN 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K ARI G+V+GKYHPH + A+YDA+ RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 61  DWNKPYKKSARIVGDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K AH LL DL KDTV++ PNYD + Q P V+  R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEVRMSKIAHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL E++DGC+A ID+  I ++ LM+ I GPDFPT A+I G+ GI+ AY TGR
Sbjct: 181 MATNIPPHNLFEIIDGCLAYIDDDKISIEELMKYIPGPDFPTAAIINGKQGIEEAYRTGR 240

Query: 246 GSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           G I IR  + +E + +  RE IVV+EIPYQVNKA ++EKIA+L++EKRI  I+ LRDESD
Sbjct: 241 GKICIRARAIVEVEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G R++I +KR A A+V+LN LY  T LQ  FS+NMVALN  +P+ F+L  IL AF+  
Sbjct: 301 KDGMRIIIGIKRDAVAEVVLNNLYSMTQLQVSFSINMVALNNGQPKIFSLKEILSAFICH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R++++ RRT + L KAR+R H+L  L +A AN++ ++ + R +  P  A+ +L+  +WN 
Sbjct: 361 RQDIITRRTIFELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNL 420

Query: 425 SDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
             I  +                     DG  YL+E Q +AIL+LRL  LT L    +  E
Sbjct: 421 GTIASMQCREVHHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIE 480

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  +I + L IL+   RL+ +I++EL  ++ +   PRRT I     ++  ED I +E
Sbjct: 481 HKELLTKIVDLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKE 540

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVT+S+ GYVK  PL+ Y AQ+RGGKG+S V M++EDF+  L + +TH ++L FSS G
Sbjct: 541 NVVVTLSYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRG 600

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +Y  KV++LP  S  +RG+ ++N+L L   ERITTI+P                     
Sbjct: 601 RMYWMKVYQLPAASRGSRGRPIVNLLPLETNERITTILP--------------------- 639

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                                         V    +  ++ + T  G   +   +A+  F
Sbjct: 640 ------------------------------VRQYEEGCNVFMATASGTVKK---TALIAF 666

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           +   S G+  ++L +GD++I + +  + + +      Y K +      +       T ++
Sbjct: 667 SRPRSAGIIAVNLHEGDELIGVNVT-NGNNEVMLFSAYGKVVRFPETQVRSMGRTATGVR 725

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             +  EG         +   +  ILTV++ G+GKRT+  ++   +R+ +G+ +   S+ N
Sbjct: 726 GINLAEG--DRVVSLIIPNIDGHILTVTQHGYGKRTTQNEYPTKSRATQGVISIKASERN 783

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G ++    V+++DQI+L++D GTL+R  V+E+ I  R T+G+ +  TA++E VV ++R
Sbjct: 784 --GQVIGAIQVDEHDQIMLITDAGTLVRTRVSEVSIVGRNTQGITLIRTAENEHVVGLQR 841

Query: 897 IRES 900
           I E 
Sbjct: 842 IAEP 845



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D    +   + +    R      ++       + +    S    +++  KE  ++T+S +
Sbjct: 490 DLLRILNEPERLMEVIREELNYIQKQYKDPRRTEITTISSNLVIEDMINKENVVVTLSYQ 549

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+ K     D+    R GKG  A  + + + I +L      N +D I+L S +G +  + 
Sbjct: 550 GYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSL---LVANTHDTILLFSSRGRMYWMK 606

Query: 867 VNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
           V ++  ASR ++G   V +     +ER+ ++  +R+ E 
Sbjct: 607 VYQLPAASRGSRGRPIVNLLPLETNERITTILPVRQYEE 645


>gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC
           17982]
          Length = 867

 Score =  801 bits (2068), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/924 (37%), Positives = 511/924 (55%), Gaps = 100/924 (10%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   ++     + + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDEQTTNARHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    +++PD   + L+E    +I GPDFPTGA ILG 
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATILGH 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR+  I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299

Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE S R G R+VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRTK+ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWINHQIDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R  L++                           + +  +Q  AIL L+L RL  L R  I
Sbjct: 420 RAGLIE--------------------------LLDVDAIQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL+   R   II  EL  + D+    RRTRI+    +M  ED I
Sbjct: 454 MDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDKFGDERRTRILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +R +D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGDDVVEHFFVTTTHNWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    E I  ++     E   +  ++V ATK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYE---DADFLVLATK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V++  LS +      G IA+ L        DE++S +T   + D++L ++ GQ VRF
Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADEDLILVSRDGQAVRF 690

Query: 709 --PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                 +R   GR++ GVRG+     D+++SM +                          
Sbjct: 691 TATEDQLRSM-GRSTSGVRGMKFRGDDELLSMEVPRDNTD-------------------- 729

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            +L V+E G+ KRT   ++   +R   G
Sbjct: 730 ---------------------------------LLIVTESGYAKRTPVDEYPTKSRGTLG 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           +R   +  ++E G LV    V  ++ ++++++ G L++V  +++R  +R T GV+     
Sbjct: 757 VRVGKL--VDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPD 814

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
           + +R++++ R  +S   DE + +E
Sbjct: 815 EGDRIIAITRNPDSGDEDETDESE 838



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 14/257 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTS 588
                D +V  +  G VK+ PLS+Y + R GG     +   ++    +L           
Sbjct: 618 TYEDADFLVLATKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKPDELVSAQTIMADED 677

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  S  G   +             R  + +  +     +           E   +N  +
Sbjct: 678 LILVSRDGQAVRFTATE-DQLRSMGRSTSGVRGMKFRGDDE------LLSMEVPRDNTDL 730

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705
           +  T+ G  +R  + ++   +R           DE    +       + D+++ T+ G+ 
Sbjct: 731 LIVTESGYAKRTPVDEYPTKSRGTLGVRVGKLVDERGGLVGALVVRPDEDVMVITESGKL 790

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           V+   S +R    RN++GV      +GD++I++     +  + +                
Sbjct: 791 VQVNASDVRP-TARNTMGVIFARPDEGDRIIAITRNPDSGDEDETDESENTESMEGTDAP 849

Query: 766 SGDTEEITSLKNDSSVE 782
           + +        + +  +
Sbjct: 850 ADEASAPAGGDDTADAD 866


>gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 836

 Score =  800 bits (2067), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRTRI     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F 
Sbjct: 577 EGERKAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817

Query: 905 EAEST 909
           E E  
Sbjct: 818 ETEEN 822



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             + + +   +  G VK+V L  + + R+ G     +    ++ +    I +    V+ F
Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           + LG   +    ++      ARG   +++ +                +    +  V+   
Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719

Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +G  +R+ + DF + NR       I +   + D +L   + T  + ILL +  GQ +R 
Sbjct: 720 DNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +  +RV  GR + GVR ++L +GD +++M  +       +        + + +  I 
Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835


>gi|305681552|ref|ZP_07404358.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
 gi|305658712|gb|EFM48213.1| DNA gyrase, A subunit [Corynebacterium matruchotii ATCC 14266]
          Length = 851

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/893 (38%), Positives = 514/893 (57%), Gaps = 93/893 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +   I  + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ 
Sbjct: 15  SDYDRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRG 74

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RY
Sbjct: 75  YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRY 134

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TECRL   A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG  GIAVGMATNI
Sbjct: 135 TECRLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNI 194

Query: 191 PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HNL E+ D    +++NPD D    L+A ME I+GPDFPT  +I+G  GIK+AY TGRG
Sbjct: 195 PPHNLRELADAIYWLLENPDADDATALEACMEHIKGPDFPTAGLIVGTQGIKDAYTTGRG 254

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
           SI +RGV+ IE+    R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR
Sbjct: 255 SIRMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDR 313

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA +
Sbjct: 314 VGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQ 373

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + ARR L+       
Sbjct: 374 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLI------- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + EVQ  AIL ++L RL  L R  I +EL  +   I 
Sbjct: 427 -------------------DLLTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIA 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL+S  R   I++ EL  + D+    RR++I+    D+ +ED I RE++VVT++  
Sbjct: 468 DLKDILASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITST 527

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 528 GYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYE 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ + N+L     ERI  ++     E   +  Y+V AT  G V++++LSD+
Sbjct: 588 LPEASRTARGQHVANLLEFQPEERIAQVIQIQSYE---DAPYLVLATVQGRVKKSRLSDY 644

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                 G IA+ L+  D+++    C+ E+D+LL ++ GQ +RF      +R   GR++ G
Sbjct: 645 ESARSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPM-GRSTAG 703

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V                                          
Sbjct: 704 VKGMRFRGDDHLLAMTVVRDG--------------------------------------- 724

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L  +  G+GKRTS  ++ +  R G G+     +   + G L+ 
Sbjct: 725 --------------SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP--KRGKLIG 768

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              V+D+DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R
Sbjct: 769 ALAVDDDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 821



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 96/231 (41%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVI 736
           DE++++   ++  D+    + G      I  ++      +  +  + L      +  ++I
Sbjct: 406 DEVIALIRRSETVDV---ARRGLIDLLTIDEVQ------ADAILAMQLRRLAALERQKII 456

Query: 737 S-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
             +A +    AD  + +          R    +  +       S +     +   ++L  
Sbjct: 457 DELAEIEAIIADLKDILASPGRQRTIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIA 516

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQII 854
           +E  ++T++  G+ KRT    ++   R GKG+R  ++    +   +V  F V + +D I+
Sbjct: 517 RENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVCSTHDWIL 572

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902
             ++ G + R+   E+  ASR  +G  + +  +   +ER+  V +I+  E 
Sbjct: 573 FFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYED 623


>gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 812

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/898 (38%), Positives = 505/898 (56%), Gaps = 89/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++      +  + I +E++ SYL YA++VI+GRA+PD +DGLKPV RRIL+ MM++G+  
Sbjct: 2   AESSNIGKVLRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRS 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K ARI GE MGKYHPHG+AAIYDA+ RMAQD+S+R  L++GQGNFGS+DGDPPAA
Sbjct: 62  NQPYRKSARIVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL      +L D+ +DTVD+ PN+D + QEP+VL +  PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSPLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDN-PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           TNIP HNL EVVD    +ID   D++L  ++E++ GPDFPTG  I GR GI NAY TGRG
Sbjct: 182 TNIPPHNLSEVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTITGREGIINAYRTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            IV+RG   IE+    +  ++VTEIPY VNK  ++E IA  V+E  +  IADLRDESDR 
Sbjct: 242 KIVLRGRVSIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRD 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIEL+R A   ++L QLY  T LQ+ F V  +AL    P    LI +LK F+  R 
Sbjct: 302 GIRVVIELQRDADPHLVLKQLYSRTPLQTTFGVINLALVDGVPRELGLIELLKIFLDHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +VV RRT Y L KA +RAH++ GL  A+  +DE++ +I+ S + + AR  LM        
Sbjct: 362 DVVRRRTNYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLM-------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  +E+Q +AIL++RL RLT L R  +  EL  L  +I+ 
Sbjct: 414 ------------------DNFGFTELQAQAILDMRLQRLTNLERSKLEEELRHLLKDIEM 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              IL + S L  ++K+EL  +K +    R+T IV+ L+++ D++ I  ED+VV +S  G
Sbjct: 456 YHSILENPSVLDSVVKEELTELKRQYGDARKTEIVDELVEVADDELIPEEDIVVVLSKDG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y++R  L  Y  Q RGGKG  G+  +D++        + H   L F+S G V+  K + L
Sbjct: 516 YLRRASLGDYHLQGRGGKGIKGLKQKDDEVEMFAATTTHHDIFL-FTSKGRVFAIKGYLL 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +GK + +  +L + ER+  I    ++++     +V FAT+ G  +R  +S+  
Sbjct: 575 PE-PKNGKGKHVSSFFTLEENERVVAI----KEDTMHGARFVFFATERGIAKRLDVSELA 629

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + R+G+  + LD  D I  V   + E+++L  +  GQ +R      R   GR + GVR 
Sbjct: 630 NLTRAGRRVITLDDGDFIARVRFTSGEDELLFVSAKGQALRTSEQEFRPM-GRQARGVRA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L++ D ++    +    A                                        
Sbjct: 689 IRLSESDVLVGCEPLQEGMA---------------------------------------- 708

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        IL +SEKG GKRTS  +F + +R G G+RA  +S     G+LV  + 
Sbjct: 709 -------------ILFISEKGVGKRTSFDEFPLHHRGGSGVRAMRLSSR--TGSLVGAWS 753

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V ++D++++V+ KG + R+ V  + + SR   G ++    + + V  +  +R+  + +
Sbjct: 754 VTEDDEVMIVTSKGRVTRIAVRNVPVLSRTATGSILVRLDQGDSVADITIVRDDAMEE 811


>gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276]
 gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s]
 gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A
 gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768]
 gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222]
 gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301]
 gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 836

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRTRI     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817

Query: 905 EAEST 909
           E E  
Sbjct: 818 ETEEN 822



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             + + +   +  G VK+V L  + + R+ G     +    ++ +    I +    V+ F
Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           + LG   +    ++      ARG   +++ +                +    +  V+   
Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719

Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +G  +R+ + DF + NR       I +   + D +L   + T  + ILL +  GQ +R 
Sbjct: 720 DNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +  +RV  GR + GVR ++L +GD +++M  +       +        + + +  I 
Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835


>gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074]
          Length = 836

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/905 (38%), Positives = 526/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+I EL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRTRI     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817

Query: 905 EAEST 909
           E E  
Sbjct: 818 ETEEN 822



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             + + +   +  G VK+V L  + + R+ G     +    ++ +    I +    V+ F
Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           + LG   +    ++      ARG   +++ +                +    +  V+   
Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719

Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +G  +R+ + DF + NR       I +   + D +L   + T  + ILL +  GQ +R 
Sbjct: 720 DNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +  +RV  GR + GVR ++L +GD +++M  +       +        + + +  I 
Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835


>gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 832

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/905 (39%), Positives = 532/905 (58%), Gaps = 88/905 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  I ++E E  GI + ++   M++S+L Y+++VI+ RA+PD+RDGLKPV+RRIL+ M +
Sbjct: 11  EPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYAMNK 70

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G       VK A+I GEVMG YHPHG+++IYDA+  +AQ W +R  L+EGQGNFGS+DG
Sbjct: 71  NGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGSMDG 130

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+ K    LL D+ K+TVDFR N+DG+ +EPVVL +  PN+L+NG  GI
Sbjct: 131 DEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQMGI 190

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+D  VA IDNP+I LD L+  I+GPDFPTGA + G   ++ AY 
Sbjct: 191 AVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGGAPMRQAYE 250

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ IR V+ IE+    R  I+VTE+PY ++K   ++K+ ELV  K+I  IAD RDE
Sbjct: 251 TGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIADARDE 310

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAF 361
           S R   RVV+ELK+ A    ILNQLY+ T LQ+ F  N++AL    +P+   L  IL  F
Sbjct: 311 SARGKVRVVVELKKDAYPKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKEILAEF 370

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R+ V+ RRT++ L KA++RAH+L GL IA+ ++DEV++ IR S +   A + LM+R 
Sbjct: 371 IKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYD--DADKRLMER- 427

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+Q  AIL ++L RL GL RD I +EL  L 
Sbjct: 428 -------------------------FGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLH 462

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540
             IK+   IL+S   +L ++K ELL++KD+    RR++I+        DE+ I  E+ V+
Sbjct: 463 ELIKKLEAILASEQEILNVVKTELLAMKDKYGDERRSKIINHELGKFSDEELIPEEESVI 522

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   Y+KR  +S YR Q RGGKG+ G+  ++ED +  +   STH  +LFF+++G +++
Sbjct: 523 LLTSENYIKRTLVSDYRRQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFR 582

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P  S  A+G A +N+L L   E+IT I+    ++++ +  Y+  AT+ G V++ 
Sbjct: 583 LKAYEVPAASLSAKGVAAVNLLQLQPEEKITAII--KHEKNANDKGYLFMATQKGTVKKT 640

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            + D+  +  +G IA+KLD  DE+  ++  + +ND++++T  GQ +RF     R   GR+
Sbjct: 641 PVKDYANVRTNGLIAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPM-GRS 699

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRG+ L   D V+ M IV   D                                   
Sbjct: 700 ARGVRGVRLRPNDSVVGMDIVTGDD----------------------------------- 724

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +L VSEKGFGKRT   +F    R G GI+A  V+   + G 
Sbjct: 725 -----------------QTLLVVSEKGFGKRTKVSNFPSHKRGGVGIKAAVVTA--KTGP 765

Query: 841 LVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +++V  ++    + +LVS  G  IR+ +++I++  R T+GV I   +  + V S+  + +
Sbjct: 766 IISVQTIDPEVTEALLVSQNGQTIRLSLSDIKLLGRTTQGVTIMRLSDGDAVSSIGLMAD 825

Query: 900 SEIVD 904
               +
Sbjct: 826 RPQDE 830


>gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
 gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 830

 Score =  800 bits (2066), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/909 (38%), Positives = 529/909 (58%), Gaps = 95/909 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRILF M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A  L++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+  PD  ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGSEGIRSTYYTGRGKIKL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   HIE+ +    E I++TE+PY VNK+ ++E+IA+LV +K +  I D+RDESD+ G R
Sbjct: 243 RARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S+++++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R EV+
Sbjct: 303 VVLELKKGESSEIVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ LD++VR IR S + E A+ +L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q+ AILELRL +LTGL  + I+ E + L  +I     
Sbjct: 413 ----------------NFGFTEQQSVAILELRLYQLTGLESEKIQKEYDELINKIAYYKR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II+ EL  ++    TPRRT I        + ED I  E +++T+S   YV
Sbjct: 457 VLADEGLVKDIIRNELQDLQKLHKTPRRTTIEFDADDVRDIEDIITNEPVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPIKVFREQKRGGHGVSGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATK G V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNIKNFE---NAGFLFLATKQGVVKKVSLDAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +V   ++E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V++  IV                                           
Sbjct: 693 GVSLKNEKDRVVACQIVKDD---------------------------------------- 712

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                        Q +L V + GFGKR+   DFR +NR G G+R+  +++ N  G ++  
Sbjct: 713 -------------QSVLVVCDNGFGKRSQVEDFRETNRGGVGVRSILINERN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI----RES 900
             V D+D I+L+S +G  IR+ + ++R+  R+T+GV +      + +V++E++     E+
Sbjct: 758 ISVTDHDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVLVKDGDTLVAMEKLSLNGEET 817

Query: 901 EIVDEAEST 909
               E EST
Sbjct: 818 LSGIEEEST 826


>gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda]
          Length = 878

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 374/850 (44%), Positives = 532/850 (62%), Gaps = 22/850 (2%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A    +LN LY  T +Q  F +NMVAL+  +P+   L   L+AFV  R EVV RRT
Sbjct: 307 VKRDAVGRGVLNNLYTQTQMQVSFGINMVALHQGQPKLLDLKECLEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+ N+D ++ +IR +P P  A+  L+ ++W   ++  ++  
Sbjct: 367 IFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAMLAR 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  +L+E Q +AIL+LRL +LTGL  + + +E  +L  +I 
Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++ED +  L + +TH ++L F S G +Y  K+++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFSRGRMYWMKMYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L   S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   +G IA+  +  DE++ V+     ++++L +  G+ VRF   A+R   GR + GVR
Sbjct: 664 SRPRAAGIIAVNPNYGDELIGVDLTDGNDEVMLFSVAGKVVRFKEDAVRAM-GRTATGVR 722

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA  D+V+S+ IV H +              +        +     + +    E N 
Sbjct: 723 GIKLAGEDRVVSL-IVPHGEGAILTVTQNGYGKRSGVAEYPTKSRATQGVISIKVTERNG 781

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-- 843
           S     +++  +Q I+ +++ G   RT   +  I   + +G+     ++      +V   
Sbjct: 782 SVVGAVQVEDCDQ-IMMITDAGTLVRTRVSEVSIVGCNTQGVILIRTAEDE---HVVGLQ 837

Query: 844 --VFPVNDND 851
             V PV+D D
Sbjct: 838 RVVEPVDDED 847



 Score = 65.2 bits (157), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 54/411 (13%), Positives = 138/411 (33%), Gaps = 36/411 (8%)

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL++ +     +  L   + + + ++ +IR           + ++  +A   +   + 
Sbjct: 472 EKLLDEYKALLEQIAALIFILQSPERLMEVIREEL------IAIREQFGDARRTEITANT 525

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKECLDILS 492
            D +   +     + ++      +    L+      R    ++       ++ + L + +
Sbjct: 526 ADINIEDLIEQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVAN 585

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV---------- 542
           +   +L    +  +           +R   G   +        E +   +          
Sbjct: 586 THDTILCFFSRGRMYWMKMYQLAGASRGARGRPIINLLPLEADERITAILPVREYAEGVN 645

Query: 543 ----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
               +  G VK+  L+ +   R  G         DE    DL     +  V+ FS  G V
Sbjct: 646 VFMATASGTVKKTALTEFSRPRAAGIIAVNPNYGDELIGVDL--TDGNDEVMLFSVAGKV 703

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            + K   +      A G   +  + L   +R+ +++             ++  T++G  +
Sbjct: 704 VRFKEDAVRAMGRTATG---VRGIKLAGEDRVVSLI------VPHGEGAILTVTQNGYGK 754

Query: 659 RNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R+ ++++   +R+ +  + +        ++        + I++ T  G  VR  +S +  
Sbjct: 755 RSGVAEYPTKSRATQGVISIKVTERNGSVVGAVQVEDCDQIMMITDAGTLVRTRVSEV-S 813

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             G N+ GV  I  A+ + V+ +  V+    D D              ++ 
Sbjct: 814 IVGCNTQGVILIRTAEDEHVVGLQRVVEPVDDEDLDSIDGSAAEGDDEIVP 864


>gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
          Length = 911

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/908 (37%), Positives = 506/908 (55%), Gaps = 110/908 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC
Sbjct: 30  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 89

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR
Sbjct: 90  SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 149

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 150 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 209

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV  G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 210 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 269

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 270 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 328

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   VILN LY++T LQ  F  NM+AL    P   +L   ++ +++ + EVV
Sbjct: 329 LVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVV 388

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKYL  +A +R H+L G   A+  ++EV+ +IR SP+ + AR  LM           
Sbjct: 389 DRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------- 437

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I +  D
Sbjct: 438 ---------------DLLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYND 482

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R   I+  E+  + D+    RRTRI+    +M  ED I  E++VVTV+H GY+K
Sbjct: 483 ILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIK 542

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P G
Sbjct: 543 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEG 602

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L L   E+I  ++   + +      Y+V AT+ G +++ +L+++    
Sbjct: 603 SRDSKGQHVANLLQLGPDEKIQQVLSIHDYD---EAKYLVLATRSGKIKKTRLNEYDSTR 659

Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
           + G IA++L                   DE++    C  E++I++ ++ G  V+F     
Sbjct: 660 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 719

Query: 713 -IRVFAGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +R   GR + GV+ +        D ++SM +V                           
Sbjct: 720 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVVP-------------------------- 752

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       +  ++ V+ +GF KRT+  ++R+  R+G G++
Sbjct: 753 -------------------------AESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVK 787

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++ +    G+LV    V+++DQI+ +   G +IR  V EI+   R T+GV +    K 
Sbjct: 788 AINLVEG--RGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 845

Query: 889 ERVVSVER 896
           + ++S+ R
Sbjct: 846 DEIISIAR 853



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++   ADY++ +   +   A       +  +       + +     E   ++L  +E  +
Sbjct: 473 LMRKIADYNDILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVV 532

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +TV+  G+ KRT + ++R  +R GKGI+ T + + + +      F  + ++ ++  +++G
Sbjct: 533 VTVTHSGYIKRTKADEYRAQHRGGKGIKGTRLREDDVVDH---FFLTSTHNWLLFFTNEG 589

Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902
            + R+   E+   SR +KG  + +      DE++  V  I + + 
Sbjct: 590 RVYRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHDYDE 634


>gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
 gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267]
          Length = 874

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/927 (39%), Positives = 539/927 (58%), Gaps = 137/927 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E++++    + + I +V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENLLN----QNQDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y+K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+
Sbjct: 57  NNLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+      +L D+ KDTVDF PNYD    EP VL +R PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E++DG + V++N +  L+ +ME I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIEK   +++ IVV E+PYQ NKA ++E+IAELV+EK+I  I+++R
Sbjct: 237 YRTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK 
Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  +AR  L+ +
Sbjct: 356 FLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVAK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q  AIL++RL++LTGL R+ +  EL  L
Sbjct: 416 --------------------------FGLSELQANAILDMRLSKLTGLEREKLEAELAEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK ELL +K++   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 MAEIARLDEILKSETLLEKLIKDELLEIKNKFKVPRITEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  +      +  + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFA---QSKSLAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695
            LS+F  I   G  A+ LD  DE+++      E +                         
Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEGEEEPINLIGELGVETEINEIEAIEAQID 686

Query: 696 ----------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-G 732
                                 + + TK G C++F +S +R   GR + GV GI   + G
Sbjct: 687 EENSNDGDKNGERTESDDSEKMLFIVTKKGMCLKFKLSKVRQM-GRTARGVTGIKFKEAG 745

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+  A++ +                                                 
Sbjct: 746 DEVVGAAVIENNA----------------------------------------------- 758

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                Q +L+VS+KG GKRT++ ++R++NR GKG+    ++  N  G L+ V  V++   
Sbjct: 759 -----QEVLSVSQKGIGKRTTADEYRLTNRGGKGVICMKLT--NRTGDLIGVVMVDEEQD 811

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG 879
           ++ ++  G +IRV +  IR A R T G
Sbjct: 812 LMALTSSGKMIRVDMQSIRKAGRNTSG 838


>gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
 gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134]
          Length = 848

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/888 (37%), Positives = 524/888 (59%), Gaps = 81/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++G+  +  +
Sbjct: 3   EGEKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD + N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A IDN D+ +D LME ++ PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +  E+    RE I+VTEIPYQVNKA M++K A+++ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKAEFEEVK-GRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +KR A  +++LN+L++YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YVIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGRPEMLNLKDMIHHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA  RAH+L GL IA  N+DEV+ IIR S N + AR+ L++R           
Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R+E   +   I++  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + II++EL  +KD+    RR+ I     D+   D I  + +V+T+S+ GY+KR 
Sbjct: 456 AKKERRMSIIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G      R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKTQNRGGVGTKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++G+A+ N++++ Q + +   +   +                                 
Sbjct: 576 TSKGRAIQNLINIEQDDEVKAFVCTGD--------------------------------- 602

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLA 730
                 L   D I         + I++ TK GQ  +  +    R      + G+  I++ 
Sbjct: 603 ------LKDEDYI-------NNHYIIMATKKGQVKKTALEQYSRPR----TNGINAITIK 645

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+++S   +   ++     +   K +  +           + ++  +           
Sbjct: 646 DNDELLSAK-LTTGESQVMLALKSGKAIRFEESKTRPMGRNASGVRGITLANDEDEVVGM 704

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             +   E  IL VSEKG+GKR+S  D+RI+NR GKG++   V++  + G LV++  V D 
Sbjct: 705 VSVNDTESNILVVSEKGYGKRSSLEDYRITNRGGKGVKTISVTE--KTGELVSIKNVTDA 762

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           D +++++  G  IR+ V  +R+  RAT+GV + +   ++ + +V +++
Sbjct: 763 DDLMIINKSGIAIRMEVASLRVMGRATQGVRLINLKGNDSIAAVAKVK 810



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 87/210 (41%), Gaps = 22/210 (10%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760
           RF +S I+      +  +  + L      + D++ S    ++    D  + +   +   +
Sbjct: 410 RFKLSEIQ------AKAIVEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMS 463

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
             R    + ++    +  S +E    +    +L   ++ ++T+S  G+ KRTS  +++  
Sbjct: 464 IIREELQEIKDKYGDERRSIIEYAGGDVSITDLIPDKKVVITISNAGYIKRTSLTEYKTQ 523

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKG 879
           NR G G +A+     + +  L     V  N Q +L  + KG    + V EI   S+ +KG
Sbjct: 524 NRGGVGTKASTTRNEDFLEHL----FVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTSKG 579

Query: 880 ---VVIFSTAKDERVVSVERIRESEIVDEA 906
                + +  +D+ V     +   ++ DE 
Sbjct: 580 RAIQNLINIEQDDEVK--AFVCTGDLKDED 607


>gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20]
          Length = 826

 Score =  800 bits (2065), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/895 (40%), Positives = 548/895 (61%), Gaps = 95/895 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + RRT I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRRTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL+  E+I   +   +     +   + F TK G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLDPDEKIMATLSTKDFS---DERSLAFFTKKGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F   N +G  A+ LD  DE++S +   +    +L+ + LG  ++F +  +R   GR
Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGLFIKFSLEDVREI-GR 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           ++ GV GI L + D V+   ++                                      
Sbjct: 685 STRGVIGIKLNENDFVVGAVVINDDSNK-------------------------------- 712

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKG+    +++  + G
Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQ--KTG 750

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
            LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIKDIKETIGRNTSGVKLIDTA--DKVV 803



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 84/524 (16%), Positives = 171/524 (32%), Gaps = 66/524 (12%)

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
            +   A       +   II     P    +  +    +    +  I+ I +       +G
Sbjct: 243 RVKVRAKVHVEKTKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG 302

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E++  A+ E+ L  L  L   +    +  L I  KE           L +  ++ 
Sbjct: 303 IRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKT 362

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSV-YRAQRRG 562
           + ++  +    + +    +L+         +++V  +  S      +  L   +      
Sbjct: 363 IIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQ 422

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
            K    + ++    +    I   + ++L   S      +   RL         +      
Sbjct: 423 SKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTELLEVKEQFS 482

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDS 680
           S  + E          ++   N   VV  +  G V+R  L  + + NR   GK++     
Sbjct: 483 SQRRTEIQEVYENIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYE 542

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVIS 737
            D I +       + +L  T  GQ  R  +  I   A R ++G   V  ISL   +++  
Sbjct: 543 DDFIENFFVANTHDILLFITNKGQLYRLKVYKI-PEASRIAMGKAIVNLISLDPDEKI-- 599

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA +   D                                                   E
Sbjct: 600 MATLSTKD------------------------------------------------FSDE 611

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILV 856
           + +   ++KG  KRT+  +F  +     G+RA  + +      LV+   V+ N   +++ 
Sbjct: 612 RSLAFFTKKGVVKRTNLSEFDSNY---NGMRAIVLDEG---DELVSAKIVDKNAKHLLIA 665

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           S  G  I+  + ++R   R+T+GV+     +++ VV    I + 
Sbjct: 666 SYLGLFIKFSLEDVREIGRSTRGVIGIKLNENDFVVGAVVINDD 709


>gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
 gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544]
          Length = 808

 Score =  799 bits (2064), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/837 (42%), Positives = 513/837 (61%), Gaps = 36/837 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y 
Sbjct: 5   QGKIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGDP AA RYTE
Sbjct: 65  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF PNYD S +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 125 VRMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV+DG + +ID+PD  +D LM++I+GPDFPT  +ILG+ GI+ AY TGRG I +R 
Sbjct: 185 HNMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLILGQDGIRQAYTTGRGVIKMRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE  S  + +I+VTE+PYQVNKA ++EKIA+LVR+K+I  I  L DESDR G R+VI
Sbjct: 245 NARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +L+R A+A+VILNQLY++T LQ  F V M+AL   KP+   L  +L  ++A +E+V+ RR
Sbjct: 305 DLRRDANANVILNQLYKHTQLQDSFGVIMLALVDGKPKILNLKEVLHYYIAHQEDVITRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  L+              
Sbjct: 365 TRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALIS------------- 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 412 -------------GFKLSEKQAQAILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILA 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
              R+L IIK EL +VK +    RRTR+     +++ ED I  ED+V+T++H  Y+KR+ 
Sbjct: 459 DEGRILAIIKDELKAVKAKFGDARRTRLTVDTSEIDVEDLIAEEDVVITLTHNNYIKRMA 518

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR Q RGGKG  G+  +++DFV +L I +TH ++LFF++ G VY  K + +   S  
Sbjct: 519 LDTYRRQNRGGKGIKGMPTKEKDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRA 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L L + E+IT ++          + Y+  ATK G V++  L +F  +++ G
Sbjct: 579 AKGTAIINLLQLEKDEKITAVIQVKGFN---PDAYLFMATKKGIVKKTSLVEFKNLHKGG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    E D++L TK G  + F    +R   GR + GV+GISL  G
Sbjct: 636 LNAINLDDDDELIGVKFTDGERDMILGTKWGMAIVFGEDDVRAM-GRAARGVKGISLNDG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI M  +                 +      + +      +  +  V     +     
Sbjct: 695 DEVIGMDTLSPNAEVLTVTAEGYGKRTETSEYRAQNRGGKGLI--NLKVTEKTGDVIGLR 752

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           +   +Q ++ ++ +G   RT+  D  + +R+ +G++     + +    +VA   V D
Sbjct: 753 VVHPDQELMLITTEGIVIRTNISDISVISRNTQGVKLMSTGEND----IVASMAVMD 805



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 9/218 (4%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +E+ ++  T      R  +   R    R   G++G+   + D V ++ I        
Sbjct: 498 LIAEEDVVITLTHNNYIKRMALDTYR-RQNRGGKGIKGMPTKEKDFVENLLITTTHHTIL 556

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y                           +  I+     +    + ++   ++
Sbjct: 557 FFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVKGFNPDAYLFMATK 616

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG  K+TS  +F+  ++   G+ A ++   ++   L+ V   +    +IL +  G  I  
Sbjct: 617 KGIVKKTSLVEFKNLHKG--GLNAINL---DDDDELIGVKFTDGERDMILGTKWGMAIVF 671

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             +++R   RA +GV   S    + V+ ++ +  +  V
Sbjct: 672 GEDDVRAMGRAARGVKGISLNDGDEVIGMDTLSPNAEV 709


>gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 882

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/930 (38%), Positives = 514/930 (55%), Gaps = 107/930 (11%)

Query: 1   MTEHIISSDEEEEK-------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +     D   E         +  V +  EMQ SYL YA++VI+GRA+PD RDGLKPVH
Sbjct: 1   MADETHGEDHTPEDAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G   ++ Y KC+R+ G+VMG+YHPHG++AIYDAL R+ Q W++R  LI+G
Sbjct: 61  RRVLYAMYDGGYRPDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   D  AA RYTEC++   +  ++ D+ +DTVDF+ NYDG  QEPV L AR+PN
Sbjct: 121 QGNFGSAGNDGAAAPRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G   ++ +PD   D  +E    II+GPDFP GA
Sbjct: 181 LLVNGSAGIAVGMATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V  +E+    R  +VVTE+PY VN   +  KIA  V+
Sbjct: 241 TILGRKGIEDAYRTGRGSITQRAVVEVEEIQ-GRTCLVVTELPYMVNPDTLANKIASYVK 299

Query: 290 EKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IADLRDES  R G R+VI LKR A A V+LN LY++T LQ  FS NM+AL    
Sbjct: 300 DGKVAGIADLRDESSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFSANMLALVDNV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++   L+ +V  + +V+VRRT++ L KA +RAH+L G   A++ LDEV+ +IR SP
Sbjct: 360 PRTLSIDAFLRLWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + AR  LM+                           + + E+Q  AIL+L+L RL  L
Sbjct: 420 SSDEARTGLME--------------------------LLDVDEIQANAILDLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDM 527
            R  I  E   +   IK+  +IL++ +R   I+ +EL +V       RRT+I      D+
Sbjct: 454 ERLKIEEEAQKIEELIKDYNEILATPARQREIVSEELDAVVQRYGDDRRTKILAGFDGDV 513

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E++VVT++  GY KR   ++YRAQ RGGKG +G  +R +D V   F+ STH 
Sbjct: 514 SMEDLIPEEEVVVTITRGGYAKRTQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHN 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++ G VY+ K + LP G   A+G+ + N+L+L   E I  ++  P+ +      Y
Sbjct: 574 WLLFFTNTGRVYRAKAYELPEGMRDAKGQHVANLLALQPDEEIAEVLSIPDYD---AAQY 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKL 702
           ++ ATK G V++ +LS++      G IA+ L        DE++S      E+ +LL ++ 
Sbjct: 631 LMLATKSGLVKKTRLSEYDSNRTGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRK 690

Query: 703 GQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           G  +RF      IR   GR + GV G+     D +++M +V                   
Sbjct: 691 GMSIRFAADDSTIRP-TGRATSGVTGMKFKGEDTLLTMDVV------------------- 730

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                                 ++  V+E GF KRT   ++R+ 
Sbjct: 731 ----------------------------------TPGTYVFVVTEAGFAKRTPVEEYRLQ 756

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R G GI+   +++  + G LV    V++ D + +V + G ++R  ++E+    R T GV
Sbjct: 757 GRGGFGIKVAKITE--QRGDLVGGLIVSEGDDVFVVMEMGKVVRSKIDEVPAKGRNTMGV 814

Query: 881 VIFSTAKDERVVSVERIRESEIV-DEAEST 909
           V     K +R+++V R  E+E + DE + +
Sbjct: 815 VFAKPGKKDRIIAVTRGPEAEDILDEVDES 844



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 16/252 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFSSLGFVY 599
           +  G VK+  LS Y + R GG     +    +    +L           +L  S  G   
Sbjct: 635 TKSGLVKKTRLSEYDSNRTGGVIAINLREMADGKSDELVSARLVDAEDHLLLVSRKGMSI 694

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +       I  P  R  + +  +     + + T+             YV   T+ G  +R
Sbjct: 695 RFAADDSTI-RPTGRATSGVTGMKFKGEDTLLTMDVVT------PGTYVFVVTEAGFAKR 747

Query: 660 NKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             + ++ ++   G   +K+    E    ++     ++ +D+ +  ++G+ VR  I  +  
Sbjct: 748 TPVEEY-RLQGRGGFGIKVAKITEQRGDLVGGLIVSEGDDVFVVMEMGKVVRSKIDEV-P 805

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GRN++GV      K D++I++     A+   DE        +          +   + 
Sbjct: 806 AKGRNTMGVVFAKPGKKDRIIAVTRGPEAEDILDEVDESTVSDAELDGESVDSDQSTETQ 865

Query: 776 KNDSSVEGNISE 787
            + S+   +  E
Sbjct: 866 DDQSAETQSADE 877


>gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
 gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter
           upsaliensis JV21]
          Length = 852

 Score =  799 bits (2063), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/904 (39%), Positives = 536/904 (59%), Gaps = 113/904 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++     + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MENLFNKDSDTQIIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  
Sbjct: 61  GSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E+VDG + ++DN +  L+ LM+ I+GPDFPT  +I G+ GI +AY TGR
Sbjct: 181 MATNIPPHSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIYGKKGIIDAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I IR  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  IA++RDESDR
Sbjct: 241 GRIKIRAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R
Sbjct: 300 EGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT Y L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +     
Sbjct: 360 KTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I++EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDEILKSEALLEDLIREELKEIRAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  +      +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTSDFA---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT---------------------------QENDILL 698
             I   G  A+ LD  DE+++                                    +  
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVERDLIELSQASQDENLSEEASEENLENVGGKMLFA 690

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKH 757
            TK G C++FP++ +R   GR S GV  I   +  D+++   ++ +              
Sbjct: 691 VTKRGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEN-------------- 735

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                  EQ +L+VS KG GKRT++ ++
Sbjct: 736 --------------------------------------DEQEVLSVSAKGIGKRTNAGEY 757

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+ +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV ++ IR A R T
Sbjct: 758 RLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNT 815

Query: 878 KGVV 881
            GV+
Sbjct: 816 SGVI 819


>gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1]
 gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1]
          Length = 812

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/891 (39%), Positives = 515/891 (57%), Gaps = 85/891 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI  V IT E++ +++ YA+NVI+ RA+PD+RDG+KPV RRI++ M+Q G+  N K+ K 
Sbjct: 3   GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A + GEVM +YHPHG+++IYDA+ R+ Q W++R  L++ QGNFGS+DGD  AA RYTE R
Sbjct: 63  ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K A  +L DL K+TVD +PNYD +  EP VL +  PN+L+NG  GIAVGMATNIP HN
Sbjct: 123 MTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+ +G +A+IDNP I LD +M  ++GPDFPTG  I  + GI+ AYATG   + +RG +
Sbjct: 183 LTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRIA-KVGIREAYATGHAGLKVRGKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIE 313
            IE+    R QI+++EIPYQ+NK  +L+ I+ + +  +I DI  LRDESDR +  R+VIE
Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301

Query: 314 LKRGA--SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           LKR A     ++LNQLY+YT LQS ++V  +++   +P    LI  ++ F+  R +VV R
Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTVMNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KA++RAHVL GL  A+ ++DEV+ +IR S     AR  LM R           
Sbjct: 362 RTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AIL++RL RL GL R+ ++ E + L   I     IL
Sbjct: 411 ---------------FGLSEIQAQAILDMRLQRLVGLEREKLQGEYDELQKTITRLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                L   IK+E+  ++D     RR+ I E   D+  ED I  EDMV+T++  GYVKR 
Sbjct: 456 GDEKLLWREIKKEIRDIRDRYGDARRSVITELEEDINKEDLIAVEDMVITMTRAGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ YR Q+RGG+G SG  +R+ED  T +F+ STH  +LFF+  G V+ EK++ LP    
Sbjct: 516 NLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  + N+L          I               +FATK G ++++ ++D+  I  +
Sbjct: 576 DAKGTHIRNLLP--GLRDDENIASVLSVSGFDQPGSFIFATKSGVIKKSLITDYANITSA 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ V+     +D++L TK GQ +RF  + +R   GR + GV GI L +
Sbjct: 634 GLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRFEATLVRD-TGRATQGVIGIRLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+SMA+V   D                                              
Sbjct: 693 GDEVVSMALVPGND---------------------------------------------- 706

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
               +E  +L +SE G GKRT   D+    R G G+   DV+  ++ G LV +  V  N+
Sbjct: 707 ----EEGELLAISECGLGKRTKVSDYPSKGRGGLGVITLDVT--DKTGKLVTLAHVAGNE 760

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++++++KGT+IR  V E+R+  R  +GV + +    +RV+    IR+ + 
Sbjct: 761 ELMVLTEKGTVIRTRVEEVRVTGRNAQGVKVINIGDKDRVIDAFPIRKEDE 811



 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 64/265 (24%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQC 705
           V+  T+ G V+R  L+ + +  R G+ +    L   D    V   +  + +L  T  G+ 
Sbjct: 503 VITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTHDYLLFFTDQGRV 562

Query: 706 VRFPISAIRVFAGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSA 760
               I  +   AGR++ G   I      L   + + S+  V   D               
Sbjct: 563 FHEKIYDL-PEAGRDAKGTH-IRNLLPGLRDDENIASVLSVSGFD--------------- 605

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                                 FI   ++ G  K++   D+  +
Sbjct: 606 ----------------------------------QPGSFI-FATKSGVIKKSLITDY--A 628

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           N +  G+ A ++        L+ V    D D ++L +  G  +R     +R   RAT+GV
Sbjct: 629 NITSAGLIAINLQPG---DELIGVDIQQDGDDVVLATKNGQAMRFEATLVRDTGRATQGV 685

Query: 881 VIFSTAKDERVVSVERIRESEIVDE 905
           +     + + VVS+  +  ++   E
Sbjct: 686 IGIRLREGDEVVSMALVPGNDEEGE 710


>gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51]
 gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51]
          Length = 770

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/760 (47%), Positives = 503/760 (66%), Gaps = 37/760 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI 
Sbjct: 426 AGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHE 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  F
Sbjct: 606 LPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------- 712
             +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S              
Sbjct: 663 ANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 713 ------------IRVFAGRNSVGVRGISLAKGDQVISMAI 740
                       +R   GR + GVRG+ LA GDQV+S+ +
Sbjct: 723 DENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSLIV 761



 Score = 82.9 bits (203), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 97/285 (34%), Gaps = 87/285 (30%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   LSD+    R   GK A K+   D I  +      ++ILL +  G+ 
Sbjct: 539 VVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKT 598

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            R  +  +   A R + G   V  + L + +++ ++  V                     
Sbjct: 599 YRMKVYQL-PLASRTARGKPIVNLLPLEENERITAILPVTE------------------- 638

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                            +++FI   +  G  K+TS   F  +N 
Sbjct: 639 -------------------------------FSEDKFIFMATGDGTVKKTSLDQF--ANV 665

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP-------VNE------ 869
              G+ A ++       +L+ V   +   +I+L S  G ++R         V+E      
Sbjct: 666 RANGLIALNLRD---EDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVL 722

Query: 870 ------------IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                       +R   R   GV     A  ++VVS+  + ++E+
Sbjct: 723 DENGQPEIKFKGVRPMGRTAAGVRGMKLADGDQVVSL-IVPKTEV 766



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A     +   + +    R          S    + +     +   +EL  +E  +
Sbjct: 480 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 539

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  AT + + + I  L      N +D I+L S +G
Sbjct: 540 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERL---LVANTHDNILLFSTRG 596

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
              R+ V ++ +ASR  +G   V +    ++ER+ ++  + E    
Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642


>gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
 gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470]
          Length = 826

 Score =  799 bits (2062), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/895 (40%), Positives = 546/895 (61%), Gaps = 95/895 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +++I+    E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MQDNLIN----ETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+
Sbjct: 57  HELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  
Sbjct: 117 DGDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGAN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP H + E++D  V V++NP+  LD ++E ++GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R   H+EKT  ++E IV+ E+P+Q NKA ++E+I++L REK+I  I+++R
Sbjct: 237 YKTGRGRVKVRAKVHVEKTK-NKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A ++++LN LY+ T++++ FS+ ++A+   +P+ FTL+ +L+ 
Sbjct: 296 DESDREGIRVVIELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ +++RRT + L KA+ RAH+L G  IA+ N+DE+VR+I+ S +PE A+  LM+R
Sbjct: 356 FLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALMER 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q++AILE+RL RLTGL RD I+ E  +L
Sbjct: 416 --------------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I +   IL S  RL  ++K ELL VK++  + R T I E   +++ ED I  E MVV
Sbjct: 450 LELISDLNGILKSEDRLNEVVKTELLEVKEQFSSQRCTEIQEVYENIDIEDLIANEPMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           ++S+ GYVKRV L  Y  Q RGGKG+      ++DF+ + F+ +TH  +LF ++ G +Y+
Sbjct: 510 SMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYR 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P  S  A GKA++N++SL   E+I   +   +     +   + F TK G V+R 
Sbjct: 570 LKVYKIPEASRIAMGKAIVNLISLAPDEKIMATLSTKDFS---DERSLAFFTKKGVVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGR 719
            LS+F   N +G  A+ LD  DE++S +   +    +L+ + LG  ++F +  +R   GR
Sbjct: 627 NLSEFDS-NYNGMRAIVLDEGDELVSAKIVDKNAKHLLIASYLGIFIKFSLEDVREI-GR 684

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI L + D V+   ++                                      
Sbjct: 685 TTRGVRGIRLNENDFVVGAVVISDDSNK-------------------------------- 712

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               +L+VSE G GK+T +  +R  +R GKGI    +++  + G
Sbjct: 713 --------------------LLSVSENGLGKQTLAEAYREQSRGGKGIIGMKLTQ--KTG 750

Query: 840 ALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVV 892
            LV+V  V+D +  +++++    +IRV + +I+    R T GV +  TA  ++VV
Sbjct: 751 NLVSVISVDDENLDLMILTASAKMIRVSIQDIKETIGRNTSGVKLIDTA--DKVV 803



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/272 (20%), Positives = 97/272 (35%), Gaps = 63/272 (23%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
               ++   N   VV  +  G V+R  L  + + NR   GK++      D I +      
Sbjct: 495 NIDIEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGNTYEDDFIENFFVANT 554

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD 749
            + +L  T  GQ  R  +  I   A R ++G   V  ISLA  +++  MA +   D    
Sbjct: 555 HDILLFITNKGQLYRLKVYKI-PEASRIAMGKAIVNLISLAPDEKI--MATLSTKD---- 607

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                          E+ +   ++KG  
Sbjct: 608 --------------------------------------------FSDERSLAFFTKKGVV 623

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVN 868
           KRT+  +F  +     G+RA  + +      LV+   V+ N   +++ S  G  I+  + 
Sbjct: 624 KRTNLSEFDSNY---NGMRAIVLDEG---DELVSAKIVDKNAKHLLIASYLGIFIKFSLE 677

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++R   R T+GV      +++ VV    I + 
Sbjct: 678 DVREIGRTTRGVRGIRLNENDFVVGAVVISDD 709


>gi|149177839|ref|ZP_01856438.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
 gi|148843329|gb|EDL57693.1| DNA gyrase subunit A [Planctomyces maris DSM 8797]
          Length = 919

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/917 (37%), Positives = 524/917 (57%), Gaps = 28/917 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M       +   +K I  + I DEM++SYLTYA++VI+ RA+PD RDGLKP  RRIL  M
Sbjct: 1   MASDN-GEEPIIDKNIKYLDIQDEMRDSYLTYAMSVIISRALPDARDGLKPSQRRILVAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  +   VKCA+ISG+  G YHPHG+ +IY  L R+ QDW +R +LI+ QGNFGS+
Sbjct: 60  NDLNLGASSSRVKCAKISGDTSGNYHPHGDGSIYPTLVRLGQDWVMRNVLIDKQGNFGSL 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            G PPAA RYTE RL   A  +LDD+ ++TVDF P YD    EPVVL +++PN+LVNG  
Sbjct: 120 AGLPPAAMRYTEARLSSVAAEMLDDINRNTVDFVPTYDQRNDEPVVLPSKFPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP  NLGEV +    +IDNPD  +D +++++ GPDFPTG +I GR GI+  
Sbjct: 180 GIAVGMATSIPPQNLGEVCEAITLLIDNPDATIDDILQVMPGPDFPTGGIICGRYGIRKG 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGR +I +R  +H E      + IVVTEIPY   +  + EK+  LVR+ R+  I+ + 
Sbjct: 240 YATGRSTITLRARTHFETEKQ-SDVIVVTEIPYMETRDRIREKLETLVRDDRVKGISRIV 298

Query: 301 DESDR----QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D +DR        + I LKR A  +V+L QL++++ LQ+ FS+ ++AL G +PE  ++  
Sbjct: 299 DLTDRNVPPWKVHLQIILKRDADKEVVLAQLFKFSPLQNTFSIILLALVGNRPETLSIKE 358

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++ F+  R +V+ RRT++LL +AR R H + GL IA  ++DEV++ IR SP+   A+  
Sbjct: 359 LIQQFILHRIDVIRRRTEFLLAEARKRKHTVEGLMIAQIDIDEVIKTIRNSPSRAEAKIS 418

Query: 417 LMQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           L     +   I+  +  D   +     G      LS  Q  AI+ ++L  L  L R+ + 
Sbjct: 419 LQGLQVDGKLIERALGEDGFKEYQNEQGVHEYYSLSANQAEAIVSMQLGSLANLEREKLS 478

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCI 533
            E   L   I E L +LS    +  +I++++L ++ +    RRT I E    D+  +D I
Sbjct: 479 GEHQELLKAISEYLYLLSDEDHIRSVIREDMLLLQQKYSDKRRTDISEDELTDVNRDDLI 538

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E MVVT+S  GY+KR  L+ Y+AQ RGGKG  G    +ED +  LF+ STH+ +LF +
Sbjct: 539 TEEPMVVTLSQRGYIKRTQLNTYQAQNRGGKGIKGAKTDEEDPIQHLFVSSTHSYLLFIT 598

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY +KV+ LP+    A+G+AL+N+LSL + E ++  +   E +      ++V AT+
Sbjct: 599 NRGRVYWQKVYDLPLQGRTAKGRALVNLLSLQEDEAVSNCVAVREFD---EERFLVMATR 655

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G ++++ LS + +  + G IA+KLD  DE++     +   D+LL T  G  +RF  S  
Sbjct: 656 NGIIKKSPLSAYSRPQKGGIIAIKLDEDDELVEALIVSPGEDLLLATSDGMAIRFAQSDA 715

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GRN+ GV+GI L+K   VI M I                  +    +   + +E  
Sbjct: 716 RSM-GRNTRGVKGIKLSKSGHVIGMVIADPETCLLTVCENGYGKRTPFGFIPPAEEQEEE 774

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L+ +  +      +  +    +++     +  G         +R   R GKGIR    S
Sbjct: 775 VLEAEEEITAEPDSDSEENTDEEQE-----TRSGM-------HYRRQRRGGKGIRDIRTS 822

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             N  G  V + PV ++D++++V+  G + RV   EI    R T+GV + +   ++++VS
Sbjct: 823 ARN--GNAVDIIPVAEDDEVLMVTTSGKIQRVRGCEISQVGRNTQGVRVITLDTNDKLVS 880

Query: 894 VERIRESEIVDEAESTE 910
           + RI  +EIVDE+E+ +
Sbjct: 881 LARIP-AEIVDESENED 896


>gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 922

 Score =  798 bits (2061), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/908 (37%), Positives = 506/908 (55%), Gaps = 110/908 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S+ +  EM+ SYL YA++VI+ RA+PD+RDG+KPVHRR+++ M   G   ++ Y KC
Sbjct: 41  RIKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKC 100

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG+AAIYD L RMAQ WS+R LL++GQGNFGS   DP AA RYTECR
Sbjct: 101 SRVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECR 160

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  L+ D+ KDTVDF PNYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP HN
Sbjct: 161 MAPLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHN 220

Query: 195 LGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV  G    +D+P+   + L+     II+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 221 MREVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATILGHKGIEQAYRTGRGLITM 280

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 281 RAVVNTEEI-NGRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   VILN LY++T LQ  F  NM+AL    P   +L   ++ +++ + EVV
Sbjct: 340 LVLVLKRDAVPKVILNNLYKHTQLQQTFGANMLALVDGVPRTLSLDAFIRHWISHQLEVV 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTKYL  +A +R H+L G   A+  ++EV+ +IR SP+ + AR  LM           
Sbjct: 400 DRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLM----------- 448

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I +  D
Sbjct: 449 ---------------DLLDVDQVQADAILAMQLRRLAALERQKIIDEHEELMRKIADYND 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   R   I+  E+  + D+    RRTRI+    +M  ED I  E++VVTV+H GY+K
Sbjct: 494 ILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVVVTVTHSGYIK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     YRAQ RGGKG  G  +R++D V   F+ STH  +LFF++ G VY+ K + +P G
Sbjct: 554 RTKADEYRAQHRGGKGIKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+ + N+L L   E+I  ++   + +      Y+V AT+ G +++ +L+++    
Sbjct: 614 SRDSKGQHVANLLQLGPDEKIQQVLSIHDYD---EAKYLVLATRSGKIKKTRLNEYDSTR 670

Query: 670 RSGKIAMKLDS----------------RDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
           + G IA++L                   DE++    C  E++I++ ++ G  V+F     
Sbjct: 671 QGGLIAVRLREIEGAFRTDEEGNQVPVIDELIGAALCNDEDEIIVVSQQGMSVKFSADDE 730

Query: 713 -IRVFAGRNSVGVRGISLA---KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +R   GR + GV+ +        D ++SM +V                           
Sbjct: 731 TLRSM-GRQTAGVQAMKFRGQAGEDLLLSMDVVP-------------------------- 763

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       +  ++ V+ +GF KRT+  ++R+  R+G G++
Sbjct: 764 -------------------------AESDSDLVVVTNEGFAKRTALSEYRLQGRNGYGVK 798

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++ +    G+LV    V+++DQI+ +   G +IR  V EI+   R T+GV +    K 
Sbjct: 799 AINLVEG--RGSLVGAIVVHEDDQIMAIMKSGKVIRSDVAEIKRTGRNTQGVTLAKPDKG 856

Query: 889 ERVVSVER 896
           + ++S+ R
Sbjct: 857 DEIISIAR 864



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 76/165 (46%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++   ADY++ +   +   A       +  +       + +     E   ++L  +E  +
Sbjct: 484 LMRKIADYNDILAKPERQRAIVGDEMDEIVDKYGDDRRTRILPFSGEMNVEDLIAEENVV 543

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +TV+  G+ KRT + ++R  +R GKGI+ T + + + +      F  + ++ ++  +++G
Sbjct: 544 VTVTHSGYIKRTKADEYRAQHRGGKGIKGTRLREDDVVDH---FFLTSTHNWLLFFTNEG 600

Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902
            + R+   E+   SR +KG  + +      DE++  V  I + + 
Sbjct: 601 RVYRIKGYEVPEGSRDSKGQHVANLLQLGPDEKIQQVLSIHDYDE 645


>gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20]
          Length = 893

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/929 (37%), Positives = 512/929 (55%), Gaps = 102/929 (10%)

Query: 1   MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++ +         ++    + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MSDEVEEIIGDEGATNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G      + K +RI G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ G
Sbjct: 61  RRVLYAMYDGGYRPTASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN
Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMAT IP HNL EV  G    +++PD   + L++     I GPDFPTGA
Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR
Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    
Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G ++ +VA + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP
Sbjct: 360 PRTLSLDGFVRHWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E Q  AIL L+L RL  L
Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I+ E   L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M 
Sbjct: 454 ERLKIQEESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + +      Y+
Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYD---QADYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L        DE++S    +   D+LL ++ G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAG 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF      +R   GR + GV G+   + D +++M +V  +  D D            
Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------ 737

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +  V+E G+ KRT+  D+ +  
Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G++  ++ +    G LV     +  D+++ +   G ++R  V E+    R T+GV 
Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                  +R+++V R  E ++ +  ++ +
Sbjct: 818 FAKPDAGDRIIAVARSTERDMEEAVDAAD 846



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 96/271 (35%), Gaps = 14/271 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
           D +V  +  G VK+  LS Y + R GG     +   +E    +L       T   +L  S
Sbjct: 628 DYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVS 687

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +          P  R  + +  +   +      ++     + SW +  +   T+
Sbjct: 688 RAGQSLRFHADD-DTLRPTGRATSGVTGM---RFREDDYLLAMDVVDPSWQDADLFVVTE 743

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709
            G  +R  + D+  +   G + +K+ +  E    ++        +++L     G+ VR  
Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +    GR + GV       GD++I++A     D +           SA     +   
Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIAVARSTERDMEEAVDAAD-SAPSADSADSTDQA 860

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           + + + + D+      S      L+  E  +
Sbjct: 861 QALQAPEGDTGDSPADSVADTVALEDNESEV 891


>gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
 gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195]
          Length = 852

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/904 (39%), Positives = 536/904 (59%), Gaps = 113/904 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++     + I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MENLFNKDSDTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+DGD  
Sbjct: 61  GSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL D+ KDTVDF PNYD S QEP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E+VDG + ++DN +  L+ +M+ I+GPDFPT  +I G+ GI +AY TGR
Sbjct: 181 MATNIPPHSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIYGKKGIIDAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I IR  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  IA++RDESDR
Sbjct: 241 GRIKIRAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R
Sbjct: 300 EGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT Y L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +     
Sbjct: 360 KTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELLKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I++EL  +K + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDEILKSEALLEDLIREELKEIKAKFDVPRITQIEDDYDDIDVEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  +      +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTSDFA---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT---------------------------QENDILL 698
             I   G  A+ LD  DE+++                                    +  
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVERDLIELSQVSQDENLSEEASEENLENVGGKMLFA 690

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKH 757
            TK G C++FP++ +R   GR S GV  I   +  D+++   ++ +              
Sbjct: 691 VTKRGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIEN-------------- 735

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                  EQ +L+VS KG GKRT++ ++
Sbjct: 736 --------------------------------------DEQEVLSVSVKGIGKRTNAGEY 757

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R+ +R GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV ++ IR A R T
Sbjct: 758 RLQSRGGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVDMHSIRKAGRNT 815

Query: 878 KGVV 881
            GV+
Sbjct: 816 SGVI 819


>gi|225020898|ref|ZP_03710090.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946380|gb|EEG27589.1| hypothetical protein CORMATOL_00906 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 838

 Score =  798 bits (2060), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/893 (38%), Positives = 514/893 (57%), Gaps = 93/893 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +   I  + + +EMQ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   ++ 
Sbjct: 2   SDYDRILPIDLNEEMQTSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           YVK AR   + MG++HPHG++AIYD L R+AQDW++R  L++GQGNFGS   D PAA RY
Sbjct: 62  YVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TECRL   A  ++ D+ ++TVDF PNYDG   EP +L +R PN+L+NG  GIAVGMATNI
Sbjct: 122 TECRLTPLAMEMVRDIRENTVDFSPNYDGKTMEPDILPSRVPNLLMNGSNGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           P HNL E+ D    +++NPD D    L+A ME I+GPDFPT  +I+G  GIK+AY TGRG
Sbjct: 182 PPHNLRELADAIYWLLENPDADDATALEACMEYIKGPDFPTAGLIVGTQGIKDAYTTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
           SI +RGV+ IE+    R+ IV+TE+PYQVN   ++  IAE VR+ ++  I+ + DE SDR
Sbjct: 242 SIRMRGVTSIEEEGS-RQTIVITELPYQVNPDNLISSIAEQVRDGKLAGISKIEDESSDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L  +L+ +VA +
Sbjct: 301 VGMRIVVTLKRDAVPRVVLNNLYKHSQLQTNFGANMLSIVDGVPRTLRLDQMLRYYVAHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + ARR L+       
Sbjct: 361 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSETVDVARRGLI------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + + EVQ  AIL ++L RL  L R  I +EL  +   I 
Sbjct: 414 -------------------DLLTIDEVQADAILAMQLRRLAALERQKIIDELAEIEAIIA 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  DIL+S  R   I++ EL  + D+    RR++I+    D+ +ED I RE++VVT++  
Sbjct: 455 DLKDILASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIARENVVVTITST 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR  +  Y++QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 515 GYAKRTKVDAYKSQRRGGKGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ + N+L     ERI  ++     E   +  Y+V AT  G V++++LSD+
Sbjct: 575 LPEASRTARGQHVANLLEFQPEERIAQVIQIQSYE---DAPYLVLATVQGRVKKSRLSDY 631

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                 G IA+ L+  D+++    C+ E+D+LL ++ GQ +RF      +R   GR++ G
Sbjct: 632 ESARSGGLIAINLNEGDKLIGASLCSNEDDLLLVSEEGQSIRFSADDEQLRPM-GRSTAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+G+     D +++M +V                                          
Sbjct: 691 VKGMRFRGDDHLLAMTVVRDG--------------------------------------- 711

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L  +  G+GKRTS  ++ +  R G G+     +   + G L+ 
Sbjct: 712 --------------SYLLVATAGGYGKRTSMDEYSVQGRGGVGVVTFKYNP--KRGKLIG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              V+++DQI  ++  G +IR  VN+IR +SRAT GV + +      +++++R
Sbjct: 756 ALAVDNDDQIFAITSAGGVIRTEVNQIRPSSRATMGVRLVNLEDGIELLAIDR 808



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 97/231 (41%), Gaps = 23/231 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVI 736
           DE++++   ++  D+    + G      I  ++      +  +  + L      +  ++I
Sbjct: 393 DEVIALIRRSETVDV---ARRGLIDLLTIDEVQ------ADAILAMQLRRLAALERQKII 443

Query: 737 S-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
             +A +    AD  + +       A  R    +  +       S +     +   ++L  
Sbjct: 444 DELAEIEAIIADLKDILASPGRQRAIVRDELKEIVDKYGDDRRSQIIAATGDVTEEDLIA 503

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQII 854
           +E  ++T++  G+ KRT    ++   R GKG+R  ++    +   +V  F V + +D I+
Sbjct: 504 RENVVVTITSTGYAKRTKVDAYKSQRRGGKGVRGAEL----KQDDVVRHFFVCSTHDWIL 559

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902
             ++ G + R+   E+  ASR  +G  + +  +   +ER+  V +I+  E 
Sbjct: 560 FFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEERIAQVIQIQSYED 610


>gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126]
 gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126]
          Length = 839

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/888 (39%), Positives = 526/888 (59%), Gaps = 78/888 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E + I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRILFGM ++G+  N+
Sbjct: 3   EGENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+YD + RMAQ WSLR  +++GQGNFGS+DGD PAA R
Sbjct: 63  PYKKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  +L D+ K+TVDF+ N+D S +EP VL A+ PN+L+NG  GIAVGMATN
Sbjct: 123 YTEARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV+G  A IDN DI +  LME I  PDFPTGA I G  G+K A+ TGRG IV
Sbjct: 183 MAPHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIYGYQGVKAAFETGRGRIV 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     RE+++VTEIPY VNKA M+EK A LV EK+I  I+D+RDESDR G R
Sbjct: 243 MRAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V E+++ A  +V+LN LY+YT LQ+ FSVN VAL   +PE   L  ++K +V  R +V+
Sbjct: 303 IVYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGRPETLNLKDMIKHYVEHRHDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRTKY L +A+ RAH+L G  IA+ NLDEV+++IR S +PE AR  LM +         
Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDK--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q +AIL++RL RLTGL R+ I  E   +   I+    
Sbjct: 414 -----------------FKLSEIQAKAILDMRLQRLTGLEREKIIQEYEEIKKLIEYLES 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +L+     + IIK E+  ++D     RRT I+    +  DED I  ED+V+T+SH GY+K
Sbjct: 457 VLADEGLRMNIIKDEMQEIQDRYGDERRTEIIHSAEEFTDEDMIPNEDVVITLSHQGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L+ Y+ Q RGG G  G   +D+DF   LF+  TH  +L F+ LG VY  KV+RLP G
Sbjct: 517 RTLLNEYKTQGRGGVGSKGAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ++G+A+ N++++   + +  ++                                   
Sbjct: 577 SKTSKGRAIQNLINIESEDSVRAVINVE-------------------------------- 604

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                   LD  D I         N +++ T+ G   +   + +  ++   + G+  IS+
Sbjct: 605 -------NLDDADYI-------NNNFLVMCTEKGTIKK---TTLEAYSRPRANGINAISI 647

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +GD+++++  + + D +        + +      +         ++  +  +G      
Sbjct: 648 NEGDRLLNVK-LTNGDNNIIIAARSGRAIRFHESNVRPMGRTAAGVRGITLKDGKDIVVE 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +  +   +L VSEKG+GKR+   D+RI+ R GKG++  +V++  + G LVA+  V D
Sbjct: 707 MVAITRENANLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTE--KTGELVAIKEVID 764

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           +D +++++  G  IR+ V  +R+  RAT+GV +    +++ + SVE++
Sbjct: 765 SDDLMIINKSGITIRMAVESLRVMGRATQGVRLIKVNENDSISSVEKV 812


>gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522]
 gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522]
          Length = 843

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/833 (41%), Positives = 511/833 (61%), Gaps = 33/833 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+++  +  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  L+ D+ KDT+D++ NYDGS  EP+VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A+ +NP I    LME I GPDFPTGA I+G +GI+ AY TG+GSI 
Sbjct: 183 IPPHNLGEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIVGVSGIRRAYETGKGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  + +I+VTEIPYQVNKA ++EKIAELVR+K++  I DLRDESDR G R
Sbjct: 243 IRAKAEIED-NNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  +A+V+LN LY+ T+LQS F +NM+AL   +P+  ++  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNANVLLNNLYKQTALQSSFGINMLALVDGRPKVLSIKEVLYHYLEHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ ++DE++ +IR S   E AR+ LM+          
Sbjct: 362 RRRTEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLME---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L  +IKE   
Sbjct: 412 ----------------NFSLSHDQAQAILDMRLQRLTGLERDKIEAEYQELVEKIKELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L II++EL  ++D  +  RRT I  G   MEDED I R+++V+T+SH GY+K
Sbjct: 456 ILADDEKVLAIIREELTDIRDRYNDERRTIITFGEDSMEDEDLIPRQNVVITLSHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR+Q+RGG+G  G+   D+DFV  LFI ++H  +LFF++ G VY+ K + +P  
Sbjct: 516 RIPLSTYRSQKRGGRGVQGMGTHDDDFVQHLFITNSHDHLLFFTNKGKVYRLKGYEIPSF 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +  A+G  +IN+L + + E ++T++P  E +      Y+ F TK G  +R  L  F  I 
Sbjct: 576 NRTAKGIPIINLLQIEKDEYVSTVIPVDEFD---EERYLFFMTKDGIAKRTALKVFSNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R G  A+ L   D +  V       +I+  T+ G  +RF  + +R+  GR + GV+G++L
Sbjct: 633 RGGLFAINLREGDALHGVRLTDGTKEIIAGTRKGMSIRFHENDVRLM-GRTATGVKGVTL 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + DQV+ M  +    A            +                    ++        
Sbjct: 692 QENDQVVGMDTIEEDQAVLIVTEKGFGKRTPV--SEYRIQTRGGKGIKTCNITDKNGPLI 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             ++   +  ++ ++  G   R    +   + R+ +G+R   V     +  + 
Sbjct: 750 SLKVVSDDHDLMIITNSGVIIRMHVEEISTTGRNTQGVRLIRVGDEEHVSTVA 802


>gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 893

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/929 (37%), Positives = 512/929 (55%), Gaps = 102/929 (10%)

Query: 1   MTEHIISSDEEE-------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++ +     +E        + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MSDEVEEIIGDEGATNVAAPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G      + K +RI G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ G
Sbjct: 61  RRVLYAMYDGGYRPTASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN
Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMAT IP HNL EV  G    +++PD   + L++     I GPDFPTGA
Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR
Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    
Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G ++ +VA + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP
Sbjct: 360 PRTLSLDGFVRHWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E Q  AIL L+L RL  L
Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I+ E   L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M 
Sbjct: 454 ERLKIQEESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + +      Y+
Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYD---QADYL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L        DE++S    +   D+LL ++ G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVSRAG 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF      +R   GR + GV G+   + D +++M +V  +  D D            
Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------ 737

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +  V+E G+ KRT+  D+ +  
Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G++  ++ +    G LV     +  D+++ +   G ++R  V E+    R T+GV 
Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                  +R+++V R  E ++ +  ++ +
Sbjct: 818 FAKPDAGDRIIAVARNTERDMEEAVDAAD 846



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 99/272 (36%), Gaps = 16/272 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
           D +V  +  G VK+  LS Y + R GG     +   +E    +L       T   +L  S
Sbjct: 628 DYLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEEGNYDELVSARLLSTGQDLLLVS 687

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +          P  R  + +  +   +      ++     + SW +  +   T+
Sbjct: 688 RAGQSLRFHADD-DTLRPTGRATSGVTGM---RFREDDYLLAMDVVDPSWQDADLFVVTE 743

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709
            G  +R  + D+  +   G + +K+ +  E    ++        +++L     G+ VR  
Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD- 768
           +  +    GR + GV       GD++I+  +  + + D +E +       +     S D 
Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIA--VARNTERDMEEAVDAADSAPSADSADSTDQ 859

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
            + + + + D+      S      L+  E  +
Sbjct: 860 AQALQAPEGDTGDSPADSAADTVALEDNESEV 891


>gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 848

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/837 (40%), Positives = 508/837 (60%), Gaps = 26/837 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I +D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRNDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RMAQD+S+R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K AH +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGDGAAAMRYTEIRMAKIAHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + ++ C+ ++D P+ ++D L+ I++ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLTDTINACLRLLDEPETEIDELINILQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE I++ EIPYQVNKA ++EKI ELVREK +  ++D
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMVAL   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTQLQDSFGINMVALVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++R+I+ S +   A+ +L+
Sbjct: 361 AEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R+W +  ++D++   D        +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 SRAWRSGLVEDMLSRTDLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            +++I  +  ++  +I + LDIL+   R+  II++EL   K      RR+ I     D+ 
Sbjct: 481 DQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGDERRSEINPFGGDIA 540

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+     +DEDF+  LF+ +TH  
Sbjct: 541 DEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDY 600

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ F++LG  +  KV++LP G   +RG+ + N++ L +GE+++ I+   E      + YV
Sbjct: 601 LMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFP---EDQYV 657

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            FAT  G V++ +LS F  +   G  A+ L   D ++     +  +DI+L + LG+ +RF
Sbjct: 658 FFATAQGMVKKVQLSAFKNVRSQGIKAIALKEGDYLVGAAQTSGSDDIMLFSNLGKAIRF 717

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             +     +G         +    D  I   I    + +  +    +       R     
Sbjct: 718 --NEYWEKSG---------NEEAEDADIETEISDDLEDETADNENALPSGKHGVRPSGRG 766

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           +  +  ++  +  +         E    +  +LT +  G+GKRT   D+    ++ K
Sbjct: 767 SGGLRGMRLPADGKIVSLITFAPEAAQSDLQVLTATANGYGKRTPIADYSRKTKADK 823



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 61/236 (25%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
             +++       VV  T  G ++    +D+    R   GK A      D I ++      
Sbjct: 539 IADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTH 598

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + ++  T LG+C    +  +    GRNS G      I L +G++V ++  V         
Sbjct: 599 DYLMCFTNLGKCHWIKVYKL-PEGGRNSRGRPINNVIQLEEGEKVSAILAVRE------- 650

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        ++Q++   + +G  K
Sbjct: 651 -------------------------------------------FPEDQYVFFATAQGMVK 667

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           +     F   N   +GI+A  + +      LV     + +D I+L S+ G  IR  
Sbjct: 668 KVQLSAF--KNVRSQGIKAIALKEG---DYLVGAAQTSGSDDIMLFSNLGKAIRFN 718



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 78/191 (40%), Gaps = 11/191 (5%)

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            + RN  G     L + + V     ++    DY + +   + ++   R    +T+     
Sbjct: 472 MSLRNLTG-----LDQEEIVGDYKNIMAKIIDYLDILAKPERITQIIREELEETKTNFGD 526

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +  S +     +   ++L  + + ++T++  G+ K   + D++   R G+G +A      
Sbjct: 527 ERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDE 586

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVV 892
           + I  L   F  N +D ++  ++ G    + V ++    R ++G     +    + E+V 
Sbjct: 587 DFIETL---FVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVS 643

Query: 893 SVERIRESEIV 903
           ++  +RE    
Sbjct: 644 AILAVREFPED 654


>gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
 gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1]
          Length = 829

 Score =  797 bits (2059), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/893 (40%), Positives = 533/893 (59%), Gaps = 92/893 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               I +++I + +QNSYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    K+
Sbjct: 6   NNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHGAKF 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+G+YHPHG+ A+YDAL RMAQD+S+R+ L++GQGNFGSVDGD  AA RYT
Sbjct: 66  KKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP
Sbjct: 126 EARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  E++ G  A++ NPDI L  LME I+ PDFPTG +I G+ GI +AY TGRG I +R
Sbjct: 186 PHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGGIIFGKKGIMDAYETGRGRIKVR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIE+    +E IV+ E+PYQVNKA ++E IA LV++K I  ++++RDESDR G RVV
Sbjct: 246 AKTHIEQ-KSKKEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGMRVV 304

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A ++++LN L++ TS+Q+ F + M+++   +P  F +I ILK F+  R+ +++R
Sbjct: 305 IELKRDAMSEIVLNNLFKQTSMQTTFGIIMLSILNQEPRIFGIITILKHFINHRKTIIIR 364

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+ RAH+L GL  A++ +++V+R+IR S N E A+  L+             
Sbjct: 365 RTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSE----------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S++Q  +I+ +RL RLTGL  + I NEL  L   I+    IL
Sbjct: 414 ---------------FDFSDIQAASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESIL 458

Query: 492 SSRSRLLGIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            S   L  II +E   V D   +  RRT I +   D++ ED I  E MVVT++H GY+KR
Sbjct: 459 RSEEVLHSIIAEEFDEVLDTYGSNERRTEIEDDYDDIDIEDLIPNEPMVVTITHRGYIKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPL++Y  Q+RGGKG++ V   ++DF+   F  +TH ++LF +  G ++  KV+++P GS
Sbjct: 519 VPLTLYEKQKRGGKGKTAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+GKA++N+L+L   ERI +I+P  +      +  +VF T+ G V+R  LS+F  I  
Sbjct: 579 RIAKGKAVVNLLNLMADERIRSIIPTTDFS---EDKGLVFFTQKGVVKRTNLSEFSNIRS 635

Query: 671 SGKIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +G  A+ LD  D +++ +   Q    + + TKL QC++F I   R   GR++ GVRGI  
Sbjct: 636 NGVRAIVLDEDDALITAKIADQSIKYLFIMTKLAQCIKFDIEKTRE-QGRSTRGVRGIKF 694

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
               D+VI   I+ +                                             
Sbjct: 695 KHPEDEVIDANIIAN--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPV 847
                   EQ IL V+EKG GKRT + ++R++NR G G+ A  ++  ++ G  +V    V
Sbjct: 710 -------DEQEILIVAEKGIGKRTDAGEYRLTNRGGSGVIAMKMT--SKTGKYVVGCLMV 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++  ++ ++  G +IRV +  I  +SR T GV I      + V +V R  + 
Sbjct: 761 DESMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDDVANVSRCPKQ 810


>gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13]
          Length = 830

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/844 (42%), Positives = 524/844 (62%), Gaps = 38/844 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E   +  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K 
Sbjct: 2   SERSSVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI GEV+GKYHPHG++A+YD + RMAQD++ R +LI+G GNFGSVDGD  AA RY
Sbjct: 62  YKKSARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K +  +L D+ KDT+D++ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNI
Sbjct: 122 TEARMSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H LGE++DG +AV  +PDI +  LMEII GPDFPT   ILGR+GI+ AY TGRGSI +
Sbjct: 182 PPHQLGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQILGRSGIRRAYETGRGSITV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE     RE I+V E+PYQVNKA ++EKIA+LVR+K+I  I+DLRDESDR G R+
Sbjct: 242 RAKVEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+ A+A+V+LN LY+ TSLQ+ F +N++AL   +P+   L   L  ++  ++ V+ 
Sbjct: 302 VMEVKKDANANVLLNNLYKQTSLQTSFGINLLALVNGEPKVLNLKQCLYYYLEHQKVVIK 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA  RAH+L GL IA+ +LD V+ +IR S   + AR  LM            
Sbjct: 362 RRTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +AIL++RL RLTGL R+ I  E   L   I E   I
Sbjct: 412 ----------------FSLSEKQAQAILDMRLQRLTGLEREKIEEEYQGLMQLIAELKAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L+   ++L II++EL  VK+  +  RRT I+  G  ++EDED I R+++V+T++H GY+K
Sbjct: 456 LADEEKVLEIIREELTEVKERFNDTRRTEIMVGGFENIEDEDLIPRQNVVITLTHNGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PLS YR+QRRGG+G  G+   + DFV  L   STH ++LFF++ G VY+ K + +P  
Sbjct: 516 RLPLSTYRSQRRGGRGIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVYRAKGYEIPEF 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  A+G  +IN+L + +GE +  I+P  +     ++ Y+ F TKHG  +R+ LS F  I 
Sbjct: 576 SRTAKGIPIINLLEVEKGEWVNAIIPVEDFV---DDWYLFFTTKHGISKRSPLSQFANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   DE++SV+      ++++ TK G  +RF  + +R   GR + GV+GIS+
Sbjct: 633 KGGLIALGLRESDELISVKLTDGTKEMIIGTKKGMLIRFHETDVRSM-GRTATGVKGISI 691

Query: 730 AKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           ++ D+V+ M ++    D     +  Y K   A+   +     +     N +   G +   
Sbjct: 692 SENDEVVGMELLDEGLDVLVVTKNGYGKRTPAEEYRVQSRGGKGIKTCNITDRNGELVSV 751

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           +       E+ ++ ++  G   R S        R+ +G++   +++      +  V  V+
Sbjct: 752 KTVTT---EEDLMLITASGVLIRMSVDGISQMGRNTQGVKLIRLAENEF---VTTVARVD 805

Query: 849 DNDQ 852
             ++
Sbjct: 806 KEEE 809


>gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 807

 Score =  797 bits (2058), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/843 (43%), Positives = 526/843 (62%), Gaps = 38/843 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            EE   +  V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 2   NEEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA R
Sbjct: 62  PYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG I+
Sbjct: 182 IPPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    + +IV+TEIPY V KA ++EKIAELV  K+I  IADLRDESDR G +
Sbjct: 242 VRAKAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMK 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV
Sbjct: 301 IVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L GL IA+  +DEV+ IIR S     A+  LM+R         
Sbjct: 361 TRRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKR--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AI+++RL RLTGL R  + +EL  L  +IKE  +
Sbjct: 412 -----------------FGLSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L IIK+ELL +K++  +PR+T IV    +++ ED +  ED+VVT++H GY+K
Sbjct: 455 ILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL  Y++Q+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P  
Sbjct: 515 RMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPES 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N++ ++QGE++T ++P  +   S +  YV+  TK G +++  + +F  I 
Sbjct: 575 GRQAKGTAIVNLIQISQGEKVTAVIPLKK---SDDIKYVLMCTKKGIIKKTSIEEFKSIK 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ LD  DE+++V+    E ++++ T  G  +RF    +R   GR + GV  ISL
Sbjct: 632 RNGIIAITLDENDELINVKLTNGEREVIIGTAKGYAIRFNEKDVRPM-GRVARGVMAISL 690

Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + D+V+ M +V    +        + K    +   I G   +       S   G +   
Sbjct: 691 REDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSI 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           RC      E   + +S  G   R    D    +R  +G+    +    +   +V+   + 
Sbjct: 751 RCV---QPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKL---EDGDRVVSTARIE 804

Query: 849 DND 851
             +
Sbjct: 805 SEE 807



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 9/214 (4%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749
           E+ ++  T  G   R P+   +    R   G+ GIS  + D V  + I    D      +
Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKSQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           +   Y                         S    ++     +     +++L  ++KG  
Sbjct: 560 KGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGII 619

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+TS  +F+   R+  GI A  + +      L+ V   N   ++I+ + KG  IR    +
Sbjct: 620 KKTSIEEFKSIKRN--GIIAITLDE---NDELINVKLTNGEREVIIGTAKGYAIRFNEKD 674

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R   R  +GV+  S  +D+ VV ++ +     V
Sbjct: 675 VRPMGRVARGVMAISLREDDEVVEMDLVHPDGEV 708


>gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
 gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678]
          Length = 812

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/843 (41%), Positives = 525/843 (62%), Gaps = 33/843 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  + I+ EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M++ G+  +K 
Sbjct: 2   ENKSKIIPIEISQEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++++Y A+ +MAQD++ R LL++GQGNFG+VDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL D+ K+TVDF PN+D S QEP+VL A+YPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEARMSRLATELLRDIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V  IDN D   + LME I GPDFPTGA+I+G  GIK AY TGRG + +
Sbjct: 182 PPHNLGEVIDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGRGKVRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIV+TEIP+QVNK+ ++E+IA+LVR+K++  I+DLRDE++R G RV
Sbjct: 242 RARAEIEELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A++ILN LY+++ L+  FS+  +A+    P+   L   L+ +V  +++V+ 
Sbjct: 302 VIELKRDVNANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKDVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA+ RAH+L GL IA+ N+D V+ IIR S N + A+ +L++           
Sbjct: 362 RRTQFELKKAQARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS++Q +AIL++RL RLTGL RD I NE   L   I     I
Sbjct: 412 ----------------FALSDIQAQAILDMRLQRLTGLERDKIDNEYKELMERITYLESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+  ++L G+IK E+L++KD+   PRRT I     ++  +D    E++ +T++HLGY+KR
Sbjct: 456 LADENKLFGVIKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFVTDL   +TH+ +LFF++ G VYK   + +P G 
Sbjct: 516 LPADTYKSQKRGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKHGNVRRNKLSDFIQIN 669
             ++G A++N+L LN GE+I   + F  D     +  Y++FATK G V++  +SDF  IN
Sbjct: 576 RTSKGTAIVNLLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNIN 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SG IA+ L   DE++ V     E DI+L T+ G  +RF  + +R   GR + GV+GI+L
Sbjct: 636 KSGLIAINLKDGDELIGVNRTNGEEDIILVTENGMSIRFNENDVRSM-GRTATGVKGITL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +KGD V+SM ++ +               +                    ++     +  
Sbjct: 695 SKGDHVVSMDLISNGTDLLVVSEKGFGKRTETEEYRPQI--RAGKGIKTYNINSKTGKLV 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L  ++  ++ ++  G   R    +  I  R   G++     +      +V++  +  
Sbjct: 753 GATLVDEDDEMMMINSNGVLIRIRVNEISIFGRVTSGVKLMKTDE---EVEVVSIAKLKG 809

Query: 850 NDQ 852
            ++
Sbjct: 810 EEE 812



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/499 (11%), Positives = 159/499 (31%), Gaps = 91/499 (18%)

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
            D   + +++     ++ ++ +S      G +      +K+   T R    V      E 
Sbjct: 190 IDATVHYIDNRDCTTEDLMEHISGPDFPTGAMIIGTEGIKEAYRTGR--GKVRVRARAEI 247

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E+    +  +V       V +  L    A     K   G+    ++        + H   
Sbjct: 248 EELPKGKQQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDE-------TNRHGIR 300

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +       V       L      ++ +   +I++L   ++   ++   +    + +    
Sbjct: 301 VVIELKRDVN--ANIILNNLYKHSQLEETFSIINLAIVDKTPKVLNLKQYLECYVDHQKD 358

Query: 650 FATKHGNV--RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
             T+      ++ +    I         + LD+ D ++S+   ++   I    K      
Sbjct: 359 VITRRTQFELKKAQARAHILEGLK----IALDNIDRVISIIRGSENGQI---AKEKLIEE 411

Query: 708 FPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQ 761
           F +S I+      +  +  + L      + D++ +    ++      +  +     +   
Sbjct: 412 FALSDIQ------AQAILDMRLQRLTGLERDKIDNEYKELMERITYLESILADENKLFGV 465

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            +      ++  +    + ++    E   ++L  +E+  +T++  G+ KR  +  ++   
Sbjct: 466 IKDEMLAIKDKYADPRRTEIKPAEGEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQK 525

Query: 822 RSGKGIRATDVSKIN--------------------------------------EIGALVA 843
           R G+GI A    + +                                      +  A+V 
Sbjct: 526 RGGRGISALTTREEDFVTDLISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVN 585

Query: 844 VFPVNDNDQI-------------------ILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +  +N  ++I                   +  +  G + + P+++ +  +++  G++  +
Sbjct: 586 LLQLNPGEKIARTISFNTDSKENEDLKYLLFATKSGIVKKTPISDFKNINKS--GLIAIN 643

Query: 885 TAKDERVVSVERIRESEIV 903
               + ++ V R    E +
Sbjct: 644 LKDGDELIGVNRTNGEEDI 662


>gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F]
          Length = 846

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/882 (38%), Positives = 516/882 (58%), Gaps = 88/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 78  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+  AH++ GL IA  N+D+V+ II+ + + E A+  LM +               
Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTK--------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL  L+GL R++++ EL  L   IK+  +IL ++ 
Sbjct: 423 -----------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II  +L  +  +    RRT+I  G    +++E  I  E +V+T S  GY+KR+P+S
Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G  G+   ++D V  L + STH+ +LFF++ G VY+ +  ++P+GS  ++
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN++S+ + E++ +++   +     ++ Y  F+TK G V+R K S+F +I  +GKI
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDY----DSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           A+KL   D +  V     + +I +    G  VRF    +R   GR + GV G+      D
Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI ++                                                      
Sbjct: 707 EVIGLS-----------------------------------------------------S 713

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +L V EKG GK T   ++R++NR  KG+    V+   + G ++    VN N+++
Sbjct: 714 SHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +++S  G ++RVP+ E+    R T GV + S  + E + SV 
Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVA 813


>gi|87308319|ref|ZP_01090460.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
 gi|87288876|gb|EAQ80769.1| DNA gyrase subunit A [Blastopirellula marina DSM 3645]
          Length = 922

 Score =  797 bits (2057), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/897 (39%), Positives = 526/897 (58%), Gaps = 20/897 (2%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +SI DE++ SYLTYA++VI+ RA+PD+RDGLKP  RRIL  M  + +      VKCA+IS
Sbjct: 1   MSIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGSGRVKCAKIS 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+  G YHPHG + IY  L RMAQ+W+ R LL++ QGNFGS+ G PPAA RYTE R+   
Sbjct: 61  GDTSGNYHPHGESVIYPTLVRMAQEWNTRYLLVDKQGNFGSIAGLPPAAMRYTEARMSPY 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+DL  DTVD+ P YD    EP VL ++YPN+LVNG  GIAVGMAT+IP HNLGEV
Sbjct: 121 AQMLLEDLRLDTVDYIPTYDERNTEPTVLPSKYPNLLVNGSQGIAVGMATSIPPHNLGEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               V VI+ P + ++ L++II GPDFPTG +I GR+G++  Y TGR +I++R  + I+ 
Sbjct: 181 CRAVVKVIEEPTVPIEELLQIIPGPDFPTGGIICGRSGVRRGYLTGRSTILVRSHTTIDN 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRG 317
               R +IV+ +IPYQ  +  + E+IA    E RIV I+ +R+ESD ++  R+V+ELKR 
Sbjct: 241 VK-GRNRIVIHDIPYQQTRDRVEERIAAAANEGRIVGISGVRNESDLKEPVRLVLELKRD 299

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A  D++LNQL+++T +Q  FS+ M+AL   KP   T+  ++  F+  R  V+ RRT++LL
Sbjct: 300 ADPDIVLNQLFQFTPIQDTFSIIMLALVDGKPRTLTIRDLIDEFIRHRVIVIRRRTQFLL 359

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI--DLID 435
           ++AR R H + GL +A+A++DE++RIIR S     A+  LM     AS +   +  +  +
Sbjct: 360 SRARQRKHTVEGLLLALADIDEIIRIIRSSSTQAEAKTRLMGIESPASMLARALGEEGFE 419

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                 G      L+ VQ  AIL + L +L  L ++ +  E   L  EI+E L ILS   
Sbjct: 420 LFQQERGVADVYTLTGVQADAILRMTLGQLVNLEQERLSGEHAQLLAEIREYLRILSDER 479

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +  II+ ++L ++ +    RRT I  E L  ++ ED I  E MVV++SH GY+KR P +
Sbjct: 480 NIREIIRDQMLEIEAKFGDKRRTEISLEELGYIDLEDLIEEETMVVSISHSGYIKRTPAT 539

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+AQRRGGKG  G    D D +  LF+ STH  +LFF++ G VY +KV+ LP  S ++R
Sbjct: 540 TYKAQRRGGKGIKGAKSEDADPIQHLFVASTHAYLLFFTTKGKVYWQKVYDLPQLSRESR 599

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+A++N+L L +GERI       + +    + Y+V AT+ G V++ KL  + +  + G I
Sbjct: 600 GRAIVNLLQLEEGERIADCRAVRDFD--VEDHYLVMATRKGLVKKTKLEAYSRPMKKGII 657

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A+KL   DE++ V      ++++L+T  G  +RF  S  R   GRNS GV+GI L   D+
Sbjct: 658 AIKLREDDELVDVVVTQPGDELVLSTSKGMAIRFCESDARPM-GRNSSGVKGIKLDADDE 716

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++ M +                  +      +       S ++ +  +    EE   E +
Sbjct: 717 LVGMVVADPDAQLLTVCEHGHGKRTYFGPNQTRADNAPPSDESANEDDSAAEEEPVVEDE 776

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                          + +S   +R   R GKG+R    +  N  G +V++  V+D D+++
Sbjct: 777 ASGDDD---------ELSSGAKYRTQRRGGKGLRDIKTTARN--GRVVSIVRVDDEDEVL 825

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE-IVDEAESTE 910
           +++ +G + RV   EI I  R T+GV I S  KD+ + +V R+ + + + DE ES+E
Sbjct: 826 MMTARGKIQRVSAAEISIVGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSE 882



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 84/255 (32%), Gaps = 13/255 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           D +V  +  G   R   S  R   R   G  G+ +  +D +  + +      +L     G
Sbjct: 677 DELVLSTSKGMAIRFCESDARPMGRNSSGVKGIKLDADDELVGMVVADPDAQLLTVCEHG 736

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +      P  +            + +         P  EDE+S ++  +      G 
Sbjct: 737 HGKRTYFG--PNQTRADNAPPSDESANEDDSAAEEE--PVVEDEASGDDDEL----SSGA 788

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             R +      +      A        ++S+     E+++L+ T  G+  R   + I   
Sbjct: 789 KYRTQRRGGKGLRDIKTTA----RNGRVVSIVRVDDEDEVLMMTARGKIQRVSAAEI-SI 843

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVR +SL K D + ++  V   D+  DE     +  +      +   E      
Sbjct: 844 VGRNTQGVRIMSLDKDDSLAAVVRVPKDDSVDDELESSEEPSTPPADGGAPVVEPAPPEV 903

Query: 777 NDSSVEGNISEERCQ 791
            D        E+  +
Sbjct: 904 TDVDSNSTAEEDSPE 918


>gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
 gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421]
          Length = 838

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/906 (37%), Positives = 514/906 (56%), Gaps = 91/906 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E        E   +  + I  E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEITTP----EGGILIPIPIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+ ++    KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++
Sbjct: 57  EEKGLRYSGPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GDP AA RYTE ++ K A  +++D+ K+TVDF  N+D S +EP VL A++P +L NG  
Sbjct: 117 GGDPAAAYRYTEAKMAKIAESMVEDIKKETVDFISNFDDSTKEPTVLPAKFPFLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL E+     A IDNP+I +D L + I+GPDFPTG  I G+ GI+ A
Sbjct: 177 GIAVGMATNMPPHNLREIASAISAYIDNPEITIDELCKHIKGPDFPTGGTIFGKKGIRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I++RG   IE     +E I+ TE+PYQVN   ++ +I EL R K I  IA++ 
Sbjct: 237 YKTGRGKILVRGRFTIEVDKKGKETIIFTEVPYQVNTTNLVTRIGELARNKVIDGIANVN 296

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE SDR G R+VIELKRGA   V+LNQL+  T+LQS F V  +AL   +P+  TL  +++
Sbjct: 297 DETSDRTGLRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVEGRPQTLTLKDLVR 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EVV RRT++ L KA +RAH+L  L +A+ N+DEV+ IIR S +  TA+  LM+
Sbjct: 357 CFVNHRIEVVTRRTRFDLRKAEERAHILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMK 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                              EVQ++AI++++L RLT L   D+R EL  
Sbjct: 417 R--------------------------FGFDEVQSQAIVDMQLKRLTNLEIKDLRKELEE 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDM 538
           L I I    D+L    ++  ++K E   + D+    RRT IV + + ++  ED I +E+M
Sbjct: 451 LEILIAHLKDLLEHPEKIRALVKDETNEIADKFGDERRTDIVADEVEELNIEDLIQKEEM 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+ +S+LGY+KR+P+S Y++Q RGGKG +   + ++DF+  +F  STH  ++F ++ G  
Sbjct: 511 VILISNLGYIKRIPVSAYKSQNRGGKGSNSANLAEDDFIDQIFTASTHDYIMFITNEGKA 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV  +P  S  +RG  + ++LS++  E IT ++   E     ++ Y++ AT  G V+
Sbjct: 571 YWLKVHEIPEASRTSRGSHIKSLLSVSGDEEITAVVSLKEFS---DSTYLLMATAAGVVK 627

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +    +F      G IA+KLD  D+++S    T +++I+L T+  Q +R     IR   G
Sbjct: 628 KVTTDNFQNAKTRGIIAIKLDDGDKLVSAILTTGKDEIMLITRHAQALRMTEEEIRPL-G 686

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R S GV GI LA+GD++     V                                     
Sbjct: 687 RASRGVAGIKLAQGDELTGALRVAD----------------------------------- 711

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                              Q +L ++E G+GKR    +F    R+  G R   +S+  + 
Sbjct: 712 ------------------NQKMLIMTENGYGKRVEFSEFTPHGRATGGQRIYTLSE--KT 751

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           G +V +  V D+D+++ ++ +G  IRV V+ I I  R+ +GV +      + ++ ++ + 
Sbjct: 752 GEVVGLLTVLDDDEVVCITGQGKTIRVNVDSISIMGRSAQGVRVLDIESPDILIGLDVVA 811

Query: 899 ESEIVD 904
                +
Sbjct: 812 RETNEE 817


>gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
 gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653]
          Length = 807

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 365/843 (43%), Positives = 526/843 (62%), Gaps = 38/843 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            EE   +  V I DEM+NSY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 2   NEEMDKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K   + GEV+GKYHPHG+AA+YD L R+AQD+S+R +LI+G GNFGS+DGDPPAA R
Sbjct: 62  PYKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K+TVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG VA IDNP I +D LM+ I+GPDFPTG +ILGR GIK  Y TGRG I+
Sbjct: 182 IPPHNLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIILGRDGIKETYETGRGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    + +IV+TEIPY V KA ++EKIAELV  K+I  IADLRDESDR G +
Sbjct: 242 VRAKAEIEEHK-GKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMK 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR  +  VILN+LY +T +Q  F   M+AL   +P+   L  I++ +V  + +VV
Sbjct: 301 IVIELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGEPKILNLKQIIEKYVDHQADVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L KA +RAH+L GL IA+  +DEV+ IIR S     A+  LM+R         
Sbjct: 361 TRRTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKR--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AI+++RL RLTGL R  + +EL  L  +IKE  +
Sbjct: 412 -----------------FGLSDKQAQAIVDMRLGRLTGLERQKVEDELKELIEKIKELKE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+   ++L IIK+ELL +K++  +PR+T IV    +++ ED +  ED+VVT++H GY+K
Sbjct: 455 ILADERKVLEIIKKELLEIKNKYASPRKTVIVAKEEELDFEDLVQLEDVVVTMTHYGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+PL  Y++Q+RGGKG  G+  R++DFV D+FI +TH  +LFF++ G VY  +   +P  
Sbjct: 515 RMPLDTYKSQKRGGKGILGISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPES 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             QA+G A++N++ ++QGE++T ++P  +   S +  YV+  TK G +++  + +F  I 
Sbjct: 575 GRQAKGTAIVNLIQISQGEKVTAVIPLKK---SDDIKYVLMCTKKGIIKKTSIEEFKSIK 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+G IA+ LD  DE+++V+    E ++++ T  G  +RF    +R   GR + GV  ISL
Sbjct: 632 RNGIIAITLDENDELINVKLTNGEREVIIGTAKGYVIRFNEKDVRPM-GRVARGVMAISL 690

Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + D+V+ M +V    +        + K    +   I G   +       S   G +   
Sbjct: 691 REDDEVVEMDLVHPDGEVLTVTEKGFGKRTDLEEYRIQGRAGKGIIAMKLSKKTGKLVSI 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           RC      E   + +S  G   R    D    +R  +G+    +    +   +V+   + 
Sbjct: 751 RCV---QPEDEFMIISANGILIRMKVKDISKMHRDTQGVTLMKL---EDGDRVVSTARIE 804

Query: 849 DND 851
             +
Sbjct: 805 SEE 807



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 9/214 (4%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYD 749
           E+ ++  T  G   R P+   +    R   G+ GIS  + D V  + I    D      +
Sbjct: 501 EDVVVTMTHYGYIKRMPLDTYKSQK-RGGKGILGISTREDDFVEDIFITTTHDRLLFFTN 559

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           +   Y                         S    ++     +     +++L  ++KG  
Sbjct: 560 KGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEKVTAVIPLKKSDDIKYVLMCTKKGII 619

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K+TS  +F+   R+  GI A  + +      L+ V   N   ++I+ + KG +IR    +
Sbjct: 620 KKTSIEEFKSIKRN--GIIAITLDE---NDELINVKLTNGEREVIIGTAKGYVIRFNEKD 674

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R   R  +GV+  S  +D+ VV ++ +     V
Sbjct: 675 VRPMGRVARGVMAISLREDDEVVEMDLVHPDGEV 708


>gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
          Length = 836

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/905 (38%), Positives = 527/905 (58%), Gaps = 91/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II++EL  +     TPRRTRI     D  + ED I  E +++T+S   YV
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTRIEMDAGDVRDIEDIISDESVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG+G +G  M+   DF+  ++  ST   +L F++ G  Y  KVWRLP
Sbjct: 517 KRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E      Y+  ATK G V++  L  F 
Sbjct: 577 EGERKAKGKPIINFLEGIRPGEQVAAVLNVKRFE---QGEYLFLATKKGVVKKVSLDAFG 633

Query: 667 QINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE+++       E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 SPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPM-GRAARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D V+S  +V                                           
Sbjct: 693 GVSLKNEQDFVVSCQVVTE----------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +Q +L V + GFGKR+   DFR +NR   G+R+  +++ N  G ++  
Sbjct: 712 ------------DQSVLVVCDNGFGKRSLVCDFRETNRRSVGVRSIVINQRN--GDVLGA 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V D D I+L+S +G  IR+ + ++R+  RAT+GV + +  + + +V++E++  +    
Sbjct: 758 ISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLSINTESV 817

Query: 905 EAEST 909
           E E  
Sbjct: 818 ETEEN 822



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 95/238 (39%), Gaps = 15/238 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             + + +   +  G VK+V L  + + R+ G     +    ++ +    I +    V+ F
Sbjct: 609 FEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDD-GDELIAARHIANDEEKVMLF 667

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           + LG   +    ++      ARG   +++ +                +    +  V+   
Sbjct: 668 TRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQDF--------VVSCQVVTEDQSVLVVC 719

Query: 653 KHGNVRRNKLSDFIQINRS----GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
            +G  +R+ + DF + NR       I +   + D +L   + T  + ILL +  GQ +R 
Sbjct: 720 DNGFGKRSLVCDFRETNRRSVGVRSIVINQRNGD-VLGAISVTDCDSILLMSAQGQAIRI 778

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +  +RV  GR + GVR ++L +GD +++M  +       +        + + +  I 
Sbjct: 779 NMQDVRVM-GRATQGVRLVNLREGDTLVAMEKLSINTESVETEENLAASVQSGQDTIE 835


>gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 826

 Score =  796 bits (2056), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/832 (41%), Positives = 514/832 (61%), Gaps = 33/832 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    +  V I  EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 11  EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 70

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD  AA R
Sbjct: 71  PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 130

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ K+T+D+ PNYDG  QEPVVL AR+PN++VNG  GIAVGMATN
Sbjct: 131 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 190

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+NPD+    LM  I+GPDFPTGA ILGR GI+ AY+TGRGS+ 
Sbjct: 191 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+ + ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 251 MRAKTTIEEVN-NKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 309

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T+LQS F +  +AL   +P+   L  +L  ++  +  V+
Sbjct: 310 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 370 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L  +I E   
Sbjct: 421 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 463

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II +EL  ++      RRT I  G   +EDED I RE++V+T++H GYVK
Sbjct: 464 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 523

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGG+G  G+  ++ DFV  LF+ ++H  ++FF+  G VY+ K + +P  
Sbjct: 524 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++P    E   +  ++ FAT+ G V++  L D+  I 
Sbjct: 584 GRTARGTPIINLIQIEQGETVNAVIPIESFE---SGHFLFFATQQGIVKKTPLKDYNNIR 640

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      +I++ T+ G  + FP   +R   GR + GV+GI +
Sbjct: 641 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGIHI 699

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D VI M IV   +             +                  + + +       
Sbjct: 700 SEDDAVIDMDIVDENNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVV 757

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             ++  +++ ++ ++  G   RTS     I  R+ +G+R  +  + +E+  +
Sbjct: 758 GLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATV 809


>gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
 gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251]
          Length = 827

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/900 (40%), Positives = 532/900 (59%), Gaps = 91/900 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I +++I + +Q+SYL Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +    K+ 
Sbjct: 7   NDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSHGAKFK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+G+YHPHG+ A+YDAL RMAQ +S+R+ L++GQGNFGSVDGD  AA RYTE
Sbjct: 67  KSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  LL DL K+TV+   NYDG+ +EP V+  R PN+L+NG  GIAVGMATNIP 
Sbjct: 127 ARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN  E++ G  A++ NP+I+L  LME I+ PDFPTG  I G+ GI +AYATGRG I +R 
Sbjct: 187 HNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIFGKKGIMDAYATGRGRIKVRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIEK  G+++ I++ E+PYQVNKA ++E IA LV++K I  ++++RDESDR+G RVVI
Sbjct: 247 KTHIEK-KGNKDIIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDREGIRVVI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A ++++LN L++ TS+Q  F + M+++   +P  F +I ILK F+  R+ +++RR
Sbjct: 306 ELKKDAMSEIVLNNLFKQTSMQVTFGIIMLSILNQEPRIFGIIDILKHFINHRKTIIIRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+ RAH+L GL  A+  +DE++R+I+ S N E AR  L+              
Sbjct: 366 TIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSE------------ 413

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S +Q ++I+++RL RLTGL R+ I NEL  L   I     IL 
Sbjct: 414 --------------FDFSVIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILK 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   L GII QE   +       RRT + +   D++ ED I  E MVVT++H GY+KRVP
Sbjct: 460 SEEVLHGIIDQEFDELLTIYTDVRRTDVEDDYDDIDVEDLIPNEPMVVTITHRGYIKRVP 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L+ Y  Q+RGGKG+  V   ++DF+   F  +TH ++LF +  G ++  KV+++P GS  
Sbjct: 520 LAQYEKQKRGGKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+GKA++N+L+L   E+I +I P  +         +VF TK G V+R  LS+F  I  +G
Sbjct: 580 AKGKAVVNLLNLVADEQIQSINPTTDFS---EEKSLVFFTKKGVVKRTNLSEFSNIRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA- 730
             A+ LD  D I++ +   +    + + TK+ QC++F +   R   GRN+ GVRGI    
Sbjct: 637 VKAILLDDDDSIITAKIADKSIKYLFIMTKMSQCIKFDMEKTRD-QGRNTRGVRGIKFKH 695

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+   I+ + +                                             
Sbjct: 696 AEDEVVDANIIANDE--------------------------------------------- 710

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND 849
                  Q IL VSEKG GKRT + ++R++NR G G+ A  ++   + G  +V    V++
Sbjct: 711 -------QEILVVSEKGIGKRTDAGEYRLTNRGGSGVIAMKMTA--KTGKYVVGCLMVDE 761

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
              ++ ++  G +IRV +  I  +SR T GV I      + V SV R  +  I D+ E  
Sbjct: 762 EMDMMALTKAGKMIRVDMQTISKSSRNTSGVYIVK---GDDVASVSRCPKQPIEDDEEDD 818


>gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
 gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K]
          Length = 920

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/901 (38%), Positives = 534/901 (59%), Gaps = 87/901 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EEE   +  ++++ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +N 
Sbjct: 70  EEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFYNA 129

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K AR+ G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGS+DGD  AA R
Sbjct: 130 QYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAAMR 189

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +++ L KDTVDF PNYDGS +EP VL +R PN+L++G  GIAVGMAT 
Sbjct: 190 YTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMATT 249

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  VA+  N +I ++ LM+ I+GPDFPTGA ILG +GI  AY TGRG+IV
Sbjct: 250 IPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGTSGIITAYETGRGAIV 309

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  SHIE     + +I++TEIPY+V K A++EKIA L +EKRI  I+++RDE+ R+G R
Sbjct: 310 LRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRKGIR 369

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI+LK+    +VILN++ + T+LQ  ++ NM+AL   +P+   L   L  ++  + +VV
Sbjct: 370 VVIDLKKNVIPEVILNKVLKLTNLQVNYNFNMIALVKGEPKLLNLKQALDVYLKHQIDVV 429

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRTK+ L +A+DRAH+L GL IAV+N+DEV+R+IR S N   A+ +LM           
Sbjct: 430 TRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMA---------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +  LSE+Q +AI+++RL RLT L  +  ++ELN+L  EI    +
Sbjct: 480 ----------------SFKLSEIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYEN 523

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S  +L+ +I  EL  +K      RRT I       ++DED I  +++ +T+S  GYV
Sbjct: 524 ILNSHEKLIDLIVSELEEIKARFGDERRTIINTSDYGIIKDEDLIPNKNIAITLSKNGYV 583

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR PL+ +R+Q+RGG G        +D V  +    THT +L F+S   VYK +  ++P 
Sbjct: 584 KRTPLTDFRSQKRGGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPE 643

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN +++++ E++ +++   E    +   Y++  TK+G  ++  +  + +I
Sbjct: 644 LSRQAKGVPFINFINIDKKEKVVSLLSVEEY---FEGTYLLTITKNGIAKKTSIEAYKRI 700

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +GK A+ L   DE+  V T   E+ +++    G+ V F    IR   GR + GV  + 
Sbjct: 701 QSNGKFALSLKEDDELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPM-GRTASGVIAMK 759

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K ++V+ +                                                  
Sbjct: 760 LDKKERVVGV-------------------------------------------------- 769

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + +++L++ +KGFGK+T    +R+S+R+ KG+ + +V    + G L  V  V 
Sbjct: 770 ---GKSSEGKYVLSIGDKGFGKKTELESYRLSHRNVKGVISLNVK---KAGKLNYVGIVK 823

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             ++ I ++++G  IR  +N++   SR TKGV + +    + + S+  I   +I +E E 
Sbjct: 824 GYEEAIFLTNEGIAIRTELNQVSETSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEK 883

Query: 909 T 909
           +
Sbjct: 884 S 884



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 58/436 (13%), Positives = 146/436 (33%), Gaps = 37/436 (8%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + +T+  LN  +        +  +    ++++ +I        AR    +R+   +    
Sbjct: 504 IEKTQDELNALKQEIAGYENILNSH---EKLIDLIVSELEEIKARFGDERRTIINTSDYG 560

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +I    D       +  + LS+     +    L       R  +    +    +      
Sbjct: 561 IIK---DEDLIPNKNIAITLSKN--GYVKRTPLTDFRSQKRGGVGVYTHKTYADDDVDSI 615

Query: 490 ILSSRSRLLGIIKQELLSVKDE-LDTPRRTRIVEGLLDMEDEDCIVREDMV--------- 539
           + +     + +        K      P  +R  +G+  +   +   +E +V         
Sbjct: 616 LTTHTHTDILVFTSSAKVYKIRAHQIPELSRQAKGVPFINFINIDKKEKVVSLLSVEEYF 675

Query: 540 -----VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                +T++  G  K+  +  Y+  +  GK    + ++++D +  +  +    SV+  ++
Sbjct: 676 EGTYLLTITKNGIAKKTSIEAYKRIQSNGK--FALSLKEDDELFKVITIDDEDSVIIGAN 733

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G V       +      A   + +  + L++ ER            S    YV+     
Sbjct: 734 NGKVVHFDSKEIRPMGRTA---SGVIAMKLDKKER------VVGVGKSSEGKYVLSIGDK 784

Query: 655 GNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           G  ++ +L  +     N  G I++ +    ++  V       + +  T  G  +R  ++ 
Sbjct: 785 GFGKKTELESYRLSHRNVKGVISLNVKKAGKLNYVGIVKGYEEAIFLTNEGIAIRTELNQ 844

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +     R + GV+ I+L   D + S+AI+     D +        +S+   L   +    
Sbjct: 845 VSE-TSRGTKGVKLITLKDKDYIASIAIINTEKIDEEIEKSLELEVSSGPVLDLENNNYG 903

Query: 773 TSLKNDSSVEGNISEE 788
              + +   + +   +
Sbjct: 904 IQEEIEDKQDEDQETD 919


>gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 825

 Score =  796 bits (2055), Expect = 0.0,   Method: Composition-based stats.
 Identities = 362/828 (43%), Positives = 511/828 (61%), Gaps = 35/828 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+   I    I  EM++S++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EEQSSQIKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+S+R +L++G GNFGS+DGD  AA R
Sbjct: 63  PYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL DL KDTVDF PNYDG   EPVVL +RYPN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG  A+I NPDI    LME I+GPDFPT   ++G +GI+ AY TGRGS+ 
Sbjct: 183 IPPHNLREVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVMGHSGIRQAYTTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     + +I+V E+PYQV KA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRARAIIEDNG-GKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIEL+R  + +V+LN LY+ T +QS F +NM+AL   +P+   L  +L  ++  + E++
Sbjct: 302 VVIELRRDVNPNVVLNNLYKQTQMQSTFGINMLALVNREPKVLNLRDMLYHYLQHQIEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  L+ R         
Sbjct: 362 RRRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL RD I  E   L  +I E   
Sbjct: 413 -----------------FSLSLEQAQAILDMRLQRLTGLERDKIEAEYAELLAKIAEYKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II  EL  +K+     RRT I  G  ++ DED I RED++++++H GYVK
Sbjct: 456 ILADEQLVLDIISTELNEIKERFGDDRRTEITIGEDEILDEDLIPREDVIISITHSGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P++ YR+QRRGG+G  G+  +D+DFV  LF+ +TH  +LFF+  G VY+ K + +P  
Sbjct: 516 RLPVTTYRSQRRGGRGVIGMDTKDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG  +IN+L + QGE +  ++P    +   N+ Y+ FAT+ G V++  L D+  I 
Sbjct: 576 SRTARGTPIINLLQIEQGEVVNAVIPVEAFD---NDKYLFFATRQGVVKKTPLDDYANIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D+++SV+      +I++ T  G  +RFP   +R   GR++ GV+GI L
Sbjct: 633 KVGLIAISLREDDDLISVKLTDGNQEIIMGTSQGMSIRFPEQDVRSM-GRSATGVKGIQL 691

Query: 730 AKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + D+VI M IV    D        Y K        I     +     N +   G I   
Sbjct: 692 DEEDKVIGMEIVHPENDVLIVTSKGYGKRTPVNEYRIQSRGGKGIKTLNVTDKNGTIVGL 751

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           +  E    ++ ++ ++  G   RTS        R+ +G++  ++ + +
Sbjct: 752 KVVE---NDEDLMIMTASGTMIRTSMDGISTMGRNTQGVKLINIREDD 796


>gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
 gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359]
          Length = 803

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/887 (39%), Positives = 529/887 (59%), Gaps = 91/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  I DE+ +SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G+  N    K A
Sbjct: 5   LINRPIEDELVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMAT+IP HNL
Sbjct: 125 TRLAEEMLEDIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  V +ID+P+  ++ LM+ I+GPDFPTG +++  + +KN Y  GRG IV+RG  H
Sbjct: 185 SETVDALVYLIDHPEASVEELMQFIKGPDFPTGGIVVNGSELKNVYEEGRGRIVVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E+     ++IV+TEIPY V+KA ++E+IA+LV++   + + ++RDESD++G RVVIE+ 
Sbjct: 245 VEEGKR-LKRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           +  + D+I+N LY+ T+LQ  F+V M+ ++  K P    L G+L+AF+  R EV+ RR +
Sbjct: 304 KDTNEDIIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAE 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   K   RAHV+ GL  A   +  VV I+R S + E+AR  LM+               
Sbjct: 364 YEYEKFTKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ +SE Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEISEEQAKAILDMRLSRLTSLEIENLQNEYSDLVKKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K+    PRRT I +  L  + E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVREIMKKEFLYLKERYGDPRRTEITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGGKG +   + ++D V  + +    +S LF ++ G  Y  K +++       R
Sbjct: 518 SYRSQRRGGKGITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673
           GK +   L+L   ERI  ++P            +V  TK G ++R  L +F       G 
Sbjct: 578 GKHISAFLNLEDTERIVALVPLNG-----KGKDLVIVTKSGKIKRTSLEEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A++++  DEI+S    T E + +++ TKLG  +RFP+S +R   GRN+ GV+ I L  G
Sbjct: 633 RAIRIEPGDEIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRM-GRNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +V                                                   
Sbjct: 692 DEVVSMDVVPS------------------------------------------------- 702

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +E  ILTV+EKGFGKRT    +R+  R G G+R    S +N+ G +VAV  V  +++
Sbjct: 703 ---EEGEILTVTEKGFGKRTPVQLYRVQKRGGTGLRNI--SDVNKTGHVVAVRYVKGDEE 757

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR+PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 758 IVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 803



 Score =  116 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 95/245 (38%), Gaps = 15/245 (6%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    R+     +L    E L V    +E+ ++  +  G     P+++ R    R   
Sbjct: 473 ERYGDPRRTEITDEELRYDVEELIV----EEDVVITLSHKGYLKSTPLNSYRS-QRRGGK 527

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781
           G+    L++ D+V  + +  +  +          ++    ++ + G       +    ++
Sbjct: 528 GITVSKLSEDDEVEFVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNL 587

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839
           E          L  K + ++ V++ G  KRTS  +F    SNR   G+RA  +       
Sbjct: 588 EDTERIVALVPLNGKGKDLVIVTKSGKIKRTSLEEFENATSNR---GVRAIRI---EPGD 641

Query: 840 ALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V+        + +++ +  G +IR PV+++R   R   GV        + VVS++ + 
Sbjct: 642 EIVSARVSTSEKETLVVATKLGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVP 701

Query: 899 ESEIV 903
             E  
Sbjct: 702 SEEGE 706


>gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 893

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/929 (37%), Positives = 511/929 (55%), Gaps = 102/929 (10%)

Query: 1   MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++ +         +D    + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MSDEVEEIIGNEGLTDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G      + K +R+ GEVMG YHPHG++AIYDALAR+ Q WS+R  L+ G
Sbjct: 61  RRVLYAMYDGGYRPTASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L AR+PN
Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMAT IP HNL E+  G    +++PD   + L++     I GPDFPTGA
Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR
Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    
Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP
Sbjct: 360 PRTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E Q  AIL L+L RL  L
Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I+ E   L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M 
Sbjct: 454 ERLKIQQESEELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + +      ++
Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELQDYD---QADFL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L        DE++S    +   D+LL +  G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF      +R   GR + GV G+   + D +++M +V  +  D D            
Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREDDYLLAMDVVDPSWQDAD------------ 737

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +  V+E G+ KRT+  D+ +  
Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G++  ++ +    G LV     +  D+++ +   G ++R  V E+    R T+GV 
Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                  +R+++V R  E ++ +  ++ +
Sbjct: 818 FAKPDAGDRIIAVARSTERDMEEAVDAAD 846



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 98/271 (36%), Gaps = 14/271 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
           D +V  +  G VK+  LS Y + R GG     +   ++    +L       T   +L  S
Sbjct: 628 DFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVS 687

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +          P  R  + +  +   +      ++     + SW +  +   T+
Sbjct: 688 HAGQSLRFHADD-DTLRPTGRATSGVTGM---RFREDDYLLAMDVVDPSWQDADLFVVTE 743

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709
            G  +R  + D+  +   G + +K+ +  E    ++        +++L     G+ VR  
Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +    GR + GV       GD++I++A     D +           SA     +G+ 
Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIAVARSTERDMEEAVDAAD-SAPSADSADSTGEE 860

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +  T+ + ++      S      L+  E  +
Sbjct: 861 QAPTTPEGETGDSPADSAADTVALEDNESEV 891


>gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
 gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275]
          Length = 816

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/826 (42%), Positives = 519/826 (62%), Gaps = 32/826 (3%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE+    I  + I  EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ M ++ +  +
Sbjct: 3   DEKNTSRILPIEIASEMKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R+ L++G GNFGSVDGD PAA 
Sbjct: 63  KPYRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  LL D+ K+TVDF PN+D S +EP+VL AR+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEARMSKLSMELLRDIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D  V +ID PD D++ LM  ++GPDFPTGA+I+G   IK AY TGRG I
Sbjct: 183 SIPPHNLGEVIDATVHLIDRPDADVEELMGYVKGPDFPTGAIIMGTESIKEAYRTGRGKI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE+    ++QIVVTEIPYQVNKA ++E+IAELV++K+I  I+DLRDES+R G 
Sbjct: 243 KVRARAEIEELPKGKQQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGM 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR  +A++ILN LY+++ ++   SV M+AL   +P+   L  +L  ++  +++V
Sbjct: 303 RIVIELKRDVNANIILNNLYKHSQMEETISVIMIALVNGEPKCLNLKEVLHYYIEHQKDV 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY LNKA  RAH+L GL IA+ N+D V+  IR S     A+ +L++R        
Sbjct: 363 VTRRTKYELNKAEARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVER-------- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q +AILE+RL RLTGL R+ I  E + L  +I E  
Sbjct: 415 ------------------FGLTEIQAQAILEMRLNRLTGLEREKIDAEYDELMKKIAELK 456

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S   LLG+IK E++ +K++    RRT I     +++  D I  E++ +T++H GY+
Sbjct: 457 EILASEEVLLGVIKDEIIEIKNKYTDERRTEIQHAEGEIDVIDLIDEEEIAITLTHFGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P   YR+Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V++   + +P 
Sbjct: 517 KRLPADTYRSQKRGGRGISALTTREEDFVKHLISTTTHSRLLFFTNRGRVFRLNAYEIPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  QA+G A++N+L L  GE+I T++     +    N Y++ ATK G V++ K+SDF  I
Sbjct: 577 GKRQAKGTAIVNLLQLGPGEKIATLIDV---DGKEENKYLLIATKKGMVKKTKISDFKNI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N+SG I++ L   DE++ V+    E D++L T+ G  +RF    +R   GR ++GV+GI+
Sbjct: 634 NKSGLISIGLKEGDEVIGVKLTDGEQDVMLVTRNGMSIRFSEKDVRGM-GRTAMGVKGIT 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD V+SM++                  +      S             ++       
Sbjct: 693 LGEGDTVVSMSLASEGTDMLVVSENGFGKRTDLEEYRSQI--RAGKGIKTYNISEKTGSI 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
              E+  ++  ++ ++  G   R    +  I  R   G++  +V +
Sbjct: 751 VGAEMVAEDDEMMIINSDGVLIRIKVNEISIFGRVTSGVKLMNVDE 796


>gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 893

 Score =  795 bits (2054), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/929 (37%), Positives = 513/929 (55%), Gaps = 102/929 (10%)

Query: 1   MTEHIISSDEEE-------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++ +     +E        + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVH
Sbjct: 1   MSDEVEEIIGDEGATSIAVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M   G      + K +R+ G+VMG YHPHG++AIYDALAR+ Q WSLR  L+ G
Sbjct: 61  RRVLYAMYDGGYRPTASFSKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFG+     PAA RYTEC++   A  +L D+ +D+VDF+ NYDG  QEPV+L +R+PN
Sbjct: 121 QGNFGTPGNLGPAAPRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGA 229
           +LVNG  GIAVGMAT IP HNL EV  G    +++PD   + L++     I GPDFPTGA
Sbjct: 181 LLVNGSEGIAVGMATRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR GI++AY TGRGSI  R V ++E+    R+ +VVTE+PYQVN   + +KIA+LVR
Sbjct: 241 TILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVR 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  F  NM+AL    
Sbjct: 300 DGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTQLQDNFPANMLALVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G ++ +V+ + +V+VRR+++ L KA +R H+L GL  A+  LD V+ +IR SP
Sbjct: 360 PRTLSLDGFVRHWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  LM                          G + + E Q  AIL L+L RL  L
Sbjct: 420 TTEEARTGLM--------------------------GLLDVDEAQAEAILSLQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            R  I+ E + L   +K+  +I++S  R  GI+  EL  + ++    RRTRIV    +M 
Sbjct: 454 ERLKIQEESDELRARVKDLREIIASPERQRGIVSDELAEIVEKYGDERRTRIVPFDGEMS 513

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ED I  ED+VVT++  GY KR     YR+Q RGGKG  G  +R++D V   F+ +TH  
Sbjct: 514 MEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHRGGKGIRGATLREDDVVDHFFVTTTHRW 573

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +LFF++ G VY+ K + LP G   ++G+ + N+L+   GE I  +M   + +      ++
Sbjct: 574 LLFFTNYGRVYRAKGYELPEGGRDSKGQHVANLLAFQPGEEIAQVMELRDYD---QADFL 630

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLG 703
           V AT+ G V++ +LS++      G IA+ L        DE++S    +   D+LL +  G
Sbjct: 631 VLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVSHAG 690

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           Q +RF      +R   GR + GV G+   +GD +++M +V  +  D D            
Sbjct: 691 QSLRFHADDDTLRP-TGRATSGVTGMRFREGDYLLAMDVVDPSWQDAD------------ 737

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +  V+E G+ KRT+  D+ +  
Sbjct: 738 --------------------------------------LFVVTEGGYAKRTNVVDYPVKG 759

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G G++  ++ +    G LV     +  D+++ +   G ++R  V E+    R T+GV 
Sbjct: 760 RGGLGVKVANLVEA--RGNLVGALVTDSGDEVLCIMASGKVVRSAVVEVSRTGRTTQGVT 817

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                  +R+++V R  E ++ +  ++ +
Sbjct: 818 FAKPDAGDRIIAVARNTERDMEEAVDAAD 846



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 16/272 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
           D +V  +  G VK+  LS Y + R GG     +   ++    +L       T   +L  S
Sbjct: 628 DFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQDEDGNYDELVSARLLSTGQDLLLVS 687

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +          P  R  + +  +   +G+    ++     + SW +  +   T+
Sbjct: 688 HAGQSLRFHADD-DTLRPTGRATSGVTGMRFREGD---YLLAMDVVDPSWQDADLFVVTE 743

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709
            G  +R  + D+  +   G + +K+ +  E    ++        +++L     G+ VR  
Sbjct: 744 GGYAKRTNVVDYP-VKGRGGLGVKVANLVEARGNLVGALVTDSGDEVLCIMASGKVVRSA 802

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +    GR + GV       GD++I+  +  + + D +E +       +     S D 
Sbjct: 803 VVEV-SRTGRTTQGVTFAKPDAGDRIIA--VARNTERDMEEAVDAADSAPSAESADSADQ 859

Query: 770 EEITSLKN-DSSVEGNISEERCQELKLKEQFI 800
                    D+      S      L+  E  +
Sbjct: 860 ARADVPPEGDTGDSPADSAADTVALEDNESEV 891


>gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45]
 gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45]
          Length = 919

 Score =  795 bits (2053), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/904 (38%), Positives = 529/904 (58%), Gaps = 86/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+G GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVATLMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALARNPEITIAEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  +ADLRDES+R G R
Sbjct: 309 VRSIAKIEHLHNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ LNKA+DR H+L GL +AV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLKFDLNKAQDRMHILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSAR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+  + 
Sbjct: 480 -----------------FNLSEKQTKAIVDMRLGRLTGLAIDSMIEEMKNLSAEIERIIS 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           ILS +  L  +I  EL  +K++    RRT I +     ++DED I + D+V+T S  GYV
Sbjct: 523 ILSDKKLLTELIIDELTEIKNKFADDRRTVIDKNLSASIDDEDLITKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D +  +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            + Q++G + INI+   + +    ++     +   +N Y+  ATK G +++  LS+F  I
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDNKYLFTATKLGIIKKTSLSEFQII 702

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++       +  +LL     + V+F  +  R  + R + GV+GI+
Sbjct: 703 NINGKRAFNLKENDELIRASIINDDELVLLANDKQRIVKFHSNEFRALS-RIATGVKGIT 761

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA  +  IS +     +                                           
Sbjct: 762 LADDETCISASSSSEGE------------------------------------------- 778

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILT+   GFGK T    FR+ +R GKG+   +    ++ G LV    VN
Sbjct: 779 ----------LILTIGRNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFARFVN 825

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI--VDEA 906
            +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE ++      +DE 
Sbjct: 826 PHDEILMITTSGFTIRIPIKDINQTGRATKGVKLINLKKKEQIQAVEIVKLENDSSIDET 885

Query: 907 ESTE 910
              E
Sbjct: 886 VDDE 889


>gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
 gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B]
 gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B]
          Length = 837

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/844 (41%), Positives = 511/844 (60%), Gaps = 35/844 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              E     V I++EM+  Y+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   NNNEGKTLPVDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCARI G+V+GKYHPHG++++YDAL R+AQD+S+R  L++G GNFGSVDGD  AA R
Sbjct: 62  PHRKCARIVGDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A+ ++ D+ K+TVDF PNYDG  QEP V+ +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMDKMANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+DG   +I+NP+  +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +V
Sbjct: 182 IPPHNLTEVIDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIMGKSGIREAYETGRGKVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+    R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR G R
Sbjct: 242 VRANATIEEDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKR A+ +VILNQLY++T LQ  F + M+AL   +P+   L  +L  ++ F++EV+
Sbjct: 301 IVIELKRDANPNVILNQLYKHTKLQDSFGIIMLALVDNQPKVLNLKEVLVHYLNFQKEVI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+DEV+ IIR S +   A+  L +R         
Sbjct: 361 TRRTQFELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQER--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q+ AI+E+RL  LTGL R  I +EL+ L   I +  +
Sbjct: 412 -----------------FALSEKQSTAIVEMRLRSLTGLERQKIEDELSELMALINKLKE 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++ + +L II+ EL  +K      RRT I     D+  ED I    +VVT++  GY+K
Sbjct: 455 ILANEALILNIIRDELNEIKGRFGDERRTAIEASQNDINIEDLIQEHKVVVTLTRAGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+  S Y AQ+RGGKG      +++D V ++F+ STH  +LFFS+ G VY  K + +P  
Sbjct: 515 RIAESTYSAQKRGGKGIQAATTKEDDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  +IN+L L   E+I  ++   E E    + Y+VF TK G +++  L DF  I 
Sbjct: 575 GRTAKGTNVINLLLLRPEEKIQAVITLSEFE---KSQYLVFGTKKGIIKKTTLEDFSNIR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++SV   + E+ I++ T+ G  +RF    +R   GR + GV+GISL
Sbjct: 632 KNGLNAVGLREDDELISVRLSSGEDQIIMVTQNGYSIRFKEEDVRPM-GRTATGVKGISL 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+SM IV  +              +        +   +  +     V     +  
Sbjct: 691 RDEDNVVSMEIVDESMDILVVSENGYGKRTPIGEYKCQNRGGMGII--TYKVSEKTGKVV 748

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   E  I+ ++      R +S +   + RS  G+     +   ++  L     ++D
Sbjct: 749 AATMVNDEHEIMIINSADIVIRINSKEISTTGRSAMGVTLMRNNDETKV--LAIAKVISD 806

Query: 850 NDQI 853
           +++I
Sbjct: 807 DEEI 810



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/333 (19%), Positives = 115/333 (34%), Gaps = 64/333 (19%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
              ++    +  VV  T+ G ++R   S +    R   G  A      D + ++   +  
Sbjct: 492 INIEDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTKEDDIVENIFVTSTH 551

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV----------------------------- 724
           + IL  +  G+        I   AGR + G                              
Sbjct: 552 DHILFFSNFGRVYTLKGYEI-PEAGRTAKGTNVINLLLLRPEEKIQAVITLSEFEKSQYL 610

Query: 725 -----RGI--------------------SLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                +GI                     L + D++IS+ +    D              
Sbjct: 611 VFGTKKGIIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLSSGEDQIIMVTQNGYSIRF 670

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
            +  +                 E N+      E+  +   IL VSE G+GKRT   +++ 
Sbjct: 671 KEEDVRPMGRTATGVKGISLRDEDNVV---SMEIVDESMDILVVSENGYGKRTPIGEYKC 727

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            NR G GI    VS+  + G +VA   VND  +I++++    +IR+   EI    R+  G
Sbjct: 728 QNRGGMGIITYKVSE--KTGKVVAATMVNDEHEIMIINSADIVIRINSKEISTTGRSAMG 785

Query: 880 VVIFSTAKDERVVSVERI--RESEIVDEAESTE 910
           V +     + +V+++ ++   + EI D  E  E
Sbjct: 786 VTLMRNNDETKVLAIAKVISDDEEIEDLQEHNE 818



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 97/235 (41%), Gaps = 21/235 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-----IRVFAGRNSVGVRGISLA 730
           + LD+ DE++S+   ++  +     K     RF +S      I     R+  G+    + 
Sbjct: 383 IALDNIDEVISIIRSSKSTN---EAKERLQERFALSEKQSTAIVEMRLRSLTGLERQKIE 439

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                  ++ ++       E +     +    R    + +     +  +++E + ++   
Sbjct: 440 DE-----LSELMALINKLKEILANEALILNIIRDELNEIKGRFGDERRTAIEASQNDINI 494

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV-AVFPVND 849
           ++L  + + ++T++  G+ KR +   +    R GKGI+A    +      +V  +F  + 
Sbjct: 495 EDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTKE----DDIVENIFVTST 550

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
           +D I+  S+ G +  +   EI  A R  KG  + +      +E++ +V  + E E
Sbjct: 551 HDHILFFSNFGRVYTLKGYEIPEAGRTAKGTNVINLLLLRPEEKIQAVITLSEFE 605


>gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
 gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873]
          Length = 842

 Score =  795 bits (2052), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/844 (40%), Positives = 517/844 (61%), Gaps = 36/844 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  I  + I+ EMQ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K 
Sbjct: 2   NNQGNIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R  L++G GNFGSVDGD  AA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K    LL D+ K+TVDF PN+DG  +EP VL +R+PN+LVNG  GIAVGMATNI
Sbjct: 122 TEAKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++G    IDNP+I +  LM  I+GPDFPT  +I+G++GI+ AY TGRG +++
Sbjct: 182 PPHNLTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIVGKSGIRKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    + +IVVTEIPYQVNKA ++E IA LV++KRI  I+DLRDESDR+G R+
Sbjct: 242 RSRAEIEEDK-GKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRI 300

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+V+LNQLY++T +Q  F + M+AL   +P+  +L  +L+ ++ F+EEV+ 
Sbjct: 301 VIELKRDANANVVLNQLYKHTKMQDSFGIIMLALVNGEPKVLSLKEVLRHYIKFQEEVIT 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L+KA  RAH+L GL IA+ ++DEV+R+IR S     A+  LM +          
Sbjct: 361 RRTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSK---------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q  AIL+++L RLTGL R+ I  E   L   +K    I
Sbjct: 411 ----------------FGLSEKQATAILDMKLQRLTGLEREKIEEEYAKLMENVKYFRQI 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVK 549
           LS +S LL IIK EL  +K +    R++ I++   +  + ED I  +D+V+T++H GY+K
Sbjct: 455 LSDKSLLLKIIKDELNEIKTKYGDERKSEIIQDEGNDIDIEDLIEEKDVVITLTHAGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+  Y AQ+RGG+G   +  +++DFV  +   STH ++LFF++LG VY+ K +++P  
Sbjct: 515 RLPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDNILFFTNLGRVYQLKAYQIPEA 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A+G  LIN++ L++ E+I  ++   E +    + +++  TK G +++  L  +  I 
Sbjct: 575 GRTAKGMNLINLIPLDKEEKIQNVIYLKEFK---EDTFLIMGTKKGLIKKTSLDKYASIR 631

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ L   DE++SV   T + +++  TK G  +RF  + +R   GR + GV+ I+L
Sbjct: 632 KNGLNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFDENDVRPM-GRTATGVKAITL 690

Query: 730 AKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
            + D+V+SM +     D        Y K     +  +     +       S   G +   
Sbjct: 691 REDDEVVSMEVASENRDLLVVSENGYGKRTHIDQYTLQRRGGKGVITYKISEKTGLLIGA 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R  E K +   ++ +++ G   R +  D   ++R+  G+         ++  +  V    
Sbjct: 751 RFVEDKDE---LMLINDSGIAIRINVSDISTTSRNAMGVTLMRTVNNEKVVTMAKVNISE 807

Query: 849 DNDQ 852
             D 
Sbjct: 808 IEDD 811



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/421 (12%), Positives = 144/421 (34%), Gaps = 35/421 (8%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            +       +      +++   +++II+   N    +    ++S    D     +  D  
Sbjct: 439 EEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIKTKYGDERKSEIIQD-----EGNDID 493

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
              +  +  + ++      I  L +   +   R     +  +   +      I +S    
Sbjct: 494 IEDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAMTTKEDDFVEHIITASTHDN 553

Query: 498 LGIIKQELLSVK---DELDTPRRTRIVEGLLDMEDEDCIVR-----------EDMVVTV- 542
           +          +    ++    RT     L+++   D   +           ED  + + 
Sbjct: 554 ILFFTNLGRVYQLKAYQIPEAGRTAKGMNLINLIPLDKEEKIQNVIYLKEFKEDTFLIMG 613

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G +K+  L  Y + R+ G   + + +R++D +  + + +   +V++ +  G+  +  
Sbjct: 614 TKKGLIKKTSLDKYASIRKNG--LNAINLREDDELISVRVTTGDCNVIYATKNGYAIRFD 671

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   I +   ++             E +  N  ++  +++G  +R  +
Sbjct: 672 ENDVRPMGRTATGVKAITLREDDE---------VVSMEVASENRDLLVVSENGYGKRTHI 722

Query: 663 SDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             +    R GK  +     ++    +       +++++L    G  +R  +S I     R
Sbjct: 723 DQYTLQRRGGKGVITYKISEKTGLLIGARFVEDKDELMLINDSGIAIRINVSDI-STTSR 781

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N++GV  +     ++V++MA V  ++ + D               +S +       +N  
Sbjct: 782 NAMGVTLMRTVNNEKVVTMAKVNISEIEDDCNNICTSEDEEGNNDLSENNSVEIDEENIQ 841

Query: 780 S 780
            
Sbjct: 842 E 842


>gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511]
 gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511]
          Length = 838

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/898 (39%), Positives = 501/898 (55%), Gaps = 84/898 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +    + + + + +V I DEM+ SY+ YA++VI GRA+P + DGLKPVHRRIL+ M
Sbjct: 1   MSSDVPDPTDVQARAVENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + I GE MG YHPHG++AIYD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 61  HEMGVSSGSSHRKSSSIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSM 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDP AA+RYTE R+   +  LL D+ KDTVDF  NYD   QEP VL A +PN+LVNG  
Sbjct: 121 DGDPAAAQRYTEARMSSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM+TNIP HNLGEV+D  + +ID+PD  ++ LM+ ++GPDFPTGA I+GR  I +A
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIVGRDAIYSA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R    +E+    RE+IVVTE+P+Q NKA ++E+IAE V E  I  I+DLR
Sbjct: 241 YKTGRGRIRVRAEFEVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKRGA+ +V+ N+L     L+  F V  +AL   +P   +L   L+ 
Sbjct: 301 DESDRDGVRIVIELKRGANTEVVKNRLLE-NHLERTFGVINLALVDGQPRVLSLKETLEE 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +VA R EVV RR++Y L +A DRAH+L G   AV N D+VV +IR S     A+  L   
Sbjct: 360 YVAHRREVVRRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENL--- 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q   I+ ++L  LT +   +I  E   +
Sbjct: 417 -----------------------QDAYDFSQDQADHIVRMQLGSLTSMETTEIEEEYEEV 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+    IL S   LL +IK EL  +K+E    RRT I+E    +  ED I  E++ V
Sbjct: 454 QAEIERLNAILESEEELLSVIKDELRGIKEEYGDERRTSIIEDQGTVTHEDLIPEEEVFV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   YVKR+P+  +  Q RGGKG  G  +++ D V+ +F  +TH  +L F++ G VY+
Sbjct: 514 VMTEDDYVKRMPIDQFDPQGRGGKGIIGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQ 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P     ARGK+ +NIL L+ GE IT I+         +  +V  AT HG V+R 
Sbjct: 574 LKTYEIPEMGRTARGKSAVNILDLDPGEDITAIVDTDAFG---DGEFVTMATHHGYVKRT 630

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
              +F  I  +G IA  L+  DE++ VE      D+++ T+ G  +RF    +R   GRN
Sbjct: 631 GGEEFDNIRSTGIIAADLEEGDELVDVEVTDGSQDLVIATEGGMTIRFDEDEVRAM-GRN 689

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV GI L   D V  +     AD                                   
Sbjct: 690 ARGVNGIKLQDDDAVAGLVATDEAD----------------------------------- 714

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                            Q +LTV+  G+GKRT   ++R  +R GKG+        N  G 
Sbjct: 715 ----------------GQALLTVTRNGYGKRTRLSEYRTQSRYGKGLIDIKTGDRN--GP 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + AV  V+D+DQ++++S+ G ++R  V+EI    R T GV++      + V SV+ I 
Sbjct: 757 VTAVKAVDDDDQLVMMSEDGQIVRTRVDEISTVGRNTMGVIVMDVEDGDAVASVDDIP 814


>gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
 gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405]
          Length = 815

 Score =  794 bits (2051), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/896 (38%), Positives = 520/896 (58%), Gaps = 87/896 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
             +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +
Sbjct: 5   QTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSS 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
               KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA 
Sbjct: 65  GPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAY 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMAT
Sbjct: 125 RYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I
Sbjct: 185 NMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKI 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
           ++RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G
Sbjct: 245 LVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +
Sbjct: 305 LRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVD 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S +P+TA+  LM+R       
Sbjct: 365 VVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                  +VQ +AI++++L RLT L  +D+R EL  L + I   
Sbjct: 418 -------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
            D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLG
Sbjct: 459 KDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +
Sbjct: 519 YIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEI 578

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S  +RG  + ++LS++  E IT ++   E +   +  Y++ AT  G V++    +F 
Sbjct: 579 QEASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFA 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                G IA+KLD  D+++S      +++I+L T+ GQ +R     IR   GR+S GV G
Sbjct: 636 NAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L+  D++     V                                             
Sbjct: 695 IKLSSEDELTGALRVTE------------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +L ++E G+GKR    +F    R   G R   +S+  + G +V +  
Sbjct: 712 ----------NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSE--KTGEVVGLLT 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           V D+D+++ ++ +G  IR+ V+ +    R+ +GV I      + ++ ++ +   E 
Sbjct: 760 VFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDEE 815


>gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 839

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/907 (37%), Positives = 515/907 (56%), Gaps = 88/907 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M+N Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   DEHIFDKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  DL KDTVDF PN+D + +EP VL +RYPN+L NG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +IDN      D  ++ +++I++GPDFPTG  I+G+ GI+ AY T
Sbjct: 182 NIPPHNLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTIIGKLGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR  I +R V++IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DLRDES
Sbjct: 242 GRAKIKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+ IEL+R  + +++LNQLY++T LQ  F V M+AL   +P+   L  +LK ++ 
Sbjct: 302 DREGMRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLALVDNQPKVLNLYDMLKYYLL 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTK+ LNKA +RAH+L GL IA+ N+D V+ IIR S N + A+  L+     
Sbjct: 362 HQEEVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAE--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AI+++RL  LTGL R  +  EL  L  +
Sbjct: 419 -----------------------FALSEAQAQAIVDMRLRALTGLERSKLEAELKELHEK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           IKE   IL+ +  LLG+IK E+  + D+    RRT I     D+  ED I  E  V+  +
Sbjct: 456 IKEYKAILADKKLLLGVIKNEISEIADKYGDDRRTSIGYDEYDISMEDLIPDEPCVIART 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGYVKR+    +++Q RGGKG  G+   D+D++ DLF+ ++H  + FF++ G  YK K 
Sbjct: 516 NLGYVKRMTPDNFKSQHRGGKGIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG A+IN+L L  GE IT ++P   D                        
Sbjct: 576 YEIPEASRTSRGTAIINLLQLAPGETITAVVPVKIDTLQ--------------------- 614

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                                         + + + TK G   + P   ++ FA     G
Sbjct: 615 ----------------------------DTDYLFMATKKGIVKKTP---VKEFANIRKTG 643

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           ++ I+L + D++I    V   D   +  +  M     + +         +++        
Sbjct: 644 IQAINLREDDELIE---VKLTDDQAEILMVTMLGQCIRFKETDVRPTGRSAMGVIGMSLM 700

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +  E    ++  +   +L VSE G GKRT   ++ + +R GKG++   +++  + G +V 
Sbjct: 701 DEDEVVGVQVSTQGDTMLIVSENGMGKRTDIDEYTVQHRGGKGVKCYKITE--KTGNVVG 758

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V+D+ +++L++ +G +IR+  ++I    R T GV + +  +  +V ++ ++R+    
Sbjct: 759 AKAVDDSREVMLITTEGIIIRLQCSDISNLGRITSGVKLINLDEGIKVATIAKVRKQPAD 818

Query: 904 DEAESTE 910
           ++ +  E
Sbjct: 819 EDGKDAE 825


>gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 832

 Score =  793 bits (2049), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/901 (39%), Positives = 518/901 (57%), Gaps = 86/901 (9%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   + +  E     I  ++I +EM+N YL YA++VI+GRA+PD+RDGLKPVHRR L+
Sbjct: 1   MSDENNTPENGEINHGNIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +    NK ++K AR+ G+V+GKYHPHG++A+Y+ L RMAQD+S+R +L++GQGNFG
Sbjct: 61  AMYSLNNYHNKPFLKSARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA RYTE R++K +  +L DL KDTVD++PNYD S +EP VL  + PN+LVNG
Sbjct: 121 SIDGDAAAAMRYTEIRMKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL E++     +IDN D+ ++ LM+ I GPDFPT   I G  GIK
Sbjct: 181 SSGIAVGMATNIPPHNLTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSIHGTEGIK 240

Query: 239 NAYATGRGSIVIRGVSHIEKT-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +AY TGRG I IR    IE     +RE+IV+TE+PYQVNKA ++EKIA+LV  K I  I+
Sbjct: 241 SAYHTGRGIIQIRAKVDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGIS 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDES R+G RVVI+LK+G  A VI+N+LY+ T LQ  F +  ++++   P+   L  +
Sbjct: 301 DIRDESSREGIRVVIDLKKGEIASVIVNRLYKATQLQVSFGIIFLSISNGSPKVMNLKEM 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+  R EVV+RRT + L KA++RAH+L GL +AV N+DEVV I++ S  P  A+ +L
Sbjct: 361 LECFIDHRREVVIRRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKL 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           + R                            LSE+Q++AIL++RL RLTGL RD I  + 
Sbjct: 421 ISR--------------------------FSLSEIQSQAILDMRLQRLTGLERDKIIADY 454

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            ++  EI    +IL S   + GIIK E   + +     RRT IV    +++ ED +  ED
Sbjct: 455 EAIMKEIARLEEILGSEDLIRGIIKTEFQEINENYGDERRTAIVAKADEIQIEDLVKNED 514

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++VT++H GY+KR+ +  YR Q+RGGKG  G    DEDF TD+F  +TH+++LFF++ G 
Sbjct: 515 VLVTITHKGYIKRMTMDTYRTQKRGGKGVKGASNADEDFFTDIFTANTHSTILFFTNRGS 574

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V+ +KV+ +P G+  A+G+ + N++ +  G++I                           
Sbjct: 575 VFSKKVYNIPEGTRTAKGRNIANLIPVPPGDKIKE------------------------- 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                             M +   DE        +   ++  T+ G   +  ++      
Sbjct: 610 -----------------IMCIPPEDER-------EGKYLMFATEKGLVKKSALTDYNNIK 645

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                G+R I +  GD V S   V  +D   D  +C       +            S   
Sbjct: 646 Q---SGLRAIKVQDGDSVCS---VRVSDGTKDVLLCSTSGKIIRFDESDARPMGRVSQGV 699

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                 +       EL      IL+++E G+GKRT++  +R   R GKGI A  ++  N 
Sbjct: 700 KGINIDDDERIIGMELIDDSVEILSITENGYGKRTAASQYRKQTRGGKGILAMRLTDKN- 758

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +  + PV+D D +++++DKG ++R  ++ I +  RAT+GV I    + E VVSVE+I
Sbjct: 759 -GEIKQIKPVSDKDDLMVITDKGQVVRTKISGISLMGRATQGVRIIKLKEGESVVSVEKI 817

Query: 898 R 898
            
Sbjct: 818 V 818


>gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 921

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/892 (38%), Positives = 509/892 (57%), Gaps = 91/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   +  + +  EMQ SY+ YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ +
Sbjct: 32  ETDRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGF 91

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC+R+ GEVMG+YHPHG+++IYDAL R+ QDWSLR  L++GQGNFGS   DP AA RYT
Sbjct: 92  NKCSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYT 151

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+   +  L+ D+ K TVDF PNYDG   EP VL +R+PN+LVNG  GIAVGMAT IP
Sbjct: 152 ECRMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIP 211

Query: 192 THNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV    + V+++PD   D +    M  I+GPDFPTGA+I+GR GI++AY TGRGS
Sbjct: 212 PHNLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIMGRKGIEDAYRTGRGS 271

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306
           I++R V  +E+    R+ +VV+E+PYQVN  ++ +KIAE V++ R+  IAD+RDE S R 
Sbjct: 272 IIMRAVVEVEEIQ-GRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRT 330

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI L+R A A V+LN LY++T LQ+ F  NM+AL    P    +   ++ +V  + 
Sbjct: 331 GQRLVIVLRRDAVAKVVLNNLYKHTQLQTNFGANMLALVDGVPRTLPIDAFIRHWVDHQI 390

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ RRT YLL +A DR H+L GL  A+  LDEV+ +IR SP  E AR  L+        
Sbjct: 391 DVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLI-------- 442

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + E+Q RAILEL+L RL  L R  I +E +++  EI++
Sbjct: 443 ------------------DLLEIDEIQARAILELQLRRLAALERQKIIDEHDAIQREIED 484

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+   R   I+  EL ++ ++    RR+ I     DM  ED I  ED+VVT++  G
Sbjct: 485 YEDILAKPERQRNIVSDELGTIVEKYGDDRRSIIHGFDGDMSMEDLIPEEDVVVTITRGG 544

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y KR  +  YR+Q+RGGKG  G  +R ED V   F  ++H  +LFF++LG VY+ K + L
Sbjct: 545 YAKRTKVDAYRSQKRGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYEL 604

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ++G+ + NI++    E I  ++     E    + Y+V ATK+G V++ +LS++ 
Sbjct: 605 PDASRDSKGQHVANIMAFQPDEHIAQVLALRNYEI---SPYLVLATKNGLVKKTRLSEYD 661

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724
                G IA+ L   DE++     +  +D+LL +K GQ VRF      +R   GR++ GV
Sbjct: 662 SPRTGGLIAVNLRDEDELVGAGLTSSADDLLLVSKKGQSVRFHADDATLRPM-GRSTSGV 720

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G+     D ++SM+++                                           
Sbjct: 721 TGMKFRGEDSLLSMSVIEEG---------------------------------------- 740

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                       +  +  V E G  KR+ +  + +  R+  G+     ++  + G LV  
Sbjct: 741 -----------TDPDVFVVFESGLAKRSQASQWNVKGRAILGVTVAKQTE--KGGDLVGA 787

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V+++D++++V ++G ++R  V+E+R+  R T GV      K++ +V V R
Sbjct: 788 LTVSEDDEVMVVFERGNIVRSRVDEVRLTGRNTAGVWFAKPGKNDAIVGVAR 839



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 102/272 (37%), Gaps = 12/272 (4%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+  LS Y + R GG     V +RDED +    + S+   +L  S  G
Sbjct: 641 PYLVLATKNGLVKKTRLSEYDSPRTGG--LIAVNLRDEDELVGAGLTSSADDLLLVSKKG 698

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +     + + ++    E      +  V    + G 
Sbjct: 699 QSVRFHADDATL-RPMGRSTSGVTGMKFRGEDSLLSMSVIEEGT----DPDVFVVFESGL 753

Query: 657 VRRNKLSDFIQINRS---GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R++ S +    R+     +A + +   +++   T ++++++++  + G  VR  +  +
Sbjct: 754 AKRSQASQWNVKGRAILGVTVAKQTEKGGDLVGALTVSEDDEVMVVFERGNIVRSRVDEV 813

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GRN+ GV      K D ++ +A      A  +E         +       D   + 
Sbjct: 814 R-LTGRNTAGVWFAKPGKNDAIVGVA-RNAEKAVEEEVAEADAEGVSPVDGSPVDDAAVA 871

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             + D+        E  ++       +   +E
Sbjct: 872 GAQADTDTSAPTGTESDRDTADGVPSVDKTTE 903


>gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 858

 Score =  793 bits (2048), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/926 (37%), Positives = 511/926 (55%), Gaps = 102/926 (11%)

Query: 1   MTEHIIS-------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +             +     I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVH
Sbjct: 1   MADEETPKKTFEDAPVDTRHDKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+++ M   G   +K + KC R+ G+VMG++HPHG++++YDAL R+ Q WSLR  L  G
Sbjct: 61  RRVIYAMYDGGYRPDKGFSKCTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS   D  AA RYTE ++   A  ++ D+ +DTV+F+ NYDG  QEP VL +R+PN
Sbjct: 121 QGNFGSPGNDGAAAHRYTETKMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV +G +  + NP+   +     L++ I+GPDFPTGA
Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILG  GI++AY TGRGS+ +R V  +E+    R  +VVTE+PYQVN   +  KIA+LV+
Sbjct: 241 QILGVKGIQDAYRTGRGSVTMRAVVSVEELQ-GRTCLVVTELPYQVNPDNLALKIADLVK 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           + ++  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ  F  NM+A+    
Sbjct: 300 DGKLAGIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGI 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   ++ G + A+   + EV+VRRT++ L KA +RAH+L G   A+  LDEV+ +IR SP
Sbjct: 360 PRTLSIDGFITAWATHQIEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+                            + + E+Q RAIL+++L RL  L
Sbjct: 420 TVEDARTGLIA--------------------------LLEIDEIQARAILDMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDM 527
            R  I +E   + +EI E   I++S  R   I+ +EL  +  +    RRT I+     DM
Sbjct: 454 ERQKIIDENEEIELEIVEFKAIIASEQRQRDIVSEELTELLAKYGDDRRTEIMLGFDGDM 513

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E+MVVTV+  GYVKR     YR+Q RGGKG  G  +R +D V  LF+ +TH 
Sbjct: 514 SMEDLIPEEEMVVTVTRGGYVKRTRSDNYRSQHRGGKGVKGAQLRADDIVDHLFVTTTHH 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++ G VY+ K + L  G   A+G+ + N L+L  GE I  I+   + E+     Y
Sbjct: 574 WLLFFTNTGRVYRAKAYELQEGGRDAKGQHVANFLALQPGEEIAQILDIRDYET---ATY 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V AT +G V++  LS++      G IA+ L   DE++S       +D+LL ++ G  +R
Sbjct: 631 LVLATHNGLVKKTALSEYDTNRSGGIIAVNLREGDELVSAMLVENTDDVLLVSRKGMSIR 690

Query: 708 FPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           F  S   +R   GR++ GV G+S  + D+++S ++V  +                     
Sbjct: 691 FTASDEALRPM-GRSTSGVMGMSFREDDRLLSASVVPDSG-------------------- 729

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                            ++  V+E GF KRTS+  +R+  R G 
Sbjct: 730 ---------------------------------YVFVVTEGGFAKRTSADQYRVQGRGGL 756

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           GI+   +      G L     V D+D++++V   G ++R  V E+    R T GVV    
Sbjct: 757 GIKVAKLD--GARGDLAGALMVGDHDEVLVVLASGKVVRSSVAEVPAKGRDTMGVVFARF 814

Query: 886 AKDERVVSVERIRESEIV-DEAESTE 910
           A +++++++ R  E  +   E E+ +
Sbjct: 815 AAEDKIIAIARNSERNLENKELEAQD 840


>gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A
 gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)]
 gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)]
          Length = 846

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/891 (37%), Positives = 517/891 (58%), Gaps = 89/891 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPH ++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL
Sbjct: 78  QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 258 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 317

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 318 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 377

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KA+  AH++ GL IA  N+D+V+  I+ + + E A+  LM +               
Sbjct: 378 ELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTK--------------- 422

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LS++Q +AIL++RL  L+GL R++++ EL  L   IK+  +IL ++ 
Sbjct: 423 -----------YELSDLQAKAILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKE 471

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           R + II  +L  +  +    RRT+I  G    +++E  I  E +V+T S  GY+KR+P+S
Sbjct: 472 RRIKIISDQLDEIDHKFGDERRTKICYGLNSTIDNEQLIPVETVVITRSSKGYLKRIPIS 531

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y+ Q RGG G  G+   ++D V  L + STH+ +LFF++ G VY+ +  ++P+GS  ++
Sbjct: 532 AYKVQHRGGVGVKGMNTYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISK 591

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G   IN++S+ + E++ +++   +     ++ Y  F+TK G V+R K S+F +I  +GKI
Sbjct: 592 GIPAINLISIEKDEKLMSLLSINDY----DSGYFFFSTKKGLVKRVKASEFSRIQNNGKI 647

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGD 733
           A+KL   D +  V     + +I +    G  VRF    +R   GR + GV G+      D
Sbjct: 648 AIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSM-GRTAQGVIGVKFKNPND 706

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI ++                                                      
Sbjct: 707 EVIGLS-----------------------------------------------------S 713

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             +   +L V EKG GK T   ++R++NR  KG+    V+   + G ++    VN N+++
Sbjct: 714 SHEGSLLLAVCEKGVGKMTDREEYRMTNRGSKGVITIKVTP--KTGNIINTQLVNGNEEL 771

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +++S  G ++RVP+ E+    R T GV + S  + E + SV  I + E  D
Sbjct: 772 LMISSTGKIVRVPLAEVSEQGRNTSGVKLISLNEKETLQSVA-IFDVEQDD 821


>gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485]
 gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485]
          Length = 824

 Score =  793 bits (2047), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/841 (42%), Positives = 513/841 (60%), Gaps = 42/841 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSIT+EM+ +YL+YA++VI+ RA+PD RDGLKPV RRIL+GM  MG   N+ Y K A
Sbjct: 6   VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GK HPHG++A+YDALARMAQ WS+R  LI+GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL ++ KDTVDFR N+DGS++EPVVL A  PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GE+ D    +ID+P+  ++ LMEII GPDFPT  +ILG  GI  AY+TGRG I +R  +H
Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGTEGILAAYSTGRGQITLRAKTH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+       IVVTE+PYQVNKA + E+IAELV++++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILLK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F +NM+AL  +  +P   TL  +L+ ++  R+EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +AR+RAH+L GL IA+ NLD V++ IR S   E+AR  LM               
Sbjct: 366 EFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLM--------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E Q +AILEL+L RL  L R  I  E   +   I E  DIL++
Sbjct: 411 -----------RNFSLTERQAQAILELQLRRLAALERQKIEEEYREVIKLIAELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IK++L  +K++   PRRTRI+     ++ DED I    +++T++  GY+KR  
Sbjct: 460 PRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVRVMITLTDRGYIKRQL 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              YR QRRGG+G  G++ R++D V  L   ++  ++LFF+  G VY+ K   +P  S  
Sbjct: 520 PDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKAHEVPDSSRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N++SL  GE++T+++   E     +  Y+V AT  G ++R +L ++ Q+  +G
Sbjct: 580 AKGLPLVNLVSLEPGEQVTSMLAVREF----DAEYLVMATVRGKIKRTQLREYSQVRSNG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  D +  V       DILLTT  GQ +RF  S +R   GR + GV GI+LA+G
Sbjct: 636 LIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFEQSEVRPM-GRPATGVIGINLAEG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +              +   +A              +      E   ++E    
Sbjct: 695 DRVVSMDLAEEGADLLVVTARGIGKRTALSEYPLKGRATGGVITIKLRNE---TDEVAAA 751

Query: 793 LKLKEQFILT-VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             ++E  +LT ++  G   RTS+ +     R+ +G+   +V+  +     VA   V D D
Sbjct: 752 AVVREHSLLTFITTGGMVMRTSASEISRLGRATQGVTVVNVASGDR----VAALSVEDPD 807

Query: 852 Q 852
           +
Sbjct: 808 E 808



 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 111/319 (34%), Gaps = 55/319 (17%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
             +++   +   ++  T  G ++R     +    R   G   M    +D +  + TC   
Sbjct: 494 VSDEDLIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHLLTCNSL 553

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYD- 749
           +++L  T  G+  +     +   + R + G   V  +SL  G+QV SM  V   DA+Y  
Sbjct: 554 DNLLFFTDRGKVYQIKAHEV-PDSSRTAKGLPLVNLVSLEPGEQVTSMLAVREFDAEYLV 612

Query: 750 --------------------------------------------ERICYMKHMSAQRRLI 765
                                                       E I          R  
Sbjct: 613 MATVRGKIKRTQLREYSQVRSNGLIAIGLEEGDVLGWVRVSHGHEDILLTTARGQTLRFE 672

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ--FILTVSEKGFGKRTSSYDFRISNRS 823
             +   +               +R   + L E+   +L V+ +G GKRT+  ++ +  R+
Sbjct: 673 QSEVRPMGRPATGVIGINLAEGDRVVSMDLAEEGADLLVVTARGIGKRTALSEYPLKGRA 732

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G+    +   NE   + A   V ++  +  ++  G ++R   +EI    RAT+GV + 
Sbjct: 733 TGGVITIKL--RNETDEVAAAAVVREHSLLTFITTGGMVMRTSASEISRLGRATQGVTVV 790

Query: 884 STAKDERVVSVERIRESEI 902
           + A  +RV ++      E 
Sbjct: 791 NVASGDRVAALSVEDPDEN 809



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 71/168 (42%), Gaps = 6/168 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++       D      K +   +  +S   E+    +    +     E   ++L    +
Sbjct: 445 EVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDPRRTRIIPDVTGEVSDEDLIPDVR 504

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++T++++G+ KR     +R   R G+GI+     + + +  L      N  D ++  +D
Sbjct: 505 VMITLTDRGYIKRQLPDAYRTQRRGGRGIKGMLTREQDIVRHL---LTCNSLDNLLFFTD 561

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +G + ++  +E+  +SR  KG   V + S    E+V S+  +RE +  
Sbjct: 562 RGKVYQIKAHEVPDSSRTAKGLPLVNLVSLEPGEQVTSMLAVREFDAE 609


>gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
 gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L]
          Length = 815

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/842 (40%), Positives = 527/842 (62%), Gaps = 33/842 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I  + I++EM+ SY+ Y+++VI+GRA+PD+RDGLKPVHRRIL+ MM+ G+  +K 
Sbjct: 2   DTNNRIIPIEISEEMRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG++++Y A+ +MAQD+S R LL++GQGNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  LL D+ K+TVDF PN+D S +EP+VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEARMSKLALELLRDIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  V  IDN D D+D L++ ++GPDFPT A I+G  GIK AY TGRG + +
Sbjct: 182 PPHNLGEVIDATVHYIDNQDCDVDELLDYVKGPDFPTAATIVGYDGIKQAYKTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QIVVTEIPYQVNKA ++EKIA+LV+EK++  I+DLRDE++R+G R+
Sbjct: 242 RAKAEIEELPKGKQQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR  +A+++LN LY+++ L+  FS+ M+A+    P+   L  +L  ++  +++V+ 
Sbjct: 302 VIELKRDTNANIVLNNLYKHSQLEDTFSIIMLAIVDGTPKILNLKQVLGYYLDHQKDVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L KA  RAH+L GL IA+ N+D V+ IIR S   + A+  L++           
Sbjct: 362 RRTQFELRKAHARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q +AIL++RL RLTGL R+ I  E   L   I+    I
Sbjct: 412 ----------------FALSEIQAQAILDMRLQRLTGLEREKIDKEYKDLMARIEYLESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+   +LLG+IK+E+L++K + + PRRT+I+    + + +D    ED+ +T++HLGY+KR
Sbjct: 456 LADELKLLGVIKEEMLAIKAKHEDPRRTQIIPAEGEFDVKDLFEEEDVAITLTHLGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G + +  R+EDFV +L   +T++++LFF++ G VYK   + +P G 
Sbjct: 516 LPADTYKSQKRGGRGIAALTTREEDFVRELISTTTYSTILFFTNRGRVYKLNAYEVPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESS-WNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ++G A++N+L LN GE++   + F  D  +   + Y++ ATK+G V++ ++S+F  IN
Sbjct: 576 RTSKGTAIVNLLQLNPGEKVARTITFNSDNDTGNESDYLLMATKNGIVKKTQISEFKNIN 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +SG IA+ L   DE++ V       +++L T+    +RF  + +R   GR + GV+GI+L
Sbjct: 636 KSGLIAINLKDGDELIGVNMTDGNQEVVLVTENAMSIRFNEADVRPM-GRTATGVKGITL 694

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +K D+V+SM ++   D             S                    ++     +  
Sbjct: 695 SKDDRVVSMNLIGEGDNLLVVSQNGFGKRSDVEEYRPQI--RGGKGIKTYNITSKTGKIV 752

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L  ++  ++ ++  G   R    +  I  R   G++     +      +V++  +  
Sbjct: 753 GSSLVNEDDEMMMINSNGVLIRIRVNEISIFGRITSGVKLMRTDE---EVEVVSIAKIKA 809

Query: 850 ND 851
            D
Sbjct: 810 ED 811


>gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
 gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235]
          Length = 820

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/891 (38%), Positives = 510/891 (57%), Gaps = 91/891 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +    + I+S SITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RRIL+ M++ G+  N
Sbjct: 2   ENISNERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAMLREGLLHN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + KCA + GEV+  YHPHG++++YD L RMAQ W +R  LI+ QGNFGSVDGD PAA 
Sbjct: 62  RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVDGDSPAAY 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  LL ++ +DTVDF  NY  S  EP VL A  PN+L+NG  GIAVGMAT
Sbjct: 122 RYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++DG  A IDNP+I +  L E+I+GPDFPTG  I+GR GI     TGRG +
Sbjct: 182 NIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRIIGRKGIDEYMNTGRGIV 241

Query: 249 VIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
            +RG    E   G  RE+I+++ IPY VN+A ++ KIAELV  K +  I+DLRDESD   
Sbjct: 242 RMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDLRDESDE-N 300

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKRG   +VI+++LY+ T+L++ F VNM+AL+  +P++  +  ++  ++  R E
Sbjct: 301 TRIVIELKRGEFPEVIISKLYKKTALEASFGVNMLALDNKRPKQMNMKEMINCYIDHRRE 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RRT + L KA DRAH+L G  IA+ NLD+ ++IIR S N + A+  L ++       
Sbjct: 361 VIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQEK------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AIL+LRL +LTG+ R  I  E   L   I+E 
Sbjct: 414 -------------------YPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEEL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL +  +LL IIK+EL  +K++  +PR+  IV    D+   D   +E   +T+SH G+
Sbjct: 455 RSILENEYKLLSIIKEELSELKEKYTSPRKCEIVPYEGDISKADMTPKEGCFITISHKGF 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV  S +R Q+RGGKG  G    ++DFV  +F  +TH +++FF + G VY EKV+ LP
Sbjct: 515 IKRVSDSEFRTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELP 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS  ++G+++ N+L L + E+I  ++   E      +  +V  TKHG V++  L+ +  
Sbjct: 575 EGSRTSKGRSINNVLQLQKEEQIAAMICVKE---ITEDFNLVMCTKHGTVKKTNLAAYKN 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             + G I + +D  D +++V+   +++++++ T LG+ +RF  S +R   GR + GVRG+
Sbjct: 632 FRKGGIIGINIDEGDSLITVKLTNRDSELVIVTHLGKSIRFHESDLRE-QGRATRGVRGV 690

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L++ D   +M +V +  A                                         
Sbjct: 691 KLSEKDYAQAMEVVDNESA----------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L     G GKRT+  +F +  R G G+ A           +     V
Sbjct: 710 ------------LLICGINGQGKRTTFDEFPLQKRGGSGVIAAKT------AGVAGALAV 751

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++D+I++++  G  +R  V +I +  R TKGV   +  K + ++ + RI 
Sbjct: 752 RESDEIMMLTKNGQAVRTSVKDINLIGRITKGVRCINLNKGDVLLGIARIV 802


>gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 790

 Score =  792 bits (2046), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/821 (42%), Positives = 507/821 (61%), Gaps = 33/821 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE    +  V I  EM+NS++ YA+++I+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 3   EESRSQVKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG+AA+Y+ + RMAQD+SLR +L++G GNFGS+DGD  AA R
Sbjct: 63  PHKKSARIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+ K+T+D+ PNYDG  QEPVVL AR+PN++VNG  GIAVGMATN
Sbjct: 123 YTEARLSKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG + +I+NPD+    LM  I+GPDFPTGA ILGR GI+ AY+TGRGS+ 
Sbjct: 183 IPPHNLGEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYILGREGIRQAYSTGRGSVT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+   ++ +I+V E+PYQVNKA ++EKIAELVREK+I  I DLRDESDR G R
Sbjct: 243 MRAKTTIEEV-NNKARIIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIEL+R  + +V+LN L+++T+LQS F +  +AL   +P+   L  +L  ++  +  V+
Sbjct: 302 IVIELRRDVNPNVVLNNLFKHTALQSNFGIINIALVNGEPKVLNLKEMLYYYLEHQRVVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + AR  LM++         
Sbjct: 362 RRRTEYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQ--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q +AIL++RL RLTGL R+ I NE   L  +I E   
Sbjct: 413 -----------------FELSHDQAQAILDMRLQRLTGLEREKIENEYKELMAKIAELKA 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    +L II +EL  ++      RRT I  G   +EDED I RE++V+T++H GYVK
Sbjct: 456 ILADEQLILKIISEELQQIRASYGDERRTEITIGEDAIEDEDLIPREEVVITITHSGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+P+S YR+QRRGG+G  G+  ++ DFV  LF+ ++H  ++FF+  G VY+ K + +P  
Sbjct: 516 RLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKAYEIPEL 575

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              ARG  +IN++ + QGE +  ++P    E   +  ++ FAT+ G V++  L D+  I 
Sbjct: 576 GRTARGTPIINLIQIEQGETVNAVIPIESFE---SGHFLFFATQQGIVKKTPLKDYNNIR 632

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + G IA+ L   D ++ V+      +I++ T+ G  + FP   +R   GR + GV+GI +
Sbjct: 633 KGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRSM-GRAATGVKGIHI 691

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ D VI M IV   +             +                  + + +       
Sbjct: 692 SEDDAVIDMDIVDENNTVLIVTSKGFGKRTPMSEYRIQTRGGKGIKTLNVTSKN--GPVV 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
             ++  +++ ++ ++  G   RTS     I  R+ +G+R  
Sbjct: 750 GLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLI 790



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 74/208 (35%), Gaps = 9/208 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERI 752
           ++  T  G   R P+S  R    R   GV G+     D V  + +           D+  
Sbjct: 505 VITITHSGYVKRLPVSTYRS-QRRGGRGVVGMDTKNNDFVEHLFVTNSHHYLMFFTDKGK 563

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
            Y         L                    ++     E      F+   +++G  K+T
Sbjct: 564 VYRLKAYEIPELGRTARGTPIINLIQIEQGETVNAVIPIESFESGHFLFFATQQGIVKKT 623

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              D+    +   G+ A ++ +      L+ V   + N  II+ + +G  I  P  ++R 
Sbjct: 624 PLKDYNNIRKG--GLIAINLRE---DDRLIGVKLTDGNCNIIMGTRQGMSIHFPERDVRS 678

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRES 900
             RA  GV     ++D+ V+ ++ + E+
Sbjct: 679 MGRAATGVKGIHISEDDAVIDMDIVDEN 706



 Score = 97.2 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 108/274 (39%), Gaps = 12/274 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
              +++       V+  T  G V+R  +S +    R   G + M   + D +  +     
Sbjct: 492 AIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDTKNNDFVEHLFVTNS 551

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYD 749
            + ++  T  G+  R     I    GR + G   I+L    +G+ V +  ++     +  
Sbjct: 552 HHYLMFFTDKGKVYRLKAYEIPEL-GRTARGTPIINLIQIEQGETVNA--VIPIESFESG 608

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
             + +       ++    D   I      +            +L      I+  + +G  
Sbjct: 609 HFLFFATQQGIVKKTPLKDYNNIRKGGLIAINLREDDRLIGVKLTDGNCNIIMGTRQGMS 668

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
                 D R   R+  G++   +S+     A++ +  V++N+ +++V+ KG   R P++E
Sbjct: 669 IHFPERDVRSMGRAATGVKGIHISE---DDAVIDMDIVDENNTVLIVTSKGFGKRTPMSE 725

Query: 870 IRIASRATKGVVIFS-TAKDERVVSVERIRESEI 902
            RI +R  KG+   + T+K+  VV ++ + E E 
Sbjct: 726 YRIQTRGGKGIKTLNVTSKNGPVVGLKVVEEDED 759


>gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402]
          Length = 815

 Score =  792 bits (2045), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/896 (37%), Positives = 519/896 (57%), Gaps = 87/896 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
             +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +
Sbjct: 5   QTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSS 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
               KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA 
Sbjct: 65  GPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAY 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMAT
Sbjct: 125 RYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I
Sbjct: 185 NMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKI 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
           ++RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G
Sbjct: 245 LVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +
Sbjct: 305 LRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVD 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S + +TA+  LM+R       
Sbjct: 365 VVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                  +VQ +AI++++L RLT L  +D+R EL  L + I   
Sbjct: 418 -------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
            D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLG
Sbjct: 459 KDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +
Sbjct: 519 YIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEI 578

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S  +RG  + ++LS++  E IT ++   E +   +  Y++ AT  G V++    +F 
Sbjct: 579 QEASRTSRGSHIKSLLSVSSDEEITAVVSLKEFD---DKTYLLMATAGGVVKKVTTDNFA 635

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                G IA+KLD  D+++S      +++I+L T+ GQ +R     IR   GR+S GV G
Sbjct: 636 NAKTRGIIAIKLDEGDKLVSAILTGGKDEIMLITRRGQALRTSEEDIRS-QGRSSRGVTG 694

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L+  D++     V                                             
Sbjct: 695 IKLSSEDELTGALRVTE------------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +L ++E G+GKR    +F    R   G R   +S+  + G +V +  
Sbjct: 712 ----------NQKMLVMTENGYGKRVEFSEFSAHGRGTGGQRIYTLSE--KTGEVVGLLT 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           V D+D+++ ++ +G  IR+ V+ +    R+ +GV I      + ++ ++ +   E 
Sbjct: 760 VFDDDEVVCITGQGKTIRISVDSVGTMGRSAQGVRILDIESPDMLIGLDVVARDEE 815


>gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon]
          Length = 843

 Score =  792 bits (2044), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/920 (37%), Positives = 541/920 (58%), Gaps = 100/920 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E     + E  + +  VS+ DEM +SY+ YA++VI+GRA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MSED--QREAEVRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  N+ + K ARI G+V+GKYHPHG+ A+YD + RMAQD+S R  L++GQGNFGSV
Sbjct: 59  HELGVTHNRPHKKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  LL DL KDTV++ PN+D S +EP +L A+ PN+L+NG  
Sbjct: 119 DGDAAAAMRYTEARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVVDG + VI+ P++ ++ LM+II+ PDFPTG +I+G  GIK A
Sbjct: 179 GIAVGMATNMPPHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTGGIIIGYEGIKRA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI IR  + IE   G +E+IV+ EIPYQVNK+ ++E+IAE  ++ ++  I+ LR
Sbjct: 239 YETGRGSIRIRAKAEIE-VKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G R+VIELK GA++ +ILN+LY++T L++ F V  +AL   +P   TL  +++ 
Sbjct: 298 DESDRKGMRIVIELKAGANSAIILNRLYKHTQLENTFGVINLALIDGEPRVLTLKELIEC 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R+EV +RR +Y L +A  R H+L GL IA++N+DEV+R+I+ + + +TA+  L+ R
Sbjct: 358 YIKHRKEVTIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIAR 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q + IL++RL+RL+ L RD I  E   L
Sbjct: 418 --------------------------FELSEEQAKEILDMRLSRLSALERDKIETERAEL 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I    ++L S +R+  ++K++L+  KD+    RRT I E +    + D +  +++++
Sbjct: 452 ETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNIEEMVTL-SERDFVEEKEVIL 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++   YVKR+P  +++ Q RGGKG + +  +++D + +    ST   ++FF+  G  Y+
Sbjct: 511 YLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQ 570

Query: 601 EKVWRLPIGSPQARGKALIN----ILSLNQGERITTIMPFPED-----ESSWNNLYVVFA 651
            K + +P  S  ++GK L+N     +S  + E+  T +  PE+     E++    Y+VFA
Sbjct: 571 VKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFA 630

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----------QENDILLTTK 701
           TK G V+R+ L+    I  +G +A++    D +  V               +N I+L++K
Sbjct: 631 TKRGVVKRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSK 690

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ + F    +R   GR + GVRG+ L K D++ S+  +    +    R          
Sbjct: 691 NGKAIFFHEEELREM-GRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAV-------- 741

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                   T++EKG+GKRT    +R ++
Sbjct: 742 ----------------------------------------TITEKGYGKRTKLDAYRETH 761

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R GKG+ +    + N  G +V +  V + D++++ +  G + ++ V  I +  R T+GV 
Sbjct: 762 RGGKGVISIKTGERN--GKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVR 819

Query: 882 IFSTAKDERVVSVERIRESE 901
           I +  K ERVV+V+ +  +E
Sbjct: 820 IMNVKKGERVVAVDILSATE 839



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 95/249 (38%), Gaps = 24/249 (9%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA--- 730
           + + + + DE++ +     +     T K     RF +S  +      +  +  + L+   
Sbjct: 387 LIIAISNIDEVIRLIKAASD---TKTAKSALIARFELSEEQ------AKEILDMRLSRLS 437

Query: 731 --KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             + D++ +    L    ++ + +   +    +        ++        +    +   
Sbjct: 438 ALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNIEEMVTL 497

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++   +++ IL ++++ + KR  +  F+   R GKGI      +  E   +V     +
Sbjct: 498 SERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVI---EKKEDDKIVNFIRAS 554

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-------TAKDERVVSVERIRESE 901
             +++I  ++ G   +V   EI  +SR +KG  + +       T + E+ V+   I E  
Sbjct: 555 TRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIPEEV 614

Query: 902 IVDEAESTE 910
                 +TE
Sbjct: 615 DKGIETNTE 623



 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 63/188 (33%), Gaps = 17/188 (9%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           +++++++     +          +    +        +           +    +     
Sbjct: 492 EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKEDDKIVNFI 551

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI-------RATDVSKINEIGALVAV- 844
                + ++  +E G   +  +Y+   S+R  KG         +    +  +    VA+ 
Sbjct: 552 RASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREKFVTAVAIP 611

Query: 845 FPVNDNDQ-------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             V+   +       ++  + +G + R  + +++   R+T GVV   T K + +  V  I
Sbjct: 612 EEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAI-RST-GVVAVRTTKGDSLADVVLI 669

Query: 898 RESEIVDE 905
           + S    +
Sbjct: 670 KPSLDSQD 677


>gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1]
 gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1]
          Length = 811

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/898 (37%), Positives = 496/898 (55%), Gaps = 89/898 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E +G+  ++I +EM++ Y+ YA++VI+GRAIPD RDGLKPVHRR L+ M +MG   +K
Sbjct: 2   TSEGEGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG++AIYD L +MAQ +S R +L++GQGNFGS+DGD  AA R
Sbjct: 62  PYKKSARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL D+ K TVDF PN+D S QEP VL AR PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EV +    VID+     + LM+++ GPDFPTG +++G  GI++AY TGRG  V
Sbjct: 182 MPPHNLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGTAGIRDAYLTGRGKCV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RGV+ IE+      QI++TEIP+QVNKA ++E IA LVR+KRI  I D+RDESDR G R
Sbjct: 242 VRGVAEIEEEGR-TPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELKRGA+  VILN LY++T+L+S F +  +A+   +P    L  I+  F+  R +VV
Sbjct: 301 IVVELKRGAAPQVILNFLYKHTALESSFGIINLAIVDRQPRTLNLKEIIHEFLKHRVDVV 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L K  +R H+L GL +A+ N+D V+  IR S   + A++ L+ +         
Sbjct: 361 RRRTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L EVQ  AIL+++L RL  L    I +E +++  EI+    
Sbjct: 412 -----------------FALDEVQADAILKMQLRRLAALEHQKILDERDAIAAEIERLSA 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S + +L  IK+EL+ +       RRTRI +     + ED I  + ++V+++   YVK
Sbjct: 455 ILASEASILAEIKKELVDIGARFGDERRTRIAQAAEAFDREDLIEDKPVLVSLTSSNYVK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR QRRGG G  G+  +D D V  +F+ + H ++L F+  G +Y  K++ LP G
Sbjct: 515 RIDLDTYRNQRRGGHGVIGMATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEG 574

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
               +GKAL+N+L+L+  ER+TT                                     
Sbjct: 575 QRTGKGKALVNLLNLDGEERVTT------------------------------------- 597

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGIS 728
                         ++ V     ++ +   T+ G   +  +    R        G+  I+
Sbjct: 598 --------------VIPVREYRPDHHLFFATRNGTVAKMALDEFSRPRQ----TGINAIN 639

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD ++ +           E I   K   + R           +      ++    + 
Sbjct: 640 LRDGDALVDVKATD----GNQELILTTKFGQSLRFHEEAVRPVHRNAMGVRGIKLRHGDA 695

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                 +++  +LT++E+G+GKRT   ++R   R   G+R   V      G +V    V+
Sbjct: 696 LQAIAIVEDDHLLTITEQGYGKRTEFDEYRGHGRGTLGVRNIVVDAR--AGNVVGSMAVS 753

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D+D+II++S  G +IR  V+EI I  R T+GV +      +RV+    +   E  +EA
Sbjct: 754 DDDEIIVMSASGIVIRTKVSEISIQKRGTRGVRVMKLDDGDRVIGFTILDSEEPEEEA 811


>gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
 gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100]
          Length = 858

 Score =  791 bits (2043), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/909 (39%), Positives = 542/909 (59%), Gaps = 118/909 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I ++ I   +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MENIFTKDSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   ++GQGNFGS+DGD  
Sbjct: 61  GSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR
Sbjct: 241 GRVKVRAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +LK F+  R
Sbjct: 300 EGIRVVIELKRDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLKLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+
Sbjct: 415 ---------------------FGLSELQSNAILDMKLGRLTGLEREKIDNELKELLAEIE 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +IK EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDEILKSEALLENLIKDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+ + F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQADEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ +                              
Sbjct: 631 QNIRSVGVKAINLDENDELVTAIIVARDENEMSNQALEDEENLENEVLENNEELENVAVG 690

Query: 696 --ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERI 752
             +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ +         
Sbjct: 691 KMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDA------- 742

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                        Q IL+VS KG GKRT
Sbjct: 743 ---------------------------------------------QEILSVSAKGIGKRT 757

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
            + ++R+ +R GKG+    ++   +   L++V  V+++  ++ ++  G +IRV +  IR 
Sbjct: 758 DAGEYRLQSRGGKGVICMKLNAKTK--DLISVVIVDESMDLMALTTSGKMIRVDMQSIRK 815

Query: 873 ASRATKGVV 881
           A R T GV+
Sbjct: 816 AGRNTSGVI 824


>gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis]
          Length = 887

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/902 (38%), Positives = 534/902 (59%), Gaps = 87/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE   G+  V+++ EMQNS+L YA++VI+ RAIPD RDGLKPVHRRIL+GM  +G+  + 
Sbjct: 58  EEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHHSS 117

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG+A++Y+A+ RMAQ++S+R  L++G GNFGS+DGDP AA R
Sbjct: 118 AFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAAMR 177

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  +L+ + K+TV+F PNYD S  EP VL +R+PN+LV GG GIAVGMAT 
Sbjct: 178 YTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMATT 237

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HNL E +   +A   NP I L  LME I+GPDFPTG +ILG  GI +A+ TG+GSI 
Sbjct: 238 IAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTKGIIDAFETGKGSIS 297

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  S  + +I+V+EIPY V K  ++EKIA LV+EK I  I+DLRDE++R+G R
Sbjct: 298 IRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRKGIR 357

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+    +V+LN+L++ T+LQ  F+VNMVAL   +P+  +L   L+ ++  ++E+V
Sbjct: 358 IVIEVKKNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGEPKLLSLKDALRVYLDHQKEIV 417

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR K+ L K+  R H+L GL IAV+N+DEV+RIIR S     A+ +L Q+         
Sbjct: 418 IRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQK--------- 468

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+QT+AI+E+RL RLTGL  + +  E+  L I I    +
Sbjct: 469 -----------------FSLSEIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKE 511

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+S  +L+ +I +EL  +K++    R T+I    + ++ DED I   ++ +  S  GYV
Sbjct: 512 ILNSEQKLIDLIVEELEEIKEKYGDKRLTQIDSYAIANISDEDLIPERNIAIIQSVKGYV 571

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ LS Y+ Q RGG G S     ++D +  +   +THT +L F+S   VY+ +  ++P 
Sbjct: 572 KRINLSEYKVQNRGGVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPE 631

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G   IN++ + + E + +I+P    +   +  ++V  T++G +++ K+  F +I
Sbjct: 632 SSKQSKGIPFINLIQIEKDEEVVSILPAQNYD---DGKFLVTLTQNGLIKKTKIEHFQRI 688

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GKIAM +   D+++       + +I++ +  G+ VRF +S +R   GR S GVR I 
Sbjct: 689 NTNGKIAMVILENDKLVRAMILNNDEEIIVGSSEGKIVRFDLSEVRD-TGRKSAGVRAIK 747

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA   + IS++                                                 
Sbjct: 748 LAPKHKAISLSA------------------------------------------------ 759

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + +++ ++   GFGK+T   D+R + R+ KG+    V   ++ G LV    V 
Sbjct: 760 -----SSEGKYVFSLGSLGFGKKTPIEDYRKTKRAAKGVITIKV---DKAGKLVHSGFVE 811

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            ++ II+++ KG  IR  + ++   SR+TKGV I    KDE++ S+  I  ++I +E   
Sbjct: 812 GSEDIIILNSKGIAIRTSLEQVSDTSRSTKGVKIIQLKKDEKIKSLTLINVNKIDEEISK 871

Query: 909 TE 910
           T+
Sbjct: 872 TQ 873


>gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 898

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/904 (35%), Positives = 517/904 (57%), Gaps = 89/904 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ G+    +   M++S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+    
Sbjct: 65  ETEQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTA 124

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGS+DGD  AA R
Sbjct: 125 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMR 184

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++D + K+TVDF  NYDG+ +EP VL +R+PN+LV+G  GIAVGMATN
Sbjct: 185 YTEARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATN 244

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++D   A+  NP+I +D LME +  PDFPTGA I  + G+  AY TGRGSI 
Sbjct: 245 IPPHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIFNKAGLIEAYKTGRGSIT 304

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  ++I++ +  + +I++TEIPY+V K  ++EKIA+ ++ KRI  I+D RDES+R G R
Sbjct: 305 MRAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIR 364

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI++K+ A  +VILN LY+ T LQ+ FS NM+AL   +P+   L   L+ ++  + +V 
Sbjct: 365 VVIDVKKNAVPEVILNTLYKLTRLQTNFSFNMIALVNGEPKLLNLKECLQVYLDHQIDVT 424

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L K   RAH+L GL I V N+D V+ II+ S     A+ +L Q          
Sbjct: 425 RRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQ---------- 474

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  LSE+Q +AI+++RL RLTGL  + + +EL+ +   I E   
Sbjct: 475 ----------------TFSLSEIQAKAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRA 518

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYV 548
           ILSS  +L+ +I +EL  VK+     RR+ I    +  + +ED I ++++V+T+S   Y+
Sbjct: 519 ILSSHEKLIELIIKELQEVKEAYGDKRRSEIRWDVMSSINNEDLIPQKEIVITLSSNNYI 578

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR QRRGG G S V    +D + D+ + +TH  +L F+    +Y+ +   +P 
Sbjct: 579 KRIDLEEYREQRRGGVGVSTVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPS 638

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+ Q++G  ++NI+  + + E++  I+   + E    +  ++  T+ G +++  L ++  
Sbjct: 639 GTKQSKGTPIVNIVPTIQKNEKVVKIICVTDYE---ESQSLITVTERGVIKKTNLKEYEL 695

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I ++GK A+ L   D ++ V    Q+ +I +     +  RF ++ +R   GR + GV GI
Sbjct: 696 IRKNGKYALSLLEDDHLIDVRVVDQDEEIFIAASNSRINRFNVADVREM-GRVARGVGGI 754

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+  D+V+S++                                                
Sbjct: 755 RLSDDDKVVSVSSSKDG------------------------------------------- 771

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      +I ++  KG+GK +    +R + R+ KG+   +    ++ G LV    V
Sbjct: 772 ----------AYIFSLGAKGYGKLSLVESYRKTKRNAKGVITLN---EDKAGKLVYAAAV 818

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEA 906
           +  + +I+++  G  IR+ + +I +  R  KGV I +     +++V V +I + +  D  
Sbjct: 819 HGVEDLIIMTQSGIAIRISLRDINVIGRNAKGVKIINLKGRSDQIVGVAKIYDEDATDRE 878

Query: 907 ESTE 910
            + E
Sbjct: 879 LTKE 882


>gi|313238121|emb|CBY13219.1| unnamed protein product [Oikopleura dioica]
          Length = 855

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/914 (38%), Positives = 521/914 (57%), Gaps = 99/914 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               I  +++ +E+  S+L Y+++VI+ RA+PD+RDGLKP  RR+L+ M Q+GV   K +
Sbjct: 2   SNDSIKPINVAEELSQSFLEYSMSVIISRALPDVRDGLKPSQRRVLYAMRQLGVTPGKAH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VKCA+I GE MG +HPHG+ +IY  L  M Q WS+R +L++GQGNFGSV+GD  A+ RYT
Sbjct: 62  VKCAKIVGETMGNFHPHGDQSIYSTLVNMGQPWSMREMLVDGQGNFGSVEGDAAASMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL      +++DL K TVDF+PNYDGS +EP VL + +PN LVNGG GIAVGMATN+ 
Sbjct: 122 EARLHPLGMAMMEDLEKATVDFQPNYDGSQEEPTVLPSAFPNFLVNGGTGIAVGMATNLA 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG  A ID PDI L  LM+ I+GPDFP    I G  GI+  + TGRGS+ +R
Sbjct: 182 PHNLGEVIDGICAQIDKPDITLPELMQYIKGPDFPVSCEIRGIRGIEEYFRTGRGSMRLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   IE+    +  IV+ E+PY VN+A + E+IAELV EK +  I+ +RD SD +  R+ 
Sbjct: 242 GKVEIEENENGKSFIVIREVPYGVNRAVLQERIAELVNEKTLTGISGMRDLSDEE-TRIE 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A   V++ QL++ T+L++ FSVNM+A++  +P++ +L   + A++  R +V++R
Sbjct: 301 IELKRDARPQVVVAQLFKLTALETSFSVNMLAIHQNRPKQLSLKEAIDAYIEHRRDVIIR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++LL KA +RA +L    +A+ +LD+ +RIIR S N + AR     R           
Sbjct: 361 RTRFLLGKAEERAELLEAFLLALGHLDDFIRIIRDSKNRDEARELQGDR----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AILELRL +LTG+ +D ++ E + + IEIK+ LDIL
Sbjct: 410 ---------------YVFSERQVNAILELRLYQLTGMEQDKVKGEYDGILIEIKDLLDIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   R+L IIK EL  ++D+  TPR+  I+    ++  ED I  + M+VT+SH GYVKR 
Sbjct: 455 AREVRVLTIIKDELRVIRDKYATPRKCPILAEAGEVAMEDLIANDAMIVTLSHRGYVKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           P + YR Q RGGKG  G+  +       +DFV  LF V  H  +LFF++ G VY E+V+ 
Sbjct: 515 PATEYRLQGRGGKGLKGMETKATGKDEPDDFVEHLFSVQAHDYLLFFTNTGRVYVERVFE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPF--------PEDESSWNNLYVVFATKHGNV 657
           LP GS  + G+++ N+L+L   E+I  ++           +     +  +V FAT++G V
Sbjct: 575 LPEGSRTSTGRSIKNVLNLKPDEKIAALLRLERTTDDNGNDITFREDAGFVFFATRNGKV 634

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRV 715
           ++  L+DF    + G IA+ LD  ++++ V   + E++I+L T+ G  ++F      IR 
Sbjct: 635 KKTALNDFRNYRKDGIIAINLDEGNDLIGVSLTSGEDEIVLVTRDGMSIKFTEGRPQIRP 694

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV GI L K D V+ MAIV                                  
Sbjct: 695 -QGRATAGVTGIRLRKDDYVVGMAIVSE-------------------------------- 721

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                E  +L  SE G GKRT+   +R   R G G++  +V+  
Sbjct: 722 ---------------------ETMLLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVT-- 758

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++ G +V    V + D+++L++  G  IR+ VNEIR   R  +GV + +  + E++  + 
Sbjct: 759 DKTGKVVNAVSVTEQDELMLMTSTGQSIRIRVNEIRETGRVAQGVKLLTLKEGEKLQDIS 818

Query: 896 RIRESEIVDEAEST 909
            +      D   S 
Sbjct: 819 LVIPDGEDDAGSSD 832



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 106/263 (40%), Gaps = 19/263 (7%)

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT    G      ED       V   +  G VK+  L+ +R  R+ G     +   ++  
Sbjct: 607 RTTDDNGNDITFREDAG----FVFFATRNGKVKKTALNDFRNYRKDGIIAINLDEGNDLI 662

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
              L   S    ++  +  G   K    R P   PQ R  A +  + L + + +  +   
Sbjct: 663 GVSL--TSGEDEIVLVTRDGMSIKFTEGR-PQIRPQGRATAGVTGIRLRKDDYVVGMAIV 719

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQE 693
            E+        ++ A+++G  +R   S +  + R G     L+  D+    ++  + T++
Sbjct: 720 SEETM------LLVASENGLGKRTAFSSYRPLRRGGLGVKTLNVTDKTGKVVNAVSVTEQ 773

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--ISMAIVLHADADYDER 751
           ++++L T  GQ +R  ++ IR   GR + GV+ ++L +G+++  IS+ I    D      
Sbjct: 774 DELMLMTSTGQSIRIRVNEIRE-TGRVAQGVKLLTLKEGEKLQDISLVIPDGEDDAGSSD 832

Query: 752 ICYMKHMSAQRRLISGDTEEITS 774
               +         +  +E+  +
Sbjct: 833 ATTAEDAGPPSGDDTQASEDAAN 855


>gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 919

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/882 (40%), Positives = 513/882 (58%), Gaps = 40/882 (4%)

Query: 1   MTEHIISSDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M +                    +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPV
Sbjct: 1   MADDTTDKPATPPASPPPSGAGELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M  +G   N+ Y K AR+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++
Sbjct: 61  HRRVLYAMHDLGNTHNRAYKKSARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD PAA RYTE R+ + A  LL D+ K+TVDF PNYD S  EP+V+  ++P
Sbjct: 121 GQGNFGSVDGDSPAAMRYTEVRMDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG  GIAVGM TNIP HN+GEV+DG + +ID+P   +  LM+ I GPDFPT A I 
Sbjct: 181 NLLVNGSTGIAVGMTTNIPPHNMGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GR GI  AY TGRG I IR  + IE +    RE I++TEIPYQVNKA ++EKIA+LVREK
Sbjct: 241 GREGIARAYETGRGQITIRARTEIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREK 300

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDRQG R+ IELKR A + V+LN L+  T L++ F   M+A++G +P  
Sbjct: 301 KLEGISDIRDESDRQGMRIFIELKRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRT 360

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L  F++ R +V+ RRT+Y L KA  R H++ GL +A   +D VV +IR S +P+
Sbjct: 361 LNLKELLDRFISHRRDVITRRTRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPD 420

Query: 412 TARRELM-----------------------QRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
            AR  LM                        ++     +        D            
Sbjct: 421 EARWGLMHILSSELYEHERFGNLPRIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQG 480

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            SE+Q + ILE+RL RLTGL R+++  EL +L  +I    DIL+  S LL +IK EL  +
Sbjct: 481 FSEIQAQNILEMRLQRLTGLQREELFKELLALVRDIARLRDILAHESSLLNVIKTELQDI 540

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           +      RRT I   + ++  ED I  EDMVVT+SH GYVKR PL+ YRAQ+RGG+G++G
Sbjct: 541 RARYGDKRRTEITGEVSEITSEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTG 600

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
              +++DFVTDLF+ STH  ++  ++ G +Y  KV ++P  S  +RGKA+IN++   + E
Sbjct: 601 ATTKEDDFVTDLFVASTHAFLMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDE 660

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           ++  ++   +      N +V F TK G V+R  LS F  +  SG IA+ ++  DE+++V+
Sbjct: 661 KLAQVLVTRDFP---ENRFVFFVTKKGVVKRTDLSAFANVRVSGIIALGIEEGDELVAVK 717

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
                 D+LL+T  G  +RFP   +R   GR + GV+GI+L  GD+V+   +V       
Sbjct: 718 ITDGSKDVLLSTAQGMSIRFPEEEVRSM-GRQAYGVKGITLVDGDEVVGADVVEKDATIL 776

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                     + +             +   ++          Q     E  +L V+  G 
Sbjct: 777 TVTENGYGKRTQEAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADE--VLLVTNGGM 834

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             R  + +  +  R+ +G+R   +   N    +  +  + ++
Sbjct: 835 LIRMKAREISVIGRNTQGVRLIAL--ENGTEKVTGISKLPES 874



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/260 (18%), Positives = 99/260 (38%), Gaps = 16/260 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V  V+  G VKR  LS +   R  G     + + + D +  + I      VL  
Sbjct: 671 FPENRFVFFVTKKGVVKRTDLSAFANVRVSG--IIALGIEEGDELVAVKITDGSKDVLLS 728

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G   +     +     QA G   I ++  ++             +    +  ++  T
Sbjct: 729 TAQGMSIRFPEEEVRSMGRQAYGVKGITLVDGDE---------VVGADVVEKDATILTVT 779

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFP 709
           ++G  +R + +++    R GK  + +       +++ +      +++LL T  G  +R  
Sbjct: 780 ENGYGKRTQEAEYRVQGRGGKGIIDIKTTERNGKVVGLVQVKDADEVLLVTNGGMLIRMK 839

Query: 710 ISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              I    GRN+ GVR I+L  G ++V  ++ +  +  + ++ +         + L    
Sbjct: 840 AREI-SVIGRNTQGVRLIALENGTEKVTGISKLPESSNESEDTLEGEAAGGEPQALAESS 898

Query: 769 TEEITSLKNDSSVEGNISEE 788
            E       ++   G+ SEE
Sbjct: 899 EEPPAEPSGEAESGGDPSEE 918


>gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
 gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2]
          Length = 804

 Score =  791 bits (2042), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/887 (39%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           +  S +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673
           G+ +   L+L   E+I  +     D +      +V  TK G ++R  L +F       G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGND-----LVIVTKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E + +++ TK+G  VRFP+S +R   GRN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   D                                               
Sbjct: 692 DEVVSVDVIPPGD----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R    S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    R+      +   +E L V    +E+ ++  +  G     P+++ R    R   
Sbjct: 473 QQYGDPRRTEITDQSIQYNEEELIV----EEDVVITLSHNGYLKSTPLNSYRSQK-RGGK 527

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781
           G+    L + D+V  + +  +  +          ++    +L + G       +    ++
Sbjct: 528 GITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839
           E          L      ++ V++ G  KRT+  +F    SNR   G+RA  +       
Sbjct: 588 EDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641

Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V+   VN   + ++V +  G  +R PV+++R   R   GV        + VVSV+ I 
Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701

Query: 899 ESEIVDEAESTE 910
             +  +    TE
Sbjct: 702 PGDEGEILTVTE 713


>gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
 gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10]
          Length = 804

 Score =  790 bits (2041), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/887 (39%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           +  S +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673
           G+ +   L+L   E+I  +     D +      +V  TK G ++R  L +F       G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGND-----LVIVTKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E + +++ TK+G  VRFP+S +R   GRN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRM-GRNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   D                                               
Sbjct: 692 DEVVSVDVIPPGD----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R    S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    R+      +   +E L V    +E+ ++  +  G     P+++ R    R   
Sbjct: 473 QQYGDPRRTEITDQSIQYNEEELIV----EEDVVITLSHNGYLKSTPLNSYRSQK-RGGK 527

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781
           G+    L + D+V  + +  +  +          ++    +L + G       +    ++
Sbjct: 528 GITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839
           E          L      ++ V++ G  KRT+  +F    SNR   G+RA  +       
Sbjct: 588 EDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641

Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V+   VN   + ++V +  G  +R PV+++R   R   GV        + VVSV+ I 
Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAVRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701

Query: 899 ESEIVDEAESTE 910
             +  +    TE
Sbjct: 702 PGDEGEILTVTE 713


>gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826]
 gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826]
          Length = 873

 Score =  790 bits (2040), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/954 (39%), Positives = 556/954 (58%), Gaps = 135/954 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++    E  + I SV I D ++NSYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MKDNLL----ELTQDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y+K ARI GEV+GKYHPHG+ A+YDAL RMAQ +S+R  +++GQGNFGS+
Sbjct: 57  DNLGVGSRSAYMKSARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+      LL D+ KDTVDF PNYD    EP VL +R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEARMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E++DG + +++N +  L+ +ME I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV++K+I  I+++R
Sbjct: 237 YRTGRGRVKLRAKTHIEK-KPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G RVVIELKR A +D++LN L++ T+++S F V M+A+N  +P+ F LI +LK 
Sbjct: 296 DESDKDGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAINNKEPKVFNLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +IR S +   AR  LM +
Sbjct: 356 FLNHRKTVIIRRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q  AIL++RL++LTGL R+ +  EL  L
Sbjct: 416 --------------------------FNLSELQANAILDMRLSKLTGLEREKLEAELAEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK+ELL +K++   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 MAEIARLDEILKSETLLENLIKEELLEIKNKFKVPRVTEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  + +    +  + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLIQLQPDEKIKAIIPTTDFD---ESKSLAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695
            LS+F  I   G  A+ LD  DE+++       +D                         
Sbjct: 627 NLSEFKNIRSVGVRAISLDENDELVTALIAQTYDDMPVTDPENELSVESEVLEIEEIQNE 686

Query: 696 -------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQV 735
                              + + TK G C++F IS +R   GR + GV GI   + GD+V
Sbjct: 687 IDEDSANAEEDTNSGDETMLFVVTKKGMCLKFKISKVRQM-GRTARGVTGIKFKEPGDEV 745

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +  A++   D                                                  
Sbjct: 746 VGAAVIESND-------------------------------------------------- 755

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
             Q IL++S+KG GKRT++ ++R++NR GKG+    ++     G LV V  V++   ++ 
Sbjct: 756 --QEILSISQKGIGKRTTADEYRLTNRGGKGVICMKLTSR--TGDLVGVVMVDEEQDLMA 811

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++  G +IRV +  IR A R T GV++ +   D+  VS+ R  +++  ++ +  
Sbjct: 812 LTSSGKMIRVDMQSIRKAGRNTSGVIVVNVDGDDV-VSIARCPKADDGEDEDEA 864


>gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074]
 gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074]
 gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074]
          Length = 875

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/929 (37%), Positives = 498/929 (53%), Gaps = 103/929 (11%)

Query: 1   MTEHIISSDEEEE---------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M +    S  E E           +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKP
Sbjct: 1   MADENNPSTPEIEIDAEGLPLAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKP 60

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L+
Sbjct: 61  VHRRVLYAMYDGGYRPEKGFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLV 120

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +  GNFGS   DP AA RYTEC++   +  ++ D+ ++TVDF  NYDG  +EP VL AR+
Sbjct: 121 DSNGNFGSPGNDPAAAMRYTECKMAPLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARF 180

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPT 227
           PN+L+NG  GIAVGMATNIP HNL EV  G    ++NP+ D    LDAL+E I+GPDFPT
Sbjct: 181 PNLLINGSAGIAVGMATNIPPHNLREVAAGAQWYLENPEADPDTLLDALIERIKGPDFPT 240

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
           GA+++GR GI+ AY TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+L
Sbjct: 241 GALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADL 299

Query: 288 VREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           V++ RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL  
Sbjct: 300 VKDARIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVD 359

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
             P   +L   ++ +VA + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR 
Sbjct: 360 GVPRTLSLDAFIRHWVAHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRA 419

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   + AR  LM+                           + + E+Q  AILE++L RL 
Sbjct: 420 SQTVDVARGGLME--------------------------LLEIDEIQANAILEMQLRRLA 453

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
            L R  I  E + L  +I E   IL+S  R   II +EL ++ D+    RR+ +V    D
Sbjct: 454 ALERQKIVAEHDDLQAKIDEYNAILASPERQRQIISEELAAIVDKFGEDRRSALVPFDGD 513

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           M  ED I  ED+VVT++  GYVKR     YR+Q+RGGKG  G  ++++D V   F+ +TH
Sbjct: 514 MSIEDLIAEEDIVVTITRGGYVKRTKTDDYRSQKRGGKGVRGTKLKEDDIVDHFFVSTTH 573

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +LFF++ G VY+ K + LP     ARG+ + N+L+    E I  I+   + +      
Sbjct: 574 HWLLFFTNKGRVYRAKAYELPDVGRDARGQHVANLLAFQPDESIAQILAIRDYD---AAP 630

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+V  TK G V++                  L   D                        
Sbjct: 631 YLVLGTKGGLVKKTP----------------LKDYDSPR--------------------- 653

Query: 707 RFPISAIRVFAGRNSVGVRGISLAK-----GDQVISMAIVLHADADYDERICYMKHMSAQ 761
                         S GV  I+L +      D++I   +V  AD D        + +   
Sbjct: 654 --------------SGGVIAINLRETPDGSDDELIGAELVS-ADDDLLLISKKAQSIRFT 698

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
               S       +            E     +     F+ T ++ G+ KRT   ++R+  
Sbjct: 699 ATDESLRPMGRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTGVDEYRVQG 758

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+A  + +  + G LV    V + D+I+ ++  G +IR  VNEIR   R T GV 
Sbjct: 759 RGGLGIKAAKIVE--DRGELVGALVVEETDEILAITLGGGVIRTRVNEIRETGRDTMGVQ 816

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +  K + VV + R  E+    E    +
Sbjct: 817 LINLGKRDAVVGIARNAEAGREAEEVDGD 845



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 50/254 (19%), Positives = 94/254 (37%), Gaps = 14/254 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +    +    +L           +L  S
Sbjct: 630 PYLVLGTKGGLVKKTPLKDYDSPRSGGVIAINLRETPDGSDDELIGAELVSADDDLLLIS 689

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +       +  P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 690 KKAQSIRFTATDESL-RPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 742

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+     E++      + ++IL  T  G  +R  +
Sbjct: 743 GGYAKRTGVDEYRVQGRGGLGIKAAKIVEDRGELVGALVVEETDEILAITLGGGVIRTRV 802

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + IR   GR+++GV+ I+L K D V+ +A    A  + +E    +    A     SG   
Sbjct: 803 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDLPADGADGEAASGTDG 861

Query: 771 EITSLKNDSSVEGN 784
           +  S    +     
Sbjct: 862 DTQSPAEGTEPSAE 875


>gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1]
 gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1]
          Length = 804

 Score =  790 bits (2039), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TKLAEEMLEDIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      +++V+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKR-VKRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           +  S +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDTSEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+A++ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT I +  +   +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKEEFLYLKQQYGDPRRTEITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +     S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673
           G+ +   L+L   E+I  +     D +      +V  TK G ++R  L +F       G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLNGDGND-----LVIVTKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E + +++ TK+G  +RFP+S +R   GRN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   +                                               
Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R    S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 96/252 (38%), Gaps = 15/252 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    R+      +   +E L V    +E+ ++  +  G     P+++ R    R   
Sbjct: 473 QQYGDPRRTEITDQSIQYNEEELIV----EEDVVITLSHNGYLKSTPLNSYRSQK-RGGK 527

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781
           G+    L + D+V  + +  +  +          ++    +L + G       +    ++
Sbjct: 528 GITVSKLTEDDEVEFVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839
           E          L      ++ V++ G  KRT+  +F    SNR   G+RA  +       
Sbjct: 588 EDTEKIVALASLNGDGNDLVIVTKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641

Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V+   VN   + ++V +  G  IR PV+++R   R   GV        + VVSV+ I 
Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701

Query: 899 ESEIVDEAESTE 910
             E  +    TE
Sbjct: 702 PGEEGEILTVTE 713


>gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/900 (37%), Positives = 490/900 (54%), Gaps = 94/900 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E     +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   +
Sbjct: 37  PEGAADKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 96

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   D  AA+
Sbjct: 97  RAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQ 156

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GIAVGMAT
Sbjct: 157 RYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMAT 216

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HN+ EV  G    +++P+   + L+E     + GPDFPTGA ILGR GI+  Y TG
Sbjct: 217 NIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTG 276

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-S 303
           RG I +R V ++E+    R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD+RDE S
Sbjct: 277 RGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETS 335

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G +  +V 
Sbjct: 336 GRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVK 395

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L +    
Sbjct: 396 HQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKE---- 451

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                  + + +VQ +AIL+++L +L  L    I++E + L  +
Sbjct: 452 ----------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAK 489

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542
           I E   IL S  R   +I +EL  +  +    RRT I+     DM  ED I  E+MVV++
Sbjct: 490 IAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSI 549

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR  +  YR+Q RGGKG  G  +R +D V  L  VSTH  +LFF++ G VY+ K
Sbjct: 550 TRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFGRVYRIK 609

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G V++  L
Sbjct: 610 TYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGR---APYLVLATRGGLVKKTPL 666

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +   +R   GR 
Sbjct: 667 LDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPM-GRA 725

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+     D +++M +V                                       
Sbjct: 726 TSGVTGMKFRDDDSLLTMDVVEEDG----------------------------------- 750

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++ TV++ GF KRT   ++R+ NR G GI+   +  +++ G 
Sbjct: 751 ------------------YVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL--VDDRGE 790

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L     V ++ ++++V   G ++R  V  +    R T GV+     K +R+V+V    E 
Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 13/259 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+ PL  Y   R  G     + +R+ D +    +VS    ++  S  G
Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAG--LIAIKLREGDELVSARVVSPDDDLILISHKG 707

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +     + + T+           + YV   T  G 
Sbjct: 708 QSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVE------EDGYVFTVTDGGF 760

Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + ++        G    KL     E+       ++ ++L+    G+ VR  ++ +
Sbjct: 761 AKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGV 820

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR+++GV      K D+++++ +    + +                     T+ + 
Sbjct: 821 -PAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVA 879

Query: 774 SLKNDSSVEGNISEERCQE 792
           + ++  + +     +  ++
Sbjct: 880 APEDALTQDAGEGADGGEQ 898


>gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 830

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/849 (40%), Positives = 526/849 (61%), Gaps = 35/849 (4%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E +     +  + I  + I DEM+NSY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M +
Sbjct: 17  EPLDIKPTDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKE 76

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
            G+ ++K Y K AR+ G+V+GKYHPHG+ A+YD+L RM Q++SLR  LI+GQGNFGS+DG
Sbjct: 77  AGMTYDKAYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDG 136

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ + ++ +L D+ K+TV +RPNYDGS +EP VL AR PN+L+NG  GI
Sbjct: 137 DSAAAMRYTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGI 196

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEV+D  + +I++P+  + +LMEI++GPDFPTG VILG  GIK+AY 
Sbjct: 197 AVGMATNMAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVILGHQGIKSAYE 256

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I IR V+ IE+   D+++IVV+E+PYQVNK+ ++E IA LVREK+IV I+DLRDE
Sbjct: 257 TGRGPIKIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDE 316

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RV IEL R  + +VILNQLY++T +Q+ F +  +AL    P   TL  +L+ ++
Sbjct: 317 SDRDGIRVSIELTRNTNPEVILNQLYKHTQMQTTFGIINLALVDNIPRELTLKELLQIYL 376

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+++R+ + + KA ++AH+L GL IA+ ++DEV+ +IR S   + A+  LM R  
Sbjct: 377 EHRIDVILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTR-- 434

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L EVQ +AIL++RL +LTGL R  I +E   L  
Sbjct: 435 ------------------------FGLDEVQAKAILDMRLQKLTGLERQKIEDEHGELVK 470

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I++  DI+ S  R   IIK+EL ++++     RRT I    ++ EDED I  E+++VT+
Sbjct: 471 LIEDLKDIIESDERKYSIIKEELHAIRERFADKRRTEITGSHVEFEDEDLIPVEEVIVTI 530

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++ GY+KR+P+  Y  Q RGGKG  G+  +++D V D+FI STH  ++FF++ G V+ +K
Sbjct: 531 TNSGYIKRMPVDTYSQQHRGGKGVIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKK 590

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ LP GS Q++GKA++N+L L + E +T  +   E E    + ++  AT+ G V++  L
Sbjct: 591 VYGLPEGSRQSKGKAVVNLLDLAENESVTATITVKEFE---EDKFLFMATRMGTVKKTPL 647

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           SDF  + ++G IA+KLD  DE+++V       +I++ ++ G+ +RF    +R   GR + 
Sbjct: 648 SDFSNVRKAGIIALKLDEGDELVNVALTDGSKEIMMVSRHGKAIRFCERDVRPM-GRTAR 706

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRG+ L   D V+S+ IV  +              +               +   +S+ 
Sbjct: 707 GVRGMRLTGDDIVVSLDIVDLSTKLLTITENGYGKRTTFDEYRGMKRGGQGVITIVTSLR 766

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                        +E  ++  S +G   R    D R   R+ +G++  +V   ++   +V
Sbjct: 767 NGPVINVKAV--KEEDEVMVTSSEGIFIRIPVKDIRAQGRNTQGVKIMNVRPGDK---VV 821

Query: 843 AVFPVNDND 851
            V  + + +
Sbjct: 822 GVARIKNEE 830


>gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
 gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58]
          Length = 898

 Score =  789 bits (2038), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/900 (37%), Positives = 489/900 (54%), Gaps = 94/900 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E     +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   +
Sbjct: 37  PEGAADKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 96

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   D  AA+
Sbjct: 97  RAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQ 156

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GIAVGMAT
Sbjct: 157 RYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMAT 216

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HN+ EV  G    +++P+   + L+E     + GPDFPTGA ILGR GI+  Y TG
Sbjct: 217 NIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTG 276

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-S 303
           RG I +R V ++E+    R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD+RDE S
Sbjct: 277 RGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETS 335

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G +  +V 
Sbjct: 336 GRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVK 395

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L +    
Sbjct: 396 HQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKE---- 451

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                  + + +VQ +AIL+++L +L  L    I++E + L  +
Sbjct: 452 ----------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAK 489

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542
           I E   IL S  R   +I +EL  +  +    RRT I+     DM  ED I  E+MVV++
Sbjct: 490 IAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSI 549

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR  +  YR+Q RGGKG  G  +R +D V     VSTH  +LFF++ G VY+ K
Sbjct: 550 TRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIK 609

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G V++  L
Sbjct: 610 TYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGR---APYLVLATRGGLVKKTPL 666

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +   +R   GR 
Sbjct: 667 LDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPM-GRA 725

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+     D +++M +V                                       
Sbjct: 726 TSGVTGMKFRDDDSLLTMDVVEEDG----------------------------------- 750

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++ TV++ GF KRT   ++R+ NR G GI+   +  +++ G 
Sbjct: 751 ------------------YVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL--VDDRGE 790

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L     V ++ ++++V   G ++R  V  +    R T GV+     K +R+V+V    E 
Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 13/259 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+ PL  Y   R  G     + +R+ D +    +VS    ++  S  G
Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAG--LIAIKLREGDELVSARVVSPDDDLILISHKG 707

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +     + + T+           + YV   T  G 
Sbjct: 708 QSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVE------EDGYVFTVTDGGF 760

Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + ++        G    KL     E+       ++ ++L+    G+ VR  ++ +
Sbjct: 761 AKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGV 820

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR+++GV      K D+++++ +    + +                     T+ + 
Sbjct: 821 -PAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVA 879

Query: 774 SLKNDSSVEGNISEERCQE 792
           + ++  + +     +  ++
Sbjct: 880 APEDALTQDAGEGADGGEQ 898


>gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000]
 gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000]
          Length = 832

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/890 (37%), Positives = 495/890 (55%), Gaps = 88/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGSVD DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+P H
Sbjct: 145 RMTKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  I+GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312
             IE+T  DRE IVV E+PY V K  + EKIAELV++ +I  +AD+RDES  + G R++I
Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L+  F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLWKHTDLEITFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N E AR  LM +            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSK------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL ++ ++    RR+ I       ++++ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKNIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  +
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     +     +   ++  TK G +++ +L       +
Sbjct: 599 KTSQGKSIKFILNLAPDEKITSYFTVSDFNPKQS---IIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE++ V      +D ++TT  G  +R     +R   GR + GV+GI+L 
Sbjct: 656 RGILALTLENNDELIGVSAVESGDDFIMTTASGLALRINEQKVRNM-GRAAAGVKGITLD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D  +S   +   ++                                            
Sbjct: 715 DNDICVSGNGIHKGES-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ ++E G GKR SS  F    R GKG         N+ G +V+V  V D 
Sbjct: 731 ---------LIVITENGIGKRLSSKQFNAKGRGGKGQIYIK--PDNKTGNVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D+I++V+     I++  + I    R  KGV I + +   +V  +  +   
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGAKVSDLAVVPAD 829


>gi|184199652|ref|YP_001853859.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
 gi|183579882|dbj|BAG28353.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 880

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/918 (37%), Positives = 509/918 (55%), Gaps = 98/918 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +    E     +  + +  EMQ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MVEDV----EVTSDRVEQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYTM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + + KCAR+ G+VMG YHPHG++AIYDAL R+ Q+W++R  L  GQGNFGS 
Sbjct: 57  YDGGYRPERSFNKCARVVGDVMGNYHPHGDSAIYDALVRLIQNWTMRYPLALGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTE ++   A  ++ D+ +DTVDF+ NYDG  QEP VL +R+PN+LVNG  
Sbjct: 117 GNDGAAAPRYTETKMAPLAMEMVRDIHEDTVDFQDNYDGKQQEPTVLPSRFPNLLVNGSA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV DG    + NPD+D    L+ L++ ++GPDFP+GA ILG  G
Sbjct: 177 GIAVGMATNIPPHNLREVADGVQWYLQNPDVDRETLLEELIKRVKGPDFPSGAQILGHKG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY TGRGSI  R V  +E+   +R  +VVTE+PYQVN   +  KIA+LV++ ++  I
Sbjct: 237 IEQAYRTGRGSITQRAVVSVEEI-HNRTCLVVTELPYQVNPDNLAIKIADLVKDGKVQGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+VI LKR A   V+LN LY++T LQ  FS NM+AL    P   +L 
Sbjct: 296 ADMRDETSGRTGQRLVIVLKRDAVPKVVLNNLYKHTQLQENFSANMLALVDGVPRTLSLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             +  +V+ + +V+VRRT+Y L +A++ AH+L+GL  A+  LDEV+ +IR SP  E AR 
Sbjct: 356 AFVHHWVSHQMDVIVRRTRYRLKQAQEEAHILLGLLKALDALDEVIALIRRSPTVEEARN 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + E Q +AIL ++L RL  L R  I++
Sbjct: 416 GLME--------------------------LLGIDEAQAQAILNMQLRRLAALERQKIQD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIV 534
               L   I E  +I++S +R  GII +EL  + +     RRT ++     D+  ED I 
Sbjct: 450 RHAELQRLIAEYEEIIASEARQRGIISEELAEIVERYGDDRRTEVLYGFDGDVSMEDLIP 509

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           ++ +VVT++  GYVKR     YRAQ RGG+G  G  +R +D V   F+ +TH  +LFF++
Sbjct: 510 QQQVVVTITRDGYVKRTRADEYRAQHRGGRGIKGAQLRGDDVVEHFFVTNTHNWILFFTT 569

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           LG VY+ K +        A+G+ + N++     ERI  +M         +  Y+V AT++
Sbjct: 570 LGRVYRVKAYEFVEAGRDAKGQHVANLMEFQPEERIAKVMELHSY---QDAPYLVLATRN 626

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA-- 712
           G V++++L+D+     +G IA+ L   DE++S      ++DI+L ++ GQ +RF      
Sbjct: 627 GLVKKSRLTDYDTNRSAGVIAINLRDDDELVSAMLVDTDDDIMLISRHGQSLRFTADDDA 686

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV G+    GD+++S  +V                               
Sbjct: 687 LRPM-GRATSGVTGMKFRSGDELLSANVVSD----------------------------- 716

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   +  +  V+E G+ KRT+  ++R+  R G GI+   +
Sbjct: 717 ------------------------DSHVFVVTEGGYAKRTAVQEYRVQGRGGLGIKVAKL 752

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +++           V +ND++++V + G ++R  V+E+    R T GV+      ++ +V
Sbjct: 753 AEVRGGLV--GGLIVGENDEVLVVMESGKVVRSTVSEVPARGRDTMGVIFAKPGPNDTIV 810

Query: 893 SVERIRESEIVDEAESTE 910
            V R  E EI  E    +
Sbjct: 811 GVARNAEREIEKEVAEED 828



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 104/281 (37%), Gaps = 19/281 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y   R  G     + +RD+D +    +V T   ++
Sbjct: 612 HSYQDAPYLVLATRNGLVKKSRLTDYDTNRSAG--VIAINLRDDDELVSAMLVDTDDDIM 669

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  + +  +    G+ + +           ++ +V  
Sbjct: 670 LISRHGQSLRFTADDDAL-RPMGRATSGVTGMKFRSGDELLSANVVS------DDSHVFV 722

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCV 706
            T+ G  +R  + ++ ++   G + +K+    E+           + +++L+  + G+ V
Sbjct: 723 VTEGGYAKRTAVQEY-RVQGRGGLGIKVAKLAEVRGGLVGGLIVGENDEVLVVMESGKVV 781

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  +S +    GR+++GV        D ++ +A     +A+ +      +  +A      
Sbjct: 782 RSTVSEV-PARGRDTMGVIFAKPGPNDTIVGVA----RNAEREIEKEVAEEDAADATGPG 836

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           G     T +  D SV     ++        +   L  ++ G
Sbjct: 837 GVVVAETDVAADGSVPEAEEQDGPASDAQNDAVALEDNDNG 877


>gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
 gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665]
          Length = 898

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/900 (37%), Positives = 489/900 (54%), Gaps = 94/900 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E     +  V +  EM+ SYL YA+ VI+GRA+PD+RDGLKPVHRR+L+ M   G   +
Sbjct: 37  PEGAADKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPD 96

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR+ G+VMG YHPHG+ AIYDAL R+ QDW  R  L  GQGNFGS   D  AA+
Sbjct: 97  RAFNKSARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQ 156

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++   A  ++ D+ +DTVD + NYDG  QEPVVL ARYPN+LVNG  GIAVGMAT
Sbjct: 157 RYTETKMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMAT 216

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HN+ EV  G    +++P+   + L+E     + GPDFPTGA ILGR GI+  Y TG
Sbjct: 217 NIPPHNMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQILGRKGIEEVYRTG 276

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-S 303
           RG I +R V ++E+    R  +VVTE+PY  N   +  KIAE+VR+ +I  IAD+RDE S
Sbjct: 277 RGPITMRAVVNVEEIQ-GRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIADMRDETS 335

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G R+VI LKR A A V+LN LY++T LQS FS NM+AL    P   +L G +  +V 
Sbjct: 336 GRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANMLALVDGVPRTLSLDGFVHHWVK 395

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + +V+VRRT +   KA +RAH+L GL  A+  LDEV+  IR S + + AR  L +    
Sbjct: 396 HQIDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKE---- 451

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                  + + +VQ +AIL+++L +L  L    I++E + L  +
Sbjct: 452 ----------------------LLDIDDVQAQAILQMQLRQLAALESQKIQDEYDDLMAK 489

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542
           I E   IL S  R   +I +EL  +  +    RRT I+     DM  ED I  E+MVV++
Sbjct: 490 IAEYNRILESPQRQREVISEELAEIVAKHGDDRRTEIMAGFDGDMSIEDLIPEEEMVVSI 549

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GYVKR  +  YR+Q RGGKG  G  +R +D V     VSTH  +LFF++ G VY+ K
Sbjct: 550 TRGGYVKRTRIDQYRSQARGGKGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIK 609

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + L      A+G+ + N+L+    ERI  I P  +        Y+V AT+ G V++  L
Sbjct: 610 TYELLEAGRDAKGQHVANLLAFQPDERIAQIQPLVDYGR---APYLVLATRGGLVKKTPL 666

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
            D+     +G IA+KL   DE++S    + ++D++L +  GQ +RF  +   +R   GR 
Sbjct: 667 LDYDTNRTAGLIAIKLREGDELVSARVVSPDDDLILISHKGQSLRFTATDEALRPM-GRA 725

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+     D +++M +V                                       
Sbjct: 726 TSGVTGMKFRDDDSLLTMDVVEEDG----------------------------------- 750

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                             ++ TV++ GF KRT   ++R+ NR G GI+   +  +++ G 
Sbjct: 751 ------------------YVFTVTDGGFAKRTHVDEYRLQNRGGLGIKVAKL--VDDRGE 790

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L     V ++ ++++V   G ++R  V  +    R T GV+     K +R+V+V    E 
Sbjct: 791 LAGGLVVREDQEVLVVMASGKVVRSAVAGVPAKGRDTMGVIFAKPDKRDRIVAVTLNNEQ 850



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 13/259 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V  +  G VK+ PL  Y   R  G     + +R+ D +    +VS    ++  S  G
Sbjct: 650 PYLVLATRGGLVKKTPLLDYDTNRTAG--LIAIKLREGDELVSARVVSPDDDLILISHKG 707

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
              +       +  P  R  + +  +     + + T+           + YV   T  G 
Sbjct: 708 QSLRFTATDEAL-RPMGRATSGVTGMKFRDDDSLLTMDVVE------EDGYVFTVTDGGF 760

Query: 657 VRRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            +R  + ++        G    KL     E+       ++ ++L+    G+ VR  ++ +
Sbjct: 761 AKRTHVDEYRLQNRGGLGIKVAKLVDDRGELAGGLVVREDQEVLVVMASGKVVRSAVAGV 820

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               GR+++GV      K D+++++ +    + +                     T+ + 
Sbjct: 821 -PAKGRDTMGVIFAKPDKRDRIVAVTLNNEQEMEAKADAEAEAGPDVPLDADIDPTDPVA 879

Query: 774 SLKNDSSVEGNISEERCQE 792
           + ++  + +     +  ++
Sbjct: 880 APEDALTQDAGEGADGGEQ 898


>gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411]
 gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411]
          Length = 812

 Score =  789 bits (2037), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/892 (40%), Positives = 524/892 (58%), Gaps = 89/892 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +K I  V I D MQ SYL Y+++VI+GRAIPD RDGLKPVHRRIL+ M ++ +E NK Y
Sbjct: 6   SDKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YDAL RM+QD+S+R  LI+GQGNFGS+DGD PAA RYT
Sbjct: 66  KKSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L DL K++VDF PNYD S +EP VL    PN+L+NG  GIAVG AT IP
Sbjct: 126 EVRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIP 185

Query: 192 THNLGEVVDGCVA-VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            +NL E++D C+A +  + +I  D ++  I+GPDFPTG +      IK AY  G G I +
Sbjct: 186 PNNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIKSIKEAYKKGIGKITL 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     EK   +R+ +VV EIPYQVNKA +L+ IA+LV++K++  IADLRDES+++G R+
Sbjct: 246 RAKVKEEKIK-NRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+K+     VILN+L++YT+LQ+ F VNM+AL G  P    +   +  FV  R +VV 
Sbjct: 305 VIEIKKDEQPKVILNKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVK 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT +LL+KA+DRAH+L GL I + N+DEVV II+ S + + AR  L +R          
Sbjct: 365 RRTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKER---------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ QT+AIL+++LARL  L +  + +E N +  +I+    I
Sbjct: 415 ----------------FKLSDRQTQAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L  RS L G+IK EL+ VK      R+T+I++ ++D+  ED I  E +++T S  GYVK 
Sbjct: 459 LKDRSVLKGVIKDELVYVKQTYADERKTQILDSIVDIGIEDVIKDEQLIITFSKKGYVKA 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VPL VY  Q RGGKGR      D D++TD+F+ ++  ++L F++LG VY  K + +P  S
Sbjct: 519 VPLDVYSTQHRGGKGRMAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQS 578

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           P A+G+ ++NIL+L   E + TI+P            + FAT  G V+R+    F  I  
Sbjct: 579 PSAKGRPIVNILNLQPQEFVKTIVPIS------EADSLFFATAAGTVKRSSFRHFENIPS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +GKIA++L+ +D ++SV +  + +++++TT+ G CVRF   ++R   GR + GVRGI+L+
Sbjct: 633 NGKIAIRLNEQDSLVSVFSVAEGDEVIITTRRGMCVRFDSDSVRDM-GRAAAGVRGINLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+S                                                     
Sbjct: 692 EGDSVVSA---------------------------------------------------F 700

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
              + K   ++ VS+ G GK     D R  NR  KG+R   + +     ++     + D 
Sbjct: 701 NFNQDKHTKLIVVSQTGLGKLLRVSDIRKVNRGAKGVRCIKLKE---NDSVAGSLSLKDT 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             +I+V+  G +I++  + I + SRA +GV + +  + + VVS+      + 
Sbjct: 758 GDVIVVTKNGKMIKMDADSINVFSRAARGVKLINLDEADSVVSIVVAGSEDE 809



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 112/354 (31%), Gaps = 77/354 (21%)

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +     N+ +      +  +   P   +  + + V    +   V+R       +     
Sbjct: 319 NKLFKYTNLQTTFGVNMMALVGNTPRLLNIKDAIGVFVEHRIDVVKRRTSFLLSKAKDRA 378

Query: 673 KIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            I     + LD+ DE++++   +Q        +     RF +S       R +  +  + 
Sbjct: 379 HILEGLLITLDNIDEVVAIIKSSQSTQ---EARSRLKERFKLSD------RQTQAILDMK 429

Query: 729 LA-----KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           LA     +  ++I     VL     Y+  +     +    +      ++  + +  + + 
Sbjct: 430 LARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQTYADERKTQIL 489

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG---------------- 826
            +I +   +++   EQ I+T S+KG+ K      +   +R GKG                
Sbjct: 490 DSIVDIGIEDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGRMAATFSDNDYITDIF 549

Query: 827 -------------------IRATDVSKINEIGA---------------LVAVFPVNDNDQ 852
                              ++A ++ K +                   +  + P+++ D 
Sbjct: 550 LTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNLQPQEFVKTIVPISEADS 609

Query: 853 IILVSDKGTLIRVPV---NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +   +  GT+ R        I    +           + + +VSV  + E + V
Sbjct: 610 LFFATAAGTVKRSSFRHFENIPSNGKIA-----IRLNEQDSLVSVFSVAEGDEV 658


>gi|291457884|ref|ZP_06597274.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419428|gb|EFE93147.1| DNA gyrase, A subunit [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 827

 Score =  788 bits (2036), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/896 (36%), Positives = 509/896 (56%), Gaps = 93/896 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+NSY+ YA++VI+ RAIPD+RDGLKPV RR+L+ +  +GV  +
Sbjct: 2   EPNIFDKVQDVDLKKTMENSYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYSLQSLGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KK  KCA I GE MGKYHPHG+++IY AL  M Q WS+R +LI+ QGNFGS DGD PAA 
Sbjct: 62  KKTKKCATIVGETMGKYHPHGDSSIYGALVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ + A  +L  + KDTVDF PN+   ++EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEAKMSRIAAEMLFGINKDTVDFMPNFSNEYEEPTVLPARFPNLLVNGATGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HNL EV+D    +I +     + +LD +++ I+GPDFPTGA+ILGR GI+ AY +G
Sbjct: 182 NIPPHNLREVIDALDLIISDRIEGRETELDEIIKKIKGPDFPTGALILGRRGIEEAYRSG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R V  IE     + +I+V E+PY V ++ ++EK+AELV++K+I  I  + D + 
Sbjct: 242 RGKIKMRAVCEIEPMQSGKHRILVKELPYLVCRSRIIEKVAELVKDKKIDGITFINDAAG 301

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +    ++ IEL++ A+ +VILNQLY++T LQ  F V M+ +   +P    L  +L  F+ 
Sbjct: 302 KGSSAKINIELRKDANPNVILNQLYKHTQLQDTFGVIMLCIVNGEPRILNLQEMLNEFLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +  VV RRT+Y LNK  +RAH+L GL  A+ ++DE+VRIIR +   E A+++L+ R   
Sbjct: 362 HQINVVTRRTRYDLNKCEERAHILEGLLKALDHIDEIVRIIRAADTVEKAKQDLIAR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     S+ Q +AI+++RL  LTGL R  +++E   L   
Sbjct: 419 -----------------------FAFSDAQAQAIVDMRLRALTGLERGRLQSEYEELLRR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I    +ILS +  LL +I++EL  +K++    RRT+       ++DED I  +D+V++ +
Sbjct: 456 IARYREILSDQRELLSVIREELTQLKEKFGEKRRTQFA-FDDALDDEDLIPDDDIVISST 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    +R Q RGGKG  G+   D D + DLF+ + H  ++ F++ G  ++ K 
Sbjct: 515 RLGYIKRMSPENFRQQNRGGKGIRGMQTLDNDNIEDLFMSTNHHYIMLFTNKGRCFRIKG 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  +RG AL+N+L L   ER+       +     +  Y+V ATK G V++  LS
Sbjct: 575 YEIPEASRTSRGTALVNLLKLQPEERVNACFSLRDLS---SEQYLVLATKSGLVKKTPLS 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +  + ++G IAM +   D+++  +      +I+L TK G  +RF    IR   GR+++G
Sbjct: 632 QYANVRKNGLIAMNIREDDQLIEAKLVDPGEEIMLVTKKGMAIRFREEDIRS-TGRSAMG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI L  GD++I M  +                                          
Sbjct: 691 VRGIRLDSGDELIGMQKLSQGG-------------------------------------- 712

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++L VSEKG+GK T++ +F+  NR GKG+    +++  + G LV 
Sbjct: 713 ---------------YLLLVSEKGYGKLTATEEFKPQNRGGKGLHCYRITE--KTGDLVG 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVV-SVERI 897
               + + +I+L++ +G LIR+ + ++ +  R T GV         + V+ S+ ++
Sbjct: 756 FKLCDQDREIMLITSEGILIRMSLEKVSVIGRNTSGVKFMDLPKNGDTVIASIAKV 811


>gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8]
 gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II
           subunit A
 gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  788 bits (2035), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/887 (38%), Positives = 529/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMAQ +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+D+ K+TV+   N+DG+ +EP VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           + A+ +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+AR+ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT + +  ++  +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +    +S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673
           G+ +   L+L   E+I  +              +V ATK G ++R  L +F       G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLN-----GEGRDLVIATKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E + +++ TK+G  +RFP+S +R   GRN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   +                                               
Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R    S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 99/252 (39%), Gaps = 15/252 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    R+      ++  +E L V    +E+ ++  +  G     P+++ R    R   
Sbjct: 473 QQYGDPRRTEVTDQSIEYNEEELIV----EEDVVITLSHKGYLKSTPLNSYRSQK-RGGK 527

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781
           G+    L++ D+V  + +  +  +          ++    +L + G       +    ++
Sbjct: 528 GITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839
           E          L  + + ++  ++ G  KRT+  +F    SNR   G+RA  +       
Sbjct: 588 EDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641

Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V+   VN   + ++V +  G  IR PV+++R   R   GV        + VVSV+ I 
Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701

Query: 899 ESEIVDEAESTE 910
             E  +    TE
Sbjct: 702 PGEEGEILTVTE 713


>gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64]
 gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER]
 gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64]
          Length = 926

 Score =  788 bits (2034), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/896 (39%), Positives = 531/896 (59%), Gaps = 84/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + GI  V +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ +  
Sbjct: 75  DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 134

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  L++G GNFGS+DGD  AA R
Sbjct: 135 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 194

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD S +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 195 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 254

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  +A+ +NP+ID+  LME + GPDFPTGA+ILG  GIK+AY TG+GSI 
Sbjct: 255 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIP 314

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR ++ IE+ S  + +I+VTEIPY+V K A++EKIAELV++K+I  IADLRDES R+G R
Sbjct: 315 IRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIR 374

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+  +  V+LN+LYR T+LQ  ++VN VAL   +P+   L   L+ ++  +EEVV
Sbjct: 375 IVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVV 434

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KA+DR H+L GL IAV N+DEV+ II+ S     A+  L +R         
Sbjct: 435 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR--------- 485

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLTGL  +++  E+  L  EI+    
Sbjct: 486 -----------------FNLTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEF 528

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++ S L+ +I +EL  +K++ +  RRT+I       + DED I + D+V+T S  G+V
Sbjct: 529 ILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTITDEDLIPQRDIVITTSAKGFV 588

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G   +   D+D +  +   +THT +L FS+   VY+ +   +P 
Sbjct: 589 KRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPE 648

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G A INI+   + +    I+     ++   + Y+  ATK+G +++ +L+++ +I
Sbjct: 649 LSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERI 708

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++     T E+ ILL     + V+F     R  + R + GV+GI+
Sbjct: 709 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 767

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L     V S                                                   
Sbjct: 768 LDSHQTVSS--------------------------------------------------- 776

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + ILT+ +KGFGK T    FR+  R GKG++  +       G +V    VN
Sbjct: 777 --TSTSQEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSK---LAGDIVFARFVN 831

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             D++++++  G  IR  +++I    RA KGV I +  K E + +VE I+  E  D
Sbjct: 832 PQDELLIITTSGLTIRTAISQISQTGRAAKGVKIINLKKREEIQAVEIIKIDEKTD 887



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 80/301 (26%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------GRNSVGVRGISL 729
           + +++ DE++++   ++ +      +     RF ++  +  A      GR +       L
Sbjct: 457 IAVENIDEVIAIIKKSKTD---GEAQANLAKRFNLTEKQTKAIVDMRLGRLTG------L 507

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A  + +  MA +       +  +     +         + +E  + K  + +   I    
Sbjct: 508 AIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTI 567

Query: 790 CQE-LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV---------------- 832
             E L  +   ++T S KGF KR    +++   R G GI                     
Sbjct: 568 TDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHT 627

Query: 833 ------------------------------------SKINEIGA-LVAVFPVNDNDQ--- 852
                                               S   + G  +V++ PV+  D+   
Sbjct: 628 DLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHY 687

Query: 853 IILVSDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +   +  G + +  + E   I    +       F+  + + ++    I + +++  A   
Sbjct: 688 LFTATKNGIIKKTRLTEYERINANGKYA-----FNLREGDELIRAMIITDEDLILLANDE 742

Query: 910 E 910
           E
Sbjct: 743 E 743


>gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
 gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1]
          Length = 834

 Score =  787 bits (2033), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/893 (37%), Positives = 499/893 (55%), Gaps = 88/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+P H
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  ++GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312
             +E+T  DRE IVV E+PY V K  + EKIA+LV++ +I  +AD+RDES  + G R++I
Sbjct: 265 LEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L++ F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLWKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR  LM R            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL  + ++    RR+ I       ++++ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  S
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALS 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     E +   +   ++  TK G +++ +L       +
Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE+++V      +D ++TT  G  +R     IR   GR + GV+GISL 
Sbjct: 656 RGILALTLENNDELVAVSPVQTGDDFIMTTAAGLALRITEEKIRKM-GRAAAGVKGISLD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D  +S   +   ++                                            
Sbjct: 715 DDDICVSGNAIHKGES-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ ++E G GKR SS  F +  R GKG         N+ G +V+V  V D 
Sbjct: 731 ---------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIK--PDNKTGNVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+I++V+     I++  + I    R  KGV I + +   RV  +  +      
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPADNEE 832


>gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 808

 Score =  786 bits (2030), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/889 (38%), Positives = 506/889 (56%), Gaps = 86/889 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   +I DE+ NSY+ Y+++VI+GRAIPDLRDGLKPV RRILFGM ++G+  N+ + K
Sbjct: 3   EEIIHKNIDDELINSYMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEVMGK+HPHG+AAIYDAL RMAQ +S+R  L+EGQGNFGS+D DPPAA RYTE 
Sbjct: 63  SARIVGEVMGKFHPHGDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++  A  LL D+ K+TV   PN+DGS  EP VL  + PN+L+NG  GIAVGM T+IP H
Sbjct: 123 RMETLAEELLQDIDKNTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++D    +I +P+  +  L+  I+GPDFPTG +I+    I + Y  G+G I +R +
Sbjct: 183 NLVEIIDAISLLIKDPECSVSDLLRHIKGPDFPTGGMIMDAASIPSIYQEGKGRITVRAI 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+ SG   QIVV+EIPY  +KA ++E+I    +  R + I ++RDESD++G RVVIE
Sbjct: 243 AEIEE-SGGSSQIVVSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRR 372
           LKRGA  +V+LN L+++T LQ+ FSVNM+ ++  K P    L  IL+ F++ R  V+  +
Sbjct: 302 LKRGADPNVVLNLLFKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSK 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L +A  RAH++ GL  A  ++D VV IIR S N E A + LM+             
Sbjct: 362 TEYDLEQASKRAHIVEGLTKATRSIDTVVDIIRNSANSEEASKNLME------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T+ +++ Q+ AIL++R+ +LTG+  + + NE   L  +I E   IL+
Sbjct: 409 -------------TLEVTQEQSSAILDMRMGKLTGMEIEKLLNEYKDLVAKINEYRMILA 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRV 551
           S  ++ GII  EL  +K +    RRTRI  G   D   ED I  ED+V+ V+  GY+K  
Sbjct: 456 SDEKVYGIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKST 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL  YR Q RGGKG  GV   DEDFV ++   +  +  +  +S G  Y      +   S 
Sbjct: 516 PLESYRKQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSR 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ++GK L N + ++  E +  ++   ++E       +V  T+ G +++ +   F+ +  S
Sbjct: 576 DSKGKLLANYIKIDPDENVQAVLSTRKEE--VQGKQLVITTRSGKIKKTEFEAFLNVRIS 633

Query: 672 GKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           G  A+ L+  D ++     + +++ I+++TK G  +RFP+  +R   GR++ GV GI L 
Sbjct: 634 GIKAISLNEGDRVIDASLTSREDDTIIISTKNGMVIRFPLDQVRSM-GRSAAGVMGIRLK 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D+V+   IV   D                                             
Sbjct: 693 KNDEVVGANIVASEDTR------------------------------------------- 709

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                   F+LT +EKG GKRT   ++R  NR G G++     +  +IG ++    VN +
Sbjct: 710 --------FLLTATEKGGGKRTCLSEYRSQNRGGLGVKNIYGLE--KIGKVIGTLVVNSD 759

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           D++IL +  G  IR+PV+++R   R TKGV I     ++   S+  + +
Sbjct: 760 DEVILATKLGMSIRIPVSQVRPTGRVTKGVRIVDLKDNDIAASMAVVVD 808



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  +    +    E+ +L+ TK G     P+ + R   GR   GV G+     D V
Sbjct: 483 IDLGNGTDFNIEDVIPDEDIVLMVTKKGYIKSTPLESYR-KQGRGGKGVIGVRTGDEDFV 541

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +++                  ++ +   +     +    L  +          +      
Sbjct: 542 VNILTTTRLSKTVIITSKGKAYVLSNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTR 601

Query: 796 KEQ----FILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           KE+     ++  +  G  K+T    F   RIS     GI+A  +++ + +    A     
Sbjct: 602 KEEVQGKQLVITTRSGKIKKTEFEAFLNVRIS-----GIKAISLNEGDRVID--ASLTSR 654

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++D II+ +  G +IR P++++R   R+  GV+     K++ VV    +   +
Sbjct: 655 EDDTIIISTKNGMVIRFPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASED 707



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 62/221 (28%), Gaps = 62/221 (28%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V   +          K        ++    +    +      GN ++   +++   E 
Sbjct: 442 DLVAKINEYRMILASDEKVYGIILDELNEIKAKYGDARRTRIDLGNGTDFNIEDVIPDED 501

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-------------------------- 832
            +L V++KG+ K T    +R   R GKG+                               
Sbjct: 502 IVLMVTKKGYIKSTPLESYRKQGRGGKGVIGVRTGDEDFVVNILTTTRLSKTVIITSKGK 561

Query: 833 -----------SKINEIGALVAVFPVNDNDQ-----------------IILVSDKGTLIR 864
                      S  +  G L+A +   D D+                 +++ +  G + +
Sbjct: 562 AYVLSNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTRKEEVQGKQLVITTRSGKIKK 621

Query: 865 VPVN---EIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                   +RI      G+   S  + +RV+        + 
Sbjct: 622 TEFEAFLNVRI-----SGIKAISLNEGDRVIDASLTSREDD 657


>gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
 gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912]
          Length = 810

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/840 (42%), Positives = 523/840 (62%), Gaps = 32/840 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  V I++E++ S+L YA++VI+ RAIPD+RDGLKPVHRRIL+ M  +G+  +K Y
Sbjct: 3   DPGKILPVDISEELRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G+V+ K+HPHG+AA+YDAL R+AQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 63  KKSAWVVGQVLAKFHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 123 EARLSKIALELLRDIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +ID+PD  ++ LM+ I+GPDFPTGA+ILGR GI +AY TGRGSI++R
Sbjct: 183 PHNLGEVIDGVIHLIDHPDAGVEELMQHIKGPDFPTGALILGREGILDAYRTGRGSIILR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ SG + +IVVTEIPYQVNKA ++EKIAELVREKRI  I DLRDESDR+G R+V
Sbjct: 243 AATQIEEASGGKTRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+R     V+LN L+++T+LQ+ + V M+ L   +P    L  +L+ ++  +E+V+ R
Sbjct: 303 IELRRDVKPRVVLNNLFKHTALQTSYGVIMLCLVDGRPRVLNLGEMLRYYLRHQEDVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT Y L KA  RAH+L GL IA+ ++D V+ +IR S   E AR  L+++           
Sbjct: 363 RTTYDLKKAEARAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQ----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                           +LSE Q +AIL++RL RLTGL R  I  E   L  +IKE   IL
Sbjct: 412 ---------------FHLSEEQAQAILDMRLQRLTGLERQKIDEEYAELVEKIKELRAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +   ++LG+I++ELL +K +    RRTRI  G  ++EDED I  E++ VT+SH GY+KR 
Sbjct: 457 ADEKKILGVIREELLDIKAKYGDERRTRITAGEGEIEDEDLIPMEEVAVTLSHDGYIKRQ 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+S+Y++QRRGG+G + +  ++EDFV  LFI S+H  +LFF++ G VY+ K + +P    
Sbjct: 517 PMSLYKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVYRLKAYEVPELGR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  ++N+L+++QGE+I+ ++P      +    Y++ AT+ G +++  L +F  I R 
Sbjct: 577 AAKGTPIVNLLNVDQGEKISAVVPIRS---TDGGQYLIMATREGTIKKTPLDEFENIRRG 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G +A+ L   DE+++V       +++L T+ G  +RFP + +R   GR + GV+ + L  
Sbjct: 634 GLVAISLRENDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSM-GRGAAGVKAVDLQG 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD VI M +V                 +                     V          
Sbjct: 693 GDVVIDMDVVDPDGDVLVVTNRGFGKRTPI--TEYRHQSRGGKGIRTLHVTARTGSVVSL 750

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           ++   ++ ++ ++  G   R    +  +  R+ +G++   + +  E+  +  V    + +
Sbjct: 751 KMVRNDEDVMVITTTGIAIRMHVDEISVQGRNTQGVKLITLKEDEEVSTVAKVVCAGEGN 810



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 81/245 (33%), Gaps = 61/245 (24%)

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           V  +  G ++R  +S +    R   G  AM     D +  +   +  + +L  T  G+  
Sbjct: 505 VTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHLFITSSHHYLLFFTNKGKVY 564

Query: 707 RFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           R     +    GR + G   V  +++ +G+++ ++  +   D                  
Sbjct: 565 RLKAYEVPEL-GRAAKGTPIVNLLNVDQGEKISAVVPIRSTD------------------ 605

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                             Q+++  + +G  K+T   +F    R 
Sbjct: 606 --------------------------------GGQYLIMATREGTIKKTPLDEFENIRRG 633

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G+ A  + +      L+AV   + + ++IL +  G  IR P  ++R   R   GV   
Sbjct: 634 --GLVAISLRE---NDELIAVRMTDGSRELILGTRSGMAIRFPETDVRSMGRGAAGVKAV 688

Query: 884 STAKD 888
                
Sbjct: 689 DLQGG 693


>gi|257067233|ref|YP_003153488.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
 gi|256558051|gb|ACU83898.1| DNA gyrase subunit A [Brachybacterium faecium DSM 4810]
          Length = 943

 Score =  785 bits (2028), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/900 (37%), Positives = 489/900 (54%), Gaps = 101/900 (11%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE E   IT + +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRI++ M   G  
Sbjct: 61  PLDESEVDRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYR 120

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ + KCA++ GEVMG YHPHG++AIYDA+ R+ Q WS+R  LI GQGNFGS   D  A
Sbjct: 121 PDRSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGAA 180

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTEC++   A  L+ D+ +DTVD + NYD +  EP VL AR+PN+LVNG  GIAVGM
Sbjct: 181 APRYTECKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGM 240

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNL EV D    ++ N +          ++ I+GPDFP+GA I+G +GI++AY 
Sbjct: 241 ATNIPPHNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSGIEDAYR 300

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI  R V   E+    R  +VVTE+PYQVN   +  KIAE+V+  +I  IAD+ DE
Sbjct: 301 TGRGSITQRAVVSTEEI-NGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDE 359

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            S R G R+VI LKR A A V+LN LY++T LQ  FS NM+AL    P   ++   ++ +
Sbjct: 360 TSGRTGQRLVITLKRDAVAKVVLNNLYKHTQLQENFSANMLALANGVPRTLSIDSFVREW 419

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              + +V+VRRTK+ L KA ++ H+  G   A+  LDEV+ +IR SP+ + AR  LM   
Sbjct: 420 TKHQIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLM--- 476

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + + E+Q  AIL ++L RL  L R  I  E + L 
Sbjct: 477 -----------------------DLLEIDEIQANAILAMQLRRLAALERQKIIEEHDRLQ 513

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I+E   IL+   R   I+ +EL  + D     RRT I+    DME ED I  EDMVVT
Sbjct: 514 ALIEEYTAILADPQRQRDIVSEELAEIVDRFGDDRRTEILPFAGDMEMEDLIPEEDMVVT 573

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GYVKR     YRAQ+RGGKG  G  +R++D V   F  +TH  +LFF++ G VY+ 
Sbjct: 574 ITRGGYVKRTREDQYRAQKRGGKGVRGASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRA 633

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     A+G+ + N+++    E I +++     E   +  ++V AT+ G V++  
Sbjct: 634 KGYELPEAPRDAKGQHVANLMAFQPDENIASVLAIDSYE---DAQHLVLATESGLVKKTP 690

Query: 662 LSDFIQINRSGKIAMKLDS--------RDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
           +  F      G IA+ L           D ++S      +++ILL ++ GQ VRFP    
Sbjct: 691 MPAFDSSRTGGIIAINLRDIDGPEGPQPDRVISARAVNSDDEILLVSRNGQSVRFPADDG 750

Query: 713 -IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR + GV G+     D +++M ++                              
Sbjct: 751 TLRP-TGRATSGVTGMKFRHQDTLLAMDVIRP---------------------------- 781

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                    + F++TV++ GF KRT+  ++R+  R G GIR   
Sbjct: 782 -------------------------DSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAK 816

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +   ++ G LV    V + D++++V ++G ++R  V E+    R T GVV     K +R+
Sbjct: 817 LP--DDRGHLVGAAVVEETDELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRI 874


>gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
 gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053]
          Length = 875

 Score =  785 bits (2027), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/846 (41%), Positives = 516/846 (60%), Gaps = 33/846 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + I  ++I DEM+ +Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM  +GV +N+
Sbjct: 3   ESSGENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI GEV+GKYHPHG++++Y+ + RMAQ WSLR  L++GQGNFGSVDGD PAA R
Sbjct: 63  AHKKSARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL++ A  LL DL KDTVDF+PN+D S  EP VL A++PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVVDG +A IDN +I +  LME ++ PDFPTG +I G  G+++A  TGRGSI+
Sbjct: 183 MAPHNLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIYGYNGVRSAMETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +  E +   REQI+VTEIPY +NKAAM+E+IA L+ +K++  I+D+RDESDR+G R
Sbjct: 243 MRSKAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V +LK+ A  +++LN L++YT LQ+ F VN VAL   +P    L  ++K +V  R  V+
Sbjct: 303 IVFDLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGRPVLLNLKDLIKHYVDHRIVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L +A  RAH+L GL IA+ NLD V+ +IR + +PETA+  LM++         
Sbjct: 363 TRRTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q RAIL++RL RLTGL R+ I  E   + I I +  D
Sbjct: 414 -----------------FELSEIQARAILDMRLQRLTGLEREKIVKEYEEIMILIADLKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL++  R   IIK EL  +K+     RRT+I     +  DED I  E+M++T+S  GY+K
Sbjct: 457 ILANEYRKYEIIKTELTDIKERYGDARRTQIEFSAEEFSDEDMIADEEMLITISKEGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R PLS YR Q RGG G  GV  +D DF   LF  +    +L F+  G ++  KV+ +P G
Sbjct: 517 RTPLSEYRTQTRGGVGSRGVKTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           S  ++G+ + N++SL  G+ I +++      DE   NN Y++  T+ G +++  L  + +
Sbjct: 577 SKTSKGRPIQNLISLESGDSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSR 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +G IA+ ++  D +L+V     +NDI++ +  G+ VRF    +R   GR + GVRGI
Sbjct: 637 PRTNGIIAISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPM-GRTAAGVRGI 695

Query: 728 SLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           +L   D +VI M  +   DA             +              +   ++ +    
Sbjct: 696 NLNDPDNKVIGMVCISREDAQLLVVSENGFGKRSAIDSYRVTNRGGKGVSTMNATDKVGK 755

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               +E+  +E  ++ ++  G   R S  D R + R+ +G++   +S  +EI ++     
Sbjct: 756 LVAIREV-TEEDDLMIITRNGIAIRMSVLDIRQAGRNTQGVKLIRLSSSDEITSV--TRI 812

Query: 847 VNDNDQ 852
           + D D+
Sbjct: 813 LKDPDE 818


>gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae]
 gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae]
          Length = 919

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/902 (38%), Positives = 532/902 (58%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  EIEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+G GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  IADLRDES+R G R
Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA DR H+L GL IAV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLRFDLNKANDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSAR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+   +
Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDGMIEEMQNLAAEIERITN 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL++R  L+ +I  EL  +K++    RRT I + +   + DED I + D+V+T S  GYV
Sbjct: 523 ILANRDLLIDLIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D ++ +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            + Q++G + INI+   + +    ++     +   ++ Y+  ATK G +++  LS+F  I
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQII 702

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++       +  ILL     + V+F  +  R  + R + GV+GI+
Sbjct: 703 NINGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVKGIT 761

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+ +  IS +     +                                           
Sbjct: 762 LAEDETCISASSSSEGE------------------------------------------- 778

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILT+ + GFGK T    FR+ +R GKG+   +    ++ G LV    VN
Sbjct: 779 ----------LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFARFVN 825

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE ++        E+
Sbjct: 826 PHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESDSTLDET 885

Query: 909 TE 910
            E
Sbjct: 886 IE 887



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 123/362 (33%), Gaps = 22/362 (6%)

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  +  ID   Y     G + ++ ++T    ++     T    D +    +     I+ 
Sbjct: 578 TKGYVKRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRA 637

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
                 +R          +  +K +          E ++ M   D    +  + T + LG
Sbjct: 638 HEIPELNRQSKGTSFINIIPRLKVD--------EGEKVISMLAVDEYSDDKYLFTATKLG 689

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +K+  LS ++     GK    +   DE     L   S               +   +  
Sbjct: 690 IIKKTSLSEFQIININGKRAFNLKEEDE-----LIRASIIDDDELILLANSKQRIVKFHS 744

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 +R    +  ++L + E            SS     ++   K+G  +    S F 
Sbjct: 745 NEFRALSRIATGVKGITLAEDE------TCISASSSSEGELILTIGKNGFGKITHHSLFR 798

Query: 667 QINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            ++R GK  + ++S     ++        ++IL+ T  G  +R PI  I    GR + GV
Sbjct: 799 LVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMITTSGLTIRIPIKDINE-TGRATKGV 857

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L K +Q+ ++ IV        +     +      +  + +        N+ ++E +
Sbjct: 858 KLINLKKKEQIQAVEIVKLESDSTLDETIEDEKFIDDIKNQTKEILLDKGDINEETIEID 917

Query: 785 IS 786
           I 
Sbjct: 918 ID 919


>gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
 gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 903]
          Length = 818

 Score =  785 bits (2026), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/839 (41%), Positives = 520/839 (61%), Gaps = 35/839 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D    +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDR--SDEAYLFFTTRQGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V   D             +      +           + + +        
Sbjct: 693 EGDKVVGASVVTDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLL 752

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                ++  I  +++ G   RTS  +   + RS +G++   +   ++   +V    V  
Sbjct: 753 TVKGDEDLMI--ITDTGVMIRTSVGNISQTGRSTQGVKVMRL---DQDAKIVTFTTVQP 806



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   +Q +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRNSQTD---AEAQAELMAKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    +V       D      +  +  +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    + E + ++    E +  DE
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTI-INVEQDRSDE 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
 gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405]
          Length = 818

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/841 (41%), Positives = 522/841 (62%), Gaps = 35/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  + EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQTEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   R+  IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 SKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D    +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDR--SDEAYLFFTTRKGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNTDVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V   D             +      +           + + +        
Sbjct: 693 EGDKVVGASVVTDQDEVLIITEKGYGKRTMAGEYPTKGRAGKGIKTANITEKNGPLAGLL 752

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++  ++ +++ G   RTS  +   + RS +G++   +   ++   +V    V  +
Sbjct: 753 TVKGDED--LMIITDTGVMIRTSVGNISQTGRSTQGVKVMRL---DQDAKIVTFTTVQPD 807

Query: 851 D 851
           D
Sbjct: 808 D 808



 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRNSRTD---AEAQAELMAKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    +V       D      +  +  +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDDLVALIADLADILSKPERVATIIKEELEEVKRKFGDARRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    + E + ++    E +  DE
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTI-INVEQDRSDE 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
 gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429]
          Length = 806

 Score =  784 bits (2025), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/892 (36%), Positives = 516/892 (57%), Gaps = 93/892 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +  I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV  NK + K AR
Sbjct: 3   INRPIEEELKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEVMGKYHPHG+AAIYD L R+AQDWS+R  L+EGQGNFGSVD DPPAA RYTE RL 
Sbjct: 63  IVGEVMGKYHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLS 122

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  LL+D+ K+T++   N+DGS +EP+VL +++PN+L NG  GIAVGM TNIP HN+ 
Sbjct: 123 KISEELLEDIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNIS 182

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+VDG +A+I NP I ++ L+E I GPDFPTG  I+GR GI+  Y TG+GS  IRG  H+
Sbjct: 183 ELVDGFLALIKNPQISIEELIEFIPGPDFPTGGEIIGRAGIREMYTTGKGSFTIRGKLHV 242

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+    +++IV+TEIPY V+KA +++KI E   E   + I D+RDESD++G R+VIE+  
Sbjct: 243 EEDKK-KKKIVITEIPYNVSKADLIKKIVEYA-ENSSLQIKDIRDESDKEGLRIVIEIPN 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKY 375
             + D+I+N LY++T LQS F   ++ ++  K P    L  ++ AFV  R EVV +R ++
Sbjct: 301 NVNEDIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              +   +AH+L GL  A  ++D ++ +IR S +  +A +ELM+                
Sbjct: 361 FYKQYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELME---------------- 404

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q +AI++LRL RLT L    +  + N L  ++K   +++    
Sbjct: 405 ----------MFDFTETQAKAIVDLRLGRLTKLEISKLIEDYNELVKKMKIEKELIGKDE 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVP 552
           ++   I +EL  +K +    R++ I++         + + I  +++V++++  GY+K + 
Sbjct: 455 KVYEKIIEELTYIKAQYGDSRKSEILDHEEREIKFNELELIPDKEVVISLTKKGYLKMMS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           LS +R Q+RGGKG +G  + ++D + ++     H   LFF+S G VY    +++   S  
Sbjct: 515 LSTFRTQKRGGKGVTGSSLMNDDAIMEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRT 574

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++GK +   +++++ E+I T++             + F TK G V+R  L DF  IN  G
Sbjct: 575 SKGKHISKYINIDKDEKILTMLSVDNFVGE-----LFFVTKFGKVKRTSLKDFENINARG 629

Query: 673 KIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+  D  D ++SV +   ++  IL+ TK G  +RFPIS +R   GR+++GV GI L+K
Sbjct: 630 LRAINFDGNDSLVSVQKIENEKQTILIATKNGMSIRFPISEVRTM-GRSAMGVTGIKLSK 688

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+S A++ + +                                              
Sbjct: 689 DDKVVSSALLSNDE---------------------------------------------- 702

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                  +ILTV+  G+GK T +  +RI  R+G GI+    S +++ G +V+V  V  N+
Sbjct: 703 ------NYILTVTSLGYGKLTETSQYRIQKRAGLGIKNI--SDVSKTGYVVSVSYVLGNE 754

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            I++ +  G  I++ ++ +R   R TKGV + + ++ +++  +  I   E V
Sbjct: 755 DIMIFTKHGMSIKINISGLRALGRVTKGVKLLNLSEGDKIADIAIISGEEDV 806


>gi|240142252|ref|YP_002966762.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
 gi|240012196|gb|ACS43421.1| DNA gyrase subunit A [Methylobacterium extorquens AM1]
          Length = 894

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 368/905 (40%), Positives = 552/905 (60%), Gaps = 28/905 (3%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +   +E    +   S T+EM++SYL+Y ++ +  RA+PD+RDG+KPVHRRI+F M + 
Sbjct: 6   TEVDHADEGVAAVKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAES 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
               ++K+VK A++ G+VMG+YHPHG+ AIYDA+ RM Q WSLR  LI+ QGNFGS+D D
Sbjct: 66  NFTADRKHVKSAKVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDND 125

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL++ A  L+ DLG+  VDFRPNYD S +EPVVL AR+PN+LVNGG GIA
Sbjct: 126 PPAAMRYTESRLERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIA 185

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H+LGE ++ C+  + NP + LD +M ++ GPD PTG VI GR+GI+ A+AT
Sbjct: 186 VGMATNIPPHHLGETIEACLLRLANPAVTLDEIMRVMPGPDLPTGGVIHGRSGIRQAFAT 245

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRG+I + GV+ +E+    R +IV+ ++PY V KA  +EK+AELV EK+I  I+D+RDE 
Sbjct: 246 GRGAIRVSGVASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDES 305

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAF 361
           SD+ G R+VI++++ A   V+LN+L   T   +  +VNM  L+   +P    ++ +L  F
Sbjct: 306 SDKAGIRIVIDVRKDADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEF 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V FR EVV RRT + L K R+  H  +GL  A   +DE+V +IR S + + AR  L+   
Sbjct: 366 VDFRREVVRRRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALD 425

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           ++ S   +   L+ +    +    T  LS+ Q RAILE+RL+RLTGL RD I      L 
Sbjct: 426 FDTSG--EFAQLLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELS 483

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540
           +EI   L+IL+ ++ L G++++EL  +K      RRT I +     + DED +  +D+VV
Sbjct: 484 VEIGGHLEILNVKAVLDGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVV 543

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GYVKR  L  Y  +++            ED V    + +T T +LFF++ G  + 
Sbjct: 544 TVTAGGYVKRTDLPAYMGRQKA------ADEAVEDPVATTIVCTTKTPLLFFTNRGLAHA 597

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           E   +LP  +P  RG+AL+N L L   E +  I+  P+D ++   L ++F T  G +RRN
Sbjct: 598 EVAHKLPEAAPNVRGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRN 657

Query: 661 KLSDFIQINRSGKIAMKLDSRD-----EILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             SDF ++N+ GK+A+KL+  +     +++SV   + E+D+ L ++ G C RF ++ +RV
Sbjct: 658 DASDFARVNKGGKVAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRV 717

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R+SVGV GISL + D+VIS++++ H +A   ER  Y+          +G +      
Sbjct: 718 MKSRDSVGVAGISLGRKDKVISVSVLRHFEATGTEREAYL----------AGGSARTKDE 767

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                    +  +R   ++  EQ IL+V+E GF KRTSS+ +RI+ R G+G+ A  ++  
Sbjct: 768 TTGEPATFELPSDRMLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKLADR 827

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              G LVA+ PV + D +++ +D G   R    E+ I +R T+G   F+    + +VSV 
Sbjct: 828 --TGDLVALMPVEEQDVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSVV 885

Query: 896 RIRES 900
           +I   
Sbjct: 886 KIAAE 890



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 20/258 (7%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G VRR             + A++  + D +   +    ++ ++  T  G   R   + +
Sbjct: 500 DGVVRRELEEIKAAFPDGRRTAIEDSALDALSDEDLVELKDIVVTVTAGGYVKR---TDL 556

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
             + GR       +     +  ++  IV                 +     +      + 
Sbjct: 557 PAYMGRQKAADEAV-----EDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPNVR 611

Query: 774 SLKNDSSVEGNISEERCQELKLKEQ-------FILTVSEKGFGKRTSSYDFRISNRSGKG 826
                + +E    E     + L +         ++ V++ G  +R  + DF   N+ GK 
Sbjct: 612 GRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGK- 670

Query: 827 IRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIF 883
             A  +   N    G LV+V  V+  D + L S  G   R  V ++R+  SR + GV   
Sbjct: 671 -VAIKLEDENGEPQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSVGVAGI 729

Query: 884 STAKDERVVSVERIRESE 901
           S  + ++V+SV  +R  E
Sbjct: 730 SLGRKDKVISVSVLRHFE 747


>gi|296122514|ref|YP_003630292.1| DNA gyrase, subunit alpha [Planctomyces limnophilus DSM 3776]
 gi|296014854|gb|ADG68093.1| DNA gyrase, A subunit [Planctomyces limnophilus DSM 3776]
          Length = 938

 Score =  784 bits (2024), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/911 (37%), Positives = 505/911 (55%), Gaps = 20/911 (2%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             +   I  V+I  EM+ SY+TYA++VI+ RA+PD RDGLKP  RRIL  M  + +  N 
Sbjct: 7   TPQPDRILPVAIEGEMRTSYVTYAMSVIISRALPDARDGLKPSQRRILVAMNDLNLGPNS 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
             VKCA+I G+  G YHPHG+ +IY  L R+AQ+W++R  LI+ QGNFGS+ G PPAA R
Sbjct: 67  GRVKCAKICGDTSGNYHPHGDGSIYPTLVRLAQNWNMRETLIDKQGNFGSLAGLPPAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  +LDDL +DTVD+   YD   +EPVVL +R+PN+LVNG  GIAVGMAT+
Sbjct: 127 YTEARLSAVASEMLDDLKRDTVDYVLTYDQRNREPVVLPSRFPNLLVNGSSGIAVGMATS 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV    + ++++P+  +D LME++ GPDFPTG +I GR GI+  Y TGR ++ 
Sbjct: 187 IPPHNLAEVSQAVIRLLEDPETSIDELMEVLPGPDFPTGGIICGRYGIRQGYLTGRSTLT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR---- 305
           +R  +       + + I VTEIPY   +  + EK+ +LVR+ +I  I+ + D +DR    
Sbjct: 247 LRAKTRFLTEK-NTDIIEVTEIPYLETRDRIREKLEQLVRDDKIKGISRIVDLTDRTTPA 305

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               + I LKR A  +VILNQL++Y+ LQS FSV ++AL+G +P+   +  ++  F+  R
Sbjct: 306 WQVCLHIVLKRDADKEVILNQLFQYSPLQSTFSVILLALSGNRPKTMNIKELIGEFIRHR 365

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             V+ R+T++ L +AR R H + GL IA  N+DEV++ IR S +   A+  L      ++
Sbjct: 366 ITVIRRKTEFQLAEARKRKHTIEGLLIAQLNIDEVIQTIRSSGSRAEAKERLQAILVPSA 425

Query: 426 DIKDLIDLID--DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
            +   +      +     G   T  LS  QT AI+ ++L  L  L ++ +R E   L  +
Sbjct: 426 MVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQEKLRGEHQRLIED 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTV 542
           I   L +LS  + +  +I++E+  + D+    RRT I E    D++ ED I  E MVVT+
Sbjct: 486 IFGYLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKEDLIPEEMMVVTL 545

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KR+P+  Y+AQ RGG+G  G    DED + DLFI STH  +LFF+  G V+ +K
Sbjct: 546 SQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTHDWLLFFTDKGRVFWQK 605

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ LP+ S  ++G+AL+N+LSL +GE++ T +     E    N Y+V AT+ G V++  L
Sbjct: 606 VYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFE---ENRYLVMATRAGIVKKTSL 662

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             + +  + G IA+ L   D ++     + + DILL+T  G  +RF  +  R   GRN+ 
Sbjct: 663 DAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFSQADARAM-GRNTS 721

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI L K D+VI M +   A              +    + S    E      D  V 
Sbjct: 722 GVRGIKLRKDDEVIGMVVADPAMTLLTMCEKGYGKRTPFGFIESAPVVEDVIPGEDGVVA 781

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                E   E    E+      ++      S        R G G+R   V   N  G +V
Sbjct: 782 DEEIAEALPEETDTEEAAGEEGDESSSSSRSYR---RQRRGGLGVRDIRVIPRN--GKVV 836

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-- 900
            +  V + D +++V+  G + RV   EI    R T+GV +    + +RV S+ RI     
Sbjct: 837 KILAVQEGDHVLIVTAGGKIQRVRAAEISEIGRNTQGVRVIKLTEGDRVASMARIPADLC 896

Query: 901 -EIVDEAESTE 910
            E ++E    E
Sbjct: 897 QETIEEKLDIE 907



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 75/544 (13%), Positives = 160/544 (29%), Gaps = 51/544 (9%)

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL--------- 327
           K  +   +       R +  A   +    QG R    L    +  ++  QL         
Sbjct: 414 KERLQAILVPSAMVARALGDAGFMEFQSEQGVRETYSLSANQTEAIVSMQLGSLANLEQE 473

Query: 328 ----YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
                    ++ +F    +  +           + K    +        ++  L+     
Sbjct: 474 KLRGEHQRLIEDIFGYLHLLSDEAHIRAVIREEMQKLGDKYGNARRTEISEDELSDVDKE 533

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             +   + +   +    ++ +         R         A D   + DL   S++    
Sbjct: 534 DLIPEEMMVVTLSQRGYIKRLPIHTYQAQNRGGRGIMGAKADDEDAIQDLFISSTH---- 589

Query: 444 DGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           D  ++ ++      + + +L L   T  GR  +       G ++  C++  +       +
Sbjct: 590 DWLLFFTDKGRVFWQKVYDLPLQSRTSKGRALVNLLSLQEGEQVATCVNTRTFEENRYLV 649

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDED--------CIVREDMVVTVSHLGYVKRVP 552
           +      VK       +     G++ +  +D         +  ++ ++  +  G   R  
Sbjct: 650 MATRAGIVKKTSLDAYKRPTKGGIIAINLKDGDALIEARILSAQEDILLSTANGMAIRFS 709

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            +  RA  R   G  G+ +R +D V  + +     ++L     G+  +     +      
Sbjct: 710 QADARAMGRNTSGVRGIKLRKDDEVIGMVVADPAMTLLTMCEKGYGKRTPFGFIESAPVV 769

Query: 613 ARGKALINIL--------SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                  + +        +L +            DESS ++       + G   R+    
Sbjct: 770 EDVIPGEDGVVADEEIAEALPEETDTEEAAGEEGDESSSSSRSYRRQRRGGLGVRDIRVI 829

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                    +A+               + + +L+ T  G+  R   + I    GRN+ GV
Sbjct: 830 PRNGKVVKILAV--------------QEGDHVLIVTAGGKIQRVRAAEISEI-GRNTQGV 874

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           R I L +GD+V SMA +                  AQ   I  D             +  
Sbjct: 875 RVIKLTEGDRVASMARIPADLCQETIEEKLDIEPKAQVEDIPADQANPPETSTLGDEQTT 934

Query: 785 ISEE 788
            S E
Sbjct: 935 DSGE 938


>gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 867

 Score =  783 bits (2023), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/927 (37%), Positives = 514/927 (55%), Gaps = 103/927 (11%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++  ++      + + I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDEQMTDVRHISDTERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   +  + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPSSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    + +P+   + L+E    II GPDFPTGA ILGR
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATILGR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V  +E+    R+ +VVTE+PYQVN   + +KIA+LVR+  I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVSVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGAIG 299

Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE S R G R+VI LKR A A V+LN LY+ TSLQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTSLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRT++ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWITHQIDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R               LIDL+D  +             VQ  AIL L+L RL  L R  I
Sbjct: 420 RVG-------------LIDLLDVDA-------------VQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL++  R   II  EL  + D+    RRTRI+    +M  ED I
Sbjct: 454 MDEHAELKARVDDLNDILATPERQRAIISAELSEIVDKFGDERRTRILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +RD+D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRDDDVVEHFFVTTTHHWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    E I  ++     E   +  Y+V ATK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDEHIAQVLAIRTYE---DADYLVLATK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V++  LS +      G IA+ L        DE++S +    + D++L ++ GQ VRF
Sbjct: 631 RGLVKKTPLSLYNSPRSGGIIAINLREDEDGKADELVSAQIIMADEDLILVSRDGQAVRF 690

Query: 709 PISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             +   +R   GR++ GVRG+     D+++SM +                          
Sbjct: 691 TATDEQLRSM-GRSTSGVRGMKFRGDDELLSMEVPHEGTD-------------------- 729

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            +L V+E G+ KRT   ++   +R   G
Sbjct: 730 ---------------------------------LLIVTESGYAKRTPVEEYPTKSRGTLG 756

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           +R   +  ++E G LV    V  ++ ++++++ G L++V  +++R  +R T GV+     
Sbjct: 757 VRVGKL--VDERGGLVGALVVRPDEDVMVITESGKLVQVNASDVRPTARNTMGVIFARPD 814

Query: 887 KDERVVSVERIRE---SEIVDEAESTE 910
             +R++++ R  +    E  D+A + E
Sbjct: 815 DGDRIIAITRNSDSAGEEDEDDASAAE 841



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 84/258 (32%), Gaps = 14/258 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTS 588
                D +V  +  G VK+ PLS+Y + R GG     +   ++    +L           
Sbjct: 618 TYEDADYLVLATKRGLVKKTPLSLYNSPRSGGIIAINLREDEDGKADELVSAQIIMADED 677

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  S  G   +       +     R  + +  +     +           E       +
Sbjct: 678 LILVSRDGQAVRFTATDEQL-RSMGRSTSGVRGMKFRGDDE------LLSMEVPHEGTDL 730

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQC 705
           +  T+ G  +R  + ++   +R           DE    +       + D+++ T+ G+ 
Sbjct: 731 LIVTESGYAKRTPVEEYPTKSRGTLGVRVGKLVDERGGLVGALVVRPDEDVMVITESGKL 790

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           V+   S +R    RN++GV       GD++I++     +  + DE               
Sbjct: 791 VQVNASDVRP-TARNTMGVIFARPDDGDRIIAITRNSDSAGEEDEDDASAAEPPEAVGAP 849

Query: 766 SGDTEEITSLKNDSSVEG 783
            G+     +       E 
Sbjct: 850 GGEETSGAASDGAEDSEE 867


>gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
 gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563]
          Length = 834

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/893 (37%), Positives = 500/893 (55%), Gaps = 88/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K +  +SI +E++ SYLTYA++VI+ RA+PD+RDGLKPVHRRIL+ M    +  +K Y K
Sbjct: 25  KRVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKK 84

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   GEV+ +YHPHG+AA+Y  + RMAQD+S+R LL++GQGNFGS+D DPPAA RYTE 
Sbjct: 85  SAATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEA 144

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ + A  +L+D+ K+TV F PN+D S  EP VL A  P +LVNG  GIA+GMATN+PTH
Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTH 204

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  V  ID+ D ++  LM  I+GPDFPT  +I G+ GIK AY TG+G I +R  
Sbjct: 205 NLREVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIYGKEGIKEAYTTGKGRIKLRAR 264

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVI 312
             IE+T  DRE IVV E+PY V K  + EKIAELV++ +I  +AD+RDES  + G R++I
Sbjct: 265 LEIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLII 324

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+G +  ++LNQL+++T L++ F +  +AL   +P+   L  ++K FV  R EV+ +R
Sbjct: 325 ELKKGVATQIVLNQLFKHTDLETTFGIINLALVNGEPKVLNLKELIKYFVDHRVEVITKR 384

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LN+A+ +AH+L GL IA AN++EV+RIIR S N + AR  LM R            
Sbjct: 385 TEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNR------------ 432

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q +AIL++ L RLT L +  I  EL  L   I  C D+L+
Sbjct: 433 --------------FKLSEKQAQAILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLA 478

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
              ++L +IK EL  + ++    RR+ I       ++++ED I  ED+ V+++  G++KR
Sbjct: 479 HPEKILAVIKDELKKIAEKYGDDRRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKR 538

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           VP S YR Q RGG G  G   + E ++  LF+ ST   +  F+  G  +  KV  +P  +
Sbjct: 539 VPASSYRTQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALT 598

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ++GK++  IL+L   E+IT+     E +   +   ++  TK G +++ +L       +
Sbjct: 599 KISQGKSIKFILNLAPEEKITSYFTVSEFDPKQS---IIMVTKMGTIKKMELKHLENAKK 655

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G +A+ L++ DE+++V      +D ++TT  G  +R     IR   GR + GV+GI+L 
Sbjct: 656 RGILALTLENNDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKM-GRAAAGVKGIALD 714

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D  +S   +   ++                                            
Sbjct: 715 DDDICVSGNAIHKGES-------------------------------------------- 730

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ ++E G GKR SS  F +  R GKG         N+ G +V+V  V D 
Sbjct: 731 ---------LIVITENGIGKRLSSKQFNVKGRGGKGQIYIK--PDNKTGKVVSVKTVGDK 779

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+I++V+     I++  + I    R  KGV I + +   RV  +  +      
Sbjct: 780 DEIMVVTTDDMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVVPCDNEE 832


>gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336]
          Length = 863

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
 gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2]
          Length = 919

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/902 (38%), Positives = 532/902 (58%), Gaps = 84/902 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E+ GI  + I+ EM+ S+L YA++VI+ RA+PD RDGLKPVHRRIL+ M ++G+    
Sbjct: 69  ETEQDGIIPMQISKEMKVSFLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGT 128

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  LI+  GNFGS+DGD  AA R
Sbjct: 129 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMR 188

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD + +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 189 YTEARMSKVAALMLEGIKKDTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATS 248

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A+  NP+I +  +ME + GPDFPTGA+I+G  GIK AY TG+GSI 
Sbjct: 249 IPPHNLAETIDATIALAKNPEISISEIMEFLPGPDFPTGAMIMGTKGIKEAYETGKGSIS 308

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R ++ IE     + +I+V+EIPY++ K  ++EKIA+L+++K I  IADLRDES+R G R
Sbjct: 309 VRSIAKIEHLQNGKSRIIVSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIR 368

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I++K+G   ++ILN+LYR T LQS ++VN VAL   +P+   +   L+ ++  +E VV
Sbjct: 369 IIIDIKKGEVPEIILNKLYRQTPLQSNYNVNFVALVDGEPKLLNIKYALEVYLKHQENVV 428

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ LNKA+DR H+L GL IAV N+DEV++II+ S   + A+  L  R         
Sbjct: 429 TRRLRFDLNKAKDRMHILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTR--------- 479

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE QT+AI+++RL RLTGL  D +  E+ +L  EI+   +
Sbjct: 480 -----------------FDLSEKQTKAIVDMRLGRLTGLAVDSMIEEMQNLAAEIERITN 522

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYV 548
           IL++R  L+ +I  EL  +K++    RRT I + +   + DED I + D+V+T S  GYV
Sbjct: 523 ILANRDLLIELIIDELTEIKNKYADERRTVIDKNISASINDEDLISKRDIVITTSTKGYV 582

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G + +   ++D ++ +   +THT +L F++ G VY+ +   +P 
Sbjct: 583 KRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRAHEIPE 642

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            + Q++G + INI+   + +    ++     +   ++ Y+  ATK G +++  LS+F  I
Sbjct: 643 LNRQSKGTSFINIIPRLKVDEGEKVISMLAVDEYSDDKYLFTATKLGIIKKTSLSEFQII 702

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++       +  ILL     + V+F  +  R  + R + GV+GI+
Sbjct: 703 NINGKRAFNLKEEDELIRASIIDDDELILLANSKQRIVKFHSNEFRALS-RIATGVKGIT 761

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+ +  IS +     +                                           
Sbjct: 762 LAEDETCISASSSSEGE------------------------------------------- 778

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ILT+ + GFGK T    FR+ +R GKG+   +    ++ G LV    VN
Sbjct: 779 ----------LILTIGKNGFGKITHHSLFRLVHRGGKGVIGIN---SDKAGNLVFARFVN 825

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +D+I++++  G  IR+P+ +I    RATKGV + +  K E++ +VE ++        E+
Sbjct: 826 PHDEILMITTSGLTIRIPIKDINETGRATKGVKLINLKKKEQIQAVEIVKLESDSTLDET 885

Query: 909 TE 910
            E
Sbjct: 886 IE 887



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 123/362 (33%), Gaps = 22/362 (6%)

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  +  ID   Y     G + ++ ++T    ++     T    D +    +     I+ 
Sbjct: 578 TKGYVKRIDLEEYKTQRRGGVGITTMKTYNDDDISSIITTTTHTDLLIFTNHGRVYRIRA 637

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
                 +R          +  +K +          E ++ M   D    +  + T + LG
Sbjct: 638 HEIPELNRQSKGTSFINIIPRLKVD--------EGEKVISMLAVDEYSDDKYLFTATKLG 689

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +K+  LS ++     GK    +   DE     L   S               +   +  
Sbjct: 690 IIKKTSLSEFQIININGKRAFNLKEEDE-----LIRASIIDDDELILLANSKQRIVKFHS 744

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 +R    +  ++L + E            SS     ++   K+G  +    S F 
Sbjct: 745 NEFRALSRIATGVKGITLAEDE------TCISASSSSEGELILTIGKNGFGKITHHSLFR 798

Query: 667 QINRSGKIAMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            ++R GK  + ++S     ++        ++IL+ T  G  +R PI  I    GR + GV
Sbjct: 799 LVHRGGKGVIGINSDKAGNLVFARFVNPHDEILMITTSGLTIRIPIKDINE-TGRATKGV 857

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L K +Q+ ++ IV        +     +      +  + +        N+ ++E +
Sbjct: 858 KLINLKKKEQIQAVEIVKLESDSTLDETIEDEKFIDDIKNQTKEILLDKGDINEETIEID 917

Query: 785 IS 786
           I 
Sbjct: 918 ID 919


>gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2]
 gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2]
          Length = 862

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 370/918 (40%), Positives = 521/918 (56%), Gaps = 82/918 (8%)

Query: 1   MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M+     S E        + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M Q GV  N  + K + I GE MG YHPHG++AIYD LARMAQD+S+R  L++GQGNF
Sbjct: 61  YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGDPPAA RYTE R+   A  LLDD+ KDTVDF+ NYD   QEP VL + +PN+LVN
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGM+TNIP HNLGEVVD  V +I+NPD  +  LME I+GPDFPTGA I+GR  +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDATVELIENPDATVADLMEHIKGPDFPTGANIVGRNAV 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRG + +R    + +  G   +IV+ E+PYQ NKA ++E+IA+ V E +I  I 
Sbjct: 241 HKAYKTGRGRVRVRADYDVFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIR 297

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDESDR G RVVIELKRG  A+V+ NQL     L+S F V  +AL   +P+  TL   
Sbjct: 298 DIRDESDRDGIRVVIELKRGVMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKET 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R +VV RR++Y L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L
Sbjct: 357 LEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAAL 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     + L               T   SE Q   I+ ++L  LT +   +I  E 
Sbjct: 417 RGEVEVEVGGEPL--------------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEY 462

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I+    IL  +S L  +I+ ELL +KDE    RRT  V    ++   D I  ED
Sbjct: 463 EDVQATIERLETILGDQSELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEED 522

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VV VS   Y+KR+P+S +R Q RGGKG  G  +++ D V+ +F+ +TH  +L F++ G 
Sbjct: 523 VVVVVSEDDYIKRMPVSRFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQ 582

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K +++P  S  ARGK+ +N+L  + GE IT ++   + E      Y+   T++G +
Sbjct: 583 VYQLKAYQVPEMSRTARGKSAVNLLDFDDGEEITAVVNCDDLEDI--EGYLTMVTRNGYI 640

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     F  I  +G IA KLD  DE++ VE    E+D+++ T+ G  +RF    +R   
Sbjct: 641 KRTGTDRFQNILSTGIIATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAM- 699

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRGI L   D V  +A +                                    
Sbjct: 700 GRSARGVRGIKLEGDDVVAGVAAIDE---------------------------------- 725

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                +ILTV+E G+GKRT    +R  +R+GKG+     ++ N 
Sbjct: 726 -----------------DHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERN- 767

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G + A+  V + D ++++SD+G ++R PV +I    R T GV++    + + V SV+ I
Sbjct: 768 -GPVCAINTVGEGDHLVVMSDEGQILRTPVEDISTVGRNTMGVIVMDLDEGDDVASVDVI 826

Query: 898 R-----ESEIVDEAESTE 910
                 E E +D+A+S E
Sbjct: 827 PAAMTTEGEELDDADSVE 844



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 97/250 (38%), Gaps = 13/250 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    E  +  V+  GY+KR     ++     G       + + D + D+ +    + ++
Sbjct: 623 DLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTG--IIATKLDEGDELVDVEVTGGESDLV 680

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      ARG   +  + L   + +  +    ED  SW    ++ 
Sbjct: 681 IGTERGMSIRFDEDEVRAMGRSARG---VRGIKLEGDDVVAGVAAIDEDHHSW----ILT 733

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVR 707
            T++G  +R  L  +   +R+GK  + + + +    V       + + +++ +  GQ +R
Sbjct: 734 VTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPVCAINTVGEGDHLVVMSDEGQILR 793

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  I    GRN++GV  + L +GD V S+ ++  A     E +     +       + 
Sbjct: 794 TPVEDISTV-GRNTMGVIVMDLDEGDDVASVDVIPAAMTTEGEELDDADSVEEDAETDAK 852

Query: 768 DTEEITSLKN 777
              +  +   
Sbjct: 853 ADAKADADDE 862


>gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630]
 gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255]
 gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 808

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR   GR ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D V+SM +                  +      S             ++         
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N  
Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806

Query: 851 DQ 852
           ++
Sbjct: 807 EE 808


>gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
 gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali]
          Length = 838

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/915 (37%), Positives = 549/915 (60%), Gaps = 88/915 (9%)

Query: 1   MTE--HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   ++ +++     I  ++I  E++ S+L+YA++VI+ RA+PD++DGLKPV RRIL+
Sbjct: 1   MSKKNDLLKNEDSLVGKIKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM ++GV  +  Y K ARI G+VMGK+HPHG+++IY+A+ RMAQD++ R  L++G GN G
Sbjct: 61  GMNELGVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA RYTE ++ K +  LL ++ ++TVDF  NYDGS +EPV L + +PN+LVNG
Sbjct: 121 SIDGDNAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP+HNL EV+D  +  IDN +ID + LM+ I+GPDFPTG  ILG +G+K
Sbjct: 181 STGIAVGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEILGISGLK 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRG I +R  + I  +  ++  I++ EIPYQ+ K +++EKIA LV+EK I  I D
Sbjct: 241 EAYETGRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITD 300

Query: 299 LRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           LRDES+  +G R++IEL++     +ILN LY++T LQ+ F  NM+AL    P+  +L  +
Sbjct: 301 LRDESNNSRGMRIIIELRKDVEPKIILNNLYKHTQLQTSFCFNMIALVNGVPKIVSLKNM 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F  FR +V+ R+ K+ LNKA+ + H++  LAI + ++++V++II+ S + + A++ +
Sbjct: 361 LEEFFLFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNI 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M                                E+Q++AILE+ L ++T L    +  E 
Sbjct: 421 M--------------------------INYNFDEIQSKAILEMSLQKITNLEIKKVIKEE 454

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVRE 536
             L ++I EC +I++S+++   I+K+ELL +K++    R++ I     L +E+E  I +E
Sbjct: 455 EILKLKIYECENIINSQTKKEKILKKELLKIKNQFQDKRKSIISNEQYLTVENESLINKE 514

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            +++TV++ GY+KR+ L  Y+ Q RGGKG SG+ M++ DF+  + I STH   LFF++ G
Sbjct: 515 TILITVTNKGYIKRLNLDTYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKG 574

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +Y+ K + +P+GS  ++G  L+N+L L + E +T++    + +      Y+V  TK G 
Sbjct: 575 KIYQLKGYEIPLGSRYSKGIPLVNLLPLEKNEFLTSLTSVKDFK--EEKNYLVLVTKKGL 632

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++RN L DF  + R+GKIA  L + DE+L V   T + DI+L    G+ +RF    IR  
Sbjct: 633 IKRNSLKDFENVRRNGKIAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQ- 691

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR S GVRGI +   +++I M +V                                   
Sbjct: 692 TGRKSSGVRGIKIKTEEEIIGMTVVDS--------------------------------- 718

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                              ++Q IL ++EKG+GK T + ++R   R GKG +   ++  N
Sbjct: 719 -------------------EKQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKITSRN 759

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVE 895
             G LV +  +  N+++I+ SD G ++R+   +I +  S+ T+G ++ S  + ++V SV 
Sbjct: 760 --GKLVRLLTIYRNEELIIFSDHGKVVRIDTKQIPLTKSKVTQGNILISLEESDKVSSVA 817

Query: 896 RIRESEIVDEAESTE 910
            I+++ I  E  + E
Sbjct: 818 LIKKTLIKKEESNDE 832


>gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932]
 gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55]
 gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34]
 gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196]
 gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196]
          Length = 808

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR   GR ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D V+SM +                  +      S             ++         
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N  
Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806

Query: 851 DQ 852
           ++
Sbjct: 807 EE 808


>gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
 gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma
           AYWB]
          Length = 835

 Score =  783 bits (2022), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/911 (37%), Positives = 543/911 (59%), Gaps = 90/911 (9%)

Query: 1   MTEHIISSDEEE------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++H   ++E           I  V++++EM+ S+L+YA++VI+ RA+PD++DGLKPV R
Sbjct: 1   MSDHKTQNNEANIHKPHDHGKIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++GV  +  Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++G 
Sbjct: 61  RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K A  L+ ++ K+T+DF  NYDG+ +EP+VL    PN+
Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IPTHNLGEV+DG +  I+N DI +D LM+ I+GPDFPTG  +LG 
Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +K+AY TG+G+++++  SH+ +    +  I+VTEIPYQV K  ++EKIA LV+ K + 
Sbjct: 241 QSLKSAYHTGQGAVILKAKSHVLEER-GKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDES R+G ++VIELKR A+A +ILN+LY+++ L+  F +NMVAL G  P+  +L
Sbjct: 300 GITDLRDESSRKGMKIVIELKRDANAKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+AF  FR EV+ R+  + L KA  R H++  L   + +++  +++I+ S + + A+
Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQ 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           R+LMQ+                              E+Q++AILE+ L RL+      + 
Sbjct: 420 RKLMQK--------------------------YNFDEIQSKAILEMSLQRLSNQETQKLI 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCI 533
            E  +L  EI EC  I+ S+ +   I+++ELL +K +    R+T +     L+ EDED I
Sbjct: 454 TEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ++ +++T+++ GY+K + +  Y+ Q+RGG+G SG+ + +EDF+  L I STH   LFF+
Sbjct: 514 EKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + +P+G  Q++G  L+N L   + E +T+       + S +  Y+ FATK
Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSIKNFDQSQD--YLFFATK 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L ++  I++ G IA++L   DE+L+V+  T   +I+L +  G  + F  + I
Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCETKI 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  + RNS+GV G+ L   + ++  A+                                 
Sbjct: 692 KSIS-RNSMGVIGMRLGSDEFLVGAALFD------------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                              +  KEQ IL ++E GFGK T+   +RI  RSGKG +   V+
Sbjct: 720 -------------------VDSKEQNILVMTENGFGKITNVNQYRIQARSGKGSKTIKVN 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892
             ++ G L+ +  V  +D +I+ SDKG ++RV +++I +  ++AT+G  I       + V
Sbjct: 761 --DQKGRLITLQVVLPSDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818

Query: 893 SVERIRESEIV 903
           SV  +++  + 
Sbjct: 819 SVAVVKKEVLD 829


>gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
 gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2]
          Length = 837

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/900 (36%), Positives = 517/900 (57%), Gaps = 75/900 (8%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +   +  +T   I+ E++NS++ YA++VI+ RAIPD+RDG KPVHRR+L+    MG+  +
Sbjct: 12  ESLNKTKVTDKPISKEVENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHD 71

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K AR+ GEV+GKYHPHG+ A Y+ + RMAQD+S+R +L++G GNFGS+DGD  AA 
Sbjct: 72  KPYKKSARLVGEVIGKYHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAM 131

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L ++ K+TVDF  NYDGS  EP VL A +PN+L NG  GIAVGMAT
Sbjct: 132 RYTEARLSKISSEMLKNIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMAT 191

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E++D  + +  N D  ++ + ++++GPDFPT A I+G  GI + + TGRGSI
Sbjct: 192 NIPPHNLSEIIDAVLLLTKNKDASVNEIKQVLKGPDFPTKAEIVGTDGINSYFETGRGSI 251

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + I  +   + QI++ EIPY VNK+ +++KI +LV+ + I  IADLRDES R+G 
Sbjct: 252 TIRSKAEIIHSRDSKSQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K+    +V+LN+L++ T LQS FSVNM+AL   +P+   +  +L+ ++  +  V
Sbjct: 312 RIVIEVKKDTVPEVLLNKLFKMTPLQSNFSVNMLALVDKEPKLLNIKEVLQEYLKHQVNV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VR+TK+ L KA +R H+L GL IAV N+D V++IIR S + + A ++L+ +        
Sbjct: 372 LVRKTKFELKKAEEREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITK-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+++Q +AIL++RL  L+ L R  I  EL  +   I+E  
Sbjct: 424 ------------------YKLTKIQAKAILDMRLRSLSNLERLKIEQELKEVKALIQELS 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            IL S  + + II +EL+++K+     R+T I+      ++DED I  E++V++ S   Y
Sbjct: 466 GILKSSDKQMDIISKELINLKNTYGDERKTEILYGVSASIDDEDLIPVENIVISRSANNY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y+ QRRGG G  GV   ++D V D+   +THT +LFF+  G VY+ +   +P
Sbjct: 526 LKRISIETYKIQRRGGVGVKGVSTYNDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            GS Q++G   +N++++ + E+I  ++P  +     +  ++  AT  G V+R  LS++  
Sbjct: 586 PGSRQSKGVPALNLMNIEKNEKILVMLPVEDY----SKGFLFLATTKGIVKRTSLSEYNS 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +GK A+ L   D++LS      +++I L    G   RF    +RV  GR + GV+GI
Sbjct: 642 IKSNGKRAITLREGDQLLSAFLTRGKDEIYLGASNGLLTRFNEQDVRVM-GRTASGVKGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           ++                                         E+ +   +         
Sbjct: 701 NI-----------------------------------------EVKAEGRNKKKIDTSIN 719

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  L    IL++ EKG GK + + ++R++ R  KG+     +  ++ G L+    V
Sbjct: 720 VVGASSSLSGDLILSIGEKGLGKLSEAENYRLTRRGSKGVVTLKQN--DKTGKLIFSSAV 777

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             +++I++V+  G +IR  +  +R+  R+T GV +      E+++S    ++ E  +E E
Sbjct: 778 KGDEEILIVTSSGKIIRQELKNLRVIGRSTSGVTLVKLQPKEKIISAAVYKKEEDENEIE 837


>gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63]
 gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
 gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP07]
          Length = 808

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FNLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR   GR ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D V+SM +                  +      S             ++         
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N  
Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806

Query: 851 DQ 852
           ++
Sbjct: 807 EE 808


>gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92]
 gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92]
          Length = 873

 Score =  783 bits (2021), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/925 (39%), Positives = 542/925 (58%), Gaps = 135/925 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I++ +++    I  V I D +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENILNLNQD----IKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R   ++GQGNFGS+
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL +R PN+L+NG  
Sbjct: 117 DGDSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P H+L E++DG + ++DN +  L+ +M+ I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIFGKKGIMEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++R
Sbjct: 237 YRTGRGRVKVRAKTHIEK-KPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR+G RVVIELKR A +D++LN L++ T+++S F V M+A++  +P+ FTLI +LK 
Sbjct: 296 DESDREGIRVVIELKRDAMSDIVLNNLFKSTTMESTFGVIMLAIDNKEPKIFTLIELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R+ V++R+T + L KAR RAH+L GL IA+ N+DEV+ +IR S +  +AR  LM++
Sbjct: 356 FLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLMEK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q+ AIL++RL++LTGL R+ + NEL  L
Sbjct: 416 --------------------------FGLSELQSNAILDMRLSKLTGLEREKLDNELKEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI    +IL S + L  +IK ELL +K +   PR T IV+   D++ ED I  E+MVV
Sbjct: 450 LAEISRLDEILKSETLLENLIKDELLEIKSKFKVPRLTEIVDDYDDIDIEDLIPNENMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y 
Sbjct: 510 TITHRGYIKRVPSKQYEKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+++P GS  A+GKA++N++ L   E+I  I+P  +      N  + F TK+G V+R 
Sbjct: 570 LKVYKIPEGSRTAKGKAVVNLVQLQPEEKIKAIIPTTDFA---QNKSLAFFTKNGIVKRT 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------- 695
            LS+F  I   G  A+ LD  DE+++       ++                         
Sbjct: 627 NLSEFKNIRSIGVRAISLDENDELVTALIVEHGDEGVQPENLIDELGVETEINEIETIES 686

Query: 696 --------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734
                               + + TK G C++F +  +R   GR + GV GI   + GD+
Sbjct: 687 EIDEQSDENIDSIDDTDEKMLFIVTKKGMCLKFKLGKVRQM-GRTARGVTGIKFKEKGDE 745

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+  A++                                                     
Sbjct: 746 VVGAAVIESNA------------------------------------------------- 756

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              Q IL++S+KG GKRT++ ++R++NR GKG+    ++     G L+ V  V+D   ++
Sbjct: 757 ---QEILSISQKGIGKRTTAEEYRLTNRGGKGVICMKLTTR--TGELIGVVMVDDEMDLM 811

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG 879
            ++  G +IRV +  IR A R T G
Sbjct: 812 ALTSSGKMIRVDMQSIRKAGRNTSG 836


>gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
 gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112]
          Length = 870

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/909 (38%), Positives = 540/909 (59%), Gaps = 92/909 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E I+   E   + +  + I DE++ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +
Sbjct: 29  EEIMKKTEMSNEEL--IYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDE 86

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  N  Y K AR+ GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS+DG
Sbjct: 87  LKMNHNSPYKKSARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDG 146

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K A  +L D+ KDT+D+R N+D S  EP VL AR PN+L+NG  GI
Sbjct: 147 DSAAAMRYTEARMSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGI 206

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGE+ DG +A+IDN DI +D L+  I+GPDFPTG +I G++GI +AY 
Sbjct: 207 AVGMATNIPPHNLGELSDGIIALIDNRDISIDELITHIKGPDFPTGGIIYGKSGIYSAYK 266

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG + +   + I      R+ IV+TE+PYQVNKA ++++I ELV++K IV I+DL D 
Sbjct: 267 TGRGKVRVSAKTEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADL 326

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+ +G R+VI++K+G  A+++LN+L ++T LQ+ F + M+AL    P+   L  IL+ ++
Sbjct: 327 SNLEGIRIVIDIKKGEEAEIVLNKLLKFTDLQTTFGIIMLALVNNAPKILNLKEILEKYL 386

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V+ R+T + LNKA+DRAH+L GL  A+ ++DE++ IIR S     A+  L+ +  
Sbjct: 387 EHRYDVITRKTIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAK-- 444

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                      +E+QT AIL++RL RLTGL R++I  E + L +
Sbjct: 445 ------------------------FEFTEIQTDAILDMRLHRLTGLAREEIDTEYDKLML 480

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   IIK+E+L +K +    RRT I     ++  ED I  ED++VT+
Sbjct: 481 FITDLEDILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYEINIEDLIKNEDVIVTI 540

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR+ L  Y+AQ+RGGKG S     ++D + DLF   T  +++ FS  G VY  K
Sbjct: 541 TKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIK 600

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P  S QARGK + NI+ L++ E+I+ I+P   DE   +N  ++F T++G  ++ K+
Sbjct: 601 VYEIPEVSKQARGKLIGNIIELDENEKISVIIPV--DEIENDNRDLIFITRNGIAKKTKI 658

Query: 663 SDFIQINRSGKIAMKLDSR-DEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGR 719
           S+F  INR+GKIA+      DE+  V   +   +++I ++TK G  VRF    IR   GR
Sbjct: 659 SEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVRFKEEDIRSM-GR 717

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVR I L   D+V+S  ++                                      
Sbjct: 718 TAAGVRAIKLNSNDEVVSADVI-------------------------------------- 739

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-- 837
                       +  + E  +L+V+  G GK+T   ++ I  R GKG++  ++ + ++  
Sbjct: 740 ----------YTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEE 789

Query: 838 --IGALVAVFPVNDND------QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                +V    ++ +D      +++ +S  GT+IR+ + ++ +  R +KGV I S    E
Sbjct: 790 SEHHYVVYSTIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKE 849

Query: 890 RVVSVERIR 898
            +VS +R+ 
Sbjct: 850 YLVSADRVA 858



 Score =  121 bits (302), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 79/221 (35%), Gaps = 7/221 (3%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ I+  TK G   R  + + +    R   GV   +  + D +  +      D   
Sbjct: 530 LIKNEDVIVTITKRGYAKRMSLDSYKAQK-RGGKGVSNTTTIEDDVLKDLFTAKTLDTLM 588

Query: 747 --DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                 ++  +K             + I ++      E         E++   + ++ ++
Sbjct: 589 VFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIENDNRDLIFIT 648

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  K+T   +F+  NR+GK   A       +    V +   ++ D+I + +  G  +R
Sbjct: 649 RNGIAKKTKISEFKTINRNGK--IAISFKDDEDEVKFVGITSGSEKDEIFISTKGGMAVR 706

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
               +IR   R   GV       ++ VVS + I     VDE
Sbjct: 707 FKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDE 747


>gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
 gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268]
          Length = 914

 Score =  782 bits (2020), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/908 (39%), Positives = 541/908 (59%), Gaps = 52/908 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + S+  E + I  + + + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV
Sbjct: 1   MQSNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGV 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              + Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ +S+R+  ++GQGNFGS+DGD  
Sbjct: 61  GSRQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  LL DL K+TVDF PNYD S  EP VL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E+V G + +++N +  L+ +M  I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIYGKKGIIEAYKTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + IR  +HIEK    ++ IV+ E+PYQ NKA ++E+IA+LV+EK+I  I+++RDESDR
Sbjct: 241 GRVKIRAKTHIEK-KASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDR 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIELKR A ++++LN L++ T++++ F V M+A++G +P+ FTLI +LK F+  R
Sbjct: 300 DGIRVVIELKRDAMSEIVLNNLFKQTTMEATFGVIMLAIDGKEPKIFTLIELLKLFLNHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +IR S +   AR  LM R     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSR----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q+ AIL++RL+RLTGL R+ I  EL  +  EIK
Sbjct: 415 ---------------------FDLSEAQSGAILDMRLSRLTGLEREKIEEELKEILAEIK 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               IL S   + GIIK ELL +KD+   PR T IV+   D++ ED I  E+MVVT++H 
Sbjct: 454 RLDAILKSEELIEGIIKDELLEIKDKFKCPRITEIVDDYEDIDIEDLIANENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKGR  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N++ L   E+I  I+P  + +    +  +VF T++G V+R  LS+F
Sbjct: 574 IPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFD---PSKSLVFFTRNGIVKRTNLSEF 630

Query: 666 IQINRSGKIAMKLDSRDEILSVET----CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             I   G  A+ LD  D +++         +  +       G  +    +   +      
Sbjct: 631 KNIRSLGIRAISLDEDDTLVTALIAPNSAEEMQNYKGGALSGDDLDGGEAEEILEQTE-- 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
              + I     D++           D + +      +    +        +  ++    +
Sbjct: 689 ---QDILEGSEDEISDEISQDEGAQDGEPQSTNENMLFIATKKGMCLKFNLNKIRQMGRI 745

Query: 782 EGNISEERCQELKLK----------EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +   + +E   +           Q IL+VS+KG GKRT++ ++R++NR GKG+    
Sbjct: 746 ARGVKGIKFKEKGDEVIGAAFILSDMQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMK 805

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++  N  G L+ V  V++   ++ ++  G +IRV +  IR A R T GV++ +  + + V
Sbjct: 806 LT--NRTGELIGVVMVDEEMDLMALTTSGKMIRVDMQSIRKAGRNTSGVIVVNV-EGDDV 862

Query: 892 VSVERIRE 899
           VS+    +
Sbjct: 863 VSIATCPK 870



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 78/206 (37%), Gaps = 12/206 (5%)

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               +   +  G   K  + ++      ARG   I         +              +
Sbjct: 718 NENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKF-------KEKGDEVIGAAFILSD 770

Query: 645 NLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTK 701
              ++  ++ G  +R   S++        G I MKL +R  E++ V    +E D++  T 
Sbjct: 771 MQEILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMDLMALTT 830

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ +R  + +IR  AGRN+ GV  +++ +GD V+S+A    A+   +     +      
Sbjct: 831 SGKMIRVDMQSIR-KAGRNTSGVIVVNV-EGDDVVSIATCPKAEEGDEGEADELAQDENL 888

Query: 762 RRLISGDTEEITSLKNDSSVEGNISE 787
                   +  +   +D  ++G   E
Sbjct: 889 LNSNLDSKDSQSDGPSDEILKGGEDE 914


>gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97]
          Length = 862

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 361/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ L+  DE+++     ++ D                              
Sbjct: 631 QNIRSIGVRAINLNENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLENEESA 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP+  +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLVKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL+VS KG 
Sbjct: 747 -------------------------------------------------QEILSVSAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 818

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/839 (41%), Positives = 519/839 (61%), Gaps = 35/839 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD S +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    ++DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVRRDASANVILNNLFKMTQMQTNFGFNMLAIQNGVPKILSLRQILGAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLVALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSLEDEDLIEETDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQAEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D    +  Y+ F T+ G V+R  +++F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGESIQTIINVEQDR--SDEAYLFFTTRQGLVKRTNVAEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  + +R   GR++ GVRG++L 
Sbjct: 634 NGLKALNLRDEDELINVFLTDGNADVIIGTKYGYSVRFNEAVVRNM-GRSATGVRGVNLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+V+  ++V   D             +      +           + + +        
Sbjct: 693 EGDRVVGASVVTDQDEVLIITEKGYGKRTMASEYPTKGRGGKGIKTANITEKNGPLAGLL 752

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                ++  I  +++ G   RT   +   + RS +G++   +   ++   +V    V  
Sbjct: 753 TVKGDEDLMI--ITDTGVMIRTGVANISQTGRSTQGVKVMRL---DQDAKIVTFTTVQP 806



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 96/241 (39%), Gaps = 23/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   +Q +      +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRNSQTD---AEAQAELMAKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    +V       D      +  +  +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDARRTELMVGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
            +D ++  ++KG + R+   EI    R  KG   V +    + E + ++    E +  DE
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEGESIQTI-INVEQDRSDE 608

Query: 906 A 906
           A
Sbjct: 609 A 609


>gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
 gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia
           ATCC 43541]
          Length = 815

 Score =  782 bits (2019), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/838 (42%), Positives = 517/838 (61%), Gaps = 32/838 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  V++  EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M   G+  +K Y 
Sbjct: 7   QGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYK 66

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++++YDA+ RMAQD+S+R +L +G GNFGSVDGD  AA RYTE
Sbjct: 67  KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L D+ K+TVDF  NYDGS +EP VL A++P +LVNG  GIAVGMATNIP 
Sbjct: 127 VRMSKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN+ EV++G + +IDNP+  ++ LM +I+GPDFPT  +ILG   I+ AY TGRG I +R 
Sbjct: 187 HNMVEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGTEEIRKAYTTGRGVIKMRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +HIE  S  + +I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 247 RAHIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVI 306

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL+R ++ +VILNQLY++T LQ  F V M+AL   +P    L  IL  +++ +E V+ RR
Sbjct: 307 ELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQPVIMNLKQILGHYISHQENVITRR 366

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA  RAH+L GL IA+ +LD V+  IR S   + AR  LM              
Sbjct: 367 TQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALM-------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q +AIL+LRL RLTGL R+ I  E   +   I+E   IL+
Sbjct: 413 ------------DGFKLTEKQAQAILDLRLQRLTGLEREKIEEEYQEVLRMIEELKGILA 460

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R ++L IIK EL+ V+D+    RRT I     +M+  D I  ED+VVT++   Y+KR+P
Sbjct: 461 DRMKVLAIIKDELIEVRDKYGDERRTEITFDASEMDITDLIAEEDVVVTLTMSNYIKRIP 520

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR QRRGG G  G+  ++ D V+DL I +TH  +LFF++ G V+  K + +P    Q
Sbjct: 521 LDTYRRQRRGGVGVKGMGTKETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQ 580

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G A+IN+L++   ERIT ++   E +    + ++   TK G V++  L++F  I +SG
Sbjct: 581 AKGTAIINLLAVEADERITAVIQVREFK---PDRFLFLGTKRGVVKKTPLAEFANIRKSG 637

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ LD  DE++ V+    EN I+L T+LG+ + FP S +R   GR + GVRGI LA G
Sbjct: 638 LKAVNLDEEDELIGVKFTDGENRIMLGTRLGKAIAFPESGVRSM-GRVTRGVRGIMLADG 696

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V++M I+                 +A     +        +  +  V           
Sbjct: 697 DEVVAMDILKSDSEVLTVTEGGYGKRTAAGEYRTQTRGGKGLI--NMKVTEKTGPVVGIR 754

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +  ++Q ++ ++ +G   RTS  +    +R+ +G+R   +++ + + ++  +  + D 
Sbjct: 755 VVREDQELMLITTEGIVIRTSVNEISRISRNTQGVRLMTIAENDRVASMATMNRIVDT 812



 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 122/279 (43%), Gaps = 19/279 (6%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKL--DSRDEILSVET-- 689
             +   +  +  ++F T  G V   K  +         G   + L     DE ++     
Sbjct: 545 VSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQV 604

Query: 690 --CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                +  + L TK G   + P++       R S G++ ++L + D++I    V   D +
Sbjct: 605 REFKPDRFLFLGTKRGVVKKTPLAEFANI--RKS-GLKAVNLDEEDELIG---VKFTDGE 658

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
               +      +         +    +      +  +  E    ++   +  +LTV+E G
Sbjct: 659 NRIMLGTRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDILKSDSEVLTVTEGG 718

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT++ ++R   R GKG+    V++  + G +V +  V ++ +++L++ +G +IR  V
Sbjct: 719 YGKRTAAGEYRTQTRGGKGLINMKVTE--KTGPVVGIRVVREDQELMLITTEGIVIRTSV 776

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVE---RIRESEIV 903
           NEI   SR T+GV + + A+++RV S+    RI ++   
Sbjct: 777 NEISRISRNTQGVRLMTIAENDRVASMATMNRIVDTPSE 815



 Score = 94.9 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 9/227 (3%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              E+   +   +E+ ++  T      R P+   R    R  VGV+G+   + D V  + 
Sbjct: 491 DASEMDITDLIAEEDVVVTLTMSNYIKRIPLDTYR-RQRRGGVGVKGMGTKETDIVSDLL 549

Query: 740 IVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           I           +    ++                          +  I+          
Sbjct: 550 ITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERITAVIQVREFKP 609

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++F+   +++G  K+T   +F  +N    G++A ++ +      L+ V   +  ++I+L 
Sbjct: 610 DRFLFLGTKRGVVKKTPLAEF--ANIRKSGLKAVNLDE---EDELIGVKFTDGENRIMLG 664

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  G  I  P + +R   R T+GV     A  + VV+++ ++    V
Sbjct: 665 TRLGKAIAFPESGVRSMGRVTRGVRGIMLADGDEVVAMDILKSDSEV 711


>gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 862

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ I++ E+PYQ NKA ++E+IAELV+E++I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116]
 gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1]
 gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327]
          Length = 863

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFASGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A
 gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni]
 gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 863

 Score =  782 bits (2018), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26]
 gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79]
 gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58]
          Length = 808

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKNEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR   GR ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D V+SM +                  +      S             ++         
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N  
Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806

Query: 851 DQ 852
           ++
Sbjct: 807 EE 808


>gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42]
          Length = 808

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FKLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR   GR ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D V+SM +                  +      S             ++         
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N  
Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806

Query: 851 DQ 852
           ++
Sbjct: 807 EE 808


>gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A,
           chloroplastic/mitochondrial [Vitis vinifera]
          Length = 911

 Score =  781 bits (2017), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/917 (38%), Positives = 523/917 (57%), Gaps = 77/917 (8%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           ++   +  +  I    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G
Sbjct: 55  VLKEKDGRDGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELG 114

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR  LI+G GNFGSVD DP
Sbjct: 115 LSSRKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADP 174

Query: 125 PAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRL+     + L DL +DTVDF PN+D S +EP +L AR P +L+NG  GIA
Sbjct: 175 PAAMRYTECRLEALTEAMLLADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIA 234

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HN+GE+VD    +I NP+  L  L+E + GPDFPTG +I+G  GI  AY T
Sbjct: 235 VGMATNIPPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRT 294

Query: 244 GRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           GRG I++RG + +E   +   R  +++ EIPYQ NK++++EKIAELV  K +  I+D+RD
Sbjct: 295 GRGRIIVRGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRD 354

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G R+VIELKRG+   ++LN+LYR T+LQS FS NM+ +   +P+   L  +L+AF
Sbjct: 355 ESDRSGMRIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAF 414

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR  VV RR ++ L++A++R H++ G+ + + NLD V+R+I+ +P+   A        
Sbjct: 415 LDFRCSVVERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMA-------- 466

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                             + G      LSE Q  AIL++ L R+T L R+    E  SL 
Sbjct: 467 ------------------STGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLM 508

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVV 540
            +I +  ++LSSR ++L +I+QE + +K+   TPRR+         +ED D I  E+M++
Sbjct: 509 EQISKLQELLSSRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLL 568

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            VS  GYVKR+  + +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V+ 
Sbjct: 569 AVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHS 628

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            + +++P  +  A G  L+ IL L+ GERIT+I+P  E      + +++  T +G +++ 
Sbjct: 629 ARAYKIPECTRTAAGTPLVQILCLSDGERITSIIPVSEFA---EDQFLLMLTMNGYIKKV 685

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L+ F  I  +G IA++L   DE+  V  CT ++ + + ++ G  +      IR   GRN
Sbjct: 686 SLNFFSSIRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRAL-GRN 744

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + G   + L +GD++ SM I+  A                                    
Sbjct: 745 TRGSIAMRLKQGDKMASMDIIPAA--------------------------------IRKD 772

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
           +E  + + + +   L   ++L VSE G GKR     FR+S  +  G+     S       
Sbjct: 773 LEKALEDRQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSA---EDH 829

Query: 841 LVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ 
Sbjct: 830 LAAVFVVGFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQ 889

Query: 893 SVERIRESEIVDEAEST 909
           S   +  +E   + E  
Sbjct: 890 SASLMSATETETDDEEA 906



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 67/283 (23%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V+R K + F        GK   KL   D +     C   
Sbjct: 555 LEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAH 614

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     R + G   V+ + L+ G+++ S+  V         
Sbjct: 615 DYVLYFSDRGIVHSARAYKIPECT-RTAAGTPLVQILCLSDGERITSIIPVSE------- 666

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        ++QF+L ++  G+ K
Sbjct: 667 -------------------------------------------FAEDQFLLMLTMNGYIK 683

Query: 811 RTSS---YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + S       R +     GI A  +        L  V    ++D + + S  G +I    
Sbjct: 684 KVSLNFFSSIRST-----GIIAIQLVPG---DELKWVRCCTNDDLVAMASQNGMVILSSC 735

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             IR   R T+G +     + +++ S++ I  +   D  ++ E
Sbjct: 736 EIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALE 778


>gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 862

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
 gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium
           difficile NAP08]
          Length = 808

 Score =  781 bits (2016), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/842 (41%), Positives = 519/842 (61%), Gaps = 35/842 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           EE   I  + I +EM+ SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K 
Sbjct: 2   EENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RY
Sbjct: 62  YRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ K +  LL D+ K+TVDF+PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+I
Sbjct: 122 TEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V +IDNP+  +D L++ ++GPDFPT A+I+G+  I  AY TGRG + +
Sbjct: 182 PPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIMGKESIAEAYRTGRGKVKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+    ++QI+VTEIPYQVNKA ++E+IAELV+EKRI  I+DLRDES+R G R+
Sbjct: 242 RSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR A+A+++LN LY+++ ++  FS+ M+AL   +P    L  IL  ++  +E+VV 
Sbjct: 302 VIELKRDANANIVLNNLYKHSQMEDTFSIIMLALVDGQPRVLNLKQILYHYIKHQEDVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA  RAH+L GL IA+ N+D V+ +IR S   + A+  L+++          
Sbjct: 362 RRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E+Q +AIL++RL RLTGL RD I  E   L  +I    +I
Sbjct: 412 ----------------FNLTEIQAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+    LL +IK E+  +K+     RRT I     +++  D I  E++ +T++H GY+KR
Sbjct: 456 LADERLLLNVIKDEITIIKENYSDERRTEIRHAEGEIDMRDLISDEEIAITLTHFGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P   Y++Q+RGG+G S +  R+EDFV  L   +TH+ +LFF++ G V+K   + +P G 
Sbjct: 516 LPSDTYKSQKRGGRGISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGK 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G A++N+L L+  E+I T++P   ++    N Y++ ATK G V++ K  +F  IN+
Sbjct: 576 RQAKGTAIVNLLQLSADEKIATLIPIDGND---ENEYLLLATKKGIVKKTKREEFKNINK 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ L   DE++ VE    + ++LL TK G  +RF  + IR   GR ++GV+GI+L+
Sbjct: 633 SGLIAIGLRDDDELIGVELTDGKQEVLLVTKEGMSIRFDENDIRYM-GRTAMGVKGITLS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D V+SM +                  +      S             ++         
Sbjct: 692 KEDFVVSMNLCSKGTDVLVVSKNGFGKRTNIEEYRSQI--RAGKGIKTYNISEKTGTIVG 749

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            ++  ++  I+ ++  G   R    +  +  R   G++       N+   +V++  +N  
Sbjct: 750 ADMVNEDDEIMIINSDGVLIRIRVNEISLFGRVTSGVKLMKT---NDEVNVVSIAKINIE 806

Query: 851 DQ 852
           ++
Sbjct: 807 EE 808


>gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
 gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           sanguinis VMC66]
          Length = 826

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/841 (41%), Positives = 522/841 (62%), Gaps = 35/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV   K +
Sbjct: 9   QDRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPH 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 69  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVD+  NYD S +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 129 EARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP+     +ME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 189 PHNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVMGKSGIHRAYETGKGSIVLR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE+I+VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ T +Q+ FS NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNGVPKILSLREILLAYIEHQKEVVTR 368

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT +   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 369 RTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAK----------- 417

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 418 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 462

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR
Sbjct: 463 AKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSLEDEDLIEEADVLITLSNKGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +  + + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 523 LNQAEFTAQKRGGRGVQGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYG 582

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +D    ++ Y+ F T+HG V+R  +++F  I +
Sbjct: 583 RTAKGLPVVNLLKLDEGETIQTIINVQQDR--SDDSYLFFTTRHGVVKRTSVTEFANIRQ 640

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V       D+++ TK G  VRF  +A+R  + R + GVRG++L 
Sbjct: 641 NGLKALNLKDEDELINVFLTDGTADVIIGTKFGYSVRFNETAVRSMS-RIATGVRGVNLR 699

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GDQV+   ++   D             +      +           + + +        
Sbjct: 700 EGDQVVGAGVIAEGDEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITDKNGPLAGLM 759

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 E+ ++ ++  G   RTS  +   + RS  G++   +   ++   +V    V  N
Sbjct: 760 TVTG--EEDLMIITNTGVIIRTSVANISQTGRSTMGVKVMRL---DQNAQIVTFTSVEAN 814

Query: 851 D 851
           D
Sbjct: 815 D 815



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 98/239 (41%), Gaps = 22/239 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ +      +     +F +S       R S  +  + L      
Sbjct: 389 IALDHIDEVIRIIRNSETD---AEAQAELMAKFELSE------RQSQAILDMRLRRLTGL 439

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 440 ERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADDRRTELMVGEVLSL 499

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR +  +F    R G+G++ T V   + +  LV+    +
Sbjct: 500 EDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGVQGTGVKDDDFVKELVST---S 556

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            +D+++  ++KG + R+   EI    R  KG   V +    + E + ++  +++    D
Sbjct: 557 THDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEGETIQTIINVQQDRSDD 615


>gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
 gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M]
          Length = 835

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/911 (37%), Positives = 536/911 (58%), Gaps = 90/911 (9%)

Query: 1   MTEHIISSDEEE------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++    +DE           I  V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV R
Sbjct: 1   MSDQKTQNDEANNHKDHDHGNIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++GV  +  Y K AR+ G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++G 
Sbjct: 61  RILYSMKELGVYSHASYKKAARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGH 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K A  L+ ++ KDT+DF  NYDG+ +EP+VL    PN+
Sbjct: 121 GNFGSIDGDKAAAMRYTEVKMAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IPTHNLGEV+DG +  I+N DI +D LM+ I+GPDFPTG  +LG 
Sbjct: 181 LINGATGIAVGMATKIPTHNLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGL 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +K+AY TG+G+++++  SH+ K    +  I+VTEIPYQV K  ++EKIA LV+ K + 
Sbjct: 241 QSLKSAYHTGQGAVILKAKSHVSKER-GKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVE 299

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           +I DLRDES R+G ++VIELKR A++ +ILN+LY+++ L+  F +NMVAL G  P+  +L
Sbjct: 300 EITDLRDESSRKGMKIVIELKRDANSKIILNKLYKHSQLRISFGINMVALVGKTPQLVSL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+AF  FR EV+ R+  + L KA  R H++  L   + +++  +++I+ S + + A+
Sbjct: 360 KQILEAFFNFRIEVINRQKSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQ 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +LMQR                              E+Q++AILE+ L RL       + 
Sbjct: 420 SKLMQR--------------------------YNFDEIQSKAILEMSLQRLANQETQKLI 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCI 533
            E  +L  EI EC  I+ S+ +   I+++ELL +K +    R+T +     L+ EDED I
Sbjct: 454 TEEKNLTQEILECQSIIDSQKKKERILEKELLEMKKKYQDDRKTTLNFDAPLNFEDEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             + +++T+++ GY+K + +  Y+ Q+RGG+G SG+ + +EDF+  L I STH   LFF+
Sbjct: 514 EEKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEEDFIEHLAITSTHDYHLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY+ K + +P+G  Q++G  L+N L   + E +T+       + S +  Y+ FATK
Sbjct: 574 NKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFTSVKNFDQSQD--YLFFATK 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L ++  I++ G IA++L   DE+L+V   T   +I+L +  G  + F  + I
Sbjct: 632 KGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVNKTTGTKNIILASNNGNAICFCETKI 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  + RNS+GV G+ L   + ++  A+                                 
Sbjct: 692 KSIS-RNSMGVIGMRLGSDEFLVGAALFD------------------------------- 719

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 KEQ IL ++E GFGK T+   +RI  RSGKG +   V+
Sbjct: 720 -------------------TDSKEQNILVMTENGFGKITNVNQYRIQERSGKGSKTIKVN 760

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVV 892
             ++ G L+ +  V   D +I+ SDKG ++RV +++I +  ++AT+G  I       + V
Sbjct: 761 --DQKGRLITLQVVLPTDDLIVSSDKGQVVRVAIDQITKTKNKATQGTRIIKLKTGHKAV 818

Query: 893 SVERIRESEIV 903
           SV  +++  + 
Sbjct: 819 SVAVVKKEVLD 829


>gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial;
           Flags: Precursor
 gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana]
          Length = 935

 Score =  780 bits (2015), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/919 (38%), Positives = 522/919 (56%), Gaps = 77/919 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   + D    + +    +  E   +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M +
Sbjct: 77  DRGENEDRNGGERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHE 136

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+   K Y KCAR+ GEV+GK+HPHG+ A+YD+L RMAQD+SLR  LI G GNFGS+D 
Sbjct: 137 LGLSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDA 196

Query: 123 DPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           DPPAA RYTECRL+     + L DL ++TVDF PN+D S +EP +L AR PN+L+NG  G
Sbjct: 197 DPPAAMRYTECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASG 256

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIP HNLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI  A+
Sbjct: 257 IAVGMATNIPPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAF 316

Query: 242 ATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            TGRG +VIRG + IE   +   R  I++ EIPYQ NKA+++EKIA+LV  K +  ++D+
Sbjct: 317 RTGRGRVVIRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDI 376

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIELKRG+   ++LN LYR T+LQS FS NMV +   +P+   L  +L+
Sbjct: 377 RDESDRSGMRIVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQPKLMGLKELLQ 436

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+ FR  VV RR ++ L++A++R H++ G+ + + NLDEV+  IR              
Sbjct: 437 AFLDFRCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIR-------------- 482

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                           ++           LSE Q  AIL++ L RLT L R+    E  S
Sbjct: 483 ------------KASSNALAAASLRKEFELSEKQAEAILDISLRRLTALERNKFVEEGKS 530

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDM 538
           L  +I +  ++LSS+ ++L +I++E + +K++   PRR+        D+ED D I  E+M
Sbjct: 531 LRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRRSMLEDTDSGDLEDIDVIPNEEM 590

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++ +S  GYVKR+    +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V
Sbjct: 591 LLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTV 650

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y    +++P  S  A G  L+ ILSL+ GERIT+I+P  E      + Y+V  T +G ++
Sbjct: 651 YSSPAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFA---ADQYLVMLTVNGYIK 707

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L+ F  I  +G IA++L   DE+  V+ C+  + + + ++ G  +  P + IR   G
Sbjct: 708 KVSLNYFASIRCTGIIAIQLVPDDELKWVKCCSNNDFVAMASQNGMVILTPCANIRAL-G 766

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ G   + L +GD+V SM I+  A                                  
Sbjct: 767 RNTRGSVAMRLKEGDKVASMDIIPDA--------------------------------LQ 794

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             ++  +  ++ Q   +K  ++L VSE G+GKR     FR S  +  G+     S     
Sbjct: 795 KELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFS---SE 851

Query: 839 GALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++       +
Sbjct: 852 DCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGK 911

Query: 891 VVSVERIRESEIVDEAEST 909
           + S   I  ++   E E  
Sbjct: 912 IQSASLISAADADPEDEDA 930



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 96/280 (34%), Gaps = 61/280 (21%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V+R K   F        GK   KL   D +     C   
Sbjct: 579 LEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDFLVCRAH 638

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G     P   I     R + G   V+ +SL+ G+++ S+  V         
Sbjct: 639 DKVLYFSDKGTVYSSPAYKI-PECSRTAAGTPLVQILSLSDGERITSIIPVSE------- 690

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                         +Q+++ ++  G+ K
Sbjct: 691 -------------------------------------------FAADQYLVMLTVNGYIK 707

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           + S   +  S R   GI A  +        L  V   ++ND + + S  G +I  P   I
Sbjct: 708 KVSLN-YFASIRCT-GIIAIQLVP---DDELKWVKCCSNNDFVAMASQNGMVILTPCANI 762

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R   R T+G V     + ++V S++ I ++   +  ++ E
Sbjct: 763 RALGRNTRGSVAMRLKEGDKVASMDIIPDALQKELDKTLE 802


>gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221]
 gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221]
 gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3]
          Length = 862

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
 gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b]
          Length = 855

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/895 (39%), Positives = 534/895 (59%), Gaps = 65/895 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  ++I+ EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K +
Sbjct: 3   EQENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+S R  L++G GNFGSVDGD  AA RYT
Sbjct: 63  KKSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  L+ D+GK+T+D++PN+DG  +EPVVL AR+PN LVNG  GIAVGMATN+P
Sbjct: 123 EARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A+  NPDI +  LM+ I GPDFPT   ILGR+GI+ AY TGRGSI +R
Sbjct: 183 PHNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEILGRSGIRRAYETGRGSITMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE     RE+I+V EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+V
Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R A+A VILN LY+ T +Q+ F VNM+AL G +P+   +   +  ++  ++EVV R
Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGRPKTLNIKQAIYYYIEHQKEVVRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA  RAH+L GL +A+ +LDEV+ IIR +   + AR +L+ R           
Sbjct: 363 RTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIAR----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS  QT+AIL++RL RLTGL R+ I  E   +   I+E   IL
Sbjct: 412 ---------------FGLSTEQTQAILDMRLQRLTGLEREKIEGEYREVKALIEELRAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
                LL II+ EL+ +K+     RRT I   ++++EDED I   DM++T++  GY+K +
Sbjct: 457 GDEELLLDIIRNELIEIKERYGDARRTVIRTDIVELEDEDLIPVRDMMITLTSEGYIKSI 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P   YR QRRGG+G+ G+   DEDFV  L   STH ++LFF++ G V++ K + +P  S 
Sbjct: 517 PSDSYRTQRRGGRGKQGMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSR 576

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            A+G  +IN+L +++GE++ T++P                             F     +
Sbjct: 577 TAKGMPIINLLQIDKGEKVETMIPVD---------------------------FNSYLAN 609

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +A +     E ++     ++  ++  TK G   R P+SA       N  G+R ISL +
Sbjct: 610 QTVAEETQDESEEVA----DEQLSLVFITKEGLIKRSPLSAYARI---NKNGLRAISLNE 662

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+++++  +  +D +          +                      ++         
Sbjct: 663 TDELVTVR-LAKSDDEMLIVTRQGMSIRFPLEGEVRSMGRTARGVRAIRLKKEDDLVVSM 721

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+    Q +L ++EKG+GKRT+   FR   R      +  +    + G +V +  V+++D
Sbjct: 722 EIVRTTQDVLIITEKGYGKRTAMEQFRTQGR----GGSGIIGIKTDRGTVVGMRVVDEDD 777

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            I+L+++ G  IR+    I    R+T+GV + +  + +R+ ++ ++++ E+ +E+
Sbjct: 778 DIMLMTELGVAIRIDSQTISQMGRSTRGVKVMNIEEGDRLATIAKLKKDELEEES 832



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 103/246 (41%), Gaps = 11/246 (4%)

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
             E E+    +  +V ++  G +KR PLS Y    + G     + + + D +  + +  +
Sbjct: 617 QDESEEVADEQLSLVFITKEGLIKRSPLSAYARINKNG--LRAISLNETDELVTVRLAKS 674

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +L  +  G   +  +     G  ++ G+    + ++   +    ++      ++ + 
Sbjct: 675 DDEMLIVTRQGMSIRFPL----EGEVRSMGRTARGVRAIRLKKEDDLVVSMEIVRTTQD- 729

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQ 704
             V+  T+ G  +R  +  F    R G   + + +    ++ +    +++DI+L T+LG 
Sbjct: 730 --VLIITEKGYGKRTAMEQFRTQGRGGSGIIGIKTDRGTVVGMRVVDEDDDIMLMTELGV 787

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +R     I    GR++ GV+ +++ +GD++ ++A +   + + +  +        +   
Sbjct: 788 AIRIDSQTISQM-GRSTRGVKVMNIEEGDRLATIAKLKKDELEEESAVDLENGFEDEAPE 846

Query: 765 ISGDTE 770
               ++
Sbjct: 847 TDESSD 852


>gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum]
          Length = 854

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 376/902 (41%), Positives = 522/902 (57%), Gaps = 91/902 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  +  D   E   T+VSI +E++ +YL Y+++VI+GRA+PD RDGLKPV RR+LF M +
Sbjct: 2   DTPLPQDAPRE---TTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHE 58

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MGV     Y K ARI G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDG
Sbjct: 59  MGVRPGTAYRKSARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDG 118

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL + A  ++ +L ++TVD+ PNYD S +EP VL A  P +L+NG  GI
Sbjct: 119 DAPAAMRYTEIRLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGI 178

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HN+ EV++  + ++DNP+     LM  + GPDFPTG VILGR+GI++AY 
Sbjct: 179 AVGMATNIPPHNITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVILGRSGIESAYR 238

Query: 243 TGRGSIVIRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           TGRGSIV+RGV  +E  T  DR+ +V+ EIPY VNKA ++EKIAELVREK+I  IAD+RD
Sbjct: 239 TGRGSIVMRGVVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRD 298

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ESDR G R+V+ELKR A   +I+NQL+  T LQS F  N V++   +PE  +L   L+ F
Sbjct: 299 ESDRDGMRIVVELKREAIPRIIMNQLFLLTPLQSSFGYNAVSIVNGRPETLSLSQTLRVF 358

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR++VV RRT + L KAR+R H+L GL  A+  +DE++ +IR S +PE AR  L+   
Sbjct: 359 LGFRKDVVTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVS-- 416

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                   T   SE+Q +AIL+LRL RLTGL R+ I  E   + 
Sbjct: 417 ------------------------TFAFSELQAQAILDLRLQRLTGLEREKIEAEYREVA 452

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I     IL+SR  LL +I+QE   + +     RRT IV    ++  E  I  E  +VT
Sbjct: 453 ALIASLEAILASREALLEVIRQETRVLLERFGDGRRTVIVPDEGELTPEALIPDEPYIVT 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY+KR+P +V   QRRGGKGR GV ++++D +        H ++LFF+ LG VY+ 
Sbjct: 513 LSYEGYIKRMPDAVLPTQRRGGKGRIGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRL 572

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP     ARGK L+++LSL+  ER+  I+P    E    +  ++F T  G  ++ +
Sbjct: 573 KTYELPEAQRTARGKHLLSLLSLSPDERVAAILPVRSFE---GDNLLLFGTVKGYFKKTR 629

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           LS++  I + G IA  L+  D +  V     +  +L+ T+ G  +RF    IR   GR +
Sbjct: 630 LSEYANIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGMSIRFEADNIRP-TGRAT 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVR I L+  D V+S   V  +D                                    
Sbjct: 689 RGVRAIRLSPDDSVVSFEEVSDSD------------------------------------ 712

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L  +EKGFGKR  +  FR+  R GKG+R   V+   E GA+
Sbjct: 713 -----------------LLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTP--ETGAV 753

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRE 899
           VA+  V + D I +V+D G +IR+P  EIR   R  KGV + S +    E +V      +
Sbjct: 754 VAILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGAKGVKLVSLSDSPQETIVCAAINPK 813

Query: 900 SE 901
            E
Sbjct: 814 RE 815


>gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 779

 Score =  780 bits (2014), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/860 (40%), Positives = 517/860 (60%), Gaps = 88/860 (10%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G
Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMG 180

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           ++GI  AY TG+GSIV+R  + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI
Sbjct: 181 KSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRI 240

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I  +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +
Sbjct: 241 EGITAVRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILS 300

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A
Sbjct: 301 LRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEA 360

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + ELM +                            LSE Q++AIL++RL RLTGL RD I
Sbjct: 361 QAELMSK--------------------------FKLSERQSQAILDMRLRRLTGLERDKI 394

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDC 532
           ++E + L   I +  DIL+   R+  IIK EL  VK +    RRT ++   +L +EDED 
Sbjct: 395 QSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQILSLEDEDL 454

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I   D+++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF
Sbjct: 455 IEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFF 514

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + +P     A+G  ++N+L L++ E I T++    D S  ++ Y+ F T
Sbjct: 515 TNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTT 572

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           +HG V+R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G  VRF  SA
Sbjct: 573 RHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 632

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R  + R + GV+G++L +GD V+  +                                 
Sbjct: 633 VRGMS-RIATGVKGVNLREGDTVVGAS--------------------------------- 658

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                               L   +  +L ++EKG+GKRT + ++    R GKG++   +
Sbjct: 659 --------------------LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKI 698

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ++ N  G L  +  V  ++ +++++D G +IR  +  I    RAT GV +    +D ++V
Sbjct: 699 TEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 756

Query: 893 ---SVERIRESEIVDEAEST 909
              +V    + E+  E E+ 
Sbjct: 757 TFTTVAVAEKEEVGTENETE 776


>gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
 gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217]
          Length = 845

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/846 (41%), Positives = 515/846 (60%), Gaps = 36/846 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD   N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A I+N DI++D LM+ I  PDFPTG  I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIYGYDGVREAFKTGRGRVVLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    RE I+V+EIPYQVNKA M++K A+LV EK+I  IA +RDESDR+G R+V
Sbjct: 243 AKAIIEEVK-GRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN L++YT+LQS FSVN +AL   +PE   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGRPEMLNLKDMIHHFVDHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA DRAH+L GL IA  N+DEV+ +IR S N E AR++L+ R           
Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q RAI+E+RL +LTGL +D +R E   L   I++  DIL
Sbjct: 411 ---------------FELTEIQARAIVEMRLRQLTGLEQDKLREEYEELLKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + IIK+EL  ++ +    RRT I     D+   D I  E +V+T+SH GYVKR 
Sbjct: 456 ARKERRMDIIKEELEEIRAKYGDERRTDIDIAGGDVSITDLIPDEKVVLTISHAGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+ Q RGG G+ G   R+EDF+  LF+ + H  ++FF+  G  +  +V+ +P GS 
Sbjct: 516 SLMEYKTQNRGGVGQKGSTTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++   +++   +   +  DE   N+ YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEPDDKVKAFICTNDLKDEEYINSHYVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L+ +  T ++ ++L  K G+ +RF     R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKEGDELLAAKLTTGDSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+VI M  V   +++            +              +K  S  E   +  
Sbjct: 695 ADDNDEVIGMVAVNDPESNVLVVSENGYGKRSLVEDYRVTNRGGKGVKTISVTEKTGNLV 754

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
               +   E  ++ +++ G   R    + R+  R+ +G+R  ++    +   + AV  V 
Sbjct: 755 AINNV-TDEDDLMIINKSGIAIRMEVSELRVMGRATQGVRLINLK---KGDTIAAVTKVK 810

Query: 848 NDNDQI 853
            D D I
Sbjct: 811 KDEDDI 816


>gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
 gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411]
 gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734]
          Length = 837

 Score =  780 bits (2013), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/901 (35%), Positives = 494/901 (54%), Gaps = 90/901 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    SD      +T + + +EM++SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDNNGSDNLF-DRVTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG++AIYD L R+AQ WS+R  L++GQGNFGS 
Sbjct: 60  FDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ D+ ++TV+F+PNYDG   EP VL +R PN+L+NG G
Sbjct: 120 GNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ +    ++DNPD +        ME ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV+ IE+  G+R+ I++TE+PYQVN   ++  IAE +R+ +I  I
Sbjct: 240 IQDTYRTGRGSIRMRGVTSIEE-EGNRQVIIITELPYQVNPDNLVASIAEQIRDGKIAGI 298

Query: 297 ADLRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DES DR G R+VI LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 299 SKIDDESSDRVGMRIVITLKRDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + +V+VRRT++ L++A  RAH+L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 359 QMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEART 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + EVQ   IL ++L RL  + R  I +
Sbjct: 419 GLI--------------------------DLLDVDEVQADHILAMQLRRLAAMERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  L   I +   IL S  R   I++ EL  + D+    RRT+I+    D+ +ED I R
Sbjct: 453 ELAELEETIADLKAILESPQRQRDIVRTELAEIVDKYGDERRTQIIAASGDVSEEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR+QRRGGKG  G  ++ +D V   F+ STH ++LFF++ 
Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNF 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ + + LP  +  ARG+ + N+L    GE+I  ++     E   +  Y+V AT HG
Sbjct: 573 GRVYRLRAFELPEATRTARGQHVANLLEFQPGEQIAQVIQIQSYE---DAPYLVLATAHG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V++++L+D+                                                  
Sbjct: 630 RVKKSRLTDYDTAR---------------------------------------------- 643

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
                S G+  I+L +GD+++    +  A+ D        + M       +       + 
Sbjct: 644 -----SGGLIAINLNEGDRLVGAQ-LCTAEDDLLLVSEEGQAMRFTADDETLRPMGRATA 697

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                      +     +  ++  +   +  G+GKRT   ++    R G G+ A    K 
Sbjct: 698 GVKGMRFREEDQLLALTVVAEDSSLFVATSGGYGKRTPMEEYPTKGRGGLGVVAFKYDK- 756

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + G L+    VND+D+I+ ++  G +IR  V++IR + RAT GV +   AK   +V+V+
Sbjct: 757 -KRGKLIGALTVNDDDEILAMTSNGGVIRTEVSQIRHSGRATMGVRLVDLAKGNELVAVD 815

Query: 896 R 896
           R
Sbjct: 816 R 816


>gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6]
          Length = 863

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595]
 gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595]
          Length = 854

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/922 (35%), Positives = 503/922 (54%), Gaps = 101/922 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E +I   +     I  V +  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M
Sbjct: 1   MAEEMI---QYNHGLIKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   +  + K  +I G+VMG +HPHG+AAIYD + R+ Q W++R  L+ GQGNFG+ 
Sbjct: 58  WDGGYRPDSSFSKSVKIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTA 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                AA RYTE R+ + A  ++ D+ ++TVDF PN+DGS QEP VL AR+PN+LVNG  
Sbjct: 118 GDLGAAAPRYTEARMAQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSE 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV  G    +DNP+   + L++     ++GPDFPTGA ILG  G
Sbjct: 178 GIAVGMATRIPPHNLREVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTKG 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TG GSI  R +  +++    R+ +VVT++P+QVN   +L+K+ E +++ R+  I
Sbjct: 238 IESMYRTGNGSITQRAIVEVDEI-NGRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGI 296

Query: 297 ADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDES  R G R+VI LK+ A A V+LN LY++T +Q+ F  NM+AL    P   +L 
Sbjct: 297 ADIRDESSGRAGQRIVIVLKKDAVAKVVLNNLYKHTQMQNNFPANMLALVDGVPRTLSLD 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V  + EV+ RRT++ L K  +R  +L GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 357 GFVRHWVNHQIEVIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEARE 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + ++E+Q   IL ++L RL  L R  I +
Sbjct: 417 GLMK--------------------------LLDINEIQADHILAMQLRRLAALERQKILD 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E +       +  DIL+   R   I+  E+  +  +    RRT+I+    ++ DED I  
Sbjct: 451 ERDEKLALRDDYQDILAKPERQRTIVSDEVGDIVAKFGDDRRTKILPFDGEVSDEDLIPE 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D+VVT++  G+VKR  +S YRAQ RGGKG  G  +RD+D V    + STH   LFF+++
Sbjct: 511 DDVVVTITRSGFVKRTKVSEYRAQHRGGKGIKGTTLRDDDIVEHFEVTSTHDWQLFFTNM 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP G+  A+G+ + N+L+    ERI +++     +      Y+V AT+ G
Sbjct: 571 GRVYRIKGYELPEGARDAKGQHIANLLAFQPDERIASMVSIRSYD---QADYLVLATEDG 627

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRFPI 710
            V++ +L+D+      G IA+KL        D ++S        D+LL ++ GQ +RF  
Sbjct: 628 LVKKTRLADYDSARTGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVSRGGQSLRFTA 687

Query: 711 SA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               +R   GR + GV G+     D++++M +V                           
Sbjct: 688 DDATLRPM-GRATSGVTGMKFRGDDRLLAMDVVDEG------------------------ 722

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                          +  V+E G+ KRT    +R+  R+G GI+
Sbjct: 723 -----------------------------AEVFVVTEGGYAKRTDIEQYRVQGRAGLGIK 753

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             +V +    G LV     +  D+++++ + G ++R  V+E+ +  R T+GV   +  K 
Sbjct: 754 VANVVEA--RGDLVGALITHPGDEVMVIMESGKVVRSAVDEVSLTGRNTQGVKFATPDKG 811

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           ++++S+    E +  DE  +T+
Sbjct: 812 DKIISIALNLEKQEDDEEVTTD 833



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 88/245 (35%), Gaps = 14/245 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV--LFFSS 594
           D +V  +  G VK+  L+ Y + R GG     +  R++  +  L           +   S
Sbjct: 618 DYLVLATEDGLVKKTRLADYDSARTGGLIAVKLREREDGTMDRLVSARLLDDGADVLLVS 677

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G              P  R  + +  +     +R+  +              V   T+ 
Sbjct: 678 RGGQSLRFTADDATLRPMGRATSGVTGMKFRGDDRLLAMDVVD------EGAEVFVVTEG 731

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPI 710
           G  +R  +  + ++     + +K+ +  E    ++        +++++  + G+ VR  +
Sbjct: 732 GYAKRTDIEQY-RVQGRAGLGIKVANVVEARGDLVGALITHPGDEVMVIMESGKVVRSAV 790

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +    GRN+ GV+  +  KGD++IS+A+ L    D +E    +   + +         
Sbjct: 791 DEV-SLTGRNTQGVKFATPDKGDKIISIALNLEKQEDDEEVTTDVVEPTTEPVSEQDAET 849

Query: 771 EITSL 775
                
Sbjct: 850 TTDVE 854


>gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 867

 Score =  779 bits (2012), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/899 (40%), Positives = 534/899 (59%), Gaps = 94/899 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I  V +  EM+ S++ YA++VI  RA+PD+RDGLKPVHRRILF M   G   +K 
Sbjct: 21  DNINNIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKP 80

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCA   G V+G +HPHG+AA+YD++ R+AQD+S+R  +++G GNFGS DGDPPAA RY
Sbjct: 81  YRKCATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRY 140

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  ++ D+ K+TVDF+PN+D    EP+VL +R+PN+LVNG  GIAVGMAT+I
Sbjct: 141 TEARLTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDI 200

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE +D  V  I+NPD DL+ +MEI+ GPDFPTG  ILG +GI+  Y TG+G I +
Sbjct: 201 PPHNLGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTILGLSGIRETYRTGKGRITV 260

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYR 309
           R  + IE    +R +IVV ++PY VNKA ++EK+A+LV+EKRI  I+ +RDESDR    R
Sbjct: 261 RSAASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIR 320

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-----YKPERFTLIGILKAFVAF 364
           +VIELKR A+  V+LN+LY+ T LQ  F+ NM+AL       Y+P+  TL+  L  ++A 
Sbjct: 321 IVIELKRDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAH 380

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           ++ VV+RRTK+ L+KA  R H++ GL  A+ N+DEV+RIIR S N ETA++ L +R    
Sbjct: 381 QKSVVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCER---- 436

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    S  Q + I+++RL RLT L R+ ++ EL+ L ++I
Sbjct: 437 ----------------------FDFSIRQAQHIVDMRLGRLTALERERLQKELDELIVKI 474

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVS 543
           +    I++  S L  +I  EL  +K      RRT I      + EDE+ +  E++V+T++
Sbjct: 475 EYFNRIINESSLLNQVICDELTDLKTRYANKRRTVIEPYSLDEFEDEELVKEEEVVITLT 534

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVKR P+  Y+ Q RGG+G SG+  R++DFV  L   STH  +LFF++ G V++ K 
Sbjct: 535 HFGYVKRQPVDTYQQQHRGGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKG 594

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++P    QA+G+A++N+L L +GE++ T++   E        Y++ AT  G +++  L 
Sbjct: 595 YQIPEAGRQAKGQAIVNLLQLVEGEKVRTVITVHEFNR---EDYLLMATARGMIKKTSLY 651

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I ++G IA+ L   DE++ V+      +++L T  G  +RF  + IR   GRN+ G
Sbjct: 652 EYANIQKNGLIAINLRPDDEVIGVKVSRLHEEVILATAGGYSLRFDTNDIRN-TGRNTFG 710

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V GI L   D+VI MA V                                          
Sbjct: 711 VSGIKLRHSDKVIGMAAVDE---------------------------------------- 730

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E+ +L +S+ G+GKR+   ++RI NR GKG+     ++  + G L  
Sbjct: 731 -------------ERHLLVISKNGYGKRSEFNEYRIQNRGGKGLITYKPTE--QTGDLAG 775

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +  +ND D II+++D G +IRV   EI I SR TKGV +  TA   ++V +  ++  + 
Sbjct: 776 IASINDEDDIIIINDAGIVIRVATKEIPILSRVTKGVRLMRTAG--QIVDLAVVQHDDE 832


>gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 863

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/942 (38%), Positives = 553/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VV++ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVNIAKCPKEENDEDELSDE 856


>gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 829

 Score =  779 bits (2011), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/842 (42%), Positives = 519/842 (61%), Gaps = 38/842 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  I S+++       ++I+ E++ SYL YA++VI+GRA+PD+RDGLKPVHRR LF M
Sbjct: 1   MTEPSIESNQQPT-----IAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G  +N+ Y+K ARI G+V+GKYHPHG+ A YD L RMAQD+S+R  L++GQGNFGS+
Sbjct: 56  RELGNTYNRPYIKSARIVGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSM 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ +    L+ DL K+TVDF PNYD S QEP VL +R PN+L+NG  
Sbjct: 116 DGDSAAAMRYTEARMTRLDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSE 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT IP HNL EV++G +A++DNP+I +  LMEII GPDFPTG  I GR GI+ A
Sbjct: 176 GIAVGMATKIPPHNLTEVINGLIALVDNPEITVHQLMEIITGPDFPTGGFICGRAGIREA 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R  +HIE+     E IV+TEIP+Q NKAA++EKIA L++EKRI  IA++R
Sbjct: 236 YETGRGVIVMRSKTHIEQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV++L++    D+++NQLY+ T LQ  F + ++ +   KPE   L  IL+ 
Sbjct: 296 DESDRHGVRVVLDLRKDEIPDIVINQLYKMTPLQKSFGIILLCIVNNKPEILNLKQILQH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R+ VV RRT + L KA +RAH+L GL IA+ +LDEVV +IR S NP  A+  L+ R
Sbjct: 356 FLAHRKTVVYRRTAFELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILR 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q + IL++RL RLTGL RD I ++ N +
Sbjct: 416 --------------------------FELSEIQAQTILDMRLQRLTGLERDKIISDYNEI 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I     +L+  + ++ II++E   +++E    RRT I++   ++  ED I  E+MVV
Sbjct: 450 QAKISWLKQVLADDNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVV 509

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TVSH GY+KR PL++YRAQRRGGKG  G+V  ++DFVT L+  S+  + LFF++ G V+ 
Sbjct: 510 TVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTLEDDFVTSLYTASSLDTFLFFTNKGRVFW 569

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ LP+    ARGKA++N+L L + E++  I+P  +  +  + + V+  TK G V++ 
Sbjct: 570 RKVYELPLAGRTARGKAIVNLLELGEDEKVAAILPVADLANMDDTVSVLTVTKQGRVKKT 629

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +S++ +  R GK  + +   DEILS    + +++I L TK G  + F  S +R   GR 
Sbjct: 630 FISEYKRPLRKGKFGLTIRDDDEILSAAITSGDDEIFLVTKKGLSIHFHESDVRAM-GRL 688

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+GI+L   D+V+ +A++    +            +A                  +S
Sbjct: 689 AAGVKGITLGDDDEVVGVAVLKSDASILTVTENGYGKRTAVSEYKLQSRGGKGVFTIKTS 748

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                       +   E  ++ V+  G   R      RI  R+ +G+R  ++ +    G 
Sbjct: 749 ERNGNVVGVLPVV--DEDQVMLVANSGKVIRMPMDTVRIIGRNTQGVRLINLDE----GE 802

Query: 841 LV 842
           LV
Sbjct: 803 LV 804



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 18/214 (8%)

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICY 754
           K G  +RF +S I+      +  +  + L      + D++IS    +    +   + +  
Sbjct: 409 KEGLILRFELSEIQ------AQTILDMRLQRLTGLERDKIISDYNEIQAKISWLKQVLAD 462

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
              +    R       E       + +     E   ++L   E+ ++TVS  G+ KR   
Sbjct: 463 DNLVVQIIREEFEKIREEYGDDRRTEIIDAPDEILPEDLITPEEMVVTVSHTGYIKRNPL 522

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R   R GKG++     + +    + +++  +  D  +  ++KG +    V E+ +A 
Sbjct: 523 TLYRAQRRGGKGVKGMVTLEDDF---VTSLYTASSLDTFLFFTNKGRVFWRKVYELPLAG 579

Query: 875 RATKG---VVIFSTAKDERVVSVERIRESEIVDE 905
           R  +G   V +    +DE+V ++  + +   +D+
Sbjct: 580 RTARGKAIVNLLELGEDEKVAAILPVADLANMDD 613


>gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH]
          Length = 839

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/903 (36%), Positives = 520/903 (57%), Gaps = 88/903 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL D+ KDTVDF  NYDG  QEP VL A +PN+L NG  GIAVGM+T
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP+HNL E++ G + +IDNPD  ++ L+ +I+GPDFPTGA I+   GI++ + TG+G++
Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNV 252

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR    IE+    R  +VVTEIPY VNK +++EKI ELV+ + I  IAD+RDES R+G 
Sbjct: 253 VIRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P+   +   L  ++  + +V
Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+T++ L K ++R H+L GL IA  N+DEV+ II+ S N + A   L +R        
Sbjct: 372 LIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q RA+L++RL  L+ L  + ++ E   L   I+ C 
Sbjct: 424 ------------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQ 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +L+ +   L +IK++L  + ++   PRR+ I+     D++DED I +E++V+T+S  GY
Sbjct: 466 QVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P
Sbjct: 526 LKRIGVDSYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G    +G   +N++ +++ E+I  ++   +      N Y  F TK+G ++R  LS+F  
Sbjct: 586 PGFRTNKGIPAVNLIKIDKDEKICALISVNDY----QNGYFFFCTKNGTIKRTSLSEFAN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I   GK A+     D + SV   + ++DI + +  G  VRF    +R  + R ++GV GI
Sbjct: 642 ILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +G+ V  ++   +                                            
Sbjct: 701 NLNQGEFVNGLSTSSNG------------------------------------------- 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+V + G GK TS   +R++ R+ KG++   V+   + G +V    V
Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTV 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             N+ ++++S  G ++R+ + ++    + T GV +    + ER+ +V   ++ E +    
Sbjct: 766 FGNEDLLMISSAGKIVRISLEQLSEQGKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTT 825

Query: 908 STE 910
           +TE
Sbjct: 826 ATE 828


>gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8]
          Length = 804

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/887 (38%), Positives = 527/887 (59%), Gaps = 90/887 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + DE+  SYL Y+++VI+GRAIPD+RDGLKPV RRIL+GM ++G++ N    K A
Sbjct: 5   LINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEVMGKYHPHG+A +YDAL RMA  +++R  LIEGQGNFGS+D DPPAA RYTE RL
Sbjct: 65  RIVGEVMGKYHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  +L+D+ K+TV+   N+DG+ +E  VL ++ PN+++NG  GIAVGMATNIP HNL
Sbjct: 125 TRLAEEMLEDIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E VD  + +ID+P+  ++ LM+ I+GPDFPTGAV++  + +K  Y  GRG I++RG  H
Sbjct: 185 SETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNASELKKVYEEGRGRIIVRGKVH 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +E      ++IV+TEIPY V+KA ++E+IA++ ++   + I ++RDESD++G R+VIE+ 
Sbjct: 245 VEDGKR-VKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIP 303

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           + A+ +VI+N LY+ T+LQ  F+V M+ ++ +K P    L G+++AF+  R EV+ RR +
Sbjct: 304 KDANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRAR 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y   +   RAHV+ GL  A   +  VV I+R S + E+AR+ LM+               
Sbjct: 364 YEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLME--------------- 408

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T+ ++E Q +AIL++RL+RLT L  ++++NE + L  +I E  +IL   
Sbjct: 409 -----------TLEITEEQAKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKD 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++  I+K+E L +K +   PRRT + +  ++  +E+ IV ED+V+T+SH GY+K  PL+
Sbjct: 458 EKVKEIMKKEFLYLKQQYGDPRRTEVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLN 517

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+Q+RGGKG +   + ++D V  + +    +S LF ++LG  Y  K ++L       R
Sbjct: 518 SYRSQKRGGKGITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTR 577

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGK 673
           G+ +   L+L   E+I  +              +V ATK G ++R  L +F       G 
Sbjct: 578 GRHITAFLNLEDTEKIVALASLN-----GEGRDLVIATKSGKIKRTALKEFENATSNRGV 632

Query: 674 IAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            A+K++  DEI+S      E + +++ TK+G  +RFP+S +R   GRN+ GV+ I L  G
Sbjct: 633 RAIKIEPGDEIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRM-GRNAAGVQAIKLQPG 691

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S+ ++   +                                               
Sbjct: 692 DEVVSVDVIPPGE----------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               E  ILTV+EKGFGKRT    +RI  R G G+R    S +N+ G +VAV  V  +++
Sbjct: 705 ----EGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNI--SDVNKTGYVVAVRYVRGDEE 758

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I++V+  G +IR PV+EI +  R TKGV +     D+ +  V  +++
Sbjct: 759 IVVVTRNGMMIRFPVSEIGVIGRVTKGVKLIELG-DDTISKVAVVKD 804



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 99/252 (39%), Gaps = 15/252 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             +    R+      ++  +E L V    +E+ ++  +  G     P+++ R    R   
Sbjct: 473 QQYGDPRRTEVTDQSIEYNEEELIV----EEDVVITLSHKGYLKSTPLNSYRSQK-RGGK 527

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLKNDSSV 781
           G+    L++ D+V  + +  +  +          ++    +L + G       +    ++
Sbjct: 528 GITVSKLSEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNL 587

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIG 839
           E          L  + + ++  ++ G  KRT+  +F    SNR   G+RA  +       
Sbjct: 588 EDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNR---GVRAIKI---EPGD 641

Query: 840 ALVAVFPVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +V+   VN   + ++V +  G  IR PV+++R   R   GV        + VVSV+ I 
Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIP 701

Query: 899 ESEIVDEAESTE 910
             E  +    TE
Sbjct: 702 PGEEGEILTVTE 713


>gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
 gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
 gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist]
          Length = 819

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/899 (37%), Positives = 503/899 (55%), Gaps = 90/899 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  V + +EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M + G    K +
Sbjct: 2   SEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+VMG++HPHG+AAIYDAL R+ Q W++R  L +GQGNFGS   D  AA RYT
Sbjct: 62  SKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++   A  ++ D+ +DTVDF PNYDG   EP V+  R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 ETKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            HNL EV  G +  ++NPD   +     L+E I+GPDFPTGA +L   GIK+AY TGRGS
Sbjct: 182 PHNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGS 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306
           +V+RGV  IE+    R  +VV E+PYQVN   +  KIA LV+E ++  IAD+RDE S R 
Sbjct: 242 VVMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRT 300

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R++I LKR A A V+LN LY++T LQ  F VNM+A+    P   +L   ++ +V  + 
Sbjct: 301 GQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCSFIRLWVEHQI 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRRT + L +A  RAH+L     A+  +DEV+++IR S + E A+  LM        
Sbjct: 361 EVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMA------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + + E Q RAIL+L+L RL  L R  I +E   +   I  
Sbjct: 414 -------------------LLKIDETQARAILDLQLRRLAALERQRIISEAREIEELISS 454

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHL 545
              ILS ++    +I +EL  +  +    RRT I+      +  ED I  E +VV ++  
Sbjct: 455 FRKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIEDLIPVEPVVVVMTRC 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  +  YR+Q RGG+G  G  ++ +D V      +TH  ++FF++ G VY+ K + 
Sbjct: 515 GYIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYE 574

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S +ARG+ + N+L L   E +T I+     +    +  +V ATK G V++  L ++
Sbjct: 575 VPEASREARGQHVANLLPLKPNEAVTRILSVSNFD--SEDTSLVLATKDGYVKKTTLKEY 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                +G IA+KL   D+++S      + DI+L TK  + +RF    +R  + R S GV+
Sbjct: 633 DTSLSTGVIAIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLS-RGSYGVK 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GISL + D ++S  ++L  D+                                       
Sbjct: 692 GISLRENDLLLSAELILSDDS--------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        +I  VSE+G+ KR+   D+++  R G G+R  ++++  + G L  + 
Sbjct: 713 -------------YIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITE--QKGVLADML 757

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            VND+D+++++   G +IR  V E+    R T GVV    +  ++++++    + + ++
Sbjct: 758 VVNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDGDKILAMTIAEKCDDLE 816


>gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae]
          Length = 867

 Score =  778 bits (2010), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/895 (35%), Positives = 523/895 (58%), Gaps = 88/895 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + E+  I    I +EM+NS+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  N 
Sbjct: 59  DSEKNNIIPKQIEEEMRNSFLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNS 118

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ ++YD++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 119 AYKKSARIVGDVLGKYHPHGDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 178

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++ + K+TVDF PNYDGS QEP VL  R+PN+LV+G  GIAVGMAT 
Sbjct: 179 YTEARMSKIASLMVEGIKKNTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATK 238

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  N DI ++ L + + GPDFPTGA I G +GI+ AY TGRGS +
Sbjct: 239 IPPHNLTEVINSFILLAKNNDISVEELAQSLPGPDFPTGATIFGVSGIQQAYKTGRGSFI 298

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  +  + +I+  EIPY+V K A++EK+ +LV+EKR+  I D+RDE++RQG R
Sbjct: 299 LRAKAKIETFNSGKSKIIFYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIR 358

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G + ++ILNQLY+ T  Q  +S+NM+A+   +P+   L  IL  ++  ++E+ 
Sbjct: 359 VVFEIKKGFNPEIILNQLYKETDFQISYSMNMLAIVKGEPKLLNLKEILYQYLLHQKEIN 418

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L K +++ +VL+G+ +AV N+DEVV+II+ S +   A+ +L +R         
Sbjct: 419 LRGLNFDLEKYKEKLNVLLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKR--------- 469

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+ +QT+AI+++RL RLT L  + +  E+  +  EI    +
Sbjct: 470 -----------------FDLNPIQTKAIVDMRLGRLTSLAIEKLMTEIEQIKAEINRIEE 512

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I++S  +L+ ++  + L + +    PRR+ I   + ++ DED I R D++++++   YVK
Sbjct: 513 IIASDEKLVQLVIDQHLEIINNFADPRRSEINGEIGNIIDEDLIPRSDVIISLTDNNYVK 572

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  YR Q RGG G S   +  +D++  ++  +THT +L  +S   ++K +  ++P  
Sbjct: 573 RINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFANTHTDLLIITSKAKIFKLRTHQIPDS 632

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           + Q +G   +N+L + + E+I T++ + +D +     ++V  ++ G +++  L  +  IN
Sbjct: 633 TKQGKGIPFVNLLPIEKDEQIYTLLVWNQDYAHH---FLVTVSRLGLIKKTPLEFYKNIN 689

Query: 670 RSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GK A+KL+  D ++S     +    ++L+ +  G+  +F   +IR   GR ++GV+GI
Sbjct: 690 KNGKYALKLNENDTLVSAFIVKENEPCEVLIGSSSGKVNKFDFDSIRS-TGRVAMGVKGI 748

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   + VI                                                   
Sbjct: 749 KLTNDEFVIG-------------------------------------------------- 758

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  L  +++  +   G+GK+TS  ++R ++R+ KG++  +     + G+L  +  +
Sbjct: 759 ---ASHSLSGEYVFALGRFGYGKKTSIDEYRQTSRNSKGVKTLNT---EKAGSLCFISII 812

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             N++ ++V+ KG LIR  + +I I SR TKGV I +   ++ + SV  + + E 
Sbjct: 813 KGNEEALIVTKKGILIRTSLQDINITSRNTKGVKIINIKDNDEIQSVTIVDKFEE 867


>gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 862

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 360/942 (38%), Positives = 552/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|323357951|ref|YP_004224347.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323274322|dbj|BAJ74467.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 876

 Score =  778 bits (2009), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/927 (37%), Positives = 506/927 (54%), Gaps = 114/927 (12%)

Query: 1   MTEHIISSDEE-------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M + I    +E           I  V +  EMQ SYL YA++VI+GRA+P + DGLKPVH
Sbjct: 1   MADDITPEPDEVRSEPAHNHGRIDQVDLQLEMQRSYLDYAMSVIVGRALPRVEDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+++GM   G   +K + KCAR+ GEVMG YHPHG+A IYDAL R+ Q WSLR  L  G
Sbjct: 61  RRVIYGMYDGGFRPDKSFSKCARVVGEVMGHYHPHGDAPIYDALVRLVQPWSLRYPLALG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS      AA RYTE ++ + A  ++ D+ ++TVDF  NYDG  QEPVVL +R+PN
Sbjct: 121 QGNFGSPGNQGAAAPRYTETKMSQLALEMVRDIEEETVDFEDNYDGQTQEPVVLPSRFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGA 229
           +LVNG  GIAVGMATNIP HNL EV  G +  ++NPD   + L    ME I GPDFPT A
Sbjct: 181 LLVNGSVGIAVGMATNIPPHNLREVSAGALWALENPDATREELLEALMERIPGPDFPTAA 240

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILG  GIK+AY TGRGSI +R V +IE+    R  +V+TE+PYQVN   +  KI +L R
Sbjct: 241 QILGTRGIKDAYRTGRGSITMRAVVNIEEIQ-GRTCLVITELPYQVNPDNVAVKIGDLAR 299

Query: 290 EKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           E +I  IAD+RDE S R G R+V+ LKR A A V+LN LY++T LQ  F  NM+A+    
Sbjct: 300 EGKITGIADIRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGV 359

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   +L G +  ++  +  V+VRRT+Y L KA +R H+L G   A+  LDEV+ +IR SP
Sbjct: 360 PRTLSLDGFVSHWIDHQVNVIVRRTRYRLRKAEERMHILRGYLKALDALDEVIALIRRSP 419

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             + A   L +                           + + ++Q +AIL+++L RL  L
Sbjct: 420 TAQDANEGLQK--------------------------LLDIDDIQAQAILDMQLRRLAAL 453

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDM 527
            R  I +E   L   I +  DIL+S +R   II+ EL  + D     RRT+I+     D+
Sbjct: 454 ERQKIVDEATELEARIADFNDILASPARQRTIIRDELTGIVDRFGDDRRTQILHGFDGDV 513

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I  E+MV+TV+  GY+KR     YR+Q RGGKG  G  +R +D V   F+ +TH 
Sbjct: 514 SIEDLIAEEEMVITVTRDGYIKRTRSDNYRSQHRGGKGVKGAQLRADDVVEHFFVTTTHH 573

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +LFF++ G VY+ K + +P     A+G+ + N+L+L   E I  I+   +        Y
Sbjct: 574 WLLFFTNKGRVYRSKAYEVPEAGRDAKGQHVANLLALQPDEEIAQILDIRDYSV---ATY 630

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS-------------RDEILSVETCTQEN 694
           +V AT++G V++ +L ++    + G IA+KL                DE++S     + +
Sbjct: 631 LVLATRNGLVKKTRLDEYDTNRQGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGD 690

Query: 695 DILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           DILL ++LG  +RF  +   +R   GR++ GV+G+   +GD ++S ++            
Sbjct: 691 DILLISRLGMSLRFSATDNALRPM-GRSTSGVKGMDFREGDSLLSASV------------ 737

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                       ++F+  V+E G+ KRT
Sbjct: 738 -----------------------------------------AKDDEFVFVVTEGGYAKRT 756

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  ++R+ NR G GI+   ++  ++ G L     V++ D++++V   G ++R  V E+  
Sbjct: 757 AVTEYRMQNRGGLGIKVARLT--DDRGVLAGGMMVSEGDEVLVVLASGKVVRSAVAEVPA 814

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRE 899
             R T GVV      D+R++++ R  E
Sbjct: 815 KGRDTMGVVFARAGGDDRIIAIARNAE 841



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 85/250 (34%), Gaps = 24/250 (9%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV-----------TDLFIVSTHTSVLF 591
           +  G VK+  L  Y   R+GG     +  +  D                 +V     +L 
Sbjct: 635 TRNGLVKKTRLDEYDTNRQGGVIAIKLRGQVSDEADETEQGGADELVSALLVDEGDDILL 694

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            S LG   +          P  R  + +  +   +G+             + ++ +V   
Sbjct: 695 ISRLGMSLRFSATD-NALRPMGRSTSGVKGMDFREGD------SLLSASVAKDDEFVFVV 747

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDS--RDEILSV--ETCTQENDILLTTKLGQCVR 707
           T+ G  +R  ++++ ++   G + +K+     D  +       ++ +++L+    G+ VR
Sbjct: 748 TEGGYAKRTAVTEY-RMQNRGGLGIKVARLTDDRGVLAGGMMVSEGDEVLVVLASGKVVR 806

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +    GR+++GV        D++I++A     +                    + 
Sbjct: 807 SAVAEV-PAKGRDTMGVVFARAGGDDRIIAIARNAERNLAETTETTTEPAAVPADEADAS 865

Query: 768 DTEEITSLKN 777
             E      +
Sbjct: 866 APETPEESTD 875


>gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 847

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/902 (37%), Positives = 523/902 (57%), Gaps = 61/902 (6%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+    IT V +T +M+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K
Sbjct: 3   EDMSNRITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGK+HPHG+++IY+ L RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  PYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF PNYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+     +++NPD+ +  LM+ + GPDFPTG V++G+ GI+ AY TGRGSI+
Sbjct: 183 IPTHNLGEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVMGKAGIRKAYETGRGSII 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+    +++I+V EIPY VNKA ++ +IA+L R K I  I D+ DE+DR G R
Sbjct: 243 VRAKVDIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+++R ASA+VILN LY+ T +Q+ F+ NM+A+    P+  +L  IL+ ++  +E+VV
Sbjct: 303 IVIDVRRDASAEVILNNLYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQEDVV 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA+ R H++ GL IA+ ++DE++ IIR S   E A+ ELM           
Sbjct: 363 RRRTEFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELM----------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                          G   LS+ Q +AIL++RL RLTGL R+ I  E   L   I +  D
Sbjct: 412 ---------------GNYGLSDRQAQAILDMRLVRLTGLEREKIEAEYKKLTEAIADYKD 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL+ R R+  II  EL+ ++ +    RRT +    + ++EDED I  +D++VT++H GY+
Sbjct: 457 ILAHRERINQIIYDELMEIQKKFGDKRRTELQVGDITNIEDEDLIEEQDIIVTLTHNGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+P+  +++Q RGG+G  G+ + ++DF+  L   STH  +LFF++ G VY  K + +P 
Sbjct: 517 KRLPVDEFKSQHRGGRGVKGMGVHNDDFIEQLISSSTHDLLLFFTNSGKVYSMKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L+++  E+I+ ++    +  + ++ ++ F TK G V+R  + +F  I
Sbjct: 577 YGRAAQGIPIINLLNIDSKEKISAVINVSHET-NDDDKFLFFTTKDGTVKRTPVPEFKNI 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G  A+ L   DE++ V+    +  +++ T+ G  + F  + +R   GR + GVRGI 
Sbjct: 636 RSNGLKAINLHDDDELIDVDVIEDQQTMIIGTRNGYALSFNSAVVRSM-GRGAAGVRGIR 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI  A +   D             +            +     + + +      
Sbjct: 695 LRDNDSVIGAAPLHQDDNVLVISENGFGKQTPAAEYPIKGRGGLGVKTVNVTKKN--GPL 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   ++ I+ V+++G   R        + RS  G+    +    ++  +  V   +
Sbjct: 753 VGMTTVAGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDDGAKVATMAKVEKED 812

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           D+D                          +G       +D+   +VE   ++   +  E+
Sbjct: 813 DSDD-----------------------DAQG------TEDDS-ATVEVTDDANPDENTEN 842

Query: 909 TE 910
           TE
Sbjct: 843 TE 844


>gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           ATCC 12394]
          Length = 834

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/843 (41%), Positives = 529/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 88/233 (37%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A         +E
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNSDKE 834


>gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 834

 Score =  777 bits (2007), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/843 (41%), Positives = 529/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAAADTTPNNDKE 834


>gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
 gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2]
          Length = 807

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 363/835 (43%), Positives = 518/835 (62%), Gaps = 39/835 (4%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPVHRR+LF M  +   +N+ + K AR+ 
Sbjct: 10  VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQD+SLR  L++GQGNFGSVDGDPPAA RYTE R+ + 
Sbjct: 70  GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L DL K+TVDF P YDG+  EP+VL  + PN+L+NG  GIAVGMATNIP HNL E+
Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
             G   V+DNP+I L  LM +I GPDFPT   ILG+ GI +AY+TGRG I IR  + +EK
Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFILGKQGIIDAYSTGRGIIKIRSRAFVEK 249

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
            + ++E+I+V+EIPYQVNK  +LEKIA  VREK+I  I+++RDESDR G R+VIE+KR A
Sbjct: 250 FAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRDA 309

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A VILNQLY++T ++  F + ++A+   +PE  TL G++  F+  R E++VRRT + L 
Sbjct: 310 YALVILNQLYKFTQMEVSFGIILLAIVNGRPEILTLKGMIDHFIKHRREIIVRRTIFDLK 369

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  RAH+L GL  A+  LDEV+ +IR S + + A+  LM                    
Sbjct: 370 KAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAE------------------ 411

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE+Q +AIL++RL RLTGL R+ I  E  +L  +I     IL++ S +L
Sbjct: 412 --------FQFSEIQAQAILDMRLQRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVL 463

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            IIK+ELL +++     RR+ I++   +++ ED I  EDMVVTVSH GY+KR P+S+YRA
Sbjct: 464 DIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEEDMVVTVSHQGYIKRNPISLYRA 523

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           QRRGGKG +G   ++EDFV  LF+ S+H   LFF++ G VY +KV  +P G   +RGKA+
Sbjct: 524 QRRGGKGLTGAKPKEEDFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMSRGKAI 583

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N+L L +GER+ TI+P  + E      YVV ATK G V++ +L  +      G I +K+
Sbjct: 584 VNLLDLKKGERLATILPVRDYE---EGKYVVMATKMGFVKKTELKAYSHPRSVGTIGLKI 640

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+++V   + + DI LTTK G+ +RF  S +R   GR + G  GI +  G++V+ M
Sbjct: 641 RENDELIAVRVSSGDQDIFLTTKEGKSIRFKESELRSM-GRVAAGNIGIKMETGNEVVGM 699

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +                 + +    +        +   +S    +     +     E 
Sbjct: 700 ETLGEGATILTVTENGFGKRTNREEYPTQARAGKGVITIKTSERNGLVVYAYEVTDQDEL 759

Query: 799 FILTVSEKGFGK--RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
            I+T    G GK  R  + D  +  R+ +G++  D+ +  +   +V V  + ++D
Sbjct: 760 MIIT----GHGKIIRIRAADISVIGRNTQGVKLIDLGEGEK---VVGVAKIMEDD 807



 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 121/275 (44%), Gaps = 18/275 (6%)

Query: 636 FPEDESSWNNLYVVFATKHG--NVRRNKLSDFIQINRSGKIAM----KLDSRDE---ILS 686
                 + ++ Y +F T  G    ++           S   A+     L   +    IL 
Sbjct: 542 VEHLFVASSHDYFLFFTNKGRVYWKKVHEIP-EGGRMSRGKAIVNLLDLKKGERLATILP 600

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V    +   +++ TK+G   +   + ++ ++   SVG  G+ + + D++I+   V  +  
Sbjct: 601 VRDYEEGKYVVMATKMGFVKK---TELKAYSHPRSVGTIGLKIRENDELIA---VRVSSG 654

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D D  +   +  S + +     +    +  N        +E    E   +   ILTV+E 
Sbjct: 655 DQDIFLTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGNEVVGMETLGEGATILTVTEN 714

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           GFGKRT+  ++    R+GKG+     S+ N  G +V  + V D D++++++  G +IR+ 
Sbjct: 715 GFGKRTNREEYPTQARAGKGVITIKTSERN--GLVVYAYEVTDQDELMIITGHGKIIRIR 772

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             +I +  R T+GV +    + E+VV V +I E +
Sbjct: 773 AADISVIGRNTQGVKLIDLGEGEKVVGVAKIMEDD 807



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 6/167 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +L   A Y   +     +    +    +       +  S +  +  E   ++L  +E 
Sbjct: 443 EALLKDIAHYKAILATPSMVLDIIKEELLEIRNAYGDERRSEIIDDAEEIDMEDLIAEED 502

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++TVS +G+ KR     +R   R GKG+      + + +  L   F  + +D  +  ++
Sbjct: 503 MVVTVSHQGYIKRNPISLYRAQRRGGKGLTGAKPKEEDFVEHL---FVASSHDYFLFFTN 559

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
           KG +    V+EI    R ++G   V +    K ER+ ++  +R+ E 
Sbjct: 560 KGRVYWKKVHEIPEGGRMSRGKAIVNLLDLKKGERLATILPVRDYEE 606


>gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/843 (41%), Positives = 530/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834


>gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 817

 Score =  777 bits (2006), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/837 (42%), Positives = 525/837 (62%), Gaps = 34/837 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++  EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVITIIKEEMDEIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQRRGG+G  G  + D+DFV +L   +TH  + F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   E  S  N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIIS--EKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      +DI++ TK G  VRF  S +R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKEGDELINVIRTNGNDDIIIGTKTGYSVRFNESDVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+VI  + I    +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EGDEVIGASRITDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                  ++ I+ +++ G   RTS  D   + R+  G++   + +  +I  L  V P
Sbjct: 750 GLVTVNGDEDIMVITDTGVMIRTSVADISQTGRATLGVKIMRLDQDAKIMTLALVQP 806



 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 27/263 (10%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           VRR +        R+  +    + LD  DE++S+   ++ +   +  +     RF +S  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETD---VIAQGELMSRFNLSE- 415

Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766
                R S  +  + L      + +++ +    ++       D      + ++  +  + 
Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLTLIADLADILAKPERVITIIKEEMD 470

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G
Sbjct: 471 EIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRG 530

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883
           ++ T V+  + +  LV+    N +D I  +++KG + R+   EI    R  KG   V + 
Sbjct: 531 VQGTGVNDDDFVRELVST---NTHDHIYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLL 587

Query: 884 STAKDERVVSVERIRESEIVDEA 906
              + E V ++  I E    D  
Sbjct: 588 KLDEGETVQTI--ISEKGSDDNE 608


>gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
 gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414]
          Length = 862

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/942 (38%), Positives = 551/942 (58%), Gaps = 123/942 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D +L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R   HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKIHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR   ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREVMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +   AR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S   L  +I+ EL  ++++ D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSEILLENLIRDELKEIRNKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  +   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEILLSGSEENLENQEIKNLDDENLENEESA 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 SIKGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAIVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL+VS KG 
Sbjct: 747 -------------------------------------------------QEILSVSAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 856


>gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
 gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44]
          Length = 795

 Score =  777 bits (2005), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/820 (42%), Positives = 503/820 (61%), Gaps = 37/820 (4%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQD+S R +L++G GNFGSVDGD  AA RYTE R+ K +  L+ D+ K+T+D+
Sbjct: 61  YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NPDI +
Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT  +ILGR+GI+ AY TGRGSI++R    IE+    ++ I+VTE+PY
Sbjct: 181 AELMECIPGPDFPTAGLILGRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIAELVR+K+I  I DLRDESDR G R+V+E++R A+A+V+LN LY++T+L
Sbjct: 241 QVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q+ F +NM++L   +P+   L   L  ++  ++ V+ RRT Y L KA  RAH+L GL IA
Sbjct: 301 QTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLRIA 360

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LDEV+ +IR S   + AR+ LM+R                            LSE Q
Sbjct: 361 LDHLDEVITLIRSSKTADIARQGLMER--------------------------FGLSEKQ 394

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            +AIL++RL RLTGL R+ I  E   L   I E   IL+   ++L II++EL  VK+  +
Sbjct: 395 AQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFN 454

Query: 514 TPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
             RRT I   G+  +EDED I  +++ +T++H GY+KR+P S Y+ Q RGG+G  G+   
Sbjct: 455 DKRRTEITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTN 514

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+DFV  L   STH  +LFF++ G VY+ K + +P  S  A+G  +IN+L +++GE +  
Sbjct: 515 DDDFVEQLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLLGVDKGEWVNA 574

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  E     ++ Y+ F TK+G  +R  LS F  I  +G IA+ L   DE++SV   + 
Sbjct: 575 IIPIREFG---DDQYLFFTTKYGISKRTPLSSFANIRTNGLIAISLREEDEVISVRLTSG 631

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDER 751
           + DI++ T  G  +RF    +R   GRN+ GV+ I+L   DQV+ M IV    +     +
Sbjct: 632 DKDIIVGTSNGMLIRFNEQDVRSM-GRNAAGVKAITLGDEDQVVGMEIVEEDMNVLIVTK 690

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
             Y K    +   +     +     N +   G +   +       E+ I+ ++  G   R
Sbjct: 691 NGYGKRTPIEEYRLQSRGGKGLKTCNITDKNGKLVAVKSV---TGEEDIMLITAAGIIIR 747

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                     R+ +G+R   +    E+  +       D D
Sbjct: 748 MPVDQISQMGRNTQGVRLIRLENEQEVATVAKAQ--KDED 785


>gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
 gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160]
          Length = 821

 Score =  776 bits (2004), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/885 (40%), Positives = 507/885 (57%), Gaps = 91/885 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +  + +   + I  V I DEM+ SY+ YA++VI+GRA+PD RDGLKPV RRIL+ M
Sbjct: 1   MSSDVPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV     + K + I GE MG YHPHG++AIYDALARMAQD+SLR  L++GQGNFGSV
Sbjct: 61  EEMGVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+   A  LL D+ KDTVDF  NYD    EPVVL AR PN+LVNG  
Sbjct: 121 DGDPPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME------IIRGPDFPTGAVILGR 234
           GIAVGM+TNIP HNLGEV+D  + +IDNPD  +  L++       I+GPDFPTGA I+ R
Sbjct: 181 GIAVGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIVNR 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI +AY  GRG + +R    IE+T    ++IVVTE+PYQ NKA  +E+IAE V+E +I 
Sbjct: 241 EGIWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIE 300

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I D+RDESDR G RVVIE KRG++ADV+ NQL  +  L++ FS+  +AL   +P    L
Sbjct: 301 GIRDIRDESDRDGVRVVIECKRGSNADVVKNQLLEH-HLENTFSIISLALVDDQPRVLNL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+AFV  R EVV RR+++ L +A+DRAH+L G  +A+ N+D+VV  I+ S + + A 
Sbjct: 360 KELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRDAAM 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L +                             LSE Q   I+ ++L  LT +   +I 
Sbjct: 420 AALRK--------------------------AYDLSEDQAEHIVRMQLGSLTSMEAGEIE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E   +  EI+    IL+  S LLG+IK EL  +K E    R+T ++E    +  ED I 
Sbjct: 454 TEYEDVQAEIERLETILNDESELLGVIKDELRDIKAEYADERQTDVIEDAGSVTREDLIA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E++VV V+   YVKR+PLS +  Q RGGKG  G   ++ D V+ +F  STH  +L F++
Sbjct: 514 EEEVVVVVTEEDYVKRMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTN 573

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY+ KV+ LP     ARG + +N+L LN GE IT ++   +     +  Y+  AT+ 
Sbjct: 574 QGQVYRLKVFELPEMGRTARGTSAVNVLDLNDGEEITAVVNTDD----IDEGYLAMATEA 629

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V+R  +S+F  ++  G  A+ L+  D ++ VE    + D+L+ TK G  +RF  S  R
Sbjct: 630 GYVKRTAVSEFENVHAGGIRAVSLEDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDAR 689

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR++ GV GI L   D+   +      D                             
Sbjct: 690 PM-GRSARGVNGIKLEGDDRATGLVAASSDD----------------------------- 719

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                 ++ +LTV++ G+GKRT   ++R  +R GKG+      +
Sbjct: 720 ----------------------DRDLLTVTKNGYGKRTPLSEYRRQSRYGKGLVDIKTDE 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            N  G + ++  V+++D ++++S+ G ++R  V+EI    R TKG
Sbjct: 758 RN--GPVCSLDAVSEDDGLVIMSESGQIMRTTVDEISTVGRNTKG 800



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/255 (18%), Positives = 89/255 (34%), Gaps = 62/255 (24%)

Query: 655 GNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             V+R  LS+F   +R GK  +  +    D + +V T +  + +L  T  GQ  R  +  
Sbjct: 525 DYVKRMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFE 584

Query: 713 IRVFAGRNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +    GR + G   ++   L  G+++ ++      D                        
Sbjct: 585 LPEM-GRTARGTSAVNVLDLNDGEEITAVVNTDDID------------------------ 619

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      E ++   +E G+ KRT+  +F   +    GIRA
Sbjct: 620 ---------------------------EGYLAMATEAGYVKRTAVSEFENVHAG--GIRA 650

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +    +  +LV V   + +  +++ +  G  IR   ++ R   R+ +GV       D+
Sbjct: 651 VSL---EDDDSLVDVEVTDGDGDLLVGTKHGMTIRFDESDARPMGRSARGVNGIKLEGDD 707

Query: 890 RVVSVERIRESEIVD 904
           R   +      +  D
Sbjct: 708 RATGLVAASSDDDRD 722


>gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
 gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809]
          Length = 829

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 359/836 (42%), Positives = 508/836 (60%), Gaps = 84/836 (10%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD 
Sbjct: 1   MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAV
Sbjct: 61  AAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TG
Sbjct: 121 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+ 
Sbjct: 181 RGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETS 240

Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++ 
Sbjct: 241 LRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE 300

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR   
Sbjct: 301 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQR--- 357

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL++RL RLTGL RD I  E N L   
Sbjct: 358 -----------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNY 394

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTV 542
           I E   IL+    LL +++ EL  ++D     RRT I   G  D+EDED I  E +V+T+
Sbjct: 395 ISELEAILADEEVLLQLVRDELTEIRDRFGDDRRTEIQLGGFEDLEDEDLIPEEQIVITL 454

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           SH  Y+KR+P+S YRAQ RGG+G  G+   +EDFV+ L  +STH  VLFF++ G VYK K
Sbjct: 455 SHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLK 514

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S Q++G  ++N + L   E I+T++   + E    + ++VFATK G V+R+ L
Sbjct: 515 GYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLE--SEDNFLVFATKRGVVKRSAL 572

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S+F +INR+GKIA+     DE+++V   + + DIL+ T     +RFP S +R   GR + 
Sbjct: 573 SNFSRINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPL-GRTAT 631

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+GI+L +GD+V+ + +      D                                   
Sbjct: 632 GVKGITLREGDEVVGLDVAHANSVDE---------------------------------- 657

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            +L V+E G+GKRT   D+R+SNR GKGI+   +++ N  G +V
Sbjct: 658 -----------------VLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERN--GNVV 698

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +  V   + +++V++ G +IR+ V +I    RA +GV +     D+ V +V +++
Sbjct: 699 CITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 754


>gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/938 (38%), Positives = 551/938 (58%), Gaps = 123/938 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            IR A R T GV I    +++ VVS+ +  + E  ++ 
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDE 852


>gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316]
 gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
 gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316]
 gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/843 (42%), Positives = 533/843 (63%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +++    N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   GR + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + IV   +        Y K   A      G   +     N ++  G ++   
Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ +++ G   RT+  +   + RS  G++   +   ++   +V V  V  
Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQ 806

Query: 850 NDQ 852
             +
Sbjct: 807 EIE 809



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  T+    +    +  +       + + L
Sbjct: 330 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHIL-----EGLLVAL 384

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 385 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 435

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 436 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDE 495

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR +  +FR   R G+GI+ T V+  + +  LV+    + +D
Sbjct: 496 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 552

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            ++  ++ G + R+   EI    R  KG   V +    + E + ++   R+ ++
Sbjct: 553 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 606


>gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           agalactiae ATCC 13813]
          Length = 819

 Score =  776 bits (2003), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/843 (42%), Positives = 533/843 (63%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +++    N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   GR + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + IV   +        Y K   A      G   +     N ++  G ++   
Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ +++ G   RT+  +   + RS  G++   +   ++   +V V  V  
Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQ 806

Query: 850 NDQ 852
             +
Sbjct: 807 EIE 809



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  T+    +    +  +       + + L
Sbjct: 330 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHIL-----EGLLVAL 384

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 385 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 435

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 436 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMVGEVLSLEDE 495

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR +  +FR   R G+GI+ T V+  + +  LV+    + +D
Sbjct: 496 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 552

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            ++  ++ G + R+   EI    R  KG   V +    + E + ++   R+ ++
Sbjct: 553 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 606


>gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Haloferax sp
 gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2]
          Length = 858

 Score =  775 bits (2002), Expect = 0.0,   Method: Composition-based stats.
 Identities = 369/918 (40%), Positives = 523/918 (56%), Gaps = 82/918 (8%)

Query: 1   MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M+     S E        + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL
Sbjct: 1   MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M Q GV  N  + K + I GE MG YHPHG++AIYD LARMA+D+S+R  L++GQGNF
Sbjct: 61  YAMHQAGVTSNSSHRKSSSIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGDPPAA RYTE R+   A  LLDD+ KDTVDF+ NYD   QEP VL + +PN+LVN
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGM+TNIP HNLGEVVD  V +I+NPD  +  LME I+GPDFPTGA I+ R  +
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIVARNAV 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRG + +R    + +  G   +IV+ E+PYQ NKA ++E+IA+ V E +I  I 
Sbjct: 241 HKAYKTGRGRVRVRADYDVFEEEG---RIVINELPYQENKARLIERIADDVNEGKIEGIR 297

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDES+R G RVVIELKRGA A+V+ NQL     L+S F V  +AL   +P+  TL   
Sbjct: 298 DIRDESERDGIRVVIELKRGAMAEVVKNQLLD-NHLESTFGVINLALVDGQPQVLTLKET 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R +VV RR++Y L +A DRAH+L G   A+ N+D+VV  IR S + + A+  L
Sbjct: 357 LEHYLDHRRDVVRRRSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAAL 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                   D + L               T   SE Q   I+ ++L  LT +   +I  E 
Sbjct: 417 RGEVEVEVDGEPL--------------PTFDFSEEQANHIVSMQLGSLTSMEAAEIEAEY 462

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +   I+    IL  +S L  +I+ ELL +KDE    RRT  V    ++   D I  ED
Sbjct: 463 EDVQATIERLETILGDQSELDAVIESELLDIKDEYADDRRTSFVANTGEVTRADLIPEED 522

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VV VS   Y+KR+P+S +RAQ RGGKG  G  +++ D V+ +F+ +TH  +L F++ G 
Sbjct: 523 VVVVVSEDDYIKRMPVSRFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQ 582

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K +++P  S  ARGK+ +N+L  + GE IT ++   + E      Y+   T++G +
Sbjct: 583 VYQLKAYQVPEMSRTARGKSAVNLLDFDDGEEITAVVNCDDLEDI--EGYLTMVTRNGYI 640

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     F  I  +G IA KLD  DE++ VE    E D+++ T+ G  +RF    +R   
Sbjct: 641 KRTGTDRFQNILSTGIIATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAM- 699

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRGI L   D V  +A +                                    
Sbjct: 700 GRSARGVRGIKLEGDDVVAGVAAIDE---------------------------------- 725

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                +ILTV+E G+GKRT    +R  +R+GKG+     ++ N 
Sbjct: 726 -----------------AHHSWILTVTENGYGKRTDLDAYRTQSRNGKGLIDIKANERN- 767

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G + A+  V + D ++++SD+G ++R PV +I    R T G+++    + + V SV+ I
Sbjct: 768 -GPVCAINTVGEGDHLVVMSDEGQILRTPVEDISTVGRNTMGIIVMDLDEGDAVASVDVI 826

Query: 898 R-----ESEIVDEAESTE 910
                 E+E +D+A+S E
Sbjct: 827 PAAMTTEAEELDDADSVE 844



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 95/246 (38%), Gaps = 13/246 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D    E  +  V+  GY+KR     ++     G       + + D + D+ +    T ++
Sbjct: 623 DLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTG--IIATKLDEGDELVDVEVTDGETDLV 680

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G   +     +      ARG   +  + L   + +  +    E   SW    ++ 
Sbjct: 681 IGTERGMSIRFDEDEVRAMGRSARG---VRGIKLEGDDVVAGVAAIDEAHHSW----ILT 733

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVR 707
            T++G  +R  L  +   +R+GK  + + + +    V       + + +++ +  GQ +R
Sbjct: 734 VTENGYGKRTDLDAYRTQSRNGKGLIDIKANERNGPVCAINTVGEGDHLVVMSDEGQILR 793

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  I    GRN++G+  + L +GD V S+ ++  A     E +     +       + 
Sbjct: 794 TPVEDISTV-GRNTMGIIVMDLDEGDAVASVDVIPAAMTTEAEELDDADSVEEDAETDAK 852

Query: 768 DTEEIT 773
              +  
Sbjct: 853 ADADDE 858


>gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/843 (41%), Positives = 529/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834


>gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
 gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4]
          Length = 873

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 353/904 (39%), Positives = 523/904 (57%), Gaps = 57/904 (6%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D  +   +  V +++EM++ ++ YA++VI+ RA+PD+RDGLKP  RRILF M ++G+  N
Sbjct: 17  DSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPN 76

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           +K++KCA+I GE MG +HPHG+ AIY  L  MAQ W++R +LI+GQGNFGS++GDPPAA 
Sbjct: 77  RKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAM 136

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL  A   L+ D+ KDTVDF PNYD +  EP V  A +PN++VNG  GIAVGMAT
Sbjct: 137 RYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMAT 196

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL E +DG VA+ID+P +  + L+E I+GPDFPTG VILGR GI N + TGRGS+
Sbjct: 197 NIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVILGREGIVNYFTTGRGSL 256

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG  H+E+  G +  IV+ EIPY VN+A+++EKI ELV +K I +IAD+RDESD    
Sbjct: 257 KVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDE-NT 315

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A V+ N LYR+T LQ+ F+VNMVA++  +P+   L  +L  ++  R EV
Sbjct: 316 RVVIELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLRPKSLNLKELLSCYLDHRHEV 375

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ LNKA +RA VL G  IA++ L E + IIR S N + ARR+L+ R ++   I+
Sbjct: 376 VTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIE 435

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
            L   I      +       LS  Q  AIL+LRL +LTGL R+ I  E   L  +IK+  
Sbjct: 436 SL--GIPLDGQRMTEGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFR 493

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S  ++  I+K ELL +K++   PR+T+I+    ++  ED +  + +V+T++H G++
Sbjct: 494 LILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVITLTHNGFI 553

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE------DFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           KR  L  YR+QRRGG+G  G+  +D       DFV  LF  STH  +LFF++ G VY ++
Sbjct: 554 KRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVYIQR 613

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+ +P     ++GK + +IL L   E I +++             +V  T+  + R +  
Sbjct: 614 VYEIPEKERASKGKNIASILELKPTEEIASMLR------------IVANTQASDGRESS- 660

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                                        +E  I   T  G+  + P+S  R    R   
Sbjct: 661 ---------------------------WDKEGYIFFCTLKGKVKKTPVSEFRNI--RKG- 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G+  IS+ + D++I                       ++  +          +  D    
Sbjct: 691 GITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDVRPMGRNAAGVIGIDLQPG 750

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +      + +     +L VSEKG GKRTS  ++R   R G+G+     S  ++ G +V
Sbjct: 751 DEVVGMSIVDHRA---TLLVVSEKGMGKRTSFEEYRKQKRGGQGVITMKTS--DKTGKVV 805

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               V D+D++++++ KG +IR+ V ++R   R T+GV +     +++V S+ RI   + 
Sbjct: 806 KAITVLDDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTSIARIIPDKE 865

Query: 903 VDEA 906
            +E 
Sbjct: 866 DNEE 869


>gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374]
          Length = 841

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/903 (37%), Positives = 511/903 (56%), Gaps = 88/903 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+E  I  + ++ EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  N 
Sbjct: 9   EEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMYEMGLRANT 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG+A++YDAL R+AQD+SLR  ++  QGNFGS+DGDPPAA R
Sbjct: 69  PFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ +    +L D+ KDTVDF PNYD S QEP VL A +P +L NG  GIAVGMATN
Sbjct: 129 YTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D   AVI+NPDIDL+ LM+ I+GPDFP+GA+I G+ GI +A++TGRG IV
Sbjct: 189 MAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIICGQQGIIDAFSTGRGKIV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            R    IE+     +QI+ T+IPYQVNKA +++KI EL R   +  I+ +RDESDR+G R
Sbjct: 249 QRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDELRRND-LPAISAVRDESDREGIR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+G+   ++LN L+  T LQS F+VN +AL   +P+  +L  IL  ++ +RE+VV
Sbjct: 308 IVVELKKGSVPRIVLNTLFLRTPLQSNFNVNNLALVNGRPQLLSLKEILVHYINYREQVV 367

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L+GL I + N+DEV+RII+ S +   A   L +          
Sbjct: 368 ERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQK---------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+++Q  AI++++L RL+ L  + I  EL  L ++I    D
Sbjct: 418 ----------------AFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEVKIAYYKD 461

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+ R ++LG++ QE   +  +    R T I    +   + ED I  E++VV +S+ G++
Sbjct: 462 LLADRRKILGVVAQETRELAAKYGDKRLTEIQRAEIGQTQVEDFIKNEEVVVVISNKGFI 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV    YR+Q RGG G  G  + ++DFV  L++ STH  V+F SS G  Y  KV  +P 
Sbjct: 522 KRVVAEEYRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWIKVHEIPE 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           GS  ++G ++  ++ +  GE I++I+ F E     ++ Y+   TKHG  ++  L  F   
Sbjct: 582 GSKVSKGSSIKQLIDITDGEEISSIINFTEF---HDDQYLFMVTKHGVTKKVGLPAFRNA 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G  A+ LD  D ++  E  T  +D++  T  G+ +R     +R   GR S GVRG+ 
Sbjct: 639 KSRGVRALFLDEGDIMVQSELMTDGDDMMFVTAGGRGLRIAGGDVRAM-GRASRGVRGMK 697

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D VI +  V                                               
Sbjct: 698 LLGDDTVIGLLKV----------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    + IL ++EKG GK+ +  +F    R  +G     + +  +   LV    VN
Sbjct: 711 ------DDSRRILMITEKGQGKQVNFSNFNRHGRGTQGQLIYRIKE--KTSYLVNALAVN 762

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIVDEAE 907
           D + +++++ +G  IR+ VN I    R   GV + +     + +V++     S   ++  
Sbjct: 763 DENDVVVITMQGQTIRIHVNLISTQGRNASGVRVVALKNPKDSIVALAVTDYSRDEEDGV 822

Query: 908 STE 910
             +
Sbjct: 823 GED 825


>gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
 gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989]
          Length = 818

 Score =  775 bits (2000), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/850 (40%), Positives = 533/850 (62%), Gaps = 32/850 (3%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +++   + I    I  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM  +G+
Sbjct: 1   MDNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K + K AR  GEVM KYHPHG+++IYDA+ RMAQD+S+R +L++G GNFGS++GD  
Sbjct: 61  TPDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+   A  +L D+ K TVDF PN+D   +EP VL +R+P +LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT+IP HNLGEV+D  V +ID+ +  ++ L +II+GPDFPTGA ILGR GI+  Y TG+
Sbjct: 181 MATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKILGRAGIREGYLTGQ 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I IR    IE+T   +EQ+VV+EIPYQVNK  ++EKI ELV+EK I  I+++RDE+++
Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A+A ++LN+LY++TSLQ   S+ M+AL   +P++ TL+ IL  ++  +
Sbjct: 301 EGIRIVIELKRDANASIVLNKLYKHTSLQESMSMIMIALVNGEPKKLTLLQILNEYIKHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +E+V RRT++ L KA +RAH+L GL IA+ N+DE+++IIR S +    +           
Sbjct: 361 KEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYDDAKQK----------- 409

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               T  LSEVQT+AIL+++LARL GL R+ I NE + L  +I 
Sbjct: 410 -----------------LMDTFSLSEVQTQAILDMKLARLQGLEREKIENEYSELQKKIS 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +ILS+   L+ +IK+ELL +K++    RRT+IV+   ++E+ED I R+++ +T++H 
Sbjct: 453 YYKEILSNEGLLMNVIKEELLEIKEKYADERRTQIVDDDTNIEEEDLIERKNVTITLTHK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY KR+ +  Y+ Q+RGGKG +G+  R+ DFV ++   STH  +LFF++ G  +K K ++
Sbjct: 513 GYAKRMDVDEYKTQKRGGKGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQ 572

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  +  A+G  +IN ++L++ E IT ++P  E      + Y++  T  G +++ KLS+F
Sbjct: 573 IPEATRTAKGIPIINFVNLDKTEEITAVIPIDEFR---EDKYLIAVTSQGLIKKVKLSEF 629

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               +SG IA+KL   D+++++E    ++D+L+ T+ G  +RF  + +R   GR S+GV+
Sbjct: 630 ESNRKSGLIAVKLHDGDKLIAIEKTNGDDDVLIVTRKGMSIRFNENDVRA-TGRQSIGVK 688

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I+L   D++ISM +V                 +   +          +   D+      
Sbjct: 689 AITLKGDDEIISMQLVSKGKELLVVSKKGYGKRTGTDKYTLQTRGGKGNKTYDNKKFDVT 748

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E     +  +E  I+ ++  G   R  + +    +R+ KG+R   V +   I +L  V 
Sbjct: 749 GELTGALIVDEEDDIMLINSDGIVIRIKAKEIPNLSRATKGVRIMKVGEDANIISLAKVM 808

Query: 846 PVNDNDQIIL 855
              D++Q+ L
Sbjct: 809 NEEDSEQLTL 818


>gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208]
 gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23]
 gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071]
 gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99]
          Length = 842

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  NP+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +             +   +    +   +       + +      
Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIETVSQTGRSAMGVKLIRLDEDEKVATVAKV 806



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610

Query: 906 A 906
           +
Sbjct: 611 S 611


>gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
 gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Kordia algicida OT-1]
          Length = 849

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/844 (40%), Positives = 521/844 (61%), Gaps = 32/844 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDG+KPVHRR+LFGM ++GV  +  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR +L++GQGNFGS+DGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ KDTVD   N+D + +EP VL  R P +L+NG  GIAVGMATN+P
Sbjct: 123 EARMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A IDN DI++D L++ ++ PDFPTG +I G  G++ A+ TGRG IV+R
Sbjct: 183 PHNLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIYGYDGVREAFKTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E+    RE I+VTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR+G R+V
Sbjct: 243 GKAVMEEVQ-GRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+LY+YT+LQS FSVN +AL   +P+   L  ++  FV  R EVV R
Sbjct: 302 YILKRDAIPNIVLNKLYKYTALQSSFSVNNIALVHGRPQLLNLKDMIHYFVEHRHEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA +RAH+L GL IA  N+DEV+ IIR S N E AR  L++R           
Sbjct: 362 RTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q +AI+E+RL +LTGL +D +R E + +   I++  DIL
Sbjct: 411 ---------------FELTEIQAKAIVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +++SR + IIK+EL  +KD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 ANKSRRMNIIKEELEVIKDKYGDERRSMIEYAGGDVSIEDLIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+ G   R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLTEYKRQNRGGVGQKGSATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ + +++   +      DE   NN YV+ ATK G V++  L  + +  
Sbjct: 576 TSKGRAIQNLINIEKDDKVKAFICTQNLKDEEYINNHYVIMATKKGQVKKTPLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T  + ++L  K G+ +RF     R   GRN+ GVRGI L
Sbjct: 636 TNGINAITIKDGDELLEAKLTTGNSQVMLAVKSGKAIRFEEEKTRPM-GRNASGVRGIRL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   +++            +              +K  S  E      
Sbjct: 695 ADDNDEVVGMVAVNDMESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLV 754

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             + +  ++  ++ +++ G   R +  D R+  R+ +G+R  ++   + I A+  V    
Sbjct: 755 AIKNVTDEDG-LMIINKSGIAIRMAVADLRVMGRATQGVRLINIKGKDSIAAVAKVRNEQ 813

Query: 849 DNDQ 852
             ++
Sbjct: 814 QEEE 817



 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 101/254 (39%), Gaps = 13/254 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           +  +    V+  +  G VK+ PL  Y   R  G   + + ++D D + +  + + ++ V+
Sbjct: 606 EEYINNHYVIMATKKGQVKKTPLEQYSRPRTNG--INAITIKDGDELLEAKLTTGNSQVM 663

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                G   +   +      P  R  + +  + L         M    D  S     ++ 
Sbjct: 664 LAVKSGKAIR---FEEEKTRPMGRNASGVRGIRLADDNDEVVGMVAVNDMESN----ILV 716

Query: 651 ATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVR 707
            +++G  +R+ L D+        G   + +  +  ++++++  T E+ +++  K G  +R
Sbjct: 717 VSENGYGKRSSLEDYRITNRGGKGVKTISVTEKTGQLVAIKNVTDEDGLMIINKSGIAIR 776

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ +RV  GR + GVR I++   D + ++A V +   + +         + ++     
Sbjct: 777 MAVADLRVM-GRATQGVRLINIKGKDSIAAVAKVRNEQQEEEAIEGAENLENTEQTENGT 835

Query: 768 DTEEITSLKNDSSV 781
             +      + +  
Sbjct: 836 AVDMNNEGDSKTEE 849


>gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168]
          Length = 817

 Score =  774 bits (1999), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/896 (37%), Positives = 512/896 (57%), Gaps = 86/896 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E   +  VSI  EM+ +Y+ Y+++VI+ RA+PD+RDG+KPVHRRIL+ M + G+ ++ 
Sbjct: 6   TPEGGTLIPVSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           K  KCA + G+V+G+YHPHG+A++YDA+ R+ Q +S+R + I+ QGNFG +DG P AA R
Sbjct: 66  KTRKCATVVGDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++   A  ++ D+ K+TVDF PN+D + QEP VL A++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMSTVAEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+     A IDNPD+ L+ L  I++GPDFPTG +I GR GIK AY TGRG I+
Sbjct: 186 MPPHNLREICSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIFGRRGIKQAYKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IRG  +IE     RE I+ TEIPYQV    + ++I EL R+K I  I  + D S     R
Sbjct: 246 IRGRFNIEVDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELKRGA A V+LNQL+  T+LQS F V  +AL   +PE  TL  +++ FV  R+EVV
Sbjct: 306 IVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALVKGRPEILTLKDLIRYFVEHRQEVV 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y L KA +RAH+L  L +A+ N+DEV+RIIR S + +TA+  LM+R         
Sbjct: 366 TRRTRYDLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMER--------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                                +VQ +AI++++L RLT L  +D+R EL  L   I    D
Sbjct: 417 -----------------FEFDDVQAQAIVDMQLKRLTNLEIEDLRRELAELETLIVHLKD 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+   ++L +IK+E  S++++    RRT IV + +  +  ED I  E+MV+ +S+LGY+
Sbjct: 460 LLAHPEKILALIKEETESLREKYGDDRRTDIVADEVEQINIEDLIKEEEMVILISNLGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL+ Y+AQ RGGKG +   + ++DF+  +FI STH  ++F ++ G  Y  KV  +P 
Sbjct: 520 KRIPLTAYKAQGRGGKGSNSAKLVEDDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               +RG  +  +L+++  E ITT++   E     +  Y+  AT  G V++ + S F   
Sbjct: 580 AGRNSRGAHIKGLLTVSPNEEITTVVSLKEFS---DEQYLFMATAAGVVKKVQTSQFSNA 636

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G IA++LD  D++++       ++++L ++ GQ +R   +++R   GR   GV G+ 
Sbjct: 637 KTRGIIAIRLDEGDKLVTAILSGGTDELILISRRGQALRITETSVRPM-GRAGRGVGGLK 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA+GD++     V                                               
Sbjct: 696 LAQGDELAGALRVES--------------------------------------------- 710

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  ++ ++EKGFGKR    +F    R   G R   VS  ++ G +V      
Sbjct: 711 --------DACMMLLTEKGFGKRVDFDEFAAHGRGTGGQRIYGVS--DKTGEIVGTINAA 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D+D+I+ ++ +G  +RV  N +    R+  GV +F+    + V+ ++R+   +  D
Sbjct: 761 DSDEIVCITSQGKSLRVAANSVTKQGRSASGVRVFNIDPPDMVIGLDRVANEDKED 816


>gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R]
 gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909]
 gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
 gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R]
 gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909]
 gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 357/843 (42%), Positives = 533/843 (63%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL
Sbjct: 411 ---------------FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE I TI+   +++    N Y  F T+ G V+R  +S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   GR + GVRG++L 
Sbjct: 634 NGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + IV   +        Y K   A      G   +     N ++  G ++   
Sbjct: 693 EGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTANITAKNGPLAR-- 750

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ +++ G   RT+  +   + RS  G++   +   ++   +V V  V  
Sbjct: 751 -LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQ 806

Query: 850 NDQ 852
             +
Sbjct: 807 EIE 809



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  T+    +    +  +       + + L
Sbjct: 330 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAGARAHIL-----EGLLVAL 384

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 385 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 435

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 436 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDE 495

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR +  +FR   R G+GI+ T V+  + +  LV+    + +D
Sbjct: 496 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 552

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            ++  ++ G + R+   EI    R  KG   V +    + E + ++   R+ ++
Sbjct: 553 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 606


>gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 852

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 358/938 (38%), Positives = 551/938 (58%), Gaps = 123/938 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++D+ D+ L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            IR A R T GV I    +++ VVS+ +  + E  ++ 
Sbjct: 816 SIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDE 852


>gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
 gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA]
          Length = 861

 Score =  774 bits (1998), Expect = 0.0,   Method: Composition-based stats.
 Identities = 379/861 (44%), Positives = 540/861 (62%), Gaps = 21/861 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++  +S    E     V+I  EM+NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSKYTENSTN-FESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  DVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL KDTVDF  NYDGS  EP VL AR PN+L NG  
Sbjct: 120 DGDSAAAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++ C+  I+N DI +D L+EI+ GPDFPT  +I G +GI+ A
Sbjct: 180 GIAVGMATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGIINGTSGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R VSHIE    ++  I+VTE+PYQVNKA ++ KIAELV++KRI  I  LR
Sbjct: 240 YETGKGKIYLRCVSHIE--GEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLR 297

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESD+ G  +VIEL+RG   +VILN LY+ T +Q++F +NMVA++   P+  TL  IL+A
Sbjct: 298 DESDKDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKGIPKLMTLKDILEA 357

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R +VV RR+ + LNKAR+R H+L GL++A+ N+D +V +I+ +P+   AR  L+ +
Sbjct: 358 FIAHRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAK 417

Query: 421 SWNASDIKDLIDLIDDSSYTIG---------SDGTMYLSEVQTRAILELRLARLTGLGRD 471
           +W +S I +L+   D + +              G   LS+ Q +AIL+L+L RLTG  +D
Sbjct: 418 TWRSSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKD 477

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I +E N L   IK  LDIL +  RL+ +I +EL+ ++      R T+I+E  +D+  ED
Sbjct: 478 KIFDEFNELLERIKYLLDILQTPERLMQVICEELIDIQSNYGNARMTQILEHNIDLTLED 537

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E+ VVT+SH GYVK   LS Y+AQ RGGKG+S   ++DEDFV  LFI ++H  VL 
Sbjct: 538 LIAQEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIANSHDIVLC 597

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FSS G VY  KV+ LP+ S  +RGK +IN+L L + E I  I+P  + +    N +V  A
Sbjct: 598 FSSFGKVYWLKVYDLPMASRISRGKPIINLLPLEKKEIINAILPILKFD---ENHFVFMA 654

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  G  ++  L++F +  + G IA++L + D+++ VE  + E+DI+L +  G+ +RF  S
Sbjct: 655 TSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKSIRFKES 714

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   GR ++GVRGI L  GD+V+S+ +                  +            
Sbjct: 715 DVR-IVGRTAIGVRGIKLVDGDKVVSLIVTNQDSPVLTATEKGFGKRTHLNEYRVQSRGG 773

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
              +   +S          Q     E  +  +S KG   R  + D  I  R+ +G+   +
Sbjct: 774 SGVISIKTSDRNGKIIGAIQVTNEDEMML--ISNKGILVRARAADVSIIGRNTQGVILIN 831

Query: 832 VSKINEIGALVAVFPVNDNDQ 852
           +SK  +   LV++  V + + 
Sbjct: 832 ISKDEK---LVSIAKVVETED 849



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 15/224 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 V   +  G  K+  L+ +   R+GG     + +R+ D +  + I S    ++ F
Sbjct: 645 FDENHFVFMATSSGTCKKTALTNFSKPRKGG--IIAIELRNNDQLIGVEITSGEHDIMLF 702

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G   + K   + I    A G   I ++  ++               +  +  V+ AT
Sbjct: 703 SANGKSIRFKESDVRIVGRTAIGVRGIKLVDGDK---------VVSLIVTNQDSPVLTAT 753

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R  L+++   +R G   + + + D   +I+     T E++++L +  G  VR  
Sbjct: 754 EKGFGKRTHLNEYRVQSRGGSGVISIKTSDRNGKIIGAIQVTNEDEMMLISNKGILVRAR 813

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            + +    GRN+ GV  I+++K ++++S+A V+  + D  E   
Sbjct: 814 AADV-SIIGRNTQGVILINISKDEKLVSIAKVVETEDDKSESKS 856


>gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD]
          Length = 877

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/891 (36%), Positives = 519/891 (58%), Gaps = 85/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I    I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  + 
Sbjct: 67  ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR  LI+G GNFGS+DGD  AA R
Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G  GIAVGMAT 
Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  NPDI +  L + +  PDFPTGA ILG +GI+ AY TGRG+ V
Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  + +I+V EIPY+V K  ++EK+ +LVR+K+I  + D+RDE++R+G R
Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV ++K+G S ++ILNQLY+ T LQ  +++NM+AL    P+   L  IL  ++  +EEVV
Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  ++ L KA++R ++L+G+ IAV N+DEV++IIR S +   A+  L QR         
Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLT L  + +  E+  L  EI+    
Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           I++S  +L+ +I      + +     RRT IV   +  + DED I  + +V+T++   Y+
Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR Q RGG G S      +D + ++ + STH+ +L  +S   +++ +  ++P 
Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN++ + + E I +++   ++    +NLY+V  +K G +++  LS + +I
Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIVSLL-VTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRI 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +++G IA+ L   DE+L+    T+E++I++    G+ VRF     R  + R S+GV+GI+
Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + + V+  +                                                 
Sbjct: 759 LGENEVVVGAS------------------------------------------------- 769

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +   +  + ++G+GK+T   ++R + R GKG+         + G L  +  V 
Sbjct: 770 ----STDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKT---EKAGNLAFISCVK 822

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +++I++++ +G +IR  + +    SR TKGV + +    + + SV  + +
Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEK 873



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 105/273 (38%), Gaps = 9/273 (3%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
             +++       V+  TK+  ++R  L ++   NR  +G         D + ++   +  
Sbjct: 559 IVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTH 618

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDE 750
           +D+L+ T   +  R     I   + + + GV  I+L    K + ++S+ +      D + 
Sbjct: 619 SDLLILTSKARIFRLRTHQIPDLS-KQAKGVPFINLIPIEKDEDIVSLLVTQENYEDDNL 677

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +  +  +   ++      + I+     +       E     +  +E  I+  +  G   
Sbjct: 678 YLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSV 737

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R  + DFR  +R   G++   + +      +V     +    + ++  +G   +  ++E 
Sbjct: 738 RFDNQDFRSLSRKSMGVKGITLGENEV---VVGASSTDQGSTVFVLGQEGYGKKTHIDEY 794

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R  +R  KGV+   T K   +  +  ++  E +
Sbjct: 795 RKTARGGKGVITLKTEKAGNLAFISCVKGDEEI 827


>gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 841

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/836 (41%), Positives = 513/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDNYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI M ++   +             +   +    +   +       + +      
Sbjct: 693 LREGDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806



 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 99/240 (41%), Gaps = 24/240 (10%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610


>gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 877

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/891 (36%), Positives = 519/891 (58%), Gaps = 85/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   I    I++E++ S+L YA++VI+ RA+PD+RDGLKPVHRRIL  M ++G+  + 
Sbjct: 67  ESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELGITHSV 126

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++YD++ RM+QD++LR  LI+G GNFGS+DGD  AA R
Sbjct: 127 AYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDEAAAMR 186

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +++D+ K+TVDF PNYDGS QEP VL AR+PN+LV+G  GIAVGMAT 
Sbjct: 187 YTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAVGMATK 246

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  + +  NPDI +  L + +  PDFPTGA ILG +GI+ AY TGRG+ V
Sbjct: 247 IPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGTSGIRQAYETGRGAFV 306

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE  S  + +I+V EIPY+V K  ++EK+ +LVR+K+I  + D+RDE++R+G R
Sbjct: 307 LRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDETNRKGIR 366

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV ++K+G S ++ILNQLY+ T LQ  +++NM+AL    P+   L  IL  ++  +EEVV
Sbjct: 367 VVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNGIPKVLNLKDILYQYLLHQEEVV 426

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  ++ L KA++R ++L+G+ IAV N+DEV++IIR S +   A+  L QR         
Sbjct: 427 TRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQR--------- 477

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLT L  + +  E+  L  EI+    
Sbjct: 478 -----------------FDLNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITS 520

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           I++S  +L+ +I      + +     RRT IV   +  + DED I  + +V+T++   Y+
Sbjct: 521 IINSHDKLIELIVNNHKKIIESYADDRRTEIVHGSIGQIVDEDLIKEQKVVLTLTKNNYI 580

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  YR Q RGG G S      +D + ++ + STH+ +L  +S   +++ +  ++P 
Sbjct: 581 KRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTHSDLLILTSKARIFRLRTHQIPD 640

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G   IN++ + + E I +++   ++    +NLY+V  +K G +++  LS + +I
Sbjct: 641 LSKQAKGVPFINLIPIEKDEDIISLL-VTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRI 699

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +++G IA+ L   DE+L+    T+E++I++    G+ VRF     R  + R S+GV+GI+
Sbjct: 700 SKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSVRFDNQDFRSLS-RKSMGVKGIT 758

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + + V+  +                                                 
Sbjct: 759 LGENEVVVGAS------------------------------------------------- 769

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +   +  + ++G+GK+T   ++R + R GKG+         + G L  +  V 
Sbjct: 770 ----STDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKT---EKAGNLAFISCVK 822

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +++I++++ +G +IR  + +    SR TKGV + +    + + SV  + +
Sbjct: 823 GDEEILILTKQGIVIRTSLEQCNDVSRNTKGVKLITLKPKDSIQSVAVLEK 873



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 105/273 (38%), Gaps = 9/273 (3%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
             +++       V+  TK+  ++R  L ++   NR  +G         D + ++   +  
Sbjct: 559 IVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQNRGGTGSSTATTYKDDNLKNILVASTH 618

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDE 750
           +D+L+ T   +  R     I   + + + GV  I+L    K + +IS+ +      D + 
Sbjct: 619 SDLLILTSKARIFRLRTHQIPDLS-KQAKGVPFINLIPIEKDEDIISLLVTQENYEDDNL 677

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +  +  +   ++      + I+     +       E     +  +E  I+  +  G   
Sbjct: 678 YLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKENDELLTAFITTEESEIIIGASNGRSV 737

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R  + DFR  +R   G++   + +      +V     +    + ++  +G   +  ++E 
Sbjct: 738 RFDNQDFRSLSRKSMGVKGITLGENEV---VVGASSTDQGSTVFVLGQEGYGKKTHIDEY 794

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R  +R  KGV+   T K   +  +  ++  E +
Sbjct: 795 RKTARGGKGVITLKTEKAGNLAFISCVKGDEEI 827


>gi|170780470|ref|YP_001708802.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
 gi|169155038|emb|CAQ00134.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 886

 Score =  773 bits (1997), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/895 (37%), Positives = 496/895 (55%), Gaps = 94/895 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  V +  EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M   G   ++ + 
Sbjct: 53  HDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFF 112

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMG++HPHG+++IYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE
Sbjct: 113 KSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTE 172

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF+ NYDG   EP +L +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 173 TKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPP 232

Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G   ++ +PD +    L+AL+E I+GPDFPTGA +LG  GI  AY TGRGSI
Sbjct: 233 HNLREVAAGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSI 292

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
            +R V  +E+    R  +VVTE+PYQVN   +  KIAELV++ ++  +AD+RDE S R G
Sbjct: 293 TMRAVVAVEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGKLAGVADIRDETSGRTG 351

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + +
Sbjct: 352 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQID 411

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT+Y LN+A  RAH+L G   A+  LD+V+ +IR S   E AR  LM+        
Sbjct: 412 VIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK-------- 463

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + E+Q  AILE++L RL  L R  I+++   L   I E 
Sbjct: 464 ------------------LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEY 505

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
             IL++ +    II  EL  + D+    RRT I+     DM  ED I  E+MVVTV+  G
Sbjct: 506 KHILATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGG 565

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YR+Q RGGKG  G  +R +D V   F+ +TH  +LF +  G VY+ K + L
Sbjct: 566 YIKRTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYEL 625

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 A+G+ + N+L++   E I  ++   + +      Y+V AT+ G +++  L+++ 
Sbjct: 626 QEAGRDAKGQHVANLLAMQPDEEIQQVLDIRDYQV---AQYLVLATRDGLMKKTALTEYD 682

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724
                G IA+ L   D ++S     +++D+LL ++ G  +RF      +R   GR++ GV
Sbjct: 683 TNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGV 741

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +G++    D ++S ++V                                           
Sbjct: 742 KGMTFRGDDTLLSASVV------------------------------------------- 758

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      ++ ++  V+E GF KRT++  +R+ NR G GI+   +   +  G L   
Sbjct: 759 ----------GEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKL--QDARGDLAGA 806

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V + D+I++V   G ++R  V E+    R T GVV    A D+R++S+ +  E
Sbjct: 807 LIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSE 861


>gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
 gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC
           29176]
          Length = 841

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/853 (39%), Positives = 514/853 (60%), Gaps = 40/853 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +ID+      +  ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R +++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL G +P+   L+ +L  ++ 
Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVGNQPKVMNLLEMLNYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E+VV RRTKY LNKA++RAH+L GL IA+ N+DEV++IIR S N + A++EL++R   
Sbjct: 362 HQEDVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQ +AI+++RL  LTGL R+ I  E   L  +
Sbjct: 419 -----------------------FGLSEVQAQAIVDMRLRALTGLEREKIEAEYAELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+ +  LLG+IK+E+L + ++    RRTRI     D+  ED I RE++V+T++
Sbjct: 456 IEEFKAILADKKLLLGVIKKEILVISEKYGDDRRTRIGYDEFDISMEDLIPRENVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +++Q RGGKG  G+   ++D++ +LF+ ++H  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTMDTFKSQNRGGKGIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT I+P  E E      Y+  AT+ G V++  + 
Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPLREYE---EGKYLFMATEKGLVKKTPIQ 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   D ++ V+      DILL T+ G C+RF  + +R   GR S+G
Sbjct: 633 DYANVRKTGLAAIALREDDRLIEVKVTDNTEDILLVTRDGMCIRFNETDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L   D VI M                M   +                     +  
Sbjct: 692 VRGMNLTDNDVVIGMQTASQGTDLLIVSEKGMGKRTNM--DEFTRQNRGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +   ++  I+ ++ +G   R    D  +  R   G++  ++ + +++ ++  
Sbjct: 750 KTGNVVGMKAVDEDSEIMIINTEGIIIRMKCSDISVYGRITSGVKLINLKEKDKVASVAK 809

Query: 844 VFPVN---DNDQI 853
           V   +   D +Q+
Sbjct: 810 VRKASAEIDGEQV 822


>gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b F2365]
 gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459]
 gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858]
 gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP
           80459]
 gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262]
 gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017]
 gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816]
 gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220]
          Length = 842

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +             +   +    +   +       + +      
Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610

Query: 906 A 906
           +
Sbjct: 611 S 611


>gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988]
 gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561]
 gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S]
 gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161]
 gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818]
 gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003]
 gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e]
 gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes]
 gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854]
 gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165]
 gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900]
 gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578]
 gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923]
 gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818]
          Length = 842

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +             +   +    +   +       + +      
Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610

Query: 906 A 906
           +
Sbjct: 611 S 611


>gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 842

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/836 (41%), Positives = 512/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEANIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD+VI M ++   +             +   +    +   +       + +      
Sbjct: 693 LREGDEVIGMEVLEDNEKVLIVTEKGYGKQTPAAQYPLRNRGGMGVKTVTITEKNGNLVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDENEKVATVAKV 806



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610

Query: 906 A 906
           +
Sbjct: 611 S 611


>gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 834

 Score =  773 bits (1996), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/843 (41%), Positives = 530/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEAIEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            ++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 IEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A   +   + EE
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDMTPNNDEE 834


>gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662]
 gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 828

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/832 (39%), Positives = 510/832 (61%), Gaps = 37/832 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            +      +  V +   M+NSY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    
Sbjct: 2   DENTIFDKVHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA
Sbjct: 62  DKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL D+GKDTV+F PN+D + +EP VL +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVI-----DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL EV++  V +I      N   D++ L++I++GPDFPTGA ILG+ GI  AY 
Sbjct: 182 TNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATILGKAGISQAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V+ IE  +  +++IVVTE+PY VNKA +++KIAELV++K++  I ++RDE
Sbjct: 242 TGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+ IEL+R A+A+V+LN+L+++T +Q  F V M++L   +P+   L  +L  ++
Sbjct: 302 SDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSLVNNEPKILNLFDMLNYYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +++VV RRTKY LNKA +RAH+L GL IA  N+DEV++IIR + N   A+ +LM+R  
Sbjct: 362 EHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLMER-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L++ Q +AI+++RL  L GL R  +  E N L  
Sbjct: 420 ------------------------FALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMA 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E   IL+    LLG+IK EL+ ++D+    RRT I   + D+  ED I RE+ ++T+
Sbjct: 456 KITELKAILADEKLLLGVIKDELVLIRDKYGDERRTSIGFDVDDISMEDLIPRENTIITM 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + LGY+KR+ +  +++Q RGGKG  G+   DED++ +LF+ ++H  ++FF+++G VY+ K
Sbjct: 516 TKLGYIKRMTVDTFKSQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG A++N++ L   E+IT ++P  E +    + Y+  ATK G V+++ +
Sbjct: 576 AYEIPESSRTARGTAIVNLIQLQPEEKITAVIPINEYK---EDHYLFMATKSGVVKKSPI 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            ++  I ++G +A+ L   DE++ V+    + D+ L TK GQC+RF  + +R   GR ++
Sbjct: 633 MEYANIRKTGLLAITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSI-GRTAM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI+L   D+VI M +    +A        M   +A                    + 
Sbjct: 692 GVRGINLDGDDEVIGMQLNSQGEALLFVSENGMGKRTAMTEFTPQH--RGGKGIRCYKIT 749

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +    +   +E  ++ ++ +G   R       +  R+  G++  ++  
Sbjct: 750 EKTGDVVGVKAVDEENEVMMITTEGVVIRMGVDGISMLGRNTSGVKLMNLDD 801


>gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262]
 gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262]
          Length = 842

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/836 (41%), Positives = 510/836 (61%), Gaps = 33/836 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 577 YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 633

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 634 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +             +   +    +   +       + +      
Sbjct: 693 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 752

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 753 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 806



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 610

Query: 906 A 906
           +
Sbjct: 611 S 611


>gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  773 bits (1995), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/843 (41%), Positives = 528/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D +++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.4 bits (225), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANPRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDLLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A       + +E
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNNDKE 834


>gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM
           10507]
          Length = 834

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/852 (39%), Positives = 524/852 (61%), Gaps = 38/852 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EDNIFDKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ K+TVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+DG V +IDN      D  L+ ++++I+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGTHGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +I+VTE+PY VNKA ++EKIAELVR+K++  I DL D S
Sbjct: 242 GRGKIRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ I+LK+ A+A+V+LNQLY++T LQ  F V M+AL   +P+   L+ +LK ++A
Sbjct: 302 NREGMRICIDLKKDANANVVLNQLYKHTQLQDTFGVIMLALINNQPKIMNLLEMLKHYLA 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA++RAH+L GL  A+ N+DEV+RIIR +  P+TA+ +LM+R   
Sbjct: 362 HQEEVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+EVQ +AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FGLTEVQAQAIIDMRLRALTGLEREKLEAEYAELMEK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I++   IL+ R+ LL ++++E+L + ++    RRT+I     D+  ED I +++ V+T++
Sbjct: 456 IRKYKAILADRNLLLRVVREEILLISEKYGDDRRTQIGFDEFDISMEDLIPKQNTVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGGKG  G+   + D++ +L + +TH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L  GE+IT ++P  + E      Y++  TK G V+R  + 
Sbjct: 576 YEIPEAGRTARGTAIINLLQLAPGEKITAVIPLNKFE---EGKYLMMVTKKGLVKRTPIL 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    +  I+L TK G C+RF  + +R   GR S+G
Sbjct: 633 DYEHVRKTGLAAIVLRDEDELIEVKYTDNKKHIILVTKEGMCIRFKENDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D+V+ M +    D         M   ++       +            +  
Sbjct: 692 VRGMNLSDSDEVVGMQLDTQGDCLLFVSEKGMGKRTSISEFTCQN--RGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +   +E  ++ ++ +G   R    D  +  R   G++  ++ +  ++ ++  
Sbjct: 750 KTGNVIGVKAVNEENEVMMITTEGIIIRLQCSDISMLGRITSGVKLINLDEGVKVASVAK 809

Query: 844 VFP-VNDNDQII 854
           V   V ++ Q++
Sbjct: 810 VREKVEESAQVL 821


>gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy]
 gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy]
          Length = 855

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 355/906 (39%), Positives = 516/906 (56%), Gaps = 90/906 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E  E    SV +++EM+ SYL YA++VI+ RA+PD+RDGLKPVHRRILF M +MG+  N
Sbjct: 2   EEVNESRTISVDVSNEMRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRAN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             + KCARI G+V+GKYHPHG+A++YDAL R+AQD+SLR  ++  QGNFGS+DGDP AA 
Sbjct: 62  TSFKKCARIVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ +    +L D+ K+TV+F PNYD S QEP VL A +P +L NG  GIAVGMAT
Sbjct: 122 RYTEAKMSRIGEEMLQDIQKETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HNL E+ D   AVIDNPDI +D LME I+GPDFP+G +I G  GIK+A+ TGRG I
Sbjct: 182 NMAPHNLQEICDAISAVIDNPDITIDELMEHIKGPDFPSGGIICGLQGIKDAFMTGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R V  IE +  D +QIV TEIPYQVNKA +++KI +L ++  I  I+ +RDESDR+G 
Sbjct: 242 VVRSVYEIETSERDHDQIVFTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK GA   V+LNQL+  T+LQS F+VN +AL   +P+  TL  +L  ++  REEV
Sbjct: 302 RIVVELKVGAEPMVVLNQLFARTALQSNFNVNNLALVQGRPQMLTLKDMLVYYIRHREEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT++ L KA++RAH+L GL I + N+DEV++II+ S +   A   L+ R        
Sbjct: 362 VTRRTQFDLRKAQERAHILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSR-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L ++Q +AI++++L RL+ L    I  EL  L  +I    
Sbjct: 414 ------------------FGLDQIQAQAIIDMKLGRLSHLETSKILEELADLEQKIAYYQ 455

Query: 489 DILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMED-EDCIVREDMVVTVSHL 545
           ++LS   ++L +++ E+ ++   L     R T+I    L     ED I  E +VV +S+ 
Sbjct: 456 EVLSDEGKILKLVQSEVRALPSSLVPKDRRLTKIAREELGQSTLEDFIKDEQVVVLISNK 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+ KR+    Y A  R GKG     ++D DFV  +F+  TH  V+F ++ G  Y  KV+ 
Sbjct: 516 GFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVAFTHEYVMFVTNAGKAYYTKVFE 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  A+G ++ NIL L   E+IT+I+ F E      + Y++ AT+ G V++  L++F
Sbjct: 576 IPEASKTAKGTSIKNILQLETTEKITSIISFKEFS---EDHYLMMATRDGVVKKVSLNNF 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +     G  A+ LD  DE+LS +   + ++++L TKLG+ +RF    +R   GR S GVR
Sbjct: 633 VNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGLRFRQDNVRAM-GRASRGVR 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L   DQV  +  V                                            
Sbjct: 692 GIRLLANDQVAGLLKVDST----------------------------------------- 710

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                       + IL ++E G GK+ +   F +  R  +G +   +    +   +V V 
Sbjct: 711 ------------KRILMITENGQGKQVNFDSFTVHGRGTQGQKIYRL--GGKASFIVGVL 756

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVERIRESEIVD 904
            V+D + ++  +  G  +RV VN I I  R   GV + S     + +V++    E +  +
Sbjct: 757 SVDDENDVVCATLMGQTLRVHVNAISIQGRNAAGVKVVSMKFAGDSIVAIAS-TERDDEE 815

Query: 905 EAESTE 910
           E E  E
Sbjct: 816 EVEIPE 821


>gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 834

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 352/843 (41%), Positives = 527/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY A+  MAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V++NPD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV+ R
Sbjct: 302 IEIRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  NKA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLERDKIQSEYDELLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGVVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   D++++V     ++DI++ T+ G  VRF  ++IR   GR++ GVRG+SL 
Sbjct: 634 NGLRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFNEASIRNM-GRSATGVRGVSLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D+V+  + I  H +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EDDRVVGASRINDHQEVLVITENGYGKRTEATEYPTKGRGGKGIKTANITPKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V  
Sbjct: 750 GLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKVMKL---DADAKIVTFALVQA 806

Query: 850 NDQ 852
           +D+
Sbjct: 807 DDE 809



 Score = 91.4 bits (225), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 100/236 (42%), Gaps = 22/236 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   ++ +   +  +     RF +S       R S  +  + L      
Sbjct: 382 IALDHLDEVIAIIRNSETD---VIAQAELMSRFNLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      + ++  +  +     +  + +    + G +   
Sbjct: 433 ERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYANSRRTELMIGEVLSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  + +  LV+    +
Sbjct: 493 EDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESE 901
            +D ++  ++ G + R+   EI    R  KG   V +      E + ++   R+ E
Sbjct: 550 THDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEE 605



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 88/233 (37%), Gaps = 17/233 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + +    ++  +  G+  +  
Sbjct: 615 TKQGVVKRTEVSEFNNIRQNG--LRALNLKEGDQLINVLLTNGQDDIIIGTQSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +++   ++                 ++  V+  T++G  +R + 
Sbjct: 673 EASIRNMGRSATGVRGVSLREDDR---------VVGASRINDHQEVLVITENGYGKRTEA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +++              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TEYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           R ++GV+ + L    ++++ A+V   D +          + A         +E
Sbjct: 782 RATLGVKVMKLDADAKIVTFALVQADDEEETIGEVEQSQIPAATDTTPNSDKE 834


>gi|148271185|ref|YP_001220746.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829115|emb|CAN00012.1| DNA gyrase subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 895

 Score =  772 bits (1994), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/895 (37%), Positives = 496/895 (55%), Gaps = 94/895 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  V +  EMQ S+L YA++VI+ RA+P++RDGLKPVHRR+++ M   G   ++ + 
Sbjct: 62  HDRIEQVDLQLEMQRSFLDYAMSVIVQRALPEVRDGLKPVHRRVIYAMYDGGYRPDRSFF 121

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEVMG++HPHG+++IYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE
Sbjct: 122 KSARVVGEVMGQFHPHGDSSIYDALVRLVQPWSLRYPLALGQGNFGSAGNDGAAAPRYTE 181

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF+ NYDG   EP +L +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 182 TKMAPLAMEMVRDITEDTVDFQDNYDGRTLEPKILPSRFPNLLVNGSVGIAVGMATNIPP 241

Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G   ++ +PD +    L+AL+E I+GPDFPTGA +LG  GI  AY TGRGSI
Sbjct: 242 HNLREVASGAQWLLAHPDANREELLEALLERIKGPDFPTGAQVLGTKGILEAYRTGRGSI 301

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
            +R V  +E+    R  +VVTE+PYQVN   +  KIAELV++ ++  +AD+RDE S R G
Sbjct: 302 TMRAVVAVEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGKLGGVADIRDETSGRTG 360

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + +
Sbjct: 361 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDGIPRTLALDGFISAWVDHQID 420

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT+Y LN+A  RAH+L G   A+  LD+V+ +IR S   E AR  LM+        
Sbjct: 421 VIVRRTQYRLNEAEARAHILRGYLKALDALDDVIALIRRSETVEVARSGLMK-------- 472

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + E+Q  AILE++L RL  L R  I+++   L   I E 
Sbjct: 473 ------------------LLDIDELQANAILEMQLRRLAALERQKIQDQAAELEQRIAEY 514

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
             IL++ +    II  EL  + D+    RRT I+     DM  ED I  E+MVVTV+  G
Sbjct: 515 NHILATPTVQREIISTELQEITDKYGDDRRTEIMLGFDGDMSMEDLIPEEEMVVTVTRGG 574

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR  +  YR+Q RGGKG  G  +R +D V   F+ +TH  +LF +  G VY+ K + L
Sbjct: 575 YIKRTRIDNYRSQHRGGKGVRGAQLRADDVVEHFFVTTTHHWLLFLTDKGRVYRAKAYEL 634

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 A+G+ + N+L++   E I  ++   + +      Y+V AT+ G +++  L+++ 
Sbjct: 635 QEAGRDAKGQHVANLLAMQPDEEIQQVLDIRDYQV---AQYLVLATRDGLMKKTALTEYD 691

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724
                G IA+ L   D ++S     +++D+LL ++ G  +RF      +R   GR++ GV
Sbjct: 692 TNRTGGIIAINLRDGDALVSALLVDEDDDLLLVSRKGMSLRFSADNQALRPM-GRSTSGV 750

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +G++    D ++S ++V                                           
Sbjct: 751 KGMTFRGDDTLLSASVV------------------------------------------- 767

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      ++ ++  V+E GF KRT++  +R+ NR G GI+   +   +  G L   
Sbjct: 768 ----------GEQGYVFVVTEGGFAKRTAADQYRVQNRGGMGIKVAKL--QDARGDLAGA 815

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
             V + D+I++V   G ++R  V E+    R T GVV    A D+R++S+ +  E
Sbjct: 816 LIVGEEDEILVVLASGKVVRSVVAEVPAKGRDTMGVVFARFADDDRIISLAKNSE 870


>gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma]
          Length = 846

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/909 (36%), Positives = 527/909 (57%), Gaps = 86/909 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH     +     +  V I +E++ S+L+YA++VI+ RA+PD+RDG+KPV RRIL+ M  
Sbjct: 15  EHSSLDSKINFNRVQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMND 74

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+   +++ K A + G VMG+ HPHG+ +IY+A+ RMAQD++ R  LI G GNFGS+DG
Sbjct: 75  LGLSNQERFKKAAAVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDG 134

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K A  L+ ++ ++TVDF   YDG+ +EP VL A +PN+LVNG  GI
Sbjct: 135 DSAAAMRYTEARMSKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGI 194

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HN  EV++  +A I+N +I+   LM+ ++GPDFPTG  ILG   +KN Y 
Sbjct: 195 AVGMATNIPPHNFKEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEILGAENLKNIYN 254

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TG+G I IR  + I +   ++  IV+TEIP+Q+ K++++E IA L +EK I  I DLRDE
Sbjct: 255 TGKGRIFIRSKTQIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDE 314

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+RQG ++VI+LKR  +  V+LN LY+ + +Q  F+ NM+AL    P+   L  +LK F 
Sbjct: 315 SNRQGIKLVIDLKRDVNPHVVLNNLYKNSQVQVSFNFNMIALVKGVPKLVNLKQMLKEFF 374

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR  V+ R+ ++ L+KA  + H++  L IA+ ++D VVR+I+ S N + A+ +LM++  
Sbjct: 375 DFRINVIQRQKQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEK-- 432

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L E+Q++ ILE+ L ++T L  + I+ E   L +
Sbjct: 433 ------------------------YQLDELQSKVILEMSLQKITNLEIEKIKQEDTELSL 468

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVV 540
           +I EC +I++S      I+KQ+LL+++      RRT I     D++ +    I +E +++
Sbjct: 469 KISECQNIINSILLKEQILKQDLLNLQKNFQDGRRTVINMENQDLDIDKSSLIEKEKILI 528

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++H GY+KR+ L  Y+ Q +GGKG  G+ M  +DFV    I STH   LFF++ G VY+
Sbjct: 529 TITHKGYIKRLNLDTYKKQNKGGKGVIGITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQ 588

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +   S  A+G  L+N++ + +GE +TT+    E   + +  Y+V  TK G ++RN
Sbjct: 589 IKGYEIASYSRHAKGIPLVNLIPMAKGEFLTTLTSVTEFNKNKD--YLVLVTKKGFIKRN 646

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           ++ ++  I  +GKIA  L   DE+L+V   + + DI+L +  G+ +R   ++IR    R 
Sbjct: 647 RIQEYANIRSNGKIAFALKKDDEVLAVLKTSGQQDIILASSGGKSIRLKENSIRT-TNRK 705

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S GV G+ + K +Q++  A+V H                                     
Sbjct: 706 SSGVIGMRMDKDEQIVGAAVVCHP------------------------------------ 729

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           EQ IL V+E G+GK+T +  ++   R GKG++   ++  ++ G 
Sbjct: 730 ----------------EQDILVVTEFGYGKKTQASFYKPQQRGGKGVKTLKIT--DKKGH 771

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRE 899
           LVA+  +  N+++IL+S  G +IR+  N++    S+ T+G  +F    D++++++  +++
Sbjct: 772 LVALKTIFPNEELILISQCGQVIRIEANKVSTTKSKNTEGNRLFKLKDDDKLLNLVVVQK 831

Query: 900 SEIVDEAES 908
            E  D  + 
Sbjct: 832 QEDDDSIDE 840


>gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
 gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           equinus ATCC 9812]
          Length = 809

 Score =  772 bits (1993), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/843 (41%), Positives = 530/843 (62%), Gaps = 37/843 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIIDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ +LD+V+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FNLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPDRVITIIKEEMDEIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQRRGG+G  G  + D+DFV +L   +TH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+    ++ + N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGETVQTIISEKGNDETEN--YLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V     ++DI++ TK G  VRF  S++R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKESDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + I    +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EGDEVVGASRITNDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTVNITKKNGKLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  ++ I+ +++ G   RT+  D   + R+  G++   + +      ++ +  V  
Sbjct: 750 GLVTVNGDEDIMVITDTGVMIRTNVADISQTGRATLGVKIMRLDE---NAKIMTLALVQA 806

Query: 850 NDQ 852
            ++
Sbjct: 807 EEE 809



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRA-QRRGGRGVQGTGVNDDDFVRELVSTNTHDHVYFMTNKGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    +     E ++  V+ +G  KR
Sbjct: 563 VYRLKGYEIPEYGRTAKGLPIVNLLKLDEGETVQTIISEKGNDETENYLFFVTRQGVVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G++A ++ +      L+ V   N +D II+ +  G  +R   + 
Sbjct: 623 TKESEFSNIRQN----GLKALNLKE---SDELINVIRTNGDDDIIIGTKTGYSVRFNESS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R  SR+  GV   +  + + VV   RI   + V
Sbjct: 676 VRSMSRSATGVRGVNLREGDEVVGASRITNDQEV 709



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 110/265 (41%), Gaps = 28/265 (10%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           VRR +        R+  +    + LD  D+++S+   ++ +   +  +     RF +S  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETD---VIAQSELMSRFNLSE- 415

Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766
                R S  +  + L      + +++ +    ++       D      + ++  +  + 
Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMD 470

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G
Sbjct: 471 EIKRKYVDPRRTELMVGEVLSIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRG 530

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883
           ++ T V+  + +  LV+    N +D +  +++KG + R+   EI    R  KG   V + 
Sbjct: 531 VQGTGVNDDDFVRELVST---NTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLL 587

Query: 884 STAKDERVVSVERIRESEIVDEAES 908
              + E V +   I   +  DE E+
Sbjct: 588 KLDEGETVQT---IISEKGNDETEN 609


>gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 857

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/852 (39%), Positives = 527/852 (61%), Gaps = 41/852 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EVVD  V +IDN      +  ++ +++I++GPDFPTGA+ILGR GI+ AY T
Sbjct: 182 NIPPHNLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMILGRRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+PY VNKA ++ KIAELVR+K+I  I DL D S
Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY----KPERFTLIGILK 359
            R+G R+ I+L++ A+A+V+LN LY++T LQ  F VNM++L       +P+   L  +L+
Sbjct: 302 SREGMRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLE 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++A +E+VV RRTKY LNKAR+RAH+L GL  A+ N+DEV+RIIR S N + A++ELM 
Sbjct: 362 YYLAHQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMD 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L++VQ +AI+++RL  LTGL R+ +  E   
Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAD 455

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+ RS LL +I++E+L++ ++    R+T I   + D+  ED I RE+ V
Sbjct: 456 LMEKIRKYEAILADRSLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTV 515

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++ LGY+KR+ +  +R+Q RGG+G  G+   ++D++ +L + +TH  ++FF++ G VY
Sbjct: 516 ITMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVY 575

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P     ARG A+IN+L L  GE IT ++P  + E   +  Y++ ATK+G V++
Sbjct: 576 RLKAYEIPEAGRTARGTAIINLLQLMPGECITAVIPLRKFE---DGHYLMMATKNGLVKK 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + ++  + ++G  A+ L   DE++ V+    + DI+L TK G C+RF  + +R   GR
Sbjct: 633 TPIKEYANVRKNGLAAITLRDDDELIEVKLTDDKKDIILVTKDGMCIRFKETDVRS-TGR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRG+++  GD+V++M +    D         M   ++       +           
Sbjct: 692 TSMGVRGMNIDDGDEVVAMQLNSQGDCLLIVSANGMGKRTSMGEFTCQN--RGGKGVKCY 749

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +     +        ++  ++ ++ +G   R +  D  I  R   G++  ++++   + 
Sbjct: 750 KITEKTGDVIGARAVNEDNEVMLITTEGIIIRIACADISILGRITSGVKLINLTEGVTVA 809

Query: 840 ALVAVFPVNDND 851
           ++  V    + D
Sbjct: 810 SVAKVRDKEEKD 821



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 93/255 (36%), Gaps = 19/255 (7%)

Query: 536 EDMVVTV--SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           ED    +  +  G VK+ P+  Y   R+ G   + + +RD+D + ++ +      ++  +
Sbjct: 616 EDGHYLMMATKNGLVKKTPIKEYANVRKNG--LAAITLRDDDELIEVKLTDDKKDIILVT 673

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   + K   +      + G   +N         I         + +     ++  + 
Sbjct: 674 KDGMCIRFKETDVRSTGRTSMGVRGMN---------IDDGDEVVAMQLNSQGDCLLIVSA 724

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709
           +G  +R  + +F      G   +K     E    ++      ++N+++L T  G  +R  
Sbjct: 725 NGMGKRTSMGEF-TCQNRGGKGVKCYKITEKTGDVIGARAVNEDNEVMLITTEGIIIRIA 783

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            + I    GR + GV+ I+L +G  V S+A V   +            ++        D 
Sbjct: 784 CADI-SILGRITSGVKLINLTEGVTVASVAKVRDKEEKDTNAQQAAVEITDSAETEESDQ 842

Query: 770 EEITSLKNDSSVEGN 784
                 ++++  E  
Sbjct: 843 PTDQETQDENRGEEE 857


>gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
 gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270]
          Length = 828

 Score =  772 bits (1992), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/841 (40%), Positives = 523/841 (62%), Gaps = 35/841 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R LL++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    V+++PD     LME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R
Sbjct: 182 PHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKR+  I  +RDES R+G R V
Sbjct: 242 SRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  +++ ++EV++R
Sbjct: 302 IEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + ++DFV +L   STH ++LFF++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L  GE I TI+   ++E++  +    F TK G V+R ++S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLEDGETIQTIINARKEETAGKS--FFFTTKQGIVKRTEVSEFNNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+KL   D++++V   + ++DI++ T  G  VRF  ++IR   GR++ GVRG+ L 
Sbjct: 634 NGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNM-GRSATGVRGVKLR 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+V+  + +                 ++     +           + + +        
Sbjct: 693 EDDRVVGASRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLV 752

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                ++  I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V   
Sbjct: 753 TVDGTED--IMVITNKGVIIRTNVANISQTGRATLGVKIMKL---DADAKIVTFTLVQPE 807

Query: 851 D 851
           D
Sbjct: 808 D 808



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 77/214 (35%), Gaps = 14/214 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   GV+G  +   D V  +      D         R
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQK-RGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGR 562

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++ +   +     +++G  KR
Sbjct: 563 VYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIINARKEETAGKSFFFTTKQGIVKR 622

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           T   +F     N    G+RA  + +      L+ V   +  D II+ +  G  +R     
Sbjct: 623 TEVSEFNNIRQN----GLRALKLKEG---DQLINVLLTSGQDDIIIGTHSGYSVRFNEAS 675

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           IR   R+  GV      +D+RVV   RI++++ V
Sbjct: 676 IRNMGRSATGVRGVKLREDDRVVGASRIQDNQEV 709



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 87/225 (38%), Gaps = 17/225 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VKR  +S +   R+ G     + +++ D + ++ + S    ++  +  G+  +  
Sbjct: 615 TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFN 672

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   + +   ++                 +N  V+  T++G  +R   
Sbjct: 673 EASIRNMGRSATGVRGVKLREDDR---------VVGASRIQDNQEVLVITENGFGKRTSA 723

Query: 663 SDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +D+              +   +  ++  + T     DI++ T  G  +R  ++ I    G
Sbjct: 724 TDYPTKGRGGKGIKTANITPKNG-QLAGLVTVDGTEDIMVITNKGVIIRTNVANI-SQTG 781

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           R ++GV+ + L    ++++  +V   D+   E     ++  ++ +
Sbjct: 782 RATLGVKIMKLDADAKIVTFTLVQPEDSSIAEINTDRENSISKNK 826


>gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
 gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756]
          Length = 853

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/853 (39%), Positives = 514/853 (60%), Gaps = 40/853 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V      + +N +  ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  I DL D+S
Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++ 
Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R   
Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQ +AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+ R  LLG+I++E+L + ++    RRT I     D+  ED I RE++V+TV+
Sbjct: 456 IEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           ++GY+KR+ +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ G VY+ K 
Sbjct: 516 NMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT  +P  E E   +  Y+  ATK G V++  + 
Sbjct: 576 YEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKGLVKKTPIQ 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D++ + ++G  A+ L   D ++ V+      DILL TK GQC+RF    +R   GR S+G
Sbjct: 633 DYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D++I M +              M   ++                    +  
Sbjct: 692 VRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEE--FTKQNRGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +   +E  I+ ++ +G   R    D     R   G++  ++ +   + ++  
Sbjct: 750 KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAK 809

Query: 844 VFPVN---DNDQI 853
           V   +   D +++
Sbjct: 810 VRTASAEIDGEEV 822


>gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
 gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87]
          Length = 846

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/837 (41%), Positives = 522/837 (62%), Gaps = 32/837 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I +EM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N+ Y
Sbjct: 3   EGEKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++YD + RMAQ+WS+R +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D S  EPVV+  R PN+LVNG  GIAVGMATN+ 
Sbjct: 123 EARMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMA 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG VA ID+ DI++D LM+ I+ PDFPTG +I G  G++ A+ TGRG +V+R
Sbjct: 183 PHNLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIYGYDGVREAFKTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S +E+ +  +E I+VTEIPYQVNKA M++K A+L+ +K+I  I+ +RDESDR G R+V
Sbjct: 243 AKSSLEEVN-GKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            +LKR A  +++LN L+++T+LQS FSVN +AL   +PE   L  I+  FV  R EVVVR
Sbjct: 302 YQLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGRPEMLNLKDIIYHFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DRAH+L GL IA  N+DEV+ +IR S N E AR++L+ R           
Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q RAI+E+RL +LTGL +D +R E + +   IK+  DIL
Sbjct: 411 ---------------FELSELQARAIVEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + + R + +IK ELL VK++    RR+ I     D+  ED I  E +++T+SH GY+KR 
Sbjct: 456 ARKERRMQVIKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+ G   R+EDF+  LF  + H  +LFF+  G  +  +V+ +P GS 
Sbjct: 516 SLNEYKRQNRGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N++++ Q +R+   +   +  DE   NN +V+ ATK G V++  L  + +  
Sbjct: 576 SSKGRAIQNLINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G  A+ +   DE+L  +  T ++ ++L  K G+ +RF     R   GRN+ GVRGI+L
Sbjct: 636 TNGINAITIKEDDELLEAKLTTGDSQVMLAVKSGKAIRFEEGKTRPM-GRNASGVRGITL 694

Query: 730 AKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           A   D+V+ M  V   +++            +              +K  S  E   +  
Sbjct: 695 ADDNDEVVGMISVDDMESNILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLV 754

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             + +   +  ++ +++ G   R    D R+  R+ +G+R  ++   + I A+  V 
Sbjct: 755 AIKNVTDDDD-LMIINKSGIAIRLEVSDLRVMGRATQGVRLINLKGKDSIAAVAKVL 810



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 58/452 (12%), Positives = 138/452 (30%), Gaps = 51/452 (11%)

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            F    +  R    +   +        L        E++  I+   +    +   MQ   
Sbjct: 410 RFELSELQARAIVEMRLRQLTGLEQDKLRAEYD---EIIETIKDLKDILARKERRMQ--V 464

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT--RAILELRLARLTGLGRDDIRNELNSL 480
              ++ ++ +   D   +        LS         + + ++    + R  +       
Sbjct: 465 IKDELLEVKEKYGDGRRSTIEYAGGDLSIEDMIPDERVIITISHAGYIKRTSLNEYKRQN 524

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME------------ 528
              + +      +   L  +                +   +      E            
Sbjct: 525 RGGVGQKGSNTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEGSKSSKGRAIQN 584

Query: 529 -------------------DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
                               ++  V    V+  +  G VK+  L  Y   R  G   + +
Sbjct: 585 LINIEQDDRVKAFICTQDLKDEEYVNNHFVIMATKKGQVKKTSLEQYSRPRTNG--INAI 642

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
            ++++D + +  + +  + V+     G   +   +      P  R  + +  ++L     
Sbjct: 643 TIKEDDELLEAKLTTGDSQVMLAVKSGKAIR---FEEGKTRPMGRNASGVRGITLADDND 699

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSV 687
               M   +D  S     ++  +++G  +R+ L D+        G   + +  +   L  
Sbjct: 700 EVVGMISVDDMESN----ILVVSENGYGKRSSLEDYRITNRGGKGVKTISITEKTGNLVA 755

Query: 688 ETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               T ++D+++  K G  +R  +S +RV  GR + GVR I+L   D + ++A VLH + 
Sbjct: 756 IKNVTDDDDLMIINKSGIAIRLEVSDLRVM-GRATQGVRLINLKGKDSIAAVAKVLHEED 814

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           + +                   T+ +     +
Sbjct: 815 EIEVEDIEDVENPDNAGEALDGTDIVQDDSEE 846


>gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519]
 gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium
           sticklandii]
          Length = 817

 Score =  771 bits (1991), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/905 (39%), Positives = 518/905 (57%), Gaps = 89/905 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E       E    I  + I DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRILF M
Sbjct: 1   MSEEK----NEMIDKIVDIEIEDEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+   K Y K A + G+V+GKYHPHG+ A+YDA+ ++AQD+S R  L+ G GNFGS+
Sbjct: 57  NDLGLVPEKSYRKSATVVGDVLGKYHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++QK    LL D+ K+TVDF  NYD   +EP VL ARYPN+LVNG  
Sbjct: 117 DGDSAAAMRYTEAKMQKLTLELLKDIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSN 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT+IP HNL EV+D  V +IDN +  ++ +M+ I+GPDFPTGA I+G+  I++A
Sbjct: 177 GIAVGMATSIPPHNLREVIDAVVELIDNEEATVEDMMKHIKGPDFPTGATIMGKGSIRDA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + IE+    + QI+VTEIPYQVNKA M+EKIA+LV++KRI  I DLR
Sbjct: 237 YMTGRGKVTVRSKADIEELPNGKSQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLR 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R G R+VIE++R  + +++LN LY+++ LQ +FS+ M++L   +P+   +  +L  
Sbjct: 297 DESNRDGIRIVIEVRRDVNPNIVLNNLYKHSQLQDVFSIIMLSLVNGEPKVLNIRDMLVH 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++ VV RRT+Y L KA++RAH+L GL IA+ N+D V++IIR S N   A+ +L + 
Sbjct: 357 YLNHQKNVVRRRTEYDLRKAKERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEE 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS++Q++AIL++RL RLTGL R  I  E   L
Sbjct: 417 --------------------------FGLSDIQSQAILDMRLQRLTGLERGKIEEEFAEL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I     IL  +S LLGIIK E+L ++++    RRT I E   ++   D I  E++ V
Sbjct: 451 MKNIAYYESILQDQSILLGIIKDEMLKIREKHGDKRRTEITEAADEINILDTIPDEEVTV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T +H GY+KR+P+  Y+AQRRGGKG + +  RD+DFV  L + + H+ +LF ++ G +Y+
Sbjct: 511 TFTHYGYIKRIPMDTYKAQRRGGKGITSMTTRDDDFVEKLLLTTNHSLILFLTNRGRIYR 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                              N   + Q  RI              N  V            
Sbjct: 571 L------------------NAYEIPQSGRIAKGTNIVNLIPLEKNEKV------------ 600

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             + FI I                        EN +++ TK G   +  IS  R  + RN
Sbjct: 601 --TSFISIRDVPA-------------------ENYLVMCTKKGVIKKTQISEFR-KSTRN 638

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             G+  ISL + D++I+   V   D + D  I   K M+              ++   + 
Sbjct: 639 --GLIAISLREDDELIN---VKTTDGEQDFIIVTKKGMAISFDEKQVRDMGRAAMGVRAI 693

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                 E    EL    + +L +SEKG+GKRT++ D+R+  R GKG++   +S+  + G 
Sbjct: 694 RLAPDDEVVAMELVDPNKQLLVISEKGYGKRTNTKDYRLQTRGGKGVKTYKISE--KTGI 751

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV    V  +++I++++  G+LIR+ VN+I I SR T GV +  T ++  VV++ RI   
Sbjct: 752 LVGAKAVYKDEEIMIINSDGSLIRMSVNQISILSRVTSGVKVMRTDENSLVVALARIVVP 811

Query: 901 EIVDE 905
           +  + 
Sbjct: 812 KEDEN 816


>gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
 gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis
           ATCC 700338]
          Length = 818

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/828 (41%), Positives = 519/828 (62%), Gaps = 34/828 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   +        Y+ F T+ G V+R   S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTIIS--QSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      NDI++ TK G  VRF  SA+R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDGDELINVIRTNGNNDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + I    +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EGDEVVGASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  ++ I+ +++ G   RT+      + R+  G++   + +  +
Sbjct: 750 GLATVNGDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMKLDQDAK 797



 Score = 94.9 bits (234), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/265 (18%), Positives = 109/265 (41%), Gaps = 28/265 (10%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           VRR +        R+  +    + LD  DE++S+   ++ +   +  +     RF +S  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETD---VIAQGELMSRFDLSE- 415

Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766
                R S  +  + L      + +++ +    ++       D      + ++  +  + 
Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMD 470

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G
Sbjct: 471 DIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRG 530

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883
           ++ T V+  + +  LV+    + +D +  +++KG + R+   EI    R  KG   V + 
Sbjct: 531 VQGTGVNDDDFVRELVST---STHDHVYFMTNKGRVYRLKAYEIPEYGRTAKGLPIVNLL 587

Query: 884 STAKDERVVSVERIRESEIVDEAES 908
              + E V +   I      D+ ES
Sbjct: 588 KLDEGEIVQT---IISQSGHDDKES 609


>gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 853

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/853 (39%), Positives = 515/853 (60%), Gaps = 40/853 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V      + +N +  ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  I DL D+S
Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++ 
Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R   
Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQ +AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+ R  LLG+I++E+L + ++    RRT I     D+  ED I RE++V+TV+
Sbjct: 456 IEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           ++GY+KR+ +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ G VY+ K 
Sbjct: 516 NMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT  +P  E E   +  Y+  ATK G V++  + 
Sbjct: 576 YEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKGLVKKTPIQ 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D++ + ++G  A+ L   D ++ V+      DILL TK GQC+RF    +R   GR S+G
Sbjct: 633 DYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D++I M +              M   ++                    +  
Sbjct: 692 VRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEE--FTKQNRGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +   +E  I+ ++ +G   R    D     R   G++  ++ +  ++ ++  
Sbjct: 750 KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKEKVASVAK 809

Query: 844 VFPVN---DNDQI 853
           V   +   D +++
Sbjct: 810 VRTASAEIDGEEV 822


>gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427]
 gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427]
          Length = 844

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/855 (40%), Positives = 512/855 (59%), Gaps = 45/855 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +++     I    I DEMQN Y+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+
Sbjct: 1   MDTNDVTYDRIIHRDINDEMQNCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K+Y K ARI G+ MGKYHPHG+++IY A+ RMAQ++S R  L++GQGNFGS+DGD P
Sbjct: 61  GSDKQYRKSARIVGDTMGKYHPHGDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSP 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K    +L D+ KDTV+FRPN+D S +EP VL +R+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKMTALMLADIDKDTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDN----------PDIDLDALMEIIRGPDFPTGAVILGRT 235
           MATNIP HNL EVV+G + +IDN           + +++ LM II GPDFPTGA I GR 
Sbjct: 181 MATNIPPHNLTEVVNGVIRMIDNYMGENEEHEVRETEIEELMAIIEGPDFPTGATIYGRY 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI  AY TGRG + ++  + IE   G + +IVVTEIPY VNK++++EK+A+LV+E++I  
Sbjct: 241 GIDQAYRTGRGKVKVKAKAEIEAMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDG 300

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I D+RDESDR G  +VIEL+R  +  VILNQLY+YT LQ  FS+NM+AL   KP+   L 
Sbjct: 301 ITDIRDESDRNGISMVIELRRDVNPTVILNQLYKYTQLQDTFSINMLALVDDKPKVLNLK 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL+ ++  ++EVV RRT++ LNKA  RAH+L GL  A+ N+D VV +IR S N + A+ 
Sbjct: 361 QILEEYLKHQKEVVTRRTQFELNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKD 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM+                             L+E+Q +AI+E+RL  LTGL R+ I  
Sbjct: 421 KLMEAI--------------------------ELTEIQAQAIVEMRLRALTGLEREKIDQ 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L  +I+    IL+S  +LL +IK E+  VK +    RRT I     + + ED I  
Sbjct: 455 EYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGDGRRTDITIDEDEYDIEDLIDE 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++ LGY+KR+PL  Y+ Q RGGKG  GV   ++DF+  LF+ +    ++FF++ 
Sbjct: 515 ENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIEDDFIKQLFVTTNFNYIMFFTNK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y+ K +R+P     ARG A++N+L L++ E+IT + P  E E   +N ++   TK G
Sbjct: 575 GKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVFPIKEFE---DNTFLTMVTKKG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            +++  L DF  I + G IA+ L+  DE++ V   T ++ IL+ T+ GQ + F  + +R 
Sbjct: 632 QIKKTPLKDFRNIRKGGLIALSLNEEDELVDVHQTTSKDAILVATRNGQGIMFDATDVRP 691

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GVR I+L + D+VI   +    +         +   +      +   +     
Sbjct: 692 M-GRTARGVRAINLGETDEVIGATVPKEGEQILTTTEKGLGKRTQIEAFRA--QKRGGKG 748

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              + +              +E  +L ++ +G   R          R+ +G++  +V+  
Sbjct: 749 LRINKITEKTGCIIGVASVSEEDELLLITSQGIIIRIKVAQISSIGRNAQGVKLINVAD- 807

Query: 836 NEIGALVAVFPVNDN 850
                +V +  VN+ 
Sbjct: 808 --DVQVVCMEKVNEE 820



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 147/418 (35%), Gaps = 30/418 (7%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +  R    L + +        L         +    +     +    E+ Q+  +     
Sbjct: 439 MRLRALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGDGRRTD 498

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-DIRNELNSLGIEIKEC 487
             ID  +     +  +  + ++  Q   I  + L       R       +N++  +  + 
Sbjct: 499 ITIDEDEYDIEDLIDEENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIEDDFIKQ 558

Query: 488 LDILSSRSRLLGIIKQELLSVKDELD------TPRRTRIVEGLLDMEDEDCIVR------ 535
           L + ++ + ++    +                T R T IV  L   +DE           
Sbjct: 559 LFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVFPIKEF 618

Query: 536 EDMVVT--VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           ED      V+  G +K+ PL  +R  R+GG     + + +ED + D+   ++  ++L  +
Sbjct: 619 EDNTFLTMVTKKGQIKKTPLKDFRNIRKGG--LIALSLNEEDELVDVHQTTSKDAILVAT 676

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G         +      ARG   IN+   ++                     ++  T+
Sbjct: 677 RNGQGIMFDATDVRPMGRTARGVRAINLGETDE---------VIGATVPKEGEQILTTTE 727

Query: 654 HGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPI 710
            G  +R ++  F    R   G    K+  +   +  V + ++E+++LL T  G  +R  +
Sbjct: 728 KGLGKRTQIEAFRAQKRGGKGLRINKITEKTGCIIGVASVSEEDELLLITSQGIIIRIKV 787

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           + I    GRN+ GV+ I++A   QV+ M  V     D +     +  +S +  +   +
Sbjct: 788 AQISSI-GRNAQGVKLINVADDVQVVCMEKVNEEFIDDNVEEASITEVSDEDIVDEQE 844


>gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110]
 gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110]
          Length = 841

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/832 (42%), Positives = 507/832 (60%), Gaps = 32/832 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + + I  ++I DEM++SYL Y+++VI+ RA+PD+RDGLKPVHRR+LFGM ++G++  + Y
Sbjct: 2   QREKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ GEV+GKYHPHG++A+YD++ RM Q++SLR  L++GQGNFGSVDGD PAA RYT
Sbjct: 62  KKSARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ + +  +L DL K+T+DF PN+D S +EP+VL A +PN+L+NG  GIAVGMATNIP
Sbjct: 122 EVRMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+DG +A I+NP+I ++ LM  I+ PDFPT  +I G  G+++AY TGRG IV+R
Sbjct: 182 PHNLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIYGYNGVRDAYLTGRGKIVLR 241

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               +E      RE I++TE+PYQVNKA ++EKIA LV++K++  IADLRDESDR G RV
Sbjct: 242 AKVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A   V++N+L++ T LQ  F V M+AL G  P   TL   ++ +V  R EV++
Sbjct: 302 VIELKKDAVTQVVINRLFKLTQLQETFGVIMLALVGGIPRVLTLKETIQYYVNHRHEVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT++ L++A  RAH+L GL I + NLDE++  IR SP+ ETAR  LM            
Sbjct: 362 RRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMA----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LS++Q +AIL++RL RLTGL R  I +E   L   I+    I
Sbjct: 411 ---------------TFSLSDLQAKAILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L++    + +IK+ELL +K      RRT+IV    D   ED I  ED+V+T++H GY+KR
Sbjct: 456 LANEKLQMQLIKKELLQIKKTYGDERRTQIVYETEDFSVEDMIAEEDVVITITHQGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            P+S YR Q RGG+G SGV  R++DF+  +FI STH  +LFF+S G  Y  KV  +P   
Sbjct: 516 FPVSGYRRQGRGGRGISGVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+++ N++    GE+I   +   E     +  ++V ATK+G +++  LS++    R
Sbjct: 576 RTARGRSITNLIEFATGEKIKASINVKEFN---DTQFIVMATKNGTIKKTPLSEYSNPRR 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SG IA+ +   DE++        + I+L    G  VRFP   +R   GRNS+GV+G S++
Sbjct: 633 SGIIAINITDNDELVGASLTDGSHQIVLAKNTGYAVRFPEQNVRPM-GRNSIGVKGASIS 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             + +ISM      DA             +              +    + E        
Sbjct: 692 GDEAIISMVSTPRNDATLLAITDNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLVDM 751

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            E+   E  I+ ++ KG   R    D R+  R+  G+R   + + + + A+ 
Sbjct: 752 LEVNDGED-IIIITNKGIVNRQHIADIRVMGRNTSGVRLIRLDEDDFVSAVA 802



 Score = 81.8 bits (200), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 14/249 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G +K+ PLS Y   RR G     +   DE     L        ++  
Sbjct: 604 FNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINITDNDELVGASL--TDGSHQIVLA 661

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G+  +     +             N + +                +  N+  ++  T
Sbjct: 662 KNTGYAVRFPEQNVRPMGR--------NSIGVKGASISGDEAIISMVSTPRNDATLLAIT 713

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
            +G  +R+ + D+    R     + L + +++   + +       DI++ T  G   R  
Sbjct: 714 DNGYGKRSAIEDYRMTKRGANGVITLKANEKVGKLVDMLEVNDGEDIIIITNKGIVNRQH 773

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           I+ IRV  GRN+ GVR I L + D V ++A V   D + +E      +  +     S + 
Sbjct: 774 IADIRVM-GRNTSGVRLIRLDEDDFVSAVARVPKEDTEEEETPEENDNQISLPLDSSDNN 832

Query: 770 EEITSLKND 778
            +      +
Sbjct: 833 PQPEDEDPE 841


>gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34]
 gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 818

 Score =  771 bits (1990), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/828 (41%), Positives = 521/828 (62%), Gaps = 34/828 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNPD+    LME++ GPDFPTGA+++G++GI+ AY TG+GSIV+R
Sbjct: 182 PHNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVMGKSGIRKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R +
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+  ++  ++EV+VR
Sbjct: 302 IEVRRDASANVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLKQIIVDYIEHQKEVIVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL R+ I+ E + L   I +  DIL
Sbjct: 411 ---------------FDLSERQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKR 550
           +   R++ IIK+E+  +K +   PRRT ++ G +   +++ ++ E+ V +T+S+ GY+KR
Sbjct: 456 AKPERVVAIIKEEMDDIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +RAQ+RGG+G  G  + D+DFV +L   STH  V F ++ G VY+ K + +P   
Sbjct: 516 LAQDEFRAQKRGGRGVQGTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A+G  ++N+L L++GE + TI+   +     N  Y+ F T+ G V+R K S+F  I +
Sbjct: 576 RTAKGLPIVNLLKLDEGEIVQTIIS--QSGHDDNESYLFFVTRQGVVKRTKESEFSNIRQ 633

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G  A+ L   DE+++V      +DI++ TK G  VRF  SA+R  + R++ GVRG++L 
Sbjct: 634 NGLKALNLKDGDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMS-RSATGVRGVNLR 692

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           +GD+V+  + I    +        Y K   A      G   +     N +   G ++   
Sbjct: 693 EGDEVVGASRISDDQEVLVITEKGYGKRTLASEYPTKGRGGKGIKTANITEKNGQLA--- 749

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                  ++ I+ +++ G   RT+      + R+  G++   + +  +
Sbjct: 750 GLATVNGDEDIMVITDTGVIIRTNVASISQTGRATLGVKIMRLDQDAK 797



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 109/263 (41%), Gaps = 27/263 (10%)

Query: 657 VRRNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           VRR +        R+  +    + LD  DE++S+   ++ +   +  +     RF +S  
Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETD---VIAQGELMSRFDLSE- 415

Query: 714 RVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLIS 766
                R S  +  + L      + +++ +    ++       D      + ++  +  + 
Sbjct: 416 -----RQSQAILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMD 470

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR   R G+G
Sbjct: 471 DIKRKYADPRRTELMVGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRG 530

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIF 883
           ++ T V+  + +  LV+    + +D +  +++KG + R+   EI    R  KG   V + 
Sbjct: 531 VQGTGVNDDDFVRELVST---STHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLL 587

Query: 884 STAKDERVVSVERIRESEIVDEA 906
              + E V ++  I +S   D  
Sbjct: 588 KLDEGEIVQTI--ISQSGHDDNE 608


>gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa]
 gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa]
          Length = 932

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/916 (38%), Positives = 506/916 (55%), Gaps = 78/916 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +    S       +    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M +
Sbjct: 70  DPNGGSPGGGNGRVVQTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHE 129

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+   K + KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR  LI+G GNFGSVD 
Sbjct: 130 LGLSSKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDA 189

Query: 123 DPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           DPPAA RYTECRL      + L DL +DTVDF PN+D S +EP +   R P +L+NG  G
Sbjct: 190 DPPAAMRYTECRLDGLTEAVFLADLEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSG 249

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMAT IP HNLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI +AY
Sbjct: 250 IAVGMATKIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGIIMGNQGILDAY 309

Query: 242 ATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            +G+G IV+RG + +E   +   R  +++ EIPYQ NKA+++EKIAELV +K +  I+D+
Sbjct: 310 RSGQGRIVVRGKTDVELLDSKTKRNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDI 369

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G R+VIELKRGA   ++LN LYR T LQS FS NMV +   +P++  L  +L+
Sbjct: 370 RDESDRSGMRIVIELKRGADPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKELLQ 429

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+ FR  VV RR  + L++A+ R H++ G+   + NLD VV IIR + +   A      
Sbjct: 430 AFLDFRCSVVERRAMFKLSEAQKRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASA---- 485

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q  AIL++ L RLT L       E  S
Sbjct: 486 ----------------------DLRNEFSLSEKQAEAILDISLRRLTLLEGKKFVEESKS 523

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDM 538
           L  +I +  ++LSSR  +L +I+QE + +K++   PRR+ + +     +ED D I  E+M
Sbjct: 524 LMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNPRRSMLEDSDSGQLEDIDVIPNEEM 583

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++ +S  GYVKR+  + +  Q RG  G+S   +RD D ++D  +   H  VL+FS  G V
Sbjct: 584 LLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDSDAMSDFIVCHAHDRVLYFSDQGIV 643

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y    +++P  +  A G  LI  LSL+ GERIT+I+P  E      + +++  T +G ++
Sbjct: 644 YSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSIIPVSEFV---EDQFLLMLTVNGYIK 700

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +  L+ F  I  +G IA++L   DE+  V  CT  + + + ++ G  +      IR   G
Sbjct: 701 KVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVAMASQNGMVILTSCENIRAL-G 759

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN+ G   + L +GD++ SM I+  +     E                            
Sbjct: 760 RNTRGGVAMRLREGDKIASMDIIPASLQKDLEVA-------------------------- 793

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                  S++     K    ++L VSE G GKR     F+ S  +  G+      +    
Sbjct: 794 -------SKDSENNNKGTGPWLLFVSESGHGKRVPLSSFKQSRLNRVGLIGYKFFE---E 843

Query: 839 GALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             L AVF V          ++Q++LVS  GT+ R+ V +I I SR  +GV++       +
Sbjct: 844 DHLAAVFAVGFSLTEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLEHAGK 903

Query: 891 VVSVERIRESEIVDEA 906
           + S   I  ++   E 
Sbjct: 904 IQSTSLISAADPELEE 919


>gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 828

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/849 (40%), Positives = 510/849 (60%), Gaps = 40/849 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E     I  V +  +M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E+V+  V +IDN      +  +D L+ I++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + QI+VTE+PY VNKA ++EKIAELVR+K+I  I D+ D S
Sbjct: 242 GRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ I L+R A+A+VILN+LY++T +Q  F V M+AL G  P+  +L+ +L+ ++A
Sbjct: 302 NREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLA 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA  RAH++ GL  A+  +D++++IIR S   + A+  LM     
Sbjct: 362 HQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLM----- 416

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T   SEVQ + I+ +RL +LTG+ R+ +  E   L I+
Sbjct: 417 ---------------------DTFGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   ILS R+ LL +I+QE+L++ ++    RRT I     D+  ED I +E+ V+ ++
Sbjct: 456 IRELKAILSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGGKG  G+   D+D++ +L + +TH  ++FF+S G VY+ K 
Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+IN+L L   E+IT ++P  E +      Y+  ATK+G V++  + 
Sbjct: 576 YEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFK---KGNYLFMATKNGLVKKTPIE 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    + DI+L TK GQC+RF  + +R   GR S+G
Sbjct: 633 DYENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L + D+VI M +    D         +   ++                    +  
Sbjct: 692 VRGINLLEEDEVIGMQLTCQGDYLLIVSEKGLGKRTSI--SEFTRQNRGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +    E  I+ ++ +G   R       I  R   G++  D+        + +
Sbjct: 750 KTGNVIGVKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDIT---VAS 806

Query: 844 VFPVNDNDQ 852
           +  V + ++
Sbjct: 807 IAKVREKEE 815


>gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
 gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 853

 Score =  770 bits (1989), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/853 (39%), Positives = 514/853 (60%), Gaps = 40/853 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  +AQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ KDTVDF PN+D + +EPVVL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVA-----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V      + +N +  ++ +++II+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +I+VTE+P+ VNKA ++EKIAELVR+K++  I DL D+S
Sbjct: 242 GRGKIRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G R+ IEL+R  + +VILNQLY++T LQ  F V M+AL   +P+   ++ +LK ++ 
Sbjct: 302 SREGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLALVNNEPKVMNILDMLKYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S N + A+ EL+ R   
Sbjct: 362 HQEEVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSEVQ +AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FDLSEVQAQAIVDMRLRALTGLEREKLEAEYAELMKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+ R  LLG+I++E+L + ++    RRT I     D+  ED I RE++V+TV+
Sbjct: 456 IEEYRAILADRKLLLGVIRKEILVISEKYGDERRTHIGYDEFDISMEDLIPRENVVITVT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           ++GY+KR+ +  +++Q RGGKG  G+   +EDF+ +LF+ ++H  ++FF++ G VY+ K 
Sbjct: 516 NMGYIKRMSMDTFKSQNRGGKGIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT  +P  E E   +  Y+  ATK G V++  + 
Sbjct: 576 YEIPEAGRTARGTAVINLLQLMPDEKITATIPIKEYE---DGKYLFMATKKGLVKKTPIQ 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D++ + ++G  A+ L   D ++ V+      DILL TK GQC+RF    +R   GR S+G
Sbjct: 633 DYMNVRKTGLAAISLREDDLLIEVKVTDNAQDILLVTKYGQCIRFNEKDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D++I M +              M   ++                    +  
Sbjct: 692 VRGMNLSDNDEIIGMQMSSQGKDMLIVSEKGMGKRTSMEE--FTKQNRGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +   +E  I+ ++ +G   R    D     R   G++  ++ +   + ++  
Sbjct: 750 KTGNVVGMKAVDEESEIMIINTEGIVIRMKCSDISQYGRITSGVKLINLPEKERVASVAK 809

Query: 844 VFPVN---DNDQI 853
           V   +   D +++
Sbjct: 810 VRTASAEIDGEEV 822


>gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
 gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798]
          Length = 809

 Score =  770 bits (1988), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/828 (42%), Positives = 509/828 (61%), Gaps = 33/828 (3%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EM++SYL YA++VI+ RA+PD+RDGLKPV RR L+ M Q+G+  + +Y K A
Sbjct: 6   VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            I GEV+  YHPHG++A+YD L RMAQD++LR  L++GQGNFGSVDGD  AA RYTE RL
Sbjct: 66  GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD S +EPVVL +R PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E+ DG + +ID+PD  ++ L +I++GPDFPTG +ILGR GI +AY TG+G I++R  +H
Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIILGREGILSAYGTGKGKIIVRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+  G+R  I+VTE+PYQVNKAA++EKIAELV+E+RI  I+D+RDESDR G R+VIEL+
Sbjct: 246 IEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIELR 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTK 374
           R A    +LNQLY++T +Q+ F VN +AL     P   TL  +++ ++  R+ V+ RRT+
Sbjct: 306 REAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRTE 365

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KAR RAHVL GL IA++NLD V+  IR S + + A+ +LMQ               
Sbjct: 366 YDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQ--------------- 410

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ +AIL+++L RL  L R  I +EL  +  +I+E   IL+S 
Sbjct: 411 -----------DFGLTEVQAQAILDMQLRRLAALERQKIEDELKEVRAQIREYESILASP 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            ++L I+K +L  ++D+    RRT+IVE   D+ DED I   ++ V+V+  GY+KR+P  
Sbjct: 460 EKVLAIVKSDLQEIRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPD 519

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR QRRGG+G +GV ++D D V  L + +T  SVLFF++ G VY+ K   +P  S  ++
Sbjct: 520 TYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSK 579

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G  L+N+++L   ER+T ++   E +    + Y+   TK+G ++R  L ++  +  +G I
Sbjct: 580 GLPLVNLINLEPHERVTEVIAVREFK---PDRYLTTITKNGKIKRTSLEEYSSVRSNGLI 636

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           AM L+  DE+  V      +DIL+ T  GQ +RFP S +R   GR ++GV  I L++GD+
Sbjct: 637 AMSLEEGDELRDVRLLGDNDDILVLTAKGQSIRFPASDVRP-TGRQAIGVTAIRLSEGDE 695

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V++M +V                 ++             S      ++    +     + 
Sbjct: 696 VVAMEVVQSGAEILLVTKKGFGKRTSI--DEFNRQARAGSGARAIKIDEKTGDLATARMA 753

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            ++  +L  S  G   R  +      +++ +G+    +   + + +L 
Sbjct: 754 PEDSEVLIASASGQVVRLKTNTISKQSKAARGVSLMTLKPNDSVTSLA 801



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 61/254 (24%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQENDILLTTKLGQCV 706
           V  T  G ++R     +    R G+    +     D +  +  C   + +L  T  G+  
Sbjct: 505 VSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVY 564

Query: 707 RFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +     I   + R S G   V  I+L   ++V  +  V                      
Sbjct: 565 QIKAHEI-PDSSRTSKGLPLVNLINLEPHERVTEVIAVRE-------------------- 603

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            ++++ T+++ G  KRTS  ++      
Sbjct: 604 ------------------------------FKPDRYLTTITKNGKIKRTSLEEYSSVR-- 631

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G+ A  + +      L  V  + DND I++++ KG  IR P +++R   R   GV   
Sbjct: 632 SNGLIAMSLEEG---DELRDVRLLGDNDDILVLTAKGQSIRFPASDVRPTGRQAIGVTAI 688

Query: 884 STAKDERVVSVERI 897
             ++ + VV++E +
Sbjct: 689 RLSEGDEVVAMEVV 702



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/216 (20%), Positives = 90/216 (41%), Gaps = 17/216 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  + T++  G +KR  L  Y + R  G     +   DE     L     +  +L  
Sbjct: 604 FKPDRYLTTITKNGKIKRTSLEEYSSVRSNGLIAMSLEEGDELRDVRLLG--DNDDILVL 661

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G   +     +     QA G   +  + L++G+ +  +          +   ++  T
Sbjct: 662 TAKGQSIRFPASDVRPTGRQAIG---VTAIRLSEGDEVVAMEVVQ------SGAEILLVT 712

Query: 653 KHGNVRRNKLSDFIQINR--SGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCVRF 708
           K G  +R  + +F +  R  SG  A+K+D    D + +     +++++L+ +  GQ VR 
Sbjct: 713 KKGFGKRTSIDEFNRQARAGSGARAIKIDEKTGD-LATARMAPEDSEVLIASASGQVVRL 771

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             + I     + + GV  ++L   D V S+AI+ + 
Sbjct: 772 KTNTI-SKQSKAARGVSLMTLKPNDSVTSLAIIANN 806



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/188 (12%), Positives = 65/188 (34%), Gaps = 13/188 (6%)

Query: 727 ISLAKGDQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           I    GD+     V +   +   D   +  +          + +  DT            
Sbjct: 473 IRDKYGDERRTKIVEASGDIRDEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVN 532

Query: 782 EGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG---IRATDVSKI 835
              + +    E   +      +L  + KG   +  +++   S+R+ KG   +   ++   
Sbjct: 533 GVGVKDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKAHEIPDSSRTSKGLPLVNLINLEPH 592

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             +  ++AV     +  +  ++  G + R  + E     R + G++  S  + + +  V 
Sbjct: 593 ERVTEVIAVREFKPDRYLTTITKNGKIKRTSLEEYSSV-R-SNGLIAMSLEEGDELRDVR 650

Query: 896 RIRESEIV 903
            + +++ +
Sbjct: 651 LLGDNDDI 658


>gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
 gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583]
          Length = 828

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/849 (40%), Positives = 510/849 (60%), Gaps = 40/849 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E     I  V +  +M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ K+T+DF PN+DG+ +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E+V+  V +IDN      +  +D L+ I++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + QI+VTE+PY VNKA ++EKIAELVR+K+I  I D+ D S
Sbjct: 242 GRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ I L+R A+A+VILN+LY++T +Q  F V M+AL G  P+  +L+ +L+ ++A
Sbjct: 302 NREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLALVGNTPKVMSLLEMLEHYLA 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA  RAH++ GL  A+  +D++++IIR S   + A+  LM     
Sbjct: 362 HQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLM----- 416

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                 T   SEVQ + I+ +RL +LTG+ R+ +  E   L I+
Sbjct: 417 ---------------------DTFDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   ILS R+ LL +I+QE+L++ ++    RRT I     D+  ED I +E+ V+ ++
Sbjct: 456 IRELKAILSDRNLLLRVIRQEILAIAEKYGDDRRTAIGYDEFDISMEDLIPKENTVIAMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +R+Q RGGKG  G+   D+D++ +L + +TH  ++FF+S G VY+ K 
Sbjct: 516 KLGYIKRMTVDNFRSQNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P  S  ARG A+IN+L L   E+IT ++P  E +      Y+  ATK+G V++  + 
Sbjct: 576 YEIPEASRTARGTAIINLLQLQPEEKITAVIPINEFK---KGNYLFMATKNGLVKKTPIE 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    + DI+L TK GQC+RF  + +R   GR S+G
Sbjct: 633 DYENVRKTGLAAIALREDDELIEVKFTDNKKDIILVTKFGQCIRFNETDVRS-TGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L + D+VI M +    D         +   ++                    +  
Sbjct: 692 VRGINLLEEDEVIGMQLTCQGDYLLIVSEKGLGKRTSI--SEFTRQNRGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +    E  I+ ++ +G   R       I  R   G++  D+        + +
Sbjct: 750 KTGNVIGVKAVNSENEIMMITTEGIIIRLECEGISILGRITSGVKLMDLKDDIT---VAS 806

Query: 844 VFPVNDNDQ 852
           +  V + ++
Sbjct: 807 IAKVREKEE 815


>gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
 gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A
 gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129]
          Length = 839

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/903 (36%), Positives = 519/903 (57%), Gaps = 88/903 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL D+ KDTVDF  NYDG  QEP VL A +PN+L NG  GIAVGM+T
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP+HNL E++ G + +IDNPD  ++ L+ +I+GPDFPTGA I+   GI++ + TG+G++
Sbjct: 193 SIPSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKGIESYFETGKGNV 252

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR    IE+    R  +VVTEIPY VNK +++EKI ELV+ + I  IAD+RDES R+G 
Sbjct: 253 VIRSKVSIEQLPT-RAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P+   +   L  ++  + +V
Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+T++ L K ++R H+L GL IA  N+DEV+ II+ S N + A   L +R        
Sbjct: 372 LIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHER-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q RA+L++RL  L+ L  + ++ E   L   I+ C 
Sbjct: 424 ------------------FGLDEIQARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQ 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +L+ +   L +IK++L  + ++   PRR+ I+     D++DED I +E++V+T+S  GY
Sbjct: 466 QVLADKQLQLKLIKEQLTKINEQFGDPRRSEILYGISEDIDDEDLITQENVVITMSTNGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P
Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G    +G   +N++ +++ E+I  ++   +      N Y  F TK+G ++R  LS+F  
Sbjct: 586 PGFRTNKGIPAVNLIKIDKDEKICALISVNDY----QNGYFFFCTKNGTIKRTSLSEFAN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I   GK A+     D + SV   + ++DI + +  G  VRF    +R  + R ++GV GI
Sbjct: 642 ILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRFHEDTVRPLS-RAAMGVLGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + + V  ++   +                                            
Sbjct: 701 NLNQCEFVNGLSTSSNG------------------------------------------- 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+V + G GK TS   +R++ R+ KG++   V+   + G +V    V
Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTA--KTGPVVTTTTV 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             N+ ++++S  G ++R+ + ++    + T GV +    + ER+ +V   ++ E +    
Sbjct: 766 FGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVKLIKLKEKERLETVTIFKKEEAIKTTT 825

Query: 908 STE 910
           +TE
Sbjct: 826 ATE 828


>gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
 gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353]
          Length = 852

 Score =  770 bits (1987), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/845 (40%), Positives = 509/845 (60%), Gaps = 38/845 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            D      I  V + + M+ SY+ YA++VI+ RA+PD+RDGLKPV RRIL+ M+++    
Sbjct: 2   DDSNIFDKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + KCARI G+ MGKYHPHG+++IY AL  +AQDWS R  L++G GNFGSVDGD  AA
Sbjct: 62  DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  +  D+ KDTVDF PN+D + +EP +L +R+PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           TNIP HNL E +DG V +IDN      D ++D L+EI++GPDFPTGA ILGR GI  AY 
Sbjct: 182 TNIPPHNLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAILGRKGIDQAYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG I +R V++IE     +++I+VTE+PY VNKA ++EKIA+LV+EKRI  I +LRDE
Sbjct: 242 TGRGKIKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+ IE ++  +A+V+L QL+++T LQ  F V M+AL   +P+   L  +L  ++
Sbjct: 302 SDRSGMRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLALVDNQPKVLNLKEMLVHYL 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +++VV RRTKY LNKA++RAH+L GL  A+  +DEV+ IIR S N   AR  L++R  
Sbjct: 362 NHQKDVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKR-- 419

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                      S+ Q +AI+++RL  LTGL R+ ++NE + L  
Sbjct: 420 ------------------------FEFSQAQAQAIVDMRLRALTGLEREKLQNEYDELEK 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E   IL+    LLG+I++E+L ++D+    RRT I   + D+ DE  I R+D ++T 
Sbjct: 456 KIAELEAILADEKVLLGVIREEILLIRDKYGDDRRTSIEMDMEDLSDEALIPRKDAIITF 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S LGY+KR+    + +Q RGGKG  G+ + DED + DLF+ STH  ++FF++ G VY+ K
Sbjct: 516 SKLGYIKRMTPDNFHSQNRGGKGIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRLK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG  +IN+L L   E+IT I+P  ED       Y+V AT++G V++   
Sbjct: 576 GYEIPESSRTARGVNIINLLQLQPEEKITAIIPLSEDG---KQHYLVMATRNGIVKKTGF 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            ++  + ++G  A+ L   DE++ V+   +  DI L ++ GQC+RF +  +R   GR S+
Sbjct: 633 DEYKNVRKNGLAAISLREGDELIEVKQTDENEDIFLVSREGQCIRFKLQDVRE-TGRVSM 691

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G++L   D+V+ M I  H++ D    +                            + 
Sbjct: 692 GVIGMNLGDTDEVVGMQI--HSEGDDLLIVSEKGMGKRTPLDEFTVQHRGGKGLRCYKIT 749

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                    +    E+ I+ ++ +G   R  S    +  R+  G++  ++   ++I  + 
Sbjct: 750 EKTGYVIGVKTIKPEEEIMLITTEGIVIRMKSDSISVIGRNTSGVKLINIDADSDI-KVA 808

Query: 843 AVFPV 847
           +V  V
Sbjct: 809 SVAKV 813


>gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 826

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/847 (40%), Positives = 508/847 (59%), Gaps = 37/847 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +ID+      +  ++ +++I++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R A+A+VILNQLY++T +Q  F V M+AL   +P    L+ +L  ++ 
Sbjct: 302 NREGMRICIELRRDANANVILNQLYKHTQMQDTFGVIMLALVNNEPRVMNLLDMLNHYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S   + A+  L+     
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLIA---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+EVQ +AI+++RL  LTGL R+ +  E   L   
Sbjct: 418 ----------------------AFDLTEVQAQAIVDMRLRALTGLEREKLETEYAELMKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E++ ++D+    RRT I     D+  ED I RED+V+T++
Sbjct: 456 IGELKAILADRKLLLGVIKEEIIVIRDKYGDERRTAIGFDEYDISMEDLIPREDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+ +  +++Q RGGKG  G+   +ED++ DLF+ STH  V+FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTVDTFKSQNRGGKGIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT I+P  E        Y+  ATK G V++  ++
Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPIKEYV---QGEYLFMATKKGLVKKTPIT 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    E DI+L TK GQC+RF    +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREEDELIEVKATDNEKDIILVTKYGQCIRFNEKDVRS-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L   D+V+ M +    +         M   +      S +            +  
Sbjct: 692 VRGMNLGDRDEVVGMQLNTQGEHLLIVSEKGMGKRTEMSEFTSQN--RGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +   ++  I+ ++ +G   R       +  R   G++  ++    ++ ++  
Sbjct: 750 KTGNVVGVKAVSEDNEIMIINTEGIIIRMECNSISVLGRITSGVKLINLHDDEKVASIAK 809

Query: 844 VFPVNDN 850
           V   +  
Sbjct: 810 VREASSE 816


>gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 804

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/888 (36%), Positives = 489/888 (55%), Gaps = 88/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   SI +EMQ+SY+ YA++VI+GRA+PD RDGLKP  RRIL+ M ++    +++  K
Sbjct: 3   ENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GEV+GKYHPHG+ A Y+ L RMAQD+S+  +L+EGQGN GSVDGDPPAA+RYTE 
Sbjct: 63  SARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEV 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+K A  +L D+ K++V F PN+D +  EPVVL ++ PN+++NG  GIAVG+ATNI  H
Sbjct: 123 RLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV     A +DN +I    L+  ++GPDFPTG ++     +  +Y  GRGS+ IR  
Sbjct: 183 NLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGRLIESYIKGRGSVTIRAR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IEK     E+IV+ EIPY VNKA+++EKI  LV+++ I  I+DLRDESD++G R+ IE
Sbjct: 243 VSIEKEKRG-ERIVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK   + D +LN LY++T LQ    V  VA+ G +     +  ++K FV  R  VV+ RT
Sbjct: 302 LKANTNPDYVLNALYKHTQLQITMPVMNVAVLGNRLLNLNIRDMIKIFVEHRFGVVINRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L  A  R H++ GL IA  ++D VV IIR S N   A+  LM +             
Sbjct: 362 NYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          ++E Q  AIL+++L++LT L  ++++ E   L   I     +L S
Sbjct: 409 -------------YGITEAQAAAILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGS 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + ++  IIK E   + ++    RRT I    L ++E+ED I  ED ++ ++  GY+KR+P
Sbjct: 456 KEKVYQIIKDETKEIAEKYGIDRRTAIETSELVEIENEDLIKDEDSIIILTKDGYMKRLP 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           + VY+ Q RGG+G   + +++ DFV  +    T   +L  +S G VY  K + +P G   
Sbjct: 516 MDVYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEGGRY 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+GKA +N++S+ +GERI  I+   +     +   ++FAT+ G ++  K   F +   +G
Sbjct: 576 AQGKAAVNLISIAEGERIEQIINTRDF----SGKNLIFATRRGRIKSTKAELFSRPRANG 631

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+KL+  D ++ V   T  +++ L T+ G+ +RF  S +R   GR + GVRGI L   
Sbjct: 632 IRAIKLNEDDIVVGVCLSTGGSNVFLATRNGKAIRFMESDLRHM-GRVASGVRGIRLKPN 690

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+++ + +                                                    
Sbjct: 691 DELVDVVVADPKKN---------------------------------------------- 704

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+T++E+G+GK T    +R+  R G G+    V++  + G +V V     +D 
Sbjct: 705 -------IITITERGYGKATLLERYRLQRRGGGGVINLKVTE--KTGKVVRVLDGEQDDN 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +I+ + KG  IR   N IR+  R   GV +     D +VV  + + + 
Sbjct: 756 VIIFNSKGLSIRFNANAIRVTGRNASGVRLMKLEADAKVVDAQIVGKE 803



 Score = 45.6 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + D D II+++  G + R+P++  +   R  +GV+     + + V  V R    +
Sbjct: 495 LIKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVISIDLKEGDFVKQVVRCMTKD 550


>gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5]
          Length = 850

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/852 (39%), Positives = 519/852 (60%), Gaps = 44/852 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF+PN+D + +EPVVL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E ++  V +IDN      +  ++ L+EI++GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V++IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D S
Sbjct: 242 GRGKIRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG----YKPERFTLIGILK 359
            R+G R+ I+L++ A+A+VILN LY++T LQ  F V M++L       +P+   L  +L+
Sbjct: 302 SREGMRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLE 361

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  +E VV RRT+Y LNKA++RAH+L GL  A+ N+DEV+RIIR S N + A++EL+ 
Sbjct: 362 YYLEHQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELID 421

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L++VQ +AI+++RL  LTGL R+ +  E   
Sbjct: 422 R--------------------------FELTDVQAQAIVDMRLRALTGLEREKLEAEYAE 455

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+ R  LL +I++E+L++ ++    R+T I   + D+  ED I RE+ V
Sbjct: 456 LMEKIRKFQAILADRKLLLRVIREEILAIAEKYGDDRKTSIGYDVYDISTEDLIPRENTV 515

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + ++ LGY+KR+ +  +R+Q RGG+G  G+   ++D++ +L + +TH  ++FF++ G VY
Sbjct: 516 IAMTKLGYIKRMTVDNFRSQNRGGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVY 575

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV+ +P     ARG A+IN+L L  GE+IT ++P  + E      Y++ ATK G V++
Sbjct: 576 RLKVYEIPEAGRTARGTAIINLLQLAPGEKITAVIPLRKYE---EGHYLMMATKKGLVKK 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             + D+  + ++G  A+ L   DE++ V+      DI+L T+ GQC+RF  + +R   GR
Sbjct: 633 TPIKDYENVRKTGLTAIVLRDDDELIEVKATDNNKDIILVTRDGQCIRFKETDVRS-TGR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GVRG++L  GD+V++M +    D         M   +A    +  +           
Sbjct: 692 ASMGVRGMNLTDGDEVVAMQLNTQGDYLLVVSENGMGKRTAMSEFVVQN--RGGKGVKCY 749

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
            +          +   +E  I+ ++ +G   R    D  +  R   G++  ++++     
Sbjct: 750 KITEKTGNVVGAKAVNEENEIMMITTEGIIIRLQCADISVLGRITSGVKMINLTEGVT-- 807

Query: 840 ALVAVFPVNDND 851
            + ++  V D D
Sbjct: 808 -VASIAKVRDKD 818


>gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
 gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B]
          Length = 806

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/889 (36%), Positives = 509/889 (57%), Gaps = 93/889 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL+Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++GV  NK + K ARI G
Sbjct: 6   PIEEELKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EVMGKYHPHG+AAIYD + RMAQDW++R  LI+GQGNFGS+D DPPAA RYTE RL K A
Sbjct: 66  EVMGKYHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL+D+ K+TV+   N+DGS +EP VL +++PN+L NG  GIAVGM TNIP HN+ E+V
Sbjct: 126 EELLEDIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELV 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +G +A+I NP+I ++ LM  I GPDFPTG  I+G++GI+  Y TG+GS  IRG  H+E+ 
Sbjct: 186 NGLIALIKNPEISIEELMNFIPGPDFPTGGEIIGKSGIREMYTTGKGSFTIRGKVHVEEK 245

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              +  IV+TEIP+ ++KA +++KI E   EK  + I D+RDESD++G R+VIE+    +
Sbjct: 246 KKKKN-IVITEIPFNISKADLIKKIVEYA-EKSSLPIKDIRDESDKEGLRIVIEIPNDTN 303

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++I+N LY++T LQS F   ++ ++   KP    L  ++ AFV  R EVV RR +Y   
Sbjct: 304 EEIIINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYYK 363

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +   +AH+L GL  A  ++D ++ +IR S +  +A  EL+                    
Sbjct: 364 QYSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELI-------------------- 403

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q +AI++LRL RLT L    + ++ N L  ++K   +++ +  ++ 
Sbjct: 404 ------DMFNFTETQAKAIVDLRLGRLTKLEISKLIDDYNDLVNKMKVEKELIENDQKVY 457

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
             I +EL ++K E    R++ I++         + + I  +++V++++  GY+K + L  
Sbjct: 458 EKIIEELEAIKSEYGDSRKSIILDHEERKIEFNELELIPDKEVVLSLTKKGYLKMMSLDT 517

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           ++ QRRGGKG +G  + D+D + ++     H   LFF+S G VY    +++   S  +RG
Sbjct: 518 FKTQRRGGKGVTGSNLMDDDAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRG 577

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           + +   L++ Q E+I T++             + F TK+G  +R  L +F  IN  G  A
Sbjct: 578 RQIAKYLNIGQDEKILTMLSVDNF-----EGELFFVTKNGKAKRTSLKEFENINSRGMKA 632

Query: 676 MKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           +  D  D ++SV +    +  IL+ TK G C+RFPIS +R   GRN++GV GI L+  D 
Sbjct: 633 ITFDGDDLLVSVQKIDNPDQTILIATKNGLCIRFPISEVRTM-GRNAMGVIGIRLSNDDA 691

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+S ++++                                                    
Sbjct: 692 VVSSSLLMDD-------------------------------------------------- 701

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E ++LTV+ KG+GK T +  +RI  R G GI+    S I++ G +V V  V  N+ ++
Sbjct: 702 --EHYLLTVTSKGYGKLTETSQYRIQKRGGLGIKNI--SDISKAGHIVGVTHVLGNENMM 757

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + +  G  +++ ++ +R   R TKGV + + ++ + +     IR  + V
Sbjct: 758 IFTKNGMTLKINLDSLRPLGRVTKGVKLVNLSEGDEIADFAVIRGEDDV 806


>gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
 gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501]
          Length = 811

 Score =  769 bits (1985), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/844 (41%), Positives = 527/844 (62%), Gaps = 38/844 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E +++  TSV+I +EM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL+ M Q+G+  N
Sbjct: 2   PELKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI GEV+GKYHPHG+ A+YD + RMAQ++S R +L++G GNFGSVDGD  AA 
Sbjct: 62  KSHKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  LL D+ KDTVDF+PN+D + +EP VL +R PN+L+NG  GIAVGM+T
Sbjct: 122 RYTEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMST 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+DG +A+IDNPD+D+  LM+II+GPDFPTG +I+GR GIK A+ TG+G +
Sbjct: 182 NIPPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIMGRKGIKKAFETGKGKV 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R  + IE+   +RE+I+V E+PYQVNKA ++EK A LVR+  +  IADLRDESDR G 
Sbjct: 242 KVRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGM 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+L++ A+  ++LN+L+++T LQ  F + M+AL   +PE  +L  +L+ ++  ++EV
Sbjct: 302 RISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVDGEPEVLSLKEVLQHYLEHQKEV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRTKY L+KA+ R H+L GL  A  N+D VV+ IR S +   A+  L+          
Sbjct: 362 VTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLIS--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L++ Q +AIL +RL RLTGL  + I +E   L  EI+   
Sbjct: 413 -----------------DFDLTKKQAKAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLK 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL+S  +LL IIK E+L +K++    RRT+IV+  +D+  ED I  E++++T++   Y+
Sbjct: 456 SILASEEKLLDIIKDEILVLKEKYKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PL  YR+Q RGG+G  G+    +D V  L+  STH  +LFF++ G  Y+ K +++P 
Sbjct: 516 KRIPLDTYRSQHRGGRGIIGINPDAKDSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPD 575

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S QA+G A+IN+L +   ER+T ++P  + +    + Y++  T+ G V+R +L +F   
Sbjct: 576 ASRQAKGTAIINLLDMEPNERVTAVIPVEDFDL---DDYLLMVTEQGIVKRTELQEF-NT 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +G IA+ L   DE++ V   T + DI+L T+LG  +RF  S +R   GR + GV+GI 
Sbjct: 632 NYTGLIALDLQQNDELIEVRLTTGQEDIILGTELGLAIRFNESEVRSM-GRTARGVKGID 690

Query: 729 LAKGDQVISMAIVLHADADYDERIC-YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           LA  D+V+   I+             Y K     +        +       +   G ++ 
Sbjct: 691 LASQDKVVGADIIKDGGKLLVVTDKGYGKQTPLNKYRRQSRAGKGLLTIKRTDKNGKLTA 750

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +  E   ++  ++ +S++G   R S  +   ++R+ +G+    + + +    +V++  +
Sbjct: 751 LKVVE---EDDEVMLISKEGIVIRMSVSEISSTSRNTQGVNLMSLVEGDR---VVSLAHI 804

Query: 848 NDND 851
            D D
Sbjct: 805 EDED 808


>gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 835

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/849 (40%), Positives = 511/849 (60%), Gaps = 37/849 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRILF M ++G   +
Sbjct: 2   DEHIFDKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY+AL ++AQD++ R  L++G GNFGS+DGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+GKDTVDF PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   + +IDN      D  +D LMEI++GPDFPTGA ILG++GI+ AY T
Sbjct: 182 NIPPHNLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATILGKSGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R VS I      + +I++TE+PY VNKA +++KIAELV++K+I  I  + D+S
Sbjct: 242 GRGKIRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           + QG RV IEL+R  +A+VILNQLY++T LQ  F VNM+AL   +P+   L  +L  ++ 
Sbjct: 302 NMQGIRVSIELRRDVNANVILNQLYKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLE 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA++RAH+L GL IA+ N+DEV+ IIR S +   A+++L++R   
Sbjct: 362 HQEEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ I  E N L   
Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRTLTGLEREKIEAEYNELMKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LL +I++EL  + D+    RRT I     D+  ED I  E  V+T++
Sbjct: 456 IDELKAILADNKKLLMVIREELSIIMDKYGDDRRTAIGYDEFDISMEDMIPNESTVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGY+KR+    +R+Q RGG+G  G+   D+D++ D+ + +TH  VLFF++ G VYK K 
Sbjct: 516 NLGYIKRMTPDNFRSQNRGGRGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N+L+L  GE+I+ I+P    +   +N Y+  ATK G V++    
Sbjct: 576 YEIPEAGRTARGTAIVNLLTLQAGEKISAIVPV---DGIKDNEYLFMATKQGIVKKTYCK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  I ++G  A+ L   DE++ V+      +I L TK G C+RF  + +R   GR+++G
Sbjct: 633 EYANIRKTGIQAITLRDNDELIEVKATDSTKEIFLVTKYGYCIRFKETDVRP-TGRSAMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+++ +GD+V+ M +    D         +   +        +           + + 
Sbjct: 692 VIGMNILEGDEVVGMQLNTQGDTLLIVSENGLGKRTPIEEFNLQNRGGKGVKCYKINEKS 751

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       +E  I+ ++ +G   R          R   G++  ++    ++  +  
Sbjct: 752 GNVIGVKAVSNTRE--IMLITTEGIIIRMEVAGISTLGRITSGVKLINLDDGVKVAKVAK 809

Query: 844 VFPVNDNDQ 852
           V   + +D+
Sbjct: 810 VREEDVSDE 818


>gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 718

 Score =  768 bits (1983), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/716 (49%), Positives = 487/716 (68%), Gaps = 13/716 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MAKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG I +R  +
Sbjct: 187 LTEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYVRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            IE      RE IVV EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T +Q  F +NMVAL+  +P+  TL   L+AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSQTQMQVSFGINMVALHQGQPKLLTLKECLEAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLAIA+AN+D ++ +IR +P P  A+  L+  +W   ++  +++ 
Sbjct: 367 IFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             + IL S  RL+ +I++EL++++++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ALIFILQSPERLMEVIREELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++
Sbjct: 547 GYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  S  ARG+ +IN+L L   ERIT I+P  E     N   V  AT  G V++  L++F
Sbjct: 607 LPEASRGARGRPIINLLPLEADERITAILPVREYAEGVN---VFMATASGTVKKTALTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            +   +G IA+ L+  DE++ V+     ++++L +  G+ VRF   A+R   GR +
Sbjct: 664 SRPRAAGIIAVNLNDGDELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAM-GRTA 718



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 6/140 (4%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R       E       + +  N ++   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 503 REELIAIREQFGDARRTEITANTADINIEDLIEQEDVVVTLSHQGYVKYQPLSDYEAQRR 562

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            GKG  A  + + + I  L      N +D I+  S +G +  + V ++  ASR  +G  I
Sbjct: 563 GGKGKSAARIKEEDFIERL---LVANTHDTILCFSSRGRMYWMKVYQLPEASRGARGRPI 619

Query: 883 FS---TAKDERVVSVERIRE 899
            +      DER+ ++  +RE
Sbjct: 620 INLLPLEADERITAILPVRE 639



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 70/219 (31%), Gaps = 13/219 (5%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    R+   A   D   E    +   QE+ ++  +  G     P+S       R  
Sbjct: 510 REQFGDARRTEITANTADINIE----DLIEQEDVVVTLSHQGYVKYQPLSDYEA-QRRGG 564

Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G     + + D +  + +    D           Y   +        G           
Sbjct: 565 KGKSAARIKEEDFIERLLVANTHDTILCFSSRGRMYWMKVYQLPEASRGARGRPIINLLP 624

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              +  I+         +   +   +  G  K+T+  +F    R+  GI A ++   N+ 
Sbjct: 625 LEADERITAILPVREYAEGVNVFMATASGTVKKTALTEFSR-PRAA-GIIAVNL---NDG 679

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             L+ V   + ND+++L S  G ++R   + +R   R  
Sbjct: 680 DELIGVDLTDGNDEVMLFSAAGKVVRFKEDAVRAMGRTA 718


>gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
 gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758]
          Length = 844

 Score =  768 bits (1982), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/847 (40%), Positives = 508/847 (59%), Gaps = 37/847 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M+  Y+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +  D+ KDTVDF PN+D + +EP VL +R+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +ID+      +  ++ +MEII+GPDFPTGA ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R VS+IE     + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R+G RV IEL+R  + +V+LNQLY++T LQ  F V M+AL   +P+  +L+ IL  ++ 
Sbjct: 302 SREGMRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMSLLEILNHYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E+VV RRTKY LNKA +RAH+L GL IA+ N+DEV++IIR S   + A+ ELM R   
Sbjct: 362 HQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ +  E   L  +
Sbjct: 419 -----------------------FNLSDAQSQAIVDMRLRALTGLEREKLETEYAELEKK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E+L + ++    RRT I     D+  ED I RED+V+T++
Sbjct: 456 IAEYKAILADRKLLLGVIKKEILVISEKYGDDRRTAIGFDEYDISTEDLIPREDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            +GY+KR+    +++Q RGGKG  G+   DED+V +LF+ +TH  ++FF++ G  Y+ K 
Sbjct: 516 KMGYIKRMSNDTFKSQNRGGKGIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     +RG A+INIL L   E+IT ++P  + +      Y+  ATK G V++  + 
Sbjct: 576 YEIPEAGRTSRGTAIINILQLQPDEKITAMIPIKDFK---EGDYLFMATKKGLVKKTPIL 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D+  + ++G  A+ L   DE++ V+    E D++L T+ GQC+RF  S +R   GR S+G
Sbjct: 633 DYANVRKTGLAAITLREDDELIEVKITDDERDVILVTQYGQCIRFHESDVRS-TGRTSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++L+  D+V++M +    +         M   +      + +            +  
Sbjct: 692 VRGMNLSDRDEVVAMQLDAQGEELLIVSEKGMGKRTRMEEFTAQN--RGGKGVKCYKITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +    +  I+ ++  G   R       +  R   G++  ++ +  E+ ++  
Sbjct: 750 KTGNVVGAKAVGPDDEIMIINTDGIVIRMECAGISVLGRITSGVKLINLKEHEEVASIAK 809

Query: 844 VFPVNDN 850
           V   +  
Sbjct: 810 VRRASGE 816


>gi|260198990|ref|ZP_05766481.1| DNA gyrase subunit A [Mycobacterium tuberculosis T46]
 gi|289441373|ref|ZP_06431117.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
 gi|289414292|gb|EFD11532.1| DNA gyrase, A subunit [Mycobacterium tuberculosis T46]
          Length = 783

 Score =  767 bits (1981), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/854 (38%), Positives = 477/854 (55%), Gaps = 93/854 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L K  +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKVNERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI+    D+ DED I R
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIAR 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 514 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQ 573

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    ERI  ++         +  Y+V AT++G
Sbjct: 574 GRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYT---DAPYLVLATRNG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KL+DF      G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +
Sbjct: 631 LVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEAL 690

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++S+ +V                                
Sbjct: 691 RPM-GRATSGVQGMRFNIDDRLLSLNVVREGT---------------------------- 721

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    ++L  +  G+ KRT+  ++ +  R GKG+      
Sbjct: 722 -------------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYD 756

Query: 834 KINEIGALVAVFPV 847
           +    G LV    V
Sbjct: 757 RR--RGRLVGALIV 768



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 87/242 (35%), Gaps = 15/242 (6%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                  R+  IA   D  DE L       E+ ++  T+ G   R      R    R   
Sbjct: 488 DRHGDDRRTRIIAADGDVSDEDLIAR----EDVVVTITETGYAKRTKTDLYRSQK-RGGK 542

Query: 723 GVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           GV+G  L + D V    +    D       +   Y                +  +     
Sbjct: 543 GVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAF 602

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E  I++           +++  +  G  K++   DF  SNRSG GI A ++       
Sbjct: 603 QPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF-DSNRSG-GIVAVNLRD---ND 657

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897
            LV     + +D ++LVS  G  IR    +  +R   RAT GV       D+R++S+  +
Sbjct: 658 ELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVV 717

Query: 898 RE 899
           RE
Sbjct: 718 RE 719



 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 21/229 (9%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKG 732
           LD+ DE++++   ++  DI    + G      I  I+         R     R  +L + 
Sbjct: 398 LDALDEVIALIRASETVDI---ARAGLIELLDIDEIQAQAILDMQLR-----RLAALERQ 449

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
             +  +A +    AD ++ +   +      R    +  +       + +     +   ++
Sbjct: 450 RIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDED 509

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +E  ++T++E G+ KRT +  +R   R GKG++   +    +   +VA F V     
Sbjct: 510 LIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL----KQDDIVAHFFVCSTHD 565

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERI 897
           +IL  + +G + R    ++  ASR  +G  + +      +ER+  V +I
Sbjct: 566 LILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI 614



 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 82/244 (33%), Gaps = 14/244 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  T+ G  +R K   +    R   G     L   D +     C+  + IL  T  G+ 
Sbjct: 517 VVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRV 576

Query: 706 VRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            R     +   A R + G    +L      +++    ++          +         +
Sbjct: 577 YRAKAYDL-PEASRTARGQHVANLLAFQPEERI--AQVIQIRGYTDAPYLVLATRNGLVK 633

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD--FRIS 820
           +    D +   S    +    +  E     L   +  +L VS  G   R S+ D   R  
Sbjct: 634 KSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSADDDLLLVSANGQSIRFSATDEALRPM 693

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R+  G++       N    L+++  V +   +++ +  G   R  + E  +  R  KGV
Sbjct: 694 GRATSGVQGMRF---NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGV 750

Query: 881 -VIF 883
             + 
Sbjct: 751 LTVM 754


>gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 774

 Score =  767 bits (1980), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/855 (40%), Positives = 512/855 (59%), Gaps = 88/855 (10%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFG
Sbjct: 1   GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG
Sbjct: 61  SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI 
Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIH 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TG+GSIV+R  + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  
Sbjct: 181 KAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITA 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDES+R+G R VIE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL
Sbjct: 241 VRDESNREGVRFVIEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQIL 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            A++  ++EVVVRRT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM
Sbjct: 301 DAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELM 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            +                            LSE QT+AIL++RL RLTGL RD I++E +
Sbjct: 361 SK--------------------------FKLSERQTQAILDMRLRRLTGLERDKIQSEYD 394

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVRED 537
            L   I +  DIL+   R+  IIK EL  VK +    RRT ++   +L +EDED I   D
Sbjct: 395 DLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESD 454

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +++T+S+ GY+KR+    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G 
Sbjct: 455 VLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGR 514

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ K + +P     A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V
Sbjct: 515 VYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIV 572

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  + +F  I ++G  A+ L   DE+++V     + DI++ TK G  VRF  SA+R  +
Sbjct: 573 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 632

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV+G++L +GD V+  +                                      
Sbjct: 633 -RIATGVKGVNLREGDTVVGAS-------------------------------------- 653

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                          L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N 
Sbjct: 654 ---------------LITDQDEVLVITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN- 697

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SV 894
            G L  +  V  ++ +++++D G +IR  +  I    RAT GV +    +D ++V   +V
Sbjct: 698 -GLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTV 756

Query: 895 ERIRESEIVDEAEST 909
               + E+  E E+ 
Sbjct: 757 AVAEKEEVGTENETE 771


>gi|269217829|ref|ZP_06161683.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269212764|gb|EEZ79104.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 862

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/921 (35%), Positives = 496/921 (53%), Gaps = 102/921 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +         I  V +  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M
Sbjct: 1   MSEDTV----YNHGLIKGVDLQREMEKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   +  + K A++ G+VMG YHPHG+ AIYD + R+ Q WS+R  L+ GQGNFG+ 
Sbjct: 57  YDGGYRPDNSFSKSAKVVGDVMGHYHPHGDVAIYDTVVRLVQPWSMRYPLVAGQGNFGTP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
                AA RYTE R+   A  ++ D+ + TVDF PNYDGS  EP VL +R+PN+LVNG  
Sbjct: 117 GDLGAAAPRYTEVRMAPLAMEMVRDIKEQTVDFEPNYDGSLLEPTVLTSRFPNLLVNGSE 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTG 236
           GIAVGMAT IP HNL EV  G    ++NPD   + L+    + I+GPDFPTGA+ILG  G
Sbjct: 177 GIAVGMATRIPPHNLREVAAGVQWYLENPDATKEELLAALIQRIKGPDFPTGALILGTRG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TG GSI  R V  +++    R+ +VVT++PYQVN   +L+K+ E +++ R+  I
Sbjct: 237 IEDMYRTGHGSITQRAVVEVDEI-HGRQCLVVTDLPYQVNPDRLLDKMVEGIKDGRLPGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           AD+RDE S R G R+V+ LK+ A A V+LN LY++T LQ+ F  NM+AL    P   +L 
Sbjct: 296 ADIRDETSGRAGQRIVVVLKKDAVAKVVLNNLYKHTQLQNNFPANMLALVDGVPRTLSLD 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
           G ++ +V F+ EV++RRT+Y L +A  R H+L G   A+  LD V+ +IR S   + AR 
Sbjct: 356 GFVRHWVTFQMEVILRRTEYRLGEALKRLHILGGYLKALDQLDAVIALIRSSQTVDLART 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + + E Q  AILE++L RL  L R  I +
Sbjct: 416 GLM--------------------------DLLEIDEDQANAILEMQLRRLAALERQKIID 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E       + +  DI++   R   II +EL ++ D+    RRT I+    +M  ED I  
Sbjct: 450 EYEEKAALVADYKDIIAKPERQRAIIGEELGAIVDKYGDDRRTTILPFDGEMSVEDLIPE 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  G++KR   S YRAQ RGGKG  G  +R +D V    + STH   LFF++L
Sbjct: 510 EDVVVTITRGGFIKRTKTSEYRAQHRGGKGIKGASLRGDDVVEHFDVGSTHEWHLFFTNL 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + +P     A+G+ + N+L+   GE I + +     +      Y+V AT  G
Sbjct: 570 GRVYRIKGYEIPEAGRDAKGQHIANLLAFQPGETIASTITLKGYD---QAQYLVLATADG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSR----DEILSVETCTQENDILLTTKLGQCVRFPIS 711
            V++ +LSD+      G IA+KL       D +++     +++D+LL ++ G  +RF  +
Sbjct: 627 LVKKTRLSDYDSPRTGGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLRFKAT 686

Query: 712 A--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR S GV G+   +GD +++M +V                            
Sbjct: 687 DEALRPM-GRPSSGVTGMKFREGDSLLTMRVVRD-------------------------- 719

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +  V+E GF KRTS  ++RI  R+G GI+ 
Sbjct: 720 ---------------------------NAEVFVVTEGGFAKRTSVDEYRIQGRAGLGIKV 752

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +++  E G LV    + + + ++++ + G ++R    E+    R T+GV        +
Sbjct: 753 AKLTE--ERGDLVGAL-ITEGEDVMVIMESGKVMRASAAEVSKTGRNTQGVTFARPDGGD 809

Query: 890 RVVSVERIRESEIVDEAESTE 910
           R++++ R  E+ I  E   ++
Sbjct: 810 RIIAIARNIETTIEAEVGQSD 830



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 10/245 (4%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  LS Y + R GG     +          +                     +
Sbjct: 623 TADGLVKKTRLSDYDSPRTGGLIAIKLRENGNGTDHVVAACLVDEDDDLLLVSRKGMSLR 682

Query: 603 VWRLPIGSP-QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
                       R  + +  +   +G+ + T+          +N  V   T+ G  +R  
Sbjct: 683 FKATDEALRPMGRPSSGVTGMKFREGDSLLTMRVVR------DNAEVFVVTEGGFAKRTS 736

Query: 662 LSDFIQINRSG--KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           + ++    R+G      KL      L     T+  D+++  + G+ +R   + +    GR
Sbjct: 737 VDEYRIQGRAGLGIKVAKLTEERGDLVGALITEGEDVMVIMESGKVMRASAAEV-SKTGR 795

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV       GD++I++A  +    + +      +  +A   + S       +  + +
Sbjct: 796 NTQGVTFARPDGGDRIIAIARNIETTIEAEVGQSDGEGENAADTVASVVEVSTETATDHA 855

Query: 780 SVEGN 784
           +  G 
Sbjct: 856 NQAGA 860


>gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
 gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656]
          Length = 852

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/850 (38%), Positives = 512/850 (60%), Gaps = 39/850 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           D++    I  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++G   +
Sbjct: 2   DDKIFDQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQDWS+R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  L+ D+GK+TVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HNL EVV+  V +IDN     +  +D L+++++GPDFPTG +ILG +GIK AY TG
Sbjct: 182 NIPPHNLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGTSGIKEAYRTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R V++IE     + +IVVTE+PY VNKA ++EKIAEL ++K+I  I DLRDE+ 
Sbjct: 242 RGKIRVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETS 301

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+V+EL+R  +  V+LN L+++T LQ  F V  +AL   +P+   L  +L  ++  
Sbjct: 302 REGMRIVVELRRDVNPSVVLNLLFKHTQLQDTFGVINLALVNGEPKVLNLYDLLNYYLIH 361

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +++VV RRTK+ L+KA  RAH++ GL IA  N+DEV+ IIR S   + A+  LM+R    
Sbjct: 362 QKDVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMER---- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L++ Q++AI+++RL  LTGL R+ +  E   L  +I
Sbjct: 418 ----------------------FGLTDEQSQAIVDMRLRALTGLEREKLEAEYKELMAQI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +   IL+   +LLG+I++E++++ D+    R+T I     DM  ED I   + V+T++ 
Sbjct: 456 AQLKAILADEKKLLGVIREEIIAIADKYGDDRKTEIGYDEYDMSMEDLIPETNTVITMTK 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +GY+KR+    ++AQ RGGKG  G+   ++D++ ++ + ++H  ++FF++ G VY+ K +
Sbjct: 516 VGYIKRMSTDNFKAQHRGGKGIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAY 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  S  +RG A+IN++ L   E+IT ++P  E E   ++ Y+  AT++G V++  + D
Sbjct: 576 EIPEASRTSRGTAIINLIPLQPDEKITAMIPIKEYE---DDKYLFMATRNGIVKKTPIKD 632

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  I ++G  A+ L   D+++ V+      DILL TK GQC+RF  + +R   GR ++GV
Sbjct: 633 YENIRKNGLAAINLREDDKLIEVKVTDNSEDILLFTKFGQCIRFKETDVRS-TGRTTMGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G++LA  D +I+M      +A        +   +  R                  +   
Sbjct: 692 IGMNLAPNDVIIAMQTASMGEAVLLVSSNGLGKRT--RIDEFTTQNRGGKGVKCYKITEK 749

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  +    +  ++ ++ +G   R    D  +  R   G++  ++ +     ++ ++
Sbjct: 750 SGNLVGVKSVENDDELMLITTEGIIIRIQVSDVTVLGRITTGVKLINLKEGV---SVASI 806

Query: 845 FPVNDNDQII 854
             V ++  ++
Sbjct: 807 AKVVEDKTLM 816


>gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 764

 Score =  767 bits (1979), Expect = 0.0,   Method: Composition-based stats.
 Identities = 410/746 (54%), Positives = 527/746 (70%), Gaps = 14/746 (1%)

Query: 1   MTEHIISSDEEEEKGIT---------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M E       E +  I          SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKP
Sbjct: 1   MNET--PETPENDDEIPAARPVFDGPSVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKP 58

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRRI++ M + G+  +K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI
Sbjct: 59  VHRRIIYSMYEKGITHDKTYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLI 118

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K A F+  DL K+TV+F  NYDG  +EP VL AR+
Sbjct: 119 DGQGNFGSMDGDSAAAMRYTESRLDKVASFMTSDLDKETVNFIDNYDGKEREPTVLPARF 178

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           PN+LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+  + L+E I GPDFPTG ++
Sbjct: 179 PNMLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIM 238

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           LGR G + AY  GRGS+++R  + +E+   DR  I++ EI YQVNKA+M+EKIAE VREK
Sbjct: 239 LGRAGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREK 298

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           +I  IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F  NM+ALNG +PE+
Sbjct: 299 KIEGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNMLALNGGRPEQ 358

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            TL   L  F+ FRE+VV RRT +LL KAR+R+H+L GLA+AV N+DEVV  IR S +  
Sbjct: 359 LTLRKFLTYFIDFREDVVARRTAFLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAA 418

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            AR +LM R W A  I   I LIDD ++T   DGT  LSE Q RAILELRL RLT +G  
Sbjct: 419 EAREKLMTRRWPAESILPYIALIDDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVK 478

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           ++ +EL  L  +IKE L+IL SR R++ II  EL  VKD+   PRRT IV+   DM+DED
Sbjct: 479 EVTDELEELAKKIKEYLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDED 538

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  ++ED VT LF+ +THT +LF
Sbjct: 539 LIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLF 598

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G VYK K WRLP GS  ++GKA++NIL +  G  I  IMP   DE+ W++L VVFA
Sbjct: 599 FTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAEWDDLQVVFA 658

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRF 708
           T  G VRRNKLSDF  + R+GKIAMK +       +++    + ++D++L T  G+ +RF
Sbjct: 659 TSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHAETTLINARIASNDDDVMLVTNSGRAIRF 718

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQ 734
           P + +RVF  R SVGVRGI L   ++
Sbjct: 719 PATDVRVFNSRASVGVRGIKLNGDEK 744



 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 14/235 (5%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F    R+  +    D  DE L       E+ ++  T  G   R P+   R    R   
Sbjct: 517 DQFAVPRRTEIVDWSGDMDDEDLIAR----EDMVVTVTSGGYIKRTPLVDFRS-QRRGGK 571

Query: 723 GVRGISLAKGDQVISMAIVLH------ADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GV G+   + D V ++ +            D          +    R   G         
Sbjct: 572 GVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGSRTSKGKAIVNILPI 631

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   I      E +  +  ++  +  G  +R    DF    R+GK   A      +
Sbjct: 632 PVGVSIAAIMPVDRDEAEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGK--IAMKFEDDH 689

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDER 890
               L+     +++D ++LV++ G  IR P  ++R+  SRA+ GV       DE+
Sbjct: 690 AETTLINARIASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDEK 744



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y E +   + + +       + ++  ++   + +     +   ++L  +E  +
Sbjct: 487 LAKKIKEYLEILGSRERIMSIISDELAEVKDQFAVPRRTEIVDWSGDMDDEDLIAREDMV 546

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +TV+  G+ KRT   DFR   R GKG+      + +    +  +F  N + Q++  +  G
Sbjct: 547 VTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQTKEEDV---VTTLFVANTHTQLLFFTTDG 603

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            + ++    +   SR +KG   V I        + ++  +   E  
Sbjct: 604 MVYKLKTWRLPQGSRTSKGKAIVNILPIPVGVSIAAIMPVDRDEAE 649


>gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 836

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/903 (36%), Positives = 512/903 (56%), Gaps = 88/903 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +  +   + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL D+ KDTVDF  NYDG  +EP VL A +PN+L NG  GIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP+HNL E++ G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNV 252

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR    IE+    R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+RDES R+G 
Sbjct: 253 VIRSKVEIEQLQT-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P    +   L+ ++  + +V
Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VR+TK++LNK ++R H+L GL IA  N+DEVV II+ S N + A   L  +        
Sbjct: 372 LVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q +A+L++RL  L+ L  + ++ E   L   I+ C 
Sbjct: 424 ------------------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCK 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +L+ +   L IIK+EL  + D+    RR+ I  +   +++DE  I  E++V+T+S  GY
Sbjct: 466 KVLADQKLQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P
Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G    +G   +N++ + + ERI +++         ++ Y  F TK+G V+R  L++FI 
Sbjct: 586 YGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNGIVKRTSLNEFIN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +GK+A+  D  D + SV      ++I + +  G  VRF  + +RV + R + GV GI
Sbjct: 642 ILSNGKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL KG+ V  ++   +                                            
Sbjct: 701 SLNKGEFVNGLSTSSNG------------------------------------------- 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+V + G GK TS   +R++ R+ KG++   V+     G +V    V
Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDR--TGPVVTTTTV 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             N+ ++++S  G ++R  + E+    + T GV +     +ER+  V   +E     E +
Sbjct: 766 FGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDKEMQ 825

Query: 908 STE 910
             +
Sbjct: 826 LED 828


>gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni]
          Length = 844

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/913 (38%), Positives = 535/913 (58%), Gaps = 122/913 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  E  VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RR  + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E I  I+P  + +    +  + F TK+G V+R  LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEEIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  D +++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDGLVTAIIVQRDEDEIFVSGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKVLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVV 881
            IR A R T GV+
Sbjct: 816 SIRKAGRNTSGVI 828



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 103/290 (35%), Gaps = 76/290 (26%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 386 IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 436

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 437 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 496

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------- 826
            ++L   E  ++T++ +G+ KR  S  +    R GKG                       
Sbjct: 497 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT 556

Query: 827 ------------IRATDVSKINEIGA---LVAVFPVNDNDQIILV--------------- 856
                       ++   + + +       +V +  +   ++I+ +               
Sbjct: 557 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEEIMAIIPTTDFDESKSLCFF 616

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  G + R  ++E   IR       GV   +  +++ +V+   ++  E  
Sbjct: 617 TKNGIVKRTNLSEYQNIRSV-----GVRAINLDENDGLVTAIIVQRDEDE 661


>gi|302796304|ref|XP_002979914.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
 gi|300152141|gb|EFJ18784.1| hypothetical protein SELMODRAFT_111960 [Selaginella moellendorffii]
          Length = 880

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/921 (37%), Positives = 507/921 (55%), Gaps = 88/921 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                 V +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K + 
Sbjct: 19  NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVD 121
           KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ            +SLR  LI G GNFGS+D
Sbjct: 79  KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFSSSFISFSLRSPLISGHGNFGSLD 138

Query: 122 GDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           GDP AA RYTECRL   +  + L DL  DTVDF PN+DGS +EPVV+ AR PNVL+NG  
Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD   A+I NP+  ++ LME + GPDFPTG  ILG +GI +A
Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADA 258

Query: 241 YATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + TGRG+I +RG +  E  +    R  IV+TEIPY  NK+ ++ KIAELV  K +  ++D
Sbjct: 259 FRTGRGTITVRGKADFEELEGKISRSAIVITEIPYGTNKSTLVAKIAELVNSKMLEGVSD 318

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESDR G R+V+ELKRGA A V+LN LY++T+LQS FS N+V +   +PE F++  +L
Sbjct: 319 IRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLL 378

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + F+ FR  VV RR +  L +A  R H+L G    +  LD+VV++++ + +  +A + L 
Sbjct: 379 EIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQ 438

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             LS  Q  A+L + L R+T L R+ I  E N
Sbjct: 439 K--------------------------DFGLSAAQAEALLGMPLRRITSLERNKILEEHN 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537
           SL  +  +  ++LS++ R+L ++++E L++K+E  +PRRT + E     +++ D I   +
Sbjct: 473 SLLAQASDLRELLSNKQRVLKVVEKEALALKNEFGSPRRTVLEEYGDGRIDNIDVIPNNE 532

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             +T+S  GY+KR+    + AQRRG  G+SG  M+  D + D F+   H  VL FS  G 
Sbjct: 533 SFLTLSEKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGV 592

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  + +++P  S  + G  +I +LS+  GERIT+I P  E      + ++V  T  G +
Sbjct: 593 VYSFRAYQVPECSRTSTGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYI 649

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R +L  F  I   G +A++L   DE+  V   TQ + I + ++ G  ++ P    R   
Sbjct: 650 KRTELPAFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMR 708

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + G+R + + +GD++ ++ IV  +       +     +  + +              
Sbjct: 709 -RGARGLRAMRIKEGDEIAAIDIVPGSVWKESPTLLCTHVLCNRSKASEA---------- 757

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                ++L VSE G  KR     F     +  G+        + 
Sbjct: 758 --------------------PWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDR 797

Query: 838 IGALVAVFPV-------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
              L ++F V         N++I++ +  G   R  V EI I SR  +G+ +     D++
Sbjct: 798 ---LASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDK 854

Query: 891 VVSVERIRESEIV--DEAEST 909
           V SV  +  S+    DE  S 
Sbjct: 855 VKSVSVVAASDSPAHDEPPSD 875


>gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
 gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54]
          Length = 847

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 350/855 (40%), Positives = 527/855 (61%), Gaps = 38/855 (4%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + +E  ++    +SI  E+Q SYL YA++VI+GRA+PD+RDGLKPVHRR LF M ++G
Sbjct: 1   MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           + +N+ YVK ARI G+V+GKYHPHG+ A YD + RMAQ++SLR  L++GQGNFGS+DGD 
Sbjct: 61  IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ +    ++ DL KDTVDF PNYD S  EP V+ +R PN+L+NG  GIAV
Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HN+ EV+DG +A+ D+P+I +  LM +I GPDFPTGA I GR+GI+ AY TG
Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYICGRSGIREAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           RG +V+R ++H+E +    RE I++TEIPYQ NKA ++EKIA LV++K+I  I+++RDES
Sbjct: 241 RGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDES 300

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G RVVIELKR  +++V++NQLY+ T +Q  F + ++A+   KP    L  IL+ F+ 
Sbjct: 301 DRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNKPMILNLKQILEHFLV 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R+ VV RRT + L KA ++AH+L GL +A+ NLDEVV +I+ + NP  A+  L++R   
Sbjct: 361 HRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVER--- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS +Q + IL++RL RLTGL R  I ++  ++  E
Sbjct: 418 -----------------------FELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQE 454

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I     IL+  + +LGIIK E L +++     RRT I++ + D+  ED I  EDM VTV+
Sbjct: 455 ITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMAVTVT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H G++KR P ++YR+Q RGGKG SG    +EDF++DL++ ST  + LFF++ G V+  KV
Sbjct: 515 HSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKV 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+    ARGKA++N+L L++ E++  I+P    E    +  ++  TK G +++  L 
Sbjct: 575 YQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQ 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +F +  R GK A+ ++  DEI+       ++ +LL T  G+ + F  S +R   GR + G
Sbjct: 635 EFRRPLRKGKRALTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTM-GRTAAG 693

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRGI+L + D+V+S  +    D+            S               +    S   
Sbjct: 694 VRGITLGEDDEVVSAIVASSNDSILVVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERN 753

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              +    +    E+ I+ +++ G   R +  + RI  RS +G+R  ++    +   +V+
Sbjct: 754 --GDLISAKQVSDEEEIMIIADSGKMIRMNLENVRIIGRSTQGVRLINLEGDEK---VVS 808

Query: 844 VFPV-----NDNDQI 853
           +  V     + +D++
Sbjct: 809 MDTVARDESDLDDEV 823



 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 104/250 (41%), Gaps = 18/250 (7%)

Query: 533 IVREDMVVTV---SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
              ED   T+   +  G +K+  L  +R   R GK    +   DE     L       +V
Sbjct: 610 FEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRALTINEGDEIIGAYLLN--GDDTV 667

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  +S G         +      A   A +  ++L + + + + +       + +N  ++
Sbjct: 668 LLCTSKGKAIHFHESDVRTMGRTA---AGVRGITLGEDDEVVSAI------VASSNDSIL 718

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCV 706
             T++G  +R+ + ++    R GK  + +   +     +S +  + E +I++    G+ +
Sbjct: 719 VVTENGYGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISAKQVSDEEEIMIIADSGKMI 778

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           R  +  +R+  GR++ GVR I+L   ++V+SM  V   ++D D+ +      + +     
Sbjct: 779 RMNLENVRII-GRSTQGVRLINLEGDEKVVSMDTVARDESDLDDEVDGTAVATTELAADV 837

Query: 767 GDTEEITSLK 776
               +++  +
Sbjct: 838 NIIPDVSEDE 847



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 8/168 (4%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           VL         +     +    +    +  E    +  + +   + +   ++L   E   
Sbjct: 451 VLQEITRLKTILADEALILGIIKDEFLEIRETYGDERRTVIIDAVDDLLPEDLIAPEDMA 510

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAVFPVNDNDQIILVSDK 859
           +TV+  GF KR  +  +R  +R GKG+      + + I  L VA       D  +  ++ 
Sbjct: 511 VTVTHSGFIKRNPAALYRSQHRGGKGVSGAKNIEEDFISDLYVASTL----DTFLFFTNY 566

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           G +    V ++ +  R  +G   V +    + E++ ++  +   E  D
Sbjct: 567 GKVFWRKVYQLPLVGRTARGKAIVNLLELDESEKLAAILPVTSFEDED 614


>gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 855

 Score =  766 bits (1978), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/856 (39%), Positives = 505/856 (58%), Gaps = 45/856 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EPNIFDKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + +  +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG  GIAVGMAT
Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E++   V +IDN      D  ++ LMEI++GPDFPTGA ILG+ GI+ AY T
Sbjct: 182 NIPPHNLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE     + +I+VTEIPY VNKA ++EKIAELV++KR+  I DLRDES
Sbjct: 242 GRGKIRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+++LNQL ++T LQ  F VNM+AL   +P+   L  +L  ++ 
Sbjct: 302 NREGMRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLD 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++VV RRTKY LNKA +RAH+L GL  A+  +DEV+RIIR S     A+  LM+R   
Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q +AI+++RL  LTGL R+ + NE   L   
Sbjct: 419 -----------------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+  ++LL +IK+E+  + D+    RRT+I     DM  ED I  ED+VV ++
Sbjct: 456 IAELRGILADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAIT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGY+KR+    +++Q RGGKG  G+   DED++ +L + +TH  ++FF++ G VY+ K 
Sbjct: 516 NLGYIKRMSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N++ L  GE+IT  +P  E +    + ++  ATK+G V+R  + 
Sbjct: 576 YEIPEAGRTARGTAIVNLIQLQPGEKITATVPMKEFD---EDKFLFMATKNGMVKRTPMK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L TK G C+RF  + +R   GR S+G
Sbjct: 633 EYENVRKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVR-ITGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+     D++I M +    +         +   +      S              +  
Sbjct: 692 VIGMKFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTS--QLRGGKGVRCYRITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L  + + I+ ++ +G   +       I  R+  G++  D+    E G +VA
Sbjct: 750 KTGYLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDP--ESGVVVA 807

Query: 844 VFPV------NDNDQI 853
                     ++++++
Sbjct: 808 SIAKVRESSQDEDEEL 823


>gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10]
          Length = 855

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/856 (38%), Positives = 505/856 (58%), Gaps = 45/856 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  + +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EPNIFDKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ WS R +L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + +  +L D+ K+TVDF PN+D + +EPVVL +R+PN+L NG  GIAVGMAT
Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E++   V +IDN      D  ++ LMEI++GPDFPTGA ILG+ GI+ AY T
Sbjct: 182 NIPPHNLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATILGKAGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G I +R V+ IE     + +I+VTEIPY VNKA ++EKIAELV++KR+  I DLRDES
Sbjct: 242 GKGKIRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+++LNQL ++T LQ  F VNM+AL   +P+   L  +L  ++ 
Sbjct: 302 NREGMRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLALVNNEPKVLNLHQMLTYYLD 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +++VV RRTKY LNKA +RAH+L GL  A+  +DEV+RIIR S     A+  LM+R   
Sbjct: 362 HQKDVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q +AI+++RL  LTGL R+ + NE   L   
Sbjct: 419 -----------------------FELSDAQAQAIVDMRLRALTGLEREKLLNEYQELEKR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+  ++LL +IK+E+  + D+    RRT+I     DM  ED I  ED+VV ++
Sbjct: 456 IAELRGILADENKLLTVIKEEIQLISDKYGDDRRTKIGYDEFDMSAEDLIPDEDVVVAIT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           +LGY+KR+    +++Q RGGKG  G+   DED++ +L + +TH  ++FF++ G VY+ K 
Sbjct: 516 NLGYIKRMSSDNFKSQNRGGKGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKA 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N++ L  GE+IT  +P  E +    + ++  ATK+G V+R  + 
Sbjct: 576 YEIPEAGRTARGTAIVNLIQLQPGEKITATVPMKEFD---EDKFLFMATKNGMVKRTPMK 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DI L TK G C+RF  + +R   GR S+G
Sbjct: 633 EYENVRKNGLQAIVLREDDELIEVKATDNTEDIFLVTKKGMCIRFHETDVR-ITGRVSMG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+     D++I M +    +         +   +      S              +  
Sbjct: 692 VIGMKFDSDDEIIGMQMASQGECLLVVSEYGLGKRTPIEEFTS--QLRGGKGVRCYRITE 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L  + + I+ ++ +G   +       I  R+  G++  D+    E G +VA
Sbjct: 750 KTGYLVGAKLVDEGRQIMLITNEGIIIKMRVNTISIIGRNTSGVKLMDIDP--ESGVVVA 807

Query: 844 VFPV------NDNDQI 853
                     ++++++
Sbjct: 808 SIAKVRESSQDEDEEL 823


>gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37]
 gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A
 gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37]
 gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0]
          Length = 836

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/903 (36%), Positives = 511/903 (56%), Gaps = 88/903 (9%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +  +   + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYIGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL D+ KDTVDF  NYDG  +EP VL A +PN+L NG  GIAVGM+T
Sbjct: 133 RYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGIAVGMST 192

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP+HNL E++ G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++
Sbjct: 193 SIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNV 252

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           VIR    IE+    R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+RDES R+G 
Sbjct: 253 VIRSKVEIEQLQT-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIRDESSREGI 311

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+KR    +V+LNQL++ T LQ  F VNM+AL    P    +   L+ ++  + +V
Sbjct: 312 RLVIEVKRDTVPEVLLNQLFKSTRLQVRFPVNMLALVKGAPVLLNMKQALEVYLDHQIDV 371

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VR+TK++LNK ++R H+L GL IA  N+DEVV II+ S N + A   L  +        
Sbjct: 372 LVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLNTK-------- 423

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q +A+L++RL  L+ L  + ++ E   L   I+ C 
Sbjct: 424 ------------------FKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCK 465

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +L+ +   L IIK+EL  + D+    RR+ I  +   +++DE  I  E++V+T+S  GY
Sbjct: 466 KVLADQKLQLKIIKEELQKINDQFGDERRSEILYDISEEIDDESLIKVENVVITMSTNGY 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LFF+  G VY+ +  ++P
Sbjct: 526 LKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G    +G   +N++ + + ERI +++         ++ Y  F TK+G V+R  L++FI 
Sbjct: 586 YGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFCTKNGIVKRTSLNEFIN 641

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +GK A+  D  D + SV      ++I + +  G  VRF  + +RV + R + GV GI
Sbjct: 642 ILSNGKRAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLS-RTARGVFGI 700

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL KG+ V  ++   +                                            
Sbjct: 701 SLNKGEFVNGLSTSSNG------------------------------------------- 717

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L+V + G GK TS   +R++ R+ KG++   V+     G +V    V
Sbjct: 718 ----------SLLLSVGQNGIGKLTSIDKYRLTKRNAKGVKTLRVTDR--TGPVVTTTTV 765

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             N+ ++++S  G ++R  + E+    + T GV +     +ER+  V   +E     E +
Sbjct: 766 FGNEDLLMISSAGKIVRTSLQELSEQGKNTSGVKLIRLKDNERLERVTIFKEELEDKEMQ 825

Query: 908 STE 910
             +
Sbjct: 826 LED 828


>gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis]
 gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
 gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114]
          Length = 911

 Score =  766 bits (1977), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/902 (36%), Positives = 525/902 (58%), Gaps = 91/902 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E  G+   +++  M+ S++ YA++VI+ RA+PD RDGLKPVHRRIL+GM ++G+ +  
Sbjct: 72  DKEINGLKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTA 131

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+V+GKYHPHG++++Y+A+ RMAQD+SLR  LI+G GNFGSVDGD  AA R
Sbjct: 132 PHKKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMR 191

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  ++D + K+TVDF  NYD + +EPVVL +R+PN+LV+G  GIAVGMATN
Sbjct: 192 YTEARMSKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATN 251

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D   A+  NP+I++  LME I+ PDFPTG +I  + G+  AY+TGRGSI 
Sbjct: 252 IPPHNLGETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIFNKKGLIEAYSTGRGSIT 311

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  +HI++ S  + +I+VTEIPY+V K  ++EKI+EL+++K+I  IAD RDES+R G R
Sbjct: 312 IRSKAHIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIR 371

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+    +++LN L++ T LQS +S NM+AL   +P+   L   L+ ++  + EVV
Sbjct: 372 IVIDIKKSFVPEIVLNNLFKLTKLQSNYSFNMIALVNNEPKLLNLKACLEVYLKHQIEVV 431

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L K R RAH+L GL I + N+D V++II+ S   + A+ +L Q          
Sbjct: 432 SRRLKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQ---------- 481

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+QT+AI++++L RLTGL  + +  ELN +   I   + 
Sbjct: 482 ----------------AFNLSEIQTKAIVDMKLGRLTGLAIEKMNEELNEVHERIANYIK 525

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYV 548
           IL   + L+ +I +EL  +K+     RR+ I       +++ED I + D+V+T+++ GY+
Sbjct: 526 ILGDHNLLINLIIEELQEIKNAYGDARRSDINWDELSSIDNEDLIPKRDIVITLTNNGYI 585

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ +  YR QRRGG G S      +D + D+ + +THT +L F+ L  VY+ +   +P+
Sbjct: 586 KRLDIEEYREQRRGGVGVSTTKTYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPV 645

Query: 609 GSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           G+ Q++G  ++N++  + + E++  I+P  E +    N Y++ ATK G V++     F  
Sbjct: 646 GTKQSKGIPIVNVIPSIQKNEKVIKILPINEYK---QNEYLLTATKKGIVKKTPTILFES 702

Query: 668 INRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           INR+GKIA  + D  D+++       E++I +     +  RF  + IR   GR + GV+G
Sbjct: 703 INRNGKIAFAIRDDDDKLIDALIVKDEDEIFIAASNNKICRFDSNEIRSM-GRMAYGVKG 761

Query: 727 ISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           I +    D V+S++                                              
Sbjct: 762 IKIDDVEDNVVSVS---------------------------------------------- 775

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     + ++I ++ ++G+GK T +  FR + R   G+ + +     + G L+   
Sbjct: 776 -------SSNQGKYIFSLGKEGYGKLTLAAMFRKTRRGASGVYSLN---EEKSGKLIYAA 825

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERIRESEIVD 904
            V+  + +I+++  G  IR  + ++ I  R TKGV + +       +V+  +I + ++ D
Sbjct: 826 TVHGVEDLIVLTSDGVAIRFSLKDVAITGRNTKGVKLVNLKGRTTNIVAATKILDDDLED 885

Query: 905 EA 906
             
Sbjct: 886 ND 887


>gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A
 gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum
           subsp. pallidum SS14]
 gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 813

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/899 (36%), Positives = 492/899 (54%), Gaps = 91/899 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E        E   +  +SI  E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEISTP----EGGVLVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G+ ++    KCA+I G+V+G +HPHG+A++YDAL R+ QD+SLR  +I  QGNFG++
Sbjct: 57  EEKGLRFSGPTRKCAKIVGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GDPPAA RYTE ++ + A  +++D+ K+TV F PN+D S  EP VL  R+P +L NG  
Sbjct: 117 GGDPPAAYRYTEAKMARIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGM TN+P HNL E+     A I+NP++ +  L + I GPDFPTG +I G+ GI+ +
Sbjct: 177 GIAVGMTTNMPPHNLREIAAAISAYIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQS 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG IV+R    IE  S  R+ I+ TE+PYQVN   ++ +I EL R K I  IA++ 
Sbjct: 237 YETGRGKIVVRARFTIETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVN 296

Query: 301 DE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           DE SDR G R+V+ELK+G  A V+LN L+  T LQS F+V  +AL   +P   TL  +++
Sbjct: 297 DETSDRTGLRIVVELKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLTLKDLVR 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R +VV RR  + L KA++R H++  L  A+  +D+++ +IR S N E A++ L +
Sbjct: 357 YFVEHRVDVVTRRAHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLRE 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                               VQ +AI+++++ RLTGL  + +R EL  
Sbjct: 417 Q--------------------------FDFDNVQAQAIVDMQMKRLTGLEVESLRTELKD 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDM 538
           L   I    ++L+S  ++LG++K+E   + D     RRT I    +  ++ ED I +E+M
Sbjct: 451 LTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEM 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           V+ +SHLGY+KRVP+S YR Q RGGKG S   +   DF++ +F  STH  V+F +S G  
Sbjct: 511 VILISHLGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRA 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+ +P      RG  + ++L +   E IT I+   E     N  YV  AT  G V+
Sbjct: 571 YWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLREFS---NKSYVFMATARGVVK 627

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +    +F+     G IA+KL   D ++S      E++++L T+ G+ +R     +R   G
Sbjct: 628 KVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREM-G 686

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RNS GV GI L   D V  +  V                                     
Sbjct: 687 RNSSGVIGIKLTSEDLVAGVLRVS------------------------------------ 710

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +++ +L ++E G+GKR S  +F +  R   G +    ++ +  
Sbjct: 711 -----------------EQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIY--TQTDRK 751

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           GA++    V D D+ + ++ +G  IRV V  I +  R  +GV +      + VV +  +
Sbjct: 752 GAIIGALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCV 810



 Score =  106 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 92/251 (36%), Gaps = 13/251 (5%)

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAI 713
           G V++             +  + + +  E L VE    +E  ++L + LG   R P+SA 
Sbjct: 470 GVVKKETRDIADMFGDDRRTDI-VSNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAY 528

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI---CYMKHMSAQRRLISGDTE 770
           R    R   G    +LA  D +  +      D           Y   +         +  
Sbjct: 529 RN-QNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRG 587

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRA 829
                    + +  I+          + ++   + +G  K+ ++ +F     R   GI A
Sbjct: 588 SHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTR---GIIA 644

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +S       LV+   V D D+++L++ +G  +R+   E+R   R + GV+      ++
Sbjct: 645 LKLS---GGDTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSED 701

Query: 890 RVVSVERIRES 900
            V  V R+ E 
Sbjct: 702 LVAGVLRVSEQ 712



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 55/209 (26%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +      K +   ++      +     +    V   I     ++   KE+ ++ +S  G
Sbjct: 459 EELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLDVEDFIQKEEMVILISHLG 518

Query: 808 FGKRTSSYDFRISNRSGKG-------------------------------------IRAT 830
           + KR     +R  NR GKG                                     +   
Sbjct: 519 YIKRVPVSAYRNQNRGGKGSSSANLAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGI 578

Query: 831 DVSKI-NEIGALVAVFPVNDNDQI---------------ILVSDKGTLIRVPVNEIRIAS 874
             S   N    + ++  V  +++I                + + +G + +V  +     +
Sbjct: 579 PESGRANRGSHIKSLLMVATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTD--NFVN 636

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIV 903
             T+G++    +  + +VS   +++ + V
Sbjct: 637 AKTRGIIALKLSGGDTLVSAVLVQDEDEV 665


>gi|302811412|ref|XP_002987395.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
 gi|300144801|gb|EFJ11482.1| hypothetical protein SELMODRAFT_126010 [Selaginella moellendorffii]
          Length = 880

 Score =  765 bits (1974), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/921 (37%), Positives = 506/921 (54%), Gaps = 88/921 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
                 V +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+   K + 
Sbjct: 19  NDRTLLVELHKEASESYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLASKKPHR 78

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-----------DWSLRLLLIEGQGNFGSVD 121
           KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ            +SLR  LI G GNFGS+D
Sbjct: 79  KCARVVGEVLGKFHPHGDTAVYDALVRLAQASYTLFFSSFISFSLRSPLISGHGNFGSLD 138

Query: 122 GDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           GDP AA RYTECRL   +  + L DL  DTVDF PN+DGS +EPVV+ AR PNVL+NG  
Sbjct: 139 GDPAAAMRYTECRLHPLSEAMLLADLDLDTVDFIPNFDGSQKEPVVMPARLPNVLINGAS 198

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVVD   A+I NP+  ++ LME + GPDFPTG  ILG +GI +A
Sbjct: 199 GIAVGMATNIPPHNLSEVVDALCALIKNPNATVEELMEHLPGPDFPTGGQILGISGIADA 258

Query: 241 YATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + TGRG+I +RG +  E  +    R  I++TEIPY  NK+ ++ KIAELV  K +  ++D
Sbjct: 259 FRTGRGTITVRGKADFEELEGKISRSAIIITEIPYGTNKSTLVAKIAELVNSKTLEGVSD 318

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESDR G R+V+ELKRGA A V+LN LY++T+LQS FS N+V +   +PE F++  +L
Sbjct: 319 IRDESDRAGMRIVVELKRGAVAAVVLNNLYKHTALQSRFSYNLVGILNKEPEVFSIKRLL 378

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + F+ FR  VV RR +  L +A  R H+L G    +  LD+VV++++ + +  +A + L 
Sbjct: 379 EIFLDFRCSVVQRRAQCELTRAEARDHLLEGFLKGLDKLDDVVKVLKSAKDSASAMQALQ 438

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             LS  Q  A+L + L R+T L R+ I  E N
Sbjct: 439 K--------------------------DFELSAAQAEALLGMPLRRITSLERNKILEEHN 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVRED 537
           SL  +     ++LS++ R+L ++++E L++K+E  +PRRT + E     +++ D I   +
Sbjct: 473 SLLAQASNLRELLSNKQRVLRVVEKEALALKNEFGSPRRTVLEEDGDGRIDNIDVIPNNE 532

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             +T+S  GY+KR+    + AQRRG  G+SG  M+  D + D F+   H  VL FS  G 
Sbjct: 533 SFLTLSEKGYIKRMQPDTFLAQRRGTTGKSGAKMKSNDGMVDSFMCRNHDHVLVFSERGV 592

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY  + +++P  S  + G  +I +LS+  GERIT+I P  E      + ++V  T  G +
Sbjct: 593 VYSFRAYQVPECSRTSAGVPIIQVLSIPAGERITSIFPLSEFR---EDHFLVMLTSKGYI 649

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R +L  F  I   G +A++L   DE+  V   TQ + I + ++ G  ++ P    R   
Sbjct: 650 KRTELPAFSSIRPQGIVAIQLMEGDELKWVRLATQSDRIFIGSRNGMAMQAPC-EFRSMR 708

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + G+R + + +GD++ ++ IV  +       +     +  + +              
Sbjct: 709 -RGARGLRAMRIKEGDEIAAIDIVPGSVWKESPTLLCTHVLCKRSKASEA---------- 757

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                ++L VSE G  KR     F     +  G+        + 
Sbjct: 758 --------------------PWLLFVSENGMAKRVPITSFPRHGLNKVGVIGCKFVPGDR 797

Query: 838 IGALVAVFPV-------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
              L ++F V         N++I++ +  G   R  V EI I SR  +G+ +     D++
Sbjct: 798 ---LASMFVVGTSVSDGESNEEIVVGTQGGIFNRFKVREISIKSRMGRGIKLMKLDVDDK 854

Query: 891 VVSVERIRESEIV--DEAEST 909
           V SV  +  S+    DE  S 
Sbjct: 855 VKSVSVVAASDSPAHDEPPSD 875


>gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
 gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB]
          Length = 833

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 364/839 (43%), Positives = 516/839 (61%), Gaps = 40/839 (4%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I DEM+ SY+ YA++VI+GRAIPD+RDGLKPVHRR+LF M +MG  WNK Y K ARI 
Sbjct: 12  VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+++GKYHPHG+AA YD + R+AQD+S+R  LI+GQGNFGS+D DPPAA RYTE R+ + 
Sbjct: 72  GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
              +L DL KDTVDF PNYD S  EP +L +R P +L+NG  GIAVG+ATNIP HN+ EV
Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           + G +A+I NP++ L+ +M+ I GPDFPT   I GR GI +AY TGRG I +R    IEK
Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFINGREGIISAYRTGRGIIRLRAKVVIEK 251

Query: 259 T-SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               DRE IVVTEIPYQVNKAA++EKI+ELV+EK+I  I+DLRDESDR+G R+VI+LKR 
Sbjct: 252 NERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLKRD 311

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            +++VILNQLY++T ++S F + M+A+   +P  F LI ILK+F+ FR+ V+VRRT + +
Sbjct: 312 ENSNVILNQLYKHTQMESTFGIIMLAIENGQPHVFNLIEILKSFIEFRKVVIVRRTTFEV 371

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           NKAR+RAH+L GL IA+ N+DEVV +I+ S +P+ A   L  R                 
Sbjct: 372 NKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSR----------------- 414

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                      L+++Q RAIL++RL RLTGL +  I+ E ++L  EI+    IL    ++
Sbjct: 415 ---------FSLTDIQARAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKV 465

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L +I  E+  + D     RRT IV    D++ ED I  E+MVVT S  GY+KR P S+YR
Sbjct: 466 LEVIISEMEEIIDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYR 525

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGG+G+ G++ ++ED V  LFI STH  VL F++ G +Y  KV+++P     A+GK 
Sbjct: 526 TQRRGGRGKVGMMTKEEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKP 585

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N++++   ER+  ++P    E       V+ AT+ G V++  L+ +      G IA+ 
Sbjct: 586 IVNLINIGPDERVAAVLPVRSFE---EGQAVIMATRAGIVKKTDLTAYSNPRSGGIIALS 642

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           +D  DE++ V+    + D+ L T+ G+ +RF    IR   GR + GVRGIS+   D VI 
Sbjct: 643 IDEGDELVDVKLTGGDQDVFLATRKGKAIRFKEDDIRTM-GRTARGVRGISMDSDDAVIG 701

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M I    +A            +A              +      +G +  +  Q     E
Sbjct: 702 MDIPREGNAIVTVSEKGCGKRTAVSEYRLQKRGGKGMINLRIVPKGGLVADILQVTG--E 759

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP----VNDNDQ 852
           + +L +S  G   R    D  + +R  +G++     +++    LV +      V + + 
Sbjct: 760 EDLLLMSNSGKIIRMKVEDVPLIHRVTQGVKLI---ELDAEEQLVGMTSAEREVREEED 815



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 101/256 (39%), Gaps = 20/256 (7%)

Query: 657 VRRNKLSDFIQINRSGKI----AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           VRR       +      I     + LD+ DE+++V   ++            C RF ++ 
Sbjct: 364 VRRTTFE-VNKARERAHILEGLIIALDNIDEVVAVIKASKSPQ---EAASALCSRFSLTD 419

Query: 713 IRVFAGRNSVGVRGISLA--KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           I+    R  + +R   L   +  ++      +L         +   + +         + 
Sbjct: 420 IQA---RAILDMRLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVIISEMEEI 476

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
            +    +  + +  +  +   +++  +E+ ++T S+ G+ KR  S  +R   R G+G   
Sbjct: 477 IDRYGDERRTEIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVG 536

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTA 886
               + + +  L   F  + +D +++ ++ G L  + V +I  A R  KG   V + +  
Sbjct: 537 MMTKEEDVVERL---FIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIG 593

Query: 887 KDERVVSVERIRESEI 902
            DERV +V  +R  E 
Sbjct: 594 PDERVAAVLPVRSFEE 609


>gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 853

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 519/900 (57%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 40  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 447

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 448 --------------AHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 554 KMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P       ++N +++  +  GN+++  LS F  I 
Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 670

Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 671 KNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 730 KLEEGHKIIGAC------------------------------------------------ 741

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 742 -----FAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N + I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 794 KNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  764 bits (1973), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/910 (38%), Positives = 519/910 (57%), Gaps = 79/910 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 97  DESRIVPFELHKEATESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336

Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H + G+ + + N+DEV+++I+                       
Sbjct: 457 VERRARFKLSHAQQRKHNIEGIVVGLDNVDEVIKLIKN---------------------- 494

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   SS +        LSE Q  AILE+ L RLT L R  + +E +SL  +I +  
Sbjct: 495 ----ASSHSSASAALQSEYGLSEKQAEAILEITLRRLTTLERKKVTDESSSLTEQITKLE 550

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ +S  GY
Sbjct: 551 QLLSTRANILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAISEKGY 610

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK++    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 611 VKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFA---EDRYLLMLTVNGCIKKVSLKLFSG 727

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G  V      +R  + RN+ GV  +
Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGVRTLS-RNTKGVTAM 786

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+  +     E                                   SE
Sbjct: 787 RLKNEDKIASMDIIPASLRKDME---------------------------------EKSE 813

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+     ++      L AVF V
Sbjct: 814 DASIVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAE---DDRLAAVFVV 870

Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                     ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   I  
Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930

Query: 900 SEIVDEAEST 909
           ++  +E E T
Sbjct: 931 AD-EEETEGT 939



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 96/280 (34%), Gaps = 61/280 (21%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V++ K   F        GK   KL   D +     C   
Sbjct: 590 LEDIDVIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAH 649

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     RN+ G   V+ +S+++G++V S+  V         
Sbjct: 650 DHVLFFSDRGIVYSTRAYKI-PECSRNAAGTPLVQILSMSEGERVTSIVPVSE------- 701

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        +++++L ++  G  K
Sbjct: 702 -------------------------------------------FAEDRYLLMLTVNGCIK 718

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           + S   F  S     GI A  +   N    L  V   + +D + + S  G ++    + +
Sbjct: 719 KVSLKLF--SGIRSTGIIAIQL---NSGDELKWVRCCSSDDLVAMASQNGLVVLSTCDGV 773

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R  SR TKGV       ++++ S++ I  S   D  E +E
Sbjct: 774 RTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSE 813



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 78/250 (31%), Gaps = 26/250 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G +K+V L ++   R  G     +   DE          +   ++  
Sbjct: 702 FAEDRYLLMLTVNGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKW---VRCCSSDDLVAM 758

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN------- 645
           +S   +             +         L          I+P    +            
Sbjct: 759 ASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDASIV 818

Query: 646 -----LYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC-------- 690
                 +++F  ++G  +R  LS F +   +       K    D + +V           
Sbjct: 819 KQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDG 878

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             +  ++L ++ G   R  +  I     R + GV  + L    ++ S +++  AD +  E
Sbjct: 879 ESDEQVVLVSQSGTVNRIKVRDI-SIQSRRARGVILMRLDHAGKIQSASLISAADEEETE 937

Query: 751 RICYMKHMSA 760
                + + A
Sbjct: 938 GTPTNETLEA 947


>gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
 gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243]
          Length = 932

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/895 (38%), Positives = 522/895 (58%), Gaps = 62/895 (6%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K AR  G+
Sbjct: 91  LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL K A 
Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D
Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    +E+  
Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGK 330

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK+ A  
Sbjct: 331 NGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIP 390

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y L KA
Sbjct: 391 QVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +RAH+L GL IA+ N+DEV+ IIR S   + A   + +R                    
Sbjct: 451 EERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTER-------------------- 490

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L++ QT AILE+RL RLTGL    I +EL  L  +I     +LS    +  I
Sbjct: 491 ------FGLTDKQTAAILEMRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDI 544

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+EL  VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ YR Q+
Sbjct: 545 IKEELSEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQK 604

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG A++N
Sbjct: 605 RGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVN 664

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE I+ ++   +     ++ Y++FAT+HG V++  +  + +  R G IA+ L  
Sbjct: 665 LLPLEKGETISAVIATKDFP---SDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKD 721

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D ++SV+       +L+ +  G+ + +    +R   GR+++GVRG+++    +V+ M I
Sbjct: 722 NDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPIAKVLGMEI 780

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                  +          +                    + +  +      ++  ++  I
Sbjct: 781 AQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA--VMKIVAEDDEI 838

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + +SE+G   RT         RS +G+     +  + + A+              +S +G
Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-------------ISSRG 885

Query: 861 TLIRVPVNEIRIASRATKG--VVIFSTAKD--ERVVSVER-IRESEIVDEAESTE 910
                         +   G  V      ++  + +        E E V+EAE+ E
Sbjct: 886 K------------KKKASGAQVEGEELDENAIDELEDGAEGTAEIESVEEAENAE 928


>gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
 gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489]
          Length = 818

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/898 (37%), Positives = 499/898 (55%), Gaps = 85/898 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + E    +  + I DE++ +++ Y+++VI+ RA+PD RDGLKPVHRRI++ M +  +  
Sbjct: 2   ENTENTTNLIKIPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSMEENHLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
             K  KCA I G+V+GKYHPHG+A++YDAL R+ QD+S R +++   GNFG++ GDPPAA
Sbjct: 62  GGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIAGDPPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +++D+ KDTVD  PNYD + +EP VL +++P +L NG  GIAVGMA
Sbjct: 122 YRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+P HNL EV     A IDN +I +D L+  I+GPDFPTG +I G+ GI +AY TGRG 
Sbjct: 182 TNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIFGKHGIADAYRTGRGK 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQ 306
           I++RG  +IE +    E IV TE+PY VN   + EKI EL R+K I  I+ + DE SDR 
Sbjct: 242 ILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAINDESSDRS 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VI LKRGA   V++NQL+  T+LQS F V  +AL   +P+   L  I+K FV  R+
Sbjct: 302 GMRIVIHLKRGAITKVVINQLFAKTALQSSFGVINLALVKGRPQILNLKQIIKCFVDHRD 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RR  + LNKAR R H+L  L  AV  +DEV+++IR S +   A+  LMQR      
Sbjct: 362 EVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARLMQR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                   E+Q  AI+E+RL RLT L  D++R E+  +   I  
Sbjct: 416 --------------------FGFDEIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAH 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHL 545
           C D+L+   ++L IIK E   + ++    R+T IV   +  +  ED I  EDMV+ +S L
Sbjct: 456 CEDLLAHHEKILAIIKDETNELSEKYGDDRKTDIVAGEVESINVEDLIKEEDMVILISKL 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRV +S Y++Q RGGKG     + +ED++  +F+ STH  ++F ++ G  Y  KV  
Sbjct: 516 GYIKRVSVSQYKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHE 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S  +RG  + ++L++N  E ITTI+   E      N Y+  AT +G V++   SDF
Sbjct: 576 IPEASKTSRGSHIKSLLAVNANEDITTIVSLKEFS---ENNYLFMATANGVVKKTPTSDF 632

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 G  A++LD  D ++S    T ++++LL ++ GQ +R     +R   GR+S GV 
Sbjct: 633 KNAKSRGMQAVRLDEGDTLVSAILSTGKDELLLVSRRGQALRINEEDVRPM-GRSSRGVA 691

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L++GD++ S   +                                            
Sbjct: 692 GLKLSEGDELCSAIRIH------------------------------------------- 708

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +  IL V+EKG GKR  S +F    R   G +      + + G ++   
Sbjct: 709 --------TEPDSKILVVTEKGIGKRVDSAEFNAHGRGTGGQKI--FGNVEDKGEIIGAL 758

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V D D I+ ++ +GT +RV   +I +  R   G+ + S    + VV V+RI   E  
Sbjct: 759 CVRDTDSIMCITSQGTSVRVEAKDITVQGRGASGIKVVSITDPDYVVGVDRIANDEDE 816


>gi|220910790|ref|YP_002486099.1| DNA gyrase subunit A [Arthrobacter chlorophenolicus A6]
 gi|219857668|gb|ACL38010.1| DNA gyrase, A subunit [Arthrobacter chlorophenolicus A6]
          Length = 876

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/929 (36%), Positives = 489/929 (52%), Gaps = 103/929 (11%)

Query: 1   MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47
           M++    +   +                +  V +  EMQ SYL YA+ VI+GRA+PD+RD
Sbjct: 1   MSDETRENPATDAGNPETVLEGDVLIDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRD 60

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M   G   ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R
Sbjct: 61  GLKPVHRRVLYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMR 120

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L  GQGNFGS   D  AA RYTE ++   A  ++ D+ ++TVDF+ NYDG  QEP +L
Sbjct: 121 YPLALGQGNFGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTIL 180

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI----IRGP 223
            AR+PN+LVNG  GIAVGMATNIP HNL EV DG    + NP    + L+E     ++GP
Sbjct: 181 PARFPNLLVNGSSGIAVGMATNIPPHNLREVADGVQWYLANPAATREELLEELLRRVKGP 240

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DFPTGA ILG  GI++AY TGRGS+ +R V ++E+   +R  +VVTE+PYQ N   +  K
Sbjct: 241 DFPTGATILGHKGIEDAYRTGRGSVTMRAVVNVEELQ-NRTCLVVTELPYQANPDNLAIK 299

Query: 284 IAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           IAELV++ +I  IADLRDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+
Sbjct: 300 IAELVKDGKIQGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANML 359

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           A+    P   +L   ++ +V  + +V+ RRT+Y L KA + AH+L  L  A+  LDEV+ 
Sbjct: 360 AIVDGVPRTLSLDAFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIA 419

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S   E AR  LM+                           + + E+Q RAIL+++L
Sbjct: 420 LIRASNTTEAARDGLME--------------------------LLDIDELQARAILDMQL 453

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RL  L R  I++  + L   I E   IL+S  R   II  EL  + D+    RRT+I+ 
Sbjct: 454 RRLAALERQKIQDRHSELEALIAEYNAILASEERQREIISTELGEIVDKHGDDRRTKILM 513

Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
               DM  ED I  E+MVVT++  GYVKR     YR+Q+RGGKG  G  +R +D V   F
Sbjct: 514 GFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFF 573

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +TH  +LFF++LG VY+ K + L      A+G+ + N+L+    E I  ++   + + 
Sbjct: 574 VTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLLAFQPDEHIAQVLDLKDYQ- 632

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
              + Y+V ATK G V++                 +L+  D                   
Sbjct: 633 --QSPYLVLATKRGLVKKT----------------RLEDYDTNR---------------- 658

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                              S GV  I+L  GD+++S  +V   D  +             
Sbjct: 659 -------------------SAGVIAINLRDGDELVSAQLVSETDDLFLVSRMGQSIRFTA 699

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                      TS            E    ++     F+  V+E G+ KRT+  ++R+  
Sbjct: 700 TDDALRPMGRATSGVT-GMKFREDDELLAADVVTDGSFVFIVTEGGYAKRTAVEEYRLQG 758

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+     +  E G LV    V + D++++V + G ++R  V  +    R T GV+
Sbjct: 759 RGGLGIKVGKYQE--ERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVI 816

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                K++R++ V R  E  + DE  + +
Sbjct: 817 FAKPDKNDRIIEVARNSERGLEDEESAED 845



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 100/259 (38%), Gaps = 17/259 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G VK+  L  Y   R  G     + +RD D +    +VS    +   
Sbjct: 631 YQQSPYLVLATKRGLVKKTRLEDYDTNRSAG--VIAINLRDGDELVSAQLVSETDDLFLV 688

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S +G   +       +  P  R  + +  +   + + +             +  +V   T
Sbjct: 689 SRMGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVT------DGSFVFIVT 741

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708
           + G  +R  + ++ ++   G + +K+    E    ++      +E+++L+  + G+ VR 
Sbjct: 742 EGGYAKRTAVEEY-RLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRS 800

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ +    GR+++GV      K D++I   +  +++   ++       ++      +  
Sbjct: 801 SVAGV-PAKGRDTMGVIFAKPDKNDRII--EVARNSERGLEDEESAEDDVTLAEESPAFV 857

Query: 769 TEEITSLKNDSSVEGNISE 787
           +E+ +     +     ++E
Sbjct: 858 SEDASGDAEPNDDNTEVTE 876


>gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 868

 Score =  764 bits (1972), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 519/900 (57%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 55  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 114

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 115 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 174

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 175 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 234

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 235 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 294

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 295 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 354

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 355 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 414

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 462

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 463 --------------AHTYNLNPGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 508

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 509 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 568

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 569 KMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 628

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P       ++N +++  +  GN+++  LS F  I 
Sbjct: 629 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 685

Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 686 KNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 744

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 745 KLEEGHKIIGAC------------------------------------------------ 756

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 757 -----FAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 808

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N + I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 809 KNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868


>gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana]
 gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 950

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 356/910 (39%), Positives = 517/910 (56%), Gaps = 79/910 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 97  DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336

Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I                        
Sbjct: 457 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELIT----------------------- 493

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   SS T        LSE Q  AILE+ L RLT L R    +E +SL  +I +  
Sbjct: 494 ---KASSHSSATAALQSEYGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 550

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ VS  GY
Sbjct: 551 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 610

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 611 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFA---EDRYLLMLTVNGCIKKVSLKLFSG 727

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  + RN+ GV  +
Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 786

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+  +     E                                   SE
Sbjct: 787 RLKNEDKIASMDIIPASLRKDME---------------------------------EKSE 813

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+     ++      L AVF V
Sbjct: 814 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAE---DDRLAAVFVV 870

Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                     ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   I  
Sbjct: 871 GYSLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRRARGVILMRLDHAGKIQSASLISA 930

Query: 900 SEIVDEAEST 909
           ++  +E E T
Sbjct: 931 AD-EEETEGT 939



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 61/280 (21%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V+R K   F        GK   KL   D +     C   
Sbjct: 590 LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAH 649

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     RN+ G   V+ +S+++G++V S+  V         
Sbjct: 650 DHVLFFSDRGIVYSTRAYKI-PECSRNAAGTPLVQILSMSEGERVTSIVPVSE------- 701

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        +++++L ++  G  K
Sbjct: 702 -------------------------------------------FAEDRYLLMLTVNGCIK 718

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           + S   F  S     GI A  +   N    L  V   + +D + + S  G +     + +
Sbjct: 719 KVSLKLF--SGIRSTGIIAIQL---NSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGV 773

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R  SR TKGV       ++++ S++ I  S   D  E +E
Sbjct: 774 RTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSE 813



 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 86/249 (34%), Gaps = 24/249 (9%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  G +K+V L ++   R  G     + +   D +  +   S+   V   
Sbjct: 702 FAEDRYLLMLTVNGCIKKVSLKLFSGIRSTG--IIAIQLNSGDELKWVRCCSSDDLVAMA 759

Query: 593 SSLGFVYKEKVWRLPIGSPQARG-----------KALINILSLNQGERITTIMPFPEDES 641
           S  G V       +   S   +G            A ++I+  +  + +           
Sbjct: 760 SQNGMVALSTCDGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSEDASLVK 819

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGK--IAMKLDSRDEILSVETC--------T 691
                +++F  ++G  +R  LS F +   +       K    D + +V            
Sbjct: 820 QSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKFAEDDRLAAVFVVGYSLAEDGE 879

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            +  ++L ++ G   R  +  I     R + GV  + L    ++ S +++  AD +  E 
Sbjct: 880 SDEQVVLVSQSGTVNRIKVRDI-SIQSRRARGVILMRLDHAGKIQSASLISAADEEETEG 938

Query: 752 ICYMKHMSA 760
               + + A
Sbjct: 939 TLSNEAVEA 947


>gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
 gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455]
          Length = 871

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/897 (36%), Positives = 495/897 (55%), Gaps = 90/897 (10%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +E+E   +    +  E++ SYL YA++VI+GRA+PD RDGLKPV RR+L+GM+ +G+  N
Sbjct: 2   EEQEMGRVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHN 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K AR+ GEVMGKYHPHG+A+IYD + R+AQ W+LR  L++GQGNFGSVDGD  AA 
Sbjct: 62  QAYKKSARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R  +    +L D+ +DTVD+ PN+D S +EP+ L +  PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARFAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNLGEV+D    +ID+P+ +L  LM  + GPDFPTG +I+GR GI +AY TGRG I
Sbjct: 182 NMPPHNLGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGGIIMGREGIVDAYRTGRGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           ++RG   +E+    R  +V+TEIPY VNK  ++E IA+ V+E  I  ++DLRDESDRQG 
Sbjct: 242 IVRGRCVVEEGKR-RTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGL 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V++L R    +++  QLY  T +QS F V  + L   +P    L  +L+ F+ +R +V
Sbjct: 301 RIVLDLNRDGDPELVQRQLYNRTLMQSTFGVINLTLVDQRPVELGLKSMLEVFLDYRRDV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RRT + L KA++R H++ GL  A+  +DEV+RIIR +   E A   L ++        
Sbjct: 361 VRRRTAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQ-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  SE Q +AIL++RL RLTGL RD +  E+  L  +I    
Sbjct: 413 ------------------LQFSEKQAQAILDMRLQRLTGLERDKLTAEMAQLLADIARYQ 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLG 546
           +IL+    L G+I+ EL  ++ +    RRT I   +       ED +  E++V+T+S  G
Sbjct: 455 EILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTSDSYEDLMPEENIVITLSKDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y++R  L  Y  Q RGGKGR G  + +ED V  + + +TH  VL F+S G V+  K   +
Sbjct: 515 YLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMV 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P      +G+ +   +SL++GE +  I+    D  S     VV  T+ G  +R   S+  
Sbjct: 575 PET-KSGKGRKVEQFISLSEGETVVEILGRFPDNCST----VVLITRRGIAKRMDKSELQ 629

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            + R+G+  M LD  D+I  +      +D+ L + +G+ +R     IR   GR++ GV+ 
Sbjct: 630 NLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEIRTM-GRSARGVKA 688

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L K D++IS  ++                                             
Sbjct: 689 MKLGKDDEIISCEVI--------------------------------------------- 703

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  IL VS++G GK TS  +F + +R+  G RA  +      G L     
Sbjct: 704 --------AGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDR--TGRLAVANT 753

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V  +D++ L++  G +IR+ V+ I    R   G ++      + V +V  I + ++V
Sbjct: 754 VFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDLV 810


>gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
 gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme
           DSM 15981]
          Length = 850

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/847 (40%), Positives = 501/847 (59%), Gaps = 39/847 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+LF M+++    +
Sbjct: 2   EPNVFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTV+F PN+D + +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EVV   V +IDN      +  ++ LMEI++GPDFPTGA ILGR  I+ AY T
Sbjct: 182 NIPPHNLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATILGRRAIEQAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR  I +R V++IE  +  + +I+V+E+PY VNKA ++EKIA+LV+EK+I  I  + DES
Sbjct: 242 GRSKIKVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L  ++ 
Sbjct: 302 NREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALVDSQPKVLNLHQMLDYYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +E+VV RRT+Y LNKA +RAH+L GL IA+ ++DEV+ IIR S N   A+R L +R   
Sbjct: 362 HQEDVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q +AI+++RL  LTGL R+ I NE   L   
Sbjct: 419 -----------------------FGLSDAQAQAIVDMRLRALTGLEREKIENEYKELQAR 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   +LL +IK E+  + D+    RRT I     DM  ED I  ED V+ ++
Sbjct: 456 ISELKAILADEKKLLTVIKDEITVIADKYGDDRRTAIG-YDDDMSMEDLIPDEDTVIAMT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           HLGY+KR+ +  +R+Q RGGKG  G+   +ED++ DL + + H  V+ F++ G VY+ K 
Sbjct: 515 HLGYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A++N+L L   E+IT I+P  E      + Y+  ATK G V++  + 
Sbjct: 575 YEIPEAGRTARGTAIVNLLQLQPEEKITAIIPMREYN---EDKYLFMATKGGMVKKTPMC 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+    + DI L TK G C+RF  + +RV  GR S+G
Sbjct: 632 EYENVRKNGLQAIVLRENDELIEVKATDNQEDIFLITKNGMCIRFHETDVRV-TGRVSMG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+    GD+VI M +    D+        M   +      + +      +     +  
Sbjct: 691 VIGMRFEDGDEVIGMQMASQGDSLLVVSENGMGKRTVINEFSAQNRGGKGVI--CYKITE 748

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L    + I+ ++ +G   R    D  +  R+  G++   +   ++I  + +
Sbjct: 749 KTGCLIGAKLVDDGREIMMITTEGIVIRMVVDDISVIGRNTSGVKLMAIDHDSDI-KVAS 807

Query: 844 VFPVNDN 850
           +  V ++
Sbjct: 808 IAKVRES 814


>gi|325961457|ref|YP_004239363.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
 gi|323467544|gb|ADX71229.1| DNA gyrase subunit A [Arthrobacter phenanthrenivorans Sphe3]
          Length = 892

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/929 (36%), Positives = 485/929 (52%), Gaps = 103/929 (11%)

Query: 1   MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47
           M++    +   E                +  V +  EMQ SYL YA+ VI+GRA+PD+RD
Sbjct: 1   MSDETPENPVPEAGNPDTVLEGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRD 60

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M   G   ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R
Sbjct: 61  GLKPVHRRVLYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMR 120

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L  GQGNFGS   D  AA RYTE ++   A  ++ D+ ++TVDF+ NYDG  QEP +L
Sbjct: 121 YPLALGQGNFGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTIL 180

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGP 223
            AR+PN+LVNG  GIAVGMATNIP HNL EV DG    + NP       L+ L+  ++GP
Sbjct: 181 PARFPNLLVNGSSGIAVGMATNIPPHNLREVADGVQWYLANPGASREELLEELLLRVKGP 240

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DFPTGA ILG  GI++AY TGRGS+ +R V ++E+    R  +VVTE+PYQ N   +  K
Sbjct: 241 DFPTGATILGHKGIEDAYRTGRGSVTMRAVVNVEELQ-GRTCLVVTELPYQANPDNLAIK 299

Query: 284 IAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           IAELV++ +I  IADLRDE S R G R+VI LKR A A V+LN LY++T LQS FS NM+
Sbjct: 300 IAELVKDGKIQGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTELQSNFSANML 359

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           A+    P   +L   ++ +V  + +V+ RRT+Y L KA + AH+L  L  A+  LDEV+ 
Sbjct: 360 AIVDGVPRTLSLDAFIRHWVTHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIA 419

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S   E AR  LM+                           + + E+Q RAIL+++L
Sbjct: 420 LIRASNTTEAARDGLME--------------------------LLDIDELQARAILDMQL 453

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RL  L R  I++    L   I E  +IL S  R   II  EL  + D+    RRTRI+ 
Sbjct: 454 RRLAALERQKIQDRHAELEALIAEYNEILGSEQRQREIISTELGEIVDKHGDDRRTRILM 513

Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
               DM  ED I  E+MVVT++  GYVKR     YR+Q+RGGKG  G  +R +D V   F
Sbjct: 514 GFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFF 573

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +TH  +LFF++LG VY+ K + L      A+G+ + N+++    E I  ++   + + 
Sbjct: 574 VTTTHHWLLFFTNLGRVYRAKAYELMEAGRDAKGQHVANLMAFQPDEHIAQVLDLKDYQ- 632

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                Y+V ATK G V++                 +L+  D                   
Sbjct: 633 --QAPYLVLATKRGLVKKT----------------RLEDYDTNR---------------- 658

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                              S GV  I+L  GD+++S  +V   D                
Sbjct: 659 -------------------SAGVIAINLRDGDELVSAQLVSETDDLLLVSRKGQSIRFTA 699

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                      TS            E     +     F+  V+E G+ KRT+  ++R+  
Sbjct: 700 TEDALRPMGRATSGVT-GMKFREDDELLAANVVTDGSFVFIVTEGGYAKRTAVEEYRLQG 758

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+   +++  E G LV    V + D++++V + G ++R  V  +    R T GV+
Sbjct: 759 RGGLGIKVAKLAE--ERGDLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVI 816

Query: 882 IFSTAKDERVVSVERIRESEIVDEAESTE 910
                K++R++ V R  E  I  E  + +
Sbjct: 817 FAKPDKNDRIIEVARNSERGIEGEESAED 845



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 103/273 (37%), Gaps = 20/273 (7%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G VK+  L  Y   R  G     + +RD D +    +VS    +L  
Sbjct: 631 YQQAPYLVLATKRGLVKKTRLEDYDTNRSAG--VIAINLRDGDELVSAQLVSETDDLLLV 688

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +       +  P  R  + +  +   + + +             +  +V   T
Sbjct: 689 SRKGQSIRFTATEDAL-RPMGRATSGVTGMKFREDDELLAANVVT------DGSFVFIVT 741

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708
           + G  +R  + ++ ++   G + +K+    E    ++      +E+++L+  + G+ VR 
Sbjct: 742 EGGYAKRTAVEEY-RLQGRGGLGIKVAKLAEERGDLVGALIVQEEDEVLVVMEGGKVVRS 800

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVI-----SMAIVLHADADYDERICYMKHMSAQRR 763
            ++ +    GR+++GV      K D++I     S   +   ++  D+        SA   
Sbjct: 801 SVAGV-PAKGRDTMGVIFAKPDKNDRIIEVARNSERGIEGEESAEDDVTLAEDGGSAAEA 859

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                 +E  +++++ +       E   E+  +
Sbjct: 860 AAPAVADESPAVESEDASGDAEPNEDYTEVTSE 892


>gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
 gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1]
          Length = 932

 Score =  763 bits (1971), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/895 (38%), Positives = 522/895 (58%), Gaps = 62/895 (6%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K AR  G+
Sbjct: 91  LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL K A 
Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D
Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    +E+  
Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGK 330

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK+ A  
Sbjct: 331 NGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIP 390

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y L KA
Sbjct: 391 QVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +RAH+L GL IA+ N+DE++ IIR S   + A   + +R                    
Sbjct: 451 EERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER-------------------- 490

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L++ QT AILE+RL RLTGL    I +EL  L   I     +LS    +  I
Sbjct: 491 ------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEI 544

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+ELL VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ YR Q+
Sbjct: 545 IKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQK 604

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG A++N
Sbjct: 605 RGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVN 664

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE I+ ++   +     ++ Y++FAT+HG V++  +  + +  R G IA+ L  
Sbjct: 665 LLPLEKGETISAVIATKDFP---SDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKD 721

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D ++SV+       +L+ +  G+ + +    +R   GR+++GVRG+++    +V+ M I
Sbjct: 722 NDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPIAKVLGMEI 780

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                  +          +                    + +  +      ++  ++  I
Sbjct: 781 AQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA--VMKIVAEDDEI 838

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + +SE+G   RT         RS +G+     +  + + A+              +S +G
Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-------------ISSRG 885

Query: 861 TLIRVPVNEIRIASRATKG--VVIFSTAKD--ERVVSVER-IRESEIVDEAESTE 910
                         +   G  V      ++  + +        E E V+EAE+ E
Sbjct: 886 K------------KKKASGAQVEGEELDENAIDELEDGAEGTAEIESVEEAENAE 928


>gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232]
 gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 853

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 520/900 (57%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 40  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 447

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 448 --------------AHTYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 554 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P       ++N +++  +  GN+++  LS F  I 
Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 670

Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 671 KNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 730 KLEEGHKIIGAC------------------------------------------------ 741

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 742 -----FAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N++ I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 794 KNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni]
          Length = 844

 Score =  763 bits (1970), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/913 (38%), Positives = 535/913 (58%), Gaps = 122/913 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  E  VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R   HIEK   +++ IV+ E+PYQ NKA ++ +IAELV+EK+I  I+++RDES++
Sbjct: 241 GRVKVRAKPHIEK-KTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNK 299

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R
Sbjct: 300 EGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHR 359

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +     
Sbjct: 360 KTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK----- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI 
Sbjct: 415 ---------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIA 453

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H 
Sbjct: 454 RLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHR 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++
Sbjct: 514 GYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYK 573

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+   LS++
Sbjct: 574 IPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKCTNLSEY 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEND------------------------------ 695
             I   G  A+ LD  DE+++     ++ D                              
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADY 748
                 +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ + +   
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE--- 746

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                            Q IL++S KG 
Sbjct: 747 -------------------------------------------------QEILSISAKGI 757

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +IRV + 
Sbjct: 758 GKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKMIRVDMQ 815

Query: 869 EIRIASRATKGVV 881
            IR A R T GV+
Sbjct: 816 SIRKAGRNTSGVI 828



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 102/290 (35%), Gaps = 76/290 (26%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 386 IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 436

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 437 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 496

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------- 826
            ++L   E  ++T++ +G+ KR  S  +    R GKG                       
Sbjct: 497 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT 556

Query: 827 ------------IRATDVSKINEIGA---LVAVFPVNDNDQIILV--------------- 856
                       ++   + + +       +V +  +   ++I+ +               
Sbjct: 557 LMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFF 616

Query: 857 SDKGTLIRVPVNE---IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  G +    ++E   IR       GV   +  +++ +V+   ++  E  
Sbjct: 617 TKNGIVKCTNLSEYQNIRSV-----GVRAINLDENDELVTAIIVQRDEDE 661


>gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J]
          Length = 868

 Score =  763 bits (1969), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/900 (36%), Positives = 520/900 (57%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 55  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 114

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 115 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 174

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 175 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 234

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 235 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 294

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 295 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 354

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 355 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 414

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 462

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 463 --------------AHTYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 508

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 509 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 568

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 569 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 628

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P       ++N +++  +  GN+++  LS F  I 
Sbjct: 629 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 685

Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKIA+KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 686 KNGKIALKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 744

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 745 KLEEGHKIIGAC------------------------------------------------ 756

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 757 -----FAFDNHFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 808

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N++ I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 809 KNNEEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 868


>gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 869

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/862 (39%), Positives = 493/862 (57%), Gaps = 55/862 (6%)

Query: 1   MTEHIISSDEEEEK-----GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +    +  E++       +  V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MADENTPNTPEDQTQGATLRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC++   +  ++ D+ +DTVDF+ NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231
           +NG  GIAVGMATNIP HNL EV +G    + NP+   + L+    + I+GPDFPTGA++
Sbjct: 181 INGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV+E 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIADLVKEA 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 RIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E AR  LM                            + + E+Q  AILE++L RL  L R
Sbjct: 420 EIARGGLM--------------------------DLLTIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E   IL+S  R   II +EL ++ ++    RRT+++    DM  E
Sbjct: 454 QKIIQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYGDDRRTKLIPFDGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT+S  GYVKR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP    +ARG+ + N+L+    E+I  I+   + E      Y+V 
Sbjct: 574 FFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYE---AAPYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705
           ATK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q 
Sbjct: 631 ATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKAQS 690

Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-ADYDERICYMKHMSAQR 762
           +RF  +   +R   GR + GV+G+S  +GD+++SM +V             Y K  +   
Sbjct: 691 IRFTATDESLRPM-GRATSGVKGMSFREGDELLSMNVVRPGTFVFTATDGGYAKRTNVDE 749

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
             + G               G++      E   +   IL ++  G   RT   + R + R
Sbjct: 750 YRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDE---ILAITLSGGVIRTRVNEVRETGR 806

Query: 823 SGKGIRATDVSKINEIGALVAV 844
              G++  ++ K     A+V +
Sbjct: 807 DTMGVQLINLGKR---DAVVGI 825



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 58/221 (26%)

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            M+I      +             + +     +++        +            +   
Sbjct: 509 DMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTT 568

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKG-----------------IRAT--------- 830
             ++L  + KG   R  +Y+   + R  +G                 I A          
Sbjct: 569 HHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIAQILAIRDYEAAPYL 628

Query: 831 ----------DVSKIN----EIGALVA----------------VFPVNDNDQIILVSDKG 860
                          +      G ++A                   V+ +D ++L+S K 
Sbjct: 629 VLATKSGLVKKTPLKDYDSPRSGGVIAINLRETEDGREDELIGAELVSADDDLLLISKKA 688

Query: 861 TLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
             IR    +  +R   RAT GV   S  + + ++S+  +R 
Sbjct: 689 QSIRFTATDESLRPMGRATSGVKGMSFREGDELLSMNVVRP 729


>gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
 gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO]
          Length = 808

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 321/888 (36%), Positives = 491/888 (55%), Gaps = 91/888 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I S +I DE+   Y+ Y+++VI+GRAIPD+RDGLKPV RRIL+ M ++G+  N +  KC
Sbjct: 3   EILSKNIEDELVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG+A++YDAL R+AQ +S+R  L+ GQGNFGS+D DPPAA RYTE +
Sbjct: 63  ARIVGEVLGKYHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAK 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L DL K+TV    N+D S  EP VL ++ PN+L+NG  GIAVGMAT+IP HN
Sbjct: 123 LSELAEEMLQDLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EVV+    +I+NP+  +  L+ II+GPDFPTGA+I+    +   YATG+G IV+RG  
Sbjct: 183 LQEVVNAIEMLIENPEATIADLLRIIKGPDFPTGALIVNGNELTEVYATGKGRIVLRGKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H E+       +V+TEIPY V+KAA++E+IA    +   + I ++RDESD+ G R+V+E+
Sbjct: 243 HFEEGKR-FNNVVITEIPYNVSKAALIEEIASYAEKNPKMMIKNIRDESDKNGLRIVVEI 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            + A+A++ILN LY++TSLQ+ FSV M+ ++G +P+   L  +LKAF+  R +V+ +R +
Sbjct: 302 PKNANAEIILNNLYKHTSLQTSFSVQMLVIDGRRPKLMNLSQLLKAFIKHRFDVIRKRAE 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L     RAH+L G+  A   +  VV I+R S + E A + L++               
Sbjct: 362 YELKVYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIE--------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + ++  Q +AIL++RL RLTGL  + ++ E + L  +I++  DILS  
Sbjct: 407 -----------ALSITNEQAKAILDMRLGRLTGLEIEKLQGEYSQLIKKIEDVKDILSRD 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVP 552
            R+  ++ QEL  +K +    RRT+I           ED I  ED+V+T++  GY+K   
Sbjct: 456 ERVYNVMYQELEELKKKYADERRTKIENITDSLSYTPEDLIPNEDVVITLTEKGYLKSTS 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  YR+QRRGGKG  G    ++D +  +     H+  LF +S G  Y  K + + +    
Sbjct: 516 LKDYRSQRRGGKGIVGARTAEDDEILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRD 575

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +GK +   L+L + E + T++ F E         +V  TK G ++R  L +F      G
Sbjct: 576 TKGKPIRAYLNLEEDESVLTMISFDEW-----KGDLVLVTKSGRIKRTPLKEFENTTSRG 630

Query: 673 KIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             A+     D ++S     ++ + I++ TK G  +RFP+  +R   GR+++GV GI L +
Sbjct: 631 IRAITFSDSDVVVSATLSSSESDQIIIATKNGMAIRFPLKDVRQM-GRSAMGVIGIRLRE 689

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+ M  V                                                  
Sbjct: 690 KDEVVGMVNVPD------------------------------------------------ 701

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDN 850
               +   ILT++ +GFGKRT   D+R+ +R G GI+     +  + G L  +  V +  
Sbjct: 702 ----ENCEILTITVRGFGKRTPVNDYRVQSRGGVGIKTMPGVE--KAGQLCGIDIVADPK 755

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +I+++  G  IR  ++ +   SR  +GV I   + D+ V     + 
Sbjct: 756 SDVIVMTKNGQSIRFNLSTVSQLSRTARGVKIVDLSGDDEVSHFAVVE 803



 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 89/214 (41%), Gaps = 8/214 (3%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADAD 747
               E+ ++  T+ G      +   R    R   G+ G   A+ D++++     +H+   
Sbjct: 495 LIPNEDVVITLTEKGYLKSTSLKDYRS-QRRGGKGIVGARTAEDDEILTVCTSKMHSQTL 553

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           +         +      ++G   +   ++   ++E + S          +  ++ V++ G
Sbjct: 554 FVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTMISFDEWKGDLVLVTKSG 613

Query: 808 FGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
             KRT   +F   ++R   GIRA   S  + +  + A    +++DQII+ +  G  IR P
Sbjct: 614 RIKRTPLKEFENTTSR---GIRAITFSDSDVV--VSATLSSSESDQIIIATKNGMAIRFP 668

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           + ++R   R+  GV+     + + VV +  + + 
Sbjct: 669 LKDVRQMGRSAMGVIGIRLREKDEVVGMVNVPDE 702


>gi|116668575|ref|YP_829508.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
 gi|116608684|gb|ABK01408.1| DNA gyrase subunit A [Arthrobacter sp. FB24]
          Length = 902

 Score =  762 bits (1966), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/930 (36%), Positives = 485/930 (52%), Gaps = 104/930 (11%)

Query: 1   MTEHIISSDEEEE-------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRD 47
           M++       +                 +  V +  EMQ SYL YA+ VI+GRA+PD+RD
Sbjct: 1   MSDETPEVPADSAGPVEPVLEGDVLVDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRD 60

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M   G   ++ + KCAR+ GEVMG+YHPHG+ AIYDAL R+ QDW++R
Sbjct: 61  GLKPVHRRVLYAMFDGGYRPDRSFNKCARVVGEVMGQYHPHGDTAIYDALVRLIQDWTMR 120

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L  GQGNFGS   D  AA RYTE ++   A  ++ D+ ++TVDF+ NYDG  QEP +L
Sbjct: 121 YPLALGQGNFGSPGNDGAAAPRYTETKMAPLAMEMVRDIDEETVDFQDNYDGKNQEPTIL 180

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGP 223
            AR+PN+LVNG  GIAVGMATNIP HNL EV DG    + NP       L+ L+  I+GP
Sbjct: 181 PARFPNLLVNGSSGIAVGMATNIPPHNLREVADGVQWYLANPTASREELLEELLLRIKGP 240

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DFPTGA ILG  GI++AY TGRGSI +R V ++E+    R  +VVTE+PYQ N   +  K
Sbjct: 241 DFPTGATILGHKGIEDAYRTGRGSITMRAVVNVEELE-GRTCLVVTELPYQANPDNLAIK 299

Query: 284 IAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           IAELV++ +I  IADLRDE S R G R+VI LKR A A V+LN LY++T LQ  F+ NM+
Sbjct: 300 IAELVKDGKISGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFAANML 359

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           A+    P   +L   ++ +VA + +V+ RRT+Y L KA + AH+L  L  A+  LDEV+ 
Sbjct: 360 AIVDGVPRTLSLDAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIA 419

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S   E AR  LMQ                           + + E+Q RAIL+++L
Sbjct: 420 LIRASNTTEAARDGLMQ--------------------------LLDIDELQARAILDMQL 453

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RL  L R  I++    L   I E   IL+S  R   II  EL  +  +    RRT+I+ 
Sbjct: 454 RRLAALERQKIQDRHAELEALIAEYNSILASEERQREIISTELSEIVAKHGDDRRTKILM 513

Query: 523 -GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
               DM  ED I  E+MVVT++  GYVKR     YR+Q+RGGKG  G  +R +D V   F
Sbjct: 514 GFDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFF 573

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + +TH  +LFF++LG VY+ K + L      A+G+ + N+L+    E I  ++   + + 
Sbjct: 574 VTTTHHWLLFFTNLGRVYRAKAYELVEAGRDAKGQHVANLLAFQPDEHIAQVLDLRDYQH 633

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
                Y+V ATK G V++                 +L+  D                   
Sbjct: 634 ---APYLVLATKRGLVKKT----------------RLEDYDTNR---------------- 658

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
                              S GV  I+L  GD+++S  +V   D                
Sbjct: 659 -------------------SAGVIAINLRDGDELVSAQLVSETDDLMLVSRMGQSIRFTA 699

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                      TS            E    ++     F+  V+E G+ KRT+  ++R+  
Sbjct: 700 TDDALRPMGRATSGVT-GMKFREDDELLAADVVKDGSFVFIVTEGGYAKRTAVEEYRLQG 758

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R G GI+     +  E G LV    V + D++++V + G ++R  V  +    R T GV+
Sbjct: 759 RGGLGIKVGKYQE--ERGHLVGALIVQEEDEVLVVMEGGKVVRSSVAGVPAKGRDTMGVI 816

Query: 882 IFSTAKDERVVSVERIRESEIV-DEAESTE 910
                K++R++ V R  E  +  +EAE+ +
Sbjct: 817 FAKPDKNDRIIEVARNSERGLEGEEAEAID 846



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 95/270 (35%), Gaps = 15/270 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                 +V  +  G VK+  L  Y   R  G     + +RD D +    +VS    ++  
Sbjct: 631 YQHAPYLVLATKRGLVKKTRLEDYDTNRSAG--VIAINLRDGDELVSAQLVSETDDLMLV 688

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S +G   +       +  P  R  + +  +   + + +             +  +V   T
Sbjct: 689 SRMGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVK------DGSFVFIVT 741

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708
           + G  +R  + ++ ++   G + +K+    E    ++      +E+++L+  + G+ VR 
Sbjct: 742 EGGYAKRTAVEEY-RLQGRGGLGIKVGKYQEERGHLVGALIVQEEDEVLVVMEGGKVVRS 800

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ +    GR+++GV      K D++I +A       + +E         A    ++GD
Sbjct: 801 SVAGV-PAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEGEEAEAIDPENPAGSPAVAGD 859

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              +                   E      
Sbjct: 860 DVTLAEGAGSHGGSAEADSAPAVESDESSD 889


>gi|159035682|ref|YP_001534935.1| DNA gyrase subunit A [Salinispora arenicola CNS-205]
 gi|157914517|gb|ABV95944.1| DNA gyrase, A subunit [Salinispora arenicola CNS-205]
          Length = 839

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/872 (38%), Positives = 495/872 (56%), Gaps = 55/872 (6%)

Query: 1   MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E               I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPDAPETGGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ W+LR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225
           R PN+LVNG  GIAVGMAT IP HNL E+       +++P+      L+AL+ I++GPDF
Sbjct: 181 RIPNLLVNGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+G+ GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGQAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL+RE ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIREGKLGGIADIRDESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++++V  + EV+ RRT + L KA +RAH+L GLA A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRSYVEHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  + AR+ L+                            + + E+Q  AIL+++L R
Sbjct: 421 RRSPTVDDARQGLI--------------------------RLLDIDEIQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+I+   
Sbjct: 455 LAALERQRILDDLVKLELEIADFKDILAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  +  YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+   + +    
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQV--- 631

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ KL +F      G IA+ L   DE++       E D+LL +K   
Sbjct: 632 APYLVLATKNGVVKKTKLEEFDSNRSGGIIAINLREDDELVGAALVAPEQDLLLVSKNAL 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761
            +RF  S   +R   GR + GV G+  ++ D++++M +V H  D        Y K    +
Sbjct: 692 AIRFNASDEALRPM-GRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIE 750

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
              + G   +       +   G +       +   +  +  ++  G   RT     R + 
Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPDDELFAITSNGGVIRTPVKPVRRTR 807

Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R+  G++  D+     I  +      ++ D+
Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837


>gi|224539991|ref|ZP_03680530.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518381|gb|EEF87486.1| hypothetical protein BACCELL_04903 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 816

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/860 (38%), Positives = 515/860 (59%), Gaps = 86/860 (10%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ILFGMM +G   +K Y K AR+ GEV+GKYHPHG++++Y AL RMAQ W++R ++++GQG
Sbjct: 8   ILFGMMGLGNTSDKPYKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQG 67

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           N+GSVDGD  AA RYTECRL+K    ++ DL K+TVD + N+D S QEP V+  R PN+L
Sbjct: 68  NYGSVDGDSAAAMRYTECRLRKIGEDMMQDLDKETVDMQSNFDDSLQEPTVMPTRIPNLL 127

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATN+PTHNL EV+D C+A I+N DI+++ LM  ++ PDFPTG  I G +
Sbjct: 128 VNGASGIAVGMATNMPTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIYGMS 187

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           G++ AY TGRG +++R  + IE +S   ++IV+TEIPY VNKA +++ IA+L  +K+I  
Sbjct: 188 GVREAYLTGRGRVIMRARAEIETSST-HDKIVITEIPYGVNKAELIKNIADLANDKKIEG 246

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I++  DESDR+G R+VI++KR A+A V+LN+LY+ T LQ+ FSVN VAL   +P    L 
Sbjct: 247 ISNANDESDREGMRIVIDIKRDANASVVLNKLYKMTLLQTSFSVNNVALVHGRPRLLNLK 306

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ++K FV  R EVV+RRT+Y L KA++RAH+L GL IA  N+DEV+RIIR +  P  A  
Sbjct: 307 DMIKYFVEHRHEVVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIV 366

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++R                            L+E+Q+RAI+E+RL +LTGL +D +  
Sbjct: 367 GLIER--------------------------FQLTEIQSRAIVEMRLRQLTGLMQDQLHA 400

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   +   I    +ILS+      +I  EL+ VK +    RR+ IV    +   ED    
Sbjct: 401 EYEEVMKMIAYYEEILSNDELCRKVITDELIEVKAKYGDERRSEIVYSSEEFNPEDFYAD 460

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ++M++T+SH+GY+KR PLS +RAQ RGG G  G   RD DF+  ++  + H +++FF+  
Sbjct: 461 DEMIITISHMGYIKRTPLSEFRAQNRGGVGSKGTDTRDADFIEHIYPATMHNTMMFFTQK 520

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATK 653
           G  Y  KV+ +P G+  ++G+A+ N+L+++  + +   +      D    N+ YV+F TK
Sbjct: 521 GKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDAVNAYLRVKNLSDTDFINSHYVLFCTK 580

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G +++  L  + +  ++G  A+ +   D ++ V     +N+I++  + G+ +RF  SA+
Sbjct: 581 NGVIKKTLLEQYSRPRQNGVNAITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAV 640

Query: 714 RVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           RV  GR + GVRG++L +   D+V+ M  +   +A                         
Sbjct: 641 RVM-GRTATGVRGMTLDEDGQDEVVGMICIKDPEA------------------------- 674

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                     + I+ VSE+G+GKR+   D+R +NR GKG++  +
Sbjct: 675 --------------------------ETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMN 708

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DER 890
           ++  ++ G LV +  V D++ +++++  G  IR+ V ++RI  RAT+GV + +  K ++ 
Sbjct: 709 IT--DKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDE 766

Query: 891 VVSVERIRESEIVDEAESTE 910
           + SV ++    + DE    +
Sbjct: 767 IGSVCKVTSESMEDEIPVDD 786



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 110/251 (43%), Gaps = 12/251 (4%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V+  +  G +K+  L  Y   R+ G   + + +R++D V ++ + +    ++  +  G 
Sbjct: 574 YVLFCTKNGVIKKTLLEQYSRPRQNG--VNAITIREDDRVIEVRMTNGDNEIIIANRNGR 631

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             +     + +    A G   +  L  +  + +  ++   +         ++  ++ G  
Sbjct: 632 AIRFHESAVRVMGRTATGVRGMT-LDEDGQDEVVGMICIKD----PEAETIMVVSEQGYG 686

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R+ + D+ + NR GK    ++  D+    +++++ T +ND+++  K G  +R  ++ +R
Sbjct: 687 KRSDIEDYRKTNRGGKGVKTMNITDKTGKLVTIKSVTDDNDLMIINKSGITIRLKVADVR 746

Query: 715 VFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           +  GR + GVR I+L K  D++ S+  V     + +  +            + G+ E+  
Sbjct: 747 IM-GRATQGVRLINLEKRNDEIGSVCKVTSESMEDEIPVDDENSPIPTINEVEGEEEDYN 805

Query: 774 SLKNDSSVEGN 784
           S    ++ +  
Sbjct: 806 SDNKVNNEDEE 816


>gi|197294339|ref|YP_001798880.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
 gi|171853666|emb|CAM11549.1| DNA gyrase alpha subunit [Candidatus Phytoplasma australiense]
          Length = 819

 Score =  761 bits (1965), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/892 (37%), Positives = 520/892 (58%), Gaps = 84/892 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +    +  I  V+++ EM+ S+L+YA++VI+ RA+PD++DGLKPV RRIL+GM ++ V 
Sbjct: 4   QNPNLNQGKIKEVNLSAEMRKSFLSYAMSVIVARALPDIQDGLKPVQRRILYGMKELSVY 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N  Y K ARI G+VMGKYHPHG+++IY+A+ RM+QD+S R  L++G GNFGS+DG   A
Sbjct: 64  SNSSYKKAARIVGDVMGKYHPHGDSSIYEAMVRMSQDFSYRYPLVDGHGNFGSIDGHKAA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE ++ K A  L+ ++ K+T++F  NYDGS +EP+VL    PN+L+NG  GIAVGM
Sbjct: 124 AMRYTEVKMAKIAMELIKNIDKETIEFVDNYDGSEKEPLVLPTAIPNLLINGATGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT IPTHNL EVVDG +A I + +I +  LM+ I+GPDFPTG  +LG  G++NAY TG+G
Sbjct: 184 ATKIPTHNLAEVVDGLIAYIKDKNISILGLMQYIKGPDFPTGGELLGLKGLENAYKTGQG 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S++I+  +HI +    +  IVVTEIPYQ+ K+A++EKIA LV++K I  I DLRDES RQ
Sbjct: 244 SVIIKAKTHILEEK-GKTLIVVTEIPYQIKKSALIEKIAFLVKDKVIEGITDLRDESSRQ 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++VIELK+ A++ VILNQLY+++ L+  F +NMVAL   KP+  +L  IL+AF  FR 
Sbjct: 303 GMKIVIELKKNANSKVILNQLYKHSPLRISFGINMVALVDKKPQLVSLKTILEAFFNFRI 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V+ ++  + L KA+ R H++      + ++   +++I+ S + + A+++LM +      
Sbjct: 363 QVINKQKFFELKKAQARKHLVFAFLTILKDIQNAIKLIKNSSDTKDAQQKLMDQ------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                    +Q++AILE+ L RL+      +  E   L  EI E
Sbjct: 417 --------------------YQFDAIQSKAILEMSLQRLSNQETQKLFIEEQKLTKEIAE 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-DEDCIVREDMVVTVSHL 545
           C  I+ S+ +   I+++ELL +K +    RRT +       + DED I ++++++T+++ 
Sbjct: 457 CQSIIESQPKKEKILEKELLEIKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNK 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K      YR Q+RGGKG +G+ + +EDF+  L   STH  +LFF++ G VY+ K ++
Sbjct: 517 GYIKVTDAEFYRQQKRGGKGAAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQ 576

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           + +    ++G  L+N+L+L  GE +T+       +    + Y+ FATK G V++  L ++
Sbjct: 577 INLSDKSSKGIPLVNLLNLKPGETLTSCASVKNFD--QPDNYLFFATKKGIVKKTSLKEY 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  +GKIA+ L   DE+L+V       +I+L +  G  + F  S  R    R S GV 
Sbjct: 635 SNIRENGKIAIVLRDDDEVLTVANTNGRQNIILASNNGNAICFDESQTR-KTSRQSQGVI 693

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L KG+ +I  A+                                             
Sbjct: 694 GMDLKKGEFLIGAALFDPN----------------------------------------- 712

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     K+Q IL ++EKG+GK TS   +RI +R+GKG +   ++  ++ G L+A+ 
Sbjct: 713 ---------SKDQSILVMTEKGYGKITSVNQYRIQSRNGKGSKTIKIN--SKTGRLIALK 761

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVER 896
               +  +I+ SDKG +IRV +++I+    +AT+G  I       + V V  
Sbjct: 762 TAASSQDLIISSDKGQVIRVSISDIKNTKHKATQGTKIIKLKTGHKAVLVAV 813



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 81/244 (33%), Gaps = 22/244 (9%)

Query: 676 MKLDSRDEILSV-----ETCTQEND-------ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +K   +DE  +V         ++ D       I+  T  G          R    R   G
Sbjct: 478 IKKKYQDERRTVLNFDAALDDKDEDLIEQKEIIITITNKGYIKVTDAEFYRQQK-RGGKG 536

Query: 724 VRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             G+ + + D +  +      +         R+  +K         S     + +L N  
Sbjct: 537 AAGMKIYEEDFIEHLLFTSTHNFLLFFTNKGRVYQLKGYQINLSDKSSKGIPLVNLLNLK 596

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E   S    +     + ++   ++KG  K+TS  ++     +GK   A  +       
Sbjct: 597 PGETLTSCASVKNFDQPDNYLFFATKKGIVKKTSLKEYSNIRENGK--IAIVLRD---DD 651

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++ V   N    IIL S+ G  I    ++ R  SR ++GV+     K E ++       
Sbjct: 652 EVLTVANTNGRQNIILASNNGNAICFDESQTRKTSRQSQGVIGMDLKKGEFLIGAALFDP 711

Query: 900 SEIV 903
           +   
Sbjct: 712 NSKD 715


>gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331]
          Length = 816

 Score =  761 bits (1964), Expect = 0.0,   Method: Composition-based stats.
 Identities = 345/900 (38%), Positives = 498/900 (55%), Gaps = 86/900 (9%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +      +   +  + + +EM+ S+L Y+++VI+ RA+PD RDGLKPVHRRIL+ M   G
Sbjct: 1   MPDEPTPDASNVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD- 123
              ++ +VKCA++ G+VM ++HPHG+AAIYDAL RMAQD+SL   LI+G GNFGS D   
Sbjct: 61  YRPDRPHVKCAKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPST 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTECRL   A  LL  + +DTVDF PNYD    EP VL AR+PN+LVNG  GIA
Sbjct: 121 GPAASRYTECRLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMAT IP+HNLGEVVD    +ID+P+  +D LM  + GPDFPTG +ILGR GI++AY T
Sbjct: 181 VGMATQIPSHNLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIILGRDGIRDAYRT 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS+ +R V+ IE+      QIVVTEIP+Q +   + +KI  LV EK +  I D+++ S
Sbjct: 241 GRGSVKLRAVATIEEARSG-YQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFS 299

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                R VIELKR A+ +V+LN LYR T LQ+ F + M+AL    P    L+G+ + +V 
Sbjct: 300 AGSETRFVIELKRDANPNVVLNNLYRLTPLQTSFPIQMLALVDGAPRTLNLLGLCQIYVD 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+ RR+++ L KAR+R H++ GL   +  LD V+  IR                  
Sbjct: 360 HQREVIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRA----------------- 402

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                        ++           SE+Q   IL++ L RLT LGR+++  E  +L   
Sbjct: 403 --------SEDRAAARAALMAEPFGFSELQANHILDMTLGRLTRLGREELEEEAATLRAT 454

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+   RL  ++K E+L+   E    RRTR      D   ED I  E +VV +S
Sbjct: 455 IAELEAILADAQRLSAVVKDEMLAATAEYRQARRTRFEVDPGDFAAEDLIEDEPIVVLIS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K VP S ++AQ RGG+G  G  ++DED +  +   S  + +L FSS G VY+ + 
Sbjct: 515 RSGYIKAVPESSFKAQGRGGRGVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRG 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP     ARG AL+N++ L   ERIT++M   +      +  +VF T++G V+R  ++
Sbjct: 575 YELPKLERSARGTALVNLVPLADDERITSVMGTKDFP---EDADLVFFTRNGMVKRTAMA 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++ +  R G IA+ +   DE++SV   T+E+D ++ TK GQ +RFP++ +R   GR + G
Sbjct: 632 EYARSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVR-RTGRATAG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR I  A GD +++  ++                                          
Sbjct: 691 VRSIRRADGDWIVAGGLI------------------------------------------ 708

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L V+ +G+GKRT    F + +R G GIR   +++    G LVA
Sbjct: 709 -----------EDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTER--KGELVA 755

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V   D++++VS +G +IRV + +I    R   GV + S   +E V SV  + ES   
Sbjct: 756 AAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVPESGTD 815


>gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
 gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA]
          Length = 932

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 349/895 (38%), Positives = 521/895 (58%), Gaps = 62/895 (6%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  EMQ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G   N+ ++K AR  G+
Sbjct: 91  LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + R+AQ +S+R+ L++G GNFGS+DGD  AA RYTE RL K A 
Sbjct: 151 VIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRLDKVAM 210

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL K+TVDF+PNYD S +EP VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D
Sbjct: 211 ELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETID 270

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               ++DNPD+  + LM+ + GPDFPTG +I+G+ GI++AY TGRGS+ +R    +E+  
Sbjct: 271 ATCLMLDNPDVTTEELMKALPGPDFPTGGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGK 330

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             R  IVVTEIPYQVN+  +LEK+ ELVREK++ +I+++ D +DR G  ++I+LK+ A  
Sbjct: 331 NGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKKDAIP 390

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN+LY++T LQ  F V M++L    P   +L  +L  ++A +EEV+VRRT+Y L KA
Sbjct: 391 QVVLNKLYKHTQLQVGFGVIMLSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +RAH+L GL IA+ N+DE++ IIR S   + A   + +R                    
Sbjct: 451 EERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTER-------------------- 490

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L++ QT AILE+RL RLTGL    I +EL  L   I     +LS    +  I
Sbjct: 491 ------FALTDKQTAAILEMRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEI 544

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           IK+ELL VK +  +PRRT + E   D++ ED I  E MVVT++  GYVKR+P++ YR Q+
Sbjct: 545 IKEELLEVKKKFGSPRRTLLSEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQK 604

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG SGV ++D D+V  LF+ STH+ +LFFS+ G VY+ KV+ LP  S  ARG A++N
Sbjct: 605 RGGKGMSGVNLKDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVN 664

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L +GE I+ ++   +     ++ Y++FAT+HG V++  +  + +  R G IA+ L  
Sbjct: 665 LLPLEKGETISAVIATKDFP---SDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKD 721

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D ++SV+       +L+ +  G+ + +    +R   GR+++GVRG+++    +V+ M I
Sbjct: 722 NDRLISVKRVAPGEKVLMVSSAGKAIMWDEGEVRAM-GRDTMGVRGMNVPPIAKVLGMEI 780

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                  +          +                    + +  +      ++  ++  I
Sbjct: 781 AQPDTDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLA--VMKIVAEDDEI 838

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + +SE+G   RT         RS +G+     +  + + A+              +S +G
Sbjct: 839 MIMSEEGVCVRTPVSGISELGRSTQGVCVMKTADKDRVTAVA-------------ISSRG 885

Query: 861 TLIRVPVNEIRIASRATKG--VVIFSTAKD--ERVVSVER-IRESEIVDEAESTE 910
                         +   G  V      ++  + +        E E V+EAE+ E
Sbjct: 886 K------------KKKASGAQVEGEELDENAIDELEDGAEGTAEIESVEEAENAE 928


>gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A,
           chloroplastic/mitochondrial; Flags: Precursor
          Length = 939

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/924 (37%), Positives = 522/924 (56%), Gaps = 97/924 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 79  KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTE
Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198

Query: 133 CRLQKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           CRL     F   D+        VDF PN+D S +EP +L AR P++L+NG  GIAVGMAT
Sbjct: 199 CRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +
Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRV 317

Query: 249 VIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           V+RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR 
Sbjct: 318 VMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRS 377

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKRGA   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR 
Sbjct: 378 GMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRC 437

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR ++ L++A +R H++ G+ I + NLD V++IIR + N   AR  L++       
Sbjct: 438 SVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------ 491

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  A+L++ L +LT L R    +E  SL  EI +
Sbjct: 492 --------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISK 531

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             ++LS++  +  +I QE   +K++  TPRR+ I +    +++D D I  E+M++ +S  
Sbjct: 532 LNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEK 591

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + ++
Sbjct: 592 GYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYK 651

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G +++  L+ F
Sbjct: 652 IPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG---EDQYLVMLTVNGYIKKVPLNAF 708

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R   GR + GV 
Sbjct: 709 SAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGVL 767

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L +GD++ SM I+     +  E    ++ +S                          
Sbjct: 768 AMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSP------------------------- 802

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++L +++ G GKR     FR  N +  G++   +       +L AVF
Sbjct: 803 ------------PWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDC---SLAAVF 847

Query: 846 PV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++       ++ S   I
Sbjct: 848 VVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLI 907

Query: 898 -----------RESEIVDEAESTE 910
                        + ++ EAE  E
Sbjct: 908 SAAEEEEEQDPESASLISEAEEPE 931



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 139/433 (32%), Gaps = 56/433 (12%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           ++A+  +  +  L   ++N   + ++I         +    +RS+           +DD 
Sbjct: 520 DEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSAST---EVDDL 576

Query: 438 SYTIGSDGTMYLSEV-------------QTRAILELRLARLTGLGR-------DDIRNEL 477
                 +  + LSE              Q R  +   + ++                + L
Sbjct: 577 DIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVL 636

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                 I                    L+ +    D  R T IV              + 
Sbjct: 637 YFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG-------EDQ 689

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +V ++  GY+K+VPL+ + A R  G     + +   D +  +        V   S  G 
Sbjct: 690 YLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQNGM 747

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY---------- 647
           V      +L     + RG   +  + L +G+++ ++   P    +    Y          
Sbjct: 748 VIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPW 804

Query: 648 VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQENDIL 697
           ++F   +G  +R  L+ F     NR G    KL     + +V             +  ++
Sbjct: 805 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 864

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L ++ G   R  +  I     R++ GV  + L    ++ S +++  A+ + ++       
Sbjct: 865 LVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASL 923

Query: 758 MSAQRRLISGDTE 770
           +S        D E
Sbjct: 924 ISEAEEPEKQDPE 936


>gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
 gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440]
          Length = 839

 Score =  760 bits (1963), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/872 (38%), Positives = 496/872 (56%), Gaps = 55/872 (6%)

Query: 1   MTEHIISSDEEE-----------EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E               I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPDVPETAGAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ W+LR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L+  A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225
           R PN+LVNG  GIAVGMAT IP HNL E+       +++P+      L+AL+ I++GPDF
Sbjct: 181 RIPNLLVNGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+GR GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGRAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++ +VA + EV+ RRT + L KA +RAH+L GLA A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRYYVAHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  + AR+ L+                            + + E+Q  AIL+++L R
Sbjct: 421 RRSPTVDDARQGLI--------------------------RLLEIDEIQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+I+   
Sbjct: 455 LAALERQRILDDLAKLELEIADFKDILAKPERQRRIVSEELGEIVAKWGDDRRTQIIPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  +  YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQRRGGKGVSGASLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+   + +    
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEISDYQV--- 631

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ +L +F      G IA+ L   DE++       E D+LL +K   
Sbjct: 632 APYLVLATKNGVVKKTRLEEFDSNRSGGIIAINLREDDELVGAALVAPEQDLLLVSKNAL 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761
            +RF  +   +R   GR + GV G+  ++ D++++M +V H  D        Y K    +
Sbjct: 692 AIRFNATDEALRPM-GRATSGVIGMRFSEDDELLAMEVVRHGLDVLVATNGGYAKRTPIE 750

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
              + G   +       +   G +       +   +  +  ++  G   RT     R + 
Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPDDELFAITSNGGVIRTPVKPVRRTR 807

Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R+  G++  D+     I  +      ++ D+
Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837


>gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
 gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1]
          Length = 823

 Score =  760 bits (1962), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/841 (42%), Positives = 506/841 (60%), Gaps = 42/841 (4%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   +ITDEM+++YL YA++VI+ RA+PD RDGLKPV  RIL+GM  MG+  N+ + KCA
Sbjct: 6   VRPRNITDEMRSAYLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GE++GK HPHG++A+YDAL R+AQ W++R  L+EGQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGEILGKMHPHGDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L D+ K+TVDFR N+DG ++EPVVL AR PN+L+NG  GIAVGMATNIP HNL
Sbjct: 126 TPIAEEMLADIEKNTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV D    +IDNPD  ++ L  I+ GPDFPT  +ILG  GI NAY+TGRG I IR  +H
Sbjct: 186 NEVCDAITHLIDNPDATIEDLARIMPGPDFPTAGMILGTEGIMNAYSTGRGHITIRAKAH 245

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ +     IVVTE+PYQVNKA + E+IAEL R+++I  I D+RDESDR G R+VI LK
Sbjct: 246 IEEAARGAFHIVVTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILK 305

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVAFREEVVVRRT 373
           + A    +LN LY++T +Q+ F VNM+AL     +P   TL  +L+ ++  R EV+ RRT
Sbjct: 306 QDAQPKKVLNALYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+KAR RAH+L GL IA+ NLD V+  IR S + + AR  LM               
Sbjct: 366 EFDLDKARARAHILEGLKIAIDNLDAVIATIRNSRSRDHARTNLM--------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q  AILE++L RL  L R  I  E   +   I E  DIL++
Sbjct: 411 -----------NGFALSEAQANAILEMQLGRLAALERQRIEEEYREVIQLIGELEDILAN 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++L +IKQ+L  +K +   PRRTRI+     ++ DED I    +++T++  GYVKR  
Sbjct: 460 PRKILHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVRVLITLTDRGYVKRQS 519

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             +YR QRRGG+G  G  +R++D V  +   ST   +LFF+  G VY+ K   LP  S  
Sbjct: 520 PDIYRTQRRGGRGIRGATIREQDVVRHILAASTMDDLLFFTDRGKVYQIKAHELPDASRT 579

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  L+N+++L  GE++T+++  P+ E      Y++ AT  G ++R  + ++ Q+  +G
Sbjct: 580 AKGLPLVNLIALEPGEQVTSVLAVPDFE---KAEYLIMATVRGKIKRTSIKEYSQVRSNG 636

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA+ L+  DE+  V       D+LLTT  GQ +RF    +R   GR + GV GI+LA+G
Sbjct: 637 LIAIGLEDGDELGWVAMTQGHEDVLLTTARGQTIRFRQEEVRPM-GRPATGVIGIALAEG 695

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+SM +     A          +   +R  +     +  +     ++     +E    
Sbjct: 696 DRVVSMDLARENAALLVVTA----NGYGKRTALEEYPVKGRATGGVITIRLRPGDEVAVA 751

Query: 793 LKLKEQFILT-VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             + E  +LT ++E G   RT +    +  R+ +G+   +++  +     VA   V + D
Sbjct: 752 HVVHEHSLLTFITESGMVMRTEADGISMFGRNTQGVTIVNLAPNDR----VAALCVEEPD 807

Query: 852 Q 852
           +
Sbjct: 808 E 808



 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 110/323 (34%), Gaps = 58/323 (17%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQE 693
             +++   +   ++  T  G V+R     +    R G+      +  +D +  +   +  
Sbjct: 494 VSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDVVRHILAASTM 553

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADY-- 748
           +D+L  T  G+  +     +   A R + G   V  I+L  G+QV S+  V   +     
Sbjct: 554 DDLLFFTDRGKVYQIKAHEL-PDASRTAKGLPLVNLIALEPGEQVTSVLAVPDFEKAEYL 612

Query: 749 ----------------------------------------------DERICYMKHMSAQR 762
                                                         D  +   +  + + 
Sbjct: 613 IMATVRGKIKRTSIKEYSQVRSNGLIAIGLEDGDELGWVAMTQGHEDVLLTTARGQTIRF 672

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R          +                 +L  +   +L V+  G+GKRT+  ++ +  R
Sbjct: 673 RQEEVRPMGRPATGVIGIALAEGDRVVSMDLARENAALLVVTANGYGKRTALEEYPVKGR 732

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +  G+    +        +     V+++  +  +++ G ++R   + I +  R T+GV I
Sbjct: 733 ATGGVITIRLRPG---DEVAVAHVVHEHSLLTFITESGMVMRTEADGISMFGRNTQGVTI 789

Query: 883 FSTAKDERVVSVERIRESEIVDE 905
            + A ++RV ++  + E +  +E
Sbjct: 790 VNLAPNDRVAALC-VEEPDESEE 811



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 75/169 (44%), Gaps = 6/169 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            ++       D      K +   ++ ++    +    +    +     E   ++L    +
Sbjct: 445 EVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDPRRTRIIPDADGEVSDEDLIPDVR 504

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++T++++G+ KR S   +R   R G+GIR   + + + +  ++A   +   D ++  +D
Sbjct: 505 VLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDVVRHILAASTM---DDLLFFTD 561

Query: 859 KGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           +G + ++  +E+  ASR  KG   V + +    E+V SV  + + E  +
Sbjct: 562 RGKVYQIKAHELPDASRTAKGLPLVNLIALEPGEQVTSVLAVPDFEKAE 610


>gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group]
          Length = 931

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/901 (37%), Positives = 515/901 (57%), Gaps = 86/901 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 79  KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTE
Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198

Query: 133 CRLQKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           CRL     F   D+        VDF PN+D S +EP +L AR P++L+NG  GIAVGMAT
Sbjct: 199 CRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +
Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRV 317

Query: 249 VIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           V+RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR 
Sbjct: 318 VMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRS 377

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKRGA   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR 
Sbjct: 378 GMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRC 437

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR ++ L++A +R H++ G+ I + NLD V++IIR + N   AR  L++       
Sbjct: 438 SVIERRARFKLSQALERKHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE------ 491

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  A+L++ L +LT L R    +E  SL  EI +
Sbjct: 492 --------------------FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISK 531

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHL 545
             ++LS++  +  +I QE   +K++  TPRR+ I +    +++D D I  E+M++ +S  
Sbjct: 532 LNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIPNEEMLLILSEK 591

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + ++
Sbjct: 592 GYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYK 651

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G +++  L+ F
Sbjct: 652 IPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG---EDQYLVMLTVNGYIKKVPLNAF 708

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R   GR + GV 
Sbjct: 709 SAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGVL 767

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L +GD++ SM I+     +  E    ++ +S                          
Sbjct: 768 AMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSP------------------------- 802

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                        ++L +++ G GKR     FR  N +  G++   +       +L AVF
Sbjct: 803 ------------PWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDC---SLAAVF 847

Query: 846 PV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++       ++ S   I
Sbjct: 848 VVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASLI 907

Query: 898 R 898
            
Sbjct: 908 S 908



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 65/427 (15%), Positives = 137/427 (32%), Gaps = 56/427 (13%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           ++A+  +  +  L   ++N   + ++I         +    +RS+           +DD 
Sbjct: 520 DEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSAST---EVDDL 576

Query: 438 SYTIGSDGTMYLSEV-------------QTRAILELRLARLTGLGR-------DDIRNEL 477
                 +  + LSE              Q R  +   + ++                + L
Sbjct: 577 DIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVL 636

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                 I                    L+ +    D  R T IV              + 
Sbjct: 637 YFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG-------EDQ 689

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +V ++  GY+K+VPL+ + A R  G     + +   D +  +        V   S  G 
Sbjct: 690 YLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQNGM 747

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY---------- 647
           V      +L     + RG   +  + L +G+++ ++   P    +    Y          
Sbjct: 748 VIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPW 804

Query: 648 VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQENDIL 697
           ++F   +G  +R  L+ F     NR G    KL     + +V             +  ++
Sbjct: 805 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 864

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L ++ G   R  +  I     R++ GV  + L    ++ S +++  A+ + ++       
Sbjct: 865 LVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASL 923

Query: 758 MSAQRRL 764
           +S     
Sbjct: 924 ISEAEEP 930


>gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 870

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/861 (38%), Positives = 491/861 (57%), Gaps = 53/861 (6%)

Query: 1   MTEHIISSDEEE-----EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +    +  +E        I +V +  EMQ SYL YA++VI+ RA+PD+RDGLKPVHRR
Sbjct: 1   MADENNPTTPDELAEGAAMRIEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M   G    K + KCAR+ G+VMG YHPHG+++IYDAL R+AQ WS+R+ L++  G
Sbjct: 61  VLYAMYDGGYRPEKGFYKCARVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS   DP AA RYTEC++   A  +L D+ ++TVDF+ NYDG  QEP VL AR+PN+L
Sbjct: 121 NFGSPGNDPAAAMRYTECKMAPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVI 231
           VNG  GIAVGMATNIP HNL EV +G    + NP+   + L+    + I+GPDFPTGA++
Sbjct: 181 VNGSAGIAVGMATNIPPHNLREVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALV 240

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           +GR GI+ AY TGRGSI +R V  +E+    R+ +VVTE+PYQVN   + +KIA+LV++ 
Sbjct: 241 VGRKGIEEAYRTGRGSITMRAVVEVEEIQ-GRQCLVVTELPYQVNPDNLAQKIADLVKDA 299

Query: 292 RIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P 
Sbjct: 300 RIGGIADVRDETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             +L   ++ +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   
Sbjct: 360 TLSLDAFIRNWVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTV 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +TAR  LM+                           + + E+Q  AILE++L RL  L R
Sbjct: 420 DTARGGLME--------------------------LLEIDEIQANAILEMQLRRLAALER 453

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
             I  E + L  +I E   IL+S  R   II +EL ++ ++    RR+++V    DM  E
Sbjct: 454 QKITQEHDELQAKINEYNAILASPERQRQIISEELTALVEKFGDDRRSKLVPFDGDMSIE 513

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  ED+VVT++  GY+KR     YR+Q+RGGKG  G  ++ +D V   F+ +TH  +L
Sbjct: 514 DLIAEEDIVVTITRGGYLKRTKTEDYRSQKRGGKGVRGTKLKQDDIVDHFFVSTTHHWLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           FF++ G VY+ K + LP    +ARG+ + N+L+    E+I  I+   + ++     Y+V 
Sbjct: 574 FFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQPDEQIARILAIRDYDAV---PYLVL 630

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQC 705
           ATK G V++  L D+      G IA+ L        DE++  E  + ++D+LL +K  Q 
Sbjct: 631 ATKSGLVKKTPLKDYDSPRSGGVIAINLREMEDGREDELIGAELVSADDDLLLISKKAQS 690

Query: 706 VRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +RF  +   +R   GR + GV+G+S  + D+++SM +V      +          S    
Sbjct: 691 IRFTATDESLRPM-GRATSGVKGMSFREDDELLSMNVVRPGTFVFTATDGGYAKRSNVDE 749

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                   +         +           +  E  IL ++  G   RT   + R + R 
Sbjct: 750 YRVQGRGGLGIKAAKIVEDRGSLVGALVVEESDE--ILAITLGGGVIRTRVSEVRETGRD 807

Query: 824 GKGIRATDVSKINEIGALVAV 844
             G++  ++ K     A+V +
Sbjct: 808 TMGVQLINLGKR---DAVVGI 825


>gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168]
          Length = 853

 Score =  760 bits (1961), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/900 (36%), Positives = 518/900 (57%), Gaps = 88/900 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E     I+ + I DEM+ S+L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+    
Sbjct: 40  ESITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGT 99

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+A++Y+++ RMAQ +SLR  L++G GNFGS+DGD  AA R
Sbjct: 100 SYKKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMR 159

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ +++ L K+TVDFRPNYD S  EP VL A++PN+LV+G  GIAVGM T 
Sbjct: 160 YTEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTK 219

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE++   +    NP I+++ L+  + GPDFPTGA I G+ GI  AY TG+GS +
Sbjct: 220 IPPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIYGKKGINQAYLTGKGSFI 279

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR  + IE  +  R +I+  EIPY+V K A++EK+A LVR K+I+ I D+RDES R G R
Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV E+K+G S ++ILN+LY  T LQ  +S+NM+AL    P+   L  I   ++  ++E+ 
Sbjct: 340 VVFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNGVPKLMNLAQIFNYYLEHQKEIN 399

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +R   + L KA ++ +VL G+ +AV N+DEV++II+ S + + A+ +L            
Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKL------------ 447

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L+  QT+AI+E+RL RLT L  + + NE+  L +EI E   
Sbjct: 448 --------------AHTYNLNSGQTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKS 493

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           I+ S  +L+ +I ++  +V  +   PRR+ I+  +  +++ED I  E ++++++   YVK
Sbjct: 494 IIDSPKKLIDLIIEQHKNVVAQFGDPRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVK 553

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           ++ L  YR Q RGG G        +D +  L I +T + +L  SS   ++K +  ++P G
Sbjct: 554 KMVLDEYRLQNRGGIGTLASNHYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDG 613

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q +G  ++N++ L + E I+ ++P       ++N +++  +  GN+++  LS F  I 
Sbjct: 614 SKQGKGIPILNLIKLEKNESISNLIP---WNQEYDNHWLITVSAFGNIKKTALSAFRNIT 670

Query: 670 RSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GKI +KL   D ++S        + +IL+ +  G   R+ I  +R  +GR ++GV+GI
Sbjct: 671 KNGKIGLKLVENDYLVSAFIAPNNPDLNILIGSSQGFVNRWSIKLLRD-SGRTAIGVKGI 729

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +G ++I                                                   
Sbjct: 730 KLEEGHKIIGAC------------------------------------------------ 741

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      FI ++S+KGFGK+T   ++R++ R+ KG+ + D     + G LV +  +
Sbjct: 742 -----FAFDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAK---KAGNLVFISAI 793

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +N + I+ + KG  IR+ ++ + I SR TKGV I +  K + + +V  I ++E   + E
Sbjct: 794 KNNQEAIITTKKGFAIRIDLDMVPIISRRTKGVKIITLKKGDEITAVSLISKNETEKQNE 853


>gi|256374167|ref|YP_003097827.1| DNA gyrase subunit A [Actinosynnema mirum DSM 43827]
 gi|255918470|gb|ACU33981.1| DNA gyrase, A subunit [Actinosynnema mirum DSM 43827]
          Length = 840

 Score =  759 bits (1960), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/866 (38%), Positives = 490/866 (56%), Gaps = 46/866 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +              +  EMQNSY+ YA++VI+GRA+PD+RDGLKPVH R+L+ M
Sbjct: 1   MSETTLPPIGGGSDRTEPRDLQQEMQNSYIDYAMSVIVGRALPDVRDGLKPVHVRVLYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                   + Y KCAR+ G+VMG YHPHG++AIYDAL R+AQ W++R  LI+GQGNFGS 
Sbjct: 61  FDSRFLPERSYNKCARVVGDVMGNYHPHGDSAIYDALVRLAQPWAMRYPLIDGQGNFGSQ 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DP AA RYTECRL   A  +L D+ +DTVDFR NYDG  QEP VL +R PN+L+NG  
Sbjct: 121 GNDPAAAMRYTECRLTPLAMRMLADIEEDTVDFRDNYDGRIQEPTVLPSRVPNLLINGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII----RGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV +G V  +DNP+   +  +E +    +GPDFPT   ILG  G
Sbjct: 181 GIAVGMATNIPPHNLREVAEGVVWALDNPEASDEETLEAMIARIKGPDFPTYGQILGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGS+ +R V  +++ +  R  +VV+E+PYQVN   ++E IA LVR+++I  I
Sbjct: 241 IEDAYRTGRGSVKMRAVVEMDEDAKGRTILVVSELPYQVNPDNLVENIASLVRDQKINGI 300

Query: 297 ADLRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ DES+R+ G R+V+ +KR A A V+LN LY++T LQ  F VNM++L    P    L 
Sbjct: 301 SNIADESNRRSGMRIVVTVKRDAVAKVVLNNLYKHTQLQYSFGVNMLSLVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + EV+VRRTK+ L KA +RAHV  GL  A+  LD V+ +IR S   E+AR 
Sbjct: 361 QMIRHYVKHQIEVIVRRTKFRLRKAEERAHVWRGLVKALDQLDAVIALIRRSDTTESARS 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                           + + EVQ+ AILE++L RL  L R  I +
Sbjct: 421 GLME--------------------------LLSVDEVQSNAILEMQLRRLAALERQKIID 454

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           +L  + ++I +  DIL+   R   I++ ELL + D+    RRT+IV    D+  ED I  
Sbjct: 455 QLAEIELQIADLKDILAKPERQRAIVRGELLEIVDKHGDDRRTKIVPFDGDVSMEDLIAV 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED+VVT++  GY KR    +YRAQ+RGGKG  G  ++ +D V   F+ STH  +LFF++ 
Sbjct: 515 EDVVVTITRTGYAKRTKTDLYRAQKRGGKGVQGAQLKQDDIVQHFFVCSTHDWILFFTNK 574

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L+    E I  ++     E      Y+V AT++G
Sbjct: 575 GRVYRTKAYDLPEASRNARGQHVANLLAFQPDEEIAQVIQIKNYE---AAPYLVLATRNG 631

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V+++KLSDF      G I + L   DE++      + +D+LL +K GQ +RF  S   +
Sbjct: 632 LVKKSKLSDFDSNRSGGLIGINLREEDELVGAVLTGEGDDLLLVSKDGQSIRFHSSDDVL 691

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     D+++SM +V      +        +                
Sbjct: 692 RPM-GRATSGVQGMRFNSDDELLSMGVVQEG--LFVLVATDGGYAKRTPIEDYPVQGRGG 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                   +          +   E  +  ++  G   RTS+ + R + R  KG+R  ++ 
Sbjct: 749 KGVLTIQHDRRRGRLVGALIVDVEDELYAITSAGGVIRTSAKEIRKAGRQTKGVRLMNLG 808

Query: 834 KINEIGAL-------VAVFPVNDNDQ 852
           + + + A+         V    ++DQ
Sbjct: 809 EKSTLIAVARNADEPADVSTGEEDDQ 834


>gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri]
          Length = 821

 Score =  759 bits (1959), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/893 (38%), Positives = 531/893 (59%), Gaps = 87/893 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M  + + + K++ 
Sbjct: 12  DGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHK 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R  LI+G GNFGS+DGDPPAA RYTE
Sbjct: 72  KSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  ++ D+ K+T  F  NYDGS +EP  L   +PN+LVNG  GIAVGMATNIP 
Sbjct: 132 AKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+DG +AV  NP+I    LM+II+GPDFPTGA+I    G+  AY TG G+I IR 
Sbjct: 192 HNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALITAGNGLIKAYETGNGAITIRS 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IE+ + ++ +I+V+EIPYQ+NKA +LE+IAELVR+K I  I DLRDES+ +G RVV+
Sbjct: 252 KIDIEE-NNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNMEGVRVVL 310

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A  +VILN+LY+ T LQ+ FS+N++AL   +P    L  ILK F+  + +++++R
Sbjct: 311 ELKRDAQENVILNKLYKLTPLQTNFSLNILALYKNQPRVMGLKQILKYFIEHQIDIIIKR 370

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           +++ L K R+R  +L GL IA+ N+DEV+ II+ S   + A   L+ +            
Sbjct: 371 SQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINK------------ 418

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L   Q RAILE+RL RLTGL  + I NE+  + + I E  +I++
Sbjct: 419 --------------FNLVGEQARAILEMRLQRLTGLEIEKINNEIKDIKVAITELEEIIN 464

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  + + I+  EL  +K +    RR++I++    +++ E+ I RED ++ ++  GYVKRV
Sbjct: 465 NSEKQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRREDTLIMLTQDGYVKRV 524

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               ++ Q RGGKG  G+   ++  +  +   ++  S+L FS+ G VYK + + +   S 
Sbjct: 525 SDDTFKLQNRGGKGIIGLANIEDS-LKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSR 583

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG  +IN++++++ E I TI+   E  S+ +N  + F TK G +++ K+S+F QI ++
Sbjct: 584 HARGLPIINLIAIDKTESIQTIIAVDESISTEDN--LFFVTKKGLIKKTKISEFNQIRQT 641

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GK+A++L   DE++SV      +D+++   +G+ +RF    IR    R SVGV+GI    
Sbjct: 642 GKVAIELKDNDELVSVIITKGYDDVIIGNNIGKVIRFNEKEIRPMT-RQSVGVKGI---- 696

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                                                                  E    
Sbjct: 697 -------------------------------------------------ANDATGETIGV 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 +++L+V+E G+ K+T   D+R++ R+ KG+++ +++  ++ G L  V  V+ ++
Sbjct: 708 SSGRSAKYVLSVTENGYAKKTIIKDYRLTGRNTKGVKSINLT--DKTGYLKFVQTVDGDE 765

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            I++ + KG +IRV + +I +  R T GV I    +D+++  +E +++   ++
Sbjct: 766 DILVGTKKGNIIRVSLEQIPLFGRTTSGVKIMRLEQDDKLEVIEILKKKINIE 818



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 72/170 (42%), Gaps = 7/170 (4%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I +      +      K +      ++   ++    +    ++  ++E   +EL  +E 
Sbjct: 451 DIKVAITELEEIINNSEKQIDIMITELTEIKKKYGDERRSQIIKEELTEIDPEELIRRED 510

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++ +++ G+ KR S   F++ NR GKGI        N   +L  +   N  D +++ S+
Sbjct: 511 TLIMLTQDGYVKRVSDDTFKLQNRGGKGIIGL----ANIEDSLKKIISANSIDSLLIFSN 566

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            G + ++    I   SR  +G+ I +     K E + ++  + ES   ++
Sbjct: 567 FGKVYKLRAYNIETYSRHARGLPIINLIAIDKTESIQTIIAVDESISTED 616


>gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
 gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032]
          Length = 839

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/872 (38%), Positives = 497/872 (56%), Gaps = 55/872 (6%)

Query: 1   MTEHIISSDEEEE-----------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MTE   S+  E E             I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTESPESTPNEPEVPEALAAVVSHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225
           R PN+L+NG  GIAVGMAT IP HNL E+       +++P+      L+AL+EI++GPDF
Sbjct: 181 RIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+G++GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGQSGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++ +V  + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  E AR+ L+                            + + E+Q  AIL+++L R
Sbjct: 421 RRSPTVEDARQGLI--------------------------RLLEIDEIQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+I+   
Sbjct: 455 LAALERQRILDDLAKLELEIADLKDILAKPERQRRIVSEELGEIVAKWGDERRTKIIPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+  P  +    
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQV--- 631

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ +L +F      G IA+ L   DE++        +D+LL +K  Q
Sbjct: 632 APYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGAALVGPTDDLLLVSKNAQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761
            +RF  +   +R   GR + GV G+  +  D++++M +V    D        Y K    +
Sbjct: 692 AIRFNATDEALRPM-GRATSGVIGMRFSDEDELLAMEVVREGLDVLVATNGGYAKRTPIE 750

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
              + G   +       +   G +       +   +  +  ++  G   RT     R + 
Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPDDELFAITSNGGVIRTPVKPVRRTR 807

Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R+  G++  D+     I  +      ++ D+
Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837


>gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC
           BAA-613]
          Length = 848

 Score =  758 bits (1957), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/847 (39%), Positives = 514/847 (60%), Gaps = 39/847 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +
Sbjct: 2   EPNVFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  +L D+ KDTVDF PN+D + +EP+VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL E++   V +IDN      +  L+ +MEI++GPDFPTGA ILGR GI+ AY T
Sbjct: 182 NIPPHNLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATILGRRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR  I +R V++IE  +  + +I+VTE+PY VNKA ++EKIA+LV+EK+I  I  + DES
Sbjct: 242 GRAKIKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+VILNQL ++T LQ  F V M+AL   +P+   L  +L+ ++ 
Sbjct: 302 NREGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLALINNQPKVLNLHQMLEEYLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRT+Y LNKA +RAH+L GL IA+ N+DEV+RIIR + N   A+ +LM+R   
Sbjct: 362 HQEEVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMER--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q++AI+++RL  LTGL R+ + NE   L  +
Sbjct: 419 -----------------------FGLSDAQSQAIVDMRLRALTGLEREKLENEYRELQAK 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I+E   IL+   +LL +I+ E++ + D+    RRT I     DM  ED I  ED ++ ++
Sbjct: 456 IEELKAILADEKKLLTVIRDEIMIISDKYGDDRRTAIG-YDDDMSMEDLIPDEDTIIAMT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           HLGY+KR+ +  +R+Q RGGKG  G+   +ED++ DL + + H  ++FF++ G VY+ K 
Sbjct: 515 HLGYIKRMDVDNFRSQNRGGKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKA 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P     ARG A+IN+L L   E+IT I+P  E     ++ Y+  AT++G V++  + 
Sbjct: 575 YEIPEAGRTARGTAIINLLQLMPEEKITAIIPMREF---NDDKYLFMATRNGMVKKTPMV 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           ++  + ++G  A+ L   DE++ V+      DILL T+ G C+RF  + +RV  GR S+G
Sbjct: 632 EYEHVRKNGLQAIVLRDGDELIEVKATDNSQDILLVTRKGMCIRFNETDVRV-TGRVSMG 690

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V G+     D+VI M +    D+        M   +      + +      +    + + 
Sbjct: 691 VIGMRFEDDDEVIGMQMQSQGDSLLVVSENGMGKRTMITEFSAQNRGGKGVICYKCTDKT 750

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                   +L    + I+ ++ +G   R +  D  +  R+  G++   + + ++I  + +
Sbjct: 751 GYL--VGAKLVNDGREIMIITTEGIIIRMTVDDISVIGRNTSGVKLMSIDQDSDI-KVAS 807

Query: 844 VFPVNDN 850
           +  V ++
Sbjct: 808 IAKVRES 814


>gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis]
          Length = 950

 Score =  758 bits (1956), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/920 (36%), Positives = 503/920 (54%), Gaps = 64/920 (6%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
                   +  I    +  E + SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G
Sbjct: 70  TEEGGTGSDSRIIETELRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELG 129

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           ++ NK + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQD+S+R+ L++G GNFGS+D DP
Sbjct: 130 LQHNKPFRKCARVVGEVLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDP 189

Query: 125 PAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PAA RYTECRLQ  A  + L DL  DTVDF PN+D S  EP VL AR PN+L+NG  GIA
Sbjct: 190 PAAMRYTECRLQAVASAMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIA 249

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-----K 238
           VG+AT IP HN+ EVV+G  A+I NPDI +  LM  I  PDFPTGA+      I     +
Sbjct: 250 VGIATKIPPHNMREVVEGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVR 309

Query: 239 NAYATGRGSIVIRGVSHIEKTS---GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            AY  G+G I++R   HIE  S     +  +V+TE+PYQ NK+A++E+IA LV    +  
Sbjct: 310 QAYEEGKGGILMRAKIHIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTG 369

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           ++D+RDESDR G RVV+E+KRG +AD++LNQL ++T++QS FS NMVAL G  P   TL 
Sbjct: 370 VSDIRDESDRDGVRVVVEVKRGGNADLVLNQLLKHTAVQSRFSANMVALVGATPLTLTLK 429

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L+ F++FR EVV RR ++ L +A+ R H++ G   A+ +LD VV  IR + +   A  
Sbjct: 430 NFLQHFLSFRCEVVERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAA-- 487

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                    +       LS  Q   +L + L RLT L    ++ 
Sbjct: 488 -----------------------LVVLRASPFGLSREQAEGVLGMTLRRLTSLEASKLQE 524

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIV 534
           E   L  +I +  D+L  + R+L ++  E   +  +  TPRRT I+         ED I 
Sbjct: 525 EQAQLQAKIADLQDLLQRQDRILQVVTSEAEELAAKFGTPRRTHIITDGEVELRHEDVIP 584

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               +V  S  GY+KRV    + AQ+RGG G++G  ++++D + ++  V+ H  +LFF++
Sbjct: 585 NAPSLVVYSRRGYIKRVRPDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFTT 644

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN--NLYVVFAT 652
            G  Y  + + +P G+  A G A+  +L  ++  RI  ++P     ++       VV  T
Sbjct: 645 EGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVMLT 704

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G ++R  L  F  INRSG +AM +   D +  V  C+  + +L+    G    F I+ 
Sbjct: 705 RKGQIKRTALKQFTSINRSGLVAMGVREGDSLQFVGLCSPTDSVLIAASNGSAQHFAITK 764

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR +VG + ++L+KG  +++MAI+             +                 
Sbjct: 765 LRRM-GRAAVGNKSMTLSKGTDIVAMAILP----------AGIVAEGPNDEDYLSIEGSH 813

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++       +E    E +    ++L V+++G GKRT   +FR+  R+G GI+A  +
Sbjct: 814 DMDYSEGKAAETPAESSSNEEQSAGPYLLLVTQQGLGKRTCISEFRLRARTGSGIQALRL 873

Query: 833 SKINEIGALVAV-------------FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
              N    L AV                     ++L + +G L+RVPV ++ I SR  KG
Sbjct: 874 ---NLGDRLAAVQDESSATKTSSSGRKPEAGADVVLSTQQGQLVRVPVADVNIHSRFAKG 930

Query: 880 VVIFSTAKDERVVSVERIRE 899
             +    + + VV+   + +
Sbjct: 931 HRLVKVRQGDEVVAATVLSK 950



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 79/227 (34%), Gaps = 22/227 (9%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGISLAKGDQVISMAIVLHAD------ 745
           +++ ++ G   R     +R        R  VG  G  L + D +  +  V   D      
Sbjct: 589 LVVYSRRGYIKR-----VRPDTFGAQKRGGVGKAGARLKEDDSLDEVVYVNDHDHLLFFT 643

Query: 746 --ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                     Y      +  + S  T+ +   K+               L   EQ ++ +
Sbjct: 644 TEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAALGSAEQDVVML 703

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + KG  KRT+   F   NR   G+ A  V +     +L  V   +  D +++ +  G+  
Sbjct: 704 TRKGQIKRTALKQFTSINR--SGLVAMGVREG---DSLQFVGLCSPTDSVLIAASNGSAQ 758

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
              + ++R   RA  G    + +K   +V++  +    + +     +
Sbjct: 759 HFAITKLRRMGRAAVGNKSMTLSKGTDIVAMAILPAGIVAEGPNDED 805


>gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571]
 gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571]
          Length = 825

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 348/853 (40%), Positives = 513/853 (60%), Gaps = 40/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT    +S  E+ K +  VSI +EM++SYL YA++VI+GRAIPD+RDGLKPVHRR L+ M
Sbjct: 1   MTSEE-NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG   +K + K ARI GEVMGKYHPHG+++IYD L +MAQ +S R +L+EGQGNFGS+
Sbjct: 60  GEMGNYHDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL+D+ K+TVDF PN+D S QEP+VL A+ PN+LVNG  
Sbjct: 120 DGDSAAAMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSD 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT +P HN+GEV     A+ID+P+I    LME + GPDFPTG VILGR+GI +A
Sbjct: 180 GIAVGMATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVILGRSGIASA 239

Query: 241 YATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           Y TGRG I +RGV+ IE      + +I+++EIPYQVNKA ++E+IA+LVR+K+I  I+D+
Sbjct: 240 YTTGRGRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDI 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESD+ G RVVIELK+     V+LNQLY++T L+S F V  +A+   +P+  TL  I++
Sbjct: 300 RDESDKDGIRVVIELKKSIVPMVVLNQLYKHTPLESTFGVINLAIVDNQPKVLTLKEIIQ 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ V+ RRT + L KA DR H+L GL +A+ N+D V+  IR S   E A ++L++
Sbjct: 360 EFLKHRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIE 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E+Q  AIL+++L RL  L +  I +E + 
Sbjct: 420 --------------------------NFGLDEIQADAILKMQLRRLAALEQQKIIDERDG 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  E++    I+S    +   IK+E L + ++    RRT+I   + D++ ED I  + ++
Sbjct: 454 LLKEVERLKLIISDEGHIFAEIKKETLEISEKYSDERRTKISHDVSDLDKEDLIENKQVL 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V+++   Y+K +PL  Y+ Q RGG+G  G+  +DEDFV  +F+ STH  +L F+S G VY
Sbjct: 514 VSLTSHNYIKSMPLDTYKGQHRGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVY 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+ +P  + Q+RGKA++N+L L   E++T ++P  E +    + + +FAT +G V +
Sbjct: 574 WLKVYDIPEATRQSRGKAIVNLLELGDEEKVTAVIPVSEFK---EDEFFLFATLNGMVVK 630

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
               +F +  +SG  A+ L   DE++ V       +I+LTT++GQ +RF I +I     R
Sbjct: 631 IPQVEFSRPRQSGIYAITLKDGDELVHVMKAVDSGEIILTTRMGQSLRFGIESI-SLRHR 689

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N++GV+GI L   D++  +  V            Y K          G            
Sbjct: 690 NALGVKGIKLRYMDELQDVTPVEKDHLLTITEKGYGKRTEFDEFRGHGRATMGVRNIQTD 749

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
              G +S +   +    ++ I+ +S  G   RT   +  I  R  +G+R   + +     
Sbjct: 750 VSGGIVSSKAVSD----DEDIILMSRSGIVIRTKVSEISIQKRGTRGVRIMKLDEG---D 802

Query: 840 ALVAVFPVNDNDQ 852
           ++V  F + D+D+
Sbjct: 803 SVVG-FTILDSDE 814


>gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5]
 gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5]
          Length = 839

 Score =  757 bits (1955), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/872 (38%), Positives = 497/872 (56%), Gaps = 55/872 (6%)

Query: 1   MTEHIISSDEE-----------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E           +   I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPETPEPLAAVVQHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L +
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPS 180

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDF 225
           R PN+L+NG  GIAVGMAT IP HNL E+       +++P+      L+AL+EI++GPDF
Sbjct: 181 RIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDF 240

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT  +I+G+ GI++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+IA
Sbjct: 241 PTHGLIVGQAGIQDAYRTGRGSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIA 300

Query: 286 ELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           EL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL
Sbjct: 301 ELIKEGKLAGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLAL 360

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               P    L   ++ +V  + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +I
Sbjct: 361 VDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALI 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R SP  E AR+ L+                            + + EVQ  AIL+++L R
Sbjct: 421 RRSPTVEDARQGLI--------------------------RLLDIDEVQATAILDMQLRR 454

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+IV   
Sbjct: 455 LAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFD 514

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
            ++  ED I RED+VVT++  GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ S
Sbjct: 515 GEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCS 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           TH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+  P  +    
Sbjct: 575 THDWILFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQV--- 631

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             Y+V ATK+G V++ +L +F      G IA+ L   DE++       E+D+LL +K  Q
Sbjct: 632 APYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQ 691

Query: 705 CVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQ 761
            +RF  +   +R   GR + GV G+  +  D+++++ +V    D        Y K    +
Sbjct: 692 AIRFNATDEALRPM-GRATSGVIGMRFSGEDELLAVEVVREGLDVLVATNGGYAKRTPIE 750

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
              + G   +       +   G +       +   E  +  ++  G   RT     R + 
Sbjct: 751 EYPVQGRGGKGVLTAKITERRGGLV---GAVVIDPEDELFAITSNGGVIRTPVKPVRRTR 807

Query: 822 -RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R+  G++  D+     I  +      ++ D+
Sbjct: 808 DRNTMGVKLMDLPDGVTI--VAIARNADEPDE 837


>gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160]
 gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160]
          Length = 822

 Score =  756 bits (1951), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/854 (38%), Positives = 484/854 (56%), Gaps = 45/854 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++      I  V +  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   
Sbjct: 2   TETPARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ YVKCAR+ GEVMG YHPHG++AIYDAL R+AQ WS+R  LI+GQGNFGS   DP AA
Sbjct: 62  DRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   A  +L ++ ++TVDF+PNYDG  QEP+VL  R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TN+P HNL EV D    ++D+P+ + +      ME ++GPDFPT  +I+GR GI+ AY T
Sbjct: 182 TNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIVGREGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGS+ +R V  +E+ +  R Q+VVTE+PYQVN   + E IAE VR+ R+  I+++ DE 
Sbjct: 242 GRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADES 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VI L+R A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V
Sbjct: 302 SDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDGVPRTLRLDELVRYYV 361

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + EV+ RRT+Y L KA +RAH+L GLA A+  LD V+ +IR                 
Sbjct: 362 LHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRS---------------- 405

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                          +   G    + + E+Q  AIL+++L RL  L R  I +EL  L  
Sbjct: 406 ----------SASADAARSGLMDLLDIDEIQATAILDMQLRRLAALERQRILDELAELED 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +   IL S  R   II+ EL  + ++    RRT+ V    D+  ED I  E++VVT+
Sbjct: 456 RIADLQAILDSPERQRQIIRDELAEIVEKYGDDRRTKFVANDGDVSMEDLIAEEEVVVTI 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR    +YR+QRRGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 516 TRTGYAKRTKSDLYRSQRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAK 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + LP  +  ARG  + NIL+    E+I  +M   +        Y+V AT +G V++ +L
Sbjct: 576 AYELPEANRTARGAHVANILAFQPDEKIAQVMQIKDYGV---APYLVLATANGQVKKTRL 632

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           +DF      G IA+ L   DE++       + D+LL T+    +RF      +R   GR 
Sbjct: 633 TDFDSPRSGGVIAINLRESDELVGAALIDPDQDLLLVTRKAMSIRFKADDATLRPM-GRA 691

Query: 721 SVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           + GVRGI+L+  D ++SM +V    D        + K    +     G   +     +  
Sbjct: 692 TEGVRGIALSPDDSLLSMIVVEEGVDVLVATERGFAKRTGIENYPAQGRGGKGVLTADPK 751

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEI 838
           S +GN+       L  +   +  ++  G   RT     R   +R+  G++  ++ +    
Sbjct: 752 SRKGNLVGALSVRLGDE---LYAITSGGGVIRTPVNGVRHNKDRATMGVKLMNLPE---D 805

Query: 839 GALVAVFPVNDNDQ 852
            ++VA+    DND+
Sbjct: 806 VSIVAIARTTDNDE 819



 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 105/276 (38%), Gaps = 15/276 (5%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF----IQINRSGKIAMKLDSRDEILSVETCT 691
                    + +++F T  G V R K  +          +    +     DE ++     
Sbjct: 550 VDHFFVGSTHDWILFFTNKGRVYRAKAYELPEANRTARGAHVANILAFQPDEKIAQVMQI 609

Query: 692 QEN----DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           ++      ++L T  GQ  +  ++    F    S GV  I+L + D+++  A++   D D
Sbjct: 610 KDYGVAPYLVLATANGQVKKTRLTD---FDSPRSGGVIAINLRESDELVGAALI-DPDQD 665

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                     +  +    +       +                  +  +   +L  +E+G
Sbjct: 666 LLLVTRKAMSIRFKADDATLRPMGRATEGVRGIALSPDDSLLSMIVVEEGVDVLVATERG 725

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           F KRT   ++    R GKG+   D    +  G LV    V   D++  ++  G +IR PV
Sbjct: 726 FAKRTGIENYPAQGRGGKGVLTAD--PKSRKGNLVGALSVRLGDELYAITSGGGVIRTPV 783

Query: 868 NEIR-IASRATKGVVIFSTAKDERVVSVERIRESEI 902
           N +R    RAT GV + +  +D  +V++ R  +++ 
Sbjct: 784 NGVRHNKDRATMGVKLMNLPEDVSIVAIARTTDNDE 819


>gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
 gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066]
          Length = 983

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/919 (36%), Positives = 528/919 (57%), Gaps = 39/919 (4%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + I ++ +     + +V + DE++ S++ YA++VI+ RA+PD+RDGLKPVHRR+L+ M  
Sbjct: 41  DGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMYD 100

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  N +  K AR+ G+V+G++HPHG+AA+Y+ + RMAQ +S+R  LI GQGNFG++DG
Sbjct: 101 LKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNIDG 160

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+ K A  +L D+ K+TVD  PNYDG+ Q P VL  R+PN+LVNG  GI
Sbjct: 161 DGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSGI 220

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEV+DG VA++DNPD+ LD LM  I GPDFPTG  I+G  GI+ AY 
Sbjct: 221 AVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIVGNAGIREAYR 280

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG  ++R  +HIE+    R+ I V EIPY VNK+A++++IAELVR+K+I  I+++ D 
Sbjct: 281 TGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVNDL 340

Query: 303 SDRQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           SD+    R+ I+LKR A  + +LN L+  TSLQS F +NM+AL    P +  L  IL  F
Sbjct: 341 SDKDNQVRIAIDLKRDAYEEAVLNNLFERTSLQSSFPINMIALVHNHPRQLPLKEILSEF 400

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR EVV RRT YLL + R +A +  GL +A AN++++V +I  S N + ARR LM+  
Sbjct: 401 INFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLMEEP 460

Query: 422 WNASDIKDLIDLIDD----------SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
           W+ + I  LI+  ++                 D   YLSE Q RAIL L+L RLT L  D
Sbjct: 461 WDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHLAGD 520

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
           +I+ +  +L   IK  L+IL++  R+  +I+ EL+ VK+     RR+   E    +   D
Sbjct: 521 EIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFADKRRSDFTEDYGKLSKAD 580

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +D++VT+S  GY+K   +S Y AQ+RGGKGR    ++D+DF++ + + +TH +++ 
Sbjct: 581 FIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISRMAVTNTHDTLMC 640

Query: 592 FSSLGFVYKEKVWRLPIG-SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F+  G V+  KV+ LP   +   RG+ + NI  + +GE+IT ++P  E +    N +++ 
Sbjct: 641 FTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFD---ENHFIIM 697

Query: 651 ATKHGNVRRNKLSDFIQINRSGK----IAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           AT  G +++ KLS F    +        A+ L   D ++  E  + ++D+ + +  GQC+
Sbjct: 698 ATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREGDSLMGAEISSGDDDVFVFSSDGQCI 757

Query: 707 RFPI----SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           R         +              +    D      +  + D   +  +  +   + Q 
Sbjct: 758 RICEFYNKKDV------------ADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQG 805

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-N 821
              SG       +      +  +S       +   + ++ V+  G+GKR    D  +  N
Sbjct: 806 IRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEAVM-VTANGYGKRILLTDIPLRMN 864

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R   G++       N  G LV V   + N   ++++D G + R PV+ + +  R   GV+
Sbjct: 865 RGSSGVKTMSHMDRN--GKLVGVVRSDINSDYLVITDLGHMTRTPVSNLPLPGRTAGGVI 922

Query: 882 IFSTAKDERVVSVERIRES 900
           +    + E +++++ I E+
Sbjct: 923 VMRPYEGESIIALQSIPEN 941



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 76/272 (27%), Gaps = 52/272 (19%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           ++   +    ++ I+  ++ G      IS       R   G +   L   D +  MA+  
Sbjct: 575 KLSKADFIAPQDVIVTLSQEGYIKYQDISTYEAQQ-RGGKGRQAAKLKDDDFISRMAVTN 633

Query: 743 HADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             D         R+   K                            I+         +  
Sbjct: 634 THDTLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSEFDENH 693

Query: 799 FILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           FI+  +  G+ K+     F+  +   + + I+A  + +     +L+     + +D + + 
Sbjct: 694 FIIMATVMGYIKKVKLSAFKSFMQRVNDQAIKAITLREG---DSLMGAEISSGDDDVFVF 750

Query: 857 SDKGTLIRV----------------------PVNE--------------------IRIAS 874
           S  G  IR+                       V E                    IR + 
Sbjct: 751 SSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQSSEGEVKVVDRHAGQGIRPSG 810

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           R +  + I      +  VS+  +   E   EA
Sbjct: 811 RGSGALRIIKLRPGQTAVSLILLSVDETDPEA 842



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 19/254 (7%)

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +D V   S  G   R+     +                E    +             SS 
Sbjct: 744 DDDVFVFSSDGQCIRICEFYNKKDVADNDESDDDGAEPEVEENEDQ-----------SSE 792

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V            P  RG   + I+ L  G+   +++    DE+       V  T +G
Sbjct: 793 GEVKVVDRHAGQGIRPSGRGSGALRIIKLRPGQTAVSLILLSVDETDPEA---VMVTANG 849

Query: 656 NVRRNKLSDFIQINRSGKIAMK----LDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
             +R  L+D       G   +K    +D   +++ V      +D L+ T LG   R P+S
Sbjct: 850 YGKRILLTDIPLRMNRGSSGVKTMSHMDRNGKLVGVVRSDINSDYLVITDLGHMTRTPVS 909

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR + GV  +   +G+ +I++  +       +E     +++     L   +   
Sbjct: 910 NL-PLPGRTAGGVIVMRPYEGESIIALQSIPENVVASNEHTRNARNLDKNDELEIIEKLN 968

Query: 772 ITSLKNDSSVEGNI 785
               K+        
Sbjct: 969 GGKDKDAEETSKED 982


>gi|223998190|ref|XP_002288768.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
 gi|220975876|gb|EED94204.1| DNA topoisomerase IV, ATP/GTP binding site [Thalassiosira
           pseudonana CCMP1335]
          Length = 820

 Score =  755 bits (1950), Expect = 0.0,   Method: Composition-based stats.
 Identities = 328/895 (36%), Positives = 501/895 (55%), Gaps = 97/895 (10%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA+++ILGRA+PD RDG+KPVHRRIL+ M  +G+  +  Y KCAR+ GEV+GKYHPHG
Sbjct: 1   MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGK 148
           + A+YDAL R+AQ +S  + LI+G GNFGS+D DP AA RYTECRL + A   LLDD+  
Sbjct: 61  DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPAAAMRYTECRLTRIAAETLLDDILM 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTV+F PN+DGS  EP VL A+ P +L+NGG GIAVGMATN+P HNLGE++D CVA+   
Sbjct: 121 DTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTKG 180

Query: 209 P-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----- 258
                 ++    L++II  PDFPTGA I+G++G ++ Y TG G +V+R V H+E+     
Sbjct: 181 RNEGGEEVTDGKLLQIIPAPDFPTGACIIGKSGSRSLYTTGNGGVVMRAVMHLEEVPTSS 240

Query: 259 --TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                 R  I+VTE+PYQVNKAA+LE+IA LV EK++  IADLRDESDR G R+VIELKR
Sbjct: 241 GKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDGIRMVIELKR 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            A A V+ N L + TSLQ+ FS N +AL   G  P+RFTL   L  F+ FR + +  +  
Sbjct: 301 DAVAAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIRNKCA 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+K  +RAH++ GL IA+ + DEV+ I+R +P+  +AR  LM                
Sbjct: 361 FQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNP----------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + LS  Q  A+L+L+L +LT L  D + +E  +L        ++L++ 
Sbjct: 410 -----------KLGLSSAQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTND 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +   + +E +++K    TPR+T+I+    D  D D +  E  V+ V+  GY+KR+PL 
Sbjct: 459 AAVRDTMLEEFMAMKKRFGTPRKTKILPDEEDKADIDLVQNERSVIVVTRGGYIKRMPLK 518

Query: 555 VYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            + +Q RG  GK  +   + D++ V   F  + H +VL  +  G  Y  + +++P G   
Sbjct: 519 TFESQNRGTRGKRGTSNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRT 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG  + ++L +   + IT+++P  E      N ++V AT++G +++  L+ F ++ + G
Sbjct: 579 ARGAPIPSVLPVKSDDVITSVLPVSEFS---KNEFIVLATEYGWIKKTPLAAFEKLTQRG 635

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I   L   D +   E CT  +DIL+ +  GQ  RF  + +R    R S GV+ ++L KG
Sbjct: 636 LIIATLADGDRLNWCEKCTDNDDILVGSTRGQATRFKAADLRP-TARTSRGVKSMTLKKG 694

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D +  M ++   D                                               
Sbjct: 695 DTIADMNVLRKED----------------------------------------------- 707

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                +F+L V+ +G+GKR  + +FR + R G G+ A           +  +  VN++D+
Sbjct: 708 -----KFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDE 762

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIRESEIVDE 905
           I+L++ +G ++R  V++I    RA  GV++        + + +V  + + +   +
Sbjct: 763 ILLITSQGVIVRQKVSDISCQGRAATGVLVQKVDVRSGDSISTVSIVPKEDADGD 817


>gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
 gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95]
          Length = 813

 Score =  755 bits (1949), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/897 (38%), Positives = 508/897 (56%), Gaps = 91/897 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I     T+E++ SYL Y+++VI+ RAIPD+RDGLKPV RRIL+ M ++G++ N  + 
Sbjct: 2   DDKIFIKDFTEELKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEVMGKYHPHG+AAIYDAL RM Q +++R  L+E QGNFGS+DGDPPAA RYTE
Sbjct: 62  KNARIVGEVMGKYHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ +   ++L D+ K+TVDFR N+DGS  EPVVL    PN+L+NG  GIAVGM TNIP 
Sbjct: 122 ARMPELGEYMLKDIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E+V     +I+ P+ ++  L++ I+GPDFPTG  ++   G+K  Y TGRG I IRG
Sbjct: 182 HNLNELVAALKLLIEKPESEVADLLKHIKGPDFPTGGQVVDGEGLKELYETGRGKITIRG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGY 308
              IE        IV  EIPY V+KA ++E+I   V     +K+ V I D+RDESD++G 
Sbjct: 242 KYRIEDEGKG-TSIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGI 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL++ A+   ++N L+++T+LQS F V M  ++  KP    L G+L++F+  R  V
Sbjct: 301 RLVIELRKNANVKKLINDLFKHTNLQSYFYVQMNVIDNEKPSLMNLKGLLQSFLDHRVNV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRTKY L KAR RAH++ GL  AV  +D VV IIR S NP+ A + L +         
Sbjct: 361 ITRRTKYELEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQE--------- 411

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T+ +SE Q +AI ++RL  L+ L   ++  EL +L  +I+  +
Sbjct: 412 -----------------TIGVSEEQAKAIADMRLISLSKLESTNLSEELKNLYKDIENAM 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-DCIVREDMVVTVSHLGY 547
           DIL  + RLLG+IK+EL  V ++    RRT I+    D+ +E + I  ED+V+ ++  GY
Sbjct: 455 DILQKKERLLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVIVLTKWGY 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +P S Y+ Q RGGKG  G+ + DED V ++   +  + ++ FSS G  Y+   + + 
Sbjct: 515 LKAIPSSEYKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSKLMLFSSAGKAYQINAYEIE 574

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                 +GK + N +SL++GE I +I+    D     +  ++  TK G V+R  L +F  
Sbjct: 575 TTLKNTKGKHIANFISLDEGEEIKSIVAISLDGDYDKD--ILIFTKQGKVKRTSLREFSS 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              SG  A+ L  +D ++ V      + D+L+ TKLG  + F  S +R   GR ++GV  
Sbjct: 633 ARASGIRAINLVDKDVVVDVVLLDGSDRDLLIVTKLGMSLMFNSSQVRTM-GRTAMGVNS 691

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I L +GD+VI++  V                                             
Sbjct: 692 IKLREGDEVINVVKVDEGKK---------------------------------------- 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L ++E+G+GKR S + ++  NR G G++   V  I+ IG +VA   
Sbjct: 712 -------------LLLITERGYGKRVSFHSYKPQNRGGIGVKT--VRDISRIGPIVATMS 756

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           V D   I++ + KG  IRV VN I +  R T+GV+I    +D+ VV    ++ ++  
Sbjct: 757 VEDGRDILIFTKKGKAIRVNVNNINVLGRITQGVIIVRLDEDDSVVGAIEVQANDEE 813



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
              +   D      + +   +  +     +    +    +          E+   E  ++
Sbjct: 448 KDIENAMDILQKKERLLGVIKEELDEVANKFGDKRRTEILYNKGDLAEEVEMIQDEDVVI 507

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            +++ G+ K   S ++++  R GKG++   +S  +++  ++    ++    ++L S  G 
Sbjct: 508 VLTKWGYLKAIPSSEYKVQGRGGKGVKGLKISDEDDVKEVIYTNKLSK---LMLFSSAGK 564

Query: 862 LIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVD 904
             ++   EI    + TKG  I    S  + E + S+  I      D
Sbjct: 565 AYQINAYEIETTLKNTKGKHIANFISLDEGEEIKSIVAISLDGDYD 610


>gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 697

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 351/694 (50%), Positives = 478/694 (68%), Gaps = 11/694 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP H
Sbjct: 126 RMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A I+N +I +D LM+ I GPDFPT A+I GR GI +AY TGRG I +R  
Sbjct: 186 NLGEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALISGRKGIVDAYKTGRGKIYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+VTEIPYQVNKA ++EKIAELV++K++  I+ LRDESD+ G R+VIE
Sbjct: 246 ADIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVALN  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQPQLFNLKDMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +             DG  +L+E Q +AIL+LRL +LTGL  + I  E  +L  EI 
Sbjct: 426 AGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E + IL+S  RL+ +I++EL +V+D     RRT I     D++ E+ I RED+VVT+SH 
Sbjct: 486 ELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDIDMEELIAREDVVVTLSHG 545

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK   LS Y +QRRGGKG+S   M+DED +  L + +TH ++L FS+ G  Y+ KV++
Sbjct: 546 GYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKTYRLKVYQ 605

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP+ S  ARGK ++NIL L +GERIT I+   E      + ++  AT  G V++  L+ F
Sbjct: 606 LPLASRTARGKPIVNILPLEEGERITAILRVDEFS---EDKFIFMATGDGTVKKTPLNQF 662

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +  +G IA+ L   D ++ V+    EN+I+L 
Sbjct: 663 ANVRSNGLIAVNLREDDSLIGVDITNGENEIMLF 696



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 72/177 (40%), Gaps = 7/177 (3%)

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + ++++     +L   A+    +   + +    R       +       + +     +  
Sbjct: 469 EHEKILGEYKTLLEEIAELMHILASTERLMEVIREELEAVRDGFGDARRTEITAASHDID 528

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +EL  +E  ++T+S  G+ K     D+    R GKG  AT +   + I  L      N 
Sbjct: 529 MEELIAREDVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERL---LVANT 585

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           +D I+  S +G   R+ V ++ +ASR  +G   V I    + ER+ ++ R+ E    
Sbjct: 586 HDNILCFSTRGKTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILRVDEFSED 642



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 61/213 (28%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   LSD+    R   GK A K+   D I  +      ++IL  +  G+ 
Sbjct: 539 VVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRGKT 598

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            R  +  +   A R + G   V  + L +G+++ ++  V                     
Sbjct: 599 YRLKVYQL-PLASRTARGKPIVNILPLEEGERITAILRVDE------------------- 638

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                            +++FI   +  G  K+T    F  +N 
Sbjct: 639 -------------------------------FSEDKFIFMATGDGTVKKTPLNQF--ANV 665

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              G+ A ++ +     +L+ V   N  ++I+L
Sbjct: 666 RSNGLIAVNLRE---DDSLIGVDITNGENEIML 695


>gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
 gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA]
          Length = 845

 Score =  754 bits (1947), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/898 (36%), Positives = 530/898 (59%), Gaps = 71/898 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K ++S+SI +E++ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G ++N  Y 
Sbjct: 5   SKEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ ++YDA+ R+AQ +S+R  LI+GQGNFGS+DGD  AA RYTE
Sbjct: 65  KSARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K A  +L+DL K+TVDF PNYDG+ + P V+  + PN+L+NG  GIAVGM TNIP 
Sbjct: 125 IRMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIR 251
           HN+ EV+D C+A I++ DI  + L++ IRGPDFPT A+I  +   I +AY TG+G+I +R
Sbjct: 185 HNIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQVR 244

Query: 252 GVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            ++ IE     +R  I++ EIPYQ+NK  ++EKI ELV+E++I  I ++RDESD+ G RV
Sbjct: 245 ALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMRV 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELKR + A+ +LN LY  T LQ+  ++NM+AL   KP    L  I+ +F+ +R+E+V+
Sbjct: 305 VIELKRESEANFVLNSLYALTRLQTSININMIALLKGKPTLLNLKKIISSFIDYRKEIVI 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT + LN+A+ R   L  + I++ N+D ++ +I+ +  P+ AR  L    W   +    
Sbjct: 365 KRTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETLIE 424

Query: 431 IDLIDDSSYTIG----------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
           +D                           +E Q + IL+L+L +LT L ++ +  E  SL
Sbjct: 425 LDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYISL 484

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI   + IL + +RL+ IIK EL+ +K++    RRT+I+E       ED I ++ ++V
Sbjct: 485 TKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKRRTKIIEDNSKFNQEDLIKKKKVIV 544

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S+ GY+K   +S Y  Q+RGGKG+S   ++++DFV  + +  TH ++L  S+ G ++ 
Sbjct: 545 ILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENILCVSNFGRIFS 604

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP  S  + GK ++N LSL  GE+IT+I      +      Y++ AT  G +++ 
Sbjct: 605 IKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFSLKNFK---KGNYILIATLMGLIKKI 661

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +    +  +SG I + L+ RDE++++++  + ++I+L T   + +RF  +++R   GR 
Sbjct: 662 SMDFLTKARKSGIIIINLNKRDEVIAMDSVKKRSEIILFTSSAKAIRFSENSVR-LTGRK 720

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           S+GV G+ + K ++++SM IV                                       
Sbjct: 721 SMGVMGVKIQKDEKLVSMIIVEKDKD---------------------------------- 746

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ILT++E G+G RT   ++   +R  +G+      + N  G 
Sbjct: 747 -------------------ILTITENGYGNRTKESEYLKKSRFIRGVSVIKNDERN--GK 785

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +V    V   DQ+++ ++ G LIR+ V +I +  R TKG+++     D+ V  + R+ 
Sbjct: 786 IVGAIQVERKDQVVIFTNYGILIRILVKDISVFKRNTKGIILIRKINDQVVSGIYRVS 843



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 69/533 (12%), Positives = 170/533 (31%), Gaps = 24/533 (4%)

Query: 385 HVLVGLAIAVANLDEVVR---IIRFSPNPETARRELMQRSWNAS-DIKDLIDLIDDSSYT 440
                +  A       ++   +     + +  R  ++ R      +   LI+ I +    
Sbjct: 225 EKKEQIVHAYRTGKGTIQVRALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKE 284

Query: 441 IGSDGTMYL---SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD--ILSSRS 495
              DG   +   S+     ++             +    L  L   I   +   +    +
Sbjct: 285 RKIDGIHEVRDESDKDGMRVVIELKRESEANFVLNSLYALTRLQTSININMIALLKGKPT 344

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L             +    +RT      L+   +  +  E M++++ ++ ++  +    
Sbjct: 345 LLNLKKIISSFIDYRKEIVIKRTIFE---LNQAKKRVLSLEAMIISLKNIDFIISLIKGA 401

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDL--FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
               +      +    + E+ + +L  F          F +    +++  +R      Q 
Sbjct: 402 -STPKEARLRLTSFCWKLEETLIELDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQT 460

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
                +  L+  + E++         E +     +  + +   + +N+L       R  +
Sbjct: 461 ILDLKLQKLTNLEKEKVFEEYISLTKEITSLVQILQNSNRLMEIIKNELIYIKNQYRDKR 520

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
               ++   +    +   ++  I++ +  G  ++F   +      R   G     L + D
Sbjct: 521 RTKIIEDNSKFNQEDLIKKKKVIVILSNQGY-IKFQSISDYDIQKRGGKGKSSTRLKEKD 579

Query: 734 QVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            V S+ +    +      +    +   +            +             I+    
Sbjct: 580 FVKSVLVTDTHENILCVSNFGRIFSIKVYQLPESSRFSLGKPIVNFLSLKDGEKITSIFS 639

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            +   K  +IL  +  G  K+ S  DF    R   GI   ++   N+   ++A+  V   
Sbjct: 640 LKNFKKGNYILIATLMGLIKKISM-DFLTKAR-KSGIIIINL---NKRDEVIAMDSVKKR 694

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +IIL +     IR   N +R+  R + GV+     KDE++VS+  + + + +
Sbjct: 695 SEIILFTSSAKAIRFSENSVRLTGRKSMGVMGVKIQKDEKLVSMIIVEKDKDI 747


>gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
 gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z]
          Length = 824

 Score =  754 bits (1946), Expect = 0.0,   Method: Composition-based stats.
 Identities = 339/850 (39%), Positives = 490/850 (57%), Gaps = 40/850 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMG 64
           ++S+E       S++I DEM+N ++ YA++VI+GRAIPD+RDGLKPVHRRIL+ M    G
Sbjct: 1   MTSEENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEG 60

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
              +K Y K A+     MG YHPHG++AIYD L +MAQ +S R  L++GQGNFGS+DGD 
Sbjct: 61  NTSDKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDS 120

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE RL KAA  LL+D+ K+TVDF PN+D S QEP VL +R PN+LVNG  GIAV
Sbjct: 121 AAAMRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNLGEV D   A IDNP++ L+ +M+I+  PDFPTG  I+G  GI NAY TG
Sbjct: 181 GMATNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGTDGIVNAYQTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G +V+RG++ IE+     EQIV+TEIPYQVNKAAM+EKIA+LV+ K I  I+D+RDESD
Sbjct: 241 QGKVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G RV+IELK+   A+V+LN LY++T L+S F +  +A+   KP+  +L  +L+ F+A 
Sbjct: 301 KDGIRVIIELKQNTQANVVLNLLYKHTQLESSFGIINLAIVDKKPKILSLAELLRHFIAH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +VV RR+ + L KA +R H+L GL  A+  +D V+  IR SP    A+  L+ +    
Sbjct: 361 RVDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSK---- 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 +  SE Q  AIL+++L RL  L +  I +E  SL + I
Sbjct: 417 ----------------------LGFSEAQAEAILKMQLRRLAALEQQKILDETTSLQLVI 454

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVS 543
            +   ILSS   +L ++K E   ++      RRT+I      D    D I  E  +V ++
Sbjct: 455 DKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMDLIPDEQTLVMLT 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
              Y+KRVPL +YR Q+RGG+G  G+  +DED V  +F+ +TH  +L F++ G VY  +V
Sbjct: 515 TQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRV 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + +P GS  ++GKA++N+L+L   E ++ ++P  + ++  N   +++ATK G V +    
Sbjct: 575 YEIPEGSRTSKGKAIVNLLNLT-DEEVSAVIPMRDFDAEKN---LLYATKKGRVGKFSQD 630

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F +    G I + L   DE++ V       D++LTT  GQ +RF    +R   GR + G
Sbjct: 631 LFSRPRTGGIIGITLLDGDELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRA-TGRGTQG 689

Query: 724 VRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           V GI L  +GD V ++ +V            + K    +     G     T         
Sbjct: 690 VIGIRLKFEGDYVCALTLVETQYLLMITDKGFGKRTEFEEFRGHG---RGTQGVKSIVAN 746

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +         +  ++  +  G   RTS+ D  I  R  KG+R   V   +    + 
Sbjct: 747 FERGKVVSSLAVSDDDQVIITTAGGVVLRTSASDISIQGRGTKGVRVIRV---DSGDKVT 803

Query: 843 AVFPVNDNDQ 852
           +V  V  ++ 
Sbjct: 804 SVAIVPPDED 813



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+  S+ +V   D            +S  +   S         +         ++    +
Sbjct: 445 DETTSLQLV--IDKLTWILSSEENILSVVKTETSEIRTAYADERRTQIDYTANTDFNVMD 502

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   EQ ++ ++ + + KR     +R   R G+G+        + +  +   F  N +D 
Sbjct: 503 LIPDEQTLVMLTTQNYIKRVPLDLYRQQKRGGRGVIGMTTKDEDSVDKV---FLANTHDY 559

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           ++  ++KG +  + V EI   SR +KG   V + +   DE V +V  +R+ +  
Sbjct: 560 LLCFTNKGRVYWLRVYEIPEGSRTSKGKAIVNLLNLT-DEEVSAVIPMRDFDAE 612


>gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
 gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271]
          Length = 838

 Score =  753 bits (1944), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/911 (36%), Positives = 521/911 (57%), Gaps = 75/911 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E      +        V++++EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MSESF----DHTPHNYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MGV  +K Y K ARI G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSV
Sbjct: 57  NEMGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDTVDF+ NY    +EPV L +R+PNVLVNG  
Sbjct: 117 DGDGAAAMRYTEARMSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAA 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGE +D    ++ NPD+ ++ LME + GPDFPTG +++G++GI+ A
Sbjct: 177 GIAVGMATNIPPHNLGETIDALSLLMKNPDVSVNELMEALPGPDFPTGGIVMGKSGIRKA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I++R    IE+ + D+E+IVVTEIPY VNKA ++E+IAEL REK+I  I  + 
Sbjct: 237 YQTGKGKIIVRSRVEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVA 296

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R+G R+V+E++R  SA+V+LN LY+YT+LQ  F  NM+A++   P+  +L  IL  
Sbjct: 297 DESGREGMRIVVEVRRDTSANVVLNNLYKYTALQVTFGFNMLAIDKGVPKIMSLKEILTK 356

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++ ++ EV+ RRT++   KA DRAH+L GL  A+  +DE++ IIR S + E A+ +L++R
Sbjct: 357 YLEYQIEVIRRRTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIER 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S +Q +AIL++RLARLTGL R+ I  E N L
Sbjct: 417 --------------------------FEFSPIQAQAILDMRLARLTGLEREKIEAEYNDL 450

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+   +ILSS + ++ II+ EL  +K+     RRT +  G L   +++ ++ E+ V+
Sbjct: 451 MELIRRLTEILSSEANIMAIIEDELADIKNRFPGERRTELRVGELTSIEDEDLIEEEDVL 510

Query: 541 T-VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             ++  GY+KR+    ++ Q RGG+G  G+ M D D +  L   STH S+LFF++ G VY
Sbjct: 511 IALTSNGYIKRMTQDEFQVQNRGGRGVKGMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVY 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P     A+G  ++N+L++ + E +  I+       S  + Y+ F TK+G V+R
Sbjct: 571 QSKGYDIPEYGRTAKGIPVVNLLNIEKEEYVKEIIVL---HPSDEDQYLFFVTKNGIVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           + +S +  I  +G IA+ +   DE+++V     + +I++ +  G  + F  +  R+  GR
Sbjct: 628 SDVSAYANIRNNGLIALNMREDDELINVLVTNGQQNIIIGSHNGYAMTFAETDARIM-GR 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRG+ L +GD V+  A++                 +                   S
Sbjct: 687 TATGVRGMKLREGDYVVGAAVLNPESNVLVVTERGYGKQTPA--SEYAVKNRGGKGIKTS 744

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           ++     +         ++ ++ ++++G   R +     +++R+  G++   +    +  
Sbjct: 745 NISAKSGQLAGIVSTEGDEDLMVMTDQGVVIRFNIASISVTSRATLGVKMIRLDDGAK-- 802

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                                      V+ I           I  T ++ + ++   +  
Sbjct: 803 ---------------------------VSSI---------TKIMKTGEETQELAETEVDT 826

Query: 900 SEIVDEAESTE 910
            E  D+++S E
Sbjct: 827 EEAKDDSDSEE 837



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 89/240 (37%), Gaps = 17/240 (7%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  +  V+  G VKR  +S Y   R  G     +  R++D + ++ + +   +++  S 
Sbjct: 612 EDQYLFFVTKNGIVKRSDVSAYANIRNNGLIALNM--REDDELINVLVTNGQQNIIIGSH 669

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G+          I    A G   + +   +       + P            V+  T+ 
Sbjct: 670 NGYAMTFAETDARIMGRTATGVRGMKLREGDYVVGAAVLNPESN---------VLVVTER 720

Query: 655 GNVRRNKLSDFIQINR----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           G  ++   S++   NR         +   S  ++  + +   + D+++ T  G  +RF I
Sbjct: 721 GYGKQTPASEYAVKNRGGKGIKTSNISAKSG-QLAGIVSTEGDEDLMVMTDQGVVIRFNI 779

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           ++I     R ++GV+ I L  G +V S+  ++    +  E           +     + E
Sbjct: 780 ASI-SVTSRATLGVKMIRLDDGAKVSSITKIMKTGEETQELAETEVDTEEAKDDSDSEEE 838


>gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
 gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149]
          Length = 840

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/873 (38%), Positives = 493/873 (56%), Gaps = 56/873 (6%)

Query: 1   MTEHIISSDEEEE------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48
           MT+   S+  E E              I  V +  EMQ SYL YA++VI+GRA+PD+RDG
Sbjct: 1   MTDTPESTPSEPEVPETPAAAVVAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDG 60

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR 
Sbjct: 61  LKPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRY 120

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            L++G GNFGS   DP AA RYTEC+L   A  +L D+ +DTVD + NYDG  +EP +L 
Sbjct: 121 PLVDGNGNFGSPGNDPAAAMRYTECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILP 180

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPD 224
           +R PN+L+NG  GIAVGMAT IP HNL E+       ++NPD      LDAL+EI++GPD
Sbjct: 181 SRIPNLLINGSEGIAVGMATKIPPHNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPD 240

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPT  +I+G   I++AY TGRGSI +R V  +E+    R  +VV+E+PYQVN   + E+I
Sbjct: 241 FPTHGLIVGTQAIQDAYRTGRGSIRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERI 300

Query: 285 AELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           AEL++E ++  IAD+RDES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+A
Sbjct: 301 AELIKEGKLGGIADIRDESSGRTGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLA 360

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           L    P    L   ++ +V  + EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +
Sbjct: 361 LVDGVPRTLNLAQFIRYYVEHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIAL 420

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR SP  E AR+ L+                            + + E+Q  AIL+++L 
Sbjct: 421 IRRSPTVEDARQGLI--------------------------RLLEIDEIQATAILDMQLR 454

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
           RL  L R  I ++L  L +EI +  DIL+   R   I+ +EL  +  +    RRT+IV  
Sbjct: 455 RLAALERQRILDDLAKLEVEIADLKDILAKPERQRRIVSEELGEIVAKWGDERRTKIVPF 514

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
             ++  ED I RED+VVT++  GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ 
Sbjct: 515 DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVC 574

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           STH  +LFF++ G VY+ K + LP  S  A+G+ + N+L+    E+I  I+  P  +   
Sbjct: 575 STHDWMLFFTNKGRVYRAKAYELPEASRVAKGQHVANLLAFQADEQIAQIIEIPNYQV-- 632

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
              Y+V ATK+G V++ +L +F      G IA+ L   DE++        +D+LL +K  
Sbjct: 633 -APYLVLATKNGLVKKTRLEEFDSNRSGGVIAINLRDEDELVGAALVAPSDDLLLVSKNA 691

Query: 704 QCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSA 760
           Q +RF  +   +R   GR + GV G+  +  D +++M +V    D        Y K    
Sbjct: 692 QAIRFNATDEALRPM-GRATSGVIGMRFSDEDVLLAMEVVREGLDVLVATNGGYAKRTPI 750

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +   + G   +       +   G +       +   +  +  ++  G   RT     R +
Sbjct: 751 EEYPVQGRGGKGVLTAKITERRGGLV---GAVVIHPDDELFAITSNGGVIRTPVKPVRRT 807

Query: 821 N-RSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             R+  G++  D+     I  +      ++ D+
Sbjct: 808 RDRNTMGVKLMDLPDGVTI--VAIARNADEPDE 838


>gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
 gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c]
          Length = 838

 Score =  753 bits (1943), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/850 (39%), Positives = 486/850 (57%), Gaps = 40/850 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT       E+    +  V+I DEM++SY+ YA++VI+GRAIPD+RDGLKPVHRR L+ M
Sbjct: 1   MTSE--PVVEKIIPKVIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   +K Y K AR     MGKYHPHG+A+IYD L +MAQ +S R+ L++GQGNFGS+
Sbjct: 59  WEEGNTSDKAYKKSARAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LL DL K TVDF PN+D S +EP VL ++ PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV       I NPD  ++ LM+++ GPDFPTG +I G  GI +A
Sbjct: 179 GIAVGMATNMPPHNLREVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGTEGIVSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG G + +RGV+ IE       +I+++EIPYQVNKA M+E IA LV+EK+I  I+DLR
Sbjct: 239 YHTGYGKLTVRGVAEIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV++LK+G    V+LNQLY++T L+S F +  +A++  +P+   L  I+  
Sbjct: 299 DESDRDGLRVVVDLKKGVIPTVVLNQLYKHTPLESTFGIINLAISDNQPKVLGLKAIISE 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R  VV RR ++ L KA+DR H+L+GL +A+  +DEV+  IR S + E A++ L+  
Sbjct: 359 FLHHRATVVRRRCEFDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIA- 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    T  L+E QT AIL+++L RL  L +  IR+E +SL
Sbjct: 418 -------------------------TFGLTEPQTVAILQMQLRRLAALEQAKIRDERDSL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I E   ILS  + +   I++E++ V +     RRT I      +E ED I  + +++
Sbjct: 453 AHVIAELERILSCEANIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKPVLI 512

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +++   Y+KR+PL  YR QRRGG+G  G+  +DED V D+F+ S H  +L F++ G VY 
Sbjct: 513 SITTQNYIKRLPLETYRMQRRGGRGVIGMATKDEDSVEDIFVASMHDYLLCFTTDGRVYW 572

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P  S  ++GKA++N+L L     IT ++P         + Y++F+T+ G V + 
Sbjct: 573 LKVYNIPEASRTSKGKAIVNLLELQDEL-ITAVIPIRTFRH---DRYLLFSTEQGQVVKV 628

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
               F +   +G  A+ L   D ++ V+      +++L+T+ GQ +RF    +R   GRN
Sbjct: 629 PQDQFSRPRSTGINAISLRENDSLVDVKLTDGTKELILSTRKGQSLRFHEQTVRTV-GRN 687

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI L  GD V +  +V          + Y K          G           + 
Sbjct: 688 ASGVRGIKLKYGDLVQAATVVEKDHLLTITELGYGKRTEFDEFRGHGRGTMGVRNILTAP 747

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
             G ++ +        +  I+ +S  G   R    D  +  RS +G+R   + +      
Sbjct: 748 QNGVVATKAVS----SDDEIVVMSALGNVIRMKVSDISVQKRSARGVRIIRLDE---DDR 800

Query: 841 LVAVFPVNDN 850
           +V +  +   
Sbjct: 801 VVGLAVLQQE 810



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 5/161 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             + H  A+ +  +    ++  + R    D  E       + +  + +    ++L   + 
Sbjct: 450 DSLAHVIAELERILSCEANIYEEIRKEIVDVGERYGDDRRTEITCSQTILEREDLIEDKP 509

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +++++ + + KR     +R+  R G+G+            ++  +F  + +D ++  + 
Sbjct: 510 VLISITTQNYIKRLPLETYRMQRRGGRGVIGMATKD---EDSVEDIFVASMHDYLLCFTT 566

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAK--DERVVSVERI 897
            G +  + V  I  ASR +KG  I +  +  DE + +V  I
Sbjct: 567 DGRVYWLKVYNIPEASRTSKGKAIVNLLELQDELITAVIPI 607


>gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
 gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC
           27560]
          Length = 833

 Score =  752 bits (1942), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/831 (40%), Positives = 508/831 (61%), Gaps = 38/831 (4%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M+++    +K + KCARI G+ MGK
Sbjct: 1   METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IY AL  MAQ+W+ R  L++G GNFGS DGD  AA RYTE RL K +  ++ 
Sbjct: 61  FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTV+F PN+D + +EP VL +RYPN+LVNG  GIAVGMATNIP HNL E ++  V 
Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180

Query: 205 VIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +IDN      D  ++ +MEII+GPDFPTGA ILGR  I+ AY TGRG I  R VS IE  
Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATILGRKDIEQAYRTGRGKIKTRAVSEIETM 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
              + +I+VTE+PY VNKA ++EKIA LV+EK++  I DLRDESD++G RVVIE++R A+
Sbjct: 241 DNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDAN 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+VILNQLY++T LQ  F V M+AL   +P+   L+ +L  ++  +++VV RRTK+ LNK
Sbjct: 301 ANVILNQLYKHTQLQDSFGVIMLALVDGEPKVLNLLQMLDEYLKHQKDVVTRRTKFELNK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +RAH++ GL IA+ N+DEV++IIR S     A++ L++R                   
Sbjct: 361 AEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIER------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LS+ Q++AI+++RL +LTGL R+D+  E   L  +I     IL+  ++LL 
Sbjct: 402 -------FGLSDAQSQAIVDMRLRQLTGLAREDLEAEYADLMAKIDYLKSILADENKLLT 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           +IK+E+  ++D+    RRT+I   + D+ DED I  ED VV +++LGY+KR+ +  +++Q
Sbjct: 455 VIKEEIEVIRDKFGDERRTKIGINVGDLSDEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGGKG  G+   D+DF+ D+F+VSTH  +LF ++ G +YK K + +P     ARG A++
Sbjct: 515 NRGGKGIKGMQTIDKDFMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIV 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L  GE+I+ ++   E E    + Y++ ATK G +++  +  +  I +SG  A+ L 
Sbjct: 575 NLLQLQPGEKISAMVQMKEFE---EDKYLIMATKKGTIKKTPIMAYTNIRKSGIQAITLR 631

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE++ V      ++I+L TK GQ ++F  + +R   GR+++GVRGI L + D+VISM 
Sbjct: 632 EDDELIDVTISDNNDNIMLITKKGQGIKFRETDVRE-TGRSAMGVRGIELNQDDEVISMQ 690

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +    +         M   +                     +     E    +       
Sbjct: 691 LESQGECVLIVSANGMGKRT--PFTDFKLQNRGGKGVKCYKISDKTGEVVGAKAVNDGNE 748

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           I+ ++ +G   R    D  I  R   G++  +    ++I  + ++  V ++
Sbjct: 749 IMMITNEGIVIRMFVDDISILGRVTLGVKLMNTGDKDDI-VVASITKVKES 798


>gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728]
 gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728]
          Length = 831

 Score =  751 bits (1938), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/864 (39%), Positives = 496/864 (57%), Gaps = 47/864 (5%)

Query: 1   MTEHIISSDEEEE---KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M++      E  E     I  V +  +MQ SYL YA++VI+GRA+PD+RDGLKPVHR+IL
Sbjct: 1   MSDPNQPELEVPEVGAGRIEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +GM   G   ++ YVKC+R+ G+VMG+YHPHG++AIYD+L RMAQ WS+R  LI+GQGNF
Sbjct: 61  YGMYDGGYRPDRGYVKCSRVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS   DP AA RYTE RL   A  +L D+ +D+VDF PNYDG   EP VL AR PN+LVN
Sbjct: 121 GSPGNDPAAAMRYTESRLDPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILG 233
           G  GIAVGMAT IP HNL EV       +DN     +  L+AL+++++GPDFPT A+I+G
Sbjct: 181 GSEGIAVGMATKIPPHNLREVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIVG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R GI++AY TGRGSI +R V  +E+    R  +VVTE+PYQVN   + E+IAELV++ ++
Sbjct: 241 RAGIEDAYRTGRGSIRMRAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKL 300

Query: 294 VDIADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
             IAD+R+ES  R G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL    P   
Sbjct: 301 NGIADIREESSGRTGMRLVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTL 360

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L   ++ +VA + EV+VRRTK+ L KA +RAH+L GL  A+  LD V+ +IR SP+ E 
Sbjct: 361 NLAQFVRHYVAHQIEVIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEE 420

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           ++  LM                            + + E+Q  AIL+++L RL  L R  
Sbjct: 421 SKTGLM--------------------------NLLEVDEIQATAILDMQLRRLAALERQK 454

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I +EL  +  +I +  DIL+   R   IIK EL ++  +    RRT+IV    ++  ED 
Sbjct: 455 ILDELAEIEAKIADLEDILAKPERQRQIIKDELGAIVAKWGDERRTKIVPFEGEVNMEDL 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RED+VVT++  GY KR  + +YR+QRRGGKG SG  ++ +D V+  F+ STH  +LFF
Sbjct: 515 IAREDVVVTITRGGYAKRTKVDLYRSQRRGGKGVSGATLKQDDLVSHFFVCSTHDWMLFF 574

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G VY+ K + LP  S  ARG+ + N+L+    E+I  +M     +      Y+V AT
Sbjct: 575 TNKGRVYRAKAYELPEASRTARGQHVANLLAFQPDEQIAQVMQISGYDV---APYLVLAT 631

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G V++ KL+DF      G I + L   DE++       ++D+LL +K  Q +RF  S 
Sbjct: 632 RRGLVKKTKLTDFDSPRTGGVIGINLRDGDEVVGAALINPDDDLLLVSKKAQAIRFMASD 691

Query: 713 --IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDT 769
             +R   GR + GV G+   + D++++M +V    D        Y K    +     G  
Sbjct: 692 ESLRPM-GRATSGVIGMRFVEADELLTMEVVRGGMDILVATSGGYAKRTPVEEYPQQGRG 750

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIR 828
            +       +   GN+           +  +  ++ +G   RT     R +  R+  G++
Sbjct: 751 GKGVLTAKITERRGNLVGALSV---TPDDELFAITSEGGVIRTPVKPVRRTTDRNTMGVK 807

Query: 829 ATDVSKINEIGALVAVFPVNDNDQ 852
             D+ +   +  L      ++ D+
Sbjct: 808 LMDLPEGVSL--LAMARSADEPDE 829


>gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii
           M21/2]
          Length = 860

 Score =  750 bits (1935), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/853 (39%), Positives = 508/853 (59%), Gaps = 38/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L 
Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +L+ 
Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+  +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQRRGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   +D    +  YV   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDA-EQSGGYVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF     R   GR
Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N  GVR I LA+GD+V+ + I           +   ++   +R  I          K   
Sbjct: 692 NGHGVRAIRLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 747

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + + +  +    ++      +L  S++G   R  + +  + +R G G+R   + + ++  
Sbjct: 748 NYDVSRDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDK-- 805

Query: 840 ALVAVFPVNDNDQ 852
             V V    D+D 
Sbjct: 806 --VMVLARTDHDD 816



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   +++ S+        D++  +     + A  +    + ++    +  + ++    E 
Sbjct: 445 LKIEEELASL---HAKIEDWEAILADDARVLAIVKDELLEMKKRFGDERRTEIQSVTGEV 501

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +EQ + T++E G+ KR     ++   R G+GI         E   +  +F  +
Sbjct: 502 DIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMT---RKEEDIVQEMFVGS 558

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
            +D ++ V+D+G L R+    I   SR +KG   V +   A+ E+V ++
Sbjct: 559 THDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNM 607


>gi|94502320|ref|ZP_01308795.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|161833641|ref|YP_001597837.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
 gi|94451125|gb|EAT14075.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|152206130|gb|ABS30440.1| type IV DNA gyrase A subunit [Candidatus Sulcia muelleri GWSS]
          Length = 820

 Score =  749 bits (1934), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/899 (35%), Positives = 513/899 (57%), Gaps = 101/899 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G   +K Y
Sbjct: 3   ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+P
Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E ++   + IDN +I ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG I++R
Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H EK    R  I++ EIPYQ+ KA  + K  ELV+E R+  +  +RDESDR G R+V
Sbjct: 243 SKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+  +  ++LN L++ T L++ FSVN +AL   KP +  L  ++K FV  R  V++R
Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY LNKA+ RAH++ G  + + +L+ V+ +I+ S + E A+ +L+ +           
Sbjct: 362 RTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q ++ILEL+L  LT L  + I+ E   L  +I     IL
Sbjct: 411 ---------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKISSYKRIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + +     IIK+EL  +K++    RRT I    L+   E     + +V+T S+ GY+KR 
Sbjct: 456 NDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLE---PNKQVVLTTSYDGYMKRT 512

Query: 552 PLSVYRAQRR--GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            L+ Y+ +    GG    G     +DF+  + + +TH  +LFF+  G  +  +V+ +P  
Sbjct: 513 DLNEYKIKNIGVGGIVNMGAYKLKKDFIKHILVANTHQYMLFFTEKGKCFWLRVFEIPEV 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDE--SSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              ++G+A+ N++ +++ ++I + +   +       NN YV+  TK G +++  L  + +
Sbjct: 573 YKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSK 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N++G  A+K+   D ++  +    +++IL+  K G+ +RF  S +R    R ++GV+ I
Sbjct: 633 PNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFSESTVRPMT-RITLGVKSI 691

Query: 728 SLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +L+K    D+VI M  +                                           
Sbjct: 692 TLSKLLSKDKVIGMICINDP---------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      K+++IL +SE GF K ++   +R +    +GI+  +++  ++ G LVA+
Sbjct: 712 -----------KKEYILVISENGFVKISNLSHYRKT---DQGIKTINIT--SKTGCLVAI 755

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVIFSTAKDERVVSVERIR 898
             V + D II+++  G  IR+PV EI +  RAT     KG+ + +     ++ SV ++ 
Sbjct: 756 KNVVNKDDIIIINQSGLTIRIPVTEIIVRVRATKGNKGKGIKLINLKS--KIASVAKVD 812


>gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 864

 Score =  749 bits (1933), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/853 (39%), Positives = 507/853 (59%), Gaps = 38/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 5   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 64  HERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 124 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 183

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 184 GIAVGMATNIPPHNLSEVIDGCIAYIDDPDIDLPGLMEYIKGPDFPTAGIIMGRSGIRAA 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L 
Sbjct: 244 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLN 303

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +L+ 
Sbjct: 304 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 364 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 423

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 424 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 457

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I+    IL+  +R+L I+K+ELL +K      RRT I     +++ ED I  E  V
Sbjct: 458 LQAKIENWEAILADDARVLAIVKEELLEMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 517

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQRRGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 518 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 577

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++     E+     +V   TK G ++R
Sbjct: 578 RIKGYTIAEGSRTSKGSNIVNLLQLAEGEKVTNMIC-QSKEADTEGGFVTMVTKQGLIKR 636

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF  +  R   GR
Sbjct: 637 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEADARPM-GR 695

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  GVR I LA+GD+V+ + I           +   ++   +R  I          K   
Sbjct: 696 SGHGVRAIRLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 751

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + +    +    ++      +L  S++G   R  + +  + +R G G+R   + + ++  
Sbjct: 752 NYDAAKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDK-- 809

Query: 840 ALVAVFPVNDNDQ 852
             V V    D+D 
Sbjct: 810 --VMVLARTDHDD 820



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   +++ S+   +    +++  +     + A  +    + ++    +  + ++    E 
Sbjct: 449 LKIEEELASLQAKIE---NWEAILADDARVLAIVKEELLEMKKRFGDERRTEIQSVTGEV 505

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +EQ + T++E G+ KR     ++   R G+GI         E   +  +F  +
Sbjct: 506 DIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMT---RKEEDIVQEMFVGS 562

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSV 894
            +D ++ V+D+G L R+    I   SR +KG  I +    A+ E+V ++
Sbjct: 563 THDYVLFVTDRGRLFRIKGYTIAEGSRTSKGSNIVNLLQLAEGEKVTNM 611


>gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3]
          Length = 860

 Score =  748 bits (1932), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/853 (39%), Positives = 508/853 (59%), Gaps = 38/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKKIIR-DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHAYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+D+ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGC+A ID+P+IDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCIAYIDDPEIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +A+LV+EKRI  I  L 
Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +L+ 
Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVLTLKQMLQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL S
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELAS 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++   IL+  +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQRRGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDRGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  ++N+L L +GE++T ++   +D    +  YV   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNMICQSKDA-EQSGGYVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I +SG I + L+  D +      +  + +++ T+ GQ +RF     R   GR
Sbjct: 633 TPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N  GVR I LA+GD+V+ + I           +   ++   +R  I          K   
Sbjct: 692 NGHGVRAIRLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 747

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + + +  +    ++      +L  S++G   R  + +  + +R G G+R   + + ++  
Sbjct: 748 NYDVSRDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPLQSRYGSGVRVMRLGENDK-- 805

Query: 840 ALVAVFPVNDNDQ 852
             V V    D+D 
Sbjct: 806 --VMVLARTDHDD 816



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   +++ S+        D++  +     + A  +    D ++    +  + ++    E 
Sbjct: 445 LKIEEELASL---HAKIEDWEAILADDARVLAIVKDELLDMKKRFGDERRTEIQSVTGEV 501

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +EQ + T++E G+ KR     ++   R G+GI         E   +  +F  +
Sbjct: 502 DIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMT---RKEEDIVQEMFVGS 558

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
            +D ++ V+D+G L R+    I   SR +KG   V +   A+ E+V ++
Sbjct: 559 THDYVLFVTDRGRLFRIKGYTIAEGSRTSKGMNIVNLLQLAEGEKVTNM 607


>gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM
           15897]
          Length = 815

 Score =  748 bits (1931), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/839 (40%), Positives = 511/839 (60%), Gaps = 36/839 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++GI  + +T EM+ S++ YA++VI+ RA+PD +DGLKPV RRI+ GM ++G   +K Y
Sbjct: 2   EQRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEVMGKYHPHG+++IY+AL RMAQ +S R +L++G GNFGS+DGD  AA RYT
Sbjct: 62  KKSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  ++ D+ KDTVDF PNYDG  +EP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 122 ESRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           +HNLGEVVD  +AV  NPDI +  LM   I GPDFPTGA ILGR  IK AY TG G IV+
Sbjct: 182 SHNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYILGRGAIKKAYETGNGLIVM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE    +++ I+VTE+PY VNKA ++EKIA  V+EK I  I +LRDESDR+G R+
Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL+R    +VILNQLY+ T+LQ+ F VN +AL   +P+  +L  ++  ++  +E+V+ 
Sbjct: 302 VIELRRDVQPEVILNQLYKLTALQTTFGVNNIALVNGEPKTLSLKEMINVYLEHQEDVIR 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + L KA DRAH+L GL  A+  +D ++ +IR S   E  ++ LM            
Sbjct: 362 RRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLM------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q +AI E++L RL GL R+ I NELN+L   I +  DI
Sbjct: 410 --------------DEFDMSERQAKAIREMQLQRLAGLEREKIENELNTLLETIADLKDI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           L+++ R++ II QELL +K +    RRT I++G  D+EDED I  ED+V+++++ GYVKR
Sbjct: 456 LANKERIIAIIDQELLEIKAKYGDKRRTEIIQGSFDIEDEDLIPEEDVVISLTNNGYVKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +P+  Y+AQ RGGKG  G+   ++D V  L  +STH  +L F++ G VY+ K + +P   
Sbjct: 516 MPIDTYKAQNRGGKGIKGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFG 575

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            QA+G  +IN+L++++ E++ T++          + ++ F TK G V+R  L +F  I +
Sbjct: 576 RQAKGLPIINLLNMDKDEQVKTMISITP-SEVDESHFLFFVTKDGLVKRTGLPEFENIRQ 634

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGK+A+ L   DE++ V+    +++ILL    G+ +RF  + +R   GR++ GV+G+++ 
Sbjct: 635 SGKLALTLREGDELVDVKLTNGKSEILLAAANGKAIRFDENDVRPM-GRSASGVKGMNV- 692

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
               +I   +  + +      I    +           ++         ++     E   
Sbjct: 693 DDSHIIG--VTTNTEGQNILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVS 750

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +     + ++ ++ +G   R      + + R+ +G+R   V +    GA V+   V D
Sbjct: 751 IKAVEGNEDLMIITNEGIIIRLPMEQVKSAGRATQGVRLIKVGE----GASVSSITVVD 805


>gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6]
          Length = 859

 Score =  747 bits (1928), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/853 (39%), Positives = 513/853 (60%), Gaps = 38/853 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  +       K I    +  E++ ++L Y+++VI+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MEEDYVMIPGSGTKMIIR-DVKKEIETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G + +  Y K A   G V+G YHPHG+A++YDA+ R+AQD+SLR  L++GQGNFGSV
Sbjct: 60  HERGNDPSHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGDPPAA RYTE R+ + A  +L D+ KDT+++ PN+D + +EP VL  R+PN+LVNG  
Sbjct: 120 DGDPPAAYRYTEARMSRMAVEMLTDIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQ 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+DGCVA I++PDIDL  LME I+GPDFPT  +I+GR+GI+ A
Sbjct: 180 GIAVGMATNIPPHNLSEVIDGCVAYIEDPDIDLPGLMEHIKGPDFPTAGIIMGRSGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG I +RG + IE+T   R QI++TEIPY VNKA ++E +AELV++KRI  I  L 
Sbjct: 240 YATGRGKITLRGRATIEETKNGRTQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLN 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE++R+G R+V+++++ A+A VILNQLY+YT LQ    V M+A++   P+  TL  +++ 
Sbjct: 300 DETNRKGMRIVVDIRKDANAQVILNQLYQYTQLQDTVGVIMLAIDHKVPKVMTLKQMIQK 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQ 419
           +V F++EVV RRT+Y L KA++RAH+L GL  A   +DE++  IR        A+  +M+
Sbjct: 360 YVEFQDEVVRRRTQYDLKKAKERAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                              + Q  AI++L+L RL GL    I  EL+ 
Sbjct: 420 Q--------------------------FGFDDPQADAIVKLQLGRLAGLEILKIEEELSG 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  +I++  DIL++ +R+L I+K ELL +K      RRT I     +++ ED I  E  V
Sbjct: 454 LQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDERRTEIQSVTGEVDIEDLIAEEQCV 513

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            T++  GY+KR   + Y+AQ+RGG+G SG+  ++ED V ++F+ STH  VLF +  G ++
Sbjct: 514 YTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMFVGSTHDYVLFVTDKGRLF 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +  GS  ++G  +IN+L L +GE++T ++ +P+DE      +V   TK G ++R
Sbjct: 574 RIKGYTIAEGSRTSKGSNIINLLQLAEGEKVTNMLCYPKDE-DNKGGFVTMVTKQGLIKR 632

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L  +  I ++G I + L+  D +      T  + +++ T+ GQ +RF  +  R   GR
Sbjct: 633 TPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLIVATRNGQAIRFNEADARPM-GR 691

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           +  GVR I LA+GD+V+ + I           +   ++   +R  I          K   
Sbjct: 692 SGHGVRAIKLAEGDEVVGVCICREGG----TVLTVTENGKGRRSDIDTYRITARGGKGIR 747

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           + + +  +    ++      +L  S++G   R  + +  + +R G G+R   + + ++  
Sbjct: 748 NYDASKDKVAAVKIVDDIDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDK-- 805

Query: 840 ALVAVFPVNDNDQ 852
             V V    D+D 
Sbjct: 806 --VMVLARTDHDD 816



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 85/193 (44%), Gaps = 12/193 (6%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +++  GR + G+  + + +      ++ +     D+++ +     +    +    D ++ 
Sbjct: 432 VKLQLGRLA-GLEILKIEEE-----LSGLQAKIEDWEDILANDARVLEIVKNELLDMKKR 485

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              +  + ++    E   ++L  +EQ + T++E G+ KR     ++   R G+GI     
Sbjct: 486 FGDERRTEIQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMT- 544

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDE 889
               E   +  +F  + +D ++ V+DKG L R+    I   SR +KG  I +    A+ E
Sbjct: 545 --RKEEDIVQEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGSNIINLLQLAEGE 602

Query: 890 RVVSVERIRESEI 902
           +V ++    + E 
Sbjct: 603 KVTNMLCYPKDED 615


>gi|119961287|ref|YP_945840.1| DNA gyrase subunit A [Arthrobacter aurescens TC1]
 gi|119948146|gb|ABM07057.1| DNA gyrase, A subunit [Arthrobacter aurescens TC1]
          Length = 889

 Score =  747 bits (1927), Expect = 0.0,   Method: Composition-based stats.
 Identities = 335/927 (36%), Positives = 479/927 (51%), Gaps = 103/927 (11%)

Query: 1   MTEHIISSDEEEE------------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDG 48
           M++      E  +              +  V +  EMQ SYL YA+ VI+GRA+PD+RDG
Sbjct: 1   MSDETPEVPEPNDVEDVVLEGDVLTDRVEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDG 60

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+L+ M   G   ++ + KCAR+ G+VMG YHPHG+ AIYDAL R+ QDW++R 
Sbjct: 61  LKPVHRRVLYAMFDGGYRPDRSFNKCARVVGDVMGTYHPHGDMAIYDALVRLIQDWTMRY 120

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            L  GQGNFGS   D  AA RYTE ++ + A  ++ D+ ++TVDF+ NYDG  QEP +L 
Sbjct: 121 PLALGQGNFGSPGNDGAAAPRYTETKMAQLAMEMVRDIDEETVDFQDNYDGKNQEPTILP 180

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPD 224
           AR+PN+LVNG  GIAVGMATNIP HNL EV +G    +DNP       L+AL+  I+GPD
Sbjct: 181 ARFPNLLVNGSSGIAVGMATNIPPHNLREVAEGVQWALDNPTATREELLEALLLRIKGPD 240

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPTGA ILG  GI++AY TGRGSI +R V ++E+    R  +VVTE+PYQ N   +  KI
Sbjct: 241 FPTGATILGHKGIEDAYRTGRGSITMRAVVNVEELQ-GRTCLVVTELPYQANPDNLAIKI 299

Query: 285 AELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           AELV++ +I  IADLRDE S R G R+VI LKR A A V+LN LY++T LQ  FS NM+A
Sbjct: 300 AELVKDGKIQGIADLRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKHTQLQDNFSANMLA 359

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +    P   +L   ++ +VA + +V+ RRT+Y L KA + AH+L  L  A+  LDEV+ +
Sbjct: 360 IVDGVPRTLSLDAFIRHWVAHQMDVIARRTRYRLRKAEEEAHILRALLKALDMLDEVIAL 419

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR S   E AR  LM+                           + + E+Q RAIL+++L 
Sbjct: 420 IRASNTTEAAREGLME--------------------------LLEIDELQARAILDMQLR 453

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE- 522
           RL  L R  I++  + L   I+E   IL+S  R   II +EL  +  +    RRT I+  
Sbjct: 454 RLAALERQKIQDRHSELEAMIQEYNAILASEERQRQIISEELAEIVAKHGDDRRTHILMG 513

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
              DM  ED I  E+MVVT++  GYVKR     YR+Q+RGGKG  G  +R +D V   F+
Sbjct: 514 FDGDMSMEDLIPEEEMVVTITRGGYVKRTRSDNYRSQQRGGKGIKGAQLRGDDVVEHFFV 573

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            +TH  +LFF++LG VY+ K + L      A+G+ +    +L   +    I    +    
Sbjct: 574 TTTHHWLLFFTNLGRVYRAKAYELAEAGRDAKGQHVA---NLLAFQPDEHIAQVLDLRDY 630

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
               Y+V                                                  TK 
Sbjct: 631 QQAPYLVL------------------------------------------------ATKN 642

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G   +  +        R + GV  I+L   D+++S  +V   D                 
Sbjct: 643 GLVKKTRLEDY--DTNRTA-GVIAINLRDEDELVSAQLVSETDDLLLVSRKGQSIRFTAT 699

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                     TS            E    ++     F+  V+E G+ KRT+  ++R+  R
Sbjct: 700 DDALRPMGRATSGVT-GMKFREDDELLAADVVQDGSFVFIVTEGGYAKRTAVDEYRLQGR 758

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            G GI+   +++  + G LV    V + D++++V + G ++R  V  +    R T GV+ 
Sbjct: 759 GGLGIKVAKLAE--DRGDLVGALIVQEEDEVLVVMEGGKVVRSAVTGVPAKGRDTMGVIF 816

Query: 883 FSTAKDERVVSVERIRESEIV-DEAES 908
               K++R++ V R  E  +  +E+E 
Sbjct: 817 AKPDKNDRIIEVARNSERGLEVEESED 843



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 15/271 (5%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
             +   +V  +  G VK+  L  Y   R  G     + +RDED +    +VS    +L  
Sbjct: 630 YQQAPYLVLATKNGLVKKTRLEDYDTNRTAG--VIAINLRDEDELVSAQLVSETDDLLLV 687

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S  G   +       +  P  R  + +  +   + + +             +  +V   T
Sbjct: 688 SRKGQSIRFTATDDAL-RPMGRATSGVTGMKFREDDELLAADVVQ------DGSFVFIVT 740

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRF 708
           + G  +R  + ++ ++   G + +K+    E    ++      +E+++L+  + G+ VR 
Sbjct: 741 EGGYAKRTAVDEY-RLQGRGGLGIKVAKLAEDRGDLVGALIVQEEDEVLVVMEGGKVVRS 799

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ +    GR+++GV      K D++I +A       + +E    +             
Sbjct: 800 AVTGV-PAKGRDTMGVIFAKPDKNDRIIEVARNSERGLEVEESEDGLDDDVTLAANDGAS 858

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQF 799
              +T+   + +     +     E       
Sbjct: 859 EATVTAETENDADPEFETGAELNEDNTGGNE 889


>gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 823

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/905 (36%), Positives = 512/905 (56%), Gaps = 93/905 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +E        E+  +    + DE+  SYL+Y+++VI+GRAIPD+RDGLKPV RRI++ M 
Sbjct: 7   SEINNEIKSNEQNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMY 66

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  NK + K ARI GEVMGKYHPHG+++IY+AL RMAQ W +R  L+EGQGNFGS+D
Sbjct: 67  ELGLFHNKPFKKTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSID 126

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DPPAA RYTE RL K A  +++D+ K TV    N+DGS QEP VL A+ PN+L+NG  G
Sbjct: 127 RDPPAAMRYTEARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASG 186

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATNIPTHNL +VVD  +A I N DI ++ L++II+GPDFPTG +I+G++GI+  Y
Sbjct: 187 IAVGMATNIPTHNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGIIIGKSGIREMY 246

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG+G   IRG + I K    ++ I++TEIPY ++KA ++++IA+ ++E+ I  + DLRD
Sbjct: 247 ITGKGGFTIRGKAEI-KHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRD 304

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKA 360
           ESD+ G RVVIE       +VILN LY+ T+LQ+ F+ N + ++G K P    L  +++A
Sbjct: 305 ESDKDGLRVVIEFPEDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEA 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R EVV +RT+Y   +   RAH++ GL  A   +D VV IIR S +   A  +L+  
Sbjct: 365 YVKHRFEVVRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLV-- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                     + +SE Q +A+L++RL RLT L   +++ E   L
Sbjct: 423 ------------------------DILQMSEEQAKAVLDMRLGRLTNLETQNLQQEYRDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCIVRED 537
            + +++  ++L +  ++  +I +EL  +K +   PR+T I +        + +D I  +D
Sbjct: 459 LVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGDPRKTEITDLEETATKFDKKDLIPNKD 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +V+T++  G++K + +  +R QRR GKG  G  + ++D ++ +     H+  LFF+SLG 
Sbjct: 519 IVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANLMEDDIISQIIYSKLHSKTLFFTSLGK 578

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ +   +   +   +GK +   + L  GER+  ++   +         + F TK G V
Sbjct: 579 VYEIENLDIEESNRGTKGKPINKYIKLENGERVLAMVDITDYVGE-----LFFVTKKGVV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R  L DF  I   G  A+     DE++SV    ++ N +L++TKLG  +RF I  +R  
Sbjct: 634 KRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTM 693

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GRN+ GVRGI L +GD+VIS  ++                                   
Sbjct: 694 -GRNAAGVRGIRLREGDEVISSTVL----------------------------------- 717

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                            +    +ILT++E G+GK T   D+R  +R G GI+     +I 
Sbjct: 718 -----------------ENDNGYILTITENGYGKLTEVSDYRKQSRDGLGIKNI--GEIE 758

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G +V V  VN +++I+L +  G  I+  V++I   SR  +GV + + A  + V     
Sbjct: 759 KTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDIVADFAV 818

Query: 897 IRESE 901
           I   E
Sbjct: 819 IGGEE 823


>gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 731

 Score =  746 bits (1925), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/808 (40%), Positives = 486/808 (60%), Gaps = 83/808 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y
Sbjct: 3   EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG++++Y A+ RMAQ+W++R  L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    ++DDL K+TVDF PN+D +  EP V+  R PN+LVNG  GIAVGMATN+P
Sbjct: 123 EARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D C A IDN +I ++ LM  ++ PDFPTG  I G +G++  Y TGRG +V+R
Sbjct: 183 PHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIYGISGVREGYLTGRGRVVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE      ++IVVTEIPY VNKA +++ IA+LV +KRI  I++  DESDR G R+V
Sbjct: 243 AKAEIETGQT-HDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++KR A+A V+LN+LY+ T+LQ+ F VN VAL   +P+   L  ++K FV  R EVV+R
Sbjct: 302 IDVKRDANASVVLNKLYKMTALQTSFGVNNVALVHGRPKTLNLRDMIKYFVEHRHEVVIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA++RAH+L GL IA  N+DEV+RIIR +  P  A   L++R           
Sbjct: 362 RTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E+Q+RAI+E+RL +LTGL +D +  E   +  +I     IL
Sbjct: 411 ---------------FNLTEIQSRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +       ++K ELL VK +    RR+ IV    +   ED    + M++T+SH+GY+KR 
Sbjct: 456 ADDEVCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           PL+ +RAQ RGG G  G   RD DFV  ++  + H +++FF+  G  Y  KV+ +P G+ 
Sbjct: 516 PLTEFRAQNRGGVGSKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTK 575

Query: 612 QARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            ++G+A+ N+L+++  + +T  +     +D    N+ YV+F TK G +++  L  + +  
Sbjct: 576 NSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPR 635

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           ++G  A+ +   D ++ V      N+I++  + G+ +RF  +A+RV  GR + GVRGI+L
Sbjct: 636 QNGVNAITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVM-GRTATGVRGITL 694

Query: 730 AKG--DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                D+VI M  +   +                                          
Sbjct: 695 DNDGQDEVIGMICIKDLET----------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     + ++ VSE+G+GKR+   
Sbjct: 714 ----------ESVMVVSEQGYGKRSEIE 731



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 22/228 (9%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMA 739
               +  I+  + +G   R P++  R    R  VG +G      D V          +M 
Sbjct: 496 FYADDQMIITISHMGYIKRTPLTEFRA-QNRGGVGSKGTETRDADFVEHIYPATMHNTMM 554

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                   Y  ++  +   +   +  +          +  +    +      E      +
Sbjct: 555 FFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNIDSDDSVTAYLRVKSLDDTEYINSH-Y 613

Query: 800 ILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           +L  ++KG  K+T    +     N    G+ A  + +     +++ V   N N++II+ +
Sbjct: 614 VLFCTKKGVIKKTLLEQYSRPRQN----GVNAITIRE---DDSVIEVRMTNGNNEIIIAN 666

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRESEIV 903
             G  IR     +R+  R   GV   +   D  + V+ +  I++ E  
Sbjct: 667 RNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQDEVIGMICIKDLETE 714



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 86/211 (40%), Gaps = 18/211 (8%)

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAK-----GDQVISM-AIVLHADADYDERICYMK 756
           G   RF ++ I+      S  +  + L +      DQ+ +    ++   A  +  +   +
Sbjct: 406 GLIERFNLTEIQ------SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDE 459

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                 +    + +     +  S +  +  E   ++    +Q I+T+S  G+ KRT   +
Sbjct: 460 VCRKVMKDELLEVKAKYGDERRSEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTE 519

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           FR  NR G G +    ++  +   +  ++P   ++ ++  + KG    + V EI   ++ 
Sbjct: 520 FRAQNRGGVGSKG---TETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKN 576

Query: 877 TKGVVIFST---AKDERVVSVERIRESEIVD 904
           +KG  I +      D+ V +  R++  +  +
Sbjct: 577 SKGRAIQNLLNIDSDDSVTAYLRVKSLDDTE 607


>gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
 gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister
           micraerophilus DSM 19965]
          Length = 812

 Score =  745 bits (1924), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/844 (39%), Positives = 500/844 (59%), Gaps = 40/844 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I S  +  +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +K +
Sbjct: 4   QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+Y++  RMAQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 64  RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG  GIAVGMATNIP
Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +HNLGEVVDG  A+IDNP+I +D LM  ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R
Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ S  + +IVVTEIPYQVNKA ++E IAEL ++K I  I  LRDESDR G R+V
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN L+++T L+  F   M++L    P   +L  ++  ++  +EEV+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S     A+  LM +           
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL RLTGL R+ I ++   +   I    D+L
Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S R++++ ++K EL+ +K++    RRT+  +     +  D +  E M +TV+   Y+KR+
Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R QR+GG+G SG+ M+D+D+V  +   STH  +LFF+  G VY + V   P+ S 
Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG ALIN +     +          D S+    Y++  T++G V++  + ++  IN++
Sbjct: 578 TARGSALINFIP-TLEKDERVTEMLDPDMSTEGVKYLLMITRYGYVKKTLIEEYKHINKN 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISL 729
           G IA++L+  D ++ V     + D++L T+ G  +RF I    IR   GR + GV GI L
Sbjct: 637 GIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRAV-GRVAAGVHGIKL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + GD+V+   I    D          K        + G   +             +    
Sbjct: 696 STGDEVVGAVIADEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVA-- 753

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++ VSE G   +TS+        ++G+G+    + + +    + ++  V 
Sbjct: 754 ----ADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDR---IASIDVVP 806

Query: 849 DNDQ 852
           + ++
Sbjct: 807 EENE 810


>gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 813

 Score =  744 bits (1921), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/876 (39%), Positives = 489/876 (55%), Gaps = 87/876 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +  ++  I  + +  E + SY+ YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+ 
Sbjct: 21  EDNRPQDVRIVPMELHKEAEESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLS 80

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K + KCAR+ GEV+GK+HPHG+ A+YDAL RMAQD+SLR  L+ G GNFGS+DGDP A
Sbjct: 81  SKKPFKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAA 140

Query: 127 AERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           A RYTECRLQ  +  + L DL  DTVDF P +DGS  EP VL AR PNVL+NG  GIAVG
Sbjct: 141 AMRYTECRLQGLSEAMLLADLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVG 200

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EVVD  +A++ NP+  ++ LME + GPDFPTG  ILG  GI +AY  G 
Sbjct: 201 MATNIPPHNLAEVVDALIALLHNPNATVEELMEHLPGPDFPTGGQILGTDGILDAYRFGH 260

Query: 246 GSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G + +RG + IE      +R  ++++E+PYQ NKAA++EKIA+LV  K +  ++D+RDES
Sbjct: 261 GRLTVRGKASIEQLDRRSNRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDES 320

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+VIE+KRGA   V+LN LY+YT+LQ+ FS NMV + G +P+   L   L+ FV 
Sbjct: 321 DRFGMRIVIEVKRGAMPKVVLNNLYKYTTLQTRFSCNMVGIIGGEPKVMGLKDFLETFVE 380

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR  V+ RR K+ L +A DR H++ G+ I ++NLD VV+IIR + +   A   L +    
Sbjct: 381 FRCSVIERRAKFQLKRAEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQK---- 436

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    ++  Q  A+L + L RLT L    ++ E ++L  E
Sbjct: 437 ----------------------GFNVTPAQADALLAMPLRRLTSLESGKLKEEHDALTAE 474

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTV 542
           I +   +L S+ R+L II++E L +K E  TPRRT + +    ++ D D I  E+ +VT+
Sbjct: 475 ITDLKQLLESKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGEINDIDVIANEETIVTL 534

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KR+    + AQ RG  G+SG  MR  D ++D F+  TH  VLFFS  G VY  +
Sbjct: 535 SEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSNDAMSDFFVCRTHDYVLFFSERGIVYSIR 594

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            +++P  S  + G  L+ ++ +  GERIT++    +      + Y+V  T  G ++R  L
Sbjct: 595 AYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFA---EDQYLVMLTTGGYIKRTAL 651

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           S F  I  +G +A++L   DE+  V    +E+ + L ++ G  V       +V  GR + 
Sbjct: 652 SSFASIRSTGIVAIQLTPGDELKWVRNAAEEDTVALASQRGMVVCIGCDDDKVL-GRATR 710

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR + L   D++ +M IV                                         
Sbjct: 711 GVRAMRLRGDDKLTAMDIVPA--------------------------------------- 731

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              S  R    K    ++L V+E GFGKR     F        G+    V          
Sbjct: 732 ---SLVRTGTKKTGAPWLLMVTEDGFGKRVPIKAFPKGVAGRVGVIGCKVKTDG------ 782

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
                   +Q+++ S+KG L R+ V ++ I SR  K
Sbjct: 783 -----ESEEQVVVGSNKGILNRLRVRDVSIQSRTAK 813



 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 79/226 (34%), Gaps = 15/226 (6%)

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             EI  ++    E  I+  ++ G   R           R + G  G  +   D +    +
Sbjct: 516 DGEINDIDVIANEETIVTLSEKGYIKRMAAGTF-TAQNRGTTGKSGGKMRSNDAMSDFFV 574

Query: 741 VLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
               D      +  I Y                              I+  +      ++
Sbjct: 575 CRTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFAED 634

Query: 798 QFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           Q+++ ++  G+ KRT+   F   R +     GI A  ++       L  V    + D + 
Sbjct: 635 QYLVMLTTGGYIKRTALSSFASIRST-----GIVAIQLTPG---DELKWVRNAAEEDTVA 686

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L S +G ++ +  ++ ++  RAT+GV       D+++ +++ +  S
Sbjct: 687 LASQRGMVVCIGCDDDKVLGRATRGVRAMRLRGDDKLTAMDIVPAS 732



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 66/179 (36%), Gaps = 10/179 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +    ++  I               + +    +      +E  + +     +G   E
Sbjct: 463 KLKEEHDALTAEITD----LKQLLESKHRVLQIIEKEALVLKKEYGTPRRTLVEQGRDGE 518

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               ++   E+ I+T+SEKG+ KR ++  F   NR   G     +       A+   F  
Sbjct: 519 INDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKSGGKMR---SNDAMSDFFVC 575

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
             +D ++  S++G +  +   +I   SR + G   V +      ER+ SV+ + +    
Sbjct: 576 RTHDYVLFFSERGIVYSIRAYQIPECSRTSAGNPLVQVVPVPPGERITSVQSVSDFAED 634


>gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
 gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E]
          Length = 812

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/833 (39%), Positives = 496/833 (59%), Gaps = 37/833 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I S  +  +M+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +K +
Sbjct: 4   QEGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+Y++  RMAQD+S R LL++G GNFGSVDGD  AA RYT
Sbjct: 64  RKSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  +L D+ KDTVDF PNYDGS QEPVVL +R PN+LVNG  GIAVGMATNIP
Sbjct: 124 EMRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           +HNLGEVVDG  A+IDNP+I +D LM  ++GPDFPTGA+I+G+ GI++ Y TGRGSI +R
Sbjct: 184 SHNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIMGKKGIQDTYRTGRGSIKVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+ S  + +IVVTEIPYQVNKA ++E IAEL ++K I  I  LRDESDR G R+V
Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN L+++T L+  F   M++L    P   +L  ++  ++  +EEV+ R
Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGHPRVLSLKQMMYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+KA+ +AH+L GL IA+ ++DEV++ IR S     A+  LM +           
Sbjct: 364 RSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q+ AIL++RL RLTGL R+ I ++   +   I    D+L
Sbjct: 413 ---------------FELSEKQSVAILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S R++++ ++K EL+ +K++    RRT+  +     +  D +  E M +TV+   Y+KR+
Sbjct: 458 SDRNKIMKVVKDELIEIKEKFGDERRTQFEKSTEGFDLTDLVPDEPMTITVTKHNYIKRM 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R QR+GG+G SG+ M+D+D+V  +   STH  +LFF+  G VY + V   P+ S 
Sbjct: 518 ESSDIRIQRKGGRGVSGMKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG ALIN +     +          D S+    Y++  T++G V++  + ++  IN++
Sbjct: 578 TARGSALINFIP-TLEKDERVTEMLDPDMSNEGVKYLLMITRYGYVKKTLIEEYKHINKN 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISL 729
           G IA++L+  D ++ V     + D++L T+ G  +RF I    IR   GR + GV GI L
Sbjct: 637 GIIALRLNEGDRLVKVIPVVGDEDVILGTRKGMAIRFSIADDEIRSV-GRVAAGVHGIKL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + GD+V+   I    D          K        + G   +             +    
Sbjct: 696 SAGDEVVGAVIADEKDIFTISADGNAKRNKESAYHVQGRNGKGVRNFKRGFEVVALVA-- 753

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGAL 841
                     ++ VSE G   +TS+        ++G+G+    + + + I ++
Sbjct: 754 ----ADDNDELVGVSEGGITIKTSASQISSKKAKAGQGVILQRLEEGDRIASI 802


>gi|300934343|ref|ZP_07149599.1| DNA gyrase subunit A [Corynebacterium resistens DSM 45100]
          Length = 836

 Score =  743 bits (1917), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/851 (37%), Positives = 490/851 (57%), Gaps = 44/851 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +      +  + +  EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDDTTGGENLF-DRVEPIDLQKEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK A+   + MG YHPHG+ AIY  L RMAQ W++R  L++GQGNFGS 
Sbjct: 60  YDNGYRPERGYVKSAKPVADTMGNYHPHGDLAIYGTLVRMAQPWAMRYPLVDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D  AA RYTECR+   A  ++ ++ ++TVDF+PNYDG  +EPV+L +R PN+L+NG G
Sbjct: 120 GNDGAAAMRYTECRMTPLAMEMVREIRENTVDFQPNYDGKTKEPVILPSRVPNLLMNGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    ++DN        L+A M+ ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLNELADAIFWLLDNHEAEEAEALEACMKRVKGPDFPTAGLIVGDKG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++AY TGRGSI +RGV+ IE+  G+R+ IV+TE+PYQVN   ++  IAE VR+ +I  I
Sbjct: 240 IQDAYRTGRGSIRMRGVTSIEE-EGNRQVIVITELPYQVNPDNLVHNIAEQVRDGKIAGI 298

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           A + DE SDR G R+V+ LKR A   V+LN LY+++ LQ+ F  NM+++    P    L 
Sbjct: 299 ARIDDESSDRVGLRIVVTLKRDAIPRVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRLD 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V  + EV+VRRT+Y L++A  RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 359 QMLRYYVKHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDALDEVIALIRRSQTVDIARE 418

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L+                            + + E+Q  AILE++L RL  L R  I +
Sbjct: 419 GLI--------------------------DLLDIDEIQANAILEMQLRRLAALERQKIID 452

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            L  +   I +  DIL+   R   I++ EL  + ++    RRT+IV    D+ +ED I R
Sbjct: 453 ALAEIEETIADLKDILARPERQRDIVRGELEEIVEKFGDERRTKIVAASGDVSEEDLIAR 512

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  YR+QRRGGKG  G  ++ +D V   F+ STH ++LFF++ 
Sbjct: 513 ENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNF 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ + + LP  S  ARG+ + N+L    GE+I  ++     E   +  Y+V AT HG
Sbjct: 573 GRVYRLRAFELPEASRTARGQHVANLLEFQPGEQIAQVIQIQSYE---DAPYLVLATSHG 629

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+      G IA+ L+  D ++  + CT E+D+LL ++ GQ +RF      +
Sbjct: 630 RVKKSRLTDYDSPRSGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTADDEVL 689

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+   + DQ++++ +V      +          +      +     + 
Sbjct: 690 RPM-GRATAGVKGMRFREDDQLLALTVVQEDAYLFVATSGGYGKRTKMEEYPAKGRGGLG 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            +      +    +        ++  IL ++  G   RT     R ++R+  G+R  D+ 
Sbjct: 749 VVTFKY--DKKRGKLIGALTVQEDDEILAITSAGGVIRTEVNQIRHTSRATMGVRLVDLG 806

Query: 834 KINEIGALVAV 844
              +   LVAV
Sbjct: 807 ---KDVELVAV 814



 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 107/316 (33%), Gaps = 58/316 (18%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
             E++       VV  T  G  +R K+  +    R   G    +L   D +     C+  
Sbjct: 504 VSEEDLIARENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTH 563

Query: 694 NDILLTTKLGQCVRFPISAI---------------------------------------- 713
           + IL  T  G+  R     +                                        
Sbjct: 564 DTILFFTNFGRVYRLRAFELPEASRTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLV 623

Query: 714 ------RVFAGR-------NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                 RV   R        S G+  I+L +GD+++    +  A+ D        + M  
Sbjct: 624 LATSHGRVKKSRLTDYDSPRSGGLIAINLNEGDRLVGAQ-LCTAEDDLLLVSEEGQAMRF 682

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                        +            +     +  ++ ++   +  G+GKRT   ++   
Sbjct: 683 TADDEVLRPMGRATAGVKGMRFREDDQLLALTVVQEDAYLFVATSGGYGKRTKMEEYPAK 742

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R G G+      K  + G L+    V ++D+I+ ++  G +IR  VN+IR  SRAT GV
Sbjct: 743 GRGGLGVVTFKYDK--KRGKLIGALTVQEDDEILAITSAGGVIRTEVNQIRHTSRATMGV 800

Query: 881 VIFSTAKDERVVSVER 896
            +    KD  +V+V+R
Sbjct: 801 RLVDLGKDVELVAVDR 816



 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 831 DVSKINEIGALVAVFPVNDNDQI------ILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                     + A   V++ D I      + ++  G   R  V+  R   R  KGV    
Sbjct: 488 KFGDERRTKIVAASGDVSEEDLIARENVVVTITSTGYAKRTKVDSYRSQRRGGKGVRGAE 547

Query: 885 TAKDERV 891
             +D+ V
Sbjct: 548 LKQDDVV 554


>gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
 gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759]
          Length = 865

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/841 (40%), Positives = 508/841 (60%), Gaps = 38/841 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V +   M+ SY+ YA++VI  RA+PD+RDGLKPV RRIL  M+++    +K + KCARI
Sbjct: 12  EVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARI 71

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IY+AL ++AQ+W+ R  L++G GNFGSVDGD  AA RYTE RL K
Sbjct: 72  VGDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSK 131

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  ++ D+ KDTVDF PN+DG+ +EPVVL +RYPN+LVNG  GIAVGMATNIP HNL E
Sbjct: 132 ISMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKE 191

Query: 198 VVDGCVAVIDN-----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            +   + +IDN      + D+D LM+I++GPDFPTGA ILGR GI +AY TGRG I +R 
Sbjct: 192 TIYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQILGRQGINDAYRTGRGKIKVRA 251

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           ++ IE  +  + +I+VTE+PY VNK+ +++ + +LV+ KRI  I D+RDES R+G RVVI
Sbjct: 252 ITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           EL++  +A+VILNQL+++T LQ  F   M+AL    P+   L  +L  ++  +E+VV RR
Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDGVPKILNLKDMLTYYLKHQEDVVTRR 371

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y LNKA +RAH+L G  IA+ N+DEV+ IIR S N   A+ +L++R            
Sbjct: 372 TRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIER------------ 419

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AI+++RL  LTGL R+ I NE N L  +I E  +IL+
Sbjct: 420 --------------FGLSEAQAGAIVDMRLRALTGLEREKIENEYNELKAKIAEYKEILA 465

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             ++LLG+IK EL ++ D+    RRT I     D+ DE+ I RE++V++++ LGY+KR+P
Sbjct: 466 DENKLLGVIKTELTAIADKYGDERRTSITAYSDDITDEELIKREEIVISMTKLGYIKRMP 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              ++ Q RGGKG  G+ + D D + ++F+ +TH  ++FF+++G VY+ K + +P     
Sbjct: 526 KDTFKVQNRGGKGIKGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRN 585

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ARG A++N+L L   E++T I+P        +  Y++ ATK+G V++ K+  F  I ++G
Sbjct: 586 ARGVAIVNLLQLLPNEKVTAIIPITGF----DKKYLMMATKNGIVKKTKIEAFENIRKTG 641

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L+  DE++ V+  + ENDI L T  G C+RF    +R   GR S+GVRGI   K 
Sbjct: 642 LAAITLNDGDELIEVKATSGENDIFLVTTKGMCIRFNEDCVRD-TGRTSMGVRGIRCDKN 700

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+VI+M + +  D         M   +                     +     +    +
Sbjct: 701 DEVIAMQLDVQGDEILFVTANGMGKRTEL--SEFAPQMRGGKGVKCYRITEKTGDIVSAK 758

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  I+ ++ +G   R    D  +  R   G++  +V     + ++  +    + + 
Sbjct: 759 AVTNDHDIMMMTNEGIMIRMHCSDITVIGRITSGVKLMNVGSGAFVASVAKLARTEEEEN 818

Query: 853 I 853
           +
Sbjct: 819 V 819


>gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
 gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B]
          Length = 970

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/914 (36%), Positives = 488/914 (53%), Gaps = 76/914 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S +     +  VS+  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G  W
Sbjct: 65  SGDSIANELLPVSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVW 124

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +    K AR+ GEV+GK+HPHG++A Y  + RMAQD+S+R  LI GQGNFGS+DGD  AA
Sbjct: 125 SSPTKKAARVVGEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAA 184

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  +L DL +DTVDF PN+D S  EPVVL  R P +LVNG  GIAVGMA
Sbjct: 185 MRYTEVKLMKIAEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMA 244

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL E +D CV  +++PD  +D L+ +I  PDFPTG ++ G +G+   Y TGRG 
Sbjct: 245 TNIPPHNLRETIDACVHALEHPDCSVDDLIALISAPDFPTGGIVYGLSGVYEGYRTGRGR 304

Query: 248 IVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           +++R  +H+E+   D    +IVV EIPY VNK  + E++ EL R+K++  I+++RDES R
Sbjct: 305 VIMRARTHLEEFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTR 364

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           Q  R+ I+LK+GA  +V+LN L++ T +Q  F +NMVAL   +P    L  ++  F+  R
Sbjct: 365 Q-IRIAIDLKQGAMPEVVLNNLFKNTQMQESFGMNMVALVDGQPMLLNLKQMVVYFLEHR 423

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT + L K+R   H+L G AIA+AN+DE +R+IR +   E A++ LM R W   
Sbjct: 424 REVVTRRTIFRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLG 483

Query: 426 DIKDLIDLID-----------DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
              ++                D    +  DG  YL++VQ   IL + L RLTGL R+ I 
Sbjct: 484 FAAEITRRAAEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKIL 543

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR-TRIVEGLLDMEDEDCI 533
            +  +    I + +DIL    R+  IIK+ELL+ ++     RR T  +    +    D I
Sbjct: 544 ADYAATMERIFDLIDILHKPERVTAIIKEELLACREAYGDERRSTIDLSEDTNFNKRDLI 603

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            R DMVV+++  G+VK   L+ Y AQ RGGKGR+      +D +   F+ +TH  +L FS
Sbjct: 604 PRRDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFS 663

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G VY   V+ LP G   +RG+ ++N+L L + E+I+ I+P  E               
Sbjct: 664 TAGQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKISFILPIQEF-------------- 709

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
                                                +++  + L T  G   R P+SA 
Sbjct: 710 -------------------------------------SEDRYMFLATDRGTVRRTPLSAF 732

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
                    G+R  +L   ++++ + I    D      +         +           
Sbjct: 733 SSAR----RGIRATNLG-DEKLVGVTITSGDDD--VFLLADNGRCVHFKESTIRVMGRTA 785

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                  V+ + S           Q  L  +E GFGKRT+   + + NR GKG+ A  V 
Sbjct: 786 HGVRGMRVKADESVVALASTNDMTQAFLIATEHGFGKRTALAAYPLRNRGGKGVIAIRVI 845

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           + N  GA V+   V   D I+L+S  G ++R    E+    R T G ++     D+ + +
Sbjct: 846 EKN--GAPVSGVIVKPEDDIMLLSTGGKVVRTRAGEVPERGRNTVGNILIRM-PDDTLAA 902

Query: 894 VERIRESEIVDEAE 907
           V R+  +   DE+E
Sbjct: 903 VRRVDRTGEEDESE 916


>gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 704

 Score =  742 bits (1916), Expect = 0.0,   Method: Composition-based stats.
 Identities = 347/701 (49%), Positives = 480/701 (68%), Gaps = 12/701 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQ 546

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++
Sbjct: 547 GYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F
Sbjct: 607 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEF 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  +GK+A+KL   DE++ V+  + E++++L +  G+ V
Sbjct: 664 NRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVV 704



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 481 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 540

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 541 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 597

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            +  + V ++  A+R  +G   V +    +DER+ ++  + E E 
Sbjct: 598 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE 642



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 9/178 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
             TQE+ ++  +  G     P+S       R   G     + + D +  + +    D   
Sbjct: 533 LITQEDVVVTLSHQGYVKYQPLSEYEA-QRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 591

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   Y   +        G              +  I+         +   +   + 
Sbjct: 592 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 651

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
            G  K+T   +F     +GK   A  + +      L+ V   +  D+++L S +G ++
Sbjct: 652 NGTVKKTVLTEFNRLRTAGK--VAIKLVEG---DELIGVDLTSGEDEVMLFSAEGKVV 704



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 61/165 (36%), Gaps = 8/165 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   LS++    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 540 VVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRV 599

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
               +  +   A R + G   V  + L + +++ +  I+   + +   ++         +
Sbjct: 600 YSMKVYQL-PEATRGARGRPIVNLLPLEQDERITA--ILPVTEFEEGVKVFMATANGTVK 656

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           + +  +   + +    +       E    +L   E  ++  S +G
Sbjct: 657 KTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEG 701


>gi|227541341|ref|ZP_03971390.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182892|gb|EEI63864.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 861

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/832 (37%), Positives = 479/832 (57%), Gaps = 40/832 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SDE     ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   
Sbjct: 2   SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + +VK +R   + MG++HPHG++AIYD L R+AQ WS+R  +++GQGNFGS   D PAA
Sbjct: 62  ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC+L   A  ++ D+ +DTV+F+PNYDG   EP VL +R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL E+ +    +++NPD      L+A ME ++GPDFPT A+I+G  GIK+AY T
Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGSI +RGV+ IE+    R  IV+TE+PY VN   ++  IA+ +   ++   + + DE 
Sbjct: 242 GRGSIKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ LKR A   V+LN L+++++L+S F VNM+++    P    L  +L  + 
Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ LN A  RAH+L GL  A+  LDEV+ +IR S   E AR+ LM+   
Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E Q + IL+++L +L  L R  I +EL  L  
Sbjct: 418 -----------------------LLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEN 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   I++ EL  + D+    RRT++V    D+ DED I +E++VVT+
Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR  +  YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ + N+L    GE I  ++     E   +  Y+V AT+ G V++++L
Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYE---DEPYLVLATRKGRVKKSRL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           +D+     +G IA+ L+  D ++     + E+D+LL ++ GQ +RF  +   +R   GR 
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+     D+++SM +    D             +A     +     +        
Sbjct: 691 TAGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQ 750

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +           +  E  I+ ++  G   RT     R S+RS  G+R  ++
Sbjct: 751 PKRGKLIGALAVNEGDE--IMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNL 800



 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 74/170 (43%), Gaps = 8/170 (4%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +A + +  AD  + +   +           +  +    +  + +     +   ++L  +E
Sbjct: 449 LAELENTIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQE 508

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILV 856
             ++T++  G+ KRT    +R   R GKG+R  ++    ++  +V  F V + +D I+  
Sbjct: 509 NVVVTITSGGYAKRTKVDAYRSQKRGGKGVRGAEL----KMDDVVRHFFVCSTHDWILFF 564

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEIV 903
           ++ G + R+   EI  ASR  +G  + +  +    E +  V +I+  E  
Sbjct: 565 TNFGRVYRLKAYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYEDE 614



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 94/265 (35%), Gaps = 16/265 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  +V  +  G VK+  L+ Y + R  G     + + + D +    + S    +L
Sbjct: 609 QSYEDEPYLVLATRKGRVKKSRLTDYESSRSAG--LIAINLNEGDSLIGAVLSSGEDDLL 666

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  A +  +     +             + +  Y++ 
Sbjct: 667 LVSQRGQAMRFSAAD-DVLRPMGRATAGVKGMRFKDDDE------LLSMCVTSDGDYLLV 719

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT+ G  +R  + ++    R G     L     R +++      + ++I+  T  G  +R
Sbjct: 720 ATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGALAVNEGDEIMAITSAGGVIR 779

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S IR  + R+++GVR ++L  G   +S+  +     D  E                 
Sbjct: 780 TEVSQIRP-SSRSTMGVRLVNLPNG---VSLYAIDRNVEDSGEEQAEAIARGEVDGPAEK 835

Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792
           +  +  +       + +++    +E
Sbjct: 836 NPVQAQAQLEVDGSDTDMNGVPTEE 860


>gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8]
          Length = 852

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/844 (40%), Positives = 509/844 (60%), Gaps = 33/844 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++ ++   +VS+ DEM+NS+L YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K
Sbjct: 6   DDIDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIGVTPDK 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+VMGKYHPHG++AIY+A+ RMAQ +S R LL++G GNFGSVDGD  AA R
Sbjct: 66  PHKKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  +L D+ KDT+DF+ NY    +EPVVL AR+PN+LVNG  GIAVGMATN
Sbjct: 126 YTEARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D    ++ NPD+ +D LME++ GPDFPTGA+++G++GI+ AY TGRG I+
Sbjct: 186 IPPHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVMGKSGIRRAYQTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    IE+ + DRE+IVVTEIPY VNKA ++++IA+L R+KRI  I    DES R+G R
Sbjct: 246 VRSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDESGREGMR 305

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA V+LN LY+YT +Q  F  NM+A++   P+   L  IL  ++  + EV+
Sbjct: 306 IVIEVRRDTSASVVLNNLYKYTPMQVSFGFNMLAIDKGVPKILNLKEILSKYLDHQVEVI 365

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y   KA +RAH+L GL IA+ ++DE++ IIR S + + A++ELM R         
Sbjct: 366 RRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNR--------- 416

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+VQ +AIL++RL RLTGL RD I  E   L   I+   +
Sbjct: 417 -----------------YELSDVQAQAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTE 459

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL S+ R+  II+ EL  ++      RRT +    + D+EDE  I  ED+++ +++ GY+
Sbjct: 460 ILGSQERIFQIIEDELNEIRTRFGDARRTELHIGEITDIEDESLIEEEDVLIALTNKGYI 519

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+    +  Q RGG+G  G+ + D D +  L   STH ++LFF++ G VY+++ + +P 
Sbjct: 520 KRMTQDEFSVQNRGGRGVKGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPE 579

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN++ +++GE +  ++   + ++     Y+ F TK G V+R   S++  I
Sbjct: 580 YGRTAKGLPIINLIKIDKGEEVKAMISISDQDTDHE-KYLFFVTKTGTVKRTLSSEYYNI 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             +G IA+ L   D +++V        I++ T  G  + F  S +R   GR + GVRG+ 
Sbjct: 639 RNNGLIALNLKEDDSLVAVMETDGNKPIIIGTHEGNAISFLESDVRAM-GRTATGVRGVR 697

Query: 729 LAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L   D V+   I V  +D        Y K    ++  I           N S   G ++ 
Sbjct: 698 LRDDDYVVGADIMVEGSDVLVITDKGYGKRTPVEQYSIKNRGGLGVKTSNISEKSGKLAG 757

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               E     + IL ++ +G   R        S+R+  G+R   + +   + ++  +   
Sbjct: 758 LLVVE---GHEDILVMTNQGVAIRMKVEGISQSSRATLGVRMIRLDQEAVVSSITTILES 814

Query: 848 NDND 851
            ++D
Sbjct: 815 EEDD 818


>gi|227487629|ref|ZP_03917945.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227092447|gb|EEI27759.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 861

 Score =  741 bits (1914), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/832 (37%), Positives = 479/832 (57%), Gaps = 40/832 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SDE     ++ + + +EMQ+SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M   G   
Sbjct: 2   SDENLFDRVSPIDLNEEMQSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSGYRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + +VK +R   + MG++HPHG++AIYD L R+AQ WS+R  +++GQGNFGS   D PAA
Sbjct: 62  ERGFVKSSRPVADTMGQFHPHGDSAIYDTLVRLAQPWSMRYPMVQGQGNFGSRGNDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTEC+L   A  ++ D+ +DTV+F+PNYDG   EP VL +R PN+L+NG  GIAVGMA
Sbjct: 122 MRYTECKLTPLAMEMVRDIREDTVEFQPNYDGKTAEPTVLPSRVPNLLMNGSNGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           TNIP HNL E+ +    +++NPD      L+A ME ++GPDFPT A+I+G  GIK+AY T
Sbjct: 182 TNIPPHNLNELAEAIYWILENPDASDKETLEACMERVKGPDFPTAALIVGDQGIKDAYTT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE- 302
           GRGS+ +RGV+ IE+    R  IV+TE+PY VN   ++  IA+ +   ++   + + DE 
Sbjct: 242 GRGSVKMRGVTSIEEEK-GRTYIVITELPYMVNPDNLVSNIADQINNGKLPGASKIDDES 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+V+ LKR A   V+LN L+++++L+S F VNM+++    P    L  +L  + 
Sbjct: 301 SDRVGMRIVVTLKRDAVPRVVLNNLFKHSALESNFGVNMLSIVDGVPRTLRLDQMLTLYT 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + +V+VRRTK+ LN A  RAH+L GL  A+  LDEV+ +IR S   E AR+ LM+   
Sbjct: 361 DHQVDVIVRRTKFRLNAAEKRAHILRGLVKALDALDEVIALIRASATVEVARQGLME--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                   + + E Q + IL+++L +L  L R  I +EL  L  
Sbjct: 418 -----------------------LLDVDEEQAQHILDMQLRKLAALERQKIIDELAELEE 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I +  DIL+   R   I++ EL  + D+    RRT++V    D+ DED I +E++VVT+
Sbjct: 455 TIADLKDILAKPERQRKIVEDELREIVDKHGDERRTQLVAATGDVTDEDLIAQENVVVTI 514

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  GY KR  +  YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K
Sbjct: 515 TSGGYAKRTKVDAYRSQKRGGKGVRGAELKMDDVVRHFFVCSTHDWILFFTNFGRVYRLK 574

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + +P  S  ARG+ + N+L    GE I  ++     E   +  Y+V AT+ G V++++L
Sbjct: 575 AYEIPEASRTARGQHVANLLEFQPGETIAQVIQIQSYE---DEPYLVLATRKGRVKKSRL 631

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
           +D+     +G IA+ L+  D ++     + E+D+LL ++ GQ +RF  +   +R   GR 
Sbjct: 632 TDYESSRSAGLIAINLNEGDSLIGAVLSSGEDDLLLVSQRGQAMRFSAADDVLRPM-GRA 690

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+G+     D+++SM +    D             +A     +     +        
Sbjct: 691 TAGVKGMRFKDDDELLSMCVTSDGDYLLVATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQ 750

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            +           +  E  I+ ++  G   RT     R S+RS  G+R  ++
Sbjct: 751 PKRGKLIGALAVNEGDE--IMAITSAGGVIRTEVSQIRPSSRSTMGVRLVNL 800



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 94/265 (35%), Gaps = 16/265 (6%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E  +V  +  G VK+  L+ Y + R  G     + + + D +    + S    +L
Sbjct: 609 QSYEDEPYLVLATRKGRVKKSRLTDYESSRSAG--LIAINLNEGDSLIGAVLSSGEDDLL 666

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  A +  +     +             + +  Y++ 
Sbjct: 667 LVSQRGQAMRFSAAD-DVLRPMGRATAGVKGMRFKDDDE------LLSMCVTSDGDYLLV 719

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT+ G  +R  + ++    R G     L     R +++      + ++I+  T  G  +R
Sbjct: 720 ATEGGYGKRTAMEEYPAKGRGGLGVTTLKYQPKRGKLIGALAVNEGDEIMAITSAGGVIR 779

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +S IR  + R+++GVR ++L  G   +S+  +     D  E                 
Sbjct: 780 TEVSQIRP-SSRSTMGVRLVNLPNG---VSLYAIDRNVEDSGEEQAEAIARGEVDGPAEK 835

Query: 768 DTEEITSLKNDSSVEGNISEERCQE 792
           +  +  +       + +++    +E
Sbjct: 836 NPVQAQAQLEVDGSDTDMNGVPTEE 860


>gi|293977753|ref|YP_003543183.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
 gi|292667684|gb|ADE35319.1| DNA gyrase, A subunit [Candidatus Sulcia muelleri DMIN]
          Length = 816

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/899 (35%), Positives = 514/899 (57%), Gaps = 103/899 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + + S++I +EM++SY+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G   +K Y
Sbjct: 3   ENEKMISINIENEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALNHKHY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR +LI+GQGNFGS+D DPPAA RYT
Sbjct: 63  KKSARIVGIVLGKYHPHGDSSVYDAIVRMAQSWSLRYILIDGQGNFGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+P
Sbjct: 123 EIKLKKISEDMLMDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E ++   + IDN +I ++ LM+ I+ PDFPTG +I G  G+K A+ TGRG I++R
Sbjct: 183 PHNIVESIEAICSYIDNKNITIEELMKYIKAPDFPTGGIIYGYEGVKEAFLTGRGKILLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H EK    R  I++ EIPYQ+ KA  + K  ELV+E R+  +  +RDESDR G R+V
Sbjct: 243 SKVHFEKIKF-RTCIIIDEIPYQIKKAEFINKTLELVKEGRLEGLYSIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LK+  +  ++LN L++ T L++ FSVN +AL   KP +  L  ++K FV  R  V++R
Sbjct: 302 FFLKKNVNKQLLLNNLFKETYLETSFSVNNIALVNGKPTKLNLKYLIKHFVNHRHNVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY LNKA+ RAH++ G  + + +L+ V+ +I+ S + E A+ +L+ +           
Sbjct: 362 RTKYDLNKAKYRAHIIEGFFLVLEHLESVIELIKSSKDRENAKIKLLNK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q ++ILEL+L  LT L  + I+ E   L  +I     IL
Sbjct: 411 ---------------YKLSEIQVQSILELKLNSLTKLESEKIKEEFIKLNKKIYSYKRIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           + +     IIK+EL  +K++    RRT I    L+   E     + +V+T S+ GY+KR 
Sbjct: 456 NDKFLQKKIIKKELKIIKEKYGDSRRTEIDYLGLETSLE---PNKQVVLTTSYDGYMKRT 512

Query: 552 PLSVYRAQRR--GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            L+ Y+ ++   GG    G     +DF+  + + +TH  +LFF+  G  +  +V+ +P G
Sbjct: 513 DLNEYKIKKIGVGGIVNMGAYKLKKDFIKHIIVANTHQYMLFFTEKGKCFWLRVFEIPEG 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDE--SSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              ++G+A+ N++ +++ ++I + +   +       NN YV+  TK G +++  L  + +
Sbjct: 573 YKTSKGRAIQNLIKIDKKDKICSSILIKDFFNKYYINNHYVIMITKSGIIKKTTLEQYSK 632

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N++G  A+K+   D ++  +    +++IL+  K G+ +RF  S +R    R ++GV+ I
Sbjct: 633 PNKNGINAIKIKKGDALIDAKLTNGKSEILIAVKSGKAIRFYESTVRPMT-RITLGVKSI 691

Query: 728 SLAK---GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +L+K    D+VI M  +                                           
Sbjct: 692 TLSKLLSKDKVIGMICINDP---------------------------------------- 711

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      K+++IL +SE GF K ++   +R ++     ++  +++  ++ G LVA+
Sbjct: 712 -----------KKEYILVISENGFVKISNLSHYRKTD-----LKTINIT--SKTGCLVAI 753

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT-----KGVVIFSTAKDERVVSVERIR 898
             V + D II+++  G  +R+PV EI +  RAT     KG+ + +     ++ SV ++ 
Sbjct: 754 KNVVNKDDIIIINQSGLTLRIPVTEIIVRVRATKGNKGKGIKLINLKS--KIASVAKVD 810


>gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
 gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo]
          Length = 810

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/888 (34%), Positives = 492/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ + A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V++H  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEI---LTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V                                               
Sbjct: 695 LKEGDLFVKVLAVRE--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 710 --------NPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ ++SV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD++     V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIAIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 SHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710



 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
                VN +D + ++S++G L  +   E            I                   
Sbjct: 548 AIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
 gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116]
          Length = 810

 Score =  741 bits (1913), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/888 (33%), Positives = 495/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+PNYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + D++ I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+D+AHVL GL IA+ N+DE+++II+ S   + A+  L+            
Sbjct: 365 RRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    + +E N L   IK+  +I
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDREEI---LTIKNSKDFTDDAYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICISKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V                                               
Sbjct: 695 LKEGDLFVKVLAVRE--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 710 --------NPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +ND+I+LVS +   +R    ++    +  +G+ +     ++ ++SV +
Sbjct: 761 ENDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807



 Score = 88.7 bits (218), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +      I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIKNSKDFTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICISK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 99/290 (34%), Gaps = 78/290 (26%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + L++ DEI+ +   ++   +    K      F +S I+      +  V  + L      
Sbjct: 386 IALNNIDEIIKIIKSSK---LAKDAKERLVANFGLSEIQ------ANSVLDMKLQKLTAL 436

Query: 731 -----KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                + +  + ++++   +         +  +  +   +     +    K     E  +
Sbjct: 437 EIFKLEDEFNVLLSLIKDYENILLNPARIINIIREETINLGLKFGDERRTKIIYDEE--V 494

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +V   
Sbjct: 495 LKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIAL 551

Query: 846 PVNDNDQIILVSDKGTLIRVPVNE----------------IRIASR-------------- 875
            VN +D + ++S++G L  +   E                I +  R              
Sbjct: 552 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDREEILTIKNSKDFTD 611

Query: 876 ------------------------ATKGVVIFSTAKDERVVSVERIRESE 901
                                    ++GV++      + V S E + + E
Sbjct: 612 DAYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
 gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1]
          Length = 810

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/888 (33%), Positives = 492/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++ + A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS++I
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLVKAYKTGKGSVII 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V++H  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEI---LTIKNSKDFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  V                                               
Sbjct: 695 LKEGDLFVKVLAVRE--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 710 --------NPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ ++SV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLISVSK 807



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD++     V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIAIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 SHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDSY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAVREN 710



 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
                VN +D + ++S++G L  +   E            I                   
Sbjct: 548 AIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054]
          Length = 867

 Score =  741 bits (1912), Expect = 0.0,   Method: Composition-based stats.
 Identities = 327/875 (37%), Positives = 490/875 (56%), Gaps = 60/875 (6%)

Query: 1   MTEHIISSDEEEEK----------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +       E+ +           +  + +  EMQ SYL YA++VI+ RA+P++RDGLK
Sbjct: 1   MVDDNRPDGGEQPEDSTTPAQAGNRVELIELETEMQRSYLDYAMSVIVSRALPEVRDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+ M   G    K Y KCAR+ G+VMG YHPHG+ +IYD L R+AQ WS+R+ L
Sbjct: 61  PVHRRVLYAMYDGGYRPEKGYYKCARVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++G GNFGS   DP AA RYTEC++   A  ++ D+ ++TVDF  NYDG  QEP VL +R
Sbjct: 121 VDGNGNFGSPGNDPAAAMRYTECKMMPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSR 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFP 226
            PN+LVNG  GIAVGMATNIP HNL EV  G +  +++P    + L+    E I+GPDFP
Sbjct: 181 IPNLLVNGATGIAVGMATNIPPHNLREVASGALWALEHPGASNEELLEALVERIKGPDFP 240

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           TGA+I+GR GI++AY TGRGSI +R V  +E+    R+ +V+TE+P+QVN   +  KIA+
Sbjct: 241 TGALIVGRRGIEDAYRTGRGSITMRAVVEVEEIQ-GRQCLVITELPFQVNPDNLALKIAD 299

Query: 287 LVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           LV++ RI  IAD+RDE S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL 
Sbjct: 300 LVKDGRIAGIADVRDESSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALV 359

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P   +L   ++ +VA + EV+VRRT + L KA +RAH+L  L  A+  +D V+ +IR
Sbjct: 360 DGVPRTLSLDAFIRHWVAHQIEVIVRRTTFRLRKAEERAHILRALLKALDQIDAVIALIR 419

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S + + AR  LM                            + + E+Q  AILE++L RL
Sbjct: 420 ASESADAARTGLM--------------------------RLLDIDELQANAILEMQLRRL 453

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L    I +E + L  +I E   IL+S +R   I+ +EL ++ ++    RR+ ++    
Sbjct: 454 AALESARILSEHDELQAKINEYNAILASPARQREIVSEELTAIVEKYGDERRSTLIPSDG 513

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D+  ED I  ED+VVT++  GYVKR    +YR+Q+RGGKG  G  ++ +D V   F+ +T
Sbjct: 514 DLSIEDLIAEEDIVVTITRGGYVKRTRSDLYRSQKRGGKGVRGAQLKQDDIVDHFFVTTT 573

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           H  +LFF++ G VY+ K + LP     ARG+ + N+L+    E IT +M     E   + 
Sbjct: 574 HNWILFFTNKGRVYRAKGYELPDAGRDARGQHVANLLAFQPEEHITQVMAVRTYE---DK 630

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTT 700
            Y+V AT+ G V++  L D+      G IA+ L        DE++  E  + ++D+LL +
Sbjct: 631 PYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQDEEGQGDELIGAELVSADDDLLLIS 690

Query: 701 KLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD-ADYDERICYMKH 757
           +  Q +RF  +   +R  + R + GV+G++  + D+++SM +V             Y K 
Sbjct: 691 RKAQSIRFKATDEALRPMS-RATSGVKGMAFREDDELLSMNVVRPGTYVFTATDGGYAKR 749

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            S     + G               G++      E   +   I+ ++  G   RT   + 
Sbjct: 750 TSVDEYRVQGRGGFGIKAAKIVEGRGSLVGALVVEESDE---IMAITLSGGVIRTRVSEV 806

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           R + R   G++  ++ K     A+V +    + D+
Sbjct: 807 RETGRDTMGVQLINLGKR---DAVVGMARNAEADE 838



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 92/248 (37%), Gaps = 14/248 (5%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTS 588
               +  +V  +  G VK+ PL  Y + R GG     +   +E    +L           
Sbjct: 626 TYEDKPYLVLATRGGLVKKTPLKDYDSPRSGGLIAINLRQDEEGQGDELIGAELVSADDD 685

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L  S      + K     +  P +R  + +  ++  + + + ++             YV
Sbjct: 686 LLLISRKAQSIRFKATDEAL-RPMSRATSGVKGMAFREDDELLSMNVVR------PGTYV 738

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQC 705
             AT  G  +R  + ++    R   G  A K+      ++      + ++I+  T  G  
Sbjct: 739 FTATDGGYAKRTSVDEYRVQGRGGFGIKAAKIVEGRGSLVGALVVEESDEIMAITLSGGV 798

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R  +S +R   GR+++GV+ I+L K D V+ MA    AD +        +  SA     
Sbjct: 799 IRTRVSEVRE-TGRDTMGVQLINLGKRDAVVGMARNAEADEEEGADDTVDETESAAAATE 857

Query: 766 SGDTEEIT 773
              T    
Sbjct: 858 QDATGTPD 865


>gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH]
 gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH]
          Length = 810

 Score =  740 bits (1911), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/889 (34%), Positives = 491/889 (55%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 4   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 64  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  L+ D+ K TVDFR NYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 124 YTEARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D  V ++D+  + +  L+EI++GPDFPT A I+    +  AY TG+GS+V
Sbjct: 184 MAPHNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYNESLIKAYTTGKGSVV 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+   D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 244 IRARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++ AF+  R+E+V
Sbjct: 304 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISAFIEHRKEIV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +AR++AH+L GL IA+ N+D V+ IIRF+   + A+  +++          
Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKE--------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT +  + +  E   L   IK+  D
Sbjct: 415 -----------------FNLSEIQANSILDMKLQKLTSIETEKLEEEFKILLALIKDYED 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL+S  R++ I+++E++++  +    RRT+I+           D + RE+++V ++  G+
Sbjct: 458 ILNSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+    Y+ Q  GGKG     ++D D V     V+TH  +   S+ G +Y    + + 
Sbjct: 518 IKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIK 577

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  ++G+ +  +++L + E I   +          + Y++  T +G + R +   F  
Sbjct: 578 DTSRTSKGQNVRELINLGETEEI---LAIKNCNELSVDNYLLITTANGKIARIETEGFKT 634

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I +KLD  D + S E  ++   I+  +K G    F    IR    R + GV G+
Sbjct: 635 VKARGVIVIKLDDNDFVTSAEIVSKNEKIICISKKGNAFAFNSDNIR-LTHRGTQGVSGM 693

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I    V                                              
Sbjct: 694 KVREGDVLIKALAVKQG------------------------------------------- 710

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VSE G+GKR          R   G      S   + G +V    V
Sbjct: 711 ----------SHLLVVSENGYGKRLEISKVTDLKRGATGYTCYKKSD-EKAGEVVDAITV 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             +D+I+LVS    ++R  V++I    +  +G+ + S  + ++++SV +
Sbjct: 760 VQDDEILLVSKGAKVLRTLVDKISEQGKDARGMQVLSLDE-DKLISVSK 807



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 73/227 (32%), Gaps = 58/227 (25%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +  +++   I  + D                  L     +E    +     +  + +
Sbjct: 440 KLEEEFKILLALIKDYEDILNSPERVVNIVREEIINLSLKFGDER---RTKIIYDEEVLK 496

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN----------- 836
               +L  +E  I+ ++++GF KR    ++++    GKG+ + D+   +           
Sbjct: 497 TSMSDLMQRENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDRDQVNITLCVNTH 556

Query: 837 ---------------------------------------EIGALVAVFPVND---NDQII 854
                                                  E   ++A+   N+   ++ ++
Sbjct: 557 DFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGETEEILAIKNCNELSVDNYLL 616

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           + +  G + R+     +      +GV++     ++ V S E + ++E
Sbjct: 617 ITTANGKIARIETEGFKTVK--ARGVIVIKLDDNDFVTSAEIVSKNE 661


>gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8]
 gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8]
          Length = 829

 Score =  740 bits (1909), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/852 (36%), Positives = 483/852 (56%), Gaps = 41/852 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT  +  +   E      +SI  EM+ S++ YA++VI+ RAIPD+RDGLKPVHRR L+ M
Sbjct: 1   MTSEVPPAGTPETHKTEPISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG   +K   K AR+ G+VMGKYHPHG+A+IYD + +MAQ +S R  L++GQGNFGSV
Sbjct: 61  WDMGNTSDKPTKKSARVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL+DL K+TV+F PNYD S +EP VL ++ PN+LVNG  
Sbjct: 121 DGDAAAASRYTEVRLFPYAEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTD 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT +P HNL EV       +D P + ++ L++I+ GPDFPTG +++G  G+KN 
Sbjct: 181 GIAVGMATKMPPHNLREVCAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILMGVDGVKNI 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDR--EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           YATG+G IV+RGV+ IE++ G    ++I+VTE+PYQVNKA  +  IA++V++K++  I+D
Sbjct: 241 YATGQGRIVVRGVAEIEESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISD 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +RDESD+ G RVV EL++G  + VILN LYR+T+L+S FS   +A+    P+   L  +L
Sbjct: 301 IRDESDKDGIRVVFELRKGTISAVILNNLYRFTALESGFSAYNLAIVDGTPKLLNLPALL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R EV+ RR+++ L K ++R H+L GL  A+A++D+++  IR S   + AR    
Sbjct: 361 GNFVHHRIEVIRRRSEFDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNAR---- 416

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                 I       L E+Q  AIL+++L RL  L +  I +E +
Sbjct: 417 ----------------------IALISGFGLDELQANAILQMQLRRLAALEQQKIVDEKS 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           +L  EI +   IL+S   +   I++E   +  +    RRT I     D+  ED I  + +
Sbjct: 455 TLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLSTEDLIEDKTV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V+++   Y+KR+ L  YR QRRGG G +G+  +++D V+ +F       +L F+++G V
Sbjct: 515 LVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDVVSSVFAAGMKDYLLCFTNIGRV 574

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV+++P  S  A+GK ++N+L+L     +TT++P  E      + Y++FAT+ G V 
Sbjct: 575 YWLKVYQIPESSRIAKGKPIVNLLNLKDEV-VTTVIPIREFR---KDRYLLFATQLGQVI 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           +    +F     +G  A++L   D+++ V T     +++L+T+ G  +RF    +R   G
Sbjct: 631 KIPQDEFSFPRSTGTNAIRLRENDKLVDVITTDNTKEVVLSTRFGYGLRFHEDTVR-IVG 689

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + GV G+ L   D ++++ +V            + K          G           
Sbjct: 690 RGASGVIGMRLRGNDTIVALTLVEKDHLLSITDAGFGKRTEFDDFRGHGRATMGV----- 744

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            +++                 I  ++  G   RTS    RI+ R  KG++   + + ++ 
Sbjct: 745 KNMQVERDVVIHSRAVADTDEIFVMTASGVVIRTSVNSIRITGRGAKGVKIMRLDEKDK- 803

Query: 839 GALVAVFPVNDN 850
             ++ V  V   
Sbjct: 804 --VIGVAIVTPE 813



 Score = 78.7 bits (192), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 66/173 (38%), Gaps = 8/173 (4%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +  +++     L A+    E I   +               +       +     + +  
Sbjct: 445 EQQKIVDEKSTLEAEILKLETILASEENIKDEIRRETSEIALKFGDARRTEITLDASDLS 504

Query: 791 QELKLKEQFILT-VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            E  ++++ +L  ++   + KR     +R   R G GI      + +    + +VF    
Sbjct: 505 TEDLIEDKTVLVSITTANYIKRMDLDTYRKQRRGGHGITGMTTKEDDV---VSSVFAAGM 561

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
            D ++  ++ G +  + V +I  +SR  KG   V + +  KDE V +V  IRE
Sbjct: 562 KDYLLCFTNIGRVYWLKVYQIPESSRIAKGKPIVNLLNL-KDEVVTTVIPIRE 613


>gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
 gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly]
          Length = 815

 Score =  739 bits (1907), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/889 (34%), Positives = 495/889 (55%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ K TV+F+PNYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV D  + ++++ D+ +  L+ II+GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+ S D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+ ++
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS   + AR  +M           
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIM----------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L    I  +   +   IK+  D
Sbjct: 418 ---------------REFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL S SR++ +I++E++++  +    RRT+I+           D + RE+++V ++  G+
Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV    Y+ Q  GGKG     ++D D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG+ +  +++L + E I   +          + Y++  T +G + R +   F  
Sbjct: 583 DSSRTSRGQNIRELINLGEKEEI---LAIKNCSELSVDNYLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I MKLD +D + S E  ++++ I+  +K G    F  + IR    R + GV G+
Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I    +                                              
Sbjct: 699 KVREGDMLIKALAIK--------------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   +   +L +SE G+GKR          R   G      S   + G +V    V
Sbjct: 714 --------QGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD-EKAGEVVDAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +D+I+L+S    ++R  V++I    +  +G+ + S  + +++V+V +
Sbjct: 765 SQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVSK 812



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 60/228 (26%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +  QV+   I    D +             +  +I+   +     +     +  + +
Sbjct: 445 KIEEDFQVVLALI---KDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLK 501

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +L  +E  I+ ++++GF KR    ++++    GKG+ + D+        +     V
Sbjct: 502 TSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQD---SDQVNVALCV 558

Query: 848 NDNDQIILVSDKGTLIRVPVNEI---RIASRA---------------------------- 876
           N +D ++++S++G L  +    I      SR                             
Sbjct: 559 NTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDN 618

Query: 877 -----------------------TKGVVIFSTAKDERVVSVERIRESE 901
                                  ++GV+I      + V S E +   +
Sbjct: 619 YLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVSRDD 666


>gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
 gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S]
          Length = 810

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/888 (33%), Positives = 492/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K A +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  ++VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RAKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV+++I+ S   + A+  L+            
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKDAKERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++  ++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGAQEEI---LTIKNSKDFTDDACLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                                               
Sbjct: 695 LKEGDLFVKVLALRE--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 710 --------NPYLLIISENGYGKRLSVSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +GV +     ++ ++SV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGVQVLFLD-NDNLISVSK 807



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    +  
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFTDDAC 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  +RE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLALREN 710



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 102/291 (35%), Gaps = 80/291 (27%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK---- 731
           + L++ DE++ V   ++   +    K      F +S I+      +  V  + L K    
Sbjct: 386 IALNNIDEVIKVIKLSK---LSKDAKERLVANFGLSEIQ------ANSVLDMKLQKLTAL 436

Query: 732 -----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGN 784
                 +++    ++L    DY++ +     +    R  + +       +  + +  +  
Sbjct: 437 EIFKLEEEL---NVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEE 493

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +V  
Sbjct: 494 VLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIA 550

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNE------------IRIA------------------- 873
             VN +D + ++S++G L  +   E            I                      
Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGAQEEILTIKNSKDFT 610

Query: 874 -----------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                       +  +            GV++      + V S E + + E
Sbjct: 611 DDACLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
 gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470]
          Length = 815

 Score =  738 bits (1904), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/845 (38%), Positives = 487/845 (57%), Gaps = 42/845 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I +  +  +M+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y
Sbjct: 4   KEGKIVNTPLERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+V+GKYHPHG+ A+YD+  RMAQD+S+R  L++G GNFGS+DGD  AA RYT
Sbjct: 64  KKSARIVGDVLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K    +L D+ KDTVDF PNYDGS  EP+VL +R PN+LVNG  GIAVGMATN+P
Sbjct: 124 EMRMAKITLEMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G  A+IDNP+I +D LM+ I+GPDFPT A+I G  GI++ Y TGRGSI +R
Sbjct: 184 PHNLAEVVNGLCAMIDNPEITIDELMKYIKGPDFPTAAIIQGHKGIEDTYRTGRGSITVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               IE+    + +I+VTE+PYQVNKA ++E IA+L R+K I  I  LRDESDR G R+V
Sbjct: 244 ARVDIEEMERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL+   +  ++LN LY++T +Q  F   M+AL    P    L  IL  ++  +EEV+ R
Sbjct: 304 IELRSDVNPQIMLNNLYKHTQMQVNFGSIMLALVDGHPRILNLKQILYYYLKHQEEVITR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA  +AH+L GL IA+ ++DEV+R IR S   E A+  L+ +           
Sbjct: 364 RSRYELEKAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISK----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q  AIL++RL RLTGL RD I  +   +   I    D+L
Sbjct: 413 ---------------FGLSEKQAVAILDMRLRRLTGLERDKIEADYKDVQETIAYLRDLL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SSR +++G++K EL   K+     RRT I   L DM+  D I  + M +T++   Y+KR+
Sbjct: 458 SSREKIMGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITLTKQNYIKRI 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S  R Q++GG+G SG+ M+D D+V  +   STH  +LFF++ G VY +  + +P  S 
Sbjct: 518 DSSDLRTQKKGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSR 577

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            ARG A+IN ++ + G           D S     Y++  TK+G +++  L ++  IN++
Sbjct: 578 TARGSAMINFIT-SLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKN 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISL 729
           G IAM+L   D +++V       +I++ T+ G  +RF I    +R  + R++ GV G+ L
Sbjct: 637 GLIAMRLKDEDRLVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLS-RSASGVHGMRL 695

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +          +       E+  +        +  +     +       ++      E 
Sbjct: 696 KE-------GDDVVGVVVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFKKGYEV 748

Query: 790 CQELKLKEQFILT-VSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGALVAVFPV 847
              +   ++  L  +SE+G   R  +        + G+G+    + + +    + ++  V
Sbjct: 749 VALVAADDRDELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDR---IASIDVV 805

Query: 848 NDNDQ 852
           ++ ++
Sbjct: 806 SEPEE 810



 Score =  102 bits (253), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/240 (20%), Positives = 87/240 (36%), Gaps = 14/240 (5%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+     +        +  +     D  ++     +   I L TK     R   S +
Sbjct: 464 MGVVKAELTDEKNNFGDKRRTEIAAALGDMDVTDLIPDKPMTITL-TKQNYIKRIDSSDL 522

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTE 770
           R    +   GV G+ +  GD V  +      D      ++   YMK              
Sbjct: 523 RTQK-KGGRGVSGLKMKDGDYVRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARG 581

Query: 771 EITSLKNDSSVEGNISEERCQELKLKE--QFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                   S        E       +E  +++L V++ G+ K+T+  ++   N +  G+ 
Sbjct: 582 SAMINFITSLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEY--KNINKNGLI 639

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTA 886
           A  +   +    LVAV PV  N++II+ + KG  IR  +++  +R  SR+  GV      
Sbjct: 640 AMRLKDEDR---LVAVLPVKGNEEIIMGTRKGMAIRFSIDDDNVRPLSRSASGVHGMRLK 696



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 94/237 (39%), Gaps = 13/237 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMV---VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           T +       E  D  + E+     + V+  GY+K+  L  Y+   + G     + ++DE
Sbjct: 589 TSLGADEHVTELLDLDISEEGTKYLLMVTKYGYIKKTALEEYKNINKNG--LIAMRLKDE 646

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +  +  V  +  ++  +  G   +  +       P +R  + ++ + L +G+ +    
Sbjct: 647 DRLVAVLPVKGNEEIIMGTRKGMAIRFSIDD-DNVRPLSRSASGVHGMRLKEGDDVVG-- 703

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
                        +   +  GN +RN  S +    R+G+  +      E++++      +
Sbjct: 704 -----VVVAAEKDIFTISADGNAKRNAASAYRLQGRNGQGTINFKKGYEVVALVAADDRD 758

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           +++  ++ G  +R P   I     +   GV    L +GD++ S+ +V   + D +  
Sbjct: 759 ELVGISEQGITIRIPADQISSKKAKGGQGVILQRLEEGDRIASIDVVSEPEEDEENS 815


>gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
 gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1]
          Length = 815

 Score =  737 bits (1903), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/889 (34%), Positives = 495/889 (55%), Gaps = 87/889 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ + ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG++ +K
Sbjct: 9   ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ K TV+F+PNYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV D  + ++++ D+ +  L+ II+GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+ S D   I++T+IPY VNK+++L KIA L++E+++  ++D+RDESDR+G R
Sbjct: 249 IRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+ ++
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRRNFSINNLALVNGIPKQLNLRELISEFIEHRKNIL 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L +A+++AH+L GL IA+ N+D V+ IIRFS   + AR  +M           
Sbjct: 369 RRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIM----------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L    I  +   +   IK+  D
Sbjct: 418 ---------------REFQLSEIQANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL S SR++ +I++E++++  +    RRT+I+           D + RE+++V ++  G+
Sbjct: 463 ILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRV    Y+ Q  GGKG     ++D D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG+ +  +++L + E I   +          + Y++  T +G + R +   F  
Sbjct: 583 DSSRISRGQNIRELINLGEKEEI---LAIKNCSELSVDNYLLITTANGKIARIETEGFKT 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           +   G I MKLD +D + S E  ++++ I+  +K G    F  + IR    R + GV G+
Sbjct: 640 VKSRGVIIMKLDDKDFVTSAEIVSRDDKIICISKKGNAFAFSSNDIR-LTHRGTQGVSGM 698

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +GD +I    +                                              
Sbjct: 699 KVREGDMLIKALAIK--------------------------------------------- 713

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   +   +L +SE G+GKR          R   G      S   + G +V    V
Sbjct: 714 --------QGSHLLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSD-EKAGEVVDAITV 764

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +D+I+L+S    ++R  V++I    +  +G+ + S  + +++V+V +
Sbjct: 765 SQDDEILLISKSSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLVAVSK 812



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 60/228 (26%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            + +  QV+   I    D +             +  +I+   +     +     +  + +
Sbjct: 445 KIEEDFQVVLALI---KDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVLK 501

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +L  +E  I+ ++++GF KR    ++++    GKG+ + D+        +     V
Sbjct: 502 TSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQD---SDQVNVALCV 558

Query: 848 NDNDQIILVSDKGTLIRVPVNEI---RIASRA---------------------------- 876
           N +D ++++S++G L  +    I      SR                             
Sbjct: 559 NTHDFLLMISNEGKLYVINAYGIKDSSRISRGQNIRELINLGEKEEILAIKNCSELSVDN 618

Query: 877 -----------------------TKGVVIFSTAKDERVVSVERIRESE 901
                                  ++GV+I      + V S E +   +
Sbjct: 619 YLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVSRDD 666


>gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum]
          Length = 793

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/883 (34%), Positives = 482/883 (54%), Gaps = 92/883 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              ++  E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV  +K Y KCAR
Sbjct: 2   EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GE MGKYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL 
Sbjct: 62  IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 121

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  ++DD+ ++TV FR N+DG+  EP  L ++ PN+L+NG  GIAVGMATN+  HNL 
Sbjct: 122 QIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLT 181

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ D  +  +D+ D  +D L++ ++GPDFP G ++     +  AY TGRG ++++G    
Sbjct: 182 EICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQGEVDA 241

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +      ++++  IPY VNKA +++ IA+L + + I DI D++DESDR G  +VI+++ 
Sbjct: 242 TEDR----RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVRD 297

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
                ++LNQLY +T+L+S   +  + L G +P+   L  ++ +F+  R +V++RR+++ 
Sbjct: 298 DDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFR 357

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L + ++R  VL G+  AV ++D VV I++ S + + A                       
Sbjct: 358 LERKKERLDVLTGILTAVEHIDRVVEILKSSKDADEA----------------------- 394

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
              +        L++ Q +AILE+RL RL    +  +R+E+  L  EIK+  +I+ S  R
Sbjct: 395 ---SSKLRNEFDLNDRQIKAILEMRLQRLVNTEQASVRSEIAQLQTEIKDLEEIILSEDR 451

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +   K+E+  ++ +    RR+RI    + +   ED I  E+ ++ +S+ G VKRV    
Sbjct: 452 RIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADE 511

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG     M+  D +  +    +H +V +F++ G V+K K + +P  S  + G
Sbjct: 512 YRSQRRGGKGV-NTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLG 570

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            +    L L QGER+T IM            Y++  T+ G+V++           SG   
Sbjct: 571 VSAAAFLKLAQGERVTEIMK----APPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKI 626

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  DE++SV     + +I + +  G+   F  S IR   GR S+GVR + L +GD +
Sbjct: 627 ITLEDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTI 685

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  +V   +                                                  
Sbjct: 686 LTAFVVNSDED------------------------------------------------- 696

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               IL++SEKG+GKRT+  +F I +R   G+     ++    G +    PV D D++IL
Sbjct: 697 ----ILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTER--TGRVSHAIPVRDEDEVIL 750

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           VS     IR+  +EI   SR T GV +     D+RV++   I+
Sbjct: 751 VSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 793



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 80/231 (34%), Gaps = 11/231 (4%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAKGDQ 734
           +K     E    +    E  +++ +  G   R      R    R   GV   +  +  D 
Sbjct: 475 IKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRS-QRRGGKGVNTSMKTS--DS 531

Query: 735 VISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           + SM           +       K  + +    S  +  +++       +G    E  + 
Sbjct: 532 IKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKA 591

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              K  +++ V+  G  K+T++    + +    G++   +    +   LV+V     +  
Sbjct: 592 PPEKGYYLILVTRDGSVKKTAAD--PVFDSKSSGLKIITL---EDDDELVSVSYTAGDKN 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           I ++S KG       +EIR   R + GV      + + +++   +   E +
Sbjct: 647 IFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTILTAFVVNSDEDI 697


>gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1]
 gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1]
          Length = 810

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/888 (34%), Positives = 493/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQ++SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + D+  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLV------------ 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    + +EL  L   IK+  DI
Sbjct: 413 --------------LNFGLSEIQANSVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +L+L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELLNLGDQEEI---LTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD ++ +  V                                               
Sbjct: 695 LKEGDLLVKVLAVR---------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +      + +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLDS-DSLVSVSK 807



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 89/222 (40%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + + +V V  +RE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLLVKVLAVREN 710



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 103/291 (35%), Gaps = 80/291 (27%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK---- 731
           + L++ DE++ +   ++   +    K    + F +S I+      +  V  + L K    
Sbjct: 386 IALNNIDEVIKIIKSSK---LAKDAKERLVLNFGLSEIQ------ANSVLDMKLQKLTAL 436

Query: 732 -----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGN 784
                 D++    ++L    DY++ +     +    R  + +       +  + +  +  
Sbjct: 437 EIFKLEDEL---KVLLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEE 493

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +V  
Sbjct: 494 VLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIA 550

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNE------------IRIA------------------- 873
             VN +D + ++S++G L  +   E            I                      
Sbjct: 551 LCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELLNLGDQEEILTIKNSKDLT 610

Query: 874 -----------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                       +  +            GV++      + V S E + + E
Sbjct: 611 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04]
 gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04]
          Length = 810

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/888 (34%), Positives = 493/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A LV+E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEI---LTIKNSKEFTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                                               
Sbjct: 695 LKEGDLFVKVLAIRE--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 710 --------NPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+V     V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEVAIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEIVLKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  IRE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIREN 710



 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEV 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
                VN +D + ++S++G L  +   E            I                   
Sbjct: 548 AIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 EFTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEIVLKDE 661


>gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6]
 gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6]
          Length = 776

 Score =  737 bits (1902), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/865 (36%), Positives = 475/865 (54%), Gaps = 106/865 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I+ E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+   K Y KCARI G
Sbjct: 6   EISQELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+AA+YDAL RMAQD+++R  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 66  DVLGKYHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDTVDF PN+D + +EP VL A+ PN+L+NG  GIAVGMATN+P HNL EV 
Sbjct: 126 EEMLSDIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVC 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +A + NPDI +  LM+ ++ PDFPTG VI+GR G+ +AY TG+G I +RG   IE  
Sbjct: 186 DAIIAYLQNPDITVRELMKYVKAPDFPTGGVIVGRKGLIDAYETGKGKITVRGRVEIEN- 244

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 I++ EIPY VNKA ++EKIAEL+   ++     +RDESDR+G R+V+E++    
Sbjct: 245 ----NTIIIREIPYMVNKARLVEKIAELINSGKLEAKT-VRDESDREGIRIVVEVREDI- 298

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +  L +LY YT+LQ+ F +  +AL   +P   +L  +++ +V  R  VV RRT+Y L K
Sbjct: 299 -NTALKKLYAYTNLQTTFGIINLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKK 357

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A++R H++ GL  A+ ++D V+++I+ S +P  A+  LM+R                   
Sbjct: 358 AKERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMER------------------- 398

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSEVQ  AIL+ RL +LT +  D +  E   L  +IKE  +IL+S  R+  
Sbjct: 399 -------YELSEVQADAILQTRLQKLTAMEIDALMKEYEELIQKIKEYEEILASPQRIDA 451

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II  EL  +K++    RRT IVE   ++  E+ +  E+ ++ V+  G+VKR+ +  ++ Q
Sbjct: 452 IIASELEEIKEKYGDERRTEIVEEDGEISAEELVSFEENILIVTKNGFVKRMSIG-FKTQ 510

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGG G  G+ MR +D    +   ++   +L F++    Y    + +P      +G  + 
Sbjct: 511 HRGGVGVIGIGMRGDDEPAIIVKCNSRDKLLVFTAS-KAYWLNAYEIPKQERTGKGVNIR 569

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
             LS+ +GERI  I+PF           ++  T+ G ++R  LS+F    R+G +A    
Sbjct: 570 MYLSIPEGERIVAIVPFQNF-----EGDILILTEDGYIKRTPLSEFENAKRAGIVASGGK 624

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
                ++        ++ + T  G  VRF    +    GR++ GV+ ISL +GD +  ++
Sbjct: 625 -----IAFARHLDGKEVFIATTNGYAVRFKAEDV-PEYGRSAKGVKAISLRQGDSIAWLS 678

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +                                                          
Sbjct: 679 CIRGDGD----------------------------------------------------- 685

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ILT++  G GKRT+  ++R+ +R   G+           G +V    V  ++ ++ +S  
Sbjct: 686 ILTLTADGHGKRTAVEEYRLVSRGAMGVINA------RSGGVVFSEYVEGDEDLLTISKD 739

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS 884
           G  +++ V  I    R  +GV++  
Sbjct: 740 GYALKIEVKSIPRQGRNARGVIVSR 764



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 680 SRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
             D  +S E   + E +IL+ TK G   R  I        R  VGV GI +   D+   +
Sbjct: 474 EEDGEISAEELVSFEENILIVTKNGFVKRMSIG--FKTQHRGGVGVIGIGMRGDDEPAII 531

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                 D            ++A        T +  +++   S+            +  E 
Sbjct: 532 VKCNSRDKLLVFTASKAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPFQNFEG 591

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            IL ++E G+ KRT   +F  + R+  GI A         G +     + D  ++ + + 
Sbjct: 592 DILILTEDGYIKRTPLSEFENAKRA--GIVA-------SGGKIAFARHL-DGKEVFIATT 641

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            G  +R    ++    R+ KGV   S  + + +  +  IR    +
Sbjct: 642 NGYAVRFKAEDVPEYGRSAKGVKAISLRQGDSIAWLSCIRGDGDI 686


>gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728]
 gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma
           acidophilum]
          Length = 796

 Score =  736 bits (1901), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/883 (34%), Positives = 485/883 (54%), Gaps = 92/883 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              ++  E++ SYL YA++VI+ RAIPD+RDGLKPV RR+L+ M ++GV  +K Y KCAR
Sbjct: 5   EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 64

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GE MGKYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL 
Sbjct: 65  IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  ++DD+ ++TV FR N+DG+  EP  L ++ PN+L+NG  GIAVGMATN+  HNL 
Sbjct: 125 QIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLT 184

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ D  +  +D+ D  +D L++ ++GPDFP G ++     +  AY TGRG ++++G    
Sbjct: 185 EICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLIEAYRTGRGKVIVQGEVDA 244

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +      ++++  IPY VNKA +++ IA+L + + I DI D++DESDR G R+VI+++ 
Sbjct: 245 TEDR----RLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRD 300

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
                ++LNQLY +T+L+S   +  + L G +P+   L  ++ +F+  R +V++RR+++ 
Sbjct: 301 DDIKPLVLNQLYEHTALESSIGIINLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFR 360

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L++ ++R  VL G+  AV ++D VV I++ S + + A                       
Sbjct: 361 LDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEA----------------------- 397

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
              +        L++ Q +AILE+RL RL    ++ +R+E+  +  EIK+  +I+ S  R
Sbjct: 398 ---SSKLRNEFDLNDRQIKAILEMRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDR 454

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            +   K+E+  ++ +    RR+RI    + +   ED I  E+ ++ +S+ G VKRV    
Sbjct: 455 RIDEFKKEITEIQKKYGDKRRSRIKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADE 514

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG     M+  D +  +    +H +V +F++ G V+K K + +P  S  + G
Sbjct: 515 YRSQRRGGKGV-NTSMKTSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLG 573

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            +    L L QGER+T IM            Y++  T+ G+V++           SG   
Sbjct: 574 VSAAAFLKLAQGERVTEIMK----APPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKI 629

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L+  DE++SV     + ++ + +  G+   F  S IR   GR S+GVR + L +GD +
Sbjct: 630 ITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRE-TGRTSMGVRSMRLNEGDTI 688

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           ++  +V   +                                                  
Sbjct: 689 LTAFVVNSDED------------------------------------------------- 699

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               IL++SEKG+GKRT+  +F I +R   G+     ++    G +    PV D D++IL
Sbjct: 700 ----ILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTER--TGRVSHAIPVRDEDEVIL 753

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           VS     IR+  +EI   SR T GV +     D+RV++   I+
Sbjct: 754 VSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 11/231 (4%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAKGDQ 734
           +K     E    +    E  +++ +  G   R      R    R   GV   +  +  D 
Sbjct: 478 IKFRGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRS-QRRGGKGVNTSMKTS--DS 534

Query: 735 VISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           + SM           +       K  + +    S  +  +++       +G    E  + 
Sbjct: 535 IKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKA 594

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              K  +++ V+  G  K+T++    + +    G++   +    +   LV+V     +  
Sbjct: 595 PPEKGYYLILVTRDGSVKKTAAD--PVFDSKSSGLKIITL---EDDDELVSVSYTAGDKN 649

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + ++S KG       +EIR   R + GV      + + +++   +   E +
Sbjct: 650 MFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTILTAFVVNSDEDI 700


>gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi]
 gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi]
          Length = 810

 Score =  736 bits (1900), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/888 (34%), Positives = 490/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+    R  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ V+ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNVIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEI---LTIKNSKEFTDDSYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEIVLKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                                               
Sbjct: 695 LKEGDLFVKVLAIRE--------------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 710 --------NPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+V     V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEVAIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKEFTDDSY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVLKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  IRE+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIREN 710



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEV 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
                VN +D + +VS++G L  +   E            I                   
Sbjct: 548 AIALCVNTHDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 EFTDDSYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVLKDE 661


>gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr]
 gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr]
          Length = 810

 Score =  736 bits (1899), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/888 (34%), Positives = 494/888 (55%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE ++++   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A LV+E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVDGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AH+L GL IA+ N+DEV+ II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVA----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L+++L +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L + +R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPARIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D V     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEI---LTIKNSKELTDDSYLLLTTASGKIARFESTDFKTV 635

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G I +KL+ +D + S E   ++  ++  +K G    F    +R    R + GV G+ 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEVVLKDEKVICLSKKGSAFIFNSRDVR-LTNRGTQGVCGMK 694

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  + +  +                                               
Sbjct: 695 LKEGDLFVKVLAIK---------------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L +SE G+GKR S        R   G  +   S   + G++V    V+
Sbjct: 709 -------ENPYLLIISENGYGKRLSISKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+V     V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEVAIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKELTDDSY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKTVKSR---GVIVIKL---NDKDFVTSAEVVLKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  I+E+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLAIKEN 710



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 60/174 (34%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEV 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
                VN +D + ++S++G L  +   E            I                   
Sbjct: 548 AIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 ELTDDSYLLLTTASGKIARFESTDFKTVKSRGVIVIKLNDKDFVTSAEVVLKDE 661


>gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
 gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333]
          Length = 885

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/849 (38%), Positives = 480/849 (56%), Gaps = 48/849 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   +  + 
Sbjct: 29  RDRVEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFS 88

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+VMG YHPHG+ AIYDAL R+ Q WS+R  L+ GQGNFGS   D  AA RYTE
Sbjct: 89  KCARVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTE 148

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           C++   A  ++ D+ KDTVDF  NYDG  QEP++L AR+PN+LVNG  GIAVGMATNIP 
Sbjct: 149 CKMAPLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPP 208

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV +G    +++PD   + L+      I+GPDFPTGA ILG  GI++AY TGRGSI
Sbjct: 209 HNLREVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQILGHRGIEDAYRTGRGSI 268

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
            +R V  +E+    R+ +VVTE+PYQVN   +  KI E+VRE RI  IADLRDE S R G
Sbjct: 269 TMRAVVEVEEIQ-GRQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAG 327

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI LKR A A V+LN LY++T LQ  F  NM+AL    P   +L   ++ +   + +
Sbjct: 328 QRLVIVLKRDAVAKVVLNNLYKHTQLQDTFGANMLALVDGVPRTLSLDAFVRHWTMHQID 387

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT+YLL +   R H+L GL  A+  LDEV+ +IR SP+ + AR  LM+        
Sbjct: 388 VIVRRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLME-------- 439

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + + EVQ  AIL+++L RL  L +  I +E  ++   I + 
Sbjct: 440 ------------------LLEIDEVQATAILDMQLRRLAALEQQRIMDEHAAIEARILDY 481

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL+S  R   I++ EL ++ +     RRT I+    +M  ED I  ED+VVT++  GY
Sbjct: 482 QDILASEERQRSIVRSELGAIVERYGDERRTTILPFDGEMSVEDLIPEEDVVVTITRGGY 541

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KR     YRAQRRGGKG  G  +R++D V   F+ +TH  +LFF++LG VY+ K + LP
Sbjct: 542 AKRTRTDNYRAQRRGGKGVRGAQLREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKGYELP 601

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G   A+G+ + N+L+   GE+I  ++   + +      Y+V ATK G V++ +L+++  
Sbjct: 602 EGGRDAKGQHVANLLAFQPGEKIAQVLALRDYD---QADYLVLATKRGLVKKTRLAEYDS 658

Query: 668 INRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRN 720
               G IA+ L +      DE++S      E+D+LL ++ GQ +RF  +   +R  A R 
Sbjct: 659 SRTGGVIAINLRTDDGGAVDEVVSARIVGAEDDLLLVSRKGQSIRFTATDEALRPMA-RA 717

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV G+     D++++M +V      +          +A           +     +  
Sbjct: 718 TSGVTGMKFRADDELLAMDVVETDADLFVVTEGGFAKRTALGEYRVQGRGGLGIKVANLV 777

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           E  +L + E+G   R++  +   + R+ +G+     +K +    
Sbjct: 778 EARGDLVGALVVDSDDE--VLVIMERGKIVRSAVDEVTRTGRNTQGVT---FAKPDAGDR 832

Query: 841 LVAVFPVND 849
           ++A+    +
Sbjct: 833 IIAIALGEE 841



 Score = 64.4 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 90/256 (35%), Gaps = 18/256 (7%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST---HTSVLFFS 593
           D +V  +  G VK+  L+ Y + R GG     +   D   V ++           +L  S
Sbjct: 637 DYLVLATKRGLVKKTRLAEYDSSRTGGVIAINLRTDDGGAVDEVVSARIVGAEDDLLLVS 696

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G   +       +  P AR  + +  +     + +  +           +  +   T+
Sbjct: 697 RKGQSIRFTATDEAL-RPMARATSGVTGMKFRADDELLAMDVVET------DADLFVVTE 749

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDS-----RDEILSVETCTQENDILLTTKLGQCVRF 708
            G  +R  L ++ ++   G + +K+ +      D ++       ++++L+  + G+ VR 
Sbjct: 750 GGFAKRTALGEY-RVQGRGGLGIKVANLVEARGD-LVGALVVDSDDEVLVIMERGKIVRS 807

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +  +    GRN+ GV       GD++I++A+               +           +
Sbjct: 808 AVDEV-TRTGRNTQGVTFAKPDAGDRIIAIALGEERAVADAGEEPVEESAEGAPTTDPAE 866

Query: 769 TEEITSLKNDSSVEGN 784
            + + S    +     
Sbjct: 867 GDGVPSSPEAAPEAEE 882



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 79/273 (28%), Gaps = 109/273 (39%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A +     DY + +   +   +  R   G   E    +  +++     E   ++L  +E 
Sbjct: 472 AAIEARILDYQDILASEERQRSIVRSELGAIVERYGDERRTTILPFDGEMSVEDLIPEED 531

Query: 799 FILTVSEKGFGKRTSSYDFRIS-------------------------------------- 820
            ++T++  G+ KRT + ++R                                        
Sbjct: 532 VVVTITRGGYAKRTRTDNYRAQRRGGKGVRGAQLREDDVVDHFFVTTTHHWLLFFTNLGR 591

Query: 821 ------------NRSGKG------------------------------IRATD------- 831
                        R  KG                              + AT        
Sbjct: 592 VYRAKGYELPEGGRDAKGQHVANLLAFQPGEKIAQVLALRDYDQADYLVLATKRGLVKKT 651

Query: 832 ---------------VSKINEIG----ALVAVFPVNDNDQIILVSDKGTLIRVPVNE--I 870
                          ++   + G     +V+   V   D ++LVS KG  IR    +  +
Sbjct: 652 RLAEYDSSRTGGVIAINLRTDDGGAVDEVVSARIVGAEDDLLLVSRKGQSIRFTATDEAL 711

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           R  +RAT GV       D+ +++++ + E++  
Sbjct: 712 RPMARATSGVTGMKFRADDELLAMDVV-ETDAD 743


>gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299]
          Length = 803

 Score =  735 bits (1898), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/854 (39%), Positives = 506/854 (59%), Gaps = 88/854 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  LI+GQGNFGS
Sbjct: 1   MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R  K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG 
Sbjct: 61  VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT IP HNL E++D  + ++DNP+   D LME I+GPDFPTG  I GR GI +
Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIFGRRGIID 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + IR   HIE   G +E IV+ E+PYQVNKA ++E IA L ++K+I  I+++
Sbjct: 181 AYNTGRGRVRIRAKHHIET-RGKKEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEV 239

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELK+ A +++++N LY+ T +++ F + ++A+   +P+ FTL  +L 
Sbjct: 240 RDESDRDGIRVVIELKKDAMSEIVMNNLYKSTPMETTFGIILLAVYNKEPKVFTLPELLN 299

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F++ R+ V++RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  
Sbjct: 300 VFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLEL 359

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS +Q++AIL++RL RLTGL RD +  E   
Sbjct: 360 R--------------------------FGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQE 393

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL S  +L+ IIK+EL  ++++  + R T I +   +++ ED I  E MV
Sbjct: 394 LMAIIAELESILKSEEKLVEIIKEELSEIREKYSSKRLTDIEDSYDEIDIEDLIPNEPMV 453

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++H GYVKRVP+  Y  QRRGGKG+  V   D+DF+   F+ +TH +++F +++G +Y
Sbjct: 454 VTITHNGYVKRVPIKSYEKQRRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLY 513

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+R+P GS  A+GKA++N+++L   E+I  I+P  + +    +  + F T++G V+R
Sbjct: 514 WLKVYRIPEGSRTAKGKAVVNLINLRPDEKIMEIIPTSDFD---ESKSLAFFTRNGVVKR 570

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAG 718
             LS+F  I  +G  A+ LD  DEI++ +  T     +++ T LGQC+RF +   R   G
Sbjct: 571 TSLSEFSNIRSNGVRAIVLDDADEIVTAKITTPSTQYLMIFTSLGQCIRFDVEKTRE-QG 629

Query: 719 RNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R++ GVRGI      D V+   +V + +                                
Sbjct: 630 RSTRGVRGIKFKHDTDFVVDANVVDNIE-------------------------------- 657

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                               Q +LTVS+KG GKRT+  ++R +NR+G G+ +  +S   +
Sbjct: 658 --------------------QELLTVSQKGIGKRTTVEEYRETNRAGSGVISMKLSA--K 695

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +V    V++   +++++  G +IRV +  IR A R T GV+I +    ++VVS+ + 
Sbjct: 696 TGNVVGAVLVDEAQDLMILTSIGKMIRVDMQTIRKAGRNTSGVIIVNVDAKDKVVSIAKC 755

Query: 898 RESEIVD-EAESTE 910
            + +  + + E+ +
Sbjct: 756 PKEDDDELDIENAD 769


>gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
 gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9]
          Length = 814

 Score =  735 bits (1896), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/884 (33%), Positives = 466/884 (52%), Gaps = 90/884 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 5   EQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DPPAA RYTE 
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP H
Sbjct: 125 RLSTIAMELLRDIDKRTVPFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++D C A++ NP + +  LM I+RGPDFPTG  I+G  GI+ AYA+G+G I IR  
Sbjct: 185 NLREIIDACFALMANPSMTVAELMTIVRGPDFPTGGTIMGEEGIREAYASGKGRIYIRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIV+TEIPYQV K+ ++  +  +  EKR+  IA++RDES R G R+V+E
Sbjct: 245 AEIEDVRGGKQQIVITEIPYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  IL  L++ T LQ  F+ NMVA+    P +  L  +L A++  ++EVV  RT
Sbjct: 305 LKKDADAQGILAYLFKKTDLQVTFNFNMVAIVNKAPRQLGLKEMLAAYIDHQKEVVTNRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DRAHVL GL  A+  LDE++  I+ S N + A+  L+ +             
Sbjct: 365 RFDLEKAEDRAHVLEGLVKALNLLDEIIATIKASKNRQDAQNNLVSK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AIL L+L RLT L    +  EL      I     IL+S
Sbjct: 412 -------------FGFTERQADAILTLQLYRLTNLEITQLEKELLETQKRIAYLQSILAS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +I++E+L ++ +    RR+ I   +    +  E  +  ED+++TVS  GY+KR 
Sbjct: 459 EKKLLSVIREEMLEIRTKFGIDRRSDIRGEVEELKVNLEVMVQSEDVLLTVSREGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y    R G       ++D D V  L  V+T  S+L F+  G  +   V ++P    
Sbjct: 519 TMLSY---TRSGGELESAGVKDGDVVRHLLSVNTIDSLLLFTKKGQYFVLPVHQVPEFKW 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G AL+N++ L++ + +  I+P  + +    +  ++F TK G V+R +L ++     +
Sbjct: 576 KDNGTALVNVIPLSKEDSVIGIVPIRDFD--QASASLLFITKRGQVKRTELKEYKSNRST 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A K+   DE+++V       ++LL ++ G  +RFP + +    GR + GVRG+ L  
Sbjct: 634 AIAACKVGDGDEVIAVLESNSNQELLLVSRQGMAIRFPETEVNPM-GRVAAGVRGMQLKD 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+++  A+V + + +                                            
Sbjct: 693 DDEIVGCALVANDEGE-------------------------------------------- 708

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE---IGA-LVAVFPV 847
                   +L +S+ G+GKR+   ++ I  R GKGI   +  +       G  L      
Sbjct: 709 --------VLVLSDLGYGKRSLLAEYPIQGRGGKGIATFEFKEGKRVKPNGNGLTGAVYC 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +   +IL++  G    +P ++  I  R + G  + +  K++ +
Sbjct: 761 KEEKSLILIAASGATWTLPTDKTPIDERRSIGKPLVTLDKNDLI 804



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 93/272 (34%), Gaps = 57/272 (20%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +    +   ++  ++ G ++R  +  + +     + A  +   D +  + +    
Sbjct: 492 LKVNLEVMVQSEDVLLTVSREGYIKRTTMLSYTRSGGELESA-GVKDGDVVRHLLSVNTI 550

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGR--NSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           + +LL TK GQ    P+  +  F  +   +  V  I L+K D VI +  +          
Sbjct: 551 DSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLSKEDSVIGIVPIRD-------- 602

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                           +L ++++G  KR
Sbjct: 603 -----------------------------------------FDQASASLLFITKRGQVKR 621

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   ++  SNRS     A    K+ +   ++AV   N N +++LVS +G  IR P  E+ 
Sbjct: 622 TELKEY-KSNRST----AIAACKVGDGDEVIAVLESNSNQELLLVSRQGMAIRFPETEVN 676

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R   GV       D+ +V    +   E  
Sbjct: 677 PMGRVAAGVRGMQLKDDDEIVGCALVANDEGE 708


>gi|296118613|ref|ZP_06837191.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
 gi|295968512|gb|EFG81759.1| DNA gyrase, A subunit [Corynebacterium ammoniagenes DSM 20306]
          Length = 856

 Score =  734 bits (1895), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/859 (38%), Positives = 498/859 (57%), Gaps = 46/859 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     + +    I  + I +EM+ SY+ YA++VI+GRA+P++RDGLKPVHRRIL+ M
Sbjct: 1   MSDD----NGDLYDKIHPIDINEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G    + YVK AR   + MG +HPHG++AIYDAL R+AQ W++R  +++GQGNFGS 
Sbjct: 57  YDSGYRPERGYVKSARPVADAMGHFHPHGDSAIYDALVRLAQPWNMRYPMVDGQGNFGSP 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             D PAA RYTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG G
Sbjct: 117 GNDGPAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRIPNLLMNGSG 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVI----DNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D    ++     + +  L+A M+ ++GPDFPT  +I+G +G
Sbjct: 177 GIAVGMATNIPPHNLKELADAIFWLLENAEASEEESLEACMKFVKGPDFPTYGLIVGDSG 236

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           IK+AY TGRGSI +RGV+ IE+  G R+ IV+TE+PYQVN   ++  IAE V   +I  I
Sbjct: 237 IKDAYTTGRGSIRMRGVTSIEE-QGSRQTIVITELPYQVNPDNLVTNIAESVANGKIAGI 295

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           + + DE SDR G R+VI LKR A A V+LN LY+++ LQ+ F  NM+++    P    + 
Sbjct: 296 SKIEDESSDRVGMRIVITLKRDAVARVVLNNLYKHSQLQTSFGANMLSIVDGVPRTLRID 355

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +VA + EV+VRRT+Y L++A  RAHVL GL  A+  LDEV+ +IR SP  + AR 
Sbjct: 356 QMLRYYVAHQIEVIVRRTQYRLDEAEKRAHVLRGLVKALDMLDEVIALIRRSPTVDEARE 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM                            + +  +Q  AIL ++L RL  L R  I +
Sbjct: 416 GLMS--------------------------LLDVDTIQADAILAMQLRRLAALERQKIVD 449

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL  + +EI +  DIL+   R   I+  EL  + D+    RRT+IV    D+ DED I R
Sbjct: 450 ELAEIELEIADYKDILAKPERQRAIVHDELQEIVDKYGDERRTQIVAATGDVTDEDLIAR 509

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E++VVT++  GY KR  +  Y+AQ+RGGKG  G  ++ +D V + FI STH  +LFF++ 
Sbjct: 510 ENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAELKQDDIVKNFFICSTHDWILFFTNF 569

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY+ K + LP  S  ARG+ + N+L     E+I  ++     E   +  Y+V ATK G
Sbjct: 570 GRVYRLKAYELPEASRTARGQHVANLLEFQPEEKIAQVIQIQSYE---DAPYLVLATKQG 626

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            V++++L+D+     +G IA+ L+  D ++  E  +  +DILLT++ GQ +RF      +
Sbjct: 627 RVKKSRLTDYESARSAGLIAINLNEGDSLIGAELVSDADDILLTSEQGQAIRFTADDEQL 686

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+     DQ++S+++V                 +A           + 
Sbjct: 687 RPM-GRATAGVKGMRFRDDDQLLSLSVVQEGGYLLVATSGGYGKRTAIEEYAPQGRGGLG 745

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            +    + +          ++  E  I  ++  G   RT   + R S+R+  G+R  ++S
Sbjct: 746 VMTFKYTPKRGKLIGAITVMEDDE--IFAITSVGGVIRTEVNEIRPSSRATMGVRLVNLS 803

Query: 834 KINEIGALVAVFPVNDNDQ 852
             +++  LV    V D+ +
Sbjct: 804 --DDVELLVIDRNVEDDGE 820



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V  +A +    ADY + +   +   A       +  +    +  + +     +   ++L 
Sbjct: 448 VDELAEIELEIADYKDILAKPERQRAIVHDELQEIVDKYGDERRTQIVAATGDVTDEDLI 507

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV-AVFPVNDNDQI 853
            +E  ++T++  G+ KRT    ++   R GKG+R  ++    +   +V   F  + +D I
Sbjct: 508 ARENVVVTITSTGYAKRTKVDSYKAQKRGGKGVRGAEL----KQDDIVKNFFICSTHDWI 563

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK---DERVVSVERIRESEI 902
           +  ++ G + R+   E+  ASR  +G  + +  +   +E++  V +I+  E 
Sbjct: 564 LFFTNFGRVYRLKAYELPEASRTARGQHVANLLEFQPEEKIAQVIQIQSYED 615



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 93/256 (36%), Gaps = 13/256 (5%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                   +V  +  G VK+  L+ Y + R  G     +   D     +L        +L
Sbjct: 611 QSYEDAPYLVLATKQGRVKKSRLTDYESARSAGLIAINLNEGDSLIGAELVS--DADDIL 668

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S  G   +       +  P  R  A +  +     +++ ++             Y++ 
Sbjct: 669 LTSEQGQAIRFTADDEQL-RPMGRATAGVKGMRFRDDDQLLSLSVVQ------EGGYLLV 721

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVR 707
           AT  G  +R  + ++    R G   M       R +++   T  ++++I   T +G  +R
Sbjct: 722 ATSGGYGKRTAIEEYAPQGRGGLGVMTFKYTPKRGKLIGAITVMEDDEIFAITSVGGVIR 781

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ IR  + R ++GVR ++L+   +++ +   +  D + +         + +      
Sbjct: 782 TEVNEIRP-SSRATMGVRLVNLSDDVELLVIDRNVEDDGEEEALAVAKGEKTVEDARQEL 840

Query: 768 DTEEITSLKNDSSVEG 783
           D  +     NDS  + 
Sbjct: 841 DPNKSGDQDNDSENKE 856


>gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 854

 Score =  732 bits (1890), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/848 (40%), Positives = 506/848 (59%), Gaps = 84/848 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +  + GI  V +  EM+NS+L YA++VI+ RA+PD RDGLKPVHRRILF M ++G+ +  
Sbjct: 86  DAPKDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGS 145

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           ++ K ARI G+V+GKYHPHG++++Y+A+ RMAQD+S+R  L++G GNFGS+DGD  AA R
Sbjct: 146 QHRKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMR 205

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L+ + KDTVDF  NYD S +EP VL +R+PN+LV+GG GIAVGMAT+
Sbjct: 206 YTEARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATS 265

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGE +D  +A+ +NP+ID+  LME + GPDFPTGA+ILG  GIK+AY TG+GSI 
Sbjct: 266 IPPHNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMILGNAGIKDAYLTGKGSIP 325

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR ++ IE+ S  + +I+VTEIPY+V K A++EKIAELV++K+I  IADLRDES R+G R
Sbjct: 326 IRSIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIR 385

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+  +  V+LN+LYR T+LQ  ++VN VAL   +P+   L   L+ ++  +EEVV
Sbjct: 386 IVIDVKKNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGEPKVLNLKQALEVYLRHQEEVV 445

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR K+ L KA+DR H+L GL IAV N+DEV+ II+ S     A+  L +R         
Sbjct: 446 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKR--------- 496

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              L+E QT+AI+++RL RLTGL  +++  E+  L  EI+    
Sbjct: 497 -----------------FNLTEKQTKAIVDMRLGRLTGLAIENMLEEMAELRKEIERIEF 539

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           IL++ S L+ +I +EL  +K++ +  RRT+I       + DED I + D+V+T S  G+V
Sbjct: 540 ILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTITDEDLIPQRDIVITTSAKGFV 599

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+ L  Y+ QRRGG G   +   D+D +  +   +THT +L FS+   VY+ +   +P 
Sbjct: 600 KRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTTHTDLLLFSNHARVYRVRAHEIPE 659

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S Q++G A INI+   + +    I+     ++   + Y+  ATK+G +++ +L+++ +I
Sbjct: 660 LSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDEDHYLFTATKNGIIKKTRLTEYERI 719

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N +GK A  L   DE++     T E+ ILL     + V+F     R  + R + GV+GI+
Sbjct: 720 NANGKYAFNLREGDELIRAMIITDEDLILLANDEERIVKFQAIDFRPIS-RTATGVKGIT 778

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L     V S                                                   
Sbjct: 779 LDSHQTVSS--------------------------------------------------- 787

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  + + ILT+ +KGFGK T    FR+  R GKG++  +       G +V    VN
Sbjct: 788 --TSTSQEGELILTIGKKGFGKLTHHSLFRLIKRGGKGVKGINSK---LAGDIVFARFVN 842

Query: 849 DNDQIILV 856
             D+++L+
Sbjct: 843 PQDELLLL 850



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 64/277 (23%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA--MKLDSRDEILSVETCTQ 692
              +++       V+  +  G V+R  L ++    R G     MK    D+I S+ T T 
Sbjct: 577 TITDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKTYDDDDIASILTTTT 636

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
             D+LL +   +  R     I   + R S GV  I++       +G++++SM  V   D 
Sbjct: 637 HTDLLLFSNHARVYRVRAHEIPELS-RQSKGVAFINIIPSLRVKEGERIVSMLPVDTYD- 694

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                            ++ ++ T ++ 
Sbjct: 695 -------------------------------------------------EDHYLFTATKN 705

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+T   ++   N +GK   A ++ +      L+    + D D I+L +D+  +++  
Sbjct: 706 GIIKKTRLTEYERINANGK--YAFNLREG---DELIRAMIITDEDLILLANDEERIVKFQ 760

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             + R  SR   GV   +    + V S    +E E++
Sbjct: 761 AIDFRPISRTATGVKGITLDSHQTVSSTSTSQEGELI 797



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 92/241 (38%), Gaps = 25/241 (10%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------GRNSVGVRGISL 729
           + +++ DE++++   ++ +      +     RF ++  +  A      GR +       L
Sbjct: 468 IAVENIDEVIAIIKKSKTD---GEAQANLAKRFNLTEKQTKAIVDMRLGRLTG------L 518

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A  + +  MA +       +  +     +         + +E  + K  + +   I    
Sbjct: 519 AIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYNDKRRTQINYEIQGTI 578

Query: 790 CQE-LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             E L  +   ++T S KGF KR    +++   R G GI         +   + ++    
Sbjct: 579 TDEDLIPQRDIVITTSAKGFVKRMDLEEYKTQRRGGVGIGTMKT---YDDDDIASILTTT 635

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS------TAKDERVVSVERIRESEI 902
            +  ++L S+   + RV  +EI   SR +KGV   +        + ER+VS+  +   + 
Sbjct: 636 THTDLLLFSNHARVYRVRAHEIPELSRQSKGVAFINIIPSLRVKEGERIVSMLPVDTYDE 695

Query: 903 V 903
            
Sbjct: 696 D 696


>gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana]
          Length = 917

 Score =  732 bits (1889), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/870 (39%), Positives = 497/870 (57%), Gaps = 72/870 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 97  DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 156

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 157 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 216

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 217 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 276

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 277 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 336

Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 337 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 396

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 397 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 456

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I                        
Sbjct: 457 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELIT----------------------- 493

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   SS T        LSE Q  AILE+ L RLT L R    +E +SL  +I +  
Sbjct: 494 ---KASSHSSATAALQSEYGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 550

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ VS  GY
Sbjct: 551 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 610

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 611 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 670

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 671 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFA---EDRYLLMLTVNGCIKKVSLKLFSG 727

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  + RN+ GV  +
Sbjct: 728 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 786

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+  +     E                                   SE
Sbjct: 787 RLKNEDKIASMDIIPASLRKDME---------------------------------EKSE 813

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+    V              V
Sbjct: 814 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSGFSP-----FLVV 868

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             ++Q++LVS  GT+ R+ V +I I SR  
Sbjct: 869 FSDEQVVLVSQSGTVNRIKVRDISIQSRRA 898



 Score = 94.5 bits (233), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 96/283 (33%), Gaps = 67/283 (23%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V+R K   F        GK   KL   D +     C   
Sbjct: 590 LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAH 649

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     RN+ G   V+ +S+++G++V S+  V         
Sbjct: 650 DHVLFFSDRGIVYSTRAYKI-PECSRNAAGTPLVQILSMSEGERVTSIVPVSE------- 701

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        +++++L ++  G  K
Sbjct: 702 -------------------------------------------FAEDRYLLMLTVNGCIK 718

Query: 811 RTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + S   F   R +     GI A  +   N    L  V   + +D + + S  G +     
Sbjct: 719 KVSLKLFSGIRST-----GIIAIQL---NSGDELKWVRCCSSDDLVAMASQNGMVALSTC 770

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +R  SR TKGV       ++++ S++ I  S   D  E +E
Sbjct: 771 DGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSE 813



 Score = 38.2 bits (87), Expect = 6.1,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           + ++ G L  +  + + + ++ VS+KG + R+  +   +  R T G  +     D+
Sbjct: 583 EDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDD 638


>gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii]
          Length = 683

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/686 (50%), Positives = 470/686 (68%), Gaps = 12/686 (1%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K A
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + 
Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAE 240

Query: 256 IE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+
Sbjct: 241 VEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEV 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT 
Sbjct: 301 KRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++  
Sbjct: 361 FELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERA 420

Query: 435 DDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E
Sbjct: 421 GDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAE 480

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
            L IL S  RL+ +I++EL  V+++    RRT I     D+  ED I +ED+VVT+SH G
Sbjct: 481 LLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQG 540

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS G VY  KV++L
Sbjct: 541 YVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQL 600

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +G V++  L++F 
Sbjct: 601 PEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATANGTVKKTVLTEFN 657

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ 692
           ++  +GK+A+KL   DE++ V+  + 
Sbjct: 658 RLRTAGKVAIKLVDGDELIGVDLTSG 683



 Score = 79.1 bits (193), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 474 LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 533

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 534 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 590

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            +  + V ++  A+R  +G   V +    +DER+ ++  + E E 
Sbjct: 591 RVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE 635



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 21/169 (12%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
             TQE+ ++  +  G     P+S       R   G     + + D +  + +    D   
Sbjct: 526 LITQEDVVVTLSHQGYVKYQPLSEYEA-QRRGGKGKSAARIKEEDFIDRLLVANTHDHIL 584

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   Y   +        G              +  I+         +   +   + 
Sbjct: 585 CFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATA 644

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            G  K+T   +F     +GK                VA+  V D D++I
Sbjct: 645 NGTVKKTVLTEFNRLRTAGK----------------VAIKLV-DGDELI 676


>gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
 gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145]
          Length = 899

 Score =  731 bits (1887), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/844 (37%), Positives = 493/844 (58%), Gaps = 34/844 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  +G++ V + +EM+NS+L YA++VI+ RA+PD RDGLKPVHRRIL+ M+++G+ ++ +
Sbjct: 66  ESFEGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITYSSQ 125

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD  AA RY
Sbjct: 126 HRKSARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDSAAAMRY 185

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K A  +LD + KDTVDF  NYD S  EPVVL +R+PN+LV+G  GIAVGMAT I
Sbjct: 186 TEARMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRFPNLLVSGATGIAVGMATEI 245

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++  +A   N +I  + LM  I+GPDFPTGA ILG  GI + Y TG+G I +
Sbjct: 246 PPHNLSETINATIAFARNNEITTEELMIHIKGPDFPTGATILGVKGILDMYETGKGKIPV 305

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+ +  + +I+VTEIPY V K  ++EKI EL ++K +  I +LRDES+R+G R+
Sbjct: 306 RSKTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDKVVEGIGELRDESNREGIRI 365

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VI++K+G +  V+LN+L++ + LQ+  + N+VAL   +P+   L  IL  ++  + EVV 
Sbjct: 366 VIDVKKGFNPHVLLNKLFQKSYLQTNVNANLVALVNGEPKLLNLKQILNIYLNHQIEVVT 425

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR K+ L KA D+ H+L GL IAV N+DEVV+II+ S N   A+  L  R          
Sbjct: 426 RRLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTR---------- 475

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E QT+AIL++ L RLTGL  + +  E++ L  EI     I
Sbjct: 476 ----------------FNLTEKQTKAILDMSLRRLTGLNIEKMNQEIDELNKEISYIRSI 519

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVK 549
           L SR +L+ +I  EL  +K++    RRT I E  +  + DED I    +V+T S  GYVK
Sbjct: 520 LESREKLIDLIVDELEIIKEKYGDKRRTEIDESAISSISDEDLIPVNTIVITTSVKGYVK 579

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R+ L  Y  Q RGG G + +    +D ++ +   +THT ++ F++LG VY+ +  ++P G
Sbjct: 580 RMKLDDYNVQNRGGIGVNTMKTYADDDISTILQTTTHTDLMLFTNLGRVYRIRAHQIPEG 639

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S Q++G   INI+     +    ++     E+  +  Y+V  T++G +++ ++S +  I 
Sbjct: 640 SKQSKGTPFINIIPSLNEKEGEKVVSLLAVETYSDEQYLVTVTENGIIKKTQISQYESIR 699

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +GK A KL   D +++       N+IL+ +     V+F  + +R   GR+S GVRGI+L
Sbjct: 700 SNGKYAFKLRENDHLVNAFIVEDGNEILIASNGKNVVKFSSNDLRPL-GRSSFGVRGITL 758

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+G +V++ +     D            ++                  ++   G++    
Sbjct: 759 AEGKKVLTASSDKDGDFILSIGTKGFGKLTPSEEFRLIKRGGKGVTAINADKAGDLI--- 815

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +        L ++  G   R       +++R+ KG++  ++        ++AV  V +
Sbjct: 816 FAKFVKPNDEALIITAAGTTIRILISQISVTSRATKGVKIINLRD---NDEIIAVEIVKN 872

Query: 850 NDQI 853
             ++
Sbjct: 873 EQEL 876


>gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana]
          Length = 899

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/870 (39%), Positives = 497/870 (57%), Gaps = 72/870 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I    +  E   SY++YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y
Sbjct: 79  DESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPY 138

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +SLR  LI+G GNFGS+D DPPAA RYT
Sbjct: 139 KKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYT 198

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL   A   LL DL +DTVDF  N+D S +EP VL AR P +L+NG  GIAVGMATNI
Sbjct: 199 ECRLDPLAEAVLLSDLDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNI 258

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD   A+I NP+  L  L+E +  PDFPTG +I+G  G+ +AY TGRG +V+
Sbjct: 259 PPHNLGELVDVLCALIHNPEATLQELLEYMPAPDFPTGGIIMGNLGVLDAYRTGRGRVVV 318

Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E       R  +++TEIPYQ NKA +++KIAELV  K +  I+D+RDESDR G 
Sbjct: 319 RGKAEVELLDPKTKRNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGM 378

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKRG    ++LN LYR+T+LQS FS NMV +   +P+   L  +L+AF+ FR  V
Sbjct: 379 RVVIELKRGGDPALVLNNLYRHTALQSSFSCNMVGICDGEPKLMGLKELLQAFIDFRCSV 438

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L+ A+ R H++ G+ + + N+DEV+ +I                        
Sbjct: 439 VERRARFKLSHAQQRKHIIEGIVVGLDNVDEVIELIT----------------------- 475

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   SS T        LSE Q  AILE+ L RLT L R    +E +SL  +I +  
Sbjct: 476 ---KASSHSSATAALQSEYGLSEKQAEAILEITLRRLTALERKKFTDESSSLTEQITKLE 532

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGY 547
            +LS+R+ +L +I+QE + +KD   +PRR+ + +    D+ED D I  E+M++ VS  GY
Sbjct: 533 QLLSTRTNILKLIEQEAIELKDRFSSPRRSMLEDSDSGDLEDIDVIPNEEMLMAVSEKGY 592

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+    +  Q RG  G+S   +R +D ++D  +   H  VLFFS  G VY  + +++P
Sbjct: 593 VKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAHDHVLFFSDRGIVYSTRAYKIP 652

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  A G  L+ ILS+++GER+T+I+P  E      + Y++  T +G +++  L  F  
Sbjct: 653 ECSRNAAGTPLVQILSMSEGERVTSIVPVSEFA---EDRYLLMLTVNGCIKKVSLKLFSG 709

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L+S DE+  V  C+ ++ + + ++ G         +R  + RN+ GV  +
Sbjct: 710 IRSTGIIAIQLNSGDELKWVRCCSSDDLVAMASQNGMVALSTCDGVRTLS-RNTKGVTAM 768

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++ SM I+  +     E                                   SE
Sbjct: 769 RLKNEDKIASMDIIPASLRKDME---------------------------------EKSE 795

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +     +    ++L V E G+GKR     FR S  +  G+    V              V
Sbjct: 796 DASLVKQSTGPWLLFVCENGYGKRVPLSSFRRSRLNRVGLSGYKVGSGFSP-----FLVV 850

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             ++Q++LVS  GT+ R+ V +I I SR  
Sbjct: 851 FSDEQVVLVSQSGTVNRIKVRDISIQSRRA 880



 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 96/283 (33%), Gaps = 67/283 (23%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V+R K   F        GK   KL   D +     C   
Sbjct: 572 LEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSDFLVCHAH 631

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     RN+ G   V+ +S+++G++V S+  V         
Sbjct: 632 DHVLFFSDRGIVYSTRAYKI-PECSRNAAGTPLVQILSMSEGERVTSIVPVSE------- 683

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        +++++L ++  G  K
Sbjct: 684 -------------------------------------------FAEDRYLLMLTVNGCIK 700

Query: 811 RTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + S   F   R +     GI A  +   N    L  V   + +D + + S  G +     
Sbjct: 701 KVSLKLFSGIRST-----GIIAIQL---NSGDELKWVRCCSSDDLVAMASQNGMVALSTC 752

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + +R  SR TKGV       ++++ S++ I  S   D  E +E
Sbjct: 753 DGVRTLSRNTKGVTAMRLKNEDKIASMDIIPASLRKDMEEKSE 795



 Score = 38.2 bits (87), Expect = 6.5,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 27/56 (48%)

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           + ++ G L  +  + + + ++ VS+KG + R+  +   +  R T G  +     D+
Sbjct: 565 EDSDSGDLEDIDVIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDD 620


>gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
 gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 847

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/855 (37%), Positives = 475/855 (55%), Gaps = 50/855 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   N 
Sbjct: 25  EAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 84

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNFGS     PAA R
Sbjct: 85  GYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 144

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 145 YTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLINGSEGIAVGMATR 204

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV D     + NP+   +      ++ I+GPDFPTGA ILGR GI+  Y TGR
Sbjct: 205 IPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILGRRGIEETYRTGR 264

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSI  R V ++E+    R  +V TE+PYQVN   +  KIA+LV++ ++  IAD+RDE SD
Sbjct: 265 GSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQVKIAQLVKDGQLQGIADIRDETSD 323

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   ++ G +  ++A 
Sbjct: 324 RAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTLSIDGFIHYWIAH 383

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 384 QVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAEDARVGLM------ 437

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 438 --------------------DFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 477

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED I  ED+VVT++ 
Sbjct: 478 ADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDLIPEEDVVVTITR 537

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF++ G VY+ K +
Sbjct: 538 GGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGRVYRAKAY 597

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++         +  Y+V AT+ G V++ +L+D
Sbjct: 598 EIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFA---DKDYLVLATRLGFVKKTRLTD 654

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFA 717
           +      G IA+KL        D+++S       +D++L ++ GQ +RF      +R   
Sbjct: 655 YDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLRFNACDEQLRPM- 713

Query: 718 GRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR + GV G+     D++++M +V   AD        Y K  +     + G       + 
Sbjct: 714 GRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRGGLGIKVA 773

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N     G++      E   ++  +L +   G   R+   +   + R+ +G+     S+ +
Sbjct: 774 NLVEARGDLVGALVTE---EDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVI---FSRAD 827

Query: 837 EIGALVAVFPVNDND 851
           E   ++A+    DND
Sbjct: 828 EGDKVIAITLNVDND 842



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    AD+ + +   +   +      G+  +    +  +++     E   ++L  +E  +
Sbjct: 473 LEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDLIPEEDVV 532

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  G+ KRT    +R  +R GKGI+   + + +++      F  + +D ++  ++ G
Sbjct: 533 VTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEH---FFTTSSHDWLLFFTNFG 589

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            + R    EI    R +KG  + +      DER+  V ++      D
Sbjct: 590 RVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFADKD 636


>gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 847

 Score =  730 bits (1885), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/855 (37%), Positives = 475/855 (55%), Gaps = 50/855 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   N 
Sbjct: 25  EAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 84

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNFGS     PAA R
Sbjct: 85  GYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 144

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 145 YTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLINGSEGIAVGMATR 204

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV D     + NP+   +      ++ I+GPDFPTGA ILGR GI+  Y TGR
Sbjct: 205 IPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILGRRGIEETYRTGR 264

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSI  R V ++E+    R  +V TE+PYQVN   +  KIA+LV++ ++  IAD+RDE SD
Sbjct: 265 GSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQVKIAQLVKDGQLQGIADIRDETSD 323

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   ++ G +  ++A 
Sbjct: 324 RAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTLSIDGFIHYWIAH 383

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 384 QVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAEDARVGLM------ 437

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 438 --------------------DFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 477

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED I  ED+VVT++ 
Sbjct: 478 ADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDLIPEEDVVVTITR 537

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF++ G VY+ K +
Sbjct: 538 GGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGRVYRAKAY 597

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++         +  Y+V AT+ G V++ +L+D
Sbjct: 598 EIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFT---DKDYLVLATRLGFVKKTRLTD 654

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFA 717
           +      G IA+KL        D+++S       +D++L ++ GQ +RF      +R   
Sbjct: 655 YDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLRFNACDEQLRPM- 713

Query: 718 GRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR + GV G+     D++++M +V   AD        Y K  +     + G       + 
Sbjct: 714 GRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRGGLGIKVA 773

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N     G++      E   ++  +L +   G   R+   +   + R+ +G+     S+ +
Sbjct: 774 NLVEARGDLVGALVTE---EDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVI---FSRAD 827

Query: 837 EIGALVAVFPVNDND 851
           E   ++A+    DND
Sbjct: 828 EGDKVIAITLNVDND 842



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    AD+ + +   +   +      G+  +    +  +++     E   ++L  +E  +
Sbjct: 473 LEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDLIPEEDVV 532

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  G+ KRT    +R  +R GKGI+   + + +++      F  + +D ++  ++ G
Sbjct: 533 VTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEH---FFTTSSHDWLLFFTNFG 589

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            + R    EI    R +KG  + +      DER+  V ++      D
Sbjct: 590 RVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFTDKD 636


>gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 873

 Score =  730 bits (1883), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/855 (39%), Positives = 485/855 (56%), Gaps = 48/855 (5%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E  + + E E   I  V I  EMQNSYL YA++VI+GRA+P++RDGLKPVHRRIL+ M 
Sbjct: 16  AETTLVAAEAEAGRINYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAMY 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
             G   N  + KC R+ G+V+ K+HPHG+ A+YDALAR+ Q WSLR  LI GQGNFGS  
Sbjct: 76  DGGFRPNAGFYKCMRVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSPG 135

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
              PAA RYTEC++   A  ++ D+ ++TVDF  NYDG  QEPVVL AR+PN+LVNG  G
Sbjct: 136 NLGPAAPRYTECKMAPLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSEG 195

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGI 237
           IAVGMAT IP HNL EV +G    +D+P+   + L+     I++GPDFPTGA ILG+T I
Sbjct: 196 IAVGMATRIPPHNLREVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATILGKTAI 255

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI+ R V +IE+   +R+ +VVTE PYQVN   +  KIA+LV++  +  IA
Sbjct: 256 EQVYRTGRGSIIQRAVVNIEEIQ-NRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGIA 314

Query: 298 DLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+RDE SDR G R+VI LKR A A V+LN LY+ T LQS F  NM+AL    P   +L G
Sbjct: 315 DIRDETSDRSGQRLVIVLKRDAVAKVVLNNLYKRTDLQSSFPANMLALVDGVPRTLSLDG 374

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            +  +V  + EV++RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  
Sbjct: 375 FVHYWVKHQVEVIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARVG 434

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM                            + + EVQ  AIL ++L RL  L R  I +E
Sbjct: 435 LM--------------------------DLLKIDEVQADAILAMQLRRLAALERQKILDE 468

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L  ++++  DI+++ +R   I+ +EL  + +     RRT IV    +M DED I  E
Sbjct: 469 HAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFGDERRTAIVPFNGEMTDEDLIPEE 528

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           ++VVT++  GY KR  +  Y+AQ RGGKG  G  +R +D V   F+ +TH  +LFF++LG
Sbjct: 529 EVVVTITRDGYAKRTRVDNYKAQHRGGKGVRGAKLRQDDVVEHFFVTTTHHWLLFFTNLG 588

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY+ K + +P G   +RG+ + N+L+    E I+ ++   + E      Y+V ATK G 
Sbjct: 589 RVYRAKGYEIPEGGRDSRGQHVANLLAFQPDEAISQVLAIRDYE---QAQYLVLATKSGL 645

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPIS 711
           V++  L+D+      G IA+ L        DE++S      E+D++L +  GQ +RF  +
Sbjct: 646 VKKTALADYNSPRSGGLIAINLRETEDGQVDELVSAALVNAEDDLILVSCGGQSLRFNCT 705

Query: 712 A--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR++ GVRG+   + D +++M ++ H               SA         
Sbjct: 706 DEAVRPM-GRSTSGVRGMRFREDDALLTMEVIEHDSDLLVVTEGGFAKRSAIDTYPVRGR 764

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
             +     +   +        +    +E  +L + E G   R    +   + R+ +G+  
Sbjct: 765 GGLGVKVANLVEDRGGLVGALKV--HEEDEVLVIMESGNIVRIPVAEISRTGRTTQGVT- 821

Query: 830 TDVSKINEIGALVAV 844
              ++ NE   ++AV
Sbjct: 822 --FARPNEGDRIIAV 834



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 87/240 (36%), Gaps = 16/240 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV---STHTSVLFFSSLGFVY 599
           +  G VK+  L+ Y + R GG     +   ++  V +L      +    ++  S  G   
Sbjct: 641 TKSGLVKKTALADYNSPRSGGLIAINLRETEDGQVDELVSAALVNAEDDLILVSCGGQSL 700

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +               + +    S  +G R          E   ++  ++  T+ G  +R
Sbjct: 701 RFNCTD-------EAVRPMGRSTSGVRGMRFREDDALLTMEVIEHDSDLLVVTEGGFAKR 753

Query: 660 NKLSDFIQINRSGKIAMKLDS--RDE--ILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           + +  +  +   G + +K+ +   D   ++      +E+++L+  + G  VR P++ I  
Sbjct: 754 SAIDTYP-VRGRGGLGVKVANLVEDRGGLVGALKVHEEDEVLVIMESGNIVRIPVAEI-S 811

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV      +GD++I++A  L    D  E        S          E     
Sbjct: 812 RTGRTTQGVTFARPNEGDRIIAVARNLETSLDDAEEAENKSEESGPETAEVPALEAAEQE 871


>gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
 gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580]
          Length = 838

 Score =  729 bits (1882), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/847 (39%), Positives = 500/847 (59%), Gaps = 42/847 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             E   +  +SI +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M +  + ++ 
Sbjct: 6   TPEGGVLIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSG 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA R
Sbjct: 66  PTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ + A  +++D+ KDTVDF PN+D S QEP VL  ++P +L NG  GIAVGMATN
Sbjct: 126 YTEAKMARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATN 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL E+     A IDNPDI +D L + I+GPDFPTG +I G+ GI+ A+ TGRG I+
Sbjct: 186 MPPHNLREIAQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIFGKKGIRQAFKTGRGKIL 245

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +RG  +IE     +E I+ TE+PYQVN  A++ KI EL REK I  IA + DE SDR G 
Sbjct: 246 VRGRFNIEVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGL 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRGA A V+LNQL+  T+LQS F V  +AL G +P+  TL  ++  FVA R+EV
Sbjct: 306 RLVIELKRGAIAKVVLNQLFSKTALQSSFGVINLALVGGRPQTLTLKQLVGYFVAHRQEV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L KA +RAH+L  L +A+ N+DEV++IIR S +  +A+  LM+R        
Sbjct: 366 VTRRVRFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMER-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                 +VQ +AI++++L RLT L  +D+R EL  L + I+   
Sbjct: 418 ------------------FSFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELEVLIEHLK 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           D+L+   ++L +IKQE   + ++    RRT I  + + ++  ED I +E MVV VS+LGY
Sbjct: 460 DLLAHPEKILALIKQETNELAEKFGDDRRTDIVSDEVEEINIEDLIKKEQMVVLVSNLGY 519

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KRVP++ Y+ Q RGGKG +   + ++DF+  +F  STH  ++F ++ G  Y  KV  +P
Sbjct: 520 IKRVPVTAYKRQNRGGKGSNSAALVEDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIP 579

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S  +RG  + ++L+++  E ITTI+   E     ++ Y++ AT  G V++ +   F  
Sbjct: 580 EASRTSRGSHIKSLLAVSSDEEITTIVSLKEFS---SDTYLLMATAGGIVKKVQTDSFQN 636

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               G IA+KLD  D+++S    T +++++L T+ GQ +R   + IR   GR S GV GI
Sbjct: 637 AKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQGQALRVSEAEIRD-QGRASHGVIGI 695

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L+ GD++     + +          Y K +        G       +   +   G +  
Sbjct: 696 RLSGGDELTGALRINNGKLLVMSENGYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVG 755

Query: 788 ERCQELKLKEQFILTVSEKGFGK--RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                    +  I+ ++  G GK  R       +  R+ +G+R  D+        L+ + 
Sbjct: 756 LLAV---ADDDEIVCIT--GQGKTIRVQVSSINVMGRAAQGVRILDI---ESPDQLIGLD 807

Query: 846 PVNDNDQ 852
            V   D+
Sbjct: 808 VVAREDE 814



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 145/419 (34%), Gaps = 38/419 (9%)

Query: 373 TKYLLNKARDRAHVLVGLAIAVA----NLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           T   +   R     L  L   +     + ++++ +I+   N    +    +R+   SD  
Sbjct: 437 TSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGDDRRTDIVSDEV 496

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           + I++ D             L  ++   +   +     G G +      +    +I    
Sbjct: 497 EEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAALVEDDFIDQIF--- 553

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------ 542
              S+   ++ I  +         + P  +R   G            E++   V      
Sbjct: 554 -TASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEITTIVSLKEFS 612

Query: 543 --------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                   +  G VK+V    +  Q    +G   + + + D +    + +    ++  + 
Sbjct: 613 SDTYLLMATAGGIVKKVQTDSF--QNAKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTR 670

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G   +     +     Q R    +  + L+ G+ +T  +         NN  ++  +++
Sbjct: 671 QGQALRVSEAEIRD---QGRASHGVIGIRLSGGDELTGALRI-------NNGKLLVMSEN 720

Query: 655 GNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           G  +R   S+F    +     K+    +   E++ +     +++I+  T  G+ +R  +S
Sbjct: 721 GYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVGLLAVADDDEIVCITGQGKTIRVQVS 780

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +I V  GR + GVR + +   DQ+I + +V   D +           + +  L  GD E
Sbjct: 781 SINVM-GRAAQGVRILDIESPDQLIGLDVVAREDEESITPAASETTFNGELDLDGGDAE 838


>gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 847

 Score =  729 bits (1881), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/855 (37%), Positives = 474/855 (55%), Gaps = 50/855 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   N 
Sbjct: 25  EAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 84

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KC R+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNFGS     PAA R
Sbjct: 85  GYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 144

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 145 YTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVLPSRIPNLLINGSEGIAVGMATR 204

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV D     + NP+   +      ++ I+GPDFPTGA ILGR GI+  Y TGR
Sbjct: 205 IPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGPDFPTGATILGRRGIEETYRTGR 264

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSI  R V ++E+    R  +V TE+PYQVN   +  KIA+LV++ ++  IAD+RDE SD
Sbjct: 265 GSITQRAVVNVEEL-NGRTCLVATELPYQVNPDNLQVKIAQLVKDGQLQGIADIRDETSD 323

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   ++ G +  ++A 
Sbjct: 324 RAGTRIVVVLKRDAVPKVVLNNLYKRTQLQDSFPANMLALVDGVPRTLSIDGFIHYWIAH 383

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + +V+ RRT + L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 384 QVDVIKRRTAFRLAKAQERLHILQGYLAALDALDEVIALIRRSPTAEDARVGLM------ 437

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 438 --------------------DFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 477

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+ +EL  + D+    R+T IV    +M  ED I  ED+VVT++ 
Sbjct: 478 ADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDLIPEEDVVVTITR 537

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY KR  +  YR+Q RGGKG  G  +R+ED V   F  S+H  +LFF++ G VY+ K +
Sbjct: 538 GGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGRVYRAKAY 597

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++         +  Y+V AT+ G V++ +L+D
Sbjct: 598 EIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFA---DKDYLVLATRLGFVKKTRLTD 654

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPI--SAIRVFA 717
           +      G IA+KL        D+++S       +D++L ++ GQ +RF      +R   
Sbjct: 655 YDTNRTGGLIAIKLREDSAGEADQLVSACLADATDDLILVSRHGQSLRFNACDEQLRPM- 713

Query: 718 GRNSVGVRGISLAKGDQVISMAIV-LHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR + GV G+     D++++M +V   AD        Y K  +     + G       + 
Sbjct: 714 GRATSGVTGMRFRADDELLTMDVVRPEADLFVVTEGGYAKRTALSEYRVQGRGGLGIKVA 773

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N     G++      E   ++  +L +   G   R+   +   + R+ +G+     S+  
Sbjct: 774 NLVEARGDLVGALVTE---EDSEVLVIMAGGKIVRSRVDEVSRTGRNTQGVI---FSRAV 827

Query: 837 EIGALVAVFPVNDND 851
           E   ++A+    DND
Sbjct: 828 EGDKVIAITLNVDND 842



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    AD+ + +   +   +      G+  +    +  +++     E   ++L  +E  +
Sbjct: 473 LEAKVADFKDILARPERQRSIVSEELGEITDKWGDERKTTIVPFDGEMSMEDLIPEEDVV 532

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  G+ KRT    +R  +R GKGI+   + + +++      F  + +D ++  ++ G
Sbjct: 533 VTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEH---FFTTSSHDWLLFFTNFG 589

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            + R    EI    R +KG  + +      DER+  V ++      D
Sbjct: 590 RVYRAKAYEIPEGGRDSKGQHVANLLAFQPDERIAQVLQVSSFADKD 636


>gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group]
 gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group]
          Length = 872

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/935 (36%), Positives = 514/935 (54%), Gaps = 125/935 (13%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + KCAR+ GEV+GK+HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK- 148
           ++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTECRL     F   D+   
Sbjct: 61  DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLD-VGCFFFLDIDAI 119

Query: 149 ---DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
                VDF PN+D S +EP +L AR P++L+NG  GIAVGMATNIP HNLGE+VD    +
Sbjct: 120 FIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLSVM 179

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE--KTSGDR 263
           I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +V+RG + IE       R
Sbjct: 180 IENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRVVMRGKTDIETIDVKSKR 239

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR G RVVIELKRGA   ++
Sbjct: 240 SAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADPAIV 299

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V+ RR ++ L++A +R
Sbjct: 300 LNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFIDFRCSVIERRARFKLSQALER 359

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            H++ G+ I + NLD V++IIR + N   AR  L++                        
Sbjct: 360 KHIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE----------------------- 396

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS-------- 495
                LS+ Q  A+L++ L +LT L R    +E  SL  EI +  ++LS++         
Sbjct: 397 ---FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVD 453

Query: 496 --------------------RLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIV 534
                                L  +I QE   +K++  TPRR+ I +    +++D D I 
Sbjct: 454 GLDYLRAEINVVIRELKLMWSLFKLILQEATDLKNKFATPRRSFIEDSASTEVDDLDIIP 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+M++ +S  GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS 
Sbjct: 514 NEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSD 573

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +
Sbjct: 574 KGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG---EDQYLVMLTVN 630

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G +++  L+ F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R
Sbjct: 631 GYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLR 690

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV  + L +GD++ SM I+     +  E    ++ +S               
Sbjct: 691 AL-GRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSP-------------- 735

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                   ++L +++ G GKR     FR  N +  G++   +  
Sbjct: 736 -----------------------PWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPP 772

Query: 835 INEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                +L AVF V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++    
Sbjct: 773 DC---SLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLE 829

Query: 887 KDERVVSVERI-----------RESEIVDEAESTE 910
              ++ S   I             + ++ EAE  E
Sbjct: 830 HAGKIQSASLISAAEEEEEQDPESASLISEAEEPE 864



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 95/256 (37%), Gaps = 26/256 (10%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  +V ++  GY+K+VPL+ + A R  G     + +   D +  +        V   S 
Sbjct: 620 EDQYLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQ 677

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY------- 647
            G V      +L     + RG   +  + L +G+++ ++   P    +    Y       
Sbjct: 678 NGMVIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLS 734

Query: 648 ---VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQEN 694
              ++F   +G  +R  L+ F     NR G    KL     + +V             + 
Sbjct: 735 PPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDE 794

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++L ++ G   R  +  I     R++ GV  + L    ++ S +++  A+ + ++    
Sbjct: 795 QVVLVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPES 853

Query: 755 MKHMSAQRRLISGDTE 770
              +S        D E
Sbjct: 854 ASLISEAEEPEKQDPE 869


>gi|219113333|ref|XP_002186250.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583100|gb|ACI65720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 818

 Score =  728 bits (1880), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/898 (35%), Positives = 480/898 (53%), Gaps = 104/898 (11%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA+++I+GRAIPD RDGLKPVHRRIL+ M Q+ +  N  + KCAR+ GEV+GK+HPHG
Sbjct: 1   MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGK 148
           + A+YDAL R+AQ +S    LI+G GNFGS+D DP AA RYTECRL K +   LL+DL  
Sbjct: 61  DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPAAAMRYTECRLTKLSQAALLEDLQD 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PN+DG+  EP VL A+ P +L+NG  GIAVGMATNIP HNL E++  C A++  
Sbjct: 121 DTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVKA 180

Query: 209 PD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-- 262
                 +    L++++ GPDFPTGA IL   G +  Y TG G IV+R V+ IEK +    
Sbjct: 181 RQGGAAVTDKKLLQMVPGPDFPTGASILSTGGTEKLYTTGNGGIVMRAVTKIEKITTGRK 240

Query: 263 ----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R  I+VTE+PYQVNKAA+LEKIA LV EK++  IADLRDESDR G RVVIELKR A
Sbjct: 241 SSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDGIRVVIELKRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYK--------PERFTLIGILKAFVAFREEVVV 370
            A V+LN LY+ T LQ+ FS N +AL            P+RFTL   +  F+ FR E + 
Sbjct: 301 VAAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRFETIR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R++++ L K   R+H++ GL +A+  +D V++I+R S + + AR  L             
Sbjct: 361 RKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREAL------------- 407

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                           +  S  QT AIL+L+L +LT L +  + +E   L    +    +
Sbjct: 408 -------------YIELGTSSEQTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHL 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           L     +  ++++E + +       R++ I+ E   D  D D I     V+ V+  GY+K
Sbjct: 455 LEVDDAVYDVMREEFIDMMKRFGGERKSSIIVEDDGDFCDMDLIENSRSVIVVTRGGYIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVM---RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           R+PL  + +Q RG +G+ G        +  V   F  + H ++L  +  G  Y  + +++
Sbjct: 515 RMPLKTFESQGRGTRGKRGTSDGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQV 574

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           PI    A+G+ + ++L +   E IT I+P  E     +  YVV  T+ G ++R  L  F 
Sbjct: 575 PIAGRTAKGQPIPSVLPVRGDEVITAILPVSEFS---DEEYVVLTTEQGWIKRTPLDAFE 631

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +++  G     L+  D +        E+DIL+ T  G   RF  + +R   GR S GVR 
Sbjct: 632 KLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGGMATRFGAAKLRP-TGRTSRGVRA 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +GD +  M ++                                             
Sbjct: 691 MKLREGDTIADMNVLS-------------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +++ILTV+ +G+GKR ++ +FR   R G G+ A    +  E   +  +  
Sbjct: 707 -------GKNKEYILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRI 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V D+++I++++ +G ++R   ++I    R+  GV++      + + SV  + + E +D
Sbjct: 760 VKDDEEILVITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSIVPQYEEID 817


>gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 858

 Score =  727 bits (1876), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/854 (38%), Positives = 477/854 (55%), Gaps = 50/854 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRR+++ M   G   N 
Sbjct: 22  EVEASRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNG 81

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ G+V+G +HPHG++++YDALAR+ Q WS+R  L+ GQGNFGS     PAA+R
Sbjct: 82  GFSKCARVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQR 141

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 142 YTECKMAPLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 201

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL E+ D  +  ++NP+   + L    M+ I+GPDFPTGA ILGR GI++ Y TGR
Sbjct: 202 IPPHNLREIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 261

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSIV R V ++E+    R  +V TE+PYQVN   +L KIA+L ++ ++  IAD+RDE SD
Sbjct: 262 GSIVQRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 320

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   +L G +  +V  
Sbjct: 321 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 380

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +  V+ RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 381 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLM------ 434

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 435 --------------------DLLSVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 474

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+  EL  + ++    R+T IV    +M  ED I  EDMVVT++ 
Sbjct: 475 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 534

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR  +  YR+QRRGGKG  G  +R++D V   F  S+H  +LFF++ G VY+ K +
Sbjct: 535 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 594

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++     E   +  Y+V ATK G V++  L+D
Sbjct: 595 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFE---DKEYLVLATKRGFVKKTHLTD 651

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFA 717
           +      G IA+KL        D+++S        D++L ++ GQ +RF  S   +R   
Sbjct: 652 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPM- 710

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR++ GV G+     D++++M +V    D        Y K        + G       + 
Sbjct: 711 GRSTSGVTGMRFRDDDELLTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVA 770

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N     G +       +  +E  +L +   G   R+   +   + R+ +G+     S+ +
Sbjct: 771 NLVEARGKLV---GALVTDEESEVLVIMAGGKIVRSRVDEVSKTGRNTQGVI---FSRAD 824

Query: 837 EIGALVAVFPVNDN 850
               ++AV    DN
Sbjct: 825 GDDRVIAVTLNVDN 838



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    AD+ + +   +   A       +     + +  +++     E   ++L  +E  +
Sbjct: 470 LEAKVADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMV 529

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  GF KRT    +R   R GKG++   + + +++      F  + +D I+  ++ G
Sbjct: 530 VTITRGGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEH---FFTSSSHDWILFFTNFG 586

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            + R    EI    R +KG  + +      +ER+  V  I   E  +
Sbjct: 587 RVYRAKAYEIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFEDKE 633



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 58/220 (26%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M++      +           + + R+ +  ++         +      +          
Sbjct: 517 MSVEDLIPEEDMVVTITRGGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSH 576

Query: 798 QFILTVSEKGFGKRTSSYDFR--------------------------------------- 818
            +IL  +  G   R  +Y+                                         
Sbjct: 577 DWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFEDKEYLV 636

Query: 819 -ISNRS--------------GKGIRATDVSK--INEIGALVAVFPVNDNDQIILVSDKGT 861
             + R                 G+ A  + +    E   LV+    +D + +ILVS  G 
Sbjct: 637 LATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQ 696

Query: 862 LIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +R   ++  +R   R+T GV       D+ +++++ +R 
Sbjct: 697 SLRFTASDDQLRPMGRSTSGVTGMRFRDDDELLTMDVVRP 736


>gi|160331337|ref|XP_001712376.1| gyrA [Hemiselmis andersenii]
 gi|159765824|gb|ABW98051.1| gyrA [Hemiselmis andersenii]
          Length = 877

 Score =  726 bits (1874), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/907 (34%), Positives = 499/907 (55%), Gaps = 88/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  +  E    I +  +  EM  SY+ YA++VI GRA+PD+RDG+KPVHRRILF M
Sbjct: 45  MSK-IEGNAPESLGKIITTDLNSEMSRSYMEYAMSVIYGRALPDIRDGMKPVHRRILFAM 103

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  +  + KCAR+ GEV+GKYHPHG+ A+YDAL RMAQD+S+R +LI G GNFGS+
Sbjct: 104 NELGLNPDTPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSILISGHGNFGSI 163

Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTEC++ K +   LL D+GK T D+  N+DGS  EP VL +  P +L+NG 
Sbjct: 164 DHDPPAAMRYTECKISKLSKEILLKDIGKKTTDYINNFDGSCYEPSVLPSMLPTILLNGS 223

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNL E++     +I+ P +    L+++I  PDFPTG  ILG  G   
Sbjct: 224 SGIAVGMATNIPPHNLTEILRAVDGLIEEPQMSEKKLLKLIPAPDFPTGGSILGLQGCSK 283

Query: 240 AYATGRGSIVIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            Y  G+GSI++RG +H E        +R  I++TE+P+Q+NKA+++ KIAELV EK +  
Sbjct: 284 LYKNGQGSIIVRGKTHFETILNYNRNERTAIIITELPFQLNKASLITKIAELVNEKILDG 343

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I DLRDESDR G R+VIELK+  + +VILN L++ T LQ+ F  +++AL G +P   +L 
Sbjct: 344 IVDLRDESDRNGIRIVIELKKDTNKEVILNNLFKKTPLQTSFGGHILALVGQQPATLSLK 403

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  F+ FR++ + RR ++ LN + ++ H++ GL + + +++ +++++R S N   A+ 
Sbjct: 404 ELLLLFIQFRKKTIRRRLQFELNDSIEKNHLIKGLILTLNSIEFILKVVRQSKNNTEAKI 463

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+                             L++ Q+ AIL ++L RLT L  + + N
Sbjct: 464 ILMES---------------------------GLTQNQSDAILNIQLRRLTRLESNKLNN 496

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E   L   IK     L+    L   IK++L  +      PRRT +V        ++  + 
Sbjct: 497 EYEILNNTIKNLKKPLALPEELSKNIKKDLFEISILFGMPRRTNVVHSETSGSIDEMEMI 556

Query: 536 ED-MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           ++   + +    ++KR+ +  +  Q RG +G+ GV+++++D ++  F  + H ++L  S 
Sbjct: 557 DNHATIVMVTKFFIKRMVVETFEPQTRGTRGKKGVMIQEDDEISHFFSCNNHDTILCISQ 616

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  +  + +++PI    A+G AL  +L      +I++I+P        +  Y++  TK+
Sbjct: 617 NGIAFAFRAYQIPISRRTAKGVALSAVLPNITTGKISSIIPVSVFS---SEKYLILLTKN 673

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISA 712
           G +++  L  F  I   G   +K+   DE+  V  C+ E+ IL++TK G+ +RF      
Sbjct: 674 GMIKKTPLIAFKNITARGLTVLKVGEEDELCWVRKCSLEDSILISTKNGKALRFLTNEKQ 733

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GRNS GV+ I++ K D +I M ++  +                            
Sbjct: 734 LRA-TGRNSKGVKSITIEKNDTIIDMDVLSTSKT-------------------------- 766

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                K ++ +IL +++ GFGK+ +  DFRI NR GKG+    +
Sbjct: 767 ---------------------KHQDCYILAITKNGFGKKINHSDFRIQNRGGKGVTVIKL 805

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K +    L+++       +I++ +  GT++R  +  I I  +  +GV++    + + V 
Sbjct: 806 QKKD-NDELLSLRFCVKEQEILMSTKNGTILRQKIEAITIQKKNARGVIVQKLMEGDYVS 864

Query: 893 SVERIRE 899
            V  I E
Sbjct: 865 KVSLISE 871



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 92/270 (34%), Gaps = 58/270 (21%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQ 692
              E E   N+  +V  TK   ++R  +  F    R   GK  + +   DEI    +C  
Sbjct: 549 SIDEMEMIDNHATIVMVTKF-FIKRMVVETFEPQTRGTRGKKGVMIQEDDEISHFFSCNN 607

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + IL  ++ G    F    I   + R + GV                            
Sbjct: 608 HDTILCISQNGIAFAFRAYQI-PISRRTAKGVAL-------------------------- 640

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                S    +   G IS      +   E++++ +++ G  K+T
Sbjct: 641 ---------------------SAVLPNITTGKISSIIPVSVFSSEKYLILLTKNGMIKKT 679

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--I 870
               F   N + +G+    V +      L  V   +  D I++ +  G  +R   NE  +
Sbjct: 680 PLIAF--KNITARGLTVLKVGE---EDELCWVRKCSLEDSILISTKNGKALRFLTNEKQL 734

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRES 900
           R   R +KGV   +  K++ ++ ++ +  S
Sbjct: 735 RATGRNSKGVKSITIEKNDTIIDMDVLSTS 764


>gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
 gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1]
 gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16]
          Length = 857

 Score =  725 bits (1871), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/854 (38%), Positives = 474/854 (55%), Gaps = 50/854 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E E   +  V +  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   N 
Sbjct: 21  EAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPNG 80

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KC R+ G+V+G +HPHG+A++YDALAR+ Q WS+R  L+ GQGNFGS     PAA R
Sbjct: 81  GFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAPR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTEC++   A  ++ D+ +DTVDF  NYDG  QEP VL +R PN+L+NG  GIAVGMAT 
Sbjct: 141 YTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATR 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDAL----MEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           IP HNL EV D     +++P+   + L    M+ I+GPDFPTGA ILGR GI++ Y TGR
Sbjct: 201 IPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATILGRRGIEDTYRTGR 260

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SD 304
           GSIV R V ++E+    R  +V TE+PYQVN   +L KIA+L ++ ++  IAD+RDE SD
Sbjct: 261 GSIVQRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSD 319

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G R+V+ LKR A   V+LN LY+ T LQ  F  NM+AL    P   +L G +  +V  
Sbjct: 320 RAGTRLVVVLKRDAVPKVVLNNLYKRTQLQDAFPANMLALVDGVPRTLSLDGFIHYWVVH 379

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           +  V+ RRT++ L KA++R H+L G   A+  LDEV+ +IR SP  E AR  LM      
Sbjct: 380 QVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLM------ 433

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + + EVQ  AIL L+L RL  L R  I +E   L  ++
Sbjct: 434 --------------------DLLSVDEVQADAILALQLRRLAALERQKILDEHAELEAKV 473

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +  DIL+   R   I+  EL  + ++    R+T IV    +M  ED I  EDMVVT++ 
Sbjct: 474 ADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMVVTITR 533

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+ KR  +  YR+QRRGGKG  G  +R++D V   F  S+H  +LFF++ G VY+ K +
Sbjct: 534 GGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAY 593

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P G   ++G+ + N+L+    ERI  ++     E   +  Y+V ATK G V++  L+D
Sbjct: 594 EIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFE---DKEYLVLATKRGFVKKTHLTD 650

Query: 665 FIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFA 717
           +      G IA+KL        D+++S        D++L ++ GQ +RF  S   +R   
Sbjct: 651 YDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQSLRFTASDDQLRPM- 709

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           GR++ GV G+     D++++M +V    D        Y K        + G       + 
Sbjct: 710 GRSTSGVTGMRFRDDDELLTMDVVRPGADLFVVTEGGYAKRTDLSEYRVQGRGGLGIKVA 769

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           N     G +       +  +E  +L +   G   R+   +   + R+ +G+     S+ +
Sbjct: 770 NLVEARGKLV---GALVTDEESEVLVIMAGGKIVRSRVDEVSKTGRNTQGVI---FSRAD 823

Query: 837 EIGALVAVFPVNDN 850
               ++AV    DN
Sbjct: 824 GDDRVIAVTLNVDN 837



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 70/167 (41%), Gaps = 6/167 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    AD+ + +   +   A       +     + +  +++     E   ++L  +E  +
Sbjct: 469 LEAKVADFQDILAKPERQRAIVSTELAEIANKWADERKTAIVPFAGEMSVEDLIPEEDMV 528

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++  GF KRT    +R   R GKG++   + + +++      F  + +D I+  ++ G
Sbjct: 529 VTITRGGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEH---FFTSSSHDWILFFTNFG 585

Query: 861 TLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVD 904
            + R    EI    R +KG  + +      +ER+  V  I   E  +
Sbjct: 586 RVYRAKAYEIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFEDKE 632



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 58/220 (26%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M++      +           + + R+ +  ++         +      +          
Sbjct: 516 MSVEDLIPEEDMVVTITRGGFAKRTRVDAYRSQRRGGKGVKGAQLREDDQVEHFFTSSSH 575

Query: 798 QFILTVSEKGFGKRTSSYDFR--------------------------------------- 818
            +IL  +  G   R  +Y+                                         
Sbjct: 576 DWILFFTNFGRVYRAKAYEIPEGGRDSKGQHVANLLAFQPEERIAQVLHISSFEDKEYLV 635

Query: 819 -ISNRS--------------GKGIRATDVSK--INEIGALVAVFPVNDNDQIILVSDKGT 861
             + R                 G+ A  + +    E   LV+    +D + +ILVS  G 
Sbjct: 636 LATKRGFVKKTHLTDYDTNRTGGLIAIKLREDPEGEPDQLVSAVLADDTEDLILVSRDGQ 695

Query: 862 LIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +R   ++  +R   R+T GV       D+ +++++ +R 
Sbjct: 696 SLRFTASDDQLRPMGRSTSGVTGMRFRDDDELLTMDVVRP 735


>gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 843

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/900 (38%), Positives = 482/900 (53%), Gaps = 96/900 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRR+L  M +     ++ YVK 
Sbjct: 34  RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEV+G YHPHG++A+Y+ + RMAQ +S+R  LI+GQGNFGSVDGD  AA RYTE R
Sbjct: 94  AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEAR 153

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL D+ K+TV F PN+D + Q+P VL A +PN+LVNG  GIAVGMATNIP HN
Sbjct: 154 LTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHN 213

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E V+  +A+I NPDI L  LM+I+ GPDFPTG  I+G  G+  AYATG+GSI IR   
Sbjct: 214 LKEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKV 273

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            I + +  RE IV+ EIPYQVNK  MLEKI +LV EK I  I+++ D SDR+G RV I +
Sbjct: 274 DIIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHV 333

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A VILNQL++ T LQ  + + M+A+   +P+ F+L  ILK++   R EVVV+RT+
Sbjct: 334 KKDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRTE 393

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA+ RAH+L GL IA+ N+DEV+RIIR S +   A+  LM                
Sbjct: 394 FDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMA--------------- 438

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      T  LSE+Q  AILE+RL RLT L    I +EL  + I I +  DILS  
Sbjct: 439 -----------TFSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKP 487

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRV 551
            R+  II  EL  V       R T I            ED I  E++VV +S   ++KR+
Sbjct: 488 DRVKSIICDELGKVSQSFGNTRTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRL 547

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  +R Q+RGGKG  G+  + EDFV  L    TH +++ FS+ G  +  KV+ LP    
Sbjct: 548 PMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELP---- 603

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                                                  ATK    +            S
Sbjct: 604 --------------------------------------IATKEARGK------------S 613

Query: 672 GKIAMKLDSRDEIL---SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            K  + L + DEI+          E+ +L+ T+ G   +  +     F      G+  I 
Sbjct: 614 LKAVINL-NDDEIITSLFTFRNFDESYLLMVTREGFVKKIQLDE---FTNTKKSGIIAIG 669

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD++I +    +    +      +        L S               + +I+  
Sbjct: 670 LRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRSQGRTASGVTAMKLEDDDSIAGI 729

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              E       +  +SE GFGKRT   +F    R GKG+    + + N  G  V +  V 
Sbjct: 730 TKVEPNTN---LFCISENGFGKRTDFEEFSTKGRGGKGMTYLKIGEKN--GRAVGISSVK 784

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + D++++++  G  IRV V  I +  R+  GV + +T  ++ V     +RES+  D AES
Sbjct: 785 EEDELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDEDFVKDFAVVRESDS-DSAES 843


>gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102]
 gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102]
          Length = 827

 Score =  723 bits (1867), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/905 (35%), Positives = 486/905 (53%), Gaps = 107/905 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   STGQVIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ ++YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATN+
Sbjct: 129 ETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNV 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVDG +A+IDNPD+  + L ++I GPDFPTG  I+G TGI+ AY  G+G I++
Sbjct: 189 PPHNLGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEIIGETGIREAYTIGKGGILL 248

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV+ +E+      S  R  I++TE+PYQVNKAA +EK+A+LV + R+  I+DLRDESDR
Sbjct: 249 RGVATLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR  +   +L  LY  T+LQ  F   ++A+   +P + +L  +L+ F++FR
Sbjct: 309 EGMRVVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQPRQLSLRQLLQEFLSFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + RR  Y L KA+ R H++ GL  A++NLD V+ I+R +P+  TA+  L  +     
Sbjct: 369 EETLNRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + LSEVQ  AIL + L RLT L + +++ E   +  +I 
Sbjct: 424 ---------------------LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQIS 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-----------CIV 534
               +L+ R  LL  +K++L S+K +   PRRT+I E      +E               
Sbjct: 463 LLEQLLNDRRELLKALKKDLRSLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEP 522

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+ ++  +  GYV+R        Q  G K ++   + D DF+    +  T   +L  + 
Sbjct: 523 AEEAILEFTQRGYVRR-------TQPSGRKSKAENGLHDNDFIIQTVLTDTQKDLLILTG 575

Query: 595 LGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
            G VY   V  +P  +    RGK LI +LS         ++       +     ++  TK
Sbjct: 576 GGKVYPVNVGEIPPTTGRSPRGKPLITMLSNTAQGAQEAVVSRFLLPDNLETQQMILLTK 635

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G ++R  L +F  + R G   +KL   DE+   +       ++L +  G+ +RF  +  
Sbjct: 636 QGRIKRLSLGEFTNLTRRGITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDE 695

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +    GR ++G++   L K  Q++    V                               
Sbjct: 696 QLPIMGRTAMGLQAFRLLKNQQMVGCVTV------------------------------- 724

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                  K+  +L V+++G+ KR ++   R +NR   G +A   
Sbjct: 725 ----------------------GKDDHLLLVTQEGYAKRMAASQLRAANRGDLGTQALKF 762

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
              ++   L  +     + ++ LV++K  ++R+PV  + I  R  KG  I    +DE+++
Sbjct: 763 --ASKTDNLAGMVIAIASGEVALVTNKERVVRIPVETVPILGRDVKGESIIQLNRDEKII 820

Query: 893 SVERI 897
           +V  +
Sbjct: 821 TVAEV 825



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 86/257 (33%), Gaps = 58/257 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+ G VRR + S      R  K    L   D I+       + D+L+ T  G+   
Sbjct: 527 ILEFTQRGYVRRTQPSG-----RKSKAENGLHDNDFIIQTVLTDTQKDLLILTGGGKVYP 581

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  I    GR+  G   I++                                      
Sbjct: 582 VNVGEIPPTTGRSPRGKPLITMLSN----------------------------------- 606

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKG 826
                       + E  +S     +    +Q IL ++++G  KR S  +F  ++ R    
Sbjct: 607 --------TAQGAQEAVVSRFLLPDNLETQQMIL-LTKQGRIKRLSLGEFTNLTRRG--- 654

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFS 884
                + K+ +   L         + +IL S  G ++R   N+  + I  R   G+  F 
Sbjct: 655 ---ITILKLKDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGRTAMGLQAFR 711

Query: 885 TAKDERVVSVERIRESE 901
             K++++V    + + +
Sbjct: 712 LLKNQQMVGCVTVGKDD 728



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 85/214 (39%), Gaps = 17/214 (7%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               ++ ++  G +KR+ L  +       +G + + ++D+D ++          ++  SS
Sbjct: 626 ETQQMILLTKQGRIKRLSLGEF--TNLTRRGITILKLKDDDELSFTQFTKPGEHLILASS 683

Query: 595 LGFVYKEKVWRL--PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            G V +        PI    A G   +    L + +++   +          + +++  T
Sbjct: 684 GGRVLRFATNDEQLPIMGRTAMG---LQAFRLLKNQQMVGCVTVG------KDDHLLLVT 734

Query: 653 KHGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFP 709
           + G  +R   S     NR      A+K  S+ D +  +       ++ L T   + VR P
Sbjct: 735 QEGYAKRMAASQLRAANRGDLGTQALKFASKTDNLAGMVIAIASGEVALVTNKERVVRIP 794

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           +  +    GR+  G   I L + +++I++A V  
Sbjct: 795 VETV-PILGRDVKGESIIQLNRDEKIITVAEVRS 827


>gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
 gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219]
          Length = 828

 Score =  723 bits (1865), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/842 (38%), Positives = 498/842 (59%), Gaps = 36/842 (4%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +  +   IT   ++ E++  +L Y+++VI+ RA+PD+RDGLKPV RRILF M +M   
Sbjct: 10  DENNFDPGHITETELSKEIRRDFLEYSMSVIVARALPDVRDGLKPVQRRILFAMNEMNNG 69

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y KCARI G+ MGKYHPHG+++IY AL  MAQ+W++R  L++G GNFGS+DGD  A
Sbjct: 70  PDKPYRKCARIVGDTMGKYHPHGDSSIYGALVYMAQNWNMRETLVDGHGNFGSMDGDGAA 129

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K +  +L DL KDTVD   NYDG  +EP+VL AR+PN+LVNG  GIAVGM
Sbjct: 130 AMRYTEARMSKISVEILRDLEKDTVDMMDNYDGEEKEPMVLPARFPNLLVNGSSGIAVGM 189

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL E +D  +A ++NP+I +  LM+ ++GPDFPTG  ILGR+GI+ A+ TGRG
Sbjct: 190 ATNVAPHNLKETIDAVIAYMENPEISVTELMQFMKGPDFPTGGYILGRSGIRKAFETGRG 249

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SIV+R  +H E+ +  + +IVV EIPY VNKA+++E+I  L REK I  I DLRDES+ +
Sbjct: 250 SIVMRAKTHFEEMANGKMRIVVDEIPYMVNKASLVERIGTLTREKLIDGITDLRDESNMK 309

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL++   A+V+LNQLYR T+LQS F VN V L    P    +  +LK ++ F+ 
Sbjct: 310 GIRVVVELRKDVQAEVVLNQLYRMTALQSNFGVNNVVLFDGAPRLAGMKELLKGYIDFQL 369

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RRT + L KA+DRAH+L GL IAV  LDEV+  IR S + + A   LM +      
Sbjct: 370 EVIRRRTAFELKKAKDRAHILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNK------ 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q +AIL+++  RLTGL RD I NE   L ++I +
Sbjct: 424 --------------------FPLDEIQAKAILDMQFRRLTGLERDKIENEYQDLLLKIAD 463

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+ + R++ I+K EL  +K +  +PRR+ I++   +MEDED I  ED++VT+S  G
Sbjct: 464 YEDILAHKERVIDIVKNELTEIKAKYGSPRRSEIIDADAEMEDEDLIPVEDIMVTLSTNG 523

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+  + Y  Q RGGKG  G+ +  +D +  +  +STH  +L F++ G V++ + + +
Sbjct: 524 YVKRLTTNTYSVQNRGGKGIKGMDLNKDDSIESVINMSTHDFLLLFTNKGRVFRLRGFNI 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P  S  ++G  +IN++++++ E++  ++P  +++      ++ F TK G V+R  +S+F 
Sbjct: 584 PNFSRTSKGIPIINLVNMDKDEKVKAMVPVKKND--EQTKFLFFVTKKGIVKRTAISEFE 641

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            I ++GK A+ L+  D++  V+    + ++L+    G+ VR     +R   GR++ GV+G
Sbjct: 642 NIMKNGKKAILLNEDDQLAFVKPTDGQAEVLIAGANGKAVRILEDKVRP-QGRSAHGVKG 700

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +   G  V+   +    +      +                T   +     + +     
Sbjct: 701 FN-TDGSSVVG--VATTLEGFNVLTVTEKGIGKVSSIASFRLTNRGSKGVKAAKINEKTG 757

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
           +    +    +Q ++ ++E G   R S      S+RS  G+    V    +   +  V  
Sbjct: 758 DLISMKAVSDDQDVMIMTEGGIVIRISLDQIAESSRSSMGVHLIRV----DQDKVSTVAI 813

Query: 847 VN 848
           V+
Sbjct: 814 VD 815


>gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064]
          Length = 807

 Score =  722 bits (1863), Expect = 0.0,   Method: Composition-based stats.
 Identities = 337/803 (41%), Positives = 487/803 (60%), Gaps = 33/803 (4%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG+ A+Y  + RMAQ
Sbjct: 1   PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+S R +L++G GNFGSVDGD  AA RYTE R+ K +  LL D+ KDT+D+  NYDGS +
Sbjct: 61  DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EPV+L AR+PN+LVNG  GIAVGMATNIPTH+LGEV+DG +A+  +PDI +  LME I G
Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPT  +I+GR+GI+ AY +GRGSI +RG   IE+    +E IV+TEIPYQVNKA ++E
Sbjct: 181 PDFPTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVE 240

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           +IAEL REK+I  I  L DESDR G R+VIE++R  SA VI+N L++ T+LQ+ F +NM+
Sbjct: 241 RIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINML 300

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL IA+ N+D +++
Sbjct: 301 ALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIK 360

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR S   + A+  LM +                            LS+ Q +AIL++RL
Sbjct: 361 LIRGSKTSDVAKEGLMTQ--------------------------FNLSDKQAQAILDMRL 394

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K +    RRT I+ 
Sbjct: 395 QRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILA 454

Query: 523 GLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           G L   EDED I  E++ +T++  GY+KR+PLS YR+QRRGG+G  G+   ++DFV  L 
Sbjct: 455 GDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLV 514

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             STH ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  ++   E   
Sbjct: 515 ATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFT- 573

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
             ++ Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+      ++++ TK
Sbjct: 574 --DDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATK 631

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ + FP   IRV  GR + GVRGI L + D+VI M ++   +             +  
Sbjct: 632 HGQSIYFPEENIRVM-GRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPA 690

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
            +    +   +       + +             ++  ++TVS  G   R        + 
Sbjct: 691 SQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTG 748

Query: 822 RSGKGIRATDVSKINEIGALVAV 844
           RS  G++   + +  ++  +  V
Sbjct: 749 RSAMGVKLIRLDEDEKVATVAKV 771



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 350 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 400

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 401 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 460

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 461 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 517

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 518 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 575

Query: 906 A 906
           +
Sbjct: 576 S 576


>gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
 gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155]
          Length = 859

 Score =  721 bits (1861), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/845 (37%), Positives = 498/845 (58%), Gaps = 36/845 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S ++++   +T   I   + ++YL Y+++V +GRAIPD+RDGLKP  RR+LF M ++ +
Sbjct: 1   MSDNQQDFSTVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
                Y+KCAR+ G+V+GKYHPHG+ ++YD + RMAQD+S+R +LI+GQGNFGS+DGD  
Sbjct: 61  RKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTECR+++ A  LL DL K+TVD +P +DGS  EP VL ARYPN+LVNG  GI VG
Sbjct: 121 AAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MAT+IP HNLGEV++  VA++D P I ++ +M+ + GPDFPT  + +G  GI+  Y TGR
Sbjct: 181 MATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGFDGIRRLYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +RG + I +    REQIV+TEIPY VNK  M++KIAELV  K I  I+ L DES  
Sbjct: 241 GGVHLRGRAEIIE-KNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSS 299

Query: 306 Q-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G RVV+ +K  A A V++NQLY++T L        + ++  +P+   L  +L+A++  
Sbjct: 300 RVGIRVVVGIKTNAMATVVINQLYKHTQLAVSIGCQFLVVDNKQPKTLNLKQLLQAYLDH 359

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R EV+ RR K+ L KA  RAH+L GL  AV ++DEV++IIR S N E A  +L +R    
Sbjct: 360 RLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKER---- 415

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS  Q +AIL++RL++LTGL  D++  E   L   I
Sbjct: 416 ----------------------FELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRI 453

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
               ++L++R   L ++K+EL+ V+D+    RRT +  G  D+  ED I R    +T+S+
Sbjct: 454 AHYRELLANRQMRLDVVKEELIEVRDKFADERRTEMRPGERDINYEDLIARASATITISN 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KRVP  +YR Q RGGKG  G+  +D+DFV  L    TH  ++FF++ G ++  KV+
Sbjct: 514 EGYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVY 573

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P  +  ++GKA++N+L   +GE +  ++    D+    + +++ +T++G V++  L+ 
Sbjct: 574 DIPEATRVSKGKAMVNLLEFEKGEYVRAMISV--DKVDDEDRFIMMSTRNGVVKKTALAA 631

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           F  + +    A+ LD  D+++  +       I+L+T+ G    F  S  R   GR + G 
Sbjct: 632 FKNMRKKPIKAIVLDEDDDLIEAKLTDGNKKIILSTREGIACHFKESDCRT-QGRVTRGC 690

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           RGI L++ DQV++M+IV  ++         M   S         T+       +  ++  
Sbjct: 691 RGIRLSESDQVVAMSIVEESEDILVVTAKGMGKRSCV--DDYRLTKRGAKGVRNIKLKEG 748

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   ++  ++ I+T + +G   R S+   R   R+ +G+      K +++  +++ 
Sbjct: 749 DYVVEVMMIEDTDEIIMT-TMEGLMVRISAEPIRSLGRASQGVTIMKFKKASDL--IISA 805

Query: 845 FPVND 849
             V +
Sbjct: 806 SRVVE 810



 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 102/260 (39%), Gaps = 10/260 (3%)

Query: 649 VFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +  +  G ++R     +   NR   G   M+    D +  + T    + I+  T  G+  
Sbjct: 509 ITISNEGYIKRVPTEIYRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMH 568

Query: 707 RFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
              +  I     R S G   ++L    KG+ V +M  V   D +    +   ++   ++ 
Sbjct: 569 WLKVYDIPEAT-RVSKGKAMVNLLEFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKT 627

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
            ++              ++ +      +     ++ IL+ + +G        D R   R 
Sbjct: 628 ALAAFKNMRKKPIKAIVLDEDDDLIEAKLTDGNKKIILS-TREGIACHFKESDCRTQGRV 686

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +G R   +S+      +VA+  V +++ I++V+ KG   R  V++ R+  R  KGV   
Sbjct: 687 TRGCRGIRLSE---SDQVVAMSIVEESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNI 743

Query: 884 STAKDERVVSVERIRESEIV 903
              + + VV V  I +++ +
Sbjct: 744 KLKEGDYVVEVMMIEDTDEI 763


>gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 810

 Score =  720 bits (1858), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/887 (34%), Positives = 468/887 (52%), Gaps = 89/887 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 3   ENFLPAFLEEVVGDRFGRYSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+++IY+ + RMAQ W +   LI+G GN+GS D DP AA RYTE 
Sbjct: 63  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TV F+ N+D + +EPVVL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSAIAMELLRDIEKRTVPFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D C+A+++ P++ L+ +   ++GPDFPTG +I+G  GI+ AY TG+G I +R  
Sbjct: 183 NLREVIDACIALMEKPEMTLEEIRLFVKGPDFPTGGIIMGEEGIREAYETGKGRIYLRSK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R G R+V+E
Sbjct: 243 TEIETLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVVE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  IL  L + T LQ  ++ NMVA+    P +  L  +L+A++A + EVV  RT
Sbjct: 303 LKKDADAQGILAYLLKKTDLQVTYNFNMVAIVNKAPRQLGLKAMLEAYIAHQREVVTYRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L K  DRAHVL GL  A+  LDEV+  I+ S N + A+  L                
Sbjct: 363 QYELEKLEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL---------------- 406

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AIL L+L RLT L    ++ EL  +  +I     IL S
Sbjct: 407 ----------QWMFGFTERQADAILTLQLYRLTNLEITTLQKELEDIQKKITVLRGILES 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +L+ +IK+EL+ ++D+    RR+ I + +    +  E  + +ED++VT+S  GY+KR 
Sbjct: 457 DKKLIALIKRELIEIRDKYGIDRRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +    R G  R G  +++ D++  L  V T  ++L F+  G  +   V ++P    
Sbjct: 517 SMLSF---TRSGGERDGSGVKEGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G A++N++ L + +RI +++P    + +   L +VF TK+G V+R +L ++ +    
Sbjct: 574 KDNGTAIVNVIPLAKEDRIVSVIPVKSFDENPE-LSLVFVTKNGQVKRTELKEYEKKRSG 632

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A K+   DE+LSV       +ILL TK G  +RF    +    GR S GVRGI+L  
Sbjct: 633 AVAACKVGDGDEVLSVTVSRNNQEILLLTKQGMAIRFAEDEVNPM-GRVSAGVRGINLKD 691

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D+V+S   V   + +                                            
Sbjct: 692 DDEVVSALWVEGEEGE-------------------------------------------- 707

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE----IGALVAVFPV 847
                   +L VS+  + KR+   D+ + +R GKG++  +  +          LV     
Sbjct: 708 --------VLVVSDLAYAKRSLLLDYPVQSRGGKGVQTFEFKEGKRVKPNGSRLVGGVHC 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +   +  V+ +G +      +  IA R + G  + S  K++ +V +
Sbjct: 760 KEPVLLQAVTKEGQMHTFSSEDAPIADRKSIGKAMMSVDKNDEIVDL 806



 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 90/258 (34%), Gaps = 56/258 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  ++ G ++R  +  F +     +    +   D I  +       ++L+ T+ GQ   
Sbjct: 504 LVTISREGYIKRTSMLSFTRS-GGERDGSGVKEGDYIKYLLEVDTLQNLLIFTQRGQYFL 562

Query: 708 FPISAIRVFAGR--NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  I  F  +   +  V  I LAK D+++S+  V   D +                  
Sbjct: 563 LPVHQIPEFKWKDNGTAIVNVIPLAKEDRIVSVIPVKSFDENP----------------- 605

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                          E  ++ V++ G  KRT   ++        
Sbjct: 606 -------------------------------ELSLVFVTKNGQVKRTELKEYEKKRSGA- 633

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + A  V        +++V    +N +I+L++ +G  IR   +E+    R + GV   + 
Sbjct: 634 -VAACKVGDG---DEVLSVTVSRNNQEILLLTKQGMAIRFAEDEVNPMGRVSAGVRGINL 689

Query: 886 AKDERVVSVERIRESEIV 903
             D+ VVS   +   E  
Sbjct: 690 KDDDEVVSALWVEGEEGE 707



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 13/150 (8%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +R LI    +     ++    E    +   + L  +E  ++T+S +G+ KRTS   F  S
Sbjct: 465 KRELIEIRDKYGIDRRSHIQDEVEELKVNLEVLVAQEDVLVTISREGYIKRTSMLSFTRS 524

Query: 821 N--RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R G G++        E   +  +  V+    +++ + +G    +PV++I        
Sbjct: 525 GGERDGSGVK--------EGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDN 576

Query: 879 G---VVIFSTAKDERVVSVERIRESEIVDE 905
           G   V +   AK++R+VSV  ++  +   E
Sbjct: 577 GTAIVNVIPLAKEDRIVSVIPVKSFDENPE 606


>gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 858

 Score =  720 bits (1857), Expect = 0.0,   Method: Composition-based stats.
 Identities = 323/838 (38%), Positives = 466/838 (55%), Gaps = 41/838 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  V +  EMQ SYL YA++VI+GRA+P++RDGLKPVHRR+++ M   G   +K + 
Sbjct: 14  HGKIDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYAMFDGGYRPDKAFS 73

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+VMG++HPHG++AIYDAL R+ Q WSLR  L  GQGNFGS   D  AA RYTE
Sbjct: 74  KCARVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTE 133

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++   A  ++ D+ +DTVDF+ NYDG  QEP VL +R+PN+LVNG  GIAVGMATNIP 
Sbjct: 134 TKMAPLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGSVGIAVGMATNIPP 193

Query: 193 HNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNL EV  G +  + +P+      L+ L++ I+GPDFPTGA ILG  GI++ Y TGRGSI
Sbjct: 194 HNLREVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQILGVKGIQDTYRTGRGSI 253

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
            IR V  IE+    R  +VVTE+PYQVN   +  KIAELV++ R+  IAD+RDE S R G
Sbjct: 254 TIRAVVSIEEIQ-GRVCLVVTELPYQVNPDNLAIKIAELVKDGRVGGIADIRDETSGRTG 312

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI LKR A A V+LN LY++T LQ  F  NM+A+    P    L G + A+V  + E
Sbjct: 313 QRLVIVLKRDAVAKVVLNNLYKHTQLQENFGANMLAIVDNVPRTLALDGFITAWVDHQIE 372

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+VRRT++ L KA +RAH+L G   A+  LDEV+ +IR S   + AR             
Sbjct: 373 VIVRRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDEARE------------ 420

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                         G    + + ++Q  AIL ++L RL  L R  I +E + +  +I E 
Sbjct: 421 --------------GLKSLLEVDDIQADAILAMQLRRLAALERQKIIDEHDEIERQITEF 466

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
             IL+  +R   I+ +EL  + D     RRT I+     DM  ED I  E+MV+TV+  G
Sbjct: 467 KAILADSARQRSIVSEELTEIVDRFGDDRRTEIMLGFDGDMSLEDLIPEEEMVITVTRGG 526

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR     YR+Q RGGKG  G  +R ED V   F+ +TH  +LFF+  G VY+ K + +
Sbjct: 527 YIKRTRSDNYRSQHRGGKGVKGAQLRGEDVVDHFFVTTTHHWLLFFTKKGRVYRAKAYEV 586

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                 A+G+ + N+L+L   E I  I+   + E      Y+V AT+ G +++  L ++ 
Sbjct: 587 QEAGRDAKGQHVANLLALQPDEEIAEILDIRDYEV---AQYLVLATRDGLIKKTALREYD 643

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGV 724
                G IA+KL   DE++S     +++D+LL ++ G  +RF  +   +R   GR++ GV
Sbjct: 644 TNRSGGIIAIKLRDEDELVSALLVEEDSDLLLVSRKGMSIRFTATDEAMRPM-GRSTSGV 702

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            G+     D ++  ++V      +          +A  +    +   +       S +  
Sbjct: 703 IGMHFRGDDSLLDASVVSDEGYVFVVTEGGYAKRTAADQYRLQNRGGLGIKVAKLSDDRG 762

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                    +  E  +L V   G   R++  +     R   G+     ++ ++I AL 
Sbjct: 763 DLVGALIVEEDDE--VLVVLASGKVVRSAVAEVPAKGRDTMGVVFARFAETDKIIALA 818


>gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 832

 Score =  719 bits (1855), Expect = 0.0,   Method: Composition-based stats.
 Identities = 336/890 (37%), Positives = 487/890 (54%), Gaps = 90/890 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL  M +     ++ YVKC
Sbjct: 29  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 88

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEV+G YHPHG+A++Y+AL RM QD+SLR+ LI+GQGNFGS+DGD PAA RYTE R
Sbjct: 89  AKIVGEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 148

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K A  LL D+ K+TV F PNYD + Q+P VL A +PN+LVNG  GIAVGMATNIP HN
Sbjct: 149 LEKVAEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 208

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E +D  +AVI NP+I +  ++ II GPDFPT  +I+G  G+ +AY TG+GSI IR   
Sbjct: 209 LKETIDAVIAVIRNPEITIPEILRIIPGPDFPTSGIIIGGEGLISAYTTGKGSIRIRSKV 268

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    RE IVVTEIPYQVNK  +LEKI ++V EK+I  I+++ D SDR+G R+ I +
Sbjct: 269 EIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIHI 328

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A VILNQLY+ T LQ  + + M+A+   KP+ F +  IL A+ A R +V+V+RT+
Sbjct: 329 KKDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYSAHRRDVIVKRTQ 388

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  RAH+L GL IA+ N+++V+++IR S NP  A+++LM R              
Sbjct: 389 FDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVR-------------- 434

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSEVQ+ AILE+RL RLT L    I +EL  +   I +  DIL+  
Sbjct: 435 ------------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIVDLKDILAKP 482

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLD---MEDEDCIVREDMVVTVSHLGYVKRV 551
           SR+  I+  EL  V D+  T R+T I    ++      ED I  E+MV+ +++  ++KR+
Sbjct: 483 SRINDIVCTELQEVGDKYGTKRKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRL 542

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  ++ Q+RGGKG  G+  + +D +  +    TH S++FFS++G VY  K +       
Sbjct: 543 PIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYE------ 596

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV-FATKHGNVRRNKLSDFIQINR 670
                       L    +           +   + YV    T  G               
Sbjct: 597 ------------LPIASKEARGKSLKAIINLREDEYVSSIFTFRG--------------- 629

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                                 + D+LL TK G   R     ++ F      G+  I L 
Sbjct: 630 -------------------QDMDKDLLLVTKRGFIKRI---QLKEFGNVKKSGIIAIGLR 667

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD++I +  +   D   +  I   K ++ +        +  T+                
Sbjct: 668 EGDELIKVEAIEDKD---EVMIFSKKGLALRIEGNIIRAQGRTASGVTGMRLAEDDTIVG 724

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                + + I  VSE+G+GKR    +F    R GKG+    V++ N  G  V    V   
Sbjct: 725 LSKYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKVTEKN--GFSVGTGSVGSE 782

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           D++IL++ +G  IR+   +I    R   GV I     +++V     + E+
Sbjct: 783 DEVILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDKVQDFTVLGEN 832



 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 85/219 (38%), Gaps = 11/219 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  T      R PI   +    R   G++G+S  + D +  M   +  D+  
Sbjct: 523 LIADEEMVIQITYDQFIKRLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMTHDSIM 581

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y+               +      +   +  +S       +  ++ +L V++
Sbjct: 582 FFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYVSSIFTFRGQDMDKDLLLVTK 641

Query: 806 KGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           +GF KR    +F  +      GI A  + +      L+ V  + D D++++ S KG  +R
Sbjct: 642 RGFIKRIQLKEFGNVKK---SGIIAIGLREG---DELIKVEAIEDKDEVMIFSKKGLALR 695

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  N IR   R   GV     A+D+ +V + + +E E +
Sbjct: 696 IEGNIIRAQGRTASGVTGMRLAEDDTIVGLSKYKEGEDI 734



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 19/212 (8%)

Query: 705 CVRFPISAIRV-------FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            VRF +S ++             S+ V+ I + + ++V  + +      D   +   +  
Sbjct: 432 MVRFSLSEVQSDAILEMRLQRLTSLEVQKI-IDELEEVRKLIV---DLKDILAKPSRIND 487

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +        GD          S      S    ++L   E+ ++ ++   F KR     F
Sbjct: 488 IVCTELQEVGDKYGTKRKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLPIDTF 547

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRA 876
           +   R GKGI+        +   ++ +       D I+  S+ G +  +   E+ IAS+ 
Sbjct: 548 KRQKRGGKGIQGLSQ----KRDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKE 603

Query: 877 TKGVVI---FSTAKDERVVSVERIRESEIVDE 905
            +G  +    +  +DE V S+   R  ++  +
Sbjct: 604 ARGKSLKAIINLREDEYVSSIFTFRGQDMDKD 635


>gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
 gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168]
          Length = 796

 Score =  718 bits (1853), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/894 (36%), Positives = 510/894 (57%), Gaps = 103/894 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S++I D+M++SYL+Y+++VI  RA+PD+RDGLKPVHRRIL+   ++G+  +K + K
Sbjct: 3   EKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPHKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+A++YDA+ RMAQ ++ R  LI+G GNFGS+DGD PAA RYTE 
Sbjct: 63  SARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A  ++ D+ +DTVDF  N+DGS QEP +L  + PN+L+NG  GIAVGM+T+IP H
Sbjct: 123 RLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  V ++ +P+  L+ +M+ I GPDFPTGA I+G +GIK AY TG G I +R  
Sbjct: 183 NLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIVGLSGIKKAYKTGNGKITLRAR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G ++QI++ EIPY +NK  +LE IAEL+ + +I +++DLRDESD++G R+V+E
Sbjct: 243 TQIEK-KGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRIVVE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK GA  D+ILNQLY++TSLQ+ + +NM+AL+G +P    LI ILK F+ FR +V+ RRT
Sbjct: 302 LKSGADPDIILNQLYKFTSLQTNYRINMLALDGKQPRVMDLITILKNFINFRRQVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KY LNKA++R H+L GL  A+  LD V+ IIR S + + AR++L ++             
Sbjct: 362 KYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                        + ++E Q  AIL +RL +L G+  + +  E   L  +IK    IL++
Sbjct: 409 -------------LVITEKQAEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
           ++ L  ++K+ELL +K++    R+T I+E       E  D I +E + +T S+   +KR 
Sbjct: 456 KNELDKVLKKELLDIKNKYADKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             S Y                  D++ D    +T  ++LFF++ G VY   V ++P    
Sbjct: 516 TSSEY------------ARAGKNDYIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHG 563

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
            + G  + + L +   ++I  ++   E+       Y+  ATK G V++    ++     S
Sbjct: 564 LSTGDNIKDFLKIPLSKKIVKVICLNEET---KEKYITIATKQGMVKKTIGGEYQT-TYS 619

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A+KL+  DE++ VE      +ILL TK  + +RF   ++    GRN++G  GI LAK
Sbjct: 620 RIKAIKLNKGDEVVGVEITDGNQEILLGTKKAKTIRFEEDSV-SDTGRNTIGSIGIKLAK 678

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+V+S  +V +  +                                             
Sbjct: 679 GDEVVSFNLVNNNTS--------------------------------------------- 693

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   ++++S+ G GKR+   ++   NR+GKG++       + I  +  V   N +D
Sbjct: 694 --------VVSISKTGRGKRSPIEEYNPQNRNGKGLKTC----GSSIYKMAGVICANPDD 741

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            I++ +    L  V VN++   SR      + S   D+++  VE++  +   D 
Sbjct: 742 YILITTGNEKLYTVKVNDLTETSRTGNMYEVVSLKNDDKITGVEKLPFAPEEDN 795


>gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
 gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1]
          Length = 830

 Score =  717 bits (1851), Expect = 0.0,   Method: Composition-based stats.
 Identities = 346/848 (40%), Positives = 499/848 (58%), Gaps = 41/848 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + ++S +ITD MQ +Y+ Y+++VI+ RA+PD RDGLKPV RR+L+ M++ G+  N+ + 
Sbjct: 5   SEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFD 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA + GEV+  YHPHG++++YD L RMAQ W +R  LI+ QGNFGSVDGDP AA RYTE
Sbjct: 65  KCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           CRL   A  LL D+ +DTVDF PNY  S  EP VL A  PN+L+NG  GIAVGM TNIP 
Sbjct: 125 CRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E++D   A+IDNP I +D L  I++GPDFPTG VI GR GI +   TG+G +  RG
Sbjct: 185 HNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIAGREGILSYLKTGKGIVRTRG 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            +H E+  G  EQIVVTEIPY VN+A ++ +IAELV +K+I  I DLRDESD    R+VI
Sbjct: 245 KAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDE-NTRIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  + V++NQL++ T+L+S F V ++AL+  +P++  +  +++ ++  R EVV RR
Sbjct: 304 ELKRGEQSKVVINQLFQKTALESSFGVTLLALDKKRPKQMNIKELIECYIEHRREVVTRR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A DRAH+L G  IA+ NLD+ V+IIR S N E A+  LM +            
Sbjct: 364 TRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE QT AILELRL +LTGL R  I  E   L   I+E   IL 
Sbjct: 412 --------------YPLSERQTDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILE 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S  +LL +IK+EL  +K++  +PRRT I+    +   ED I  E  V+TVSHLG++KR P
Sbjct: 458 SEPKLLALIKKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTP 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           ++ YR+QRRGGKG  G    +EDFV +LF  STH  +LFF+S+G  + +KV+ +P G+  
Sbjct: 518 VAEYRSQRRGGKGVIGAETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRA 577

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ-INRS 671
           ++GK++ + L L +GE+I  ++   +      + Y+V ATK G ++++ LSD+       
Sbjct: 578 SKGKSVSSFLRLAEGEKIAAMLCVKDFA---EDRYLVTATKRGIIKKSALSDYANATREG 634

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV------FAGRNSVGVR 725
           G I + L   D ++     T EN+++L +  G  VRF               GR + GV 
Sbjct: 635 GLIGINLQEADSVIGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVT 694

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+    K D +  + +V H           +   +        +         D   +G+
Sbjct: 695 GMRFKLKSDYLDVIEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGS 754

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           I       ++  ++ ++ ++ KG   R    D R +NR  KG+R   +   +++  L   
Sbjct: 755 IKLAGALSVREDDE-VMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDKL--LSIA 811

Query: 845 FPVNDNDQ 852
             V   ++
Sbjct: 812 RIVETEEE 819



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 6/144 (4%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +    + +E  +    + +     E R +++   E  ++TVS  GF KRT   ++R   R
Sbjct: 467 KKELAEMKEKYTSPRRTEIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRR 526

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
            GKG+   +  + +    +  +F  + +D I+  +  G      V +I   +RA+KG  +
Sbjct: 527 GGKGVIGAETYEEDF---VANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKGKSV 583

Query: 883 ---FSTAKDERVVSVERIRESEIV 903
                 A+ E++ ++  +++    
Sbjct: 584 SSFLRLAEGEKIAAMLCVKDFAED 607


>gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
 gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53]
          Length = 865

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/891 (34%), Positives = 497/891 (55%), Gaps = 86/891 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E  +G+T V+I DE++ S+L YA++V++ RAIPD RDGLKPVHRRIL+ M ++G+    
Sbjct: 58  DEPTEGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGT 117

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++G GNFGS+DGD PA+ R
Sbjct: 118 QYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMR 177

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL+ + K+TVDF  NYD + +EP VL +R+PN+LV+G  GIAVGMAT+
Sbjct: 178 YTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATS 237

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +D  +A   N DI ++ L++ I+GPDFPTG VILG  GI  AY TGRG I 
Sbjct: 238 IPPHNLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVILGTKGILEAYKTGRGQIP 297

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    I +   ++ +I++T+IPY + K+A++E I++L +E  +  I+DLRDES+R G R
Sbjct: 298 LRSEYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIR 357

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI++K+G + +V+LN+L++ +SL + FSVNMVAL   +P+  TL  +L  ++  ++EV+
Sbjct: 358 IVIDIKKGFNPEVVLNKLFKKSSLLTKFSVNMVALVNTQPKLLTLKDVLDVYLEHQKEVL 417

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R   + L KA+D  H+L GL +A  N+D+VV +I+ S + E A ++L+++         
Sbjct: 418 TRELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEK--------- 468

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q +AIL +RL RLTGL    + NE+  L  EI+    
Sbjct: 469 -----------------YSLSEEQAKAILNMRLGRLTGLSYSKMTNEIEELRKEIQRITS 511

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-CIVREDMVVTVSHLGYV 548
           IL S   L+  +  +L  +K++    R+T I        +E+  I R+D+V+T +  G+V
Sbjct: 512 ILDSEQELVNNVIADLEKIKEKYGDSRKTSIDASASSSINEEQLIPRKDIVITATVDGFV 571

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV L  Y  Q RGG G +G+     D +  +   +TH  +  FS+LG VYK + +++  
Sbjct: 572 KRVNLEEYNLQNRGGMGSTGMKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQE 631

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +++G +  N++ LN+      I   P D    N                        
Sbjct: 632 ADKKSKGNSFANLVELNKELNEKIIRILPVDSYESNL----------------------- 668

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                                      +L  TK G   +  +   +      S G++   
Sbjct: 669 --------------------------HLLTVTKKGIVKKTALDNFKKV---RSNGIKAFK 699

Query: 729 LA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           L  + D++  + +V ++D      +        +       ++   S+           E
Sbjct: 700 LKDEEDELKDVILVTNSD---LVLVANNHKNVVKFEASKIRSQARNSIGVQGMKLDGKYE 756

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            +      + +F+LT+ E GFGK T   ++ ++NR+ KG  + + +   + G LV    V
Sbjct: 757 VQSISSSKEGEFVLTIGEFGFGKLTDHKEYSLTNRNAKGKTSINPA---KAGNLVFAKFV 813

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           N  D++++++ +G  IR  ++++ + SR +KGV I    + ++++SVE I+
Sbjct: 814 NPTDELLIITAQGNTIRTQLDQVSVFSRNSKGVRIIKLNEGDKIISVEVIK 864



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 81/213 (38%), Gaps = 10/213 (4%)

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + ++  T  G   R  +        R  +G  G+    GD ++S+         +     
Sbjct: 560 DIVITATVDGFVKRVNLEEYN-LQNRGGMGSTGMKTWSGDAILSIIQTNTHVDLFLFSNL 618

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-----ILTVSEKGF 808
              +     ++   D +   +   +         E+   +   + +     +LTV++KG 
Sbjct: 619 GKVYKLRAYKIQEADKKSKGNSFANLVELNKELNEKIIRILPVDSYESNLHLLTVTKKGI 678

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            K+T+  +F        GI+A  +   +E   L  V  V ++D +++ ++   +++   +
Sbjct: 679 VKKTALDNF--KKVRSNGIKAFKL--KDEEDELKDVILVTNSDLVLVANNHKNVVKFEAS 734

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +IR  +R + GV          V S+   +E E
Sbjct: 735 KIRSQARNSIGVQGMKLDGKYEVQSISSSKEGE 767



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 89/206 (43%), Gaps = 13/206 (6%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +TV+  G VK+  L  ++  R  G     +   +++ + D+ +V+    VL  ++   V 
Sbjct: 671 LTVTKKGIVKKTALDNFKKVRSNGIKAFKLKDEEDE-LKDVILVTNSDLVLVANNHKNVV 729

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           K +  ++   +  + G   +         ++          SS    +V+   + G  + 
Sbjct: 730 KFEASKIRSQARNSIGVQGM---------KLDGKYEVQSISSSKEGEFVLTIGEFGFGKL 780

Query: 660 NKLSDFI--QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
               ++     N  GK ++       ++  +     +++L+ T  G  +R  +  + VF+
Sbjct: 781 TDHKEYSLTNRNAKGKTSINPAKAGNLVFAKFVNPTDELLIITAQGNTIRTQLDQVSVFS 840

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLH 743
            RNS GVR I L +GD++IS+ ++ +
Sbjct: 841 -RNSKGVRIIKLNEGDKIISVEVIKN 865


>gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1]
 gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1]
          Length = 825

 Score =  717 bits (1850), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/913 (33%), Positives = 500/913 (54%), Gaps = 92/913 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  +   E     I  + I  E++  +L Y+++VI+ RA+PDL+DGLKPVHRRI++ M
Sbjct: 1   MSEKNL---EHNHGIIKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K + K ARI GEV+GKYHPHG+ A+YD++ RMAQD+S R  L++G GNFGS+
Sbjct: 58  NDLGITADKPHKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K ++F++ D+  +TV F  NYD S +EP  L   +PN+L NG  
Sbjct: 118 DGDGAAAMRYTEARLAKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAM 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKN 239
           GIAVGMAT+IP HNL EV+    A IDN DI +D ++   I GPDFPTGA++     ++ 
Sbjct: 178 GIAVGMATSIPPHNLREVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIRMRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRG++ IR    +E+      + ++TEIPYQ NKA ++E+IAELV+ K++  I+D+
Sbjct: 238 GYKTGRGAVTIRAKVALEENDR-HARFIITEIPYQTNKAKLIERIAELVKTKQLEGISDI 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+ +G R+VIEL+R ++ DV+L++LY++T+LQ+ +S+N+++L+   P    L  I+K
Sbjct: 297 RDESNYEGIRIVIELRRDSNPDVVLSKLYKFTNLQTTYSLNLLSLHNNIPVLLDLKSIIK 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V F+  V+++R+ +  +K   R H+L  L  A+ N+D +V I+R SP    A+ +L +
Sbjct: 357 HYVDFQINVIIKRSIFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTE 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                          E Q +AIL++RL RL GL R  I+ E+  
Sbjct: 417 --------------------------AFGFDEEQNKAILDMRLQRLVGLERGKIQQEMAQ 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDM 538
           +   I     ++S  +    ++K +L  + ++    RRT  ++  L   EDE+ I     
Sbjct: 451 IKERIDYLTLLISDETEQNNVLKNQLSEIAEKFGDNRRTETIDEGLMDIEDEELIPDVKT 510

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++ +S  GY++RV    +R Q+RGG+G S     ++  V    +      VLFF++ G V
Sbjct: 511 MILLSDEGYIRRVDPEEFRVQKRGGRGVSVNSSNEDPIVIAT-MGKMRDWVLFFTNSGKV 569

Query: 599 YKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           ++ K + +   S  ARG  ++N L+ L  G++IT I+P    +   N  Y+ F T+ G +
Sbjct: 570 FRTKAYNIRQYSRTARGLPIVNFLNGLTAGDKITAILPLRNVKEKMN--YLTFITEKGMI 627

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +S F  IN++GKIA+ L   D++++V   T E+ I +  K G+ +R   + +R  +
Sbjct: 628 KKTDISLFDNINKNGKIAINLKEDDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLS 687

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R + GV+ I L + D V+  A+      +                              
Sbjct: 688 -RTASGVKAIKLDEND-VVVGAVTSFGIEN------------------------------ 715

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 I T+S KG  K+T+  ++RIS R+GKGI+  ++++  +
Sbjct: 716 ----------------------ITTISSKGSFKKTNIDEYRISGRNGKGIKVMNLNE--K 751

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G   ++    + D + ++S  G LI+   ++I +  RA  GV     ++  ++ +V   
Sbjct: 752 TGDFKSIIAARETDLVCIISTDGNLIKTKASDIPVLGRAAAGVRGIRLSEGNKIQAVMLE 811

Query: 898 RESEIVDEAESTE 910
                 +  E  E
Sbjct: 812 YRKHGEENQEFEE 824


>gi|167044924|gb|ABZ09590.1| putative DNA gyrase/topoisomerase IV, subunit A [uncultured marine
           microorganism HF4000_APKG8D23]
          Length = 898

 Score =  715 bits (1846), Expect = 0.0,   Method: Composition-based stats.
 Identities = 334/937 (35%), Positives = 500/937 (53%), Gaps = 89/937 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +    I+DEM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+GM Q G   +K Y K
Sbjct: 3   ENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGYSK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  GEVMGKYHPHG+ A+YD + RMAQD+SLR  LI+GQGNFGS+DGDPPAA RYTE 
Sbjct: 63  SARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPPAAMRYTES 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + +  +LDD+ KDT+D  PN+D +  EP VL AR PN+L+NG  GIAVGMAT IP H
Sbjct: 123 RLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKIPPH 182

Query: 194 NLGEVVDG-------------CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           NL EV                 + + + P ID    ME ++GPDFPTGA I G  GI + 
Sbjct: 183 NLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDGILDM 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG G   IR    +++ S   +++VV  IPYQV KA ML+ IAELVR+  I  I D+R
Sbjct: 243 YRTGNGRFQIRSDVEVQEDSRG-KRLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIRDIR 301

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES ++G RVVIE+K+ A    +LNQLY+ + LQ  +S NM+ +   +P +  L  IL  
Sbjct: 302 DESSKEGIRVVIEIKQNADPHAVLNQLYQSSRLQESYSANMMGILNGEPVQLDLRTILHT 361

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  RE VV RRT++  +KA  RAH+L GL  A   + E++ + R S + +       ++
Sbjct: 362 YVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRD-----QFEQ 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                +    I                  S+ Q +AI E RL +LT L   ++ +EL  L
Sbjct: 417 YLRGDEKYPKIRR-------------FDFSDKQAKAIAERRLYQLTKLNVQEVADELKKL 463

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              IK+  +IL SR R L II  EL  V D     RR+RI    L M+ ED +  + +V+
Sbjct: 464 KGAIKDYQNILGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPLSMDREDLVAEQAIVI 523

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           +++   Y++ +P+  +R Q RGGKG  GVV ++ED  + +    +   +L F+ +G VY 
Sbjct: 524 SLTRDNYIRHLPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYG 583

Query: 601 EKVWRLPIGSPQARGKALINILS-LNQGERITTIMPF-PEDESSWNNLYVVFATKHGNVR 658
            + W  P  S   RG  + N+L+ +   E++ +I+P       +    Y++FAT +G ++
Sbjct: 584 LRAWETPSASRYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIK 643

Query: 659 RNKLSDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILLTTKLGQCVRFP------- 709
           +++LS++++INR+GK A++      D ++SV   T  + ++L +  G   RF        
Sbjct: 644 KSRLSEYVKINRNGKYALRFAGGEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSR 703

Query: 710 ---------ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                     + +    GR S GV G+ L KGDQVI M +    D        Y     +
Sbjct: 704 VDSNSGETITTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTDDFDTSVLTISRYGMAKRS 763

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +                    +G + ++R                           +R +
Sbjct: 764 RLGSGEMKPVLDDDSMPVLDEDGGLVQQR-------------------------DGYRRT 798

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIA-SRATK 878
           NR  +G+R   +        +V+V  V D +DQ+ +++  G +IR+   + +    + TK
Sbjct: 799 NRGTRGVRTMSLRDG---DHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQTKETLGKVTK 855

Query: 879 GVVIFSTAKDER------VVSVERIRESEIVDEAEST 909
           G  I      +R      ++ V R+  +++VD +++ 
Sbjct: 856 GTRIMELRNADRTGYVDEIIFVARLP-ADLVDSSDAE 891


>gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
 gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9]
          Length = 838

 Score =  714 bits (1842), Expect = 0.0,   Method: Composition-based stats.
 Identities = 325/917 (35%), Positives = 503/917 (54%), Gaps = 115/917 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   NTGQVVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL    H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+ID+PD+  + L+E+I GPDFPTG  I+G  GIK AY TG+G I++
Sbjct: 189 PPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKEAYNTGKGGIIL 248

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV  +E          R  I+VTE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDR
Sbjct: 249 RGVVSLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG RVVIELKR A+ + ++ QLY+ T+LQ+ F   ++AL   +P + +L  +L+ F+ FR
Sbjct: 309 QGMRVVIELKRDANPEEVIGQLYQQTALQTTFGAILLALVEGQPRQLSLRQMLQEFLRFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+ + RR  Y L KA +RA ++ GL  A++ +DEV+ I+R SP+  TA+  L Q+     
Sbjct: 369 EDTLNRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKMVLCQQ----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + L+E Q  AIL + L RLT L + +++ E + L  +I 
Sbjct: 424 ---------------------LELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQIT 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------------- 530
               +L  R  LL  +K++L ++K +    RRT+++ G + ++ +               
Sbjct: 463 SLRRLLEDRRELLKSLKKDLRTLKRKYGDTRRTKLIPGQIAVKPDKVNNQPSSPGEKEKS 522

Query: 531 ----DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
               +    E  ++  +  GYV+R+     +A       ++  +  D DF+    I +TH
Sbjct: 523 KISPEEQPPEPAILEFTQRGYVRRLAPGSKKA-------KAETITGDNDFLIQTEITNTH 575

Query: 587 TSVLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
             +L  ++ G VY  KV  + PI +   RG  LI +L+      +  I+       + + 
Sbjct: 576 QDLLILNTSGKVYPVKVGDISPISARSPRGMPLITLLTNTAQGNVEGILGRFILPETKDT 635

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +V  TK G ++R  L +   +++ G   +KL   D++   +     ++++L +  G+C
Sbjct: 636 HDMVIVTKQGRIKRLSLEELTNVSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRC 695

Query: 706 VRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF I+  +    GR ++G++   + K  Q+IS   +                       
Sbjct: 696 LRFAINDDQLPVMGRAAMGLQSFRILKSQQIISCVTI----------------------- 732

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                          +E+ +L V+++G+ KR SS   R  NR  
Sbjct: 733 ------------------------------EQEENLLLVTQEGYAKRISSGSLRAGNRGD 762

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+       N+   LVA+   N + +++LV++K  +++  V  I I  R  +G  IF 
Sbjct: 763 LGIQMLKF--HNKTDNLVAITRTNTSQKVVLVTNKERMVKTSVQSIPILDRDARGENIFP 820

Query: 885 TAKDERVVSVERIRESE 901
             +DE + SV  + E+E
Sbjct: 821 MTRDEVITSVVVVLETE 837


>gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2]
 gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2]
          Length = 817

 Score =  713 bits (1840), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/892 (32%), Positives = 462/892 (51%), Gaps = 90/892 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M       +K Y K
Sbjct: 5   EQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+++IY+ + RMAQ W +  +LI+G GN+GS+D DP AA RYTE 
Sbjct: 65  SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  +L D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP H
Sbjct: 125 RLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +L E +D C+AV+  P++ ++ LM I++GPDFPTG +I+G  GI+ AY TG+G I IR  
Sbjct: 185 SLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGGIIMGEEGIREAYTTGKGRIYIRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G R+QI +TEIPYQV K+ ++  +  +  EK++  I+++RDES R G R+V+E
Sbjct: 245 VEIEDVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ IL  L + T LQ  ++ NMVA+    P++  +  IL A++  ++EVV  RT
Sbjct: 305 LKKEADANGILAYLLKKTDLQVTYNFNMVAIVNKAPQQLGIKQILNAYINHQKEVVTHRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +RAHV+ GL  A+  LDEV+  I+ S N   A+  L+ +             
Sbjct: 365 QYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AIL L+L RLT L    +  E      +I     IL S
Sbjct: 412 -------------YGFSERQADAILTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILES 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
             +LLG+IK EL  ++++    RR+ I   + +  +  E  +  ED++VT+S  GY+KR 
Sbjct: 459 EKKLLGVIKDELTEIREKYGIDRRSSIRGEVEELKVNLEVMVQSEDVIVTLSEEGYMKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  +    R G       +++ D ++ ++ V+T  ++L F+  G  Y   V ++P    
Sbjct: 519 SMLSF---TRSGGDLQTAGVKEGDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKW 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G A++NI+ + + + I  I+P  +      +  +VF TK   V+R +L +++    +
Sbjct: 576 KDTGTAVVNIVPIPKDDSIVAIIPVKDFNLPGAS--LVFVTKRAQVKRTELKEYMTTRST 633

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
              A K+   DE++ V        +LL +KLG  +RF    +    GR + GVRG+ L +
Sbjct: 634 AIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVNAM-GRVAAGVRGMQLRE 692

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D++I+   V                                                  
Sbjct: 693 DDELIAAEWVAD------------------------------------------------ 704

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE----IGALVAVFPV 847
                E  +L V++ G+ KRT   D+ +  R GKG++  +  +         ALVA    
Sbjct: 705 ----DEGEVLVVTDLGYAKRTLLLDYPLQGRGGKGVQTFEFKEGKRVKPNGSALVAALYC 760

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +   II ++ +G  +     +  I  R + G ++    K++ + ++    E
Sbjct: 761 KEELGIIALTSQGAQLAASSEKAPIEDRKSIGRILLPMEKNDVITTIFVRPE 812



 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 57/272 (20%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +    +   +V  ++ G ++R  +  F +     + A  +   D I SV      
Sbjct: 492 LKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTA-GVKEGDAISSVYEVNTI 550

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDER 751
           +++LL T+ GQ    P+  I  F  +++    V  + + K D ++++  V          
Sbjct: 551 DNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKD-------- 602

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                      L    ++ V+++   KR
Sbjct: 603 -----------------------------------------FNLPGASLVFVTKRAQVKR 621

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   ++  +        A   +K+ E   ++ V       Q++LVS  G  IR    E+ 
Sbjct: 622 TELKEYMTTR-----STAIAAAKVAEGDEVIRVTLSEGTKQLLLVSKLGMSIRFSEQEVN 676

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              R   GV      +D+ +++ E + + E  
Sbjct: 677 AMGRVAAGVRGMQLREDDELIAAEWVADDEGE 708


>gi|323452177|gb|EGB08052.1| hypothetical protein AURANDRAFT_53761 [Aureococcus anophagefferens]
          Length = 915

 Score =  712 bits (1838), Expect = 0.0,   Method: Composition-based stats.
 Identities = 324/941 (34%), Positives = 481/941 (51%), Gaps = 113/941 (12%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             + S  EE      + +  E+  S++ YA++ ILGRA+PD RDGLKPVHRRILF M ++
Sbjct: 52  TQLRSTTEEHTAPIPIELEAELSESFMKYAMSTILGRALPDARDGLKPVHRRILFAMREL 111

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     Y KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+ +   L++G GNFGSVD D
Sbjct: 112 NLTPGTPYRKCARVVGEVLGKFHPHGDNSVYDALVRMAQDFVMSARLVDGHGNFGSVDAD 171

Query: 124 PPAAERYTECRLQKAAHFLL---DDLGKD----------TVDFRPNYDGSFQEPVVLCAR 170
           PPAA RYTEC+L K A+  L   DDLGK           +V+F  N+D S  EP VL AR
Sbjct: 172 PPAAMRYTECKLTKFAYEALLNGDDLGKANRGEPLAGGVSVNFSDNFDASEMEPDVLPAR 231

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV----AVIDNPDIDLDALMEIIRGPDFP 226
            P +LVNG  GIAVGMAT+IP HNLGEV D  +    A         D L   +  PDFP
Sbjct: 232 VPVLLVNGAAGIAVGMATSIPPHNLGEVCDAALVVARAAKRGAKASDDELSVALPAPDFP 291

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           TG +I+G TG+  AYATG+GSIVIR  +H EK    R  IV TE+PYQV K+ +L K A+
Sbjct: 292 TGGLIMGTTGVARAYATGQGSIVIRAKTHFEKVRSGRNAIVATELPYQVIKSELLAKTAD 351

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
            +  +RI  IADLRDES R+G RVV ELKR A A+++L+ L++ T LQ+ F  N+VA++ 
Sbjct: 352 AINARRIEGIADLRDESGREGTRVVFELKRDAQAEIVLSNLFKSTRLQTSFPANIVAVDH 411

Query: 347 ---------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
                      P R TL   L+ +++FR + V  R  +   +A  R H++ GL +A AN+
Sbjct: 412 ALNDDGDDVRSPVRMTLRYALERWLSFRFDCVRLRAAHSERRAAARLHIVEGLCLATANV 471

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D VV +IR S  P  A+ +L++     +                       LSE Q  A+
Sbjct: 472 DAVVALIRASDAPADAKAKLVEGGAIPAMGA--------------------LSEDQASAV 511

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L L L+RLT L  D + +E   L ++++    ++S  + +   +  E+ ++K    TPRR
Sbjct: 512 LALTLSRLTTLEADKLDSERKDLEVKLEGLRKLMSEDAAVYDAVVDEVAAIKKAYPTPRR 571

Query: 518 TRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           + IV        DED I      V V+  GYVKR  L  + AQ RGG+GR+ +       
Sbjct: 572 SEIVFDGDAELRDEDVIENARSAVLVARDGYVKRTSLEEFGAQSRGGRGRNAL---QGGT 628

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +  L     H ++L  +  G  Y  + + +P  S  ARG  + ++L +++  RI  ++  
Sbjct: 629 LRHLVTCHDHDTLLCIADTGVAYGVRAFNVPQASRAARGVPVPSVLPVDRSTRIKGLLAV 688

Query: 637 PEDESSW------NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             D          + L++V  T++G V++  L+ F  +   G IA+KL   D +     C
Sbjct: 689 AHDTLQNPKPGDDDELFLVVLTRNGLVKKTPLAAFKGLTSRGLIAIKLGEGDAVTHARLC 748

Query: 691 TQENDILLTTKLGQCVRFPI--SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
              + ++L T  G   RF    S +R  + R + GVR ++L  GD ++ M +        
Sbjct: 749 RASDSLILATAAGMVTRFAADDSELRSMS-RTTRGVRAMNLRDGDAIVKMDV-------- 799

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                              +L ++ +G+
Sbjct: 800 --------------------------------------------AGGDHSHVLVLTAEGY 815

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKR +  D R   R G G+ A    K  +   LV++ PV  ND++++V++ G ++R+   
Sbjct: 816 GKRVALADLRSQKRGGMGVSAIKFKK--KGDDLVSICPVAPNDEVMVVTESGVIVRMDAA 873

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            +   SR   GV++   AKD+ +V +  +    +  +A   
Sbjct: 874 SVTAQSRTATGVLVQKAAKDDALVDLTVVPADLLSSDAPGE 914


>gi|295401843|ref|ZP_06811807.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312111015|ref|YP_003989331.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|294976097|gb|EFG51711.1| DNA topoisomerase IV, A subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311216116|gb|ADP74720.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y4.1MC1]
          Length = 814

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/897 (33%), Positives = 479/897 (53%), Gaps = 91/897 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNILIEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TV+F PN+D +  EPVVL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSSIALELLRDIEKQTVEFVPNFDDTTNEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGEV+D  +  ID P   +D LM +I+GPDFPTG +I G+ GIK AY TG+G I+IRG 
Sbjct: 183 HLGEVIDAVIMRIDKPKCTVDELMTVIQGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G R+VIE
Sbjct: 243 AAIEQGKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGIADVRDETDRTGLRIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++  R+EVV  R+
Sbjct: 303 LKKDADAEGILNYLYKNTDLQVPYSFNMVAIHERRPKLLSLPELLDAYIEHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L+ +             
Sbjct: 363 QYELKKAYERQHIVEGLVKALSILDEVIATIRASRDKRDAKDNLIAK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      ++ E   L   I+E   IL+S
Sbjct: 410 -------------YEFTEAQAEAIVSLQLYRLTNTDITALQQEAEQLEKTIQELTTILNS 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL ++K +    RRT I + +    +  E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLAVIKRELKAMKKQYADERRTVIEDEIEELKINLEVMIPSEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A            M++ D +     ++T   +L F+  G      V+ LP    
Sbjct: 517 SYRSYNASNG-----QDFGMKESDRLLSQMEMNTTDVLLLFTRKGNYLYCPVYELPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ + N++ L++ + +   +P    +     L +VF TK G V+R +L  +      
Sbjct: 572 KDVGQHISNLIPLDRDDDLIAAVPVKRFD---EPLSLVFVTKQGMVKRTELGQYKVQRYT 628

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   DE++ V     +  +LL T  G  + F  + I    G  + GV+GI+L 
Sbjct: 629 RPLVAINVKEGDEVIHVHATDGQQSLLLITNQGYGLWFDEAEI-SMVGVRAAGVKGINLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+S                                                     
Sbjct: 688 EGDHVVSA---------------------------------------------------H 696

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             +   EQ+++ V+++G  K+    +F  ++R+ +G+      K N    +VA    + N
Sbjct: 697 PIVAEGEQYLVIVTQRGAIKKMPLSEFTKTSRAKRGVVMLRELKTNPH-RIVASVLTDKN 755

Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D+++ + ++ G +  + V+ +R+A R + G  I  + +   V+ + +   + +  E 
Sbjct: 756 DEMLFIRTETGEIETLSVSSLRVADRYSNGSFIIDSDEAGNVIDMWKQPFNILGKEE 812


>gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708]
 gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708]
          Length = 835

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/913 (34%), Positives = 488/913 (53%), Gaps = 115/913 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   STGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL    H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLAPVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVDG + +IDNPD+  + L EII GPDFPTG  I+G +GI+ AY TG+G IV+
Sbjct: 189 PPHNLGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIVGNSGIREAYTTGKGGIVL 248

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV+ +E+      S  R  I++TE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDR
Sbjct: 249 RGVATLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR  +   IL  LY  T+LQ+ F   ++AL   +P + +L   L+ F+ FR
Sbjct: 309 EGMRVVIELKRDTNPQEILQHLYHQTALQTTFGAILLALVEGQPRQLSLRQTLQEFLNFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E  + RR  Y L KA +R +++ GL  A++ LDEV+ I+R + +  TA+  L ++     
Sbjct: 369 EHTLNRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCRQ----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + LSEVQ  AIL + L RLT L + +++ E +SL  +I 
Sbjct: 424 ---------------------LDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQIT 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC------------- 532
               +L  R  LL  +K++L S+K +   PRRT+I+         +              
Sbjct: 463 SLRRLLEDRRELLKALKKDLRSLKRKYSDPRRTKILAINETPIKSEKGTTETEDNPKSKL 522

Query: 533 ------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
                    E+ ++  +  GYV+R+          G K ++   + + DF+    +  T 
Sbjct: 523 QTPKSEQPPEEAILEFTQRGYVRRLSP-------TGKKPKAENGLHENDFIIQTELTDTE 575

Query: 587 TSVLFFSSLGFVYKEKVWRLP-IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
             +L  ++ G VY  KV  +P I     RG  LI +L+      +  ++       +   
Sbjct: 576 KDLLILNTGGKVYPVKVGDIPAITGRSPRGTPLITMLTSTAQGNVEGVVNRFVLPETPER 635

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++  TK G ++R  + +F  ++R G   +KL   DE+   +  T    ++L +  G+ 
Sbjct: 636 SQMLLLTKQGRIKRLSMEEFANLSRRGITILKLKDDDELSFTQFTTTGQHLILASSSGRL 695

Query: 706 VRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF ++  +    GR ++G++   L K  Q++  A V   D                   
Sbjct: 696 LRFAVNEEQLPIMGRAAMGLQAFRLLKNQQMVGCATVGKDD------------------- 736

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                            Q +L  +++G+ KR  + + R +NR  
Sbjct: 737 ---------------------------------QLLLV-TQEGYAKRIPASNLRAANRGD 762

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GI+       N+   L  +       ++ LVS+K  ++R+PV+ + I  R  KG  +  
Sbjct: 763 LGIQMLKF--HNKTDNLAGMVRATPGVEVALVSNKERVVRIPVDTVPILDRDAKGESVLQ 820

Query: 885 TAKDERVVSVERI 897
             +DE++++V  +
Sbjct: 821 LNRDEKIITVVEV 833



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 89/257 (34%), Gaps = 58/257 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  T+ G VRR   +      +  K    L   D I+  E    E D+L+    G+   
Sbjct: 535 ILEFTQRGYVRRLSPTG-----KKPKAENGLHENDFIIQTELTDTEKDLLILNTGGKVYP 589

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  I    GR+  G   I++                                      
Sbjct: 590 VKVGDIPAITGRSPRGTPLITM-------------------------------------- 611

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKG 826
                 +     +VEG ++     E   + Q +L ++++G  KR S  +F  +S R    
Sbjct: 612 -----LTSTAQGNVEGVVNRFVLPETPERSQMLL-LTKQGRIKRLSMEEFANLSRRG--- 662

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFS 884
                + K+ +   L           +IL S  G L+R  VNE  + I  RA  G+  F 
Sbjct: 663 ---ITILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFAVNEEQLPIMGRAAMGLQAFR 719

Query: 885 TAKDERVVSVERIRESE 901
             K++++V    + + +
Sbjct: 720 LLKNQQMVGCATVGKDD 736


>gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
 gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 823

 Score =  712 bits (1837), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/907 (33%), Positives = 473/907 (52%), Gaps = 88/907 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE +I  +         + I + M++S+  YA++VI  RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTE-VIDPEAGASNAPLELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+G+     + K AR+ G+V+GKYHPHG++A YD+  RMAQ W++R  LI+GQGNFGS+
Sbjct: 60  HQLGITHMVAHKKSARVVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K    L  D+ K+TVDFR N+DG+ +EP VL   YPN+LVNG  
Sbjct: 120 DGDNAAAMRYTEMRLSKLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSE 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMAT++P HNL E  D  +A +DNP+I    + + + GPDFPTG ++    G   A
Sbjct: 180 GIAVGMATSVPPHNLRETADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG++ +R    +E       ++V+ +IPY VNKA ++E+IAELVREK+I  +ADLR
Sbjct: 240 LDTGRGAVKLRSQWTVEDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLR 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+++G R+V+E+KR   A+ I  QL   T L++    N++AL G  P +  +  + + 
Sbjct: 300 DESNKKGIRIVLEIKREFEAEAIAFQLVTMTQLETSVRYNIMALVGQTPMQLGVRDLFEH 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F A R EV+ RRT++ L++A DR H+L GL +A+  LDE +  IR S + + AR  L+  
Sbjct: 360 FRAHRIEVIQRRTQFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLI-- 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                     + +   Q +AIL+++L +LTGL   DIR+E + L
Sbjct: 418 ------------------------DLLGIDVTQAQAILDMKLQKLTGLQIQDIRDEHDRL 453

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             E+ +  DIL+   R + I++ ELL + D+    R T I   L  +   D I  ED+++
Sbjct: 454 TAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEIDTSLSKVSAADLIPEEDVML 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  GY+KR+       Q RG KGRS + + ++D VT      +H +++  +  G V+ 
Sbjct: 514 IGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLVTTFHAGHSHDTLIALTDSGQVHA 573

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + +P      +G+   N+     G     +     D        +V  T  G V+R 
Sbjct: 574 IKAYDIPDTGLGNKGRHYRNVFE---GVEGNVVAMLTVDGLESVTHSLVIFTAQGLVKRT 630

Query: 661 KLSDFIQ-INRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFA 717
            LS +     R G   + L   D I+       E    +++     + +RF +   R   
Sbjct: 631 PLSAYSNATRRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAKAIRFGMEEARAI- 689

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR S GVR ++L++  +V++  I+   D                                
Sbjct: 690 GRTSRGVRAMNLSEDARVVAGDIIHADD-------------------------------- 717

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                            L++  ++ VSEKG GK T + +FR+ +R GKG+ +   +K + 
Sbjct: 718 -----------------LEKAHLMVVSEKGLGKATPASEFRLQSRGGKGVTSYTPNKRS- 759

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G +VA   + +   ++L +D+G   R+  +++    RAT G  I     +  V +V  +
Sbjct: 760 -GPVVAATVLFEGADVVLFNDQGGANRIAGSDVPHNGRATTGSAIIR---NGSVRNVLAV 815

Query: 898 RESEIVD 904
                 D
Sbjct: 816 PPPVEED 822


>gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans]
 gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 834

 Score =  711 bits (1835), Expect = 0.0,   Method: Composition-based stats.
 Identities = 333/826 (40%), Positives = 503/826 (60%), Gaps = 35/826 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I D+M+ +YL YA++VI+GRA+PD+RDGLKPVHRRIL  M +     ++ YVKC
Sbjct: 31  RVIPVEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKC 90

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+I GEV+G YHPHG+A++Y+AL RM Q++SLR+ LI+GQGNFGS+DGD PAA RYTE R
Sbjct: 91  AKIVGEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEAR 150

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+K A  LL D+ K+TV F PNYD + ++P VL A +PN+LVNG  GIAVGMATNIP HN
Sbjct: 151 LEKVAEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHN 210

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E +D  +AVI NP+I +  +++II GPDFPT  +I+G  G+ +AY+TG+GSI IR   
Sbjct: 211 LRETIDAVIAVIRNPEITIPEILKIIPGPDFPTSGIIIGGEGLISAYSTGKGSIRIRSKV 270

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE+    RE IVVTEIPYQVNK  +LEKI +LV EK+I  I+++ D SDR+G RV I +
Sbjct: 271 EIEEKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHI 330

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+A VILNQLY+ T LQ  + + M+A+   KP+ F +  IL A+ A R EV+VRRT+
Sbjct: 331 KKDANAQVILNQLYKMTQLQVSYGITMLAILDNKPKIFNIKEILTAYAAHRREVIVRRTQ 390

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+KA  RAH+L GL IA+ N+++V+++IR S NP  A+++LM R              
Sbjct: 391 FDLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIR-------------- 436

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSEVQ+ AILE+RL RLT L    I +EL  +   I +  DIL+  
Sbjct: 437 ------------FSLSEVQSDAILEMRLQRLTSLEVQKIIDELEEVRKLIIDLKDILAKP 484

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLGYVKRV 551
           SR+  I+  EL  V D+    R+T I            ED I  E++V+ +++  ++KR+
Sbjct: 485 SRVNEIVCTELQEVGDKYGNKRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRL 544

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           P+  ++ Q+RGGKG  G+  + +D +  +    TH +++FFS++G VY  K + LPI S 
Sbjct: 545 PIDTFKRQKRGGKGIQGLSQKRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASK 604

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +ARGK+L  I++L + E I+++  F  ++    +  ++  T+ G ++R +L +F  + +S
Sbjct: 605 EARGKSLKAIINLREDEYISSVFTFRGEDM---DKDLLLVTRKGFIKRIQLKEFGNVKKS 661

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           G IA+ L   DE++ VE+ T ++++++ +K G  +R   + IR   GR + GV G+ LA+
Sbjct: 662 GIIAIGLREGDELIKVESMTDKDEVMIFSKKGLALRIEGNIIRA-QGRTASGVTGMRLAE 720

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            D ++ ++     +  +                 +             + +   S     
Sbjct: 721 DDAIVGLSKYKEGEDIFVVSEEGYGKRLGFEEFAAKGRGGKGMAYLKITEKNGFSVGTGS 780

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                E  I+ ++++G   R +++D     R+  G+R  D+   ++
Sbjct: 781 VGSEDE--IILITQQGMTIRINAFDISKLGRTAVGVRIVDLKDNDK 824



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 11/219 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  T      R PI   +    R   G++G+S  + D +  M   +  D   
Sbjct: 525 LIADEEIVIQITYDQFIKRLPIDTFK-RQKRGGKGIQGLSQKRDDVIKIMKAAMTHDNIM 583

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +    Y+               +      +   +  IS       +  ++ +L V+ 
Sbjct: 584 FFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYISSVFTFRGEDMDKDLLLVTR 643

Query: 806 KGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           KGF KR    +F  +      GI A  + +      L+ V  + D D++++ S KG  +R
Sbjct: 644 KGFIKRIQLKEFGNVKK---SGIIAIGLREG---DELIKVESMTDKDEVMIFSKKGLALR 697

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  N IR   R   GV     A+D+ +V + + +E E +
Sbjct: 698 IEGNIIRAQGRTASGVTGMRLAEDDAIVGLSKYKEGEDI 736



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 19/212 (8%)

Query: 705 CVRFPISAIRV-------FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +RF +S ++             S+ V+ I + + ++V  + I      D   +   +  
Sbjct: 434 MIRFSLSEVQSDAILEMRLQRLTSLEVQKI-IDELEEVRKLII---DLKDILAKPSRVNE 489

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +        GD          S      S    ++L   E+ ++ ++   F KR     F
Sbjct: 490 IVCTELQEVGDKYGNKRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTF 549

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRA 876
           +   R GKGI+        +   ++ +       D I+  S+ G +  +   E+ IAS+ 
Sbjct: 550 KRQKRGGKGIQGLSQ----KRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKE 605

Query: 877 TKGVVI---FSTAKDERVVSVERIRESEIVDE 905
            +G  +    +  +DE + SV   R  ++  +
Sbjct: 606 ARGKSLKAIINLREDEYISSVFTFRGEDMDKD 637


>gi|325295342|ref|YP_004281856.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
 gi|325065790|gb|ADY73797.1| DNA gyrase, A subunit [Desulfurobacterium thermolithotrophum DSM
            11699]
          Length = 1247

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/846 (36%), Positives = 479/846 (56%), Gaps = 84/846 (9%)

Query: 61   MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              + V+ + ++V    +    +GK+HPHG+ A+YDAL RMAQD+S+R  LI+GQGNFGS+
Sbjct: 486  YDIQVDEDHEFVANGVVVHNCLGKFHPHGDTAVYDALVRMAQDFSMRYPLIDGQGNFGSI 545

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            DGD  AA RYTE RL K +  LL D+ KDTVDFRPN+D S  EP VL AR+PN+LVNG  
Sbjct: 546  DGDSQAAMRYTEARLSKISIELLKDIEKDTVDFRPNFDESLTEPEVLPARFPNLLVNGSA 605

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GIAVGMATNIP HNL EV      ++D+ + +   L++ ++GPDFPTGA I+    +K  
Sbjct: 606  GIAVGMATNIPPHNLKEVCQAVKYMVDHEEAETHELLQFVKGPDFPTGAEIINPENLKKI 665

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
            Y TGRGS+ IR    IE+    +  IV+TE+PYQVNKAA++++IA+LV+EK+I  I+D+R
Sbjct: 666  YETGRGSVTIRAKHTIEEVRK-KTAIVITELPYQVNKAALIKQIADLVKEKKIDGISDIR 724

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            DESDR+G RVVIELKR A+ +V+LN+LY++T LQ+ F+ NM+AL   +P+   L   LK 
Sbjct: 725  DESDREGIRVVIELKRDATPEVVLNKLYKFTPLQTNFNFNMIALVNGEPKLLNLKTYLKE 784

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F+ FR EV++R+T + L KA  R H+L GL IA+ N++ V+ I+R S +P  A+      
Sbjct: 785  FIEFRREVILRKTTHELKKAEARLHILEGLKIALTNIERVIEIVRSSESPNIAQE----- 839

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                   +    LS+ Q++AIL+++L RLTGL R+ I +E  +L
Sbjct: 840  ---------------------LLEKEFGLSQKQSKAILDMKLQRLTGLEREKIDSEYEAL 878

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              +I+    +LS+R     +IK+++  +       R+T IV    +++ E  I  E++V+
Sbjct: 879  EKDIEYYRFVLSNREEQKRLIKEDIDEIIKNYGDERKTAIVSKESEIDIESMIEEEEVVI 938

Query: 541  TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             ++H G++ R     Y+ Q R G G  G+  R+ DFV D+   S+   +L F++ G VY 
Sbjct: 939  FLTHKGFIARTSAKSYKTQGRSGTGVRGIRTREGDFVKDVITASSKDYLLIFTNQGKVYW 998

Query: 601  EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             K + +P      RG+++ N L    G  + + +   +D S   +  + F T+ G V+R 
Sbjct: 999  LKAYEIPKTEKSTRGQSIRNFLPGMSGAEVVSRIIPVKDFSEKKD--IFFVTQRGYVKRT 1056

Query: 661  KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             LS+F     +G  A+ L+  D ++ V    ++++ILL +K G+ +RF +  +R   GR+
Sbjct: 1057 SLSEFSNPRSTGINAINLEPGDRLIYVGLVEEKDNILLISKGGRAIRFHVQDVRQM-GRS 1115

Query: 721  SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            + GV+G+ L + D++++  +V   D                                   
Sbjct: 1116 ARGVKGMLLDEEDRIMAGTVVQPDDV---------------------------------- 1141

Query: 781  VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ++L V EKG+GKR    +F +  R GKG+ A  +S+  + G 
Sbjct: 1142 ------------------YLLIVMEKGYGKRVLLSEFPLQRRGGKGLIAAKLSE--KTGK 1181

Query: 841  LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            +     + + + +I+VS  G +IRV  +++ + SR T+GV I   +K++ VVSV +++E 
Sbjct: 1182 IADAITLKNEEPVIIVSRNGKIIRVNSSDVPVYSRYTRGVRIQKLSKEDVVVSVSKVQEK 1241

Query: 901  EIVDEA 906
                  
Sbjct: 1242 LEESND 1247



 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 53/67 (79%)

Query: 14 KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
          + I  VSI DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M Q+G+  +K Y K
Sbjct: 2  EKIIPVSIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLYPDKPYKK 61

Query: 74 CARISGE 80
           ARI GE
Sbjct: 62 SARIVGE 68


>gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51]
 gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 808

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/889 (34%), Positives = 475/889 (53%), Gaps = 91/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ IT  S+ + +  SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+  +K Y
Sbjct: 4   PEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+ MGKYHPHG+++IYDA  RMAQ W+ R  LI+GQGNFGS+DGD  AA RYT
Sbjct: 64  SKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   +  +  D+ KD + F+PNYD   +EP+VL + +PN+LVNGG GIAVGMA+NIP
Sbjct: 124 EMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV   +  IDNP + L+ LME ++GPDFPTG +I+G  G   AY +GRG + +R
Sbjct: 184 PHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE     +  IV+TEIP+QV+K+ +  KI       +I  I+++RDESDR+G R+V
Sbjct: 244 GKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
           +E K+ A    IL  LY+YT LQ  F +  + ++    P    L  I ++++  R+EVV+
Sbjct: 304 VECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRKEVVL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S  P  A+  L+ R          
Sbjct: 364 RRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SEVQ +AIL+++L  LT L  D IR E   +   I E   I
Sbjct: 414 ----------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV---VTVSHLGY 547
           L+  +++  IIK EL  + ++    RRT I+   +  E +     E      V ++  G+
Sbjct: 458 LADINKVYTIIKHELKQIAEQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++P    R+Q            +D D + +    ++  ++ FF+  G  Y  K   + 
Sbjct: 518 IKQIPTPTRRSQ----INAIAFAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVA 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G+A+ N+  L + ERI  ++   E++      Y VF TK G V R+ + DF+ 
Sbjct: 574 EAGAKEKGRAVNNLFPLPEEERIVAMVSLREEK---EGQYFVFVTKDGQVMRSPVKDFLN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +   AM L  +DEI+ V     E ++ L +  GQ +RF  + +    GR S GV+G+
Sbjct: 631 ARTAE--AMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPM-GRKSRGVKGM 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+   ++                                              
Sbjct: 688 TLNEGDYVVDALLIQPGADG---------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   +   ++TV+E+G+ KRTS  +++   R+G+GI    +    + G LV++  V
Sbjct: 708 --------ETGDLITVTEQGYVKRTSLVEYKPQGRAGRGIAIAKI-DAEKTGNLVSLIQV 758

Query: 848 NDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +   + ++   GT+  V    ++  SR   G  + +   ++ +V V
Sbjct: 759 GPKEDKLLHIIQAGGTVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 80/261 (30%), Gaps = 26/261 (9%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDS--RDEILSVETCTQEN--DILLTTKLGQCVRFPISA 712
           + +++L    +     +  + L     DE+        E   ++ L TK G      I  
Sbjct: 467 IIKHELKQIAEQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEV-LLTKKGF-----IKQ 520

Query: 713 IRVFAGRNSVGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           I     R+ +     +   GD +   +S                Y           + + 
Sbjct: 521 IPTPTRRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKAKLVAEAGAKEK 580

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
               +       E  I        + + Q+ + V++ G   R+   DF            
Sbjct: 581 GRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDF----------LN 630

Query: 830 TDVSKIN---EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
              ++     E   +V VF      ++ L S +G  IR    E+    R ++GV   +  
Sbjct: 631 ARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLN 690

Query: 887 KDERVVSVERIRESEIVDEAE 907
           + + VV    I+     +  +
Sbjct: 691 EGDYVVDALLIQPGADGETGD 711


>gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
 gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1]
          Length = 843

 Score =  710 bits (1833), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/908 (32%), Positives = 472/908 (51%), Gaps = 98/908 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I   S++ E++ S+L YA++VI  RA+PDL+DGLKPVHRRI++   Q  +  + K+
Sbjct: 18  EKDTIFDKSLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQEKLLNSAKF 77

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G VMG YHPHG+++IY+AL RMAQD+SLR  LIEGQGNFGS+DGD PAA RYT
Sbjct: 78  KKSAALVGTVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDGDSPAAMRYT 137

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K   + LD + ++ VDF  NYD S +EPVVL    PN+L+NG  GIAVG+ATNIP
Sbjct: 138 EARLSKLGEYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGIAVGLATNIP 197

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++  + +I NP+     L++ I GPDFPTG  I   +G+++ ++TG G  ++R
Sbjct: 198 PHNIREVLNAVLDLIKNPNFSELDLLQYITGPDFPTGGEIFRYSGVRDYFSTGSGKFILR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI---------VDIADLRDE 302
               +E+    +  +++ EIPY V K  ++E I +L++  +           +I ++RDE
Sbjct: 258 SKIEVEE-QVKKNLLIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLADNIVEIRDE 316

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           S+ +G R+VIE +    A VI+N LY++T LQ+ +SVN+  L   KPER +L+ +LK ++
Sbjct: 317 SNLEGIRLVIECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGKPERISLLQLLKLYL 376

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             + E++ RRT + L   + R H+L G     +++ E +++I  S NPE           
Sbjct: 377 EHQLEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEE---------- 426

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q   I  L +  L  +    ++ EL +   
Sbjct: 427 -------------------DLRARYSLSDEQLDDIFRLTVGSLKKISISKLQEELVTKTD 467

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVT 541
                  IL+S  +L  +  ++L+ ++D+    RRTR+       ++  +    +  V++
Sbjct: 468 LSIFKESILNSDDKLREVFSEKLIELRDKFGDDRRTRVNMEASGAIDYCELFHFQKTVIS 527

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GY+ + PLS Y+  +RGG G+ G     +D      +      VLFFS  G VYK+
Sbjct: 528 LSHRGYLSQRPLSTYKLHKRGGSGKEGAFHYKDDKPKMFLVCHGKDDVLFFSDSGKVYKK 587

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + + +   + +     N+L           +    + S  +N Y++FAT  G V+R  
Sbjct: 588 KAYEMNLREGKNKATITYNVLPGLSKGEKIVTIIALPEGSYGDNKYLLFATSKGLVKRCS 647

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           +S F +IN++GK+A+ L   D +  V T   ++ + L +  G+ V+F  S IR  + R +
Sbjct: 648 MSLFEKINKNGKVAITLRDGDSLKFVITLENDSHVCLASDSGRMVKFLASEIRP-SSRIA 706

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV GI++  G ++IS +     D                                    
Sbjct: 707 SGVFGINVGSG-ELISASSTYEGD------------------------------------ 729

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK-GIRATDVSKINEIGA 840
                            ++L++SE G GK T   ++ +  R  K G+ A   ++  + G 
Sbjct: 730 -----------------YVLSISELGKGKLTPVSEYSLVKRGKKVGLIAQKTTE--KTGK 770

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++A   V ++D+I+L++++    R  V++I +  R+T GV +F     ERV+   +  E 
Sbjct: 771 VLACTIVRESDEILLLTNQNRQNRFRVSDISVQGRSTSGVNLFKLENKERVIYFAKNFEQ 830

Query: 901 EIVDEAES 908
           E  D+ E 
Sbjct: 831 EESDDLED 838


>gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
 gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413]
          Length = 835

 Score =  709 bits (1830), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/915 (33%), Positives = 483/915 (52%), Gaps = 118/915 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   STGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+ID PD+  + L+E+I GPDFPTG  I+G TGI+ AY TG+G IV+
Sbjct: 189 PPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGETGIREAYITGKGGIVL 248

Query: 251 RGVSHIEKTSGDR-----EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV+ +E+  G R       I+VTE+PYQVNKA  +EK+AELV + R+  I+DLRDESDR
Sbjct: 249 RGVATVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR  +   +L  LY  T+LQ+ F   ++A+   +P + +L  +L+ F+ FR
Sbjct: 309 EGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E  + RR  Y L KA  R + + GL  A++NLDEV+ I+R +P+  TA+           
Sbjct: 369 EHTLNRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAK----------- 417

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                          +     + LSE Q  AIL + L RLT L + +++ E   L  +I 
Sbjct: 418 ---------------VTLCSQLDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQIT 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---------------------VEGL 524
               +LS R  LL  +K++L S+K +   PRRT++                         
Sbjct: 463 LLDRLLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDE 522

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                      E+ ++ ++H GY++R+          G K +    + + DF+    I  
Sbjct: 523 DTENLSPLEPAEEAILEITHRGYLRRIQ--------PGKKSKVENGLLEHDFIIQTNITD 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSW 643
           TH  +L  ++ G +Y  KV  +P+ +    RG  LI +L+         ++       + 
Sbjct: 575 THKELLVLTNGGKLYPVKVGDIPLTTGRSPRGTPLITMLTTTAQGNQEPVVSRLLLPENL 634

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               ++  TK G ++R  L +   + R G   +KL   DE+L  +       ++L +  G
Sbjct: 635 AAQQLILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKAGQHLILASSGG 694

Query: 704 QCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           + +RF  +  +    GR ++G++   L +   ++                          
Sbjct: 695 RLLRFSANDEQLPIMGRTAMGLQAFRLLRNQCMVGCV----------------------- 731

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                            + +++L V+E+G+ KR      + +NR
Sbjct: 732 ------------------------------NAAQAEYLLLVTEEGYAKRLPVNQIKSANR 761

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G ++     +N+   L A+   N + ++ L++++  ++R+  + + I  R  KG  I
Sbjct: 762 GDLGTQSMKF--VNKTDNLAAMVGANTSSEVALLTNRERVVRISTDTVPILPRDGKGETI 819

Query: 883 FSTAKDERVVSVERI 897
               +DE+V++V  +
Sbjct: 820 LQLNRDEKVIAVVEV 834


>gi|296331027|ref|ZP_06873502.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305674544|ref|YP_003866216.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296152032|gb|EFG92906.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305412788|gb|ADM37907.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 807

 Score =  709 bits (1829), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/890 (34%), Positives = 476/890 (53%), Gaps = 92/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K 
Sbjct: 3   SQPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKN 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  I  P   +D LME+I+GPDFPTG +I G  GIK AY TG+G I+I
Sbjct: 183 PPHHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIKKAYETGKGKIII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 243 RGKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV 
Sbjct: 303 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 363 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   LG +I+E   I
Sbjct: 413 ----------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+  +LL +I   L ++K +    RR+        + +  E  +  ED+ VTV+  GY+
Sbjct: 457 LSNDKKLLKVITNSLKALKKKYADKRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 517 KRTSQRSFAASNG-----QDFGMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L NI+++++ E I   +P  E +    + Y++F TK+G V++ +L+ +   
Sbjct: 572 IRWKDMGQHLSNIITIDRDETIVKAIPIKEFD---PSAYLLFFTKNGMVKKTELTHYKAQ 628

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI
Sbjct: 629 RYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAA-GVKGI 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V+S  I+  +D+                                         
Sbjct: 688 NLKEDDFVVSGEILQESDS----------------------------------------- 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F  
Sbjct: 707 ------------IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKRNPH-RVVALFAC 753

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               ++++ ++KG    +   ++R   R + G       +  +V +V R+
Sbjct: 754 GLEQRLMVETEKGERKELQAKDLRTNDRYSNGSFFIDEEESGKVTAVWRL 803



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G ++R     F   N        +   D +L        + +LL T  G  +  
Sbjct: 508 VTVTKDGYLKRTSQRSFAASNGQDF---GMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 564

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +                                                  +   D
Sbjct: 565 PVHQLP------------------------------------------------DIRWKD 576

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  S       +  I +    +      ++L  ++ G  K+T    ++   R  K + 
Sbjct: 577 MGQHLSNIITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQ-RYSKALV 635

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++        L+ V   N   QI + +  G  +    +E+ +      GV   +  +D
Sbjct: 636 ALNLK---GEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKED 692

Query: 889 ERVVSVERIRESEIV 903
           + VVS E ++ES+ +
Sbjct: 693 DFVVSGEILQESDSI 707


>gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2]
 gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2]
          Length = 808

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/889 (34%), Positives = 472/889 (53%), Gaps = 91/889 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ IT  S+ + +  SYL Y+ +VIL RA+PD+RDGLKPVHRRI++ M ++G+  +K Y
Sbjct: 4   PEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+ MGKYHPHG+++IYDA  RMAQ W+ R  LI+GQGNFGS+DGD  AA RYT
Sbjct: 64  SKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   +  +  D+ KD + F+PNYD   +EP+VL + +PN+LVNGG GIAVGMA+NIP
Sbjct: 124 EMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV   +  IDNP + L+ LME ++GPDFPTG +I+G  G   AY +GRG + +R
Sbjct: 184 PHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQGFTEAYRSGRGKVTMR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE     +  IV+TEIP+QV+K+ +  KI       +I  I+++RDESDR+G R+V
Sbjct: 244 GKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
           +E K+ A    IL  LY+YT LQ  F +  + ++    P    L  I  +++  R EVV+
Sbjct: 304 VECKKDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREVVL 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+ RAH+L GL IA+ NLDEV++IIR S  P  A+  L+ R          
Sbjct: 364 RRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITR---------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SEVQ +AIL+++L  LT L  D IR E   +   I E   I
Sbjct: 414 ----------------FEFSEVQAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV---VTVSHLGY 547
           L+  +++  IIK EL  + D+    RRT I+   +  E +     E      V ++  G+
Sbjct: 458 LADINKVYTIIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGF 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K++P    R+Q            +D D + +    ++  ++ FF+  G  Y  K   + 
Sbjct: 518 IKQIPTPTRRSQ----INAIAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVA 573

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G+A+ N+  L + ERI  ++   E++      Y VF TK G V R+ + DF+ 
Sbjct: 574 EAGAKEKGRAVNNLFPLPEEERIVAMVSLREEK---EGQYFVFVTKDGQVMRSPVKDFLN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              +   AM L  +DEI+ V     E ++ L +  GQ +RF  + +    GR S GV+G+
Sbjct: 631 ARTAE--AMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPM-GRKSRGVKGM 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+   ++                                              
Sbjct: 688 TLNEGDYVVDALLIQPGADG---------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   +   ++TV+E+G+ KRTS  +++   R+G+GI    +    + G LV++  V
Sbjct: 708 --------ETGDLITVTEQGYVKRTSLEEYKPQGRAGRGIAIAKI-DAEKTGYLVSLIQV 758

Query: 848 NDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +   + ++   G +  V    ++  SR   G  + +   ++ +V V
Sbjct: 759 GPKEDKLLHIIQAGGAVTGVEAQSLKRESRVKSGAGLVNVIINDYIVHV 807



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 79/261 (30%), Gaps = 26/261 (9%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDS--RDEILSVETCTQEN--DILLTTKLGQCVRFPISA 712
           + +N+L          +  + L     DE+        E   ++ L T+ G      I  
Sbjct: 467 IIKNELKQIADQYGDERRTLILPEDVGDEVDYSAFEEPEKPMEV-LLTRKGF-----IKQ 520

Query: 713 IRVFAGRNSVGVRGISLAKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           I     R+ +     +   GD +   +S                Y           + + 
Sbjct: 521 IPTPTRRSQINAIAFAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVAEAGAKEK 580

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
               +       E  I        + + Q+ + V++ G   R+   DF            
Sbjct: 581 GRAVNNLFPLPEEERIVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDF----------LN 630

Query: 830 TDVSKIN---EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
              ++     E   +V VF      ++ L S +G  IR    E+    R ++GV   +  
Sbjct: 631 ARTAEAMGLKEQDEIVKVFLSAGEGELFLASLQGQAIRFAEAEVNPMGRKSRGVKGMTLN 690

Query: 887 KDERVVSVERIRESEIVDEAE 907
           + + VV    I+     +  +
Sbjct: 691 EGDYVVDALLIQPGADGETGD 711


>gi|257076795|ref|ZP_05571156.1| DNA gyrase subunit A [Ferroplasma acidarmanus fer1]
          Length = 791

 Score =  708 bits (1827), Expect = 0.0,   Method: Composition-based stats.
 Identities = 313/879 (35%), Positives = 479/879 (54%), Gaps = 93/879 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV  +K Y K ARI G
Sbjct: 5   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E MGKYHPHG+++IY+ALARMAQD+SLR  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 65  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 124

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++ D+ K+TV F PN+DGS  EPV   +R P +L+NG  GIAVGMATN+  HNL E+ 
Sbjct: 125 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVPHNLSEIS 184

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  ID+PD  ++ L++ ++GPDFP G +I   + + N Y TG G +  +G    E+ 
Sbjct: 185 DAIMYGIDHPDCSVEDLLKFVQGPDFPGGGMIYRNSDLLNIYRTGHGKVFCQGEIDDEEK 244

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 I++  +PY VNKA  ++ +AE V+   I +I+D+RDESDR G RVVI++K   S
Sbjct: 245 KK----IIIKTLPYGVNKALYIQNVAEQVKNGIISNISDIRDESDRNGIRVVIKIKNDDS 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             + +NQLY +T L++   VN + L   +P+  TL  ++  F+ FR E++ +R+ + +NK
Sbjct: 301 KGLTINQLYEHTPLETTIGVNNLVLLNNEPKVMTLDEMILGFIDFRLEIIRKRSVFEVNK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             DR H+L GL IA+ N+D V++IIR S N + A+  LM +                   
Sbjct: 361 LMDREHILSGLVIALENIDRVIKIIRSSDNADMAKTSLMDQ------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                  + LSE Q  AIL++RL RLTGL    I +EL S+   I+   +I+++ S+   
Sbjct: 402 -------LSLSEKQALAILDMRLQRLTGLEIKKINDELISIKENIERLNEIINNESKRRD 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
           ++KQE L +K +    RRT+++   ++   DED I  E+ ++ +S  G +KRV    Y  
Sbjct: 455 VLKQETLEIKKQFGDVRRTKVLNRDINARNDEDIIPNEESIMILSENGLLKRVSSEEYNV 514

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q+RGGKG      +++  V  +    +H  + FF++ G V + K + +   S  + G   
Sbjct: 515 QKRGGKGTITATRKEDT-VRSILSCMSHDMIYFFTNTGRVLRTKAYTIEKKSRTSLGSVG 573

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
              L +N+ E+I  IM       +    +++  TK G ++R  + + + +  SG   +KL
Sbjct: 574 GTFLKMNENEKIKQIMK----SPASPKNFLIIITKKGFIKRTPVKEILDMRESGLKIIKL 629

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D +DE++SV    + + I +     +   F    +    GR S GV+ + L  G +VI+ 
Sbjct: 630 DDQDEVVSVMDLEKPSKIFVAASNNKAAVFLSDEVSS-TGRASRGVKSMRL-NGAEVINS 687

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +V   D                                                     
Sbjct: 688 FLVDDNDT---------------------------------------------------- 695

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +++++E G GKRT   DF I +R   G      S+    G+LV   PV D+ ++++V+ 
Sbjct: 696 -VMSITENGLGKRTKITDFSIHHRGSSGNLIFKESER--TGSLVTALPVGDSQEVLIVTR 752

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               IR+  +EI+I SR T GV + +   D+ VV+   +
Sbjct: 753 NNKTIRLNSDEIKIQSRVTSGVKLINVDDDDLVVAASVL 791


>gi|308069401|ref|YP_003871006.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
 gi|305858680|gb|ADM70468.1| Topoisomerase IV subunit A [Paenibacillus polymyxa E681]
          Length = 820

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/888 (34%), Positives = 474/888 (53%), Gaps = 90/888 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y 
Sbjct: 4   SEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKAYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+VMG YHPHG+++IYD + RMAQ W +  +L++G GN+GS D DP AA RYTE
Sbjct: 64  KSAKTVGDVMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  +L D+ K TV F+ N+D S +EPVVL +RYPN+LVNG  GI+ G AT IPT
Sbjct: 124 ARLSPIAMEMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H+L EV+D  +AV++ P+I+L+ +M  I+GPDFPTG +I+G  GIK+AY TG+G I IR 
Sbjct: 184 HSLREVIDASIAVMEKPEIELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G ++Q+V+TEIPYQ+ K+ ++  +  +  EK++  IA++RDES R G R+V+
Sbjct: 244 KTEIQSLRGGKQQLVITEIPYQIVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A+ IL  L + T LQ  ++ NMVA+    P +  L  IL+A++A + EVV  R
Sbjct: 304 ELKKEADAEGILAYLLKKTDLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTHR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +Y L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L               
Sbjct: 364 IQYELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL--------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  +IL L+L RLT L    +  EL  +  +I +   IL 
Sbjct: 409 -----------QWMFGFSERQADSILTLQLYRLTNLEITTLEKELGDIQKKIAQYRSILE 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
           S  +L+ +I++ELL ++++    RR+ I   + ++    E  +  ED+++T+S  GYVKR
Sbjct: 458 SDRKLISLIRKELLEIREKYGIDRRSDIQGEVEEIKVNLEVMVGAEDVLLTLSKDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +    R G  RS   +++ D+VT L  V+T   +L F+  G  +   V ++P   
Sbjct: 518 TSMLSF---TRSGGERSSSGVKEGDYVTQLLDVNTLDILLVFTQRGQYFLLPVHQVPEYK 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G  ++N++ L++ +RI +++P    E    +  +VF TK G V+R +L ++     
Sbjct: 575 WKEPGTPIVNVIPLSKEDRIVSVIPLKNIEEIGKS--LVFVTKKGQVKRTELKEYATKRS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           S   A K+   DE+LSV       DI+L T+ G  +RF    +    GR S GV+GI LA
Sbjct: 633 SAVAACKVAGDDEVLSVTLSEGTRDIMLITRAGMSIRFKEQEVNAM-GRVSAGVKGIQLA 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD++I+   V   + +                                           
Sbjct: 692 EGDEIIAALWVEEDEGE------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK----INEIGALVAVFP 846
                    +L ++E G+GKRT   D+    R GKGI   +  +     +    +VA F 
Sbjct: 709 ---------VLVLTESGYGKRTLLLDYPTQGRGGKGITTFEFKEGKRVRSNGTRIVAAFY 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  Q+  ++ +G  +     +  +  R   G ++    K + +V+V
Sbjct: 760 CREAVQLFAITAEGQTMSFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 15/216 (6%)

Query: 693 ENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           E+ +L  +K G   R  + +  R    R+S GV+     +GD V  +  V   D      
Sbjct: 503 EDVLLTLSKDGYVKRTSMLSFTRSGGERSSSGVK-----EGDYVTQLLDVNTLDILLVFT 557

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKND----SSVEGNISEERCQELKLKEQFILTVSEKG 807
                 +    ++     +E  +   +    S  +  +S    + ++   + ++ V++KG
Sbjct: 558 QRGQYFLLPVHQVPEYKWKEPGTPIVNVIPLSKEDRIVSVIPLKNIEEIGKSLVFVTKKG 617

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KRT   ++  + R    + A  V+       +++V        I+L++  G  IR   
Sbjct: 618 QVKRTELKEY-ATKR-SSAVAACKVA---GDDEVLSVTLSEGTRDIMLITRAGMSIRFKE 672

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            E+    R + GV     A+ + +++   + E E  
Sbjct: 673 QEVNAMGRVSAGVKGIQLAEGDEIIAALWVEEDEGE 708



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           ++ L+    +     ++D   E    +   + +   E  +LT+S+ G+ KRTS   F  S
Sbjct: 467 RKELLEIREKYGIDRRSDIQGEVEEIKVNLEVMVGAEDVLLTLSKDGYVKRTSMLSFTRS 526

Query: 821 N--RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              RS  G++        E   +  +  VN  D +++ + +G    +PV+++        
Sbjct: 527 GGERSSSGVK--------EGDYVTQLLDVNTLDILLVFTQRGQYFLLPVHQVPEYKWKEP 578

Query: 879 G---VVIFSTAKDERVVSVERIRESEIV 903
           G   V +   +K++R+VSV  ++  E +
Sbjct: 579 GTPIVNVIPLSKEDRIVSVIPLKNIEEI 606


>gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 850

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 331/865 (38%), Positives = 487/865 (56%), Gaps = 52/865 (6%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++   +      + + +  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+
Sbjct: 1   MSDERTTDARHISDTERVRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G      + K +R+ GEVMG YHPHG+AAIYDALAR+ Q WSLR  L+ GQGNFG
Sbjct: 61  AMYDGGYRPASSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +     PAA RYTEC++   A  ++ D+ ++ VDF+ NYDG  QEP +L AR+PN+L NG
Sbjct: 121 TPGNLGPAAPRYTECKMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGR 234
             GIAVGMAT IP HNL E+  G    +D+        L+AL+++I GPDFPTGA ILG 
Sbjct: 181 SEGIAVGMATRIPPHNLRELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATILGH 240

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI++AY TGRGSI  R V  +E+    R+ +VVTE+PYQVN   + +KIA+LVR+ +I 
Sbjct: 241 KGIEDAYRTGRGSITQRAVVSVEEIQ-GRQCLVVTELPYQVNPDNLADKIAQLVRDGQIQ 299

Query: 295 DIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            IAD+RDE S R G R+VI LKR A A V+LN LY+ T LQ  FS NM+AL    P   +
Sbjct: 300 GIADIRDETSGRTGQRLVIVLKRDAVAKVVLNNLYKRTPLQENFSANMLALVDGVPRTLS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           + G ++ ++  + +V+VRRT++ L KA +R H+L G   A+  LDEV+ +IR SP  + A
Sbjct: 360 IDGFIRHWITHQIDVIVRRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVDEA 419

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           R               LIDL+D  +             VQ  AIL L+L RL  L R  I
Sbjct: 420 RAG-------------LIDLLDVDA-------------VQADAILALQLRRLAALERQKI 453

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
            +E   L   + +  DIL    R   II +EL  + D+    RRT I+    +M  ED I
Sbjct: 454 LDEHAQLKARVDDLRDILDKPERQRTIISEELSEIVDKFGDERRTTILPFDGEMSMEDLI 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED+VVT++  G+ KR     YR+Q+RGGKG  G  +R  D V   F+ +TH  +LFF+
Sbjct: 514 PEEDVVVTITRDGFAKRTRTDNYRSQKRGGKGVRGTQLRGGDVVEHFFVTTTHHWLLFFT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG VY+ K + +P G   A+G+ + N+L+    ERI  ++     E   +  ++V ATK
Sbjct: 574 NLGRVYRAKAYEIPEGGRDAKGQHVANLLAFQPDERIAQVLAIRTYE---DADHLVLATK 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQENDILLTTKLGQCVRF 708
            G V+++ L+ +      G IA+ L        DE++S +T   + D++L ++ GQ VRF
Sbjct: 631 SGLVKKSPLALYNSPRSGGIIAINLREDEAGNPDELVSAQTIMADQDLILVSRDGQAVRF 690

Query: 709 PISA--IRVFAGRNSVGVRGISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLI 765
             +   +R   GR++ GVRG+     D+++SM + V   D        Y K         
Sbjct: 691 AATDEQLRPM-GRSTSGVRGMKFRGDDELLSMEVPVEGTDLLIVTESGYAKRTPVAEYPT 749

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                    +   S   G +       +   ++ ++ ++E G   + ++ D R ++R+  
Sbjct: 750 KSRGTMGVRVGKLSDERGGLV---GALVVKPDEDVMVITESGKLVQVNASDVRPTSRNTM 806

Query: 826 GIRATDVSKINEIGALVAVFPVNDN 850
           G+     ++ +    ++A+   +D+
Sbjct: 807 GVI---FARPDADDRIIAITRNSDS 828


>gi|291484421|dbj|BAI85496.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. natto
           BEST195]
          Length = 806

 Score =  708 bits (1826), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/890 (33%), Positives = 475/890 (53%), Gaps = 92/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K 
Sbjct: 2   SQPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+I
Sbjct: 182 PPHHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 242 RGKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV 
Sbjct: 302 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   LG +I+E   I
Sbjct: 412 ----------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+  +LL +I   L ++K +    RR+        + +  E  +  ED+ VTV+  GY+
Sbjct: 456 LSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNG-----QDFGMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+   N++++++ E I   +P  E +    + Y++F TK+G V++ +L+ +   
Sbjct: 571 IRWKDMGQHFSNLITIDRDETIVKAIPIKEFD---PSAYLLFFTKNGMVKKTELTHYKAQ 627

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI
Sbjct: 628 RYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V+S  I+  +D+                                         
Sbjct: 687 NLKEDDFVVSGEILQQSDS----------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F  
Sbjct: 706 ------------IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFAC 752

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               +++  ++KG    +   E+R   R + G   F   +  +V +V R+
Sbjct: 753 GLEQRLMAETEKGDRKELQAKELRTNDRYSNGSFFFDEEESGKVTAVWRL 802



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G ++R     F   N        +   D +L        + +LL T  G  +  
Sbjct: 507 VTVTKDGYLKRTSQRSFAASNGQDF---GMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 563

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +                                                  +   D
Sbjct: 564 PVHQLP------------------------------------------------DIRWKD 575

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  S       +  I +    +      ++L  ++ G  K+T    ++   R  K + 
Sbjct: 576 MGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQ-RYSKALV 634

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++        L+ V   N   QI + +  G  +    +E+ +      GV   +  +D
Sbjct: 635 ALNLK---GEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKED 691

Query: 889 ERVVSVERIRESEIV 903
           + VVS E +++S+ +
Sbjct: 692 DFVVSGEILQQSDSI 706


>gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC]
 gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC]
          Length = 830

 Score =  707 bits (1825), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/851 (38%), Positives = 501/851 (58%), Gaps = 43/851 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQ+W++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FL++DL KDTVD   NYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ NP+  ++ ++E++ GPDFPTG +I G  GI++ Y TGRG I +
Sbjct: 183 PPHNLGELIEATLLVLSNPNASIEEILEVMPGPDFPTGGIICGGEGIRSTYHTGRGKIKV 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ +    E I++TE+PY VNK+ ++E+IA+LV +K +  I+D+RDESD+ G R
Sbjct: 243 RARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S+++++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R EV+
Sbjct: 303 VVLELKKGESSEIVINRLYKFTDIQVTFGANMLALDKNLPRTMNIHRMISAWIRHRTEVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ LDEVVR IR S + E A+ +L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q+ AILELRL +LTGL  + I+ E + L  +I     
Sbjct: 413 ----------------NFGFTEQQSVAILELRLYQLTGLEAEKIQKEYDELLNKIAYYKR 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYV 548
           +L+    +  II+ EL  ++    TPRRTRI        + ED I  E +++T+S   YV
Sbjct: 457 VLADEGLVKDIIRNELQDIQRVHKTPRRTRIEFDADDIRDIEDIITNEPVIITISGDDYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           KR+P+ V+R Q+RGG G SG  M+   DF+  ++  ST   +L F++ G  Y  KVW+LP
Sbjct: 517 KRMPIKVFREQKRGGHGVSGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLP 576

Query: 608 IGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            G  +A+GK +IN L  +  GE++  ++     E   N  ++  ATKHG V++  L  F 
Sbjct: 577 EGERRAKGKPIINFLEGIRPGEQLAAVLNVKNFE---NAGFLFLATKHGVVKKVALEAFS 633

Query: 667 QINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              + G  A+++D  DE++ +    ++E  ++L T+LG  VRFP   +R   GR + GVR
Sbjct: 634 NPRKKGIRALEIDDGDELIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPM-GRTARGVR 692

Query: 726 GISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           G+SL  + D+V++  IV   D      +C        +     +T           +   
Sbjct: 693 GVSLKNENDRVVACQIVK--DDQSVLVVCDNGFGKRSQVGDFRETNRGGVGVRSILINER 750

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +            IL +S +G   R +  D R+  RS +G+R   V   +    LVA+
Sbjct: 751 NGDVLGAISVTDNDSILLMSAQGQAIRINMQDVRVMGRSTQGVRLVHVKDGDI---LVAM 807

Query: 845 --FPVNDNDQI 853
               +N+++ +
Sbjct: 808 EKLSLNEDETL 818


>gi|221309698|ref|ZP_03591545.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314020|ref|ZP_03595825.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221318942|ref|ZP_03600236.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323216|ref|ZP_03604510.1| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767425|ref|NP_389692.2| DNA topoisomerase IV subunit A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|239938679|sp|Q45066|PARC_BACSU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2558947|gb|AAB81615.1| ParC [Bacillus subtilis]
 gi|225185052|emb|CAB13693.2| subunit A of DNA topoisomerase IV [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 806

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/890 (33%), Positives = 475/890 (53%), Gaps = 92/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K 
Sbjct: 2   SQPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+I
Sbjct: 182 PPHHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKIII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 242 RGKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV 
Sbjct: 302 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   LG +I+E   I
Sbjct: 412 ----------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+  +LL +I   L ++K +    RR+        + +  E  +  ED+ VTV+  GY+
Sbjct: 456 LSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNG-----QDFGMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+   N++++++ E I   +P  E +    + Y++F TK+G V++ +L+ +   
Sbjct: 571 IRWKDMGQHFSNLITIDRDETIVKAIPIKEFD---PSAYLLFFTKNGMVKKTELTHYKAQ 627

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI
Sbjct: 628 RYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V+S  I+  +D+                                         
Sbjct: 687 NLKEDDFVVSGEILQQSDS----------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F  
Sbjct: 706 ------------IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFAC 752

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               +++  ++KG    +   E+R   R + G   F   +  +V +V R+
Sbjct: 753 GLEQRLMAETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRL 802



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G ++R     F   N        +   D +L        + +LL T  G  +  
Sbjct: 507 VTVTKDGYLKRTSQRSFAASNGQDF---GMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 563

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +                                                  +   D
Sbjct: 564 PVHQLP------------------------------------------------DIRWKD 575

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  S       +  I +    +      ++L  ++ G  K+T    ++   R  K + 
Sbjct: 576 MGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQ-RYSKALV 634

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++        L+ V   N   QI + +  G  +    +E+ +      GV   +  +D
Sbjct: 635 ALNLK---GEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKED 691

Query: 889 ERVVSVERIRESEIV 903
           + VVS E +++S+ +
Sbjct: 692 DFVVSGEILQQSDSI 706


>gi|1405462|emb|CAA97607.1| GrlA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 806

 Score =  706 bits (1822), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/890 (33%), Positives = 475/890 (53%), Gaps = 92/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K 
Sbjct: 2   SQPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+I
Sbjct: 182 PPHHLGEVIDAVIKRIQMPSCSVDELMELIKGPDFPTGGIIQGVDGIRKAYETGKGKIII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 242 RGKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV 
Sbjct: 302 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   LG +I+E   I
Sbjct: 412 ----------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+  +LL +I   L ++K +    RR+        + +  E  +  ED+ VTV+  GY+
Sbjct: 456 LSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNG-----QDFGMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+   N++++++ E I   +P  E +    + Y++F TK+G V++ +L+ +   
Sbjct: 571 IRWKDMGQHFSNLITIDRDETIVKAIPIKEFD---PSAYLLFFTKNGMVKKTELTHYKAQ 627

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI
Sbjct: 628 RYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V+S  I+  +D+                                         
Sbjct: 687 NLKEDDFVVSGEILQQSDS----------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F  
Sbjct: 706 ------------IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFAC 752

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               +++  ++KG    +   E+R   R + G   F   +  +V +V R+
Sbjct: 753 GLEQRLMAETEKGDRKELQTKELRTNDRYSNGSFFFDEEESGKVTAVWRL 802



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G ++R     F   N        +   D +L        + +LL T  G  +  
Sbjct: 507 VTVTKDGYLKRTSQRSFAASNGQDF---GMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 563

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +                                                  +   D
Sbjct: 564 PVHQLP------------------------------------------------DIRWKD 575

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  S       +  I +    +      ++L  ++ G  K+T    ++   R  K + 
Sbjct: 576 MGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQ-RYSKALV 634

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++        L+ V   N   QI + +  G  +    +E+ +      GV   +  +D
Sbjct: 635 ALNLK---GEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKED 691

Query: 889 ERVVSVERIRESEIV 903
           + VVS E +++S+ +
Sbjct: 692 DFVVSGEILQQSDSI 706


>gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
 gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505]
          Length = 838

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/916 (35%), Positives = 494/916 (53%), Gaps = 115/916 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + S ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   NTGQVVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL    H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+ID+PD+  + L+E+I GPDFPTG  I+G  GIK AY TG+G I++
Sbjct: 189 PPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGSGGIKEAYNTGKGGIIL 248

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV  +E          R  I+VTE+PYQVNKA  +EK+A+LV + R+  I+DLRDESDR
Sbjct: 249 RGVVSLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           QG RVVIELKR A+ + ++ QLY  T+LQ+ F   ++AL   +P + +L  +L+ F+ FR
Sbjct: 309 QGMRVVIELKRDANPEEVIGQLYHQTALQTTFGAILLALVEGQPRQLSLRQMLQEFLRFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+ + RR  Y L KA +RA ++ GL  A+  +DEV+ I+R SP+  TA+  L Q+     
Sbjct: 369 EDTLNRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKMVLCQQ----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + L+E Q  AIL + L RLT L R +++ E + L  +I 
Sbjct: 424 ---------------------LDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQIT 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------------------GLLD 526
               +L  R  LL  +K++L ++K +    RRT+++                        
Sbjct: 463 SLRRLLEDRRELLKSLKKDLRTIKRKYGDTRRTKLIPGQIAVKADKVNNQPSSPGEKEKS 522

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              ++    E  ++  +H GYV+R+     +A       ++  +M D DF+    I +TH
Sbjct: 523 KISQEEQPPEPAILEFTHRGYVRRLAPGSKKA-------KAETIMGDNDFLIQTEITNTH 575

Query: 587 TSVLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
             +L  ++ G VY  KV  + PI     RG  LI +L+      +  I+       + + 
Sbjct: 576 QDLLILNTSGKVYPAKVGDISPISPRSPRGIPLITLLTNTAQGNVEGILGRFTLPETKDT 635

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +V  TK G ++R  L +   +++ G   +K+   D++   +     ++++L +  G+C
Sbjct: 636 HDMVIVTKQGRIKRISLEELTNVSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRC 695

Query: 706 VRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF I+  +    GR ++G++   + K  Q+I    +                       
Sbjct: 696 LRFAINDDQLPVMGRGAMGLQSFRILKSQQIIGCVAI----------------------- 732

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                          +E+ +L V+++G+ K+ SS   R  NR  
Sbjct: 733 ------------------------------GQEENLLLVTQEGYAKKISSSSLRAGNRGD 762

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G +       N+   LVA+   N + ++ LV++K  +I+  +  I I  R  +G  I  
Sbjct: 763 LGTQMLKF--HNKTDNLVAITRTNSSQEVALVTNKDRVIKTSIESIPILDRDARGENILP 820

Query: 885 TAKDERVVSVERIRES 900
             +DE + SV  + E+
Sbjct: 821 MTRDEIITSVVLVLET 836



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 61/287 (21%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N    + GE+  + +   E         ++  T  G VRR             +  M  
Sbjct: 509 VNNQPSSPGEKEKSKISQEE---QPPEPAILEFTHRGYVRRLAPG---SKKAKAETIMG- 561

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              D ++  E      D+L+    G+     +  I   + R+  G+  I+L         
Sbjct: 562 -DNDFLIQTEITNTHQDLLILNTSGKVYPAKVGDISPISPRSPRGIPLITL--------- 611

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                                              +     +VEG +      E K    
Sbjct: 612 ----------------------------------LTNTAQGNVEGILGRFTLPETKDTHD 637

Query: 799 FILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            +  V+++G  KR S  +   +S R         + K+ +   L      N N  +IL S
Sbjct: 638 MV-IVTKQGRIKRISLEELTNVSKRG------ITILKVKDDDQLCFAQLTNPNHNLILAS 690

Query: 858 DKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             G  +R  +N+  + +  R   G+  F   K ++++    I + E 
Sbjct: 691 SGGRCLRFAINDDQLPVMGRGAMGLQSFRILKSQQIIGCVAIGQEEN 737


>gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
 gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120]
          Length = 835

 Score =  706 bits (1821), Expect = 0.0,   Method: Composition-based stats.
 Identities = 312/915 (34%), Positives = 483/915 (52%), Gaps = 118/915 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   STGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +H  +L ++G++TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+ID PD+  + L+E+I GPDFPTG  I+G  GI+ AY TG+GSIV+
Sbjct: 189 PPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIVGEAGIREAYITGKGSIVL 248

Query: 251 RGVSHIEKTSGDR-----EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV+ +E+  G R       I+VTE+PYQVNKA  +EK+AELV + R+  I+DLRDESDR
Sbjct: 249 RGVATVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR  +   +L  LY  T+LQ+ F   ++A+   +P + +L  +L+ F+ FR
Sbjct: 309 EGMRVVIELKRDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQPRQLSLRQLLQEFLNFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E  + RR  Y L KA  R + + GL  A++ LDEV+ I+R +P+  TA+  L  R     
Sbjct: 369 ENTLNRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCSR----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + LSE Q  AIL + L RLT L + +++ E   L  +I 
Sbjct: 424 ---------------------LDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQIT 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---------------------VEGL 524
               +LS R  LL  +K++L S+K +   PRRT++                         
Sbjct: 463 LLDRLLSDRKELLKALKKDLRSLKRKYGDPRRTKLGAKSLEELPKNKKADKQNSSAKTDE 522

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                      E+ ++ ++H GY++R+          G K +    + + DF+    I  
Sbjct: 523 DTENLSPLEPAEEAILEITHRGYLRRIQ--------PGKKSKVENGLLEHDFIIQTNITD 574

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSW 643
           TH  +L  ++ G +Y  KV  +P  +    RG  LI +L+         ++       + 
Sbjct: 575 THKELLILTNGGKLYPVKVGDIPPTTGRSPRGTPLITMLTSTAQGNQEPVVSRLLLPENL 634

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               ++  TK G ++R  L +   + R G   +KL   DE+L  +       ++L +  G
Sbjct: 635 AAQQLILLTKQGRIKRLSLEELTNLTRRGVTILKLKDDDELLLTQFSKPGQQLILASSGG 694

Query: 704 QCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           + +RF  +  +    GR ++G++   L +  +++                          
Sbjct: 695 RLLRFSTNDEQLPIMGRTAMGLQAFRLLRNQRMVGCV----------------------- 731

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                            + + +L V+E+G+ KR      + +NR
Sbjct: 732 ------------------------------NAAQAEHLLLVTEEGYAKRLPVNQIKSANR 761

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G ++     +N+   L A+   N + ++ L++++  ++R+P + + I  R  KG  I
Sbjct: 762 GDLGTQSMKF--VNKTDNLAAMVGANTSGEMALLTNRERVVRIPTDTVPILPRDGKGESI 819

Query: 883 FSTAKDERVVSVERI 897
               +DE+V++V  +
Sbjct: 820 LQLNRDEKVIAVVEV 834


>gi|311068377|ref|YP_003973300.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
 gi|310868894|gb|ADP32369.1| DNA topoisomerase IV subunit A [Bacillus atrophaeus 1942]
          Length = 806

 Score =  705 bits (1820), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/894 (33%), Positives = 476/894 (53%), Gaps = 92/894 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++ +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K 
Sbjct: 2   QQPEIFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTSDKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSPIASELLRDIDKNTVEFVSNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  ID+PD  +  LME+I+GPDFPTG +I G  GI+ AY TG+G +++
Sbjct: 182 PPHHLGEVIDAVIKRIDSPDCTVTELMEVIKGPDFPTGGIIQGVDGIRKAYETGKGKVIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + +E   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 242 RGKAEVETIRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++A ++EVV 
Sbjct: 302 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLTAILDAYIAHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 NRSIYELQKAKDRHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLISK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I+E   I
Sbjct: 412 ----------------FEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKNIQELESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L++  +LL +I   L  +K      RR+        + +  E  +  ED+ VTV+  GY+
Sbjct: 456 LNNDKKLLKVITSSLKKLKKTYADGRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNG-----QDFGMKDTDRLLHQFEMNTTDVLLMFTNKGSYIYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+   N++S+++ E I   +P  E +    + Y++F TK+G V++ +L+ +   
Sbjct: 571 IRWKDMGQHFTNMISIDRDETIVKAIPIKEFD---PSAYLLFFTKNGMVKKTELTHYKAQ 627

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ +   DE+  V     E+ + + T LG  + F    + V   R + GV+GI
Sbjct: 628 RYSKALVALNVKGDDELTDVHVTNGESQLFIATHLGYGLWFGEDEVNVVGARAA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GD V+S  I+  AD+                                         
Sbjct: 687 NLKEGDFVVSGQILHEADS----------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ++  +++G  KR S  +F  ++R+ +G+      K N     VAVF  
Sbjct: 706 ------------LVLATQRGAVKRMSLSEFDKTSRAKRGVIMLRELKKNPH-RAVAVFAC 752

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              D+++  ++KG    + V E+R   R + G  +    +  +V++  R+ + E
Sbjct: 753 RLTDRLMFETEKGETKELLVKELRTNDRYSNGSFLIDEEEAGKVIAAWRLEKEE 806


>gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
 gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453]
          Length = 819

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/900 (33%), Positives = 480/900 (53%), Gaps = 90/900 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y 
Sbjct: 4   SEQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE
Sbjct: 64  KSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSSIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D C+AV+  P+I+L  +M  I+GPDFPT  +I+G  GI +AY TG+G + +R 
Sbjct: 184 HNLREVIDACIAVMQKPEIELAEIMTFIKGPDFPTSGIIMGGEGILDAYRTGKGRVYLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+
Sbjct: 244 KTDIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A+ IL  L + T LQ  ++ NMVA+    P++  L  +L A++  + EVV  R
Sbjct: 304 ELKKDADANGILAYLLKKTDLQITYNFNMVAIVNKTPQQLGLKAMLTAYIEHQREVVTNR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L               
Sbjct: 364 TQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL--------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  +IL L+L RLT L    ++ EL+ L  +I+    IL 
Sbjct: 409 -----------QWMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILD 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
           S  +L+ +I++ELL ++++    RR+ I E + ++    E  +  ED++VT+S+ GY+KR
Sbjct: 458 SDKKLIAVIRKELLEIREKYGIERRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +    R G       ++D D++T LF V+T  ++L F+S G  +   V ++P   
Sbjct: 518 TSMLSF---TRSGGELGSSGVKDGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQIPEYK 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G A++N++ + + + I +++P    E    +  +VF ++ G V+R +L D+     
Sbjct: 575 WKDAGTAIVNVIQVPKEDNIVSVIPVSNFEDPGKS--LVFVSRKGQVKRTELKDYATKRA 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               A K+ + D I+ V       DI+L +K G  +RF    +    GR S GVRGI L 
Sbjct: 633 GAVAAAKVAADDSIIQVVMSDGHKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V++   V + + +                                           
Sbjct: 692 DGDEVVAALWVENDEGE------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE----IGALVAVFP 846
                    ILT+++ G+GKR+   D++  +R GKG+   +  +         A+   F 
Sbjct: 709 ---------ILTITDLGYGKRSLLLDYQAQSRGGKGMATFEFKEGKRVKPNGSAIAGAFY 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             +  QI+  S+ G    +   ++ IA R + G ++    K  ++V +  +  +E   E+
Sbjct: 760 CREPLQIMAYSEDGQAYPIHTEQVPIAERKSIGKLLADVGKKGQIVDLVNLPITETGKES 819


>gi|168705215|ref|ZP_02737492.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 883

 Score =  705 bits (1819), Expect = 0.0,   Method: Composition-based stats.
 Identities = 320/827 (38%), Positives = 474/827 (57%), Gaps = 71/827 (8%)

Query: 1   MTEHIISSDEEEE-------KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +         E         I  + I DE+++SYLTYA +VI+ RA+PD+RDGLKP  
Sbjct: 1   MADATTPPSGPNEPPAAGAVAPINPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQ 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M  +G+       KCA I GE M +YHPHG+A+IYD+L RMAQDW+LR  L+ G
Sbjct: 61  RRILVAMNDLGLGPASSTSKCAGIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+ G PPAA RYTE RL  AA  LL+DL +DTVDF  NYDG ++EP+VL  ++PN
Sbjct: 121 QGNFGSIAGLPPAAHRYTEARLTPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMAT+IP HNL EV    V ++DNP   L  L++II GPDFPTG +I+G
Sbjct: 181 LLVNGSDGIAVGMATHIPPHNLREVCKALVLLLDNPGATLADLIQIIPGPDFPTGGIIMG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSH-IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           R G+  AYA G G I +R  +  +E+  G    I+++E+P+QV + A++E+IA LV+E+R
Sbjct: 241 RQGLLEAYARGAGKITLRARAQVMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEER 300

Query: 293 IVDIADLRDESDRQG---YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           I D++ +RDES  +     R+++E+KRG    ++LNQLY+YT LQ   S+ M+AL   +P
Sbjct: 301 IPDVSGVRDESSARNGEPVRLIVEIKRGKDPHLVLNQLYQYTKLQKTVSIIMLALVDGRP 360

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
              TL  +L+ F+  R  V+ RRT++LL +A+ R HVL G  IA+A++++V++I R SPN
Sbjct: 361 RELTLKEMLQKFLDHRVHVIRRRTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPN 420

Query: 410 PETARRELMQRSWNASDIKDLIDL--IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
              A+  L   +  A+ ++  I           +G+     ++E Q  A++ LRL +L  
Sbjct: 421 RAEAKARLQGLAVPAALMQRAIGEGAFAALQRELGAVAEYRMTEQQAEAVVNLRLGQLAA 480

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L  ++I  E   L   I+    +LS  + +  +I+++L  +  +    R+T + +   D+
Sbjct: 481 LESEEILKEYLQLRELIRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDV 540

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + ED IV E  VVT+SH G+VKR+ L+ YR Q RGG       +RD DFV   F+ ST  
Sbjct: 541 DMEDLIVDEPNVVTISHEGFVKRMALTEYRVQGRGG-KGVQGGLRDNDFVEHFFVASTKA 599

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F++ G +Y  KV+R+P     + G+A+ N+LSL +GE+I++I+P  E        +
Sbjct: 600 YLLCFANTGRMYWLKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFV---EGAH 656

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ AT+ G V++  L  +  + + G I + LD  DE+++V      ++++L+T+ G  +R
Sbjct: 657 LLMATRQGTVKKTDLMAYSNVRQGGIIGITLDEGDELINVALTRANDEVVLSTQKGMAIR 716

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  SAIR   GR + GVRGI L K D ++ M +                           
Sbjct: 717 FRESAIRPM-GRTARGVRGIKLGKDDALVGMVVADPDG---------------------- 753

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                           +LTV E G+GKRT  
Sbjct: 754 -------------------------------LLLTVCENGYGKRTPF 769



 Score = 95.2 bits (235), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 92/272 (33%), Gaps = 63/272 (23%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQINRSGKIAMKLDSRDEILSVETCTQEN 694
              ++   +   VV  +  G V+R  L+++ +Q      +   L   D +      + + 
Sbjct: 540 VDMEDLIVDEPNVVTISHEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKA 599

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI----SLAKGDQVISMAIVLHADADYDE 750
            +L     G+     +  I   AGR S G R I    SLA+G+++ S+  V         
Sbjct: 600 YLLCFANTGRMYWLKVYRI-PTAGRTSPG-RAIANVLSLAEGEKISSIVPVRE------- 650

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                       ++   +L  + +G  K
Sbjct: 651 -------------------------------------------FVEGAHLLMATRQGTVK 667

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +T    +    +   GI    + +      L+ V     ND+++L + KG  IR   + I
Sbjct: 668 KTDLMAYSNVRQG--GIIGITLDEG---DELINVALTRANDEVVLSTQKGMAIRFRESAI 722

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           R   R  +GV      KD+ +V +  + + + 
Sbjct: 723 RPMGRTARGVRGIKLGKDDALVGM-VVADPDG 753



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +      Y+  +    ++ A  R               + V  +  +   ++L + E  +
Sbjct: 493 LRELIRGYETLLSDDANIHAVIREDLERMAAKYGDDRKTEVSDDGGDVDMEDLIVDEPNV 552

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +GF KR +  ++R+  R            + +   +   F  +    ++  ++ G
Sbjct: 553 VTISHEGFVKRMALTEYRVQGR----GGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTG 608

Query: 861 TLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRE 899
            +  + V  I  A R + G  I +    A+ E++ S+  +RE
Sbjct: 609 RMYWLKVYRIPTAGRTSPGRAIANVLSLAEGEKISSIVPVRE 650


>gi|229544206|ref|ZP_04433265.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
 gi|229325345|gb|EEN91021.1| DNA topoisomerase IV, A subunit [Bacillus coagulans 36D1]
          Length = 815

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/898 (32%), Positives = 479/898 (53%), Gaps = 90/898 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 5   ERFQDLPLEEVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTADKHFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDP AA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSIDGDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EPVVL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 125 RLAPIASELLHDIDKETVKFIPNFDDTANEPVVLPARFPNLLVNGSTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGE++DG +  ++NPD  ++ LM +I+GPDFPTG ++ G  GIK AY TG+G +V+RG 
Sbjct: 185 HLGEIIDGAIMRMENPDCTVEDLMTVIKGPDFPTGGIVQGIDGIKKAYETGKGKMVVRGR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G R+QIV+ EIPY+VNKA +++KI EL  ++++  I+++RDE+DR G R+VIE
Sbjct: 245 TSIEEIRGGRKQIVIAEIPYEVNKANLVKKIDELRIDRKVEGISEVRDETDRTGLRIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A AD +LN L++ T LQ  ++ NMVA++  +P+   L  +L A++  ++EVV +RT
Sbjct: 305 LKKDADADSVLNYLFKNTDLQVSYNFNMVAIHNRRPQLMGLRELLDAYIEHQKEVVTKRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KARDR H++ GL  A++ LDEV+  IR S + + A+  L+ +             
Sbjct: 365 EFDLKKARDRKHIVDGLMKALSILDEVIAAIRASKDKKDAKANLIAK------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      + NE   L  +I+  L ILSS
Sbjct: 412 -------------FAFTEPQAEAIVTLQLYRLTNTDITTLENEAADLEKKIETYLAILSS 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             +L  +IK+EL  ++ +    RRT I      L +  E  I  ED++VT++  GY+KR 
Sbjct: 459 EKKLFTVIKKELRDIRKKYADNRRTTIEAEIQELKINLEAMIPNEDVMVTITKDGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y A          + ++D D +     ++T  +VL F++ G      V  LP    
Sbjct: 519 SLRSYTASNG-----RDLAIKDSDRLLFKQQLNTVQTVLLFTNKGSYIYLPVHELPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N+++L + E I  ++P  +        +++F TK+G  ++ +L  +     S
Sbjct: 574 KDLGQHVSNLVTLERDEGIIKVLPIEDFN---QPQFILFFTKNGMAKKTELQQYQAQRYS 630

Query: 672 GKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             + A+ L   DE+L V       ++ L ++LG  +RF  + I    G+ + GV+G++L 
Sbjct: 631 KALVAINLKGDDEVLDVHLTDGSKEVFLASRLGYGLRFDEAEI-SVVGQRAAGVKGMNLK 689

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD+++S  I+   + D                                           
Sbjct: 690 EGDRLVSGKIIEDPEKDK------------------------------------------ 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    +   +++G  K+    +F  ++R+ +G+      K +    +       D+
Sbjct: 708 ---------VFIATQRGAVKKMKVSEFDKTSRAKRGVIMLRELKAHPH-RIAGAVIAGDD 757

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           + + ++++KG    + ++++R   R + G       ++  V  V +    E   E   
Sbjct: 758 ETVSVITEKGHQEDIRLHDLRDHDRYSNGSFAIDEEENGTVAEVWKQEPEEGAAEEND 815


>gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A
 gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 903

 Score =  704 bits (1817), Expect = 0.0,   Method: Composition-based stats.
 Identities = 342/903 (37%), Positives = 515/903 (57%), Gaps = 90/903 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E ++   + +        +  +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M
Sbjct: 1   MSEEMVPGSQFKSL------VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++GV  NK  VK ARI G+V+GKYHPHG+ A+YD LARMAQD+SLR  L+ GQGNFGS+
Sbjct: 55  HKLGVVPNKGTVKSARIVGDVIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++      +L+DL K+TVD  PNYD S +EP+VL +  PN++VNG  
Sbjct: 115 DGDSPAAMRYTEAKMNNLGALMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTS 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EV     A+ +NPD+  + LME ++GPDFPTGA++ GR+GI+ A
Sbjct: 175 GIAVGMATNMAPHNLREVGAAIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREA 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG G + +R  + IE  +  + +I+VTEIPY VNKA + +KIA+LVR+KRI  I D+R
Sbjct: 235 YLTGHGRVRVRARTEIETDAKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIR 294

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES R   R+VIEL+R A  +V+LN L++YT LQ+ FS+  +AL    P+  TL  +L+ 
Sbjct: 295 DESSR-DIRIVIELRRDAVGEVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQV 353

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R +V+ R T++ L KA  R H++ GL IA  N+DEVV+IIR S   E A++ L  R
Sbjct: 354 YIDHRLDVITRATQFDLKKAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR 413

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L E+Q++AI+++RLA+L GL  + +  E N L
Sbjct: 414 --------------------------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNEL 447

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              + +  DIL  R R + I+ Q+L +V D+    RRT I E + D +DED I  E+ V+
Sbjct: 448 IATVADLKDILEKRERRVAIMLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVI 507

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T+S  GY++R+P+  ++AQ RGGKG  G  ++DED V  +F  STH+ +L F++ G VY 
Sbjct: 508 TLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYW 567

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+RLP G+   +G+ ++N ++L +GE++  I+P  +    +    +VFATK G + + 
Sbjct: 568 TKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPVRKFGGYF---CLVFATKKGIINKM 624

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVET------------CTQEND------------- 695
            L+ F +  ++G  A+ LD  DE++ V+                ++D             
Sbjct: 625 DLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQA 684

Query: 696 --------------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                     +++ TK GQ V FPIS  R   GR + GV+GI+L
Sbjct: 685 AEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITL 743

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+GD+VIS+  +   +             S         T   +    + +V   I    
Sbjct: 744 AEGDEVISLLWLKAGNKILTITEKGYGKRSEPGSYR--VTRRGSKGVRNLNVTDKIGAAV 801

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             E    +  ++  S+ G   R  + D R++ R+ +G++A  +   + +    A+  V D
Sbjct: 802 FVESVADDYDLIITSKDGQVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVED 861

Query: 850 NDQ 852
            +Q
Sbjct: 862 IEQ 864



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 80/213 (37%), Gaps = 13/213 (6%)

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                     ++  +  G       + +       RG   +  ++L +G+ + +++    
Sbjct: 701 FANRPIPKDLLMIATKNGQA---VTFPISCFRAMGRGTHGVKGITLAEGDEVISLL---- 753

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEND 695
                    ++  T+ G  +R++   +    R  K    L+  D+I   + VE+   + D
Sbjct: 754 --WLKAGNKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYD 811

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +++T+K GQ +R   + IR   GRN+ GV+ I+L  GD V     +   +    +     
Sbjct: 812 LIITSKDGQVIRIKAADIR-LTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQDSADAK 870

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +     + +   D   +        +    +EE
Sbjct: 871 ETFDKVKGVEVDDDSVVKDDAEKQEIGPTETEE 903


>gi|310642462|ref|YP_003947220.1| DNA topoisomerase iv, a subunit [Paenibacillus polymyxa SC2]
 gi|309247412|gb|ADO56979.1| DNA topoisomerase IV, A subunit [Paenibacillus polymyxa SC2]
          Length = 820

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/888 (34%), Positives = 473/888 (53%), Gaps = 90/888 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G    K Y 
Sbjct: 4   SEQFLPAYLEEMVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPEKAYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+VMG YHPHG+++IYD + RMAQ W +  +L++G GN+GS D DP AA RYTE
Sbjct: 64  KSAKTVGDVMGNYHPHGDSSIYDGMVRMAQPWKMSHVLVDGHGNWGSQDDDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  +L D+ K TV F+ N+D S +EPVVL +RYPN+LVNG  GI+ G AT IPT
Sbjct: 124 ARLSPIAMEMLRDIEKRTVLFKDNFDNSAKEPVVLPSRYPNLLVNGSSGISAGFATEIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           H+L EV+D  +AV++ P I+L+ +M  I+GPDFPTG +I+G  GIK+AY TG+G I IR 
Sbjct: 184 HSLREVIDATIAVMEKPQIELEEIMTFIKGPDFPTGGLIMGGEGIKDAYRTGKGRIYIRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G ++Q+V+TEIPYQV K+ ++  +  +  EK++  IA++RDES R G R+V+
Sbjct: 244 KTEIQSLRGGKQQLVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A+ IL  L + T LQ  ++ NMVA+    P +  L  IL+A++A + EVV  R
Sbjct: 304 ELKKEADAEGILAYLLKKTDLQVAYNFNMVAIVNKAPHQLGLKSILEAYIAHQREVVTNR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            K+ L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L               
Sbjct: 364 IKFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL--------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  +IL L+L RLT L    +  EL  +  +I +   IL 
Sbjct: 409 -----------QWMFGFSERQADSILTLQLYRLTNLEITTLEKELADIQKKITQYRSILD 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
           S  +L+ +I++ELL ++++    RR+ I   + ++    E  +  ED+++T+S  GYVKR
Sbjct: 458 SDRKLISLIRKELLEIREKYGIDRRSEIQGEVEEIKVNLEVMVAAEDVLLTLSKDGYVKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +    R G  RS   +++ D++T    V+T   +L F+  G  +   V ++P   
Sbjct: 518 TSMLSF---TRSGGERSNSGVKEGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYK 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G  ++N++SL + +RI +++P    E    +  +VF TK G V+R +L+++     
Sbjct: 575 WKEPGTPIVNVISLAKEDRIVSVIPIKNMEEIGKS--LVFVTKKGQVKRTELTEYATKRS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           S   A K+   DEILSV       DI+L T+ G  +RF    +    GR S GV+GI LA
Sbjct: 633 SAVAACKVAGDDEILSVTLSDNSKDIMLITRAGMSIRFKEQEVNAM-GRVSAGVKGIQLA 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD++++   V   + +                                           
Sbjct: 692 EGDEIVAALWVEEDEGE------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK----INEIGALVAVFP 846
                    +L ++E G+GKRT   D+    R GKGI   +  +     +    +VA F 
Sbjct: 709 ---------VLVLTESGYGKRTLLLDYPSQGRGGKGISTFEFKEGKRVRSNGTRIVAAFY 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  Q+ +++ +G  +     +  +  R   G ++    K + +V+V
Sbjct: 760 CREAVQLFVITSEGQTMSFLSEKAPLTDRKDTGKLLAPVEKKDEIVNV 807



 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 15/216 (6%)

Query: 693 ENDILLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           E+ +L  +K G   R  + +  R    R++ GV+     +GD +     V   D      
Sbjct: 503 EDVLLTLSKDGYVKRTSMLSFTRSGGERSNSGVK-----EGDYITQFLDVNTLDVLLVFT 557

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKND----SSVEGNISEERCQELKLKEQFILTVSEKG 807
                 +    ++     +E  +   +    +  +  +S    + ++   + ++ V++KG
Sbjct: 558 QRGQYFLLPVHQVPEYKWKEPGTPIVNVISLAKEDRIVSVIPIKNMEEIGKSLVFVTKKG 617

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KRT   ++  + R    + A  V+       +++V   +++  I+L++  G  IR   
Sbjct: 618 QVKRTELTEY-ATKR-SSAVAACKVA---GDDEILSVTLSDNSKDIMLITRAGMSIRFKE 672

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            E+    R + GV     A+ + +V+   + E E  
Sbjct: 673 QEVNAMGRVSAGVKGIQLAEGDEIVAALWVEEDEGE 708



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           ++ L+    +     +++   E    +   + +   E  +LT+S+ G+ KRTS   F  S
Sbjct: 467 RKELLEIREKYGIDRRSEIQGEVEEIKVNLEVMVAAEDVLLTLSKDGYVKRTSMLSFTRS 526

Query: 821 N--RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              RS  G++        E   +     VN  D +++ + +G    +PV+++        
Sbjct: 527 GGERSNSGVK--------EGDYITQFLDVNTLDVLLVFTQRGQYFLLPVHQVPEYKWKEP 578

Query: 879 G---VVIFSTAKDERVVSVERIRESEIV 903
           G   V + S AK++R+VSV  I+  E +
Sbjct: 579 GTPIVNVISLAKEDRIVSVIPIKNMEEI 606


>gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
 gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457]
          Length = 830

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/810 (41%), Positives = 488/810 (60%), Gaps = 42/810 (5%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP 
Sbjct: 61  VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R 
Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRS 180

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VI
Sbjct: 181 KAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVI 240

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RR
Sbjct: 241 ECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRR 300

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++
Sbjct: 301 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 360

Query: 433 LIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI
Sbjct: 361 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 420

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
              + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+SH
Sbjct: 421 AALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSH 480

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV+
Sbjct: 481 EGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVY 540

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L  
Sbjct: 541 QLPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQ 597

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------------ 712
           F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S             
Sbjct: 598 FANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPV 657

Query: 713 -------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                        +R   GR + GVRG+ LA GDQV+S+ IV   + D            
Sbjct: 658 LDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTENGYGKR 715

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                          + +    E N S     ++   ++F + ++  G   RT   +   
Sbjct: 716 TSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRVAEVSQ 774

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVND 849
             R+ +G+     S+     ++V +  +++
Sbjct: 775 VGRNTQGVTLIRTSEGE---SVVGLQRIDE 801



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 405 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 462

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 463 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 510

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 511 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 570

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 571 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 628

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 629 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 688

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 689 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 748

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 749 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 807

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 808 PEGEEALVENDAPVAQDDDGEQE 830


>gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 899

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 340/883 (38%), Positives = 508/883 (57%), Gaps = 84/883 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +  +MQ+ YL Y+++VI+ RA+PD RDG KPVHRR+++ M ++GV  NK  VK ARI G+
Sbjct: 11  VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 70

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD LARMAQD+SLR  L+ GQGNFGS+DGD PAA RYTE ++     
Sbjct: 71  VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGA 130

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L+DL K+TVD  PNYD S +EP+VL +  PN++VNG  GIAVGMATN+  HNL EV  
Sbjct: 131 LMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGA 190

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A+ +NPD+  + LME ++GPDFPTGA++ GR+GI+ AY TG G + +R  + IE  +
Sbjct: 191 AIHALAENPDLTGEDLMEYVKGPDFPTGAIVCGRSGIREAYLTGHGRVRVRARTEIETDA 250

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             + +I+VTEIPY VNKA + +KIA+LVR+KRI  I D+RDES R   R+VIEL+R A  
Sbjct: 251 KGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSR-DIRIVIELRRDAVG 309

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +V+LN L++YT LQ+ FS+  +AL    P+  TL  +L+ ++  R +V+ R T++ L KA
Sbjct: 310 EVVLNNLFKYTQLQTTFSIYNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 369

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             R H++ GL IA  N+DEVV+IIR S   E A++ L  R                    
Sbjct: 370 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDR-------------------- 409

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   L E+Q++AI+++RLA+L GL  + +  E N L   + +  DIL  R R + I
Sbjct: 410 ------FSLDEIQSQAIVDMRLAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAI 463

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           + Q+L +V D+    RRT I E + D +DED I  E+ V+T+S  GY++R+P+  ++AQ 
Sbjct: 464 MLQKLDAVVDKYGDERRTTIGEAIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQN 523

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG  G  ++DED V  +F  STH+ +L F++ G VY  KV+RLP G+   +G+ ++N
Sbjct: 524 RGGKGIIGAGLKDEDNVEQIFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVN 583

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            ++L +GE++  I+P  +    +    +VFATK G + +  L+ F +  ++G  A+ LD 
Sbjct: 584 FVALTEGEKVQAIVPVRKFGGYF---CLVFATKKGIINKMDLTLFSRPRKAGVNAISLDE 640

Query: 681 RDEILSVET------------CTQEND--------------------------------- 695
            DE++ V+                ++D                                 
Sbjct: 641 DDELVKVQLVGMSAEEYEASKNASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANR 700

Query: 696 ------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                 +++ TK GQ V FPIS  R   GR + GV+GI+LA+GD+VIS+  +   +    
Sbjct: 701 PIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITLAEGDEVISLLWLKAGNKILT 759

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                    S         T   +    + +V   I      E    +  ++  S+ G  
Sbjct: 760 ITEKGYGKRSEPGSYR--VTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDGQV 817

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            R  + D R++ R+ +G++A  +   + +    A+  V D +Q
Sbjct: 818 IRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQ 860



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 80/213 (37%), Gaps = 13/213 (6%)

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                     ++  +  G       + +       RG   +  ++L +G+ + +++    
Sbjct: 697 FANRPIPKDLLMIATKNGQA---VTFPISCFRAMGRGTHGVKGITLAEGDEVISLL---- 749

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEND 695
                    ++  T+ G  +R++   +    R  K    L+  D+I   + VE+   + D
Sbjct: 750 --WLKAGNKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYD 807

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +++T+K GQ +R   + IR   GRN+ GV+ I+L  GD V     +   +    +     
Sbjct: 808 LIITSKDGQVIRIKAADIR-LTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQDSADAK 866

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +     + +   D   +        +    +EE
Sbjct: 867 ETFDKVKGVEVDDDSVVKDDAEKQEIGPTETEE 899


>gi|239827050|ref|YP_002949674.1| DNA topoisomerase IV subunit A [Geobacillus sp. WCH70]
 gi|239807343|gb|ACS24408.1| DNA topoisomerase IV, A subunit [Geobacillus sp. WCH70]
          Length = 814

 Score =  704 bits (1816), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/897 (33%), Positives = 474/897 (52%), Gaps = 91/897 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  +++ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLDLALEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++YDA+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYDAMVRMSQDWKLRNVLIEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K TVDF PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSAIASELLRDIEKQTVDFVPNFDDTTKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GIK AY TG+G I+IRG 
Sbjct: 183 HLGEVIDAVIMRIDKPNCTVDELMTVLHGPDFPTGGIIQGKDGIKKAYETGKGKIIIRGK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI++TE+PY+VNKA +++KI EL  +K++  I+D+RDE+DR G R+VIE
Sbjct: 243 AVIEQAKGGKKQIIITELPYEVNKANLVKKIDELRFDKKLDGISDVRDETDRTGLRIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  ++ NMVA++   P+  +L  +L A++  R+EVV  R+
Sbjct: 303 LKKDADAEGILNYLYKNTDLQVPYNFNMVAIHKRHPKLLSLPELLDAYIEHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM +             
Sbjct: 363 QYELKKAHERQHIVEGLMKALSILDEVIATIRASRDKRDAKDNLMAK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      ++ E   L   I+E   IL+ 
Sbjct: 410 -------------YKFTEAQAEAIVSLQLYRLTNTDITALKQEAEQLEKTIQELTAILND 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL ++K +    RRT        + +  E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLAVIKKELRAMKKQYADERRTVIEDEIEEIKINLEVMIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A            M++ D +     ++T   +L F+  G      V+ LP    
Sbjct: 517 SYRSYSASNG-----QDFGMKESDRLLSQMEMNTTDVLLLFTRQGNYLYCPVYELPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ + N++ L++ + I   +P  + +   ++L ++F TK G V+R +L+ +      
Sbjct: 572 KDVGQHISNLIPLDRNDEIIAAVPVKQFD---DSLSLIFVTKRGMVKRTELAQYKVQRYT 628

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +AM +   DE++ V     +  +LL T  G  + F  + I     R + GV+GI+L 
Sbjct: 629 RPLVAMNVKEDDEVIHVYVTDGQQSLLLVTNQGYGLWFDEAEISTVGVRAA-GVKGINLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V+S                                                     
Sbjct: 688 EGDYVVSA---------------------------------------------------H 696

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
              K +  +++  +++G  K+    +F  ++R+ +G+      K N    +VA      +
Sbjct: 697 PIGKEEHMYLVIATQRGAVKKMPLSEFEKTSRAKRGVVMLRELKTNPH-RIVASVLTEGD 755

Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           D ++ + ++ G    V    +R A R + G  I  + +   ++ + +   + +  E 
Sbjct: 756 DDVLFIRTETGVTEMVSTASLRTADRYSNGSFIIDSDEAGAIMDIWKQPSNMLGKEE 812


>gi|171913702|ref|ZP_02929172.1| DNA gyrase, A subunit [Verrucomicrobium spinosum DSM 4136]
          Length = 891

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 319/853 (37%), Positives = 491/853 (57%), Gaps = 21/853 (2%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E  I  +++ +E++ S+L Y+++VI+ RA+PD+RDGLKP  RRIL+ M ++ +   KK+
Sbjct: 2   SEDNIKPINVEEELKGSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMHELSLYPPKKH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           +KCA+I G+  G YHPHG A IY  L  MAQ WS+R  L+  QGNFGSV+GDPPAA RYT
Sbjct: 62  MKCAKICGDTSGNYHPHGEAVIYPTLVNMAQPWSMRDPLVHPQGNFGSVEGDPPAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL      L+DD+ K+TVDF PNYD    EPVV  A +PN+LVNGG GIAVGMATN+P
Sbjct: 122 EARLTHLGGHLMDDMEKETVDFVPNYDERLTEPVVFPAAFPNLLVNGGTGIAVGMATNLP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+VDG  A IDNP+I L  LM+ +RGPDFPTG  +LG  GI++ + TG GS+ IR
Sbjct: 182 PHNLREIVDGICAQIDNPEITLQGLMQYVRGPDFPTGCTLLGTAGIRDYFETGHGSLRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + I +T     QI++T IPY VN+A + ++I EL  EK I ++  +RDESD    RVV
Sbjct: 242 GHAEISETGTKP-QIIITAIPYGVNRAELCKRIGELASEKIIPEVTAIRDESDE-NTRVV 299

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           ++L+R A   V+LN LY+ TSL++ FSV+M+A++  +P   +L   +  ++  R EV++R
Sbjct: 300 VDLRREARPQVVLNNLYKQTSLETTFSVHMLAIDNRRPRLLSLKDAISCYIEHRREVIIR 359

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKYLL +A   A  L  L +A++ LD+ +++IR + + + A   +   ++     + L 
Sbjct: 360 RTKYLLKQAEIDAEKLEALLLALSQLDDFIKMIRTASSRDEAESRIKAYTFTLEAAQSLG 419

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            LI          G    +++Q + IL+LRL +LT L R  ++ +  +L   I + +DIL
Sbjct: 420 ILIRSQPSI--RSGRYVFTDLQVKHILDLRLYQLTALERTKLQADYEALLNTITDLMDIL 477

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           +  SR+L IIK EL +++ +  T R T+I     ++  ED I  E  +VT++H G+VKR 
Sbjct: 478 AKESRVLTIIKDELGNIRAKYGTERLTKIEAAEGEINIEDLIANERNIVTITHRGFVKRT 537

Query: 552 PLSVYRAQRRGGKGRSGVVMRD-------EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             S +R Q RGGKG  G+  R+        DFV  LF  S H  ++FF++ G VY E+V+
Sbjct: 538 LASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLMFFTNTGRVYVERVY 597

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-----NLYVVFATKHGNVRR 659
           ++P  +   +G+++ N+L+L   E+I  ++    D          + +V+FATK G V++
Sbjct: 598 QVPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEGVWRSDRFVLFATKDGTVKK 657

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            +L+DF  I + G IA+KLD  ++++ V      ++I L T  G CV+   + IR   GR
Sbjct: 658 TELADFKNIRKDGIIAVKLDEGNDLIQVILTNGSSEICLVTSEGMCVKCEETDIRPM-GR 716

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV GI   + D V+S+  V             +   +         T          
Sbjct: 717 AAAGVMGIRPGETDHVVSLTAVDETAQLLVVSENGLGKRTPFEEYR--KTNRGAKGVTTM 774

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +V              ++  ++ ++  G   R    D R + R+ +G++  ++S+   I 
Sbjct: 775 NVTEKTGNVVAAMAVHEDDELMLMTSSGQSVRIRVADIRQTGRNAQGVKLMNLSEGETIQ 834

Query: 840 ALVAVFPVNDNDQ 852
            +     + D+++
Sbjct: 835 DV--AKVIPDDEE 845



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 73/175 (41%), Gaps = 7/175 (4%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +L+   D  + +     +    +   G+       +  + +E    E   ++L   E+
Sbjct: 464 EALLNTITDLMDILAKESRVLTIIKDELGNIRAKYGTERLTKIEAAEGEINIEDLIANER 523

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA----VFPVNDNDQII 854
            I+T++ +GF KRT + +FR   R GKG++  +  +             +F  + +D ++
Sbjct: 524 NIVTITHRGFVKRTLASEFRTQARGGKGLKGMETREAAGEDDAADFVEHLFAASAHDYLM 583

Query: 855 LVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEA 906
             ++ G +    V ++   +R  KG     + +   +E++ +V R+      DE 
Sbjct: 584 FFTNTGRVYVERVYQVPEMARTGKGRSIKNLLNLRAEEKIAAVLRLEADSDHDEG 638



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 103/270 (38%), Gaps = 15/270 (5%)

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
               DE     +  V+  +  G VK+  L+ ++  R+ G     +   ++  +  + + +
Sbjct: 632 DSDHDEGVWRSDRFVLFATKDGTVKKTELADFKNIRKDGIIAVKLDEGND--LIQVILTN 689

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
             + +   +S G   K +   +      A G           G R           +   
Sbjct: 690 GSSEICLVTSEGMCVKCEETDIRPMGRAAAGV---------MGIRPGETDHVVSLTAVDE 740

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVET-CTQENDILLTTK 701
              ++  +++G  +R    ++ + NR   G   M +  +   +       ++++++L T 
Sbjct: 741 TAQLLVVSENGLGKRTPFEEYRKTNRGAKGVTTMNVTEKTGNVVAAMAVHEDDELMLMTS 800

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            GQ VR  ++ IR   GRN+ GV+ ++L++G+ +  +A V+  D +  E         A 
Sbjct: 801 SGQSVRIRVADIRQ-TGRNAQGVKLMNLSEGETIQDVAKVIPDDEEKVEGEILGAEGRAS 859

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQ 791
               S  ++   S    +  +    ++  +
Sbjct: 860 AVEASEASDPSASSPETTVGDAAAGDDNAE 889


>gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
 gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805]
          Length = 810

 Score =  701 bits (1809), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/888 (33%), Positives = 473/888 (53%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +  LSE+Q  ++L++RL +LT L    +  E N L   IK+  DI
Sbjct: 414 ---------------SFGLSEIQANSVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I T                                    
Sbjct: 579 SSRASKGQNISELINLGDQEEILT------------------------------------ 602

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +K             T +  +LLTT  G+  RF  +  +    R   GV  I 
Sbjct: 603 -------IKNSKD--------LTDDAYLLLTTASGKIARFESTDFKAVKSR---GVIVIK 644

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V S  IV     D        K  +              +              
Sbjct: 645 LNDKDFVTSAEIVF---KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLF 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 702 VKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
           V    VN +D + ++S++G L  +   E            I                   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
 gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi
           DSM 16790]
          Length = 856

 Score =  701 bits (1808), Expect = 0.0,   Method: Composition-based stats.
 Identities = 326/845 (38%), Positives = 478/845 (56%), Gaps = 23/845 (2%)

Query: 1   MTEHII---SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M+         +      + +  I  EM+ SY+ YA++VI GRA+PD RDGLKPVHRRIL
Sbjct: 1   MSSDAPERFDPETGIAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M Q G+     + K + I GE MG YHPHG++AIY+ALARMAQD+S+R  L++GQGNF
Sbjct: 61  YAMHQSGISARSAHRKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGDPPAA RYTE R+   A  LLD++  DTV+F  NYD    EP VL A +PN+LVN
Sbjct: 121 GSVDGDPPAAMRYTEARMSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGM+TNIP HNLGEV+D  + +I +P+  ++ LM  ++GPDFPTGA I+G+  I
Sbjct: 181 GSSGIAVGMSTNIPPHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIVGQNAI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRG + +R      +     ++IV+TE+P+Q NKA ++E+IA+ V    I  I 
Sbjct: 241 YKAYKTGRGRVRVRA-----EFDVQDDRIVITELPFQTNKARLVERIADNVNAGTIEGIR 295

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           DLRDESDR G RVV+ELKRGA+ D++ NQL  +  L+S F V  +AL   +P+  TL   
Sbjct: 296 DLRDESDRDGIRVVVELKRGANPDIVKNQLLEH-HLESTFGVINLALVDGQPQVLTLKET 354

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++  R  VV RR++Y L++ RDRAH+L G   A+  +D+VV IIR S + + A+  L
Sbjct: 355 LHEYLEHRRTVVRRRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                         + + +S     S  T   SE Q   I+ ++L  LT L  D+I +E 
Sbjct: 415 RG------------EHVVESDERGESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEY 462

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            S+   I+    IL++   L  +++ EL +++D+    RRTRI+E    +  ED I +ED
Sbjct: 463 ESVQERIERLQTILNNPDELDAVVEDELATIRDKYADERRTRIIEDDGTVTHEDLIAQED 522

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +VV V+   Y+KR+ L  +R+Q RGGKG  G  ++D D V+ +++ +TH  +L+F+S G 
Sbjct: 523 VVVVVTEDDYIKRMSLEDFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQ 582

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGN 656
           VY+ K +++P  S  ARGK+ +N+L L+ GE+IT ++   E D       Y    T+ G 
Sbjct: 583 VYQLKTYQIPEMSRTARGKSAVNLLELDDGEQITAVVNTAEMDIDDDEERYFTMVTQSGY 642

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R  ++ F  I  +G IA+ L + D+++ VE      DI+L T+ G  +RF    +R  
Sbjct: 643 IKRTSVNSFQNIRSTGIIAISLGADDKLIDVEVTDGNRDIILGTRKGMAIRFNEGDVRSV 702

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR++ GV GI L   D V ++A V     D+   +    +                   
Sbjct: 703 -GRSARGVHGIKLEDTDAVAALAAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQSRNGKGL 761

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D             E       +  +S KG   RT   D     R+  G+   D+   +
Sbjct: 762 IDIKTNERNGHVCEVETVGISDELFMMSRKGQILRTPVDDISTVGRNTMGVIVMDLEDTD 821

Query: 837 EIGAL 841
            + ++
Sbjct: 822 TVASV 826



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 6/170 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           V          +     + A          +  + +  + +  +      ++L  +E  +
Sbjct: 465 VQERIERLQTILNNPDELDAVVEDELATIRDKYADERRTRIIEDDGTVTHEDLIAQEDVV 524

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + V+E  + KR S  DFR  +R GKGI  T +        + +V+  N +D ++  +  G
Sbjct: 525 VVVTEDDYIKRMSLEDFRSQHRGGKGIIGTSLKDG---DTVSSVYVANTHDYLLYFTSHG 581

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVDEAE 907
            + ++   +I   SR  +G   V +      E++ +V    E +I D+ E
Sbjct: 582 QVYQLKTYQIPEMSRTARGKSAVNLLELDDGEQITAVVNTAEMDIDDDEE 631



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 92/242 (38%), Gaps = 14/242 (5%)

Query: 530 EDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            D    E+   T+ +  GY+KR  ++ ++  R  G     + +  +D + D+ +   +  
Sbjct: 624 MDIDDDEERYFTMVTQSGYIKRTSVNSFQNIRSTG--IIAISLGADDKLIDVEVTDGNRD 681

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G   +     +      ARG   I           T  +          + +V
Sbjct: 682 IILGTRKGMAIRFNEGDVRSVGRSARGVHGIK-------LEDTDAVAALAAVDDDQDDWV 734

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQC 705
           +  T+HG  +R  +  + Q +R+GK  + + + +    V         +++ + ++ GQ 
Sbjct: 735 LTVTEHGYGKRTDIDRYRQQSRNGKGLIDIKTNERNGHVCEVETVGISDELFMMSRKGQI 794

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R P+  I    GRN++GV  + L   D V S+      D   +      +  S      
Sbjct: 795 LRTPVDDISTV-GRNTMGVIVMDLEDTDTVASVDTHPRTDDSSEADSGDGESESENATAT 853

Query: 766 SG 767
           + 
Sbjct: 854 TP 855


>gi|328553287|gb|AEB23779.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens TA208]
 gi|328911926|gb|AEB63522.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens LL3]
          Length = 807

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/896 (34%), Positives = 477/896 (53%), Gaps = 96/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K +
Sbjct: 3   QPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSSIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  I++PD  +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IR
Sbjct: 183 PHHLGEVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVV
Sbjct: 243 GKAEVEAVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A  ILN LY+ T LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  
Sbjct: 303 VELKKEADAKGILNFLYKNTDLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ + L KA++R H++ GL  A++ LDEV+ +IR S + + A++ L+ +           
Sbjct: 363 RSVFELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   L  +I+E   IL
Sbjct: 412 ---------------FSFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           S   +LL +I   L  +K      RR+        + +  E  +  ED+ VTV+  GYVK
Sbjct: 457 SHDKKLLKVITSSLKKLKKTYADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSFAASNG-----QDFGMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI ++++ E I   +P  E        Y++F TK+G V+R +++ +    
Sbjct: 572 RWKDMGQHVTNITTIDRDETIVKAIPVKEFN---PASYLLFMTKNGMVKRTEMTHYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V        + + T LG  + F    + V   R + GV+GI+
Sbjct: 629 YSKALVALNLKGDDELVDVHVTDGGCQLFIATHLGYGLWFGEDEVNVVGARAA-GVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+S  I+   D+                                          
Sbjct: 688 LKDGDTVVSGQILHETDS------------------------------------------ 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++ V+++G  KR +  +F  ++R+ +G+      K N    +V VF   
Sbjct: 706 -----------LVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLRELKKNPH-RVVGVFACA 753

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902
             D I   ++KG  I   V  +R   R + G   F T +DE   V  V RI  S++
Sbjct: 754 LADTIAAETEKGERIETTVKSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 101/272 (37%), Gaps = 18/272 (6%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G V+R     F   N        +   D ++        + +LL T  G  +  
Sbjct: 507 VTVTKDGYVKRTSQRSFAASNGQDF---GMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYC 563

Query: 709 PISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           P+  +     ++ +G  V  I+    D+ I  AI +         +   K+   +R  ++
Sbjct: 564 PVHQLPDIRWKD-MGQHVTNITTIDRDETIVKAIPVKEFNPASYLLFMTKNGMVKRTEMT 622

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +  S    +       E     +      +   +  G+G      +  +      G
Sbjct: 623 HYKAQRYSKALVALNLKGDDELVDVHVTDGGCQLFIATHLGYGLWFGEDEVNVVGARAAG 682

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-T 885
           ++  ++        +V+   +++ D ++LV+ +G + R+ ++E    SRA +GV++    
Sbjct: 683 VKGINLKDG---DTVVSGQILHETDSLVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLREL 739

Query: 886 AKD-ERVVSV-------ERIRESEIVDEAEST 909
            K+  RVV V           E+E  +  E+T
Sbjct: 740 KKNPHRVVGVFACALADTIAAETEKGERIETT 771


>gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a]
          Length = 810

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/888 (34%), Positives = 474/888 (53%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+ +L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I T                                    
Sbjct: 579 SSRASKGQNISELINLGDQEEILT------------------------------------ 602

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +K             T +  +LLTT  G+  RF  +  +    R   GV  I 
Sbjct: 603 -------IKNSKD--------LTDDAYLLLTTASGKIARFESTDFKAVKSR---GVIVIK 644

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V S  IV     D        K  +              +              
Sbjct: 645 LNDKDFVTSAEIVF---KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLF 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 702 VKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
           V    VN +D + ++S++G L  +   E            I                   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
 gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a]
 gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a]
 gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a]
          Length = 810

 Score =  700 bits (1807), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/888 (34%), Positives = 473/888 (53%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I T                                    
Sbjct: 579 SSRASKGQNISELINLGDQEEILT------------------------------------ 602

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +K             T +  +LLTT  G+  RF  +  +    R   GV  I 
Sbjct: 603 -------IKNSKD--------LTDDAYLLLTTASGKIARFESTDFKAVKSR---GVIVIK 644

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V S  IV     D        K  +              +              
Sbjct: 645 LNDKDFVTSAEIVF---KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLF 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 702 VKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
           V    VN +D + ++S++G L  +   E            I                   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40]
          Length = 810

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/888 (33%), Positives = 473/888 (53%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DE+++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I T                                    
Sbjct: 579 SSRASKGQNISELINLGDQEEILT------------------------------------ 602

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +K             T +  +LLTT  G+  RF  +  +    R   GV  I 
Sbjct: 603 -------IKNSKD--------LTDDAYLLLTTASGKIARFESTDFKAVKSR---GVIVIK 644

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V S  IV     D        K  +              +              
Sbjct: 645 LNDKDFVTSAEIVF---KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLF 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 702 VKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
           V    VN +D + ++S++G L  +   E            I                   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 814

 Score =  700 bits (1806), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/849 (37%), Positives = 481/849 (56%), Gaps = 40/849 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++     I    + +E++ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  
Sbjct: 2   EEQTLFGKIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRH 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y K AR+ GE MGKYHPHG++AIYD + R+AQ++S+R  L++GQGNFGS+DGD  AA
Sbjct: 62  NQSYKKSARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RLQ+    +L D+ +DTV++ PN+D S +EP+VL ++ PN+LVNG  GIAVGMA
Sbjct: 122 MRYTEARLQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           TN+P HNLGEVVD    +I+  D  D   LM  + GPDFPTG VILG+ GI +AY TGRG
Sbjct: 182 TNMPPHNLGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVILGKDGIIDAYRTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            +V++G+ H+E+    +  +V+TEIPY VNK  M+E IA  V+ K I  + D+RDESDR+
Sbjct: 242 RLVVQGLVHVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRK 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+E+ R    D+++ QLYR + LQ+ F V  +AL   +P   +L  +L  F+  R 
Sbjct: 302 GLRVVLEVSRDVDPDLVIRQLYRRSQLQNTFGVINLALVDGRPVELSLTDMLNVFLGHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RRT++ L KA  RAH+L GL  A+  +D V+ +IR S N   A+  L+        
Sbjct: 362 TVVRRRTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAE------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               +  SE+Q +AIL+++L RLTGL RD + +E   L  +I+ 
Sbjct: 416 --------------------LDFSEIQAQAILDMKLQRLTGLERDKLNDEFAGLLADIQR 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHL 545
              IL S   L G+I +EL+++K +    RRT+IV+ +     DED I RED+VV +S  
Sbjct: 456 YRSILDSEKVLDGVIVEELVALKGKYGDDRRTKIVDRVGQDCSDEDLIPREDIVVMLSRD 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY++RVPL  Y  Q +GGKGR G  +R+ED V+ + + +TH  +  F++ G V+  K + 
Sbjct: 516 GYLRRVPLEDYSLQAKGGKGRRGARLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYI 575

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +       +GK +   +SL   ER+ ++           + ++ F T+ G  +R   S+ 
Sbjct: 576 ISES-RTGKGKLIGKYISLENDERVVSMKT----RRGQESGFLFFLTRRGIAKRLPSSEL 630

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + R+G+  + LD  DEI  +   +  +D+LL + +GQ +R      R   GR++ GV+
Sbjct: 631 DNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRVSEDEFRPM-GRSARGVK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L  GD++IS  +V             +   +                    +    +
Sbjct: 690 AMRLKDGDRIISGEVVTEDRRPILVSETGIGKRTNFEDFTVHHRGGGGMKVMSINSRTGL 749

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                   +  E  I+ ++ KG   R ++ + R+  R+  G     +   +   ++V + 
Sbjct: 750 LAAATSVSEDDE--IIVMTAKGRMIRVAAKEIRVLGRTAAGSIVVRL---DGGDSVVDLS 804

Query: 846 PVN-DNDQI 853
            VN D + +
Sbjct: 805 VVNMDGEDL 813


>gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A
 gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31]
 gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a]
 gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7]
 gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b]
 gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26]
 gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1]
          Length = 810

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/888 (34%), Positives = 473/888 (53%), Gaps = 87/888 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + AR  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I T                                    
Sbjct: 579 SSRASKGQNISELINLGDQEEILT------------------------------------ 602

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +K             T +  +LLTT  G+  RF  +  +    R   GV  I 
Sbjct: 603 -------IKNSKD--------LTDDAYLLLTTASGKIARFESTDFKAVKSR---GVIVIK 644

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V S  IV     D        K  +              +              
Sbjct: 645 LNDKDFVTSAEIVF---KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLF 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+
Sbjct: 702 VKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVS 760

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++D+I+LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 761 EDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 807



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 11/222 (4%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +L  +  G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S 
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSK 668

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG+       ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 669 KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 710



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 57/174 (32%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNE------------IRIA---------------- 873
           V    VN +D + ++S++G L  +   E            I                   
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSK 607

Query: 874 --------------SRATK------------GVVIFSTAKDERVVSVERIRESE 901
                          +  +            GV++      + V S E + + E
Sbjct: 608 DLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDE 661


>gi|308173788|ref|YP_003920493.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
 gi|307606652|emb|CBI43023.1| subunit A of DNA topoisomerase IV [Bacillus amyloliquefaciens DSM
           7]
          Length = 807

 Score =  699 bits (1804), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/896 (33%), Positives = 476/896 (53%), Gaps = 96/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K +
Sbjct: 3   QPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSSIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  I++PD  +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IR
Sbjct: 183 PHHLGEVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVV
Sbjct: 243 GKAEVEAVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A  ILN LY+ T LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  
Sbjct: 303 VELKKEADAKGILNFLYKNTDLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ + L KA++R H++ GL  A++ LDEV+ +IR S + + A++ L+ +           
Sbjct: 363 RSVFELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNLISK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   L  +I+E   IL
Sbjct: 412 ---------------FSFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           S   +LL +I   L  +K      RR+        + +  E  +  ED+ VTV+  GYVK
Sbjct: 457 SHDKKLLKVITSSLKKLKKTYADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSFAASNG-----QDFGMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI ++++ E I   +   E        Y++F TK+G V+R +++ +    
Sbjct: 572 RWKDMGQHVTNITTIDRDETIVKAISVKEFN---PASYLLFMTKNGMVKRTEMTHYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V        + + T LG  + F    + V   R + GV+GI+
Sbjct: 629 YSKALVALNLKGDDELVDVHVTDGGCQLFIATHLGYGLWFGEDEVNVVGARAA-GVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V+S  I+   D+                                          
Sbjct: 688 LKDGDTVVSGQILHETDS------------------------------------------ 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++ V+++G  KR +  +F  ++R+ +G+      K N    +V VF   
Sbjct: 706 -----------LVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLRELKKNPH-RVVGVFACA 753

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902
             D I   ++KG  I   V  +R   R + G   F T +DE   V  V RI  S++
Sbjct: 754 LADTIAAETEKGERIETTVKSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 101/272 (37%), Gaps = 18/272 (6%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G V+R     F   N        +   D ++        + +LL T  G  +  
Sbjct: 507 VTVTKDGYVKRTSQRSFAASNGQDF---GMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYC 563

Query: 709 PISAIRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           P+  +     ++ +G  V  I+    D+ I  AI +         +   K+   +R  ++
Sbjct: 564 PVHQLPDIRWKD-MGQHVTNITTIDRDETIVKAISVKEFNPASYLLFMTKNGMVKRTEMT 622

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
               +  S    +       E     +      +   +  G+G      +  +      G
Sbjct: 623 HYKAQRYSKALVALNLKGDDELVDVHVTDGGCQLFIATHLGYGLWFGEDEVNVVGARAAG 682

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-T 885
           ++  ++        +V+   +++ D ++LV+ +G + R+ ++E    SRA +GV++    
Sbjct: 683 VKGINLKDG---DTVVSGQILHETDSLVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLREL 739

Query: 886 AKD-ERVVSV-------ERIRESEIVDEAEST 909
            K+  RVV V           E+E  +  E+T
Sbjct: 740 KKNPHRVVGVFACALADTIAAETEKGERIETT 771


>gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299]
 gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299]
          Length = 963

 Score =  699 bits (1803), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/911 (35%), Positives = 491/911 (53%), Gaps = 69/911 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I  + +  E   SYL+YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++  K +
Sbjct: 105 EDERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 164

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+S+   L++G GNFGS+D DPPAA RYT
Sbjct: 165 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYT 224

Query: 132 ECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           ECRL+ AA  + L D+G D VDF   +DGS  EP VL AR PN+L+NG  GIAVGMAT+I
Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284

Query: 191 PTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSI 248
           P HNL EV +  V    +P+   L+ L+E++  PDFPTG +I+ +  G K  Y TG+G +
Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344

Query: 249 VIRGVSHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +RG + +EK SG       R+ +V+T IPYQ NKA++ E+IA+LV  + I  ++D+RDE
Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G RVV+E++RGA A+ +L+QLY  T LQ+  SVN+V L G +P+  +L+ I++ F+
Sbjct: 405 SDRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGLVGREPKVLSLMEIMREFL 464

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           AFR + V RR ++ L KA  R HV+ G     A  D VV  IR + +  TA+  L ++  
Sbjct: 465 AFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKP- 523

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                    +LSE Q  A+L + L RLTGL  D ++ E   L  
Sbjct: 524 ------------------------FWLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTA 559

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI----VEGLLDMEDEDCIVREDM 538
            +++   +L  RSR++  + +E   ++D     RRT I          M     ++    
Sbjct: 560 RVEDLTGLLGDRSRVIATVAREAKELRDTFGVDRRTDIDTDAQIHAKKMNVTLDMLNSPS 619

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +V +++ GY+KR+  +V+  Q R  +GR+   MR  D VT +   +   +VLFF+  G V
Sbjct: 620 LVIMTNRGYIKRIDPAVFSKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRV 679

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP--EDESSWNNLYVVFATKHGN 656
           +  + + +P  S  A G     +L L +GE IT ++P    E+        + F T  G 
Sbjct: 680 HAVRAFNIPQASTSALGTPFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGL 739

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++R   S+F+ I  +GK A+ L   D +  V+   + + I++    G  + F   ++R  
Sbjct: 740 IKRTCASEFVGIRNNGKKALVLRKGDRLKHVDIVKKGDGIIIGGIDGSVIHFDADSVRA- 798

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV+ ++                                       DT E     
Sbjct: 799 QGRAAAGVKAMAFKPD--------------------------GLDDTSEDDDTSEALPAN 832

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             +    + SEE  ++   K   +  VS  G GKR S   F   +R+G+G +   + K +
Sbjct: 833 ASAGDVEDDSEEDGEDEDAKGPMLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGS 892

Query: 837 EIGALVAV-FPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSV 894
           ++ AL       ++++ +I+ S  G + R  V  IR    RA KGV +   +  + V  +
Sbjct: 893 KLAALCLTGLDSDEHEHVIIGSQGGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDI 952

Query: 895 ERIRESEIVDE 905
             +      DE
Sbjct: 953 TLLPAELGDDE 963


>gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum]
 gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  698 bits (1802), Expect = 0.0,   Method: Composition-based stats.
 Identities = 341/834 (40%), Positives = 492/834 (58%), Gaps = 36/834 (4%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV     Y K ARI 
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL+  
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ +L ++TV+F PNYD S QEP VL AR P +L+NG  GIAVGMATNIP HN+ E+
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A  TGRGSIV+RGV+ IE+
Sbjct: 190 IDGLLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVAEIEE 249

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  DR  I++ EIPYQVNKA ++E+IAELVRE  +  IAD+RDESDR G RVVI+LKR 
Sbjct: 250 STRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+  V+LN+LY  T LQ+ F  N VAL   +P   +L   L  F++FR++VV RRT + L
Sbjct: 310 ANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALVHFLSFRQDVVTRRTLFRL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KAR+R H+L GL  A+  +D+++ +IR S +P+ AR  L+++                 
Sbjct: 370 RKARERFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q RAIL++RL RLT L RD I  E   + + I+   DIL SRSRL
Sbjct: 413 ---------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRLLIRGLEDILGSRSRL 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++E  ++++     RRTRIV    ++  E  I  +   +T+++ GY+KRV    Y 
Sbjct: 464 MAVIREEFTALRENYGDARRTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYP 523

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKGRSGV ++++D V      + H ++LFF+ +G VY+ K   +P     ARGK 
Sbjct: 524 TQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKP 583

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +   L L   E++T ++     E    +  +VF T +G ++R  LS +  I +SG IA+ 
Sbjct: 584 VRGFLPLAPEEKVTRMLNVASFE---GDRSLVFVTVNGIIKRTALSAYSSIRQSGIIALT 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D +  V     ++ +L+ T+ G  + FPI  +    GR + GVR I L + D+V  
Sbjct: 641 LREGDRLAQVLVADADSHVLVATRRGMAILFPIHEV-TEQGRTASGVRAIRLREDDRVAD 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             IV   D                 +        +    +  + +        +     +
Sbjct: 700 AEIVTETDPVAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAEKIGAVVSLVKAGDTDD 759

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
             I  ++ KG   R  + + R   RS +G+    ++       +V+       D
Sbjct: 760 LTI--ITSKGVTNRVQANELRTMGRSAQGVIVMRLAD---DDTIVSAVVSPPRD 808



 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/329 (20%), Positives = 121/329 (36%), Gaps = 62/329 (18%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
              +    N+   +  T  G ++R     +    R   G+  + L   D ++   T T  
Sbjct: 493 ISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAVIITLTPTAH 552

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG--VRGI------------------------ 727
             IL  T +G+  R     I     R + G  VRG                         
Sbjct: 553 ETILFFTDIGKVYRVKAHEIPEVQ-RTARGKPVRGFLPLAPEEKVTRMLNVASFEGDRSL 611

Query: 728 ----------------------------SLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                                       +L +GD++   A VL ADAD    +   + M+
Sbjct: 612 VFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRL---AQVLVADADSHVLVATRRGMA 668

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +     +  T+    +            E+  +   +  V+EKG+GKR     FR 
Sbjct: 669 ILFPIHEVTEQGRTASGVRAIRLREDDRVADAEIVTETDPVAVVTEKGYGKRLDVAKFRH 728

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R G G++ +  ++  +IGA+V++    D D + +++ KG   RV  NE+R   R+ +G
Sbjct: 729 QHRGGMGLKISRGAE--KIGAVVSLVKAGDTDDLTIITSKGVTNRVQANELRTMGRSAQG 786

Query: 880 VVIFSTAKDERVVSVERIRESEIVDEAES 908
           V++   A D+ +VS       ++  E ES
Sbjct: 787 VIVMRLADDDTIVSAVVSPPRDVEGEQES 815


>gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
 gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414]
          Length = 836

 Score =  698 bits (1801), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/914 (34%), Positives = 484/914 (52%), Gaps = 116/914 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + + ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   PTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   ++  +L ++  +TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLAPISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+ID PD+    L EII GPDFPTG  I+G +GI+ AY +G+GSIV+
Sbjct: 189 PPHNLGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIVGDSGIREAYTSGKGSIVL 248

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV+  E+      S  R  I++TE+PYQVNKA  +EK+A+LV   R+  I+DLRDESDR
Sbjct: 249 RGVAKTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G RVVIELKR  +   +L  LY  T+LQS F   ++AL   +P + +L  +L+ F+ FR
Sbjct: 309 EGMRVVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQPRQLSLRQMLQEFLKFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+ + RR  Y L KA  R H++ GL  A++ LD+++ I+R + +  TA+  L  R     
Sbjct: 369 EQTLNRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR----- 423

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                + LSE Q  AIL + L RLT L + +++ E   L  +I 
Sbjct: 424 ---------------------LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIG 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--------------------L 525
               +LS R  LL  +K++L S+K + + PRRT+++                        
Sbjct: 463 SLQILLSDRKELLKTLKKDLRSLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAID 522

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                D    E++++  SH GYV+R+          G K ++   + D DF+    + +T
Sbjct: 523 SPNSPDAEPPEEVILDFSHRGYVRRLQP-------SGKKSKAENGLPDHDFIIQSDLTAT 575

Query: 586 HTSVLFFSSLGFVYKEKVWRL-PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
              +L  +S G VY   V  + P      RG  LI +LS         ++       +  
Sbjct: 576 DKELLVITSSGKVYPVNVGDIRPTTGRSPRGTPLITMLSSTAQGAQEAVVSRLILPENLE 635

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              +V  TK G ++R  L +   + R G   +KL   DE+L  +  T + +++L +  G+
Sbjct: 636 TRQMVLLTKEGRIKRLTLGELTNLTRRGITILKLKEDDELLFTQLTTPKENLILASSGGR 695

Query: 705 CVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            ++F     +    GR ++G++ + L K  Q++                           
Sbjct: 696 LLKFAADDQQLPVMGRTAMGLQALRLLKHQQMVGCV------------------------ 731

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                            E  +L V+E+G+ KR    + + ++R 
Sbjct: 732 -----------------------------TAAGEDNLLLVTEEGYAKRLPVSNLKRADRG 762

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             G ++      ++   L A+     + ++ LV++K  ++R+PV+ + I +R  KG  I 
Sbjct: 763 NIGTQSLKF--ASKTDNLAAMVQAIASAEVALVTNKDRVVRIPVDTVPILARDGKGESIL 820

Query: 884 STAKDERVVSVERI 897
              +DER++SV  +
Sbjct: 821 DLNRDERIISVMEV 834



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D    +R       +      S +  ++  ++        I      + +  E+ IL  S
Sbjct: 481 DLRSLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNSPDAEPPEEVILDFS 540

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            +G+ +R              G ++   + + +   ++       + ++++++  G +  
Sbjct: 541 HRGYVRRLQPS----------GKKSKAENGLPDHDFIIQSDLTATDKELLVITSSGKVYP 590

Query: 865 VPVNEIR-IASRATKGVVIF----STAKD--ERVVSVERIRES 900
           V V +IR    R+ +G  +     STA+   E VVS   + E+
Sbjct: 591 VNVGDIRPTTGRSPRGTPLITMLSSTAQGAQEAVVSRLILPEN 633


>gi|261406138|ref|YP_003242379.1| DNA topoisomerase IV subunit A [Paenibacillus sp. Y412MC10]
 gi|261282601|gb|ACX64572.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. Y412MC10]
          Length = 819

 Score =  698 bits (1800), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/900 (33%), Positives = 484/900 (53%), Gaps = 90/900 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y 
Sbjct: 4   SEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE
Sbjct: 64  KSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D C+AV+  P+I+LD +M  I+GPDFPTG +I+G  GI +AY TG+G + +R 
Sbjct: 184 HNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+
Sbjct: 244 KTVIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A+ IL  L++ T LQ  ++ NMVA+    P++  L  +L A++  + EVV  R
Sbjct: 304 ELKKDADANGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVTHR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L               
Sbjct: 364 TQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL--------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  +IL L+L RLT L    ++ EL+ L  +I+    IL 
Sbjct: 409 -----------QWMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILD 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
           S  +L+G+I++EL+ ++++    RR+ I E + ++    E  +  ED++VT+S+ GY+KR
Sbjct: 458 SDKKLIGVIRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +    R G       +++ D++T LF V+T  ++L F+S G  +   V ++P   
Sbjct: 518 TSMLSF---TRSGGELESSGVKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYK 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G A++N++ + + + I +++P    + +  +  +VF ++ G V+R  L +++    
Sbjct: 575 WKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGKS--LVFVSRKGQVKRTDLKEYVTKRS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               A K+ + D I+ V       DI+L +K G  +RF    +    GR S GVRGI L 
Sbjct: 633 GAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V++   V + + +                                           
Sbjct: 692 DGDEVVAALWVENDEGE------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE----IGALVAVFP 846
                    ILT+++ G+GKR+   D+   +R GKG+   +  +         A+V  F 
Sbjct: 709 ---------ILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFY 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             +  QI   S+ G    +   ++ I  R + G ++    K+ ++V +  +  +E+  E 
Sbjct: 760 CREPLQINAYSEDGQAFPIHTEKVPIMERKSIGKLLADVGKNGQIVDLVSLPHAELGKEG 819


>gi|154686224|ref|YP_001421385.1| DNA topoisomerase IV subunit A [Bacillus amyloliquefaciens FZB42]
 gi|154352075|gb|ABS74154.1| ParC [Bacillus amyloliquefaciens FZB42]
          Length = 807

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/896 (33%), Positives = 482/896 (53%), Gaps = 96/896 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K +
Sbjct: 3   QPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHADGNTFDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSSIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  I++PD  +D LM++I+GPDFPTG +I G  GI+ AY TG+G I+IR
Sbjct: 183 PHHLGEVIDAVIKRIESPDCTVDDLMQVIKGPDFPTGGIIQGVDGIRKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RVV
Sbjct: 243 GKAEVESVRGGREQIVITEIPFEVNKANLVKKMDEYRIDKKVEGISEVRDETDRTGLRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A  ILN LY+ T LQ+ ++ NMVA++  +P   +L  IL A+++ ++EVV  
Sbjct: 303 VELKKEADAKGILNFLYKNTDLQTTYNFNMVAIHNRRPMLMSLTAILDAYISHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ + L KA++R H++ GL  A++ LDEV+ +IR S + + A++ +M +           
Sbjct: 363 RSVFELQKAKERHHIVEGLMKALSVLDEVIAVIRASSDKKDAKQNVMSK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   L  +I+E   IL
Sbjct: 412 ---------------FTFTEPQAEAIVSLQLYRLTNTDITALKEEAEELSKKIQELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           S   +LL +I   L  +K      RR+        + +  E  +  ED+ VTV+  GYVK
Sbjct: 457 SHDKKLLKVITSSLKKLKKTYADSRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSFAASNG-----QDFGMKDTDRLIHQFEMNTTDVLLLFTNKGSYVYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+++++ E I   +P  E +    + Y++F TK+G V+R +++ +    
Sbjct: 572 RWKDMGQHVTNIITIDRDETIVKAIPVKEFD---PSSYLLFMTKNGMVKRTEMTHYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V      + + + T+LG  + F    + V   R + GV+GI+
Sbjct: 629 YSKALVALNLKGDDELIDVHVTDGGSQLFIATRLGYGLWFGEDEVNVVGARAA-GVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +  GD V+S  I+   D+                                          
Sbjct: 688 VKDGDTVVSGQILHETDS------------------------------------------ 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      ++ V+++G  KR +  +F  ++R+ +G+      K N     V VF   
Sbjct: 706 -----------LVLVTQRGAIKRMNLSEFEKTSRAKRGVIMLRELKKNPH-RAVGVFACA 753

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER--VVSVERIRESEI 902
             D I   ++KG  I + V  +R   R + G   F T +DE   V  V RI  S++
Sbjct: 754 LADMIAAETEKGERIEIAVKSLRANDRYSNGS--FFTDEDETGPVTDVWRIPASDV 807


>gi|321311454|ref|YP_004203741.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
 gi|320017728|gb|ADV92714.1| DNA topoisomerase IV subunit A [Bacillus subtilis BSn5]
          Length = 806

 Score =  697 bits (1799), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/890 (33%), Positives = 475/890 (53%), Gaps = 92/890 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K 
Sbjct: 2   SQPELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKN 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  I  P   +D LME+I+GPDFPTG +I G  GI+ AY TG+G I+I
Sbjct: 182 PPHHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGGIIQGIDGIRKAYETGKGKIII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G REQIV+TEIP++VNKA +++K+ E   +K++  I+++RDE+DR G RV
Sbjct: 242 RGKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A A  ILN LY+ T LQ  ++ NMVA++  +P   +L  IL A++  ++EVV 
Sbjct: 302 VIELKKEADAKGILNFLYKNTDLQITYNFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 NRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   LG +I+E   I
Sbjct: 412 ----------------YEFTEPQAEAIVSLQLYRLTNTDITALKEEAEELGKKIEELESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           LS+  +LL +I   L ++K +    RR+        + +  E  +  ED+ VTV+  GY+
Sbjct: 456 LSNDKKLLKVITNSLKALKKKYADTRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +   F ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNG-----QDFGMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+   N++++++ E I   +P  E +    + Y++F TK+G V++ +L+ +   
Sbjct: 571 IRWKDMGQHFSNLITIDRDETIVKAIPIKEFD---PSAYLLFFTKNGMVKKTELTHYKAQ 627

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ L   DE++ V     E+ I + T LG  + F    + V   R + GV+GI
Sbjct: 628 RYSKALVALNLKGEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D V+S  I+  +D+                                         
Sbjct: 687 NLKEDDFVVSGEILQQSDS----------------------------------------- 705

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       I+  +++G  KR S  +F  ++R+ +G+      K N    +VA+F  
Sbjct: 706 ------------IVLFTQRGAVKRMSLSEFEKTSRAKRGVVMLRELKKNPH-RVVALFAC 752

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
               +++  ++KG    +   E+R   R + G   F   +  +V +V R+
Sbjct: 753 GLEQRLMAETEKGDRKELQAKELRTNDRYSNGSFFFDEEESGKVTAVWRL 802



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 78/255 (30%), Gaps = 55/255 (21%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  TK G ++R     F   N        +   D +L        + +LL T  G  +  
Sbjct: 507 VTVTKDGYLKRTSQRSFAASNGQDF---GMKDTDRMLHQFEMNTTDVLLLFTNKGSYIYC 563

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P+  +                                                  +   D
Sbjct: 564 PVHQLP------------------------------------------------DIRWKD 575

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             +  S       +  I +    +      ++L  ++ G  K+T    ++   R  K + 
Sbjct: 576 MGQHFSNLITIDRDETIVKAIPIKEFDPSAYLLFFTKNGMVKKTELTHYKAQ-RYSKALV 634

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++        L+ V   N   QI + +  G  +    +E+ +      GV   +  +D
Sbjct: 635 ALNLK---GEDELIDVHVTNGESQIFMATHLGYGLWFGEDEVNVVGARAAGVKGINLKED 691

Query: 889 ERVVSVERIRESEIV 903
           + VVS E +++S+ +
Sbjct: 692 DFVVSGEILQQSDSI 706


>gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
 gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304]
          Length = 786

 Score =  697 bits (1798), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/812 (36%), Positives = 452/812 (55%), Gaps = 46/812 (5%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I++E+++SY+ YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  N+ Y K ARI G
Sbjct: 6   DISEELKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG++A+YDAL RMAQD+ +R  L++GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 66  EVLGKYHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+GK+TVDF PN+D + +EPVVL ++ PN+L+NG  GIAVGMATN+P HNL EV 
Sbjct: 126 EEMLADIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVC 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +G +A I NP+I ++ LM+ ++GPDFPTG VI+G  GIK AY TGRG I +RG   +EK 
Sbjct: 186 EGIIAYIQNPEISVEELMKYVKGPDFPTGGVIVGVDGIKEAYLTGRGKITVRGKVEVEK- 244

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 I++ E+PY VNKA ++E IAEL +++    I  +RDESDR+G RVVIELK G++
Sbjct: 245 ----NAIIIREVPYMVNKAKLVESIAELAKDRIDE-IRTIRDESDREGIRVVIELKSGSN 299

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            + ++ +LY Y++LQ+ F +  +AL   +P    L  ++  FV  R E++ RRT Y L K
Sbjct: 300 PETVIKKLYAYSNLQTTFGIINLALVDNEPRILNLKELIALFVDHRREIIRRRTTYDLEK 359

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A++R H++ GL + V ++D  + +I+ S +P  A+ +L++                    
Sbjct: 360 AQERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIE-------------------- 399

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                 T  LSE Q  A+L++RL +LT +  D +  E  SL  +I E   IL+S  ++  
Sbjct: 400 ------TYSLSEKQADAVLQMRLQKLTAMEIDALLKEYESLKEKIAEYESILASPEKIDA 453

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II  E+  ++++    RRT I+  + ++   D I  E+  V ++  GY KR+ L  +R Q
Sbjct: 454 IIADEVREIREKYGDERRTEIIGQVDEISTTDLIEEEENAVLITAEGYAKRMSLEEFRVQ 513

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
            RGG G  G  +   D +    I ++   +L F++ G  +    + +P     ARG  L 
Sbjct: 514 SRGGVGVIGASVSPGDEIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLK 573

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            ++ L  GE++ + +   +     N    V  +  G +++  L +F    R+G  A    
Sbjct: 574 RLIRLENGEKVVSALGVKDF----NGKIAVILSPDGYIKKVPLIEFENAKRAGVKA---- 625

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
           S  EI  VE   + + I + T  G  VR   + +    GRN+ GV  + L  GD++  M+
Sbjct: 626 SAGEIQQVELL-EGDSIFIATANGNVVRLRETDV-PEYGRNAKGVIAVRLRDGDRIAWMS 683

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                         Y K          G           S   G ++           + 
Sbjct: 684 ASEGEYLLMLTERGYGKRCDVNEFRFIGRGSMGMIGYRISEKTGKLA----FISACNGEE 739

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +  +SE G+  R  S    +  R   G+    
Sbjct: 740 VFIMSEDGYCIRIDSSTIPVQGRYSSGVVVAR 771



 Score =  127 bits (318), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 106/297 (35%), Gaps = 52/297 (17%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETCTQENDILLTTKLGQCV 706
           V  T  G  +R  L +F   +R G   +   +   DEI     C   + +L+ T  G+  
Sbjct: 494 VLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPGDEIAVFRICNSTDRLLIFTNTGRAF 553

Query: 707 RFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHA------------------- 744
                 I     R + G    R I L  G++V+S   V                      
Sbjct: 554 WINAYEIPKMD-RTARGTTLKRLIRLENGEKVVSALGVKDFNGKIAVILSPDGYIKKVPL 612

Query: 745 ---------------------DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                                +    + I          RL   D  E            
Sbjct: 613 IEFENAKRAGVKASAGEIQQVELLEGDSIFIATANGNVVRLRETDVPEYGRNAKGVIAVR 672

Query: 784 NISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +R   +   E +++L ++E+G+GKR    +FR   R   G+    +S+  + G L 
Sbjct: 673 LRDGDRIAWMSASEGEYLLMLTERGYGKRCDVNEFRFIGRGSMGMIGYRISE--KTGKLA 730

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +   N  +++ ++S+ G  IR+  + I +  R + GVV+    K  + V+++++R+
Sbjct: 731 FISACN-GEEVFIMSEDGYCIRIDSSTIPVQGRYSSGVVVAR--KGVKRVALKKVRK 784



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    A+Y+  +   + + A       +  E    +  + + G + E    +L  +E+  
Sbjct: 434 LKEKIAEYESILASPEKIDAIIADEVREIREKYGDERRTEIIGQVDEISTTDLIEEEENA 493

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + ++ +G+ KR S  +FR+ +R G G+    VS       +      N  D++++ ++ G
Sbjct: 494 VLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPG---DEIAVFRICNSTDRLLIFTNTG 550

Query: 861 TLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSV 894
               +   EI    R  +G     +      E+VVS 
Sbjct: 551 RAFWINAYEIPKMDRTARGTTLKRLIRLENGEKVVSA 587



 Score = 91.0 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 21/220 (9%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DEI + +   +E + +L T  G   R  +   RV   R  VGV G S++ GD++    I 
Sbjct: 479 DEISTTDLIEEEENAVLITAEGYAKRMSLEEFRV-QSRGGVGVIGASVSPGDEIAVFRIC 537

Query: 742 LHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              D         R  ++      +   +     +  L    + E  +S    ++   K 
Sbjct: 538 NSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKRLIRLENGEKVVSALGVKDFNGKI 597

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIIL 855
             IL  S  G+ K+    +F  + R+  G++A         G +     V   + D I +
Sbjct: 598 AVIL--SPDGYIKKVPLIEFENAKRA--GVKA-------SAGEI---QQVELLEGDSIFI 643

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +  G ++R+   ++    R  KGV+       +R+  + 
Sbjct: 644 ATANGNVVRLRETDVPEYGRNAKGVIAVRLRDGDRIAWMS 683


>gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
 gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135]
          Length = 815

 Score =  696 bits (1797), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/892 (33%), Positives = 475/892 (53%), Gaps = 93/892 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE+++ I ++ I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K
Sbjct: 9   EEDKEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K  RI G+V+GKYHPHG+ +IY+AL R+AQD+SLR  ++ GQGNFGS+DGDPPAA R
Sbjct: 69  AFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  L+ D+ + TVDFR NYD S  EP VL A +P +LVNG  GIAVGMATN
Sbjct: 129 YTEARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL E+ D  V ++++  + +  L+ I++GPDFPT A I+    +  AY TG+GS+V
Sbjct: 189 MAPHNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYNESLVKAYTTGKGSVV 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR   HIE+   D   I++T+IPY VNK+++L KIA L++E+++  I+D+RDESDR+G R
Sbjct: 249 IRSRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIR 308

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E+K+G    V++N LY YT L+  FS+N +AL    P++  L  ++  F+  R+E+V
Sbjct: 309 IVLEIKKGFDPHVVMNLLYEYTELRKNFSINNLALVNGIPKQLNLKELISEFIDHRKEIV 368

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR ++ L KARD+AH+L GL I++ ++D V+ IIRFS   + A+  +++          
Sbjct: 369 RRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDAKECIIKE--------- 419

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q  +IL+++L +LT L  + +  E   +   IK+  D
Sbjct: 420 -----------------FNLSEIQANSILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYED 462

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL S  R++ I+++E++++  +    RRT+I+           D + RE+++V ++  G+
Sbjct: 463 ILVSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGF 522

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR+    Y+ Q  GGKG     ++D+D V     V+TH  +L  S+ G +Y    + + 
Sbjct: 523 IKRILQDEYKLQGIGGKGLGSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIK 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             S                                         T  G            
Sbjct: 583 DSSR----------------------------------------TSKG------------ 590

Query: 668 INRSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             ++ +  + L   +EIL+++ C +   +N +L+TT  G+  R      +    R   GV
Sbjct: 591 --QNIRELINLGETEEILAIKNCNELSLDNYLLITTANGKIARIETEGFKTVKSR---GV 645

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
             I L   D V S  IV   D          K  +              +          
Sbjct: 646 IVIKLDDKDFVTSAEIVSKNDK---IICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVRE 702

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                      +   +L VSE G+GKR          R   G      S   + GA+V  
Sbjct: 703 GDMLIKALSAKQGSHLLIVSENGYGKRLEISRVTELKRGATGYTCYKKSD-EKAGAVVDA 761

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V  +D+I+LVS    ++R  V++I    +  +G+ + S  + ++++SV +
Sbjct: 762 ITVAQDDEILLVSKTSKVLRTLVDKISEQGKDARGMQVLSLDE-DKLMSVSK 812



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 73/219 (33%), Gaps = 57/219 (26%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNISEERCQELKL 795
             IVL    DY++ +   + +    R    +       +  + +  +  + +    +L  
Sbjct: 450 FKIVLDLIKDYEDILVSPERVVNIVREEIINLSLKFGDERRTKIIYDEEVLKTSMSDLMQ 509

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKG----------------------------- 826
           +E  I+ ++++GF KR    ++++    GKG                             
Sbjct: 510 RENVIVILTKQGFIKRILQDEYKLQGIGGKGLGSFDLQDKDQVNIALCVNTHDFLLMISN 569

Query: 827 -----IRA---TDVSKINEIG-------------ALVAVFPVND---NDQIILVSDKGTL 862
                +        S     G              ++A+   N+   ++ +++ +  G +
Sbjct: 570 EGKLYVINAYGIKDSSRTSKGQNIRELINLGETEEILAIKNCNELSLDNYLLITTANGKI 629

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            R+     +     ++GV++      + V S E + +++
Sbjct: 630 ARIETEGFKTVK--SRGVIVIKLDDKDFVTSAEIVSKND 666


>gi|329924959|ref|ZP_08279906.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
 gi|328940343|gb|EGG36672.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. HGF5]
          Length = 819

 Score =  696 bits (1796), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/900 (33%), Positives = 484/900 (53%), Gaps = 90/900 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y 
Sbjct: 4   SEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+VMG YHPHG+++IY+ + RMAQ W +  +L++G GN+GS D DP AA RYTE
Sbjct: 64  KSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K TV F+ N+D + +EPVVL +RYPN+LVNG  GI+ G AT IP 
Sbjct: 124 ARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D C+AV+  P+I+LD +M  I+GPDFPTG +I+G  GI +AY TG+G + +R 
Sbjct: 184 HNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGILDAYRTGKGRVYLRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G ++QIV+TEIPYQV K+ ++  +  +  EK++  IA++RDES R+G R+V+
Sbjct: 244 KTDIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A+ IL  L++ T LQ  ++ NMVA+    P++  L  +L A++  + EVV  R
Sbjct: 304 ELKKDADANGILAYLFKKTDLQITYNFNMVAIVNKTPQQLGLKAMLSAYIHHQREVVTHR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA DRAHVL GL  A+  LDEV+  I+ S N + A+  L               
Sbjct: 364 TQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNL--------------- 408

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  +IL L+L RLT L    ++ EL+ L  +I+    IL 
Sbjct: 409 -----------QWMFGFTERQADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILD 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
           S  +L+G+I++EL+ ++++    RR+ I E + ++    E  +  ED++VT+S+ GY+KR
Sbjct: 458 SDKKLIGVIRKELIEIREKYGIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +    R G       +++ D++T LF V+T  ++L F+S G  +   V ++P   
Sbjct: 518 TSMLSF---TRSGGELESSGVKEGDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYK 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G A++N++ + + + I +++P    + +  +  +VF ++ G V+R  L +++    
Sbjct: 575 WKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEAGKS--LVFVSRKGQVKRTDLKEYVTKRS 632

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               A K+ + D I+ V       DI+L +K G  +RF    +    GR S GVRGI L 
Sbjct: 633 GAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIRFNEQEVNAM-GRVSGGVRGIQLR 691

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD+V++   V + + +                                           
Sbjct: 692 DGDEVVAALWVENDEGE------------------------------------------- 708

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE----IGALVAVFP 846
                    ILT+++ G+GKR+   D+   +R GKG+   +  +         A+V  F 
Sbjct: 709 ---------ILTITDLGYGKRSLLLDYPAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFY 759

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
             +  QI   S+ G    +   ++ IA R + G ++    K+ ++V +  +  +E   E 
Sbjct: 760 CREPLQINAYSEDGQAFPIHTEKVPIAERKSIGKLLADVGKNGQIVDLVSLPHAESGKEG 819


>gi|56420285|ref|YP_147603.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
 gi|56380127|dbj|BAD76035.1| DNA topoisomerase IV subunit A [Geobacillus kaustophilus HTA426]
          Length = 814

 Score =  696 bits (1795), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/899 (33%), Positives = 465/899 (51%), Gaps = 91/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYIDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID PD  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 183 ALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++ IV+TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 243 AAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R+EVV  R+
Sbjct: 303 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM               
Sbjct: 363 HFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMA-------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 409 ------------HYGFTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LLG+IK+EL ++K +    RRT I E +    ++ E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          + M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 517 SYRSYSASNG-----QDMGMKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ + +++ L + + +   +P     +      +VF TK G V+R +L+ +      
Sbjct: 572 KEVGQHISHLIPLERDDELVAAVPVSSFNTGEQ---LVFVTKQGLVKRTELAQYQVQRYT 628

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   D++++V        + L T  G  + F    I    G  + GV+GI L 
Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEI-SLVGVRAAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V +   V   +                                             
Sbjct: 688 EGDFVAAACPVRLEEGSSFV---------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                       V+++G  K+ +  +F  S+R+ +G+      K N    +V    V+ +
Sbjct: 708 -----------VVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPH-RVVGAVFVSSD 755

Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           ++++ L ++KG +  +    +R++ R + G  +  T +   VV V +     +    E 
Sbjct: 756 EEMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGPVVDVWKEPAKLLGKGEEG 814


>gi|261419950|ref|YP_003253632.1| DNA topoisomerase IV subunit A [Geobacillus sp. Y412MC61]
 gi|297530089|ref|YP_003671364.1| DNA topoisomerase IV subunit alpha [Geobacillus sp. C56-T3]
 gi|319766764|ref|YP_004132265.1| DNA topoisomerase IV, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261376407|gb|ACX79150.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC61]
 gi|297253341|gb|ADI26787.1| DNA topoisomerase IV, A subunit [Geobacillus sp. C56-T3]
 gi|317111630|gb|ADU94122.1| DNA topoisomerase IV, A subunit [Geobacillus sp. Y412MC52]
          Length = 814

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/887 (33%), Positives = 463/887 (52%), Gaps = 91/887 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLEMPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYMDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+Q+W LR +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKLRNVLVEMHGNNGSIDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLRDIDKETVPFVPNFDDTTDEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID PD  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 183 ALGEVIDAVLMRIDRPDCTVDELMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++ IV+TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 243 AAIEQGKGGKKHIVITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R+EVV  R+
Sbjct: 303 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKEVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  LM               
Sbjct: 363 HFELKKANERKHIVDGLIRALSILDEVIATIRASSDKRDAKERLMA-------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 409 ------------HYGFTEAQAEAIVTLQLYRLTNTDITALRQEAEELDQAIAELTGILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LLG+IK+EL ++K +    RRT I E +    ++ E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLGVIKKELKTMKKQYADERRTVIEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          + M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 517 SYRSYSASNG-----QDMGMKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ + +++ L + + +   +P     +      ++F TK G V+R +L+ +      
Sbjct: 572 KEVGQHISHLIPLERDDELVAAVPVSSFNTGEQ---LIFVTKQGLVKRTELAQYQVQRYT 628

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ +   D++++V        + L T  G  + F    I    G  + GV+GI L 
Sbjct: 629 RPLVAVNVKEDDDVIAVYATDGCGHLWLATHDGHALLFAEEEI-SLVGVRAAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V +   V   +                                             
Sbjct: 688 EGDFVAAACPVRLEEGGSFV---------------------------------------- 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                       V+++G  K+ +  +F  S+R+ +G+      K N    +V    V+ +
Sbjct: 708 -----------VVTQRGAVKKVAMSEFEPSSRAKRGVVIVREVKSNPH-RVVGAVFVSSD 755

Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           ++++ L ++KG +  +    +R++ R + G  +  T +   VV V +
Sbjct: 756 EEMVGLRTEKGVVETIEAASLRLSDRYSTGSFVVDTDEAGMVVDVWK 802



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 84/257 (32%), Gaps = 24/257 (9%)

Query: 655 GNVRR---NKLSDFIQINRSGKIAMKLDSRDEILSVE---TCTQENDILLTTKLGQCVRF 708
           G +++        +    R+      ++   E L V+       E+ I+  TK G   R 
Sbjct: 462 GVIKKELKTMKKQYADERRTV-----IEEEIEELKVKVEALIPAEDVIVTVTKEGYVKRT 516

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHADADYDERICYMKHMSAQRRLI 765
              +     G      + + + + D++++   M                   +     + 
Sbjct: 517 SYRSYSASNG------QDMGMKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIR 570

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
             +  +  S       +  +            + ++ V+++G  KRT    +++  R  +
Sbjct: 571 WKEVGQHISHLIPLERDDELVAAVPVSSFNTGEQLIFVTKQGLVKRTELAQYQVQ-RYTR 629

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            + A +V +      ++AV+  +    + L +  G  +     EI +      GV     
Sbjct: 630 PLVAVNVKE---DDDVIAVYATDGCGHLWLATHDGHALLFAEEEISLVGVRAAGVKGIQL 686

Query: 886 AKDERVVSVERIRESEI 902
            + + V +   +R  E 
Sbjct: 687 KEGDFVAAACPVRLEEG 703


>gi|196250914|ref|ZP_03149598.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
 gi|196209555|gb|EDY04330.1| DNA topoisomerase IV, A subunit [Geobacillus sp. G11MC16]
          Length = 814

 Score =  694 bits (1792), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/899 (33%), Positives = 468/899 (52%), Gaps = 91/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 3   ERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 63  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 123 RLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 183 ALGEVIDAVLLRIDRPNCTVDDLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +  I++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 243 ATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R++VV  R+
Sbjct: 303 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  L+               
Sbjct: 363 HFELKKANERKHIVEGLIKALSILDEVIATIRASSDKRDAKDRLIA-------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 409 ------------NYGFTEAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILAD 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL S+K +    RRT I E +    +  E  I  ED++VTV+  GYVKR 
Sbjct: 457 EKKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRT 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          + M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 517 SYRSYSASNG-----QDIGMKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ + +++ + + + +  ++P    E+   N  +VF TKHG V+R +LS +      
Sbjct: 572 KDVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQYQVQRYT 628

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ L   D++++V        I + T  G  + F    I    G  + GV+GI L 
Sbjct: 629 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEI-SLVGVRAAGVKGIQLK 687

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V ++  +   ++                                            
Sbjct: 688 EGDFVAAVCPICPEESGS------------------------------------------ 705

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ V+++G  K+ +  +F  ++R+ +G+      K N    +V     ND 
Sbjct: 706 ---------LIVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPH-RIVGAVMTNDG 755

Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +++I + ++KG    V V  +R+  R   G  +  T +   V+ V +  E  +    E 
Sbjct: 756 EEMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDVWKEPEKLLGKGEEE 814


>gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 793

 Score =  694 bits (1790), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/898 (32%), Positives = 457/898 (50%), Gaps = 112/898 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE +GK+HPHG+A++YDAL RMAQD+++R  LIEGQGNFGS+DGDPPAA RYTE 
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           N  EV +    + + PD  ++ L   I+GPDFPTG VI   +  + + Y + RGSI I+G
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G+R++IV+ EIPYQVNK  +++KIAELVR  +   I+DLRDESDR G R+VI
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+ +L +LY+ T L+  F VN+  L   +P    L  +L+ F+  R E++ RR
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R H++ GL  A+ N D+V+ I+R S +   AR                  
Sbjct: 362 TLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARE----------------- 404

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL++RL+R T L    +++E   L  +I+    ILS
Sbjct: 405 ---------LLTSQFNLSETQANAILDMRLSRFTSLETQKLKDESTELKQKIERYKQILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S    + +  +E   +  +    R+T I        +++   +E  +  + + G +    
Sbjct: 456 SDDEKIKVFIEETDELVRKYGDQRKTTIA------TEKELTFKEHFMFAILNTGRIVNYK 509

Query: 553 LSVYRAQRRGGKGRSG---VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +    ++    +       + + + + +  +  V     + FF+  G  Y   V  LP G
Sbjct: 510 VEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKG 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +         L++         +     +       V   TK G ++R    D     
Sbjct: 570 EDK---------LNIEGE------IVGTAYQGEGEENRVFLITKKGIIKRMSDEDIF-YK 613

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G + M L+  DE++        + I + TK    + F  + +R   G  + GV  I L
Sbjct: 614 SQGHMVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVR-ITGDKAKGVEAIDL 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V     +   +                                            
Sbjct: 673 DENDEVAGAFFLNGHE-------------------------------------------- 688

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    ++L  +  G+ K     +F I  R+ KG+ A  +   N+   +V++ PVN+
Sbjct: 689 ---------YLLVSTSFGYMKHVEKTEFPIKKRAQKGLMAVKL---NKGDYVVSILPVNE 736

Query: 850 NDQIILVSDKGTLIRVPVN--EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +D++++ + +G L+++ ++   I I  R + G  +F   + +R+V+V ++   E   E
Sbjct: 737 SDEVLINTKRGKLLKLKIDKEAIPIEKRTSLGKNLFRF-EADRIVNVLKLPLFEESKE 793


>gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
 gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1]
          Length = 836

 Score =  693 bits (1789), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/844 (36%), Positives = 469/844 (55%), Gaps = 39/844 (4%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +    +    +T   + +E+++SYL YA++VI+GRA+PD RDGLKPV RRIL+ MM +G+
Sbjct: 1   MIETPDNLGRVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + N+ Y K AR+ GE MGKYHPHG++AIY+ + R+AQ+WS+R  L++GQGNFGS+DGD  
Sbjct: 61  KHNQPYKKSARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R  +    +L D+ +DTVD+ PN+D S +EP+ L +  PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEARFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVVD    +I  PD +LD LM  + GPDFPTG +I+GR GI +AY TGR
Sbjct: 181 MATNMAPHNLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIMGREGILDAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++RG  H+E+ S  +  +V+TEIPY +NK  ++E I + V+ K+I  ++D+RDESDR
Sbjct: 241 GKIILRGKCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+EL R A A+++  QLY  TSLQS F +  +AL   KP    L  +L+ F+ +R
Sbjct: 301 KGLRLVVELTREADAELVQRQLYSRTSLQSTFGIINLALVDNKPVELNLKQLLETFLNYR 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV RRT++ L+KA  R H++ GL  A+  +D+V+ IIR +   + A+  L+       
Sbjct: 361 RSVVRRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLI------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                              G +  +++Q +AIL++RL RLTGL R+ +  EL  L  +I+
Sbjct: 414 -------------------GELAFTDLQAQAILDMRLQRLTGLEREKLLAELAQLLADIE 454

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
               IL + S L G+I  EL  ++ +    RRT +           ED +  ED++VT+S
Sbjct: 455 RYRSILDNPSVLDGVINDELGELRRKFADERRTELSAALPTEGDSLEDLLPEEDILVTLS 514

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++R PL  Y  Q RGGKGR G V++D+D V  + + STH+ +  F+S G V+  + 
Sbjct: 515 KDGFLRRSPLENYNLQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRG 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P      +G+A+   +SL   ER+  +    E+       +++F TK G  +R    
Sbjct: 575 HMIPET-KTGKGRAVSKFVSLTDDERVVAMRGTLEET---ATSHLLFITKRGIGKRMDAE 630

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +   + R+G+  + LD  DEI ++      + +LL T   +      S  R   GR + G
Sbjct: 631 ELENLTRAGRRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPM-GRAARG 689

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + LA  D++I+   V   +         +   +                        
Sbjct: 690 VKAMKLAPDDRIIAAWTVAPDENLLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGART 749

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E  ++  +EKG   R S+ D  + +R+  G     ++     G L+A
Sbjct: 750 GRLAAAVGVASSDEVGLM--TEKGRMIRLSASDIPLLSRTATGSIVLRLND----GDLLA 803

Query: 844 VFPV 847
              V
Sbjct: 804 SVSV 807



 Score =  100 bits (249), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 14/256 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V   + G +RR     F    R+   A      D +       +E+ ++  +K G   R 
Sbjct: 469 VINDELGELRR----KFADERRTELSAALPTEGDSLED--LLPEEDILVTLSKDGFLRRS 522

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY--DERICYMKHMSAQRRLIS 766
           P+        R   G  G  L   D+V  MA+       +    R               
Sbjct: 523 PLENYN-LQNRGGKGRLGAVLKDDDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETK 581

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                  S     + +  +   R    +     +L ++++G GKR  + +     R+G+ 
Sbjct: 582 TGKGRAVSKFVSLTDDERVVAMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGR- 640

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                V  +++   + A+   + N +++LV+ K     V  +E R   RA +GV     A
Sbjct: 641 ----RVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHVDESEFRPMGRAARGVKAMKLA 696

Query: 887 KDERVVSVERIRESEI 902
            D+R+++   +   E 
Sbjct: 697 PDDRIIAAWTVAPDEN 712



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 15/231 (6%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  G  KR+         R G+    +   D D +  +     ++ VL  +S       
Sbjct: 618 ITKRGIGKRMDAEELENLTRAGRRVLSLD--DGDEIAAIIDTDGNSKVLLVTSKAKAAHV 675

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
                      ARG   +  + L   +RI        DE+      ++  ++ G  +R K
Sbjct: 676 DESEFRPMGRAARG---VKAMKLAPDDRIIAAWTVAPDEN------LLLVSETGIGKRTK 726

Query: 662 LSDFIQINRSG--KIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAG 718
             +F   +R      AM L +R   L+        +++ L T+ G+ +R   S I     
Sbjct: 727 PEEFPIHHRGSGGVQAMHLGARTGRLAAAVGVASSDEVGLMTEKGRMIRLSASDI-PLLS 785

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           R + G   + L  GD + S++++    A         + ++        + 
Sbjct: 786 RTATGSIVLRLNDGDLLASVSVIPAPMAPESLTDADPRQLTLPVDEPETEA 836


>gi|319653141|ref|ZP_08007243.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
 gi|317395062|gb|EFV75798.1| hypothetical protein HMPREF1013_03858 [Bacillus sp. 2_A_57_CT2]
          Length = 816

 Score =  693 bits (1788), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/903 (33%), Positives = 465/903 (51%), Gaps = 91/903 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
              +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K 
Sbjct: 2   SSAEKFRDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHVEGNTHEKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG+ ++YDA+ RM+QDW +R LL+E  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKVRNLLVEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K TV+F PN+D +  EP VL A YPN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSALSSELLRDIEKRTVEFIPNFDDTSSEPTVLPAVYPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG +  +D PD  +D LME I+GPDFPTG +I G  GIK AY TGRG I++
Sbjct: 182 PPHHLNEIIDGVILRMDKPDCSIDDLMEHIKGPDFPTGGIIQGVDGIKKAYETGRGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG +  E   G ++QIV+TEIPY+VNKA +++KI E   ++++  IA++RDE+DR G R+
Sbjct: 242 RGKAEFEDLRGGKKQIVITEIPYEVNKANLVKKIDEFRLDRKVEGIAEVRDETDRTGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A  + +L+ LY+ + LQ  ++ NMVA++   P+   L  +L A++  R+EVV 
Sbjct: 302 VIELKKDADPEGVLHYLYKNSDLQIPYNFNMVAIHNRHPKLMGLRELLDAYIGHRKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+++ L KA  R H++ GL  A++ LDEV+  IR S +   A+  L+ +          
Sbjct: 362 RRSQFELQKAEARQHIVEGLMKALSILDEVITTIRASKDKRDAKDNLIAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      +R E   L   I E   I
Sbjct: 412 ----------------FEFTEPQAEAIVSLQLYRLTNTDITALRAEAEDLAKLIGELKSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTR--IVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S  +L  +IK+EL  VK      RRTR       + +  E  +  ED++VTV+  GYV
Sbjct: 456 LESEKKLFSVIKKELRDVKKRFADERRTRIEAEIEEIKINLEVLVASEDVIVTVTKEGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D +     ++T   +L F++ G      V +LP 
Sbjct: 516 KRTSQRSFAASNG-----QDFGMKDSDRLIAKLDMNTTDVLLVFTNKGNYLYCPVHQLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + NI+ +++ E I   +P  + E+     Y++F TK+G V++ +L  +   
Sbjct: 571 IRWKDLGQHIANIIPIDRNESIVRAIPVKDFET---EEYLLFMTKNGMVKKTELKAYKAQ 627

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  + A+ +   DE+L V       +I L T  G  + F    + +   R + GV+GI
Sbjct: 628 RYSKPLVAVNVKGTDEVLDVYLTDGTKEIFLATHQGFGLWFHEEEVSIVGARAA-GVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  GD V    ++                                              
Sbjct: 687 NLKDGDFVAGAQLIED-------------------------------------------- 702

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   KEQ ++ V+++G  K+    +F  ++R+ +G+      K N    +V    V
Sbjct: 703 -------QKEQSVVIVTQRGSIKKMKLSEFERTSRAKRGVVMLRELKSNPH-RIVGCVIV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
               ++ + ++KG +  V V+ IR   R + G  I   ++  +   + R  E + VD++ 
Sbjct: 755 RSKHELYIETEKGHIEAVNVSSIRFNDRYSNGSFIIDESESGKAKCIWR-AEVKEVDDSH 813

Query: 908 STE 910
            TE
Sbjct: 814 VTE 816


>gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG']
          Length = 816

 Score =  693 bits (1787), Expect = 0.0,   Method: Composition-based stats.
 Identities = 338/829 (40%), Positives = 489/829 (58%), Gaps = 36/829 (4%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I DEM+ +YL Y+++VI+GRA+PD+RDGLKPV RR+LF M +MGV     Y K ARI 
Sbjct: 10  VPIDDEMKTAYLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIV 69

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD   R+ Q ++LR  LI+GQGNFGSVDGD PAA RYTE RL+  
Sbjct: 70  GDVIGKYHPHGDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEAL 129

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +  ++ +L ++TV+F PNYD S QEP VL AR P +L+NG  GIAVGMATNIP HN+ E+
Sbjct: 130 SEEMMAELEEETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEI 189

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +A+IDNPD+ +D L+ I+ GPDFPTG +I+GR+GI++A  TGRGSIV+RGV+ IE+
Sbjct: 190 IDALLALIDNPDLSVDDLLAIVHGPDFPTGGLIMGRSGIESALRTGRGSIVMRGVADIEE 249

Query: 259 -TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            T  DR  I++ EIPYQVNKA ++E+IAELVRE  +  IAD+RDESDR G RVVI+LKR 
Sbjct: 250 STRADRMAIIIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRD 309

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
           A+  V+LN+LY  T LQ+ F  N VAL   +P   +L   L  F++FR++VV RRT + L
Sbjct: 310 ANPPVVLNRLYAQTPLQTSFGYNFVALVNQRPMILSLREALAHFLSFRQDVVTRRTLFRL 369

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KARDR H+L GL  A+  +D+++ +IR S +P+ AR  L+++                 
Sbjct: 370 RKARDRFHILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQ----------------- 412

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q RAIL++RL RLT L RD I  E   + + I    +IL SRSRL
Sbjct: 413 ---------FAFSEIQARAILDMRLQRLTALERDKIDAEYEEVRVLILGLEEILGSRSRL 463

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++E +++++     R+TRIV    ++  E  I  +   +T+++ GY+KRV    Y 
Sbjct: 464 MAVIREEFMALRENYGDARKTRIVPEDGEISIESMIPNDPCYITLTYQGYIKRVSHDAYP 523

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            QRRGGKGRSGV ++++D V      + H ++LFF+ +G VY+ K   +P     ARGK 
Sbjct: 524 TQRRGGKGRSGVALKEDDAVIITLTPTAHETILFFTDIGKVYRVKAHEIPEVQRTARGKP 583

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +   L L   E++T ++     E       +VF T +G ++R  LS +  I +SG IA+ 
Sbjct: 584 IRGFLPLAPEEKVTRMLNVASFE---GERSLVFVTVNGIIKRTALSAYSSIRQSGIIALT 640

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D +  V     ++ +L+ T+ G  + FPI  +    GR + GVR I L + D+V  
Sbjct: 641 LREGDRLAQVLVAEADSHVLVATRRGMAILFPIHEV-TEQGRTASGVRAIRLREEDRVAD 699

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             IV   D                 +        +    +  + +        +     +
Sbjct: 700 AEIVTETDPVAVVTEKGYGKRLDVAKFRHQHRGGMGLKISRGAEKIGAVVSLVKAGNTDD 759

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
             I  ++ KG   R  + + R   RS +G+    ++       +V+   
Sbjct: 760 LTI--ITSKGVTNRVQANELRTMGRSAQGVIVMRLAD---DDTIVSAVV 803



 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/329 (20%), Positives = 121/329 (36%), Gaps = 62/329 (18%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQE 693
              +    N+   +  T  G ++R     +    R   G+  + L   D ++   T T  
Sbjct: 493 ISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAVIITLTPTAH 552

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG------------------------------ 723
             IL  T +G+  R     I     R + G                              
Sbjct: 553 ETILFFTDIGKVYRVKAHEIPEVQ-RTARGKPIRGFLPLAPEEKVTRMLNVASFEGERSL 611

Query: 724 ----VRGI--------------------SLAKGDQVISMAIVLHADADYDERICYMKHMS 759
               V GI                    +L +GD++   A VL A+AD    +   + M+
Sbjct: 612 VFVTVNGIIKRTALSAYSSIRQSGIIALTLREGDRL---AQVLVAEADSHVLVATRRGMA 668

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               +     +  T+    +            E+  +   +  V+EKG+GKR     FR 
Sbjct: 669 ILFPIHEVTEQGRTASGVRAIRLREEDRVADAEIVTETDPVAVVTEKGYGKRLDVAKFRH 728

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R G G++ +  ++  +IGA+V++    + D + +++ KG   RV  NE+R   R+ +G
Sbjct: 729 QHRGGMGLKISRGAE--KIGAVVSLVKAGNTDDLTIITSKGVTNRVQANELRTMGRSAQG 786

Query: 880 VVIFSTAKDERVVSVERIRESEIVDEAES 908
           V++   A D+ +VS       E+  E E+
Sbjct: 787 VIVMRLADDDTIVSAVVSPPREVEGEQEN 815


>gi|52080435|ref|YP_079226.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|52785814|ref|YP_091643.1| DNA topoisomerase IV subunit A [Bacillus licheniformis ATCC 14580]
 gi|319645606|ref|ZP_07999838.1| ParC protein [Bacillus sp. BT1B_CT2]
 gi|52003646|gb|AAU23588.1| subunit of DNA topoisomerase IV [Bacillus licheniformis ATCC 14580]
 gi|52348316|gb|AAU40950.1| ParC [Bacillus licheniformis ATCC 14580]
 gi|317392492|gb|EFV73287.1| ParC protein [Bacillus sp. BT1B_CT2]
          Length = 807

 Score =  692 bits (1785), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/890 (33%), Positives = 470/890 (52%), Gaps = 93/890 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  ++K + K A+
Sbjct: 8   HDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHAEGNTYDKNFRKAAK 67

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
             G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYTE RL 
Sbjct: 68  TVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYTEARLA 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT+IP H+LG
Sbjct: 128 AIASELLRDIDKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EV+D  +  ID+P+  +D LME ++GPDFPTG +I G+ GIK AY TG+G I+IRG + I
Sbjct: 188 EVIDAVIKRIDSPNCSVDDLMEFVKGPDFPTGGIIQGKEGIKKAYETGKGKIIIRGKAEI 247

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E   G R+QIV+TEIP++VNKA +++K+ E   E+++  I+++RDE+DR G R+VIELK+
Sbjct: 248 ETIRGGRQQIVITEIPFEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIVIELKK 307

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A A  ILN LY+ T LQ  ++ NMVA++  +P    L  IL A++  ++EV+  R++Y 
Sbjct: 308 EADAQGILNFLYKNTDLQIPYNFNMVAIHNRRPMLMNLTSILDAYIGHQKEVITNRSQYE 367

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L KA++R H++ GL  A++ LDEV+  IR S +   A+  L+++                
Sbjct: 368 LKKAKERHHIVEGLMKALSILDEVIATIRSSNDKRDAKNNLIEK---------------- 411

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                        +E Q  AI+ L+L RLT      ++ E   L  +IKE  +ILS+  +
Sbjct: 412 ----------FAFTEPQAEAIVSLQLYRLTNTDITALQEEAKELDQKIKELEEILSNDKK 461

Query: 497 LLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           LL +IK  L  VK    + RR+        + +  E  +  ED+ VTV+  GY+KR    
Sbjct: 462 LLKVIKDSLKKVKKTYASQRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYIKRTSQR 521

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            + A            M+D D +     ++T   +L F++ G      V +LP    +  
Sbjct: 522 SFAASNG-----QDFGMKDTDRLLCQLEMNTTDVLLLFTNKGSYVYCPVHQLPDIRWKDL 576

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G+ + NI+S++  E I   +P  E      + Y++F TK+G  +R +L  +     S  +
Sbjct: 577 GQHITNIISIDSDESIVKAIPVREFT---ESEYLLFFTKNGMAKRTQLMQYKAQRYSKAL 633

Query: 675 -AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A+ L   DE++ V       D+ + T  G  + F    + V   R + GV+G++L  GD
Sbjct: 634 VALNLKGDDEVVDVHVTDGTKDLFIATHSGYGLWFTEDEVSVVGARAA-GVKGVNLKDGD 692

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V S  ++   D                                                
Sbjct: 693 FVASGQVLEEKDV----------------------------------------------- 705

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 ++ V+++G  KR +  +F  ++R+ +G+      K      +  +   + +DQI
Sbjct: 706 ------LVLVTQRGSIKRMNRSEFEKTSRAKRGVLMLRELKKKPH-RIAGLLACSYHDQI 758

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            L ++KG    + V EI++  R + G  I    +   V  V  I + E+ 
Sbjct: 759 TLQTEKGITEEMLVKEIKLHDRYSNGSFIIDEDEAGEVTDV-WISKHELE 807


>gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 745

 Score =  691 bits (1784), Expect = 0.0,   Method: Composition-based stats.
 Identities = 329/727 (45%), Positives = 478/727 (65%), Gaps = 38/727 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    S+E        V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M
Sbjct: 31  MPKATDLSNEAN------VYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSM 84

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + K ARI G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+
Sbjct: 85  SEMGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSI 144

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K    LL D+GKDT+D+R N+D S  EPVVL A+ PN+L+NG  
Sbjct: 145 DGDEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGAN 204

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEVVDG VA+IDNP+I +D L+  I+GPDFPTG +I G+ GI +A
Sbjct: 205 GIAVGMATNIPPHNLGEVVDGIVALIDNPEISIDELIGYIKGPDFPTGGIINGKQGIYDA 264

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + + G   IE +   R+ IVVTE+PYQVNK+ ++EKIA+LV++K++  I+DLR
Sbjct: 265 YKTGRGKLRVAGRVEIETSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLR 324

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VIELK+G  +++ILN LY++T LQ+ F V M+AL    P    L  +L+ 
Sbjct: 325 DETDRDGIRIVIELKKGEESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQK 384

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R EV+ RRT++ L KAR+RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +
Sbjct: 385 YLEHRFEVITRRTEFELKKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELIDK 444

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE+Q +AIL++RL RLTGL RD I  E N L
Sbjct: 445 --------------------------FEFSEIQAKAILDMRLQRLTGLERDKINQEYNEL 478

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I++ + ILS  S++ GIIK+E L +K++    RRT I     ++  ED I  E++VV
Sbjct: 479 MQLIEKLMGILSDDSKIYGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVV 538

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           T++  GYVKRV +  YR+Q+RGG G +     ++D V D++I     ++L F++ G V+ 
Sbjct: 539 TLTEKGYVKRVAIDTYRSQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFS 598

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV+ +P    QARGK + NI++L+  E+++TI+   E E    N  + F T++G V+++
Sbjct: 599 IKVYEIPETGKQARGKLIGNIINLDNDEKVSTIIKVREFE---KNRNLFFVTRNGVVKKS 655

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAG 718
           +L+ F  I ++GK A++L+  DE++ +     + E++I   T+ G  ++F    +R   G
Sbjct: 656 ELTLFSNIMKAGKRAIRLNDDDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSM-G 714

Query: 719 RNSVGVR 725
            ++VGVR
Sbjct: 715 TSAVGVR 721



 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +  +   +E    +  + +    +E   ++L   E+ ++T++EKG+ KR +   +R   R
Sbjct: 500 KEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKR 559

Query: 823 SGKGIRATDVSKINEIGALV-AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV- 880
            G G+ AT+  +      +V  ++     D +++ + KG +  + V EI    +  +G  
Sbjct: 560 GGIGVNATNTVE----DDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615

Query: 881 --VIFSTAKDERVVSVERIRESE 901
              I +   DE+V ++ ++RE E
Sbjct: 616 IGNIINLDNDEKVSTIIKVREFE 638



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 11/198 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E  ++  T+ G   R  I   R    R  +GV   +  + D V  M I    D   
Sbjct: 530 LIKDEEVVVTLTEKGYVKRVAIDTYRSQK-RGGIGVNATNTVEDDVVKDMYIAKALDTLL 588

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               +   +   +            ++     +   +  +S         K + +  V+ 
Sbjct: 589 IFTTKGKVFSIKVYEIPETGKQARGKLIGNIINLDNDEKVSTIIKVREFEKNRNLFFVTR 648

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLI 863
            G  K++    F    ++GK  RA  +   N+   +  + +   +  D+I   +  G  I
Sbjct: 649 NGVVKKSELTLFSNIMKAGK--RAIRL---NDDDEVMFIGLTSGSGEDEIFAATRNGIAI 703

Query: 864 RVPVNEIRIASRATKGVV 881
           +    ++R    +  GV 
Sbjct: 704 KFSEKDVRSMGTSAVGVR 721


>gi|138895302|ref|YP_001125755.1| DNA topoisomerase IV subunit A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266815|gb|ABO67010.1| DNA topoisomerase IV A subunit [Geobacillus thermodenitrificans
           NG80-2]
          Length = 816

 Score =  691 bits (1782), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/899 (33%), Positives = 468/899 (52%), Gaps = 91/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K + K
Sbjct: 5   ERLLELPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYVDGNTADKPFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 65  AAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRNVLIEMHGNNGSLDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV F PN+D +  EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSAIAAELLRDIDKETVAFVPNFDDTTNEPTVLPAMFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
            LGEV+D  +  ID P+  +D LM ++ GPDFPTG +I G+ GI+ AY TGRG I+IR  
Sbjct: 185 ALGEVIDAVLLRIDRPNCTVDNLMTVLPGPDFPTGGIIQGKDGIRKAYETGRGKIIIRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +  I++TE+PY+VNKA +++KI EL  +K++  IAD+RDE+DR G  +VIE
Sbjct: 245 ATIEQAKGGKRHIMITELPYEVNKANLVKKIDELRLDKKLDGIADVRDETDRNGLSIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ ILN LY+ T LQ  +S NMVA++  +P+  +L  +L A++A R++VV  R+
Sbjct: 305 LKKDADAEAILNYLYKNTDLQVPYSFNMVAIHERRPKLMSLPELLDAYIAHRKDVVTNRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA +R H++ GL  A++ LDEV+  IR S +   A+  L+               
Sbjct: 365 HFELKKANERKHIVDGLIKALSILDEVIATIRASSDKRDAKDRLIA-------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT      +R E   L   I E   IL+ 
Sbjct: 411 ------------NYGFTEAQAEAIVTLQLYRLTNTDITALRQEAEGLDKTIAELTAILAD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK+EL S+K +    RRT I E +    +  E  I  ED++VTV+  GYVKR 
Sbjct: 459 EKKLLAVIKKELKSMKKQYADERRTVIEEEIEELKVNVEALIPAEDVIVTVTKEGYVKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          + M++ D +     ++T   +L F+  G+     V  LP    
Sbjct: 519 SYRSYSASNG-----QDIGMKETDRLLAQLEMNTTDVLLLFTRRGYYLYCPVHTLPDIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ + +++ + + + +  ++P    E+   N  +VF TKHG V+R +LS +      
Sbjct: 574 KDVGQHISSLIPIERDDELVAVVPVSSFET---NEQLVFVTKHGMVKRTELSQYQVQRYT 630

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+ L   D++++V        I + T  G  + F    I    G  + GV+GI L 
Sbjct: 631 RPLVAVNLKGDDQVIAVYATDGRGLIWMATHDGYALLFAEEEI-SLVGVRAAGVKGIQLK 689

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +GD V ++  +   ++                                            
Sbjct: 690 EGDFVAAVCPICPEESGS------------------------------------------ 707

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ++ V+++G  K+ +  +F  ++R+ +G+      K N    +V     ND 
Sbjct: 708 ---------LIVVTQRGAVKKMALSEFEPTSRARRGVMIVREVKSNPH-RIVGAVMTNDG 757

Query: 851 DQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           +++I + ++KG    V V  +R+  R   G  +  T +   V+ V +  E  +    E 
Sbjct: 758 EEMIGMRTEKGVTETVDVASLRLTDRYGTGSFLIDTDEAGMVIDVWKEPEKLLGKGEEE 816


>gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 793

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/898 (32%), Positives = 456/898 (50%), Gaps = 112/898 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K
Sbjct: 2   EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE +GK+HPHG+A++YDAL RMAQD+++R  LIEGQGNFGS+DGDPPAA RYTE 
Sbjct: 62  SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           N  EV +    + + PD  ++ L   I+GPDFPTG VI   +  + + Y + RGSI I+G
Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G+R++IV+ EIPYQVNK  +++KIAELVR  +   I+DLRDESDR G R+VI
Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A A+ +L +LY+ T L+  F VN+  L   +P    L  +L+ F+  R E++ RR
Sbjct: 302 ELKRDADAEKVLKKLYKSTPLEKNFPVNLTVLVDKQPRVLNLKELLQEFIKHRIEIITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R H++ GL  A+ N D+V+ I+R S +   AR+                 
Sbjct: 362 TLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARQ----------------- 404

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL++RL+R T L    +++E   L  +I+    ILS
Sbjct: 405 ---------LLTSQFNLSETQANAILDMRLSRFTSLETQKLKDESIELKQKIERYKQILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S +  + +  +E   +  +    R+T I        +++   +E  +  + + G +    
Sbjct: 456 SDNEKIKVFIEETDELVRKYGDQRKTTIA------TEKELTFKEHFMFAILNTGRIVNYK 509

Query: 553 LSVYRAQRRGGKGRSG---VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +    ++    +       + + + + +  +  V     + FF+  G  Y   V  LP G
Sbjct: 510 VEDETSKADILQRIINSLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKG 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +         L++         +     +       V   TK G ++R    D     
Sbjct: 570 EDK---------LNIEGE------IVGTAYQGEGEENRVFLITKKGIIKRMSDEDIF-YK 613

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             G   M L+  DE++        + I + TK    + F  + +R   G  + GV  I L
Sbjct: 614 SQGHTVMPLNEGDELVVAVADRHPSYIGIYTKNADLLLFERNEVR-ITGDKAKGVEAIDL 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D+V     +   +                                            
Sbjct: 673 DENDEVAGAFFLNGHE-------------------------------------------- 688

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    ++L  +  G+ K     +F I  R+ KG+ A  +   N+   +V++ PVN 
Sbjct: 689 ---------YLLISTSFGYMKLVEKTEFPIKKRAQKGLLAVKL---NKDDYVVSILPVNK 736

Query: 850 NDQIILVSDKGTLIRVPVN--EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           +D++++ +  G L+++ ++   I +  R + G  +F   + +R+V+V ++   E   E
Sbjct: 737 SDEVLINTKHGKLLKLKIDKETIPVEKRTSLGKNLFKF-EADRIVNVLKLPLFEESKE 793


>gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
 gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1]
          Length = 625

 Score =  690 bits (1781), Expect = 0.0,   Method: Composition-based stats.
 Identities = 322/624 (51%), Positives = 426/624 (68%), Gaps = 26/624 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  V I +EM+NSY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  NK Y K 
Sbjct: 7   KVLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++++YDA+ RMAQD+S R  LI+G GNFGSVDGD  AA RYTE R
Sbjct: 67  ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + + A  +L D+ KDTVDF PNYD S +EP VL A+ PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVD  V +IDNP++ +  LM  I+GPDFPTG +ILGR GIK AY TGRG I +R  +
Sbjct: 187 LGEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLILGRDGIKQAYTTGRGVIKMRAQA 246

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +EK S  + +IVVTEIPYQVNKA ++E IA LVR+K I  I DLRDESDR G RVVIEL
Sbjct: 247 RVEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIEL 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           +R  +ADVILNQLY++T LQ  F V M+AL   +P    L  +L  ++  +++V++RRTK
Sbjct: 307 RRDVNADVILNQLYKHTQLQETFGVIMLALVDGRPRILNLRDMLHYYLEHQKDVIIRRTK 366

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ +LDEV+  IR S  PE AR  L+ +              
Sbjct: 367 FELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAK-------------- 412

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q +AIL++RL RLTGL R+ I  E   +   I+    +L+  
Sbjct: 413 ------------FALSEKQAQAILDMRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADE 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            +++GIIK ELL VK      RRT I   +  +E ED I  ED+V+T++H GYVKR+P+ 
Sbjct: 461 RKVMGIIKDELLDVKKRFGDARRTVITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVD 520

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            YR+QRRGG+G +G+  ++EDFV  LF+ +TH ++LFF++ G VY+ K + LP     A+
Sbjct: 521 TYRSQRRGGRGVTGMGTKEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAK 580

Query: 615 GKALINILSLNQGERITTIMPFPE 638
           G A+IN+L + + E+IT ++P  +
Sbjct: 581 GSAIINLLPMEKDEKITAVIPIKD 604



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 107/272 (39%), Gaps = 26/272 (9%)

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTK 701
            Y +   K   +RR K     +      I     + LD  DE+++    ++  +I    +
Sbjct: 351 HYYLEHQKDVIIRRTKFE-LEKARARAHILEGLKIALDHLDEVITTIRQSRTPEI---AR 406

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYM 755
                +F +S       + +  +  + L      + +++      VL      +  +   
Sbjct: 407 DALIAKFALSE------KQAQAILDMRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADE 460

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           + +    +    D ++       + +  ++S+   ++L   E  ++T++ +G+ KR    
Sbjct: 461 RKVMGIIKDELLDVKKRFGDARRTVITSDVSKLEVEDLIANEDIVITITHQGYVKRLPVD 520

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            +R   R G+G+      + + +  L   F    +  I+  ++KG + R+   E+  A R
Sbjct: 521 TYRSQRRGGRGVTGMGTKEEDFVEHL---FVATTHHNILFFTNKGRVYRLKGYELPDAGR 577

Query: 876 ATKGVVIFST---AKDERVVSVERIRESEIVD 904
             KG  I +     KDE++ +V  I++S   D
Sbjct: 578 TAKGSAIINLLPMEKDEKITAVIPIKDSAPTD 609


>gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
 gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106]
          Length = 855

 Score =  689 bits (1779), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/917 (33%), Positives = 468/917 (51%), Gaps = 118/917 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 11  QVIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 130

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    +  LL  +G+ TVDF  N+D S QEP VL A+ P +L+NG  GIAVGMATN+P H
Sbjct: 131 LASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIAVGMATNVPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDN D+  + L  II  PDFPTG  I+   GI  AY  GRGSIV+RGV
Sbjct: 191 NLGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIVSTDGIAEAYTQGRGSIVMRGV 250

Query: 254 SHIEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+         +  IVVTE+P+QVNKA+ +EK A LV   R+  I+D+RDESDR G 
Sbjct: 251 AKIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGISDIRDESDRDGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR AS  V+L+ LY+ T L S F    +AL   +P + TL  IL+ F+ FRE+ 
Sbjct: 311 RVVIELKREASPQVVLHHLYQQTDLMSKFGAIFLALVDSQPRQLTLKQILQEFLNFREQT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+  + L  A  R H++ GL  A+ANLD V+ I+R +P+  TA+              
Sbjct: 371 LIRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAK-------------- 416

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       I  +  + +SE Q  AIL + + RLTGL R  ++ E   L  +I++  
Sbjct: 417 ------------ISLESDLQMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLR 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC---------------- 532
            ++  RS L+  +K+EL S+K +   PRRTRI+      + E                  
Sbjct: 465 RLIDDRSELMKSLKKELRSLKRQYGDPRRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQT 524

Query: 533 --------IVREDMVVTVSHLGYVKRVPLSVYRAQ-RRGGKGRSGVVMRDEDFVTDLFIV 583
                      E+  +  +H GYV+R+      ++ R        +V   +DF    ++ 
Sbjct: 525 TAILQPVAPAEEETFLEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLT 584

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT-----TIMPFPE 638
           +T  ++   +  G  Y   V  +P  S ++RG  LI +L  +  +         I+    
Sbjct: 585 NTGQNLAIITRTGKAYPLNVGDIPTTSNRSRGTPLITLLPSSVTKDPPMSLQELILAHFI 644

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
                +   ++  T+ G ++R  L++ + +   G   +KL  +DE+           ++L
Sbjct: 645 VAQHSDKTDLILVTQQGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQMIL 704

Query: 699 TTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            T  G+ +R P++  +    GR + G +   L K ++++S   V    +           
Sbjct: 705 ATSGGRVLRLPVNDEQLPPMGRTAQGSQVTRLRKQERLVSCLTVPPKAS----------- 753

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     +L VSE GF KR S    
Sbjct: 754 ------------------------------------------LLLVSELGFAKRISLDRV 771

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R + R   G +        +  AL  +  VN + +  L++ +  ++R  V+E+++ +   
Sbjct: 772 RSTTRGAIGTQLFQF--KGQKDALAGMVSVNSHQEAYLITSESRIVRFAVDEVKLQNEEA 829

Query: 878 KGVVIFSTAKDERVVSV 894
            G  +F     E ++ V
Sbjct: 830 TGNRLFKLNTGETIIGV 846



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 52/296 (17%)

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL---SDFI 666
                 ++   I S     + +      +  +       +  T  G VRR          
Sbjct: 501 PKAQPEQSSSRIRSGKPKSKGSQTTAILQPVAPAEEETFLEFTHRGYVRRLSAKTGDSKS 560

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +        +  DS D  +         ++ + T+ G+     +  I   + R S G   
Sbjct: 561 RSKADKSEIIVEDSDDFNVGSYLTNTGQNLAIITRTGKAYPLNVGDIPTTSNR-SRGTPL 619

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L                                          +T     S  E  ++
Sbjct: 620 ITL--------------------------------------LPSSVTKDPPMSLQELILA 641

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVF 845
                +   K   IL V+++G  KR S  +   ++NR   GI    +   +E+G      
Sbjct: 642 HFIVAQHSDKTDLIL-VTQQGKIKRLSLTELMDLTNR---GITIIKLKDQDELGY---AS 694

Query: 846 PVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
                +Q+IL +  G ++R+PVN+  +    R  +G  +    K ER+VS   +  
Sbjct: 695 LTRPGEQMILATSGGRVLRLPVNDEQLPPMGRTAQGSQVTRLRKQERLVSCLTVPP 750


>gi|288941703|ref|YP_003443943.1| DNA gyrase subunit A [Allochromatium vinosum DSM 180]
 gi|288897075|gb|ADC62911.1| DNA gyrase, A subunit [Allochromatium vinosum DSM 180]
          Length = 1386

 Score =  689 bits (1778), Expect = 0.0,   Method: Composition-based stats.
 Identities = 354/825 (42%), Positives = 476/825 (57%), Gaps = 84/825 (10%)

Query: 111  IEGQGNF----G-----SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
            ++   NF    G     SVDGDPPAA RYTE R+ + A  LLDDL K+TVDF PNYD + 
Sbjct: 614  VDHHHNFLLACGVFVHNSVDGDPPAAMRYTEVRMTRIADTLLDDLDKETVDFVPNYDNTE 673

Query: 162  QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
             EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+D C+A+IDNP + LD LMEI+ 
Sbjct: 674  HEPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLREVIDACLAIIDNPLVSLDELMEIVP 733

Query: 222  GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG-DREQIVVTEIPYQVNKAAM 280
            GPDFPT  +I G  GI+ AY TGRG  V+R  +  E      RE IV+TEIPYQVNKA +
Sbjct: 734  GPDFPTAGLINGVRGIREAYRTGRGRCVMRARATTETQKRSGREAIVITEIPYQVNKARL 793

Query: 281  LEKIAELVREKRIVDIA--DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            LE+IAELV+EK+I  IA   LRDESD+ G R+VIELKR   ++V+LN LY++T LQ +F 
Sbjct: 794  LERIAELVKEKKIEGIAQDGLRDESDKDGMRIVIELKRDTHSEVLLNNLYQHTQLQQVFG 853

Query: 339  VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            +NMVAL   +P    L  IL+ F+  R +VV RRT Y L KARDRAHVL G AIA+AN+D
Sbjct: 854  INMVALVDGQPLTLNLKQILEYFLRHRRDVVTRRTLYELRKARDRAHVLEGYAIALANID 913

Query: 399  EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLS 450
            EV+  I+ + NP  AR  LM+R W    +  +++                   D    LS
Sbjct: 914  EVIATIKAAANPAEARERLMERHWAPGAVTGMLERAGADRTRPEELEACFGLSDAGYRLS 973

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
            E Q +AIL+L+L RLTGL +D I  E   +   I   L ILS   RL+ +I++EL++V+D
Sbjct: 974  ERQAKAILDLQLHRLTGLEQDKILKEFEEILATIAALLLILSDPDRLMEVIREELIAVRD 1033

Query: 511  ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
            +    RRT I     D+  ED I  ED VVT+SH GYVK  P+S Y+AQ+RGGKG+S   
Sbjct: 1034 QFGDERRTEIQLDQTDLTLEDLIAPEDRVVTLSHQGYVKTQPISDYQAQKRGGKGKSATA 1093

Query: 571  MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +++EDF+  +F+ ++H +VL FSS G VY  KV+ LP     ARG+ ++N+L L  GERI
Sbjct: 1094 IKEEDFIDRIFVANSHDTVLCFSSRGRVYWLKVYELPQAGRGARGRPMVNLLPLEAGERI 1153

Query: 631  TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
            TT++P  + E   +  +V  AT  G V++  L DF +    G IA+ L   + ++     
Sbjct: 1154 TTLLPVRDYE---DGSFVFMATSAGTVKKTPLKDFSRPLSRGIIAIDLREDELLVGATIT 1210

Query: 691  TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              E D++L T  G+ VRF  S +R   GR + GVRG+ L +G +VI++            
Sbjct: 1211 GGEQDLMLFTSAGKAVRFSESHVRSM-GRAAHGVRGVMLQEGQRVIALVA---------- 1259

Query: 751  RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                             +L+V+E G+GK
Sbjct: 1260 -------------------------------------------PEDGGTVLSVTENGYGK 1276

Query: 811  RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            RT    F    R  +G+ A D ++ N  GA V    V+  D+I+L++D GTLIR  V++I
Sbjct: 1277 RTDVDQFPTKGRGTQGVIAIDTAERN--GAQVGAILVHPGDEIMLIADDGTLIRTSVDQI 1334

Query: 871  RIASRATKGVVIFSTAKDERVVSVERIRESEIVDE-----AESTE 910
             +  R TKGV + +  + +R+V VERI   E   E     AE +E
Sbjct: 1335 PVVGRNTKGVKLINLGEGQRLVFVERIAALEGDKETGEEAAEDSE 1379



 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 68/116 (58%), Positives = 89/116 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  K +  +++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M + G  WN+
Sbjct: 2   PDFAKEVLPINLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMHEQGNVWNR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            Y K AR+ G+VMGKYHPHG+AAIYD + RMAQ +SLR LL++GQGNFG   GD  
Sbjct: 62  AYRKSARVVGDVMGKYHPHGDAAIYDTMVRMAQPFSLRNLLVDGQGNFGCFTGDTA 117



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%)

Query: 533  IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                  V   +  G VK+ PL  +   R   +G   + +R+++ +    I      ++ F
Sbjct: 1162 YEDGSFVFMATSAGTVKKTPLKDF--SRPLSRGIIAIDLREDELLVGATITGGEQDLMLF 1219

Query: 593  SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            +S G   +     +      A     +  + L +G+R+  ++         +   V+  T
Sbjct: 1220 TSAGKAVRFSESHVRSMGRAA---HGVRGVMLQEGQRVIALVA------PEDGGTVLSVT 1270

Query: 653  KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFP 709
            ++G  +R  +  F    R  +  + +D+ +     +        ++I+L    G  +R  
Sbjct: 1271 ENGYGKRTDVDQFPTKGRGTQGVIAIDTAERNGAQVGAILVHPGDEIMLIADDGTLIRTS 1330

Query: 710  ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            +  I    GRN+ GV+ I+L +G +++ +  +   + D +      +   A
Sbjct: 1331 VDQI-PVVGRNTKGVKLINLGEGQRLVFVERIAALEGDKETGEEAAEDSEA 1380


>gi|311030251|ref|ZP_07708341.1| DNA topoisomerase IV subunit A [Bacillus sp. m3-13]
          Length = 814

 Score =  689 bits (1777), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/902 (33%), Positives = 469/902 (51%), Gaps = 94/902 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QTEKFHDLPLEEVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYAEGNVHDKPF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNMLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K TV+F PN+D + QEPVVL A YPN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSPIASELLRDLDKKTVEFIPNFDDTSQEPVVLPAMYPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  IDNP + +D LM +++GPDFPTG +I G  GIK AY TG+G I++R
Sbjct: 183 PHHLGEVIDATIMRIDNPSVTVDELMTVVKGPDFPTGGIIQGVEGIKKAYETGKGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G++ +E   G ++QIV+TE+PY+VNKA +++KI EL  +K++  I+++RDE+DR G RVV
Sbjct: 243 GLAEVEDIRGGKQQIVITEVPYEVNKANLVKKIDELRYDKKVDGISEVRDETDRTGLRVV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+ ILN LY+ T LQ  F+ NMVA+   +P    L   L A++  ++EV+  
Sbjct: 303 IELKKEADANGILNYLYKNTDLQITFNFNMVAIYKKRPTLMGLPHFLDAYIDHQKEVISN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ LN+A++R HV+ GL  A++ LDEV+  IR S +   A+  L+ +           
Sbjct: 363 RSRFELNRAKERQHVVEGLMKALSILDEVIATIRASKDKRHAKDNLIAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  ++ E   IL
Sbjct: 412 ---------------FTFTEPQAEAIVSLQLYRLTNTDITALQAEADELAKKVAELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  +L  +IK +L  VK      RR++I + +    +  E  I  ED++VTV+  GYVK
Sbjct: 457 GSEKKLFSVIKSDLKRVKKLYTNGRRSKIQDQIEEIKINLEVMIPSEDVIVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  + A            M++ D +     ++T  ++L F++ G      V  LP  
Sbjct: 517 RTSLRSFSASNG-----QDFGMKETDRIISKLDINTTQTLLLFTNKGNYLYLPVHELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+ +++ E I   +P    E   +  +++F T++G V++ +LS +    
Sbjct: 572 RWKDMGQHVANIVPIDRDESIIKAIPVSNFE---DPNFLLFVTRNGMVKKTELSAYKAQR 628

Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+ L   D+++ V       DI L T+ G  + F    I V   R + GV+GI+
Sbjct: 629 YSKPLMAVNLKGDDQVVDVHLTDGAQDIFLATRSGYGLWFTEEEINVVGARAA-GVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+S  +                                                
Sbjct: 688 LKDSDYVVSGLVFK---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                K  +  +   + +G  K+    +F  + R+ +G+      K N    + AV  V 
Sbjct: 702 -----KESKAMLFIATHRGAVKKLKITEFDKATRAKRGLVMLREVKNNPH-QIAAVELVE 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
            +  I + + KGT+ ++     R   R + G  +    +   VV +      E   E E 
Sbjct: 756 PSSFIYVQTVKGTVEKLAAASYRNNDRYSNGSFVLDQQEAGDVVEMWV----ETEVEVEG 811

Query: 909 TE 910
            E
Sbjct: 812 KE 813


>gi|315124516|ref|YP_004066520.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018238|gb|ADT66331.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 808

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 332/888 (37%), Positives = 512/888 (57%), Gaps = 123/888 (13%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS
Sbjct: 1   MQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG 
Sbjct: 61  IDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  
Sbjct: 121 SGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIE 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R  +HIEK   +++ I++ E+PYQ NKA ++E+IAELV+E++I  I+++
Sbjct: 181 AYRTGRGRVKVRAKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEV 239

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES+++G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L 
Sbjct: 240 RDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLN 299

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+  R+ V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ 
Sbjct: 300 LFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVA 359

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            LSE+Q  AIL+++L RLTGL R+ I NEL  
Sbjct: 360 K--------------------------FGLSELQANAILDMKLGRLTGLEREKIENELAE 393

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI    +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MV
Sbjct: 394 LMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMV 453

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y
Sbjct: 454 VTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLY 513

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV+++P GS   +GKA++N+++L   E+I  I+P  + +    +  + F TK+G V+R
Sbjct: 514 WLKVYKIPEGSRTVKGKAVVNLINLQAEEKIMAIIPTTDFD---ESKSLCFFTKNGIVKR 570

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND------------------------ 695
             LS++  I   G  A+ LD  DE+++     ++ D                        
Sbjct: 571 TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENL 630

Query: 696 ------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVL 742
                       +   TK G C++FP++ +R   GR S GV  I   +  D+++   ++ 
Sbjct: 631 ENEESVSTQGKMLFAVTKKGMCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIE 689

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           + +                                                    Q IL+
Sbjct: 690 NDE----------------------------------------------------QEILS 697

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +S KG GKRT++ ++R+ +R GKG+    +++  +   L++V  V++   ++ ++  G +
Sbjct: 698 ISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTK--DLISVVIVDETMDLMALTSSGKM 755

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           IRV +  IR A R T GV I    +++ VVS+ +  + E  ++  S E
Sbjct: 756 IRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIAKCPKEENDEDELSDE 802


>gi|157692486|ref|YP_001486948.1| DNA topoisomerase IV subunit A [Bacillus pumilus SAFR-032]
 gi|157681244|gb|ABV62388.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Bacillus pumilus
           SAFR-032]
          Length = 812

 Score =  688 bits (1776), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/897 (33%), Positives = 476/897 (53%), Gaps = 91/897 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QQERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+DG +  I+ P   ++ LM +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G R+QIV+TEIPY+VNKA +++K+ E   E+++  I+++RDE+DR G R+V
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A+ +LN LY+ + LQ  ++ NMVA++  +P   TL  IL A++A ++EVV  
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L KA++R H++ GL  A++ LDEV+  IR S +   A+  LM++           
Sbjct: 363 RSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMEK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +R+E N L + I E  DIL
Sbjct: 412 ---------------YDFTEAQSEAIVSLQLYRLTNTDITQLRDEANELDVRIAELEDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            +  +LL +I   L  +K      RR+        + +  E  I  ED+ VTV+  GY+K
Sbjct: 457 GNEKKLLKVITNSLKKLKKTYADDRRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A            M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSYAASNGKD-----FGMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+S+++ E I   +P  E +      Y++F TK G V++ KL  +    
Sbjct: 572 RWKDMGQHITNIISIDRDESIQKAIPIKEFD---ETSYLLFFTKGGMVKKTKLLQYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V   T + ++ + TK G  + F    +    G  + GV+GI+
Sbjct: 629 YSKPLVALNLKGDDELVDVHVTTGQQELFIATKNGYGLWFDEEEV-SVVGPRAAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+S  I+                                               
Sbjct: 688 LKDGDEVVSGQIINP--------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +LT +++G  KR +  +F  ++R+ +G+      K N    +V+V   +
Sbjct: 703 ------KNDVLVLT-TQRGAVKRMNLSEFDKTSRAKRGVLMLRELKKNPH-RIVSVIAAS 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +D + + ++KG  I + ++ +R   R + G  I    +   V  V    +    D 
Sbjct: 755 LHDTLEIDTEKGATIPLDISTLRANDRYSNGSFIVDEEEQGEVTHVLVAPQPAPDDN 811


>gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
 gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor]
          Length = 845

 Score =  688 bits (1775), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/776 (40%), Positives = 461/776 (59%), Gaps = 35/776 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  V +  E   +Y++YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 93  KERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 152

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG+ A+Y++L RMAQD+S+R  L++G GNFGSVD DPPAA RYTE
Sbjct: 153 KCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYTE 212

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL   A  + L DL  +TVDF PN+D S +EP +L AR P++L+NG  GIAVGMATNIP
Sbjct: 213 CRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIP 272

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VD    +I NP+  L  L+E + GPDFPTG  ILG  GI  AY +GRG IV+R
Sbjct: 273 PHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTILGNQGILEAYKSGRGRIVVR 332

Query: 252 GVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           G + IE       R  I++ EIPYQ NKA +++KIAEL  +K +  I+D+RDESDR G R
Sbjct: 333 GKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTGMR 392

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVIELKR A   ++LN LYR+T+LQS FS NMVA+   +P+   L  IL+AF+ FR  V+
Sbjct: 393 VVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQPKLMGLKEILQAFLDFRCSVI 452

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR +Y L++A +R H++ G+ I + NLD V+++IR + N   A   L++          
Sbjct: 453 ERRARYKLSQALERKHIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKE--------- 503

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q  A+L++ L RLT L R    +E   L  EI +  +
Sbjct: 504 -----------------FDLSEKQAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNE 546

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           +LSS+  +  +I+QE   +K++  TPRR+ I + +     + +     E ++  +S  GY
Sbjct: 547 LLSSKELIFQLIQQEAADLKNKFSTPRRSLIDDSVSCEVDDIDIIPNEEMLLKILSEKGY 606

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY  + +++P
Sbjct: 607 AKRMNPNTFSLQHRGTIGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIP 666

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +  A G  L+ +L L+ GERIT+I+P  E      +  +V  T +G +++  L+ F  
Sbjct: 667 ECTRTATGTPLVQLLPLSDGERITSIIPVSEFG---EDQCLVMLTVNGYIKKVPLNAFSS 723

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G I+++L   DE+  V  C  ++ + L ++ G+ +      +R   GRN+ GV  +
Sbjct: 724 IRSTGIISIQLVPGDELKWVRRCGNDDLVALASQKGRVIVNSCDKLRAL-GRNTRGVYAM 782

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            L +GD++ +M I+        E+I      S +RR     ++   S +       
Sbjct: 783 KLKEGDKMAAMDIIPATAHKMPEKIDRRPRRSPRRRSPWRRSQHRRSQRQRRQASA 838



 Score = 81.0 bits (198), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 85/267 (31%), Gaps = 61/267 (22%)

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETCTQENDI 696
           D      + +   ++ G  +R   + F        GK   K+   D       C   + +
Sbjct: 589 DIIPNEEMLLKILSEKGYAKRMNPNTFSLQHRGTIGKSVGKMRLNDSTSDFIVCQTHDHV 648

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERIC 753
           L  +  G         I     R + G   V+ + L+ G+++ S+  V            
Sbjct: 649 LYFSDKGIVYSARAYKIPECT-RTATGTPLVQLLPLSDGERITSIIPVSEFG-------- 699

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                     ++Q ++ ++  G+ K+  
Sbjct: 700 ------------------------------------------EDQCLVMLTVNGYIKKVP 717

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              F    RS  GI +  +        L  V    ++D + L S KG +I    +++R  
Sbjct: 718 LNAFSSI-RST-GIISIQLVPG---DELKWVRRCGNDDLVALASQKGRVIVNSCDKLRAL 772

Query: 874 SRATKGVVIFSTAKDERVVSVERIRES 900
            R T+GV      + +++ +++ I  +
Sbjct: 773 GRNTRGVYAMKLKEGDKMAAMDIIPAT 799


>gi|158338824|ref|YP_001520001.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
 gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017]
          Length = 824

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/900 (34%), Positives = 466/900 (51%), Gaps = 91/900 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + + ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 9   SSGKVIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYT 128

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL       LL+++G+ TV+F  N+D S QEP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 129 ETRLSPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD  VA+ID+PD+ L+ LM ++ GPDFPTG  I+G+ GI +AY  GRGSI +
Sbjct: 189 PPHNLGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIVGKQGIIDAYTNGRGSITV 248

Query: 251 RGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           R V+ IE+    R +     I+VTE+PYQVNKA  +EKIA L+ + RI  IADLRDESDR
Sbjct: 249 RAVTSIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRDESDR 308

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIELKR A    +L QLYR T LQS F V M+AL    P + +L  +L+ F+ FR
Sbjct: 309 EGMRIVIELKREAQPPAVLEQLYRLTPLQSNFGVIMLALVNGVPLQLSLKEVLQKFLDFR 368

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           E+ + RR +  L +A+ R H++ GL  A+ +LD+++ I+R +P+  TA+           
Sbjct: 369 EQTLTRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAK----------- 417

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                          +       LS  Q  AIL + + RLTGL + ++R E + L  EI 
Sbjct: 418 ---------------VQLKSQFQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIG 462

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   +L +R  LL  +K++L ++K +   PRRT I       E     V ++ V+   + 
Sbjct: 463 DLERLLGNRHELLKALKKDLRALKKQYSDPRRTVIHGAAAKTEIFAAPVSDESVIVELNQ 522

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
               R      R             +  +            T +L F+  G  Y   +  
Sbjct: 523 RGYARCMRVSKRKNNAPDLSGELADVSTDL-TIFRHTTELTTDLLLFTGSGKAYGVGLQS 581

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P  S + +GK L+ +L      R   I+         +   ++  ++ G ++R  +S+F
Sbjct: 582 IPFTSSKGKGKPLVTLLP--DSGRDDEIIARFLSTEISDTSQLILLSQQGKIKRLPMSEF 639

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            ++   G  A K+ S D++  V    QE ++ + T  G+ +  PI+ I    GR + G +
Sbjct: 640 AEMTSRGLGAAKIKSGDQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEM-GRTAQGNQ 698

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              L K + ++ +A V                                            
Sbjct: 699 VFRLRKQESIVGLAAVRDDAD--------------------------------------- 719

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                         +L +S KG+ KR      R+      G +A       +   L+A+ 
Sbjct: 720 --------------LLLISSKGYCKRLPIDLLRLGKVGDLGTQAMQFMI--KSDGLIALL 763

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           P N N  +I++S++    R+ +  + +  +   G  +  T + E + +   I +++   E
Sbjct: 764 PANPNQDVIVLSNQERAARLNIETLPMWGQDGPGTQLLKTKRGEVLENTVVIPKADTEKE 823


>gi|194014901|ref|ZP_03053518.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
 gi|194013927|gb|EDW23492.1| DNA topoisomerase IV, A subunit [Bacillus pumilus ATCC 7061]
          Length = 812

 Score =  687 bits (1773), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/897 (33%), Positives = 475/897 (52%), Gaps = 91/897 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +++    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QQERFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYAEGNTQDKNF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAIASELLKDLDKETVEFVANFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+DG +  I+ P   ++ LM +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDGVIKRIEQPHCTVEDLMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIMIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G R+QIV+TEIPY+VNKA +++K+ E   E+++  I+++RDE+DR G R+V
Sbjct: 243 GKAEIETIRGGRQQIVITEIPYEVNKANLVKKMDEFRIERKVEGISEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A+ +LN LY+ + LQ  ++ NMVA++  +P   TL  IL A++A ++EVV  
Sbjct: 303 VELKKEADANGVLNFLYKNSDLQIPYNFNMVAIHNRRPTLMTLTTILDAYIAHQKEVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ Y L KA++R H++ GL  A++ LDEV+  IR S +   A+  LM +           
Sbjct: 363 RSAYELRKAKERHHIVDGLIKALSILDEVIATIRSSNDKRDAKNNLMDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +R+E + L + I E  DIL
Sbjct: 412 ---------------YDFTEAQSEAIVSLQLYRLTNTDITQLRDEASELDVRIAELEDIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            +  +LL +I   L  +K      RR+        + +  E  I  ED+ VTV+  GY+K
Sbjct: 457 GNEKKLLKVITNSLKKLKKTYADERRSVIEEKIEEIKINLEVMIASEDVYVTVTKDGYIK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A            M+D D +   F ++T   +L F++ G      V +LP  
Sbjct: 517 RTSQRSYAASNGKD-----FGMKDTDRLIHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+S+++ E I   +P  E +      Y++F TK G V++ +L  +    
Sbjct: 572 RWKDMGQHITNIISIDRDESIQKAIPIKEFD---ETSYLLFFTKGGMVKKTELLQYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V   T + ++ + TK G  + F    +    G  + GV+GI+
Sbjct: 629 YSKPLVALNLKGNDELVDVHVTTGQQELFIATKNGYGLWFDEEEV-SVVGPRAAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD+V+S  I+                                               
Sbjct: 688 LKDGDEVVSGQIIDP--------------------------------------------- 702

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +  +LT +++G  KR +  +F  ++R+ +G+      K N    +VAV   +
Sbjct: 703 ------KNDVLVLT-TQRGAVKRMNLSEFDKTSRAKRGVLMLRELKKNPH-RIVAVIAAS 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
            +D + + ++KG  I + ++ +R   R + G  I    +   V  V    +    D 
Sbjct: 755 LHDTLEMDTEKGATIPLDISTLRANDRYSNGSFIVDEEEQGEVTHVLVTPQPAPDDN 811


>gi|172039454|ref|YP_001805955.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142]
 gi|171700908|gb|ACB53889.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142]
          Length = 846

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/906 (32%), Positives = 456/906 (50%), Gaps = 112/906 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT  ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 20  EITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 80  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 139

Query: 135 LQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A   +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 140 LSPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDNP++  + L +II GPDFPTG  I+   GI++AY  G+G I +RGV
Sbjct: 200 NLGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIPTQGIEDAYRHGKGIISVRGV 259

Query: 254 SHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IE+          R  I+VTE+PYQV K+  +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 260 VRIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLEGIADIRDESDRSG 319

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE 
Sbjct: 320 MRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREH 379

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  Y L + R+R H+L GL IA+ NLD ++ I+R + +  TA+ +  Q        
Sbjct: 380 TLTRQYNYELEECRNRLHLLEGLLIALNNLDRIIDILRNAADGTTAKTQFQQE------- 432

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + LSE Q   IL + + RLTGL R  ++ E + L   I E 
Sbjct: 433 -------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELQGRINEL 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED-------EDCIVREDMVV 540
            ++L++R   L ++K+EL S+K +    RRTRIV+              +     ++   
Sbjct: 474 ENLLNNRPEFLKVLKKELRSLKRKYGDERRTRIVQPTAQKSQSKATQTAKKQSSDQNKTT 533

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL----- 595
           ++S+               +   K     +                 + +   S      
Sbjct: 534 SISNREPDTTSQPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVPIYSEPIQER 593

Query: 596 ---------GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
                    G  Y   V  +P    Q     L+++L  +       ++       +  N 
Sbjct: 594 EQFIVITDIGKAYPVNVADVPPIEIQ--PIPLLSLLPKSAQRDSKKVVSLFFLSDNTENK 651

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  T  G ++R +LS+   +   G + +KL  +D + SV    +  ++ +    G+ +
Sbjct: 652 DLLLLTNQGKIKRIQLSELAGLTNRGLVLIKLKDQDGLESVSITKEGEEVAIAMSSGRVL 711

Query: 707 RFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RFP +  +    GRN+ G + + L  G+ +I    +                        
Sbjct: 712 RFPVVDEVIPIMGRNAQGNQALKLRYGETIIGCVTLDD---------------------- 749

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                           + +L VS+ G+GKR +    R++     
Sbjct: 750 -------------------------------NKIVLLVSKLGYGKRLNVTGLRMTKLGDI 778

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G +A   +  N   +L+ +   +D+  I L++++   + +   +++I  +  +G  +   
Sbjct: 779 GTQALQFTHKN--DSLLGMIRASDSKDITLLTNQKKTLNIVAKDVKIWGKDGQGDRLVKL 836

Query: 886 AKDERV 891
           +  E +
Sbjct: 837 SNQEVI 842



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/129 (14%), Positives = 48/129 (37%), Gaps = 9/129 (6%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVS 833
            K+       +          + + +L ++ +G  KR    +   ++NR   G+    + 
Sbjct: 628 PKSAQRDSKKVVSLFFLSDNTENKDLLLLTNQGKIKRIQLSELAGLTNR---GLVLIKLK 684

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERV 891
             +    L +V    + +++ +    G ++R PV +  I I  R  +G         E +
Sbjct: 685 DQDG---LESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALKLRYGETI 741

Query: 892 VSVERIRES 900
           +    + ++
Sbjct: 742 IGCVTLDDN 750


>gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642]
 gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642]
          Length = 775

 Score =  687 bits (1772), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/812 (37%), Positives = 455/812 (56%), Gaps = 51/812 (6%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  N+ Y K ARI G
Sbjct: 6   EIAEEIKTSYLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVG 65

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+AA+Y+AL RMAQD+++R  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 66  DVLGKYHPHGDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIA 125

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L D+ KDTVDF PN+D + +EP VL A +PN+L NG  GIAVGMATNIP HNL E+ 
Sbjct: 126 EEMLKDIDKDTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREIC 185

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  V  I NPD+ +  LM+ ++GPDFPTG +I+G  GI  AY TGRG I++RG    E  
Sbjct: 186 DAIVEYIRNPDVTVRELMKHVKGPDFPTGGIIVGVEGIIKAYETGRGRIILRGKVEFED- 244

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 I++ E+PY V K+ ++EKIA LV+E ++ ++  +RDESDR+G RVV+ELK G  
Sbjct: 245 ----NAIIIREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKSGVD 300

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            +++L +LY YT LQ  +S+ ++AL   +P+  TL  ++  +V  R EVV RRT Y L K
Sbjct: 301 KNLVLKKLYLYTPLQITYSIMLLALVNTQPKILTLKDLIAEYVNHRREVVRRRTAYELEK 360

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           A +R HVL G  I ++NLDE + +IR S +P  A+ +L+ R                   
Sbjct: 361 AEERIHVLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINR------------------- 401

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    LSE Q  A+L++RL +LT +  D I  E   L  +IKE   ILSS+ ++  
Sbjct: 402 -------FSLSEKQADAVLQMRLQKLTSMEIDGILKEYEELDKKIKELKSILSSQEKMDE 454

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           II +EL  +K      RRT+IVE   ++ + D I  E+ V+ ++  GY KR+  S +R Q
Sbjct: 455 IIIKELEEIKKNYGDDRRTKIVEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRVQ 514

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGG G SG+ +RD D+   +  V +   +L F+  G  +    + +P      +G +L 
Sbjct: 515 RRGGVGTSGISLRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLK 574

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
             L +                  +    VV  T+ G +++  +++F    RSG +A    
Sbjct: 575 RFLRIEDEI---------VGIVPFGKGSVVILTESGYIKKVNIAEFENAKRSGILASP-- 623

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              E ++        ++++ T+ G+ VRF    +  +  RN+ GV+ +SL  GD++  M 
Sbjct: 624 ---ESVAFVKKLDGKEVIIATENGRLVRFKAEEVPEYK-RNARGVKAVSL-DGDKIAWMD 678

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +             Y K    +   ++G   +  +    +   G +          K   
Sbjct: 679 VGSEDLILTLTENGYGKMTKTEEFRLTGRGAKGVTAHKVNEKTGKLVFAEFV----KSDK 734

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           ++ +S+ G      +    +  R+  G+  + 
Sbjct: 735 LMVISKDGNVIVVETKQIPVMGRNAVGVAVSK 766



 Score =  127 bits (319), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 114/318 (35%), Gaps = 48/318 (15%)

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG--KIAMK 677
           N     + + +       E ++  +   V+  TK G  +R   SDF    R G     + 
Sbjct: 466 NYGDDRRTKIVEKYEEITEVDTIKDEENVLIITKDGYAKRLDESDFRVQRRGGVGTSGIS 525

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS-LAKGDQVI 736
           L   D    +      + ILL TK G+        I     R+  GV     L   D+++
Sbjct: 526 LRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEI-PKQERSGKGVSLKRFLRIEDEIV 584

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL- 795
            +               Y+K ++      +  +  + S ++ + V+    +E     +  
Sbjct: 585 GIVPFGKGSVVILTESGYIKKVNIAEFENAKRSGILASPESVAFVKKLDGKEVIIATENG 644

Query: 796 ------------------------------------KEQFILTVSEKGFGKRTSSYDFRI 819
                                                E  ILT++E G+GK T + +FR+
Sbjct: 645 RLVRFKAEEVPEYKRNARGVKAVSLDGDKIAWMDVGSEDLILTLTENGYGKMTKTEEFRL 704

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           + R  KG+ A  V++  + G LV    V  +D+++++S  G +I V   +I +  R   G
Sbjct: 705 TGRGAKGVTAHKVNE--KTGKLVFAEFVK-SDKLMVISKDGNVIVVETKQIPVMGRNAVG 761

Query: 880 VVIFSTAKDERVVSVERI 897
           V +        ++S   I
Sbjct: 762 VAVSKKG----IISASFI 775



 Score = 94.9 bits (234), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 15/218 (6%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           EI  V+T   E ++L+ TK G   R   S  RV   R  VG  GISL  GD     A ++
Sbjct: 481 EITEVDTIKDEENVLIITKDGYAKRLDESDFRV-QRRGGVGTSGISLRDGDY---AAYIV 536

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
              +     +      +          +E +           I +E    +   +  ++ 
Sbjct: 537 KVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKRFLRIEDEIVGIVPFGKGSVVI 596

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           ++E G+ K+ +  +F  + R   GI A+  S        VA     D  ++I+ ++ G L
Sbjct: 597 LTESGYIKKVNIAEFENAKR--SGILASPES--------VAFVKKLDGKEVIIATENGRL 646

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +R    E+    R  +GV   S    +++  ++   E 
Sbjct: 647 VRFKAEEVPEYKRNARGVKAVSLD-GDKIAWMDVGSED 683


>gi|317128926|ref|YP_004095208.1| DNA topoisomerase IV, subunit alpha [Bacillus cellulosilyticus DSM
           2522]
 gi|315473874|gb|ADU30477.1| DNA topoisomerase IV, A subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 834

 Score =  686 bits (1770), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/905 (33%), Positives = 472/905 (52%), Gaps = 94/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E++    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   QEKERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ R +QDW +R LL++  GN GS+DGDPPAA RY
Sbjct: 62  FRKAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ KDTVDF  N+D S +EPVVL +R+PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  +++PD  +D LM+ I+GPDFPTG  I G  G+K AY TG+G IV+
Sbjct: 182 PPHHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTIQGVDGLKKAYETGKGKIVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE   G ++QIV+TEIPY+VNKA +++++ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RGKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A +  IL+ LY+ T LQ  ++ NMVA+    P+   L  +L+A++  ++EVV 
Sbjct: 302 VVELKKEADSKGILHYLYKNTDLQVSYNFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ LNKA++RAH++ GL  A++ LDEV++ IR S + + A+  L             
Sbjct: 362 RRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRL------------- 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      +  E + L   I++   I
Sbjct: 409 -------------QDMYQFTEPQAEAIVTLQLYRLTNTDVTTLEEEASELKKLIEKLEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           LSS   L+  IK+EL  +K +    RRT I + + D  +  E  I  ED+ VTV+  GYV
Sbjct: 456 LSSEKNLINEIKRELKEIKKKYAEARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A            M++ D +     ++T  ++L F+  G      V +LP 
Sbjct: 516 KRSSLRSYAASNGEPP-----GMKETDRLLYSLEINTTDTLLLFTRKGSFLFLPVHQLPE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + N+++++  + I T +P  E     ++ YV+FATK G V++  LS++   
Sbjct: 571 IRWKDSGQHVANLVAMDNDDDILTAIPVKEFN---DSEYVLFATKLGMVKKTVLSEYKAQ 627

Query: 669 NRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S   +A+KL   DE++SV      +DI   T  G  + F    +     R + GV+ I
Sbjct: 628 RNSKALMAVKLKKDDEVISVTLSDGTHDIFFATHTGYGLWFTEEEVSATGQRTA-GVKAI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D V+S                                                  
Sbjct: 687 NLKKDDFVVSCM------------------------------------------------ 698

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                 +     +  V+++   K+     F  ++R+ +G+      K      + ++ P+
Sbjct: 699 ---SFKEESPPDLFLVTQRAAYKKMKLNVFEKTSRAKRGLVMLKELKRYPH-RVASLLPI 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER----IRESEIV 903
                I + +  G    + V  IR   R T G  +F T     V+ V         +++ 
Sbjct: 755 TKYGSIFVQTKNGNTDTIEVASIRSNDRYTNGSFLFDTGDTGEVIDVWFEEGDAPNTDLD 814

Query: 904 DEAES 908
           DE  S
Sbjct: 815 DEGSS 819


>gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
 gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1]
          Length = 981

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 316/908 (34%), Positives = 469/908 (51%), Gaps = 115/908 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  V I  EMQ SYL YA++VI+ RA+PD RDGLKPV RRIL+ M  MG+  +  Y K A
Sbjct: 6   VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI GEV+GKYHPHG+ A+Y+A+AR+AQD+++R  L++GQGNFGS+DGDPPAA RYTE RL
Sbjct: 66  RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL  + ++TVDF  N+DG+ +EP VL A  PN+LVNG  GIAVGMATNIP HNL
Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185

Query: 196 GEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRT---GIKNAYATGRGSI 248
            EVVD    ++D      +I +  LM  I+GPDFPTG ++L      G+  AY +G+G I
Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IRG  H E     R ++++TE+PYQ NK +++E+IAELVRE  +  I+DLRDESDRQG 
Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+GA  +  +  LY  T LQS F + ++AL   +P   TL   L+ F+  R  V
Sbjct: 306 RIVIELKQGAEVETTIRTLYHRTPLQSTFGIILLALVDGEPRLLTLKQALRVFLEHRIVV 365

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR++Y L +AR RAH+L GL +A+ NLDEV+++IR +P+ E AR  LM+R        
Sbjct: 366 VRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKR-------- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q +AIL+++L RL  L R  I  E   +  +IK   
Sbjct: 418 ------------------FKLSEIQAQAILDMQLRRLASLERKKIEEEYREVTAQIKALE 459

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE------GLLDMEDEDCIVREDMVVTV 542
            +L+S  ++   +K+ELL +K++    RRT+IV           +  ++    + + V V
Sbjct: 460 SLLASAKKIRLAVKEELLKMKEQYGDRRRTQIVTLEGETAIHQFLTADEMAPADKVWVGV 519

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
              G V R       A                         ST   ++  ++ G      
Sbjct: 520 MADGRVGRTAGEGLPATPA----------------LHCLRASTRAVLILANAQGQASALS 563

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP+      G  L    +L++G+R+   +    D+    + Y++  T++  V+++ L
Sbjct: 564 VGALPVVERWQDGMPLHKASALSEGDRVVLALALEPDDPKT-DRYLLTVTRNALVKKSSL 622

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            +    +      +K++  DE+L+      ++++LL T  G  +RF  S +R   G  + 
Sbjct: 623 EELPGPSAQKFTLVKVNPEDELLTGVVTEGQDEVLLLTAGGMAIRFSESEVRPM-GLVAA 681

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV G+ L +GDQV  + +                                          
Sbjct: 682 GVLGMKLTEGDQVSGLVLNPQEKD------------------------------------ 705

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            IL     G   R +  DF +  R G+G+ AT VS       +V
Sbjct: 706 -----------------ILFACSDGTTGRIAGADFPLQGRYGQGVLATRVS---RGAEVV 745

Query: 843 AVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               V    +++L +S +  L+ VPV+EI    R  KG  +      + ++++  +   E
Sbjct: 746 GALGVQHQKEVLLHLSSQDVLV-VPVSEIHRIKRGNKGTRLKLATPGKEILALTWMPAIE 804

Query: 902 IVDEAEST 909
              + E +
Sbjct: 805 TPTKPEGS 812


>gi|15614702|ref|NP_243005.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
 gi|10174758|dbj|BAB05858.1| DNA topoisomerase IV subunit A [Bacillus halodurans C-125]
          Length = 816

 Score =  684 bits (1764), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/901 (32%), Positives = 484/901 (53%), Gaps = 91/901 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G   +K +
Sbjct: 3   QTERYLDLPLEEVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKPF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+Q+W +R +L++  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNILVDMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL D+ K+TVD+ PN+D S QEPVVL A++PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSKIAAELLRDIDKETVDYIPNFDDSEQEPVVLPAKFPNLLVNGSTGISSGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+DG +  ++NP++ LD LM++I+GPDFPTG ++ G  GI+ AY+TG+G +V+R
Sbjct: 183 PHHLGEVIDGVIMQMENPNVTLDELMQVIKGPDFPTGGIVQGIEGIRQAYSTGKGKVVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G ++QIV+TEIPY+V KA +++K+ E+  +K++  IA++RD++DR G R+V
Sbjct: 243 GKAEIEDLRGGKQQIVITEIPYEVVKANLVKKMDEIRFDKKVDGIAEVRDDTDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A A+ IL  L++ T LQ  ++ NMVA++   P    L  +++A++  +++V++R
Sbjct: 303 VELKKDADANGILQYLFKNTDLQITYNFNMVAIHNKTPRLMGLKSLIQAYIDHQKDVIIR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L KA+DR H++ GL  A++ LD+V++ IR S + + A+  L+ +           
Sbjct: 363 RATYDLQKAKDRQHIVQGLMKAISILDDVIQTIRASKDKKNAKDNLIAQ----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      +  E   L   I E   IL
Sbjct: 412 ---------------FDFTEAQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  +L+G++K+ELL++K +    RRT  +     + +  +  +  ED++VTV+  GYVK
Sbjct: 457 ASEKKLIGVVKKELLAIKKQFTDERRTIIKKEIEEIKITMDVLVASEDVMVTVTKEGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A            M++ D++   + ++T  ++L F+  G      V +LP  
Sbjct: 517 RTSLRSYAASNGELP-----GMKEGDYLLGRYEMNTQDTLLLFTKKGNYLYLPVHQLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++++++ + I T +   E         ++F T+ G  +R++LS +    
Sbjct: 572 RWKDNGQHVANLVTVDKDDDILTTLAVKEFS---EEESLLFITRQGMAKRSQLSLYKAQR 628

Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+KL   DE++SV   +   ++ + T  G  + F  + I    G+ + GV+GI+
Sbjct: 629 FSKPLMALKLKDDDEVVSVMRTSGNEEVFIATSFGYGLWFSENEI-SQVGQRAAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+        D                                           
Sbjct: 688 LKNDDAVVDATTFTLNDRVEF--------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L V+ +G  KR S  +F  S R+ +G+      K N    +VA   ++
Sbjct: 709 ------------LVVTHRGGVKRISITEFDKSTRAKRGLVMLRELKKNPH-HIVACKRIS 755

Query: 849 DN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           D  D   + ++ GT++ V  +  R + R + G  +    K   V +V +        E E
Sbjct: 756 DGSDTFFIKTEDGTIVTVAPSSFRRSDRYSNGSFVLDQDKTGVVTNVWKEVSLIDDKEGE 815

Query: 908 S 908
           S
Sbjct: 816 S 816


>gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
 gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506]
          Length = 868

 Score =  683 bits (1763), Expect = 0.0,   Method: Composition-based stats.
 Identities = 309/938 (32%), Positives = 459/938 (48%), Gaps = 139/938 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 11  QVISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL RM Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 130

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    H  +L  +G+ TVDF  N+D S QEP VL A  P +L+NG  GIAVGMATNIP H
Sbjct: 131 LASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIAVGMATNIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVDG +A+ID PD+  + L+ +I GPDFPTG  I+   GI +AY  G+GSI +RGV
Sbjct: 191 NLNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEIISTEGITDAYTKGKGSIAVRGV 250

Query: 254 SHIEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + +E+      +  +  IVVTE P+QVNKA  +EK+AELV + RI  I+DLRDESDR+G 
Sbjct: 251 TRMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGISDLRDESDREGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIE+KR  S   +L++LY  T LQ  F   ++AL   +P + TL  +L+ F+ FRE  
Sbjct: 311 RVVIEIKREFSPQTVLSRLYHQTDLQCNFGAILLALVNGQPRQLTLRQMLQEFLNFREVT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR  + L  A  R H++ GL + + NLD  + I+R +P+  TA++ L  R        
Sbjct: 371 LTRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQGLQSR-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  SE Q  AIL + + RLTGL R +++ E + L   I+E  
Sbjct: 423 ------------------LNFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQ 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL----------------------- 525
            +L  R  LL  +K+EL S+K +   PRRTR+V                           
Sbjct: 465 RLLGDRRELLKALKKELRSLKRKYGDPRRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEG 524

Query: 526 ---------------------DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                                 +        E  V+  +H  YV+R+  +     +   K
Sbjct: 525 RGSRGAGEQRGGEGKKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDK 584

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL-- 622
                    + F  +     T+ ++   +  G  Y  K+  +P    + RG  +I++L  
Sbjct: 585 SAQSRGGESD-FSVNTIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTPIISLLSP 643

Query: 623 ----SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                +  G     +        + +   +V  T+ G ++R  LS+   I   G  A+KL
Sbjct: 644 SATKDVAPGNLPEIVAGMFVLSENADATDLVTLTQQGKIKRLPLSELSDITNRGVTAVKL 703

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVIS 737
              DE+           ++L T  G+ +RF ++  +    GR + G +   L K +Q++ 
Sbjct: 704 KDDDELRYAMLSKPGEQVVLATSGGRLLRFELNDEQLPPMGRAAQGSQATRLRKQEQLVG 763

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              +                                                       +
Sbjct: 764 CITL-----------------------------------------------------AAD 770

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             +L VSE G+ KR      R++ R   G +A   ++     ALV +       ++ L++
Sbjct: 771 GSLLLVSELGWAKRMPVGSVRLTGRGEIGTQAFHFAE--PKDALVGIVAALPRKELKLLT 828

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + G L+RV V +I    +   G    +    E++V V 
Sbjct: 829 NNGRLLRVGVEKIAFWGKDAPGDRAVNLNPSEKIVKVV 866


>gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 817

 Score =  683 bits (1761), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/888 (34%), Positives = 468/888 (52%), Gaps = 82/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +      + + + + +  Y+  +I  RAIPD+RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 3   EQFMPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G+VMG YHPHG+A+IY+ + RMAQ W +  +LI+G GN+GS D DP AA RYTE 
Sbjct: 63  SAKTVGDVMGNYHPHGDASIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A  LL D+ K TV F+ N+D + +EPVVL +R+PN+LVNG  GI+ G AT IPTH
Sbjct: 123 RLSEIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D CVA++D P++ ++ LM II+GPDFPTG +I+G  GIK+AY +G+G I +R  
Sbjct: 183 NLREVIDACVAMMDQPEMTVEQLMGIIKGPDFPTGGIIMGEEGIKDAYTSGKGRIYVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G R+QI+VTEIPYQV K+ ++  I  +  +K++  I+++RDES R G R+V++
Sbjct: 243 TSIESVRGGRQQIIVTEIPYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVD 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  IL  L + T LQ  ++ NMVA+    P++  +  +L+A++  +++VV+ RT
Sbjct: 303 LKKDADAQGILAYLLKKTDLQVTYNFNMVAIVNKTPKQLGIREMLQAYIDHQKDVVIHRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA DRAHVL GL  A+  LDE++  I+ S N + A+  L+++             
Sbjct: 363 QYDLEKAEDRAHVLEGLVKALNILDEIIETIKASKNRQDAQNNLVEK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AIL L+L RLT L    +  ELN +  +I     IL S
Sbjct: 410 -------------YAFTERQADAILTLQLYRLTNLEVTSLEKELNDIMKKITHLCSILES 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
             +L  +IK+E++ ++D+    RR+ I   +    +  E  +  ED++VT+S  GY+KRV
Sbjct: 457 PKKLANVIKKEMIEIRDKYGIDRRSEIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRV 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y    R G       +++ DFV  L  V+T  S+L F++ G  +   V ++P    
Sbjct: 517 SILSY---TRSGGELHTTGLKEGDFVRHLLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G A++N++ +++ +RI  ++P    E   +   +VF TK G V+R +L +++    +
Sbjct: 574 KDNGTAIVNVIPMSKEDRIVNVIPVKNFE--ESGKSLVFVTKKGQVKRTELKEYMTKRST 631

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
             +A K+   DE++ VE      D+LL TK G  +RF    +    GR + GVRGI L  
Sbjct: 632 AVVACKVGDGDEVIQVEVSESNKDLLLVTKQGMSIRFREDEVNPM-GRAAGGVRGIQLKD 690

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD+VIS   +   + +                              D             
Sbjct: 691 GDEVISAEWIFGDEGELLVIS-------------------------DRGYAKRTLVFDYP 725

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 + ILT  E   GKR                        +    L+A F V  + 
Sbjct: 726 LQARGGKGILTF-EFKEGKRV----------------------RSNGTELIASFLVKMDY 762

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            I    + G  +     +  +  R   G V+    + + +  ++R+ E
Sbjct: 763 DITAYLNNGEQVIFSTEKAPLDDRKATGKVVIPVGRTDSITHIQRMPE 810



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 57/272 (20%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  ++ G ++R  +  + +          L   D +  +      
Sbjct: 490 LKVNLEVMVTPEDVLVTLSQDGYIKRVSILSYTRSGGELHTT-GLKEGDFVRHLLEVNTI 548

Query: 694 NDILLTTKLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           + +L+ T  GQ    P+  I    +    +  V  I ++K D+++++  V + +      
Sbjct: 549 DSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDRIVNVIPVKNFE------ 602

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                         + ++ V++KG  KR
Sbjct: 603 -------------------------------------------ESGKSLVFVTKKGQVKR 619

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T   ++ ++ RS   + A  V        ++ V     N  ++LV+ +G  IR   +E+ 
Sbjct: 620 TELKEY-MTKRSTA-VVACKVGDG---DEVIQVEVSESNKDLLLVTKQGMSIRFREDEVN 674

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              RA  GV        + V+S E I   E  
Sbjct: 675 PMGRAAGGVRGIQLKDGDEVISAEWIFGDEGE 706



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           ++ +I    +     +++   E    +   + +   E  ++T+S+ G+ KR S   +  S
Sbjct: 465 KKEMIEIRDKYGIDRRSEIQGEVEELKVNLEVMVTPEDVLVTLSQDGYIKRVSILSYTRS 524

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG- 879
              G+       + + E   +  +  VN  D +++ +++G    +PV++I        G 
Sbjct: 525 --GGE----LHTTGLKEGDFVRHLLEVNTIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGT 578

Query: 880 --VVIFSTAKDERVVSVERIRESEI 902
             V +   +K++R+V+V  ++  E 
Sbjct: 579 AIVNVIPMSKEDRIVNVIPVKNFEE 603


>gi|145355547|ref|XP_001422022.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582261|gb|ABP00316.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 897

 Score =  680 bits (1754), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/915 (33%), Positives = 475/915 (51%), Gaps = 74/915 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I  V +  E + SYL+YA++VI+GRA+PD RDGLKPVHRRIL+GM ++G+  +K + 
Sbjct: 32  EEKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHR 91

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ ++Y+AL R+AQD+S+   L++G GNFGS+D DPPAA RYTE
Sbjct: 92  KCARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPPAAMRYTE 151

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           CRL K A   LL D+G + V+F   +DGS  EP VL AR PN+L+NG  GIAV +ATN+ 
Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE VD   A+  NPD  LD LM ++  PDFPTG V+  ++G+K  Y TG+G + +R
Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGGVVTNKSGMKEIYETGKGGVTLR 271

Query: 252 GVSHIEKTSG-----DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G + IE+ S      D++ +V++EIPYQ NKA ++E+IA+ V  + I  I+D+RDESDR 
Sbjct: 272 GRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRD 331

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIE+KRG  A  +L +LY  T L+  F VN VAL   KP    L  IL  F+ FR 
Sbjct: 332 GMRVVIEIKRGYDAASVLEELYAKTKLEVKFFVNNVALIDNKPTVMPLRQILDEFIKFRV 391

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + RRT+++L+KA+DR H++ G +I +A+ D VV+IIR S +  +A ++L +       
Sbjct: 392 DTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRE------- 444

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              +  LS++Q  +IL + L RLTGL  D +  EL  L  +I  
Sbjct: 445 -------------------SHGLSDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAH 485

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +LS++S+++ ++ QE +  K+    PRRT + +       ED    +D ++T+S  G
Sbjct: 486 FQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSVEQIESLSGVEDDSPPKDNILTLSERG 545

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVKR+    + AQ RG +G+    +R  D ++          +LFFS  G V K     +
Sbjct: 546 YVKRICPKNFGAQNRGTRGKRMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAI 605

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSW---NNLYVVFATKHGNVRRNKLS 663
           P       G    ++L+               +       ++  VV  T  G V     +
Sbjct: 606 PQSELNTIGVPATSLLNTFAKRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKVSVASAA 665

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT----TKLGQCVRFPISAIRVFAG- 718
             +         + LD  D +  V      + + +T       G  +   +   RV    
Sbjct: 666 SMLGHKGK--KVITLDKGDRLQQVMFARTSDHLFITGTGKAGKGLILHCRVGDFRVVKSA 723

Query: 719 -RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R   G++ +    G++ ++ A+V  A  D D+     + +  +   ++    E     +
Sbjct: 724 CRPISGIKTM----GEKKVAEAVVEDAGDDEDDDEDDGELLPPKTVGMAIVPGERMVSAS 779

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +                    FIL  ++KG GK  ++  +R+  R   G+      K ++
Sbjct: 780 EEF----------------GPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKGDD 823

Query: 838 IGALVAVFPVND-----NDQIILVSDKGTLIRVPVNEIRIASRA---TKGVVIFSTAKDE 889
             AL  +  V+       D+++L +  G   R+ VN++    R+     G  I      +
Sbjct: 824 -DALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDLPK--RSDPLALGAAIIKLDATD 880

Query: 890 RVVSVERIRESEIVD 904
            + S   +      +
Sbjct: 881 ALKSANLLPSEVASE 895


>gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 795

 Score =  679 bits (1751), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/892 (32%), Positives = 442/892 (49%), Gaps = 112/892 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  V I +E++++Y+ YA++VI GRAIPD+RDGLKPV RRILF M ++G+  NK Y K
Sbjct: 2   EDIKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ GE +GK+HPHG+ ++YDAL RMAQD+++R  LI+GQGNFGS+DGDP AA RYTE 
Sbjct: 62  SARVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L+D+ K+TVD  PN+D S +EP VL +++PN++ NG  GIAVG+AT+IP H
Sbjct: 122 RLTKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           N  EV +    +   PD  ++ L + I+GPDFPTG +I      I + Y T RGSI I+G
Sbjct: 182 NFTEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK  G+R+++V+ EIPYQVNK  ++++IAELVR  +   I+DLRDESDR G R+VI
Sbjct: 242 KARIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A  + +L +LY+ T L+  F VN   L   +P+  +L  IL+ F+  R EV+ RR
Sbjct: 302 ELKRDADPEKVLKKLYKSTPLEKSFPVNFTVLVDKQPKVLSLKEILQEFIKHRLEVITRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA +R H++ GL +A+ N D+V+ I+R S +   AR  L  R            
Sbjct: 362 TLFDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQARELLTTR------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q  AIL++RLAR T L    ++ E   L  +I+    ILS
Sbjct: 410 --------------YNLTETQANAILDMRLARFTALETTKLKEEKKELEAQIENYKKILS 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           +    + +  QE+  +  +    R+T I        +++   +E  +  +   G V    
Sbjct: 456 TEEEKIKVFIQEMDEMLSKYSDERKTTIAV------EKELTFKEYFMFAIMSSGKVYNHK 509

Query: 553 LSVYRAQRRGGKGRSG---VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +     +    +       +   +   +  +  V +   V FF+  G      V  LP G
Sbjct: 510 VDENTDKSEILQKIINDISLNSVEGKKIVSIQEVESSKPVAFFTKEGKADWSLVIDLPKG 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                              +I + +     +       V   TK G ++R    D     
Sbjct: 570 ---------------EGKLKIDSEIVGTIYQGEGEENRVFLITKKGIIKRMFDEDIF-YK 613

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                 M L+  DE+         + I + TK    + F  + +RV  G  + GV GI L
Sbjct: 614 SHKHTVMPLNEGDELAVAIADQNPSYIGIYTKNADLLLFERNEVRV-TGDKAKGVEGIDL 672

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D+V                                                      
Sbjct: 673 DPNDEVAG---------------------------------------------------- 680

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L     +IL  + KG+ K     +F I  R  KG+ A  +   N+   +V++ PV+ 
Sbjct: 681 -SFLIDGHNYILIATSKGYMKLVEKSEFPIKKRGQKGLMAVKL---NKDDYVVSMIPVDI 736

Query: 850 NDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
            + +++ +  G L+++ V+   I I  R + G   F+  + + +V V ++ +
Sbjct: 737 GEDVLVQTKHGKLLKIKVDPSIIPIGKRTSTGENKFNF-EADSIVKVLKLPK 787



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 6/180 (3%)

Query: 727 ISLAKGD---QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           I L KG+   ++ S  +      + +E   ++       + +  +     S K+      
Sbjct: 564 IDLPKGEGKLKIDSEIVGTIYQGEGEENRVFLITKKGIIKRMFDEDIFYKSHKHTVMPLN 623

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E           +I   ++          + R++    KG+   D+   +    +  
Sbjct: 624 EGDELAVAIADQNPSYIGIYTKNADLLLFERNEVRVTGDKAKGVEGIDL---DPNDEVAG 680

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            F ++ ++ I++ + KG +  V  +E  I  R  KG++     KD+ VVS+  +   E V
Sbjct: 681 SFLIDGHNYILIATSKGYMKLVEKSEFPIKKRGQKGLMAVKLNKDDYVVSMIPVDIGEDV 740


>gi|77407105|ref|ZP_00784104.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174287|gb|EAO77157.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 770

 Score =  678 bits (1750), Expect = 0.0,   Method: Composition-based stats.
 Identities = 330/795 (41%), Positives = 492/795 (61%), Gaps = 37/795 (4%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS
Sbjct: 1   MNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  MDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE +D    V+DNPD+    LME+I GPDFPTGA+++GR+GI  
Sbjct: 121 TGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVMGRSGIHR 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+GSIV+R  + IE TS  +E+IVVTE PY VNK  + E I  L +EKRI  I  +
Sbjct: 181 AYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAV 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES R+G R VIE++R ASA+VILN L++ TSLQ+ FS NM+A+    P+  +L  I+ 
Sbjct: 241 RDESSREGVRFVIEVRRAASANVILNNLFKLTSLQTNFSFNMLAIEKGVPKILSLRQIID 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  ++EV+VRRT++   KA  RAH+L GL +A+ +LDEV+ IIR S     A+ ELM 
Sbjct: 301 NYIEHQKEVIVRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMS 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE Q++AIL++RL RLTGL RD I++E N 
Sbjct: 361 R--------------------------FELSERQSQAILDMRLRRLTGLERDKIQSEYND 394

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I +  DIL+   R++ IIK+E+  VK +    RRT ++ G +   +++ ++ E+ V
Sbjct: 395 LLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDV 454

Query: 540 -VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            +T+S+ GY+KR+    +RAQ+RGG+G  G  + ++DFV +L   STH +VLFF++LG V
Sbjct: 455 LITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRV 514

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + +P     A+G  ++N+L L++GE I TI+   +++    N Y  F T+ G V+
Sbjct: 515 YRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKED--VANKYFFFTTQQGIVK 572

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R  +S+F  I ++G  A+ L   DE+++V    +  D+++ T+ G  VRF ++A+R   G
Sbjct: 573 RTSVSEFSNIRQNGLRAINLKENDELINVLLIDENEDVIIGTRTGYSVRFKVNAVRNM-G 631

Query: 719 RNSVGVRGISLAKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           R + GVRG++L +GD+V+  + IV   +        Y K   A      G   +     N
Sbjct: 632 RTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGYGKRTEASEYPTKGRGGKGIKTAN 691

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            ++  G ++           + I+ +++ G   RT+  +   + RS  G++   +   ++
Sbjct: 692 ITAKNGPLAR---LVTINGNEDIMVITDTGVIIRTNVANISQTGRSTMGVKVMRL---DQ 745

Query: 838 IGALVAVFPVNDNDQ 852
              +V V  V    +
Sbjct: 746 EAKIVTVALVEQEIE 760



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  T+    +    +  +       + + L
Sbjct: 281 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAGARAHIL-----EGLLVAL 335

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 336 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 386

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 387 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDE 446

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR +  +FR   R G+GI+ T V+  + +  LV+    + +D
Sbjct: 447 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 503

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            ++  ++ G + R+   EI    R  KG   V +    + E + ++   R+ ++
Sbjct: 504 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 557


>gi|218516073|ref|ZP_03512913.1| DNA gyrase subunit A [Rhizobium etli 8C-3]
          Length = 675

 Score =  677 bits (1747), Expect = 0.0,   Method: Composition-based stats.
 Identities = 481/665 (72%), Positives = 568/665 (85%), Gaps = 1/665 (0%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAA
Sbjct: 10  DVMGKYHPHGNAAIYDALARMAQHWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAA 69

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LLDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+
Sbjct: 70  HSLLDDLDKETVDFRDNYDGTVSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVI 129

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE  
Sbjct: 130 DGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPM 189

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
            GDREQI++TEIPYQVNKA M+EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+
Sbjct: 190 RGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDAN 249

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A+VILNQLYRYT LQ+ F  NMVALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL K
Sbjct: 250 AEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRK 309

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
           AR+RAHVLVGLAIAVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  +
Sbjct: 310 ARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRH 369

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            I  D T  LSE Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  
Sbjct: 370 RINEDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQT 429

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           I+K EL +V+DE  TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQ
Sbjct: 430 IVKDELTAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQ 489

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           RRGGKGRSG+  RDEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALI
Sbjct: 490 RRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALI 549

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL- 678
           N+L L  GERITTI+P PEDE SW+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL 
Sbjct: 550 NMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLE 609

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +  DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM
Sbjct: 610 EEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISM 669

Query: 739 AIVLH 743
            IV H
Sbjct: 670 TIVGH 674



 Score =  111 bits (276), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 16/243 (6%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             +F    R+  +   L+  DE L       E+ ++  + LG   R P++  R    R  
Sbjct: 439 RDEFGTPRRTEIVDGGLEMDDEDLIAR----EDMVVTVSHLGYIKRVPLTTYRA-QRRGG 493

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS------L 775
            G  G++    D V  + +V             + +     RL  G              
Sbjct: 494 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLP 553

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                    I      E       ++  + +G  +R    DF   NR+GK   A  + + 
Sbjct: 554 LAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGK--IAMKLEE- 610

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSV 894
            E   +++V    ++D ++L +  G  IR  V+++R+ A R + GV   +  + +R++S+
Sbjct: 611 -EGDEILSVETCTEHDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISM 669

Query: 895 ERI 897
             +
Sbjct: 670 TIV 672



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 9/174 (5%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     +    +       +       + +     E   +
Sbjct: 404 GDEL---NKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIVDGGLEMDDE 460

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++TVS  G+ KR     +R   R GKG         + +  L   F VN + 
Sbjct: 461 DLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRL---FVVNTHT 517

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902
            ++  S +G + +  V  + I +  ++G  + +    A  ER+ ++  + E E 
Sbjct: 518 PVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDEE 571


>gi|126659835|ref|ZP_01730961.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
 gi|126618892|gb|EAZ89635.1| DNA gyrase, subunit A [Cyanothece sp. CCY0110]
          Length = 838

 Score =  677 bits (1746), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/906 (32%), Positives = 455/906 (50%), Gaps = 112/906 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT  ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  EITPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A   +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 132 LSPIADQAMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDNP++  + L +II GPDFPTG  I+   GI++AY  G+G I +RGV
Sbjct: 192 NLGELVDGLIALIDNPELSDEKLWKIIPGPDFPTGGEIIQTQGIEDAYRHGKGIIPVRGV 251

Query: 254 SHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             IE+          R  I+VTE+PYQV K+  +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 252 VKIERMDVGKKRRKERTAIIVTELPYQVTKSTWIEKIADLVNGGRLDGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE 
Sbjct: 312 MRVVIELKRDAVAKTVLRELYKKTALQQNFGAIMLALVDNQPRQLSLRQLLEEFLKFREH 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  Y L + R+R H+L GL IA+ +LD ++ I+R + +  TA+ +  Q        
Sbjct: 372 TLTRQYNYELEECRNRLHLLEGLLIALEDLDRMIDILRHAADGTTAKAQFQQE------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + LSE Q   IL + + RLTGL R  ++ E + L   I E 
Sbjct: 425 -------------------LNLSEAQANGILAMPMRRLTGLERQKLQAEYDELAGRINEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVV 540
            ++L++R   L ++K+EL S+K +    RRTRIV+                    +++  
Sbjct: 466 ENLLNNRPEFLKVLKKELRSLKRKYGDQRRTRIVQPTPQKSSSKTAQTTKKQNNSQNLTT 525

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL----- 595
             S     K          +   K     +                 + +   S      
Sbjct: 526 ATSDKETEKTTRPFSLFTPQTPPKNAILEMTYQGTICWRSPDTKVPDNHVSIYSEAIQER 585

Query: 596 ---------GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
                    G  Y   V  +P      +   L+++LS         ++       + +N 
Sbjct: 586 EQFIVITDIGKAYPVNVADVP--PIDIQPIPLLSLLSKTAQRDSKKVVSLFFLSDTTDNK 643

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  T  G ++R +LS+   +   G + +KL  +D + SV    +  ++ +    G+ +
Sbjct: 644 DLLLLTNQGKIKRVQLSELEGLTNRGLVLIKLKEQDSLESVSITKEGEEVAIAMSSGRVL 703

Query: 707 RFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RFP +  +    GRN+ G + +    G+ ++S   +                        
Sbjct: 704 RFPVVDEVIPIMGRNAQGNQALKSRYGETIVSCVTLDE---------------------- 741

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                           + +L VS+ G+GKR +    R++     
Sbjct: 742 -------------------------------NKIVLLVSKLGYGKRLNITGLRMTKLGDI 770

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G +A   +  N+  +L+ +    D+  I L++++     +   ++++ S+  +G  +   
Sbjct: 771 GTQALQFT--NKQDSLLVMIKATDSKDITLLTNQKKTFNIVAKDVKVWSKDGQGDRLIKL 828

Query: 886 AKDERV 891
           +  E +
Sbjct: 829 SNQEVI 834



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIG 839
               +            + +L ++ +G  KR    +   ++NR   G+    + +     
Sbjct: 626 DSKKVVSLFFLSDTTDNKDLLLLTNQGKIKRVQLSELEGLTNR---GLVLIKLKE---QD 679

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERI 897
           +L +V    + +++ +    G ++R PV +  I I  R  +G     +   E +VS   +
Sbjct: 680 SLESVSITKEGEEVAIAMSSGRVLRFPVVDEVIPIMGRNAQGNQALKSRYGETIVSCVTL 739

Query: 898 RES 900
            E+
Sbjct: 740 DEN 742



 Score = 41.7 bits (96), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 40/76 (52%), Gaps = 6/76 (7%)

Query: 831 DVSKINEIGALVAVFPV---NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
             ++ +    +V++F +    DN  ++L++++G + RV ++E+       +G+V+    +
Sbjct: 621 KTAQRDSK-KVVSLFFLSDTTDNKDLLLLTNQGKIKRVQLSEL--EGLTNRGLVLIKLKE 677

Query: 888 DERVVSVERIRESEIV 903
            + + SV   +E E V
Sbjct: 678 QDSLESVSITKEGEEV 693


>gi|154795731|gb|ABS86853.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 726

 Score =  676 bits (1744), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/811 (37%), Positives = 443/811 (54%), Gaps = 92/811 (11%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   D
Sbjct: 1   GFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIA
Sbjct: 61  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           VGMATNIP HNLGE+ +     +DN     +  L A+ME ++GPDFPT  +I+G  GI +
Sbjct: 121 VGMATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIAD 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++
Sbjct: 181 AYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNI 240

Query: 300 RDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D+ SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L  ++
Sbjct: 241 EDQSSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLI 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+ L+
Sbjct: 301 RHYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLI 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                           + + E+Q +AIL+++L RL  L R  I ++L 
Sbjct: 361 E--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLA 394

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +  EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I RED+
Sbjct: 395 KIEAEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDV 454

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                           +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G V
Sbjct: 455 XXXXXXXXXXXXXXXXLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRV 514

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y+ K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V+
Sbjct: 515 YRAKAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNGLVK 571

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVF 716
           + KL+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +R  
Sbjct: 572 KTKLTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM 631

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV+G+     D ++S+ +V                                   
Sbjct: 632 -GRATSGVQGMRFNADDYLLSLNVVREGT------------------------------- 659

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                 ++L  +  G+ KRT+  ++ +  R GKG+      +  
Sbjct: 660 ----------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR- 696

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             G LV    V+++ ++  ++  G +IR   
Sbjct: 697 -RGRLVGALIVDEDSELYAITSGGGVIRTAA 726



 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R   GV+G  L + D V    +    D       +   Y                +  + 
Sbjct: 477 RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 536

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 E  I++           +++  +  G  K+T   DF  SNRSG GI A ++   
Sbjct: 537 LLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDF-DSNRSG-GIVAINLRD- 593

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVS 893
                LV     +  D ++LVS  G  IR    +  +R   RAT GV       D+ ++S
Sbjct: 594 --NDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLS 651

Query: 894 VERIRE 899
           +  +RE
Sbjct: 652 LNVVRE 657



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 12/231 (5%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQ 734
           L   D +     C+  + IL  T  G+  R     +   A R + G    +L      ++
Sbjct: 487 LKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYEL-PEASRTARGQHVANLLAFQPEER 545

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +    ++     +    +         ++    D +   S    +    +  E     L 
Sbjct: 546 I--AQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLC 603

Query: 795 LKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             E  +L VS  G   R S+ D   R   R+  G++       N    L+++  V +   
Sbjct: 604 SAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF---NADDYLLSLNVVREGTY 660

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902
           +++ +  G   R  + E  +  R  KGV  +    +  R+V    + E   
Sbjct: 661 LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSE 711



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +R   R GKG++   +    +   +V  F V + +D I+  + +G + R    E+  ASR
Sbjct: 472 YRSQKRGGKGVQGAGL----KQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASR 527

Query: 876 ATKGVVIFST---AKDERVVSVERIRESEI 902
             +G  + +      +ER+  V +IR  E 
Sbjct: 528 TARGQHVANLLAFQPEERIAQVIQIRSYED 557


>gi|228992294|ref|ZP_04152225.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
 gi|228767319|gb|EEM15951.1| DNA topoisomerase 4 subunit A [Bacillus pseudomycoides DSM 12442]
          Length = 806

 Score =  674 bits (1738), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 459/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +LL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKKLLQVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T   VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E +      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETLIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+GI+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPVGVRAA-GVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGRALN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----SEKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEVV 798



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 58/260 (22%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
              +        +V  TK G V+R     +   N S      +   D +L          
Sbjct: 493 IDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTEI 549

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERIC 753
           +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +        
Sbjct: 550 VLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLIWATVVPNFE-------- 601

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                     +++FI+ V+  G  K+T 
Sbjct: 602 -----------------------------------------EEKRFIVFVTRNGMIKKTE 620

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +++  R  +   A ++    +   +V +F  +    I+L +     +     E+   
Sbjct: 621 LNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPV 676

Query: 874 SRATKGVVIFSTAKDERVVS 893
                GV   +  +D+ V S
Sbjct: 677 GVRAAGVKGINLKEDDYVAS 696


>gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
 gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421]
          Length = 825

 Score =  673 bits (1737), Expect = 0.0,   Method: Composition-based stats.
 Identities = 318/911 (34%), Positives = 488/911 (53%), Gaps = 93/911 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   +  +  E +  +   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRILF M
Sbjct: 1   MPRQLELTGPEPKARVVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 61  HELGLAPDRPFRKCARVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTECRL       LL ++   TV+F  N+DGS +EP VL AR P +L+NG 
Sbjct: 121 DNDPPAAMRYTECRLAAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VDG VA+IDNP++  + L+ II GPDFPTG  I+G  GI+ 
Sbjct: 181 AGIAVGMATNIPPHNLGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGTEGIRE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           AY TGRGSI +RG++H E+    R +   I+VT +PYQVNKAA +EK+AELV   ++  I
Sbjct: 241 AYLTGRGSITMRGITHCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGI 300

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +DLRDES+R+G RVV+E+KR A  + IL  LYR T LQ+ F   ++ L G +P    L  
Sbjct: 301 SDLRDESNREGVRVVLEMKREARPEAILAGLYRLTPLQANFGTILLTLVGGQPRLLKLRE 360

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+ F+ FR   + RR +Y L +A +RAH L G  +A+ANL  +V++             
Sbjct: 361 LLEQFLEFRVATLTRRIQYNLRRASERAHQLEGQLVALANLQPIVQM------------- 407

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                        L    D +      + +  LSE Q+  IL++ L RLT L R+ + +E
Sbjct: 408 -------------LSAARDAAQARAELEASYGLSERQSEEILQMPLRRLTQLDRERLASE 454

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVR 535
              L  ++ E    L SR +LLG++K+EL  +K +   PRRT I           +    
Sbjct: 455 HRELREKVIELQSQLDSRRKLLGLLKRELRDLKKKHADPRRTCIEARTAPLPTLAEITSD 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +++VV ++H GYV+R+P + +  + R  +  S     D DFV + +   T   +L  +  
Sbjct: 515 DEVVVQLTHRGYVRRIPAAAFERRSRSRRAVSRTE--DNDFVVESYPTRTRNELLVITRS 572

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y  KV  +P   P++RG  L+ +LS+   +   T +     E+   +L++V  T+ G
Sbjct: 573 GRAYSLKVSEIPETGPRSRGTPLVTLLSIQGEQIAATFVR----ENYPPDLFLVLLTREG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR- 714
            +++  LS+   +   G + +KL   D+++ V   T  + I++ T  G+ +RF     + 
Sbjct: 629 RIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLATAHSQIVVGTSAGRLLRFVADEAQL 688

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+++G++ I L +G+ + +M +V + +         +        +   +      
Sbjct: 689 PAMGRSALGLQAIKLRRGESLAAMTVVGNGEDLLMVSRLGLGKRLKTGEIRLQERA---- 744

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                           G G  T     R  N             
Sbjct: 745 --------------------------------GLG--TPVGLLRERN------------- 757

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +L+AV  V    ++ + +D+  L++V + E+    R++ G  +      E++++V
Sbjct: 758 ---GDSLLAVLAVGAEGEVAMATDQERLVQVDLGELAATDRSSPGKPLAVLNPAEQIIAV 814

Query: 895 ERI-RESEIVD 904
            R+  E E  D
Sbjct: 815 TRLSAEPEETD 825


>gi|228998348|ref|ZP_04157940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
 gi|229005831|ref|ZP_04163526.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228755411|gb|EEM04761.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock1-4]
 gi|228761393|gb|EEM10347.1| DNA topoisomerase 4 subunit A [Bacillus mycoides Rock3-17]
          Length = 806

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 459/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDIDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSSVDDLLTVIKGPDFPTGGIIQGLDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQVPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSEYELRKAENRQHIVAGLMKALSILDEVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALEKEAEELEKKITELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +LL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKKLLQVIKADLKRVKKTYSDNRRAVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T   VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTEIVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E +      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETLIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+GI+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPVGVRAA-GVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGRPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----SEKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKQIVEEIDPKAFRNKDRYSNGSLVLDVTDTGEVV 798



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 80/260 (30%), Gaps = 58/260 (22%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
              +        +V  TK G V+R     +   N S      +   D +L          
Sbjct: 493 IDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTEI 549

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERIC 753
           +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +        
Sbjct: 550 VLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLIWATVVPNFE-------- 601

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                     +++FI+ V+  G  K+T 
Sbjct: 602 -----------------------------------------EEKRFIVFVTRNGMIKKTE 620

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +++  R  +   A ++    +   +V +F  +    I+L +     +     E+   
Sbjct: 621 LNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFNEEEVSPV 676

Query: 874 SRATKGVVIFSTAKDERVVS 893
                GV   +  +D+ V S
Sbjct: 677 GVRAAGVKGINLKEDDYVAS 696


>gi|297584212|ref|YP_003699992.1| DNA topoisomerase IV subunit A [Bacillus selenitireducens MLS10]
 gi|297142669|gb|ADH99426.1| DNA topoisomerase IV, A subunit [Bacillus selenitireducens MLS10]
          Length = 815

 Score =  673 bits (1736), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/905 (33%), Positives = 479/905 (52%), Gaps = 98/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+++    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   EQKERYLDLPLEDVLGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMDKNTHDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ R +QDW +R +L++  GN GSVDGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMIRQSQDWKMRHMLVQMHGNNGSVDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVDF PN+D S +EPVVL   YPN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISSEMLKDIEKNTVDFMPNFDDSQEEPVVLPGSYPNLLVNGSTGISSGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+LGEV+D  +  +D+PD  +  L+  I+GPDFPTG +I G  G++ AY +G+G +V+
Sbjct: 182 PPHHLGEVIDAAIHQMDHPDCSVHDLLTYIQGPDFPTGGIIQGIEGLQKAYESGKGKVVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + ++   G++EQI++TEIPY++NKA +++K+ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RGKAEVQAIRGNKEQIIITEIPYEINKANLVKKMDELRIDKKVDGIAEVRDDTDRTGMRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A +  IL+ LY+ T LQ  +  NMVA++   P+   L  +L A++  ++EVV 
Sbjct: 302 VIELKKEADSQGILHFLYKNTDLQVSYHFNMVAIHNKTPKLMGLKQMLDAYIQHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT + LNKARDRAH++ GL  A++ LDEV+  IR S + + A+  L             
Sbjct: 362 RRTNFDLNKARDRAHIVEGLIKAISILDEVIATIRASKDKKDAKNRL------------- 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +E Q+ AI+ L+L RLT      +  E   L   IK+   I
Sbjct: 409 -------------QASYQFTEPQSEAIVNLQLYRLTNTDITTLEKEAGELRELIKKLEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L S   L+  IK+EL  +K      RRT +   + D  +  E  +  E++ V+V+  GYV
Sbjct: 456 LESEKNLIKEIKKELRYIKKTYTDERRTMVEAEVEDLKINLEVVVPSEEVRVSVTKDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A            M++ D +     V+T  ++LFF+  G      V +LP 
Sbjct: 516 KRSSIRSYTASNGEEP-----SMKETDRLIHDLEVNTTDTLLFFTKKGSYLFVPVHQLPE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + NI++++Q + I   +P  E      + +++FATK G V+R+ L D+   
Sbjct: 571 TKWKDGGQHIANIVTMDQDDPIIHAIPVQEFR---EDRWLLFATKSGMVKRSVLKDYHAQ 627

Query: 669 NRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S    A+KL + DE+++V     E ++ L TK G  + F    +    G+ + GV+GI
Sbjct: 628 RHSKALTALKLKTDDELINVYLTNGEENLFLATKKGYGLWFSEEEV-SVTGQRTAGVKGI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L +GDQ+ ++++  +                                            
Sbjct: 687 NLKEGDQLAALSVFNN-------------------------------------------- 702

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                 + K  F+L V+++   KR +   F  + R+ +G+      K      + A   V
Sbjct: 703 ------EQKPDFVL-VTQRAAVKRMALKSFEKTTRAKRGVIMLKELKKAPH-EVAACMAV 754

Query: 848 NDNDQIILVSDKGTLIRVP----VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  + ++L S+     R        ++R++ R T G  I+    +  V  V  I    +V
Sbjct: 755 HGQETLVLESET----RTRHAVIPKQLRLSDRYTNGSFIYDVQSEGPVQDVWMIEPEPVV 810

Query: 904 DEAES 908
              E 
Sbjct: 811 GMNEE 815


>gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT]
 gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT]
          Length = 970

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/956 (31%), Positives = 482/956 (50%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I   SI++ M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--NIPKDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  +L D+ K+ VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +DGC+A IDN DI    LM  I+GPD PTG +++G   + +A
Sbjct: 179 GIAVGLATNIPPHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILIGEKALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y  G G + +R  ++IEK   DR  IV+TE PY+ NK+ ML+ I+E+  +K+       I
Sbjct: 239 YEKGEGRVTLRAKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALDAI 298

Query: 297 ADLRDESDRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIELK+      A+ +L  L++ T LQ   S NMVA+   KP+   
Sbjct: 299 SDIRDESDRNGIRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIADGKPKTLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  +++VV+RRTK  L  A  R H++ G   A+  +DE+++ IR S + + +
Sbjct: 359 LKAILKYYVEHQKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             S  Q  AI+EL L +LTGL     
Sbjct: 419 EENLVNK--------------------------FGFSREQAEAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   I     IL+S   L  +IK+EL  VK+     RRT I+       ++ E+
Sbjct: 453 EKEYKELQRRINALTKILNSEKELFKVIKKELNEVKENYGDERRTNIIHDDEKAKIDIEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+++T+S+ GY+KRV    Y+           +  R+ DF   +   +T  S++ 
Sbjct: 513 LILDEDVIITISNEGYIKRVSEKYYKRINP---KVEDIEYREGDFNKAILEGNTKYSLII 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ ++  +     + +G+ L N++     E+   ++ F   E   ++   +F 
Sbjct: 570 FTDEGNLYQLRIVNIAEMKWKEKGERLDNLIKTLDLEKEK-LINFYVIEELNSHKNFIFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQCVRF 708
           +  G ++++ L  F   N S  +A+KL   +++++V+       E  I + TK G  ++F
Sbjct: 629 SDRGMMKKSSLDKFKT-NYSKLLALKLKENEKLINVKLADNNRKEQYIKVQTKNG--LKF 685

Query: 709 PISAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADY------------------- 748
            +   R+    RN +G +  +L+  D+V  ++     +                      
Sbjct: 686 TVGEPRLENSDRNVMGNQLFNLSAEDKVKEISYTDEFEIKNFAVNINNKGKIKVSKKVNY 745

Query: 749 ------------------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                             D+   ++        + +   +    +   +  E +I     
Sbjct: 746 KNFKGCYANSLSNIIIFGDKGSVFLLPAYLIENIDNNGVKLSNLIDEFNENEESIVNIFA 805

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND- 849
                 E+    +SE G+ K+T   +F+ +    KG +       ++   L+ V   ++ 
Sbjct: 806 ITEFNDEESFYFISENGYVKKTMLNEFQGNYSYTKGYKL-----KDKDDKLINVLKKDNK 860

Query: 850 -NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
               I+L++ K   IR   + I    +   GV   S ++D++V+  E I   +  D
Sbjct: 861 LEKDILLITKKDMRIRFDSDSINPMGKIASGVTGISLSEDDKVIFGEFIYLEDNDD 916



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/270 (20%), Positives = 101/270 (37%), Gaps = 11/270 (4%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED V  +S+    +        A     KG+  V  +           ++ ++++ F 
Sbjct: 708 SAEDKVKEISYTDEFEIKNF----AVNINNKGKIKVSKKVNYKNFKGCYANSLSNIIIFG 763

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V+    + +   +    G  L N++     E   +I+         +     F ++
Sbjct: 764 DKGSVFLLPAYLIE--NIDNNGVKLSNLID-EFNENEESIVNIFAITEFNDEESFYFISE 820

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPIS 711
           +G V++  L++F       K     D  D++++V       E DILL TK    +RF   
Sbjct: 821 NGYVKKTMLNEFQGNYSYTKGYKLKDKDDKLINVLKKDNKLEKDILLITKKDMRIRFDSD 880

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +I    G+ + GV GISL++ D+VI    I L  + D  +     K+          +  
Sbjct: 881 SINPM-GKIASGVTGISLSEDDKVIFGEFIYLEDNDDKIKVYGETKNKLEVMYEDDSEEV 939

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFI 800
            I    N+ +  G   + R        +FI
Sbjct: 940 VILKGINNQNRAGKGKKIRVSNCNSNIKFI 969


>gi|294499299|ref|YP_003562999.1| DNA topoisomerase IV subunit A [Bacillus megaterium QM B1551]
 gi|294349236|gb|ADE69565.1| DNA topoisomerase IV, subunit A [Bacillus megaterium QM B1551]
          Length = 808

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/888 (33%), Positives = 469/888 (52%), Gaps = 88/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K +
Sbjct: 3   QTERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K TV+F  N+D +  EP VL A +PN+LVNG  GI+ G AT +P
Sbjct: 123 EARLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P   ++ LM  I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIP++VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 243 GKTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A  +L+ LY+ T LQ  ++ NMVA+   +P+  +L  IL A++  + EVV  
Sbjct: 303 VELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+R H++ GL  A++ LDEV+  IR S +   A+  L+ +           
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   LG +I E  +IL
Sbjct: 412 ---------------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +L  +IK+EL  VK +  T RR+        + +  E  +  E+++VTV+  GYVK
Sbjct: 457 HSEKKLFNVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A            M+D D +   + ++T  ++L F++ G      V  LP  
Sbjct: 517 RTSLRSYAASNG-----QDFGMKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ ++NI+ +++ E+I   +P  E +    N Y++F TK+G V++++L  +    
Sbjct: 572 RWKDMGQHIMNIVPIDKEEQIVRAIPVKEFK---ENQYLLFFTKNGMVKKSELLQYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V     +  + + T+ G  +RF    I +   R + GV+GI+
Sbjct: 629 YSKALVAVNLKGDDEVVDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTR-ASGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+S  I    +A   E                                      
Sbjct: 688 LKDDDYVVSGVIFDEDEALSTE-------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +   +++G  K+T   +F  S R+ +G+      K N    +  V  ++
Sbjct: 710 -----------LFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH-QIAKVKAIS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               +I+ S KG + +V  + +R + R + G  +   ++   +V V  
Sbjct: 758 KEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQSEAGNLVDVWL 805



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 86/263 (32%), Gaps = 59/263 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R  L  +   N        +   D IL+         +L+ T  G  + 
Sbjct: 506 MVTVTKDGYVKRTSLRSYAASNGQDF---GMKDTDRILAKYEINTTETLLIFTNKGNYLY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +     ++ +G   +++   D+                                 
Sbjct: 563 MPVHELPDIRWKD-MGQHIMNIVPIDK--------------------------------- 588

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                         E  I      +   + Q++L  ++ G  K++    ++   R  K +
Sbjct: 589 --------------EEQIVRAIPVKEFKENQYLLFFTKNGMVKKSELLQYKAQ-RYSKAL 633

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A ++        +V V+  +   Q+ + +  G  +R    EI I      GV   +   
Sbjct: 634 VAVNLK---GDDEVVDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTRASGVKGINLKD 690

Query: 888 DERVVSVERIRESEIVDEAESTE 910
           D+ VVS     E    DEA STE
Sbjct: 691 DDYVVSGVIFDE----DEALSTE 709


>gi|212639274|ref|YP_002315794.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
 gi|212560754|gb|ACJ33809.1| DNA topoisomerase IV subunit A [Anoxybacillus flavithermus WK1]
          Length = 798

 Score =  673 bits (1735), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/814 (35%), Positives = 456/814 (56%), Gaps = 42/814 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + +  +   D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K
Sbjct: 2   ERVLDLPFEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYVDGNTSDKPFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G +HPHG++++Y+A+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKTVGNVIGNFHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP H
Sbjct: 122 RLSAIASELLRDIEKETVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATEIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           +LGEV+D  +  ID+P   +D LM +++GPDFPTG +I G+ GIK AY TG+G IVIRG 
Sbjct: 182 HLGEVIDAVIMRIDHPTCTVDDLMTVLKGPDFPTGGIIQGKEGIKTAYETGKGKIVIRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++ IV+TEIPY+VNKA +++KI EL  EK++  I D+RDE+DR G R+VIE
Sbjct: 242 ATIEQGKGGKQAIVITEIPYEVNKANLVKKIDELRLEKKLDGIIDVRDETDRTGLRIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +++  +A+ ILN LY+ T LQ  +S NMVA++  +P+   L  +L A++  ++EVV  R+
Sbjct: 302 VRKDGNAEGILNYLYKNTDLQITYSFNMVAIHERRPKLLNLPQMLDAYIEHQKEVVANRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y L KA++RAH++ GL  AV+ LDE++  IR S + + A+  LM +             
Sbjct: 362 RYELQKAKERAHIVEGLMKAVSILDEIIATIRASQDKKDAKTNLMDQ------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  AI+ L+L RLT     D+R E N+L  +I++   IL S
Sbjct: 409 -------------YGFTEPQAEAIVTLQLYRLTNTDIYDLREEANALHDKIEQLTSILES 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             +LL +IK EL  +K      RRT        + +E    I  ED++VT++  GY+KR 
Sbjct: 456 EKKLLSVIKSELRKMKKTYADERRTTIEEEIKEIKIEMNVVIPEEDVIVTITKDGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y A          + M++ D +  +F ++T  ++L F++ G      V+ LP    
Sbjct: 516 SLRSYSASNG-----QDIGMKEGDRLLGMFEMNTTHTLLLFTNKGNYLYCPVYELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + +I+ L++ E++T+ +P  +      N Y++F TK G V++  L  +     S
Sbjct: 571 KDLGQHISHIIPLDRDEQLTSAIPIADF----ENGYLLFITKQGFVKKTHLVHYKAQRYS 626

Query: 672 GKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             + AM+L   DE+++V        I L T+ G  + F    I     R + GV+GI L 
Sbjct: 627 KPLVAMRLKEDDEVVNVYQTNGMGHIFLVTQYGYGLLFSEEEIGEVGVRAA-GVKGIHLK 685

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V+S       +     +    K ++     +S   +    L  +            
Sbjct: 686 DGDDVVSGQQATDENIILVTKRGAAKKIARAEIELSTRAKRGQLLVKEVKTN---PHRLV 742

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
               +   +++  +EKG  +     + R+S+R G
Sbjct: 743 SCHFISHGWVILKTEKGITEEVHVDELRLSDRYG 776



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 12/210 (5%)

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM--AIVLH 743
                 +E+ I+  TK G   R  + +     G      + I + +GD+++ M      H
Sbjct: 493 MNVVIPEEDVIVTITKDGYIKRTSLRSYSASNG------QDIGMKEGDRLLGMFEMNTTH 546

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
               +  +  Y+     +   I                              +  ++L +
Sbjct: 547 TLLLFTNKGNYLYCPVYELPDIRWKDLGQHISHIIPLDRDEQLTSAIPIADFENGYLLFI 606

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++GF K+T    ++   R  K + A  + +      +V V+  N    I LV+  G  +
Sbjct: 607 TKQGFVKKTHLVHYKAQ-RYSKPLVAMRLKE---DDEVVNVYQTNGMGHIFLVTQYGYGL 662

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                EI        GV        + VVS
Sbjct: 663 LFSEEEIGEVGVRAAGVKGIHLKDGDDVVS 692


>gi|56963753|ref|YP_175484.1| DNA topoisomerase IV subunit A [Bacillus clausii KSM-K16]
 gi|56909996|dbj|BAD64523.1| DNA topoisomerase IIA subunit A [Bacillus clausii KSM-K16]
          Length = 807

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/891 (32%), Positives = 463/891 (51%), Gaps = 92/891 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K Y
Sbjct: 3   KSERYLDLPLEEVIGDRFSRYSKYIIQERALPDARDGLKPVQRRILYAMYNEGNTADKPY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R  LI+  GN GSVDGDPPAA RYT
Sbjct: 63  RKAAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVREQLIDMHGNNGSVDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  L+ DL K TVD+ PN+D S +EPVVL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAISAELMRDLDKGTVDYIPNFDDSIEEPVVLPAMFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E++DG   ++  P   LD L+EII+GPDFPTG ++ G  GI+ AY TG+G IV+R
Sbjct: 183 PHHLPEIIDGITLLMQKPHTSLDELLEIIKGPDFPTGGIVQGSNGIRQAYETGKGKIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE+T G R+QIV+TEIPY+V KA++++K+ E+  +K++  IA++RD++DR G R+V
Sbjct: 243 GRTAIEETRGGRKQIVITEIPYEVVKASLVKKMDEIRFDKKVDGIAEVRDDTDRTGMRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A  + IL+ L++ T LQ  +  NMVA++   P+   L+ +++A++  +++V  R
Sbjct: 303 VELKKEADPEAILHYLFKNTDLQVTYHFNMVAIHNKTPKLMGLLDLMQAYIDHQKQVFTR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L KA DRAH++ GL  AV+ LDEV+ +IR S + + A+  L              
Sbjct: 363 RSQFELKKAVDRAHIVEGLMKAVSILDEVIAVIRASKDKKDAKANL-------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   L  +I E   IL
Sbjct: 409 ------------QSQFGFTEPQAEAIVTLQLYRLTNTDITTLQKEAEELEKQIAELKAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
           +S  +L+ +IK+EL  +K    +PRRT I   +    +  +  I  ED+ VT++  GYVK
Sbjct: 457 ASEKKLISVIKKELNQIKKTFASPRRTEIRAEIEEIKINMDMLIASEDVRVTITKAGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A  + G       M++ D +      +T   VL F+  G      V  LP  
Sbjct: 517 RTSLRSYSASSQDGP-----GMKEGDRLLLSQEANTTDVVLLFTKRGSYLYVPVHSLPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N+++++  + I       E        Y++F T+ G  +R+ L+ +    
Sbjct: 572 RWKDDGQHVANLVAIDADDEIIAAQIIREFA---ETKYLLFMTRAGMAKRSTLNLYQAQR 628

Query: 670 RSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S   +A+KL   DE++ V     + ++ + T  G  + F    +    G+ + GV+GI+
Sbjct: 629 YSKPLMALKLKEGDEVVRVLLTDGQQELFVATAFGYGLWFSEEDV-SLVGQRAAGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD  I        D+                                          
Sbjct: 688 LKEGDYCIGAEAFGLEDSVEF--------------------------------------- 708

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                       L  + +G  K+ +  +F  S+R+ +G+      K N    LV +  V 
Sbjct: 709 ------------LVATHRGAVKKMAITEFEKSSRAKRGVLMLRELKNNPH-RLVGLKRVR 755

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERI 897
             D+   + + KG +I +   + R A R + G   F   +  + +  V  I
Sbjct: 756 SQDETFAIETAKGDMIAISPRDYRRADRYSNGSYAFDQHESGDALTLVRVI 806



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 55/271 (20%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    D    +    V  TK G V+R  L  +   ++ G     +   D +L  +     
Sbjct: 492 IKINMDMLIASEDVRVTITKAGYVKRTSLRSYSASSQDGP---GMKEGDRLLLSQEANTT 548

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +LL TK G  +  P+ ++     +            G  V ++  +   D        
Sbjct: 549 DVVLLFTKRGSYLYVPVHSLPDIRWK----------DDGQHVANLVAIDADD-------- 590

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                          I   +      + +++L ++  G  KR++
Sbjct: 591 ------------------------------EIIAAQIIREFAETKYLLFMTRAGMAKRST 620

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              ++   R  K + A  + +      +V V   +   ++ + +  G  +     ++ + 
Sbjct: 621 LNLYQAQ-RYSKPLMALKLKEG---DEVVRVLLTDGQQELFVATAFGYGLWFSEEDVSLV 676

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            +   GV   +  + +  +  E     + V+
Sbjct: 677 GQRAAGVKGINLKEGDYCIGAEAFGLEDSVE 707


>gi|295704653|ref|YP_003597728.1| DNA topoisomerase IV subunit A [Bacillus megaterium DSM 319]
 gi|294802312|gb|ADF39378.1| DNA topoisomerase IV, subunit A [Bacillus megaterium DSM 319]
          Length = 808

 Score =  672 bits (1734), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/888 (33%), Positives = 469/888 (52%), Gaps = 88/888 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K +
Sbjct: 3   QTERFLDLPLEDVLGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMHVDGNTAEKGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R +LIE  GN GS+DGDPPAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQEWKVRNVLIEMHGNNGSIDGDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K TV+F  N+D +  EP VL A +PN+LVNG  GI+ G AT +P
Sbjct: 123 EARLSSIAAELLRDIDKQTVEFVSNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYATELP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P   ++ LM  I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 183 PHHLGEVIDATIMRIDKPTCTIEELMTAIQGPDFPTGGIIQGVDGIKKAYETGKGKIIIR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIP++VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 243 GKTEVESIRGGKQQIVITEIPFEVNKANLVKKMDELRLDKKVEGIAEVRDETDRTGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A  +L+ LY+ T LQ  ++ NMVA+   +P+  +L  IL A++  + EVV  
Sbjct: 303 VELKKDANAQGVLHYLYKNTDLQVPYNFNMVAIAKKRPKLMSLANILDAYIDHQREVVTN 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+KY L KAR+R H++ GL  A++ LDEV+  IR S +   A+  L+ +           
Sbjct: 363 RSKYELQKAREREHIVAGLIKALSILDEVIATIRASKDKRDAKNNLIAK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E   LG +I E  +IL
Sbjct: 412 ---------------YEFTEPQAEAIVSLQLYRLTNTDITALQAEAEELGAKINELEEIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +L  +IK+EL  VK +  T RR+        + +  E  +  E+++VTV+  GYVK
Sbjct: 457 HSEKKLFNVIKKELRRVKKQYSTERRSKIEAEIEEIKINLEVMVPSEEVMVTVTKDGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A            M+D D +   + ++T  ++L F++ G      V  LP  
Sbjct: 517 RTSLRSYAASNG-----QDFGMKDTDRILAKYEINTTETLLIFTNKGNYLYMPVHELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ ++NI+ +++ E+I   +P  E +    N Y++F TK+G V++++L  +    
Sbjct: 572 RWKDMGQHIMNIVPIDKEEQIVRAIPVKEFK---ENQYLLFFTKNGMVKKSELLQYKAQR 628

Query: 670 RSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S  + A+ L   DE++ V     +  + + T+ G  +RF    I +   R + GV+GI+
Sbjct: 629 YSKALVAVNLKGDDEVIDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTR-ASGVKGIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V+S  I    +A   E                                      
Sbjct: 688 LKDDDYVVSGVIFDEDEALSTE-------------------------------------- 709

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +   +++G  K+T   +F  S R+ +G+      K N    +  V  ++
Sbjct: 710 -----------LFIATQRGAVKKTKITEFEESARAKRGLVMVRELKSNPH-QIAKVKAIS 757

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               +I+ S KG + +V  + +R + R + G  +   ++   +V V  
Sbjct: 758 KEHYMIVESSKGQIEQVDPSTMRASDRYSNGSFVLDQSEAGNLVDVWL 805



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 59/263 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R  L  +   N        +   D IL+         +L+ T  G  + 
Sbjct: 506 MVTVTKDGYVKRTSLRSYAASNGQDF---GMKDTDRILAKYEINTTETLLIFTNKGNYLY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +     ++ +G   +++   D+                                 
Sbjct: 563 MPVHELPDIRWKD-MGQHIMNIVPIDK--------------------------------- 588

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                         E  I      +   + Q++L  ++ G  K++    ++   R  K +
Sbjct: 589 --------------EEQIVRAIPVKEFKENQYLLFFTKNGMVKKSELLQYKAQ-RYSKAL 633

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            A ++        ++ V+  +   Q+ + +  G  +R    EI I      GV   +   
Sbjct: 634 VAVNLK---GDDEVIDVYQTDGKKQVFIATRSGYGLRFREEEINIVGTRASGVKGINLKD 690

Query: 888 DERVVSVERIRESEIVDEAESTE 910
           D+ VVS     E    DEA STE
Sbjct: 691 DDYVVSGVIFDE----DEALSTE 709


>gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
 gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund]
          Length = 970

 Score =  671 bits (1732), Expect = 0.0,   Method: Composition-based stats.
 Identities = 301/956 (31%), Positives = 474/956 (49%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  +  ++  I   SI++ M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNV--NIPKDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +DGC+A I+N +I    LM  I+GPD PTG +++G   + +A
Sbjct: 179 GIAVGLATNIPPHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILIGEKALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y  G G + +R  ++IEK   DR  IV+ E PY+ NK+ ML+ I+E+  +K+       I
Sbjct: 239 YEKGEGRVTLRAKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIELK       A+ +L  L++ T LQ   S NMVA+   KP+   
Sbjct: 299 YDIRDESDRNGIRAVIELKKSADMEEAERVLKYLFKKTELQCNLSFNMVAIAEGKPKTLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  +++V+ RRTK  L  A+ R H++ G   A+  +DE+++ IR S + + +
Sbjct: 359 LKSILKYYVEHQKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+                          G    S  Q  AI+EL L +LTGL     
Sbjct: 419 EENLV--------------------------GKFGFSREQAEAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   I     IL+S   L  +IK+EL  VK+     RRT I+       ++ ED
Sbjct: 453 EKEYRELQRRINALTKILNSEKELFKVIKKELNEVKENYGDERRTNIIHDDEKAKIDIED 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV E++V+TVS+ GY+KRV    Y+           +  R+ DF   +   +T  +++ 
Sbjct: 513 IIVDENVVITVSNDGYIKRVSEKYYKRINP---KIEDIEYREGDFNKFILEGNTKDNLIM 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ ++  +P    + +GK L  ++     E+    + F   +   +N    F 
Sbjct: 570 FTDAGNLYQLRIVNIPEMKWKEKGKRLDELIKTLDLEKEK-FIEFYVIDELNSNKNFFFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQCVRF 708
           T  G +++  L  F   N S  +A+KL   ++++ V+       E  I + +K G  + F
Sbjct: 629 TNRGMIKKTSLDKFKT-NYSKLLALKLKENEKLIDVKLNYNNRKEQYIKIQSKNG--LEF 685

Query: 709 PISAIR-VFAGRNSVGVRGISLAKGDQVIS------------------------------ 737
            +S  R     RN +G +  +L+  D+V +                              
Sbjct: 686 TVSEPRIENNDRNVMGNQIFNLSSQDEVKNICYTDEFNIKNFAVNINSKGKIKISKKINY 745

Query: 738 -------MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
                     + +     ++   ++        + +G  +    +   +  E +I     
Sbjct: 746 KNFKGCYANSLSNIVIFGNKGNVFLFPAYLIENIDNGLIKLSNLIDEFNENEEDIISIFS 805

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                 +     +SE+G+ K+T   +F       KG +       N+   L+ V   ++ 
Sbjct: 806 ISEFDDKSSFYFISEEGYVKKTMLSEFNGMYSYTKGYKL-----KNKDDKLINVLLNDNT 860

Query: 851 --DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
               I+L++ K   IR   N I    +   GV   S  +D++V+  E I + + +D
Sbjct: 861 FKTDILLITKKDMRIRFESNSINPMGKIASGVTGISLNEDDKVIFGEFIYQEDNID 916



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 95/246 (38%), Gaps = 7/246 (2%)

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           A     KG+  +  +           ++ ++++ F + G V+    + +   +       
Sbjct: 728 AVNINSKGKIKISKKINYKNFKGCYANSLSNIVIFGNKGNVFLFPAYLIE--NIDNGLIK 785

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L N++     E    I+         +     F ++ G V++  LS+F  +    K    
Sbjct: 786 LSNLID-EFNENEEDIISIFSISEFDDKSSFYFISEEGYVKKTMLSEFNGMYSYTKGYKL 844

Query: 678 LDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            +  D++++V         DILL TK    +RF  ++I    G+ + GV GISL + D+V
Sbjct: 845 KNKDDKLINVLLNDNTFKTDILLITKKDMRIRFESNSINPM-GKIASGVTGISLNEDDKV 903

Query: 736 I-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           I    I    + D  +    +K+        + +   I    N+ +  G   + R  +L 
Sbjct: 904 IFGEFIYQEDNIDKIKICGEIKNKLEVSYDDNSEEVVILKDINNQNRAGKGKKIRSSDLN 963

Query: 795 LKEQFI 800
              +++
Sbjct: 964 TYIKYV 969


>gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
 gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus']
          Length = 793

 Score =  671 bits (1731), Expect = 0.0,   Method: Composition-based stats.
 Identities = 311/893 (34%), Positives = 497/893 (55%), Gaps = 104/893 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I  ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRIL+   ++G+  NK + 
Sbjct: 2   SEEIYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAHK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEV+GK+HPHG++A+YDAL RMAQD++ R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 62  KSARLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + A  LL+++ ++TV FR N+DG+ QEP VL ++ PN+L+NG  GIAVGM+T+IP 
Sbjct: 122 TKLTEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EV+D  + +++ P+  LD ++   + GPDFPTGA I+G  GIK+AY  G+G I++R
Sbjct: 182 HNLAEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIVGNEGIKSAYENGKGKIILR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IEK     + I++TEIPYQ+NK+ ++E+IAELV + ++  ++DLRDESD+ G R++
Sbjct: 242 AKSKIEKEGR-HKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIRIL 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I LK GA  ++ LN+LY+YTS+QS F +N++AL+  KP+   L+ IL  F+ FR+EV+  
Sbjct: 301 IALKSGADPELTLNRLYKYTSMQSSFRINLLALDNKKPKVMGLLEILNHFIEFRKEVIKN 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            TKY LNK+ +R H+L GL IA+  LD V++IIR S     A+ +L+++           
Sbjct: 361 HTKYNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQ----------- 409

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                          + +SEVQ ++IL+++L RL G+  + +  E   L  +IKE   IL
Sbjct: 410 ---------------LNISEVQAQSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
           +    L   +K EL  +KD+    RRT I+E     ++  +D I  ++ VV++S+ G +K
Sbjct: 455 TEEKTLKEYLKNELKEMKDKFADKRRTTIIEDDEKAEINKQDLIKEKEAVVSLSYRGIIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R             +  S +     D++      S+   +LFFS  G VY  +V  L   
Sbjct: 515 R------------NEEYSNLRAAKNDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEH 562

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A G  L   + L   E I ++    +   +  N + VF T+ G ++R    ++   N
Sbjct: 563 HGLATGDNLSKYMQLPLEENIISLNILSK--KNKQNNFYVFVTESGQIKRTAAKEYET-N 619

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            S   A+KL   D++++VE   +++ I++ ++ G  +RF   +     GRN++G + I L
Sbjct: 620 YSHIRAIKL-DNDKLINVEKAEEKDQIMIISQNGYAIRFKGKSFSS-TGRNTMGSKAIKL 677

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           AK D+V + +I                                                 
Sbjct: 678 AKNDKVTAFSIFN----------------------------------------------- 690

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 K +++++V+E G   +     FR+  R+G+G R       N+   L       +
Sbjct: 691 ------KNKYLVSVTETGRANKIKLSQFRLQKRNGRGQRIFS----NQNYKLAGAAFCEE 740

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           N++I++ +  G +  V V++I   S       I      E++  V++I   + 
Sbjct: 741 NEKILIAAKNGEMYTVEVDKIPETSPGGNMYQITKNIDFEKITRVKKILIPDD 793


>gi|23099149|ref|NP_692615.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
 gi|22777377|dbj|BAC13650.1| DNA topoisomerase IV subunit A [Oceanobacillus iheyensis HTE831]
          Length = 816

 Score =  670 bits (1728), Expect = 0.0,   Method: Composition-based stats.
 Identities = 300/891 (33%), Positives = 467/891 (52%), Gaps = 91/891 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M       +K 
Sbjct: 2   SQTEKYLDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHMERNTHDKH 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ R++QDW +R  LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGTVIGNYHPHGDSSVYDAMVRLSQDWKVRNGLIEMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K TVD+ PN+D +  EPVVL A++PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSSISAELLRDIDKQTVDYIPNFDETTDEPVVLPAKFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  +  ID P+  +D LM++++GPDFPTG +I G  GI+ AY TGRG I++
Sbjct: 182 PPHNLEEVMDAVILKIDKPEASIDDLMKLMKGPDFPTGGIIQGVEGIRKAYETGRGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + +E   G REQIVVTE+P++VNKA M++K+ EL  ++++  IA++RDE+DR G RV
Sbjct: 242 RGKAVVETMKGGREQIVVTEVPFEVNKATMVKKMDELRIDRKVEGIAEVRDETDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A+++ +LN LY+ T LQ  +  NMVA+    P+  +L  +L A++A ++EVV 
Sbjct: 302 VIELKKDANSEGVLNYLYKNTDLQITYHFNMVAIQDKTPKLLSLPSLLDAYIAHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+  Y LNKA  RAH++ GL  A++ LDE++  IR S +   A+ ++  +          
Sbjct: 362 RQITYDLNKANARAHIVEGLIKAISILDELIATIRASKDKGDAKAQIKAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     ++  E   L  +IKE   I
Sbjct: 412 ----------------YGFTEEQAEAIVMLQLYRLTNTDIVELEKEAAELKEKIKEYESI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           LSS  +L   IK+EL  +K +   PRRT I E +    +  E  +  ED++V+V+  GY+
Sbjct: 456 LSSDKKLFQTIKKELRQIKKKFADPRRTVIEEKIEELKINIEVTVASEDVLVSVTRDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A             +D+D+   L  V+T  ++L F++ G      V  LP 
Sbjct: 516 KRTSLRSYAASNEEELPV-----KDDDYPISLLEVNTTDNLLLFTNKGKYILCPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + NI+ L++ E +   MP  + +      Y++F TK+G V+R++   +   
Sbjct: 571 IRWKDMGQHISNIVPLDKEEYLIQCMPVRDFK--SAEGYLIFFTKNGMVKRSEFQLYDAQ 628

Query: 669 NRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            RS   IA+ L   DE++ V       D+ + T  G  + +  S I    G+ + GV+ +
Sbjct: 629 RRSKALIALNLKGDDEVVHVSHTNGNMDVFIATYKGYGLWYHESEI-SVVGQRAAGVKSV 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL   D+V++  +                                               
Sbjct: 688 SLKDDDEVVNGQVFDD-------------------------------------------- 703

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  L E  +  ++++G  KR    DF  + R+ +G+      K N+   +   F +
Sbjct: 704 -------LSEPSLALITQRGSCKRMKLKDFEKTTRAKRGVIMLRELK-NKAHRVKGFFAL 755

Query: 848 NDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            D+D  QI   +  G    +    ++   R   G  +  T  +  V+ V +
Sbjct: 756 QDHDGQQICFQTANGNTHEIVPLTLKATDRYNNGSFVIDTDHEGEVIHVWK 806


>gi|288556235|ref|YP_003428170.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
 gi|288547395|gb|ADC51278.1| DNA topoisomerase IV subunit A [Bacillus pseudofirmus OF4]
          Length = 810

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/887 (32%), Positives = 467/887 (52%), Gaps = 90/887 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G   +K 
Sbjct: 2   SQTERYLDLPLEDVIGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMYRDGNTADKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++YDA+ RM+Q+W +R LL++  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYDAMIRMSQEWKVRNLLVDMHGNNGSIDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TVD+ PN+D S  EPVVL A +PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISAELLRDIDKETVDYIPNFDDSEDEPVVLPAMFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG +  ++ P   L+ LM +I+GPDFPTG ++ G  GIK AY TG+G +++
Sbjct: 182 PPHHLSEIIDGVIMQMEKPQTTLEDLMTVIKGPDFPTGGIVQGIDGIKQAYRTGKGKVIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E+  G R+QI +TEIPY+V KA +++K+ EL  +K++  IA++RD++DR G R+
Sbjct: 242 RAKTEVEELRGGRQQITITEIPYEVVKANLVKKMDELRFDKKVDGIAEVRDDTDRTGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A A  IL+ L++ T LQ  ++ NMVA++   P+   L  +++A++  ++EV  
Sbjct: 302 VVELKKEADAKAILHYLFKNTDLQVTYNFNMVAIHNKTPKLMGLQPLIQAYIDHQKEVAT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L KA+DR H++ GL  A++ LDEV+  IR S + + A+  L+            
Sbjct: 362 RRAQYDLKKAKDRQHIVKGLIKAISILDEVIATIRSSKDKKDAKENLI------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT      +  E   L   I E   I
Sbjct: 410 --------------REYDFSEAQAEAIVTLQLYRLTNTDITTLEEEAAELERRIHELEAI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L S  +L+ +IK+ L SVK +   PRRT  +     + +  +  +  ED++VTV+  GYV
Sbjct: 456 LGSEKKLITVIKKGLQSVKKQFADPRRTVIKEEIEEIKINMDVLVASEDVMVTVTEEGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A            M++ D + D F ++T  ++L F+ LG      V  LP 
Sbjct: 516 KRTSIRSYTASNGEPP-----GMKEGDRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + N++S+++ + I   MP  E      +  ++F TK+G  +R++LS +   
Sbjct: 571 IRWKDNGQHIANLVSVDRDDCILRAMPVKEFS---ESESLLFITKNGMAKRSQLSLYQAQ 627

Query: 669 NRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S   +A+KL + DE++SV     + ++ + T LG  + F    I    G+ + GV+ I
Sbjct: 628 RFSKPLMALKLKADDEVVSVMRTDGKKELFIATHLGYGLWFDEEEI-SLVGQRAAGVKAI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+V+        D                                          
Sbjct: 687 NLKDDDKVVDAFTFEPEDKVD--------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +  V+ +G  K+    +F  S+R+ +G+      K N    ++    V
Sbjct: 708 ------------LFIVTHRGAVKKMPLSEFDKSSRAKRGLVMLRELKSNAH-RVIGCRRV 754

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +    I ++++KG    +  +  R++ R + G     +A+   V  V
Sbjct: 755 SKETLIEILTEKGQQETIDPSAYRMSDRYSNGSFAIDSAQAGSVTEV 801



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 9/182 (4%)

Query: 726 GISLAKGDQVIS---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G+   +GD+++    M                   +     +   D  +  +       +
Sbjct: 532 GMK--EGDRLLDRFEMNTTDTLLLFTKLGSYLYVPVHHLPDIRWKDNGQHIANLVSVDRD 589

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I      +   + + +L +++ G  KR+    ++   R  K + A  +        +V
Sbjct: 590 DCILRAMPVKEFSESESLLFITKNGMAKRSQLSLYQAQ-RFSKPLMALKLKA---DDEVV 645

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +V   +   ++ + +  G  +     EI +  +   GV   +   D++VV        + 
Sbjct: 646 SVMRTDGKKELFIATHLGYGLWFDEEEISLVGQRAAGVKAINLKDDDKVVDAFTFEPEDK 705

Query: 903 VD 904
           VD
Sbjct: 706 VD 707


>gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
 gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1]
          Length = 833

 Score =  669 bits (1726), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/919 (31%), Positives = 483/919 (52%), Gaps = 124/919 (13%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNK 69
           E +       I D M+++Y+ YA++VI+GR++PD+RDGLKPV RRIL+ M   +     K
Sbjct: 3   ERKSKTIKNDIVDIMKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+AA+YD + RMAQD+  R  LI+GQGNFGS+DGD PAA R
Sbjct: 63  PYKKSARIVGDVIGKYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K A  +L D+ KDTVDF PNYDGS +EP VL  + PN+L+NG  GIAVGMATN
Sbjct: 123 YTEIRMTKIAEEMLKDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNP----------------------DIDLDALMEIIRGPDFPT 227
           IP HNL EV+  C+ ++ N                       +   + +M I++ PDFPT
Sbjct: 183 IPPHNLKEVIKACLYLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPT 242

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
           G +I+    I   Y  G GSI I+          +++QI++TE+PY VNK+ ++ KIA+L
Sbjct: 243 GGIIINSKDIPKIYRNGTGSIKIKAKIE-----VNKDQIIITELPYMVNKSDLIIKIADL 297

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
            +  +I  IAD++DES +   R+VI+L++    +++LNQLY+YT L + FS N V +   
Sbjct: 298 SKSNKIQGIADIKDESTK-DIRIVIKLRKKTDPNIVLNQLYKYTQLTTTFSCNFVGIYKN 356

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           KP +  ++ +L  F++FR +++ RRT++LL K +++ H L GL IAV N+D  V+II+ +
Sbjct: 357 KPYQLNILDLLFNFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTA 416

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
            N   A ++LM++                            L ++Q   IL +RL RLT 
Sbjct: 417 KNTTDATQKLMKK--------------------------YKLDDIQVNEILNMRLQRLTS 450

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLL 525
           L  + + NE       I+   +IL+S  + + +I  EL  ++     +  R T++ +  +
Sbjct: 451 LEIEKLLNEYQETKENIQTYKEILNSYDKQIELIINELHDLQKNYCKNDKRLTKLEDEDI 510

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
             + ++ I    +++  +  G++K+  +       +  K      ++  D    +   + 
Sbjct: 511 SFDIKNLIPDNPVIIIYTDDGFIKKENI------SKVTKTGKTTNLQKNDSAKFIINTTN 564

Query: 586 HTSVLFFSSLGFVYKEKVWRLPI-GSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           H  +L F+  G +Y   V+ +P  GS  ++G  + N++ LN  ++I  ++     E+ ++
Sbjct: 565 HKKLLLFTDTGKLYYLNVYDIPETGSGNSKGTHISNLIKLNTNDKIV-LIRTQIHENEYS 623

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKL 702
           N  +V  T+ G V+R  L ++     +G + +KL+S D++L V      +EN +L+ +K 
Sbjct: 624 NYDMVCITEKGLVKRTSLEEYKNSK-NGSLVLKLNSDDKLLKVFFINKQEENYLLMLSKQ 682

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            + + F I+ +R  A R + GV G+ L  + D+++  AI+                    
Sbjct: 683 SKYIIFNINQVRTVA-RLAKGVVGMLLNNENDKIVDCAIITKP----------------- 724

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL-TVSEKGFGKRTSSYDFRIS 820
                                          L+   +++L T++ KGF K T   ++ + 
Sbjct: 725 ------------------------------MLENPNEYLLCTITNKGFIKLTPLEEYSVQ 754

Query: 821 NRSGKGIRATDVSKINEIGA--LVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRAT 877
           NR  KG     V+  N+ G   LV +   N   +  IL+++ G LI++ +N I + +R +
Sbjct: 755 NRKTKGSYVMKVT--NKTGEPILVQILAKNSKTNNCILITNTGQLIKIDINNISVTNRVS 812

Query: 878 KGVVI-FSTAKDERVVSVE 895
            G  I +    +  +VS  
Sbjct: 813 TGQPIEYKLEHNNYIVSAT 831


>gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228]
          Length = 794

 Score =  669 bits (1725), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/888 (34%), Positives = 491/888 (55%), Gaps = 102/888 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  ++I D+M+++YL Y+++VI+GRA+PD+RDGLKPVHRRILF   ++G+  +K + 
Sbjct: 2   KEEIYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAHK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ GEV+GK+HPHG++A+YDA+ RMAQD++ R  LI+GQGNFGS+DGD  AA RYTE
Sbjct: 62  KSARLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + A  LL ++ + TV+F  N+DGS QEP VL ++ PN+LVNG  GIAVGM+T+IP 
Sbjct: 122 TKLTEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           HNLGEV+D  V ++D P+  L+ ++   + GPDFPTGA I+G  GIK AY +G+G I +R
Sbjct: 182 HNLGEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASIIGNDGIKAAYQSGKGKITLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IEK     + +++TEIPYQVNK+ ++E+IAELV + +I  ++DLRDESD++G R+V
Sbjct: 242 AKSKIEKKKR-HKNLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIRIV 300

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK  A  ++ LN+LY+YT+LQ+ F +N++A+N  KP    L+ IL  F+ FR+E++  
Sbjct: 301 IELKANADPELTLNRLYKYTNLQNNFRINLLAINDKKPVVMGLLEILNHFLDFRKEIIKN 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            +KY L KA +R H+L GL  A+  LD V+ +IR S     A++E   +      I    
Sbjct: 361 HSKYNLTKAENRYHILEGLKKAIDQLDIVIDVIRNSE----AKKEAKAKLVKKLKI---- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q ++ILE++L RL G+  + +  E   L  +IK   +IL
Sbjct: 413 ------------------SERQAQSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ++   L  +++ EL  +K +   PRRT I   +   ++   D I  +  ++++S+ G +K
Sbjct: 455 NNEEELKSVLRAELKEIKKKFSDPRRTDIIADDSKAEITKNDLIKEKKAIISLSYRGIIK 514

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+  R              D++      S+   +LFFS+ G VY  +V  +   
Sbjct: 515 RN--DEYKNLRTA----------KNDYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEH 562

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
              A G+ L   L +   E I  +    ++++   N Y  F T++G ++R ++ ++ + N
Sbjct: 563 HGLATGENLSKYLQIPINESIIDLNILSKNKAKTKNKYYTFVTENGLIKRTEVDEY-RTN 621

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            S   A+KLD  D++++VE   + +D+++ +K G  +RF  S+     GRN++G R I+L
Sbjct: 622 YSHIRAIKLDE-DQLVNVEKTDEASDLIVISKKGYLIRFKGSSF-STTGRNTLGSRAINL 679

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+V+                                                     
Sbjct: 680 IKNDKVL----------------------------------------------------- 686

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    FI+++SE G   +    +F    R+GKG R       N+   L        
Sbjct: 687 YFSTFENNSFIISISENGRANKIKLSEFETQKRNGKGNRIFS----NKSYKLAGAVKAKA 742

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            D+I++ +  G +  + V++I   S A     I      E++ +V++I
Sbjct: 743 GDKILIAAKNGEIYEIEVDQIPETSPAGNMYQITKELDFEKITTVKKI 790


>gi|315302928|ref|ZP_07873659.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
 gi|313628701|gb|EFR97103.1| DNA topoisomerase IV, A subunit [Listeria ivanovii FSL F6-596]
          Length = 819

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/903 (31%), Positives = 474/903 (52%), Gaps = 90/903 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K EL  +K +  TPRRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNG-----KELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G  + ++ S              +  +       +F TK+G  +++ ++++   
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIR--SVIDIPAFTEEHRFLFVTKNGMTKQSLITNYKPQ 629

Query: 669 NRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S   +A+KL   DE+L+V       DI L TK G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKSMMAIKLKDDDELLNVHLIDGTEDIFLATKNGYGLRYPITEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+V+   ++   D                                          
Sbjct: 689 NLKQDDKVVGGIVLSSNDP----------------------------------------- 707

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     + IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 708 ----------KHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D + + ++   ++ + V  +R+  R + G  +     +   VS+  +   EI D  +
Sbjct: 757 DNKDHLFIETNTDQIVEIDVANLRVTDRYSNGSFVLDETMEGEPVSI-WLDIPEIKDTTD 815

Query: 908 STE 910
           S E
Sbjct: 816 SKE 818


>gi|47097247|ref|ZP_00234808.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898548|ref|ZP_05258472.1| DNA topoisomerase IV subunit A [Listeria monocytogenes J0161]
 gi|254911961|ref|ZP_05261973.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
 gi|254936288|ref|ZP_05267985.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|47014372|gb|EAL05344.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608878|gb|EEW21486.1| DNA topoisomerase IV [Listeria monocytogenes F6900]
 gi|293589924|gb|EFF98258.1| DNA topoisomerase IV [Listeria monocytogenes J2818]
          Length = 819

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/904 (32%), Positives = 480/904 (53%), Gaps = 92/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   ++                                             
Sbjct: 688 INLKQDDIVIGGIVL--------------------------------------------- 702

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 +  +++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 703 ------MLNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D +
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSI-WLAIPEIKDTS 814

Query: 907 ESTE 910
           ++ E
Sbjct: 815 DAKE 818


>gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
 gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens NCTC 8239]
          Length = 979

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/956 (32%), Positives = 467/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                LV V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELVNVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 153/455 (33%), Gaps = 19/455 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +         KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SVA----DKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVR 535
           L+       + + I      LL  +       ++       T  +   + + E E     
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698

Query: 536 EDMVVTV-----SHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTS 588
              V  V     + +  ++ V    Y+    G   KG             +   V++  +
Sbjct: 699 ILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRN 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ FS+ G V+K   + L           +       + E I  + P  E      +L+V
Sbjct: 759 IIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +      
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYE 933

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                +  K  + V     + + +  +     IL 
Sbjct: 934 KLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|224500821|ref|ZP_03669170.1| DNA topoisomerase IV subunit A [Listeria monocytogenes Finland
           1988]
          Length = 819

 Score =  668 bits (1723), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/904 (32%), Positives = 480/904 (53%), Gaps = 92/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EGKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   +++  +                                         
Sbjct: 688 INLKQDDIVIGGIVLMPNE----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 707 ----------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D +
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSI-WLAIPEIKDTS 814

Query: 907 ESTE 910
           ++ E
Sbjct: 815 DAKE 818


>gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
 gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13]
 gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens D str. JGS1721]
          Length = 979

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/956 (32%), Positives = 467/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                LV V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELVNVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 153/455 (33%), Gaps = 19/455 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +         KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SVA----DKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVR 535
           L+       + + I      LL  +       ++       T  +   + + E E     
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698

Query: 536 EDMVVTV-----SHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTS 588
              V  V     + +  ++ V    Y+    G   KG             +   V++  +
Sbjct: 699 ILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRN 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ FS+ G V+K   + L           +       + E I  + P  E      +L+V
Sbjct: 759 IIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +      
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYE 933

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                +  K  + V     + + +  +     IL 
Sbjct: 934 KLILESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|16803327|ref|NP_464812.1| DNA topoisomerase IV subunit A [Listeria monocytogenes EGD-e]
 gi|224501768|ref|ZP_03670075.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-561]
 gi|254829956|ref|ZP_05234611.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 10403S]
 gi|284801672|ref|YP_003413537.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284994814|ref|YP_003416582.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
 gi|16410703|emb|CAC99365.1| parC [Listeria monocytogenes EGD-e]
 gi|21328243|gb|AAM48489.1| DNA topoisomerase IV subunit A [Listeria monocytogenes]
 gi|284057234|gb|ADB68175.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5578]
 gi|284060281|gb|ADB71220.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 08-5923]
          Length = 819

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/904 (32%), Positives = 480/904 (53%), Gaps = 92/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   +++  +                                         
Sbjct: 688 INLKQDDIVIGGIVLMPNE----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 707 ----------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D +
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSI-WLAIPEIKDTS 814

Query: 907 ESTE 910
           ++ E
Sbjct: 815 DAKE 818


>gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
 gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484]
          Length = 764

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/848 (35%), Positives = 441/848 (52%), Gaps = 123/848 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V I +E++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M  MG+   K +VK 
Sbjct: 2   DIIEVPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G V+G YHPHG+ A+YDAL RMAQD+++   LI GQGNFGSVDGDPPAA RYTE +
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAK 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  LL+D+ K+TVDF PN+DGS +EP VL +++PN+L NG  GIAVG+AT+IP HN
Sbjct: 122 LSRYALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV    + +  NP +    +M II+GPDFPTG ++     +   Y  GRG + IR  +
Sbjct: 182 LSEVCKAVIELAKNPHMTTQEIMRIIKGPDFPTGGIVENYQELLEFYEKGRGQVRIRAKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EK +G REQIVVTEIPYQVNKA ++++IAELVR+ R+ +I+D+RDESD++G R+VIEL
Sbjct: 242 HVEKVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR AS + +L +LY+ T+L+  F +N V L   +P +  +  +L+ F+  R EV++RR++
Sbjct: 302 KRDASGEKVLEKLYKLTALRKNFPINFVVLIDGEPRQVGIKTLLQEFIRHRLEVILRRSR 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL KA +R H++ GL  A+ANLD V+  IR S +   AR +L ++              
Sbjct: 362 YLLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKK-------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+ +Q  A+L++RL RLT L R+ +  E   L  +++    ++ S 
Sbjct: 408 ------------YGLTPLQAEAVLDMRLQRLTSLERNKLEEEERGLRQKVEYYRRVIGSE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + I+ +E+  +   L + RRT +         E       + V +   G +      
Sbjct: 456 DERVRILIEEMEELIRTLPSVRRTFVEG------LEGEDKTGSITVVIYQNGRI------ 503

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                         V   +E  V ++  V     +   SS G VY     +   GS    
Sbjct: 504 ------------LPVTSMEEGVVVNILEVPYDDGLFLVSSKGRVYWIGGSQALQGSR--- 548

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                  + L +               S  +  +V AT  G +++  L DF      G  
Sbjct: 549 -------IDLKEQGEYV----VGAFVRSQASDRLVLATAMGYIKKIPLVDFE-YRAQGMP 596

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
            +KL   DEI+ +    +E D+LL T  G+ +RFP+  +   AG  S GV GI L   D+
Sbjct: 597 IIKLAEGDEIVRLLQSPEEGDLLLYTHRGRVLRFPVKDVPP-AGVGSKGVVGIKLEDKDR 655

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+ +  +L A                                                  
Sbjct: 656 VVGVKAILGAK------------------------------------------------- 666

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
               +IL ++E G  K+ SS +  + +R  KGI     S    +  +V +  V +   ++
Sbjct: 667 ----YILVITEDGKVKKVSSQEIPVRSRGSKGINVL-FSSRERLADVVPMGEVVN---VM 718

Query: 855 LVSDKGTL 862
           + +  G +
Sbjct: 719 VATLSGKV 726



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS--YDFRISNRSG 824
           G ++ +   + D   +G          +  ++ +L  +  G+ K+     +++R      
Sbjct: 539 GGSQALQGSRIDLKEQGEYVVGAFVRSQASDRLVL-ATAMGYIKKIPLVDFEYRAQG--- 594

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                  + K+ E   +V +    +   ++L + +G ++R PV ++  A   +KGVV   
Sbjct: 595 -----MPIIKLAEGDEIVRLLQSPEEGDLLLYTHRGRVLRFPVKDVPPAGVGSKGVVGIK 649

Query: 885 TAKDERVVSVERI 897
               +RVV V+ I
Sbjct: 650 LEDKDRVVGVKAI 662



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 29/255 (11%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-----------ENDILLTTKLGQC 705
           VRR  +      +++G I + +     IL V +  +           ++ + L +  G+ 
Sbjct: 476 VRRTFVEGLEGEDKTGSITVVIYQNGRILPVTSMEEGVVVNILEVPYDDGLFLVSSKGRV 535

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                S           G R I L + G+ V+   +   A                    
Sbjct: 536 YWIGGSQ-------ALQGSR-IDLKEQGEYVVGAFVRSQASDRLVLATAMGYIKKIPLVD 587

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                + +  +K     E     +       +E  +L  + +G   R    D   +    
Sbjct: 588 FEYRAQGMPIIKLAEGDEIVRLLQ-----SPEEGDLLLYTHRGRVLRFPVKDVPPAGVGS 642

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           KG+    +   +    +V V  +     I+++++ G + +V   EI + SR +KG+ +  
Sbjct: 643 KGVVGIKLEDKDR---VVGVKAILGAKYILVITEDGKVKKVSSQEIPVRSRGSKGINVL- 698

Query: 885 TAKDERVVSVERIRE 899
            +  ER+  V  + E
Sbjct: 699 FSSRERLADVVPMGE 713


>gi|315282118|ref|ZP_07870598.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
 gi|313614235|gb|EFR87899.1| DNA topoisomerase IV, A subunit [Listeria marthii FSL S4-120]
          Length = 819

 Score =  668 bits (1722), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/885 (32%), Positives = 471/885 (53%), Gaps = 92/885 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K
Sbjct: 2   TNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA R
Sbjct: 62  GFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+
Sbjct: 122 YTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V
Sbjct: 182 IPPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R
Sbjct: 242 VRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++
Sbjct: 302 IAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINRKRPELMGIIPMLDAYIDHQKEII 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+               
Sbjct: 362 TKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK--------------- 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      +        SE Q  AI+ L+L RLT     ++++E  SL  +I     
Sbjct: 407 -----------LNLQTNYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAASLAEQISVLEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GY
Sbjct: 456 ILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR     Y A          + M++ D    +  +++  S+L F+S G      V  LP
Sbjct: 516 VKRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 570

Query: 608 IGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++ 
Sbjct: 571 DIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYK 627

Query: 667 QINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               S   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+
Sbjct: 628 PQRYSKSMMAIKLKDDDELLSVHLIDGSEDIFLATKNGYGLRYSITEIPESGARTA-GVK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I+L + D V+   ++   +                                        
Sbjct: 687 AINLKQDDIVVGGVVITPNE---------------------------------------- 706

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      ++ IL  +++G  K+  + +F   +R+ +G+      K N     + + 
Sbjct: 707 -----------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLT 754

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
             ++ND + + ++   ++ + VN +RI  R + G  +   T + E
Sbjct: 755 LADNNDHLFIETNTDQVVEIDVNNLRITDRYSNGSFVLDETMEGE 799



 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 88/255 (34%), Gaps = 56/255 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R     +   N +    + +   D  + ++     + +LL T  G  + 
Sbjct: 507 IVSVTKEGYVKRTSQRSYAASNGAE---LAMKEADHAIFIQKMNSLDSLLLFTSKGNFIY 563

Query: 708 FPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +             I     GD V                               
Sbjct: 564 RPVHELPD-----------IRWKNLGDHV------------------------------- 581

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                 + L +D S    I      +   +E+  L V++ G  K+++  +++   R  K 
Sbjct: 582 ------SHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAITNYKPQ-RYSKS 634

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A  +        L++V  ++ ++ I L +  G  +R  + EI  +   T GV   +  
Sbjct: 635 MMAIKLKD---DDELLSVHLIDGSEDIFLATKNGYGLRYSITEIPESGARTAGVKAINLK 691

Query: 887 KDERVVSVERIRESE 901
           +D+ VV    I  +E
Sbjct: 692 QDDIVVGGVVITPNE 706


>gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
 gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens B str. ATCC 3626]
          Length = 979

 Score =  667 bits (1721), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/956 (32%), Positives = 467/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKYA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                LV V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELVNVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 153/455 (33%), Gaps = 19/455 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +         KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SVA----DKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVR 535
           L+       + + I      LL  +       ++       T  +   + + E E     
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698

Query: 536 EDMVVTV-----SHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTS 588
              V  V     + +  ++ V    Y+    G   KG             +   V++  +
Sbjct: 699 ILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRN 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ FS+ G V+K   + L           +       + E I  + P  E      +L+V
Sbjct: 759 IIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +      
Sbjct: 875 FSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYE 933

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                +  K  + V     + + +  +     IL 
Sbjct: 934 KLILESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124]
 gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
 gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens ATCC 13124]
 gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens CPE str. F4969]
          Length = 979

 Score =  667 bits (1720), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/956 (32%), Positives = 467/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKLPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDEIIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                LV V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELVNVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFLATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEDIDD 915



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 153/455 (33%), Gaps = 19/455 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKLPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +         KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SVA----DKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVR 535
           L+       + + I      LL  +       ++       T  +   + + E E     
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698

Query: 536 EDMVVTV-----SHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTS 588
              V  V     + +  ++ V    Y+    G   KG             +   V++  +
Sbjct: 699 ILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRN 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ FS+ G V+K   + L           +       + E I  + P  E      +L+V
Sbjct: 759 IIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDEIIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +      
Sbjct: 875 FLATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEDIDDKTLEAYNDYKKELTSNYE 933

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                +  K  + V     + + +  +     IL 
Sbjct: 934 KLILESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|290894159|ref|ZP_06557130.1| parC protein [Listeria monocytogenes FSL J2-071]
 gi|290556289|gb|EFD89832.1| parC protein [Listeria monocytogenes FSL J2-071]
          Length = 819

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/904 (32%), Positives = 480/904 (53%), Gaps = 92/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   +++  +                                         
Sbjct: 688 INLKQDDIVIGGIVLMPNE----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     ++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 707 ----------QKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+  +   EI D +
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSI-WLAIPEIKDTS 814

Query: 907 ESTE 910
           ++ E
Sbjct: 815 DAKE 818


>gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
 gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Synechococcus sp. PCC 7335]
          Length = 803

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/884 (34%), Positives = 478/884 (54%), Gaps = 98/884 (11%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRRI++ M ++G+  ++ + KCAR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152
           YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE RL +  H  LL ++ + TVD
Sbjct: 61  YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+D S QEP+VL A+ PN+++NG  GIAVGMATNIP HNLGEVVDG +A++D P++ 
Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD-----REQIV 267
            ++L ++I GPDFPTGA I+   GI +AY TGRGSI IRG+++ E+         R+ IV
Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTKGIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAIV 240

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA+ + KIA LV + RI  I+D+RDESDR+G RVVIELKR A   +ILN L
Sbjct: 241 VTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILNDL 300

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y+ T+LQ+ F   M+A+   +P + +L  IL+AF+ FRE  ++R+  + L + R+R H++
Sbjct: 301 YKMTALQTNFGALMLAIEDGQPRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFHIV 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA+ +LD+++ I+R +P+  TA+ E+++                            
Sbjct: 361 EGLLIALDSLDDIIDILRNAPDGTTAKVEMIE--------------------------AF 394

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LS+ Q  +IL + L RLTGL +  +R+E + L   I +   ++S R+ L+  +K+EL +
Sbjct: 395 DLSDRQADSILAMPLRRLTGLEQQKLRDESDELDERINQLETLVSDRNVLMKSLKKELRA 454

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDC-------IVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +K +    RRTRI      +++E            E+ ++  +  GYV+R      R +R
Sbjct: 455 LKKKFGDRRRTRIQTEAERVKEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKT-RTRR 513

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           +   G +  +   +D      I +    VL  +  G  +   V  +PI   Q++G  LI 
Sbjct: 514 KDASGPTKALEEFDDVTIQTEITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIG 573

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L    G    +++       +     ++  T  G V+R   S+   +   G  A+KL  
Sbjct: 574 LLPDAVGSTPDSVVTQIVLSEARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKD 633

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMA 739
            D +         +D++L +  G+ +RF I         R + G +GI L K ++++   
Sbjct: 634 DDLLKHAFIAPMGSDLVLASSGGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSERLVGCI 693

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            V                                                      K+  
Sbjct: 694 PVSP----------------------------------------------------KDTL 701

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL VS KG+GKR     F+ SNR G G ++   +   +  ALV++        + +++D+
Sbjct: 702 IL-VSNKGYGKRILVSTFKTSNRGGIGSQSFKFNL--KSDALVSLNVAVPEANLTVLTDQ 758

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS--VERIRESE 901
           G   ++ ++ + +  R+     + +  + E +V   V  + ESE
Sbjct: 759 GRAAKIAIDSVPLQGRSQPCARLVTPERTETIVETLVTDMPESE 802


>gi|254932396|ref|ZP_05265755.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|293583952|gb|EFF95984.1| DNA topoisomerase IV subunit A [Listeria monocytogenes HPB2262]
 gi|328475130|gb|EGF45914.1| DNA topoisomerase IV subunit A [Listeria monocytogenes 220]
          Length = 819

 Score =  666 bits (1719), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/904 (32%), Positives = 478/904 (52%), Gaps = 96/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+L+V       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   ++                                             
Sbjct: 688 INLKQDDIVIGGIVL--------------------------------------------- 702

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 +  +++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 703 ------MPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE----SE 901
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+   I E    S+
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIWLAIPEIKDTSD 815

Query: 902 IVDE 905
             DE
Sbjct: 816 AKDE 819


>gi|46907514|ref|YP_013903.1| DNA topoisomerase IV subunit A [Listeria monocytogenes str. 4b
           F2365]
 gi|46880782|gb|AAT04080.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes serotype 4b
           str. F2365]
          Length = 819

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/904 (32%), Positives = 478/904 (52%), Gaps = 96/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+L+V       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   ++                                             
Sbjct: 688 INLKQDDIVIGGIVL--------------------------------------------- 702

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 +  +++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 703 ------MPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE----SE 901
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+   I E    S+
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIWLAIPEIKDTSD 815

Query: 902 IVDE 905
             DE
Sbjct: 816 AKDE 819


>gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 648

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 303/651 (46%), Positives = 429/651 (65%), Gaps = 34/651 (5%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRIL+ M+++    +
Sbjct: 2   EDNIFDKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY AL  MAQ+WS R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + +  L  D+ KDTVDF PN+D + +EP VL AR+PN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVID-----NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV+   V +ID     N +  ++ +++I++GPDFPTGA+ILG  GI+ AY T
Sbjct: 182 NIPPHNLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTRGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVR+K+I  I DL D+S
Sbjct: 242 GRGKIRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQS 301

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +R+G R+ IEL+R  +A+V+LNQLY++T LQ  F V M+AL   +P+   ++ +L  ++ 
Sbjct: 302 NREGMRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLALVNNEPKVMNILEMLNYYLR 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            +EEVV RRTKY LNKA +RAH+L GL IA+ N+DEV+RIIR S N + A+  L++    
Sbjct: 362 HQEEVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIE---- 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++VQ +AI+++RL  LTGL R+ + NE   L   
Sbjct: 418 ----------------------AFQLTDVQAQAIVDMRLRALTGLEREKLENEYKELMER 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+ R  LLG+IK+E+L +  +    RRT I    LD+  ED I  +D+V+T++
Sbjct: 456 IGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLIPEQDVVITMT 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            LGY+KR+    +++Q RGGKG  G+   +ED+V +LF+ STH  ++FF++ G VY+ K 
Sbjct: 516 KLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKG 575

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
           + +P     ARG A+IN+L L   E+IT ++P  E E   +  Y+  ATK 
Sbjct: 576 YEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYE---DGKYLFMATKK 623



 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 97/235 (41%), Gaps = 19/235 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLA 730
           + LD+ DE++ +   ++        K G    F ++ ++         R   G+    L 
Sbjct: 390 IALDNIDEVIRIIRNSKNAQ---AAKEGLIEAFQLTDVQAQAIVDMRLRALTGLEREKL- 445

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + +    M  +    A   +R   +  +  +  +ISG   +              +E+  
Sbjct: 446 ENEYKELMERIGELRAILADRKLLLGVIKEEILVISGKYGDDRRTSIGFDELDLSTEDLI 505

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            E    +  ++T+++ G+ KR ++  F+  NR GKGI+     + + +  L   F  + +
Sbjct: 506 PE----QDVVITMTKLGYIKRMTTDTFKSQNRGGKGIKGMQTIEEDYVEEL---FMTSTH 558

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESEI 902
           + I+  ++ G + R+   EI  A R  +G  I +      DE++ ++  IRE E 
Sbjct: 559 NYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQLMPDEKITAMIPIREYED 613


>gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39]
          Length = 875

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 317/935 (33%), Positives = 473/935 (50%), Gaps = 134/935 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 11  EVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 130

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    +  LL  +G+ TVDF  N+D S QEP VL A+ P +++NG  GIAVGMATNIP H
Sbjct: 131 LATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNPD+    LM++I GPDFPTG  I+   GIK AY +GRGSIV+RGV
Sbjct: 191 NLGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGV 250

Query: 254 SHIEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+         +  IVVTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G 
Sbjct: 251 AKIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A+ +V+L+ LY++T L S F    +AL   +P + +L  IL+ F+ FRE+ 
Sbjct: 311 RVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR +  L  A  R H++ GL  A++ LDEV+ I+R +P+  +A+  L  R        
Sbjct: 371 LLRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETR-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             +  S  Q  AIL + L RLTGL    ++ E   L  +I+   
Sbjct: 423 ------------------LDFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLR 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-------------------- 528
            +LS RS LL  +K+EL S+K     PRRTRIV                           
Sbjct: 465 RLLSERSELLKSLKKELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATES 524

Query: 529 ---DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                     E+ +V ++  GYV+RV        +         +   +DF    ++ +T
Sbjct: 525 KILRPQLPAVEETLVEMTLRGYVRRVTPHNLSRPQS---REDITIEAIDDFPVTSYLTTT 581

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI---MPFPED--- 639
             +++  + +G  Y   V  +P  S ++RG  LI +LS +  +  +T    +        
Sbjct: 582 AETLVIINRMGKAYPLNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGA 641

Query: 640 -----------------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                             +  +   ++  +  G ++R   +DF+ ++  G   MKL   D
Sbjct: 642 GLQSSPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDND 701

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           E+         + ++L T  G+ +R  I+       GR + G     L K +Q++    +
Sbjct: 702 ELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVGCITL 761

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                                                               +L  +FIL
Sbjct: 762 SSTG------------------------------------------------ELNNKFIL 773

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVNDNDQIILVSDKG 860
            VSE+G+ KR S    + S R G G +       N+    LVA  P    + I  ++ + 
Sbjct: 774 LVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHSRNDACRGLVATTP---GEAIYCLTSEN 830

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ +  + + +  +   G  +      ER++SV 
Sbjct: 831 RMVTLVPDVVPVWGKDGHGDRMVELRSGERILSVV 865


>gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425]
 gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425]
          Length = 839

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/909 (32%), Positives = 453/909 (49%), Gaps = 104/909 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 14  KVIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL RM Q +S R  L++G GNFGSVD DPPAA RYTE R
Sbjct: 74  ARVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETR 133

Query: 135 LQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   AH  LL ++G++TV+F  N+D S QEPVVL ++ P +L+NG  GIAVGMATNIP H
Sbjct: 134 LSPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVVD  +A+ID PD+ +D L+E++ GPDFPTG +I+G  GI+ AY TGRGSI +R V
Sbjct: 194 NLAEVVDALIALIDRPDLSVDQLLELVPGPDFPTGGIIIGTEGIREAYTTGRGSITLRAV 253

Query: 254 SHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + +E+         R  I++TE+PYQVNK+ ++EKIAEL+ + RI  IADLRDESDR+G 
Sbjct: 254 AQMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREGM 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR      +L+QLYR T LQ+ F V M+AL   +P +  L  +L+ F+ FRE  
Sbjct: 314 RIVIELKRETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQPRQMGLKELLEHFLNFREHT 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR ++ L++A+ R H++ GL  A+ NLD V+ ++R + +   A++             
Sbjct: 374 LTRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQ------------- 420

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + LS+ Q  AIL + L RLTGL + ++R E + L  +I++  
Sbjct: 421 -------------TLQSELNLSDRQADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLE 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD-MEDEDCIVREDMVVTVSHLGY 547
            +L SR  LL  +K++L S+K +    R TRI          E+     ++ + +S  GY
Sbjct: 468 TLLGSRHELLKALKKDLRSLKRQYADQRLTRIQTEAEPLPSVEELAADTEVTLELSQRGY 527

Query: 548 V---------KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF----IVSTHTSVLFFSS 594
           V         +R       A+    K       + ++   DL           ++L F+ 
Sbjct: 528 VRCLRGGERGRRNQARSEGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFTQ 587

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y+  +  +P+G  + +G  L+ +L  +  +               +   +V  +  
Sbjct: 588 SGKGYRVDLTAMPLGDRRDKGVPLVTLLPESAQQESIVAQFLC--PPLPSEQQLVLLSAE 645

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G  +R  L DF ++   G    KL   D +  +      +++ + T  G+ +RF    I 
Sbjct: 646 GRAKRISLEDFAEVTARGLSVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFASDEIP 705

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           +  GR ++G + I L K ++++   ++   D                  +  G   ++ +
Sbjct: 706 LM-GRTTLGQQAIRLHKQERLVGAIVLQTYDNLLLVSERGYGKRMPLNAVRLGRLGDLGT 764

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                  + +            E                                   + 
Sbjct: 765 TAIQFVAKPDHLAAIAPAPSNAE-------------------------------VMLFTD 793

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N +  L                         + +I I  +   G ++ +    E++ S 
Sbjct: 794 KNRMANL------------------------SLAQIPIWGKDGSGKLLLNLEVGEKLTSA 829

Query: 895 ERIRESEIV 903
                S   
Sbjct: 830 SVADPSPGE 838


>gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
 gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501]
          Length = 795

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 314/815 (38%), Positives = 478/815 (58%), Gaps = 49/815 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ ITSV I ++M+ SYL Y+++VI+ RA+PD+RDGLKPVHRRIL+   ++G+  NK + 
Sbjct: 3   EQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKPHK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG+AA+YDA+ RMAQ +S R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 63  KSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   +  LL D+ K+T++F  N+DGS QEP VL +R PN+LVNG  GIAVGM+T+IP 
Sbjct: 123 ARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+   + ++++ D+ ++ LME I GPDFPTG  I+G   IK AY TG+G I +RG
Sbjct: 183 HNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKIIGNDEIKKAYRTGKGRITLRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IEK S + E+IV+TEIPYQ+NKA ++E+IA  +++ ++ ++ ++RDESD+ G R+VI
Sbjct: 243 KTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLRIVI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK  A+ ++ILN+LY+YTSLQ+   +NM+AL   +PE   L  IL+ F+ FR EVV RR
Sbjct: 303 ELKSKANTEIILNRLYKYTSLQTTQRINMLALVDQQPEVMDLKTILQHFLDFRREVVTRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K++DR H+L+GL  A+ NLD+V+ IIR S  P TA++ L  +            
Sbjct: 363 TEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDK------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         + +S+ Q  AIL+++L RL  L R  I  EL  L  +I+    IL+
Sbjct: 411 --------------LNVSKKQAAAILDMKLQRLVSLERKKITEELTELKEKIEALNSILN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
            +  +  +IK+EL+ +K+E    R+T I+        ++ D I  ED+V++ S+  Y+KR
Sbjct: 457 EKEVMDDLIKKELIEIKEEYGDERKTEIITDESKAELDESDLIKNEDIVLSFSYNKYLKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                             +     D++TD+   +T   +LFF++ G V+  K  ++P   
Sbjct: 517 TT------------DIENIRAGKGDYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHH 564

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             + G  L + L L   E I  I+   ++       Y+  AT+ G +++    ++     
Sbjct: 565 GLSTGDPLSDYLKLPLDEEIVDILILTDET---KEKYITIATEEGLIKKTVGKEYET-TV 620

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           S   A+ L+  DE++  +    + ++LL TK GQ + F   +I    GRN+ G +GI LA
Sbjct: 621 SSIKAINLNEEDEVIGAKVTDGQQNLLLGTKGGQTIHFSEDSI-SDTGRNTKGSKGIDLA 679

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D+VIS     +  A+ +  I       A R  I+    +  + K   ++  +  E   
Sbjct: 680 ENDKVISF----NLTANSNYVITATADGRATRTDINAYQIQNRNGKGLKTLTNDSYEVID 735

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                KE  +L V+E+G  +     +   + R G+
Sbjct: 736 IITASKEDKLLFVTEEGQLEEAPVSEITETERVGR 770



 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 94/259 (36%), Gaps = 20/259 (7%)

Query: 648 VVFATKHGNVR-----RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE---NDILLT 699
           ++F T  G V      +      +         +KL   +EI+ +   T E     I + 
Sbjct: 543 LLFFTNTGQVHILKTHKIPEHHGLSTGDPLSDYLKLPLDEEIVDILILTDETKEKYITIA 602

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T+ G   +                ++ I+L + D+VI   +    D   +  +      +
Sbjct: 603 TEEGLIKKTVGKEYET----TVSSIKAINLNEEDEVIGAKV---TDGQQNLLLGTKGGQT 655

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                 S       +  +         +     L     +++T +  G   RT    ++I
Sbjct: 656 IHFSEDSISDTGRNTKGSKGIDLAENDKVISFNLTANSNYVITATADGRATRTDINAYQI 715

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            NR+GKG++       N+   ++ +   +  D+++ V+++G L   PV+EI    R  + 
Sbjct: 716 QNRNGKGLKTL----TNDSYEVIDIITASKEDKLLFVTEEGQLEEAPVSEITETERVGRM 771

Query: 880 VVIFSTAKDERVVSVERIR 898
              F    D+++  V R+ 
Sbjct: 772 YTQFKLD-DDKIKEVIRLP 789



 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 9/170 (5%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEG 783
           I   KGD +  +      D           H+    ++            +D     ++ 
Sbjct: 523 IRAGKGDYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHHGLSTGDPLSDYLKLPLDE 582

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            I +      + KE++I   +E+G  K+T   ++  +      + +     +NE   ++ 
Sbjct: 583 EIVDILILTDETKEKYITIATEEGLIKKTVGKEYETT------VSSIKAINLNEEDEVIG 636

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               +    ++L +  G  I    + I    R TKG      A++++V+S
Sbjct: 637 AKVTDGQQNLLLGTKGGQTIHFSEDSISDTGRNTKGSKGIDLAENDKVIS 686


>gi|226223890|ref|YP_002757997.1| DNA gyrase-like protein (subunit A) [Listeria monocytogenes
           Clip81459]
 gi|254824652|ref|ZP_05229653.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|255520560|ref|ZP_05387797.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-175]
 gi|300765324|ref|ZP_07075308.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
 gi|225876352|emb|CAS05061.1| Putative DNA gyrase-like protein (subunit A) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293593890|gb|EFG01651.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-194]
 gi|300514007|gb|EFK41070.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL N1-017]
          Length = 819

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/904 (32%), Positives = 478/904 (52%), Gaps = 96/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+LSV       DI L TK G  +R+ I+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   ++                                             
Sbjct: 688 INLKQDDIVIGGIVL--------------------------------------------- 702

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 +  +++ IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 703 ------MPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE----SE 901
            ++ND + + ++   ++ + V  +RI  R + G  +     +    S+   I E    S+
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIWLAIPEIKDTSD 815

Query: 902 IVDE 905
             DE
Sbjct: 816 AKDE 819


>gi|217964570|ref|YP_002350248.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|217333840|gb|ACK39634.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes HCC23]
 gi|307570866|emb|CAR84045.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes L99]
          Length = 819

 Score =  666 bits (1718), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/904 (32%), Positives = 482/904 (53%), Gaps = 92/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPMSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  ++L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKERDHAIFIQKMNSLDTLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I   +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRAAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+L+V       DI L T+ G  +R+PI+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKDDDELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L +GD V+   ++   DA                                        
Sbjct: 688 INLKQGDIVVGGVVLREGDA---------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 708 -----------KHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIDITL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
            ++ND++++ ++   ++ + V  +R+  R + G  +     +    S+  +   EI D A
Sbjct: 756 ADNNDRLLIETNSEQVVEIEVANLRVTDRYSNGSFVLDETMEGEPTSI-WLDIPEIKDTA 814

Query: 907 ESTE 910
           ++ +
Sbjct: 815 DAKD 818


>gi|228902096|ref|ZP_04066260.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
 gi|228966491|ref|ZP_04127544.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228793213|gb|EEM40763.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228857522|gb|EEN02018.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 4222]
          Length = 807

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 461/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F+S G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I  +   P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWVTVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 58/255 (22%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V  I SL + + +I + +V + +             
Sbjct: 555 SKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFE------------- 601

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                +++FI+ V+  G  K+T    ++
Sbjct: 602 ------------------------------------EEKRFIVFVTRNGMIKKTELNQYK 625

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +  R  +   A ++    +   +V +F  +    I+L +     +    +E+        
Sbjct: 626 VQ-RYSRAFVAVNLK---KGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA 681

Query: 879 GVVIFSTAKDERVVS 893
           GV   +  +D+ V S
Sbjct: 682 GVKAINLKEDDYVAS 696


>gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101]
 gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium
           perfringens SM101]
          Length = 979

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 307/956 (32%), Positives = 466/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+                               +++Q  AILEL L RLTGL     
Sbjct: 419 HENLV--------------------------LKFGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVADKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                LV V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELVNVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFLATAINPMGRIASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 153/455 (33%), Gaps = 19/455 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +         KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SVA----DKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVR 535
           L+       + + I      LL  +       ++       T  +   + + E E     
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698

Query: 536 EDMVVTV-----SHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTS 588
              V  V     + +  ++ V    Y+    G   KG             +   V++  +
Sbjct: 699 ILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRN 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ FS+ G V+K   + L           +       + E I  + P  E      +L+V
Sbjct: 759 IIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELVNVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +      
Sbjct: 875 FLATAINPM-GRIASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYE 933

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                +  K  + V     + + +  +     IL 
Sbjct: 934 KLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1]
 gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1]
          Length = 792

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/828 (34%), Positives = 453/828 (54%), Gaps = 41/828 (4%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +  E++ SYL YA++VI+ RAIPD RDGLKPV RR+L+ M ++ V  +K Y KCAR
Sbjct: 2   EKRPVEVEIKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GE MGKYHPHG+ AIYDAL RMAQD+SLR  L++GQGNFGS+DGD PAA RYTE RL 
Sbjct: 62  IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLT 121

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           + A  +++D+ ++TV+FR N+DG+  EP  L ++ PN+LVNG  GIAVGMATN+  HNL 
Sbjct: 122 QFAEDMMEDIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNLS 181

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E+ D     + N    +D L++I++GPDFP G ++     +  AY TG+G ++++G    
Sbjct: 182 EISDAIKYELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKDLIEAYRTGKGKVIVQGEVDT 241

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
            +      +I++  +PY VNK+ ++E IA L +   I DI D++DESDR G R+VI ++ 
Sbjct: 242 SEER----RIIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVRD 297

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
                +++NQLY +T L++   +  + L G +P+   L  +L  F+  R +V+++R++Y 
Sbjct: 298 EDLKPLVMNQLYEHTDLETTIGIINLVLVGNQPKLLNLKQLLDQFIDHRLDVILKRSRYR 357

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           L K  +R  VL G+  A+ N+D VV I+R S + + A                       
Sbjct: 358 LEKKNERHDVLSGVLTAIDNIDRVVEIVRGSDDVQKASE--------------------- 396

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                    T  L++ Q +AILE+RL RL  + R+ + NEL S+  EI +  +I+ S  +
Sbjct: 397 -----TLKKTFNLNDRQVKAILEMRLQRLVHMERESVVNELKSIEKEIADLKEIIESEQK 451

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            + +++ E+  +K      RRT+I      +   ED I  E+ V+ +S+ G VKRVP+  
Sbjct: 452 RIEVLEGEIDEIKKRYGDKRRTKIKFKEIGERSTEDLIPNEESVIMLSYGGLVKRVPIDE 511

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR+QRRGGKG     M+  D V  +    +H ++ FF+S G V+K K + +P  S  + G
Sbjct: 512 YRSQRRGGKGV-NTSMKISDTVKSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSLG 570

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            +    L L Q ER+T +M  P D       ++V  T++G V++           SG   
Sbjct: 571 VSAGAFLKLQQNERVTEVMKAPADR----GEHLVLVTRNGFVKKTPADPVFDAKSSGLKI 626

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + LD  DE++S  T   + ++ + +  G+   F  S +R   GR+S+GVR + L + D V
Sbjct: 627 ITLDGDDELVSASTIDTDTNMFVLSSKGKGSVFNTSEVRE-TGRSSMGVRSMRLGEEDYV 685

Query: 736 ISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           ++  +V    D        + K  +     +         +  D+   G IS+       
Sbjct: 686 VTAFVVKEGQDILSISEKGFGKRTNLSEFPVHHRGSGGVLVYRDTERTGKISQAIPV--- 742

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            ++  ++ VS      R  + +   ++R   G++  D+   + I A+ 
Sbjct: 743 KEDDEVIIVSMNEKTIRIKASEIPETSRVTSGVKLIDLEDGDRIMAVA 790



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 88/231 (38%), Gaps = 11/231 (4%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAKGDQ 734
           +K     E  + +    E  +++ +  G   R PI   R    R   GV   + ++  D 
Sbjct: 475 IKFKEIGERSTEDLIPNEESVIMLSYGGLVKRVPIDEYRS-QRRGGKGVNTSMKIS--DT 531

Query: 735 VISMA--IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           V S+           +       K  + +    S  +  +++       +     E  + 
Sbjct: 532 VKSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTSLGVSAGAFLKLQQNERVTEVMKA 591

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              + + ++ V+  GF K+T +    + +    G++   +   +    LV+   ++ +  
Sbjct: 592 PADRGEHLVLVTRNGFVKKTPAD--PVFDAKSSGLKIITL---DGDDELVSASTIDTDTN 646

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + ++S KG       +E+R   R++ GV      +++ VV+   ++E + +
Sbjct: 647 MFVLSSKGKGSVFNTSEVRETGRSSMGVRSMRLGEEDYVVTAFVVKEGQDI 697


>gi|218898690|ref|YP_002447101.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
 gi|218545498|gb|ACK97892.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9842]
          Length = 807

 Score =  666 bits (1717), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 461/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F+S G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I  +   P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWVTVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 81/255 (31%), Gaps = 58/255 (22%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V  I SL + + +I + +V + +             
Sbjct: 555 SKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFE------------- 601

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                +++FI+ V+  G  K+T    ++
Sbjct: 602 ------------------------------------EEKRFIVFVTRNGMIKKTELNQYK 625

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +  R  +   A ++    +   +V +F  +    I+L +     +    +E+        
Sbjct: 626 VQ-RYSRAFVAVNLK---KGDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA 681

Query: 879 GVVIFSTAKDERVVS 893
           GV   +  +D+ V S
Sbjct: 682 GVKAINLKEDDYVAS 696


>gi|154795735|gb|ABS86855.1| gyrase A [Mycobacterium avium subsp. paratuberculosis]
          Length = 718

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/801 (37%), Positives = 437/801 (54%), Gaps = 92/801 (11%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPA
Sbjct: 1   PDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGM
Sbjct: 61  AMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGM 120

Query: 187 ATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           ATNIP HNLGE+ +     +DN     +  L A+ME ++GPDFPT  +I+G  GI +AY 
Sbjct: 121 ATNIPPHNLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGTQGIADAYK 180

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IA+ VR+ ++  I+++ D+
Sbjct: 181 TGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAKQVRDGKLAGISNIEDQ 240

Query: 303 -SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            SDR G R+VIELKR A A V+LN LY++T LQ+ F  NM+A+    P    L  +++ +
Sbjct: 241 SSDRVGLRIVIELKRDAVAKVVLNNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRHY 300

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR+ L++  
Sbjct: 301 VDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIE-- 358

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + + E+Q +AIL+++L RL  L R  I ++L  + 
Sbjct: 359 ------------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIE 394

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI +  DIL+   R  GI++ EL  + ++    RRTRIV    D+ DED I RED    
Sbjct: 395 AEIADLEDILAKPERQRGIVRDELAEIVEKHGDARRTRIVAADGDVSDEDLIAREDXXXX 454

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
                         YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ 
Sbjct: 455 XXXXXXXXXXXXXXYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRA 514

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K + LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++ K
Sbjct: 515 KAYELPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRNGLVKKTK 571

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGR 719
           L+DF      G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +R   GR
Sbjct: 572 LTDFDSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM-GR 630

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV+G+     D ++S+ +V                                      
Sbjct: 631 ATSGVQGMRFNADDYLLSLNVVREGT---------------------------------- 656

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                              ++L  +  G+ KRT+  ++ +  R GKG+      +    G
Sbjct: 657 -------------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR--RG 695

Query: 840 ALVAVFPVNDNDQIILVSDKG 860
            LV    V+++ ++  ++  G
Sbjct: 696 RLVGALIVDEDSELYAITSGG 716



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 10/186 (5%)

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD---ADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R   GV+G  L + D V    +    D       +   Y                +  + 
Sbjct: 474 RGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVAN 533

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 E  I++           +++  +  G  K+T   DF  SNRSG GI A ++   
Sbjct: 534 LLAFQPEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDF-DSNRSG-GIVAINLRD- 590

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVS 893
                LV     +  D ++LVS  G  IR    +  +R   RAT GV       D+ ++S
Sbjct: 591 --NDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNADDYLLS 648

Query: 894 VERIRE 899
           +  +RE
Sbjct: 649 LNVVRE 654



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 78/231 (33%), Gaps = 12/231 (5%)

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQ 734
           L   D +     C+  + IL  T  G+  R     +   A R + G    +L      ++
Sbjct: 484 LKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYEL-PEASRTARGQHVANLLAFQPEER 542

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +    ++     +    +         ++    D +   S    +    +  E     L 
Sbjct: 543 I--AQVIQIRSYEDAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDNDELVGAVLC 600

Query: 795 LKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
             E  +L VS  G   R S+ D   R   R+  G++       N    L+++  V +   
Sbjct: 601 SAEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF---NADDYLLSLNVVREGTY 657

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGV-VIFSTAKDERVVSVERIRESEI 902
           +++ +  G   R  + E  +  R  KGV  +    +  R+V    + E   
Sbjct: 658 LLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDEDSE 708



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +R   R GKG++   +    +   +V  F V + +D I+  + +G + R    E+  ASR
Sbjct: 469 YRSQKRGGKGVQGAGL----KQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASR 524

Query: 876 ATKGVVIFST---AKDERVVSVERIRESEI 902
             +G  + +      +ER+  V +IR  E 
Sbjct: 525 TARGQHVANLLAFQPEERIAQVIQIRSYED 554


>gi|228909406|ref|ZP_04073231.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|228940681|ref|ZP_04103244.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973599|ref|ZP_04134181.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980157|ref|ZP_04140471.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228779515|gb|EEM27768.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis Bt407]
 gi|228786060|gb|EEM34057.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818925|gb|EEM64987.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228850183|gb|EEM95012.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis IBL 200]
 gi|326941315|gb|AEA17211.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 807

 Score =  665 bits (1716), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 461/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKILELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F+S G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 80/255 (31%), Gaps = 58/255 (22%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V  I SL + + +I   +V + +             
Sbjct: 555 SKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------------- 601

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                +++FI+ V+  G  K+T    ++
Sbjct: 602 ------------------------------------EEKRFIVFVTRNGMIKKTELNQYK 625

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +  R  +   A ++    +   +V +F  +    I+L +     +    +E+        
Sbjct: 626 VQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA 681

Query: 879 GVVIFSTAKDERVVS 893
           GV   +  +D+ V S
Sbjct: 682 GVKAINLKEDDYVAS 696


>gi|67921390|ref|ZP_00514908.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
 gi|67856502|gb|EAM51743.1| DNA topoisomerase (ATP-hydrolyzing) [Crocosphaera watsonii WH 8501]
          Length = 838

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/906 (32%), Positives = 454/906 (50%), Gaps = 112/906 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  EIIPTALHAEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A   +L ++ +  VDF  N+D S QEPVVL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 132 LSPIADQSMLTEISEAIVDFSSNFDNSQQEPVVLPAQLPNLLLNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG + +IDNP++  + L +II GPDFPTG  I+   GI+ AY  G+G I +RGV
Sbjct: 192 NLGEVVDGLIGLIDNPELSDEKLWKIIPGPDFPTGGEIINSQGIEEAYRHGKGIIPVRGV 251

Query: 254 SHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             I++          R  I+VTE+PYQVNK+A +EKIA+LV   R+  IAD+RDESDR G
Sbjct: 252 VKIQRMDVGKKRRKERTAIIVTELPYQVNKSAWIEKIADLVNNGRLDGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A  +L +LY+ T+LQ  F   M+AL   +P + +L  +L+ F+ FRE+
Sbjct: 312 MRVVIELKRDAVAKTVLKELYKKTALQQNFGAIMLALLDNQPCQLSLRQLLEEFLKFRED 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+    L + ++R H+L GL I++ +LD  + I+R + +  TA+ +           
Sbjct: 372 TLTRQYNNELQECQNRLHLLQGLLISLNDLDRTIDILRHAADGTTAKVQF---------- 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + LSE Q  AIL + + RLTGL R  ++ E + L  +I E 
Sbjct: 422 ----------------QRDLNLSEAQANAILAMPMRRLTGLERQKLQAESDELEGKINEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE-------GLLDMEDEDCIVREDMVV 540
             +L++R   L ++K+EL S+K +    RRTRIV+              +     +D V 
Sbjct: 466 ETLLNNRPEFLKVLKKELRSLKRKYGDTRRTRIVQATAQKSSSTTTSTSQRKSTNKDKVE 525

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL----- 595
           + S+               +   K     +                 + L   S      
Sbjct: 526 SKSNQQTETVTQPFNLFTPQTPPKNAILEMTYQGTICWRSPDDKIPDNHLPIYSEPIQER 585

Query: 596 ---------GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
                    G  Y   V  +P      +  +L+++L  +       ++       +  N 
Sbjct: 586 EQFVVITDIGKAYPVNVADVP--PIDIQPISLLSLLPKSAQRDSKKVISAFFVLENKENH 643

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++  T  G ++R +LS+   +   G + +KL   D +  +    +  ++ +    G+ +
Sbjct: 644 DLLLLTNQGKIKRIQLSELDGLTNRGLVLIKLKDNDYLEFISPTKEGEEVAIAMSSGRVL 703

Query: 707 RFP-ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           RFP +  +    GRN+ G + + L  G+ +IS   +                        
Sbjct: 704 RFPVVDEVIHIMGRNAQGNQALKLRYGENIISCVTLDEN--------------------- 742

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                           + +L VS+ G+ KR +    R++     
Sbjct: 743 --------------------------------KTVLLVSKLGYAKRLNITGLRMTKLGDI 770

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G +A   ++  +  +L+ +   +D+  + L++++   + +   ++RI  +  +G  +   
Sbjct: 771 GTQALQFAQ--KTDSLLGMIKASDDRNVTLLTNQNNTVNIVAKKVRIWGKDGQGDRLIKL 828

Query: 886 AKDERV 891
           +  E +
Sbjct: 829 SNQEVI 834



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVS 833
            K+       +          +   +L ++ +G  KR    +   ++NR   G+    + 
Sbjct: 620 PKSAQRDSKKVISAFFVLENKENHDLLLLTNQGKIKRIQLSELDGLTNR---GLVLIKLK 676

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERV 891
                  L  + P  + +++ +    G ++R PV +  I I  R  +G         E +
Sbjct: 677 D---NDYLEFISPTKEGEEVAIAMSSGRVLRFPVVDEVIHIMGRNAQGNQALKLRYGENI 733

Query: 892 VSVERIRES 900
           +S   + E+
Sbjct: 734 ISCVTLDEN 742


>gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
 gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium
           perfringens E str. JGS1987]
          Length = 979

 Score =  665 bits (1715), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/956 (32%), Positives = 467/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVVDKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +GV+ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                L+ V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELINVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFLATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 153/455 (33%), Gaps = 19/455 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +         KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SV----VDKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVR 535
           L+       + + I      LL  +       ++       T  +   + + E E     
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFTDRN 698

Query: 536 EDMVVTV-----SHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHTS 588
              V  V     + +  ++ V    Y+    G   KG             +   V++  +
Sbjct: 699 ILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFRN 758

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++ FS+ G V+K   + L           +       + E I  + P  E      +L+V
Sbjct: 759 IIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDELIIKVAPINEFGKIGEDLFV 815

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVR 707
            F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  ++
Sbjct: 816 YFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELINVDINFENATVILVTKNGMGIK 874

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +      
Sbjct: 875 FLATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNYE 933

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                +  K  + V     + + +  +     IL 
Sbjct: 934 KLILESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|299536169|ref|ZP_07049483.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
 gi|298728444|gb|EFI69005.1| DNA topoisomerase IV subunit A [Lysinibacillus fusiformis ZC1]
          Length = 812

 Score =  664 bits (1714), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/893 (33%), Positives = 474/893 (53%), Gaps = 89/893 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
              +    + + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K 
Sbjct: 2   SSTEKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW  R +LIE  GN GSVDGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L D+GK TV+F PN+D    EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSAIAAEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L EV+D  +  +D P++ +D LM +++GPDFPTG +I G  GIK AY TGRG I++
Sbjct: 182 PPHALDEVLDAVLMRLDKPNVTVDELMTVMKGPDFPTGGIIQGVDGIKKAYETGRGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E   G +EQIV+TE+PY VNKA +++KI E   +KR+  IA++RDESDR G RV
Sbjct: 242 RAQAVVEPIKGGKEQIVITELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+      IL  L++ T LQ  ++ NM+A++  +P   TL  +L A++A ++EVV 
Sbjct: 302 VIELKKDVPGQGILQYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYIAHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR+H++ GL  A++ LDEV+  IR S + + A+  L ++          
Sbjct: 362 NRSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQEK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +EVQ  AI+ L+L RLT     ++R E + L   I +   I
Sbjct: 412 ----------------FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDELDKLIAKLEGI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           L S ++L+ +IKQELL +K     PRR++I + + +++   +  +  E++VVTV+  GY+
Sbjct: 456 LQSEAKLVRVIKQELLDIKKRFTEPRRSKIEQEIEEIKITLDVLVPSEEVVVTVTKDGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D++     ++T   +L F++ G    + V  LP 
Sbjct: 516 KRTSTRSHAASNG-----QDFAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + +I+   + E I  +  F   E    N YV  ATK G ++R+ L+D+   
Sbjct: 571 IRWKDLGQHISSIVPTGEDESIIAVYGFETFE--QPNTYVFTATKDGQIKRSPLADYAVT 628

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  I  M + + D ++     T + +++LTT     +RFP+  +    G  + GV+GI
Sbjct: 629 RYSKPIKTMNVKAGDAMIYASFVTDDVELMLTTDTAYAIRFPMEEL-PVTGVKTGGVKGI 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  G+ ++ + ++                                              
Sbjct: 688 TLKDGEALVGVNVLQPDVT----------------------------------------- 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     Q+++ V+++G  K+ +  +  ++ R+ +G++     K N    +VAV   
Sbjct: 707 ----------QYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANPH-RIVAVVQA 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            D +Q+++ ++KG    + V  +  A R + G      A D  +  V   ++ 
Sbjct: 756 TDGEQVVIETEKGVQEVIDVQALSRADRHSNGSFKVDIATDGAISHVVTAKKE 808


>gi|228922303|ref|ZP_04085610.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228953864|ref|ZP_04115903.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228805832|gb|EEM52412.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228837358|gb|EEM82692.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 807

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 82/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
 gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C
           str. JGS1495]
          Length = 979

 Score =  664 bits (1713), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/956 (31%), Positives = 467/956 (48%), Gaps = 92/956 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  +  ++  I  + + + M ++YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKNI--EIPKDNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG++++YDA+  +AQ++S R  LI+G GN+GS+
Sbjct: 59  YMLKAFPDKPYYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  +L D+ K+ VD  PNY  S  EP VL ARYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++TNIP HNL EV+DG +A IDN +I    LM  I+GPD PTG V++G   + +A
Sbjct: 179 GIAVGLSTNIPPHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKTLLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE     R  IV+TE PY+ NKA +L+ I+++  +KR       I
Sbjct: 239 YETGEGKVTLRAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K       AD +L  LY+ T LQ   S NMVAL   KPE   
Sbjct: 299 VDIRDESDRTGIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGKPETMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+  +V  +++VV RRTK  L  A  R H++ G   A+  +DEV+  IR S + + A
Sbjct: 359 LKTIISHYVNHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +++Q  AILEL L RLTGL     
Sbjct: 419 HENLVSK--------------------------FGFTDLQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL + S LLG+IK EL  V +     RRT ++E      ++ E+
Sbjct: 453 QKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYGDERRTALIEDESEAKIDLEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED++VT+S+ G++K++PL  Y    R     + +  R+ D++  L   +T  ++  
Sbjct: 513 LIVAEDVMVTLSNEGFIKKIPLKTY---NRSNVDENEIEYREGDYLKFLIKSNTKDTLAI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ K   +     + +G+ L +++          I+     E+   N    F 
Sbjct: 570 FTDKGTVYQIKCNSVSDKKWKDKGERLEDLIR-GLSLEDEKIIALESIENFLPNKCFKFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T +G +++  L  F+    S  +A+KL + D + SV     +++   + + T  G     
Sbjct: 629 TANGLIKKTTLDKFVTA-YSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD----------------------- 745
               +  F  RN +G++ + L  G+Q+ S+  V + +                       
Sbjct: 688 SEPEL-EFTDRNILGIQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSN 746

Query: 746 --------------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                         A  ++   +       +     +  ++        +   ++     
Sbjct: 747 SYEKVKVNSFRNIIAFSNKGKVFKFPAYLLQNTEESNISDLVDGFEKDELIIKVAPINEF 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA--TDVSKINEIGALVAVFPVND 849
               ++ F+   S +G  K+TS  +F        G                L+ V    +
Sbjct: 807 GKIGEDLFVYFFSREGLVKKTSLREF-------LGEFNNQIAYKFKTPKDELINVDINFE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           N  +ILV+  G  I+     I    R   GV   S   D +V+  + I  SE +D+
Sbjct: 860 NATVILVTKNGMGIKFSATAINPMGRVASGVTGISLKDDNKVIFGKVIPPSEGIDD 915



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 68/456 (14%), Positives = 153/456 (33%), Gaps = 21/456 (4%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F+         R+    N+   R    +   +  +N  + + I          +  
Sbjct: 524 SNEGFIKKIPLKTYNRSNVDENEIEYREGDYLKF-LIKSNTKDTLAIFTDKGTVYQIKCN 582

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +    +    KD  + ++D    +  +    ++       L  +  +         +  
Sbjct: 583 SV----SDKKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKFITANGLIKKTT 638

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L+       + + I      LL  +       ++       T      +  E E      
Sbjct: 639 LDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEI-ETTNGLNFVVSEPELEFTDR 697

Query: 537 D-------MVVTVSHLGYVKRVPLSVYRAQRRG--GKGRSGVVMRDEDFVTDLFIVSTHT 587
           +        + + + +  ++ V    Y+    G   KG             +   V++  
Sbjct: 698 NILGIQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEKVKVNSFR 757

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           +++ FS+ G V+K   + L           +       + E I  + P  E      +L+
Sbjct: 758 NIIAFSNKGKVFKFPAYLLQNTEESNISDLVD---GFEKDELIIKVAPINEFGKIGEDLF 814

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCV 706
           V F ++ G V++  L +F+    +  IA K    +DE+++V+   +   ++L TK G  +
Sbjct: 815 VYFFSREGLVKKTSLREFLGEFNNQ-IAYKFKTPKDELINVDINFENATVILVTKNGMGI 873

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +F  +AI    GR + GV GISL   ++VI   ++  ++   D+ +        +     
Sbjct: 874 KFSATAINPM-GRVASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAYNDYKKELTSNY 932

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                 +  K  + V     + + +  +     IL 
Sbjct: 933 EKLILESKQKEKAEVNIEDIKLQNRAGRGSSLMILV 968


>gi|229012771|ref|ZP_04169940.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
 gi|229134400|ref|ZP_04263213.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|229168313|ref|ZP_04296038.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228615139|gb|EEK72239.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH621]
 gi|228649021|gb|EEL05043.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST196]
 gi|228748452|gb|EEL98308.1| DNA topoisomerase 4 subunit A [Bacillus mycoides DSM 2048]
          Length = 807

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/884 (32%), Positives = 458/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EP+VL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  ++ L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RL  +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLFQVIKTDLKRVKKTYSDNRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNG-----KYFGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++SL + E +      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANLVSLERDESLIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLIL-VTQRGAVKRIKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAFRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 107/268 (39%), Gaps = 11/268 (4%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKYFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVR-GISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V   +SL + + +I   +V + + +    +   ++ 
Sbjct: 555 NKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLIWATVVPNFEEEKRFIVFVTRNG 614

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             ++  ++    +  S    +       E            I+  +   +    +  +  
Sbjct: 615 MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVS 674

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                  G++A ++ +      + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA 
Sbjct: 675 PVGVRAAGVKAINLKE---DDYVASGKPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAK 731

Query: 878 KGVVIFS-TAKDE-RVVSVERIRESEIV 903
           +G+VIF    ++  R+V +E +R+ E+V
Sbjct: 732 RGLVIFKELKRNPYRIVGIEIVRDDELV 759


>gi|228959780|ref|ZP_04121455.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229047279|ref|ZP_04192878.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|229111020|ref|ZP_04240579.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228672383|gb|EEL27668.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-15]
 gi|228724021|gb|EEL75367.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH676]
 gi|228799910|gb|EEM46852.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 807

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +     E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|206968720|ref|ZP_03229675.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|229071095|ref|ZP_04204321.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
 gi|229080801|ref|ZP_04213319.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|229179882|ref|ZP_04307228.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|229191681|ref|ZP_04318660.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|206735761|gb|EDZ52919.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH1134]
 gi|228591843|gb|EEK49683.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 10876]
 gi|228603563|gb|EEK61038.1| DNA topoisomerase 4 subunit A [Bacillus cereus 172560W]
 gi|228702535|gb|EEL55003.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-2]
 gi|228712035|gb|EEL63984.1| DNA topoisomerase 4 subunit A [Bacillus cereus F65185]
          Length = 807

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 462/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I         E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVQNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 82/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVQNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|163941203|ref|YP_001646087.1| DNA topoisomerase IV subunit A [Bacillus weihenstephanensis KBAB4]
 gi|163863400|gb|ABY44459.1| DNA topoisomerase IV, A subunit [Bacillus weihenstephanensis KBAB4]
          Length = 807

 Score =  664 bits (1712), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/884 (32%), Positives = 458/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EP+VL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPIVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  ++ L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATIMRIDQPNSSVEDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRIDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RL  +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLFQVIKTDLKRVKKTYSDNRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  ++L F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNG-----KYFGMKEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++SL + E +      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANLVSLERDESLIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLIL-VTQRGAVKRIKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAFRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 107/268 (39%), Gaps = 11/268 (4%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          ILL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKYFGMKEGDILLERFDTNTTETILLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVR-GISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V   +SL + + +I   +V + + +    +   ++ 
Sbjct: 555 NKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDESLIWATVVPNFEEEKRFIVFVTRNG 614

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             ++  ++    +  S    +       E            I+  +   +    +  +  
Sbjct: 615 MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALVFNEEEVS 674

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                  G++A ++ +      + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA 
Sbjct: 675 PVGVRAAGVKAINLKE---DDYVASGKPLNGEKDQLILVTQRGAVKRIKASEIEKSTRAK 731

Query: 878 KGVVIFS-TAKDE-RVVSVERIRESEIV 903
           +G+VIF    ++  R+V +E +R+ E+V
Sbjct: 732 RGLVIFKELKRNPYRIVGIEIVRDDELV 759


>gi|323488989|ref|ZP_08094226.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
 gi|323397381|gb|EGA90190.1| DNA topoisomerase IV subunit A [Planococcus donghaensis MPA1U2]
          Length = 808

 Score =  663 bits (1711), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/893 (32%), Positives = 467/893 (52%), Gaps = 90/893 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + + + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 3   QAERFQDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYHEGNTNDKAF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GS+DGD PAA RYT
Sbjct: 63  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKIRHMLVEMHGNNGSMDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL D+ K TVDF PN+D S  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSAISSELLRDIDKRTVDFIPNFDDSDMEPTVLPARFPNLLVNGSTGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H L EV+D  +  +DNP   +  LM +I+GPDFPTG +I G  GIK AY TG+G I++R
Sbjct: 183 PHALHEVLDAVLMRMDNPQATVAELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G +EQIV+TEIP++VNKA M++KI +   ++++  I+++RDESDR G R+V
Sbjct: 243 SKAEIEPLKGGKEQIVITEIPFEVNKANMIKKIDDHRFDRKLEGISEVRDESDRSGLRIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+   A  IL+ LY+ T LQ  ++ NMVA+   +P   TL  +L A++  ++EV+ +
Sbjct: 303 IELKKDVQAQGILSYLYKNTDLQVSYNFNMVAIYKRRPTMMTLQTMLDAYIEHQKEVITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L KA DR H++ GL  A++ LD+V++ IR S +   A+  L+             
Sbjct: 363 RSEFDLQKASDRMHIVEGLMKALSILDKVIKTIRSSTDKRDAKNNLIA------------ 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE Q  AI+ L+L RLT     D++ E +SL   I E   IL
Sbjct: 411 --------------AFDFSEAQAEAIVSLQLYRLTNTDITDLQKEEDSLKKTIAELTGIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
           +S ++L  +IK+EL +++ +   PRR+ I + + +  +  E  I  E++VVTV+  GYVK
Sbjct: 457 TSSTKLKNVIKKELANIRKQFAEPRRSVIEDKIEEITITREIMIPSEEVVVTVTREGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A            M++ D +     ++T  ++L F++ G    + +  LP  
Sbjct: 517 RTSTRSYAASNGKD-----FAMKETDHLLFEGNLNTQHTILIFTTAGNFVFQPINELPDI 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ L +I+ L+  E   +++     E+   +  ++  +K G V+R+ L D+    
Sbjct: 572 KWKDLGQHLSSIIQLDANE---SVLAVYPFENFDADASILTVSKLGQVKRSALKDYQIQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  M L S D ++     T+E ++ + T     VRFP+  +    G  + GV+G++
Sbjct: 629 YSRTVKTMNLKSGDAMIYAGLVTKETELFIGTNQAYGVRFPLEEV-PLTGLRTGGVKGVN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+ +S  ++                                               
Sbjct: 688 LKGDDEAVSAILIDPEVK------------------------------------------ 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                    Q ++ V+ +G  K+    +F   +R+ +G+      K N    +VAV    
Sbjct: 706 ---------QELVLVTHRGAAKKMKLDEFESGSRAKRGVVMLRELKSNPH-RVVAVIGAT 755

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             ++IIL + KG  I +  N ++   R + G  I   + D +VV+  R+   E
Sbjct: 756 GKEEIILETAKGLRIPLVANSLKNVDRYSNGSFIADESSDGKVVAAYRLNTKE 808


>gi|218234483|ref|YP_002368409.1| DNA topoisomerase IV subunit A [Bacillus cereus B4264]
 gi|218162440|gb|ACK62432.1| DNA topoisomerase IV, A subunit [Bacillus cereus B4264]
          Length = 807

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  +LL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKKLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 82/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|229146163|ref|ZP_04274538.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296504101|ref|YP_003665801.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
 gi|228637222|gb|EEK93677.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST24]
 gi|296325153|gb|ADH08081.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis BMB171]
          Length = 807

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 82/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|229151791|ref|ZP_04279990.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
 gi|228631604|gb|EEK88234.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1550]
          Length = 807

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEIPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 82/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  I     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEIPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|30021697|ref|NP_833328.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|229128868|ref|ZP_04257844.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
 gi|29897252|gb|AAP10529.1| Topoisomerase IV subunit A [Bacillus cereus ATCC 14579]
 gi|228654573|gb|EEL10435.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-Cer4]
          Length = 807

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EV+ R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   +L
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELNKKIIELQAVL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V+  G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTRNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +     E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEEEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
 gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873]
          Length = 970

 Score =  663 bits (1710), Expect = 0.0,   Method: Composition-based stats.
 Identities = 304/955 (31%), Positives = 474/955 (49%), Gaps = 90/955 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  +  ++  I   SI++ M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MSKKYM--NIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +D  VA IDN DI    LM  I+GPD PTG +I+G   + +A
Sbjct: 179 GIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIIIGEQALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y  G G + +R  + IEK   DR  I++ E PY+ NK+ +L+ I+E+  +K+      +I
Sbjct: 239 YEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENI 298

Query: 297 ADLRDESDRQGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ AS +V+      L++ T LQ   S NMVA+   KPE   
Sbjct: 299 TDIRDESDRNGIRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIADGKPETLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  ++EVV+RR++  L  A+ R H++ G   A+  +D+++  IR S + + +
Sbjct: 359 LKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             S  Q +AI+EL L +LTGL     
Sbjct: 419 EQNLVNK--------------------------FGFSMEQAQAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
             E  +L  EIK    ILSS   L  ++K+EL  VK++   PRRT IV       ++ E+
Sbjct: 453 EKEYKNLEKEIKALEKILSSEKELFKVVKKELEEVKEKYGDPRRTEIVHDDEQAKIDIEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+V+T+S+ GY+KRV    YR           +  R+ DF T L   +T  +++ 
Sbjct: 513 LILDEDIVITLSNEGYIKRVADKYYRRINP---KVEDIEYREGDFNTYLLNGNTKDNMMI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ ++  +P    + +G+ L  ++          I+          +   +F 
Sbjct: 570 FTDEGNLYQIRISNIPEMKWKEKGERLDTLIK-ALDIEKEKIIDIYITSELLPSKSFMFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T  G ++++ L  F   N S  +A+KL   ++++ ++    E+    I + TK G     
Sbjct: 629 TNRGVIKKSSLDKFKT-NYSKLLALKLKDNEKLIDIKLVNTEHIEKYISVITKNGLSFTV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-------------------- 748
            I  I   + RN +G +  +++  D+V S+  +   D                       
Sbjct: 688 DIPRI-EDSERNIMGTQIFNISDNDEVKSIKYIDKFDMKNFVVNINKNGNIKISNRINHK 746

Query: 749 -----------------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                            ++   Y       + + S   +    + +    E NI      
Sbjct: 747 NFYGCYANSLSRLIIFGEKGNVYYIPAYMIQNIDSKGIKLNDLIDDFKEKEENIVNIYSI 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +   ++ G+ KRT+  +F   N   KG +        E   ++ V   N++D
Sbjct: 807 SEFSDSTSVYFFTKSGYVKRTNLQEFNAENPCIKGYKLKK-----EQDKIINVLLFNNDD 861

Query: 852 --QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              IIL++     IR   N I    +   GV   S   ++ V+  + I + E  D
Sbjct: 862 KKDIILITKNAMGIRFEANSISYMGKIASGVTGISLRDNDEVIFAQFIDKKEEKD 916


>gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
 gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           BKT015925]
          Length = 970

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/955 (31%), Positives = 474/955 (49%), Gaps = 90/955 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  +  ++  I   SI++ M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MSKKNM--NIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R+ LI+G GN+GS+
Sbjct: 59  YKLKATPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ KD VD   NY  +  EP VL AR+PN+LVNG  
Sbjct: 119 DGDNAAAMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL E +D  VA IDN DI    LM  I+GPD PTG +I+G   + +A
Sbjct: 179 GIAVGLATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIIIGEQALLSA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y  G G + +R  + IEK   DR  I++ E PY+ NK+ +L+ I+E+  +K+      +I
Sbjct: 239 YEKGEGRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENI 298

Query: 297 ADLRDESDRQGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIE K+ A+ +V+      L++ T LQ   S NMVA+   KPE   
Sbjct: 299 TDIRDESDRNGIRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIADGKPETLG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V  ++EVV+RR++  L  A+ R H++ G   A+  +DE++  IR S + + +
Sbjct: 359 LKAILKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSKKDS 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             S  Q +AI+EL L +LTGL     
Sbjct: 419 EQNLVNK--------------------------FGFSMEQAQAIVELMLYKLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDED 531
             E  +L  +IK    ILSS   L  ++K+EL  VK++   PRRT IV       ++ E+
Sbjct: 453 EKEYKNLEKKIKALEKILSSEKELFKVVKKELEEVKEKYGDPRRTEIVHDDEQAKIDIEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+V+T+S+ GY+KRV    YR           +  R+ DF T +   +T  +++ 
Sbjct: 513 LILDEDIVITLSNEGYIKRVADKYYRRINP---KVEDIEYREGDFNTYVLNGNTKDNMMI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +Y+ ++  +P    + +G+ L  ++  +       I+    +     +   +F 
Sbjct: 570 FTNQGNLYQIRISNIPEMKWKEKGERLDTLIK-SLDIDKEKIIDIYINSELLPSKSFMFF 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T  G ++++ L  F   N S  +A+KL   ++++ ++     +    I + TK G     
Sbjct: 629 TNRGVIKKSSLDKFKT-NYSKLLALKLKDNEKLIDIKLVNTGHVEKYISVDTKNGLSFTV 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY-------------------- 748
            I  I   + RN +G +  +++  D+V S+      +                       
Sbjct: 688 DIPRI-EDSERNIMGTQIFNISNNDEVKSINYTDKFNISNFVVNINKNGSIKISNRINYK 746

Query: 749 -----------------DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
                            ++   Y       + + S   +    + +    E  I      
Sbjct: 747 NFYGCYANSLSRLIIFGNKGNVYCVPAYMIQNIDSKGIKLNDLIDDFKQNEEEIVNIYSI 806

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                   +   ++ G+ KRTS  +F   N   KG +        E   ++ V   N++D
Sbjct: 807 SELSDSTSVYFFTKSGYVKRTSLEEFNGENPCIKGYK-----FKKEEDTIINVLLANNDD 861

Query: 852 --QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              +IL++     IR   N I    +   GV   S   ++ V+  E I + E  D
Sbjct: 862 KKDVILITKNAMGIRFEANNISYMGKIASGVTGISLRDNDEVIFAEFIDKKEEKD 916


>gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
 gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase
           II), subunit A [Flavobacteriales bacterium ALC-1]
          Length = 622

 Score =  662 bits (1708), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/645 (46%), Positives = 437/645 (67%), Gaps = 29/645 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E + +  ++I DEM+++Y+ Y+++VI+ RA+PD+RDGLKPVHRR+L+GM ++GV  N  +
Sbjct: 3   EGEKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAH 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI GEV+GKYHPHG+ ++YD + RMAQ+WSLR +L++GQGNFGSVDGD PAA RYT
Sbjct: 63  KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R++K +  +L D+ K+TVD + N+D + +EP VL  R P +LVNG  GIAVGMATN+P
Sbjct: 123 EARMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+G +A I+N DI++D L++ I+ PDFPTG  I G  G+K A+ TGRG IV+R
Sbjct: 183 PHNLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIYGYDGVKEAFHTGRGRIVMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             ++IE+ +  RE I+V EIPYQVNKA M++K A+LV +K++  I+ +RDESDR G R+V
Sbjct: 243 AKANIEEVN-GRECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             LKR A  +++LN+L++YT+LQS FSVN +AL   +P+   L  ++  FV  R EVVVR
Sbjct: 302 YVLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNGRPQLLNLKELIHYFVEHRHEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L KA +RAH+L GL IA  N+DEV+ +IR S N + AR +L++R           
Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIER----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q +AI+E+RL +LTGL +D +R E ++L   I++  DIL
Sbjct: 411 ---------------FKLSEIQAKAIVEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
             + R + IIK+EL  VKD+    RR+ I     D+  ED I  E +V+T+SH GY+KR 
Sbjct: 456 DKKDRRMDIIKEELEVVKDKYGDERRSNIEYAGGDLSIEDMIPDEKVVITISHAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+ Q RGG G+     R+EDF+  LF+ + H  +LFF+  G  +  +V+ +P G+ 
Sbjct: 516 SLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAK 575

Query: 612 QARGKALINILSLNQGERITTIMPFPE--DESSWNNLYVVFATKH 654
            ++G+A+ N++++ Q +++   +   +  D+   N+ YV+ ATK+
Sbjct: 576 TSKGRAIQNLINIEQDDKVMAFICTQDLKDDDYINSHYVIMATKN 620



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 88/210 (41%), Gaps = 22/210 (10%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM-AIVLHADADYDERICYMKHMSA 760
           RF +S I+      +  +  + L      + D++ +    ++    D  + +        
Sbjct: 410 RFKLSEIQ------AKAIVEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDILDKKDRRMD 463

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
             +      ++    +  S++E    +   +++   E+ ++T+S  G+ KRTS  +++  
Sbjct: 464 IIKEELEVVKDKYGDERRSNIEYAGGDLSIEDMIPDEKVVITISHAGYIKRTSLTEYKTQ 523

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKG 879
           NR G G +A+     + +  L     V  N Q +L  + KG    + V EI   ++ +KG
Sbjct: 524 NRGGVGQKASTTRNEDFLEHL----FVGTNHQYMLFFTQKGKCFWMRVFEIPEGAKTSKG 579

Query: 880 ---VVIFSTAKDERVVSVERIRESEIVDEA 906
                + +  +D++V  +  I   ++ D+ 
Sbjct: 580 RAIQNLINIEQDDKV--MAFICTQDLKDDD 607



 Score = 39.0 bits (89), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS--GKIAMKLDSRDEILSVETCTQE 693
              ++   +   V+  +  G ++R  L+++   NR   G+ A    + D +  +   T  
Sbjct: 491 LSIEDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKASTTRNEDFLEHLFVGTNH 550

Query: 694 NDILLTTKLGQCVRFPISAIRV----FAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             +L  T+ G+C    +  I        GR       I++ + D+V++         D  
Sbjct: 551 QYMLFFTQKGKCFWMRVFEIPEGAKTSKGRAIQ--NLINIEQDDKVMAFICTQDLKDDDY 608

Query: 750 ERICYMKHMSAQRR 763
               Y+   +   R
Sbjct: 609 INSHYVIMATKNVR 622


>gi|299116769|emb|CBN74882.1| DNA gyrase subunit A [Ectocarpus siliculosus]
          Length = 1031

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/847 (35%), Positives = 463/847 (54%), Gaps = 56/847 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +V +  E++ S++ YA+++ILGRA+PD+RDGLKPVHRRIL+ M  + +     + K
Sbjct: 163 DQVVNVGLEAEIKTSFMQYAMSIILGRALPDVRDGLKPVHRRILYAMYGLNLNPEGTHRK 222

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CAR+ GEV+GKYHPHG+ A+YDAL RMAQD+ +   LI+G GNFGS+D DP AA RYTEC
Sbjct: 223 CARVVGEVLGKYHPHGDTAVYDALVRMAQDFVMSAPLIQGHGNFGSIDNDPAAAMRYTEC 282

Query: 134 RLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L   A   LL D+  DTVD   N+DG+ +EPVVL +R P +L+NG  GIAVGMATNIP 
Sbjct: 283 KLSSVAKDTLLTDINLDTVDMMTNFDGNEKEPVVLPSRLPLLLINGATGIAVGMATNIPP 342

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVV   +A+I NP I  D L  ++  PDFPTG  I+G  G +  Y T  G + +R 
Sbjct: 343 HNLGEVVAATIALIRNPGIPDDQLFRLLPAPDFPTGGRIMGLAGARKLYTTSNGGVTLRA 402

Query: 253 VSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +HIE    K    R  +VVTE+PYQVNK+++L+++AE+V +K++  I+DLRDESDR G 
Sbjct: 403 TTHIEVIEAKGRTKRNAVVVTELPYQVNKSSLLQRMAEMVNDKKLEGISDLRDESDRDGV 462

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFRE 366
           RVV+ELKR A+  V+ N L++ T LQ+ FS NM+AL  +G KP RF+L   +++FV FR 
Sbjct: 463 RVVVELKRDANPQVVENNLFKKTQLQTSFSGNMLALGSDGTKPHRFSLRAAIQSFVDFRF 522

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RRT + L K R R H++ G+  A+  +D V+ ++R S +   AR  LM        
Sbjct: 523 TTVRRRTAFELGKVRAREHIVQGMLQALGMIDAVIELVRASTDTPMARDGLMAEP----- 577

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AIL LRL RLT +    ++ E   L   ++ 
Sbjct: 578 --------------------YGLSQEQADAILALRLGRLTSMEEGKLKAEAEDLKAAMER 617

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +++  S+++ II +EL   K++   PRRT I     ++ +ED +  ++ VV V+  G
Sbjct: 618 LEGVMNEDSKVMDIIVEELTEAKNKHAVPRRTMIKPDEGELHEEDLLANDNSVVVVTAAG 677

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDED-FVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           Y+KR+PL  + AQ RG +G++G  M  +   V   F    H ++LF S  G  Y  + ++
Sbjct: 678 YIKRMPLEEFTAQNRGTRGKAGAKMSSDHDVVQHFFTCQDHDTILFVSDKGVAYGIRAFQ 737

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+GS  A+G  +  +L +   E+I +++   +      + Y+V  T+ G ++R  L+ F
Sbjct: 738 VPVGSRTAKGVPVPQVLPIAGDEQIASVLAVDDFR---EDEYLVLLTQKGYIKRTPLAAF 794

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF--PISAIRVFAGRNSVG 723
              +  G I + L   D +  V+ C  EN I++ +K G   RF      +R  +GR S G
Sbjct: 795 KSTSSRGLIIISLGEDDTLRWVKRCCDENGIVIGSKQGYATRFLANQKDLRP-SGRTSRG 853

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+     +G    S+ ++          +   K      + +             +    
Sbjct: 854 VK----EEGH---SLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQKLEDTLA---- 902

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                 C  +   +  I+  + +G   R  +      +R+  G+    +   + I  +  
Sbjct: 903 ------CFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVAL 956

Query: 844 VFPVNDN 850
           V  ++++
Sbjct: 957 VPEISED 963



 Score =  144 bits (362), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 113/308 (36%), Gaps = 42/308 (13%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEIL--SVETCTQ 692
             E++   N+  VV  T  G ++R  L +F      +   A    S D  +     TC  
Sbjct: 658 LHEEDLLANDNSVVVVTAAGYIKRMPLEEFTAQNRGTRGKAGAKMSSDHDVVQHFFTCQD 717

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADY- 748
            + IL  +  G         +     R + GV   + + +A  +Q+ S+  V     D  
Sbjct: 718 HDTILFVSDKGVAYGIRAFQV-PVGSRTAKGVPVPQVLPIAGDEQIASVLAVDDFREDEY 776

Query: 749 ---------------------------------DERICYMKHMSAQRRLISGDTEEITSL 775
                                            D+ + ++K    +  ++ G  +   + 
Sbjct: 777 LVLLTQKGYIKRTPLAAFKSTSSRGLIIISLGEDDTLRWVKRCCDENGIVIGSKQGYATR 836

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              +  +   S    + +K +   +L ++ +G+GKR +  +F+ + R GKG+ A  + + 
Sbjct: 837 FLANQKDLRPSGRTSRGVKEEGHSLLVLTTRGYGKRVALNEFKTTRRGGKGVIALKLRQK 896

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                L     V  +D+I+L + +GT++R     I   SR   GV++     ++ +  V 
Sbjct: 897 -LEDTLACFRIVGADDEIMLSTAQGTIVRQRAGAIARQSRTATGVIVQKLDANDGIKDVA 955

Query: 896 RIRESEIV 903
            + E    
Sbjct: 956 LVPEISED 963



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 30/274 (10%)

Query: 531  DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
            D    ++ +V ++  GY+KR PL+ +++    G     +   ++D +  +        ++
Sbjct: 769  DDFREDEYLVLLTQKGYIKRTPLAAFKSTSSRGLIIISLG--EDDTLRWVKRCCDENGIV 826

Query: 591  FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S  G+  +                 L N   L    R +                ++ 
Sbjct: 827  IGSKQGYATRF----------------LANQKDLRPSGRTSR-------GVKEEGHSLLV 863

Query: 651  ATKHGNVRRNKLSDFIQINR--SGKIAMKLDS--RDEILSVETCTQENDILLTTKLGQCV 706
             T  G  +R  L++F    R   G IA+KL     D +        +++I+L+T  G  V
Sbjct: 864  LTTRGYGKRVALNEFKTTRRGGKGVIALKLRQKLEDTLACFRIVGADDEIMLSTAQGTIV 923

Query: 707  RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            R    AI     R + GV    L   D +  +A+V     D           S       
Sbjct: 924  RQRAGAI-ARQSRTATGVIVQKLDANDGIKDVALVPEISEDAAAATGRPGASSGDDVGAG 982

Query: 767  GDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                   +         +   E  + L    + +
Sbjct: 983  SGDAGGVAEALRGGGGDDEYAEEEEGLGFGREEL 1016


>gi|116872720|ref|YP_849501.1| DNA topoisomerase IV subunit A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741598|emb|CAK20722.1| DNA topoisomerase IV, A subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 819

 Score =  662 bits (1707), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/884 (32%), Positives = 469/884 (53%), Gaps = 92/884 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G IV+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPLSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++E   L  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELADQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   S L+ ++K EL  +K +  TPRRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDESELIAVLKSELADIKKKYKTPRRTEVQAEISEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  ++L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIKKMNSLDTLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I + +              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSAIAIQTFT---EEKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+LSV       DI L T+ G  +R+PI+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKDNDELLSVNLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L + D VI   I+   D                                         
Sbjct: 688 INLKQDDIVIGGVILAPNDT---------------------------------------- 707

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 708 -----------KHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGMTL 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
            ++ND + + ++   ++ + V  +R+  R + G  +   T + E
Sbjct: 756 ADNNDHLFIETNTDQIVEIDVANLRVTDRYSNGSFVLDETMEGE 799



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 88/255 (34%), Gaps = 56/255 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R     +   N +    + +   D  + ++     + +LL T  G  + 
Sbjct: 507 IVSVTKEGYVKRTSQRSYAASNGAE---LAMKEADHAIFIKKMNSLDTLLLFTSKGNFIY 563

Query: 708 FPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +             I     GD V                               
Sbjct: 564 RPVHELPD-----------IRWKNLGDHV------------------------------- 581

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                 + L +D S    I      +   +E+  L V++ G  K+++  +++   R  K 
Sbjct: 582 ------SHLASDLSAGEEIRSAIAIQTFTEEKRFLFVTKNGMTKQSAITNYKPQ-RYSKS 634

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A  +        L++V  ++  + I L +  G  +R P+ EI  +   T GV   +  
Sbjct: 635 MMAIKLKD---NDELLSVNLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLK 691

Query: 887 KDERVVSVERIRESE 901
           +D+ V+    +  ++
Sbjct: 692 QDDIVIGGVILAPND 706


>gi|229031252|ref|ZP_04187258.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
 gi|228730010|gb|EEL80984.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1271]
          Length = 807

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 459/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV +
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTK 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEKEADELSTKIAELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++SL + E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANLVSLERDEMIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 67.5 bits (163), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 106/268 (39%), Gaps = 11/268 (4%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVR-GISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V   +SL + + +I   +V + + +    +   K+ 
Sbjct: 555 NKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIWATVVPNFEEEKRFIVFVTKNG 614

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             ++  ++    +  S    +       E            I+  +   +       +  
Sbjct: 615 MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFATDGTSDIVLATYGAYALIFHEDEVS 674

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                  G++A ++ +      + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA 
Sbjct: 675 PVGVRAAGVKAINLKE---DDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAK 731

Query: 878 KGVVIFS-TAKDE-RVVSVERIRESEIV 903
           +G+VIF    ++  R+V +E +R+ E+V
Sbjct: 732 RGLVIFKELKRNPYRIVGIEIVRDDELV 759


>gi|229075490|ref|ZP_04208479.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
 gi|229098039|ref|ZP_04228989.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|229104126|ref|ZP_04234800.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|229117057|ref|ZP_04246439.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228666461|gb|EEL21921.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock1-3]
 gi|228679333|gb|EEL33536.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-28]
 gi|228685476|gb|EEL39404.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-29]
 gi|228707739|gb|EEL59923.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock4-18]
          Length = 807

 Score =  661 bits (1706), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/884 (33%), Positives = 460/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDQPNSSVDDLLAVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  R           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVIPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAIKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  V     R   R + G ++        VV
Sbjct: 755 DDELVYMKTEKNIVEEVDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 58/255 (22%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V  I SL + + +I   ++ + +             
Sbjct: 555 NKGNYIYLPVYEMPEIRWKDLGQHVANIVSLDRDETIIWATVIPNFE------------- 601

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                +++FI+ V+  G  K+T    ++
Sbjct: 602 ------------------------------------EEKRFIVFVTRNGMIKKTELNQYK 625

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +  R  +   A ++    +   +V +F  +    I+L +     +    +E+        
Sbjct: 626 VQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA 681

Query: 879 GVVIFSTAKDERVVS 893
           GV   +  +D+ V S
Sbjct: 682 GVKAINLKEDDYVAS 696


>gi|228916226|ref|ZP_04079796.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228986685|ref|ZP_04146815.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229157169|ref|ZP_04285249.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228626233|gb|EEK82980.1| DNA topoisomerase 4 subunit A [Bacillus cereus ATCC 4342]
 gi|228773016|gb|EEM21452.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228843424|gb|EEM88502.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 807

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|289434571|ref|YP_003464443.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289170815|emb|CBH27357.1| DNA topoisomerase IV, A subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 819

 Score =  661 bits (1705), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/903 (31%), Positives = 472/903 (52%), Gaps = 90/903 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K EL  +K +  TPRRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELVAVLKAELSEIKKKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  ++L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNG-----KELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G  + ++ S              + ++       +F TK+G  +++ ++++   
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIR--SVIDIQTFTEEKRFLFVTKNGMTKQSLITNYKPQ 629

Query: 669 NRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  +  +KL   DE+LSV       DI L TK G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKSMMGIKLKDDDELLSVHLIDGTEDIFLATKNGYGLRYPIAEIPESGARTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D VI   ++   D  +                                       
Sbjct: 689 NLKQDDTVIGGVVLTPNDNRH--------------------------------------- 709

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       IL  +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 710 ------------ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
           ++ D + + +    ++ V V  +R+  R + G  +     +   +S+  +   EI D  +
Sbjct: 757 DNKDHLFIETKTEQIVEVDVANLRVTDRYSNGSFVLDETMEGEPISI-WLDIPEIKDTTD 815

Query: 908 STE 910
           S +
Sbjct: 816 SKD 818


>gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065]
          Length = 956

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/939 (30%), Positives = 460/939 (48%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VI   ++      +  L  LY+ T LQS  S NMVAL   KP+   L  +LK +V 
Sbjct: 308 GIRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++   
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +++Q  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T
Sbjct: 462 INKLTKILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEEIIVEEDVVLT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ 
Sbjct: 522 LSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I          +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVKLDEIIKTIDLSETIMEAFSIEAFTAQKD---MLFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++  +      +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN +G +   +   D +                 IS                +++   +
Sbjct: 695 -RNIIGYKLFDILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       +     EE  ++   +  + ++          ++  I   S
Sbjct: 754 SKILVLFDDEGKAYYIPAFMFQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           EKG  KRT   + +I      G         ++   LV++      +Q  I+++++K  +
Sbjct: 814 EKGLIKRTLLSELKIE-----GNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    I E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 12/218 (5%)

Query: 547 YVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            V       Y++       +G   +    ++         +   ++ F   G  Y    +
Sbjct: 713 KVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAF 772

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                  +    +              +++          ++ + F+++ G ++R  LS+
Sbjct: 773 MFQSIKEEGINISAFT-------GDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSE 825

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 S ++       D+++S+         +IL+ T+    +RF   A+    G+ + 
Sbjct: 826 LKIEGNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNPM-GKMAS 884

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           GV GISL   D+VI  +I+   D    +     K    
Sbjct: 885 GVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGT 922


>gi|229018786|ref|ZP_04175635.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
 gi|228742536|gb|EEL92687.1| DNA topoisomerase 4 subunit A [Bacillus cereus AH1273]
          Length = 807

 Score =  661 bits (1704), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 457/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +I+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINHRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRGSKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E   L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEAAELSKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  ++L F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETILLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N+++L + E +      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANLVTLERDETLIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ I + ++K  +  +     R   R + G ++        VV
Sbjct: 755 DDELIYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 798



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 75/254 (29%), Gaps = 56/254 (22%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          ILL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETILLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMS 759
             G  +  P+  +             I     G  V ++  +   +              
Sbjct: 555 NKGNYIYLPVYEMPE-----------IRWKDLGQHVANLVTLERDET------------- 590

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                    I        + +++FI+ V+  G  K+T    +++
Sbjct: 591 ------------------------LIWATVVPNFEEEKRFIVFVTRNGMIKKTELNQYKV 626

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R  +   A ++    +   +V +F  +    I+L +     +    +E+        G
Sbjct: 627 Q-RYSRAFVAVNLK---KEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAAG 682

Query: 880 VVIFSTAKDERVVS 893
           V   +  +D+ V S
Sbjct: 683 VKAINLKEDDYVAS 696


>gi|42782666|ref|NP_979913.1| DNA topoisomerase IV subunit A [Bacillus cereus ATCC 10987]
 gi|217960998|ref|YP_002339566.1| DNA topoisomerase IV subunit A [Bacillus cereus AH187]
 gi|229140209|ref|ZP_04268767.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
 gi|42738592|gb|AAS42521.1| DNA topoisomerase IV, A subunit [Bacillus cereus ATCC 10987]
 gi|217067187|gb|ACJ81437.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH187]
 gi|228643295|gb|EEK99568.1| DNA topoisomerase 4 subunit A [Bacillus cereus BDRD-ST26]
          Length = 807

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V +   +                                               
Sbjct: 688 LKEDDYVAAGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V +
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAA 696


>gi|30263544|ref|NP_845921.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Ames]
 gi|47528942|ref|YP_020291.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186396|ref|YP_029648.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Sterne]
 gi|49478288|ref|YP_037676.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141940|ref|YP_084889.1| DNA topoisomerase IV subunit A [Bacillus cereus E33L]
 gi|65320875|ref|ZP_00393834.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bacillus anthracis str. A2012]
 gi|165871002|ref|ZP_02215653.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167636462|ref|ZP_02394760.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|167640597|ref|ZP_02398859.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|170688468|ref|ZP_02879676.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|170708104|ref|ZP_02898551.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|177652496|ref|ZP_02934963.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190564666|ref|ZP_03017587.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196038438|ref|ZP_03105747.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227813572|ref|YP_002813581.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228934868|ref|ZP_04097699.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229197704|ref|ZP_04324424.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|229601236|ref|YP_002867789.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|254686163|ref|ZP_05150022.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. CNEVA-9066]
 gi|254726070|ref|ZP_05187852.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. A1055]
 gi|254738636|ref|ZP_05196339.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744806|ref|ZP_05202484.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Kruger B]
 gi|254752954|ref|ZP_05204990.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Vollum]
 gi|254759226|ref|ZP_05211252.1| DNA topoisomerase IV subunit A [Bacillus anthracis str. Australia
           94]
 gi|301055083|ref|YP_003793294.1| DNA topoisomerase IV subunit A [Bacillus anthracis CI]
 gi|30258179|gb|AAP27407.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Ames]
 gi|47504090|gb|AAT32766.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180323|gb|AAT55699.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. Sterne]
 gi|49329844|gb|AAT60490.1| DNA topoisomerase IV, subunit A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975409|gb|AAU16959.1| DNA topoisomerase IV, subunit A [Bacillus cereus E33L]
 gi|164713213|gb|EDR18739.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0488]
 gi|167511465|gb|EDR86849.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0193]
 gi|167528121|gb|EDR90913.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0442]
 gi|170126912|gb|EDS95792.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0389]
 gi|170667638|gb|EDT18393.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0465]
 gi|172082170|gb|EDT67237.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0174]
 gi|190563983|gb|EDV17947.1| DNA topoisomerase IV, A subunit [Bacillus anthracis Tsiankovskii-I]
 gi|196030846|gb|EDX69444.1| DNA topoisomerase IV, A subunit [Bacillus cereus NVH0597-99]
 gi|227005775|gb|ACP15518.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. CDC 684]
 gi|228585781|gb|EEK43879.1| DNA topoisomerase 4 subunit A [Bacillus cereus m1293]
 gi|228824768|gb|EEM70569.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229265644|gb|ACQ47281.1| DNA topoisomerase IV, A subunit [Bacillus anthracis str. A0248]
 gi|300377252|gb|ADK06156.1| DNA topoisomerase IV subunit A [Bacillus cereus biovar anthracis
           str. CI]
 gi|324327494|gb|ADY22754.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 807

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 462/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----ADKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|196044554|ref|ZP_03111789.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225865578|ref|YP_002750956.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|229185831|ref|ZP_04313004.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
 gi|196024589|gb|EDX63261.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB108]
 gi|225786959|gb|ACO27176.1| DNA topoisomerase IV, A subunit [Bacillus cereus 03BB102]
 gi|228597543|gb|EEK55190.1| DNA topoisomerase 4 subunit A [Bacillus cereus BGSC 6E1]
          Length = 807

 Score =  660 bits (1703), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 462/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FDFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I         E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVQNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVQNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|229092561|ref|ZP_04223717.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
 gi|228690848|gb|EEL44623.1| DNA topoisomerase 4 subunit A [Bacillus cereus Rock3-42]
          Length = 807

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/884 (33%), Positives = 461/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I         E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVSNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----ADKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVSNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
 gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328]
          Length = 876

 Score =  660 bits (1702), Expect = 0.0,   Method: Composition-based stats.
 Identities = 310/935 (33%), Positives = 472/935 (50%), Gaps = 133/935 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +   S+T+EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 11  EVIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 130

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    +  LL  +G+ TVDF  N+D S QEP VL A+ P +++NG  GIAVGMATNIP H
Sbjct: 131 LAAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+ID+PD+    LM++I GPDFPTG  I+   GI  AY +GRGSIV+RGV
Sbjct: 191 NLGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVATAGIAEAYTSGRGSIVMRGV 250

Query: 254 SHIEK-----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+         +  IVVTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G 
Sbjct: 251 AKIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGISDIRDESDREGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A+ +V+L+ LY++T L S F    +AL   +P + +L  IL+ F+ FRE+ 
Sbjct: 311 RVVIELKREATPEVVLHNLYQHTDLMSKFGAIFLALVNSQPRQLSLKQILQEFLGFREQT 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR +  L  A  RA ++ GL  A+A LDEV+ I+R +P+  +A+  L  R        
Sbjct: 371 LLRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKISLETR-------- 422

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + L+  Q   IL + L RLT L    ++ E   L  +I    
Sbjct: 423 ------------------LDLTGEQADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLR 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME-------------------- 528
            +LS R+ LL  +K+EL S+K     PRRTRIV                           
Sbjct: 465 LLLSERAELLKSLKKELRSLKRRYSDPRRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKS 524

Query: 529 ---DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                     E+ +V ++  GYV+RV  S   A  R        +   +DF    ++ +T
Sbjct: 525 KILRPQLPAVEETLVEMTLKGYVRRVTPS---ALSRPQSREDITIEAIDDFPVASYLTTT 581

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI---MPFPED--- 639
             +++  + +G  Y   V  +P  S ++RG  LI +LS +  +  ++    +        
Sbjct: 582 AETLVIINRMGKAYPLSVADIPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGA 641

Query: 640 ------------------ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
                              +      ++  +  G ++R   +DF+ ++  G   MKL   
Sbjct: 642 GLQSSPLRRTTDGGTSPKSAFSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDN 701

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAI 740
           DE+         + ++L T  G+ +R  I++ +    GR + G     L K +Q++    
Sbjct: 702 DELSYANLAATGDQVVLATSGGRLLRLDINSEQIPVMGRTAQGSVATRLRKNEQLVGCIT 761

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +                                                    +L  QFI
Sbjct: 762 LSSTG------------------------------------------------ELNNQFI 773

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L VSE+G+ KR S    + S R G G +       ++      +  ++  + +  ++ + 
Sbjct: 774 LLVSEQGYFKRISLQSLQRSRRGGIGTQMLQFHTRDDACR--GLAAISPGEVVYCLTSEN 831

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            ++ +  + + +  +   G  +      ER++SV 
Sbjct: 832 RMVTLVPDVVPVWGKDGYGDRMVELNSGERILSVV 866


>gi|206975428|ref|ZP_03236341.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|222097050|ref|YP_002531107.1| DNA topoisomerase iv subunit a [Bacillus cereus Q1]
 gi|206746330|gb|EDZ57724.1| DNA topoisomerase IV, A subunit [Bacillus cereus H3081.97]
 gi|221241108|gb|ACM13818.1| DNA topoisomerase IV, subunit A [Bacillus cereus Q1]
          Length = 807

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 462/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFISNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----ADKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|126652426|ref|ZP_01724599.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
 gi|126590847|gb|EAZ84961.1| DNA topoisomerase IV subunit A [Bacillus sp. B14905]
          Length = 812

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 299/887 (33%), Positives = 471/887 (53%), Gaps = 89/887 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
              +    + + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G    K 
Sbjct: 2   SSTEKFQDLPLEEVMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMFTEGNTHEKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW  R +LIE  GN GSVDGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKARHMLIEMHGNNGSVDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L D+GK TV+F PN+D    EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSAIAGEMLRDIGKKTVEFVPNFDDQDMEPTVLPARFPNLLVNGSTGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H L EV+D  +  +D P   +D LM +++GPDFPTG +I G  GIK AY TGRG I++
Sbjct: 182 PPHALDEVLDAVLMRLDKPTATVDELMTVLKGPDFPTGGIIQGVDGIKKAYETGRGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E   G +EQIVVTE+PY VNKA +++KI E   +KR+  IA++RDESDR G RV
Sbjct: 242 RAQAVVEPIKGGKEQIVVTELPYDVNKANLVKKIDEQRVDKRLEGIAEIRDESDRTGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+      IL  L++ T LQ  ++ NM+A++  +P   TL  +L A++  ++EVV 
Sbjct: 302 VIELKKDVPGQGILQYLFKTTDLQVAYNFNMIAIHNRRPTMMTLPLLLDAYITHQKEVVT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R+ Y L KA+DR+H++ GL  A++ LDEV+  IR S + + A+  L  +          
Sbjct: 362 NRSIYDLQKAKDRSHIVDGLIKALSILDEVIATIRSSNDKKDAKLNLQAK---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +EVQ  AI+ L+L RLT     ++R E + L   I +   I
Sbjct: 412 ----------------FDFTEVQAEAIVSLQLYRLTNTDITELRQEQDDLNKLIAKLEGI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           L S ++L+ +IKQELL +K     PRR+RI + + +++   +  +  E++VVTV+  GY+
Sbjct: 456 LQSEAKLVRVIKQELLDIKKRFTEPRRSRIEQEIEEIKITLDVLVPSEEVVVTVTKDGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A            M+D D++     ++T   +L F++ G    + V  LP 
Sbjct: 516 KRTSTRSHAASNG-----QDFAMKDSDYLLYEANLNTQHHLLLFTNRGNYIYQPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ + +I+  ++ E I  +  F   E    N Y++ ATK G ++R+ L+D+   
Sbjct: 571 IRWKDLGQHISSIVPTSEDESIIAVYGFETFE--QPNTYILTATKDGQIKRSPLADYAVT 628

Query: 669 NRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S  I  M + + D ++     T + ++LLTT     +RFPI  +    G  + GV+GI
Sbjct: 629 RYSKPIKTMNVKAGDAMIYASFMTDDVELLLTTDTAYAIRFPIEEL-PVTGVKTGGVKGI 687

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L  G+ ++ + ++   +                                          
Sbjct: 688 TLKDGEALVGVNVLQPDET----------------------------------------- 706

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                     Q+++ V+++G  K+ +  +  ++ R+ +G++     K N    +VAV   
Sbjct: 707 ----------QYVVIVTQRGAVKKMNVAEVEVAGRAKRGLKVLTELKANPH-RIVAVIQA 755

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +++Q+++ ++KG    + V  +  A R + G      A D  +  V
Sbjct: 756 TNDEQVVIETEKGVQEFIDVQALTRADRHSNGSFKVDIATDGAISHV 802



 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 54/254 (21%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  TK G ++R         N        +   D +L       ++ +LL T  G  + 
Sbjct: 506 VVTVTKDGYIKRTSTRSHAASNGQDF---AMKDSDYLLYEANLNTQHHLLLFTNRGNYIY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +               +   D                                  
Sbjct: 563 QPVHELP-------------DIRWKD---------------------------------- 575

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
             + I+S+   S  E  I+    +  +    +ILT ++ G  KR+   D+ ++ R  K I
Sbjct: 576 LGQHISSIVPTSEDESIIAVYGFETFEQPNTYILTATKDGQIKRSPLADYAVT-RYSKPI 634

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  +V       A++    + D+ +++L +D    IR P+ E+ +    T GV   +   
Sbjct: 635 KTMNVKAG---DAMIYASFMTDDVELLLTTDTAYAIRFPIEELPVTGVKTGGVKGITLKD 691

Query: 888 DERVVSVERIRESE 901
            E +V V  ++  E
Sbjct: 692 GEALVGVNVLQPDE 705


>gi|47570275|ref|ZP_00240925.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
 gi|47553066|gb|EAL11467.1| DNA topoisomerase IV, A subunit [Bacillus cereus G9241]
          Length = 807

 Score =  659 bits (1701), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/884 (33%), Positives = 463/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQIWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6]
 gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus
           TK-6]
          Length = 761

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/861 (34%), Positives = 453/861 (52%), Gaps = 126/861 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT+V+I +E++ SY+ YA++VI+GRAIPD RDGLKPV RRIL+ M QMG+   K +VK 
Sbjct: 2   EITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKS 61

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G V+G YHPHG+ A+YDAL RMAQD+++R  LI GQGNFGS+DGDPPAA RY+E +
Sbjct: 62  ARIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAK 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  +L+D+ ++TVDF PN+DGS  EP +L +++PN+L NG  GIAVG+AT+IP HN
Sbjct: 122 LSKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV    + +  NP+I  + +M+ I+GPDFPTG ++     +   Y TGRG + +R  +
Sbjct: 182 LKEVCSALIELAKNPNISTEEIMKRIKGPDFPTGGIVENYQELIEYYHTGRGHVRVRAKA 241

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           H+EK  G REQIV+TEIPYQVNKA +++++AELVRE ++ +I+++RDESD++G R+VIEL
Sbjct: 242 HVEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIEL 301

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A    +L +LY++T+L+  F +N V L   +P++  +  +L+ F+  R EV++RR K
Sbjct: 302 KRDAQGQKVLEKLYKHTALRKNFPINFVVLIDNQPKQVGIKELLQEFLRHRLEVILRRAK 361

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KA DR H++ GL  A+ +LD+V++ IR S +   A+ +LM+               
Sbjct: 362 HHLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMK--------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE Q  A+L++RL RLT L    +  E   L   I+    ++SS 
Sbjct: 407 -----------NYTLSERQANAVLDMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISSE 455

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
              + +  QE+  +  E  +PRR+ ++        E+  V +  V+  S+          
Sbjct: 456 EERIKVFIQEMEEIVKEFPSPRRSFVLGF------ENEEVGQITVIIYSN---------- 499

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                   GK      M++E  V D+  V     +   S+ G VY     +   GS  + 
Sbjct: 500 --------GKIMPLEEMQEEGQVVDVLDVPFSEGLFMVSNRGRVYWIAGSQALQGSKVSF 551

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                         +            S  +  ++  TK G V++  + DF      G  
Sbjct: 552 --------------KEADESVVGAFVRSQASHRIILITKRGYVKKIPIVDFE-YKTQGMS 596

Query: 675 AMKLD-SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +K     DE++ V    +E DILL T+ G+ +RFPI  I       S GV GI L   D
Sbjct: 597 IIKFSEEEDEVVKVLQSPEEGDILLLTRKGKMLRFPIRDIPPAT-VGSKGVIGIKLEGDD 655

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +IS   +                                                    
Sbjct: 656 TLISARAITDF------------------------------------------------- 666

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                ++L +++KG  K+ ++ D     R  KG+ AT  +K    G  V + P+ ++ ++
Sbjct: 667 ----PYLLLITQKGAVKKINAKDIPARGRGSKGMTATARTK----GDAVDIVPIKESVEL 718

Query: 854 ILVSDKGTLI--RVPVNEIRI 872
           ++ + +G +   R+   EI +
Sbjct: 719 MIATQEGKVFYDRLEEREIPL 739



 Score = 80.2 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 5/155 (3%)

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D         +  +S + R+      +       S  E + S             I+ ++
Sbjct: 516 DVLDVPFSEGLFMVSNRGRVYWIAGSQALQGSKVSFKEADESVVGAFVRSQASHRIILIT 575

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G+ K+    DF       +G+     S+  E   +V V    +   I+L++ KG ++R
Sbjct: 576 KRGYVKKIPIVDFEYK---TQGMSIIKFSE--EEDEVVKVLQSPEEGDILLLTRKGKMLR 630

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            P+ +I  A+  +KGV+      D+ ++S   I +
Sbjct: 631 FPIRDIPPATVGSKGVIGIKLEGDDTLISARAITD 665



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 8/171 (4%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              + V+   +     +    RI  +      +++   D E  T   +         E  
Sbjct: 553 EADESVVGAFV----RSQASHRIILITKRGYVKKIPIVDFEYKTQGMSIIKFSEEEDEVV 608

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +E  IL ++ KG   R    D   +    KG+    +        L++   + D
Sbjct: 609 KVLQSPEEGDILLLTRKGKMLRFPIRDIPPATVGSKGVIGIKL---EGDDTLISARAITD 665

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              ++L++ KG + ++   +I    R +KG+   +  K + V  +  I+ES
Sbjct: 666 FPYLLLITQKGAVKKINAKDIPARGRGSKGMTATARTKGDAV-DIVPIKES 715


>gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
 gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101]
          Length = 873

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/943 (32%), Positives = 472/943 (50%), Gaps = 144/943 (15%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + S+  EMQ SYL YA++VI+GRA+PD+RDG KPVHRRI++ M ++G+  ++ + KC
Sbjct: 11  KVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPFRKC 70

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDA+ RM Q++S R  L++G GNFGS+D DP AA RYTE R
Sbjct: 71  ARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRYTESR 130

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L    +  LL  + +  VDF  N+DGS QEP VL A+ P +L+NG  GIAVGMATN+P H
Sbjct: 131 LASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNVPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVDG +A+IDNP+I    L E+I GPDFPTG  I+   GI + Y  GRGSI +RGV
Sbjct: 191 NLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDGIIDTYTKGRGSIPMRGV 250

Query: 254 SHIEKTSGDR-----EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + IE+    R       IVVTE+P+QVNKA  +EK A+LV   +I  IADLRDESDR G 
Sbjct: 251 ATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDRSGI 310

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A   V+L+ LYR T L S F   M+AL   +P++ +L  +L+ F+ FREE 
Sbjct: 311 RVVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALVNGQPQQLSLRTLLQEFLNFREET 370

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R   + L  A+ R+H++ GL  A+  LD V+ I+R +P+  TA+    +         
Sbjct: 371 LTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQE--------- 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            ++ LSE Q  AIL + + RLTGL +  +  E   L  +I+E  
Sbjct: 422 -----------------SLGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELE 464

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC---------------- 532
           ++L  R +LL  +K+EL ++K + + PRRTRI++ +     +D                 
Sbjct: 465 NLLGDRHQLLKALKKELRTLKRKYNDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKE 524

Query: 533 ----------------------------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                                          E +V+  SH GYV+R+P   +   +   K
Sbjct: 525 IDIKTKGRVIKSKNITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKK 584

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ------ARGKAL 618
               +   ++ F T++   +T  +++  +  G  Y  KV  +P  S +       +G  L
Sbjct: 585 SHITMENSED-FTTNIIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPL 643

Query: 619 INILSLNQGERITT-----IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           + +L  +  + IT      I+       +  N  ++  T++G ++R  LSD   +   G 
Sbjct: 644 VTLLPPSATKEITDARKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGV 703

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKG 732
             +KL   DE+  V        ++L T  G+ +R  I   +    GR + G +   L K 
Sbjct: 704 TVIKLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRKQ 763

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++++    +                                                   
Sbjct: 764 EELVGCVTLDIGSN---------------------------------------------- 777

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  +L VS+  +GK+      R++NR G G      ++ ++I  L  +   + N  
Sbjct: 778 -------LLLVSQHSYGKQIPVTALRVANRGGIGQNVFQFTRQDDI--LAGIVASSSNVL 828

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + +++  G +  +  + +++  +   G  +      E+++ V 
Sbjct: 829 VQVLTTDGRVFGMIADRVKVDQQDDHGHRLLKLGAKEKIIKVV 871


>gi|196034049|ref|ZP_03101459.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218904723|ref|YP_002452557.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228928648|ref|ZP_04091684.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947211|ref|ZP_04109505.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229123113|ref|ZP_04252320.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|195993123|gb|EDX57081.1| DNA topoisomerase IV, A subunit [Bacillus cereus W]
 gi|218538462|gb|ACK90860.1| DNA topoisomerase IV, A subunit [Bacillus cereus AH820]
 gi|228660407|gb|EEL16040.1| DNA topoisomerase 4 subunit A [Bacillus cereus 95/8201]
 gi|228812458|gb|EEM58785.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228830967|gb|EEM76568.1| DNA topoisomerase 4 subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 807

 Score =  659 bits (1700), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 462/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I      P  E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVPNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL  +++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----ADKDQLILV-TQRGAIKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVPNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str.
           Langeland]
 gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra]
 gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. Langeland]
 gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           B1 str. Okra]
 gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           F str. 230613]
          Length = 956

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/939 (30%), Positives = 462/939 (49%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQ+++ R+ LI+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VI   ++      +  L  LY+ T LQS  S NMVAL   KP+   L  +LK +V 
Sbjct: 308 GIRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++   
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +++Q  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   IL S   LL +IK+EL+ VK+  +  R+T I+E      ++ E+ IV ED+V+T
Sbjct: 462 INKLTKILKSEKELLKVIKKELIEVKETYNDKRKTSIIEDDEKAKIDVEEIIVEEDVVLT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G+ KR+ L  Y    R       +  R+ DF   +   +T  ++   +  G +Y+ 
Sbjct: 522 LSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I       +  +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVKLDEIIKTIDLSETIMEAFSIEDFTAQKD---MLFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++  +      +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGESLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN +G +   +   D +                 IS                +++   +
Sbjct: 695 -RNIIGYKLFDILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       ++    EE  ++   +  + ++          ++  I   S
Sbjct: 754 SKILVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           EKG  KRT   + +I      G         ++   LV++      +Q  I+++++K  +
Sbjct: 814 EKGLIKRTLLSELKIE-----GNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    I E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 547 YVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            V       Y++       +G   +    ++         +   ++ F   G  Y    +
Sbjct: 713 KVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAF 772

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L     +    +              +++          ++ + F+++ G ++R  LS+
Sbjct: 773 MLQSIKEEGINISAFT-------GDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSE 825

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 S ++       D+++S+         +IL+ T+    +RF   A+    G+ + 
Sbjct: 826 LKIEGNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNPM-GKMAS 884

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           GV GISL   D+VI  +I+   D    +     K    
Sbjct: 885 GVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGT 922


>gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833]
 gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM
           43833]
          Length = 841

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/890 (32%), Positives = 423/890 (47%), Gaps = 95/890 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     + D++ ++ I  + +  EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 4   MPRRTTAPDQDFQERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VK +R+ GEVMGK HPHG+AAIYDAL RMAQ +S+RL L++G GNFGS 
Sbjct: 64  SEMGLRPDRGHVKSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSP 123

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  ++  + ++TVDFRPNYDG   EP VL A +PN+LVNG  
Sbjct: 124 D-DAPAAMRYTEARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGAS 182

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV+     ++  PD  LD LM+ + GPD PTG +I+G   I+ A
Sbjct: 183 GIAVGMATNIPPHNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGGLIIGLDAIREA 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R  + IE  +  R+ IVVTE+P+ V    ++ KI ELV+ K++V IADL+
Sbjct: 243 YETGRGTFRMRARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLK 302

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D  +G R+VIE+K G + + +L +LYR T ++  F +N VAL   +P    L  +L 
Sbjct: 303 DLTDRHKGLRLVIEVKTGFNPEAVLEELYRLTPMEETFGINSVALVDGQPRTLGLRDLLA 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  R EVV RR+ Y   K  +R H++ GL  A+ N+DEV+++IR S +P  AR  LM+
Sbjct: 363 VYVNHRLEVVRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLME 422

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                     T  LSE Q   IL+  L RLT   + ++  E   
Sbjct: 423 --------------------------TFGLSEAQAGYILDTPLRRLTRYDKLELEREKEG 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L  EI E   IL S  RL  ++ +EL  V  +  TPRRT++++                +
Sbjct: 457 LQAEIAELNAILGSEDRLRRVVSKELAEVAKKYGTPRRTQLLDSAEAALKTAIPLEVADD 516

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             +V +S  G + R                        D +      +    V   +S G
Sbjct: 517 PCLVLLSSTGLIAR--------TADASPLPGDGPRAPHDVLVSAVRTTVRGEVGVITSKG 568

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY-VVFATKHG 655
            + +  V  LP         +L     + +   +          S     + +   T  G
Sbjct: 569 RMIRVSVVELPTLPASGDPPSLAGAQPVTEYVTLEPDEHVVGLGSLDEAGHGIALGTAQG 628

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R      +   R     + L   D ++ +VE  + ++D++  T   Q +RFP + +R
Sbjct: 629 VVKRVAPDYPVN--RDDFEIISLREGDRVVGAVELESPDHDLVFITSDAQLLRFPAATVR 686

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + GV GI LA+G +VI    V  A       +                      
Sbjct: 687 P-QGRPAGGVAGIRLAEGARVIWFGAVDPARESRVVTVAGSSTALPG------------- 732

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                        ++ G  K +    F    R+  G+RA    K
Sbjct: 733 -----------------------------TQTGTVKVSDYAVFPPKGRATGGVRAQRFLK 763

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIF 883
             ++  L    P         +S  G  + +P         R   G  + 
Sbjct: 764 GEDVLLLAWAGPAPAK----AISPSGQPVELPAE----LGRRDGSGTRLM 805



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 8/143 (5%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  ++  +               +    ++E +        L      I   + +G  K
Sbjct: 572 RVSVVELPTLPASGDPPSLAGAQPVTEYVTLEPDEHVVGLGSLDEAGHGIALGTAQGVVK 631

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNE 869
           R  + D+ + NR    I +       E   +V    +   +  ++ ++    L+R P   
Sbjct: 632 RV-APDYPV-NRDDFEIISLR-----EGDRVVGAVELESPDHDLVFITSDAQLLRFPAAT 684

Query: 870 IRIASRATKGVVIFSTAKDERVV 892
           +R   R   GV     A+  RV+
Sbjct: 685 VRPQGRPAGGVAGIRLAEGARVI 707



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 86/275 (31%), Gaps = 39/275 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  +V  +  G + R   +  +  +            D ++S    T   ++ + T  G
Sbjct: 515 DDPCLVLLSSTGLIARTADASPLPGDGPRA------PHDVLVSAVRTTVRGEVGVITSKG 568

Query: 704 QCVRFPISAIRVFAGRNSVG----VRG-------ISLAKGDQVISMAIVLHADADYDERI 752
           + +R  +  +       + G    + G       ++L   + V+ +  +  A        
Sbjct: 569 RMIRVSVVELPTLP---ASGDPPSLAGAQPVTEYVTLEPDEHVVGLGSLDEAG-----HG 620

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
             +       + ++ D           S+          EL+  +  ++ ++      R 
Sbjct: 621 IALGTAQGVVKRVAPDYPVNRDDFEIISLREGDRVVGAVELESPDHDLVFITSDAQLLRF 680

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG--------TLIR 864
            +   R   R   G+    +++      ++    V+   +  +V+  G            
Sbjct: 681 PAATVRPQGRPAGGVAGIRLAEG---ARVIWFGAVDPARESRVVTVAGSSTALPGTQTGT 737

Query: 865 VPVNE---IRIASRATKGVVIFSTAKDERVVSVER 896
           V V++        RAT GV      K E V+ +  
Sbjct: 738 VKVSDYAVFPPKGRATGGVRAQRFLKGEDVLLLAW 772


>gi|118478840|ref|YP_895991.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118418065|gb|ABK86484.1| DNA topoisomerase IV subunit A [Bacillus thuringiensis str. Al
           Hakam]
          Length = 807

 Score =  659 bits (1699), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/884 (33%), Positives = 462/884 (52%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKVF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAAFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEANSEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      ++ E + L  +I E   IL
Sbjct: 411 ---------------FDFTEAQAEAIVSLQLYRLTNTDITALQQEADELNKKIIELQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR  I + +    ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEDQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E I         E      ++VF TK+G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETIIWATVVQNFE--EEKRFIVFVTKNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +        +V  TK G V+R     +   N S      +   D +L        
Sbjct: 491 IKIDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTT 547

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDER 751
             +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + +      
Sbjct: 548 ETVLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWATVVQNFE------ 601

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                       +++FI+ V++ G  K+
Sbjct: 602 -------------------------------------------EEKRFIVFVTKNGMIKK 618

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    +++  R  +   A ++    +   +V +F  +    I+L +     +    +E+ 
Sbjct: 619 TELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 674

Query: 872 IASRATKGVVIFSTAKDERVVS 893
                  GV   +  +D+ V S
Sbjct: 675 PVGVRAAGVKAINLKEDDYVAS 696


>gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
 gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B]
 gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans
           743B]
          Length = 956

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/949 (31%), Positives = 472/949 (49%), Gaps = 88/949 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I   D   +  I  V + + M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKI---DIPTDSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    ++ Y K ARI G+++GK+HPHG++++YDA+  +AQD++ R  LI+G GN+GS+
Sbjct: 58  HLLKAYPDRPYYKSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ KD V+   NY  S  EP VL A+YPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV+DG +A IDN DI    LM  I+GPD PTG +++G+  I +A
Sbjct: 178 GIAVGLATNIPPHNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILIGKDSILSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y +G G + +R  + IEK    R  +V+TE P++ NKA +L+ I+E+  +K+       I
Sbjct: 238 YESGNGRVTLRAKTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGI 297

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           AD+RDESDR G R VIE K        D IL  L + T LQ     NMVA+   KPE   
Sbjct: 298 ADIRDESDRTGIRAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGKPETMG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L  ++  ++EVV RRT+  L  A  R H++ G   A+  +D+++  IR S +   A
Sbjct: 358 LRTMLWHYIEHQKEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             +E+Q  AILEL L RLTGL     
Sbjct: 418 SQNLIAK--------------------------FDFTELQATAILELMLYRLTGLEITAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR--IVEGLLDMEDED 531
             E   L   I++  +IL S   LL +IKQELL +KD+    RRT+    E    ++ ++
Sbjct: 452 EKEYKELSKLIRKLKNILDSERELLNVIKQELLEIKDKYADARRTQIIDDENEAKIDMDE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ GY+KRVP   Y    R       +  R+ D+   +   +T  ++L 
Sbjct: 512 LIVVEDIVITLSNEGYIKRVPQKTY---VRSNSNPQDIEYREGDYNRFIISSNTLETILV 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ K   +P    + +G+ L  I+          I+     +       V F 
Sbjct: 569 FTDNGNMYQFKGNAIPELRWKEKGERLDTIIK-GMNLDSERIVTALSIKDFSGPFNVQFI 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T  G +++  LS F     +  +A+KL    +++SVE    E +   + + T  G     
Sbjct: 628 TNKGIIKKTSLSKFASS-YTKLMAIKLKEDQKLVSVEIFDCEREERFVQILTSQGLTFTV 686

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQV--------------------------ISMAIVL 742
               +   + R   G    ++   D +                          +      
Sbjct: 687 NEPKL-DDSDRMIQGTMLATIPAKDSIEKAEYIEIKPEIKRFRVELTSKGELKVGAKGKE 745

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL--------- 793
           ++ A Y +    +  ++++  +++  +  + ++    ++  +  E               
Sbjct: 746 NSKAVYTDSEARLIIITSEGNVLNIASNVLENVTEPFNIVNSFGEIDKSNKFIGIINVSD 805

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQ 852
             ++ +I+  S++G+ K+TS  +++      +G +       N+   LV    + N+ + 
Sbjct: 806 FKEDSYIIFFSKRGYVKKTSLKEYQGEYLCSQGYKL-----KNDSDELVGASLIKNEAEN 860

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +LV+ KG  IRV  N++    +   GV+  S   ++ V+    I +++
Sbjct: 861 FVLVTQKGMAIRVNCNDVNEMGKIASGVIGISLKDEDFVIYGNTISDND 909


>gi|229174258|ref|ZP_04301791.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
 gi|228609115|gb|EEK66404.1| DNA topoisomerase 4 subunit A [Bacillus cereus MM3]
          Length = 807

 Score =  658 bits (1698), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 458/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEADELNKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++SL + E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANLVSLERDEMIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   D ++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 105/268 (39%), Gaps = 11/268 (4%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVR-GISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V   +SL + + +I   +V + + +    +   ++ 
Sbjct: 555 NKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIWATVVPNFEEEKRFIVFVTRNG 614

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             ++  ++    +  S    +                    I+  +   +       +  
Sbjct: 615 MIKKTELNQYKVQRYSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVS 674

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                  G++A ++ +      + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA 
Sbjct: 675 PVGVRAAGVKAINLKE---DDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAK 731

Query: 878 KGVVIFS-TAKDE-RVVSVERIRESEIV 903
           +G+VIF    ++  R+V +E +R+ E+V
Sbjct: 732 RGLVIFKELKRNPYRIVGIEIVRDDELV 759


>gi|229162429|ref|ZP_04290390.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
 gi|228620908|gb|EEK77773.1| DNA topoisomerase 4 subunit A [Bacillus cereus R309803]
          Length = 807

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/884 (32%), Positives = 458/884 (51%), Gaps = 90/884 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++Q W +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQTWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL DL K+TV+F  N+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDLDKETVEFVSNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 VELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LDEV+  IR S +   A+  L  +           
Sbjct: 362 RSQYELRKAENRQHIVEGLKKALSILDEVIETIRASKDKRNAKDNLSTK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q+ AI+ L+L RLT      +  E + L  +I E   IL
Sbjct: 411 ---------------FGFTEAQSEAIVSLQLYRLTNTDITALEQEADELNKKIIELQSIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S  RLL +IK +L  VK      RR         + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 QSEQRLLHVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTNKGNYIYLPVYEMPEI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + N++SL + E I      P  E      ++VF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANLVSLERDEMIIWATVVPNFE--EEKRFIVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   D ++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V S   +                                               
Sbjct: 688 LKEDDYVASGKPLN---------------------------------------------- 701

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V 
Sbjct: 702 -----GEKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVR 754

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           D++ + + ++K  +  +     R   R + G ++        V+
Sbjct: 755 DDELVYMKTEKHVVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVI 798



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 105/268 (39%), Gaps = 11/268 (4%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +V  TK G V+R     +   N S      +   D +L          +LL T
Sbjct: 498 MIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDILLERFDTNTTETVLLFT 554

Query: 701 KLGQCVRFPISAIRVFAGRN-SVGVR-GISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G  +  P+  +     ++    V   +SL + + +I   +V + + +    +   ++ 
Sbjct: 555 NKGNYIYLPVYEMPEIRWKDLGQHVANLVSLERDEMIIWATVVPNFEEEKRFIVFVTRNG 614

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
             ++  ++    +  S    +                    I+  +   +       +  
Sbjct: 615 MIKKTELNQYKVQRYSRAFVAVNLKKDDYVVDIFATDGTSDIVLATYGAYALIFHEDEVS 674

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
                  G++A ++ +      + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA 
Sbjct: 675 PVGVRAAGVKAINLKE---DDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAK 731

Query: 878 KGVVIFS-TAKDE-RVVSVERIRESEIV 903
           +G+VIF    ++  R+V +E +R+ E+V
Sbjct: 732 RGLVIFKELKRNPYRIVGIEIVRDDELV 759


>gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657]
 gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Bf]
 gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           Ba4 str. 657]
          Length = 956

 Score =  658 bits (1697), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/939 (30%), Positives = 462/939 (49%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP +L A++PN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VI   ++      +  L  LY+ T LQS  S NMVAL   KP+   L  +LK +V 
Sbjct: 308 GIRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++   
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +++Q  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T
Sbjct: 462 INKLTKILKSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDVEEIIVEEDVVLT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ 
Sbjct: 522 LSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I       +  +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFTAQKD---MLFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN +G +   +   D +                 IS                +++   +
Sbjct: 695 -RNIIGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       ++    EE  ++   +  + ++          ++  I   S
Sbjct: 754 SKTLVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           EKG  KRT   + +I      G         ++   LV++      +Q  I+++++K  +
Sbjct: 814 EKGLIKRTLLGELKIE-----GNSTQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    + E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILASIVDEND 907



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 53/413 (12%), Positives = 129/413 (31%), Gaps = 22/413 (5%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F          R+   +     R        I      + + +I    N    +  
Sbjct: 523 SNEGFTKRIALKSYNRSSANVEDIEYREGDFNRFLIQCN-TKDTLCLITKEGNMYQIKVI 581

Query: 417 LM-QRSWNASDIK--DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + +  W    +K  ++I  ID S   I +      +  Q   +       +     D  
Sbjct: 582 NIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFT-AQKDMLFITDSGYIKKTTLDKF 640

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
                 +     +  + L     +    +++  ++K +      +  +E       +  I
Sbjct: 641 NTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQ---KGLSFNIEEPSLEPVDRNI 697

Query: 534 VREDMVVTVSHL--GYVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           +   +   + +     V       Y++       +G   +    ++         +  ++
Sbjct: 698 IGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKTL 757

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F   G  Y    + L     +    +              +++          ++ + 
Sbjct: 758 VLFDDEGKAYYIPAFMLQSIKEEGINISAFT-------GDKISLLNAISTFRFEEDISIY 810

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVR 707
           F+++ G ++R  L +      S ++       D+++S+      ++ +IL+ T+    +R
Sbjct: 811 FSSEKGLIKRTLLGELKIEGNSTQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMVIR 870

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           F   A+    G+ + GV GISL   D+VI  +IV   D    +     K    
Sbjct: 871 FKSEAVNPM-GKMASGVTGISLKDLDKVILASIVDENDTRKIKIKTKAKDKGT 922


>gi|284031379|ref|YP_003381310.1| DNA topoisomerase [Kribbella flavida DSM 17836]
 gi|283810672|gb|ADB32511.1| DNA topoisomerase (ATP-hydrolyzing) [Kribbella flavida DSM 17836]
          Length = 816

 Score =  658 bits (1696), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/853 (33%), Positives = 411/853 (48%), Gaps = 88/853 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              +  E+ E+ I  V ++DEM+ S+L YA +VI  RA+PD RDGLKPV RRILF M + 
Sbjct: 6   STTAEPEDFEERILDVDVSDEMRTSFLEYAYSVIYSRALPDARDGLKPVQRRILFSMAEN 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +  ++ +VK AR+ GEVMGKYHPHG+ AIYDAL R AQ WS+R+ LI+G GNFGS+D D
Sbjct: 66  NIRPDRGHVKSARVVGEVMGKYHPHGDGAIYDALVRTAQPWSMRVPLIDGHGNFGSLD-D 124

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTECR+   A  + + L ++ VDF+PNYDG  +EP VL A +PN+LVNG  GIA
Sbjct: 125 GPAAMRYTECRMAPPAMAMTNGLDENVVDFKPNYDGQEEEPAVLPAAFPNLLVNGAAGIA 184

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV     +I +P  DLD LM  + GPD PTG  I+G  GIK+AYAT
Sbjct: 185 VGMATNMAPHNLVEVVQALRHLIKHPKADLDDLMRFVPGPDLPTGGKIVGLEGIKDAYAT 244

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS  +R  + IE  +  R+ IVVTE+PY V    ++EKI  LV+ K++  IAD++D +
Sbjct: 245 GRGSFKMRATARIENVTPRRKGIVVTELPYTVGPEKVIEKIKTLVQAKKLQGIADVKDLT 304

Query: 304 DR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR  G R+VIE+K G   + +L QLY+ T L+  FS+N V L   +P    L  +L  ++
Sbjct: 305 DRSHGTRLVIEVKNGFVPEALLEQLYKLTPLEDSFSINAVCLVDGQPRTLGLRELLDVYL 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +V  RR+++   KA+DR H++ GL IA+ ++DEV++IIR S +   AR  L+    
Sbjct: 365 EHRYDVTRRRSEFRRKKAQDRLHIVDGLLIAILDIDEVIQIIRSSDDAGAARTRLI---- 420

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSEVQ   IL++ L RLT   + ++  E   L  
Sbjct: 421 ----------------------DIYDLSEVQANYILDMPLRRLTKFSKLELETEKAELER 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMV 539
           EI++   IL   + L  I+ +EL  V     TPRRT ++E     +          +   
Sbjct: 459 EIEKLTAILEDEALLRKIVSEELADVAKTYGTPRRTVLLESSGAAKTAAVPLEVTDDPCW 518

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R              G      + +  V+ +   +     L  +S G + 
Sbjct: 519 VLMSSAGLLAR-------TNGVEPFGDGEGRAKHDAIVSAVKSTARGQYGL-ITSAGRLI 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVR 658
           + +   LP     A    L     + +   +               ++ V   T  G V+
Sbjct: 571 RLESLDLPAVPTTANAPNLQGGAPIAEFVELEAGERALALTTMDPESVGVALGTATGVVK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          R     ++L   D ++ +VE  T E ++       Q + F  S +R   
Sbjct: 631 RVVPDHLSN--RDSWEIIRLADGDRVVGAVELATGEEELCFIASDAQLLHFNASVVRP-Q 687

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + G+ GI L+ G +V+    V  A   +   +                         
Sbjct: 688 GRTAGGMAGIRLSAGAKVVFFGAVDPARESHVVTVAGSSSALPG---------------- 731

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                     +E G  K T   ++    R   G+R   + K  +
Sbjct: 732 --------------------------TEVGAVKVTPFSEYPGKGRGTGGVRCQRLLKGED 765

Query: 838 IGAL--VAVFPVN 848
              L  V   PV 
Sbjct: 766 GLLLGFVGTAPVK 778



 Score = 42.5 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 55/179 (30%), Gaps = 15/179 (8%)

Query: 730 AKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           AK D ++S               A    R+  +   +      + + +    +     +E
Sbjct: 543 AKHDAIVSAVKSTARGQYGLITSAGRLIRLESLDLPAVPTTANAPNLQGGAPIAEFVELE 602

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                     +  +   +   +  G  KR       +SNR      + ++ ++ +   +V
Sbjct: 603 AGERALALTTMDPESVGVALGTATGVVKRVVPDH--LSNRD-----SWEIIRLADGDRVV 655

Query: 843 AVF-PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                    +++  ++    L+    + +R   R   G+     +   +VV    +  +
Sbjct: 656 GAVELATGEEELCFIASDAQLLHFNASVVRPQGRTAGGMAGIRLSAGAKVVFFGAVDPA 714


>gi|226312849|ref|YP_002772743.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
 gi|226095797|dbj|BAH44239.1| DNA topoisomerase IV subunit A [Brevibacillus brevis NBRC 100599]
          Length = 847

 Score =  657 bits (1695), Expect = 0.0,   Method: Composition-based stats.
 Identities = 305/917 (33%), Positives = 465/917 (50%), Gaps = 126/917 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I + S  + M   +  YA  VIL RAIPD RDGLKPV RRIL+ M Q G   +K Y 
Sbjct: 3   SNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG YHPHG++AIY+ + RMAQ W +R +LI+G GNFGS+D DPPAA RYTE
Sbjct: 63  KSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A+ LL D+ KDTV F PNYD S Q+P VL +R+PN+LVNG  GIAVG AT+IPT
Sbjct: 123 SRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  VA + NP+I LD LM+ ++GPDFPTG ++ G +GI+ A+ TGRG  +IRG
Sbjct: 183 HNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGGIVQGLSGIRKAFETGRGQFIIRG 242

Query: 253 VSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-----DRQ 306
            +H+E+  G   ++IVV+EIPY+V K+ ++ +I ELV E++I     +RDE+     +++
Sbjct: 243 KTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQK 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             R+V+++++ A    ILN LY+ T LQ  ++ NM  ++     +  L  +L A++  ++
Sbjct: 303 KVRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVIHEGTIRQMGLKALLGAYIDHQK 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV  R +Y L++ + R H++ GL  A + L ++V  I  S +   A++ +M++      
Sbjct: 363 EVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEK------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  ++ Q  AIL ++LA LT L    +  EL +L  EI+E
Sbjct: 417 --------------------YGFTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEE 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSH 544
              IL+S  +L+ +I  EL  +K +    R T I   + +++ +  +    ED +VT+++
Sbjct: 457 LKSILASEKKLIQVITGELNEIKKKYAEERLTEIQGEIEEIKIDIAMQINAEDCIVTLTN 516

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GY+KR     +++    G       +++ D V      +T  + LFF+  G  +   V 
Sbjct: 517 EGYIKRTSPRSFKSV---GGTLETCGVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVN 573

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
             P    +  G AL+NI+ L + +RI         +     LYV   +K+G +++  LS+
Sbjct: 574 AFPDDKWKDIGSALVNIIPLEKNQRIVGFTIVENFK---QPLYVYHVSKNGLMKKTALSE 630

Query: 665 FIQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +     S  +A KL   D E ++V    +   IL  TK G  +RF  S +    GR S G
Sbjct: 631 YETNRSSALVAAKLKGGDDEFMNVFVADEAGAILGATKDGMGIRFQRSEVSA-TGRASSG 689

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+LA GD VI+M  +   D+     +                               
Sbjct: 690 VKAIALAPGDDVITMLPIEEVDSRAFSLL------------------------------- 718

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                               + +G  KRT+     +  R+GKG++     K N    LVA
Sbjct: 719 --------------------TAEGVVKRTAIGAIPLQARAGKGVQLIRKRKNNPH-ELVA 757

Query: 844 VFPVN--------------DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           +F                 + +Q+ +V+++G + R  +           GV         
Sbjct: 758 MFLEETVYAWTSQNEWTLVETEQV-IVNEQGGIGRQLIEG---------GVK-------- 799

Query: 890 RVVSVERIRESEIVDEA 906
            V     +   E  DEA
Sbjct: 800 AVAFETILPTDEPKDEA 816


>gi|152975973|ref|YP_001375490.1| DNA topoisomerase IV subunit A [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024725|gb|ABS22495.1| DNA topoisomerase IV, A subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 807

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/834 (34%), Positives = 449/834 (53%), Gaps = 40/834 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2   QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVNDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ R++QDW +R +L+E  GN GSVDGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKVRNVLVEMHGNNGSVDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ K+TV+F PN+D + +EPVVL A +PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIASELLRDIDKETVEFVPNFDDTSEEPVVLPAMFPNLLVNGSTGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+LGEV+D  +  ID P+  +D L+ II+GPDFPTG +I G  GIK AY TG+G I+IR
Sbjct: 182 PHHLGEVIDATMMRIDKPNCTVDDLLAIIKGPDFPTGGIIQGIDGIKKAYETGKGKIIIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G + +E   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RDE+DR G R+V
Sbjct: 242 GKAEVETIRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRDETDRTGLRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A++  ++EVV R
Sbjct: 302 IELKKEANAEGILNYLYKNTDLQITYNFNMVAINNRRPTLMTLPNILDAYIGHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L+ +           
Sbjct: 362 RSQYELRKAENRQHIVEGLMKALSILDQVIETIRASKDKRNAKDNLIAK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT      + NE   L  +I     IL
Sbjct: 411 ---------------FSFTEAQAEAIVSLQLYRLTNTDITALENEAEELNQKITTLQAIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S  +LL +IK +L  VK      RR+        + ++ E  I +ED++VTV+  GYVK
Sbjct: 456 NSEKKLLQVIKADLKRVKKTYSDERRSVIEEEIEEIKIDVEVMIPQEDVIVTVTKEGYVK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A            M++ D + + F  +T  +VL F++ G      V+ +P  
Sbjct: 516 RTGWRSHNASNGKD-----FGMKEGDVLLERFDTNTTETVLLFTNKGNYIYLPVYEMPDI 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ + NI+SL++ E +      P  E      +VVF T++G +++ +L+ +    
Sbjct: 571 RWKDLGQHVANIVSLDRDETLIWATVVPNFE--EEKRFVVFVTRNGMIKKTELNQYKVQR 628

Query: 670 R-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                +A+ L   DE++ +      +DI+L T     + F    +     R + GV+ I+
Sbjct: 629 YSRAFVAINLKKDDEVVDIFATDGTSDIVLATHGAYALIFDEEEVSPVGVRAA-GVKAIN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D V +   +      +            +   I   T     L     ++ N    
Sbjct: 688 LKEDDYVAAGKPLNSEKDQFMLVTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPYRI 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              E+   ++ +   +EK   +      FR  +R   G    DV   NE G +V
Sbjct: 748 VGIEVIRDDELVYMKTEKQIVEEIDPKTFRNKDRYSNGSLVLDV---NETGEVV 798



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 106/273 (38%), Gaps = 11/273 (4%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
              +        +V  TK G V+R     +   N S      +   D +L          
Sbjct: 493 IDVEVMIPQEDVIVTVTKEGYVKRT---GWRSHNASNGKDFGMKEGDVLLERFDTNTTET 549

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRN-SVGVRGI-SLAKGDQVISMAIVLHADADYDERIC 753
           +LL T  G  +  P+  +     ++    V  I SL + + +I   +V + + +    + 
Sbjct: 550 VLLFTNKGNYIYLPVYEMPDIRWKDLGQHVANIVSLDRDETLIWATVVPNFEEEKRFVVF 609

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             ++   ++  ++    +  S    +       E            I+  +   +     
Sbjct: 610 VTRNGMIKKTELNQYKVQRYSRAFVAINLKKDDEVVDIFATDGTSDIVLATHGAYALIFD 669

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRI 872
             +         G++A ++ +      + A  P+N + DQ +LV+ +G + R+  +EI  
Sbjct: 670 EEEVSPVGVRAAGVKAINLKE---DDYVAAGKPLNSEKDQFMLVTQRGAVKRLKASEIEK 726

Query: 873 ASRATKGVVIFS-TAKDE-RVVSVERIRESEIV 903
           ++RA +G+VIF    ++  R+V +E IR+ E+V
Sbjct: 727 STRAKRGLVIFKELKRNPYRIVGIEVIRDDELV 759


>gi|289642471|ref|ZP_06474616.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
 gi|289507730|gb|EFD28684.1| DNA gyrase, A subunit [Frankia symbiont of Datisca glomerata]
          Length = 744

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 315/811 (38%), Positives = 449/811 (55%), Gaps = 91/811 (11%)

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           R+AQ WSLR  L++G GNFGS   DPPAA RYTE RL   A  +L D+ +DTVDF PNYD
Sbjct: 2   RLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTESRLAPLAMEMLRDIDQDTVDFAPNYD 61

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL----D 214
           G  QEP +L +R+PN+LVNG GGIAVGMATNIP HNL EV DG    + +PD       +
Sbjct: 62  GRSQEPTILPSRFPNLLVNGAGGIAVGMATNIPPHNLREVADGVKWFLAHPDASDSELLE 121

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           AL+E+I+GPDFPT  +I+GR GI++AY TGRGSI +R V  +E+    R Q+VVTE+PYQ
Sbjct: 122 ALLELIKGPDFPTAGLIVGRQGIEDAYRTGRGSIRMRAVVQVEENK-GRTQLVVTELPYQ 180

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           VN   + EKIAELVR+ RI  I+D+RDE S R G R++I+LKR A A V+LN LY++T L
Sbjct: 181 VNPDNLAEKIAELVRDNRISGISDIRDETSARTGQRLIIDLKRDAVAKVVLNNLYKHTQL 240

Query: 334 QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           Q  F VNM+A+    P    L  +++ +V  + +V+VRRT+Y L KAR+R HVL GL IA
Sbjct: 241 QDTFGVNMLAIVDGVPRTLRLDQMVRYYVDHQVDVIVRRTRYQLRKARERLHVLEGLLIA 300

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + +LDEV+ +IR + + + AR +LM R                            LSE+Q
Sbjct: 301 LDHLDEVINLIRNAESADAARGQLMDR--------------------------FSLSEIQ 334

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             AIL+++L RL  L R  I +E   L  +I E   IL+S +R   II +EL  + D   
Sbjct: 335 AVAILDMQLRRLAALERQKIIDEAAELRAKIAELEAILASPARQREIIGEELTEIVDRFG 394

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRTR+V    DM  ED I RED+VVTV+  GY KR    +YR+QRRGGKG  G  +R+
Sbjct: 395 DERRTRLVPFEGDMSVEDLIAREDVVVTVTRGGYAKRTKTDLYRSQRRGGKGVQGAALRE 454

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           +D V   F+ +TH  +LFF++ G VY+ K   LP  +  A+G+ + NIL+  Q ERI  +
Sbjct: 455 DDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARTAKGQHVANILAFGQDERIAEV 514

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M   +        Y+V AT+ G  ++  L++F      G +A+ L   DE+++    +  
Sbjct: 515 MAIKDY---QAAPYLVLATRRGLCKKTALAEFDSNRSGGLVAINLRDDDELIAARLVSAG 571

Query: 694 NDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           +D+LL ++  Q +RF      +R   GR + GV G+     D++++M +V          
Sbjct: 572 DDLLLVSRQAQSIRFHADDEQLRPM-GRATSGVIGMRFDSDDELLAMEVVPP-------- 622

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                        E  +L  +  G+ K+
Sbjct: 623 -------------------------------------------ESEANLLVATSGGYAKQ 639

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           TS  ++ +  R GKG+    +  ++  G LV    V+ +DQ+  ++  G ++R    ++R
Sbjct: 640 TSLGEYPVQGRGGKGVLTAKI--VSTRGGLVGALVVSPDDQLYAITSNGGVLRTVARDVR 697

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEI 902
            A R T GV +       +VV V R  ++E 
Sbjct: 698 RAQRQTMGVRLIDLEAGVQVVGVARNADAED 728


>gi|313623959|gb|EFR94061.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL J1-023]
          Length = 818

 Score =  657 bits (1694), Expect = 0.0,   Method: Composition-based stats.
 Identities = 285/884 (32%), Positives = 469/884 (53%), Gaps = 93/884 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++E   L  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F++ G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I +++              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSVIAIDSFT---EQKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+L+V       DI L TK G  +R+PI+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKE-DELLNVYLIDGTEDIFLATKNGYGLRYPIAEIPESGARTA-GVKA 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L +GD VI   ++   D                                         
Sbjct: 687 INLKQGDVVIGGVVLTPND----------------------------------------- 705

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 706 ----------NKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLIL 754

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
            +  D + + +++  ++ + V  +R+  R + G  +   T + E
Sbjct: 755 ADSKDHLFIETNREQIVEIDVANLRVTDRYSNGSFVLDETMEGE 798



 Score = 82.5 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 88/256 (34%), Gaps = 57/256 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R     +   N +    + +   D  + ++     + +LL T  G  + 
Sbjct: 507 IVSVTKEGYVKRTSQRSYAASNGAE---LAMKEADHAIFIQKMNSLDSLLLFTNKGNFIY 563

Query: 708 FPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +             I     GD V                               
Sbjct: 564 RPVHELPD-----------IRWKNLGDHV------------------------------- 581

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                 + L +D S    I      +   +++  L V++ G  K+++  +++   R  K 
Sbjct: 582 ------SHLASDLSAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSAITNYKPQ-RYSKS 634

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A  + +      L+ V+ ++  + I L +  G  +R P+ EI  +   T GV   +  
Sbjct: 635 MMAIKLKE----DELLNVYLIDGTEDIFLATKNGYGLRYPIAEIPESGARTAGVKAINLK 690

Query: 887 KDERVVSVERIRESEI 902
           + + V+    +  ++ 
Sbjct: 691 QGDVVIGGVVLTPNDN 706


>gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
 gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736]
          Length = 818

 Score =  656 bits (1693), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/897 (33%), Positives = 437/897 (48%), Gaps = 104/897 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMS 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+ +A   + D + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I +P+ DLDALM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YETGRGTFKMRATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFTVVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +                            LS+VQT+ IL+  L RLT   R ++  E + 
Sbjct: 425 Q--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELETEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI+E   IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LNAEIEELTRILESDAELRKLVSSELATVAKKFGTDRRTDLLESGGAPVATVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A+  G K          D +      +    +   +S G 
Sbjct: 519 CRVLLSSTGLLARTANGEPFAENAGAKRV------KHDVIVSAVPATARGEIGAVTSAGR 572

Query: 598 VYKEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP                L   LSL   E +  +    E     ++  +   
Sbjct: 573 LLRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVCLTTLDE-----SSPGLAIG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R          +     + L   D I+ +VE  T + D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPDYPSH--KEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   GR + GV GI LA+G +VIS   V  A       +   +         +    
Sbjct: 686 SVVRP-QGRPAGGVAGIKLAEGVKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTT---- 740

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K T    +    R+  G+R  
Sbjct: 741 --------------------------------------AKLTPFDQYPRKGRATGGVRCQ 762

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS--RATKGVVIFST 885
              K  +  +L    P       +     GT       E+      R   GV +  T
Sbjct: 763 RFLKGEDCLSLAWAGPAPA----LAAQKNGT-----PAELPEMDPRRDGSGVSLAKT 810



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 62/195 (31%), Gaps = 20/195 (10%)

Query: 719 RNSVG-----VRGISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLIS 766
           R + G       G    K D ++S         I     A    R+  +        + +
Sbjct: 531 RTANGEPFAENAGAKRVKHDVIVSAVPATARGEIGAVTSAGRLLRLNVIDLPQLPESMPT 590

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            +      L    S+E + +      L      +   +E+G  KR    D+         
Sbjct: 591 PNLAGGAPLAEFLSLEDDETVVCLTTLDESSPGLAIGTEQGVVKRV-VPDYPSHK-EELE 648

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           +         E   +V    +   D+ ++ ++D   L+R   + +R   R   GV     
Sbjct: 649 VITLK-----EGDRIVGAVELRTGDEDLVFITDDAQLLRYQASVVRPQGRPAGGVAGIKL 703

Query: 886 AKDERVVSVERIRES 900
           A+  +V+S   +  +
Sbjct: 704 AEGVKVISFTAVDPA 718



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 87/272 (31%), Gaps = 31/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +    N   K        D I+S    T   +I   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANGEPFAENAGAKRV----KHDVIVSAVPATARGEIGAVTSAG 571

Query: 704 QCVRFPISAIR----VFAGRNSVGVRGI----SLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +          N  G   +    SL   + V+ +  +  +          +
Sbjct: 572 RLLRLNVIDLPQLPESMPTPNLAGGAPLAEFLSLEDDETVVCLTTLDES-----SPGLAI 626

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  ++ ++ +++     R  + 
Sbjct: 627 GTEQGVVKRVVPDYPSHKEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYQAS 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    +++  +   +++   V+     ++ +    +GTL          
Sbjct: 687 VVRPQGRPAGGVAGIKLAEGVK---VISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKL 743

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E  +S+  
Sbjct: 744 TPFDQYPRKGRATGGVRCQRFLKGEDCLSLAW 775


>gi|16800394|ref|NP_470662.1| DNA topoisomerase IV subunit A [Listeria innocua Clip11262]
 gi|16413799|emb|CAC96557.1| parC [Listeria innocua Clip11262]
          Length = 818

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 469/884 (53%), Gaps = 93/884 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++E   L  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISILEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S++ F++ G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLILFTNKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I +++              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSVIAIDSFT---EQKRFLFVTKNGMTKQSTITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+L+V       DI L T+ G  +R+PI+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKE-DELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKA 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L +GD VI   ++   D                                         
Sbjct: 687 INLKQGDVVIGGVVLTPND----------------------------------------- 705

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 706 ----------NKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLTL 754

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
            +  D + + +++  ++ + V  +R+  R + G  +   T + E
Sbjct: 755 ADSKDHLFIETNREQIVEIDVANLRVTDRYSNGSFVLDETMEGE 798



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 88/256 (34%), Gaps = 57/256 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G V+R     +   N +    + +   D  + ++     + ++L T  G  + 
Sbjct: 507 IVSVTKEGYVKRTSQRSYAASNGAE---LAMKEADHAIFIQKMNSLDSLILFTNKGNFIY 563

Query: 708 FPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            P+  +             I     GD V                               
Sbjct: 564 RPVHELPD-----------IRWKNLGDHV------------------------------- 581

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                 + L +D S    I      +   +++  L V++ G  K+++  +++   R  K 
Sbjct: 582 ------SHLASDLSAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQSTITNYKPQ-RYSKS 634

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A  + +      L+ V+ ++  + I L +  G  +R P+ EI  +   T GV   +  
Sbjct: 635 MMAIKLKE----DELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTAGVKAINLK 690

Query: 887 KDERVVSVERIRESEI 902
           + + V+    +  ++ 
Sbjct: 691 QGDVVIGGVVLTPNDN 706


>gi|162606026|ref|XP_001713528.1| DNA gyrase A-subunit [Guillardia theta]
 gi|13794448|gb|AAK39823.1|AF165818_31 DNA gyrase A-subunit [Guillardia theta]
          Length = 877

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/896 (32%), Positives = 480/896 (53%), Gaps = 90/896 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++  I +  + +EM  SY+ YA++VI GRA+PD+RDGLKPVHRRILF M ++ +    
Sbjct: 59  TNDKTRIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEA 118

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCAR+ GEV+GKYHPHG+ A+YD+L RM+Q++S+R +LI G GNFGS+D DPPAA R
Sbjct: 119 PYRKCARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPPAAMR 178

Query: 130 YTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTEC+L   +   LL +L   TV++  N+DGS  EP ++ +  P++L+NG  GIAVGMAT
Sbjct: 179 YTECKLSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMAT 238

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGE+V  C+A+IDN +I    L++ +  PDFPTG +I+G    K+ Y  G  SI
Sbjct: 239 SIPPHNLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLIIGNNSCKDLYEKGISSI 298

Query: 249 VIRGVSHIEK----TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           ++RG  ++E         +  +++TEIP+Q+NK+ ++ K+A+LV  K I  I+D+RDESD
Sbjct: 299 ILRGKINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESD 358

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIE+KR      I+  + + +SLQ  FS  M+ +   +P    L  IL  F+ F
Sbjct: 359 RKGIRIVIEIKRDYDPIKIVKIILKKSSLQITFSSYMLCIVDKQPILVNLKEILSLFLHF 418

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R +++ +  K+ L     + ++L G++I++  +D  +  I+ S N   A+  LM+     
Sbjct: 419 RRKIIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME----- 473

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   LS+ Q+ AIL L+L RLT L    I N+       +
Sbjct: 474 ----------------------FGLSQEQSEAILNLQLRRLTKLESKKIDNDFEITKSSL 511

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE--DMVVTV 542
            E   ILSS   + GIIK ++ ++ +    PR+T ++  + +   E+    E  + V+ +
Sbjct: 512 NELKCILSSNILIDGIIKNQIKNISEIYGFPRKTLLINSINENIIEELETIENYESVIMI 571

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +   Y+K++ L  + +Q RG KG+ G+++ D D ++  F  +    ++  SS G  YK K
Sbjct: 572 TQY-YIKKMFLESFESQTRGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIK 630

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V R+PI    ++G  +++IL   +  +I++I+            ++V  T+ G ++R  +
Sbjct: 631 VSRIPISKRNSKGTPILSILKGLENNQISSIIATSN---CETEKFLVLLTQKGLIKRTSI 687

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNS 721
           S+F  I+  G I + LD  D +  V  C  ++ ++++TK G+ +RF  S   +   GR S
Sbjct: 688 SNFNNISSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTS 747

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G++ I L   D +    I+                                        
Sbjct: 748 KGIKSIDLDSNDIISDFDIIPSQAITN--------------------------------- 774

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                            FI+ ++E G+GKR    + +I  R  KGI+   + + N    L
Sbjct: 775 -----------------FIILLTEMGYGKRIKVTELKIQKRGKKGIKVISLRE-NVNDYL 816

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++     +N++I++ +  G +++  +++I +  + +KG++I    + ++V  +  I
Sbjct: 817 ISSRFCIENEEILISTSYGNVVKQKISDIAVQKKNSKGIIIQRLTEGDKVSKISII 872



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 73/188 (38%), Gaps = 12/188 (6%)

Query: 719 RNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R + G RG+ ++ GD++    S        A     I Y   +S                
Sbjct: 589 RGTKGKRGLIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTPILS 648

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSK 834
                    IS          E+F++ +++KG  KRTS  +F  IS+R         +  
Sbjct: 649 ILKGLENNQISSIIATSNCETEKFLVLLTQKGLIKRTSISNFNNISSRG------LIILT 702

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN--EIRIASRATKGVVIFSTAKDERVV 892
           ++E  +L  V    ++D +I+ + KG L+R   +  E++   R +KG+       ++ + 
Sbjct: 703 LDENDSLKWVRKCYNDDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIIS 762

Query: 893 SVERIRES 900
             + I   
Sbjct: 763 DFDIIPSQ 770



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 11/214 (5%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             E  +V ++  G +KR  +S +       +G   + + + D +  +       SV+  +
Sbjct: 668 ETEKFLVLLTQKGLIKRTSISNFN--NISSRGLIILTLDENDSLKWVRKCYNDDSVIIST 725

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G + +             R    I  + L+  + I+     P    +    +++  T+
Sbjct: 726 KKGKLLR-FNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQAITN---FIILLTE 781

Query: 654 HGNVRRNKLSDFIQINR--SGKIAMKLDSR--DEILSVETCTQENDILLTTKLGQCVRFP 709
            G  +R K+++     R   G   + L     D ++S   C +  +IL++T  G  V+  
Sbjct: 782 MGYGKRIKVTELKIQKRGKKGIKVISLRENVNDYLISSRFCIENEEILISTSYGNVVKQK 841

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
           IS I     +NS G+    L +GD+V  ++I+  
Sbjct: 842 ISDI-AVQKKNSKGIIIQRLTEGDKVSKISIINS 874


>gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           NCTC 2916]
 gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A2 str. Kyoto]
          Length = 956

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/939 (30%), Positives = 462/939 (49%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP VL A+YPN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVI---ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VI   ++      +  L  LY+ T LQS  S NMVAL   KP+   L  +LK +V 
Sbjct: 308 GIRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKSMLKYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  L+++   
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +++Q  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDIQAEAILELMLYKLTGLEVVAFEKEYKELEKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   IL S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T
Sbjct: 462 INKLTKILKSEKELLKVIKKELIEVKETYNDKRRTAIIEDDEKAKIDVEEIIVEEDVVLT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ 
Sbjct: 522 LSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I       +  +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFTAQKD---MLFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++    V+   +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGESLVKSDLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN +G +   +   D +                 IS                +++   +
Sbjct: 695 -RNIIGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       ++    EE  ++   +  + ++          ++  I   S
Sbjct: 754 SKTLVLFDDEGKAYYIPAFMLQSIKEEGVNISAFTGDKISLLNAISTFRFEEDISIYFSS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           EKG  KRT   + +I      G         ++   LV++      +Q  I+++++K  +
Sbjct: 814 EKGLIKRTLLGELKIE-----GNSTQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    I E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILALIIDEND 907



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 76/218 (34%), Gaps = 12/218 (5%)

Query: 547 YVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            V       Y++       +G   +    ++         +  +++ F   G  Y    +
Sbjct: 713 KVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKTLVLFDDEGKAYYIPAF 772

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L     +    +              +++          ++ + F+++ G ++R  L +
Sbjct: 773 MLQSIKEEGVNISAFT-------GDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLGE 825

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 S ++       D+++S+      ++ +IL+ T+    +RF   A+    G+ + 
Sbjct: 826 LKIEGNSTQVYKFKHKDDKLVSILIKEHEEQKNILIITEKAMVIRFKSEAVNPM-GKMAS 884

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           GV GISL   D+VI   I+   D    +     K    
Sbjct: 885 GVTGISLKDLDKVILALIIDENDTRKIKIKTKAKDKGT 922


>gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
 gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302]
          Length = 586

 Score =  655 bits (1690), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/604 (49%), Positives = 416/604 (68%), Gaps = 27/604 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EPVVL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVV R
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTSFGFNMLAIQNGVPKILSLRQILDAYIEHQKEVVTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S   E A+ ELM +           
Sbjct: 362 RTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDELIALIADLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKR 550
           +   R+  IIK+EL  VK +   PRRT ++ G +   EDED I   D+++T+S+ GY+KR
Sbjct: 456 AKPERVAQIIKEELDEVKRKFGDPRRTELMVGEVLTLEDEDLIEESDVLITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P   
Sbjct: 516 LDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYG 575

Query: 611 PQAR 614
             A+
Sbjct: 576 RTAK 579



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 83/210 (39%), Gaps = 19/210 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++ +   ++ ++     +     +F +S       R S  +  + L      
Sbjct: 382 IALDHIDEVIRIIRASETDE---EAQAELMSKFKLSE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ S    ++       D      +     +  +     +    +    + G +   
Sbjct: 433 ERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGDPRRTELMVGEVLTL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +   ++T+S KG+ KR    +F    R G+G++ T V   + +  LV+    +
Sbjct: 493 EDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVST---S 549

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATK 878
            +D ++  ++KG + R+   EI    R  K
Sbjct: 550 THDHLLFFTNKGRVYRLKGYEIPEYGRTAK 579


>gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
 gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790]
          Length = 789

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/885 (32%), Positives = 447/885 (50%), Gaps = 106/885 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++NSYL YA++VI+ RAIPD+RDGLKPV RRI++ M ++ +  +K Y K ARI G
Sbjct: 4   PIEEEIKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVG 63

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E MGKYHPHG++AIYDALARM+QD+SLR  L++GQGNFGS+DGD PAA RYTE RL + A
Sbjct: 64  ETMGKYHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIA 123

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++ D+ K+TV F PN+DGS  EPV   ++ P +L+NG  GIAVGMATN+  HNL EV 
Sbjct: 124 EEMIRDIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVC 183

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D     ID+ D  L  L++ I+GPDFP G +I     + + Y TG G ++ RG    E  
Sbjct: 184 DAIKYKIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKDMIDIYKTGHGKVICRGSIEAED- 242

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
               ++I++  +PY +NKA  ++ +A LV   +I +I+D++DESDR G R+VI++K    
Sbjct: 243 ----KRIIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHDR 298

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
            D+++NQLY  T L++  SV  + L    P    L  ++K F+ FR +V+ +R++Y L K
Sbjct: 299 IDLVVNQLYEKTQLETSISVTNLVLLDNVPVVMNLEDLIKNFIGFRLDVIKKRSEYDLKK 358

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +R H+L GL IA+ N+D V++IIR S +  +AR  L++                    
Sbjct: 359 LNERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKE------------------- 399

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                  + L+E Q  AIL++RL RLT L    ++ E++ +  +I+   D++++ +    
Sbjct: 400 -------LSLTEAQANAILDMRLQRLTALEISKLKEEIDEINKKIEYLSDVVNNENTRKN 452

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           ++K EL  +K +    RRT        +E E     E+ ++                   
Sbjct: 453 VLKAELDEIKKQYGDRRRT------EVIEGEISRRDEEDLI------------------- 487

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
                                       SV+  S  G + +  +          RG    
Sbjct: 488 ------------------------PNEESVIILSEKGLLKRVSLDEYKSQRRGGRG---- 519

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR-----SGKI 674
               +    R    +       + + LY  F T  G V + K     + +R     SG  
Sbjct: 520 ----IITNTRDNDSVKSVVSCMAHDTLY--FFTNTGRVLKEKAYRIEKRDRKALGVSGNK 573

Query: 675 AMKLDSRD--EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +KL+  +    +       E+ +++ TK G   +  IS I     R S G++ I+LA  
Sbjct: 574 FLKLNDNEIIRQIIKSPENLEDLLIIVTKNGFIKKTNISEILDM--RKS-GIKIINLANN 630

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D+V+S++ +    +   +      +  A   L         S +   S++ N S      
Sbjct: 631 DEVVSVSEI----SGSSKIFVAASNGKAAVFLSDEVPLTSRSSRGVKSMKLNGSYVISAF 686

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               +  IL+++E G GKRT + +F   +R   G+      +  + G LV   PV D+D+
Sbjct: 687 PVKDDDTILSITENGLGKRTRATEFPEHHRGSSGV--YLFKENEKTGKLVMALPVKDDDE 744

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           II+V+     IR+  ++I I SR   GV +    +++ + +   +
Sbjct: 745 IIIVTKNDQTIRIKSSDISILSRFASGVRLVGLTENDSISTACVV 789



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 64/168 (38%), Gaps = 7/168 (4%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I    +   D         +  +  +    ++    +    +EG IS    ++L   E+
Sbjct: 432 EINKKIEYLSDVVNNENTRKNVLKAELDEIKKQYGDRRRTEVIEGEISRRDEEDLIPNEE 491

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            ++ +SEKG  KR S  +++   R G+GI   +    + + ++V+      +D +   ++
Sbjct: 492 SVIILSEKGLLKRVSLDEYKSQRRGGRGIIT-NTRDNDSVKSVVSCMA---HDTLYFFTN 547

Query: 859 KGTLIRVPVNEIRIASRATKGV---VIFSTAKDERVVSVERIRESEIV 903
            G +++     I    R   GV          +E +  + +  E+   
Sbjct: 548 TGRVLKEKAYRIEKRDRKALGVSGNKFLKLNDNEIIRQIIKSPENLED 595


>gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)]
 gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)]
          Length = 818

 Score =  654 bits (1687), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/847 (34%), Positives = 423/847 (49%), Gaps = 93/847 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+ +AA  + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G  GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YETGRGTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++  +K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 R--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI+E   IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LNAEIEELTRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R           G K          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTANDEPLVTEAGAKRV------KHDLIVSAVPATARGEVGVVTSGGR 572

Query: 598 VYKEKVWR---LPIGSPQAR---GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P      G  L   +SL   E +  +    E     ++  +   
Sbjct: 573 LLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDE-----SSPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R          +     + L   D I+  VE  T + D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPDYPSN--KDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   GR + GV G+ LA G +VIS   V  A       +   +         +    
Sbjct: 686 SQVRP-QGRPAGGVAGVKLADGAKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTT---- 740

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K T    +    R+  G+R  
Sbjct: 741 --------------------------------------AKLTPFDQYPRKGRATGGVRCQ 762

Query: 831 DVSKINE 837
              K  +
Sbjct: 763 RFLKGED 769



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 15/183 (8%)

Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           G    K D ++S         + +        R+  +        + + +      L   
Sbjct: 543 GAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEF 602

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            S+E +        L      +   +E+G  KR    D+  SN+    +         + 
Sbjct: 603 VSLEDDEDVVCLTTLDESSPGLALGTEQGVVKRV-VPDYP-SNKDELEVITLK-----DG 655

Query: 839 GALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             +V    +   D+ ++ ++D   L+R   +++R   R   GV     A   +V+S   +
Sbjct: 656 DRIVGGVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAV 715

Query: 898 RES 900
             +
Sbjct: 716 DPA 718



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    + +      K        D I+S    T   ++ + T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANDEPLVTEAGAKRV----KHDLIVSAVPATARGEVGVVTSGG 571

Query: 704 QCVRFPISAIR----VFAGRNSVGVRG----ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +          N  G       +SL   + V+ +  +  +          +
Sbjct: 572 RLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDES-----SPGLAL 626

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  ++ ++ +++     R  + 
Sbjct: 627 GTEQGVVKRVVPDYPSNKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQAS 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    ++       +++   V+     ++ +    +GTL          
Sbjct: 687 QVRPQGRPAGGVAGVKLADG---AKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKL 743

Query: 865 VPVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
            P ++     RAT GV        ++ +    
Sbjct: 744 TPFDQYPRKGRATGGVRCQRFLKGEDCLAFAW 775


>gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
 gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24]
          Length = 818

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/847 (34%), Positives = 423/847 (49%), Gaps = 93/847 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+ +AA  + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G  GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YETGRGTFKIRATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++  +K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFTVVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 R--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELESEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI+E   IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LNAEIEELSRILDSDAELRKLVSAELAAVAKKFGTDRRTTLLESSGAPVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R           G K          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTANDEPLVTEAGAKRV------KHDLIVSAVPATARGEVGVVTSGGR 572

Query: 598 VYKEKVWR---LPIGSPQAR---GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P      G  L   +SL   E +  +    E     ++  +   
Sbjct: 573 LLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDE-----SSPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R          +     + L   D I+  VE  T + D++  T   Q +R+  
Sbjct: 628 TEQGVVKRVVPDYPSN--KDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   GR + GV G+ LA G +VIS   V  A       +   +         +    
Sbjct: 686 SQVRP-QGRPAGGVAGVKLADGAKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTT---- 740

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K T    +    R+  G+R  
Sbjct: 741 --------------------------------------AKLTPFDQYPRKGRATGGVRCQ 762

Query: 831 DVSKINE 837
              K  +
Sbjct: 763 RFLKGED 769



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 61/183 (33%), Gaps = 15/183 (8%)

Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           G    K D ++S         + +        R+  +        + + +      L   
Sbjct: 543 GAKRVKHDLIVSAVPATARGEVGVVTSGGRLLRVNVVDLPQLPEAMPTPNLAGGAPLAEF 602

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
            S+E +        L      +   +E+G  KR    D+  SN+    +         + 
Sbjct: 603 VSLEDDEDVVCLTTLDESSPGLALGTEQGVVKRV-VPDYP-SNKDELEVITLK-----DG 655

Query: 839 GALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             +V    +   D+ ++ ++D   L+R   +++R   R   GV     A   +V+S   +
Sbjct: 656 DRIVGGVELRTGDEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGVKLADGAKVISFTAV 715

Query: 898 RES 900
             +
Sbjct: 716 DPA 718



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 84/272 (30%), Gaps = 32/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    + +      K        D I+S    T   ++ + T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANDEPLVTEAGAKRV----KHDLIVSAVPATARGEVGVVTSGG 571

Query: 704 QCVRFPISAIR----VFAGRNSVGVRG----ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +          N  G       +SL   + V+ +  +  +          +
Sbjct: 572 RLLRVNVVDLPQLPEAMPTPNLAGGAPLAEFVSLEDDEDVVCLTTLDES-----SPGLAL 626

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  ++ ++ +++     R  + 
Sbjct: 627 GTEQGVVKRVVPDYPSNKDELEVITLKDGDRIVGGVELRTGDEDLVFITDDAQLLRYQAS 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    ++       +++   V+     ++ +    +GTL          
Sbjct: 687 QVRPQGRPAGGVAGVKLADG---AKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKL 743

Query: 865 VPVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
            P ++     RAT GV        ++ +    
Sbjct: 744 TPFDQYPRKGRATGGVRCQRFLKGEDCLAFAW 775


>gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
 gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50]
          Length = 834

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/833 (35%), Positives = 468/833 (56%), Gaps = 36/833 (4%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + +  +       I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  
Sbjct: 9   DFLDENQNHYHGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMND 68

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+  +K + K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DG
Sbjct: 69  LGITSDKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDG 128

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K +++L+ D+  DTV F  NYD S  EP  L    PN+LVNG  GI
Sbjct: 129 DGAAAMRYTEARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGI 188

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAY 241
           AVGMAT+IP HNL EVV    A IDN DI +D ++   I GPDFPTGA++   T ++  Y
Sbjct: 189 AVGMATSIPPHNLKEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTKMREGY 248

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS++IR     E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RD
Sbjct: 249 KTGRGSVIIRAKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRD 307

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ES+ +G R++IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +
Sbjct: 308 ESNYEGIRIIIELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNY 367

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V F+  V+++R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   + A+       
Sbjct: 368 VEFQVNVIIKRSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAK------- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                              I         E Q +AIL++RL RL GL RD I  E+ ++ 
Sbjct: 421 -------------------IQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIK 461

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVV 540
             +     +++++     ++K +L  + D+    RRT +++   +++EDE+ I     ++
Sbjct: 462 ERLTYLDLLINTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMI 521

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  GY++R+    +R Q+RGG+G S  V  ++       +      VLFF++ G VY+
Sbjct: 522 LLSQEGYIRRINPDEFRIQKRGGRGVSVNVEPNDPIDIAT-MGKAKDWVLFFTNSGKVYR 580

Query: 601 EKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            K++ +   S  ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R
Sbjct: 581 TKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKR 638

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            K+S+F  INR+GK A+ L   D+++SV   T ++ I +  + G+ +R   S +     R
Sbjct: 639 TKISEFENINRNGKKAINLRENDQLISVFATTGQDTIFIANESGKVIRIKESVVNP-QSR 697

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
              GVR + L   D V+    +      +   +                +          
Sbjct: 698 VGSGVRALKLEANDVVVGA--ISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVM 755

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           ++     + +      +   IL +S  G   +T   +    +R+  G++A  +
Sbjct: 756 NLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRL 808


>gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712]
          Length = 819

 Score =  654 bits (1686), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/842 (33%), Positives = 409/842 (48%), Gaps = 83/842 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M 
Sbjct: 5   STKTPPPDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMG 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VKCAR+ GEVMGK HPHG+A+IYDA+ RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGFVKCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+  AA  + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G +GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGGRIVGLSGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGS  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YESGRGSFKIRATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVK 304

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRNHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  LM+
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+QT+ IL+  L RLT   R ++  E N 
Sbjct: 425 R--------------------------FSLSEIQTQYILDTPLRRLTKFDRIELETEQNR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI E   IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LNGEIDELTGILESDAELRKLVSAELAAVAKKFATDRRTVLLESAGAPVAAVSLEVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R   +                 + +  ++ +            +S G 
Sbjct: 519 CRVLLSSTGLLARTATAELPPVDPDA-----ARAKHDVILSSVAATQRGDIGAV-TSGGR 572

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNLYVVFATKHGN 656
           + +  V  LP     A    L     L++                   +  +   T  G 
Sbjct: 573 LLRIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCLTTLDEASPGLALGTLQGV 632

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R          +     + L   D I+   E  T + D++  T   Q +R+P + +R 
Sbjct: 633 VKRVVPDYPAN--KDELEVITLKDGDRIVGATELRTGDEDLVFITSDAQLLRYPAAQVRP 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + G+ G+ L+ G  VIS   V  A       +             S         
Sbjct: 691 -QGRPAGGMAGVKLSAGADVISFTAVDPAADAVVFTVAGSTGTLDGSAATS--------- 740

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                             K T    +    R+  G+R     K 
Sbjct: 741 ---------------------------------AKLTPFDQYPRKGRATGGVRCQRFLKG 767

Query: 836 NE 837
            +
Sbjct: 768 ED 769



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 63/211 (29%), Gaps = 22/211 (10%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-------MAIVLHADADYDE 750
           L +  G   R   + +       +        AK D ++S         I          
Sbjct: 522 LLSSTGLLARTATAELPPVDPDAAR-------AKHDVILSSVAATQRGDIGAVTSGGRLL 574

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           RI  +          + +      L    S+E + +      L      +   + +G  K
Sbjct: 575 RIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCLTTLDEASPGLALGTLQGVVK 634

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNE 869
           R    D+   N+    +         +   +V    +   D+ ++ ++    L+R P  +
Sbjct: 635 RV-VPDYPA-NKDELEVITLK-----DGDRIVGATELRTGDEDLVFITSDAQLLRYPAAQ 687

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +R   R   G+     +    V+S   +  +
Sbjct: 688 VRPQGRPAGGMAGVKLSAGADVISFTAVDPA 718



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 31/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++   ++     A      D ILS    TQ  DI   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTATAELPPVDPDAARA----KHDVILSSVAATQRGDIGAVTSGG 571

Query: 704 QCVRFPISAIRVFAGRNSVGVRG--------ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +       S             +SL   + V+ +  +  A           
Sbjct: 572 RLLRIAVIDLPQLPDTASAPNLAGGAPLSEFLSLEADETVVCLTTLDEASPGLALGTLQG 631

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     +   E       D       +     EL+  ++ ++ ++      R  + 
Sbjct: 632 VVKRVVPDYPANKDELEVITLKDGDRIVGAT-----ELRTGDEDLVFITSDAQLLRYPAA 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    +S       +++   V+     ++ +     GTL          
Sbjct: 687 QVRPQGRPAGGMAGVKLSAG---ADVISFTAVDPAADAVVFTVAGSTGTLDGSAATSAKL 743

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E V+ +  
Sbjct: 744 TPFDQYPRKGRATGGVRCQRFLKGEDVLLLAW 775


>gi|257059255|ref|YP_003137143.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
 gi|256589421|gb|ACV00308.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8802]
          Length = 843

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/913 (31%), Positives = 460/913 (50%), Gaps = 116/913 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  QIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A   +L D+ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP H
Sbjct: 132 LASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG VA+ID+P++  + L ++I GPDFPTG  I+ + GI+ AYATGRG I +RG+
Sbjct: 192 NLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGI 251

Query: 254 SHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + IE           R  IVVTE+PYQVNKAA +EK+A+LV + R+  IAD+RDESDR G
Sbjct: 252 TRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A+V+L  LY+ T+LQS F   ++AL   KP + +L  +L+ F+ FRE+
Sbjct: 312 MRVVIELKRDAKANVVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQ 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  + L +A+ R H+L GL IA+ NLD ++ I+R + +  TA+             
Sbjct: 372 TLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRF---------- 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + +S+ Q  AIL + + RLTGL +  +++E + L   I+E 
Sbjct: 422 ----------------QAELGISDAQANAILAMPMRRLTGLEQQKLQSEHSELQTRIEEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-----------VRE 536
             +LS R  LL  +K++L S+K +   PRRTRIV+     +                 +E
Sbjct: 466 QTLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPTVKKEESPAKAKKE 525

Query: 537 DMVVTVSHLGYV---KRVPLSVYRAQRRGGKGRSGVVMRDEDFVT---------DLFIVS 584
           ++  T S        K   L+++  Q         +  + E              +F   
Sbjct: 526 ELPTTSSPKTEESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSSIFRAI 585

Query: 585 THTSV--LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
                  +  + +G  Y   V  +P      +   L+++L     +    ++      + 
Sbjct: 586 IGQKSELMVITDVGKAYPIAVAEIP--PLTLQSIPLLSLLPKGAQKDANRVIDAGFVPND 643

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +   ++  T+ G ++R K+S+   +   G + +KL   D +  V    +  ++++    
Sbjct: 644 PHGYDLLLLTQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVVIAISG 703

Query: 703 GQCVRFPI-SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           G+ +R+P+   +    GR++ G + + L  G++V++   +                    
Sbjct: 704 GRILRYPVTDEVIPLMGRSAQGNQALKLRYGEEVVNCVTLHSQGEVLLISSLGYGKR--- 760

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                  L+++E   GK           
Sbjct: 761 ---------------------------------------LSLTELRLGKL---------- 771

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
               G +    ++  +   L  +    +N Q+  ++++   + + V  I    +   G  
Sbjct: 772 -GDLGTQCLQFTQ--KTDKLAGMIAAKENGQVRFLTNQNRSLAISVETILPWGKDGPGDR 828

Query: 882 IFSTAKDERVVSV 894
           +     +E + +V
Sbjct: 829 LVKLQPEEVITTV 841


>gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str.
           PG1]
 gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str.
           Gladysdale]
          Length = 834

 Score =  653 bits (1685), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/825 (35%), Positives = 466/825 (56%), Gaps = 36/825 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + 
Sbjct: 19  HGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHK 78

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 79  KSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTE 138

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +++L+ D+  DTV F  NYD S  EP  L    PN+LVNG  GIAVGMAT+IP 
Sbjct: 139 ARLAKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPP 198

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV    A IDN DI +D ++   I GPDFPTGA++   + ++  Y TGRGS++IR
Sbjct: 199 HNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIR 258

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++
Sbjct: 259 AKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRII 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++
Sbjct: 318 IELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVSVIIK 377

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ EL  +           
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNK----------- 426

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                              E Q +AIL++RL RL GL RD I  E+ ++   +     ++
Sbjct: 427 ---------------YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLI 471

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +++     ++K +L  + D+    RRT +++   +++EDE+ I     ++ +S  GY++R
Sbjct: 472 NTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G S      +       +      VLFF++ G VY+ K++ +   S
Sbjct: 532 INPDEFRIQKRGGRGVSVNAEPSDPIDIAT-MGKAKDWVLFFTNSGKVYRTKLYNIRSYS 590

Query: 611 PQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  IN
Sbjct: 591 RTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENIN 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+GK A+ L   D+++SV   T ++ + +  + G+ +R   S +     R   GVR + L
Sbjct: 649 RNGKKAINLRENDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVRALKL 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+    +      +   +                +          ++     + +
Sbjct: 708 EDDDVVVGA--ISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFK 765

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                 +   I+ +S  G   +T   +    +R+  G++A  ++ 
Sbjct: 766 AIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTD 810


>gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
 gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str.
           95010]
          Length = 834

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/825 (35%), Positives = 465/825 (56%), Gaps = 36/825 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + 
Sbjct: 19  HGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHK 78

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 79  KSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTE 138

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +++L+ D+  DTV F  NYD S +EP  L    PN+LVNG  GIAVGMAT+IP 
Sbjct: 139 ARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPP 198

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV    A IDN DI +D ++   I GPDFPTGA++   + ++  Y TGRGS++IR
Sbjct: 199 HNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIR 258

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++
Sbjct: 259 AKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRII 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++
Sbjct: 318 IELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIK 377

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+                 
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAK----------------- 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                    I         E Q +AIL++RL RL GL RD I  E+ ++   +     ++
Sbjct: 421 ---------IQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILI 471

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +++     ++K +L  + D+    RRT +++   +++EDE+ I     ++ +S  GY++R
Sbjct: 472 NTKEEQNNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G S      +       +      VLFF++ G VY+ K++ +   S
Sbjct: 532 INPDEFRIQKRGGRGVSVNAEPSDPIDIAT-MGKAKDWVLFFTNSGKVYRTKLYNIRSYS 590

Query: 611 PQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  IN
Sbjct: 591 RTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENIN 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+GK A+ L   D+++SV   T ++ + +  + G+ +R   S +     R   GV+ + L
Sbjct: 649 RNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVKALKL 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+    +      +   +                +          ++     + +
Sbjct: 708 EDDDVVVGA--ISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFK 765

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                 +   I+ +S  G   +T   +    +R+  G++A  ++ 
Sbjct: 766 AIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTD 810


>gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12]
 gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0]
          Length = 834

 Score =  653 bits (1684), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/825 (35%), Positives = 467/825 (56%), Gaps = 36/825 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I+ + I+ E++  +L YA++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + 
Sbjct: 19  HGKISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHK 78

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG++A+Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE
Sbjct: 79  KSARIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTE 138

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +++L+ D+  DTV F  NYD S +EP  L    PN+LVNG  GIAVGMAT+IP 
Sbjct: 139 ARLAKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPP 198

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV    A IDN DI +D ++   I GPDFPTGA++   + ++  Y TGRGS++IR
Sbjct: 199 HNLKEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSKMREGYKTGRGSVIIR 258

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E+     ++ VVTEIPYQ NKA ++EKIAELV++K I  I D+RDES+ +G R++
Sbjct: 259 AKIDFEENKK-HDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRII 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ DV+L++LY+YT+LQS FS+N++ LN   P    L  I+K +V F+  V+++
Sbjct: 318 IELKKDANPDVVLSKLYKYTALQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQISVIIK 377

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+ +  NK   R H+L  L IA+ N+D+V+ II+ S   E A+ +L  +           
Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNK----------- 426

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                              E Q +AIL++RL RL GL RD I  E+ ++   +     ++
Sbjct: 427 ---------------YNFDEEQNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDVLI 471

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKR 550
           +++     ++K +L  + D+    RRT +++   +++EDE+ I     ++ +S  GY++R
Sbjct: 472 NTKEEQDNVLKNQLNEIADKFGDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRR 531

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    +R Q+RGG+G S      +       +      VLFF++ G VY+ K++ +   S
Sbjct: 532 INPDEFRIQKRGGRGVSVNAEPSDPIDIAT-MGKAKDWVLFFTNSGKVYRTKLYNIRSYS 590

Query: 611 PQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             ARG  ++N L+ L   ++IT I+P   ++  +N  Y+ F T+ G ++R K+S+F  IN
Sbjct: 591 RTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENIN 648

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           R+GK A+ L   D+++SV   T ++ + +  + G+ +R   S +     R   GV+ + L
Sbjct: 649 RNGKKAINLRDNDQLVSVFATTGQDTVFIANESGKVIRIKESVVNP-QSRVGGGVKALKL 707

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+    +      +   +                +          ++     + +
Sbjct: 708 EDDDVVVGA--ISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFK 765

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                 +   I+ +S  G   +T   +    +R+  G++A  ++ 
Sbjct: 766 AIIGARETDLIMIISSDGNLIKTKVSNIPSLSRNASGVKAIRLTD 810


>gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183]
 gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM
           43183]
          Length = 833

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/890 (32%), Positives = 437/890 (49%), Gaps = 116/890 (13%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + E+ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  ++ 
Sbjct: 14  DFEENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRG 73

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP-PAAER 129
           +VKCAR+ GEVMGK HPHG++AIYDA+ RMAQ W++R+ L++G GNFGS+ GD  PAA R
Sbjct: 74  HVKCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMR 133

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  ++D + ++TVDFRPNYDG  +EP VL A +PN+LVNG  GIAVGMATN
Sbjct: 134 YTEARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATN 193

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGEVV     ++++PD  L+ LM+ + GPD PTG +I+G  GI++AYA GRG+  
Sbjct: 194 MAPHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIVGLEGIRDAYAKGRGTFR 253

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
           +R  + IE  +  R+ IVVTE+PY V    ++ KI +LV+ K++  I+DL+D +DR  G 
Sbjct: 254 MRATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGL 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIE+K G + + +L +LYR T ++  F +N VAL   +P    L  +L+ +V  R EV
Sbjct: 314 RLVIEVKNGFNPEAVLAELYRLTPMEETFGINNVALVDGQPRTLGLRELLQVYVDHRLEV 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+++   K ++R H++ GL +A+ N+DEV+ IIR S +   A+R LM+         
Sbjct: 374 VRRRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLME--------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  LSE+Q + IL+  L RLT   R ++  E   LG EI    
Sbjct: 425 -----------------TFELSEIQAQYILDTPLRRLTRFDRLELEKESEQLGKEIARLT 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLG 546
            IL S  +L  ++ +EL  V  +  TPRRT ++E            +  E  +V +S  G
Sbjct: 468 AILESDRKLRKLVAKELGEVAKKFSTPRRTVLLESSGQTAAAVPLEVPDEPCLVLLSSTG 527

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            + R            G   +       D +  +   +T   V   +S G + K +V  L
Sbjct: 528 LLAR--------TAGPGPLPAESGSGPHDVLAAVVRATTRGEVGLVTSAGRMIKVEVLDL 579

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-NLYVVFATKHGNVRRNKLSDF 665
           P   P     +L     +++   +          S       +   T+ G V+R      
Sbjct: 580 PALPPGDGPPSLAGGAPISEYTTLADGERVVGLGSLTGHGPGLALGTEQGVVKRVVPDYP 639

Query: 666 IQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               R     + L   D ++ +VE  + E+D++  T   Q +R+  + +R   GR + G+
Sbjct: 640 AN--REEFEVISLKDGDRVVGAVELASDEHDLVFITSDAQLLRYAAANVRP-QGRAAAGM 696

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            GI L++G +VI    V          I                                
Sbjct: 697 AGIKLSEGARVIWFGTVDPDRESRVVTIAGSSAALPG----------------------- 733

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                              ++ G  K +    F    R+  G+R+    K          
Sbjct: 734 -------------------TQNGAVKVSDYAVFPRKGRATGGVRSHRFLK---------- 764

Query: 845 FPVNDNDQIIL-----------VSDKGTLIRVPVNEIRIAS-RATKGVVI 882
                 + ++L           VS+ G  + +P         R   G  +
Sbjct: 765 -----GEDVLLRAWAGPAPLRAVSEAGKTVELPAE----LGRRDGSGDKL 805



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 8/98 (8%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF-PVNDNDQIILVSDKGTL 862
           +E+G  KR    D+   NR    + +       +   +V      +D   ++ ++    L
Sbjct: 626 TEQGVVKRV-VPDYPA-NREEFEVISLK-----DGDRVVGAVELASDEHDLVFITSDAQL 678

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +R     +R   RA  G+     ++  RV+    +   
Sbjct: 679 LRYAAANVRPQGRAAAGMAGIKLSEGARVIWFGTVDPD 716



 Score = 45.6 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 85/271 (31%), Gaps = 39/271 (14%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            +   +V  +  G + R      +               D + +V   T   ++ L T  
Sbjct: 515 PDEPCLVLLSSTGLLARTAGPGPLPAESGSG------PHDVLAAVVRATTRGEVGLVTSA 568

Query: 703 GQCVRFPISAIRVFA---GRNS-VGVRGI----SLAKGDQVISMAIVLHADADYDERICY 754
           G+ ++  +  +       G  S  G   I    +LA G++V+ +                
Sbjct: 569 GRMIKVEVLDLPALPPGDGPPSLAGGAPISEYTTLADGERVVGL-----GSLTGHGPGLA 623

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +       + +  D           S++         EL   E  ++ ++      R ++
Sbjct: 624 LGTEQGVVKRVVPDYPANREEFEVISLKDGDRVVGAVELASDEHDLVFITSDAQLLRYAA 683

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILV---------SDKGTLI 863
            + R   R+  G+    +S+      ++    V+ + +  ++ +         +  G + 
Sbjct: 684 ANVRPQGRAAAGMAGIKLSEG---ARVIWFGTVDPDRESRVVTIAGSSAALPGTQNGAV- 739

Query: 864 RVPVNE---IRIASRATKGVVIFSTAKDERV 891
              V++        RAT GV      K E V
Sbjct: 740 --KVSDYAVFPRKGRATGGVRSHRFLKGEDV 768


>gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC
           19397]
 gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall]
 gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502]
 gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. ATCC 19397]
 gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A str. Hall]
          Length = 956

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 295/939 (31%), Positives = 466/939 (49%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIE K+ A+ DVI      LY+ T LQS  S NMVAL   KP+   L  +L+ +V 
Sbjct: 308 GIRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKAMLEYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  LM++   
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     ++VQ  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDVQAEAILELMLYKLTGLEIVAFEKEYKELEKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   IL+S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T
Sbjct: 462 INKLKKILNSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEEIIVEEDVVLT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ 
Sbjct: 522 LSNEGFAKRISLKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I       +  +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVRLDEIIKTIDLSETIMEAFSIEDFTAQKD---MLFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + ++  +      +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKGEFLVKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEPVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN +G +   +   D +                 IS                +++   +
Sbjct: 695 -RNIIGYKLFDILPNDSIEKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       ++    EE  ++   +  + ++          ++  I   S
Sbjct: 754 SKILVLFDDEGKAYYIPAFMLQSIKEEGINISAFTGDKISLLNAISTFRFEEDISIYFSS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           EKG  KRT   + +I      G         ++   LV++      +Q  I+++++K  +
Sbjct: 814 EKGLIKRTLLSELKIE-----GNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    I E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 12/218 (5%)

Query: 547 YVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            V       Y++       +G   +    ++         +   ++ F   G  Y    +
Sbjct: 713 KVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKILVLFDDEGKAYYIPAF 772

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L     +    +              +++          ++ + F+++ G ++R  LS+
Sbjct: 773 MLQSIKEEGINISAFT-------GDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSE 825

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 S ++       D+++S+         +IL+ T+    +RF   A+    G+ + 
Sbjct: 826 LKIEGNSTQVYKFKHKEDKLVSILIKEHGEQKNILIITEKAMVIRFKSEAVNPM-GKMAS 884

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           GV GISL   D+VI  +I+   D    +     K    
Sbjct: 885 GVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGT 922


>gi|299822649|ref|ZP_07054535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
 gi|299816178|gb|EFI83416.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Listeria grayi DSM 20601]
          Length = 820

 Score =  652 bits (1682), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/877 (32%), Positives = 468/877 (53%), Gaps = 91/877 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K +
Sbjct: 4   PEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKGF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QD+ +R  LIE  GN GSVDGDPPAA RYT
Sbjct: 64  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDFKVRNSLIEMHGNNGSVDGDPPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP
Sbjct: 124 EARLSKIAAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E+++  +  +D PD  L  +M+I++GPDFPTG +I G  GI+ AY TG+G I++R
Sbjct: 184 PHNLTEIIEAVIKRLDKPDCSLADIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRIIVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + +E   G R+QI + EIPY+VNKA ++++I EL  EKRI  I+++RDE+DR G R+ 
Sbjct: 244 SKTEVEDLRGGRKQITIHEIPYEVNKANLVKRIDELRIEKRIEGISEVRDETDRTGLRIA 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELK+ A+++ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A+++ ++E++ +
Sbjct: 304 VELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNKRPELMGIIAMLDAYISHQKEIITK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y + KA+ R H++ GL  A++ LDEV+++IR S +   A+                 
Sbjct: 364 RSEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAK----------------- 406

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                    +    T   SE Q  AI+ L+L RLT     D+  E   L  +I     IL
Sbjct: 407 ---------LNLQQTYQFSERQAEAIVSLQLYRLTNTDIHDLNKEAAELAAQIDALEKIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
                L+  +K EL  +K    TPR T I   + +  ++ E  +  ED++V+V+  GYVK
Sbjct: 458 GDEGELVKTLKAELTEIKKNYKTPRLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y A +        + M++ D    +  ++T  ++L F+S G      V  LP  
Sbjct: 518 RTSYRSYTASKG-----DELAMKETDHAIFIEKMNTMDALLLFTSHGNFIYRPVHELPDI 572

Query: 610 SPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             +  G  + +I+  +  GE +   +P  +   +     +VF T+ G  + + ++++   
Sbjct: 573 RWKNLGDHVSHIVTEMGSGEEVIQALPLSK---ANETQKLVFLTQAGMTKVSLIANYRPQ 629

Query: 669 NRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             S   +A+KL + D++L+V       DI + T+ G  +R+PI+ I     R + GV+ I
Sbjct: 630 RYSKAMMAIKLKADDKLLNVAVADGSEDIFIATRNGYGLRYPITEIPESGTRTA-GVKAI 688

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D+V+   ++   +                                          
Sbjct: 689 NLKETDEVVGGVLLQSEENR---------------------------------------- 708

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       ILT +++G  K+  + +F   +R+ +G+      K N     + +   
Sbjct: 709 ----------GIILT-TQRGSMKKMKASEFEAISRAKRGLLMLRELKANPH-RFIDIRLA 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           + +D+++++++K   + + V  +R   R + G  I  
Sbjct: 757 DKDDRLMVLTNKEQTVEIQVENLRTTDRYSNGSFILD 793



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 59/473 (12%), Positives = 130/473 (27%), Gaps = 70/473 (14%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           ++L  D++     +     +++Q      +            I   L++     KE +  
Sbjct: 304 VELKKDANSEGVLNYLFKNTDLQISYNFNMVAIHNKRPELMGIIAMLDAYISHQKEIITK 363

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            S         +Q ++    +  +     I       +  D  +        S       
Sbjct: 364 RSEYDIKKAKARQHIIEGLIKALSILDEVIQLIRGSKDKRDAKLNLQQTYQFSERQAEAI 423

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L +YR         +                            G + K     L    
Sbjct: 424 VSLQLYRLTNTDIHDLNKEAAE--------LAAQIDALEKILGDEGELVKTLKAELTEIK 475

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              +         L   E     +   ++    +   +V  TK G V+R     +     
Sbjct: 476 KNYKTP------RLTAIENEIAEIVIDKEVLVASEDVIVSVTKEGYVKRTSYRSYTASKG 529

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                + +   D  + +E     + +LL T  G  +  P+  +             I   
Sbjct: 530 DE---LAMKETDHAIFIEKMNTMDALLLFTSHGNFIYRPVHELPD-----------IRWK 575

Query: 731 K-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD V                                     + +  +      + +  
Sbjct: 576 NLGDHV-------------------------------------SHIVTEMGSGEEVIQAL 598

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 + Q ++ +++ G  K +   ++R   R  K + A  +   ++   L+ V   + 
Sbjct: 599 PLSKANETQKLVFLTQAGMTKVSLIANYRPQ-RYSKAMMAIKLKADDK---LLNVAVADG 654

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++ I + +  G  +R P+ EI  +   T GV   +  + + VV    ++  E 
Sbjct: 655 SEDIFIATRNGYGLRYPITEIPESGTRTAGVKAINLKETDEVVGGVLLQSEEN 707


>gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 592

 Score =  652 bits (1681), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/616 (48%), Positives = 415/616 (67%), Gaps = 27/616 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 303 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 363 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 413

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 414 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  GY+
Sbjct: 457 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 517 KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 576

Query: 609 GSPQARGKALINILSL 624
               A+G  +IN+L +
Sbjct: 577 YGRTAKGIPIINLLGI 592



 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 89/217 (41%), Gaps = 19/217 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 385 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 435

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 436 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 495

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 496 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 552

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            +D ++  ++ G + R    E+    R  KG+ I + 
Sbjct: 553 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINL 589


>gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
 gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu
           4113]
          Length = 817

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/845 (34%), Positives = 425/845 (50%), Gaps = 93/845 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +M
Sbjct: 6   TKTPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+   + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+   
Sbjct: 66  GLRPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A+  + + + ++TVDF PNYDGS QEPV L A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I +P  DLD LM  + GPD PTG  I+G +G+++AY 
Sbjct: 186 AVGMATNMPPHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIVGMSGVRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 TGRGTFKIRATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDREHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+R L+QR 
Sbjct: 366 LDHRFNVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQR- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FGLSEVQTQYILDTPLRRLTKFDRLELESERDRLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI+E   IL S + L  ++  EL +V  +  TPRRT ++E          +    +   
Sbjct: 460 TEIEELTRILDSDAELRKLVSGELAAVAKKFGTPRRTVLLESSNAPVTAVPLEVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R       A                D +      +   SV   +S G + 
Sbjct: 520 VLLSSTGLLART------ADGEPFPVEGKAKRAKHDVILSAVPATARGSVGAVTSTGRLL 573

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP+    A          +   LSL +GE +  +    E     ++  +   T+
Sbjct: 574 RLTVIDLPMLPESAGPPNLAGGAPIAEFLSLEEGEELICLTTLDE-----SSPGLAIGTE 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +     + L   D I+ +VE  T E D++  T   Q +R+  S 
Sbjct: 629 QGVVKRVVPDYPAN--KDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYAASQ 686

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ G+ LA G +VIS   V  A       I             S      
Sbjct: 687 VRP-QGRAAGGMAGVKLASGAKVISFTAVDPASDAVVFTIAGSSGTLDDSVQQS------ 739

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                                K T    +    R+  G+R    
Sbjct: 740 ------------------------------------AKLTPFDQYPRKGRATGGVRCHRF 763

Query: 833 SKINE 837
            K  +
Sbjct: 764 LKGED 768



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 22/213 (10%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM-------AIVLHADADYDE 750
           L +  G   R          G+          AK D ++S        ++          
Sbjct: 521 LLSSTGLLARTADGEPFPVEGKAKR-------AKHDVILSAVPATARGSVGAVTSTGRLL 573

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  +            +      +    S+E          L      +   +E+G  K
Sbjct: 574 RLTVIDLPMLPESAGPPNLAGGAPIAEFLSLEEGEELICLTTLDESSPGLAIGTEQGVVK 633

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNE 869
           R    D+   N+    +         E   +V    +    + ++ ++D   L+R   ++
Sbjct: 634 RV-VPDYPA-NKDELEVIGLK-----EGDRIVGAVELRTGEEDLVFITDDAQLLRYAASQ 686

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +R   RA  G+     A   +V+S   +  +  
Sbjct: 687 VRPQGRAAGGMAGVKLASGAKVISFTAVDPASD 719



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 88/272 (32%), Gaps = 31/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +   +    K A      D ILS    T    +   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTADGEPFPVEGKAKRA----KHDVILSAVPATARGSVGAVTSTG 570

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGI----SLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  + +           G   I    SL +G+++I +  +  +          +
Sbjct: 571 RLLRLTVIDLPMLPESAGPPNLAGGAPIAEFLSLEEGEELICLTTLDES-----SPGLAI 625

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D            ++         EL+  E+ ++ +++     R ++ 
Sbjct: 626 GTEQGVVKRVVPDYPANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYAAS 685

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R+  G+    ++       +++   V+     ++ +     GTL          
Sbjct: 686 QVRPQGRAAGGMAGVKLA---SGAKVISFTAVDPASDAVVFTIAGSSGTLDDSVQQSAKL 742

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E ++ +  
Sbjct: 743 TPFDQYPRKGRATGGVRCHRFLKGEDILVLAW 774


>gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
 gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672]
          Length = 817

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/857 (33%), Positives = 423/857 (49%), Gaps = 94/857 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+ +A   + + + +DTVDF PNYDG  +EPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVV     +I  P+ DLDALM+ + GPD PTG  I+G +G+++A
Sbjct: 185 GIAVGMATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGVRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  IR    +E+ +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YRTGRGTFKIRATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFDVVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++  E + 
Sbjct: 425 R--------------------------FSLSDVQTQYILDTPLRRLTKYDRIELETERDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI+E   IL S + L  ++  EL +V  +    RRT ++E          +  ED  
Sbjct: 459 LNAEIEELTRILDSDAELRKLVSGELAAVAKKFGNDRRTLLLESADVPAAPVPLQVEDAP 518

Query: 540 V--TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               +S  G + R               +        D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLAR-------TANDEPFAQDAAKRVKHDVIVSAVPTTARGEVGVVTSAGR 571

Query: 598 VYKEKVWR---LPIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V     LP   P         L   +SL   E +  +    E     ++  +   
Sbjct: 572 LLRLNVVDLPVLPEAMPTPNLSGGAPLAEFVSLEDDEEVVCLTTLDE-----SSPGLALG 626

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R          +     + L   D I+   E  T E D++  T   Q +R+  
Sbjct: 627 TEQGVVKRVVPDYPSN--KEELEVITLKEGDRIVGAIELRTGEEDLVFVTDDAQLLRYQA 684

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +R   GR + GV G+ LA+G +VI+   V  A       +   +         +    
Sbjct: 685 GQVRP-QGRPAGGVAGVKLAQGAKVIAFTAVDPAADAMVFTVAGSRGTLDDSVQTT---- 739

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K T    F    R+  G+R  
Sbjct: 740 --------------------------------------AKLTPFDQFPRKGRATGGVRCQ 761

Query: 831 DVSKINEIGALVAVFPV 847
              K  +  AL  V PV
Sbjct: 762 RFLKGEDCLALAWVGPV 778



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 15/178 (8%)

Query: 731 KGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           K D ++S         + +   A    R+  +        + + +      L    S+E 
Sbjct: 547 KHDVIVSAVPTTARGEVGVVTSAGRLLRLNVVDLPVLPEAMPTPNLSGGAPLAEFVSLED 606

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +        L      +   +E+G  KR    D+  SN+    +         E   +V 
Sbjct: 607 DEEVVCLTTLDESSPGLALGTEQGVVKRV-VPDYP-SNKEELEVITLK-----EGDRIVG 659

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ V+D   L+R    ++R   R   GV     A+  +V++   +  +
Sbjct: 660 AIELRTGEEDLVFVTDDAQLLRYQAGQVRPQGRPAGGVAGVKLAQGAKVIAFTAVDPA 717



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 89/268 (33%), Gaps = 32/268 (11%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  +  G + R    +    +     A K    D I+S    T   ++ + T  G+ +R 
Sbjct: 521 VLLSSTGLLARTANDEPFAQD-----AAKRVKHDVIVSAVPTTARGEVGVVTSAGRLLRL 575

Query: 709 PISAIRV----FAGRNSVGVRG----ISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            +  + V        N  G       +SL   ++V+ +  +  +          +     
Sbjct: 576 NVVDLPVLPEAMPTPNLSGGAPLAEFVSLEDDEEVVCLTTLDES-----SPGLALGTEQG 630

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
             + +  D           +++         EL+  E+ ++ V++     R  +   R  
Sbjct: 631 VVKRVVPDYPSNKEELEVITLKEGDRIVGAIELRTGEEDLVFVTDDAQLLRYQAGQVRPQ 690

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IRVPVNE 869
            R   G+    +++      ++A   V+     ++ +    +GTL           P ++
Sbjct: 691 GRPAGGVAGVKLAQG---AKVIAFTAVDPAADAMVFTVAGSRGTLDDSVQTTAKLTPFDQ 747

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERI 897
                RAT GV      K E  +++  +
Sbjct: 748 FPRKGRATGGVRCQRFLKGEDCLALAWV 775


>gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
 gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA]
          Length = 968

 Score =  651 bits (1680), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/959 (31%), Positives = 469/959 (48%), Gaps = 94/959 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +  +D   +  I  V + + M ++YL YAI V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MAKKV--NDIPRDNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+    ++ Y K ARI G+++GKYHPHG+ ++YDA+  MAQ++S R  LI+G GN+GS+
Sbjct: 59  YQLKAFPDRPYYKSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSM 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  +L D+ K+TVD  PNY  S  EP VL +RYPN+LVNG  
Sbjct: 119 DGDGAAAMRYTEARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNLGEV DG +A IDN +I    LM  ++GPD PTG +++G+  I  A
Sbjct: 179 GIAVGLATNIPPHNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILIGQNSILAA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  ++IE+    R  IV+TE P++ NKA +L+ I+E+  +KR       I
Sbjct: 239 YETGEGKVTLRAKTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESI 298

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
            D+RDESDR G R VIEL+       AD +L  L++ T LQ   S NMVAL   KP+   
Sbjct: 299 VDIRDESDRSGVRAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGKPQTMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  I+K +V  ++E+V RRT   L+ A  R H++ G   A+  LDE+++ IR S + + A
Sbjct: 359 LKTIIKHYVNHQKEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              L+ +                             +E+Q  AILEL L RLTGL     
Sbjct: 419 GVNLISK--------------------------FGFTEIQAEAILELMLYRLTGLEIKVF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDED 531
           + E   L   IK+   ILS    LL ++K EL  V D+   PR+T I   +    ++ E+
Sbjct: 453 QKEYAELEKTIKKLKKILSEEKELLKVVKNELKEVSDKYRNPRKTSIIKDDNEAKIDVEE 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+++T+S  G++KR+PL  +       +    +  R+ D +  LF  +T  S+L 
Sbjct: 513 LIVVEDVMITLSKDGFIKRIPLKTFNRLNAKAED---IEYREGDELKFLFKSNTTESILL 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +Y+ K   +P G  + +G+ + NI+     E    I       S   + Y+ F 
Sbjct: 570 FTNKGNMYQTKGINIPEGKWKEKGEKVDNIIKTLNLEEENIIFATSV-TSFIPSKYIQFI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRF 708
           T  G ++R+ L  F     +   A+KL   +E++ V    QE     I   TK G     
Sbjct: 629 TSRGGIKRSSLDKFQTS-YTKLQAIKLKELEEVIDVILLNQEEVKEFISFETKEGLSFSL 687

Query: 709 PISAIRVFA---------------------------------GRNSVG-VRGIS-LAKGD 733
            I  I                                     G  S G ++G + + K D
Sbjct: 688 QIPKIEDLPRNILPTIMFNLSNKDEIIKVEYSETMEFVNFSIGITSKGTIKGFNSIKKND 747

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            +      L     +  +    K  +     +S     +  + ++   +  + +    + 
Sbjct: 748 NLKVSTDSLSNVLMFTNKGKVFKIPAFLLSGVSKGELPLDKIVDNIEKDEKVIKVFSLKT 807

Query: 794 KLKEQFILTVSEKGFGKRTSSYD----FRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             + +FI   + +G  K+T+  +    +                  N    L++V   +D
Sbjct: 808 FEENKFIYFFTRRGMIKKTALTEFDGNYSTQ-------ITYKFKYDN--DELISVELYDD 858

Query: 850 ND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
              ++++++ K   I+     +    +   GV   S  +++ V+    I      +  E
Sbjct: 859 CQVEMLIITKKAMGIKFSSENVNTMGKVASGVTGISLKENDEVIYGSLIGSQSRDNTNE 917



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 46/263 (17%)

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
               + ++VL F++ G V+K   + L   S        I    ++  E+   ++     +
Sbjct: 751 VSTDSLSNVLMFTNKGKVFKIPAFLLSGVSKGELPLDKI----VDNIEKDEKVIKVFSLK 806

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLT 699
           +   N ++ F T+ G +++  L++F     +          DE++SVE       ++L+ 
Sbjct: 807 TFEENKFIYFFTRRGMIKKTALTEFDGNYSTQITYKFKYDNDELISVELYDDCQVEMLII 866

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           TK    ++F    +    G+ + GV GISL + D+VI  +++     D    I       
Sbjct: 867 TKKAMGIKFSSENVNTM-GKVASGVTGISLKENDEVIYGSLIGSQSRDNTNEIALTSTDK 925

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                   I  +S+    K     D ++
Sbjct: 926 ----------------------------------------ITLISKNKEKKEVELEDIKL 945

Query: 820 SNRSGKGIRATDVSKINEIGALV 842
            NR+GKG     +S  +EI  ++
Sbjct: 946 QNRAGKGSSIMTISLEDEIKEII 968


>gi|257898811|ref|ZP_05678464.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
 gi|257836723|gb|EEV61797.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com15]
          Length = 817

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/892 (32%), Positives = 474/892 (53%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++++  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIVNGLLVLADGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +IIL++ KG  I +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEIILMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801]
 gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801]
          Length = 835

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/905 (32%), Positives = 455/905 (50%), Gaps = 108/905 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  QIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   A   +L D+ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP H
Sbjct: 132 LASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG VA+ID+P++  + L ++I GPDFPTG  I+ + GI+ AYATGRG I +RG+
Sbjct: 192 NLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEIITQEGIREAYATGRGIIPVRGI 251

Query: 254 SHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + IE           R  IVVTE+PYQVNKAA +EK+A+LV + R+  IAD+RDESDR G
Sbjct: 252 TRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIRDESDRTG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A A+ +L  LY+ T+LQS F   ++AL   KP + +L  +L+ F+ FRE+
Sbjct: 312 MRVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNKPCQLSLRRLLEEFLRFREQ 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  + L +A+ R H+L GL IA+ NLD ++ I+R + +  TA+             
Sbjct: 372 TLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRF---------- 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + +S+ Q  AIL + + RLTGL R  +++E + L   I+E 
Sbjct: 422 ----------------QAELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEEL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHL 545
             +LS R  LL  +K++L S+K +   PRRTRIV+     +        +E+   T+S  
Sbjct: 466 QTLLSDRHELLKTLKKDLRSLKRKFGDPRRTRIVQPPKTPKSSSTPNVKKEEPPTTLSPK 525

Query: 546 GYV---KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD---------LFIVSTHTSV--LF 591
                 K   L+++  Q         +  + E              +F          + 
Sbjct: 526 TEESPRKTPSLTLFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMV 585

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +  G  Y   V  +P      +   L+++L          ++      +  +   ++  
Sbjct: 586 ITDAGKAYPVAVAEIP--PLTLQAIPLLSLLPKGAQRDANRVIDAGFVPNDPHGYDLLLL 643

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI- 710
           T+ G ++R K+S+   +   G + +KL   D +  V    +  ++ +    G+ +R+P+ 
Sbjct: 644 TQQGRIKRVKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRILRYPVT 703

Query: 711 SAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             +    GR++ G + + L   G+ V++   +                            
Sbjct: 704 DEVIPLMGRSAQGNQALKLRNVGETVVNCLTLHSQGEVLLISSLGYGKR----------- 752

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                          L+++E   GK               G + 
Sbjct: 753 -------------------------------LSLTELRLGKL-----------GDLGTQC 770

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++  +   L  +    +N Q+  ++++   + + V  I    +   G  +     +E
Sbjct: 771 LQFTQ--KTDKLAGMIAAKENGQVRCLTNQNRSLAISVETILPWGKDGPGDRLVKLQPEE 828

Query: 890 RVVSV 894
            + +V
Sbjct: 829 VITTV 833


>gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 956

 Score =  651 bits (1679), Expect = 0.0,   Method: Composition-based stats.
 Identities = 293/939 (31%), Positives = 465/939 (49%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I S  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQD++ R+ LI+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKKSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIE K+ A+ DVI      LY+ T LQS  S NMVAL   KP+   L  +L+ +V 
Sbjct: 308 GIRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGKPKTLGLKAMLEYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EV+ RRTK  L  A  R H++ G   A+  +DE+++ IR S + + AR  LMQ+   
Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMQK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +++Q  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDIQAEAILELMLYKLTGLEIVAFEKEYKELERL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   IL+S   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+V+T
Sbjct: 462 INKLKKILNSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEEIIVEEDVVLT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+  + KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ 
Sbjct: 522 LSNESFAKRISLKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I       +  +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIEDFIAQKD---MLFITDSGYIKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  + +KL   + ++  +      +E  + + T  G        +++   
Sbjct: 636 TLDKF-NTNYTKIMVLKLKKGESLVKADLVDRTREEKFLNIKTHKGLSFNVEEPSLQPVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN +G +   +   D +                 IS                +++   +
Sbjct: 695 -RNIIGYKLFDILPNDSIKKVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       ++ G  E   ++   +  + ++          ++  I   S
Sbjct: 754 SKTLVLFDDEGKAYYIPAFMLQGIKEGGINISVFTGDKISLLNAISTFRFEEDISIYFSS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           EKG  KRT   + +I      G         ++   LV++      +Q  I+++++K  +
Sbjct: 814 EKGLIKRTLLSELKIE-----GNSTQVYKFKHKEDKLVSILIKEHEEQKDILIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    I E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILASIIDEND 907



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 547 YVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            V       Y++       +G   +    ++         +  +++ F   G  Y    +
Sbjct: 713 KVDFCDNYEYKSFYVNISKEGLITISDLKDNKSHISLFTDSSKTLVLFDDEGKAYYIPAF 772

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            L          ++             +++          ++ + F+++ G ++R  LS+
Sbjct: 773 MLQGIKEGGINISVFT-------GDKISLLNAISTFRFEEDISIYFSSEKGLIKRTLLSE 825

Query: 665 FIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 S ++       D+++S+      ++ DIL+ T+    +RF   A+    G+ + 
Sbjct: 826 LKIEGNSTQVYKFKHKEDKLVSILIKEHEEQKDILIITEKAMVIRFKSEAVNPM-GKMAS 884

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           GV GISL   D+VI  +I+   D    +     K    
Sbjct: 885 GVTGISLKDLDKVILASIIDENDTRKIKIKTKAKDKGT 922


>gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
 gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus
           M045]
          Length = 817

 Score =  651 bits (1678), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/841 (33%), Positives = 416/841 (49%), Gaps = 82/841 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+ +A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I  P+ DLDALM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YA+GRG+  IR    I+  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YASGRGTFKIRATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T+++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDREHGLRLVIEIKNGFVPEAVLEQLYKLTAMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A+  L++
Sbjct: 365 VYLDHRFDVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIE 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+VQT+ IL+  L RLT   R ++ +E   
Sbjct: 425 R--------------------------FALSDVQTQYILDTPLRRLTKFDRIELESEKER 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-VREDM 538
           L  EI E   IL S + L  ++  EL +V  +  T RRT ++E              +  
Sbjct: 459 LNAEIAELTRILDSDAELRKLVSAELAAVSKKFGTDRRTVLLESSGAPAAVPLQVADDPC 518

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G + R   +   A    G+          D +      +    V   +S G +
Sbjct: 519 RVLLSSTGLLARTADANPFADDGKGRRV------KHDLIVSAVPATARGEVGVVTSAGRL 572

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHGNV 657
            +  V  LP    Q     L     L +   +              ++  +   T+ G V
Sbjct: 573 LRVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDADETVVCLTTLDESSPGLALGTEQGVV 632

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R          +     + L   D I+      T E D++  T   Q +R+  S +R  
Sbjct: 633 KRVVPDYPSN--KEELEVITLKEGDRIVGAAELRTGEEDLVFITDDAQLLRYQASQVRP- 689

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + GV GI L +G +VIS   V  A       +   +         +          
Sbjct: 690 QGRPAGGVAGIKLTQGAKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTT---------- 739

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                            K T    +    R+  G+R     K  
Sbjct: 740 --------------------------------AKATPFDQYPRKGRATGGVRCQRFLKGE 767

Query: 837 E 837
           +
Sbjct: 768 D 768



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 731 KGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           K D ++S         + +   A    R+  +       +  + +      L    S++ 
Sbjct: 547 KHDLIVSAVPATARGEVGVVTSAGRLLRVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDA 606

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           + +      L      +   +E+G  KR    D+  SN+    +         E   +V 
Sbjct: 607 DETVVCLTTLDESSPGLALGTEQGVVKRV-VPDYP-SNKEELEVITLK-----EGDRIVG 659

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ ++D   L+R   +++R   R   GV      +  +V+S   +  +
Sbjct: 660 AAELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLTQGAKVISFTAVDPA 717



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 31/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++    +  G+        D I+S    T   ++ + T  G
Sbjct: 515 DDPCRVLLSSTGLLARTADANPFADDGKGRRV----KHDLIVSAVPATARGEVGVVTSAG 570

Query: 704 QCVRFPISAIRVFAGRNSVGV--------RGISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +     +               +SL   + V+ +  +  +          +
Sbjct: 571 RLLRVNVVDLPQLPEQTGTPNLSGGAPLAEFVSLDADETVVCLTTLDES-----SPGLAL 625

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  E+ ++ +++     R  + 
Sbjct: 626 GTEQGVVKRVVPDYPSNKEELEVITLKEGDRIVGAAELRTGEEDLVFITDDAQLLRYQAS 685

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    +++      +++   V+     ++ +    +GTL          
Sbjct: 686 QVRPQGRPAGGVAGIKLTQG---AKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKA 742

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E  +S   
Sbjct: 743 TPFDQYPRKGRATGGVRCQRFLKGEDCLSFAW 774


>gi|327440232|dbj|BAK16597.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046]
          Length = 809

 Score =  650 bits (1677), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 470/892 (52%), Gaps = 91/892 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +    + + + M + +  Y+  +I  RA+PD RDGLKPV RRI++ M   G  ++K + K
Sbjct: 5   EKFQDLPLEEVMGDRFGRYSKYIIQDRALPDTRDGLKPVQRRIMYAMFHEGNTFDKPFRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG+ ++YDA+ RM+QDW  R +L+E  GN GSVDGDPPAA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKSRHMLVEMHGNNGSVDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL D+ K+TV+F PN+D    EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSAIAAELLRDINKNTVEFVPNFDDQDMEPTVLPSRFPNLLVNGATGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E +D  +  +DN    +D LM +I+GPDFPTG +I G  GIK AY TG+G I++R  
Sbjct: 185 NLQEALDAVLMRLDNKSCTVDELMTVIKGPDFPTGGIIQGVDGIKKAYETGKGKIIVRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL-VREKRIVDIADLRDESDRQGYRVVI 312
           + IE+  G++EQI++TEIP++VNKA M+ K+ EL V ++R+  I+++RDESDR G R+V+
Sbjct: 245 TEIEQLKGNKEQIIITEIPFEVNKANMIRKMDELRVNDRRLDGISEIRDESDRNGLRIVV 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A  ILN L + T LQ  ++ NM+A++  +P   TL  +L A++  ++E+V RR
Sbjct: 305 ELKKDVPAQGILNFLLKSTDLQVSYNFNMIAIHNRRPMMMTLPLMLDAYIDHQKEIVRRR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y L +A DR H++ GL  A++ LDEV+  IR S +   A+  ++++            
Sbjct: 365 SQYDLTRAEDRLHIVEGLMKALSILDEVIETIRASKDKRDAKNNIIEK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT      ++ E + L   + +   IL 
Sbjct: 413 --------------FGFSEEQAEAIVSLQLYRLTNTDITQLQKEQDELHELVVKLKAILE 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKR 550
              +L+ +IK EL  +K     PR + I   + ++    +  +  E++VVTV+  GYVKR
Sbjct: 459 DEKKLIRVIKSELNDIKKRFTLPRLSTIEAEIEEIKVTRDVLVPSEEVVVTVTKDGYVKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  + A            M+D D++     ++T   +L F++ G    + V  LP   
Sbjct: 519 TSLRSHSASNGKD-----FAMKDSDYLLYEANLNTQHHLLLFTNKGHYIYQPVHELPDIR 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ + +I+ ++  E I  ++     E    N+YV  ATK G ++R+ L+D+I    
Sbjct: 574 WKDLGQHISSIVPIDSNEEIIEVIGIETFE--QPNMYVFTATKEGQIKRSALADYIVTRY 631

Query: 671 SGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S  I  M L   DE++     T + ++LL+T     +RFP+  +    G  + GV+GI +
Sbjct: 632 SKPIKTMNLKGEDEMIFARLVTDKEEVLLSTNTSYTIRFPMEDL-PVTGVKTAGVKGIIV 690

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +G+ + ++A++                                                
Sbjct: 691 KEGEYLAAVALLKP---------------------------------------------- 704

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 +EQ ++ V+++G  KR    +  + NR+ +G+      K N    +  +  VN 
Sbjct: 705 -----DQEQELVIVTQRGAVKRMLLSELELGNRAKRGVVILKELKSNPH-RIFTILVVNF 758

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +   + ++KG    + V  +  A R + G +   T + +  +S   + ++E
Sbjct: 759 RNTFTIETEKGVQETISVTSLTRADRYSNGSLRIDT-EGDGAISRAYVEKTE 809



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 91/271 (33%), Gaps = 54/271 (19%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    D    +   VV  TK G V+R  L      N        +   D +L       +
Sbjct: 493 IKVTRDVLVPSEEVVVTVTKDGYVKRTSLRSHSASNGKDF---AMKDSDYLLYEANLNTQ 549

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +LL T  G  +  P+  +               +   D                    
Sbjct: 550 HHLLLFTNKGHYIYQPVHELP-------------DIRWKD-------------------- 576

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                           + I+S+    S E  I     +  +    ++ T +++G  KR++
Sbjct: 577 --------------LGQHISSIVPIDSNEEIIEVIGIETFEQPNMYVFTATKEGQIKRSA 622

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             D+ ++ R  K I+  ++        ++    V D ++++L ++    IR P+ ++ + 
Sbjct: 623 LADYIVT-RYSKPIKTMNLK---GEDEMIFARLVTDKEEVLLSTNTSYTIRFPMEDLPVT 678

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              T GV      + E + +V  ++  +  +
Sbjct: 679 GVKTAGVKGIIVKEGEYLAAVALLKPDQEQE 709


>gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
 gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX]
          Length = 831

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/882 (32%), Positives = 423/882 (47%), Gaps = 105/882 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        EE  + I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 4   MARTTSPPPEELTEKIIDVDVSEEMRGSFLEYAYSVIYQRALPDARDGLKPVQRRILYQM 63

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VKCAR+ GEVMGK HPHG++AIYDAL R++Q +++R+ L++G GNFGS+
Sbjct: 64  SEMGLRPDRGHVKCARVVGEVMGKLHPHGDSAIYDALVRLSQPFAMRVPLVDGHGNFGSL 123

Query: 121 DGDP-PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            GD  PAA RYTE RL +AA  +++ + ++ VDFRPNYDG   EP VL A +PN+LVNG 
Sbjct: 124 GGDDAPAAMRYTEARLTRAAMLMVESIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGA 183

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNLGEV+     ++ +PD  L+ LME I GPD PTG  I G  GI++
Sbjct: 184 SGIAVGMATNMAPHNLGEVIAAARHLLAHPDATLEELMEFIPGPDLPTGGTITGLDGIRD 243

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRG+  IR    IEK +  R  +VVTE+PY V    ++ +I ELV+ K++  I+DL
Sbjct: 244 AYTKGRGTFRIRATVSIEKLTPRRTGLVVTELPYNVGPEKVISRIKELVQAKKLQGISDL 303

Query: 300 RDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D +D  QG R+VIELK G + + +L +LYR T ++  F +N VAL   +P    L  +L
Sbjct: 304 KDLTDRNQGLRLVIELKNGFNPEAVLEELYRLTPMEETFGINNVALVDGEPRTLGLRDLL 363

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R EVV RR ++   K  +R H++ GL +A+A++D+V+ +IR S +   AR+ LM
Sbjct: 364 QVYVDHRLEVVRRRCEHRRAKREERLHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLM 423

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  LS+ Q R IL+  L RLT   + ++  E +
Sbjct: 424 --------------------------DTFDLSDTQARYILDTPLRRLTRYDKQELEQERD 457

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VR 535
           +L  EI E   IL S  +L  ++ +EL +V  E  TPRRT + E   ++           
Sbjct: 458 TLTAEIAELTAILESDKKLRRLVSKELAAVAKEFATPRRTVLRESTGEVRTSAMPLEVGD 517

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +   V +S  G + R          +             D +      +    V   + L
Sbjct: 518 DPCHVLLSTSGLIGR-------TSGQQLPPMFEGPRTRNDAMASNVRATVRGEVGLVTDL 570

Query: 596 GFVYKEKVWRLPIGS-PQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATK 653
           G V +  V  LP          A+ + + + +   +          S  ++   +V  T+
Sbjct: 571 GRVIRVPVLELPELPDKADENPAISSGVPVTEFVELDADERVIALTSLDSDGPGLVVGTR 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISA 712
            G V+R       Q +    IA  L   D ++      T E D++  T   Q +RF  + 
Sbjct: 631 SGIVKRVGGDYPQQKDDFEIIA--LRPGDRLVGATPLVTGEEDLVFITSNAQLLRFSATT 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV GI LA+G   +    VL  +      +                    
Sbjct: 689 VRP-QGRGAGGVTGIRLAEGAHAVWFGAVLSPEDAVVVTVAGSSTGPD------------ 735

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                          S+ G  K T    F    R+  G+R    
Sbjct: 736 -------------------------------SQPGTAKVTPFTAFPAKGRATGGVRCQRF 764

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            K                + I+L    G + R P    R   
Sbjct: 765 LK---------------GEDILLF---GWVGRSPARAFREDG 788



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 60/238 (25%), Gaps = 33/238 (13%)

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF----AGRN---SVGVRGI 727
           AM L+  D+   V            +  G   R     +         RN   +  VR  
Sbjct: 510 AMPLEVGDDPCHVLL----------STSGLIGRTSGQQLPPMFEGPRTRNDAMASNVRA- 558

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                  V     ++                   +   +        +     ++ +   
Sbjct: 559 ------TVRGEVGLVTDLGRVIRVPVLELPELPDKADENPAISSGVPVTEFVELDADERV 612

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP- 846
                L      ++  +  G  KR    D+             ++  +     LV   P 
Sbjct: 613 IALTSLDSDGPGLVVGTRSGIVKRV-GGDYPQQK------DDFEIIALRPGDRLVGATPL 665

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV-SVERIRESEIV 903
           V   + ++ ++    L+R     +R   R   GV     A+    V     +   + V
Sbjct: 666 VTGEEDLVFITSNAQLLRFSATTVRPQGRGAGGVTGIRLAEGAHAVWFGAVLSPEDAV 723



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 84/267 (31%), Gaps = 32/267 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R        +    +        D + S    T   ++ L T LG
Sbjct: 517 DDPCHVLLSTSGLIGRTSGQQLPPMFEGPRT-----RNDAMASNVRATVRGEVGLVTDLG 571

Query: 704 QCVRFPISAIRVFAGRN------SVGV---RGISLAKGDQVISMAIVLHADADYDERICY 754
           + +R P+  +     +       S GV     + L   ++VI++  +     D D     
Sbjct: 572 RVIRVPVLELPELPDKADENPAISSGVPVTEFVELDADERVIALTSL-----DSDGPGLV 626

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +   S   + + GD  +        ++           L   E+ ++ ++      R S+
Sbjct: 627 VGTRSGIVKRVGGDYPQQKDDFEIIALRPGDRLVGATPLVTGEEDLVFITSNAQLLRFSA 686

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS----------DKGTLIR 864
              R   R   G+    +++       V    V   +  ++V+            GT   
Sbjct: 687 TTVRPQGRGAGGVTGIRLAEGAHA---VWFGAVLSPEDAVVVTVAGSSTGPDSQPGTAKV 743

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERV 891
            P        RAT GV      K E +
Sbjct: 744 TPFTAFPAKGRATGGVRCQRFLKGEDI 770


>gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG]
 gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG]
          Length = 820

 Score =  650 bits (1676), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +IDNP+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSVRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680]
 gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis
           MA-4680]
          Length = 818

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/851 (33%), Positives = 417/851 (49%), Gaps = 84/851 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +M
Sbjct: 6   TKTPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL R+AQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I  P  DL+ LM+ + GPD PTG  I+G TGI++AY 
Sbjct: 186 AVGMATNMPPHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGGRIVGLTGIRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 SGRGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++R 
Sbjct: 366 LDHRFEVVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FSLSEVQTQYILDTPLRRLTRFDRIELESERDRLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI E   IL S + L  ++  EL +V  +  T RRT ++E          +    +   
Sbjct: 460 GEIDELTGILESDAELRKLVSGELAAVAKKFGTDRRTVLLESAGSTAATVPLQVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R            G+   G   + +  V      +    V   +S G + 
Sbjct: 520 VLLSSTGLLARTA-----NGAPFGEDADGRRTKHDVIV-SAVPATARGEVGAVTSSGRLL 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +  V  LP          L     +++                   ++  +   T+ G V
Sbjct: 574 RLNVIDLPRLPETTSAPNLSGGAPISEFLSSLEGDETVVCLTTLDESSPGLALGTEQGVV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R          +     + L   D I+   E  T E D++  T   Q +R+  S +R  
Sbjct: 634 KRVVPDYPSN--KGELEVITLKDGDRIVGAIELSTGEEDLVFITDDAQLLRYQASQVRP- 690

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G+ GI L  G +VIS   V  A       +   +         +          
Sbjct: 691 QGRAAGGMAGIKLTDGAKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTT---------- 740

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                            K T    +    R+  G+R     K  
Sbjct: 741 --------------------------------AKLTPFDQYPRKGRATGGVRCQRFLKGE 768

Query: 837 EIGALVAVFPV 847
           +  ++    PV
Sbjct: 769 DCLSIAWAGPV 779



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 8/145 (5%)

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
               +       +      +  SS+EG+ +      L      +   +E+G  KR    D
Sbjct: 581 PRLPETTSAPNLSGGAPISEFLSSLEGDETVVCLTTLDESSPGLALGTEQGVVKRV-VPD 639

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASR 875
           +  SN+    +         +   +V    +    + ++ ++D   L+R   +++R   R
Sbjct: 640 YP-SNKGELEVITLK-----DGDRIVGAIELSTGEEDLVFITDDAQLLRYQASQVRPQGR 693

Query: 876 ATKGVVIFSTAKDERVVSVERIRES 900
           A  G+         +V+S   +  +
Sbjct: 694 AAGGMAGIKLTDGAKVISFTAVDPA 718



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 81/273 (29%), Gaps = 32/273 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R         +  G+        D I+S    T   ++   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANGAPFGEDADGRRT----KHDVIVSAVPATARGEVGAVTSSG 570

Query: 704 QCVRFPISAIRVFAGRNSV----GVRGIS-----LAKGDQVISMAIVLHADADYDERICY 754
           + +R  +  +       S     G   IS     L   + V+ +  +  +          
Sbjct: 571 RLLRLNVIDLPRLPETTSAPNLSGGAPISEFLSSLEGDETVVCLTTLDESSPGLALGTEQ 630

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                      S   E       D             EL   E+ ++ +++     R  +
Sbjct: 631 GVVKRVVPDYPSNKGELEVITLKDGDRIVGAI-----ELSTGEEDLVFITDDAQLLRYQA 685

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------I 863
              R   R+  G+    ++       +++   V+     ++ +    +GTL         
Sbjct: 686 SQVRPQGRAAGGMAGIKLTDG---AKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAK 742

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             P ++     RAT GV      K E  +S+  
Sbjct: 743 LTPFDQYPRKGRATGGVRCQRFLKGEDCLSIAW 775


>gi|227551203|ref|ZP_03981252.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|293377174|ref|ZP_06623382.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
 gi|227179671|gb|EEI60643.1| DNA topoisomerase IV subunit A [Enterococcus faecium TX1330]
 gi|292644194|gb|EFF62296.1| DNA topoisomerase IV, A subunit [Enterococcus faecium PC4.1]
          Length = 816

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + +    ++ +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++++  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIVNGLLVLADGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  I +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
 gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980]
          Length = 816

 Score =  649 bits (1675), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 473/892 (53%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++++  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIVNGLLVLADGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  I +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
 gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22]
          Length = 818

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/842 (32%), Positives = 417/842 (49%), Gaps = 83/842 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDDAFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+++IYDAL R+AQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+  A   + + + ++TVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I  P+ DLD LM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG+  IR    ++  +  R+ ++VTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YATGRGTFKIRATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A+  L++
Sbjct: 365 VYLDHRFEVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIE 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++QT+ IL+  L RLT   R ++ +E   
Sbjct: 425 R--------------------------FALSDIQTQYILDTPLRRLTRFDRIELESEKEK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI E   IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LNTEIAELTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESSGTQVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R   +        G+          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTASAEPFTADEDGRRT------KHDVIVSAVPATARGEVGAVTSTGR 572

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGN 656
           + +  V  LP     +    L     L +   +              ++  +   T+ G 
Sbjct: 573 LLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESSPGLAIGTEQGV 632

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R          +     + L   D I+ +VE  T E D++  T   Q +R+  + +R 
Sbjct: 633 VKRVVPDYPSN--KEELEVISLKEGDRIVGAVELRTGEEDLIFITDDAQLLRYQAAQVRP 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + G+ GI L +G +VIS   +  A       +   +         +         
Sbjct: 691 -QGRPAGGMAGIKLTEGAKVISFTAIDPAVDAVVFTVAGSRGTLDDSVQTT--------- 740

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                             K T    +    R+  G+R     K 
Sbjct: 741 ---------------------------------AKLTPFDQYPRKGRATGGVRCQRFLKG 767

Query: 836 NE 837
            +
Sbjct: 768 ED 769



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 57/178 (32%), Gaps = 15/178 (8%)

Query: 731 KGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           K D ++S         +          R+  +          + +      L    +++ 
Sbjct: 548 KHDVIVSAVPATARGEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQD 607

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             +      L      +   +E+G  KR    D+  SN+    + +       E   +V 
Sbjct: 608 GETLVCLMTLDESSPGLAIGTEQGVVKRV-VPDYP-SNKEELEVISLK-----EGDRIVG 660

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + +I ++D   L+R    ++R   R   G+      +  +V+S   I  +
Sbjct: 661 AVELRTGEEDLIFITDDAQLLRYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPA 718



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 85/272 (31%), Gaps = 31/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++    +  G+        D I+S    T   ++   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTASAEPFTADEDGRRT----KHDVIVSAVPATARGEVGAVTSTG 571

Query: 704 QCVRFPISAIRVFAGRNSVGV--------RGISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +      ++             ++L  G+ ++ +  +  +           
Sbjct: 572 RLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLVCLMTLDESSPGLAIGTEQG 631

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     S   E       +             EL+  E+ ++ +++     R  + 
Sbjct: 632 VVKRVVPDYPSNKEELEVISLKEGDRIVG-----AVELRTGEEDLIFITDDAQLLRYQAA 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    +++      +++   ++     ++ +    +GTL          
Sbjct: 687 QVRPQGRPAGGMAGIKLTEG---AKVISFTAIDPAVDAVVFTVAGSRGTLDDSVQTTAKL 743

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E  +S+  
Sbjct: 744 TPFDQYPRKGRATGGVRCQRFLKGEDCLSIAW 775


>gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141]
          Length = 823

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSNIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC
           29200]
 gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312]
          Length = 823

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|257896174|ref|ZP_05675827.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
 gi|257832739|gb|EEV59160.1| DNA topoisomerase IV subunit A [Enterococcus faecium Com12]
          Length = 817

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKEAESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + +    ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++++  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIVNGLLVLADGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  I +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis]
 gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322]
 gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411]
 gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109]
 gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860]
 gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134]
 gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248]
 gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102]
 gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635]
 gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470]
 gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137]
 gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000]
 gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017]
 gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027]
 gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244]
 gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031]
 gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302]
 gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341]
 gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346]
 gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B]
 gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630]
 gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A]
 gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus
           faecalis OG1RF]
          Length = 823

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342]
          Length = 823

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62]
          Length = 820

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 480/904 (53%), Gaps = 102/904 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-----ER 896
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V       
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHFAV 813

Query: 897 IRES 900
           I E 
Sbjct: 814 IEEE 817


>gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583]
 gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
 gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583]
 gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1]
 gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8]
 gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5]
 gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1]
 gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6]
 gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188]
 gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11]
 gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11]
          Length = 820

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
 gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3]
          Length = 820

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDINAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467]
          Length = 823

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 484/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++ + L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
 gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733]
          Length = 817

 Score =  649 bits (1673), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  +L  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESENLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + +    ++ +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIQDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++++  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIVNGLLVLADGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  I +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEITLMNQKGQQITIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
 gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1]
 gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1]
          Length = 820

 Score =  648 bits (1672), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 484/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++ + L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNENELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|315640723|ref|ZP_07895825.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
 gi|315483478|gb|EFU73972.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus italicus DSM
           15952]
          Length = 817

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/898 (32%), Positives = 464/898 (51%), Gaps = 96/898 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E++  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G    K 
Sbjct: 2   EKKHSIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMHQDGNTAEKS 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLRNVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TV+F  N+D + +EP VL + +PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKVSSELLRDIDKETVEFVWNFDDTEKEPTVLPSMFPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+DG + +ID+PD  L+ LM  I GPDFPTG ++ G   IK AY TG+G +++
Sbjct: 182 PTHNLGEVIDGTIYLIDHPDASLEKLMTFIPGPDFPTGGILQGADEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++QIV++EIPY+VNKA +++++ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTRIEELKGGKQQIVISEIPYEVNKANLVKRMDEIRINKKIEGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++  +P++  L  +L ++VA R+ V++
Sbjct: 302 VVELKKEVNAEGILNYLFKNTDLQVNYNFNMVAIDQMRPKQVGLKQMLSSYVAHRQSVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y L KA  R H++ GL  A++ LDEV++ IR S +   A+  L+            
Sbjct: 362 RRSEYDLKKALARQHIVDGLIKALSILDEVIKTIRKSKDKRDAKNNLI------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              ++ Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 410 --------------LAHAFTQEQAEAIVTLQLYRLTNTDITQLQQEAEELLATIAELQKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +   + L  ++K+EL  VK +  + R T I      L ++ E  + +ED++V V+  GYV
Sbjct: 456 IQDSTELFKVMKKELREVKKQYQSERLTVIEAEVTELTIDTEILVAQEDVMVVVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A            M++ D V     ++T   +L  +  G +    V  LP 
Sbjct: 516 KRSSLRSYSASNNE-----EAGMKESDVVVYKGQLNTLDHLLLVTDKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L     +    I+     +       ++  T+ G ++R KLS+F   
Sbjct: 571 LRWKDVGEHLSQAL--TTLKIEENILTVLPYKQLSTTQELLILTQAGMIKRTKLSEFTPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQE----NDILLTTKLGQCVRFPISAIRVFAGRN 720
                     + L    D+++SV     +     DI + +     +R+ ++ +    G  
Sbjct: 629 RTYKTRPLPFITLKQEEDKVISVMVIEPQEIATQDIFMVSNRAYGLRYAVTDV-PVVGPR 687

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ ++L + D  +  AI++H D D                                 
Sbjct: 688 AAGVKAMNLKEDDATVVQAILVHTDGDTP------------------------------- 716

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              ++ ++++G  KR  + +   ++R+ +GI      K N    
Sbjct: 717 -------------------VVIITQRGAAKRMLAQELPQTSRAQRGIMVLRELK-NHPHR 756

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ +    D  +++L + KG    V  N+  IA R + G  +        +VSV+ + 
Sbjct: 757 IIYMGL-GDETELLLTNQKGDKKEVQANQFPIADRTSNGSFVLDEKSGGTIVSVDELP 813



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 78/266 (29%), Gaps = 67/266 (25%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  T+ G V+R+ L  +   N        +   D ++        + +LL T  G  + 
Sbjct: 506 MVVVTREGYVKRSSLRSYSASNNEEA---GMKESDVVVYKGQLNTLDHLLLVTDKGNMIY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +               L   D                                  
Sbjct: 563 RPVHELP-------------DLRWKD---------------------------------- 575

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
             E ++       +E NI      +     Q +L +++ G  KRT   +F          
Sbjct: 576 VGEHLSQALTTLKIEENILTVLPYKQLSTTQELLILTQAGMIKRTKLSEFTP-------W 628

Query: 828 RATDVSK------INEIGALVAVFPVNDND----QIILVSDKGTLIRVPVNEIRIASRAT 877
           R              E   +++V  +   +     I +VS++   +R  V ++ +     
Sbjct: 629 RTYKTRPLPFITLKQEEDKVISVMVIEPQEIATQDIFMVSNRAYGLRYAVTDVPVVGPRA 688

Query: 878 KGVVIFSTAKDERVVSVERIRESEIV 903
            GV   +  +D+  V    +  ++  
Sbjct: 689 AGVKAMNLKEDDATVVQAILVHTDGD 714


>gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012]
          Length = 823

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/904 (32%), Positives = 482/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSNIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L    G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVNNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I DE
Sbjct: 817 IEDE 820


>gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
 gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855]
          Length = 823

 Score =  648 bits (1671), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|220912389|ref|YP_002487698.1| DNA topoisomerase IV subunit A [Arthrobacter chlorophenolicus A6]
 gi|219859267|gb|ACL39609.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrobacter chlorophenolicus
           A6]
          Length = 836

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/855 (32%), Positives = 412/855 (48%), Gaps = 99/855 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +   ++      + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 6   SPAPVADTTPFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMS 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            MG+  ++ +VK AR+ GEVMGK HPHG+AAIYDA+ RMAQD+SLRL LI+G GNFGS+D
Sbjct: 66  DMGLRPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  L + L +D VDF PNYD    +P VL A +PN+LVNG  G
Sbjct: 126 -DGPAAPRYTEARLAPAALTLTNHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EV+     +I NPD  L+ LM  + GPD P+G  I+G  GI++AY
Sbjct: 185 IAVGMATNMAPHNLVEVISAARHLIANPDATLEDLMRFVPGPDLPSGGRIVGLDGIRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           ATGRGS   R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D
Sbjct: 245 ATGRGSFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVD 304

Query: 302 ESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIELK G +   +L QLYRYT ++  F +N V L   +P+   L+ +L  
Sbjct: 305 LTDRKHGLRLVIELKNGFNPTAVLQQLYRYTPMEDSFGINNVTLVDGQPQTLGLVALLSV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R +VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM  
Sbjct: 365 YVNHRIDVVRRRTIFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARERLMS- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E+Q   ILELRL +LT   R ++  E + L
Sbjct: 424 -------------------------IYDLTEIQANYILELRLRQLTKYSRIELEKEQDQL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI------- 533
             EI E   IL+S   L  ++  EL ++ +E  TPRRT ++E                  
Sbjct: 459 RREIAELEAILNSEELLRSLVSDELEAISEEHGTPRRTILLESEAVSPTVAAELAGSKKG 518

Query: 534 ---------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                      +     ++  G + R          +     +G   + + F   +   S
Sbjct: 519 KPAPLALEIADDPCWAILTASGQIGR-------TSNQEPLAEAGPRNKHDVFT-SVVKTS 570

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               +   +S G + + +V  +P+  P A    +   +       +              
Sbjct: 571 ARGEIAAITSQGRMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFAPL-- 628

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLG 703
           +  +   T  G V+R +    +       IA  L  +D ++ V     ++ +++  T   
Sbjct: 629 DEVLAIGTSQGVVKRVQPEYPLNREDWEVIA--LKDKDFVVGVAPAAADDTELVFLTAQA 686

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q ++F  SA+R   GR + G+ GI LA GD+V     V   D           + +    
Sbjct: 687 QLLKFAASAVRP-QGRTAGGMAGIKLAAGDRVAFFGAVRDQDEAAVVVTIAGTNGALPG- 744

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                                   +  G  K T+  ++ +  R+
Sbjct: 745 ----------------------------------------TAPGTAKVTAFSEYPVKGRA 764

Query: 824 GKGIRATDVSKINEI 838
             G+RA    K  + 
Sbjct: 765 TAGVRAHRFLKGEDT 779



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
               R+  ++ M             +            +  E        ++ +   + +
Sbjct: 579 TSQGRMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFAPLDEVLAIGTSQ 638

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRV 865
           G  KR    ++ + NR    + A       +   +V V P   +D +++ ++ +  L++ 
Sbjct: 639 GVVKRVQP-EYPL-NREDWEVIALK-----DKDFVVGVAPAAADDTELVFLTAQAQLLKF 691

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
             + +R   R   G+     A  +RV     +R+ + 
Sbjct: 692 AASAVRPQGRTAGGMAGIKLAAGDRVAFFGAVRDQDE 728



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 40/270 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++      T  G + R    + +            +  D   SV   +   +I   T  G
Sbjct: 529 DDPCWAILTASGQIGRTSNQEPLAEAGPR------NKHDVFTSVVKTSARGEIAAITSQG 582

Query: 704 QCVRFPISA---IRVFAG--RNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +     +   AG    + GV     ++L KG+ +++ A          + +  +
Sbjct: 583 RMLRLQVMDMPVLPPVAGLPNMAGGVPAKDFLTLLKGETLVAFA--------PLDEVLAI 634

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  +           +++              +  ++ ++ +    + ++ 
Sbjct: 635 GTSQGVVKRVQPEYPLNREDWEVIALKDKDFVVGVAPAAADDTELVFLTAQAQLLKFAAS 694

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVF-PVNDNDQIILV------------SDKGTL 862
             R   R+  G+    ++  +     VA F  V D D+  +V            +  GT 
Sbjct: 695 AVRPQGRTAGGMAGIKLAAGDR----VAFFGAVRDQDEAAVVVTIAGTNGALPGTAPGTA 750

Query: 863 IRVPVNEIRIASRATKGVVIFS-TAKDERV 891
                +E  +  RAT GV        ++ +
Sbjct: 751 KVTAFSEYPVKGRATAGVRAHRFLKGEDTL 780


>gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653]
 gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653]
          Length = 816

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/845 (33%), Positives = 418/845 (49%), Gaps = 94/845 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +M
Sbjct: 6   TKSPPPDDFEERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+   + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL +++G GNFGS+   
Sbjct: 66  GLRPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF PNYDGS QEPV L A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEVV     +I +P+ DLD LM  + GPD PTG  I+G  G+++AY 
Sbjct: 186 AVGMATNMPPHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIVGLAGVRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 TGRGSFKIRATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRAHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+  LM R 
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDR- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS+VQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FDLSDVQTQYILDTPLRRLTKFDRIELESERDRLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI+E   IL S + L  ++  EL +V  +  TPRRT ++E          +    +   
Sbjct: 460 AEIEELTRILDSDAELRKLVSSELATVGKKFGTPRRTVLLESADAPVAAVPLEVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R                        D +      +    V   +S G + 
Sbjct: 520 VLLSSTGLLAR-------TANGEPFAGEQTKRSKHDVIVSAVPATARAEVGAVTSTGRLL 572

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + +V  LP                +   LSL +GE +  +    E     ++  +   T+
Sbjct: 573 RLQVIDLPQLPESPGTPNLAGGAPIAEFLSLEEGEELICLTTLDE-----SSPGLAIGTE 627

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +     + L   D I+ +VE  T E D++  T     +R+P   
Sbjct: 628 QGVVKRVVPDYPAH--KEELEVIGLKEGDRIVGAVELRTGEEDLVFITDNAHLLRYPAGQ 685

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ G+ LA   +VIS   V  A       +             +      
Sbjct: 686 VRP-QGRAAGGMAGVKLAPDAKVISFTAVDPAVDAVVFTVSGTHGTLDDSVQQT------ 738

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                                K T    +    R+  G+R    
Sbjct: 739 ------------------------------------AKLTPFDQYPRKGRATGGVRCQRF 762

Query: 833 SKINE 837
            K  +
Sbjct: 763 LKGED 767



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 15/179 (8%)

Query: 730 AKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           +K D ++S         +          R+  +          + +      +    S+E
Sbjct: 545 SKHDVIVSAVPATARAEVGAVTSTGRLLRLQVIDLPQLPESPGTPNLAGGAPIAEFLSLE 604

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                     L      +   +E+G  KR    D+         +         E   +V
Sbjct: 605 EGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPAHK-EELEVIGLK-----EGDRIV 657

Query: 843 AVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               +    + ++ ++D   L+R P  ++R   RA  G+     A D +V+S   +  +
Sbjct: 658 GAVELRTGEEDLVFITDNAHLLRYPAGQVRPQGRAAGGMAGVKLAPDAKVISFTAVDPA 716



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 86/269 (31%), Gaps = 33/269 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +     ++ +        D I+S    T   ++   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANGEPFAGEQTKR-----SKHDVIVSAVPATARAEVGAVTSTG 569

Query: 704 QCVRFPISAIRVFA----GRNSVGVRGI----SLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +          N  G   I    SL +G+++I +  +  +          +
Sbjct: 570 RLLRLQVIDLPQLPESPGTPNLAGGAPIAEFLSLEEGEELICLTTLDES-----SPGLAI 624

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D            ++         EL+  E+ ++ +++     R  + 
Sbjct: 625 GTEQGVVKRVVPDYPAHKEELEVIGLKEGDRIVGAVELRTGEEDLVFITDNAHLLRYPAG 684

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-----------LIR 864
             R   R+  G+    ++       +++   V+     ++ +  GT              
Sbjct: 685 QVRPQGRAAGGMAGVKLAP---DAKVISFTAVDPAVDAVVFTVSGTHGTLDDSVQQTAKL 741

Query: 865 VPVNEIRIASRATKGVVIFS-TAKDERVV 892
            P ++     RAT GV        ++ +V
Sbjct: 742 TPFDQYPRKGRATGGVRCQRFLKGEDCLV 770


>gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
 gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol]
          Length = 820

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 482/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043]
          Length = 823

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMLLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1]
          Length = 817

 Score =  648 bits (1670), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/845 (34%), Positives = 420/845 (49%), Gaps = 93/845 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRIL+ M +M
Sbjct: 6   TKTPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+   + +VKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   
Sbjct: 66  GLRPERGFVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF PNYDGS QEP+ L A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEV+     +I +P  DLDALM  + GPD PTG  I+G  G+++AY 
Sbjct: 186 AVGMATNMAPHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIVGLGGVRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  I+D++D 
Sbjct: 246 KGRGTFKIRATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDL 305

Query: 303 SD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +D + G R+VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRQHGLRLVIEIKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A++ L+ R 
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIAR- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS+VQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FELSDVQTQYILDTPLRRLTKFDRIELESERDRLK 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI+E   IL S + L  ++  EL  V  +  T RRT ++E          +    +   
Sbjct: 460 AEIEELTRILDSDAELRKLVSAELAQVAKKFGTERRTVLLESADAPVTAVPLEVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R       A      G         D +      +    +   +S G + 
Sbjct: 520 VLLSSTGLLART------ANGEPFPGEEQAKRAKHDVIVSAVPATARGDLGAVTSTGRLL 573

Query: 600 KEKVWRLPI------GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LPI          A G  +   LSL  GE +  +    E     ++  +   T+
Sbjct: 574 RLAVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICLTTLDE-----SSPGLAIGTE 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +     + L   D I+ +VE  T E D++  T   Q +R+P S 
Sbjct: 629 QGVVKRVVPDYPAN--KDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYPASQ 686

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ GI L  G +VIS   V  A       I             S      
Sbjct: 687 VRP-QGRPAGGMAGIKLGAGAKVISFTAVDPAVDAVVFTIAGSHGTLDDSVQQS------ 739

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                                K T    +    R+  G+R    
Sbjct: 740 ------------------------------------AKLTPFDQYPRKGRATGGVRCQRF 763

Query: 833 SKINE 837
            K  +
Sbjct: 764 LKGED 768



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 15/179 (8%)

Query: 730 AKGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           AK D ++S        D         +  ++     I  +T    +L   + +   +S E
Sbjct: 546 AKHDVIVSAVPATARGDLGAVTSTGRLLRLAVVDLPILPETAWAPNLAGGAPIAEFLSLE 605

Query: 789 RCQEL------KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             +EL            +   +E+G  KR    D+   N+    +         E   +V
Sbjct: 606 DGEELICLTTLDESSPGLAIGTEQGVVKRV-VPDYPA-NKDELEVIGLK-----EGDRIV 658

Query: 843 AVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               +    + ++ ++D   L+R P +++R   R   G+         +V+S   +  +
Sbjct: 659 GAVELRTGEEDLVFITDDAQLLRYPASQVRPQGRPAGGMAGIKLGAGAKVISFTAVDPA 717



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 84/269 (31%), Gaps = 32/269 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +        K A      D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANGEPFPGEEQAKRA----KHDVIVSAVPATARGDLGAVTSTG 570

Query: 704 QCVRFPISAIRVFA----GRNSVGVRGI----SLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  + +        N  G   I    SL  G+++I +  +  +          +
Sbjct: 571 RLLRLAVVDLPILPETAWAPNLAGGAPIAEFLSLEDGEELICLTTLDES-----SPGLAI 625

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D            ++         EL+  E+ ++ +++     R  + 
Sbjct: 626 GTEQGVVKRVVPDYPANKDELEVIGLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYPAS 685

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    +        +++   V+     ++ +     GTL          
Sbjct: 686 QVRPQGRPAGGMAGIKLGAG---AKVISFTAVDPAVDAVVFTIAGSHGTLDDSVQQSAKL 742

Query: 865 VPVNEIRIASRATKGVVIFS-TAKDERVV 892
            P ++     RAT GV        ++ +V
Sbjct: 743 TPFDQYPRKGRATGGVRCQRFLKGEDCLV 771


>gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
 gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans
           P7]
 gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans
           P7]
          Length = 959

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/940 (31%), Positives = 473/940 (50%), Gaps = 88/940 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++         +  I  VSI + M  +YL YA+ V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MSKKTTIP---VDNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQ+++ R  LI+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  L+ D+ K  VD   NY  S +EP VL A+YPN+LVNG  
Sbjct: 118 DGDNAAAMRYTEARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+D  +A ID  DID   LME I+GPD PTG +I+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGGIIIGKKSLLSA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G + +R  + IE+    R  IV+TE PY+ +KA +L+ I+E+  +K+       I
Sbjct: 238 YETGEGRVTLRAKTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESI 297

Query: 297 ADLRDESDRQGYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE K      + D +L  L++ T +Q   S NMVAL   KP+   
Sbjct: 298 SDIRDESDRTGVRAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAKGKPQTMG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++  +++VV RRT+  +  A  R H++ G   A+  +DE++++IR S + + A
Sbjct: 358 LKTILYHYIEHQKDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L++                              +EVQ+ AILEL L RLTGL     
Sbjct: 418 GKNLIE--------------------------GFGFTEVQSEAILELMLYRLTGLEIVAF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L  EIK    ILSS   LL IIK+EL  ++++    R+T IVE      +  E+
Sbjct: 452 EKEHKELEKEIKRLNKILSSEKELLKIIKKELTEIREKYGDNRKTTIVENDDEAKINLEE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            IV ED+V+T+S+ G++KR+PL  Y            +  R+ DF   L   +T ++++F
Sbjct: 512 LIVEEDIVITMSNEGFIKRIPLKTYNRINAE---VGDIEYREGDFNKFLINSNTKSTLMF 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ K   +P    + +G+ + +I+      + + I+          +  ++F 
Sbjct: 569 FTDKGNMYQSKGINIPEFKWKDKGERIESIIKTLDVSQES-IVAVYSANDFMESQNLIFF 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T  G V++  +  F   N +  +A+KL + + ++ V    ++     I + T+ G     
Sbjct: 628 TDRGIVKKTGIDKF-NTNYTKIMALKLKNEERVIKVIIAPKDRKETFINIETEKGLKFVV 686

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA------------------IVLHADADYDE 750
               I   + RN +G++ ++L+  D++IS+                   I+  +D +   
Sbjct: 687 EEPKIEE-SDRNIMGLQLVNLSPKDRIISIDFTAEFVFKTFTLSINRFGIIKTSDRNRMS 745

Query: 751 RICYMKHMSAQRRLI-----------------SGDTEEITSLKNDSSVEGNISEERCQEL 793
                    ++ +++                 +   + I+       ++ +         
Sbjct: 746 SKPLSVSTDSKSKILIFSKDGNVFSTPAFMLQNVGEQGISIKDIWDDIDKDNIVNIISVK 805

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVNDNDQ 852
              +  I   ++KG  K+TS  +F      G           ++   L+ V    N  ++
Sbjct: 806 DFDDGNIYFFTKKGMVKKTSLKEFE-----GDYFSTIAYKFKSDKDILINVQLSKNTEEE 860

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           II+V+ +   IR   + I    +   GV   S  +D+ V+
Sbjct: 861 IIMVTKRAMCIRFQSDTINPMGKVASGVTGISLKEDDEVI 900



 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 77/229 (33%), Gaps = 18/229 (7%)

Query: 680 SRDEILSVE--TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           + DE          +E+ ++  +  G   R P+        R +  V  I   +GD    
Sbjct: 501 NDDEAKINLEELIVEEDIVITMSNEGFIKRIPLKT----YNRINAEVGDIEYREGDFNKF 556

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +                  + S    +     ++            ++S+E    +    
Sbjct: 557 LINSNTKSTLMFFTDKGNMYQSKGINIPEFKWKDKGERIESIIKTLDVSQESIVAVYSAN 616

Query: 798 QF-----ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            F     ++  +++G  K+T    F  +    K I A  +     +  ++          
Sbjct: 617 DFMESQNLIFFTDRGIVKKTGIDKFNTN--YTK-IMALKLKNEERVIKVIIAPKDRKETF 673

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRE 899
           I + ++KG  ++  V E  I  + R   G+ + + +  +R++S++   E
Sbjct: 674 INIETEKG--LKFVVEEPKIEESDRNIMGLQLVNLSPKDRIISIDFTAE 720


>gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
 gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98]
          Length = 820

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMLLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
 gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis
           ATCC 25644]
          Length = 817

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/907 (32%), Positives = 474/907 (52%), Gaps = 102/907 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E    I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K
Sbjct: 2   TETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G VMG YHPHG+++IY+A+ R++Q W LR  LIE  GN GS+DGDPPAA R
Sbjct: 62  PFRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + A  +L D+ K TV+  PN+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL E +   + ++D+P+ +LD LM+ I+GPDFPTG ++LG  GIK AY TGRG  +
Sbjct: 182 IPTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIMLGLDGIKKAYETGRGKAM 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G ++QIV+ EIPY+VNKA +++KI E+  +K+   IA++RDESDR+G R
Sbjct: 242 LRARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P+   L  IL++++  +  VV
Sbjct: 302 IVVELKKDANAQGILNYLFKNTDLQISYNFNMVAIDHKCPKHVGLKKILESYLEHQRIVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ LNKA++R H++ GL  A++ LD+V++ IR S N + A+  L+           
Sbjct: 362 TKRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLVS---------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           +   +E Q  AI+ L+L RLT      ++NE   L   I E   
Sbjct: 412 ----------------SFDFTEKQAEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGY 547
           IL++   L  +IK+EL ++  +  TPR T I   +    ++ E  + +ED+++ VS  GY
Sbjct: 456 ILNNGKELDKVIKKELKTIDKKYGTPRLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR  L  ++A            +++ED V  + + +T   +L F++ G V    +  + 
Sbjct: 516 VKRSSLRSFKASDESDN-----GLKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-- 665
               +  G+ L   + L+  ER+     F   E        VFATK G +++  L D   
Sbjct: 571 DSRWKDTGEHLSQTVGLSDDERVIEAFTFDSLE---KEGAFVFATKEGMIKQTLLKDLKP 627

Query: 666 -IQINRSGKIAMKLDSR-DEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRN 720
                   +  +KL +  DE++  E    EN+   +  TT  G  +R+ ++ +    G  
Sbjct: 628 GRTYRSRAQTFIKLKTDTDEVIMAEFVETENEDLQVFCTTHAGYGLRYLLNEV-PTTGAR 686

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GV+ + L   D +IS+++V   D                                   
Sbjct: 687 TSGVKCMDLR-DDFLISVSLVSEHD----------------------------------- 710

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                              +  V+++G  K+        ++R+ +G++     K N    
Sbjct: 711 ------------------EVAIVTQRGAFKKMKVDKIPENSRARRGVQILRELKRNPH-R 751

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA--KDERVVSVERIR 898
           +    PV + D++I+ +  G  I + V++     R + G  +  T    +  +V++ R +
Sbjct: 752 IFFAKPVIETDKLIIETTAGEKIELSVSDHPSCDRYSNGSFVLDTDSQGNPCLVTIVR-Q 810

Query: 899 ESEIVDE 905
           E++  DE
Sbjct: 811 ETDSEDE 817


>gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
 gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712]
 gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613]
 gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512]
 gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516]
          Length = 823

 Score =  647 bits (1669), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/904 (32%), Positives = 482/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IYDA+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 816

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/849 (33%), Positives = 421/849 (49%), Gaps = 95/849 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +M
Sbjct: 6   TKTPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPV L A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G TGI++AY 
Sbjct: 186 AVGMATNMPPHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIVGLTGIRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 SGRGTFKIRATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDL 305

Query: 303 SD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +D + G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRQHGLRLVIEIKNGFIPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +VV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++  
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIE-- 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+QT+ IL+  L RLT   R ++ +E + L 
Sbjct: 424 ------------------------HFSLSEIQTQYILDTPLRRLTKFDRIELESERDRLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI E   IL S + L  ++  EL +V  +  TPRRT ++E          +    +   
Sbjct: 460 GEIDELTGILESDAELRKLVSSELAAVAKKFGTPRRTVLLESAGTPAPAASLQVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R          R  + +  V       +    + +    V   +S G + 
Sbjct: 520 VLLSSTGLLARTATGEPLVDGRSRRSKHDV-------IVSAVLTTQRGEVGAVTSSGRLL 572

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP     A          +   LSL   E +  +    E     ++  +   T 
Sbjct: 573 RLSVIDLPQLPDTATTPNLAGGAPVAEFLSLEADETLICLTTLDE-----SSPGLALGTL 627

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +     + L   D I+   E  T E D++  T   Q +R+P S 
Sbjct: 628 QGVVKRVVPDYPAN--KEELEVITLREGDRIVGGAELHTGEEDLVFITSDAQLLRYPASQ 685

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ GI LA+G +VIS   V  A       +             +      
Sbjct: 686 VRP-QGRPAGGMTGIKLAEGAEVISFTAVDPAGEAVVFTVAGSHGTLDDSIATA------ 738

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                                K T    +    R+  G+R    
Sbjct: 739 -------------------------------------KLTPFDQYPRKGRATGGVRCQRF 761

Query: 833 SKINEIGAL 841
            K  ++  L
Sbjct: 762 LKGEDVLRL 770



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 78/266 (29%), Gaps = 31/266 (11%)

Query: 644 NNLYVVFATKHGNVRRNKL-SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
           ++   V  +  G + R       +               D I+S    TQ  ++   T  
Sbjct: 515 DDPCRVLLSSTGLLARTATGEPLVDGRSRRS------KHDVIVSAVLTTQRGEVGAVTSS 568

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ +R  +  +       +      +LA G  V     +   +                 
Sbjct: 569 GRLLRLSVIDLPQLPDTATTP----NLAGGAPVAEFLSLEADETLICLTTLDESSPGLAL 624

Query: 763 RLISGDTEEITSLKNDSSVEGNISEER-------CQELKLKEQFILTVSEKGFGKRTSSY 815
             + G  + +      +  E  +   R         EL   E+ ++ ++      R  + 
Sbjct: 625 GTLQGVVKRVVPDYPANKEELEVITLREGDRIVGGAELHTGEEDLVFITSDAQLLRYPAS 684

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG----------TLIRV 865
             R   R   G+    +++      +++   V+   + ++ +  G          T    
Sbjct: 685 QVRPQGRPAGGMTGIKLAEG---AEVISFTAVDPAGEAVVFTVAGSHGTLDDSIATAKLT 741

Query: 866 PVNEIRIASRATKGVVIFSTAKDERV 891
           P ++     RAT GV      K E V
Sbjct: 742 PFDQYPRKGRATGGVRCQRFLKGEDV 767



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 65/213 (30%), Gaps = 23/213 (10%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH-------ADADYDE 750
           L +  G   R       +  GR+         +K D ++S  +            +    
Sbjct: 521 LLSSTGLLARTATGE-PLVDGRS-------RRSKHDVIVSAVLTTQRGEVGAVTSSGRLL 572

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  +          + +      +    S+E + +      L      +   + +G  K
Sbjct: 573 RLSVIDLPQLPDTATTPNLAGGAPVAEFLSLEADETLICLTTLDESSPGLALGTLQGVVK 632

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPVNDNDQIILVSDKGTLIRVPVNE 869
           R    D+   N+    +         E   +V         + ++ ++    L+R P ++
Sbjct: 633 RV-VPDYPA-NKEELEVITLR-----EGDRIVGGAELHTGEEDLVFITSDAQLLRYPASQ 685

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +R   R   G+     A+   V+S   +  +  
Sbjct: 686 VRPQGRPAGGMTGIKLAEGAEVISFTAVDPAGE 718


>gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
 gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96]
          Length = 820

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/904 (32%), Positives = 482/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IYDA+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 808

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/893 (31%), Positives = 454/893 (50%), Gaps = 92/893 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++Q+W LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ KDTV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDISVSQLMKYVKGPDFPTGGIIQGIDGIKKAYETGKGRIVVRSTVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R++++VTEIPY+VNK+A+++KI EL  +KR+  I ++RDE+DR G R+ IELK
Sbjct: 245 TETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  ++D ILN LY+ T LQ  ++ NMVA++  +P+   +  I+ +++  + +VV +RT+Y
Sbjct: 305 KDVNSDAILNFLYKNTDLQISYNFNMVAISDGRPKLMGIREIIDSYLNHQIDVVTKRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL  A++ LDEV+ IIR S N + A+  L+                 
Sbjct: 365 DLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L  +I +  +IL +  
Sbjct: 410 -----------FDFTEEQAEAIVTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPR--RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    T R  R       + +  E  +  E+ ++++S  GY+KR  +
Sbjct: 459 ALLNVIKDELKEIRTRFKTERLSRIEAEIAEIKISKEVIVPSEETILSLSRDGYIKRTSV 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A R        V +++ D +      +T    L F++ G      V +LP    + 
Sbjct: 519 RSFNANR-----VDEVGLKEGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  ++ +   E +  +   P+ + + +    + ATK+G +++++L  F     +  
Sbjct: 574 LGQHISQLVPIENDEYVLDVFTEPDFKQNAD---YIMATKNGMIKKSELELFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAMKL   DE+++V     +  I + T  G  + +    +    G  + GV+ I+L   
Sbjct: 631 LIAMKLKDNDELINVMRIEADQLITIVTHTGMSLTYSTDELSS-TGLRAAGVKSINLKDD 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+ M                                                     +
Sbjct: 690 D-VVEMT----------------------------------------------------Q 696

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L      IL  +++G  KR        + R+ +GI+     K +    +V    ++D + 
Sbjct: 697 LIQPNDTILMATQRGAVKRIGFKVLSEAKRAQRGIKLLKELK-SRPHRIVGADVISDPES 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           I  +          V++I +  + T G  +  T +   V ++         DE
Sbjct: 756 IYTIYSNKDSFSGKVSDIHLTEQYTNGSFVVDTDEFGEVNALSVSVPETSKDE 808


>gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645]
          Length = 823

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 482/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 365 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 414 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 459 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 519 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 573

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 574 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 631

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 632 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 690

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 691 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 716

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 717 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 758

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 759 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 816

Query: 902 IVDE 905
           I +E
Sbjct: 817 IEEE 820


>gi|294631866|ref|ZP_06710426.1| DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292835199|gb|EFF93548.1| DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 818

 Score =  647 bits (1668), Expect = 0.0,   Method: Composition-based stats.
 Identities = 292/842 (34%), Positives = 420/842 (49%), Gaps = 83/842 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      DE  E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M 
Sbjct: 5   STKTPPPDEPYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   + YVKCAR+ GEVMGK HPHG+A+IYDAL R+AQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPERGYVKCARVVGEVMGKLHPHGDASIYDALVRLAQSFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+ +A   + + + +DTVDF PNYDG  QEPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMAEATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I  P+ DLDALM+ + GPD PTG  I+G +GI++A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLSGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K+I  IAD++
Sbjct: 245 YESGRGTFKIRATVTVETVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR++Y   + RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFEVVRRRSEYRRGRRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSEVQT+ IL+  L RLT   R ++  E   
Sbjct: 425 R--------------------------FSLSEVQTQYILDTPLRRLTKYDRIELEAEKEK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI+E   IL S + L  ++  EL +V  +  TPRRT ++E          +    + 
Sbjct: 459 LTAEIEELTRILDSDAELRKLVSTELAAVAKKFGTPRRTLLLEAGAVPVAAVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R P      Q   GK          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLARTPNDEPLPQDADGKRV------KHDVIVSSVPATARGEVGVVTSAGR 572

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF-PEDESSWNNLYVVFATKHGN 656
           + +  V  LP     A    L     + +   +              ++  +   T+ G 
Sbjct: 573 LLRVNVVDLPQLPETATAPNLSGGAPITEFVSLGDDETVICLTTLDESSPGLALGTEQGV 632

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R          +     + L   D I+ +VE  T E D++  T   Q +R+  S +R 
Sbjct: 633 VKRVVPDYPAN--KDELEVITLREGDRIVGAVELRTGEEDLVFITDDAQLLRYQASQVRP 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR + GV GI LA G +VIS   V  A       +   +         +         
Sbjct: 691 -QGRPAGGVAGIKLADGAKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTT--------- 740

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                             K T    +    R+  G+R     K 
Sbjct: 741 ---------------------------------AKVTPFDQYPRKGRATGGVRCQRFLKG 767

Query: 836 NE 837
            +
Sbjct: 768 ED 769



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 20/184 (10%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A G +V    IV    A     +  +       R+   D  ++       ++ G      
Sbjct: 542 ADGKRVKHDVIVSSVPATARGEVGVVTSAGRLLRVNVVDLPQLPETATAPNLSGGAPITE 601

Query: 790 CQELKLKEQFI-LTV-----------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              L   E  I LT            +E+G  KR    D+   N+    +         E
Sbjct: 602 FVSLGDDETVICLTTLDESSPGLALGTEQGVVKRV-VPDYPA-NKDELEVITLR-----E 654

Query: 838 IGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +V    +    + ++ ++D   L+R   +++R   R   GV     A   +V+S   
Sbjct: 655 GDRIVGAVELRTGEEDLVFITDDAQLLRYQASQVRPQGRPAGGVAGIKLADGAKVISFTA 714

Query: 897 IRES 900
           +  +
Sbjct: 715 VDPA 718



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 83/272 (30%), Gaps = 31/272 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    + +  +  GK        D I+S    T   ++ + T  G
Sbjct: 516 DDPCRVLLSSTGLLARTPNDEPLPQDADGKRV----KHDVIVSSVPATARGEVGVVTSAG 571

Query: 704 QCVRFPISAIRVFAGRNSV----GVRGIS----LAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +       +     G   I+    L   + VI +  +  +           
Sbjct: 572 RLLRVNVVDLPQLPETATAPNLSGGAPITEFVSLGDDETVICLTTLDESSPGLALGTEQG 631

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     +   E       +             EL+  E+ ++ +++     R  + 
Sbjct: 632 VVKRVVPDYPANKDELEVITLREGDRIVG-----AVELRTGEEDLVFITDDAQLLRYQAS 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    ++       +++   V+     ++ +    +GTL          
Sbjct: 687 QVRPQGRPAGGVAGIKLADG---AKVISFTAVDPAADAVVFTVAGSRGTLDDSVQTTAKV 743

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E  +S   
Sbjct: 744 TPFDQYPRKGRATGGVRCQRFLKGEDCLSFAW 775


>gi|297626461|ref|YP_003688224.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922226|emb|CBL56796.1| DNA gyrase subunit A (DNA topoisomerase (ATP-hydrolysing))
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 820

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/845 (33%), Positives = 414/845 (48%), Gaps = 83/845 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        ++ E+ I  V ++ EMQ SYL YA +VI  RA+PD RDGLKPV RRIL+GM
Sbjct: 1   MARTKTPPADDFEERIVDVDVSSEMQTSYLEYAYSVIYARALPDARDGLKPVQRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  +  +VKCAR+ G+VMGK HPHG++AIYDAL RM QDWS+RL L++G GNFGS+
Sbjct: 61  SEQRLTPDHPFVKCARVVGDVMGKLHPHGDSAIYDALVRMGQDWSMRLKLVDGHGNFGSL 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECRL  AA  +LD L +DTVDFRPNYDG   EP VL A +PN+LVNG  
Sbjct: 121 DA-GPAAMRYTECRLAPAAMPMLDGLHEDTVDFRPNYDGKQLEPAVLPAAFPNLLVNGAT 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP+HNLGEVV     ++ NP  ++D LM  + GPD PTG  I+G  GI+ A
Sbjct: 180 GIAVGMATNIPSHNLGEVVAALKYLLKNPGAEVDELMRYVPGPDLPTGGKIVGLDGIRAA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YATGRG    R  + IE+ S  R  IV+TE+P+ V    ++++I  LVR K+I  I+D++
Sbjct: 240 YATGRGIFRTRATARIEQVSPRRRGIVITELPFAVGPEKIIDQIKVLVRSKKITGISDVK 299

Query: 301 DESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L QLY++T L+  F +N VAL   +P   TL  +L+
Sbjct: 300 DLTDLTYGLRLVIEVKNGINPEALLAQLYKHTKLEDSFGINAVALVDGQPRTMTLKEMLQ 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV++RR K+ L KA+DR H++ GL +A+ ++D+V+ IIR S +   AR+ LM+
Sbjct: 360 VYLDHRLEVILRRAKFQLGKAQDRLHLVEGLLLAMIDIDDVIAIIRSSDDVPEARQRLME 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                     T  L E+Q   IL+++L RLT L R ++  E + 
Sbjct: 420 --------------------------TFELDEIQANYILDMQLRRLTKLSRIELETERDE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI----VR 535
           L   I E  +++         +  +L  +     +PRRT ++EG                
Sbjct: 454 LRRRITELTELIDDPDLQRDTVASQLSEMAATYGSPRRTVLLEGSGAAAALPAQPLEIPD 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +   V +S  G + R+           G   +       D V     V+ H      +S 
Sbjct: 514 DPCWVMMSSTGLMARMTRPAD--GDDPGHLPTSGPRGRHDVVVAAIAVTAHAQFGVLTSH 571

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKH 654
           G + K +   LP     A   +L     +     +T           + ++  +   T+ 
Sbjct: 572 GRLVKAEAIDLPEVVGTANAPSLRGGSRVEDLLVLTDAERAVGLTTLAEDSAGLALGTRR 631

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R       +        ++L+  DE++  VE     ++++  T   Q + F    +
Sbjct: 632 GVVKRVNPEVLSK---DEWDVIRLEDNDEVVGGVELTDPSDELVFVTSDAQLLHFAADLV 688

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR+  GV G+ L  G  V+   +    DA           +   +           
Sbjct: 689 RP-QGRSGGGVAGVRLTGGSSVVWFGVSPATDAVVVTLSGTSSMLPGAQT---------- 737

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                            G  K T   D+    R+  G+R     
Sbjct: 738 ---------------------------------GSVKVTPFEDYPPKGRATGGVRCHRFL 764

Query: 834 KINEI 838
           K  + 
Sbjct: 765 KGEDG 769



 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 836 NEIGALVA-VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +   +V  V   + +D+++ V+    L+    + +R   R+  GV          VV  
Sbjct: 653 EDNDEVVGGVELTDPSDELVFVTSDAQLLHFAADLVRPQGRSGGGVAGVRLTGGSSVVWF 712

Query: 895 ERIRESEIV 903
                ++ V
Sbjct: 713 GVSPATDAV 721



 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 25/209 (11%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G+ V+     +    G  +      SL  G +V  + ++  A+            
Sbjct: 567 VLTSHGRLVKAEAIDLPEVVGTANAP----SLRGGSRVEDLLVLTDAERAVGLTTLAEDS 622

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE------LKLKEQFILTVSEKGFGKR 811
                    G  + +            I  E   E      L      ++ V+       
Sbjct: 623 AGLALGTRRGVVKRVNPEVLSKDEWDVIRLEDNDEVVGGVELTDPSDELVFVTSDAQLLH 682

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT---------- 861
            ++   R   RSG G+    ++     G+ V  F V+     ++V+  GT          
Sbjct: 683 FAADLVRPQGRSGGGVAGVRLT----GGSSVVWFGVSPATDAVVVTLSGTSSMLPGAQTG 738

Query: 862 -LIRVPVNEIRIASRATKGVVIFSTAKDE 889
            +   P  +     RAT GV      K E
Sbjct: 739 SVKVTPFEDYPPKGRATGGVRCHRFLKGE 767


>gi|84496203|ref|ZP_00995057.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
 gi|84382971|gb|EAP98852.1| DNA gyrase subunit A [Janibacter sp. HTCC2649]
          Length = 816

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/853 (32%), Positives = 411/853 (48%), Gaps = 89/853 (10%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T +  + D+E    +  + +  EMQN++L Y+++VI  RA+PD+RDGLKPV RRILF M 
Sbjct: 6   TSNPQADDDENNGHVVDIDVGIEMQNAFLEYSVSVIHSRALPDVRDGLKPVQRRILFSMS 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VK +R+ G+VMGKYHPHG+ AIYDAL RMAQ +++RL L++G GNFGS+D
Sbjct: 66  EMGLRPDRGHVKSSRVVGDVMGKYHPHGDTAIYDALVRMAQPFTMRLPLVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +   L +DTVDF PNYD    +P VL A YPN+LVNG  G
Sbjct: 126 -DGPAASRYTEARLAPAALVMTTGLDEDTVDFVPNYDDQLLQPGVLPAAYPNLLVNGVSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG AT++P HNL EV+     +I +PD  LD LM+ + GPD P G  I+G  GI++AY
Sbjct: 185 IAVGFATSMPPHNLVEVISAARHLIAHPDCSLDDLMKFVPGPDLPLGGKIVGLDGIRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG+G+   R  + IEK +  +  IVVTE+PY V    ++E++  LV+ K++  I+D++D
Sbjct: 245 LTGKGTFKTRATTRIEKLTPRKSGIVVTELPYLVGPEKVIERMKTLVQGKKLQGISDVKD 304

Query: 302 ESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G + + +L QL++ T ++  F +N VAL   +P+   L  +L+ 
Sbjct: 305 LTDRKHGLRMVIEVKNGFNPEAVLEQLFKLTPMEDSFGINNVALVDGQPQTLGLKDLLRH 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V FR  VV RRT Y L KA+D+ H+++GL IA+ ++DEV+++IR S +  TAR+ L   
Sbjct: 365 YVEFRILVVRRRTAYRLRKAQDQLHLVLGLLIAILDIDEVIQLIRTSDDTATARQRL--- 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q   ILEL+L RLT   R ++ N+ + L
Sbjct: 422 -----------------------RDVFDLSELQANYILELQLRRLTKFSRLELENQRDEL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRED 537
             +I+E   IL     L  ++  EL  V  +  TPRRT ++E   +            + 
Sbjct: 459 EKQIQELEAILGDEKLLQRMVSTELADVAKKYGTPRRTVLLESAGNPVSAAAPLEVSDDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R                 G   + +  V      +    V   +S G 
Sbjct: 519 CWVLLSSTGLLAR-------TSNAEPIPAEGPRAKHDA-VISAVRTTARGEVGLVTSRGR 570

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGN 656
           + +     LP   P     +L     L           P        +   +   T  G 
Sbjct: 571 MIRISALELPTLPPLGGAPSLSGGAPLAAYVDLPRGEEPITVVSLDPDGPGLALGTAQGI 630

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRV 715
           V+R                + L   D ++   +  T + D++  T   Q +RFP  A+R 
Sbjct: 631 VKRVTSDQ---PKSHDWEVISLKDGDTVVGAGQVVTGDEDLVFVTSDAQLLRFPAHAVRP 687

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+  G+ G+ L  G++V    +V  A                               
Sbjct: 688 -QGRSGGGIAGVRLTAGERVAFFGVVDPAREAVVVTASGSADALPG-------------- 732

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                       ++ G  K T   ++    R   G+RA    K 
Sbjct: 733 ----------------------------TQPGAIKATPLSEYPGKGRGTGGVRAHRFLKG 764

Query: 836 NEIGAL--VAVFP 846
                L  V   P
Sbjct: 765 ENTLVLAWVGAMP 777



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 67/216 (31%), Gaps = 35/216 (16%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G   R   +      G  +         K D VIS              +  +  
Sbjct: 522 LLSSTGLLARTSNAEPIPAEGPRA---------KHDAVISAV-----RTTARGEVGLVTS 567

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV------------SE 805
                R+ + +   +  L    S+ G        +L   E+ I  V            + 
Sbjct: 568 RGRMIRISALELPTLPPLGGAPSLSGGAPLAAYVDLPRGEEPITVVSLDPDGPGLALGTA 627

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVNDNDQIILVSDKGTLIR 864
           +G  KR +S     S+         +V  + +   +V     V  ++ ++ V+    L+R
Sbjct: 628 QGIVKRVTSDQ-PKSH-------DWEVISLKDGDTVVGAGQVVTGDEDLVFVTSDAQLLR 679

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            P + +R   R+  G+        ERV     +  +
Sbjct: 680 FPAHAVRPQGRSGGGIAGVRLTAGERVAFFGVVDPA 715



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 84/264 (31%), Gaps = 32/264 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ I               D ++S    T   ++ L T  G
Sbjct: 516 DDPCWVLLSSTGLLARTSNAEPIPAEGPRA------KHDAVISAVRTTARGEVGLVTSRG 569

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + +R     +              SL+ G  + +   +   +                  
Sbjct: 570 RMIRISALELPTLPPLGGAP----SLSGGAPLAAYVDLPRGEEPITVVSLDPDGPGLALG 625

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLK------EQFILTVSEKGFGKRTSSYDF 817
              G  + +TS +  S     IS +    +         ++ ++ V+      R  ++  
Sbjct: 626 TAQGIVKRVTSDQPKSHDWEVISLKDGDTVVGAGQVVTGDEDLVFVTSDAQLLRFPAHAV 685

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVF-PVNDNDQIILVSDKGTL----------IR-V 865
           R   RSG GI    ++        VA F  V+   + ++V+  G+           I+  
Sbjct: 686 RPQGRSGGGIAGVRLTAGER----VAFFGVVDPAREAVVVTASGSADALPGTQPGAIKAT 741

Query: 866 PVNEIRIASRATKGVVIFSTAKDE 889
           P++E     R T GV      K E
Sbjct: 742 PLSEYPGKGRGTGGVRAHRFLKGE 765


>gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
 gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200]
          Length = 820

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIVEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
 gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071]
 gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039]
 gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162]
          Length = 816

 Score =  646 bits (1667), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 473/892 (53%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|327469988|gb|EGF15452.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK330]
          Length = 816

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/902 (32%), Positives = 463/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPCLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KISYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  L    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFLSPAKTTQHMLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +  ++++G  KR +  D  +++R+ +G++     K      + A  PV 
Sbjct: 704 -----------LYLLTQRGSIKRMAVADIPVTSRANRGLQVLRELKTKPH-RVFAAGPVF 751

Query: 849 ---------------DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KGT   + + +  ++ R + G  I  T  DE V 
Sbjct: 752 GETVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADFSLSERTSNGSFISDTISDEEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFLSPAKTTQHMLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C]
 gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C]
          Length = 818

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/841 (34%), Positives = 415/841 (49%), Gaps = 85/841 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 E+ E+ I  + + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRI++ M +M
Sbjct: 6   TKTPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+ +IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTEC++  A   + + + +DTVDF  NYDG  +EPV L A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEV+     +I  P+ DL+ALM  + GPD PTG  I+G +GIK+AYA
Sbjct: 186 AVGMATNMAPHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGGRIVGLSGIKDAYA 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 NGRGTFKIRATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQPLTMGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM+R 
Sbjct: 366 LDHRFEVVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FSLSEVQTQYILDTPLRRLTRFDRIELESERDRLT 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI E   IL S S L  ++  EL +V  +  T RRT ++E          +    +   
Sbjct: 460 GEIDELTGILESDSALRKLVSAELAAVAKKFGTERRTVLLESAGTSVAAVPLEVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R           GG        + +  V+ +   +    V   +S G + 
Sbjct: 520 VLLSSTGLLARTANGDPLPVEEGG-----ARAKHDVIVSQVAATARAD-VGAVTSYGRLL 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +  V  LP     A    L     +++                   ++  +   T+ G V
Sbjct: 574 RLAVIDLPQLPDTAAAPNLAGGAPVSEFLSGLEADETVVCLLSLDESSQGLALGTEQGVV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R          +     + L   D I+ +VE  T E D++  T   Q +R+P   +R  
Sbjct: 634 KRVVPDYPAN--KDELEVITLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYPAGQVRP- 690

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G+ GI LA+  +VI  + V  A       +                        
Sbjct: 691 QGRPAGGMAGIKLAENAKVIHFSAVDPARDAVVFTVAGSHGTLDDSVRS----------- 739

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                           GK T    +    R+  G+R     K  
Sbjct: 740 --------------------------------GKLTPFDQYPRKGRATGGVRCQRFLKGE 767

Query: 837 E 837
           +
Sbjct: 768 D 768



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 8/142 (5%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                           +  S +E + +      L    Q +   +E+G  KR    D+  
Sbjct: 584 PDTAAAPNLAGGAPVSEFLSGLEADETVVCLLSLDESSQGLALGTEQGVVKRV-VPDYPA 642

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
            N+    +         E   +V    +    + ++ ++D   L+R P  ++R   R   
Sbjct: 643 -NKDELEVITLK-----EGDRIVGAVELRTGEEDLVFITDDAQLLRYPAGQVRPQGRPAG 696

Query: 879 GVVIFSTAKDERVVSVERIRES 900
           G+     A++ +V+    +  +
Sbjct: 697 GMAGIKLAENAKVIHFSAVDPA 718



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 88/271 (32%), Gaps = 29/271 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    D + +   G  A      D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANGDPLPVEEGGARA----KHDVIVSQVAATARADVGAVTSYG 570

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQV--------ISMAIVLHADADYDERICYM 755
           + +R  +  +       +      +LA G  V            +V     D   +   +
Sbjct: 571 RLLRLAVIDLPQLPDTAAAP----NLAGGAPVSEFLSGLEADETVVCLLSLDESSQGLAL 626

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  E+ ++ +++     R  + 
Sbjct: 627 GTEQGVVKRVVPDYPANKDELEVITLKEGDRIVGAVELRTGEEDLVFITDDAQLLRYPAG 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL---IR----V 865
             R   R   G+    +++      ++    V+     ++ +     GTL   +R     
Sbjct: 687 QVRPQGRPAGGMAGIKLAE---NAKVIHFSAVDPARDAVVFTVAGSHGTLDDSVRSGKLT 743

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P ++     RAT GV      K E V+++  
Sbjct: 744 PFDQYPRKGRATGGVRCQRFLKGEDVLTLAW 774


>gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796]
          Length = 804

 Score =  646 bits (1666), Expect = 0.0,   Method: Composition-based stats.
 Identities = 290/838 (34%), Positives = 483/838 (57%), Gaps = 49/838 (5%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +E+++SYL YA++VI+GRAIPD+RDGLKPV RRI++ M +MG+ ++K + KCAR+ GE
Sbjct: 8   VEEEVKDSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKPHKKCARVVGE 67

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GK+HPHG+ A+YDAL RMAQD++ R  LI+G GNFGS+DGD  AA RYTE RL K ++
Sbjct: 68  VLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRYTEARLAKISN 127

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            L+ ++G + V  + N+DGS +EP VL A++P +L NG  GIAVGMAT+IP HNLGE++D
Sbjct: 128 TLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSIPPHNLGELID 187

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
             + ++ NP +  + L++++ GPDFPTG +I+G+ GIK  + TG+G I++RG  H  +  
Sbjct: 188 ALLLILKNPQVSEEELLKVLTGPDFPTGGIIVGKNGIKEYFLTGKGKIILRGR-HKIEMG 246

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
               ++V++EIPY VNKA ++EKI +L++EKR+  ++++RDES R+G R+V++LK+GA++
Sbjct: 247 SKTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIRIVLDLKKGANS 306

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           + I+ +LY++T++Q  F V M++L    P+   +  +L  F+ FR+++  +R + +L   
Sbjct: 307 EKIVKKLYKHTTMQITFGVIMLSLVAGVPKVLPVKDVLLHFLTFRKDIQRKRLEKILEDL 366

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
           + R  +L  L+ A+  +D+V+ II+ S NP  A++ L +                     
Sbjct: 367 KKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCE--------------------- 405

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + +SE   + IL+LRL RLT L R+ I  +L    +EIKE    L+   + L I
Sbjct: 406 -----FLQISEEGAQGILDLRLQRLTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEI 460

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVVTVSHLGYVKRVPLSVYRAQ 559
           ++ EL+ +K      RRT I     + +  +  + E +++VT+S LG++KR+   V+  Q
Sbjct: 461 LENELVEIKSNFADKRRTEISLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKKDVFERQ 520

Query: 560 RRGGKGRSGVVMRD--EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
            +GGKG  G+      +D +    ++S    +LF SS G  Y    + +P  S  +RG  
Sbjct: 521 NKGGKGIDGIQKSSAIQDRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTG 580

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           + NIL L++ E+IT ++   E+E   +   ++ AT  G +++ KL + +   R+G IA+K
Sbjct: 581 IANILPLSEDEKITFMVQIKEEEIKKD---IILATSMGYLKKIKLENIVSKRRNGVIAIK 637

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  + ++      +E  +L  +  G      +  +R   G NS GV G+ L+K D+++ 
Sbjct: 638 LNDSESVVGACMVCEEKFLLY-SSNGFATLANLKDLRNM-GNNSHGVIGMRLSKDDKLLG 695

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +               Y   +          ++  TS K  +        +    L  KE
Sbjct: 696 IV----------PDSKYFIVIDKNGNGKKVSSDNFTSHKRGTKGVRVSKNKLATILNYKE 745

Query: 798 QFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
              L + +EKG   R      +  +R+ KG     + K+++  +++    V  N  +I
Sbjct: 746 GMDLIIYTEKGKVIRIDIDSVKQLSRNAKG---IKLQKLDKADSVLDATIVRPNTDLI 800


>gi|324992853|gb|EGC24773.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK405]
 gi|327462160|gb|EGF08487.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1]
          Length = 816

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/902 (32%), Positives = 463/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +  LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +  ++++G  KR +  D  +++R+ +G++     K      + A  PV 
Sbjct: 704 -----------LYLLTQRGSIKRMAVADIPVTSRANRGLQVLRELKTKPH-RVFAAGPVF 751

Query: 849 ---------------DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V 
Sbjct: 752 GEAVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
 gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2]
          Length = 820

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 483/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
 gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1]
          Length = 818

 Score =  646 bits (1665), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/841 (33%), Positives = 417/841 (49%), Gaps = 85/841 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 E+ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +M
Sbjct: 6   TKTPPPEDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTEC++  A   + + + +DTVDF  NYDG  +EPV L A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  I+G +GIK+AY 
Sbjct: 186 AVGMATNMPPHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGGRIVGLSGIKDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 NGRGTFKIRATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRSHGLRLVIEIKNGFHPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  L++R 
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+QT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDRLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI E   IL S S L  ++  EL +V  +  T RRT ++E          +        
Sbjct: 460 GEIDELTGILESDSELRKLVSAELAAVAKKFGTERRTVLLESAGTPVAAVPLEVADTPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R        Q  GG        + +  V+ +   +    V   +S G + 
Sbjct: 520 VLLSSTGLLARTANGEALPQEEGG-----ARAKHDLIVSQVAATARAD-VGVVTSYGRLL 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQG--ERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +  V  LP          L     + +                   ++  +   T+ G V
Sbjct: 574 RLSVIDLPQLPDTHAAPNLAGGAPVAEFLSGLEADEKVVCLTSLDESSQGLALGTEQGVV 633

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R          +     + L   D I+ +VE  T E D++  T   Q +R+P S +R  
Sbjct: 634 KRVVPDYPAN--KDELEVITLKDGDRIVGAVELRTGEEDLVFITDDTQLLRYPASQVRP- 690

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G+ GI L+   +VI  + V  A   +   +                        
Sbjct: 691 QGRPAGGMAGIKLSDNTKVIHFSAVDPARDAFVFTVAGSHGTLDD--------------- 735

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                    +V+    GK T    +    R+  G+R     K  
Sbjct: 736 -------------------------SVTS---GKLTPFDQYPRKGRATGGVRCQRFLKGE 767

Query: 837 E 837
           +
Sbjct: 768 D 768



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 8/142 (5%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                           +  S +E +        L    Q +   +E+G  KR    D+  
Sbjct: 584 PDTHAAPNLAGGAPVAEFLSGLEADEKVVCLTSLDESSQGLALGTEQGVVKRV-VPDYPA 642

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
            N+    +         +   +V    +    + ++ ++D   L+R P +++R   R   
Sbjct: 643 -NKDELEVITLK-----DGDRIVGAVELRTGEEDLVFITDDTQLLRYPASQVRPQGRPAG 696

Query: 879 GVVIFSTAKDERVVSVERIRES 900
           G+     + + +V+    +  +
Sbjct: 697 GMAGIKLSDNTKVIHFSAVDPA 718



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 33/273 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +  G + R    + +     G  A      D I+S    T   D+ + T  G
Sbjct: 515 DTPCRVLLSSTGLLARTANGEALPQEEGGARA----KHDLIVSQVAATARADVGVVTSYG 570

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--------SMAIVLHADADYDERICYM 755
           + +R  +  +      ++      +LA G  V            +V     D   +   +
Sbjct: 571 RLLRLSVIDLPQLPDTHAAP----NLAGGAPVAEFLSGLEADEKVVCLTSLDESSQGLAL 626

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  E+ ++ +++     R  + 
Sbjct: 627 GTEQGVVKRVVPDYPANKDELEVITLKDGDRIVGAVELRTGEEDLVFITDDTQLLRYPAS 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS------------DKGTLI 863
             R   R   G+    +S   +   ++    V+      + +              G L 
Sbjct: 687 QVRPQGRPAGGMAGIKLSDNTK---VIHFSAVDPARDAFVFTVAGSHGTLDDSVTSGKL- 742

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             P ++     RAT GV      K E V+ +  
Sbjct: 743 -TPFDQYPRKGRATGGVRCQRFLKGEDVLVLAW 774


>gi|294614809|ref|ZP_06694704.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
 gi|291592271|gb|EFF23885.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1636]
          Length = 816

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 473/892 (53%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|257884845|ref|ZP_05664498.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
 gi|257820683|gb|EEV47831.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,501]
          Length = 817

 Score =  645 bits (1664), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 473/892 (53%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDRPGLDVFLVTYQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 554

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 286/548 (52%), Positives = 383/548 (69%), Gaps = 9/548 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH 
Sbjct: 487 ELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQ 546

Query: 546 GYVKRVPL 553
           GYVK  PL
Sbjct: 547 GYVKYQPL 554


>gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
 gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704]
          Length = 820

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 296/904 (32%), Positives = 482/904 (53%), Gaps = 97/904 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 242 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+  +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++
Sbjct: 302 VVELKKDVNAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVII 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+            
Sbjct: 362 NRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     D++ E  +L  +I E L+I
Sbjct: 411 ---------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV+H GY+
Sbjct: 456 LNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    V  LP 
Sbjct: 516 KRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         +I+     +        VF TK G +++ K++DF   
Sbjct: 571 LRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKMADFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL S  DEI +V     ++  D+ L +  G  +R+P+  +    G  + 
Sbjct: 629 RTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PVVGSKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L + D V++  +V                                         
Sbjct: 688 GVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V  +  + 
Sbjct: 756 --FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVHEMHSAV 813

Query: 902 IVDE 905
           I +E
Sbjct: 814 IEEE 817


>gi|119963748|ref|YP_947533.1| DNA topoisomerase IV subunit A [Arthrobacter aurescens TC1]
 gi|119950607|gb|ABM09518.1| putative DNA gyrase subunit A [Arthrobacter aurescens TC1]
          Length = 838

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/853 (33%), Positives = 410/853 (48%), Gaps = 102/853 (11%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
               +  + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+ 
Sbjct: 12  EPLGDFTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSDMGLR 71

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PA
Sbjct: 72  PDRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPA 130

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  + D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGM
Sbjct: 131 APRYTEARLAAAALTMTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGTTGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+P HNL EV+     +I NP   L+ +M  I GPD PTG  I+G  G+++AYATGRG
Sbjct: 191 ATNMPPHNLVEVIAAARHLIANPGATLEEIMRFIPGPDLPTGGRIVGLDGVRDAYATGRG 250

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           S   R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +D  
Sbjct: 251 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNSKKLTGISDVVDLTDRN 310

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L+ +V  R
Sbjct: 311 HGLRLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLLQLLQVYVEHR 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM       
Sbjct: 371 LNVVRRRTSFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEASAARERLMS------ 424

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q   ILELRL +LT   R ++  E + L  EI+
Sbjct: 425 --------------------IYDLTEIQANYILELRLRQLTKYSRLELEKEQDELRREIE 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC------------- 532
               IL+S   L  ++  EL  + ++  TPRRT ++E                       
Sbjct: 465 ALEAILASDELLRDLVSGELAVIAEKYGTPRRTVLLESEAVSPTVAAALAASVPGPKGKA 524

Query: 533 ------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
                 I  +     +S  G + R          +     +G   + + F   +   +  
Sbjct: 525 AALPLEIPDDPCWALLSVSGQIAR-------TSNQEPLAEAGPRTKHDVF-RSVVKTTAR 576

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +   +S G + + +V  +P+  P +    L   +       +              + 
Sbjct: 577 GEIGAVTSQGRMLRLQVMDMPVLPPVSGLPNLAGGVPAKDFITLLKGETLVAFVPL--DA 634

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQC 705
            +   T  G V+R +    +       IA  L  +D +L+VE    +N D++  T+  Q 
Sbjct: 635 VLAIGTVQGVVKRVQPDYPLNREDWEIIA--LKDKDLVLAVEPAQDDNVDLVFVTRQAQL 692

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +RF  S +R   GR + G+ GI LA GD+VI    V   D           + +      
Sbjct: 693 LRFSASNVRP-QGRTAGGMAGIKLAAGDEVIHFGTVRADDPAAVVVTIAGTNGALPG--- 748

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                                 +  G  K T+  ++    R+  
Sbjct: 749 --------------------------------------TAPGTAKVTAFEEYPAKGRATG 770

Query: 826 GIRATDVSKINEI 838
           G+R     K  + 
Sbjct: 771 GVRVHRFLKGEDT 783



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 800 ILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVS 857
           +L + + +G  KR    D+ + NR    I A       +   ++AV P  D++  ++ V+
Sbjct: 635 VLAIGTVQGVVKRVQP-DYPL-NREDWEIIALK-----DKDLVLAVEPAQDDNVDLVFVT 687

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            +  L+R   + +R   R   G+     A  + V+    +R  +
Sbjct: 688 RQAQLLRFSASNVRPQGRTAGGMAGIKLAAGDEVIHFGTVRADD 731



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 83/270 (30%), Gaps = 38/270 (14%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++      +  G + R    + +               D   SV   T   +I   T  
Sbjct: 532 PDDPCWALLSVSGQIARTSNQEPLAEAGPRT------KHDVFRSVVKTTARGEIGAVTSQ 585

Query: 703 GQCVRFPISA---IRVFAGRN--SVGVRG---ISLAKGDQVISMAIVLHADADYDERICY 754
           G+ +R  +     +   +G    + GV     I+L KG+ +++            + +  
Sbjct: 586 GRMLRLQVMDMPVLPPVSGLPNLAGGVPAKDFITLLKGETLVAFV--------PLDAVLA 637

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +    + +  D           +++        +  +     ++ V+ +    R S+
Sbjct: 638 IGTVQGVVKRVQPDYPLNREDWEIIALKDKDLVLAVEPAQDDNVDLVFVTRQAQLLRFSA 697

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV------------SDKGTL 862
            + R   R+  G+    ++       ++    V  +D   +V            +  GT 
Sbjct: 698 SNVRPQGRTAGGMAGIKLAAG---DEVIHFGTVRADDPAAVVVTIAGTNGALPGTAPGTA 754

Query: 863 IRVPVNEIRIASRATKGVVIFS-TAKDERV 891
                 E     RAT GV +      ++ +
Sbjct: 755 KVTAFEEYPAKGRATGGVRVHRFLKGEDTL 784


>gi|319939076|ref|ZP_08013440.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
 gi|319812126|gb|EFW08392.1| DNA topoisomerase 4 subunit A [Streptococcus anginosus 1_2_62CV]
          Length = 818

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/903 (31%), Positives = 464/903 (51%), Gaps = 111/903 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIVVTEIPY +NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYDINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +          V  RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNSS-----TVDEVGKRDDDRLVFVSSAKTTQHLLIFTNLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           ++   ++       TK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTITNFETNEEVLYAELVDN---FDEGTYFALTKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +   +  + +D++L T+ G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSVKFAKLKNEDDQIITLSPIKLDDVMLVTQNGYALRFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKND-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-----GALVA 843
                      +  ++++G  KR +  D  +++R+ +G++     K         G +  
Sbjct: 704 -----------LYILTQRGALKRMAVADIPVTSRANRGLQVLRELKSKPHRVFQAGPVFG 752

Query: 844 VFPVN-----------DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             P             + +QI+ +VS+KGT  +V + ++ ++ R + G  I  T  DE V
Sbjct: 753 EQPAELDLFSSDHPTAEEEQILSIVSNKGTTYQVNLADLGLSERTSNGSFISDTISDEEV 812

Query: 892 VSV 894
            S 
Sbjct: 813 FSA 815



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELREVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETFVSVTRGGYLKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S +     R             D+++   S     H     +      + +  
Sbjct: 516 SPRSFNSSTVDEVGKR-----------DDDRLVFVSSAKTTQHLLIFTNLGNVIYRPVHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF--- 817
              +   +  E  S    +                 E     +++ G  KR    +F   
Sbjct: 565 LADIRWKEIGEHLSQTITNFETNEEVLYAELVDNFDEGTYFALTKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R      K ++   +   NE   ++ + P+  +D ++LV+  G  +R  + E+ +     
Sbjct: 625 RTYK--SKSVKFAKL--KNEDDQIITLSPIKLDD-VMLVTQNGYALRFNIEEVPVVGAKA 679

Query: 878 KGVVIFSTAKDERVVSVERIRESE 901
            GV   +  K++ V++   I  ++
Sbjct: 680 AGVKAINLKKND-VLAAAFIANTD 702


>gi|261207616|ref|ZP_05922301.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289565128|ref|ZP_06445581.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
 gi|260077999|gb|EEW65705.1| DNA topoisomerase IV subunit A [Enterococcus faecium TC 6]
 gi|289163135|gb|EFD10982.1| DNA topoisomerase IV, A subunit [Enterococcus faecium D344SRF]
          Length = 817

 Score =  645 bits (1663), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 473/892 (53%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
 gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab]
          Length = 849

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/900 (34%), Positives = 464/900 (51%), Gaps = 114/900 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCA
Sbjct: 23  VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+YDAL RMAQD+S R  L+ G GNFGSVD DPPAA RYTECRL
Sbjct: 83  RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142

Query: 136 QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            + +H  LL  + +  VDF PN+DGS  EP VL AR P +L+NG  GIAVGMATNIP HN
Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEVVDG +A+ID PD+  + L+  I GPDFPTG  I+   GI+ AY TGRGSI +RGV+
Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQGIREAYLTGRGSITLRGVA 262

Query: 255 HIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
             E+         R  ++++E PYQVNKAA LEK+AELV + R+  IADLRDESDR G R
Sbjct: 263 RFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMR 322

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELKR A+   +L QLY+ T LQS F V ++AL   KP++ +L  IL+ F+ FRE  +
Sbjct: 323 VVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGKPQQLSLKQILQHFLQFREATL 382

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  +  L + + +A  + G+ +A+A+L+ V+ ++R +P+  TA+ +L  R         
Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGC------ 436

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q   IL + L RLT L R+ +  E   L   I E   
Sbjct: 437 --------------------TSQQAETILAMPLRRLTTLERERLYQEQAELQARIAELQG 476

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV----REDMVVT--VS 543
           +L  R +LL  +K+EL  +K     PRRT+I+       +   I      ED      ++
Sbjct: 477 LLQDRRKLLNYLKKELRHLKKTFADPRRTQILSASELEAEAAQIPGGEAGEDSRFLLQLT 536

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GYV+R+PL   R++    +         ED +  L  V+   ++L  ++ G  +   +
Sbjct: 537 RKGYVRRLPLPGPRSRSNPAQREL-----GEDTLVSLECVTPEQAILVLTASGRAFTVPI 591

Query: 604 WRLPIGSPQARGKALINILSLNQG---ERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             +P+ +  +RG  L+ +L   +          +     E S     +V  ++ G ++R 
Sbjct: 592 EGIPLSTGSSRGVPLVTLLPNPEPIVAAFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRV 651

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFA 717
            L++ + +++ G   +KL   DE+         +    ++L T  G+ +R     I +  
Sbjct: 652 ALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLDAEQIPLM- 710

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR ++G   + L + +Q++ MA++                                    
Sbjct: 711 GRAAMGSPALRLGRTEQIVGMALLPP---------------------------------- 736

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              +  ++  S  G+ KR    +  I  +   G+ A   S  N+
Sbjct: 737 -------------------QGILVLASRSGYLKRLPLGEIPILEQGKVGVSAFHFS--NK 775

Query: 838 IGALVAV------FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              LV +         + + Q+ ++++   +      EI +  R+  G ++      E+V
Sbjct: 776 GDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSFSPEEIPLQGRSGGGSLLVK---GEQV 832



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 47/257 (18%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++ +++  T+ G VRR               A +    D ++S+E  T E  IL+ T  G
Sbjct: 528 DSRFLLQLTRKGYVRRLP---LPGPRSRSNPAQRELGEDTLVSLECVTPEQAILVLTASG 584

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           +    PI  I +  G +S GV  ++L                                  
Sbjct: 585 RAFTVPIEGIPLSTG-SSRGVPLVTLLPN------------------------------- 612

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                          ++   +       E    E  ++ +S +G  KR +  +  +   S
Sbjct: 613 ----------PEPIVAAFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAE--LVGLS 660

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +G     + + +E+G      P +    ++L +  G ++R+   +I +  RA  G    
Sbjct: 661 QRGAAVLKLKEGDELGWAALWHPGHQGYSVVLATSGGRVLRLDAEQIPLMGRAAMGSPAL 720

Query: 884 STAKDERVVSVERIRES 900
              + E++V +  +   
Sbjct: 721 RLGRTEQIVGMALLPPQ 737


>gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 819

 Score =  644 bits (1662), Expect = 0.0,   Method: Composition-based stats.
 Identities = 306/896 (34%), Positives = 463/896 (51%), Gaps = 116/896 (12%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCAR
Sbjct: 2   IVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTECRL 
Sbjct: 62  VVGDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLA 121

Query: 137 KAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           + +H  LL+ + ++ VDF PN+DGS  EP VL AR P +L+NG  GIAVGMATNIP HNL
Sbjct: 122 ELSHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNL 181

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEVVDG +A+ID+PD+  + L+  I GPDFPTG  IL   GI+ AY TGRGSI +RGV+ 
Sbjct: 182 GEVVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQGIRAAYLTGRGSITLRGVAR 241

Query: 256 IEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            E+         R  +V++E PYQVNKAA +EK+AEL  + RI  IADLRDESDR G RV
Sbjct: 242 FEEIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELKR A+   +L QLY+ T LQS F   ++AL   +P + +L  IL+ F+ FRE  + 
Sbjct: 302 VVELKREANPQAVLQQLYKLTPLQSNFGAILLALVNGEPRQLSLKEILQHFLQFREATLN 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R  +  L + + +A  + G+ +A+A+L+ V+ ++R +P+  TA+ +L  R          
Sbjct: 362 RMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGC------- 414

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q   IL + L RLTGL R+ +  E   L   I+E   +
Sbjct: 415 -------------------TPQQAETILAMPLRRLTGLERERLHQEHAQLQTRIEELQGL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR----EDMVVTV--SH 544
           LS R +LL  +K+EL  +K     PRRT+I+       +   I      E+    +  + 
Sbjct: 456 LSDRRKLLNYLKKELRHLKKTFGDPRRTQILSASELEAEVAQIPSGEETEETHFLLQFTR 515

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            GYV+R+PL   R++    +         ED +  L  V+    +L  ++ G  +   + 
Sbjct: 516 KGYVRRLPLPSRRSRSNPAQREL-----GEDVLVGLECVTLEQEILVLTAGGKAFTLPIA 570

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P+ +  +RG  L+ +L   +      I+     +       +V  ++ G ++R  L++
Sbjct: 571 GIPLSTGSSRGVPLVTLLPNPEP-----IVATFTLDPDPGKASLVVLSRQGRIKRLALAE 625

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNS 721
            + + + G   +KL   DE+        ++    ++L T  G+ +R  +  I +  GR +
Sbjct: 626 LMGLTQRGSTVLKLKEGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLM-GRAA 684

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           +G   + L + ++++ MA+V                                        
Sbjct: 685 MGSPALRLGRTERIVGMALVP--------------------------------------- 705

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                          +  ++  S  G+ KR S  +  I  R   G  A   S       L
Sbjct: 706 --------------SQGILVLASRLGYLKRLSLEEIPILERGQVGAPAFHFSDR--GDVL 749

Query: 842 VAVFPVNDNDQ------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V +  +    +      + ++++   +      EI + SR+  G ++      ERV
Sbjct: 750 VGLVGLPPELERPSHLQLDVITESEQVYSFSPAEIPLQSRSGGGSLLVK---GERV 802



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 19/250 (7%)

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIR 714
           ++++               A +L++    +     T+E   +L  T+ G   R       
Sbjct: 472 HLKKTFGDP---RRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRL------ 522

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEIT 773
               R S           D ++ +  V    +            +      +S  +    
Sbjct: 523 PLPSRRSRSNPAQRELGEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGV 582

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            L         I      +    +  ++ +S +G  KR +  +  +   + +G     + 
Sbjct: 583 PLVTLLPNPEPIVATFTLDPDPGKASLVVLSRQGRIKRLALAE--LMGLTQRGSTVLKLK 640

Query: 834 KINEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           + +E+G        + + Q   ++L +  G ++R+ V +I +  RA  G       + ER
Sbjct: 641 EGDELGW---AALWDPDHQGYSVVLATSGGRVLRLDVQQIPLMGRAAMGSPALRLGRTER 697

Query: 891 VVSVERIRES 900
           +V +  +   
Sbjct: 698 IVGMALVPSQ 707


>gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521]
 gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 971

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 308/941 (32%), Positives = 459/941 (48%), Gaps = 107/941 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  + + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ 
Sbjct: 10  PKDNNIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHMLKAFPDRP 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++Y+A+  +AQD+S RL LIEG GN+GS+DGD  AA RY
Sbjct: 70  YYKSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDGDSAAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNI
Sbjct: 130 TEARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV DG +A IDN DI    LME ++GPD PTG +++G   + +AY TG G +  
Sbjct: 190 PPHNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILIGEKSLLSAYETGEGKVPY 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  ++IEK    R  IV+TE PY+ NK+ +L+ I+E+  +KR       I D+RDESDR 
Sbjct: 250 RAKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITDIRDESDRN 309

Query: 307 GYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIE K      +A+ IL  L++ T LQ   S NMVAL+  KPE   L  I+K +V 
Sbjct: 310 GIRAVIEFKKSVDEDNAEKILKYLFKKTDLQCNISFNMVALSNGKPETMGLKTIIKHYVE 369

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E+V RRTK  L+ A  R H++ G   A+  LDEV+  IR S + + A   L+ +   
Sbjct: 370 HQKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKKNASENLIDK--- 426

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +E+Q +AILEL L RLTGL     + E   L   
Sbjct: 427 -----------------------FGFTELQAQAILELMLYRLTGLEIKVFQKEYAELEKL 463

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVT 541
           IK+   IL+S   LL +IK EL  V D+    RRT I   +    ++ E+ IV E++++T
Sbjct: 464 IKKLEKILASEKELLRVIKTELKEVCDKYSDARRTTIISDDTKSKIDVEELIVVEEVMIT 523

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           VS+ G++KR+PL  Y            +  R+ D++  L   +T  ++L F++ G++Y+ 
Sbjct: 524 VSNDGFIKRIPLKNYNRSNS---DPDDIEYREGDYLKYLISSNTKDNLLIFTNAGYMYQT 580

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +P    + +G+ L  ++  +       I+     ++        F T  G ++ + 
Sbjct: 581 KGINIPELRWKEKGERLDGVIK-SLNLDDEKIVGIISLDNFTPGKGFRFITSGGGIKISG 639

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAG 718
           L  F     +   A+KL   DE+++V     E++   +  TT+        I  +     
Sbjct: 640 LDKFQTS-YTKLQALKLRDTDELINVSLIDLEDESKFLKFTTRNELEFTLEIPEVEDAT- 697

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           RN +  +  +L + D V+ +      +          K        I  D  ++ +   +
Sbjct: 698 RNILPTQLFNLPEDDIVVDVNDSEELEYFELNLGISEKGKLKAYSKIKPDYLKVKTKSTE 757

Query: 779 S-----------------------------------SVEGNISEERCQELKLKEQFILTV 803
                                                    I          +++ I T 
Sbjct: 758 QLLIFTNTGFIYKVPVFMMKNIFTKDMSIDQFIGKIGRNEKIIRIASVASYDEDRCIYTF 817

Query: 804 SEKGFGKRTSSYDF-------RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI--- 853
           ++ G  K+T   ++                          E   LV+V    D D+I   
Sbjct: 818 TKTGMVKKTLLKEYEGEFFKQPCHK------------FKYEFDELVSV----DIDKISLG 861

Query: 854 --ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             I+V+ KG  IR PV  +    +   GV   S   D+ V+
Sbjct: 862 YLIMVTKKGMAIRFPVENVNSMGKIASGVTGISLKDDDEVI 902


>gi|257889769|ref|ZP_05669422.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
 gi|257826129|gb|EEV52755.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,410]
          Length = 822

 Score =  644 bits (1661), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC
           33331]
          Length = 816

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 281/845 (33%), Positives = 412/845 (48%), Gaps = 94/845 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +M
Sbjct: 6   TKTPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  QEPVVL A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I +P  DL+ LM  + GPD PTG  I+G  GIK+AYA
Sbjct: 186 AVGMATNMPPHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGGRIVGLGGIKDAYA 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRG+  IR    IE  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 AGRGTFKIRATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +VV RR+++   K R+R H++ GL +A+ ++DEV+R+IR S N   A+  LM+R 
Sbjct: 366 LDHRFDVVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+QT+ IL+  L RLT   R ++  E + L 
Sbjct: 425 -------------------------FSLSEIQTQYILDTPLRRLTRFDRIELETERDKLS 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            EI E   IL S + L  ++  EL +V  +  T RRT ++E            +  +   
Sbjct: 460 QEIAELTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQVASVPLEVADDPCQ 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R       A     +          D +      +    V   +S G + 
Sbjct: 520 VLLSSTGLLART------ANAEPIEQTEDARRTKHDAIVSAVPATARGDVGAVTSAGRLL 573

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP                +   L+L   E++  +    E       L +   T 
Sbjct: 574 RLSVIDLPQLPDTHAAPNLSGGAPVAEFLTLEADEQLICLTTLDE-----EALGLAIGTL 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +     + L   D I+   +  T E D++  T   Q +R+P ++
Sbjct: 629 QGVVKRVVPDYPAN--KDELEVITLKDGDRIVGATQLRTGEEDLVFITSDAQLLRYPAAS 686

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ G+ L +G  V+S   V  +       +                    
Sbjct: 687 VRP-QGRPAGGMAGVKLTEGATVLSFTAVDPSKDAAVFTVAGSHGTLDDSERTW------ 739

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                                K T    +    R+  G+R    
Sbjct: 740 -------------------------------------KLTPFDQYPRKGRATGGVRCQRF 762

Query: 833 SKINE 837
            K  +
Sbjct: 763 LKGED 767



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 20/177 (11%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           AIV    A     +  +       RL   D  ++       ++ G         L+  EQ
Sbjct: 550 AIVSAVPATARGDVGAVTSAGRLLRLSVIDLPQLPDTHAAPNLSGGAPVAEFLTLEADEQ 609

Query: 799 FI-----------LTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
            I           L + + +G  KR    D+   N+    +         +   +V    
Sbjct: 610 LICLTTLDEEALGLAIGTLQGVVKRV-VPDYPA-NKDELEVITLK-----DGDRIVGATQ 662

Query: 847 V-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +    + ++ ++    L+R P   +R   R   G+      +   V+S   +  S+ 
Sbjct: 663 LRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLTEGATVLSFTAVDPSKD 719



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 89/275 (32%), Gaps = 31/275 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ I+     +        D I+S    T   D+   T  G
Sbjct: 515 DDPCQVLLSSTGLLARTANAEPIEQTEDARRT----KHDAIVSAVPATARGDVGAVTSAG 570

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + +R  +  +      ++      +L+ G  V     +   +          + +     
Sbjct: 571 RLLRLSVIDLPQLPDTHAAP----NLSGGAPVAEFLTLEADEQLICLTTLDEEALGLAIG 626

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQE-------LKLKEQFILTVSEKGFGKRTSSYD 816
            + G  + +      +  E  +   +  +       L+  E+ ++ ++      R  +  
Sbjct: 627 TLQGVVKRVVPDYPANKDELEVITLKDGDRIVGATQLRTGEEDLVFITSDAQLLRYPAAS 686

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL---IRV----P 866
            R   R   G+    +++      +++   V+ +    + +     GTL    R     P
Sbjct: 687 VRPQGRPAGGMAGVKLTEG---ATVLSFTAVDPSKDAAVFTVAGSHGTLDDSERTWKLTP 743

Query: 867 VNEIRIASRATKGVVIFS-TAKDERVVSVE--RIR 898
            ++     RAT GV        ++ +V     R+ 
Sbjct: 744 FDQYPRKGRATGGVRCQRFLKGEDVLVFAWAGRVP 778


>gi|296129539|ref|YP_003636789.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
 gi|296021354|gb|ADG74590.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulomonas flavigena DSM
           20109]
          Length = 826

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/857 (32%), Positives = 404/857 (47%), Gaps = 97/857 (11%)

Query: 1   MTEHIISSDEEEE---KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           M     S D   E   + I  V +T EM+ S+L YA +VI  RA+PD RDGLKPV RRI+
Sbjct: 1   MARRPASPDLPPEDLVERIVDVDVTTEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRII 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  MG+  ++ YVK AR+ GEVMGK HPHG++AIYDA+ R+AQ +SLRL L++G GNF
Sbjct: 61  YQMADMGLRPDRPYVKSARVVGEVMGKLHPHGDSAIYDAMVRLAQPFSLRLPLVDGHGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+D D PAA RYTE R+  AA  +   L +D VDF PNYD   Q+P VL A  PN+LVN
Sbjct: 121 GSLD-DGPAASRYTEARMAPAAVAMTQGLDEDVVDFVPNYDNKLQQPGVLPAAIPNLLVN 179

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATN+  HNL EVV     ++ +PD  L+ LM  + GPD PTG  I+G  G+
Sbjct: 180 GATGIAVGMATNMAPHNLVEVVAAARHLVAHPDATLEDLMRFVPGPDLPTGGKIVGLDGV 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           ++AY TGRG+   R  + +E  +  R+ IVVTE+PY V    ++EKI E V+ K++  I+
Sbjct: 240 RDAYRTGRGAFRTRATARVENVTPRRKGIVVTELPYTVGPEKVIEKIKEGVQSKKLSGIS 299

Query: 298 DLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           D+ D +D + G R+VIE+K G   + +L QLYR+T L+  FSVN VAL   +P    L+ 
Sbjct: 300 DVVDLTDRQHGLRLVIEVKTGFHPEAVLEQLYRHTPLEDSFSVNNVALVDGQPRTLGLVD 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+ +V  R EVV RRT Y L K ++R H++ GL IA+ ++DEV+++IR S + +TAR  
Sbjct: 360 LLRVWVDHRLEVVRRRTSYRLTKRQERLHLVEGLLIAILDIDEVIQVIRTSDDADTARGR 419

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L                               LSE Q   ILELRL RLT   R ++  E
Sbjct: 420 L--------------------------RSVFDLSEPQAEYILELRLRRLTRFSRIELERE 453

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--- 533
            + L  EI     IL+    L  +   E+  V     TPRRT ++E              
Sbjct: 454 RDELTDEIARLQAILADDGLLRTVTSDEMAEVAATYGTPRRTVLLEHAGGAGLAGAAGAP 513

Query: 534 ------------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                               +S  G + R        +        G V    D V    
Sbjct: 514 TSSKGAAAPLEIPDTPCWALLSATGLLARTG------EDVEPVRGDGTVRSRHDVVASAV 567

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             +    +   +S G V +  V  LP   P     +L   L + +   +           
Sbjct: 568 STTARADIGALTSAGRVVRLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVP 627

Query: 642 SWNN-LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
             ++   +   T  G V+R    D          A+ L   D+++       E++++L +
Sbjct: 628 LGDDAPPLALGTAQGVVKRVAAGDVPANR-DAWEAISLKDGDQVVGAALARDEDELVLVS 686

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                + FP + +R   GR++ G+ GI LA G +V++  +V   +      +        
Sbjct: 687 SDSSLLHFPGAQVRP-QGRSAGGMAGIKLAAGARVVAFGVVRAGEDAVVVTVSGSSSALP 745

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                                                      ++ G  K T    +   
Sbjct: 746 G------------------------------------------TQTGAAKVTPFSAYPGK 763

Query: 821 NRSGKGIRATDVSKINE 837
            R+  G+R+    K  +
Sbjct: 764 GRATGGVRSHRFLKGED 780



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 69/212 (32%), Gaps = 20/212 (9%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM-------AIVLHADADYDE 750
           L +  G   R     +    G  +  VR    ++ D V S         I     A    
Sbjct: 533 LLSATGLLARTGE-DVEPVRGDGT--VR----SRHDVVASAVSTTARADIGALTSAGRVV 585

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  ++  S               +    ++E   S      L      +   + +G  K
Sbjct: 586 RLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVPLGDDAPPLALGTAQGVVK 645

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           R ++ D    NR      A  +        +V      D D+++LVS   +L+  P  ++
Sbjct: 646 RVAAGDVPA-NRDA--WEAISLKDG---DQVVGAALARDEDELVLVSSDSSLLHFPGAQV 699

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           R   R+  G+     A   RVV+   +R  E 
Sbjct: 700 RPQGRSAGGMAGIKLAAGARVVAFGVVRAGED 731



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 38/223 (17%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRN-----SVGV---RGISLAKGDQVISMAIVLHADA 746
           DI   T  G+ VR  +  +      +     S G+     ++L KG+ V+++  +     
Sbjct: 574 DIGALTSAGRVVRLSVLELPSLPPTDGPPSLSGGLPVGEAVTLEKGESVVALVPL----G 629

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D    +         +R+ +GD           S++           + +++ +L  S+ 
Sbjct: 630 DDAPPLALGTAQGVVKRVAAGDVPANRDAWEAISLKDGDQVVGAALARDEDELVLVSSD- 688

Query: 807 GFGKRTSSYDF-----RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI-------- 853
                +S   F     R   RS  G+    ++       +VA   V   +          
Sbjct: 689 -----SSLLHFPGAQVRPQGRSAGGMAGIKLAAG---ARVVAFGVVRAGEDAVVVTVSGS 740

Query: 854 ---ILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVV 892
              +  +  G     P +      RAT GV        ++ ++
Sbjct: 741 SSALPGTQTGAAKVTPFSAYPGKGRATGGVRSHRFLKGEDALI 783


>gi|314938044|ref|ZP_07845354.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
 gi|314941970|ref|ZP_07848831.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|314951795|ref|ZP_07854834.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|314991798|ref|ZP_07857256.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|314995839|ref|ZP_07860926.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313589943|gb|EFR68788.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a01]
 gi|313593609|gb|EFR72454.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133B]
 gi|313596074|gb|EFR74919.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133A]
 gi|313599222|gb|EFR78067.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133C]
 gi|313642619|gb|EFS07199.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0133a04]
          Length = 816

 Score =  644 bits (1660), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
 gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317]
 gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082]
          Length = 816

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
 gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000]
          Length = 818

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/897 (32%), Positives = 433/897 (48%), Gaps = 106/897 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +      D+  E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M 
Sbjct: 5   STKTPPPDDSYEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE R+ +A   + + + +DTVDF PNYDG  +EPV L A +PN+LVNG  
Sbjct: 125 NDDPPAAMRYTESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGAS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVV     +I  P+ DLDALM+ + GPD PTG  I+G  GI++A
Sbjct: 185 GIAVGMATNMPPHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLPGIRDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YETGRGSFKIRATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR+++   K RDR H++ GL  A+ ++DEV+R+IR S N   A++ LM+
Sbjct: 365 VYLDHRFNVVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLME 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS++QT+ IL+  L RLT   R ++  E + 
Sbjct: 425 R--------------------------FSLSDIQTQYILDTPLRRLTKFDRIELEAEKDR 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI+E   IL S + L  ++  EL +V  +    RRT ++E          +    + 
Sbjct: 459 LNEEIEELTRILDSDAELRKLVSAELAAVAKKFGNDRRTLLLESAGTPAAVVPLQVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A          +V             +    +   +S G 
Sbjct: 519 CRVLLSATGLLARTVNDAPLADDGKRVKHDVIVSSA--------PATARGEIGVVTSAGR 570

Query: 598 VYKEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP    Q           +   +SL   E++  +    E     ++  +   
Sbjct: 571 LLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVSLEDDEQVVCLTTLDE-----SSPGLALG 625

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           T+ G V+R          +     + L   D I+ +VE  T + D++  T   Q +R+P 
Sbjct: 626 TEQGVVKRVVPDYPSN--KEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYPA 683

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +R   GR + G+ G+ + +G +VI    V  A       +   +         +    
Sbjct: 684 AQVRP-QGRPAGGMAGVKVTEGAKVICFTAVDPAVDAMVFTVAGSRGTLDDSVQTT---- 738

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K T    +    R+  G+R  
Sbjct: 739 --------------------------------------AKLTPFDQYPRKGRATGGVRCQ 760

Query: 831 DVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
              K  +  +L      P             GT + +P  + R   R   GV +  T
Sbjct: 761 RFLKGEDCLSLAWAGPTPARAAQ------KNGTAVSLPEADPR---RDGSGVSLQRT 808



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 20/184 (10%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             G +V    IV  A A     I  +       RL   D  ++       ++ G      
Sbjct: 540 DDGKRVKHDVIVSSAPATARGEIGVVTSAGRLLRLNVVDLPQLPEQMPTPNLSGGAPVAE 599

Query: 790 CQELKLKEQFI-LTV-----------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              L+  EQ + LT            +E+G  KR    D+  SN+    +         E
Sbjct: 600 FVSLEDDEQVVCLTTLDESSPGLALGTEQGVVKRV-VPDYP-SNKEELEVITLK-----E 652

Query: 838 IGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +V    +   D+ ++ ++D   L+R P  ++R   R   G+      +  +V+    
Sbjct: 653 GDRIVGAVELRTGDEDLVFITDDAQLLRYPAAQVRPQGRPAGGMAGVKVTEGAKVICFTA 712

Query: 897 IRES 900
           +  +
Sbjct: 713 VDPA 716



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 87/272 (31%), Gaps = 33/272 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R      +  +            D I+S    T   +I + T  G
Sbjct: 516 DDPCRVLLSATGLLARTVNDAPLADDGKRV------KHDVIVSSAPATARGEIGVVTSAG 569

Query: 704 QCVRFPISAIRV----FAGRNSVG---VR-GISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +          N  G   V   +SL   +QV+ +  +  +          +
Sbjct: 570 RLLRLNVVDLPQLPEQMPTPNLSGGAPVAEFVSLEDDEQVVCLTTLDES-----SPGLAL 624

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++         EL+  ++ ++ +++     R  + 
Sbjct: 625 GTEQGVVKRVVPDYPSNKEELEVITLKEGDRIVGAVELRTGDEDLVFITDDAQLLRYPAA 684

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IR 864
             R   R   G+    V++      ++    V+     ++ +    +GTL          
Sbjct: 685 QVRPQGRPAGGMAGVKVTEG---AKVICFTAVDPAVDAMVFTVAGSRGTLDDSVQTTAKL 741

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P ++     RAT GV      K E  +S+  
Sbjct: 742 TPFDQYPRKGRATGGVRCQRFLKGEDCLSLAW 773


>gi|325696554|gb|EGD38444.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK160]
          Length = 816

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/902 (32%), Positives = 464/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNAFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+++++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKDIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TIEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
                      +  ++++G  KR +  D  +++R+ +G++     K      + A  PV 
Sbjct: 704 -----------LYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPH-RVFAAGPVY 751

Query: 848 --------------NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V 
Sbjct: 752 GEAVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S I     R             D++I ++                        
Sbjct: 516 SPRSFSASTIEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|294617488|ref|ZP_06697119.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
 gi|291596228|gb|EFF27490.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1679]
          Length = 816

 Score =  643 bits (1659), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYKAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIVTIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 756 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 806


>gi|257878032|ref|ZP_05657685.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257892294|ref|ZP_05671947.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260559082|ref|ZP_05831268.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
 gi|257812260|gb|EEV41018.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,230,933]
 gi|257828673|gb|EEV55280.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,408]
 gi|260074839|gb|EEW63155.1| DNA topoisomerase IV subunit A [Enterococcus faecium C68]
          Length = 817

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
 gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502]
          Length = 817

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 291/892 (32%), Positives = 472/892 (52%), Gaps = 95/892 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 3   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 183 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 243 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 303 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 363 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 411 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 457 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 517 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 572 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 629

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 630 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 688

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 689 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 714

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ V+++G  KR  + +   ++R+ +G+      K N    ++
Sbjct: 715 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKNPH-RII 756

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     + +I L++ KG  + +   +  I  R + G       K   V+ V
Sbjct: 757 YMSE-GRSKEITLMNQKGQQLTIDPTDFPIGDRTSNGSFAMDEKKGGEVIEV 807


>gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
 gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405]
          Length = 835

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 284/888 (31%), Positives = 449/888 (50%), Gaps = 80/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 20  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 79

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 80  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 139

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 140 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 199

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 200 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 259

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 260 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 319

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 320 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 380 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENL---------------- 423

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  SL  +I     I+  
Sbjct: 424 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGD 473

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 474 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 533

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++ G      +  L     
Sbjct: 534 SPRSFNAS-----TVEEVGKRDDDELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKW 588

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL---SDFIQI 668
           +  G+ L   L+  + E     + F E    +  +    AT+ G ++R +    S +   
Sbjct: 589 KDIGEHLSQTLTNFEQEEE---ILFAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 645

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL  +D+ +         DI++ TK G  +RF +  +    G  + GV+ I+
Sbjct: 646 RSKSTKYAKLKDQDDRIVAVAPVVLEDIMIITKNGYGLRFNVEEV-PVVGAKAAGVKAIN 704

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GDQV +             +   +K M      ++   +    +  +   + +   +
Sbjct: 705 LKDGDQVAAAFKSTTPSMYILTQRGSLKRMLQDDIPVTSRAKRGLQVLRELKNKPHRVFK 764

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  F L          TS  +                              V 
Sbjct: 765 AGPVFTDQGDFDLF---------TSQEE------------------------------VA 785

Query: 849 DNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + DQI+ ++   G +  + + ++ I+ R + G  +  T  D+ V S  
Sbjct: 786 EQDQILQITSTTGQVTEIDLTQLSISERTSNGSFVNDTISDQEVFSAT 833


>gi|325689657|gb|EGD31661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK115]
          Length = 816

 Score =  643 bits (1658), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/902 (31%), Positives = 463/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEGELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  ++V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANTIEIDTASLIVEEETYISVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSQAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
                      +  ++++G  KR +  D  +++R+ +G++     K      + A  PV 
Sbjct: 704 -----------LYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH-RVFAAGPVY 751

Query: 848 --------------NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KG    + + ++ ++ R + G  I  T  DE V 
Sbjct: 752 GEAVDFDLFTTEAEASEEQILQVLSNKGAAYEINLADLSLSERTSNGSFISDTISDEEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANTIEIDTASLIVEEETYISVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFVSQAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 781

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 297/892 (33%), Positives = 448/892 (50%), Gaps = 130/892 (14%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SY+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+   K + K AR+ GEV+GK
Sbjct: 12  VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ A+YDAL RMAQD+S+R  LI GQGN+GSVDGDPPA  RYTE +L K A  LL+
Sbjct: 72  FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PN+D S  EP VL +++PN+L NG  GIAVG+AT+IP HNL EV    V 
Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  NP++  + ++EI++GPDFPTG VI     IK  Y TGRG + ++  +H+EK  G RE
Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVIENYKDIKEIYETGRGIVQVKAKAHVEKVQGGRE 251

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+V+EIPYQVNKA +++KIA+ VR  R+ +I+D+RDESD+ G R+VIELKR A  + +L
Sbjct: 252 QIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKREAKGEKVL 311

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +L++YT L+  F VN+V L   +P+   +  +L+ F+  R  +++RRT++ L KA DR 
Sbjct: 312 KKLFKYTQLRKGFPVNLVVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKKAEDRL 371

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           HV+ GL IA+ NLDEV+  IR S + + AR  L  R                        
Sbjct: 372 HVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQAR------------------------ 407

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               L+E Q +A+L+LRL RLT L RD +R E   L  +I+    ++ S    + I  +E
Sbjct: 408 --FGLTERQAQAVLDLRLHRLTSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEE 465

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
             ++  +   PRRT I      +E+         VV V   G V                
Sbjct: 466 TENLVKKFGDPRRTFIEGIEEKIEEGSL------VVAVLENGKVM--------------- 504

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                +   E  V D+  V     +   S+ G VY     +   GS              
Sbjct: 505 -PVENMPEGESPVVDILDVPFTEGLFLVSNRGRVYWLAGSQALQGSKVNF---------- 553

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
               + +                ++ AT++G +++  L +F      G   +KL   DE+
Sbjct: 554 ----KESEEYIVGAFIRERFADRLLLATRNGMIKKIPLVEFE-YKAQGMRIIKLAEDDEV 608

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           + +      +DIL+ T+ G+  RF I  I       + G +GI +   D+V    ++   
Sbjct: 609 VGIAQSIDMSDILMFTRRGKVARFSIREIPAAT-PGTKGAQGIKVEDNDEVAGARVIRED 667

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                                                               + +I+ V+
Sbjct: 668 ----------------------------------------------------QPYIIVVT 675

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI- 863
             G  KR    +  + NR  KG+        +    LV + P+ D  ++++ +  G    
Sbjct: 676 VDGKVKRIYQQEIGVRNRGVKGVNVL----GSARERLVDLLPIKDELELLITTKLGRAFY 731

Query: 864 -RVPVNEIRIASRATKGVVIF----STAKDERVVSVERIRESEIVDEAESTE 910
            R+   +I ++ R      +        +++ +  +    E +  +E ES++
Sbjct: 732 DRIRAEDIPLSKRD----RLAKERWKLEEEDEIRRIVIKSEGKGYEEGESSD 779


>gi|116333452|ref|YP_794979.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
 gi|116098799|gb|ABJ63948.1| DNA topoisomerase IV subunit A [Lactobacillus brevis ATCC 367]
          Length = 815

 Score =  642 bits (1656), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/887 (32%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + I  +++ + M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   SEGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW +R  L+E  GN GS+DGDP AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD  + ++ +P   L+ LM  ++GPDFPTG +I G+ GI  AY TGRG IV+
Sbjct: 182 PPHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G++ QI VTEIPY+VNKA +++KI E+   K++  +A++RDE+DR G R+
Sbjct: 242 RSKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELKR A A  +LN L++ T LQ  ++ NMVA+N  +PE   L  IL A++  +  V+ 
Sbjct: 302 AIELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y L KA DR H++VGL  A++ LD+V++ IR S +   AR  L++           
Sbjct: 362 KRTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT      +  E   L  EI++   I
Sbjct: 411 ---------------AYDFSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L+    L  +++QEL +V  +   PRRT I   + D  ++    +  ED+VV VSH GY+
Sbjct: 456 LAEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A            ++D D+   +  +ST   ++ F+S G +    V  +  
Sbjct: 516 KRSGVRSYTASDPTDN-----GLKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   + L   E I   +     ++       + AT  G +++   +D    
Sbjct: 571 VKWKETGEHISQTIGLAADEEI---VATFAFKTLKEPGRFLIATSDGYIKQTAFADLTPG 627

Query: 669 NRSGKIAMKLDS----RDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 A   +        +++V+  T+  E  ILL +K G  +R+P+  + V   R + 
Sbjct: 628 RTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGARTT- 686

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR + L   D+V+++A+V   +                                     
Sbjct: 687 GVRSMDLRDDDEVVNLALVTDNET------------------------------------ 710

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I  ++++G  KR +  +  +++R+ +G+      K +    +V
Sbjct: 711 -----------------IALITQRGAFKRLAMKELSVTSRARRGVIVLRELKRDPH-RIV 752

Query: 843 AVFPVNDND---QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
               +   +   +I+  + +     V   +  ++ R + G  +  T 
Sbjct: 753 DFMTIPAGNPPLEIM--TSRERTHDVMPTDHPLSGRYSNGSFVIDTD 797



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM- 738
              +I +  T   E+ ++L +  G   R   S +R +    +       L  GD  I M 
Sbjct: 490 EDLKIKTTVTVADEDVVVLVSHDGYLKR---SGVRSY---TASDPTDNGLKDGDYPIFMQ 543

Query: 739 --AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
             + + H      +     + +     +   +T E  S     + +  I      +   +
Sbjct: 544 KLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATFAFKTLKE 603

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854
               L  +  G+ K+T+  D     R+ K   A           +VAV  + +     I+
Sbjct: 604 PGRFLIATSDGYIKQTAFADLTP-GRTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGIL 662

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           L+S  G  +R PV+E+ +    T GV       D+ VV++  + ++E +
Sbjct: 663 LISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLALVTDNETI 711


>gi|325694457|gb|EGD36366.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK150]
          Length = 816

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/902 (31%), Positives = 462/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
                      +  ++++G  KR +  D  +++R+ +G++     K      +    PV 
Sbjct: 704 -----------LYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPH-RVFVAGPVY 751

Query: 848 --------------NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V 
Sbjct: 752 GEAVDFDLFTTEAEASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 77/558 (13%), Positives = 166/558 (29%), Gaps = 37/558 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIENLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I     +   
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIILARSRFDKAKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +     +              V  T+ G ++R   
Sbjct: 464 KRELRDVKKKFGNP------RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          M     D ++ V        +L+ T LG  +  P+  +     +   
Sbjct: 518 RSFSASTLEE---MGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIG 574

Query: 723 GV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               + I +    ++VI   ++   +         +  +    R          S     
Sbjct: 575 EHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKF 634

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +   N  +       +K   ++ V++ G+  R +  +  +      G++A ++ K     
Sbjct: 635 AKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKK----D 690

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
            ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V V    
Sbjct: 691 DVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFVAGPV 750

Query: 899 ESEIVD------EAESTE 910
             E VD      EAE++E
Sbjct: 751 YGEAVDFDLFTTEAEASE 768


>gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
 gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043]
          Length = 818

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 279/850 (32%), Positives = 408/850 (48%), Gaps = 91/850 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
                E+ E+ I  + + +EMQN++L Y+ +VI  RA+PD RDGLKPV RRIL+G  ++G
Sbjct: 7   TTPPPEDFEEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELG 66

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  ++ +VK  RI GEVMGKYHPHG+ AIYDAL RMAQ ++LRL LI+G GNFGS+D D 
Sbjct: 67  VRPDRGHVKSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DG 125

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL ++A  ++  L ++TVDF PNYD +  +P VL A +PN+LVNG  GIAV
Sbjct: 126 PAAARYTEARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAV 185

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNL EV+     +I NP   LD LM+ + GPD P G  I+G  GI++AY TG
Sbjct: 186 GMATNMAPHNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGGRIVGLEGIRDAYLTG 245

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS   R  + IE  +  R+ IVVTE+PY V    ++EKI +LV+ K++  I+DL+D SD
Sbjct: 246 RGSFRTRATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLSD 305

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G + D +L QLYR T ++  F +N VAL   +P    L  +L+ +V 
Sbjct: 306 RGHGLRLVIEVKNGFNPDAVLEQLYRLTPMEENFGINNVALVEGQPRTLGLKQLLQVYVD 365

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR +VV RRT++ L K  +R H++ GL IA+ ++DEV+++IR S +  TA+  LM     
Sbjct: 366 FRTDVVRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLM----- 420

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   IL+L+L RLT   R ++ +E + L  +
Sbjct: 421 ---------------------DVFDLSDPQATYILDLQLRRLTRFSRIELESEKSELERQ 459

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-----IVREDM 538
           I+E   +L S   LL ++  EL  V  +  TPRRT ++E               I  +  
Sbjct: 460 IEELRALLESDRLLLKLVSTELAEVAKKHGTPRRTVLLESSGQARPTTTATPLEITDDPC 519

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G + R                +       D +      +    +   ++ G +
Sbjct: 520 WVLLSSTGLLARTVGPE--------PVTAEGSRSRHDALVGAVRTTARGELGLVTTSGRM 571

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVVFATKHGNV 657
            +     LP   P     +L     L     +     P            V   T  G V
Sbjct: 572 VRLSALELPTLPPTNGAPSLGGGAPLAAYVDLAKDEEPLTIVPIGAEAPVVALGTASGVV 631

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVF 716
           +R           +    + L   D ++      +++ D++  T   Q +RF    +R  
Sbjct: 632 KRVSPD---TPKGTDWSLISLKDGDRVVGAAVADRDDLDLVFITSDAQLLRFAAKTVRP- 687

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR++ G+ G+ LA G   +   +V  +                                
Sbjct: 688 QGRSAGGMAGVKLAAGASAVFFGVVDPSSDGVVVTSAGSSGALPG--------------- 732

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                      +E G  K T   ++    R+  G+R     K  
Sbjct: 733 ---------------------------TEAGTLKVTPYSEYPPKGRATGGVRCHRFLKGE 765

Query: 837 EIGALVAVFP 846
           +   LV  F 
Sbjct: 766 DT--LVVAFA 773



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/154 (10%), Positives = 44/154 (28%), Gaps = 9/154 (5%)

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
            R+  ++  +      +        L     +  +        +  +   +   +  G  
Sbjct: 572 VRLSALELPTLPPTNGAPSLGGGAPLAAYVDLAKDEEPLTIVPIGAEAPVVALGTASGVV 631

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVN 868
           KR S      + +         +  + +   +V     + +D  ++ ++    L+R    
Sbjct: 632 KRVS----PDTPKGT----DWSLISLKDGDRVVGAAVADRDDLDLVFITSDAQLLRFAAK 683

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +R   R+  G+     A     V    +  S  
Sbjct: 684 TVRPQGRSAGGMAGVKLAAGASAVFFGVVDPSSD 717


>gi|253731988|ref|ZP_04866153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724398|gb|EES93127.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 800

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGVDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|238767642|dbj|BAH66656.1| DNA topoisomerase IV subunit A [Lactobacillus brevis]
          Length = 815

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/887 (32%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E + I  +++ + M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   SEGQKIQELTLEEVMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW +R  L+E  GN GS+DGDP AA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDSSIYEALTRMSQDWKVREPLVEMHGNNGSMDGDPAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLAGEMLRDIDKDTVEMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD  + ++ +P   L+ LM  ++GPDFPTG +I G+ GI  AY TGRG IV+
Sbjct: 182 PPHNLGEVVDALIYLLSHPKATLEELMSFVQGPDFPTGGIIQGKDGIVKAYETGRGRIVV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G++ QI VTEIPY+VNKA +++KI E+   K++  +A++RDE+DR G R+
Sbjct: 242 RSKTAIEPLRGNKSQITVTEIPYEVNKAQLVKKIDEIRLNKKVEGLAEVRDETDRDGLRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELKR A A  +LN L++ T LQ  ++ NMVA+N  +PE   L  IL A++  +  V+ 
Sbjct: 302 AIELKRDADAQGVLNYLFKNTELQITYNFNMVAINHQRPEHVGLKTILSAYLEHQRNVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y L KA DR H++VGL  A++ LD+V++ IR S +   AR  L++           
Sbjct: 362 KRTEYNLQKALDRQHIVVGLIKALSILDQVIKTIRASKDRRDARDNLVE----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT      +  E   L  EI++   I
Sbjct: 411 ---------------AYDFSEKQADAIVALQLYRLTNTDVTQLEAESAKLSAEIEQDHKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L+    L  +++QEL +V  +   PRRT I   + D  ++    +  ED+VV VSH GY+
Sbjct: 456 LAEPKTLNSVLRQELKAVAKDYRNPRRTEIQNEIEDLKIKTTVTVADEDVVVLVSHDGYL 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  +  Y A            ++D D+   +  +ST   ++ F+S G +    V  +  
Sbjct: 516 KRSGVRSYTASDPTDN-----GLKDGDYPIFMQKLSTLNHLMMFTSKGNLIYRPVHEISD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   + L   E I   +     ++       + AT  G +++   +D    
Sbjct: 571 VKWKETGEHISQTIGLAADEEI---VATFAFKTLKEPGRFLIATSDGYIKQTAFADLTPG 627

Query: 669 NRSGKIAMKLDS----RDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 A   +        +++V+  T+  E  ILL +K G  +R+P+  + V   R + 
Sbjct: 628 RTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGILLISKNGYALRYPVDEVSVNGARTT- 686

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVR + L   D+V+++A+V                                         
Sbjct: 687 GVRSMDLRDDDEVVNLALVTDN-------------------------------------- 708

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                          + I  ++++G  KR +  +  +++R+ +G+      K +    +V
Sbjct: 709 ---------------KTIALITQRGAFKRLAMKELSVTSRARRGVIVLRELKRDPH-RIV 752

Query: 843 AVFPVNDND---QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
               +   +   +I+  + +     V   +  ++ R + G  +  T 
Sbjct: 753 DFMTIPAGNPPLEIM--TSRERTHDVMPTDHPLSGRYSNGSFVIDTD 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 83/226 (36%), Gaps = 12/226 (5%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM- 738
              +I +  T   E+ ++L +  G   R   S +R +    +       L  GD  I M 
Sbjct: 490 EDLKIKTTVTVADEDVVVLVSHDGYLKR---SGVRSY---TASDPTDNGLKDGDYPIFMQ 543

Query: 739 --AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
             + + H      +     + +     +   +T E  S     + +  I      +   +
Sbjct: 544 KLSTLNHLMMFTSKGNLIYRPVHEISDVKWKETGEHISQTIGLAADEEIVATFAFKTLKE 603

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQII 854
               L  +  G+ K+T+  D     R+ K   A           +VAV  + +     I+
Sbjct: 604 PGRFLIATSDGYIKQTAFADLTP-GRTYKSRAAVYEKLKTAEARVVAVKYLTEPVEQGIL 662

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L+S  G  +R PV+E+ +    T GV       D+ VV++  + ++
Sbjct: 663 LISKNGYALRYPVDEVSVNGARTTGVRSMDLRDDDEVVNLALVTDN 708


>gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
 gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC
           15579]
          Length = 956

 Score =  642 bits (1655), Expect = 0.0,   Method: Composition-based stats.
 Identities = 294/939 (31%), Positives = 467/939 (49%), Gaps = 87/939 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I +  + + M  +YL YA+ V   RA+PD+RDGLKPV RRI++G   +    +K 
Sbjct: 8   PKDNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++YDA+  +AQ ++ R+ +I+G GN+GS DGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ D+ KD V+   NY  S +EP VL A++PN+LVNG  GIAVG+ATNI
Sbjct: 128 TEARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DG +A ID  +I    L+  I+GPD PTG VI+G+  + +AY TG G + +
Sbjct: 188 PPHNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVIIGKNSMLSAYETGEGRVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  IV+TE P++ NKA +L+ I+E+  +K+      +I D+RDESDR 
Sbjct: 248 RAKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRN 307

Query: 307 GYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIE K+  + DV+      LY+ T LQS  S NMVAL   KP+   L  +LK +V 
Sbjct: 308 GTRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVALAEGKPKTLGLKAMLKYYVE 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++EVV R+TK  L  A  R H++ G   A+  +DE+++ IR S + + AR  LM++   
Sbjct: 368 HQKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +++Q  AILEL L +LTGL       E   L   
Sbjct: 425 -----------------------FSFTDIQAEAILELMLYKLTGLEIVAFEKEYKELEKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           I +   ILSS   LL +IK+EL+ VK+  +  RRT I+E      ++ E+ IV ED+VVT
Sbjct: 462 INKLKKILSSEKELLKVIKKELIEVKETYNDKRRTSIIEDDEKAKIDIEEIIVEEDVVVT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ G+ KR+ L  Y    R       +  R+ DF   L   +T  ++   +  G +Y+ 
Sbjct: 522 LSNEGFTKRIALKSY---NRSSANVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQI 578

Query: 602 KVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           KV  +P    + +G  L  I+  ++  E I       +  +  +   ++F T  G +++ 
Sbjct: 579 KVINIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIDDFTAQKD---MLFITDSGYMKKT 635

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFA 717
            L  F   N +  +A+KL   + +L  +      +E    + T+ G        ++    
Sbjct: 636 TLDKF-NTNYTKIMALKLKKEESLLKADLVDRTREEKFFNIKTQKGLSFNIEEPSLEAVD 694

Query: 718 GRNSVGVRGISLAKGDQV-----------------IS----------------MAIVLHA 744
            RN VG +   +   D +                 IS                +++   +
Sbjct: 695 -RNIVGYKLFDILPNDSIKQVDFCDNYEYKSFYVNISKDGLITISDLKENKSHVSLFTDS 753

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                      K       ++    E+  ++   +  + ++          ++  I  +S
Sbjct: 754 SKTIVLFDSEGKAYYIPAFMLQNIKEKGINISAFTGDKISLLNAISTFRFEEDISIYFIS 813

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVSDKGTL 862
           +KG  KRT   + +I      G  A      ++   LV++      ++  II++++K  +
Sbjct: 814 KKGLIKRTVLSELKIE-----GNSAQVYKFKDKGDELVSILIKEHGEEKNIIIITEKAMV 868

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           IR     +    +   GV   S    ++V+    I E++
Sbjct: 869 IRFKSEAVNPMGKMASGVTGISLKDLDKVILALIIDEND 907



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/415 (12%), Positives = 124/415 (29%), Gaps = 22/415 (5%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
             + F          R+   +     R        I      + + ++    N    +  
Sbjct: 523 SNEGFTKRIALKSYNRSSANVEDIEYREGDFNRFLIQCN-TKDTLCLVTKEGNMYQIKVI 581

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +           L ++I     +        + +   +   ++     +G  +    ++
Sbjct: 582 NIPEFKWKEKGVKLDEIIKTIDLSETIIEAFSIDDFTAQK--DMLFITDSGYMKKTTLDK 639

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR- 535
            N+   +I     +    S L   +       K   +   +  +   + +   E      
Sbjct: 640 FNTNYTKIMALK-LKKEESLLKADLVDRTREEKF-FNIKTQKGLSFNIEEPSLEAVDRNI 697

Query: 536 --EDMVVTVSHL--GYVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
               +   + +     V       Y++        G   +    E+         +  ++
Sbjct: 698 VGYKLFDILPNDSIKQVDFCDNYEYKSFYVNISKDGLITISDLKENKSHVSLFTDSSKTI 757

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F S G  Y    + L     +    +              +++          ++ + 
Sbjct: 758 VLFDSEGKAYYIPAFMLQNIKEKGINISAFT-------GDKISLLNAISTFRFEEDISIY 810

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVR 707
           F +K G ++R  LS+      S ++    D  DE++S+      +E +I++ T+    +R
Sbjct: 811 FISKKGLIKRTVLSELKIEGNSAQVYKFKDKGDELVSILIKEHGEEKNIIIITEKAMVIR 870

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           F   A+    G+ + GV GISL   D+VI   I+   D    +     K      
Sbjct: 871 FKSEAVNPM-GKMASGVTGISLKDLDKVILALIIDENDTGKIKIKTKSKDKGTVE 924


>gi|323351526|ref|ZP_08087180.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
 gi|322122012|gb|EFX93738.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           VMC66]
          Length = 810

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/897 (32%), Positives = 461/897 (51%), Gaps = 111/897 (12%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEM 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  + IEK
Sbjct: 181 IDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSRTEIEK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A
Sbjct: 241 LKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+++   
Sbjct: 301 NTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARSRFDKA 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                     
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------------- 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   +E Q  AI+ L+L RLT      +  E   L  +I     I+     + 
Sbjct: 400 -----KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR     +
Sbjct: 455 NLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A          +  RD+D +  +    T   +L F+SLG V    V  L     +  G+
Sbjct: 515 SAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIGE 569

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L   +S    +         +   S+       ATK G ++R +  +F         ++
Sbjct: 570 HLSQTISNFDTKEEVIYTELLD---SFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSL 626

Query: 677 ---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
              KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+L K D
Sbjct: 627 KFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAINLKKDD 685

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V++ A + + D+                                               
Sbjct: 686 -VLAAAFIANTDS----------------------------------------------- 697

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN----- 848
                 +  ++++G  KR +  D  +++R+ +G++     K      + +  PV      
Sbjct: 698 ------LYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPH-RVFSAGPVFGEAVD 750

Query: 849 ----------DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                       DQI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 751 FDLFTTEAEASEDQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 807



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 452 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 509

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 510 SPRSFSASTLEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 558

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 559 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 618

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 619 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 672

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 673 AAGVKAINLKKDD-VLAAAFIANTD 696


>gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
 gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074]
          Length = 815

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/844 (33%), Positives = 417/844 (49%), Gaps = 94/844 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI++ M +M
Sbjct: 6   TKTPPPDDFEERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRRDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + ++TVDF PNYDG  QEPV L A +PN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEVV     +I +P  DL+ LM  + GPD PTG  I+G  G+++AYA
Sbjct: 186 AVGMATNMPPHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIVGLGGVRDAYA 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 TGRGTFKIRATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDREHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   AR  LM+R 
Sbjct: 366 LDHRFTVVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS++QT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FSLSDIQTQYILDTPLRRLTRFDRIELESERDRLT 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-DMVV 540
            EI+E   IL S + L  ++  EL +V  +  T RRT ++E           V +    V
Sbjct: 460 AEIEELSRILDSDAELRKLVSSELAAVSKKYGTDRRTVLLESSGAAAAVPLQVEDTPCRV 519

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G + R   +   A+         +              +    V   +S G + +
Sbjct: 520 LLSSTGLLARTADATPLAEAPKRVKHDLI--------VSAVAATARGEVGAVTSAGRLLR 571

Query: 601 EKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            +V  LP                +   L+L   ER+  +    E     ++  +   T  
Sbjct: 572 LQVIDLPQLPGTDTAPSLSGGAPVAEFLTLEADERLVCLTTLDE-----SSPGLALGTAQ 626

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAI 713
           G V+R          +     + L   D I+   E  T E D++  T     +RFP S +
Sbjct: 627 GVVKRVVPDYPAH--KEELEVISLRDGDRIVGATELRTGEEDLVFITDEAHLLRFPASVV 684

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + G+ G+ L +G +V+S   V  A       +   +         +       
Sbjct: 685 RP-QGRPAGGMAGVKLGEGARVVSFTAVDPAVDAVVFTVAGSRGTLDDSVQTT------- 736

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                               K T    +    R+  G+R     
Sbjct: 737 -----------------------------------AKVTPFDQYPRKGRATGGVRCQRFL 761

Query: 834 KINE 837
           K  +
Sbjct: 762 KGED 765



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 56/178 (31%), Gaps = 15/178 (8%)

Query: 731 KGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           K D ++S         +     A    R+  +          +        +    ++E 
Sbjct: 544 KHDLIVSAVAATARGEVGAVTSAGRLLRLQVIDLPQLPGTDTAPSLSGGAPVAEFLTLEA 603

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +        L      +   + +G  KR    D+             +V  + +   +V 
Sbjct: 604 DERLVCLTTLDESSPGLALGTAQGVVKRV-VPDYPAHK------EELEVISLRDGDRIVG 656

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ ++D+  L+R P + +R   R   G+      +  RVVS   +  +
Sbjct: 657 ATELRTGEEDLVFITDEAHLLRFPASVVRPQGRPAGGMAGVKLGEGARVVSFTAVDPA 714



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +  G + R   +  +               D I+S    T   ++   T  G
Sbjct: 514 DTPCRVLLSSTGLLARTADATPLAEAPKRV------KHDLIVSAVAATARGEVGAVTSAG 567

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + +R  +  +    G ++      SL+ G  V     +   +                  
Sbjct: 568 RLLRLQVIDLPQLPGTDTAP----SLSGGAPVAEFLTLEADERLVCLTTLDESSPGLALG 623

Query: 764 LISGDTEEITSLKNDSSVEGNISEER-------CQELKLKEQFILTVSEKGFGKRTSSYD 816
              G  + +         E  +   R         EL+  E+ ++ ++++    R  +  
Sbjct: 624 TAQGVVKRVVPDYPAHKEELEVISLRDGDRIVGATELRTGEEDLVFITDEAHLLRFPASV 683

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IRV 865
            R   R   G+    + +      +V+   V+     ++ +    +GTL           
Sbjct: 684 VRPQGRPAGGMAGVKLGEG---ARVVSFTAVDPAVDAVVFTVAGSRGTLDDSVQTTAKVT 740

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P ++     RAT GV      K E  +S   
Sbjct: 741 PFDQYPRKGRATGGVRCQRFLKGEDCLSFAW 771


>gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
 gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           parasanguinis ATCC 903]
          Length = 817

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/888 (32%), Positives = 450/888 (50%), Gaps = 80/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  SL  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG      +  L     
Sbjct: 516 SPRSFNAS-----TLEEVGKRDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL---SDFIQI 668
           +  G+ L   L+  + E     + F E    +  +    AT+ G ++R +    S +   
Sbjct: 571 KDIGEHLSQTLTNFEQEEE---ILFAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL  +D+ +         DI++ TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 RSKSTKYAKLKDQDDCIVAVAPVVLEDIMIITKNGYGLRFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GDQV +             +   +K M      ++   +    +  +   + +   +
Sbjct: 687 LKDGDQVSAAFKSTTPSMYILTQRGSLKRMLQDDIPVTSRAKRGLQVLRELKNKPHRVFK 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  F L          TS  +                              V 
Sbjct: 747 AGPVFTDQGDFDLF---------TSQEE------------------------------VA 767

Query: 849 DNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + DQI+ ++   G +  V + ++ I+ R + G  +  T  D+ V S  
Sbjct: 768 EQDQILQITSTTGQVTEVDLTQLSISERTSNGSFVNDTISDQEVFSAT 815


>gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
 gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           M23864:W1]
          Length = 800

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/884 (31%), Positives = 463/884 (52%), Gaps = 92/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGIIQGVDGIKKAYESGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E + L   IK+  +IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLTVIKDELNEIKKKFKVDRLSAIEAEISEIKIDKEVMVPSEEVILSITRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E++   +    ++   ++ + V AT++G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPIDEDEQV---INVYNEKDFNHDAFYVMATRNGMIKKSSVSQFKTTRFNKP 630

Query: 674 IA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  MK+  +DEI++V     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LVGMKVKDKDEIINVVRLESDQLITVITNKGMSLTYSTAEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEEVNESDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR S    + + R+ +GI      K N    +V    V +N +
Sbjct: 704 -------IIMVTQRGAIKRISYKVLQAAKRAQRGITLLKELKKNPH-RIVDAAVVRENQE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +          + ++ ++ + T G  I    +  +VVS+  
Sbjct: 756 TYTIFSNSNEESGSITDVHLSEQYTNGSFIIDVDEFGQVVSMVL 799



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 103/287 (35%), Gaps = 23/287 (8%)

Query: 622 LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDS 680
           L     E    I          + L  V   +   +++     F     S   A +    
Sbjct: 436 LEEEHDELEALIKKLRNILDDHDALLTVIKDELNEIKK----KFKVDRLSAIEAEISEIK 491

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++    
Sbjct: 492 IDKEVMVP---SEEVILSITRHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLKYQE 542

Query: 741 VLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           V   D      ++       +     +   +  +  S       +  +     ++    +
Sbjct: 543 VNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVINVYNEKDFNHD 602

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LV 856
            F +  +  G  K++S   F+ + R  K +    V   +EI  +V +    ++DQ+I ++
Sbjct: 603 AFYVMATRNGMIKKSSVSQFKTT-RFNKPLVGMKVKDKDEIINVVRL----ESDQLITVI 657

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++KG  +     E+        GV   +   ++ VV  E + ES+ +
Sbjct: 658 TNKGMSLTYSTAELSDTGLRAAGVKSINLKDEDYVVMTEEVNESDSI 704



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 113/277 (40%), Gaps = 19/277 (6%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  +    +
Sbjct: 490 IKIDKEVMVPSEEVILSITRHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKYQEVNTQ 546

Query: 694 NDILLTTKLGQCVRFPI---SAIR--VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
           + +L+ T  G+ +  P+   + IR        S  V    + + +QVI   +    D ++
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIV---PIDEDEQVI--NVYNEKDFNH 601

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK-LKEQFILTVSEKG 807
           D            ++      +     K    ++    +E    ++   +Q I  ++ KG
Sbjct: 602 DAFYVMATRNGMIKKSSVSQFKTTRFNKPLVGMKVKDKDEIINVVRLESDQLITVITNKG 661

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
                S+ +   +     G+++ ++        +V    VN++D II+V+ +G + R+  
Sbjct: 662 MSLTYSTAELSDTGLRAAGVKSINLKD---EDYVVMTEEVNESDSIIMVTQRGAIKRISY 718

Query: 868 NEIRIASRATKGVVIFS-TAKD-ERVVSVERIRESEI 902
             ++ A RA +G+ +     K+  R+V    +RE++ 
Sbjct: 719 KVLQAAKRAQRGITLLKELKKNPHRIVDAAVVRENQE 755


>gi|327489842|gb|EGF21632.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1058]
          Length = 816

 Score =  641 bits (1654), Expect = 0.0,   Method: Composition-based stats.
 Identities = 289/902 (32%), Positives = 464/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TVEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKMGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
                      +  ++++G  KR +  D  +++R+ +G++     K      + A  PV 
Sbjct: 704 -----------LYLLTQRGSLKRMAIADIPVTSRANRGLQVLRELKTKPH-RVFAAGPVY 751

Query: 848 --------------NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KGT   + + ++ ++ R + G  I  T  D+ V 
Sbjct: 752 GEAVDFDLFTTEAEAGEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDKEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTVEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKMGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201]
 gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201]
          Length = 851

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/849 (32%), Positives = 404/849 (47%), Gaps = 97/849 (11%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E+  + I  V +T EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M QMG+  +
Sbjct: 16  PEDFVEHIVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQMGLRPD 75

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + +VK AR+ GEVMGK HPHG+AAIYDA+ RMAQ +++R+ L++G GNFGS+D D PAA 
Sbjct: 76  RGHVKSARVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-DGPAAP 134

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+  AA  L  DL +D VDF PNYD  FQ+P VL A YPN+LVNG  GIAVGMAT
Sbjct: 135 RYTEARMAPAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIAVGMAT 194

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+  HN+ EV  G   ++ NP+  L+ LM++I GPD P+G  I+G  GI++AY TGRGS 
Sbjct: 195 NMAPHNMREVAAGARHLVLNPEATLEELMKLIPGPDLPSGGRIVGLEGIRDAYRTGRGSF 254

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             R    +E+ S  ++ IVVTE+PY V    + EKI + V+ K++  I+D+ D +DR  G
Sbjct: 255 RTRATVSVEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDLTDRTNG 314

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+K G +   +L QLYR+T L+  F +N VAL   +P    L+ +L+ +   R  
Sbjct: 315 LRLVIEVKNGFNPQAVLAQLYRHTPLEESFGINNVALVDGQPRTMGLLELLRVYTDHRIA 374

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  L+         
Sbjct: 375 VVRRRTAFRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDRLIA-------- 426

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS  Q   ILELRL +LT   R ++  E + L  EI E 
Sbjct: 427 ------------------VFDLSRAQAEHILELRLRQLTKFSRIELEAERDQLQKEIAEL 468

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-------------- 533
             IL S + L G++  EL     +    RRT ++E                         
Sbjct: 469 EAILGSETTLRGVVADELSETAQKFGDERRTVLLEAEDLPAVTAAQTGGKKAATSVALEI 528

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             +   V +S  G + R      R    G +          D +T +   +    +   +
Sbjct: 529 SDDPCWVFLSTTGRIARSATR--RPLADGSRRF------KHDALTSVVPATARGEIAAVT 580

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G + +     +P+         L + +       +                 V   T 
Sbjct: 581 STGRMLRVSCVDIPVLQDFDGVPRLADGVPAADFLGLEKNEALVGLAPLSE--VVAIGTA 638

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V+R      + +      A+KL   D ++ V       ++++ +   + + FP SA+
Sbjct: 639 AGVVKRVNPDYPLNL--DQWPAIKLKDGDRVVGVSAAPDGTELVMVSSDAKLLHFPASAV 696

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV G+ LA G+ VI  A V+  D+              +    S       
Sbjct: 697 RP-QGRTAGGVAGMKLAAGEHVIFCAAVVPQDSTVVVTQARGDGQLPEMGEAS------- 748

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                               K T   +F    R+  G+RA  + 
Sbjct: 749 -----------------------------------VKVTPLSEFPAKGRATAGVRAQRLL 773

Query: 834 KINEIGALV 842
              +   L 
Sbjct: 774 AGEDALNLA 782



 Score = 65.2 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 79/273 (28%), Gaps = 37/273 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   VF +  G + R+     +               D + SV   T   +I   T  G
Sbjct: 530 DDPCWVFLSTTGRIARSATRRPLADGSRRF------KHDALTSVVPATARGEIAAVTSTG 583

Query: 704 QCVRFPISAIRVFAG-----RNSVGVRGIS---LAKGDQVISMAIVLHADADYDERICYM 755
           + +R     I V        R + GV       L K + ++ +A +    A         
Sbjct: 584 RMLRVSCVDIPVLQDFDGVPRLADGVPAADFLGLEKNEALVGLAPLSEVVAIGTAAGVVK 643

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +        +           +         +     +   +  +L            + 
Sbjct: 644 RVNPDYPLNLDQWPAIKLKDGDRVVGVSAAPDGTELVMVSSDAKLLHF---------PAS 694

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK---GTL-------IR- 864
             R   R+  G+    ++       ++    V   D  ++V+     G L       ++ 
Sbjct: 695 AVRPQGRTAGGVAGMKLAAGE---HVIFCAAVVPQDSTVVVTQARGDGQLPEMGEASVKV 751

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            P++E     RAT GV        E  +++  +
Sbjct: 752 TPLSEFPAKGRATAGVRAQRLLAGEDALNLAWV 784



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 13/138 (9%)

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI---SNRS 823
                +      +   G    E    L    + +   +  G  KR +  D+ +       
Sbjct: 600 DGVPRLADGVPAADFLGLEKNEALVGLAPLSEVVAIGTAAGVVKRVNP-DYPLNLDQ--- 655

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                A  +   +    +V V    D  ++++VS    L+  P + +R   R   GV   
Sbjct: 656 ---WPAIKLKDGDR---VVGVSAAPDGTELVMVSSDAKLLHFPASAVRPQGRTAGGVAGM 709

Query: 884 STAKDERVVSVERIRESE 901
             A  E V+    +   +
Sbjct: 710 KLAAGEHVIFCAAVVPQD 727


>gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
 gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A
 gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5]
          Length = 744

 Score =  641 bits (1653), Expect = 0.0,   Method: Composition-based stats.
 Identities = 275/802 (34%), Positives = 419/802 (52%), Gaps = 73/802 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  + I +E++ +Y+ YA++VI+GRAIPD+RDGLKPV RRIL+ M +MG+  +K 
Sbjct: 2   ENRENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI GE +GKYHPHG+ A+Y+AL RMAQD+++R  LI GQGNFGS+DGDP A  RY
Sbjct: 62  FKKSARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   A  +L D+ KDTVDF+PN+D +  EP VL +++PN+L NG  GIAVG+AT+I
Sbjct: 122 TEAKLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV +  V +  NP I +D +MEI++GPDFPTG VI     +K  Y TGRG I +
Sbjct: 182 PPHNLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENFAQVKEIYKTGRGIIKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           +G +H+EK  G RE+IV+TEIPYQVNKA +++KIA+ VR  +I +I+D+RDE+D++G R+
Sbjct: 242 KGKAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELKR A  + +L +LY+YT L+  F VN+V L   +P+   +  +L+ F+  R EV++
Sbjct: 302 VVELKRDAKGEEVLKKLYKYTPLEKGFPVNLVVLIDKEPKLVDIKTLLREFIKHRLEVIL 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+KY L K +DR H++ GL  A+  +D+++  IR S +   AR  LM+           
Sbjct: 362 RRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q +A+L+LRL RLT L R+ +  E   L  +I+    +
Sbjct: 412 ----------------FGLSEKQAQAVLDLRLQRLTSLEREKLLEEEKELREKIEYYKKL 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           ++S    + +  +E   +  +    RRT I       E          V  +     +  
Sbjct: 456 VASEGERIKVFIEETEELVKKYGDKRRTFIGGVKEVKEGSIT------VAVLQDGSIIPV 509

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L + +A                              +   S+ G VY     +   GS
Sbjct: 510 EELPLEKAPVVNILRVPFTEG-----------------LFLVSNRGRVYWIAGSQALQGS 552

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
                             +                  ++ ATK G V++  L++F     
Sbjct: 553 K--------------VSLKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKA 597

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            G   +KL   DE++S+ +   E  ILL TK G+  RF +  +       + GV+GI L 
Sbjct: 598 QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPST-PGARGVQGIKLE 656

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           K D+   + I      + +  +  +      +++   +  +       + V G       
Sbjct: 657 KNDETSGLRI-----WNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVD 711

Query: 791 QELKLKEQFILTVSEKG---FG 809
                +E  +L  ++ G   +G
Sbjct: 712 LIPIKEEVELLITTKNGKAFYG 733



 Score = 77.9 bits (190), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 19/241 (7%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +   E      P            +   +  G V                  + L SR+E
Sbjct: 507 IPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRV-----YWIAGSQALQGSKVSLKSREE 561

Query: 684 ILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +      +   N +LL TK G   + P++         + G+  I L +GD+V+S+A  
Sbjct: 562 KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY----KAQGMPIIKLTEGDEVVSIA-- 615

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
             +  +    +   K   A+  +         +            E     +   E ++L
Sbjct: 616 -SSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLL 674

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            ++ KG  K+ S  +   +NR  KG              LV + P+ +  ++++ +  G 
Sbjct: 675 VITAKGRVKKISHEEIPKTNRGVKG-----TEVSGTKDTLVDLIPIKEEVELLITTKNGK 729

Query: 862 L 862
            
Sbjct: 730 A 730



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L  ++KG+ K+    +F       +G+    +++      +V++    D   I+L 
Sbjct: 573 GNRLLLATKKGYVKKIPLAEFEYK---AQGMPIIKLTEG---DEVVSIASSVDETHILLF 626

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           + KG + R  V E+  ++   +GV      K++ 
Sbjct: 627 TKKGRVARFSVREVPPSTPGARGVQGIKLEKNDE 660



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
            ++++   I                             + +  +K     E         
Sbjct: 560 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSI----- 614

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
              + E  IL  ++KG   R S  +   S    +G++   + K +E      +   N   
Sbjct: 615 ASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETS---GLRIWNGEP 671

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRES 900
            +++++ KG + ++   EI   +R   GV     +   + +V +  I+E 
Sbjct: 672 YLLVITAKGRVKKISHEEIPKTNR---GVKGTEVSGTKDTLVDLIPIKEE 718



 Score = 45.2 bits (105), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 13/95 (13%)

Query: 811 RTSSYD--FRISNRSG-------KGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKG 860
           R    +  F +SNR         + ++ + VS  +    +V  F      ++++L + KG
Sbjct: 524 RVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFIREKFGNRLLLATKKG 583

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            + ++P+ E        +G+ I    + + VVS+ 
Sbjct: 584 YVKKIPLAEFEYK---AQGMPIIKLTEGDEVVSIA 615


>gi|322385168|ref|ZP_08058815.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
 gi|321270792|gb|EFX53705.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus cristatus
           ATCC 51100]
          Length = 816

 Score =  640 bits (1651), Expect = 0.0,   Method: Composition-based stats.
 Identities = 288/902 (31%), Positives = 464/902 (51%), Gaps = 111/902 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S    +         +   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTISNFDTKEEVIYAELLD---SFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + ++ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEEDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +  ++++G  KR +  D  +++R+ +G++     K      + A  PV 
Sbjct: 704 -----------LYLLTQRGSIKRMAVADIPVTSRANRGLQVLRELKTKPH-RVFAAGPVY 751

Query: 849 D---------------NDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                            +QI+ ++S+KGT+  + + ++ ++ R + G  I  T  DE V 
Sbjct: 752 GQAVDFDLFTTEAEAIEEQILQVLSNKGTVYEINLVDLSLSERTSNGSFISDTISDEEVF 811

Query: 893 SV 894
           S 
Sbjct: 812 SA 813



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYAELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEEDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 798

 Score =  640 bits (1650), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/879 (32%), Positives = 456/879 (51%), Gaps = 101/879 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTKY
Sbjct: 305 KDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + NE N L   IKE   IL +  
Sbjct: 410 -----------FEFTEAQAEAIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I      + ++ E  +  ED+V++++  GY+KR   
Sbjct: 459 ALLQVIKSELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + V ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ L+  E +   +    ++S  ++ + V AT++G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPLDDYETV---VDVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKP 630

Query: 674 I-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + AMK+   DE+++V    ++  I + T  G  + +    +    G  + GV+ I+L   
Sbjct: 631 LVAMKVKDNDELINVIRLNEDQLISVLTHKGMSLTYSSEEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V    +                                              
Sbjct: 690 DFVVMTDVVDSDSS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+  +++G  KR S    + + R+ +GI      K N    +VA + V D   
Sbjct: 704 -------IIMATQRGAVKRISYKILQQAKRAQRGITLLKELKKNPH-RVVAGYVVKDESM 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAK 887
             L S+     G +      +I ++ + T G  +     
Sbjct: 756 YTLYSESHSEEGQI-----TDIHLSEQYTNGSFVVDVKD 789



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E+ +L  T+ G   R   ++ R F   N+ GV  + L  GD ++    V
Sbjct: 493 DKEVMVP---SEDVVLSITRQGYIKR---TSTRSF---NASGVTEVGLKDGDSLLKYQTV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S          + +   ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVVDVYNEQSFKDDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  +  G  K+++   F+ + R  K + A  V        L+ V  +N++  I +++ 
Sbjct: 604 FYVLATRNGMIKKSNVSLFKTT-RYNKPLVAMKVKD---NDELINVIRLNEDQLISVLTH 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG  +     E+        GV   +   ++ VV  + +   
Sbjct: 660 KGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVMTDVVDSD 701


>gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
 gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78]
          Length = 822

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 282/840 (33%), Positives = 412/840 (49%), Gaps = 93/840 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPA 126
            + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   DPPA
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+  AA  + + + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNLGEVV     +I +P+ DLD LM+ + GPD PTG  I+G  GI++AYA GRG
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIVGLAGIRDAYANGRG 256

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR 
Sbjct: 257 SFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRE 316

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R
Sbjct: 317 HGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDHR 376

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++      
Sbjct: 377 FSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIE------ 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE QT+ IL+  L RLT   R ++ +E + L  EI+
Sbjct: 431 --------------------HFSLSETQTQYILDTPLRRLTRFDRIELESERDRLNAEIE 470

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVS 543
           E   IL S + L  ++  EL +V  +  TPRRT ++E          +    +   V +S
Sbjct: 471 ELTAILESDTELRKLVSGELAAVAKKYGTPRRTVLLESADTPVAAIPLQVADDPCRVLLS 530

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R                        D +      +    V   +S G + +  V
Sbjct: 531 STGVIAR-------TPGTEPLQEGSAKRAKHDVIRSAVPATARGEVGAVTSAGRLLRITV 583

Query: 604 WRLPI-----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
             LP      G     G  +   + L   E +  +    E     ++  +   T  G V+
Sbjct: 584 VDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTLDE-----SSPGLAIGTAQGVVK 638

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          R     + L   D I+      T E D++  T   Q +RF  SA+R   
Sbjct: 639 RVVPDYPAN--REELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRP-Q 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GV G+ LA G +V+S  +V  A       +   +         +           
Sbjct: 696 GRPAGGVAGVKLADGAKVLSFDVVDPAVDAAVFTVAGSRGTLDDSVQTT----------- 744

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                           K T    F    R+  G+R     K  +
Sbjct: 745 -------------------------------AKLTPFDQFPRKGRATGGVRCQRFLKGED 773



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTT------KLGQCVRFPISAIRVFAGRNSVG 723
            +   A+ L   D+   V   +    ++  T      + G   R     IR      + G
Sbjct: 510 DTPVAAIPLQVADDPCRVLLSSTG--VIARTPGTEPLQEGSAKRAKHDVIRSAVPATARG 567

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                            V    +        +  +                +     +EG
Sbjct: 568 ----------------EVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEG 611

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           + +      L      +   + +G  KR    D+   NR    +         E   +V 
Sbjct: 612 DETLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPA-NREELEVITLR-----EGDRIVG 664

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ ++D   L+R   + +R   R   GV     A   +V+S + +  +
Sbjct: 665 AAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAKVLSFDVVDPA 722



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 82/271 (30%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ +Q   + +        D I S    T   ++   T  G
Sbjct: 522 DDPCRVLLSSTGVIARTPGTEPLQEGSAKRA-----KHDVIRSAVPATARGEVGAVTSAG 576

Query: 704 QCVRFPISAIRVFA-GRNSVGVRG------ISLAKGDQVISMAIVLHADADYDERICYMK 756
           + +R  +  +   A G     V G      + L   + ++ +  +  +            
Sbjct: 577 RLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTLDESSPGLAIGTAQGV 636

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                    +   E       +             EL+  E+ ++ +++     R  +  
Sbjct: 637 VKRVVPDYPANREELEVITLREGDRIVG-----AAELRTGEEDLVFITDDAQLLRFQASA 691

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IRV 865
            R   R   G+    ++       +++   V+      + +    +GTL           
Sbjct: 692 VRPQGRPAGGVAGVKLADG---AKVLSFDVVDPAVDAAVFTVAGSRGTLDDSVQTTAKLT 748

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P ++     RAT GV      K E  +S   
Sbjct: 749 PFDQFPRKGRATGGVRCQRFLKGEDCLSFAW 779


>gi|318062526|ref|ZP_07981247.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actG]
 gi|318078753|ref|ZP_07986085.1| DNA topoisomerase IV subunit A [Streptomyces sp. SA3_actF]
          Length = 822

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 283/840 (33%), Positives = 412/840 (49%), Gaps = 93/840 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPA 126
            + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   DPPA
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+  AA  + D + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNLGEVV     +I +P+ DLD LM+ + GPD PTG  I+G  GI++AYA GRG
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIVGLAGIRDAYANGRG 256

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR 
Sbjct: 257 SFKTRASVTVENVTARRKGLVVTELPFTVGPEKVVAKIKDLVGSKKLQGIADVKDLTDRE 316

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R
Sbjct: 317 HGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDHR 376

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++      
Sbjct: 377 FSVVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIE------ 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE QT+ IL+  L RLT   R ++ +E + L  EI+
Sbjct: 431 --------------------HFSLSETQTQYILDTPLRRLTRFDRIELESERDRLNAEIE 470

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVS 543
           E   IL S + L  ++  EL +V  +  TPRRT ++E          +    +   V +S
Sbjct: 471 ELTAILESDTELRKLVSGELAAVAKKYGTPRRTVLLESADTPVAAIPLQVADDPCRVLLS 530

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R                        D +      +    V   +S G + +  V
Sbjct: 531 STGVIAR-------TPGTEPLQEGSAKRAKHDVIRSAVPATARGEVGAVTSAGRLLRITV 583

Query: 604 WRLPI-----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
             LP      G     G  +   + L   E +  +    E     ++  +   T  G V+
Sbjct: 584 VDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTLDE-----SSPGLAIGTAQGVVK 638

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          R     + L   D I+      T E D++  T   Q +RF  SA+R   
Sbjct: 639 RVVPDYPAN--REELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRP-Q 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GV G+ LA G +V+S  +V  A       +   +         +           
Sbjct: 696 GRPAGGVAGVKLADGAKVLSFDVVDPAVDAAVFTVAGSRGTLDDSVQTT----------- 744

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                           K T    F    R+  G+R     K  +
Sbjct: 745 -------------------------------AKLTPFDQFPRKGRATGGVRCQRFLKGED 773



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 67/238 (28%), Gaps = 32/238 (13%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTT------KLGQCVRFPISAIRVFAGRNSVG 723
            +   A+ L   D+   V   +    ++  T      + G   R     IR      + G
Sbjct: 510 DTPVAAIPLQVADDPCRVLLSSTG--VIARTPGTEPLQEGSAKRAKHDVIRSAVPATARG 567

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                            V    +        +  +                +     +EG
Sbjct: 568 ----------------EVGAVTSAGRLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEG 611

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           + +      L      +   + +G  KR    D+   NR    +         E   +V 
Sbjct: 612 DETLVCLCTLDESSPGLAIGTAQGVVKRV-VPDYPA-NREELEVITLR-----EGDRIVG 664

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ ++D   L+R   + +R   R   GV     A   +V+S + +  +
Sbjct: 665 AAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGVKLADGAKVLSFDVVDPA 722



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 82/271 (30%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ +Q   + +        D I S    T   ++   T  G
Sbjct: 522 DDPCRVLLSSTGVIARTPGTEPLQEGSAKRA-----KHDVIRSAVPATARGEVGAVTSAG 576

Query: 704 QCVRFPISAIRVFA-GRNSVGVRG------ISLAKGDQVISMAIVLHADADYDERICYMK 756
           + +R  +  +   A G     V G      + L   + ++ +  +  +            
Sbjct: 577 RLLRITVVDLPQLAEGAGPALVGGAPVAEFVRLEGDETLVCLCTLDESSPGLAIGTAQGV 636

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                    +   E       +             EL+  E+ ++ +++     R  +  
Sbjct: 637 VKRVVPDYPANREELEVITLREGDRIVG-----AAELRTGEEDLVFITDDAQLLRFQASA 691

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IRV 865
            R   R   G+    ++       +++   V+      + +    +GTL           
Sbjct: 692 VRPQGRPAGGVAGVKLADG---AKVLSFDVVDPAVDAAVFTVAGSRGTLDDSVQTTAKLT 748

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P ++     RAT GV      K E  +S   
Sbjct: 749 PFDQFPRKGRATGGVRCQRFLKGEDCLSFAW 779


>gi|157150712|ref|YP_001450523.1| DNA topoisomerase IV subunit A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075506|gb|ABV10189.1| DNA topoisomerase IV, A subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 816

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 287/898 (31%), Positives = 462/898 (51%), Gaps = 109/898 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D V++ A + + D+                                          
Sbjct: 687 LKKDD-VLAAAFIANTDS------------------------------------------ 703

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      +  ++++G  KR +  D  +++R+ +G++     K       VA     
Sbjct: 704 -----------LYILTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFVAGPVFG 752

Query: 849 D--------------NDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +               +QI+ ++S+KGT   + + ++ ++ R + G  I  +  DE V
Sbjct: 753 EAVDFDLFTTEAEAGEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDSISDEEV 810



 Score = 97.9 bits (242), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 76/558 (13%), Positives = 166/558 (29%), Gaps = 37/558 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I     +   
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIILARSRFDKAKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +     +              V  T+ G ++R   
Sbjct: 464 KRELRDVKKKFGNP------RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          M     D ++ V        +L+ T LG  +  P+  +     +   
Sbjct: 518 RSFSASTLEE---MGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIG 574

Query: 723 GV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               + I +    ++VI   ++   +         +  +    R          S     
Sbjct: 575 EHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKF 634

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +   N  ++      +K   ++ V++ G+  R +  +  +      G++A ++ K     
Sbjct: 635 AKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKK----D 690

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
            ++A   + + D + +++ +G+L R+ V +I + SRA +G+ +          V V    
Sbjct: 691 DVLAAAFIANTDSLYILTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFVAGPV 750

Query: 899 ESEIVD------EAESTE 910
             E VD      EAE+ E
Sbjct: 751 FGEAVDFDLFTTEAEAGE 768


>gi|307154402|ref|YP_003889786.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
 gi|306984630|gb|ADN16511.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7822]
          Length = 870

 Score =  639 bits (1649), Expect = 0.0,   Method: Composition-based stats.
 Identities = 298/938 (31%), Positives = 458/938 (48%), Gaps = 138/938 (14%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KC
Sbjct: 12  QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPYRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM QD+S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQDFSTRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   AH  +L ++ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP H
Sbjct: 132 LAPIAHEAILGNISEAIVDFTSNFDNSQQEPVVLPAQLPLLLLNGCSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+ID+P ++   L EII GPDFPTG  I+   GI  AY T +G I IRGV
Sbjct: 192 NLGEIVDGLIALIDHPQLEDRQLWEIIPGPDFPTGGEIIDTEGIIEAYRTSKGIIPIRGV 251

Query: 254 SHIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +H+E  S       +R  IVVTE+PYQVNK+A +EK+AELV + R+  IAD+RDESDR G
Sbjct: 252 THLETISLEGRRPKERTAIVVTELPYQVNKSAWIEKVAELVNQGRLEGIADIRDESDRLG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR   +  IL+ LYR T+LQ+ F   ++AL   KP + +L  +L+ F+ FRE+
Sbjct: 312 MRVVIELKRETDSQKILDNLYRQTALQTNFGTILLALVENKPCQLSLRQLLEEFLKFREQ 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            ++R+  + L +A+ R H+L GL IA+ NLD V+ I+R SP+  TA++   +        
Sbjct: 372 TLIRQYSHELAQAQHRLHLLSGLLIALRNLDRVIDILRNSPDGTTAKQRFSE-------- 423

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q+ +IL + + RLTGL +  +  E   L   I + 
Sbjct: 424 ------------------AFNLSEEQSDSILSMPMRRLTGLEQQKLDTEYQELEQRINQL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------EDCIVREDMVVT 541
             +L+ R+ L+  +K+EL S+K +   PRRTRI   L           +     +  VV 
Sbjct: 466 QTLLNDRNELMKSLKKELRSLKRKFANPRRTRIRSCLSTPSSSSPEILDSLPPGKKRVVL 525

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            +      +   +  +A               ++  F           ++L  +  G++Y
Sbjct: 526 PTVTDEPIKTENAAKKASDSPKNATPKAQQSGQNSSFTLFTPQTPPADALLTITYQGYIY 585

Query: 600 KEKVWRLPIGSPQARGK-----------------------------------------AL 618
            +   +        + +                                         +L
Sbjct: 586 WQSSVQATDSIASLKQEEDFPIYRQAIAQKELLIVITNQGKAYPISVVDIPPKDSQACSL 645

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +++L     ++   ++ +       N   ++  ++ G ++R  LS+  Q+   G   +K 
Sbjct: 646 LSLLPNAAQKKAEKVVGYFFLPEEKNTHELILLSQQGRIKRLPLSELNQLGNRGLALIKF 705

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISA-IRVFAGRNSVGVRGISLAKGDQVIS 737
              DE+  V   + + +I + T  G+ +RF IS  +    GRN+ G + + L  G+ +  
Sbjct: 706 KDADELSYVCLSSVDEEIAIATTGGRILRFKISDELLSLMGRNAQGNQALRLRYGEHLAG 765

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                  D                                                    
Sbjct: 766 CVTTKAQD---------------------------------------------------- 773

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            +++ +++ G+ KR      RI+     G  A   S   +   L  +     + ++ L++
Sbjct: 774 -YLVLITQLGYAKRLPVNSLRITKLGEIGTTALQFST--KTDNLAGIVLNQPSGKVALIT 830

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           ++   + +    + I  +   G  +     +E +V V 
Sbjct: 831 NQQRRLILSAESVGIWGKDGVGDRLVKLKSEESIVLVV 868


>gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
 gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE]
          Length = 818

 Score =  639 bits (1648), Expect = 0.0,   Method: Composition-based stats.
 Identities = 280/840 (33%), Positives = 408/840 (48%), Gaps = 84/840 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +M
Sbjct: 6   TKTPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVD++ NYDG  +EPVVL A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I +P+ DLDALM  + GPD PTG  I+G  GIK+AYA
Sbjct: 186 AVGMATNMPPHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGGRIVGLGGIKDAYA 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRG+  IR    IE  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 SGRGTFKIRATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDREHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RR+++   K RDR H++ GL +A+ ++DEV+R+IR S N   A+  LM+R 
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+QT+ IL+  L RLT   R ++ +E + L 
Sbjct: 425 -------------------------FSLSEIQTQYILDTPLRRLTRFDRIELESERDRLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            EI     IL S + L  ++  EL +V  +  T RRT ++E            +  +   
Sbjct: 460 DEIAALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQVASVPLEVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R       A                D +      +    V   +S G + 
Sbjct: 520 VLLSSTGLLART------ANADPIVVAEDTKRTKHDVIVSAVPATARGDVGAVTSTGRLL 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVR 658
           +  V  LP          L     +++   + T             +  +   T  G V+
Sbjct: 574 RLSVIDLPQLPDTHTAPTLSGGAQISEFLTLETGEELICLSTLEEESPGLAIGTLQGVVK 633

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          +     + L   D I+   +  T E D++  T   Q +R+P + +R   
Sbjct: 634 RVVPDYPPN--KDEWEIISLKDGDRIVGATQLLTGEEDLVFITSDAQLLRYPAAQVRP-Q 690

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + G+ GI L     V+S   V  A       +                         
Sbjct: 691 GRAAGGMTGIKLGADAAVLSFTAVDPAADAVVFTVAGSHGTLDDSERTW----------- 739

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                           K T    +    R+  G+R     K  +
Sbjct: 740 --------------------------------KLTPFDQYPRKGRATGGVRCQRFLKGED 767



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 15/178 (8%)

Query: 731 KGDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D ++S        D         +  +S        DT    +L   + +   ++ E 
Sbjct: 547 KHDVIVSAVPATARGDVGAVTSTGRLLRLSVIDLPQLPDTHTAPTLSGGAQISEFLTLET 606

Query: 790 CQEL------KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +EL      + +   +   + +G  KR    D+  +          ++  + +   +V 
Sbjct: 607 GEELICLSTLEEESPGLAIGTLQGVVKRV-VPDYPPNK------DEWEIISLKDGDRIVG 659

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ ++    L+R P  ++R   RA  G+       D  V+S   +  +
Sbjct: 660 ATQLLTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMTGIKLGADAAVLSFTAVDPA 717



 Score = 55.2 bits (131), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 90/271 (33%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   +D I +    K        D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANADPIVVAEDTKRT----KHDVIVSAVPATARGDVGAVTSTG 570

Query: 704 QCVRFPISAIRVFAGRNSV----GVRGI----SLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +      ++     G   I    +L  G+++I ++ +       +     +
Sbjct: 571 RLLRLSVIDLPQLPDTHTAPTLSGGAQISEFLTLETGEELICLSTLEE-----ESPGLAI 625

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
             +    + +  D           S++         +L   E+ ++ ++      R  + 
Sbjct: 626 GTLQGVVKRVVPDYPPNKDEWEIISLKDGDRIVGATQLLTGEEDLVFITSDAQLLRYPAA 685

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL---IRV---- 865
             R   R+  G+    +       A+++   V+     ++ +     GTL    R     
Sbjct: 686 QVRPQGRAAGGMTGIKLGA---DAAVLSFTAVDPAADAVVFTVAGSHGTLDDSERTWKLT 742

Query: 866 PVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
           P ++     RAT GV        ++ +V   
Sbjct: 743 PFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 773


>gi|229824235|ref|ZP_04450304.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
 gi|229786589|gb|EEP22703.1| hypothetical protein GCWU000282_01539 [Catonella morbi ATCC 51271]
          Length = 819

 Score =  638 bits (1646), Expect = 0.0,   Method: Composition-based stats.
 Identities = 277/876 (31%), Positives = 438/876 (50%), Gaps = 95/876 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I  +S  D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +     +  Y
Sbjct: 2   SQEMIQELSFADVIGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYRDRNTADNPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+QDW LR  LI+  GN GS+DGDP AA RYT
Sbjct: 62  RKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLRNPLIDMHGNNGSMDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL D+ ++TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT IP
Sbjct: 122 EARLSPIAAQLLRDIKQETVDFILNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++D  + ++ +    L+ L++++ GPDFPTGA+I G   I+ AY TG+G I + 
Sbjct: 182 PHNLGEIIDAVIYLLTHKRPKLEELLDLVPGPDFPTGAIIQGIDAIQQAYKTGQGKITLV 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE   G + QIVVTE+PY+VNK+ +++++ E+  ++++  IAD+RDESDR G R+V
Sbjct: 242 SQTDIETLKGGKSQIVVTELPYEVNKSKLIQRLDEIRIQRKVEGIADVRDESDRNGVRLV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +ELKR   A  IL  L ++T LQ  +  NMVA+N  +PE   L  +L+A+++ ++EV+ R
Sbjct: 302 VELKRDVDAKGILTYLLKHTDLQVNYHFNMVAINKRRPELVNLQTMLEAYISHQQEVLTR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L   + R H++ GL   V+ LDEV+  IR S N + A+  L+             
Sbjct: 362 RTQYDLANDQKRLHIVDGLIRVVSILDEVIATIRRSDNKQEAKENLVAE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S  Q+ AI+ L+L RLT      ++ E   L   I    +IL
Sbjct: 411 ---------------FDFSMEQSEAIVSLQLYRLTNTDITALQQERLELNERILMYQNIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           S+   L  ++  EL ++K +  TPRR++I      L+++    I  E ++V+++  GY+K
Sbjct: 456 SNPEILNKVLINELKAIKKDFATPRRSQIQAEVQSLEIDTHILIPDEQVMVSLTKEGYMK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  +  + +        + + +RD D+   +  +STH  ++  +S G      V  LP  
Sbjct: 516 RTSMRSFASS-----DLNSLGLRDFDYPIFVEELSTHQELVIITSKGNYIHIPVHELPEV 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G  L     L  GER           +S     V+ ATK G +++  LS F    
Sbjct: 571 KWKDLGVHLSQNYQLQDGERF-----VNAFVASQEEHKVILATKAGMIKQTPLSAFTTYR 625

Query: 670 ---RSGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                   AM L    DE+++VE        +++L ++   C+R+    +    G  + G
Sbjct: 626 SYKTRTAKAMNLLDDQDEVVAVECLKAGQNYEVVLLSRRSYCLRYSADLVSEM-GLKAKG 684

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V  I L + DQV++  +V                                          
Sbjct: 685 VTAIKLKEEDQVVACLVVNQ---------------------------------------- 704

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                     + K   +  ++++G  KR+         R  +G+      K N    L  
Sbjct: 705 ----------EAKRPQLFALTQRGNVKRSDLTVIPELGRGSRGVLLLKELKTNPHQLLKV 754

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +       Q+ L+ D G  +    +EI ++ R   G
Sbjct: 755 LALDKAQHQVCLLGDTGHSVVFAASEIPLSDRLANG 790



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 89/271 (32%), Gaps = 70/271 (25%)

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
             +         +   +V  TK G ++R  +  F     S   ++ L   D  + VE  +
Sbjct: 489 QSLEIDTHILIPDEQVMVSLTKEGYMKRTSMRSFAS---SDLNSLGLRDFDYPIFVEELS 545

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADY 748
              ++++ T  G  +  P+  +     ++ +GV   +   L  G++ ++  +        
Sbjct: 546 THQELVIITSKGNYIHIPVHELPEVKWKD-LGVHLSQNYQLQDGERFVNAFV-------- 596

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                          +E  ++  ++ G 
Sbjct: 597 --------------------------------------------ASQEEHKVILATKAGM 612

Query: 809 GKRTSSYDFRI----SNRSGKGIRATDVSKINEIGALVAV--FPVNDNDQIILVSDKGTL 862
            K+T    F        R+ K   A ++   ++   +VAV       N +++L+S +   
Sbjct: 613 IKQTPLSAFTTYRSYKTRTAK---AMNLL--DDQDEVVAVECLKAGQNYEVVLLSRRSYC 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +R   + +       KGV      ++++VV+
Sbjct: 668 LRYSADLVSEMGLKAKGVTAIKLKEEDQVVA 698


>gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
 gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis]
 gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261]
          Length = 823

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVVD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D+LL ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 KSKSVKYAKLKDDTDQIVAVAPIKLDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I              +    + +R+   +    +  K    V   +  +
Sbjct: 688 LKEDDTLQSAFI------CNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNK 741

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +          +V+E+GF                              G L +   V 
Sbjct: 742 PHRVFLAG-----SVAEQGFV-----------------------------GDLFS-TEVE 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 ENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 142/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   ++  
Sbjct: 588 EEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYK--SKSVKYAKL--KDDTD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSA 697


>gi|315222938|ref|ZP_07864817.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
 gi|315187888|gb|EFU21624.1| DNA topoisomerase IV, A subunit [Streptococcus anginosus F0211]
          Length = 818

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 282/888 (31%), Positives = 455/888 (51%), Gaps = 81/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVILEEEQAELREKIAMLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELREVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +          V  RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNSS-----TVDEVGKRDDDRLIFISSAKTTQHLLIFTNLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           ++   ++       TK G ++R +   F      
Sbjct: 571 KEIGEHLSQTITNFETNEEVIYTELVDN---FDEGTYFAVTKLGQIKRVERKQFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +   +  + +D++L T+ G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSVKFAKLKNEDDQIITLSPIKLDDVMLVTQNGYALRFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  IV         +   +K M+     ++        +  D   + +   +
Sbjct: 687 LKKDDVLAAAFIVNTDSFYILTQRGALKRMAVADIPVTSRANRGLQVLRDLKSKPHRVFQ 746

Query: 789 RCQELKLKEQFI-LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                  +   + L  S+                                        P 
Sbjct: 747 AGPVFGEQPAELDLFSSDN---------------------------------------PT 767

Query: 848 NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + +QI+ ++S+KGT  +V + ++ ++ R + G  I  T  DE V S 
Sbjct: 768 AEEEQILSIISNKGTTYQVNLADLGLSERTSNGSFISDTISDEEVFSA 815



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 82/264 (31%), Gaps = 33/264 (12%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELREVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRGGYLKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S +     R             D++I   S     H     +      + +  
Sbjct: 516 SPRSFNSSTVDEVGKR-----------DDDRLIFISSAKTTQHLLIFTNLGNVIYRPVHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF--- 817
              +   +  E  S    +                 E     V++ G  KR     F   
Sbjct: 565 LADIRWKEIGEHLSQTITNFETNEEVIYTELVDNFDEGTYFAVTKLGQIKRVERKQFSPW 624

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
           R      K ++   +   NE   ++ + P+  +D ++LV+  G  +R  + E+ +     
Sbjct: 625 RTYK--SKSVKFAKL--KNEDDQIITLSPIKLDD-VMLVTQNGYALRFNIEEVPVVGAKA 679

Query: 878 KGVVIFSTAKDERVVSVERIRESE 901
            GV   +  KD+ V++   I  ++
Sbjct: 680 AGVKAINLKKDD-VLAAAFIVNTD 702


>gi|295836110|ref|ZP_06823043.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
 gi|197695204|gb|EDY42137.1| DNA gyrase subunit A [Streptomyces sp. SPB74]
          Length = 822

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 285/840 (33%), Positives = 413/840 (49%), Gaps = 93/840 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + + E+ I  + + DEMQ+SYL YA +VI  RA+PD RDGLKPV RRI++ M +MG+  
Sbjct: 17  DEADFEERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRP 76

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPA 126
            + YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   DPPA
Sbjct: 77  ERGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPA 136

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+  AA  + D + ++TVDF PNYDG  QEP+ L A YPN+LVNG  GIAVGM
Sbjct: 137 AMRYTESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGM 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNLGEVV     +I  P+ DLDALM+ + GPD PTG  I+G  GI++AYA GRG
Sbjct: 197 ATNMAPHNLGEVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIVGLGGIRDAYANGRG 256

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D +DR 
Sbjct: 257 SFKTRATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRE 316

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ ++  R
Sbjct: 317 HGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKEMLEVYLDHR 376

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV RR+++   K  +R H++ GL +A+ ++DEV+R+IR S N   A++ L++      
Sbjct: 377 FSVVRRRSEFRRTKRLNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIE------ 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE QT+ IL+  L RLT   R ++ +E + L  EI+
Sbjct: 431 --------------------HFSLSETQTQYILDTPLRRLTKFDRLELESERDRLNAEIE 470

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMVVTVS 543
           E   IL S + L  ++  EL +V  +  TPRRT ++E          +    +   V +S
Sbjct: 471 ELTAILESDAELRKLVSSELAAVAKKHGTPRRTVLLESADSPVAAIPLQVADDPCRVLLS 530

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R                        D +      +    V   +S G + +  V
Sbjct: 531 STGVIAR-------TPGTEPLQEGSAKRAKHDVIRSAVPATARGEVGAVTSAGRLLRLTV 583

Query: 604 WRLPI-----GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
             LP      G     G  +   L L   E +  +    E     ++  +   T  G V+
Sbjct: 584 VDLPQLAEGAGPALVGGAPVAEFLRLEGDETLVCLCTLDE-----SSPGLALGTAQGVVK 638

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          R     + L   D I+      T E D++  T   Q +RFP SA+R   
Sbjct: 639 RVVPDYPAN--REELEVITLREGDRIVGAAELRTGEEDLVFITDDAQLLRFPASAVRA-Q 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GV G+ L +G +V+S  +V  A       +   +         +           
Sbjct: 696 GRPAGGVAGVKLTEGAKVLSFDVVDPAVDAAVFTVAGSRGTLDDSVQTT----------- 744

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                           K T    F    R+  G+R     K  +
Sbjct: 745 -------------------------------AKLTPFDQFPRKGRATGGVRCQRFLKGED 773



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 8/98 (8%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTL 862
           + +G  KR    D+   NR    +         E   +V    +    + ++ ++D   L
Sbjct: 632 TAQGVVKRV-VPDYPA-NREELEVITLR-----EGDRIVGAAELRTGEEDLVFITDDAQL 684

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +R P + +R   R   GV      +  +V+S + +  +
Sbjct: 685 LRFPASAVRAQGRPAGGVAGVKLTEGAKVLSFDVVDPA 722



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 83/271 (30%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ +Q   + +        D I S    T   ++   T  G
Sbjct: 522 DDPCRVLLSSTGVIARTPGTEPLQEGSAKRA-----KHDVIRSAVPATARGEVGAVTSAG 576

Query: 704 QCVRFPISAIRVFA-GRNSVGVRG------ISLAKGDQVISMAIVLHADADYDERICYMK 756
           + +R  +  +   A G     V G      + L   + ++ +  +  +            
Sbjct: 577 RLLRLTVVDLPQLAEGAGPALVGGAPVAEFLRLEGDETLVCLCTLDESSPGLALGTAQGV 636

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                    +   E       +             EL+  E+ ++ +++     R  +  
Sbjct: 637 VKRVVPDYPANREELEVITLREGDRIVG-----AAELRTGEEDLVFITDDAQLLRFPASA 691

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL--------IRV 865
            R   R   G+    +++      +++   V+      + +    +GTL           
Sbjct: 692 VRAQGRPAGGVAGVKLTEG---AKVLSFDVVDPAVDAAVFTVAGSRGTLDDSVQTTAKLT 748

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           P ++     RAT GV      K E  +S   
Sbjct: 749 PFDQFPRKGRATGGVRCQRFLKGEDCLSFAW 779


>gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88]
 gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88]
          Length = 959

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 300/942 (31%), Positives = 465/942 (49%), Gaps = 92/942 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  +  ++  I  + I + M  +YL YA  V   RA+PD+RDGLKPVHRRIL+G 
Sbjct: 1   MTKKKL--EIPKDNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGA 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ LI+G GN+GS+
Sbjct: 59  YKLAAFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL D+ KD V+   NY  + +EP VL +RYPN+LVNG  
Sbjct: 119 DGDSAAAMRYTEARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAF 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+DG +A IDN +ID   LM+ I+GPD PTG +++G+  +  A
Sbjct: 179 GIAVGLATNIPPHNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILIGKNSLLKA 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y  G G + +R  + IE+    R  IV+TE PY+ NK+ +L+ I+E+  EKR       I
Sbjct: 239 YENGIGKVSLRAKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYI 298

Query: 297 ADLRDESDRQGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE KR    +++      LY+ T +Q   S NMVAL   KPE   
Sbjct: 299 SDIRDESDRNGIRAVIEFKRSTDREIVEKTLKYLYKNTDMQINISFNMVALANGKPEVMG 358

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ++  +V  ++EVV RR++  L  A +R H++ G   A+  +DE+++ IR S + + A
Sbjct: 359 LKTMIYHYVEHQKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEA 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
            + L+ +                             ++VQ+ AILEL L RLTGL     
Sbjct: 419 SKNLIDK--------------------------FNFTKVQSEAILELMLYRLTGLEVTSF 452

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
           + E   L  +IK    IL     LL +IK EL  V+++    R+T I++      ++ ED
Sbjct: 453 KKEHKELEKKIKALKKILQHEEELLKVIKFELEEVREKYGDKRKTLIIKDDEKAKIDIED 512

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ E+ V+T+S  G+ KRV +  Y            +  R+ D+   L   ST  +VL 
Sbjct: 513 LIIDEETVITISKEGFCKRVSVKSYNRSNS---DIEDIEYREGDYNKFLLEGSTKDNVLI 569

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +Y  KV  +P    + RG  L   +          I  +   + +  N ++ F 
Sbjct: 570 FTNKGNMYSTKVINIPEKRWKDRGIRLDETIKTIDLNEEEIIDIYVVSKFTTQNDFI-FI 628

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRF 708
           T  G +++  L  F   N S  +A+KL   +E++ V+      +E  + L+TK+G     
Sbjct: 629 TSRGGIKKTSLDKFET-NYSKLMALKLREDEEVIDVKLMDKNREEKFLKLSTKMGLDFTI 687

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVI-------------SMAIVLHADADYDERI--- 752
               I     RN +     S+   D+VI             S+ +  +       R    
Sbjct: 688 EEPTINEED-RNILSNIFCSIGYKDKVIKSQFEDKNELAIFSLNVNKNGSIIKGNRKNKS 746

Query: 753 -------------------CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
                                +K      + + G    I  L      +  I      + 
Sbjct: 747 SINLEVDSNKKLLIFLKNGEVIKINCNMLQNLEGKAINIFDLLEKYEQKNEIINVLPFDY 806

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG--IRATDVSKINEIGALVAVFP--VND 849
             ++  I  +++ G  K+T   +F       +G           ++   ++ V     ++
Sbjct: 807 NDEDLEIYYLTKFGLVKKTLLKEF-------QGDYFITIGYKFRHKEDEIITVDFGKAHE 859

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              II++S+KG  IR   N I    +   GV+  +  K+++V
Sbjct: 860 EKDIIIISEKGMCIRFSKNSINPVGKIASGVMGINLKKEDKV 901


>gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 818

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 283/847 (33%), Positives = 415/847 (48%), Gaps = 94/847 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +       ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M 
Sbjct: 5   STKTPPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPVVL A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G  GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLGGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YTAGRGSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM 
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMA 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 --------------------------HFSLSEIQTQYILDTPLRRLTRFDRIELESERDK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI     IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LSGEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGAQIASVPLEVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A     +          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLART------ANAEPVEISEDARRTKHDVIVSAVAATARGDVGAVTSTGR 572

Query: 598 VYKEKVWRLPIGSPQARGKA------LINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP                +   LSL   E +  +    E     ++  +   
Sbjct: 573 MLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEADEELVCLTTLDE-----SSPGLAIG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R          +     + L   D ++   E  T E D++  T   Q +R+P 
Sbjct: 628 TLQGVVKRVVPDYPPN--KDELEVISLKDGDRVVGATELRTGEEDLVFITSDAQLLRYPA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +++R   GR + G+ G+ LA G +V+S   V  A       +                  
Sbjct: 686 ASVRP-QGRPAGGMAGVKLAAGAEVLSFTAVDPASEAIVFTVAGSHGTL----------- 733

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                     +  +LT       K T    +    R+  G+R  
Sbjct: 734 --------------------------DDSVLTS------KLTPFDQYPRKGRATGGVRCQ 761

Query: 831 DVSKINE 837
              K  +
Sbjct: 762 RFLKGED 768



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 85/271 (31%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ ++I+   +        D I+S    T   D+   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANAEPVEISEDARRT----KHDVIVSAVAATARGDVGAVTSTG 571

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS----LAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +      ++     G   IS    L   ++++ +  +  +           
Sbjct: 572 RMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEADEELVCLTTLDESSPGLAIGTLQG 631

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                         E       D       +     EL+  E+ ++ ++      R  + 
Sbjct: 632 VVKRVVPDYPPNKDELEVISLKDGDRVVGAT-----ELRTGEEDLVFITSDAQLLRYPAA 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL-------IRV 865
             R   R   G+    ++       +++   V+   + I+ +     GTL          
Sbjct: 687 SVRPQGRPAGGMAGVKLAAG---AEVLSFTAVDPASEAIVFTVAGSHGTLDDSVLTSKLT 743

Query: 866 PVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
           P ++     RAT GV        ++ +V   
Sbjct: 744 PFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 774



 Score = 51.3 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 52/180 (28%), Gaps = 15/180 (8%)

Query: 731 KGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           K D ++S         +          R+  +            +      +    S+E 
Sbjct: 548 KHDVIVSAVAATARGDVGAVTSTGRMLRLSVIDLPQLPNTHAEPNLSGGAQISEFLSLEA 607

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           +        L      +   + +G  KR    D+   N+    + +       +   +V 
Sbjct: 608 DEELVCLTTLDESSPGLAIGTLQGVVKRV-VPDYPP-NKDELEVISLK-----DGDRVVG 660

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
              +    + ++ ++    L+R P   +R   R   G+     A    V+S   +  +  
Sbjct: 661 ATELRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPASE 720


>gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus
           XylebKG-1]
          Length = 818

 Score =  638 bits (1646), Expect = e-180,   Method: Composition-based stats.
 Identities = 284/847 (33%), Positives = 415/847 (48%), Gaps = 94/847 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +       ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M 
Sbjct: 5   STKTPPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMN 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+ 
Sbjct: 65  EMGLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLG 124

Query: 122 G-DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EPVVL A YPN+LVNG  
Sbjct: 125 NDDPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVS 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G  GIK+A
Sbjct: 185 GIAVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLGGIKDA 244

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++
Sbjct: 245 YTAGRGSFKIRATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVK 304

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+
Sbjct: 305 DLTDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLE 364

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM 
Sbjct: 365 VYLDHRFEVVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMA 424

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT+ IL+  L RLT   R ++ +E + 
Sbjct: 425 --------------------------HFSLSEIQTQYILDTPLRRLTRFDRIELESERDK 458

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--RED 537
           L  EI     IL S + L  ++  EL +V  +  T RRT ++E          +    + 
Sbjct: 459 LSGEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGAQIASVPLEVADDP 518

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R       A     +          D +      +    V   +S G 
Sbjct: 519 CRVLLSSTGLLART------ANAEPVEISEDARRTKHDVIVSAVAATARGDVGAVTSTGR 572

Query: 598 VYKEKVWRLPIGSPQARGKA------LINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           + +  V  LP                +   LSL   E +  +    E     ++  +   
Sbjct: 573 MLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEADEELVCLTTLDE-----SSPGLAIG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R          +     + L   D I+   E  T E D++  T   Q +R+P 
Sbjct: 628 TLQGVVKRVVPDYPPN--KDELEVISLKDGDRIVGATELRTGEEDLVFITSDAQLLRYPA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +++R   GR + G+ G+ LA G +V+S   V  A       +                  
Sbjct: 686 ASVRP-QGRPAGGMAGVKLAAGAEVLSFTAVDPASEAIVFTVAGSHGTL----------- 733

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                     +  +LT       K T    +    R+  G+R  
Sbjct: 734 --------------------------DDSVLTS------KLTPFDQYPRKGRATGGVRCQ 761

Query: 831 DVSKINE 837
              K  +
Sbjct: 762 RFLKGED 768



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 85/271 (31%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ ++I+   +        D I+S    T   D+   T  G
Sbjct: 516 DDPCRVLLSSTGLLARTANAEPVEISEDARRT----KHDVIVSAVAATARGDVGAVTSTG 571

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS----LAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +      ++     G   IS    L   ++++ +  +  +           
Sbjct: 572 RMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEADEELVCLTTLDESSPGLAIGTLQG 631

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                         E       D       +     EL+  E+ ++ ++      R  + 
Sbjct: 632 VVKRVVPDYPPNKDELEVISLKDGDRIVGAT-----ELRTGEEDLVFITSDAQLLRYPAA 686

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL-------IRV 865
             R   R   G+    ++       +++   V+   + I+ +     GTL          
Sbjct: 687 SVRPQGRPAGGMAGVKLAAG---AEVLSFTAVDPASEAIVFTVAGSHGTLDDSVLTSKLT 743

Query: 866 PVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
           P ++     RAT GV        ++ +V   
Sbjct: 744 PFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 774



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 58/180 (32%), Gaps = 15/180 (8%)

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D ++S  A     D         M  +S        DT    +L   + +   +S E 
Sbjct: 548 KHDVIVSAVAATARGDVGAVTSTGRMLRLSVIDLPQLPDTHAEPNLSGGAQISEFLSLEA 607

Query: 790 CQEL------KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +EL            +   + +G  KR    D+   N+    + +       +   +V 
Sbjct: 608 DEELVCLTTLDESSPGLAIGTLQGVVKRV-VPDYPP-NKDELEVISLK-----DGDRIVG 660

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
              +    + ++ ++    L+R P   +R   R   G+     A    V+S   +  +  
Sbjct: 661 ATELRTGEEDLVFITSDAQLLRYPAASVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPASE 720


>gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
 gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20]
          Length = 820

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 287/889 (32%), Positives = 469/889 (52%), Gaps = 95/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG + +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQH--------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 413 -----------------GFTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  TPR T I   + +++ E    + +E++VVTV+  GYV
Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPE-----EIGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +     + +  I+     +        V  +K+G +++ ++++F   
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEM--IIGVFAYKEIDPLKNFVLISKNGMIKQTRMTEFEPW 628

Query: 669 N---RSGKIAMKLDSR-DEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V     T+E D+ L + L   +R+P++ +    G  + 
Sbjct: 629 RTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYPLNEV-PVVGPKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D +I+  +V                                         
Sbjct: 688 GVKAMNLKADDYLINGLLVYSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ ++++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVLITQRGAAKRMLAQEINQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +    +N Q+++ + KG    V  N+I I  R + G  I       ++
Sbjct: 756 YMGS-GENQQVLVTNQKGQSFEVITNQIPINDRTSNGSFIMDEKTGGQI 803



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 78/253 (30%), Gaps = 65/253 (25%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  T+ G V+R+ L  +          + +   D +L        + +LL T  G  + 
Sbjct: 506 VVTVTRDGYVKRSSLRSYGASKPEE---IGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +               L   D                                  
Sbjct: 563 RPVHELP-------------DLKWKD---------------------------------L 576

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                 ++   +  E  I     +E+   + F+L +S+ G  K+T   +F          
Sbjct: 577 GEHISQTVMTLAQDEMIIGVFAYKEIDPLKNFVL-ISKNGMIKQTRMTEFEP-------W 628

Query: 828 RATDVSK------INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKG 879
           R             +E   LV VF  +  ++  + LVS     +R P+NE+ +      G
Sbjct: 629 RTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYPLNEVPVVGPKAAG 688

Query: 880 VVIFSTAKDERVV 892
           V   +   D+ ++
Sbjct: 689 VKAMNLKADDYLI 701


>gi|260583814|ref|ZP_05851562.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
 gi|260158440|gb|EEW93508.1| DNA topoisomerase IV, A subunit [Granulicatella elegans ATCC
           700633]
          Length = 818

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 293/885 (33%), Positives = 461/885 (52%), Gaps = 92/885 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G    K++ 
Sbjct: 4   QQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMFVEGNTSEKQFR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ R++QDW LR +L+E  GN GS+DGDP AA RYTE
Sbjct: 64  KSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRDVLVEMHGNNGSMDGDPAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL DL K TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT IPT
Sbjct: 124 ARLSKISEELLRDLDKKTVDFVLNFDDTEEEPTVLPARFPNLLVNGATGISAGYATEIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +  ID+P   +  LM+ ++GPDFPTGA+I G   ++ AY TG+G +V+R 
Sbjct: 184 HNLGEVIDATIHTIDHPKATVKELMQFVKGPDFPTGAIIQGIDELEQAYETGKGKVVVRS 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G + QIVVTEIPY+VNKA +++KI E+   K+I  IA++RDESDR G ++VI
Sbjct: 244 KTSIEAIKGGKSQIVVTEIPYEVNKALLVKKIDEIRLNKKIEGIAEVRDESDRTGLQIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+A+ ILN L + T LQ  ++ NMVA++  +P +  L  IL +++A ++EV+ +R
Sbjct: 304 ELKKEANAEGILNYLLKNTELQINYNFNMVAIDARRPMQVGLKKILDSYIAHQKEVITKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LNKA+DR H++ GL  A++ LDEV+ +IR S + + A+ +L++             
Sbjct: 364 TQFDLNKAQDRLHIVDGLMKALSILDEVIALIRNSNDKKDAKEKLVE------------- 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                        T   +  Q  AI+ L+L RLT      ++ E   L   +     IL 
Sbjct: 411 -------------TYDFTMTQAEAIVSLQLYRLTNTDITILQEEKLDLNERVATLTSILK 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   LL ++KQEL  +K +  TPR T I      + +E E  I  E++ V  +  GY KR
Sbjct: 458 SEKTLLQVMKQELRELKKKYATPRLTEIQAEIKEIKIETEILIPEEEVYVVATKQGYYKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V    + +            +R+ D V  +  VST  S++ F+S G      V  +P   
Sbjct: 518 VSPRSFASSAPEEN-----GLREGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAK 572

Query: 611 PQARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            +  G  L   +SL   E I   ++   +   ++ +  VVF TK G V++  +++F    
Sbjct: 573 WKDVGHHLSQSISLATNEIILAGMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEFNTYR 632

Query: 670 ---RSGKIAMKLDSR-DEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                   A+KL +  DE++++E    QE +I + T  G  +R+ +S +    G  + GV
Sbjct: 633 GYKTRTSNAIKLKTATDEVVAIELVPNQEQEIFIVTHCGFGLRYELSEV-PVVGTVASGV 691

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + I+L K D V    +                                            
Sbjct: 692 KAINLRKDDFVAGAMVYSPESKVVSA---------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                              +++G  KR +  +  +  R+ +G+      K N    +V +
Sbjct: 718 ----------------FLATQRGSVKRFNVLEVSMLTRAKRGLMVLRELKNNPH-RVVYL 760

Query: 845 F-PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              ++   + ++VS  G +  +   ++ +  R + G  + + A  
Sbjct: 761 DGNISSKQEYVIVSTNGEMKEIRPMDLSLVDRTSNGSALLNDADG 805



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 68/174 (39%), Gaps = 9/174 (5%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI-------TSLKNDSSV 781
           L +GD+V+ +  V   D+                 +     +++        SL  +  +
Sbjct: 533 LREGDEVLLVQKVSTLDSLVLFTSKGNYLHLPVHEIPEAKWKDVGHHLSQSISLATNEII 592

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              + +E+      ++  ++  +++G  K+T+  +F  + R  K   +  +        +
Sbjct: 593 LAGMVKEKDSNDAYQDWTVVFFTKEGLVKQTAMNEFN-TYRGYKTRTSNAIKLKTATDEV 651

Query: 842 VAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           VA+  V N   +I +V+  G  +R  ++E+ +      GV   +  KD+ V   
Sbjct: 652 VAIELVPNQEQEIFIVTHCGFGLRYELSEVPVVGTVASGVKAINLRKDDFVAGA 705


>gi|125718047|ref|YP_001035180.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK36]
 gi|125497964|gb|ABN44630.1| ParC, putative [Streptococcus sanguinis SK36]
          Length = 816

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 453/887 (51%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ ++ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDSNTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R    +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFVATKLGQIKRVDRKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGTKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D +++  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLVAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E                           ++ N            
Sbjct: 747 AGPVFGEAVDFDLFTTE---------------------------AEAN------------ 767

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 768 -EEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813


>gi|327474465|gb|EGF19871.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK408]
          Length = 816

 Score =  638 bits (1645), Expect = e-180,   Method: Composition-based stats.
 Identities = 284/887 (32%), Positives = 451/887 (50%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDTVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ D+ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTDLILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIVGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETCVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L T+ G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E   G                                       
Sbjct: 747 AGPVFGEAVDFDLFTTEAEAG--------------------------------------- 767

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 768 -EEQILQVISNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETCVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTRNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|184155380|ref|YP_001843720.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
 gi|183226724|dbj|BAG27240.1| topoisomerase IV subunit A [Lactobacillus fermentum IFO 3956]
          Length = 825

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 275/741 (37%), Positives = 422/741 (56%), Gaps = 43/741 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 6   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 66  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 126 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 186 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 246 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RR
Sbjct: 306 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 366 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 413 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I +    L ++    +  ED++V VS  GY+KR
Sbjct: 460 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G        +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 520 SSIRSFKASEVGDN-----GLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ L   + L+  E I   M   + +        +FAT  G V+++ LSD+    +
Sbjct: 575 WKDTGEHLSQTIDLDDDEVIVKAMLLDKLDL---PGTFIFATSDGQVKQSALSDYQPGSR 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  +    G  + GV
Sbjct: 632 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDV-PVTGVRTAGV 690

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           R I+L + DQ++ +++    D
Sbjct: 691 RAINLKEDDQLVGISLAGDGD 711



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 16/212 (7%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADY 748
            E+ I+L +  G   R   S+IR F    +  V    L + D    +     + H     
Sbjct: 504 DEDVIVLVSAAGYIKR---SSIRSF---KASEVGDNGLREDDYPLLLEQTTTLSHLYMFT 557

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           ++     + +         DT E  S   D   +  I +    +        +  +  G 
Sbjct: 558 NQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIFATSDGQ 617

Query: 809 GKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIR 864
            K+++  D++  +R       A  + +      +V+V           ++ +S +G  +R
Sbjct: 618 VKQSALSDYQPGSRYKTHASVAIKLREG---AQVVSVDYFEPEQAGQSVLAISREGYALR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V ++ +    T GV   +  +D+++V +  
Sbjct: 675 FAVEDVPVTGVRTAGVRAINLKEDDQLVGISL 706



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 62/251 (24%)

Query: 647 YVVFATKHGN-----VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G      V     + +          + LD  + I+      + +     + 
Sbjct: 552 HLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIF 611

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  GQ  +  +S  +  +   +     I L +G QV+S+                    
Sbjct: 612 ATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVD------------------- 652

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E +   Q +L +S +G+  R +  D  
Sbjct: 653 -------------------------------YFEPEQAGQSVLAISREGYALRFAVEDVP 681

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           ++     G+RA ++ +      LV +    D D + LV+ +G    + V+++ + +RA +
Sbjct: 682 VTGVRTAGVRAINLKE---DDQLVGISLAGDGDHLGLVTQRGAFKEMAVSDLEVGARARR 738

Query: 879 GVVIF-STAKD 888
           G ++     K+
Sbjct: 739 GNLVLHRLKKN 749


>gi|227515150|ref|ZP_03945199.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
 gi|227086482|gb|EEI21794.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC
           14931]
          Length = 825

 Score =  637 bits (1644), Expect = e-180,   Method: Composition-based stats.
 Identities = 274/741 (36%), Positives = 422/741 (56%), Gaps = 43/741 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 6   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 66  KSAKAVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 125

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 126 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 185

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 186 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 246 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RR
Sbjct: 306 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 366 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 413 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 459

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I +    L ++    +  E+++V VS  GY+KR
Sbjct: 460 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEEVIVLVSAAGYIKR 519

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G        +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 520 SSIRSFKASEVGDN-----GLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 574

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ L   + L+  E I   M   + +        +FAT  G V+++ LSD+    +
Sbjct: 575 WKDTGEHLSQTIDLDDDEVIVKAMLLDKLDL---PGTFIFATSDGQVKQSALSDYQPGSR 631

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  +    G  + GV
Sbjct: 632 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDV-PVTGVRTAGV 690

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           R I+L + DQ++ +++    D
Sbjct: 691 RAINLKEDDQLVGISLAGDGD 711



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 16/212 (7%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADY 748
            E  I+L +  G   R   S+IR F    +  V    L + D    +     + H     
Sbjct: 504 DEEVIVLVSAAGYIKR---SSIRSF---KASEVGDNGLREDDYPLLLEQTTTLSHLYMFT 557

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           ++     + +         DT E  S   D   +  I +    +        +  +  G 
Sbjct: 558 NQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIFATSDGQ 617

Query: 809 GKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIR 864
            K+++  D++  +R       A  + +      +V+V           ++ +S +G  +R
Sbjct: 618 VKQSALSDYQPGSRYKTHASVAIKLREG---AQVVSVDYFEPEQAGQSVLAISREGYALR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V ++ +    T GV   +  +D+++V +  
Sbjct: 675 FAVEDVPVTGVRTAGVRAINLKEDDQLVGISL 706



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 62/251 (24%)

Query: 647 YVVFATKHGN-----VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G      V     + +          + LD  + I+      + +     + 
Sbjct: 552 HLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIF 611

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  GQ  +  +S  +  +   +     I L +G QV+S+                    
Sbjct: 612 ATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVD------------------- 652

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E +   Q +L +S +G+  R +  D  
Sbjct: 653 -------------------------------YFEPEQAGQSVLAISREGYALRFAVEDVP 681

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           ++     G+RA ++ +      LV +    D D + LV+ +G    + V+++ + +RA +
Sbjct: 682 VTGVRTAGVRAINLKE---DDQLVGISLAGDGDHLGLVTQRGAFKEMAVSDLEVGARARR 738

Query: 879 GVVIF-STAKD 888
           G ++     K+
Sbjct: 739 GNLVLHRLKKN 749


>gi|299783207|gb|ADJ41205.1| Topoisomerase IV subunit A [Lactobacillus fermentum CECT 5716]
          Length = 822

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 275/741 (37%), Positives = 422/741 (56%), Gaps = 43/741 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 183 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 243 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA++  +P R  L   L +++AF++EV+ RR
Sbjct: 303 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAIDDQRPVRVGLKHYLASYLAFQKEVITRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 363 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 410 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I +    L ++    +  ED++V VS  GY+KR
Sbjct: 457 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G        +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 517 SSIRSFKASEVGDN-----GLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ L   + L+  E I   M   + +        +FAT  G V+++ LSD+    +
Sbjct: 572 WKDTGEHLSQTIDLDDDEVIVKAMLLDKLDL---PGTFIFATSDGQVKQSALSDYQPGSR 628

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  +    G  + GV
Sbjct: 629 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDV-PVTGVRTAGV 687

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           R I+L + DQ++ +++    D
Sbjct: 688 RAINLKEDDQLVGISLAGDGD 708



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 16/212 (7%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADY 748
            E+ I+L +  G   R   S+IR F    +  V    L + D    +     + H     
Sbjct: 501 DEDVIVLVSAAGYIKR---SSIRSF---KASEVGDNGLREDDYPLLLEQTTTLSHLYMFT 554

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           ++     + +         DT E  S   D   +  I +    +        +  +  G 
Sbjct: 555 NQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIFATSDGQ 614

Query: 809 GKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIR 864
            K+++  D++  +R       A  + +      +V+V           ++ +S +G  +R
Sbjct: 615 VKQSALSDYQPGSRYKTHASVAIKLREG---AQVVSVDYFEPEQAGQSVLAISREGYALR 671

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V ++ +    T GV   +  +D+++V +  
Sbjct: 672 FAVEDVPVTGVRTAGVRAINLKEDDQLVGISL 703



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 62/251 (24%)

Query: 647 YVVFATKHGN-----VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G      V     + +          + LD  + I+      + +     + 
Sbjct: 549 HLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIF 608

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  GQ  +  +S  +  +   +     I L +G QV+S+                    
Sbjct: 609 ATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVD------------------- 649

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E +   Q +L +S +G+  R +  D  
Sbjct: 650 -------------------------------YFEPEQAGQSVLAISREGYALRFAVEDVP 678

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           ++     G+RA ++ +      LV +    D D + LV+ +G    + V+++ + +RA +
Sbjct: 679 VTGVRTAGVRAINLKE---DDQLVGISLAGDGDHLGLVTQRGAFKEMAVSDLEVGARARR 735

Query: 879 GVVIF-STAKD 888
           G ++     K+
Sbjct: 736 GNLVLHRLKKN 746


>gi|260662107|ref|ZP_05863003.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553490|gb|EEX26382.1| DNA topoisomerase IV, A subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 822

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 276/741 (37%), Positives = 422/741 (56%), Gaps = 43/741 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DTRIEELTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L+D+ KDTV+   N+D + +EPVVL AR PN+ VNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGRMLEDIDKDTVEMTLNFDDTEKEPVVLPARIPNLFVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGE++D  + ++ +P   LD LM+ + GPDFPTGA+I G+ GIK AY TGRG +V+R 
Sbjct: 183 HNLGELIDALIYLLAHPAASLDDLMKFVPGPDFPTGAIIQGKDGIKKAYETGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G REQIVVTEIPY+VNKA ++++I +L   K++  IAD RDE+DR G R+ I
Sbjct: 243 KTSIETLRGGREQIVVTEIPYEVNKAQLMKRITDLRLNKKVEGIADARDETDRTGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRG  A  +LN L + T LQ  ++ NMVA+N  +P R  L   L +++AF++EV+ RR
Sbjct: 303 ELKRGVDAQGVLNYLLKNTDLQINYNFNMVAINDQRPVRVGLKHYLASYLAFQKEVITRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L +A+ R H++ GL  A++ LD+V+  IR S N + A++ L+              
Sbjct: 363 TRFDLRRAQSRLHIVEGLIKALSILDQVIATIRASKNRKDAQQNLVA------------- 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT      +  E   L   I+    IL+
Sbjct: 410 -------------AYDFTPTQAEAIVALQLYRLTNTDVTALEQEQAKLTERIENFKRILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++K+E+ ++K E   PRRT+I +    L ++    +  ED++V VS  GY+KR
Sbjct: 457 DEKTLDRVLKREMQAIKKEFANPRRTQIEDTVQKLTVDTRVTVADEDVIVLVSAAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A   G        +R++D+   L   +T + +  F++ G      V  L    
Sbjct: 517 SSIRSFKASEVGDN-----GLREDDYPLLLEQTTTLSHLYMFTNQGRFIYRPVHELTDAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ L   + L+  E I   M   + +        +FAT  G V+++ LSD+    +
Sbjct: 572 WKDTGEHLSQTIDLDDDEVIVKAMLLDKLDL---PGTFIFATSDGQVKQSALSDYQPGSR 628

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    +++SV+    E     +L  ++ G  +RF +  +    G  + GV
Sbjct: 629 YKTHASVAIKLREGAQVVSVDYFEPEQAGQSVLAISREGYALRFAVEDV-PVTGVRTAGV 687

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           R I+L + DQ++ +++    D
Sbjct: 688 RAINLKEDDQLVGISLAGDGD 708



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 16/212 (7%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADY 748
            E+ I+L +  G   R   S+IR F    +  V    L + D    +     + H     
Sbjct: 501 DEDVIVLVSAAGYIKR---SSIRSF---KASEVGDNGLREDDYPLLLEQTTTLSHLYMFT 554

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           ++     + +         DT E  S   D   +  I +    +        +  +  G 
Sbjct: 555 NQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIFATSDGQ 614

Query: 809 GKRTSSYDFRISNRS-GKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIR 864
            K+++  D++  +R       A  + +      +V+V           ++ +S +G  +R
Sbjct: 615 VKQSALSDYQPGSRYKTHASVAIKLREG---AQVVSVDYFEPEQAGQSVLAISREGYALR 671

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             V ++ +    T GV   +  +D+++V +  
Sbjct: 672 FAVEDVPVTGVRTAGVRAINLKEDDQLVGISL 703



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 62/251 (24%)

Query: 647 YVVFATKHGN-----VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G      V     + +          + LD  + I+      + +     + 
Sbjct: 549 HLYMFTNQGRFIYRPVHELTDARWKDTGEHLSQTIDLDDDEVIVKAMLLDKLDLPGTFIF 608

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  GQ  +  +S  +  +   +     I L +G QV+S+                    
Sbjct: 609 ATSDGQVKQSALSDYQPGSRYKTHASVAIKLREGAQVVSVD------------------- 649

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                            E +   Q +L +S +G+  R +  D  
Sbjct: 650 -------------------------------YFEPEQAGQSVLAISREGYALRFAVEDVP 678

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           ++     G+RA ++ +      LV +    D D + LV+ +G    + V+++ + +RA +
Sbjct: 679 VTGVRTAGVRAINLKE---DDQLVGISLAGDGDHLGLVTQRGAFKEMAVSDLEVGARARR 735

Query: 879 GVVIF-STAKD 888
           G ++     K+
Sbjct: 736 GNLVLHRLKKN 746


>gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           11379]
 gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
 gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL
           15998]
          Length = 818

 Score =  637 bits (1643), Expect = e-180,   Method: Composition-based stats.
 Identities = 280/840 (33%), Positives = 411/840 (48%), Gaps = 84/840 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 ++ E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPVHRRI+  M +M
Sbjct: 6   TKTPPPDDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+RL L++G GNFGS+   
Sbjct: 66  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF+ NYDG  +EP VL A YPN+LVNG  GI
Sbjct: 126 DPPAAMRYTECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I +P  D++ LM  + GPD PTG  I+G TGIK+AY 
Sbjct: 186 AVGMATNMPPHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIVGLTGIKDAYT 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRGS  IR    +E  +  R+ +VVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 AGRGSFKIRATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDRAHGLRLVIEVKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RR+++   K RDR H++ GL +A+ ++DEV+RIIR S N   A+  LM   
Sbjct: 366 LDHRFEVVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMA-- 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+QT+ IL+  L RLT   R ++ +E + L 
Sbjct: 424 ------------------------HFSLSEIQTQYILDTPLRRLTRFDRIELESERDKLN 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI     IL S + L  ++  EL +V  +  T RRT ++E          +    +   
Sbjct: 460 GEIDALTAILESDAELRKLVSSELAAVAKKFGTDRRTVLLESAGSQIASVPLEVADDPCR 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R       A     +          D +      +    V   +S G + 
Sbjct: 520 VLLSSTGLLART------ANAEPVEISEDARRTKHDVIVSAVAATARGDVGAVTSTGRLL 573

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATKHGNVR 658
           +  V  LP          L     +++   +            + ++  +   T  G V+
Sbjct: 574 RLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEADEELICLTTLAEDSPGLAIGTLQGVVK 633

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          +     + L   D I+   E  T E D++  T   Q +R+P  ++R   
Sbjct: 634 RVVPDYPAN--KDELEVITLKDGDRIVGATELRTGEEDLVFITSDAQLLRYPAGSVRP-Q 690

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + G+ G+ LA G +V+S   V  A       +                         
Sbjct: 691 GRPAGGMAGVKLAAGAEVLSFTAVDPAADAVVFTVAGSHGTL------------------ 732

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                              +  +LT       K T    +    R+  G+R     K  +
Sbjct: 733 -------------------DDSVLTS------KLTPFDQYPRKGRATGGVRCQRFLKGED 767



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 57/178 (32%), Gaps = 15/178 (8%)

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           K D ++S  A     D         +  +S        DT    +L   + +   ++ E 
Sbjct: 547 KHDVIVSAVAATARGDVGAVTSTGRLLRLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEA 606

Query: 790 CQEL------KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
            +EL            +   + +G  KR    D+   N+    +         +   +V 
Sbjct: 607 DEELICLTTLAEDSPGLAIGTLQGVVKRV-VPDYPA-NKDELEVITLK-----DGDRIVG 659

Query: 844 VFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
              +    + ++ ++    L+R P   +R   R   G+     A    V+S   +  +
Sbjct: 660 ATELRTGEEDLVFITSDAQLLRYPAGSVRPQGRPAGGMAGVKLAAGAEVLSFTAVDPA 717



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 31/271 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ ++I+   +        D I+S    T   D+   T  G
Sbjct: 515 DDPCRVLLSSTGLLARTANAEPVEISEDARRT----KHDVIVSAVAATARGDVGAVTSTG 570

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGI----SLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +      ++     G   I    +L   +++I +  +              
Sbjct: 571 RLLRLSVIDLPQLPDTHAEPNLSGGAQISEFLTLEADEELICLTTLAEDSPGLAIGTLQG 630

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                     +   E       D       +     EL+  E+ ++ ++      R  + 
Sbjct: 631 VVKRVVPDYPANKDELEVITLKDGDRIVGAT-----ELRTGEEDLVFITSDAQLLRYPAG 685

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKGTL-------IRV 865
             R   R   G+    ++       +++   V+     ++ +     GTL          
Sbjct: 686 SVRPQGRPAGGMAGVKLAAG---AEVLSFTAVDPAADAVVFTVAGSHGTLDDSVLTSKLT 742

Query: 866 PVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
           P ++     RAT GV        ++ +V   
Sbjct: 743 PFDQYPRKGRATGGVRCQRFLKGEDVLVFAW 773


>gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
 gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris
           ATCC 700780]
          Length = 823

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 284/887 (32%), Positives = 457/887 (51%), Gaps = 87/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   ++ LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     ++  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +  TPR + + +   +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 ERTLYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTVSLIAEEETYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +    +  T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKREDDRLIFTQVAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVVD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D+LL +K G  +RF I  +    G  + GV+ ++
Sbjct: 629 KSKSVKYAKLKDDSDQIVAVAPIKLDDVLLISKNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++              +        S       G  + +++ +  ++       +
Sbjct: 688 LKADDEI--------------QVAFICNTSSFYLLTQRGSLKRVSTEEIPATSRAKRGLQ 733

Query: 789 RCQELKLKEQFIL---TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
             +ELK K   +    TVSE+GF                             IG L +  
Sbjct: 734 VLRELKNKPHRVFLAGTVSEQGF-----------------------------IGDLFS-T 763

Query: 846 PVNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            V D DQ ++V S+KG +    + ++ ++ R + G  I  T  DE V
Sbjct: 764 EVEDGDQTLVVQSNKGIIYETILQDLNLSERTSNGSFISETISDEEV 810


>gi|328946256|gb|EGG40400.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1087]
          Length = 816

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 450/887 (50%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TIEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L T+ G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E                                           
Sbjct: 747 AGPVFGEAVDFDLFTTE----------------------------------------AEA 766

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             DQI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 767 SEDQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813



 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 76/558 (13%), Positives = 165/558 (29%), Gaps = 37/558 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I     +   
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIILARSRFDKAKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +     +              V  T+ G ++R   
Sbjct: 464 KRELRDVKKKFGNP------RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          M     D ++ V        +L+ T LG  +  P+  +     +   
Sbjct: 518 RSFSASTIEE---MGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIG 574

Query: 723 GV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               + I +    ++VI   ++   +         +  +    R          S     
Sbjct: 575 EHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKF 634

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +   N  ++      +K   ++ V+  G+  R +  +  +      G++A ++ K     
Sbjct: 635 AKLKNEDDQVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKK----D 690

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
            ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V      
Sbjct: 691 DVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFAAGPV 750

Query: 899 ESEIVD------EAESTE 910
             E VD      EAE++E
Sbjct: 751 FGEAVDFDLFTTEAEASE 768


>gi|116670188|ref|YP_831121.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
 gi|116610297|gb|ABK03021.1| DNA topoisomerase IV subunit A [Arthrobacter sp. FB24]
          Length = 832

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 287/851 (33%), Positives = 414/851 (48%), Gaps = 100/851 (11%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + ++  + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+ 
Sbjct: 12  DAVQDYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSEMGLR 71

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            ++ +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D D PA
Sbjct: 72  PDRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD-DGPA 130

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL  AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  GIAVGM
Sbjct: 131 APRYTEARLAAAALSLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATGIAVGM 190

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATN+  HNL EV+     +I NP+  L+ LM  + GPD PTG  I+G  GI++AYATGRG
Sbjct: 191 ATNMAPHNLVEVISAARHLIANPEATLEDLMRFVPGPDLPTGGRIVGLDGIRDAYATGRG 250

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR- 305
           S   R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D +DR 
Sbjct: 251 SFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNGKKLTGISDIVDLTDRK 310

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L  +V  R
Sbjct: 311 HGLRLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLLSVYVDHR 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM       
Sbjct: 371 INVVRRRTAFRLEKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEVSAARERLMS------ 424

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L+E+Q   ILELRL +LT   R ++  E + L  EI 
Sbjct: 425 --------------------IYDLTEIQANYILELRLRQLTKYSRIELEKEQDQLKREIA 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC------------- 532
           E   IL S  RL  ++  EL  + ++  TPRRT ++E                       
Sbjct: 465 ELEAILGSDQRLRELVSDELGEIAEKYGTPRRTVLLESEAVSPTVAALAAARGGKGKAAP 524

Query: 533 ----IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
               I  +     ++  G + R          +     SG   + + F   +   S    
Sbjct: 525 LALEIADDPCWAILTASGQIAR-------TSNQEPLTESGPRSKHDVF-RSVVKTSARGE 576

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +   +SLG + + +V  +P+  P +    L   +       +              +  +
Sbjct: 577 IAAVTSLGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKDFITLLKGETLVAFAPL--DTVL 634

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVR 707
              T  G V+R +    +       IA  L  +D ++ VE    ++ D++  T+  Q +R
Sbjct: 635 AIGTAQGIVKRVQPDYPLNREDWEVIA--LKDKDTVVGVEPAGADDVDLVFLTRQAQLLR 692

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  + +R   GR + G+ GI L  GDQV+    V   D D           +        
Sbjct: 693 FSAANVRP-QGRTAGGMAGIKLGAGDQVLFFGTVAPGDEDAVVVTVSGTEGALPG----- 746

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                               +  G GK T+  ++    R+  G+
Sbjct: 747 ------------------------------------TAPGAGKVTAFAEYPPKGRATAGV 770

Query: 828 RATDVSKINEI 838
           RA    K  + 
Sbjct: 771 RAHRFLKGEDT 781



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            +     + +            +L + + +G  KR    D+ + NR    + A       
Sbjct: 611 PAKDFITLLKGETLVAFAPLDTVLAIGTAQGIVKRVQP-DYPL-NREDWEVIALK----- 663

Query: 837 EIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +   +V V P   +D  ++ ++ +  L+R     +R   R   G+        ++V+   
Sbjct: 664 DKDTVVGVEPAGADDVDLVFLTRQAQLLRFSAANVRPQGRTAGGMAGIKLGAGDQVLFFG 723

Query: 896 RIRESEIV 903
            +   +  
Sbjct: 724 TVAPGDED 731



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 86/270 (31%), Gaps = 40/270 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++      T  G + R    + +  +            D   SV   +   +I   T LG
Sbjct: 531 DDPCWAILTASGQIARTSNQEPLTESGPRS------KHDVFRSVVKTSARGEIAAVTSLG 584

Query: 704 QCVRFPISA---IRVFAGRN--SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +     +   +G    + GV     I+L KG+ +++ A          + +  +
Sbjct: 585 RMLRLQVMDMPVLPPMSGLPNLAGGVPAKDFITLLKGETLVAFA--------PLDTVLAI 636

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           +++   +    +     +  ++ ++ +    R S+ 
Sbjct: 637 GTAQGIVKRVQPDYPLNREDWEVIALKDKDTVVGVEPAGADDVDLVFLTRQAQLLRFSAA 696

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS-------------DKGTL 862
           + R   R+  G+    +   +++  L        ++  ++V+               G +
Sbjct: 697 NVRPQGRTAGGMAGIKLGAGDQV--LFFGTVAPGDEDAVVVTVSGTEGALPGTAPGAGKV 754

Query: 863 IRVPVNEIRIASRATKGVVIFS-TAKDERV 891
                 E     RAT GV        ++ +
Sbjct: 755 --TAFAEYPPKGRATAGVRAHRFLKGEDTL 782


>gi|218437924|ref|YP_002376253.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
 gi|218170652|gb|ACK69385.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 7424]
          Length = 848

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 281/833 (33%), Positives = 434/833 (52%), Gaps = 81/833 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EM+ SYL YA++VI+GRA+PD+RDG+KPVHRRI++ M ++G+  ++ Y KC
Sbjct: 12  QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YDAL RM Q++S R  L+ G GNFGSVD DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETR 131

Query: 135 LQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       +L ++ +  VDF  N+D S QEPVVL A+ P +L+NG  GIAVGMATNIP H
Sbjct: 132 LAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+ID P +  + L EII GPDFPTG  I+   GIK AY TG+G I ++GV
Sbjct: 192 NLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEGIKEAYRTGKGIIPVQGV 251

Query: 254 SHIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +H+E  S       +R  IVVTE+PYQVNK+  +EK+A+LV + R+  IAD+RDESDRQG
Sbjct: 252 THVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR      +L  LY+ T+LQS F V ++AL   KP + +L  +L+ F+ FRE+
Sbjct: 312 MRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLALVDNKPCQLSLRELLEEFLNFREQ 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+ ++ L +A+ R H+L GL IA+ NLD+V+ I+R +P+  TA+++  +        
Sbjct: 372 TLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + +SE Q  +IL + + RLTGL +  ++ E   L   I + 
Sbjct: 425 -------------------LTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED---------------- 531
             +L+ R  L+  +K++L ++K +    RRTRIV         +                
Sbjct: 466 QVLLNDRIELMKSLKKDLRALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTT 525

Query: 532 ---------------------CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
                                    +D V+T++  GY+     + + +           +
Sbjct: 526 TPSKSSEPKAKDSSSLSLFTPQPPPKDAVLTITEQGYIYWQSAAEFNSISS--------I 577

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  DF      +    S++  +  G  Y      +P    +++  +L+N+L  +  +  
Sbjct: 578 KKGTDFPIYTQRIQQQDSLIVITDQGKAYPVSGSEIP--PQESQPCSLLNLLPNSVQKNS 635

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
             I  +       N   ++  T  G ++R  +S+  QI   G   +KL   D +  +   
Sbjct: 636 QKIASYFLFPQQKNLSELILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDDRLGYLSLT 695

Query: 691 TQENDILLTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           ++ +++ + T  G+ +R      +    GRN+ G + + L  G+ ++        D    
Sbjct: 696 SESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGNQALRLRYGENIVGCVTPKIDDNLLL 755

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                         L      EI ++    S + +           KE  ++T
Sbjct: 756 ITQSGYGKRIPVNSLRITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILVT 808



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 65/204 (31%), Gaps = 12/204 (5%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            ++ +L  T+ G       +     +         I   +  Q  S+ ++      Y   
Sbjct: 550 PKDAVLTITEQGYIYWQSAAEFNSISSIKKGTDFPIYTQRIQQQDSLIVITDQGKAYPVS 609

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +    +Q   +           +       +      + K   + IL ++ +G  KR
Sbjct: 610 GSEIPPQESQPCSLLNLLPNSVQKNSQKIASYFL----FPQQKNLSELIL-LTGQGRIKR 664

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR--VPVNE 869
            S  +        +G+    +   + +G L      +++ ++ + ++ G ++R      +
Sbjct: 665 LSMSELEQI--GNRGLSLIKLKDDDRLGYL---SLTSESHEVAIATNGGRVLRLTTRDEQ 719

Query: 870 IRIASRATKGVVIFSTAKDERVVS 893
           I +  R  +G         E +V 
Sbjct: 720 IPLMGRNAQGNQALRLRYGENIVG 743


>gi|70726554|ref|YP_253468.1| DNA topoisomerase IV subunit A [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447278|dbj|BAE04862.1| topoisomerase IV subunit A [Staphylococcus haemolyticus JCSC1435]
          Length = 799

 Score =  637 bits (1642), Expect = e-180,   Method: Composition-based stats.
 Identities = 282/879 (32%), Positives = 456/879 (51%), Gaps = 101/879 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A+ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTKY
Sbjct: 305 KDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + NE N L   IKE   IL +  
Sbjct: 410 -----------FEFTEAQAEAIVMLQLYRLTNTDIVALENEHNELANLIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I      + ++ E  +  ED+V++++  GY+KR   
Sbjct: 459 ALLQVIKSELTDIRKRFKSERLSSIEAEIAEIKIDKEVMVPSEDVVLSITRQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + V ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEVGLKDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ L+  E +   +    ++S  ++ + V AT++G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPLDDYETV---VDVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKP 630

Query: 674 I-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + AMK+   DE+++V    ++  I + T  G  + +    +    G  + GV+ I+L   
Sbjct: 631 LVAMKVKDNDELINVIRLNEDQLISVLTHKGMSLTYSSEEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V    +                                              
Sbjct: 690 DFVVMTDVVDSDSS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+  +++G  KR S    + + R+ +GI      K N    +VA + V D   
Sbjct: 704 -------IIMATQRGAVKRISYKILQQAKRAQRGITLLKELKKNPH-RVVAGYVVKDESM 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAK 887
             L S+     G +      +I ++ + T G  +    +
Sbjct: 756 YTLYSESHSEEGQI-----TDIHLSEQYTNGSFVVDVKE 789



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 81/222 (36%), Gaps = 16/222 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E+ +L  T+ G   R   ++ R F   N+ GV  + L  GD ++    V
Sbjct: 493 DKEVMVP---SEDVVLSITRQGYIKR---TSTRSF---NASGVTEVGLKDGDSLLKYQTV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S          + +   ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVVDVYNEQSFKDDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  +  G  K+++   F+ + R  K + A  V        L+ V  +N++  I +++ 
Sbjct: 604 FYVLATRNGMIKKSNVSLFKTT-RYNKPLVAMKVKD---NDELINVIRLNEDQLISVLTH 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           KG  +     E+        GV   +   ++ VV  + +   
Sbjct: 660 KGMSLTYSSEELSDTGLRAAGVKSINLKDEDFVVMTDVVDSD 701


>gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
 gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM
           12042]
          Length = 849

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 293/926 (31%), Positives = 457/926 (49%), Gaps = 108/926 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +    + E+E   + S  + + M   +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MKKKENKAPEKEPSLVIS-PLEEIMGERFGRYSKYIIQERALPDARDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G  ++ ++ K A+  G V+G YHPHG++++YDA+ RM+QDW +R+ LI+  GN GS+
Sbjct: 60  FHDGNTFDHQHRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL K A  LL+D+ KDTV F PN+D +  EP VL AR+P +LVNG  
Sbjct: 120 DDDPAAAMRYTEARLAKIAGTLLEDIDKDTVLFAPNFDDTENEPTVLPARFPVLLVNGAT 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATNIP HNL EV+D  +  +  P   L+ LMEI+ GPDFPTG +++G+ GI +A
Sbjct: 180 GIAAGYATNIPPHNLSEVIDAAIYRMQRPKCSLEELMEILPGPDFPTGGIVMGKKGIVDA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TG+G +VIR  + I        QI++ EIPY+V K++M+ K+ ++   + I  I D+R
Sbjct: 240 FTTGKGRVVIRARTEIVTGKT-CNQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+VI++K+ A  +VILN  Y+ T LQ  +S NMV++   +P +  LIG+L A
Sbjct: 299 DETDRTGLRIVIDVKKDADPNVILNYFYKNTDLQIYYSYNMVSIVNKRPVQMGLIGMLDA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A REEVV+RR++YL NK  +R H+L GL  AV+ +DEV+ +IR S +   A+R L + 
Sbjct: 359 FIAHREEVVLRRSRYLYNKMEERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTE- 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                    +   SE Q  AI+ LRL RLT      +R E   L
Sbjct: 418 -------------------------SFGFSETQAEAIVTLRLYRLTSTDIVALREEFAQL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDM 538
             E++    IL S + L  ++ +EL  +K E   PRR+ I   + +  ++    I  E +
Sbjct: 453 VNEMEMLKTILESETVLKSVLIKELREIKKEYADPRRSEIQAEVEEIVIDKTAMIPNERV 512

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++T S  GYVKRV L  Y     G    +   +++ D +     V T  ++L F+S G  
Sbjct: 513 MITASRDGYVKRVSLRSY-----GASDNAMTGLKEGDVLVGQLEVDTLDTLLLFTSKGNY 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L   +S++  ++I   +      S     ++V  ++ G V+
Sbjct: 568 AHLPVYQIDEAKWKDVGSHLNKYVSIDGDDKIINAIVVKNFSSY---AWIVTVSRRGQVK 624

Query: 659 RNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  +S +     +  + AM L   DE++         D+++ ++ G   R+  S +    
Sbjct: 625 KTPISQWQVQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRSGWISRYS-SDLVPAN 683

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  S GV+ ++LAK D + +                                        
Sbjct: 684 GTKSQGVKALNLAKDDTLAAAC-------------------------------------- 705

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                             + Q +  +S+KG  KR    D  ++ R  KG       K N 
Sbjct: 706 --------------SYSDERQSLWVLSDKGNMKRIKMSDINVTGRPVKGEIVVKRLKTNP 751

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--------- 888
              +     V   D ++L+     L  +   ++ + SR           KD         
Sbjct: 752 Y-HIAYCQCVQPYDSLMLMDP--QLQILQAKDVPMMSREATFSTPLELKKDWGLIKGIEE 808

Query: 889 ----ERVVSVERIRESEIVDEAESTE 910
               +  V  + I   +  +E+E+ E
Sbjct: 809 VRIVDHPVGEDEIPFEDYDEESEADE 834


>gi|269836114|ref|YP_003318342.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
 gi|269785377|gb|ACZ37520.1| DNA topoisomerase (ATP-hydrolyzing) [Sphaerobacter thermophilus DSM
           20745]
          Length = 813

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 275/908 (30%), Positives = 456/908 (50%), Gaps = 107/908 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + ++  EE   I +   +   +++++ YA+ V+  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MATTVYTNGHEET--IETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   N+  VK A + G+V+  YHPHG++A+YDA  RMAQD+++R  LIEGQGNFGS+
Sbjct: 59  YENGHRSNRPTVKSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG--SFQEPVVLCARYPNVLVNG 178
           DGD  AA RYTE RL      LL D+ ++TV F   Y    +  +PV L AR P +  N 
Sbjct: 119 DGDAAAAYRYTEMRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPI-CNP 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T+IP HNL E +   +A++DNP++ +D LM+I+ GPDFPTG  I+G  GI+
Sbjct: 178 SSGIAVGLSTDIPPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGTDGIR 237

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
               +G+G +VIRG   +E+    +  +VVTEIP  ++++ ++  I   V + ++  + D
Sbjct: 238 AYLESGKGRLVIRGEVRLEE-ELRQRNLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTD 295

Query: 299 LRDES-DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN------GYKPER 351
           +R+ES D +G R+V+EL+R A+ +V+LNQLYR+T LQ+  +VNMV L         +P R
Sbjct: 296 VRNESDDEKGTRIVVELERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRR 355

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             ++ +L+ +   + +V+ RR +Y L KA++R HV+ GL I  A+ DE+VRI + + +  
Sbjct: 356 TGMLDLLRYWNRHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRN 415

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A+ ++                               L+++Q   I  + LA++T L   
Sbjct: 416 VAKEKI--------------------------KVKYNLTDIQADVIANMTLAQVTRLDAA 449

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMED 529
               E   L   IKE   +L+S ++ + ++K+EL ++  E    RRTRI           
Sbjct: 450 KYAEEKKELTKRIKELQALLASEAKKVALLKEELTAIAQEHGDDRRTRIDREGQEEIASV 509

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
              I    +++  S  G VK +P + ++  R G            + +  +   ST   +
Sbjct: 510 ASLIEERPILIVASQSGRVKALPENAFKRARAG-------RTARGEGLAAIVPASTLDYL 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  +  G VY  +   +P G+  + G+    +  L   E + TI+P  E      + YVV
Sbjct: 563 LVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPDEALATILPVNELT---EDRYVV 619

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           + T +G V++  L+++  I  +G   ++L   D +++        + L+    GQ +RF 
Sbjct: 620 WFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFA 679

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR+  GV  I+L  G +V++   +                            
Sbjct: 680 DDEVRA-TGRDGQGVNAIALKAGAEVVTALAIPP-------------------------- 712

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      +  +L V+ +G GKRT+  DF    R+  G+ A
Sbjct: 713 -------------------------KSDGDVLVVTAQGMGKRTALKDFPARRRATAGVAA 747

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++   +   +     V  +D ++L +  G  ++V V ++R   RATKG  +   AK++
Sbjct: 748 ITLA---KGDRIAGAALVTPDDDVVLGAAGGQALQVTVKDLRRQGRATKGSRLLEVAKND 804

Query: 890 RVVSVERI 897
            V ++ R+
Sbjct: 805 HVATIARV 812



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 16/261 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ A++ G V+    + F +       A +    + + ++   +  + +L+ T+ G+   
Sbjct: 519 LIVASQSGRVKALPENAFKRAR-----AGRTARGEGLAAIVPASTLDYLLVLTRGGRVYL 573

Query: 708 FPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                +     R S G    +   L   + +    I+   +   D  + +       ++ 
Sbjct: 574 SRGHEVPAGT-RASSGEPAQKVFGLKPDEAL--ATILPVNELTEDRYVVWFTANGKVKKT 630

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
              +   ITS   +              L       L ++  G   R +  + R + R G
Sbjct: 631 SLAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEYLVIASNGQALRFADDEVRATGRDG 690

Query: 825 KGIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +G+ A  +        +V    +    +  +++V+ +G   R  + +     RAT GV  
Sbjct: 691 QGVNAIALKAG---AEVVTALAIPPKSDGDVLVVTAQGMGKRTALKDFPARRRATAGVAA 747

Query: 883 FSTAKDERVVSVERIRESEIV 903
            + AK +R+     +   + V
Sbjct: 748 ITLAKGDRIAGAALVTPDDDV 768



 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 83/246 (33%), Gaps = 27/246 (10%)

Query: 674 IAMKLDSRDEILSVETCTQENDI-------------LLTTKLGQCVRFPISAI-RVFAGR 719
            A+  +  D+  +      + +I             ++ ++ G+    P +A  R  AGR
Sbjct: 484 TAIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQSGRVKALPENAFKRARAGR 543

Query: 720 NSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + G       +G   ++  + + +          Y+             + E       
Sbjct: 544 TARG-------EGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFG 596

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
              +  ++         ++++++  +  G  K+TS  ++R    +G      +  ++   
Sbjct: 597 LKPDEALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAG-----LNDLRLLGD 651

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             +VA        + ++++  G  +R   +E+R   R  +GV   +      VV+   I 
Sbjct: 652 DRVVAATLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIP 711

Query: 899 ESEIVD 904
                D
Sbjct: 712 PKSDGD 717


>gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
 gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis
           ATCC 700641]
          Length = 817

 Score =  636 bits (1641), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/891 (32%), Positives = 454/891 (50%), Gaps = 81/891 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  +L  +I     I+  
Sbjct: 406 ----------KISYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG      V  L     
Sbjct: 516 SPRSFNAS-----TVEEVGKRDDDELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL---SDFIQI 668
           +  G+ L   L+  + E     + F E    +  +    AT+ G ++R +    S +   
Sbjct: 571 KDIGEHLSQTLTNFEQEEE---ILFAEIVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL  +++ +         DI++ TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 RSKSTKYAKLKDQEDRIIAVAPVVLEDIMIITKNGYGLRFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GDQV ++            +   +K MS     ++   +    +  +   + +   +
Sbjct: 687 LKDGDQVAAVFKSTTPSMYILTQRGSLKRMSQDDIPVTSRAKRGLQVLRELKSKPHRVFK 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  F L          TS  +                              V 
Sbjct: 747 AGPVFTDQGDFDLF---------TSQEE------------------------------VA 767

Query: 849 DNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + DQI+ ++   G +  V V ++ ++ R + G  +     D+ V S  RI+
Sbjct: 768 EQDQILQITSTTGQVTEVDVTQLSLSERTSNGSFVNDQISDQEVYS-ARIK 817


>gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
 gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143]
          Length = 826

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/885 (32%), Positives = 457/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQTAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D + +  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKANDALQAAFICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V E+GF                             IG L +   V
Sbjct: 747 LAGA-----------VVEQGF-----------------------------IGDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +NDQI+LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 142/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E    ++              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V+T      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQTAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   ++ + + 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKANDALQAA 697


>gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
 gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus
           casseliflavus ATCC 12755]
          Length = 820

 Score =  636 bits (1640), Expect = e-180,   Method: Composition-based stats.
 Identities = 288/889 (32%), Positives = 467/889 (52%), Gaps = 95/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHRSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG V +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQH--------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 413 -----------------GFTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+  S LL +IK+EL  +K +  TPR T I   + +++ E    + +E++VVTV+  GYV
Sbjct: 456 LNEESELLKVIKKELREIKKKYSTPRLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPE-----EIGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +     + +  I+     +        V  +K+G +++ ++++F   
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEM--IIGVFAYKEIDPLKNFVLISKNGMIKQTRMTEFEPW 628

Query: 669 N---RSGKIAMKLDSR-DEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V     T+E D+ L + L   +R+ ++ +    G  + 
Sbjct: 629 RTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEV-PVVGPKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D +I+  +V                                         
Sbjct: 688 GVKAMNLKADDYLINGLLVYSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ ++++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVLITQRGAAKRMLAQEITQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +    +N Q+++ + KG    V  N+I I  R + G  I       ++
Sbjct: 756 YMGN-GENQQLLVTNQKGQAFEVITNQIPINDRTSNGSFIMDEKTGGQI 803



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 77/253 (30%), Gaps = 65/253 (25%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  T+ G V+R+ L  +          + +   D +L        + +LL T  G  + 
Sbjct: 506 VVTVTRDGYVKRSSLRSYGASKPEE---IGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P+  +               L   D                                  
Sbjct: 563 RPVHELP-------------DLKWKD---------------------------------L 576

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                 ++   +  E  I     +E+   + F+L +S+ G  K+T   +F          
Sbjct: 577 GEHISQTVMTLAQDEMIIGVFAYKEIDPLKNFVL-ISKNGMIKQTRMTEFEP-------W 628

Query: 828 RATDVSK------INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKG 879
           R             +E   LV VF  +  ++  + LVS     +R  +NE+ +      G
Sbjct: 629 RTYKTRPMTIMKLKDESDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEVPVVGPKAAG 688

Query: 880 VVIFSTAKDERVV 892
           V   +   D+ ++
Sbjct: 689 VKAMNLKADDYLI 701


>gi|324991105|gb|EGC23039.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK353]
          Length = 816

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 451/887 (50%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A++++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANSELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRISELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFV 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E                                           
Sbjct: 747 AGPVFGEAVDFDLFTTE----------------------------------------AEA 766

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 767 SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 76/558 (13%), Positives = 166/558 (29%), Gaps = 37/558 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I     +   
Sbjct: 295 GLRIAIELKKDANSELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIILARSRFDKAKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           +++ +     +              V  T+ G ++R   
Sbjct: 464 KRELRDVKKKFGNP------RISELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          M     D ++ V        +L+ T LG  +  P+  +     +   
Sbjct: 518 RSFSASTLEE---MGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIG 574

Query: 723 GV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               + I +    ++VI   ++   +         +  +    R          S     
Sbjct: 575 EHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKF 634

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +   N  +       +K   ++ V++ G+  R +  +  +      G++A ++ K     
Sbjct: 635 AKLKNEDDRVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLKK----D 690

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
            ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V V    
Sbjct: 691 DVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKAKPHRVFVAGPV 750

Query: 899 ESEIVD------EAESTE 910
             E VD      EAE++E
Sbjct: 751 FGEAVDFDLFTTEAEASE 768


>gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB
           8052]
 gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB
           8052]
          Length = 970

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 305/938 (32%), Positives = 463/938 (49%), Gaps = 99/938 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  + + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ 
Sbjct: 10  PKDNNIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDRP 69

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++Y+++  +AQD+S R  LIEG GN+GS+DGD  AA RY
Sbjct: 70  YYKSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGSIDGDGAAAMRY 129

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L D+ KDTV+  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNI
Sbjct: 130 TEARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNI 189

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV +G +A IDN +I    LM+ I+GPD PTG +++G   I +AY TG G +  
Sbjct: 190 PPHNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILIGEKSILSAYETGEGKVAY 249

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IEK    R  I++TE PY+ NK+ +L+ I+E+  +KR       I D+RDESDR 
Sbjct: 250 RAKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALESITDIRDESDRS 309

Query: 307 GYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIELK+      AD +L  L++ T LQ   S NMVAL   KPE  +L  I++ +V 
Sbjct: 310 GIRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVALANGKPETMSLKAIIRYYVE 369

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E++ RRT+  L+ A+ R H++ G   A++ LDEV+  IR S + + A   L+ +   
Sbjct: 370 HQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSKKDASENLISK--- 426

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     SE Q +AILEL L RLTGL  +    E   L   
Sbjct: 427 -----------------------FGFSEAQAQAILELMLYRLTGLEIEIFEKEYAQLEKL 463

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVT 541
           IK+   ILSS   LL ++K EL  + D+    RRT I+       ++ E+ I+ E+++VT
Sbjct: 464 IKKLEKILSSEKELLKVVKSELKEISDKYGNDRRTEIIHDDNESKIDVEELIIVEEVMVT 523

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+VKR+PL  Y    R       +  R+ D +  L   +T  ++L F+  GF+Y+ 
Sbjct: 524 ISKDGFVKRIPLKNY---TRSSSNPEDIEYREGDSLKYLINSNTKDTLLVFTDKGFMYQT 580

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +P    + +G  L  I+     +    I     D  + +  +  F TKHG ++ + 
Sbjct: 581 KGINIPEMRWKEKGDRLDEIIKSLNLDNEKIIAAISIDNFNPSKAF-RFITKHGGIKLSS 639

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETC---TQENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F         A+KL   DE++ V       +E  + + +KLG      I  +     
Sbjct: 640 LDKFQTAYGK-LQALKLRDGDELIDVSMRELEEEEKFLKVKSKLGLEFTLEIKNLEE-TA 697

Query: 719 RNSVGVRGISLAKGDQV-------------ISMAIVLHADADYDERICYM---------- 755
           RN +  +  + ++ D++             +S+ +       + ERI             
Sbjct: 698 RNILPTQLFNFSEEDEISQVEDTNEIEYFELSVGVTDKNKFKFYERIKEDSLKVKTNSLK 757

Query: 756 ------------KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                       K      R +      + +          I      +   ++  + T 
Sbjct: 758 ELLIFSNRGYVYKIPVFLMRNVLNKEINVEAFIGKMEKGEKIISLISIDSYDEDLGVYTF 817

Query: 804 SEKGFGKRTSSYDFR----ISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIIL 855
           ++KG  K+T   +F                      +    +V+   V  N      +I+
Sbjct: 818 TKKGMVKKTLLKEFEGDFLKQ-------ACYKFKFED--DEVVS---VEMNQIKIGHLIM 865

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           ++ KG  IR PV  + I  +   GV   S   +++V+ 
Sbjct: 866 ITKKGMAIRFPVENVNIMGKIASGVTGISLRDEDQVIF 903



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 16/225 (7%)

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              ++   +L FS+ G+VYK  V+ +         K +     + + E+   I+     +
Sbjct: 751 VKTNSLKELLIFSNRGYVYKIPVFLM----RNVLNKEINVEAFIGKMEKGEKIISLISID 806

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLT 699
           S   +L V   TK G V++  L +F                DE++SVE    +   +++ 
Sbjct: 807 SYDEDLGVYTFTKKGMVKKTLLKEFEGDFLKQACYKFKFEDDEVVSVEMNQIKIGHLIMI 866

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           TK G  +RFP+  + +  G+ + GV GISL   DQVI                 Y K   
Sbjct: 867 TKKGMAIRFPVENVNIM-GKIASGVTGISLRDEDQVI----------FGKYHSNYKKSDD 915

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               L S DT+     K       +IS+ + Q    +   I+ VS
Sbjct: 916 NTVMLSSDDTKITLVSKGKERSVMDISDIKLQNRAGRGTSIMMVS 960


>gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555]
 gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016]
 gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555]
 gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 953

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 283/935 (30%), Positives = 457/935 (48%), Gaps = 83/935 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++    ++     I  + I + M ++Y+ YA+ V   RA+PD+RDGLKPVHRRI++G 
Sbjct: 1   MAKNTSIPED---NNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGA 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +     + Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ ++ +I+G GN+GS 
Sbjct: 58  YMLKAFPERPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ KD V+   NY GS +EP VL ARYPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV++   A ID  DI  + LME I+GPD PTG +I+GR  +  A
Sbjct: 178 GIAVGLATNIPPHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGGIIIGRQSLICA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDI 296
           Y TG G   +R  + IEK    R  IV+TE PY+ +KA +L+ I+E+  +KR       I
Sbjct: 238 YTTGEGKATLRAKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPI 297

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE K+      A  +L  L + T LQ     NMVAL   KP    
Sbjct: 298 SDIRDESDRNGIRAVIEFKKSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALADGKPVTLG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK ++ ++++++ RRT+  L  A+ R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKDILKHYIKYQKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              LM++                             +  Q+ AILEL L RLTGL     
Sbjct: 418 ASNLMEK--------------------------FEFTREQSEAILELMLYRLTGLEIVSF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDED 531
             E   L   IK+   IL S   +L +IK+EL  + ++    R+T     E    ++ ++
Sbjct: 452 EKEHRELLKIIKKLTKILDSEKEILKVIKKELAEIAEKYGEERKTVIIEEEEEAKIDVKE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +V ED+V+T+S   ++KR+ L  Y    R  +    +  R+ DF   +   ST  +++F
Sbjct: 512 ILVDEDIVITISKEAFIKRISLKSY---NRSSREVKDIEYREGDFNKYVINSSTKDTIMF 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +YK K   +P    + +G+ L NI+          I+     +   +    +F 
Sbjct: 569 FTDKGNMYKIKGMDIPEFKWREKGEKLENIIK-GIDLSEENIVAVYSIDDFSSPQDFIFF 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRF 708
           T    ++R + + F+    +  +A++L   +E++ V+   +      I + TK+G     
Sbjct: 628 TNMAGIKRTETNAFVT-KYTKLMALRLKKEEELIDVKLVNRNESLNFIKVETKIGLKFTV 686

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA----------------------------- 739
            +  +     RN +     SL KGD+++ M                              
Sbjct: 687 KVPEL-ALEDRNIIANELCSLVKGDKIVKMDLSEESGYETFYININKSGIIKISNSGRTF 745

Query: 740 --IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             +  ++ ++        +  S    +         +++    +      +         
Sbjct: 746 KNVFTNSSSNILVFTVCGRVFSMPSFMFEQIESSGINIRELMGISAQDILKMISIENFDY 805

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            +I   ++ G  KRT   +F+  N    G         N    LV V    + ++I+L++
Sbjct: 806 GYIYFFTKYGMIKRTELNEFKDIN----GWNTAH-KFKNNEDFLVNVEYGKEKNEILLIT 860

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +KG  I+   + I    ++  GV   +   ++ V+
Sbjct: 861 EKGMAIKFQGDSINSMGKSASGVTAINLKGEDSVI 895



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/488 (12%), Positives = 152/488 (31%), Gaps = 72/488 (14%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR----RE 416
           F+         R+   +     R        +  ++  + +       N    +     E
Sbjct: 527 FIKRISLKSYNRSSREVKDIEYREGDFNKY-VINSSTKDTIMFFTDKGNMYKIKGMDIPE 585

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
              R         +  +       +        S  Q   I    +A +     +    +
Sbjct: 586 FKWREKGEKLENIIKGIDLSEENIVAVYSIDDFSSPQ-DFIFFTNMAGIKRTETNAFVTK 644

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
              L     +  + L     +        + V+ ++           + ++  ED  +  
Sbjct: 645 YTKLMALRLKKEEELIDVKLVNRNESLNFIKVETKIGLK----FTVKVPELALEDRNIIA 700

Query: 537 DMVVTVSHLGYVKRVPLSV---YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           + + ++     + ++ LS    Y            + + +          ++ +++L F+
Sbjct: 701 NELCSLVKGDKIVKMDLSEESGYETFYININKSGIIKISNSGRTFKNVFTNSSSNILVFT 760

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G V+    +              I  L     + I  ++         +  Y+ F TK
Sbjct: 761 VCGRVFSMPSFMFEQIESSGIN---IRELMGISAQDILKMISIENF----DYGYIYFFTK 813

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +G ++R +L++F  IN         ++ D +++VE   ++N+ILL T+ G  ++F   +I
Sbjct: 814 YGMIKRTELNEFKDINGWNTAHKFKNNEDFLVNVEYGKEKNEILLITEKGMAIKFQGDSI 873

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               G+++ GV  I+L   D VI                                     
Sbjct: 874 NSM-GKSASGVTAINLKGEDSVI----------------------------------YSM 898

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
            ++  ++ + N++  +  + ++K + I+                 + NR G+G     V 
Sbjct: 899 VMEEKANCKLNLTSVKGNKKQIKSKNII-----------------LQNRGGRGSNVMLVI 941

Query: 834 KINEIGAL 841
             + I  +
Sbjct: 942 MEDRIAEV 949


>gi|119717173|ref|YP_924138.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
 gi|119537834|gb|ABL82451.1| DNA topoisomerase IV subunit A [Nocardioides sp. JS614]
          Length = 826

 Score =  636 bits (1639), Expect = e-180,   Method: Composition-based stats.
 Identities = 268/850 (31%), Positives = 405/850 (47%), Gaps = 88/850 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +      ++ E+ I    I  EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M  
Sbjct: 5   KTTKDLPDDFEEHILDTDIKQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMND 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  ++ +VKCARI GEVMG+ HPHG++AIYDAL R+AQ W++RL +++G GNFGS  G
Sbjct: 65  MGLRPDRGHVKCARIVGEVMGRLHPHGDSAIYDALVRVAQPWAMRLPMVDGHGNFGSPGG 124

Query: 123 -DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DPPAA RYTE R+   A  +   + +DTVDF+PNYD    EP VL A  P+++VNG  G
Sbjct: 125 DDPPAAMRYTEARMAPPAVAMTASIDEDTVDFKPNYDSRELEPSVLPAAIPSLVVNGTTG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN   HNL EVV     +I +P   ++ LM  + GPD PTG  I+G  G+++AY
Sbjct: 185 IAVGMATNCAPHNLVEVVQALRHLITHPSATVEDLMRFVPGPDLPTGGKIVGLEGVRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG+  +R  + +E  +  R+ IVVTE+PY V    ++E+I  LV+ K++  I+D++D
Sbjct: 245 ETGRGTFRMRATARVESITNRRKGIVVTELPYGVGTEKVVERIKTLVQGKKLQGISDIKD 304

Query: 302 ESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIE+K G   + +L QLY++T ++  F +N VAL   +P   +L  +L+ 
Sbjct: 305 LTDRENGLRLVIEVKNGFVPEALLEQLYKHTPMEDTFGINAVALVDGQPRTLSLKELLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R +VV RR+ +   KA DR H++ GL IA+ ++DEV+++IR S N   A+  L+  
Sbjct: 365 FLDHRFDVVRRRSVFRRGKAADRLHLVEGLLIAILDIDEVIQLIRSSDNAAAAKERLIS- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSEVQ   IL++ L RLT   R ++  E + L
Sbjct: 424 -------------------------VFDLSEVQADYILDMPLRRLTKFSRIELEKEQDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV----RE 536
              I+E   I++       ++  EL  +      PRRT ++E          +      +
Sbjct: 459 RRTIEELDAIINDDKLRWKVVSDELGEIAKTYGNPRRTVLLESAGTAVTAAAVPLEVADD 518

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R   +  +  R GG+    VV+            +    V   +S G
Sbjct: 519 PCYVYLSSTGLLARTANAD-QPGRGGGRASHDVVV-------SAVPATARGEVGGLTSAG 570

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + K  V  LP     A    L   L +                  + +   +   T+ G
Sbjct: 571 RLVKIGVLELPQLPDTANDPHLAGGLPVSEILALDPGERLLALCTLTTDGPGLALGTRLG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R       +        ++L   DE++ +VE  T    +   T   Q + F   A+R
Sbjct: 631 TVKRVNPEVLGK---DDWEVIRLADGDEVVGAVELRTGHETLCFITTDAQLLHFGAEAVR 687

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  G+ GI +  G++V     +     +    +      +A              
Sbjct: 688 P-QGRSGGGIAGIRVTTGERVAWFGAIDPDTPEGSVVVTASGSATALPG----------- 735

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                        +E G  K T   ++    R+  G+R     K
Sbjct: 736 -----------------------------TEPGAVKATPFSEYPAKGRATGGVRCHRFLK 766

Query: 835 INEIGALVAV 844
                ALV  
Sbjct: 767 GE--DALVFA 774



 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 837 EIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +   +V    +    + +  ++    L+      +R   R+  G+        ERV    
Sbjct: 652 DGDEVVGAVELRTGHETLCFITTDAQLLHFGAEAVRPQGRSGGGIAGIRVTTGERVAWFG 711

Query: 896 RIRESEIV 903
            I      
Sbjct: 712 AIDPDTPE 719


>gi|327460305|gb|EGF06642.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK1057]
          Length = 816

 Score =  635 bits (1638), Expect = e-180,   Method: Composition-based stats.
 Identities = 282/887 (31%), Positives = 450/887 (50%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTREEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L T+ G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDRVIALAPIKLDDVMLVTRNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFV 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E                                           
Sbjct: 747 AGPVFGEAVDFDLFTTE----------------------------------------AEA 766

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 767 SEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813



 Score = 96.0 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/558 (13%), Positives = 165/558 (29%), Gaps = 37/558 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I     +   
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIILARSRFDKAKAEKRLHIVEGLIRVLSILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +     +              V  T+ G ++R   
Sbjct: 464 KRELRDVKKKFGNP------RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          M     D ++ V        +L+ T LG  +  P+  +     +   
Sbjct: 518 RSFSASTLEE---MGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIG 574

Query: 723 GV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               + I +    ++VI   ++   +         +  +    R          S     
Sbjct: 575 EHLSQTISNFDTREEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKF 634

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +   N  +       +K   ++ V+  G+  R +  +  +      G++A ++ K     
Sbjct: 635 AKLKNEDDRVIALAPIKLDDVMLVTRNGYALRFNIEEVPVIGAKAAGVKAINLKK----D 690

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
            ++A   + + D + L++ +G+L R+ V +I + SRA +G+ +          V V    
Sbjct: 691 DVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFVAGPV 750

Query: 899 ESEIVD------EAESTE 910
             E VD      EAE++E
Sbjct: 751 FGEAVDFDLFTTEAEASE 768


>gi|171779307|ref|ZP_02920271.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281924|gb|EDT47355.1| hypothetical protein STRINF_01148 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 819

 Score =  635 bits (1638), Expect = e-179,   Method: Composition-based stats.
 Identities = 272/770 (35%), Positives = 412/770 (53%), Gaps = 40/770 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLRDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    ILN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR T +      ++++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANPRLTELQAEAQTIEIDVASLIVEEDTYVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          +  RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSYNAS-----TVEEIGKRDDDELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         ++   +       ATK+G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFATDEYVLYAEIVDE---FGPQTYFAATKYGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              A+   KL   D+I+        +D+++ T  G  + F I  +    G  + GV+ I+
Sbjct: 628 KSKAVKYAKLKKDDDIVVTIAPIALDDVMVITHNGYALHFNIDEV-PVVGAKAAGVKSIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           L   D V+S  I          +   +K M+ +    +        +  +
Sbjct: 687 LKDDDFVVSAFIANTESFFILTQRGSLKRMATELIPAASRANRGLQVLRE 736



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/470 (11%), Positives = 129/470 (27%), Gaps = 30/470 (6%)

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNEL 477
             +   ++  I+L  D+      +  +  +++Q      ++ +       +G   +    
Sbjct: 290 ESDRDGLRIAIELKKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSY 349

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            +   +I               +   E L     +       I          D      
Sbjct: 350 IAHRKDIIVARSKFDKEKAEKRLHIVEGLIRVVSILDE---VIALIRASENKADAKENLK 406

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +    S       V L +YR                 + +T L                 
Sbjct: 407 VSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITML--------KAIIGDERT 458

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +           L + +     +              V  TK G +
Sbjct: 459 MYNVMKRELREVKKKFANP------RLTELQAEAQTIEIDVASLIVEEDTYVSVTKGGYI 512

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     +          +     DE++ V        +L+ T LG  +  P+  +    
Sbjct: 513 KRTSPRSYNASTVEE---IGKRDDDELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIR 569

Query: 718 GRNSVGV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            ++      + I + A  + V+   IV                +    R          S
Sbjct: 570 WKDIGEHLSQTITNFATDEYVLYAEIVDEFGPQTYFAATKYGQIKRFERKEFTPWRTYKS 629

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +      +       +    ++ ++  G+    +  +  +      G+++ ++  
Sbjct: 630 KAVKYAKLKKDDDIVVTIAPIALDDVMVITHNGYALHFNIDEVPVVGAKAAGVKSINLKD 689

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            +    +V+ F  N  +   +++ +G+L R+    I  ASRA +G+ +  
Sbjct: 690 DDF---VVSAFIAN-TESFFILTQRGSLKRMATELIPAASRANRGLQVLR 735



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 88/259 (33%), Gaps = 23/259 (8%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           T +  ++R        F     +   A       EI       +E+  +  TK G   R 
Sbjct: 458 TMYNVMKRELREVKKKFANPRLTELQAEA--QTIEIDVASLIVEEDTYVSVTKGGYIKR- 514

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             ++ R +   N+  V  I     D+++ ++                        L    
Sbjct: 515 --TSPRSY---NASTVEEIGKRDDDELVFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIR 569

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDF---RISNR 822
            ++I    + +       E       + E   Q     ++ G  KR    +F   R    
Sbjct: 570 WKDIGEHLSQTITNFATDEYVLYAEIVDEFGPQTYFAATKYGQIKRFERKEFTPWRTYK- 628

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             K ++   + K ++I  +V + P+  +D +++++  G  +   ++E+ +      GV  
Sbjct: 629 -SKAVKYAKLKKDDDI--VVTIAPIALDD-VMVITHNGYALHFNIDEVPVVGAKAAGVKS 684

Query: 883 FSTAKDERVVSVERIRESE 901
            +   D+ VVS   I  +E
Sbjct: 685 INLKDDDFVVS-AFIANTE 702


>gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
 gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01]
          Length = 800

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/888 (31%), Positives = 464/888 (52%), Gaps = 102/888 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TV F  NYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNP+I +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+VVTE+PY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 TEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVVV RTK+
Sbjct: 305 KEANSEAIKNYLFKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVVNRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVA---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   ++ Q  AI+ L+L RLT     +++NE   L   IKE   IL +  
Sbjct: 409 ----------TYGFTDAQAEAIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    T R + I      + ++ E  +  ED++++V+  GY+KR   
Sbjct: 459 ALLTVIKNELKDIRKRFKTERLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        S + ++  D +     V+T  ++L F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  ++++        I+    +++     + + AT++G ++++    F     +  
Sbjct: 574 LGQHVSQLVAIE---EDEYIINVYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKP 630

Query: 674 I-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + AMK+  +DEI+SV+  T++  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LVAMKVKPQDEIISVQRLTEDQIITVLTHKGMSLTYNTNEL-SDTGLRAAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V                                                   
Sbjct: 690 DFVVMTEVVE-------------------------------------------------- 699

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851
                Q I+  +++G  KR      +++ R+ +GI      K N    +VA   V +N  
Sbjct: 700 ---AGQTIIMATQRGAMKRIDFKVLQLAKRAQRGITLLKELKKNPH-RIVAGHVVTENQS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + ++ S+     G ++     +I  + + T G  I  T +   V+++ 
Sbjct: 756 EYMIYSESHVEEGLIV-----DIHKSEQYTNGSFIVDTTEFGEVINMT 798



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 17/244 (6%)

Query: 659 RNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    F     S   A +     D+ + V     E+ I+  T  G   R   ++ R F 
Sbjct: 469 KDIRKRFKTERLSSIEAEIAEIKIDKEVMVP---SEDVIMSVTAQGYIKR---TSTRSF- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITS 774
             N+ GV  I L +GD+++    V   D      ++       +         +  +  S
Sbjct: 522 --NASGVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVS 579

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                  +  I     ++   +E F +  +  G  K++ +  F+ + R  K + A  V  
Sbjct: 580 QLVAIEEDEYIINVYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTT-RYTKPLVAMKVKP 638

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                 +++V  + ++  I +++ KG  +    NE+        GV   +   ++ VV  
Sbjct: 639 ---QDEIISVQRLTEDQIITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLKVEDFVVMT 695

Query: 895 ERIR 898
           E + 
Sbjct: 696 EVVE 699


>gi|293376333|ref|ZP_06622570.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325843419|ref|ZP_08167977.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
 gi|292645022|gb|EFF63095.1| DNA topoisomerase IV, A subunit [Turicibacter sanguinis PC909]
 gi|325489341|gb|EGC91715.1| DNA topoisomerase IV, A subunit [Turicibacter sp. HGF1]
          Length = 801

 Score =  635 bits (1637), Expect = e-179,   Method: Composition-based stats.
 Identities = 285/856 (33%), Positives = 456/856 (53%), Gaps = 92/856 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + +  + + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  + K
Sbjct: 2   ENSTQRVQVMRLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYKDGNTFEK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G V+G YHPHG++++Y+A+ RM+QDW LR  L++  GN GS+DGDP AA R
Sbjct: 62  AFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKLREPLVQMHGNNGSIDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   +  LL D+ K+ VDF PN+D S  EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 122 YTEARLSAISGLLLKDIDKNLVDFIPNFDDSMTEPTVLPAFFPNLLVNGATGISAGYATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++D  +  +++    LD L+  I+GPDFPTGA+I G   IK AYATG+G I+
Sbjct: 182 IPPHNLAEIIDAVIHRMNHKQCQLDDLLTFIKGPDFPTGAIIQGIQEIKKAYATGKGRII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE   G R+QIVVTEIPY+VNKA +++KI +L  +K+I  I ++RDE+DR G R
Sbjct: 242 VRSKAEIETIRGGRDQIVVTEIPYEVNKANLVKKIDDLRIDKKIDGIMEVRDETDRNGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+   ++++LN L++ T LQ  +++NMVA++  +P    L+ ++ A++  ++EVV
Sbjct: 302 IVIELKKDVKSEMVLNYLFKNTDLQVSYNINMVAIHNKRPVLMGLMDLIDAYIQHQKEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R+ Y L +AR+R H++ GL   V+ LDEVV +IR S +   A++ LM           
Sbjct: 362 TNRSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLM----------- 410

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ L+L RLT      ++ E   L   I E  +
Sbjct: 411 ---------------VAFEFSERQAEAIVMLQLYRLTNTDVTALQQENEELSKTILELTE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           ILSS ++LL +I+ EL  V+ +  T RR++I      + +++ D I +ED++V V+  GY
Sbjct: 456 ILSSETKLLKVIQTELKQVRKDFKTERRSQIEEQIQEIKIDETDMITKEDVIVAVTKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR  +  Y A +          M+D D +     V T  ++L F++ G      V++LP
Sbjct: 516 VKRTSIRSYNATKSEMPV-----MKDGDELVSKLQVDTLQTLLMFTNRGSFIYLPVYKLP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ + N+++++  E++  +    + +   +   + F T +G +++ +L DF  
Sbjct: 571 EFKWKDIGQHVSNLVTIDSEEKVIAVFAISDFK---SEECLFFTTANGMIKKTRLGDFEV 627

Query: 668 INR-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                  +AM +   D ++SV      ND+++ TK G  ++F    I    G  ++GV+G
Sbjct: 628 SRYNRAMMAMAVKEDDVLISVVKAPSPNDVIMVTKQGYLLKFSDEEI-AITGLKAMGVKG 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I++ K DQ+I + +    D                                         
Sbjct: 687 IAIGKDDQLIKVVLANAND----------------------------------------- 705

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L ++++G  K+    D  +S+R+ KG       K N     V    
Sbjct: 706 ------------ELLLLTQRGNIKKLKVKDIALSSRNKKGSLGIKAIKSNPH-YFVDCIK 752

Query: 847 VNDNDQIILVSDKGTL 862
           V  N ++ + ++   +
Sbjct: 753 VESNQEVYIKTETTQV 768



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/457 (13%), Positives = 161/457 (35%), Gaps = 25/457 (5%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           I+L  D    +  +     +++Q    + +            + + +++     KE +  
Sbjct: 304 IELKKDVKSEMVLNYLFKNTDLQVSYNINMVAIHNKRPVLMGLMDLIDAYIQHQKEVVTN 363

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
            S+        +Q ++    ++ +     +       +  D      +    S       
Sbjct: 364 RSNYDLKRARERQHIVEGLIKMVSVLDEVVHMIRQSKDKSDAKKNLMVAFEFSERQAEAI 423

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V L +YR                   + +L  + +  + L       V + ++ ++    
Sbjct: 424 VMLQLYRLTNTDVTALQQENEELSKTILELTEILSSETKLL-----KVIQTELKQVRKDF 478

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
              R   +   +           +   E +       +V  TK G V+R  +  +    +
Sbjct: 479 KTERRSQIEEQIQ---------EIKIDETDMITKEDVIVAVTKDGYVKRTSIRSY-NATK 528

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-SVGVR-GIS 728
           S    MK    DE++S         +L+ T  G  +  P+  +  F  ++    V   ++
Sbjct: 529 SEMPVMK--DGDELVSKLQVDTLQTLLMFTNRGSFIYLPVYKLPEFKWKDIGQHVSNLVT 586

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +   ++VI++  +   D   +E + +       ++   GD E     +   ++     + 
Sbjct: 587 IDSEEKVIAVFAIS--DFKSEECLFFTTANGMIKKTRLGDFEVSRYNRAMMAMAVKEDDV 644

Query: 789 RCQELKLKEQ-FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +K      ++ V+++G+  + S  +  I+     G++   +    +   L+ V   
Sbjct: 645 LISVVKAPSPNDVIMVTKQGYLLKFSDEEIAITGLKAMGVKGIAIG---KDDQLIKVVLA 701

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           N ND+++L++ +G + ++ V +I ++SR  KG +   
Sbjct: 702 NANDELLLLTQRGNIKKLKVKDIALSSRNKKGSLGIK 738



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/288 (19%), Positives = 107/288 (37%), Gaps = 21/288 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +  L     E   TI+   E  SS   L  V  T+   VR++  ++           +K+
Sbjct: 436 VTALQQENEELSKTILELTEILSSETKLLKVIQTELKQVRKDFKTERRSQIEEQIQEIKI 495

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS-VGVRGISLAKGDQVIS 737
           D  D        T+E+ I+  TK G   R   ++IR +    S + V    +  GD+++S
Sbjct: 496 DETD------MITKEDVIVAVTKDGYVKR---TSIRSYNATKSEMPV----MKDGDELVS 542

Query: 738 ---MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              +  +       +        +         D  +  S       E  +         
Sbjct: 543 KLQVDTLQTLLMFTNRGSFIYLPVYKLPEFKWKDIGQHVSNLVTIDSEEKVIAVFAISDF 602

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E+ +   +  G  K+T   DF + +R  + + A  V + +    L++V      + +I
Sbjct: 603 KSEECLFFTTANGMIKKTRLGDFEV-SRYNRAMMAMAVKEDDV---LISVVKAPSPNDVI 658

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +V+ +G L++    EI I      GV   +  KD++++ V     ++ 
Sbjct: 659 MVTKQGYLLKFSDEEIAITGLKAMGVKGIAIGKDDQLIKVVLANANDE 706


>gi|14531024|gb|AAK63177.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 286/885 (32%), Positives = 453/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A   G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAESVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +       T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----AIDEIGKRDDDRLIFGQSAKTIQHLLMFTSLGNVIYPPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D      ++             +    + +R+   +    +  K    V   +  
Sbjct: 687 NLKEDD------VLQSGFICNTSSFYLLTQRGSLKRVSVEEIPATSRAKRGLQVLRELKN 740

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +           VSE+GF                              G L +   V
Sbjct: 741 KPHRVFLAG-----AVSEQGFV-----------------------------GDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYENRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 137/534 (25%), Gaps = 78/534 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++  ++      +L+ T LG  +                
Sbjct: 518 RSFAASAIDE---IGKRDDDRLIFGQSAKTIQHLLMFTSLGNVI---------------- 558

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                                          Y               E ++    +    
Sbjct: 559 -------------------------------YPPIHELADIRWKDIGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
 gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334]
          Length = 821

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 285/893 (31%), Positives = 455/893 (50%), Gaps = 83/893 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKEANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++    A  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDAYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQAAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTITNFETNEEILYVEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 631

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL +  G  +RF I  +    G  + GV+ +
Sbjct: 632 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISLNGYALRFNIEEV-PVVGAKAAGVKAM 689

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D + S  I   +      +   +K +S      +   +    +  +   + +   
Sbjct: 690 NLKEDDTLQSAFICNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVF 749

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +   V
Sbjct: 750 LAGA-----------VAEQGFV-----------------------------GDLFS-TEV 768

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V     I +
Sbjct: 769 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEVFDAYIIVK 821


>gi|322388037|ref|ZP_08061643.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
 gi|321141058|gb|EFX36557.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus infantis
           ATCC 700779]
          Length = 825

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/884 (32%), Positives = 454/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLTAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +     +++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELRDVKRQFATPRLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +  V T   +L F++LG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEIGKRDDDRLLFIQSVKTTQHLLIFTTLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEVLYVEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D+LL +K G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDSDQIVAVAPIKLDDVLLISKNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++ +  I   +      +   +K +S +    +   +    +  +   + +    
Sbjct: 688 LKADDELQAAFICNTSSFYLLTQRGSLKRVSTEEIPATSRAKRGLQVLRELKSKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         VSE+GF                             IG L +   V 
Sbjct: 748 AGA-----------VSEQGF-----------------------------IGDLFS-TEVE 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           D +Q +++ S+ GT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 DGEQTLVIQSNNGTIYEAILQDLNLSERTSNGSFISDTISDEEV 810



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 143/534 (26%), Gaps = 76/534 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------TAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     Q           L+  E    ++              V  TK G ++R   
Sbjct: 464 KKELRDVKRQFATP------RLSSLEDTAEVIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D +L +++      +L+ T LG  +  P+  +         
Sbjct: 518 RSFSASTLEE---IGKRDDDRLLFIQSVKTTQHLLIFTTLGNVIYRPVHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             +      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EEVLYVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYR-SKSVKYAKL--KDDSDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 645 IVAVAPIKLDD-VLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLKADDELQAA 697


>gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
 gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC
           35037]
          Length = 826

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/885 (31%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVVD--QFDDATTYFVATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKATGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D + +  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKADDALQAAFICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +   V
Sbjct: 747 LAGA-----------VAEQGF-----------------------------FGDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 141/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQAA 697


>gi|255326306|ref|ZP_05367392.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
 gi|255296760|gb|EET76091.1| DNA gyrase subunit A [Rothia mucilaginosa ATCC 25296]
          Length = 841

 Score =  634 bits (1636), Expect = e-179,   Method: Composition-based stats.
 Identities = 270/837 (32%), Positives = 407/837 (48%), Gaps = 102/837 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM+ S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ ++LRL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +P+  L  +M+ I GPD PTG  I+G  GI++AY TGRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGIRDAYETGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             IE+ S  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VI
Sbjct: 257 VSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLTDRTNGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G + + +L  LY++T L+  F +N VAL   +P+   L+ +++ ++  R  VV RR
Sbjct: 317 EIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLDLMRVYIDHRLNVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K  DR H++ GL +A+ ++DEV++IIR S     AR +L               
Sbjct: 377 TEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL--------------- 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q   ILELRL +LT   R ++  E  +L  EI E   IL 
Sbjct: 422 -----------KVVFDLTDTQANHILELRLRQLTKYSRLELEAERETLQQEIAELQRILG 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC----------------IVRE 536
           S + L  ++ +EL  V +   T RRT++          +                 I  +
Sbjct: 471 SDAALRELVSEELAEVAERYGTDRRTQLKTKDEMQVAIEAVTAQSKTKKSLGLALEIADD 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P    R                 D  T +   +    +   +S G
Sbjct: 531 PCWVLLSASGMMGRTPGKPIREA-----LVDPGKRFKHDVFTSIVPTTARGEIGAVTSAG 585

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            + +  V  + +        ++ + +   +  ++              N  +  AT  G 
Sbjct: 586 RMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPL--NTVLALATAGGV 643

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI-LLTTKLGQCVRFPISAIRV 715
           ++R      +         MKL   DEI++   C  ++ +    T+  + + F  + +R 
Sbjct: 644 IKRLNPDYPLNQTEWD--IMKLKDGDEIVAAAPCPTDDAVLTFVTRDAKLLTFDAAKVRP 701

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR   G+ GI LA GD++I++ +    DA     +   K   A               
Sbjct: 702 -QGRTGGGIAGIKLADGDRLIALGVTAPGDAAEVVTVTNGKDGLAS-------------- 746

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                             K T+  ++    R+  G+RA   
Sbjct: 747 ---------------------------------AKVTALSEYPQKGRATGGVRAHRF 770



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 88/271 (32%), Gaps = 34/271 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R       +         K    D   S+   T   +I   T  G
Sbjct: 529 DDPCWVLLSASGMMGRTPGKPIREALVDPGKRFK---HDVFTSIVPTTARGEIGAVTSAG 585

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  I V          +  V+    + LAKG++++++  +    A         
Sbjct: 586 RMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVLALATAGGVIK 645

Query: 756 K-HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           + +          D  ++       +     +++       ++  +LT           +
Sbjct: 646 RLNPDYPLNQTEWDIMKLKDGDEIVAAAPCPTDDAVLTFVTRDAKLLTF---------DA 696

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND--QIILVSDK------GTLIRVP 866
              R   R+G GI    ++  +    L+A+      D  +++ V++         +    
Sbjct: 697 AKVRPQGRTGGGIAGIKLADGDR---LIALGVTAPGDAAEVVTVTNGKDGLASAKV--TA 751

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++E     RAT GV        E  +++  +
Sbjct: 752 LSEYPQKGRATGGVRAHRFLTGESQLALAWV 782



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +G T  + S    + +      E+   L      +   +  G  KR +  D+ ++    
Sbjct: 600 ENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVLALATAGGVIKRLNP-DYPLNQ--- 655

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 D+ K+ +   +VA  P   +D ++  V+    L+     ++R   R   G+   
Sbjct: 656 ---TEWDIMKLKDGDEIVAAAPCPTDDAVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGI 712

Query: 884 STAKDERVVSVERIRESEIVD 904
             A  +R++++      +  +
Sbjct: 713 KLADGDRLIALGVTAPGDAAE 733


>gi|313619190|gb|EFR90963.1| DNA topoisomerase IV, A subunit [Listeria innocua FSL S4-378]
          Length = 762

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/848 (32%), Positives = 451/848 (53%), Gaps = 92/848 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPFSTTEDIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++E   L  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKELAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELVAVLKSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F++ G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELPD 571

Query: 609 GSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  + ++   L+ GE I +++              +F TK+G  +++ ++++  
Sbjct: 572 IRWKNLGDHVSHLASDLSAGEEIRSVIAIDSFT---EQKRFLFVTKNGMTKQSAITNYKP 628

Query: 668 INRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              S   +A+KL   DE+L+V       DI L T+ G  +R+PI+ I     R + GV+ 
Sbjct: 629 QRYSKSMMAIKLKE-DELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPESGARTA-GVKA 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L +GD VI   ++   D                                         
Sbjct: 687 INLKQGDVVIGGVVLTPND----------------------------------------- 705

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + IL  +++G  K+  + +F   +R+ +G+      K N     + +  
Sbjct: 706 ----------NKHILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGLKL 754

Query: 847 VNDNDQII 854
            +  D + 
Sbjct: 755 ADSKDHLF 762



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 57/270 (21%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    +    N   +V  TK G V+R     +   N +    + +   D  + ++     
Sbjct: 493 IKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAE---LAMKEADHAIFIQKMNSL 549

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERI 752
           + +LL T  G  +  P+  +             I     GD V                 
Sbjct: 550 DSLLLFTNKGNFIYRPVHELPD-----------IRWKNLGDHV----------------- 581

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                               + L +D S    I      +   +++  L V++ G  K++
Sbjct: 582 --------------------SHLASDLSAGEEIRSVIAIDSFTEQKRFLFVTKNGMTKQS 621

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  +++   R  K + A  + +      L+ V+ ++  + I L +  G  +R P+ EI  
Sbjct: 622 AITNYKPQ-RYSKSMMAIKLKE----DELLNVYLIDGTEDIFLATRNGYGLRYPIAEIPE 676

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +   T GV   +  + + V+    +  ++ 
Sbjct: 677 SGARTAGVKAINLKQGDVVIGGVVLTPNDN 706



 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +  L     +  T+ + +   E    +   + L   E  I++V+++G+ KRTS   +  S
Sbjct: 468 KSELADIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS 527

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           N +     A       E    + +  +N  D ++L ++KG  I  PV+E+ 
Sbjct: 528 NGAEL---AMK-----EADHAIFIQKMNSLDSLLLFTNKGNFIYRPVHELP 570


>gi|256825410|ref|YP_003149370.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
 gi|256688803|gb|ACV06605.1| DNA topoisomerase IV subunit A [Kytococcus sedentarius DSM 20547]
          Length = 823

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/853 (33%), Positives = 422/853 (49%), Gaps = 89/853 (10%)

Query: 1   MTEHI--ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M ++   + +  +    +  + + +EM +++L YA +VI  RA+PD RDGLKPV RRILF
Sbjct: 1   MPKNSKDLQTPTQVADTVIDIDVEEEMSSAFLEYAYSVIYSRALPDARDGLKPVQRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM ++G+  ++ YVK +R+ GEVMGKYHPHG+ AIYDAL R+AQ +S+R+ L++G GNFG
Sbjct: 61  GMDELGLRPDRGYVKSSRVVGEVMGKYHPHGDTAIYDALVRLAQPFSMRVPLVDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+D D PAA RYTE R+  AA  +   L +DTVD  PNYD    +P VL A YPN+LVNG
Sbjct: 121 SLD-DGPAASRYTEARMAPAALLMTQTLDEDTVDMVPNYDDQLLQPEVLPAAYPNLLVNG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNI  HN+GEV+     ++DNP   ++ LM  + GPD P G  I+G  GI+
Sbjct: 180 ASGIAVGMATNIAPHNMGEVIAAARHLLDNPGATVEDLMRFVPGPDLPGGGRIVGLDGIR 239

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRGS   R    IE  +  R+ IVVTE+PY V    ++ K+   V+ K++  IAD
Sbjct: 240 DAYRTGRGSFRTRATVRIENVTPRRKGIVVTELPYLVGPEKVIAKLKTQVQAKKLQGIAD 299

Query: 299 LRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++D +D  +G ++VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +
Sbjct: 300 VKDLTDRHKGLQLVIEVKNGFNPEAVLAQLYKQTPMEESFGINNVALVDGQPRTLGLREL 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  +V FR EVV RRT++ L K ++R H++ GL +A+ ++DEV+++IR S +   AR  L
Sbjct: 360 LAVYVDFRCEVVRRRTEFRLRKRQERLHLVEGLLLAILDIDEVIQLIRSSDDTAEARTRL 419

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           MQ                             LSE+Q   ILEL+L RLT   R ++  E 
Sbjct: 420 MQ--------------------------VFDLSELQANYILELQLRRLTKFSRIELETER 453

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---- 533
           + L   I+E   IL+  + L  ++  EL +V  E  TPRRT ++E               
Sbjct: 454 DDLLRAIEELQAILADEALLRRVVSDELAAVAKEHATPRRTVLLESEAAAAMTPAAPLEV 513

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQ--RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             + + V +S  G V RVP          R     +G    D D +  +   +   +V  
Sbjct: 514 ADDPVTVVLSATGLVARVPRGEDTPSVLSRDDVRAAGAGRVDHDALASVVASTARGTVGL 573

Query: 592 FSSLGFVYKEKVWRLP-----IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            +S G + +  V  LP          A G  L     L  GER   ++       + ++ 
Sbjct: 574 VTSTGRLVRLSVVDLPALPGSDALGMAGGAPLAAFTELAGGERPLALVRVEG---AEDSP 630

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQC 705
            +  AT  G V+R +        +     + L   DE++ +VE  T E D++  T     
Sbjct: 631 GLALATAGGVVKRVRPDYP--GGKDSFEVITLADGDELVGAVELATGEEDLVFVTDAAAL 688

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + +  S +R   GR+  GV GI + +G +V+  A V  A  D           +      
Sbjct: 689 LTYSASLVRP-QGRSGSGVAGIKVPEGQRVLGFAAVPAASEDAMVVTVAGSSGALPG--- 744

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                                 ++ G  K T    +    R+  
Sbjct: 745 --------------------------------------TDAGTVKVTPLSAYPAKGRATA 766

Query: 826 GIRATDVSKINEI 838
           G+R   + K  + 
Sbjct: 767 GVRCHRLLKGEDG 779



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 96/266 (36%), Gaps = 23/266 (8%)

Query: 644 NNLYVVFATKHGNVRRNKL--SDFIQINRSGKIAMKLD--SRDEILSVETCTQENDILLT 699
           ++   V  +  G V R          ++R    A        D + SV   T    + L 
Sbjct: 515 DDPVTVVLSATGLVARVPRGEDTPSVLSRDDVRAAGAGRVDHDALASVVASTARGTVGLV 574

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRG-------ISLAKGDQVISMAIVLHADADYDERI 752
           T  G+ VR  +  +    G +++G+ G         LA G++ +++  V  A+      +
Sbjct: 575 TSTGRLVRLSVVDLPALPGSDALGMAGGAPLAAFTELAGGERPLALVRVEGAEDSPGLAL 634

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +  + R      ++   +   +  +  +      EL   E+ ++ V++       
Sbjct: 635 ATAGGVVKRVRPDYPGGKDSFEVITLADGDELVGA---VELATGEEDLVFVTDAAALLTY 691

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV---------SDKGTLI 863
           S+   R   RSG G+    V +   +    AV   +++  ++ V         +D GT+ 
Sbjct: 692 SASLVRPQGRSGSGVAGIKVPEGQRVLGFAAVPAASEDAMVVTVAGSSGALPGTDAGTVK 751

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDE 889
             P++      RAT GV      K E
Sbjct: 752 VTPLSAYPAKGRATAGVRCHRLLKGE 777


>gi|262282824|ref|ZP_06060591.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
 gi|262261076|gb|EEY79775.1| DNA topoisomerase IV subunit A [Streptococcus sp. 2_1_36FAA]
          Length = 816

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/888 (31%), Positives = 452/888 (50%), Gaps = 83/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     +  D+++++      +D++L TK G  +RF I  +    G  + GV+ I
Sbjct: 628 KSKSLKFAKLKNEGDQVIALAPIK-LDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAI 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D +++  I          +   +K M+     ++        +  +   + +   
Sbjct: 686 NLKKDDVLVAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVF 745

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                      F L  +E                                          
Sbjct: 746 VAGPVFGEAVDFDLFTTE----------------------------------------AE 765

Query: 848 NDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              +QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 766 ASEEQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813



 Score = 99.5 bits (246), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 80/558 (14%), Positives = 167/558 (29%), Gaps = 37/558 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K      V+  +   +     V +I     N + A    ++   +  
Sbjct: 235 RVVVRSRTEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I     +   
Sbjct: 295 GLRIAIELKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIILARSRFDKAKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +     +              V  T+ G ++R   
Sbjct: 464 KRELRDVKKKFGNP------RLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          M     D ++ V        +L+ T LG  +  P+  +     +   
Sbjct: 518 RSFSASTLEE---MGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRWKEIG 574

Query: 723 GV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               + I +    ++VI   ++   +         +  +    R          S     
Sbjct: 575 EHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTYKSKSLKF 634

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +   N  ++      +K   ++ V++ G+  R +  +  +      G++A ++    +  
Sbjct: 635 AKLKNEGDQVIALAPIKLDDVMLVTKNGYALRFNIEEVPVIGAKAAGVKAINLK---KDD 691

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERIR 898
            LVA F  N  D + L++ +G+L R+ V +I + SRA +G+ +          V V    
Sbjct: 692 VLVAAFIAN-TDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFVAGPV 750

Query: 899 ESEIVD------EAESTE 910
             E VD      EAE++E
Sbjct: 751 FGEAVDFDLFTTEAEASE 768


>gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
 gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           ATCC 49296]
          Length = 826

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/885 (31%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  I  AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEINKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +EK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIR-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D + +  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKADDALQAAFICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +   V
Sbjct: 747 LAGA-----------VAEQGFV-----------------------------GDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 140/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V+       +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 644 QIVAVAPIRLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAA 697


>gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
 gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC
           6249]
          Length = 826

 Score =  634 bits (1635), Expect = e-179,   Method: Composition-based stats.
 Identities = 285/885 (32%), Positives = 458/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSALEDTANVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     + +    AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITSFETNEEILYAEVVD--QFEDAITYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D + S  I                  S       G  + ++  +  ++       
Sbjct: 687 NLKEDDVLQSSFI--------------CNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGL 732

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           +  +ELK K   +               +        +G+           G L +   V
Sbjct: 733 QVLRELKNKPHRVFLAGA--------VAE--------QGLI----------GDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/534 (12%), Positives = 142/534 (26%), Gaps = 78/534 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E    ++              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSALEDTANVIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++         
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITSFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVVDQFEDAITYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|302023679|ref|ZP_07248890.1| DNA topoisomerase IV subunit A [Streptococcus suis 05HAS68]
 gi|330832704|ref|YP_004401529.1| topoisomerase IV subunit A [Streptococcus suis ST3]
 gi|329306927|gb|AEB81343.1| topoisomerase IV subunit A [Streptococcus suis ST3]
          Length = 817

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/887 (31%), Positives = 444/887 (50%), Gaps = 86/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNAS-----TLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   L        +  + F E   ++        T++G ++R +  +F      
Sbjct: 571 KDIGEHLSQTL---MNFDTSEEIIFAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   ++++   +    +DI+L T+ G  +RF I  +    G  + GV+ ++
Sbjct: 628 KSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEV-PIIGAKAAGVKAVN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V++  I   +      +    K M+ +   ++   +    +  +   + +    
Sbjct: 687 LKDGDVVVAAFISNTSSVYLLTQRGSFKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  +  F L  +                                            
Sbjct: 747 AGPVLTDQGDFDLFSTAN------------------------------------------ 764

Query: 849 DND---QII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++   QI+ + S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 765 EDETTSQILHVQSKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 74/260 (28%), Gaps = 38/260 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T    +++        F     S           EI +     +E   +  TK G   R 
Sbjct: 458 TMFNLMKKELREVKKQFGNPRLSELQ--DQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S +     R             DQ+I   +     H     +      + +  
Sbjct: 516 SPRSFNASTLEEMGKR-----------DDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
              +   D  E  S    +                +E     V++ G  KR    +F   
Sbjct: 565 LTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGTYFAVTQYGQIKRVERKEFTP- 623

Query: 821 NRSGKGIRATDVSK------INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
                  R             +    ++ V PV  +D I+L+++KG  +R  + E+ I  
Sbjct: 624 ------WRTYKSKSTKYAKLKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIG 676

Query: 875 RATKGVVIFSTAKDERVVSV 894
               GV   +    + VV+ 
Sbjct: 677 AKAAGVKAVNLKDGDVVVAA 696



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 16/131 (12%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +   +    E     L ++E+  ++V++ G+ KRTS   F  S          +     +
Sbjct: 481 ELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNAS--------TLEEMGKRD 532

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR---IASRATKGVVIFSTAKDERV 891
              L+ +        ++L ++ G +I  PV    +IR   I    ++   + +    E +
Sbjct: 533 DDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQ--TLMNFDTSEEI 590

Query: 892 VSVERIRESEI 902
           +  E +   E 
Sbjct: 591 IFAELVENFEE 601


>gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
 gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           lugdunensis M23590]
          Length = 800

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/888 (31%), Positives = 464/888 (52%), Gaps = 102/888 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL D+ K+TV F  NYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNP+I +  LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGIIQGVDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+VVTE+PY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 TEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N L++ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVVV RTK+
Sbjct: 305 KEANSEAIKNYLFKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVVNRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVA---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   ++ Q  AI+ L+L RLT     +++NE   L   IKE   IL +  
Sbjct: 409 ----------TYGFTDAQAEAIVMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++    + R + I      + ++ E  +  ED++++V+  GY+KR   
Sbjct: 459 ALLTVIKNELKDIRKRFKSERLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        S + ++  D +     V+T  ++L F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  ++++        I+    +++     + + AT++G ++++    F     +  
Sbjct: 574 LGQHVSQLVAIE---EDEYIINVYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKP 630

Query: 674 I-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + AMK+  +DEI+SV+  T++  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LVAMKVKPQDEIISVQRLTEDQIITVLTHKGMSLTYNTNEL-SDTGLRAAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+   +V                                                   
Sbjct: 690 DFVVMTEVVE-------------------------------------------------- 699

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851
                Q I+  +++G  KR      +++ R+ +GI      K N    +VA   V +N  
Sbjct: 700 ---AGQTIIMATQRGAIKRIDFKVLQLAKRAQRGITLLKELKKNPH-RIVAGHVVTENQS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + I+ S+     G ++     +I  + + T G  I  T +   V+++ 
Sbjct: 756 EYIIYSESHVEEGLIV-----DIHKSEQYTNGSFIVDTTEFGEVINMT 798



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 17/244 (6%)

Query: 659 RNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    F     S   A +     D+ + V     E+ I+  T  G   R   ++ R F 
Sbjct: 469 KDIRKRFKSERLSAIEAEIAEIKIDKEVMVP---SEDVIMSVTAQGYIKR---TSTRSF- 521

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITS 774
             N+ GV  I L +GD+++    V   D      ++       +         +  +  S
Sbjct: 522 --NASGVSEIGLKQGDRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVS 579

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                  +  I     ++   +E F +  +  G  K++ +  F+ + R  K + A  V  
Sbjct: 580 QLVAIEEDEYIINVYNEKNFQQEAFYIMATRNGMIKKSHAGLFKTT-RYTKPLVAMKVKP 638

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                 +++V  + ++  I +++ KG  +    NE+        GV   +   ++ VV  
Sbjct: 639 ---QDEIISVQRLTEDQIITVLTHKGMSLTYNTNELSDTGLRAAGVKSINLKVEDFVVMT 695

Query: 895 ERIR 898
           E + 
Sbjct: 696 EVVE 699


>gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  634 bits (1634), Expect = e-179,   Method: Composition-based stats.
 Identities = 285/885 (32%), Positives = 456/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           E     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVLE--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D + S  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKEDDVLQSAFICNTSSFYLLTQRGSLKRVSTEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +   V
Sbjct: 747 LAGA-----------VAEQGFV-----------------------------GDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DGNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 68/535 (12%), Positives = 141/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V+       +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      E           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVLEQFDDATTYFAATRLGQIKRVERKEFTPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSA 697


>gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 645

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 302/622 (48%), Positives = 424/622 (68%), Gaps = 26/622 (4%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           +V I DE++ +YL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+     + K ARI
Sbjct: 42  NVYIEDEIKAAYLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSEMGMSHKTPFKKSARI 101

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++++Y A+ RMAQD+++R  LI+G GNFGS+DGD  AA RYTE R+ K
Sbjct: 102 VGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDGDEAAAMRYTEARMAK 161

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
               LL D+GKDT+D+R N+D S  EPVVL A+ PN+L+NG  GIAVGMATNIP HNLGE
Sbjct: 162 ITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGIAVGMATNIPPHNLGE 221

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           VVDG VA+IDNP+I +D L+  I+GPDFPTG +I G+ GI +AY TGRG + + G   +E
Sbjct: 222 VVDGIVALIDNPEISIDELITYIKGPDFPTGGIINGKQGIYDAYRTGRGKLRVAGRVEVE 281

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +   +E I+VTE+PYQVNKA ++EKIA+LVR+K+I  I+DLRDE+DR G R+VIELK+G
Sbjct: 282 TSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRDETDRDGIRIVIELKKG 341

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +++ILN LY++T LQ+ F V M+AL    P    L  +L+ ++  R EV+ RRT++ L
Sbjct: 342 EESELILNSLYKFTDLQNTFGVIMLALVDNAPRVLNLKQVLQKYLEHRFEVITRRTEFEL 401

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            KA++RAH+L G  IA+ N++EV+RIIR S +   AR EL+ +                 
Sbjct: 402 KKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIAK----------------- 444

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       SE+Q +AIL++RL RLTGL RD I  E N L + I+E   ILS  S++
Sbjct: 445 ---------FGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKI 495

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
            GIIK+E L +K++    RRT I     ++  ED I  E++VVT++  GYVKRV +  YR
Sbjct: 496 YGIIKEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYR 555

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           +Q+RGG G +     ++D V D++I  T  ++L F++ G V+  KV+ +P    QARGK 
Sbjct: 556 SQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGKL 615

Query: 618 LINILSLNQGERITTIMPFPED 639
           + NI++L+  E+++TI+   E 
Sbjct: 616 IGNIINLDTDEKVSTIIRVREF 637



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +  +   +E    +  + +    +E   ++L   E+ ++T++EKG+ KR +   +R   R
Sbjct: 500 KEEALKLKEDFGDERRTEIRNARAEISIEDLIKDEEVVVTLTEKGYVKRVAIDTYRSQKR 559

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGV- 880
            G G+ AT+  +      +V    +    D +++ + KG +  V V EI    +  +G  
Sbjct: 560 GGIGVNATNTIE----DDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGKL 615

Query: 881 --VIFSTAKDERVVSVERIRESE 901
              I +   DE+V ++ R+RE E
Sbjct: 616 IGNIINLDTDEKVSTIIRVREFE 638



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 6/109 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           +   VV  T+ G V+R  +  +    R   G  A      D +  +      + +L+ T 
Sbjct: 533 DEEVVVTLTEKGYVKRVAIDTYRSQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTT 592

Query: 702 LGQCVRFPISAIRVFAGRNSVG-VRG--ISLAKGDQVISMAIVLHADAD 747
            G+     +  I    G+ + G + G  I+L   ++V ++  V   + +
Sbjct: 593 KGKVFSVKVYEI-PETGKQARGKLIGNIINLDTDEKVSTIIRVREFEKN 640


>gi|324994507|gb|EGC26420.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK678]
          Length = 816

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 281/887 (31%), Positives = 447/887 (50%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +  LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVGKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S    +         +   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTISNFDTKEEVIYTELLD---SFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E                                           
Sbjct: 747 AGPVFGEAVDFDLFTTE----------------------------------------AEA 766

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              QI+ ++S+KGT   + + ++ ++ R + G  I  T  DE V S 
Sbjct: 767 SEKQILQVLSNKGTAYEINLADLSLSERTSNGSFISDTISDEEVFSA 813



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
               F  S +     R             D++I ++                        
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFVSPAKTTQHLLIFTSLGNVIYRPVHE 564

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQEL---KLKEQFILTVSEKGFGKRTSSYDF--- 817
           L     +EI    + +    +  EE          +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
 gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus
           parasanguinis ATCC 15912]
          Length = 817

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 284/888 (31%), Positives = 450/888 (50%), Gaps = 80/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+AD+ILN L++YT LQ  ++ NMVA++ Y P +  ++ IL +++A R +++V R+
Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAIDNYTPRQVGIVPILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  +L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK     PRR+ + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKLFGNPRRSELQDTAKTIEIDTASLIVEEETFVSVTRAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG      +  L     
Sbjct: 516 SPRSFNAS-----TLEEVGKRDDDELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL---SDFIQI 668
           +  G+ L   L+  + E     + F E    +  +    AT+ G ++R +    S +   
Sbjct: 571 KDIGEHLSQTLTNFEQEEE---ILFAEVVDQFEGVTYFAATQQGQIKRFERKELSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   K+  +++ +         DI++ TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 RSKSTKYAKIKDQEDRIVAVAPVVFEDIMIITKNGYGLRFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GDQV +             +   +K M      ++   +    +  +   + +   +
Sbjct: 687 LKDGDQVAATFKSTTPSMYILTQRGSLKRMLQDDIPVTSRAKRGLQVLRELKNKPHRVFK 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +  F L          TS  +                              V 
Sbjct: 747 AGPVFTDQGDFDLF---------TSQEE------------------------------VG 767

Query: 849 DNDQIILVSD-KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           + DQI+ ++   G +  V + ++ I+ R + G  +  T  D+ V S  
Sbjct: 768 EQDQILAITSTTGQVTEVDLTQLSISERTSNGSFVNDTISDQEVFSAT 815


>gi|170078543|ref|YP_001735181.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
 gi|169886212|gb|ACA99925.1| DNA topoisomerase chain A [Synechococcus sp. PCC 7002]
          Length = 845

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/905 (31%), Positives = 438/905 (48%), Gaps = 106/905 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I   ++  EM+ SY+ YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y
Sbjct: 16  QSGHIIPTALHVEMEQSYMEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLSPDRPY 75

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ ++YDAL R+ QD+S R  L+ G GNFGS+D DPPAA RYT
Sbjct: 76  RKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSTRYPLLAGHGNFGSIDNDPPAAMRYT 135

Query: 132 ECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +   +L  + +D VDF  N+DGS QEPVVL  + P +L+NG  GIAVGMATN+
Sbjct: 136 ETRLSPVSFEAMLAQISEDIVDFTDNFDGSQQEPVVLPVQLPILLLNGSSGIAVGMATNM 195

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVDG +A+ID+P+I+ + L  +I  PDFPTG  I+   G+++AY TGRG I +
Sbjct: 196 PPHNLGEVVDGLIALIDDPEIEDEKLWAVIPAPDFPTGGEIVDLAGVRDAYRTGRGIIPM 255

Query: 251 RGVSHIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+ H+E      K   D   +VVTE+PYQVNKAA +EKIA+LV + +I  I+D+RDESD
Sbjct: 256 RGIVHLEVLQVGRKRKRDVNALVVTELPYQVNKAAWIEKIADLVNDGKISGISDIRDESD 315

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           RQG RVVIELKR A  + +L  LY+ T+LQS F   +++L   +P + +L  IL+ F+ F
Sbjct: 316 RQGMRVVIELKRDAEPEKVLKLLYKKTALQSNFGAILLSLVNNQPRQLSLKAILQEFLEF 375

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           REE V R+ +Y L +   R H + GL +A+ NLD V+ I+R + +  TA+++        
Sbjct: 376 REETVTRQYRYELEQKETRQHSVEGLLLALNNLDAVIEILRNAADGTTAKQQF------- 428

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 +  SE Q+ AIL + + RLTGL R  +  E   L  EI
Sbjct: 429 -------------------QAALGFSESQSDAILAMPMRRLTGLERQKLEQESTELATEI 469

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            +   +LS R  LL  +K+EL S+K +   PRRTR+ +      +   +  E      + 
Sbjct: 470 AKLNKLLSDRHELLKALKRELRSLKRKFADPRRTRLPDVPSPEPEPVTVEAEPDTPAATP 529

Query: 545 LG----------------YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                              +         A      G     + DE+       + T   
Sbjct: 530 KKKRQSRKKEEPVLALLPQLTETSHVAIAASGGVYWGNDDAGLLDEEPTIFKAQIGTQKK 589

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           ++  +  G  +   +  LP    + + + LI++L  +        +       +     +
Sbjct: 590 LIVCTDQGKAFPVAIADLPYQEQRDKPQ-LIDLLPDHALRDDHQPITQFLLPDNLAEYDL 648

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +  T  G ++R    +       G   +KL  +D +           + +    G+ +  
Sbjct: 649 LLLTAQGRIKRLPAIELESFTSRGLSLIKLKDKDTLKFACFVKGGEQVAIAVSSGRVLHL 708

Query: 709 PISA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           P++       GR S G + + L   +Q+++                              
Sbjct: 709 PVNDHEIPVMGRTSQGNQALRLRFNEQIVAC----------------------------- 739

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                        V      E     +      L  S    GK           R   G 
Sbjct: 740 -------------VPCQRHNELYLISEEGYGKKLAASSLRLGK-----------RGDMGN 775

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
                   ++   L+ +F  +  + +++   +  L  +P ++  +  + + G  +   + 
Sbjct: 776 HVMRF--ESKTDLLLTLFVPDQQESLLVKDSQENLDLLPFSKFNLTEKDSPGQKLVKLSG 833

Query: 888 DERVV 892
            +R+V
Sbjct: 834 GDRLV 838



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIG 839
            +     +      L E  +L ++ +G  KR  + +    ++R   G+    +       
Sbjct: 629 DDHQPITQFLLPDNLAEYDLLLLTAQGRIKRLPAIELESFTSR---GLSLIKLKDK---D 682

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVS 893
            L     V   +Q+ +    G ++ +PVN+  I +  R ++G        +E++V+
Sbjct: 683 TLKFACFVKGGEQVAIAVSSGRVLHLPVNDHEIPVMGRTSQGNQALRLRFNEQIVA 738


>gi|81428586|ref|YP_395586.1| DNA topoisomerase IV subunit A [Lactobacillus sakei subsp. sakei
           23K]
 gi|78610228|emb|CAI55277.1| Topoisomerase IV, subunit A [Lactobacillus sakei subsp. sakei 23K]
          Length = 821

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 282/893 (31%), Positives = 452/893 (50%), Gaps = 96/893 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K 
Sbjct: 3   DEAQKIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMAIDGNTYDKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+A+ R++QDW LR  LIE  GN GS+DGDPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L D+ K TVDF  N+D + +EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSKIASEMLKDIDKKTVDFVLNFDDTAEEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV DG V +ID+PD  L+ +M  ++GPDFPTG ++ G  GIK AY TGRG +V+
Sbjct: 183 PPHNLGEVTDGLVYLIDHPDATLEKMMTFVKGPDFPTGGILQGLDGIKKAYETGRGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I++  G+REQIV++EIPY+VNKA M++KI EL   K++  I+++RDESDR G  V
Sbjct: 243 RAKTSIQQLHGNREQIVISEIPYEVNKAQMVKKIDELRVLKKVDGISEVRDESDRMGLSV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A +  ILN L++ T LQ  ++ NMVA++  +P++  L+ IL A++  +EEVV 
Sbjct: 303 VIELKKQADSQGILNYLFKNTDLQITYNFNMVAISDMQPKQVGLLEILHAYLKHQEEVVT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DR H++ GL  A++ LD+V+  IR S N + A+  L+ +          
Sbjct: 363 RRTQYSLQKAQDRLHIVAGLVKALSILDQVISTIRASKNKKDAKTNLVAQ---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      +  E   L   +     I
Sbjct: 413 ----------------YDFTEAQAEAIVSLQLYRLTNTDVTALEAEAAELKTAVAGYQAI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +IK EL SV       R+T I   +   +++    ++ E ++V VSH GY+
Sbjct: 457 LGNPKELARVIKAELKSVVKAYRNDRKTEIEAEIETLEIDTSVTVIDETVMVAVSHDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A            +++ DF      + T   ++ F++ G + +  V  +  
Sbjct: 517 KRSSLRSYQASEGAD-----GGLKEGDFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIAD 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   + L   E    I+       +  + Y V  T  G +++    D +  
Sbjct: 572 LKWKEMGEHISQSIGLAADE---AIIAAFSFTPNEQSGYFVIGTTDGYIKQTAFQDLLPS 628

Query: 669 NRSGKIA---MKLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPISAIRVFAGRNS 721
                 A   +KL +   + +V   ++ +     I   +  G  + F ++ +   +G  +
Sbjct: 629 RTYRSKAQDFIKLHAGANVTNVYWVSETDAQQQAIFSASYNGYGLSFALNEV-SVSGAKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ + L  GD V +  +   A+                                    
Sbjct: 688 GGVKLMDLKDGDHVANFTLFDPAEKHAAVA------------------------------ 717

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                ++++G  KR    +  +++R+ +G+      K +    +
Sbjct: 718 --------------------IITQRGAFKRMFLSEVGLTSRARRGVLILRELKRDPH-RV 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            A+  V     +++ +++  L+ +         R + G  +    +  + V V
Sbjct: 757 AAMVRVAPKIALLVKTEQA-LLTIDPQAHATGDRYSNGSFVMDVEEVGQPVFV 808



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 85/253 (33%), Gaps = 23/253 (9%)

Query: 659 RNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++ +  +    ++   A ++    D  ++V     E  ++  +  G   R  + + +   
Sbjct: 472 KSVVKAYRNDRKTEIEAEIETLEIDTSVTVI---DETVMVAVSHDGYLKRSSLRSYQASE 528

Query: 718 GRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           G +        L +GD  I    M  +       +      + +     L   +  E  S
Sbjct: 529 GADGG------LKEGDFAILQQPMQTLDQLMLFTNYGHLIQRPVHEIADLKWKEMGEHIS 582

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDV 832
                + +  I          +  + +  +  G+ K+T+  D     + R     +A D 
Sbjct: 583 QSIGLAADEAIIAAFSFTPNEQSGYFVIGTTDGYIKQTAFQDLLPSRTYR----SKAQDF 638

Query: 833 SKINEIGALVAVFPVNDNDQ----IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            K++    +  V+ V++ D     I   S  G  +   +NE+ ++     GV +      
Sbjct: 639 IKLHAGANVTNVYWVSETDAQQQAIFSASYNGYGLSFALNEVSVSGAKAGGVKLMDLKDG 698

Query: 889 ERVVSVERIRESE 901
           + V +      +E
Sbjct: 699 DHVANFTLFDPAE 711


>gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
 gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A]
          Length = 824

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 289/880 (32%), Positives = 454/880 (51%), Gaps = 104/880 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I S S+  EM++SYL YA++VI+GRA+PD RDGLKPVHRRIL+ M ++G+   + +
Sbjct: 9   KTGKIISTSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPF 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL RMAQD+S R  L+ G GNFGS+D DPPAA RYT
Sbjct: 69  RKCARVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYT 128

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   A+  +L ++G++ +DF  N+D S QEP+VL  + PN+LVNG  GIAVGMATNI
Sbjct: 129 ETRLSSIANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE++DG +A+++ P++  + L +II GPDFPTG  I+   GIK+AY  G+G I +
Sbjct: 189 PPHNLGELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQTEGIKDAYRDGKGIIRV 248

Query: 251 RGVSHIEKTSGD------REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGV  IEK +        R  +++TE+PYQVNKAA +EKIA+LV   R+  IAD+RDESD
Sbjct: 249 RGVVSIEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESD 308

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G RVVIELKR A   ++L +LY+ T+L+  F   M+AL   +P++ +L  +L+ F++F
Sbjct: 309 RTGMRVVIELKRDAVTKLVLKELYKKTALEHNFGAIMLALVDNQPQQLSLRSLLEEFLSF 368

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           RE+ + R+    L   +D++ +L GL IA+ANLD+V+ I+  S +   A+ +  +     
Sbjct: 369 REKTLNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKE---- 424

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                 + L+E Q   IL + + RLTGL R  I  E   L I++
Sbjct: 425 ----------------------LGLNEKQANGILAMPMRRLTGLERKKIETEYEELQIKV 462

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
            +   +L +R   L  +K+EL S+K +    RRTRI   +       E   +       +
Sbjct: 463 NKLEILLKNRKEFLAELKKELRSLKKKYGDKRRTRIIGKDTTKINNIETQKLDVPKQPIL 522

Query: 543 SHLGYVKRVP-----------LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
                +   P           +     Q      +      +   +    I+     ++ 
Sbjct: 523 QSKKKISHTPKQLNLNLSKDSILEMTYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIV 582

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +  G  Y  K+  +P      +   LI++L  N  +   +++       +  N  ++  
Sbjct: 583 ITDNGKAYPIKILDIP--YIDVQSTFLISLLPENAQKDTKSVISIFFLTKNVENRNLLLL 640

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI- 710
           T  G ++R +LS+   +   G   MKL + D +  +    +E++I++    G+ +RF + 
Sbjct: 641 TNQGKIKRIQLSELNSLTNRGLSLMKLKNDDFLKYISFVKEEDEIVIAITSGRLLRFQMK 700

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +       RN+ G +   L   ++++    +   D                         
Sbjct: 701 NEEIPVMNRNTQGEQAFRLRSKEEIVGCINMNKKDD------------------------ 736

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                        IL VS+ G+GKR +  D RI+     G +A 
Sbjct: 737 -----------------------------ILLVSKLGYGKRLNVLDLRITKLGDIGTQAL 767

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
               I++  +L+ +   +D   I ++++K  +I   + E+
Sbjct: 768 KF--IHQADSLLGIKVSSDIRNINILTNKNRVITTEITEV 805



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVS 833
            +N      ++         ++ + +L ++ +G  KR    +   ++NR   G+    + 
Sbjct: 612 PENAQKDTKSVISIFFLTKNVENRNLLLLTNQGKIKRIQLSELNSLTNR---GLSLMKLK 668

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERV 891
             +    L  +  V + D+I++    G L+R  +   EI + +R T+G   F     E +
Sbjct: 669 NDDF---LKYISFVKEEDEIVIAITSGRLLRFQMKNEEIPVMNRNTQGEQAFRLRSKEEI 725

Query: 892 VS 893
           V 
Sbjct: 726 VG 727



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/173 (9%), Positives = 66/173 (38%), Gaps = 18/173 (10%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L +          +    ++  ++    +   + +               E+  + + I
Sbjct: 521 ILQSKKKISHTPKQLNLNLSKDSILEMTYQGEVAWRKPEDRGFENKLLIYSEIIGEREQI 580

Query: 801 LTVSEKGFGKRTSSYDFR---ISNRSGKGIRATDVSKIN---EIGALVAVFPVN---DND 851
           + +++ G        D     + +          +   N   +  +++++F +    +N 
Sbjct: 581 IVITDNGKAYPIKILDIPYIDVQS-----TFLISLLPENAQKDTKSVISIFFLTKNVENR 635

Query: 852 QIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++L++++G + R+ ++E+  + +R   G+ +     D+ +  +  ++E + +
Sbjct: 636 NLLLLTNQGKIKRIQLSELNSLTNR---GLSLMKLKNDDFLKYISFVKEEDEI 685


>gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 286/887 (32%), Positives = 454/887 (51%), Gaps = 87/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA +RDESDR G R+  E
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAFE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +     V T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFAQAVKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +       T+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVVD--QFDDATTYFAVTRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
               +K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKTVKYAKLKDETDQIVAVAPIK-LDDVLLISRNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D + S  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKEDDVLQSAFICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP- 846
                          V+E+GF                                +V +F  
Sbjct: 747 LTGA-----------VAEQGF--------------------------------VVDLFST 763

Query: 847 -VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            V+ NDQI+LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 764 EVDGNDQILLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 69/225 (30%), Gaps = 30/225 (13%)

Query: 683 EILSVETCTQENDILLTTKLGQCVR-----FPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           EI +     +E+  +  TK G   R     F  S +     R             D++I 
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR-----------DDDRLIF 538

Query: 738 MAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
              V              + Y               E ++    +      I      + 
Sbjct: 539 AQAVKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQ 598

Query: 794 KLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSK-INEIGALVAVFPVND 849
                    V+  G  KR    +F   R         +    +K  +E   +VAV P+  
Sbjct: 599 FDDATTYFAVTRLGQIKRVERKEFTPWRTYK-----SKTVKYAKLKDETDQIVAVAPIKL 653

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 654 DD-VLLISRNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSA 697


>gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  633 bits (1633), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/883 (32%), Positives = 455/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|282854006|ref|ZP_06263343.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|282583459|gb|EFB88839.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J139]
 gi|314966750|gb|EFT10849.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA2]
 gi|314981083|gb|EFT25177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA3]
 gi|315091909|gb|EFT63885.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA4]
 gi|315093334|gb|EFT65310.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL060PA1]
 gi|315103410|gb|EFT75386.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA2]
 gi|327327575|gb|EGE69351.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1]
          Length = 844

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 277/842 (32%), Positives = 404/842 (47%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+PD DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E   
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERGE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I+S  + L  ++  EL  V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPSGGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGEGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L   DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKDGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   +E          L  +   +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGEGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  + +   +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKDGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 803

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 278/882 (31%), Positives = 452/882 (51%), Gaps = 105/882 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR +        + ++ E  +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A       +  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNASG-----KEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 674 I-AMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + AMK+   D ++SV     +     I L T  G  + +P+S +    G  + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSEL-PDTGLRATGIKAINL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+                                                     
Sbjct: 690 KDEDHVV----------------------------------------------------- 696

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    E  IL  +++G  KR S    + + R+ +GI      K      +VA      
Sbjct: 697 LADHIQTEDTILIATQRGALKRISFKVLQQAKRAQRGITLLKELKKQPH-RVVAARVCRP 755

Query: 850 ND-QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTA 886
              Q  LVS +    G +      +I ++ + T G  +  T+
Sbjct: 756 EQSQYRLVSQQDETTGLI-----KDIHLSEQYTNGSFVVDTS 792



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 85/212 (40%), Gaps = 16/212 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD---YDERICY 754
             T+ G   R   +++R F   N+ G   I L + D V+ +      D      ++    
Sbjct: 506 SLTQEGYIKR---TSLRSF---NASGKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYL 559

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +     +   D  +  S       +  + +         E+ I+T + +G  K++  
Sbjct: 560 LIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITATRQGMIKKSLL 619

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQII-LVSDKGTLIRVPVNEIR 871
             F+ + R+ K + A  V +     AL++V  V  +   Q+I L++ +G  +  P++E+ 
Sbjct: 620 SGFKST-RTTKPLVAMKVKE---SDALISVMLVPADASSQLITLLTHRGMSLTYPMSELP 675

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                  G+   +   ++ VV  + I+  + +
Sbjct: 676 DTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707



 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  +   + +   E  +L+++++G+ KRTS   F  S +   G++        E  
Sbjct: 484 EEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK--------ERD 535

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVER 896
            ++ +   N  D  ++ ++KG  + +PV+++        G     I    +DERVV    
Sbjct: 536 GVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYT 595

Query: 897 IRESEIV 903
           + E    
Sbjct: 596 VSEFNDE 602


>gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae]
          Length = 823

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 276/883 (31%), Positives = 451/883 (51%), Gaps = 79/883 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +    +   +    +  +  ++      
Sbjct: 688 LKEDDVLQSAFICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRE--LKNKPHRV 745

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                  +++F+                                      G L +     
Sbjct: 746 FLAGAVAEQEFV--------------------------------------GDLFSTEVEE 767

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++  +++ S+KGT+  + + ++ ++ R + G  I  T  DE V
Sbjct: 768 NDQTLLVQSNKGTIYEIRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/534 (12%), Positives = 143/534 (26%), Gaps = 76/534 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 645 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSA 697


>gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43]
          Length = 969

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 294/937 (31%), Positives = 464/937 (49%), Gaps = 85/937 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ 
Sbjct: 9   PRDNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RY
Sbjct: 69  YYKSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNI
Sbjct: 129 TEARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV DG +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  
Sbjct: 189 PPHNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILIGKNSLRSAYESGVGKVAY 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  ++IEK    R  I +TE PY+ NKA +L+ I+E+  ++R       I+D+RDESDR 
Sbjct: 249 RAKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRN 308

Query: 307 GYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIELK      SA+ IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V 
Sbjct: 309 GIRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKDMIRHYVN 368

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E+V RR++  L  A+ R H++ G   A+  LDEV+ IIR S + + A   L+++   
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEK--- 425

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +  Q +AILEL L RLTGL       E   L   
Sbjct: 426 -----------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKI 462

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVT 541
           IK    ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T
Sbjct: 463 IKRLEKILSNEKELLKVIKFELKEISDKYGDERKTNIIEDDAKSKIDIEELIIVEEVMIT 522

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++KR+P+  Y            +  R+ D +  L   +T  S+L F+  GF+Y+ 
Sbjct: 523 LSKDGFIKRIPVKNYIRSNS---NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQV 579

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +P    + +G+ L  I+  +       I+     ++   N    F TK G ++ + 
Sbjct: 580 KGINIPELKWKEKGERLDTIIK-SLNLEDEKIVEVISVDNFNPNKIFRFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F         A+KL  +D +L+V+        + + + TKL       +  +     
Sbjct: 639 LDKFETSYGK-LQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPELENVP- 696

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH--------------------- 757
           RN + ++  +L+  D++I +      +          K+                     
Sbjct: 697 RNILPIQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSK 756

Query: 758 --------------MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                              + I     ++     +   +  I              + + 
Sbjct: 757 TLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGELEKKEKIIRISSISSYNDNLALYSF 816

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTL 862
           S+KG  K+T   +F++     +      +   +    +++V   N     +I+++ KG  
Sbjct: 817 SKKGLVKKTLLNEFKV---DTQKQFFYKLKTED--DEVISVDINNITLGNLIIITKKGMA 871

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           IR PV  +    +   GV   S  +++ V+    + +
Sbjct: 872 IRFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSK 908



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           ++  ++L FS+ G++YK   + L           +   +   + E+   I+      S  
Sbjct: 753 NSSKTLLLFSNKGYIYKIPGFLL----KNIMNGDIKLEVFTGELEKKEKIIRISSISSYN 808

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKL 702
           +NL +   +K G V++  L++F    +           DE++SV+       ++++ TK 
Sbjct: 809 DNLALYSFSKKGLVKKTLLNEFKVDTQKQFFYKLKTEDDEVISVDINNITLGNLIIITKK 868

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQ 761
           G  +RFP+  +    G+ + GV GISL + D+VI    +  + D + +  I   +     
Sbjct: 869 GMAIRFPVENVNSM-GKVASGVTGISLREEDEVIFGAYVSKYLDVNGNTVIISPRSQEIS 927

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
               + +   IT                   +  + + ++ V
Sbjct: 928 LISKANEKLNITVEDIKLQNRAGRGTNVILMIDDELKDVMIV 969


>gi|283458283|ref|YP_003362902.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
 gi|283134317|dbj|BAI65082.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18]
          Length = 841

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 271/837 (32%), Positives = 409/837 (48%), Gaps = 102/837 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM+ S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ ++LRL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQPFALRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAAQALTADLEEDVVDFVPNYDNQFMQPSVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +P+  L  +M+ I GPD PTG  I+G  GI++AY TGRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPEATLKDIMKFIPGPDLPTGGTIVGLGGIRDAYETGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             IE+ S  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VI
Sbjct: 257 VSIEQVSPRKQGIVVTELPYMVGPEKVIEKIKDGVNSKKLTGISDVVDLTDRTNGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G + + +L  LY++T L+  F +N VAL   +P+   L+ +++ ++  R  VV RR
Sbjct: 317 EIKNGFNPEAVLAALYKHTPLEDSFGINNVALVDGQPQTLGLLDLMRVYIDHRLNVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K  DR H++ GL +A+ ++DEV++IIR S     AR +L               
Sbjct: 377 TEFRLGKRTDRLHLVEGLLVAILDIDEVIQIIRESDETAQAREKL--------------- 421

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L++ Q   ILELRL +LT   R ++  E ++L  EI E   ILS
Sbjct: 422 -----------KVVFDLTDTQANHILELRLRQLTKYSRLELEAERDTLQQEIAELQRILS 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC----------------IVRE 536
           S + L  ++ +EL  V +   T RRT++          +                 I  +
Sbjct: 471 SDAALRELVSEELAEVAERYGTDRRTQLKTKDDMQVAIEAVTAQSKAKKSLGLALEIADD 530

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R P    R                 D  T +   +    +   +S G
Sbjct: 531 PCWVLLSASGMMGRTPGKPIREA-----LVDPGKRFKHDVFTSIVPTTARGEIGAVTSAG 585

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            + +  V  + +        ++ + +   +  ++              N  +  AT  G 
Sbjct: 586 RMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPL--NTVLALATAGGV 643

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI-LLTTKLGQCVRFPISAIRV 715
           ++R      +         MKL   DEI++   C  ++ +    T+  + + F  + +R 
Sbjct: 644 IKRLNPDYPLNQTEWD--IMKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTFDAAKVRP 701

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR   G+ GI LA GD++I++ +    DA     +   K   A               
Sbjct: 702 -QGRTGGGIAGIKLADGDRLIALGVTAPGDAAEVVTVTNGKDGLAS-------------- 746

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                             K T+  ++    R+  G+RA   
Sbjct: 747 ---------------------------------AKVTALSEYPQKGRATGGVRAHRF 770



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 30/269 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R       +         K    D   S+   T   +I   T  G
Sbjct: 529 DDPCWVLLSASGMMGRTPGKPIREALVDPGKRFK---HDVFTSIVPTTARGEIGAVTSAG 585

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  I V          +  V+    + LAKG++++++  +    A         
Sbjct: 586 RMVRLSVMDIAVLDENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVLALATAGGVIK 645

Query: 756 K-HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           + +          D  ++       +     +++       ++  +LT           +
Sbjct: 646 RLNPDYPLNQTEWDIMKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTF---------DA 696

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK------GTLIRVPVN 868
              R   R+G GI    ++  + + AL  V    D  +++ V++         +    ++
Sbjct: 697 AKVRPQGRTGGGIAGIKLADGDRLIAL-GVTAPGDAAEVVTVTNGKDGLASAKV--TALS 753

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERI 897
           E     RAT GV        E  +++  +
Sbjct: 754 EYPQKGRATGGVRAHRFLTGESQLALAWV 782



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +G T  + S    + +      E+   L      +   +  G  KR +  D+ ++    
Sbjct: 600 ENGGTPSMASAVKAAELVQLAKGEKLVALVPLNTVLALATAGGVIKRLNP-DYPLNQ--- 655

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 D+ K+ +   +VA  P   +D ++  V+    L+     ++R   R   G+   
Sbjct: 656 ---TEWDIMKLKDDDEIVAAAPCPTDDMVLTFVTRDAKLLTFDAAKVRPQGRTGGGIAGI 712

Query: 884 STAKDERVVSVERIRESEIVD 904
             A  +R++++      +  +
Sbjct: 713 KLADGDRLIALGVTAPGDAAE 733


>gi|222151259|ref|YP_002560415.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
 gi|222120384|dbj|BAH17719.1| topoisomerase IV subunit A [Macrococcus caseolyticus JCSC5402]
          Length = 803

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 283/889 (31%), Positives = 460/889 (51%), Gaps = 101/889 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I S+ + D + + +  Y+  +I  RAIPD+RDGLKPV RRILF M   G  ++K Y 
Sbjct: 2   NENIQSLPLEDVIGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILFAMYAEGNTYDKNYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ RM+QDW LR +L+E  GN GS+D DPPAA RYTE
Sbjct: 62  KSAKTVGNVIGNYHPHGDTSVYDAMVRMSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K A+ LL+D+ K+TVDF  N+D +  EP+VL A YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 AKLSKLANILLEDINKETVDFVQNFDDTAMEPMVLPANYPNLLVNGSTGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++  + VID P+I  D +M+++ GPDFPTG +I+G++GIK AY TGRG I +RG
Sbjct: 182 HNLDEVINATLKVIDKPNISTDEIMKVLPGPDFPTGGIIMGKSGIKQAYETGRGKIQVRG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              IEK  G RE+I+++EIP++VNK+ ++++I EL  +K++  I ++RDE+DR G R+ I
Sbjct: 242 KVDIEKLRGGREEIIISEIPFEVNKSNLVKRIDELRADKKVDGIIEVRDETDRNGLRIAI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A+++ ILN LY+ T LQ  ++ NMVA++  +P+   +  +L +F++ ++EVV RR
Sbjct: 302 ELKKDANSEGILNFLYKNTDLQIAYNFNMVAISDRRPKLLGVRDMLNSFISHQKEVVTRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           ++Y  + A  R H++ GL  A++ LD+V+++IR S N   A+  L+ +            
Sbjct: 362 SQYDYDHAEKRMHIVEGLMKALSILDQVIKVIRNSSNKADAKHNLIHK------------ 409

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      +  E  +L   +K+   IL+
Sbjct: 410 --------------FNFTEAQAEAIVMLQLYRLTNTDIVALEAEHEALKDRLKQLSLILN 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
             + L  +IK+EL +++ E    R ++I E    + +  E  +  E+ V++++  GY+KR
Sbjct: 456 DETHLKKVIKKELKAIQKEFKEERLSQIEEKIAEIKISKEILVPNEETVISITREGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                + A        + + M+++D +      +     L F+  G        +LP   
Sbjct: 516 TSPRSFNASG-----VTDIGMKEDDQLLAYHESNLQHITLVFTDKGRYMYIPNHQLPEIR 570

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G  +  I+ ++  ER+  ++   +  S      ++ AT++G ++ + L DF     
Sbjct: 571 WKDLGTHISQIVPIDSDERVIHMITVTDFNSEVK---ILAATRNGMIKLSSLKDFEVTRY 627

Query: 671 -SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
               I MKL   D + ++   T    IL+ TK G  + + ++ +    G  + GV+ I+L
Sbjct: 628 SRPLINMKLKGNDVVNTIHVVTGSEHILVVTKQGMSLHYSLTELND-TGLKAAGVKSINL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D VI+  I+                                                
Sbjct: 687 KDDDVVITTEIIYP---------------------------------------------- 700

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  E  +L  +++G  K+     F  + R+ +G+      K N    ++  + + +
Sbjct: 701 -------ESSLLIATQRGAMKKMDIQLFEEAKRAQRGLMILKELKSNPH-HIIGAYIITE 752

Query: 850 NDQIILVS----DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +    LVS      G         IR   R T G  I       +VV +
Sbjct: 753 DMAYTLVSEHHEKHGKT-----KAIRKTDRYTNGSFIIDEKDFGKVVKL 796



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 82/216 (37%), Gaps = 15/216 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS--MAIVLHADA 746
               E  ++  T+ G   R   ++ R F   N+ GV  I + + DQ+++   + + H   
Sbjct: 497 LVPNEETVISITREGYIKR---TSPRSF---NASGVTDIGMKEDDQLLAYHESNLQHITL 550

Query: 747 DYDERICYMKHMSAQ-RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
            + ++  YM   + Q   +   D     S       +  +           E  IL  + 
Sbjct: 551 VFTDKGRYMYIPNHQLPEIRWKDLGTHISQIVPIDSDERVIHMITVTDFNSEVKILAATR 610

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA-VFPVNDNDQIILVSDKGTLIR 864
            G  K +S  DF ++ R  + +    +    +   +V  +  V  ++ I++V+ +G  + 
Sbjct: 611 NGMIKLSSLKDFEVT-RYSRPLINMKL----KGNDVVNTIHVVTGSEHILVVTKQGMSLH 665

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             + E+        GV   +   D+ V++ E I   
Sbjct: 666 YSLTELNDTGLKAAGVKSINLKDDDVVITTEIIYPE 701


>gi|253753461|ref|YP_003026602.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|253755713|ref|YP_003028853.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|226237529|dbj|BAH47277.1| topoisomerase IV subunit A [Streptococcus suis]
 gi|251818177|emb|CAZ55975.1| topoisomerase IV subunit A [Streptococcus suis BM407]
 gi|251819707|emb|CAR45533.1| topoisomerase IV subunit A [Streptococcus suis P1/7]
 gi|292558209|gb|ADE31210.1| topoisomerase IV, subunit A [Streptococcus suis GZ1]
 gi|319757994|gb|ADV69936.1| topoisomerase IV subunit A [Streptococcus suis JS14]
          Length = 817

 Score =  633 bits (1632), Expect = e-179,   Method: Composition-based stats.
 Identities = 284/887 (32%), Positives = 442/887 (49%), Gaps = 86/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 406 ----------KISYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNAS-----TLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   L           + F E   ++        TK+G ++R +  +F      
Sbjct: 571 KDIGEHLSQTL---MNFDTNEEIIFAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   ++++   +    +DI+L T+ G  +RF I  +    G  + GV+ ++
Sbjct: 628 KSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEV-PIIGAKAAGVKAVN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V +  I   +      +   +K M+ +   ++   +    +  +   + +    
Sbjct: 687 LKDEDVVAAAFISNTSSVYLLTQRGSLKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  +  F L  +                                            
Sbjct: 747 AGPVLTDQGDFDLFSTAN------------------------------------------ 764

Query: 849 DND---QII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++D   QI+ + S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 765 EDDTTSQILHVQSKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 71.7 bits (174), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 73/545 (13%), Positives = 145/545 (26%), Gaps = 92/545 (16%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  R +    KA  +  V+  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  DS      +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIIIARSKFDKEKAEKRLHIVEGLIRVVSILDE---VIALIRASENKADAKENLKISYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 +           T          ++   
Sbjct: 412 SEEQAEAIVTLQLYRLTNTDIVTL--------ENEEAALREQIQTLAAIIGDERTMFNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     Q           L++ +     +              V  TK G ++R   
Sbjct: 464 KKELREVKKQFGNP------RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI---SAIRVFAGR 719
             F          M     D+++ ++       +LL T LG  +  P+   + IR     
Sbjct: 518 RSFNASTLEE---MGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIG 574

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             +    ++    +++I   +V + +                                  
Sbjct: 575 EHLSQTLMNFDTNEEIIFAELVENFE---------------------------------- 600

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK----- 834
                            E     V++ G  KR    +F          R           
Sbjct: 601 -----------------EGTYFAVTKYGQIKRVERKEFTP-------WRTYKSKSTKYAK 636

Query: 835 -INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +    ++ V PV  +D I+L+++KG  +R  + E+ I      GV   +   ++ VV+
Sbjct: 637 LKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGAKAAGVKAVNLKDED-VVA 694

Query: 894 VERIR 898
              I 
Sbjct: 695 AAFIS 699



 Score = 41.3 bits (95), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +   +    E     L ++E+  ++V++ G+ KRTS   F  S          +     +
Sbjct: 481 ELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNAS--------TLEEMGKRD 532

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR---IASRATKGVVIFSTAKDERV 891
              L+ +        ++L ++ G +I  PV    +IR   I    ++   + +   +E +
Sbjct: 533 DDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQ--TLMNFDTNEEI 590

Query: 892 VSVERIRESEI 902
           +  E +   E 
Sbjct: 591 IFAELVENFEE 601


>gi|49486198|ref|YP_043419.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|81649352|sp|Q6G9K4|PARC_STAAS RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49244641|emb|CAG43072.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 800

 Score =  632 bits (1631), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVVTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVVTEGVSENDTI 704


>gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6]
 gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6]
          Length = 823

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 275/883 (31%), Positives = 452/883 (51%), Gaps = 79/883 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + +EK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 STRSFAAS-----TLEEIGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D+LL ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 KSKSVKYAKLKDDTDQIVAVAPIKLDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKTMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S      +   +    +  +   + +    
Sbjct: 688 LKEDDVLQSAFICNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF                             IG L +     
Sbjct: 748 AGA-----------VAEQGF-----------------------------IGDLFSTDMEE 767

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 768 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 140/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E    ++              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTST 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V+       +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHEL--------- 565

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                                                          E ++    +    
Sbjct: 566 --------------------------------------ADTRWKDIGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   ++  
Sbjct: 588 EEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDDTD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKTMNLKEDDVLQSA 697


>gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
 gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B]
          Length = 813

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 290/836 (34%), Positives = 408/836 (48%), Gaps = 95/836 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  V +  EM+ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M +MG+  ++ +V
Sbjct: 17  DGRVIDVDVAAEMRGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMREMGLRSDRPHV 76

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYT 131
           KCAR+ G+VMGK HPHG+ AIYDAL RMAQ +++ L L++G GNFGS+ G DPPAA RYT
Sbjct: 77  KCARVVGDVMGKLHPHGDMAIYDALVRMAQPFAMWLPLVDGHGNFGSLGGDDPPAAYRYT 136

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECR+  AA  +  DL +D VDF PNYDG   EPVVL A +PN+LVNG  GIAVGMATN+P
Sbjct: 137 ECRMTAAAEAMTADLDEDVVDFAPNYDGQETEPVVLPAAFPNLLVNGASGIAVGMATNMP 196

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV     +++NP   LD LM  + GPD PTG  I+G  G++ AYATGRGS  +R
Sbjct: 197 PHNLGEVVAAARYLLENPQASLDELMRWVPGPDLPTGGEIVGLDGVREAYATGRGSFRMR 256

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
             + IE+  G R+ IVVTE+PY V    ++ +I +LV  K++  IAD+RD +D   G RV
Sbjct: 257 ATARIEEVRGRRKGIVVTELPYGVGPERVVARIKDLVSAKKLAGIADVRDLTDRHHGLRV 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIE+++G     +L+QLY+ T L+  F+VN VAL   +P    L  +L+ +V  R EV  
Sbjct: 317 VIEVRQGFDPQAVLDQLYKLTPLEESFAVNNVALVDGQPRTLGLADLLQVYVGHRIEVTR 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR+ +   +   + H++ G   A+ ++D V+ IIR S +   AR  LM+           
Sbjct: 377 RRSAFRKKRREAQLHIVEGRLRAIVDIDRVIAIIRASDDTAQARDALME----------- 425

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  L+EVQ   IL+L L RLT   + ++  E + L  +I    DI
Sbjct: 426 ---------------TFGLTEVQANDILDLPLRRLTKFSKIELEAERDELRRDIASLGDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L S  RL  ++  EL +V ++  TPRRTR+              I      V +S  G +
Sbjct: 471 LGSEQRLRAVVSAELAAVAEQFATPRRTRLTADDGSPVTSRPLEIPDSPCCVVLSATGLL 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
            R            G           D + D   V+T   V   +S G V +  V  LP 
Sbjct: 531 AR--------TTGPGFPSGDADRARHDAIADAVEVTTRGDVGLITSQGRVLRLPVLDLPS 582

Query: 609 GSPQARGK-----ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                         +  +L L  GE +  + P          L VV AT+ G V+R    
Sbjct: 583 LDDTGPVSLAGGLPVSEVLGLEAGEELVGLTPVS------EQLDVVLATRSGVVKRVSGR 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 +     + L   D ++      T  ++++L T   Q + FP++ +R   G  + 
Sbjct: 637 MPE--RKPDASIIALRPGDRVVGARSVRTGRDELVLITSDAQLLHFPVAELRP-QGFAAA 693

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV GI L+ G  VI  + V  A       I                              
Sbjct: 694 GVAGIHLSDGASVIFFSAVDPARPAVVVTIAGASAALPG--------------------- 732

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                ++ G  K T   +F    R  +G+R     +  + 
Sbjct: 733 ---------------------TQAGSAKVTRFSEFPGKGRGTRGVRCHRFLRGEDT 767



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 27/181 (14%)

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D +     V                      L S D     SL     V   +  E  +E
Sbjct: 549 DAIADAVEVTTRGDVGLITSQGRVLRLPVLDLPSLDDTGPVSLAGGLPVSEVLGLEAGEE 608

Query: 793 LK-----LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-------EIGA 840
           L       ++  ++  +  G  KR S        R           K +           
Sbjct: 609 LVGLTPVSEQLDVVLATRSGVVKRVS-------GR-------MPERKPDASIIALRPGDR 654

Query: 841 LVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +V    V    D+++L++    L+  PV E+R    A  GV     +    V+    +  
Sbjct: 655 VVGARSVRTGRDELVLITSDAQLLHFPVAELRPQGFAAAGVAGIHLSDGASVIFFSAVDP 714

Query: 900 S 900
           +
Sbjct: 715 A 715



 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 40/273 (14%), Positives = 78/273 (28%), Gaps = 44/273 (16%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G + R     F   +            D I      T   D+ L T  
Sbjct: 516 PDSPCCVVLSATGLLARTTGPGFPSGDADRAR------HDAIADAVEVTTRGDVGLITSQ 569

Query: 703 GQCVRFPISAIRVFA---------GRNSVGVRGISLAKGDQVISMA-IVLHADADYDERI 752
           G+ +R P+  +             G     V G  L  G++++ +  +    D     R 
Sbjct: 570 GRVLRLPVLDLPSLDDTGPVSLAGGLPVSEVLG--LEAGEELVGLTPVSEQLDVVLATRS 627

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK--LKEQFILTVSEKGFGK 810
             +K +S +      D   I     D  V          EL     +  +L         
Sbjct: 628 GVVKRVSGRMPERKPDASIIALRPGDRVVGARSVRTGRDELVLITSDAQLLHF------- 680

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS-----------DK 859
                + R    +  G+    +S      +++    V+     ++V+             
Sbjct: 681 --PVAELRPQGFAAAGVAGIHLSDG---ASVIFFSAVDPARPAVVVTIAGASAALPGTQA 735

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS-TAKDERV 891
           G+      +E     R T+GV        ++ +
Sbjct: 736 GSAKVTRFSEFPGKGRGTRGVRCHRFLRGEDTL 768


>gi|229817461|ref|ZP_04447743.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
 gi|229785250|gb|EEP21364.1| hypothetical protein BIFANG_02724 [Bifidobacterium angulatum DSM
           20098]
          Length = 897

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 270/899 (30%), Positives = 426/899 (47%), Gaps = 133/899 (14%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLNP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV+    ++ +PD  L+ LM  + GPD+PTG +I+GR GI+ AYA+GRG+
Sbjct: 192 TNLATHNLGEVVNAAKYLMAHPDATLEELMRYVPGPDWPTGGMIIGRDGIREAYASGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R  +HIE  +  ++ IVVTE+PY V    +LE+I+E V+  ++  I+   D SD   
Sbjct: 252 LSTRATTHIEHVTARKQAIVVTELPYMVGPEKVLERISEGVKNHKLEGISGAIDLSDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK G     +L QL ++T LQ  F++N VAL   +P    L  +L+ ++  R 
Sbjct: 312 GTRLVIELKTGFDPHAVLVQLLKHTPLQDNFAMNNVALVNGRPHTMGLKEMLQVWIDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S N + A+  LM        
Sbjct: 372 VVIRRRSEFRRTKALERLHLVEGLLLALIDIDEVIQVIRSSENADAAKTRLMA------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++ +E + L   I+E
Sbjct: 425 -------------------VFDLDDIQAQYILDLRLRRLTKMSRIELESERDDLHKRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------------------------- 520
              IL+S   L  ++  E+     E  TPRRT +                          
Sbjct: 466 LERILASDKALDRVVVDEMDGAVAEYGTPRRTVLLDADAEGNLTPVVAEGMTGVSASALE 525

Query: 521 -----------------VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP---LSVYRAQR 560
                             +   +      I  +   V +S  G + R     LS++R++ 
Sbjct: 526 AVKSANTVSSAAADVAAAKKAGEQSMALEIEDKPCTVMMSATGLIARATPEALSMFRSRS 585

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA------- 613
             G+         +D +  +F  +T  +    +S G +   +V  LP+            
Sbjct: 586 VSGERA------TDDQIVSIFRTTTRATYALITSAGRLVLAQVADLPVVPATNTLSLSSG 639

Query: 614 ----------------RGKALINILSLNQGERITTIMPFPEDESSWNNL-YVVFATKHGN 656
                           RG+ ++  +++    +  +      D +    L  +   T+ G 
Sbjct: 640 VKADELIGQTESTDPIRGEHVVTAIAMEPVSKKHSDDATDSDTTEPQALPPLAIGTRAGV 699

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V+R        +       + L   DEI+       E+ ++  +     + F    +R  
Sbjct: 700 VKRWNREAPTTM--DSWSVIDLKDGDEIVFAAIARDEDRLVFISTDSSLLTFEAKNVRP- 756

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G+ GI LA+G +V +  +V                            +++    
Sbjct: 757 QGRTAGGMAGIKLAEGCKVAAFNVVA--------------------------ADKVAWTY 790

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            +       +          +   L  +E G  K T    +    R+  G+R+    K 
Sbjct: 791 EEGDNGLTSASGAVVLTVAGDSDALPGTENGAAKVTPFEMYPTKGRATGGVRSQRFLKG 849



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 72/267 (26%), Gaps = 49/267 (18%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +  G + R                 +  + D+I+S+   T      L T  G
Sbjct: 557 DKPCTVMMSATGLIARATPEALSMFRSRSVSGER-ATDDQIVSIFRTTTRATYALITSAG 615

Query: 704 QCVRFPISAIRVFAGRN----SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           + V   ++ + V    N    S GV+       D++I                       
Sbjct: 616 RLVLAQVADLPVVPATNTLSLSSGVKA------DELIGQTESTDPIRGEHVVTAIAMEPV 669

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TS 813
           +++        + T  +    +                      +  G  KR      T+
Sbjct: 670 SKKHSDDATDSDTTEPQALPPLAIG-------------------TRAGVVKRWNREAPTT 710

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +         +         +   +V      D D+++ +S   +L+      +R  
Sbjct: 711 MDSWS--------VIDLK-----DGDEIVFAAIARDEDRLVFISTDSSLLTFEAKNVRPQ 757

Query: 874 SRATKGVVIFSTAKDERVVSVERIRES 900
            R   G+     A+  +V +   +   
Sbjct: 758 GRTAGGMAGIKLAEGCKVAAFNVVAAD 784


>gi|21282971|ref|NP_646059.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|38604913|sp|Q8NWU8|PARC_STAAW RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|21204410|dbj|BAB95107.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MW2]
          Length = 800

 Score =  632 bits (1630), Expect = e-179,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKCDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|262052165|ref|ZP_06024372.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
 gi|259159909|gb|EEW44946.1| DNA topoisomerase IV subunit A [Staphylococcus aureus 930918-3]
          Length = 800

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 275/887 (31%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund
           17B]
 gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B]
          Length = 969

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 290/937 (30%), Positives = 464/937 (49%), Gaps = 85/937 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ 
Sbjct: 9   PRDNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RY
Sbjct: 69  YYKSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNI
Sbjct: 129 TEARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV +G +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  
Sbjct: 189 PPHNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILIGKNSLRSAYESGVGKVAY 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  ++IEK    R  I +TE PY+ NKA +L+ I+E+  +++       I+D+RDESDR 
Sbjct: 249 RAKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRN 308

Query: 307 GYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIELK      SA+ IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V 
Sbjct: 309 GIRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKDMIRHYVN 368

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E+V RR++  L  A+ R H++ G   A+  LDEV+  IR S + + A   L+++   
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEK--- 425

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +  Q +AILEL L RLTGL       E   L   
Sbjct: 426 -----------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKI 462

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVT 541
           IK    ILS+   LL +IK EL  + D+    R+T I   +    ++ E+ I+ E++++T
Sbjct: 463 IKRLEKILSNEKELLKVIKFELKEISDKYGDERKTHIIEDDTKSKIDVEELIIVEEVMIT 522

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++KR+P+  Y            +  R+ D +  L   +T  S+L F++ GF+Y+ 
Sbjct: 523 LSKEGFIKRIPVKNYIRSNS---NPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQV 579

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +P    + +G+ L  I+     E    +     D  + N ++  F TK G ++ + 
Sbjct: 580 KGINIPELKWKEKGERLDTIIKSLNLEEEKIVEVISVDSFNPNKIF-RFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F         A+KL  +D +L+V+        + + + TKL       +  +     
Sbjct: 639 LDKFETSYGK-LQALKLRDKDALLNVKLRDREENNDYLNIKTKLELEFTIEVPELENVP- 696

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH--------------------- 757
           RN + ++  +L+  D+++ +      +          K+                     
Sbjct: 697 RNILPIQLFNLSIDDEIVEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSK 756

Query: 758 --------------MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                              + I     ++     D   +  I           +  + + 
Sbjct: 757 TLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGDLEKKEKIIRISSISSYDDDLALYSF 816

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTL 862
           S+KG  K+T   +F +     +      +   +    +++V   N     +++++ KG  
Sbjct: 817 SKKGLVKKTLLNEFSV---DTQKQFFYKLKTED--DEVISVDINNITLGNLVIITKKGMA 871

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           IR PV  +    +   GV   S  +++ V+    + +
Sbjct: 872 IRFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSK 908



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 7/222 (3%)

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           ++  ++L FS+ G++YK   + L           +   +     E+   I+      S  
Sbjct: 753 NSSKTLLLFSNKGYIYKIPGFLL----KNIMNGDIKLEVFTGDLEKKEKIIRISSISSYD 808

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKL 702
           ++L +   +K G V++  L++F    +           DE++SV+       ++++ TK 
Sbjct: 809 DDLALYSFSKKGLVKKTLLNEFSVDTQKQFFYKLKTEDDEVISVDINNITLGNLVIITKK 868

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQ 761
           G  +RFP+  +    G+ + GV GISL + D+VI    +  + + + +  I   +     
Sbjct: 869 GMAIRFPVENVNSM-GKVASGVTGISLREEDEVIFGAYVSKYLEVNGNTVIISPRSQEIS 927

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
               + D   IT                   +  + + ++ V
Sbjct: 928 LTSKANDKVNITVEDIKLQNRAGRGTNVMLMIDDELKDVMIV 969


>gi|82750948|ref|YP_416689.1| DNA topoisomerase IV subunit A [Staphylococcus aureus RF122]
 gi|82656479|emb|CAI80901.1| topoisomerase IV subunit A [Staphylococcus aureus RF122]
          Length = 800

 Score =  632 bits (1629), Expect = e-179,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A    H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D ++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDNLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDNLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|314933533|ref|ZP_07840898.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
 gi|313653683|gb|EFS17440.1| DNA topoisomerase IV, A subunit [Staphylococcus caprae C87]
          Length = 800

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/884 (31%), Positives = 462/884 (52%), Gaps = 92/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQGIDGIKKAYESGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      + +E   L   IKE  +IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEDEHAELEALIKELRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++VSH GY+KR   
Sbjct: 459 ALLSVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E++   +    ++   NN + V ATK+G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIDEDEQV---VDVYNEKDFNNNAFYVMATKNGMIKKSSVPQFKTTRFNKP 630

Query: 674 IA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  MK+   DEI++V     +  + + T  G  + +    +    G  + G++ I+L   
Sbjct: 631 LVGMKVKDHDEIVNVIRLESDQLVTVLTHKGMSLTYSTDEL-SDTGLRAAGIKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DHVVMTESVSDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL ++++G  KR S    +++ R+ +GI      K N    +V    V +  Q
Sbjct: 704 -------ILMITQRGAIKRISYKVLQVAKRAQRGITLLKELKKNPH-RIVDAAVVKEGQQ 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +          +NE+ ++ + T G  I       +VVS+  
Sbjct: 756 TYTIFSNSNEESGNINEVHLSEQYTNGSFIIDVEDFGQVVSMTL 799



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 112/274 (40%), Gaps = 19/274 (6%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  + HG ++R     F   N SG   + L   D +L  +    +
Sbjct: 490 IKIDKEVMVPSEEVILSVSHHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKYQEVNTQ 546

Query: 694 NDILLTTKLGQCVRFPI---SAIR--VFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
           + +L+ T  G+ +  P+   + IR        S  V    + + +QV+   +    D + 
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIV---PIDEDEQVV--DVYNEKDFNN 601

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKG 807
           +            ++      +     K    ++    +E    ++L+   ++TV + KG
Sbjct: 602 NAFYVMATKNGMIKKSSVPQFKTTRFNKPLVGMKVKDHDEIVNVIRLESDQLVTVLTHKG 661

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
                S+ +   +     GI++ ++        +V    V+D+D I++++ +G + R+  
Sbjct: 662 MSLTYSTDELSDTGLRAAGIKSINLKD---EDHVVMTESVSDSDSILMITQRGAIKRISY 718

Query: 868 NEIRIASRATKGVVIFS-TAKD-ERVVSVERIRE 899
             +++A RA +G+ +     K+  R+V    ++E
Sbjct: 719 KVLQVAKRAQRGITLLKELKKNPHRIVDAAVVKE 752



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 83/225 (36%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  +  G   R   ++ R F   N+ GV  I L  GD+++    V
Sbjct: 493 DKEVMVP---SEEVILSVSHHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLKYQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  + +   ++      
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVDVYNEKDFNNNA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K++S   F+ + R  K +    V        +V V  +  +  + +++ 
Sbjct: 604 FYVMATKNGMIKKSSVPQFKTT-RFNKPLVGMKVKD---HDEIVNVIRLESDQLVTVLTH 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        G+   +   ++ VV  E + +S+ +
Sbjct: 660 KGMSLTYSTDELSDTGLRAAGIKSINLKDEDHVVMTESVSDSDSI 704


>gi|289706923|ref|ZP_06503260.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
 gi|289556358|gb|EFD49712.1| DNA gyrase/topoisomerase IV, A subunit [Micrococcus luteus SK58]
          Length = 868

 Score =  632 bits (1629), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/859 (32%), Positives = 414/859 (48%), Gaps = 90/859 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                   E++ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +M
Sbjct: 14  DAPRPLPLEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILYMMSRM 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK AR+ GEVMGK HPHG+AAIYDA+ R+AQ +SLRL +++G GNFGS+D D
Sbjct: 74  GLRPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-D 132

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+  AA  L  DL + TVDF PNYD   Q+P VL A YPN+LVNG  GIA
Sbjct: 133 GPAAPRYTEARMAPAALALTADLDEGTVDFIPNYDNQLQQPAVLPAAYPNLLVNGTTGIA 192

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV G   ++ +P  DL+A+M  I GPD P+G  I+G  G+++AYAT
Sbjct: 193 VGMATNMAPHNLREVVAGARHLLADPAADLEAIMAHIPGPDLPSGGRIVGLDGVRDAYAT 252

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG+  +R    +E+ +  R  +VVTE+PY V    ++E+I   V  K++  IAD+ D +
Sbjct: 253 GRGTFRMRAAVAVEQVTARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLT 312

Query: 304 DR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR  G R+ IELK G +   +L  LYR+T L+  F +N VAL   +P+   L+ +L+ +V
Sbjct: 313 DRKNGLRLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYV 372

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +VV RRT + L K RDR H++ GL +A+ ++DEV+ IIR S +   AR  LM    
Sbjct: 373 DHRLDVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM---- 428

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                 G   L++VQ   ILELRL +LT   R ++  E + L  
Sbjct: 429 ----------------------GVFDLTQVQADHILELRLRQLTKFSRIELEAERDELQA 466

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED----------- 531
            I E   IL+S +RL  ++  EL +V DE    RRT ++E                    
Sbjct: 467 AIAELEAILASDARLREVVSSELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAG 526

Query: 532 --------CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
                    +        +S  G + R       A +           R  D    +   
Sbjct: 527 AGQAGADLMVPDTACWALLSTSGRLLRTADRTPIAPQG--------RRRKHDAFASVVPT 578

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +    +   +S G +++ +   LP+    +   A+   L   +   +             
Sbjct: 579 TARGEIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL- 637

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKL 702
            +  +   T HG V+R +    +        A+ L   D ++       E + ++  T+ 
Sbjct: 638 -DTVMALGTAHGVVKRVRPEWPLNRQVVD--AVALKDGDAVVGAAPAPDEADQLVFLTRT 694

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R+  SA+R   G    GV GI LA GD V++  +   A               A  
Sbjct: 695 GQLLRYAASAVRP-QGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVV 753

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
             ++    ++                               S  G  K T   ++    R
Sbjct: 754 VTVTDGEADVLG-----------------------------SAPGSVKVTPLGEYPAKGR 784

Query: 823 SGKGIRATDVSKINEIGAL 841
              G+RA  + K      L
Sbjct: 785 GTGGVRAHRLLKGESGLEL 803



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+ +R          GR           K D   S+                  H
Sbjct: 544 LLSTSGRLLRTADRTPIAPQGRR---------RKHDAFASVVPTTARGEIGALTSAGALH 594

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV----SEKGFGKRTS 813
                 L              +     +      E  +    + TV    +  G  KR  
Sbjct: 595 RLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPLDTVMALGTAHGVVKRVR 654

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRI 872
             ++ + NR     +  D   + +  A+V   P  D  DQ++ ++  G L+R   + +R 
Sbjct: 655 P-EWPL-NR-----QVVDAVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRP 707

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              A  GV     A  + V++      + + +
Sbjct: 708 QGPAGGGVAGIRLAAGDTVLAFGVAPAASLTE 739



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 82/283 (28%), Gaps = 47/283 (16%)

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           D    +       +  G + R      I               D   SV   T   +I  
Sbjct: 533 DLMVPDTACWALLSTSGRLLRTADRTPIAPQGRR------RKHDAFASVVPTTARGEIGA 586

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGIS----------LAKGDQVISMAIVLHADADY 748
            T  G   R     + V    ++     ++          LAKG+ ++++  +       
Sbjct: 587 LTSAGALHRLQAVDLPVAGEPSAAP--AMTAALPAAELVPLAKGETLVALVPL------- 637

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           D  +         +R+          +   +  +G+            +Q +  ++  G 
Sbjct: 638 DTVMALGTAHGVVKRVRPEWPLNRQVVDAVALKDGDAVVGAAPAPDEADQLV-FLTRTGQ 696

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKIN--------------EIGALVAVFP-------V 847
             R ++   R    +G G+    ++  +              E GA  A  P       V
Sbjct: 697 LLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            D +  +L S  G++   P+ E     R T GV      K E 
Sbjct: 757 TDGEADVLGSAPGSVKVTPLGEYPAKGRGTGGVRAHRLLKGES 799


>gi|298694655|gb|ADI97877.1| Topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 800

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/890 (30%), Positives = 455/890 (51%), Gaps = 102/890 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           Q  L S      G +     N+I  + + T G  I  T     V+ +  I
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDMYII 800



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|15926935|ref|NP_374468.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|258434733|ref|ZP_05688807.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|258444691|ref|ZP_05693020.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282892846|ref|ZP_06301081.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
 gi|296275474|ref|ZP_06857981.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|20178001|sp|Q93KF4|PARC_STAAN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13701152|dbj|BAB42447.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           N315]
 gi|257849094|gb|EEV73076.1| topoisomerase IV subunit A [Staphylococcus aureus A9299]
 gi|257850184|gb|EEV74137.1| topoisomerase IV subunit A [Staphylococcus aureus A8115]
 gi|282764843|gb|EFC04968.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A8117]
          Length = 800

 Score =  631 bits (1628), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|294815537|ref|ZP_06774180.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|294328136|gb|EFG09779.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 788

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/845 (33%), Positives = 418/845 (49%), Gaps = 95/845 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              +   + E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +M
Sbjct: 21  STKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEM 80

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   
Sbjct: 81  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGND 140

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GI
Sbjct: 141 DPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGI 200

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY 
Sbjct: 201 AVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYE 260

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 261 TGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDL 320

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 321 TDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 380

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R 
Sbjct: 381 LDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER- 439

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 440 -------------------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLM 474

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI     IL S + L  ++  EL SV  +  T RRT ++E          +    +   
Sbjct: 475 DEIAALTRILESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPCR 534

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R        +    + R  +V+            +    +   +S G + 
Sbjct: 535 VLLSSTGLLARTVTGDPLPEPGPKRARHDLVVSS-------VTATARGDIGAVTSAGRLL 587

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP     A          L   LSL   E +  +    E     ++  +   T 
Sbjct: 588 RVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDE-----SSQGLALGTL 642

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +       L   D I+   E  T E D++  T   Q +R+P + 
Sbjct: 643 QGVVKRVVPDYPAN--KDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQ 700

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ G+ LA G +V+S   V  A                            
Sbjct: 701 VRP-QGRAAGGMAGVKLADGARVLSFTAVDPAAEAVVFTAAGST---------------- 743

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   +  + TV      K T    +    R+  G+R    
Sbjct: 744 ---------------------GALDDSVTTV------KLTPFDQYPRKGRATGGVRCQRF 776

Query: 833 SKINE 837
            K  +
Sbjct: 777 LKGED 781



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 22/199 (11%)

Query: 717 AGRNSVGVRGISLAK-------GDQVIS-------MAIVLHADADYDERICYMKHMSAQR 762
            G  +  V G  L +        D V+S         I     A    R+  +      +
Sbjct: 540 TGLLARTVTGDPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQ 599

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
              +        L    S+E + +      L    Q +   + +G  KR    D+  +  
Sbjct: 600 TATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPANK- 657

Query: 823 SGKGIRATDVSKINEIGALVA-VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
                   +V  + E   +V         + ++ ++    L+R P  ++R   RA  G+ 
Sbjct: 658 -----DELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMA 712

Query: 882 IFSTAKDERVVSVERIRES 900
               A   RV+S   +  +
Sbjct: 713 GVKLADGARVLSFTAVDPA 731



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 26/220 (11%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGV--------RGISLAKGDQVISMAIVLHADA 746
           DI   T  G+ +R  +  +       +             +SL   + VI +  +  +  
Sbjct: 576 DIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDES-- 633

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
               +   +  +    + +  D           S++         EL+  E+ ++ ++  
Sbjct: 634 ---SQGLALGTLQGVVKRVVPDYPANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSD 690

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG------ 860
               R  +   R   R+  G+    ++       +++   V+   + ++ +  G      
Sbjct: 691 AQLLRYPAAQVRPQGRAAGGMAGVKLADG---ARVLSFTAVDPAAEAVVFTAAGSTGALD 747

Query: 861 ----TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               T+   P ++     RAT GV      K E V+ +  
Sbjct: 748 DSVTTVKLTPFDQYPRKGRATGGVRCQRFLKGEDVLLLAW 787


>gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 278/882 (31%), Positives = 453/882 (51%), Gaps = 105/882 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR +        + ++ E  +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A       +  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNASG-----KEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 674 I-AMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + AMK+   D ++SV     +     I L T  G  + +P+S + +  G  + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSEL-LDTGLRATGIKAINL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+                                                     
Sbjct: 690 KDEDHVV----------------------------------------------------- 696

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    E  IL  +++G  KR S    + + R+ +GI      K      +VA      
Sbjct: 697 LADHIQTEDTILIATQRGALKRISFKVLQQAKRAQRGITLLKELKKQPH-RVVAARVCRP 755

Query: 850 ND-QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTA 886
              Q  LVS +    G +      +I ++ + T G  +  T+
Sbjct: 756 EQSQYRLVSQQDETTGLI-----KDIHLSEQYTNGSFVVDTS 792



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 85/212 (40%), Gaps = 16/212 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD---YDERICY 754
             T+ G   R   +++R F   N+ G   I L + D V+ +      D      ++    
Sbjct: 506 SLTQEGYIKR---TSLRSF---NASGKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYL 559

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +     +   D  +  S       +  + +         E+ I+T + +G  K++  
Sbjct: 560 LIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITATRQGMIKKSLL 619

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQII-LVSDKGTLIRVPVNEIR 871
             F+ + R+ K + A  V +     AL++V  V  +   Q+I L++ +G  +  P++E+ 
Sbjct: 620 SGFKST-RTTKPLVAMKVKE---SDALISVMLVPADASSQLITLLTHRGMSLTYPMSELL 675

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                  G+   +   ++ VV  + I+  + +
Sbjct: 676 DTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707



 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  +   + +   E  +L+++++G+ KRTS   F  S +   G++        E  
Sbjct: 484 EEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK--------ERD 535

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVER 896
            ++ +   N  D  ++ ++KG  + +PV+++        G     I    +DERVV    
Sbjct: 536 GVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYT 595

Query: 897 IRESEIV 903
           + E    
Sbjct: 596 VSEFNDE 602


>gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 828

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 271/846 (32%), Positives = 416/846 (49%), Gaps = 86/846 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M        E+  + I  + +++EM+ S+L YA +VI  RA+PD RDG+KPV RRIL+ M
Sbjct: 1   MARTTSRPPEDLAEKIIDIDVSEEMRGSFLEYAYSVIYQRALPDARDGMKPVQRRILYQM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VKCAR+ G+VMG+ HPHG+ AIYDAL R++Q +++R+ L++G GNFGS+
Sbjct: 61  NEMGLRHDRGHVKCARVVGDVMGRLHPHGDTAIYDALVRLSQPFAMRVPLVDGHGNFGSL 120

Query: 121 DGDP-PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            GD  PAA RYTE RL +AA  L+  + ++ VDFRPNYDG   EP VL A +PN+LVNG 
Sbjct: 121 GGDDAPAAMRYTEARLDRAAEQLVASIDENVVDFRPNYDGQETEPEVLPAAFPNLLVNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNLGEVV     +I +P+  L+ L E + GPD PTG  I+G  GI++
Sbjct: 181 SGIAVGMATNMAPHNLGEVVAAARHLIAHPEATLEELTEFVPGPDLPTGGTIVGLDGIRD 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRG+   R    IEK S  R  +VVTE+PY V    ++ +I ELV+ K++  I+DL
Sbjct: 241 AYRSGRGTFKTRATVSIEKVSARRTGLVVTELPYSVGPEKVISRIKELVQSKKLQGISDL 300

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           +D +DR QG R+VIELK G + + +L +LYR T ++  F +N VAL   +P+   L  +L
Sbjct: 301 KDLTDRTQGLRLVIELKNGFNPEAVLEELYRLTPMEESFGINNVALVDGQPQTLGLRELL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R +VV RR+++   K ++R H++ GL +A+ ++D V+ +IR + +   AR  LM
Sbjct: 361 EVYVNHRLDVVRRRSEFRRAKRQERLHLVDGLLVALLDIDRVISLIREAEDTAAARESLM 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                     G   LSE+Q R ILE  L RLT   R ++  E +
Sbjct: 421 --------------------------GAYDLSEIQARYILETPLRRLTRFDRMELETERD 454

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC---IVR 535
            L  E+     +L S  +L  ++ +E+  V  E  TPRRT++ E             +  
Sbjct: 455 KLNKEVDALTAVLESDKKLRRLVSKEMGDVAKEFATPRRTQLRESDGVARSAVIPLEMAD 514

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           +   V +   G + R           G + R   V             ++ ++V   + L
Sbjct: 515 QPCHVLMGVHGAIGRSKGPSVPRVYEGLRTRHDAVHVS-------VPTTSRSAVGLVTDL 567

Query: 596 GFVYKEKVWRLPIGSPQARG-KALINILSLNQGERIT-TIMPFPEDESSWNNLYVVFATK 653
           G + +  V  LP    +      L + L +++  ++              +       T+
Sbjct: 568 GRMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVVSMDASGPGFALGTR 627

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISA 712
            G V+R         +    +A  L   D ++ V +  T E D+   T   Q +RF  SA
Sbjct: 628 GGVVKRVSPDYPPNKDDFEVVA--LKDDDRVVGVTQLSTGEEDLAFITSEAQLLRFSASA 685

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GV G+ L++G +V+    V          +                    
Sbjct: 686 VRP-QGRPAGGVAGVRLSEGARVLWFGAVPSPQDSVVVTVSGSSGA-------------- 730

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                       L  ++ G  K T    + +  R+  G+R    
Sbjct: 731 ----------------------------LEGTQAGSAKVTPFEAYPVKGRATGGVRCHRY 762

Query: 833 SKINEI 838
            K  + 
Sbjct: 763 LKGEDT 768



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 8/167 (4%)

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           S   ++                       S        +     ++G+        +   
Sbjct: 559 SAVGLVTDLGRMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVVSMDAS 618

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIIL 855
                  +  G  KR S  D+  +          +V  + +   +V V  +    + +  
Sbjct: 619 GPGFALGTRGGVVKRVSP-DYPPNK------DDFEVVALKDDDRVVGVTQLSTGEEDLAF 671

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           ++ +  L+R   + +R   R   GV     ++  RV+    +   + 
Sbjct: 672 ITSEAQLLRFSASAVRPQGRPAGGVAGVRLSEGARVLWFGAVPSPQD 718



 Score = 38.6 bits (88), Expect = 5.4,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 68/220 (30%), Gaps = 35/220 (15%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRN------SVGV---RGISLAKGDQVISMAIVLHADA 746
           + L T LG+ +R P+  +             + G+     + L   ++V+S+        
Sbjct: 561 VGLVTDLGRMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVV-----SM 615

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D       +       + +S D           +++ +       +L   E+ +  ++ +
Sbjct: 616 DASGPGFALGTRGGVVKRVSPDYPPNKDDFEVVALKDDDRVVGVTQLSTGEEDLAFITSE 675

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEI---GAL-----------VAVFPVNDNDQ 852
               R S+   R   R   G+    +S+   +   GA+                  +   
Sbjct: 676 AQLLRFSASAVRPQGRPAGGVAGVRLSEGARVLWFGAVPSPQDSVVVTVSGSSGALEG-- 733

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERV 891
               +  G+    P     +  RAT GV        ++ +
Sbjct: 734 ----TQAGSAKVTPFEAYPVKGRATGGVRCHRYLKGEDTL 769


>gi|57650359|ref|YP_186243.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195080|ref|YP_499880.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221480|ref|YP_001332302.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|161509520|ref|YP_001575179.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253733398|ref|ZP_04867563.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|258451753|ref|ZP_05699777.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|262049828|ref|ZP_06022691.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300912075|ref|ZP_07129518.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|81694551|sp|Q5HG64|PARC_STAAC RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|114152111|sp|Q2FYS4|PARC_STAA8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777321|dbj|BAA11087.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
 gi|57284545|gb|AAW36639.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87202638|gb|ABD30448.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374280|dbj|BAF67540.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368329|gb|ABX29300.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253728666|gb|EES97395.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257860584|gb|EEV83408.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A5948]
 gi|259162052|gb|EEW46631.1| DNA topoisomerase IV subunit A [Staphylococcus aureus D30]
 gi|300886321|gb|EFK81523.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|315196387|gb|EFU26739.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140313|gb|EFW32171.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143914|gb|EFW35686.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329730889|gb|EGG67265.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733685|gb|EGG70013.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 800

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|326443887|ref|ZP_08218621.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 815

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/845 (33%), Positives = 418/845 (49%), Gaps = 95/845 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              +   + E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +M
Sbjct: 5   STKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEM 64

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   
Sbjct: 65  GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGND 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GI
Sbjct: 125 DPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY 
Sbjct: 185 AVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYE 244

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 245 TGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDL 304

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 305 TDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 364

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R 
Sbjct: 365 LDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER- 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 424 -------------------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLM 458

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI     IL S + L  ++  EL SV  +  T RRT ++E          +    +   
Sbjct: 459 DEIAALTRILESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPCR 518

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R        +    + R  +V+            +    +   +S G + 
Sbjct: 519 VLLSSTGLLARTVTGDPLPEPGPKRARHDLVVSS-------VTATARGDIGAVTSAGRLL 571

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP     A          L   LSL   E +  +    E     ++  +   T 
Sbjct: 572 RVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDE-----SSQGLALGTL 626

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +       L   D I+   E  T E D++  T   Q +R+P + 
Sbjct: 627 QGVVKRVVPDYPAN--KDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQ 684

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ G+ LA G +V+S   V  A                            
Sbjct: 685 VRP-QGRAAGGMAGVKLADGARVLSFTAVDPAAEAVVFTAAGST---------------- 727

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                   +  + TV      K T    +    R+  G+R    
Sbjct: 728 ---------------------GALDDSVTTV------KLTPFDQYPRKGRATGGVRCQRF 760

Query: 833 SKINE 837
            K  +
Sbjct: 761 LKGED 765



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 22/199 (11%)

Query: 717 AGRNSVGVRGISLAK-------GDQVIS-------MAIVLHADADYDERICYMKHMSAQR 762
            G  +  V G  L +        D V+S         I     A    R+  +      +
Sbjct: 524 TGLLARTVTGDPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQ 583

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
              +        L    S+E + +      L    Q +   + +G  KR    D+  +  
Sbjct: 584 TATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPANK- 641

Query: 823 SGKGIRATDVSKINEIGALVA-VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
                   +V  + E   +V         + ++ ++    L+R P  ++R   RA  G+ 
Sbjct: 642 -----DELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMA 696

Query: 882 IFSTAKDERVVSVERIRES 900
               A   RV+S   +  +
Sbjct: 697 GVKLADGARVLSFTAVDPA 715



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 26/220 (11%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGV--------RGISLAKGDQVISMAIVLHADA 746
           DI   T  G+ +R  +  +       +             +SL   + VI +  +  +  
Sbjct: 560 DIGAVTSAGRLLRVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDES-- 617

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
               +   +  +    + +  D           S++         EL+  E+ ++ ++  
Sbjct: 618 ---SQGLALGTLQGVVKRVVPDYPANKDELEVFSLKEGDRIVGGAELRTGEEDLVFITSD 674

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG------ 860
               R  +   R   R+  G+    ++       +++   V+   + ++ +  G      
Sbjct: 675 AQLLRYPAAQVRPQGRAAGGMAGVKLADG---ARVLSFTAVDPAAEAVVFTAAGSTGALD 731

Query: 861 ----TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               T+   P ++     RAT GV      K E V+ +  
Sbjct: 732 DSVTTVKLTPFDQYPRKGRATGGVRCQRFLKGEDVLLLAW 771


>gi|306825060|ref|ZP_07458402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432496|gb|EFM35470.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 826

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/885 (32%), Positives = 456/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL  + K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQYIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIQKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVSILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 HFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +      I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKTAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  + +  T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQVAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLVSRNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D++ +  I   +      +   +K +S      +   +    +  +   + +   
Sbjct: 687 NLKAEDELQAAFICNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +   V
Sbjct: 747 LAGA-----------VAEQGFV-----------------------------GDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 69/224 (30%), Gaps = 28/224 (12%)

Query: 683 EILSVETCTQENDILLTTKLGQCVR-----FPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           EI +     +E+  +  TK G   R     F  S +     R             D++I 
Sbjct: 490 EIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR-----------DDDRLIF 538

Query: 738 MAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           + +               + Y               E ++    +      I      + 
Sbjct: 539 VQVAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLDQ 598

Query: 794 KLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     +  G  KR    +F   R      K ++   +   +E   +VAV P+  +
Sbjct: 599 FDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETDQIVAVAPIKLD 654

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           D ++LVS  G  +R  + E+ +      GV   +   ++ + + 
Sbjct: 655 D-VLLVSRNGYALRFNIEEVPVVGAKAAGVKAMNLKAEDELQAA 697


>gi|282916616|ref|ZP_06324374.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770422|ref|ZP_06343314.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|282319103|gb|EFB49455.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460569|gb|EFC07659.1| DNA topoisomerase 4 subunit A [Staphylococcus aureus subsp. aureus
           H19]
 gi|302332971|gb|ADL23164.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 800

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|297207991|ref|ZP_06924422.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|296887234|gb|EFH26136.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC 51811]
          Length = 800

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEIILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEIILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL078PA1]
          Length = 844

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/842 (32%), Positives = 408/842 (48%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIINDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPSDGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L + DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 44.4 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   +E          L      +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  +     +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202]
 gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202]
 gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK187]
 gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           J165]
 gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           SK137]
 gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA1]
 gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL074PA1]
 gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA2]
 gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA1]
 gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA1]
 gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA1]
 gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA2]
 gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA1]
 gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA2]
 gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA1]
 gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL063PA2]
 gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL007PA1]
 gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL056PA1]
 gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL086PA1]
 gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA4]
 gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA1]
 gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL050PA3]
 gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL036PA3]
 gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL067PA1]
 gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA1]
 gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA1]
 gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA2]
 gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA1]
 gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA1]
 gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL045PA1]
 gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA2]
 gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA1]
 gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL027PA2]
 gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL002PA3]
 gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL072PA1]
 gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL038PA1]
 gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL059PA2]
 gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL046PA1]
 gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA1]
 gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL030PA2]
 gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2]
 gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3]
 gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL013PA2]
 gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA2]
 gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL043PA1]
 gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA3]
 gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL083PA2]
 gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL020PA1]
 gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL087PA1]
 gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL025PA2]
 gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1]
          Length = 844

 Score =  631 bits (1627), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/842 (32%), Positives = 408/842 (48%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPSDGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L + DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 44.4 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   +E          L      +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  +     +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 826

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/884 (31%), Positives = 451/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D      ++             +    + +R+   +    +  K    V   +  +
Sbjct: 691 LKEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILSTSRAKRGLQVLRELKNK 744

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +           V+E+GF       DF                             V+
Sbjct: 745 PHRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|323441139|gb|EGA98846.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O11]
 gi|323444007|gb|EGB01618.1| DNA topoisomerase IV subunit A [Staphylococcus aureus O46]
          Length = 800

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 454/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEDVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEDVSENDTI 704


>gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 454/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|325687507|gb|EGD29528.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis
           SK72]
          Length = 816

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/887 (31%), Positives = 448/887 (50%), Gaps = 81/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLQDIEKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPDFPTGA++ GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVIYMIDHPSAKVDKLMEFLPGPDFPTGAIVQGRDEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ ++ILN L++YT LQ  ++ NMVA++ + P    ++ IL +++A R+E+++ R+
Sbjct: 302 LKKDANTELILNYLFKYTDLQVNYNFNMVAIDNFTPRLVGIVPILTSYIAHRKEIILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E   L  +I     I+  
Sbjct: 406 ----------KISYDFTEEQAEAIVTLQLYRLTNTDVVVLEEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKRELRDVKKKFGNPRLSELQDTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    V  L     
Sbjct: 516 SPRSFSAS-----TLEEMGKRDDDRLIFVSPAKTIQHLLIFTSLGNVIYRPVHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +S          + + E   S+       ATK G ++R +  +F      
Sbjct: 571 KEIGEHLSQTIS---NFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +      + +D++L TK G  +RF I  +    G  + GV+ I+
Sbjct: 628 KSKSLKFAKLKNEDDQVIALAPIKLDDVMLVTKNGYALRFNIEEV-PVIGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L K D + +  I          +   +K M+     ++        +  +   + +    
Sbjct: 687 LKKDDVLAAAFIANTDSLYLLTQRGSLKRMAVADIPVTSRANRGLQVLRELKTKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                     F L  +E                                           
Sbjct: 747 AGPVFGEAVDFDLFTTE----------------------------------------AEA 766

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              QI+ ++S+KGT   + + ++ ++ R + G  I     DE V S 
Sbjct: 767 SEKQILQVLSNKGTAYEINLADLSLSERTSNGSFISDAISDEEVFSA 813



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 85/265 (32%), Gaps = 35/265 (13%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S        +  EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNLMKRELRDVKKKFGNPRLSELQ--DTANAIEIDTASLIVEEETYVSVTRSGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLHADADYDERICYMKHMSA 760
               F  S +     R             D++I ++    + H            + +  
Sbjct: 516 SPRSFSASTLEEMGKR-----------DDDRLIFVSPAKTIQHLLIFTSLGNVIYRPVHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF--- 817
              +   +  E  S    +                +E      ++ G  KR    +F   
Sbjct: 565 LSDIRWKEIGEHLSQTISNFDTKEEVIYTELLDSFEEGTYFAATKLGQIKRVERKEFSPW 624

Query: 818 RISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           R         ++   +K  NE   ++A+ P+  +D ++LV+  G  +R  + E+ +    
Sbjct: 625 RTYK-----SKSLKFAKLKNEDDQVIALAPIKLDD-VMLVTKNGYALRFNIEEVPVIGAK 678

Query: 877 TKGVVIFSTAKDERVVSVERIRESE 901
             GV   +  KD+ V++   I  ++
Sbjct: 679 AAGVKAINLKKDD-VLAAAFIANTD 702


>gi|306831249|ref|ZP_07464409.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426485|gb|EFM29597.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 819

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 269/799 (33%), Positives = 421/799 (52%), Gaps = 43/799 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+ ++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKAIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNAS-----TVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   + +     ATK G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFATDEYVLYAEIVDD---FGSQTYFAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +   +    +D+++ T  G  + F I  +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN---I 785
           L   D V S  +          +   +K M+ +    +        +  +   + +   +
Sbjct: 687 LKDDDFVASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLRELKSKPHRVFM 746

Query: 786 SEERCQELKLKEQFILTVS 804
           +        ++   + T+S
Sbjct: 747 AGPVHASNDVQNLDLFTIS 765



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/470 (12%), Positives = 129/470 (27%), Gaps = 30/470 (6%)

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNEL 477
             +   ++  I+L  D+      +  +  +++Q      ++ +       +G   +    
Sbjct: 290 ESDRDGLRIAIELKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSY 349

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            +    I               +   E L     +       I          D      
Sbjct: 350 IAHRKAIIVARSKFDKEKAEKRLHIVEGLIRVISILDD---VIALIRASENKADAKENLK 406

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +    S       V L +YR                 + +T L                 
Sbjct: 407 VSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITML--------KAIIGDERT 458

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +           L + +     +              V  TK G +
Sbjct: 459 MYNVMKRELREVKKKFATP------RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYI 512

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     +          +     DE++ V        +L+ T LG  +  PI  +    
Sbjct: 513 KRTSPRSYNASTVEE---IGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIR 569

Query: 718 GRNSVGV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            ++      + I + A  + V+   IV    +        +  +    R          S
Sbjct: 570 WKDIGEHLSQTITNFATDEYVLYAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKS 629

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +   N  +       +    ++ V+  G+    +  +  +      G++A ++  
Sbjct: 630 KSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINL-- 687

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +    VA   V + D   +++ +G+L R+    I   SRA +G+ +  
Sbjct: 688 --KDDDFVASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLR 735



 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 22/252 (8%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           T +  ++R        F     +   A       EI       +E+  +  TK G   R 
Sbjct: 458 TMYNVMKRELREVKKKFATPRLTELQAEA--ETIEIDVASLIVEEDTFVSVTKGGYIKR- 514

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLI 765
             ++ R +   N+  V  I     D++I +A      H     +      + +     + 
Sbjct: 515 --TSPRSY---NASTVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIR 569

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNR 822
             D  E  S    +                  Q     ++ G  KR    +F   R    
Sbjct: 570 WKDIGEHLSQTITNFATDEYVLYAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYK- 628

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             K ++   +   N   ++V + P+  +D +++V+  G  +   + E+ +      GV  
Sbjct: 629 -SKSVKYAKL--KNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGAKAAGVKA 684

Query: 883 FSTAKDERVVSV 894
            +   D+ V S 
Sbjct: 685 INLKDDDFVASA 696


>gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA1]
 gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL110PA2]
 gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL082PA1]
 gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL053PA2]
 gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL092PA1]
          Length = 844

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/842 (32%), Positives = 408/842 (48%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT +      +        +  +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAATSAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPSDGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L + DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 44.4 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   +E          L      +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  +     +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA]
 gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031]
 gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA]
 gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031]
          Length = 826

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 691 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 751 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 969

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 293/937 (31%), Positives = 463/937 (49%), Gaps = 85/937 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             +  I  V + + M  +YL YAI V   RA+PD+RDGLKPVHRRIL+G   +    ++ 
Sbjct: 9   PRDNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRP 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GK+HPHG++++YDA+  +AQ++S R  LI+G GN+GS+DGD  AA RY
Sbjct: 69  YYKSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  +L D+ KDTVD  PNY  S  EP VL +RYPN+LVNG  GIAVG+ATNI
Sbjct: 129 TEARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV DG +A IDN +ID+  LME I+GPD PTG +++G+  +++AY +G G +  
Sbjct: 189 PPHNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILIGKNSLRSAYESGVGKVAY 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  ++IEK    R  I +TE PY+ NKA +L+ I+E+  ++R       I+D+RDESDR 
Sbjct: 249 RAKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRN 308

Query: 307 GYRVVIELK---RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIELK      SA+ IL  L++ T LQ   S NMVAL   KPE  +L  +++ +V 
Sbjct: 309 GIRAVIELKKSADEDSANKILKYLFKKTELQCNISFNMVALADGKPETMSLKNMIRHYVN 368

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E+V RR++  L  A+ R H++ G   A+  LDEV+  IR S + + A   L+++   
Sbjct: 369 HQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEK--- 425

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +  Q +AILEL L RLTGL       E   L   
Sbjct: 426 -----------------------FAFTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKI 462

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVT 541
           IK    ILS+   LL +IK EL  + D+    R+T I+E      ++ E+ I+ E++++T
Sbjct: 463 IKRLEKILSNEKELLKVIKFELKEISDKYGDERKTNIIEDDAKSKIDIEELIIVEEVMIT 522

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++KR+P+  Y            +  R+ D +  L   +T  S+L F+  GF+Y+ 
Sbjct: 523 LSKDGFIKRIPVKNYIRSNS---NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQV 579

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   +P    + +G+ L  I+  +       I+     ++   N    F TK G ++ + 
Sbjct: 580 KGINIPELKWKEKGERLDTIIK-SLNLEDEKIVEVISVDNFNPNKIFRFITKSGGIKESS 638

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F         A+KL  +D +L+V+        + + + TKL       +  +     
Sbjct: 639 LDKFETSYGK-LQALKLRDKDALLNVKLRDREENNDYLNIKTKLDLEFTIEVPELENVP- 696

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH--------------------- 757
           RN + ++  +L+  D++I +      +          K+                     
Sbjct: 697 RNILPIQLFNLSIDDEIIEVNESKEEEYFEFNIGINDKNILKYYKTSKVDINRTKINSSK 756

Query: 758 --------------MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                              + I     ++     +   +  I              + + 
Sbjct: 757 TLLLFSNKGYIYKIPGFLLKNIMNGDIKLEVFTGELEKKEKIIRISSISSYDDNLALYSF 816

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTL 862
           S+KG  K+T   +F++     +      +   +    +++V   N     +I+++ KG  
Sbjct: 817 SKKGLVKKTLLNEFKL---DTQKQFFYKLKTED--DEVISVDINNITLGNLIIITKKGMA 871

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           IR PV  +    +   GV   S  +++ V+    + +
Sbjct: 872 IRFPVENVNSMGKVASGVTGISLREEDEVIFGAYVSK 908



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 7/222 (3%)

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           ++  ++L FS+ G++YK   + L           +   +   + E+   I+      S  
Sbjct: 753 NSSKTLLLFSNKGYIYKIPGFLL----KNIMNGDIKLEVFTGELEKKEKIIRISSISSYD 808

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKL 702
           +NL +   +K G V++  L++F    +           DE++SV+       ++++ TK 
Sbjct: 809 DNLALYSFSKKGLVKKTLLNEFKLDTQKQFFYKLKTEDDEVISVDINNITLGNLIIITKK 868

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQ 761
           G  +RFP+  +    G+ + GV GISL + D+VI    +  + D + +  I   +     
Sbjct: 869 GMAIRFPVENVNSM-GKVASGVTGISLREEDEVIFGAYVSKYLDVNGNTVIISPRSQEIS 927

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
               + +   IT                   +  + + ++ V
Sbjct: 928 LISKANEKLNITVEDIKLQNRAGRGTNVILMIDDELKDVMIV 969


>gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 662

 Score =  631 bits (1626), Expect = e-178,   Method: Composition-based stats.
 Identities = 269/681 (39%), Positives = 420/681 (61%), Gaps = 31/681 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E ++ I +V I DE++ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+ M +MG+  +K 
Sbjct: 5   ENKEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKA 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K  RI G+V+GKYHPHG+ +IYDAL R+AQD+SLR  +I GQGNFGS+DGDPPAA RY
Sbjct: 65  FKKAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +++K   +++ D+ K+TV+F+ NYD S  EP ++ + +P +LVNG  GIAVGMATN+
Sbjct: 125 TEAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNM 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             HNL E+ D  V ++DN +  +  L++I++GPDFPT   I+    +  AY TG+GS+VI
Sbjct: 185 APHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIKAYKTGKGSVVI 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   HIE+ + DR  I+VTEIPY VNK+A+L K+A L +E+++  + D+RDESDR+G R+
Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+KRG    VI+N LY YT  +  FS+N +AL    P++  L  +L  F+  R+ ++ 
Sbjct: 305 VLEVKRGFDPHVIMNLLYEYTEFKKHFSINNLALVNGIPKQLNLEELLFEFIEHRKNIIE 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L KA+++AHVL GL IA+ N+DEV++II+ S   + A+  L+            
Sbjct: 365 RRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVS----------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE+Q  ++L++RL +LT L    +  ELN L   IK+  DI
Sbjct: 414 ---------------NFGLSEIQANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +  R++ II++E +++  +    RRT+I+           D + +E++VV ++  G++
Sbjct: 459 LLNPVRIINIIREETINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFL 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  + Y+ Q  GGKG S   + D D +     V+TH  +   S+ G +Y    + +  
Sbjct: 519 KRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 578

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  ++G+ +  +++L   E I   +     +   ++ Y++  T  G + R + +DF  +
Sbjct: 579 SSRASKGQNISELINLGDQEEI---LTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV 635

Query: 669 NRSGKIAMKLDSRDEILSVET 689
              G I +KL+ +D + S E 
Sbjct: 636 KSRGVIVIKLNDKDFVTSAEI 656



 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 7/126 (5%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           +  + +    +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +
Sbjct: 491 DEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEI 547

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           V    VN +D + ++S++G L  +   EI+ +SRA+KG     + +    E ++++ +  
Sbjct: 548 VIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTI-KNS 606

Query: 899 ESEIVD 904
           +    D
Sbjct: 607 KDLTDD 612



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 8/158 (5%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +    +   +EN +++ TK G   R   +  +   G    G+    L  GD+++    V 
Sbjct: 496 KTSMSDLMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVN 554

Query: 743 HADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
             D      +E   Y+ +    +        +  S   +   +  I   +  +    + +
Sbjct: 555 THDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAY 614

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKIN 836
           +L  +  G   R  S DF+ + +R   G+    ++  +
Sbjct: 615 LLLTTASGKIARFESTDFKAVKSR---GVIVIKLNDKD 649


>gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
 gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564]
          Length = 826

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/885 (32%), Positives = 455/885 (51%), Gaps = 83/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEVIYVEVVD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L + D + S  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKEDDVLQSAFICNTSSFYLLTQRGSLKRVSTEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +   V
Sbjct: 747 LAGA-----------VAEQGFV-----------------------------GDLFS-TEV 765

Query: 848 NDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +N Q +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 EENYQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 142/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             +      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEVIYVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSA 697


>gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y++ +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 145/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V++ +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius]
          Length = 803

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/887 (31%), Positives = 447/887 (50%), Gaps = 115/887 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GI+ AY TG+G +++R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGGIVQGIDGIRKAYETGKGKVIVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L+                 
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLVA---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E + L  +I     IL +  
Sbjct: 409 ----------TYDFTETQAEAIVMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +   PR +        + ++ E  +  E ++++++  GY+KR  L
Sbjct: 459 ALLNVIKDELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A       +  + +++ D V  +   +T   V+ F++ G      V +LP    + 
Sbjct: 519 RSFNASG-----KEEIGLKERDGVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ + + ER+       +     +   ++ AT+ G ++++ LS F     S  
Sbjct: 574 LGQHVSQIVPIEEDERVVNCYTVSDFN---DEHAIITATRQGMIKKSLLSGFKSTRTSKP 630

Query: 674 I-AMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + AMK+   D ++SV           I L T  G  + +P+S +    G  + G++ I+L
Sbjct: 631 LVAMKVKEGDALISVMYVPANAASQCITLLTHRGMSLTYPMSEL-PDTGLRAAGIKAINL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+    +   D                                            
Sbjct: 690 KDEDHVVLADHIQPQDT------------------------------------------- 706

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP--- 846
                     IL  +++G  KR      + + R+ +GI      K      +VA      
Sbjct: 707 ----------ILIATQRGALKRIGFKVLQQAKRAQRGITLLKELKKQPH-RVVAARVCHP 755

Query: 847 -------VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                  V+  D++      G +      +I ++ + T G  +  T 
Sbjct: 756 EQSQYRLVSQQDEV-----TGLI-----KDIHLSEQYTNGSFVVDTN 792



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 16/212 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD---ADYDERICY 754
             T+ G   R   +++R F   N+ G   I L + D V+ +      D      ++    
Sbjct: 506 SLTQAGYIKR---TSLRSF---NASGKEEIGLKERDGVLKIIETNTQDYVMVFTNKGRYL 559

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +     +   D  +  S       +  +           E  I+T + +G  K++  
Sbjct: 560 LIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVNCYTVSDFNDEHAIITATRQGMIKKSLL 619

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN---DQIILVSDKGTLIRVPVNEIR 871
             F+ + R+ K + A  V +     AL++V  V  N     I L++ +G  +  P++E+ 
Sbjct: 620 SGFKST-RTSKPLVAMKVKEG---DALISVMYVPANAASQCITLLTHRGMSLTYPMSELP 675

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                  G+   +   ++ VV  + I+  + +
Sbjct: 676 DTGLRAAGIKAINLKDEDHVVLADHIQPQDTI 707



 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 17/122 (13%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  +   + +   E  +L++++ G+ KRTS   F  S +   G++        E  
Sbjct: 484 EEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSLRSFNASGKEEIGLK--------ERD 535

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++ +   N  D +++ ++KG  + +PV+++         V        + V  +  I E
Sbjct: 536 GVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPD-------VKWKDL--GQHVSQIVPIEE 586

Query: 900 SE 901
            E
Sbjct: 587 DE 588


>gi|325978153|ref|YP_004287869.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325178081|emb|CBZ48125.1| topoisomerase IV subunit A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 819

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 285/892 (31%), Positives = 447/892 (50%), Gaps = 81/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+ ++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKAIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNAS-----TVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   + +     ATK G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFATDESVLYAEIVDD---FGSQTYFAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +   +    +D+++ T  G  + F I  +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V S  +          +   +K M+ +    +        +  +   + +    
Sbjct: 687 LKDDDFVASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLRELKSKPHRVFM 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +   L                                       L  +  V+
Sbjct: 747 AGPVHASNDVQNL--------------------------------------DLFTISTVD 768

Query: 849 DND-QIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +D +I+ V S+KG + +  + ++ ++ R + G  I     DE V S  RI+
Sbjct: 769 SDDVEILEVHSNKGAVYQAILEDLNLSERTSNGSFISDKISDEGVFS-ARIK 819


>gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 803

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 278/882 (31%), Positives = 451/882 (51%), Gaps = 105/882 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR +        + ++ E  +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A       +  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNASG-----KEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 674 I-AMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + AMK+   D ++SV     +     I L T  G  + +P+S +    G  + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSEL-PDTGLRATGIKAINL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+                                                     
Sbjct: 690 KDEDHVV----------------------------------------------------- 696

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    E  IL  +++G  KR S    + + R+ +GI      K      +VA      
Sbjct: 697 LADHIQTEDTILIATQRGALKRISFKVLQQAKRAQRGITLLKELKKQPH-RVVAARVCRP 755

Query: 850 ND-QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTA 886
              Q  LVS +    G +      +I ++ + T G  +  T+
Sbjct: 756 EQSQYRLVSQQDETTGLI-----KDIHLSEQYTNGSFVVDTS 792



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 85/212 (40%), Gaps = 16/212 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD---YDERICY 754
             T+ G   R   +++R F   N+ G   I L + D V+ +      D      ++    
Sbjct: 506 SLTQEGYIKR---TSLRSF---NASGKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYL 559

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +     +   D  +  S       +  + +         E+ I+T + +G  K++  
Sbjct: 560 LIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITATRQGMIKKSLL 619

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQII-LVSDKGTLIRVPVNEIR 871
             F+ + R+ K + A  V +     AL++V  V  +   Q+I L++ +G  +  P++E+ 
Sbjct: 620 SGFKST-RTTKPLVAMKVKE---SDALISVMLVPADASSQLITLLTHRGMSLTYPMSELP 675

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                  G+   +   ++ VV  + I+  + +
Sbjct: 676 DTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707



 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  +   + +   E  +L+++++G+ KRTS   F  S +   G++        E  
Sbjct: 484 EEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK--------ERD 535

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVER 896
            ++ +   N  D  ++ ++KG  + +PV+++        G     I    +DERVV    
Sbjct: 536 GVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYT 595

Query: 897 IRESEIV 903
           + E    
Sbjct: 596 VSEFNDE 602


>gi|309800102|ref|ZP_07694295.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
 gi|308116269|gb|EFO53752.1| DNA topoisomerase IV, A subunit [Streptococcus infantis SK1302]
          Length = 825

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 451/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI E+    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIHVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +  V T   +L F++LG V    V  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLLFVQSVKTTQHLLIFTTLGNVIYRPVHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEVIYVEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D+LL ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDDVLLISRNGYALRFNIEEV-PVIGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + +  I   +          +K +S +    +        +  +   + +    
Sbjct: 688 LKADDVIQAAFICNTSSFYLLTHRGSLKRVSIEEIPATSRANRGLQVLRELKSKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         VSE+GF                              G L +   V 
Sbjct: 748 AGA-----------VSEQGFV-----------------------------GDLFS-TEVE 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           D +Q +++ S+ GT     + ++ ++ R + G  I  T  DE V
Sbjct: 767 DGEQTLVIQSNNGTTYEAILQDLNLSERTSNGSFISDTISDEEV 810



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 143/534 (26%), Gaps = 76/534 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIHVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E    ++              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D +L V++      +L+ T LG  +  P+  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLLFVQSVKTTQHLLIFTTLGNVIYRPVHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             +      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EEVIYVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYR-SKSVKYAKL--KDDTDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 645 IVAVAPIKLDD-VLLISRNGYALRFNIEEVPVIGAKAAGVKAMNLKADDVIQAA 697


>gi|28378500|ref|NP_785392.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum WCFS1]
 gi|254556714|ref|YP_003063131.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300767446|ref|ZP_07077358.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180657|ref|YP_003924785.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|28271336|emb|CAD64241.1| topoisomerase IV, subunit A [Lactobacillus plantarum WCFS1]
 gi|254045641|gb|ACT62434.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum JDM1]
 gi|300495265|gb|EFK30421.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046148|gb|ADN98691.1| DNA topoisomerase IV subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 816

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 286/895 (31%), Positives = 454/895 (50%), Gaps = 101/895 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K +
Sbjct: 4   EQPKIQELTLEDVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNQDGNTFDKAF 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+A+ R++QDW LR  LIE  GN GS+DGDP AA RYT
Sbjct: 64  RKSAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP
Sbjct: 124 EARLSKIAGEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  + ++++P   L+ LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R
Sbjct: 184 PHNLSEVIDAILFLMNHPKATLEDLMDFVKGPDFPTGGIIQGLAGIKQAYETGRGRIVVR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I    G++ QI V+EIPY+VNKA +++KI E+   K+I  IA++RDESDRQG  VV
Sbjct: 244 SRTKIVPLKGNKSQIEVSEIPYEVNKAQLVKKIDEIRILKKIEGIAEVRDESDRQGLSVV 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR  +A+ IL  L + T LQ  ++ NMVA+   +PE   L  IL A++  + +VV R
Sbjct: 304 IELKRDVNAEGILTYLLKNTDLQITYNFNMVAIYHQRPEHVGLKTILTAYLEHQRDVVTR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA DR H++ GL  A++ LD+V++ IR S + + A++ L+ +           
Sbjct: 364 RTQFNLQKAMDRQHIVQGLIKAMSILDQVIKTIRGSKDKKDAKQNLVSQ----------- 412

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             SE+Q  AI+ ++L RLT      +  E   L   I     IL
Sbjct: 413 ---------------FDFSEIQAEAIVTMQLYRLTNTDVTQLEKESAELAKAIATYQLIL 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +    L  ++++EL +V+    T R T I      L ++ E  I +ED++V +SH GY+K
Sbjct: 458 AEPKELDKVLRRELKAVQKAYPTSRLTEIQNEIQELKVKTEVVIPQEDVIVMISHDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y A            ++DED+   L   ST   ++ F+++G +    ++ +   
Sbjct: 518 RTSLRSYSASEPDDN-----GLKDEDYPIYLAKNSTLDHLMMFTNMGHLIYRPIYEIADA 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ +   + L + ERIT        E+       + AT  G +++   +D+    
Sbjct: 573 KWKDTGEHISQTIGLAENERITW---VYSFENLKATGKFLVATSDGYIKQTAFADYTPGR 629

Query: 670 RSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                A   +K+ S D  +             ++L T+ G  +R+ +S +    G  +VG
Sbjct: 630 TYKTRASQFIKMKSDDATVVTVEYLPAAPTGTLILITQHGYGLRYDLSEV-PTIGAKAVG 688

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L   D ++   I    D                                      
Sbjct: 689 VKSMDLR-DDAIVRATIAADDD-------------------------------------- 709

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           I  ++++G  K+    D  +++R+ +G++     K N    +  
Sbjct: 710 ---------------LIAMITQRGSFKKMKVADLPVTSRARRGVQVLRELKNNPH-RVAD 753

Query: 844 VFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              V  +     + +++D+G    +  ++   ++R + G  +  T  +   VS++
Sbjct: 754 YVLVASDANGVALDVLTDRGKHHSILNDDHPTSARYSNGSFVVDTDTEGEPVSMQ 808


>gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1]
          Length = 844

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/842 (32%), Positives = 408/842 (48%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPSDGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLKKGERALAVTSLSGAGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L + DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 43.6 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   ++          L      +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLKKGERALAVTSLSGAGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  +     +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|288905179|ref|YP_003430401.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
 gi|288731905|emb|CBI13470.1| DNA topoisomerase IV subunit A [Streptococcus gallolyticus UCN34]
          Length = 819

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 269/799 (33%), Positives = 422/799 (52%), Gaps = 43/799 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  ++ +L +++A R+E++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIVPMLTSYIAHRKEIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNAS-----TVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   + +     ATK G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFATDEYILYAEIVDD---FGSQTYFAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +   +    +D+++ T  G  + F I  +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN---I 785
           L   D V S  +          +   +K M+ +    +        +  +   + +   +
Sbjct: 687 LKDNDFVASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLRELKSKPHRVFM 746

Query: 786 SEERCQELKLKEQFILTVS 804
           +        ++   + T+S
Sbjct: 747 AGPVHASNDVQNLDLFTIS 765



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 58/470 (12%), Positives = 130/470 (27%), Gaps = 30/470 (6%)

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNEL 477
             +   ++  I+L  D+      +  +  +++Q      ++ +       +G   +    
Sbjct: 290 ESDRDGLRIAIELKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIVPMLTSY 349

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            +   EI               +   E L     +       I          D      
Sbjct: 350 IAHRKEIIVARSKFDKEKAEKRLHIVEGLIRVISILDD---VIALIRASENKADAKENLK 406

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +    S       V L +YR                 + +T L                 
Sbjct: 407 VSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITML--------KAIIGDERT 458

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +           L + +     +              V  TK G +
Sbjct: 459 MYNVMKRELREVKKKFATP------RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYI 512

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     +          +     DE++ V        +L+ T LG  +  PI  +    
Sbjct: 513 KRTSPRSYNASTVEE---IGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIR 569

Query: 718 GRNSVGV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            ++      + I + A  + ++   IV    +        +  +    R          S
Sbjct: 570 WKDIGEHLSQTITNFATDEYILYAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKS 629

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +   N  +       +    ++ V+  G+    +  +  +      G++A ++  
Sbjct: 630 KSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINLKD 689

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            +     VA   V + D   +++ +G+L R+    I   SRA +G+ +  
Sbjct: 690 NDF----VASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLR 735



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 22/252 (8%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           T +  ++R        F     +   A       EI       +E+  +  TK G   R 
Sbjct: 458 TMYNVMKRELREVKKKFATPRLTELQAEA--ETIEIDVASLIVEEDTFVSVTKGGYIKR- 514

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLI 765
             ++ R +   N+  V  I     D++I +A      H     +      + +     + 
Sbjct: 515 --TSPRSY---NASTVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIR 569

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNR 822
             D  E  S    +                  Q     ++ G  KR    +F   R    
Sbjct: 570 WKDIGEHLSQTITNFATDEYILYAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYK- 628

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             K ++   +   N   ++V + P+  +D +++V+  G  +   + E+ +      GV  
Sbjct: 629 -SKSVKYAKL--KNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGAKAAGVKA 684

Query: 883 FSTAKDERVVSV 894
            +   ++ V S 
Sbjct: 685 INLKDNDFVASA 696


>gi|306833367|ref|ZP_07466494.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
 gi|304424137|gb|EFM27276.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus bovis ATCC
           700338]
          Length = 819

 Score =  630 bits (1625), Expect = e-178,   Method: Composition-based stats.
 Identities = 267/770 (34%), Positives = 411/770 (53%), Gaps = 40/770 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRATLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKDTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LM  + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMAFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIESLKGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +I +L +++A R+E++V R+
Sbjct: 302 LKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKEIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KVSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITMLKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFATPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSYNAS-----TVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   + +     ATK G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFATDEYVLYAEIVDD---FGSQTYFAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +   +    +D+++ T  G  + F I  +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           L   D V S  +          +   +K M+ +    +        +  +
Sbjct: 687 LKDDDFVASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLRE 736



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/470 (12%), Positives = 130/470 (27%), Gaps = 30/470 (6%)

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNEL 477
             +   ++  I+L  D+      +  +  +++Q      ++ +       +G   +    
Sbjct: 290 ESDRDGLRIAIELKKDADEQTVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSY 349

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            +   EI               +   E L     +       I          D      
Sbjct: 350 IAHRKEIIVARSKFDKEKAEKRLHIVEGLIRVISILDD---VIALIRASENKADAKENLK 406

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +    S       V L +YR                 + +T L                 
Sbjct: 407 VSYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITML--------KAIIGDERT 458

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +           L + +     +              V  TK G +
Sbjct: 459 MYNVMKRELREVKKKFATP------RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYI 512

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     +          +     DE++ V        +L+ T LG  +  PI  +    
Sbjct: 513 KRTSPRSYNASTVEE---IGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIR 569

Query: 718 GRNSVGV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            ++      + I + A  + V+   IV    +        +  +    R          S
Sbjct: 570 WKDIGEHLSQTITNFATDEYVLYAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYKS 629

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +   N  +       +    ++ V+  G+    +  +  +      G++A ++  
Sbjct: 630 KSVKYAKLKNADDSVVTISPIALDDVMIVTHNGYALHFNIEEVPVVGAKAAGVKAINL-- 687

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +    VA   V + D   +++ +G+L R+    I   SRA +G+ +  
Sbjct: 688 --KDDDFVASAFVANTDSFFILTQRGSLKRMATELIPATSRANRGLQVLR 735



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 81/252 (32%), Gaps = 22/252 (8%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           T +  ++R        F     +   A       EI       +E+  +  TK G   R 
Sbjct: 458 TMYNVMKRELREVKKKFATPRLTELQAEA--ETIEIDVASLIVEEDTFVSVTKGGYIKR- 514

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLI 765
             ++ R +   N+  V  I     D++I +A      H     +      + +     + 
Sbjct: 515 --TSPRSY---NASTVEEIGKRDDDELIFVAQAKTTQHLLIFTNLGNVIYRPIHELTDIR 569

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNR 822
             D  E  S    +                  Q     ++ G  KR    +F   R    
Sbjct: 570 WKDIGEHLSQTITNFATDEYVLYAEIVDDFGSQTYFAATKLGQIKRFERKEFTPWRTYK- 628

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             K ++   +   N   ++V + P+  +D +++V+  G  +   + E+ +      GV  
Sbjct: 629 -SKSVKYAKL--KNADDSVVTISPIALDD-VMIVTHNGYALHFNIEEVPVVGAKAAGVKA 684

Query: 883 FSTAKDERVVSV 894
            +   D+ V S 
Sbjct: 685 INLKDDDFVASA 696


>gi|154488789|ref|ZP_02029638.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
 gi|154082926|gb|EDN81971.1| hypothetical protein BIFADO_02096 [Bifidobacterium adolescentis
           L2-32]
          Length = 891

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/901 (30%), Positives = 427/901 (47%), Gaps = 123/901 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMSLNP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+  AA  +  D+ ++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G VI+GR GI+ AY TGRG+
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIVGRKGIREAYETGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +D   
Sbjct: 252 LTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R 
Sbjct: 312 GTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L+        
Sbjct: 372 VVIRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIA------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E + L   I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------ 534
              IL+S   L G++  E+     +  TPRRT +++   +      +             
Sbjct: 466 LERILASDEALDGVVIDEMDDAVAKYGTPRRTVLLDEDEEGNLTPVVAHGDDGVSANAMA 525

Query: 535 --------------------------------------REDMVVTVSHLGYVKRVPLSVY 556
                                                  E   V +S  G + R   +  
Sbjct: 526 AARAAATVSSAAADVAAAAKAAKKAGDENATASALQIDDEPCAVMLSATGLIAR---TSE 582

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI-------- 608
            A  R     +      +D +  +F  ST +S    +S G +    V  LP         
Sbjct: 583 DAVERWENRSASDGRAKDDQIVSMFRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLS 642

Query: 609 ---GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
              G        +       +GER+   +  P  +     + +   T++G V+R      
Sbjct: 643 VTGGVKAEELLGMTENTDPIRGERVIAAIDMPSTDDGGQLVPLALGTRNGVVKRWNRESP 702

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +       + L   DE+L+      E+ ++  +     + F    +R   GR + G+ 
Sbjct: 703 TTM--DSWSVIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMA 759

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+G  V + A+V      ++         SA   ++     +  +L          
Sbjct: 760 GIRLAEGCSVAAFAVVPDGKVTWNYEEGENGLFSASGAVVLTVAGDSEALPG-------- 811

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                             +E G  K T    +    R   G+R+    K      L+  F
Sbjct: 812 ------------------TENGAAKVTPLEMYPTKGRGTGGVRSQRFLKG--QDTLILAF 851

Query: 846 P 846
            
Sbjct: 852 V 852



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 76/255 (29%), Gaps = 42/255 (16%)

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            DE  +      +++   ++ +  G   R    A+  +  R++   R     K DQ++SM
Sbjct: 551 GDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRA----KDDQIVSM 606

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                  +           ++    L     +   S+      E  +      +    E+
Sbjct: 607 FRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGER 666

Query: 799 FILTV-----------------SEKGFGKR------TSSYDFRISNRSGKGIRATDVSKI 835
            I  +                 +  G  KR      T+   +         +        
Sbjct: 667 VIAAIDMPSTDDGGQLVPLALGTRNGVVKRWNRESPTTMDSWS--------VIDLK---- 714

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +   ++A     D D+++ VS   +L+      +R   R   G+     A+   V +  
Sbjct: 715 -DDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSVAAFA 773

Query: 896 RIRESEIVDEAESTE 910
            + + ++    E  E
Sbjct: 774 VVPDGKVTWNYEEGE 788



 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 85/295 (28%), Gaps = 50/295 (16%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R       +         +    D+I+S+   +  +   L T
Sbjct: 561 QIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAK-DDQIVSMFRTSTRSSYGLVT 619

Query: 701 KLGQCVRFPISAIRVFAGRN----SVGVRGISLAK---------GDQVISMAIVLHADAD 747
             G+ V   +  +   +       + GV+   L           G++VI+   +   D  
Sbjct: 620 SAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVIAAIDMPSTDDG 679

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +   +   +  + ++       +   ++ +       E + +++ +   ++  
Sbjct: 680 GQLVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDDDEVLAAAEARDEDRLVFVSTD-- 737

Query: 808 FGKRTSSYDF-----RISNRSGKGIRATDVSKIN--------EIGAL------------- 841
               +S   F     R   R+  G+    +++            G +             
Sbjct: 738 ----SSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSVAAFAVVPDGKVTWNYEEGENGLFS 793

Query: 842 ---VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVV 892
                V  V  + + +  ++ G     P+       R T GV         + ++
Sbjct: 794 ASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLI 848


>gi|326406528|gb|ADZ63599.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis CV56]
          Length = 840

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 276/887 (31%), Positives = 457/887 (51%), Gaps = 73/887 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+V+R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIVKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +  +E E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +          +  RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASS-----ALEEIGKRDDDELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
           +  G+ L   LS    +     +   ++ +  N   ++  T++G ++   R   S +   
Sbjct: 571 KDIGEHLSQSLSNFSADEKVIFVQIVDEFAGEN---LLVVTRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + T  Q  D++L ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGEDDEIVLITPVQFADLMLISENGYALRFNLDDVPVLGARAA-GVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD++ S   V         +  ++K +       +        +        +    
Sbjct: 687 LKNGDKIKSAFFVNSNSWYLLTQRAFIKRVKTDDIPATSRANRGLQVLRTLKTNNHTVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +   L  +E+          F  +       +A    +              
Sbjct: 747 AGLINSTADLSAL--TEE-------LDLFSQA-------KAPATKET------------- 777

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 778 -DEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|239631505|ref|ZP_04674536.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239525970|gb|EEQ64971.1| DNA topoisomerase IV subunit A [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 814

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 291/901 (32%), Positives = 449/901 (49%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADN-----GLKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKV---LAVFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 671 --SGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I++    T +   D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTTAKVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G ++ +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVMTLNPAQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|19745974|ref|NP_607110.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS8232]
 gi|73921621|sp|Q8P1B3|PARC_STRP8 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|19748135|gb|AAL97609.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes MGAS8232]
          Length = 819

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|314923403|gb|EFS87234.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL001PA1]
          Length = 844

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 276/842 (32%), Positives = 403/842 (47%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+PD DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPDADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +   AR  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E   
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERGE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I+S  + L  ++  EL  V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIVSDEAELRRVVSGELAEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S    + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATSLLARIDTADGLPSGGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGEGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L   DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKDGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 49/164 (29%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   +E          L  +   +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGEGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  + +   +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKDGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A]
 gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae]
 gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 823

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 688 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 748 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 645 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916826|gb|AAZ93281.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916834|gb|AAZ93285.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916902|gb|AAZ93319.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 279/883 (31%), Positives = 452/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   ++  +       +   +     +      AT+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/883 (32%), Positives = 454/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +      AT+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
 gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14]
          Length = 826

 Score =  630 bits (1624), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 691 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 751 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|223043266|ref|ZP_03613313.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
 gi|222443477|gb|EEE49575.1| DNA topoisomerase IV, A subunit [Staphylococcus capitis SK14]
          Length = 800

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 462/884 (52%), Gaps = 92/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  + K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFEKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVAFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKHIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRSGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+  +IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHAELEALIKKLRNILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++VSH GY+KR   
Sbjct: 459 ALLSVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSVSHHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E++   +    ++   ++ + V ATK+G ++++ +S F     +  
Sbjct: 574 LGQHVSQIVPIDEDEQV---VDVYNEKDFNSDAFYVMATKNGMIKKSSVSQFKTTRFNKP 630

Query: 674 IA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  MK+   DEI++V     +  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LVGMKVKDHDEIVNVIRLESDQLITVLTHKGMSLTYSTSEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTESVSDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL ++++G  KR S    +++ R+ +GI      K N    +V    V +  +
Sbjct: 704 -------ILMITQRGAIKRISYKVLQVAKRAQRGITLLKELKKNPH-RIVDAAVVKEGQE 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              V          +NE+ ++ + T G  I       +VVS+  
Sbjct: 756 TYTVFSNNHEESGNINEVHLSEQYTNGSFIIDVDDFGQVVSMTL 799



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  +  G   R   ++ R F   N+ GV  I L  GD+++    V
Sbjct: 493 DKEVMVP---SEEVILSVSHHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLKYQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  + +   ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVVDVYNEKDFNSDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K++S   F+ + R  K +    V        +V V  +  +  I +++ 
Sbjct: 604 FYVMATKNGMIKKSSVSQFKTT-RFNKPLVGMKVKD---HDEIVNVIRLESDQLITVLTH 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + +S+ +
Sbjct: 660 KGMSLTYSTSELSDTGLRAAGVKSINLKDEDYVVMTESVSDSDSI 704


>gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585]
 gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974]
 gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585]
 gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           Taiwan19F-14]
          Length = 826

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 691 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 751 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|312863329|ref|ZP_07723567.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
 gi|311100865|gb|EFQ59070.1| DNA topoisomerase IV, A subunit [Streptococcus vestibularis F0396]
          Length = 818

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 280/892 (31%), Positives = 441/892 (49%), Gaps = 82/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNAS-----TIDEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   +     + ATK G ++R +  +F      
Sbjct: 571 KDLGEHLSQTITNLSKDEEVLYAEILDD---FETGTYLAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +   T  Q +DI++ T+ G  +RF    +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKDNSDFIVTVTPIQLDDIMIITQKGYALRFNADEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V ++ +          +   +K ++      +        +  +   + +    
Sbjct: 687 LKDDDTVQAVFVANTQSFYLLTQRASLKRVATADIPQAKRAGRGLQVLRELKTKPHSVFT 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                          +E                               EI  L    PV 
Sbjct: 747 AGP----------VFTEN---------------------------AGGEIDLL--ATPVE 767

Query: 849 DNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +  Q +LV+   G    V ++ + ++ R + G  I   A  E  V   +I E
Sbjct: 768 ETPQTLLVTATTGETEEVDLSLLNLSDRTSNGSFIEGLADKE--VFSAKIIE 817


>gi|257430712|ref|ZP_05607094.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257278840|gb|EEV09459.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           68-397]
          Length = 800

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFILNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 452/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IE   G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  629 bits (1623), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/887 (31%), Positives = 455/887 (51%), Gaps = 87/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN  ++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYFFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+S 
Sbjct: 406 ----------KISYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++ G V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFIQSAKTTQHLLMFTTFGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYVEVVD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D++L ++ G  +RF I  +    G  + GV+ I
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVVLISQNGYALRFNIEEV-PVVGAKAAGVKAI 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D + +  I   +      +   +K +S      +   +    +  +   + +   
Sbjct: 687 NLKADDALQAAFICNMSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP- 846
                          V+E+GF                                +V +F  
Sbjct: 747 LAGA-----------VAEQGF--------------------------------VVDLFSI 763

Query: 847 -VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            V+ NDQI+LV S+KGT+ +  + ++ ++ R + G  I  T  DE V
Sbjct: 764 EVDGNDQILLVQSNKGTIYQSRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 141/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYFFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKISYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L            S    +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIISDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ +++      +L+ T  G  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFIQSAKTTQHLLMFTTFGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 644 QIVAVAPIKLDD-VVLISQNGYALRFNIEEVPVVGAKAAGVKAINLKADDALQAA 697


>gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
 gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016]
          Length = 826

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 691 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 751 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|282920623|ref|ZP_06328344.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
 gi|282594285|gb|EFB99272.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9765]
          Length = 800

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 275/887 (31%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
 gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309]
          Length = 823

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 285/905 (31%), Positives = 419/905 (46%), Gaps = 118/905 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  +    E+++ IT + ++DEM+ S+L YA++VI  RA+PD RDGLKPV RRILF M Q
Sbjct: 4   KDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQ 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D 
Sbjct: 64  MGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+  AA  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GI
Sbjct: 123 DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL E + G + ++DNP   +  LM  I GPD P G VI+G  GIK AY 
Sbjct: 183 AVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKEAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+   R    IE+ +  +  I+VT++PY V    ++EKI E     R+  I+ +++ 
Sbjct: 243 TGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F
Sbjct: 303 TDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V  RR+++ L K  DR H++ GL IA+ ++D+V+ IIR S + E AR  LM   
Sbjct: 363 LDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMT-- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q   ILELRL RLT   R ++  E + L 
Sbjct: 421 ------------------------AFDLSEAQANYILELRLRRLTKFSRIELEAERDELL 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------------ 529
            +I    +IL     L  ++K+EL  V D L TPRRT ++                    
Sbjct: 457 AKIASLREILEDPELLRALVKKELREVSDRLGTPRRTLLLASTGTPVGAAAADDAALAAL 516

Query: 530 ----------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                     E  I  +  VV +S  G + RV          GG           D    
Sbjct: 517 PSVSRSGKGLELQIPDDPCVVVLSSSGALARV---------EGGDPLEPGPRAASDGWRV 567

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
               +  + V   +  G  ++  V  LP       G +L   +  +        +P    
Sbjct: 568 QLPSTARSQVAVVTEDGIAHRIDVVDLPALPRFETGLSLAGAMPASLLLHTD--VPAVGL 625

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                   V   T  G V+R +     +        + L+  D ++  + C+ E D++  
Sbjct: 626 LDPEGTDVVAMGTARGTVKRLRPDVLQR---DEWEVITLEDGDRLVGFDRCSDEADLVFI 682

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +   Q +R P + +R   GR + G+ G+ L  G + +   +V          +       
Sbjct: 683 SSDAQLLRTPAAKVRP-QGRTAGGMAGMKLNPGVEALGFWVVEAPIDAVVVTVAAALGAL 741

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                 +                                           K T    +  
Sbjct: 742 PGTGQTT------------------------------------------VKVTPFECYPT 759

Query: 820 SNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             R G+G+R     +  +   +  V   P          S  G+ + +P  + R   R  
Sbjct: 760 KGRGGQGVRCQRFLRGEDRLDIAWVGTKPAR------AASADGSPVELPAEDER---RDG 810

Query: 878 KGVVI 882
            GV I
Sbjct: 811 SGVPI 815



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   LV     +D   ++ +S    L+R P  ++R   R   G+        
Sbjct: 662 EDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNPG 714


>gi|239917820|ref|YP_002957378.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|281413687|ref|ZP_06245429.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
 gi|239839027|gb|ACS30824.1| DNA topoisomerase IV subunit A [Micrococcus luteus NCTC 2665]
          Length = 868

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 284/854 (33%), Positives = 415/854 (48%), Gaps = 90/854 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                   E++ I  V +++EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M +M
Sbjct: 14  DAPRPLPLEQENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRM 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK AR+ GEVMGK HPHG+AAIYDA+ R+AQ +SLRL +++G GNFGS+D D
Sbjct: 74  GLRPDRGHVKSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLD-D 132

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+  AA  L  DL + TVDF PNYD  FQ+P VL A YPN+LVNG  GIA
Sbjct: 133 GPAAPRYTEARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIA 192

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV G   ++ +P+  L+A+M  I GPD P+G  I+G  G+++AYAT
Sbjct: 193 VGMATNMAPHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDGVRDAYAT 252

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG+  +R    +E+ S  R  +VVTE+PY V    ++E+I   V  K++  IAD+ D +
Sbjct: 253 GRGTFRMRAAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLT 312

Query: 304 DR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR  G R+ IELK G +   +L  LYR+T L+  F +N VAL   +P+   L+ +L+ +V
Sbjct: 313 DRKNGLRLQIELKSGFNPQAVLAALYRHTPLEETFGINNVALVDGQPQTLGLLPLLRVYV 372

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +VV RRT + L K RDR H++ GL +A+ ++DEV+ IIR S +   AR  LM    
Sbjct: 373 DHRLDVVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLM---- 428

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                 G   L++VQ   ILELRL +LT   R +++ E + L  
Sbjct: 429 ----------------------GVFDLTQVQADHILELRLRQLTKFSRIELQAERDELQA 466

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED----------- 531
            I E   IL+S +RL  ++  EL +V DE    RRT ++E                    
Sbjct: 467 AIAELEAILASDARLREVVSAELQAVADEHGDDRRTVLLEAETAAAPAAGPAPSGPTPAG 526

Query: 532 --------CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
                    +        +S  G + R       A +           R  D    +   
Sbjct: 527 AAEAGVDLMVPDTACWALLSTSGRLLRTADRTPIAPQG--------RRRKHDAFASVVPT 578

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +    +   +S G +++ +   LP+    +   A+   L   +   +             
Sbjct: 579 TARGEIGALTSAGALHRLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPL- 637

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLTTKL 702
            +  +   T HG V+R +    +        A+ L   D ++       E + ++  T+ 
Sbjct: 638 -DTVMALGTAHGVVKRVRPEWPLNRQVVD--AVALKDGDAVVGAAPAPDEADQLVFLTRT 694

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           GQ +R+  SA+R   G    GV GI LA GD V++  +   A               A  
Sbjct: 695 GQLLRYAASAVRP-QGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVV 753

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
             ++    ++                               S  G  K T   ++    R
Sbjct: 754 VTVTDGEADVLG-----------------------------SAPGSVKVTPLGEYPAKGR 784

Query: 823 SGKGIRATDVSKIN 836
              G+RA  + K  
Sbjct: 785 GTGGVRAHRLLKGE 798



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+ +R          GR           K D   S+                  H
Sbjct: 544 LLSTSGRLLRTADRTPIAPQGRR---------RKHDAFASVVPTTARGEIGALTSAGALH 594

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV----SEKGFGKRTS 813
                 L              +     +      E  +    + TV    +  G  KR  
Sbjct: 595 RLQAVDLPVAGEPSAAPAMTAALPAAELVPLAKGETLVALVPLDTVMALGTAHGVVKRVR 654

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRVPVNEIRI 872
             ++ + NR     +  D   + +  A+V   P  D  DQ++ ++  G L+R   + +R 
Sbjct: 655 P-EWPL-NR-----QVVDAVALKDGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRP 707

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
              A  GV     A  + V++      + + +
Sbjct: 708 QGPAGGGVAGIRLAAGDTVLAFGVAPAASLTE 739



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 82/283 (28%), Gaps = 47/283 (16%)

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           D    +       +  G + R      I               D   SV   T   +I  
Sbjct: 533 DLMVPDTACWALLSTSGRLLRTADRTPIAPQGRR------RKHDAFASVVPTTARGEIGA 586

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGIS----------LAKGDQVISMAIVLHADADY 748
            T  G   R     + V    ++     ++          LAKG+ ++++  +       
Sbjct: 587 LTSAGALHRLQAVDLPVAGEPSAAP--AMTAALPAAELVPLAKGETLVALVPL------- 637

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           D  +         +R+          +   +  +G+            +Q +  ++  G 
Sbjct: 638 DTVMALGTAHGVVKRVRPEWPLNRQVVDAVALKDGDAVVGAAPAPDEADQLV-FLTRTGQ 696

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKIN--------------EIGALVAVFP-------V 847
             R ++   R    +G G+    ++  +              E GA  A  P       V
Sbjct: 697 LLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFGVAPAASLTETGADAAAHPRPAVVVTV 756

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            D +  +L S  G++   P+ E     R T GV      K E 
Sbjct: 757 TDGEADVLGSAPGSVKVTPLGEYPAKGRGTGGVRAHRLLKGES 799


>gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
 gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745]
          Length = 817

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/893 (31%), Positives = 462/893 (51%), Gaps = 100/893 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G   +K 
Sbjct: 3   DNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+QDW LR+ LIE  GN GS+D DPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +L+D+ K+TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+D  +  I +P+  L+ LME ++GPDFPTG +I G  G+K AY TG+G +V+
Sbjct: 183 PPHNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGGIIQGINGLKQAYRTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + +E+  G+++QI+V+EIPY+VNKA +++KI E+   K++  IA++RDESDR G  +
Sbjct: 243 RSKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDESDRDGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+   A  ILN L++ T LQ  ++ NMVA+N  +PER  L  I++A+V F++EV+ 
Sbjct: 303 AIELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLRPERMGLKEIIQAYVDFQKEVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTK+ L KA DR H++ GL  A++ LD+V++ IR S + + A++ L+            
Sbjct: 363 KRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLIT----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   SE Q  AI+ L+L RLT     ++++E  +L   I E  +I
Sbjct: 412 ---------------SFDFSERQAEAIVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L++ + L  ++  EL  VK    TPR + I E + +  ++    +  E ++V VS  GY+
Sbjct: 457 LNNPNELSKVLSAELRQVKKRYATPRLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A            +++ DF      ++T   ++  ++ G +    V  +  
Sbjct: 517 KRSSLRSYKASAEED------GLKEGDFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIME 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   + L   E I         +     +  + AT  G ++R  L DF   
Sbjct: 571 TRWKDTGEHISQAIGLADDEIILKAFDVKNFD---EPVSFLIATSDGYIKRTSLKDFKPG 627

Query: 669 NRSGKIA---MKLDSRD-EILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNS 721
               K A   +KL + D ++++V   T +     ILL T+ G  +R+ +  +    G  +
Sbjct: 628 RTYRKKAAVYIKLKAADAKVVNVAKLTSQSTKETILLATRNGYGLRYDLIEV-PEVGPRA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ + L + D++ +  +V   D                                    
Sbjct: 687 AGVKSMDLRE-DEIANFVLVNDHD------------------------------------ 709

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++ +G  K+    +  +++R+ +G++     K      +
Sbjct: 710 -----------------QIGLITNRGSFKKMKVSEISVTSRARRGVQILRELKKEPH-RV 751

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +  V   +   + + +G +  +   E  +  R + G  +     +   VS+
Sbjct: 752 ADIEVVEPGEAFEVRTSRGLIHDIIPLEHPLNERYSNGSFLVDVDSEGVPVSM 804



 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 106/292 (36%), Gaps = 21/292 (7%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L++ +     +      +      +V  ++ G ++R+ L  +            L   D 
Sbjct: 483 LSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYLKRSSLRSYKASAEEDG----LKEGDF 538

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR-NSVG---VRGISLAKGDQVISMA 739
            +  +     + +++ T  G  +  P+  I     R    G    + I LA  + ++   
Sbjct: 539 TVFKKELNTLDHLIMLTNKGNLIYRPVHEI--METRWKDTGEHISQAIGLADDEIILKAF 596

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-----SSVEGNISEERCQELK 794
            V + D      I        +  L           K        + +  +        +
Sbjct: 597 DVKNFDEPVSFLIATSDGYIKRTSLKDFKPGRTYRKKAAVYIKLKAADAKVVNVAKLTSQ 656

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             ++ IL  +  G+G R    +         G+++ D+ +      +     VND+DQI 
Sbjct: 657 STKETILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLRE----DEIANFVLVNDHDQIG 712

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRESEIVD 904
           L++++G+  ++ V+EI + SRA +GV I    K E  RV  +E +   E  +
Sbjct: 713 LITNRGSFKKMKVSEISVTSRARRGVQILRELKKEPHRVADIEVVEPGEAFE 764


>gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC
           824]
 gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824]
 gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018]
          Length = 954

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 298/926 (32%), Positives = 472/926 (50%), Gaps = 85/926 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I  + + + M  +YL YA+ V   RA+PD+RDGLKPVHRRI++G   +    +K 
Sbjct: 8   PKDSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGSYMLKAFPDKP 67

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+++GKYHPHG++++Y+++  +AQ+++ R  LI+G GN+GSVDGD  AA RY
Sbjct: 68  YYKSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSVDGDSAAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +++D+ KD VD   NY GS +EP VL A YPN+LVNG  GIAVG++TNI
Sbjct: 128 TEARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAFGIAVGLSTNI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  +  IDN D+ ++ LME ++GPD PTG +I+G+  +  AY TG G + +
Sbjct: 188 PPHNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGGIIIGKNSLIAAYETGEGKVTL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI----VDIADLRDESDRQ 306
           R  + IE+    R  IV++E PY+ NKA +L+ I+E+  +K+       I+D+RDESDR+
Sbjct: 248 RARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESISDIRDESDRR 307

Query: 307 GYRVVIELKRGASAD---VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           G R VIE K+ +  D    IL  L++ T LQ   + NMVAL   KPE   L  I+  +V 
Sbjct: 308 GIRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALADGKPETMGLKTIIGHYVN 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R+++V RRTK+ LN AR R +++ G   A+  +DE++  IR S + + +   L+ +   
Sbjct: 368 HRKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDSENNLVAK--- 424

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                     +  Q  AI+EL L +LTGL  +  + E + L   
Sbjct: 425 -----------------------FGFNNEQATAIVELMLYKLTGLEIETFKKEYDELSKL 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
           IK+   ILS    LL ++K EL  V+ +    RRT IVE      ++ E+  V ED+VVT
Sbjct: 462 IKKLEKILSDEKELLRVVKNELKEVEKKYGEDRRTSIVEDDSEAKIDVEEFTVVEDIVVT 521

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S+ GY+K VP   Y    R     S +  R+ DF   L   +T  ++L F+  G +YK 
Sbjct: 522 MSNDGYIKSVPKKTY---LRSNSDVSDIEYREGDFNRFLIETNTAHNLLMFTDEGNMYKL 578

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   +P    + +G+ + N++      +   I+     ES      ++F T  G++++  
Sbjct: 579 RGNSIPEYKWKEKGEKIDNLIKGIDLGKEK-ILNIYSVESLTEQKDIIFITDRGSLKKTS 637

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVRFPISAIRVFAG 718
           L  F  I  S  +A+KL   ++++  E      +E  I ++T+ G         I     
Sbjct: 638 LDKFDTI-YSKIMALKLKKDEKLIKAELVLRTREEGFIKVSTEKGLDFTVREPLIEEMD- 695

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN- 777
           RN +G + IS+   D+++S   V + D            +   +   SG+  + T+    
Sbjct: 696 RNKMGHQCISVCPMDRIVSSEFVENDDYRTFGIQINKNGIIKTKASSSGNYIDTTTSSTL 755

Query: 778 --------------------------------DSSVEGNISEERCQELKLKEQFILTVSE 805
                                           + +    I +    E   + +FI   S 
Sbjct: 756 LIFIDDGRVINIPSYMFKNMDDKVLNLSELYCEFNSNNKIIKTLSIEEFNENKFIYFFSS 815

Query: 806 KGFGKRTSSYDFRISNRSGKGI-RATDVSKINEIGALVA-VFPVNDNDQIILVSDKGTLI 863
           KGF K+T   +F  S    KGI     +   N+   LV      N+ ++++L++ K   I
Sbjct: 816 KGFVKKTKLSEFVES----KGIEVCYKL--RNKEDMLVNVDVSENEEEEVVLITKKAMGI 869

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDE 889
           +   + + +  +   GV   S  +++
Sbjct: 870 KFLSSSVSVMGKIASGVTGISLNEED 895



 Score = 37.8 bits (86), Expect = 8.3,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 16/216 (7%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADYD 749
           E+ ++  +  G     P         R++  V  I   +GD    +I      +     D
Sbjct: 516 EDIVVTMSNDGYIKSVPKKT----YLRSNSDVSDIEYREGDFNRFLIETNTAHNLLMFTD 571

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN--ISEERCQELKLKEQFILTVSEKG 807
           E   Y    ++       +  E           G   I      E   +++ I+ ++++G
Sbjct: 572 EGNMYKLRGNSIPEYKWKEKGEKIDNLIKGIDLGKEKILNIYSVESLTEQKDIIFITDRG 631

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT--LIRV 865
             K+TS   F         I A  + K  ++     V    +   I + ++KG    +R 
Sbjct: 632 SLKKTSLDKFDTIY---SKIMALKLKKDEKLIKAELVLRTREEGFIKVSTEKGLDFTVRE 688

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           P+  I    R   G    S    +R+VS E +   +
Sbjct: 689 PL--IEEMDRNKMGHQCISVCPMDRIVSSEFVENDD 722


>gi|561880|gb|AAA53116.1| gyrase-like protein alpha subunit [Staphylococcus aureus]
          Length = 800

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLRDIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVYNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +   R +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLRDIRWKELGQHVSQIVPIEEDEVVINVYNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKVEDFVVMTEGVSENDTI 704


>gi|191638406|ref|YP_001987572.1| DNA topoisomerase IV subunit A [Lactobacillus casei BL23]
 gi|190712708|emb|CAQ66714.1| Topoisomerase IV, subunit A [Lactobacillus casei BL23]
 gi|327382435|gb|AEA53911.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei LC2W]
 gi|327385634|gb|AEA57108.1| DNA topoisomerase IV (Subunit C) [Lactobacillus casei BD-II]
          Length = 814

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 291/901 (32%), Positives = 448/901 (49%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADN-----GLKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKV---LAVFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 671 --SGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I++    T +   D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTTAKVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPAQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
 gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC
           27343]
          Length = 795

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 289/802 (36%), Positives = 452/802 (56%), Gaps = 36/802 (4%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PDL+DGLKPVHRRI++ M  +G+  +K + K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+ + RMAQ++S R  LI+G GNFGS+DGD  AA RYTE RL K +++L+ D+  DTV F
Sbjct: 61  YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             NYD S  EP  L    PN+LVNG  GIAVGMAT+IP HNL EVV    A IDN DI +
Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180

Query: 214 DALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D ++   I GPDFPTGA++   + ++  Y TGRGS++IR     E+     ++ VVTEIP
Sbjct: 181 DEILDNHILGPDFPTGALMTNGSKMREGYKTGRGSVIIRAKIDFEENKK-HDRFVVTEIP 239

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQ NKA ++EKIAELV++K I  I D+RDES+ +G R++IELK+ A+ DV+L++LY+YT+
Sbjct: 240 YQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKKDANPDVVLSKLYKYTA 299

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS FS+N++ LN   P    L  I+K +V F+  V+++R+ +  NK   R H+L  L I
Sbjct: 300 LQSSFSINLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEALHI 359

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+D+V+ II+ S   E A+                          I         E 
Sbjct: 360 ALDNVDDVINIIKNSKTSEEAK--------------------------IQLTNKYNFDEE 393

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AIL++RL RL GL RD I  E+ ++   +     +++++     ++K +L  + D+ 
Sbjct: 394 QNKAILDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKF 453

Query: 513 DTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
              RRT +++   +++EDE+ I     ++ +S  GY++R+    +R Q+RGG+G S    
Sbjct: 454 GDNRRTELIDEELINIEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAE 513

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERI 630
            ++       +      VLFF++ G VY+ K++ +   S  ARG  ++N L+ L   ++I
Sbjct: 514 PNDPIDIAT-MGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKI 572

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
           T I+P   ++  +N  Y+ F T+ G ++R K+S+F  INR+GK A+ L   D+++SV   
Sbjct: 573 TAILPLRNNKEKFN--YLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFAT 630

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           T ++ I +  + G+ +R   S +     R   GVR + L   D V+    +      +  
Sbjct: 631 TGQDTIFIANESGKVIRIKESVVNP-QSRVGSGVRALKLETNDVVVGA--ISSFKLTHIT 687

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +                +          ++     + +      +   IL +S  G   
Sbjct: 688 TVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLI 747

Query: 811 RTSSYDFRISNRSGKGIRATDV 832
           +T   +    +R+  G++A  +
Sbjct: 748 KTKVSNIPSLSRNASGVKAIRL 769


>gi|269940853|emb|CBI49235.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           TW20]
          Length = 800

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +I  S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIHSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|119026025|ref|YP_909870.1| DNA topoisomerase IV subunit A [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765609|dbj|BAF39788.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703]
          Length = 891

 Score =  629 bits (1622), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/901 (30%), Positives = 430/901 (47%), Gaps = 123/901 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+  AA  +  D+ ++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARMAPAALGMNADIAENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G VI+GR GI+ AY TGRG+
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEELMRYVPGPDWPGGGVIVGRKGIREAYETGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +D   
Sbjct: 252 LTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLDGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R 
Sbjct: 312 GTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L+        
Sbjct: 372 VVIRRRSEFRRKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIA------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E + L   I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKRRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------ 534
              IL+S   L G++  E+     +  TPRRT +++   +      +             
Sbjct: 466 LERILASDEALDGVVIDEMDDAVAKYGTPRRTVLLDEDEEGNLTPVVAHGDDGVSANAMA 525

Query: 535 --------------------------------------REDMVVTVSHLGYVKRVPLSVY 556
                                                  E   V +S  G + R   +  
Sbjct: 526 AARAAATVSSAAADVAAAAKAAKKAGDENATASALQIDDEPCAVMLSATGLIAR---TSE 582

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA--- 613
            A  R     +      +D +  +F  ST +S    +S G +    V  LP  S      
Sbjct: 583 DAVERWENRSASDGRAKDDQIVSMFRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLS 642

Query: 614 -----RGKALINILSLNQGERITTIMPFPEDESSWNNLYVV---FATKHGNVRRNKLSDF 665
                + + L+ +       R   ++   +  S+ ++  +V     T++G V+R      
Sbjct: 643 VTGGVKAEELLGMTENTDPIRGERVIAAIDMPSTDDDGQLVPLALGTRNGVVKRWNRESP 702

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             +       + L   DE+L+      E+ ++  +     + F    +R   GR + G+ 
Sbjct: 703 TTM--DSWSVIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTAGGMA 759

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI LA+G    + A+V      ++         SA   ++     +  +L          
Sbjct: 760 GIRLAEGCSAAAFAVVPDGKVTWNYEEGENGLFSASGAVVLTVAGDSEALPG-------- 811

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                             +E G  K T    +    R   G+R+    K      L+  F
Sbjct: 812 ------------------TENGAAKVTPLEMYPTKGRGTGGVRSQRFLKG--QDTLILAF 851

Query: 846 P 846
            
Sbjct: 852 V 852



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 75/255 (29%), Gaps = 42/255 (16%)

Query: 681 RDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            DE  +      +++   ++ +  G   R    A+  +  R++   R     K DQ++SM
Sbjct: 551 GDENATASALQIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRA----KDDQIVSM 606

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                  +           ++    L     +   S+      E  +      +    E+
Sbjct: 607 FRTSTRSSYGLVTSAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGER 666

Query: 799 FILTV-----------------SEKGFGKR------TSSYDFRISNRSGKGIRATDVSKI 835
            I  +                 +  G  KR      T+   +         +        
Sbjct: 667 VIAAIDMPSTDDDGQLVPLALGTRNGVVKRWNRESPTTMDSWS--------VIDLK---- 714

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +   ++A     D D+++ VS   +L+      +R   R   G+     A+     +  
Sbjct: 715 -DDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFA 773

Query: 896 RIRESEIVDEAESTE 910
            + + ++    E  E
Sbjct: 774 VVPDGKVTWNYEEGE 788



 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 86/295 (29%), Gaps = 50/295 (16%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R       +         +    D+I+S+   +  +   L T
Sbjct: 561 QIDDEPCAVMLSATGLIARTSEDAVERWENRSASDGRAK-DDQIVSMFRTSTRSSYGLVT 619

Query: 701 KLGQCVRFPISAIRVFAGRN----SVGVRGISLAK---------GDQVISMAIVLHADAD 747
             G+ V   +  +   +       + GV+   L           G++VI+   +   D D
Sbjct: 620 SAGRLVLAHVVELPKVSADGPLSVTGGVKAEELLGMTENTDPIRGERVIAAIDMPSTDDD 679

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +   +   +  + ++       +   ++ +       E + +++ +   ++  
Sbjct: 680 GQLVPLALGTRNGVVKRWNRESPTTMDSWSVIDLKDDDEVLAAAEARDEDRLVFVSTD-- 737

Query: 808 FGKRTSSYDF-----RISNRSGKGIRATDVSKIN--------EIGAL------------- 841
               +S   F     R   R+  G+    +++            G +             
Sbjct: 738 ----SSLLTFEAKNVRPQGRTAGGMAGIRLAEGCSAAAFAVVPDGKVTWNYEEGENGLFS 793

Query: 842 ---VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVV 892
                V  V  + + +  ++ G     P+       R T GV         + ++
Sbjct: 794 ASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLI 848


>gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
 gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5]
          Length = 826

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 276/884 (31%), Positives = 450/884 (50%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G + +R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVAVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEEILYAEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +       + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVSAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D + +  I   +      +   +K +S      +   +    +  +   + +   
Sbjct: 687 NLKADDALQAAFICNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+GF                              G L +    
Sbjct: 747 LAGA-----------VAEQGFV-----------------------------GDLFSTEME 766

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 ENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 142/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
              V  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVAVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L            S    +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIISDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ + S    GV   +   D+ + + 
Sbjct: 644 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVSAKAAGVKAMNLKADDALQAA 697


>gi|307704630|ref|ZP_07641532.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
 gi|307621832|gb|EFO00867.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK597]
          Length = 814

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 283/874 (32%), Positives = 453/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIVVTEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +  V T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQAVKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---- 678
           +  +       +   +     +      AT+ G ++R +  +F         ++K     
Sbjct: 570 TNFETNEEILYVEVVD--QFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLK 627

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D  D+I++V      +D+ L ++ G  +RF I  +    G  + GV+ ++L + D + S 
Sbjct: 628 DETDQIVAVAPIK-LDDVFLISQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDDVLQSA 685

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I   +      +   +K +S      +   +    +  +   + +              
Sbjct: 686 FICNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGLQVLRELKNKPHRVFLAGA------- 738

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-S 857
               V+E+GF                              G L +   V++NDQ +LV S
Sbjct: 739 ----VAEQGFV-----------------------------GDLFS-TEVDENDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+  + + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTVYEIRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 28/224 (12%)

Query: 683 EILSVETCTQENDILLTTKLGQCVR-----FPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           EI +     +E+  +  TK G   R     F  S +     R             D++I 
Sbjct: 478 EIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR-----------DDDRLIF 526

Query: 738 MAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +  V              + Y               E ++    +      I      + 
Sbjct: 527 VQAVKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVVDQ 586

Query: 794 KLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                     +  G  KR    +F   R      K ++   +   +E   +VAV P+  +
Sbjct: 587 FDDATTYFAATRLGQIKRVERKEFTPWRTYK--SKSVKYAKL--KDETDQIVAVAPIKLD 642

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           D + L+S  G  +R  + E+ +      GV   +  +D+ + S 
Sbjct: 643 D-VFLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSA 685


>gi|257425421|ref|ZP_05601846.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428081|ref|ZP_05604479.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257433472|ref|ZP_05609830.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436313|ref|ZP_05612360.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282903935|ref|ZP_06311823.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905700|ref|ZP_06313555.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908668|ref|ZP_06316489.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282910937|ref|ZP_06318740.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914144|ref|ZP_06321931.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924249|ref|ZP_06331923.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958119|ref|ZP_06375570.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293526724|ref|ZP_06671409.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297591170|ref|ZP_06949808.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|257271878|gb|EEV04016.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274922|gb|EEV06409.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257281565|gb|EEV11702.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284595|gb|EEV14715.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313636|gb|EFB44029.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282322212|gb|EFB52536.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325542|gb|EFB55851.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327486|gb|EFB57778.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330992|gb|EFB60506.1| DNA topoisomerase IV A subunit [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595553|gb|EFC00517.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790268|gb|EFC29085.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920796|gb|EFD97859.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297576056|gb|EFH94772.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194272|gb|EFU24665.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 800

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|139473929|ref|YP_001128645.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes str.
           Manfredo]
 gi|209559259|ref|YP_002285731.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
 gi|134272176|emb|CAM30421.1| topoisomerase IV subunit A [Streptococcus pyogenes str. Manfredo]
 gi|209540460|gb|ACI61036.1| Topoisomerase IV subunit A [Streptococcus pyogenes NZ131]
          Length = 819

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|183603372|ref|ZP_02714487.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
 gi|183571363|gb|EDT91891.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae SP195]
          Length = 826

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 454/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +      AT+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 691 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 751 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA2]
 gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL005PA3]
          Length = 844

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/842 (32%), Positives = 407/842 (48%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPHG+AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+   A  ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EVV     ++D+P+ DLD +M  + GPD PTG  I+G  GI +A
Sbjct: 178 GIAVGMATNIPPHNLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRIIGLDGIADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YCTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F++N V+L   +P    L+ +L+
Sbjct: 298 DLTDLTNGTRLVIEVKNGINPEALLERLYKLTKLEDSFAINAVSLVEGQPRTLGLLEMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R +V +RRTK+ LNKA+DR H++ GL +A+ ++D+V+ IIR S +    R  LM 
Sbjct: 358 VYLDHRLDVTLRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTRLM- 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                    GT  L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 417 -------------------------GTFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I++ ++ L  ++  EL+ V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTPRRTVLLGAAPSVAAASAPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +              +              +        +S G
Sbjct: 512 PCWVLLSATGLLARIDTADGLPSDGDRATHDVI--------ISSARTTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +     L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIR 714
            V+R       +        + L + DE++       E+ ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGKE---SWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D VI         +            + +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPVIFFGAAPRRGSSVVTVAASSPAAAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSIKLTPFDQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756



 Score = 44.4 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 47/164 (28%), Gaps = 20/164 (12%)

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
             A    R+  ++  S      +      T L +   +E          L      +   
Sbjct: 560 TSAGRLVRVHAVELASLPITATAPSVAGGTPLADLVGLEKGERALAVTSLSGAGPSLALG 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           +  G  KR +            G  + +V  +     +V    + D D ++  V+    L
Sbjct: 620 TRNGIVKRVNPEL--------LGKESWEVIGLKNGDEVVGAVEMGDEDLELCFVTQGAAL 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAK-----------DERVVSVE 895
           +  P + +R   R+  GV                     VV+V 
Sbjct: 672 LHFPASAVRPQGRSGGGVAGIKAKDPVIFFGAAPRRGSSVVTVA 715


>gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 451/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + + ++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDYVVLVSQNGYALRFNIEKV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   +      
Sbjct: 688 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPQRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         VSE+GF       DF                             V+
Sbjct: 748 AGA-----------VSEQGF-----VGDF-------------------------FSTEVD 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+   D ++LVS  G  +R  + ++ +      GV   +  +D+ + S
Sbjct: 645 IVAVAPIKL-DYVVLVSQNGYALRFNIEKVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|256390970|ref|YP_003112534.1| DNA topoisomerase IV subunit A [Catenulispora acidiphila DSM 44928]
 gi|256357196|gb|ACU70693.1| DNA topoisomerase (ATP-hydrolyzing) [Catenulispora acidiphila DSM
           44928]
          Length = 820

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 282/858 (32%), Positives = 416/858 (48%), Gaps = 99/858 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                DE+ E+ I  + + DE+ +SY  YA +VI  RA+PD RDGLKPVHRRILF M  M
Sbjct: 6   TTPEPDEDFEERIIDIDVADELSDSYREYAYSVIYSRALPDARDGLKPVHRRILFQMNDM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVK AR+ G+VMGK HPH + AIYD+L RMAQ W++R+ L++G GNFGS+ G 
Sbjct: 66  GLRPDRGYVKSARVVGDVMGKLHPHSDTAIYDSLVRMAQSWAMRIPLVDGHGNFGSLGGD 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE RL  AA  + D + +DTV+F PNYDG  QEP VL + +PN+LVNG  GI
Sbjct: 126 DPPAAMRYTEARLSPAAMIMTDSIDEDTVEFGPNYDGQEQEPQVLPSAFPNLLVNGAAGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNLGEVV     +I +P+  LD LM  + GPD PTG  I+G  GI++AY 
Sbjct: 186 AVGMATNMAPHNLGEVVAAARHLIKHPNATLDDLMRFVPGPDLPTGGQIIGEQGIRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG   +R  + IEK +  RE IVVTE+P+      ++ K+ ELV+ K++  I DL+D 
Sbjct: 246 TGRGVFKMRATAKIEKVTARREGIVVTELPFNTGPEKVISKVKELVQAKKLQGITDLKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           SDR  G ++VIE+K G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 SDRFNGLKLVIEIKAGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EVV RRT++   K  DR H++ GL IA+ ++D V+RIIR S +   A+  LM   
Sbjct: 366 LDHRFEVVRRRTEFRRTKRVDRLHLVEGLLIALVDIDRVIRIIRESDDAAAAKENLMA-- 423

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                    + LS+ Q   IL+  L RLT     ++ +E + L 
Sbjct: 424 ------------------------ALALSDKQATYILDTPLRRLTRFDSLELESERDKLT 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI++   IL S + L  ++  EL ++  +  TPRR+ +VEG L + +   +    + +V
Sbjct: 460 GEIRDLTAILESDTLLRKVVSDELAAISKQFATPRRSVLVEGALPVFEARPLEISDDPVV 519

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R      +    G +G++         V  +   +    V   ++ G + 
Sbjct: 520 VLLSATGLLARTASGATKIGSGGERGKNDA-------VASVVTSTIRGEVGAVTTAGRLI 572

Query: 600 KEKVWRLP--------IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           +  V  LP             A G  +   + L + ER+  +           +  +   
Sbjct: 573 RFPVIDLPVLPESAAKAAPSLAGGAPVSEFVRLEEDERVLCLCSLN-----PESPGLALG 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPI 710
           T  G V+R          R     + L   D +    E  T E +++  T   Q +++  
Sbjct: 628 TVQGVVKRVVPDYPRN--RDTFEVITLKDGDSLAGATELRTGEEELVFITDDAQLLKYSA 685

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +R   G  + G+ GI+L+    VI    V          +        +         
Sbjct: 686 SLVRP-QGCPAGGMAGITLSDDASVIFFGAVDPGHDGLIVSMAGSDDALVEAATTM---- 740

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K T    +    R+  G+R  
Sbjct: 741 ---------------------------------------KATPYALYPTKGRATGGVRCQ 761

Query: 831 DVSKINEIGALVAVFPVN 848
              K      LVA + VN
Sbjct: 762 RFLKGEH--RLVAAWAVN 777



 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 29/239 (12%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG----------VRGISL 729
             D + SV T T   ++   T  G+ +RFP+  + V     +               + L
Sbjct: 546 KNDAVASVVTSTIRGEVGAVTTAGRLIRFPVIDLPVLPESAAKAAPSLAGGAPVSEFVRL 605

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + ++V+ +  +       +     +  +    + +  D           +++   S   
Sbjct: 606 EEDERVLCLCSLNP-----ESPGLALGTVQGVVKRVVPDYPRNRDTFEVITLKDGDSLAG 660

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             EL+  E+ ++ +++     + S+   R       G+    +S      +++    V+ 
Sbjct: 661 ATELRTGEEELVFITDDAQLLKYSASLVRPQGCPAGGMAGITLSD---DASVIFFGAVDP 717

Query: 850 NDQIILVSDKG----------TLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERI 897
               ++VS  G          T+   P        RAT GV      K E R+V+   +
Sbjct: 718 GHDGLIVSMAGSDDALVEAATTMKATPYALYPTKGRATGGVRCQRFLKGEHRLVAAWAV 776



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 25/196 (12%), Positives = 59/196 (30%), Gaps = 18/196 (9%)

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMA---------IVLHADADYDERICYMKHMSAQRRL 764
           R  +G   +G  G    K D V S+           V  A       +  +  +      
Sbjct: 530 RTASGATKIGSGGER-GKNDAVASVVTSTIRGEVGAVTTAGRLIRFPVIDLPVLPESAAK 588

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
            +        +     +E +        L  +   +   + +G  KR    D+   NR  
Sbjct: 589 AAPSLAGGAPVSEFVRLEEDERVLCLCSLNPESPGLALGTVQGVVKRV-VPDYPR-NRDT 646

Query: 825 KGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             +         +  +L     +    ++++ ++D   L++   + +R       G+   
Sbjct: 647 FEVITLK-----DGDSLAGATELRTGEEELVFITDDAQLLKYSASLVRPQGCPAGGMAGI 701

Query: 884 STAKDERVVSVERIRE 899
           + + D  V+    +  
Sbjct: 702 TLSDDASVIFFGAVDP 717


>gi|15924345|ref|NP_371879.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156979674|ref|YP_001441933.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253317050|ref|ZP_04840263.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255006143|ref|ZP_05144744.2| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|258413399|ref|ZP_05681675.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|258447474|ref|ZP_05695618.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|258449315|ref|ZP_05697418.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|258454695|ref|ZP_05702659.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|269202978|ref|YP_003282247.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282928914|ref|ZP_06336503.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|20178000|sp|Q931S2|PARC_STAAM RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14247126|dbj|BAB57517.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156721809|dbj|BAF78226.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839963|gb|EEV64431.1| topoisomerase IV subunit A [Staphylococcus aureus A9763]
 gi|257853665|gb|EEV76624.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6300]
 gi|257857303|gb|EEV80201.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus A6224]
 gi|257863078|gb|EEV85842.1| topoisomerase IV subunit A [Staphylococcus aureus A5937]
 gi|262075268|gb|ACY11241.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589423|gb|EFB94513.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A10102]
 gi|285817033|gb|ADC37520.1| Topoisomerase IV subunit A [Staphylococcus aureus 04-02981]
          Length = 800

 Score =  629 bits (1621), Expect = e-178,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|73916844|gb|AAZ93290.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 283/882 (32%), Positives = 454/882 (51%), Gaps = 81/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 241 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++
Sbjct: 301 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                  
Sbjct: 361 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL------------------ 402

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+    
Sbjct: 403 --------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR   
Sbjct: 455 TMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          +  RD+D +  +    T   +L F+SLG V    +  L     + 
Sbjct: 515 RSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKD 569

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   +     E    I+     +   +      AT+ G ++R +  +F        
Sbjct: 570 IGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRS 627

Query: 674 IAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L 
Sbjct: 628 KSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLK 686

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D + S  I   +      +   +K +S +  L +   +    +  +   + +      
Sbjct: 687 EDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG 746

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                       V+E+GF       DF                             V+ N
Sbjct: 747 A-----------VAEQGF-----VGDF-------------------------FSTEVDVN 765

Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           DQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 807



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 232 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 291

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 292 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 351

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 352 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 408

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 409 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 460

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 461 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 515 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 563

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 564 -----DIRWKD----------------------------------IGEHLSQTITNFETN 584

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 585 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 641

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 642 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 693


>gi|73916820|gb|AAZ93278.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 820

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/882 (31%), Positives = 453/882 (51%), Gaps = 81/882 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A
Sbjct: 1   IQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL
Sbjct: 61  KSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARL 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 SEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + 
Sbjct: 181 AEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTE 240

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK
Sbjct: 241 IEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELK 300

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++
Sbjct: 301 KDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRF 360

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
              KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                  
Sbjct: 361 DKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL------------------ 402

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+    
Sbjct: 403 --------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDER 454

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR   
Sbjct: 455 TMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          +  RD+D +  +    T   +L F+SLG V    +  L     + 
Sbjct: 515 RSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKD 569

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L   +     E    I+     +   +       T+ G ++R +  +F        
Sbjct: 570 IGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRS 627

Query: 674 IAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
            ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L 
Sbjct: 628 KSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLK 686

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D + S  I   +      +   +K +S +  L +   +    +  +   + +      
Sbjct: 687 EDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG 746

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                       V+E+GF       DF                             V+ N
Sbjct: 747 A-----------VAEQGF-----VGDF-------------------------FSTEVDVN 765

Query: 851 DQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           DQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 DQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 807



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 232 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 291

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 292 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 351

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 352 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 408

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 409 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 460

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 461 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 514

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 515 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 563

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 564 -----DIRWKD----------------------------------IGEHLSQTITNFETN 584

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 585 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 641

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 642 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 693


>gi|270290231|ref|ZP_06196456.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304384955|ref|ZP_07367301.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
 gi|270281012|gb|EFA26845.1| DNA topoisomerase IV, A subunit [Pediococcus acidilactici 7_4]
 gi|304329149|gb|EFL96369.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pediococcus acidilactici
           DSM 20284]
          Length = 817

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/887 (31%), Positives = 451/887 (50%), Gaps = 100/887 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + +  I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G   +K 
Sbjct: 3   DNQSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKA 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+++IY+AL RM+Q+W LR+ LIE  GN GS+D DPPAA RY
Sbjct: 63  FRKSAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKLRVPLIEMHGNNGSIDNDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +L D+ K+TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 123 TEARLSQAAEEMLQDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GEV+D  +  I +PD  L+ LME ++GPDFPTG ++ GR G+K AY TGRG +V+
Sbjct: 183 PPHNIGEVIDAVLYTIKHPDPSLEKLMEFVKGPDFPTGGIVQGRDGLKQAYKTGRGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G ++QI +TEIPY+VNKA +++KI E+   K+I  IA++RDESDR+G  +
Sbjct: 243 RSRTAIEQLRGSKQQIRITEIPYEVNKAQLVKKIDEIRVMKKIDGIAEVRDESDREGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+   A  +LN L + T LQ  ++ NMVA+N  +PER  L  I++A+V F++EV+ 
Sbjct: 303 AIELKKDVDAQGVLNYLLKNTDLQVSYNFNMVAINKLRPERMGLKPIIQAYVDFQKEVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ L KA  R H++ GL  A++ LD+V++ IR S + + A+  L++R          
Sbjct: 363 KRTQFNLQKAEARLHIVDGLIKALSILDQVIKTIRGSKDKKDAKHNLVER---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  +I+ L+L RLT     +++ E   L   I E   I
Sbjct: 413 ----------------FDFSEKQAESIVSLQLYRLTNTDVTELKTEAQQLNESIAEFNQI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+  ++L  ++  EL  VK +  TPR + I + +    ++    +  E ++V VS  GY+
Sbjct: 457 LNDPAKLSRVLSAELRKVKKQYATPRLSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y+A            ++D D       +ST   +L F++ G +    V+ +  
Sbjct: 517 KRSSLRSYKASADED------GLKDGDQPVFKHELSTLDHLLMFTNKGNLIYRPVYEITE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   + L   E I         +   N    + AT  G +++  L D    
Sbjct: 571 ARWKDTGEHVSQTIGLADDEIILKAYDVKNFKQPIN---FLIATDDGYIKQTALQDLKPG 627

Query: 669 NRSGKIAMKL----DSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNS 721
               K A+          ++++V     +     ILL ++ G  +R+ +  I    G  +
Sbjct: 628 RTYRKKAITYAKLKKQGAKVVNVVQVDPKTAPATILLASEHGYGLRYDLVEI-PTVGPRA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ + L   DQV +  +V   D                                    
Sbjct: 687 AGVKSMDLR-DDQVANFVLVNDED------------------------------------ 709

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++ +G  KR    +  +++R+ +G++     K      +
Sbjct: 710 -----------------QIGLITNRGSFKRMKVSEISVTSRARRGVQILRELKKEPH-RV 751

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           V +  VN++    +++ +G +  +   E  +  R + G  +     +
Sbjct: 752 VDIAVVNEHQAFEVLTSRGLVHDILPMEHPLNERYSNGSFVIDIDSE 798



 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 105/285 (36%), Gaps = 17/285 (5%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L++ +     +      +      +V  ++ G ++R+ L  +            L   D+
Sbjct: 483 LSEIQDEIEEIKIDRTVTVPEEQVMVLVSQAGYLKRSSLRSYKASADEDG----LKDGDQ 538

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIV 741
            +     +  + +L+ T  G  +  P+  I     +++     + I LA  + ++    V
Sbjct: 539 PVFKHELSTLDHLLMFTNKGNLIYRPVYEITEARWKDTGEHVSQTIGLADDEIILKAYDV 598

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE-----GNISEERCQELKLK 796
            +     +  I        Q  L           K  +  +       +      + K  
Sbjct: 599 KNFKQPINFLIATDDGYIKQTALQDLKPGRTYRKKAITYAKLKKQGAKVVNVVQVDPKTA 658

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              IL  SE G+G R    +         G+++ D+        +     VND DQI L+
Sbjct: 659 PATILLASEHGYGLRYDLVEIPTVGPRAAGVKSMDL----RDDQVANFVLVNDEDQIGLI 714

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--RVVSVERIRE 899
           +++G+  R+ V+EI + SRA +GV I    K E  RVV +  + E
Sbjct: 715 TNRGSFKRMKVSEISVTSRARRGVQILRELKKEPHRVVDIAVVNE 759


>gi|15672966|ref|NP_267140.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491485|ref|YP_003353465.1| topoisomerase IV subunit A [Lactococcus lactis subsp. lactis KF147]
 gi|12723927|gb|AAK05082.1|AE006332_11 topoisomerase IV subunit B [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375203|gb|ADA64716.1| Topoisomerase IV, subunit A [Lactococcus lactis subsp. lactis
           KF147]
          Length = 824

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/887 (31%), Positives = 457/887 (51%), Gaps = 73/887 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLADIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+V+R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIVKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +  +E E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +          +  RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASS-----ALEEIGKRDDDELLYYANAKTTQHLLLFTNLGNVIYRPIHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
           +  G+ L   LS    +     +   ++ +  N   ++  T++G ++   R   S +   
Sbjct: 571 KDIGEHLSQSLSNFSADEKVIFVQIVDEFAGEN---LLVVTRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + T  Q  D++L ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGEDDEIVLITPVQFADLMLISENGYALRFNLDDVPVLGARAA-GVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD++ S   V         +  ++K +       +        +        +    
Sbjct: 687 LKNGDKIKSAFFVNSNSWYLLTQRAFIKRVKTDDIPATSRANRGLQVLRTLKTNNHTVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +   L  +E+          F  +       +A    +              
Sbjct: 747 AGLINSTADLSAL--TEE-------LDLFSQA-------KAPATKET------------- 777

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 778 -DEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|304381068|ref|ZP_07363722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|304340377|gb|EFM06317.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314033|gb|AEB88446.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 800

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|320546628|ref|ZP_08040940.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
 gi|320448683|gb|EFW89414.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus equinus
           ATCC 9812]
          Length = 819

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 268/770 (34%), Positives = 410/770 (53%), Gaps = 40/770 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SNVQNMSLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLHDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  LD LME + GPDFPTGA+I G+ GI+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYLIDHPNAKLDKLMEFLPGPDFPTGAIIQGKDGIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIVVTEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TDIETLRGGKKQIVVTEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    ILN L +YT LQ  ++ NMVA++ Y P +  +I +L ++VA R+E++V R+
Sbjct: 302 LKKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSYVAHRKEIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LD+V+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDDVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RL+      + NE   L   I     I+  
Sbjct: 406 ----------KISYDFSEEQAEAIVTLQLYRLSNTDIVALENEEAELRERITMFKAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR T +       +++    IV ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANPRLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNAS-----TVEEIGKRDDDELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         ++   +       ATK G ++R +  +       
Sbjct: 571 KDIGEHLSQTITNFATDESVLYAEIVDE---FGPQTYFAATKLGQIKRFERKEISPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              A+   KL + D+++   +    +D+++ T  G  + F I  +    G  + GV+ I+
Sbjct: 628 KSKAVKYAKLKNDDDMIVTISPIALDDVMVVTHNGYALHFNIDEV-PVVGAKAAGVKSIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           L   D V+S  I          +   +K MS      +        +  +
Sbjct: 687 LKDDDFVVSTFIANTESFFILTQRGSLKRMSTDLIPATNRANRGLQVLRE 736



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/470 (11%), Positives = 130/470 (27%), Gaps = 30/470 (6%)

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNEL 477
             +   ++  I+L  D+      +  +  +++Q      ++ +       +G   +    
Sbjct: 290 ESDRDGLRIAIELKKDADEQTILNYLLKYTDLQVNYNFNMVAIDNYTPRQVGIIPMLTSY 349

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
            +   EI               +   E L     +       I          D      
Sbjct: 350 VAHRKEIIVARSKFDKEKAEKRLHIVEGLIRVISILDD---VIALIRASENKADAKENLK 406

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +    S       V L +YR                 + +T                   
Sbjct: 407 ISYDFSEEQAEAIVTLQLYRLSNTDIVALENEEAELRERITMF--------KAIIGDERT 458

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +Y      L     +           L + +     +              V  TK G +
Sbjct: 459 MYNVMKRELREVKKKFANP------RLTELQAEAETIEIDVASLIVEEDTFVSVTKGGYI 512

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R     F          +     DE++ V        +L+ T LG  +  P+  +    
Sbjct: 513 KRTSPRSFNASTVEE---IGKRDDDELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIR 569

Query: 718 GRNSVGV--RGI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            ++      + I + A  + V+   IV             +  +    R          S
Sbjct: 570 WKDIGEHLSQTITNFATDESVLYAEIVDEFGPQTYFAATKLGQIKRFERKEISPWRTYKS 629

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                +   N  +       +    ++ V+  G+    +  +  +      G+++ ++  
Sbjct: 630 KAVKYAKLKNDDDMIVTISPIALDDVMVVTHNGYALHFNIDEVPVVGAKAAGVKSINLKD 689

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            +    +V+ F  N  +   +++ +G+L R+  + I   +RA +G+ +  
Sbjct: 690 DDF---VVSTFIAN-TESFFILTQRGSLKRMSTDLIPATNRANRGLQVLR 735



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 22/251 (8%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           T +  ++R        F     +   A       EI       +E+  +  TK G   R 
Sbjct: 458 TMYNVMKRELREVKKKFANPRLTELQAEA--ETIEIDVASLIVEEDTFVSVTKGGYIKR- 514

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             ++ R F   N+  V  I     D++I ++                        L    
Sbjct: 515 --TSPRSF---NASTVEEIGKRDDDELIFVSQAKTTQHLLIFTNLGNVIYRPVHELTDIR 569

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKE---QFILTVSEKGFGKRTSSYDF---RISNR 822
            ++I    + +       E       + E   Q     ++ G  KR    +    R    
Sbjct: 570 WKDIGEHLSQTITNFATDESVLYAEIVDEFGPQTYFAATKLGQIKRFERKEISPWRTYK- 628

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             K ++   +   N+   +V + P+  +D +++V+  G  +   ++E+ +      GV  
Sbjct: 629 -SKAVKYAKL--KNDDDMIVTISPIALDD-VMVVTHNGYALHFNIDEVPVVGAKAAGVKS 684

Query: 883 FSTAKDERVVS 893
            +   D+ VVS
Sbjct: 685 INLKDDDFVVS 695


>gi|221141852|ref|ZP_03566345.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|302751186|gb|ADL65363.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus str. JKD6008]
          Length = 800

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A    H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKHMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKKNDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V    +   L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVK---KNDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
 gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300]
          Length = 826

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 275/884 (31%), Positives = 451/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  T R + + +   +++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATSRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +           +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQSITNFETNEEILYAEVVD--QFDDATTYFAATRLGQIKRVERKEFSPWRTY 628

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ +
Sbjct: 629 KSKSVKYAKLKDETDQIVAVAPIR-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAM 686

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D + +  I   +      +   +K +S +    +   +    +  +   + +   
Sbjct: 687 NLKADDALQAAFICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVF 746

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                          V+E+G                               G L +    
Sbjct: 747 LAGA-----------VAEQGLV-----------------------------GDLFSTEME 766

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++  +++ S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 ENDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 142/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E    ++              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATS------RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQSITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 588 EEILYAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 643

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 644 QIVAVAPIRLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAA 697


>gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A]
 gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A]
          Length = 857

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 293/839 (34%), Positives = 458/839 (54%), Gaps = 60/839 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D+  E+ I  V + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MSKIDKKLDKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+ +NK Y K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++  GN GS+
Sbjct: 61  GQMGLAFNKSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A FLL D+ K TV+F PN+D   QEP VL AR+PN+LVNG  
Sbjct: 121 DGDSAAAMRYTEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAM 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GI+ G AT IP HNL EV+D  +A+IDNP+I  D +++ I+GPDFPTG ++ G+ GIK A
Sbjct: 181 GISAGYATKIPPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGGIVQGKAGIKEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TG G I+IR   ++E+ S  +++IV+TEIPY+VNKA ++ +I  L     I DI ++R
Sbjct: 241 LTTGSGKIIIRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIR 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+D++G R+ I+LK+GA A  I N L + + LQ  ++ NMVA+  ++P       +LK 
Sbjct: 301 DETDQEGLRIAIDLKKGADAQFIQNYLLKSSDLQVNYNYNMVAILKHRPVLSGAFELLKV 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++EVV  R+ Y L +A  R H++ GL    + + EV+  IR S N   ++  + +R
Sbjct: 361 YLEHQKEVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKR 420

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE+Q  AI+ L+L RL+      + +E ++L
Sbjct: 421 --------------------------FGFSELQAEAIVMLQLYRLSTTDIQALLDEKDTL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDM 538
             EI     ILS+   LL  IK EL  V+  L +PRRT +   +    ++++D I  E  
Sbjct: 455 YKEITRLEQILSNERILLKTIKSELQEVQTLLPSPRRTELEAEIETIKIDEKDLISDEQT 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V ++  GYVKR  L    A +  G       +++ D +     ++T  ++L F++LG  
Sbjct: 515 YVAITKDGYVKRASLRSVVASKEVG-------LKENDAMLYEEELNTLDTLLLFTNLGQY 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  + NI+  ++GE I  ++   +      +  ++  TK G ++
Sbjct: 568 IYLPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSDFSI---DQKILLTTKQGQMK 624

Query: 659 RNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L+DF     +    AMKL   DE++SV+   Q ++I+  +K G  +RF    +    
Sbjct: 625 QVNLADFEVSRYNRPLRAMKLSKDDELVSVD-YNQLDNIVAISKHGYVLRFDTEEL-PVY 682

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADY----------DERICYMKHMSAQRRLISG 767
           G  + GV+ ++LA+GD+V        +D  Y          D  +   K+   +R +I  
Sbjct: 683 GLTAGGVKSMALAEGDEVAVAFYAKESDDFYFLTSRGHIIKDTVLELPKYARNRRGIILV 742

Query: 768 DTEEITSLKNDSSVEGNISEERCQE----LKLKEQFILTVS-----EKGFGKRTSSYDF 817
           D  + +     S+   + ++ +       L  KE  I TVS        +GK+     +
Sbjct: 743 DRIKTSPHFIISASRVSKTQIKEDVKVRILSTKEALITTVSDLKYVANKYGKKMVEDGY 801



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 119/279 (42%), Gaps = 18/279 (6%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
            +   E +   +    V  TK G V+R  L   +         + L   D +L  E    
Sbjct: 500 TIKIDEKDLISDEQTYVAITKDGYVKRASLRSVVASKE-----VGLKENDAMLYEEELNT 554

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYD 749
            + +LL T LGQ +  P+  I     R+ +GV   ++   +KG+ +I   ++  +D   D
Sbjct: 555 LDTLLLFTNLGQYIYLPVYKIEEQKWRD-LGVYINNIVPTSKGETII--RVLKVSDFSID 611

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           ++I         +++   D E     +   +++ +  +E       +   I+ +S+ G+ 
Sbjct: 612 QKILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSVDYNQLDNIVAISKHGYV 671

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            R  + +  +   +  G+++  +++      +   F   ++D    ++ +G +I+  V E
Sbjct: 672 LRFDTEELPVYGLTAGGVKSMALAEG---DEVAVAFYAKESDDFYFLTSRGHIIKDTVLE 728

Query: 870 IRIASRATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
           +   +R  +G+++     T+    ++S  R+ +++I ++
Sbjct: 729 LPKYARNRRGIILVDRIKTSPH-FIISASRVSKTQIKED 766


>gi|116494895|ref|YP_806629.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
 gi|116105045|gb|ABJ70187.1| DNA topoisomerase IV subunit A [Lactobacillus casei ATCC 334]
          Length = 814

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 291/901 (32%), Positives = 447/901 (49%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+   + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVIAAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADN-----GLKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKV---LAVFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 671 --SGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I++    T +   D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTTAKVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPAQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|283470570|emb|CAQ49781.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 800

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 275/887 (31%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        I+    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVIINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  I     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVIINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|312829751|emb|CBX34593.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
          Length = 800

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|313123650|ref|YP_004033909.1| DNA topoisomerase iv subunit a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280213|gb|ADQ60932.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 827

 Score =  628 bits (1620), Expect = e-177,   Method: Composition-based stats.
 Identities = 272/891 (30%), Positives = 434/891 (48%), Gaps = 96/891 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDTSLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTSKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +      ++++  I  E + V +S  GY
Sbjct: 456 ILADPKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G         +             +  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNGLPETDQVVYEGSLSTLTN-----LYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    NL  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALD--DPNLAFLLATNDGFIKQVALADLQP 628

Query: 668 INR---SGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +        +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIDEVPQVGARAA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 689 -GVKSINLKEDDYVVACLVTDPQYEDLLKVGL---------------------------- 719

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                V+++G  K+        ++R+ +G+      K      +
Sbjct: 720 ---------------------VTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPH-RI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           VA+     N ++IL++      +IR   ++  +  R + G  +     D  
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTDGE 806



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 82/215 (38%), Gaps = 18/215 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY 754
           L ++ G   R   S++R F      G  G  L + DQV+   S++ + +     +     
Sbjct: 509 LISRDGYIKR---SSMRSFQS-TEAGDNG--LPETDQVVYEGSLSTLTNLYLFTNHGNLI 562

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGKRTS 813
            + +         D  +  S +   + + +I      E L       L  +  GF K+ +
Sbjct: 563 YRPVHELVESKWKDVGQHLSQELGLAADESIIRVFALEALDDPNLAFLLATNDGFIKQVA 622

Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
             D + +    +R+   I A  +   +     V +   ++  +I L +++   ++  ++E
Sbjct: 623 LADLQPTRTYKSRA---IMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIDE 679

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +        GV   +  +D+ VV+   + + +  D
Sbjct: 680 VPQVGARAAGVKSINLKEDDYVVA-CLVTDPQYED 713


>gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631]
 gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631]
          Length = 738

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 293/812 (36%), Positives = 430/812 (52%), Gaps = 88/812 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    I +E++++YL YA++VI+GRA+PD+RDGLKPV RRIL+ M +MG+  +K +VKC
Sbjct: 3   EVLIRDIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKC 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G V+G YHPHG+A +Y+AL RMAQD+S+R  LI+GQGNFGS+DGD PAA RYTECR
Sbjct: 63  ARVVGHVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  +L+D+ K+TVDF+PN+D S QEPVVL A+ PN+L+NG  GIAVGM TNIP HN
Sbjct: 123 LTEIAEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           + EV DG +A I NP+I ++ LM  I+GPDFPTG VI+GR GI  AY TG+G I++RG  
Sbjct: 183 IREVCDGIIAYIKNPNISIEELMNFIKGPDFPTGGVIVGRDGIIEAYRTGKGKIILRGKV 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+       I++ EIPY VNKA ++EKIA+L+++ +++    +RDESDR+G RVVIEL
Sbjct: 243 DVEEDK-----IIIREIPYMVNKAKLVEKIADLIKKDKLLAKT-VRDESDREGIRVVIEL 296

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K        L +LY +T L+  F+V M+AL   +P+   L  ++  +V  R EVV R+ +
Sbjct: 297 KED--PYSALKKLYDHTPLKVTFNVVMLALVNNEPKLLNLKELIAHYVNHRREVVRRKAE 354

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L KA +R H++ GL  A+  LDEV+ +I+ S + + A+  LM+               
Sbjct: 355 YELKKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMK--------------- 399

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                       + ++E Q  AIL+LRL  LT L  + +  E N L   I E   IL+  
Sbjct: 400 -----------LLRITEKQAEAILQLRLQMLTRLEYESLMKEFNELKGRIDELKSILADP 448

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
            R+  II +EL  VK +    RRT I++  +  E       E+  V V+  G +KR    
Sbjct: 449 KRVDEIIVEELREVKRKFGDNRRTEIIDKEILKEV-----VEEFGVAVTLDGQIKRF--- 500

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                         +          L    ++  +L FSS    Y      +P       
Sbjct: 501 -------------EIGKALRSNPKILLRAMSNLDILLFSSD-KAYSIHARDIP------- 539

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                  L      +  +         +  +  VV  +K GN+++ +L +F    R+G I
Sbjct: 540 -------LDFTPLSKFISAEKVETGVVAKGD--VVILSKDGNIKKVRLEEFANAKRAGII 590

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
           A       E +      ++ D+++ TK G  VRF  S I    GR++ GV+ I+L +GD+
Sbjct: 591 AG------ENIGFARLYEDGDVIIATKNGYIVRFRSSEI-PEYGRSAKGVKAITLREGDE 643

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +  M+I          R  Y K +      ++                  I         
Sbjct: 644 IAWMSIGKGDYVLILTRDGYAKKVPIDEFRLTNRGAMGVRGVRGEIAVAEIV-------- 695

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
             E+     + +G   R +       +R  KG
Sbjct: 696 -SEEEYYAYTSEGNAVRINVKRIPKGDRYKKG 726



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 21/190 (11%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           D+++ +K G      I  +R+    N+    GI       +    I      +  + I  
Sbjct: 563 DVVILSKDG-----NIKKVRLEEFANAKR-AGI-------IAGENIGFARLYEDGDVIIA 609

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            K+    R   S   E   S K   ++     +E       K  ++L ++  G+ K+   
Sbjct: 610 TKNGYIVRFRSSEIPEYGRSAKGVKAITLREGDEIAWMSIGKGDYVLILTRDGYAKKVPI 669

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            +FR++NR   G+R          G +     V++ ++    + +G  +R+ V  I    
Sbjct: 670 DEFRLTNRGAMGVRGVR-------GEIAVAEIVSE-EEYYAYTSEGNAVRINVKRIPKGD 721

Query: 875 RATKGVVIFS 884
           R  KG  I  
Sbjct: 722 RYKKGKKIVD 731



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
           IS E+ +   + +  ++ +S+ G  K+    +F  + R+  GI A         G  +  
Sbjct: 549 ISAEKVETGVVAKGDVVILSKDGNIKKVRLEEFANAKRA--GIIA---------GENIGF 597

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             + ++  +I+ +  G ++R   +EI    R+ KGV   +  + + +  + 
Sbjct: 598 ARLYEDGDVIIATKNGYIVRFRSSEIPEYGRSAKGVKAITLREGDEIAWMS 648


>gi|87160035|ref|YP_493948.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|294848359|ref|ZP_06789106.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
 gi|87126009|gb|ABD20523.1| DNA topoisomerase IV, subunit A [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|294825159|gb|EFG41581.1| DNA topoisomerase IV [Staphylococcus aureus A9754]
          Length = 800

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|269794918|ref|YP_003314373.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
 gi|269097103|gb|ACZ21539.1| DNA topoisomerase IV subunit A [Sanguibacter keddieii DSM 10542]
          Length = 824

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 270/849 (31%), Positives = 397/849 (46%), Gaps = 93/849 (10%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
             +   +  + I  + +  EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M  MG
Sbjct: 9   STTDLGDFTEKIVDIDVAQEMEGSFLEYAYSVIYARALPDARDGLKPVQRRILFQMSDMG 68

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++ +VK AR+ GEVMGK HPHG+ AIYDAL RMAQ +SLRL +++G GNFGS+D D 
Sbjct: 69  LRPDRGHVKSARVVGEVMGKLHPHGDTAIYDALVRMAQPFSLRLPMVDGHGNFGSLD-DG 127

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           PAA RYTE RL  AA  +   L +D VDF PNYD    +P VL A  PN+LVNG  GIAV
Sbjct: 128 PAAPRYTEARLAPAALVMTTGLDEDVVDFVPNYDNKLVQPEVLPAAIPNLLVNGASGIAV 187

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATN+  HNL EVV     ++ NP   L+ LM  + GPD PTG  I+G  GI++AY TG
Sbjct: 188 GMATNLAPHNLIEVVAAARFLVANPKASLEDLMRFVPGPDLPTGGKIVGLEGIRDAYRTG 247

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS   R    +E  +  R+ +VVTE+PY V    ++EKI E V+ K++  I  + D +D
Sbjct: 248 RGSFKTRATVRVENVTPKRKGLVVTELPYLVGPEKVIEKIKEGVQAKKLAGITAVTDLTD 307

Query: 305 R-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           R  G R+VIE+K G + + +L QLYRYT ++  F +N VAL   +P    L  +L  +V 
Sbjct: 308 RSHGLRLVIEIKTGFNPEAVLEQLYRYTPMEDSFGMNNVALVDGQPRTLGLREMLSVWVD 367

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R +VV RR+++ L K  DR H++ GL +A+ ++DEV+++IR S + +TAR  L +    
Sbjct: 368 HRIDVVRRRSQFRLTKRLDRLHLVEGLLLAIVDIDEVIQVIRSSDDADTARGRLRE---- 423

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q+  ILELRL RLT   R ++  E ++L  E
Sbjct: 424 ----------------------VFDLSEAQSEYILELRLRRLTKFSRIELEKEQSALVEE 461

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--------- 534
           I++   IL   + L  ++  E+  V     TPRRT +++                     
Sbjct: 462 IEQLRAILGDDALLRRVVSDEMAEVAKVYGTPRRTILLDSAGGGVTGLPGPSSPRGAPVS 521

Query: 535 ----REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                    V +S  G + R        +         +            + S    V 
Sbjct: 522 LEIEDTPCWVLLSSTGLLARTSDETEPVRDDHRHAHDVLASG--------VLASVRAEVG 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE-RITTIMPFPEDESSWNNLYVV 649
             +S G V +  V  LP   P     +L   + + +                + +   + 
Sbjct: 574 ALTSAGRVVRLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAEDAPTLA 633

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T  G V+R    D    +    +A  L   D ++     T +++++  +     + FP
Sbjct: 634 LGTAAGVVKRVAQGDVPNRDSWEVVA--LKPGDAVVGAVPVTDDDELVFVSSEASLLHFP 691

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            +A+R   GR + G+ GI LA   +V+    V    ++    +       A         
Sbjct: 692 ATAVRP-QGRTAGGMAGIKLAGDQRVVFFGAVRAGQSEECAVVTVAGASDALPG------ 744

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                             ++ G  K T+   +    R+  G+RA
Sbjct: 745 ----------------------------------TQTGSVKTTAFAAYPGKGRATGGVRA 770

Query: 830 TDVSKINEI 838
               K  + 
Sbjct: 771 HRFLKGEDT 779



 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 7/169 (4%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   +     A    R+  +   +      +        +    ++E          L  
Sbjct: 568 VRAEVGALTSAGRVVRLSVLDLPALPPTQGAPSLSGGVPVAEVCALEPGERLVTVVSLAE 627

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
               +   +  G  KR +  D    NR    + A          A+V   PV D+D+++ 
Sbjct: 628 DAPTLALGTAAGVVKRVAQGDVP--NRDSWEVVALK-----PGDAVVGAVPVTDDDELVF 680

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           VS + +L+  P   +R   R   G+     A D+RVV    +R  +  +
Sbjct: 681 VSSEASLLHFPATAVRPQGRTAGGMAGIKLAGDQRVVFFGAVRAGQSEE 729


>gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/883 (31%), Positives = 451/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|71910525|ref|YP_282075.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
 gi|161485747|ref|NP_664429.2| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS315]
 gi|73921619|sp|Q8K7U6|PARC_STRP3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|71853307|gb|AAZ51330.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS5005]
          Length = 819

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|312438245|gb|ADQ77316.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 800

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  + S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTIYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|282919066|ref|ZP_06326801.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282316876|gb|EFB47250.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus C427]
          Length = 800

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYKLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|322517178|ref|ZP_08070061.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
 gi|322124237|gb|EFX95753.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus
           vestibularis ATCC 49124]
          Length = 818

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/892 (31%), Positives = 442/892 (49%), Gaps = 82/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSC 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE + L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEDDLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASM-----IDEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   +     + ATK G ++R +  +F      
Sbjct: 571 KDLGEHLSQTITNFSKDEEVLYAEILDD---FETGTYLAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +   T  Q +DI++ T+ G  +RF    +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKDDSDFIVTVTPIQLDDIMIITQKGYALRFNADEV-PVVGAKAAGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V ++ +          +   +K ++      +        +  +   + +    
Sbjct: 687 LKDDDTVQAVFVANTQSFYLLTQRASLKRVATADIPQAKRAGRGLQVLRELKTKPHRVFT 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                          +E                               EI  L    PV 
Sbjct: 747 AGP----------VFTEN---------------------------AGGEIDLL--ATPVE 767

Query: 849 DNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +  Q +LV+   G    V ++ + ++ R + G  I   A  E  V   +I E
Sbjct: 768 ETPQTLLVTATTGETAEVDLSLLNLSDRTSNGSFIEGLADKE--VFSAKIIE 817


>gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 451/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHGN++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|309812888|ref|ZP_07706620.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
 gi|308433166|gb|EFP57066.1| DNA gyrase/topoisomerase IV, A subunit [Dermacoccus sp. Ellin185]
          Length = 866

 Score =  628 bits (1619), Expect = e-177,   Method: Composition-based stats.
 Identities = 288/848 (33%), Positives = 409/848 (48%), Gaps = 106/848 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+     DE+  + I  + + DEM+ ++L Y+ +VI  RA+PD RDGLKPV RRILF M 
Sbjct: 4   TKKPEMPDEDIVENIIDIDVEDEMRAAFLEYSYSVIYSRALPDARDGLKPVQRRILFSMD 63

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  NK +VK +R+ GEVMGKYHPHG++AIYD L RMAQD+++RL LI+G GNFGS+D
Sbjct: 64  ELGLTPNKNHVKSSRVVGEVMGKYHPHGDSAIYDTLVRMAQDFTMRLPLIDGHGNFGSLD 123

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
              PAA RYTE RL  A+  L+  L ++TVDF PNYD S Q+P VL A +PN+LVNG  G
Sbjct: 124 -QGPAASRYTEARLAPASLTLVAGLDENTVDFVPNYDDSLQQPSVLPAAFPNLLVNGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNLGEVV   V +I NPD  LD LM  + GPD P G  I+G  GI++AY
Sbjct: 183 IAVGMATNMAPHNLGEVVQAAVHLIKNPDCSLDDLMRFVPGPDLPMGGRIIGLDGIRDAY 242

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG+   R  + IE  +  R+ IVVTE+PY V    +++K+ +LV +K++  ++D++D
Sbjct: 243 LTGRGTFRTRATATIENVTPRRKGIVVTELPYLVGPEKVIDKMKDLVGQKKLHGVSDVKD 302

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            SD   G R+VIELK G + + +L QLY+ T ++  F +N VAL   +P    L  +L+ 
Sbjct: 303 LSDRHHGLRLVIELKNGFNPEAVLEQLYKLTPMEESFGINNVALVDGQPRTLGLKELLRV 362

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +  FR +VV RRT + L K  DR H++ GL IA+ ++DEV++IIR S +  TAR  LMQ 
Sbjct: 363 YTDFRIDVVRRRTTHRLGKKEDRLHLVDGLLIAILDIDEVIQIIRSSDDSATARARLMQ- 421

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE Q   IL+L+L RLT   R ++  E + L
Sbjct: 422 -------------------------VFDLSEAQATYILDLQLRRLTKFSRLELEKEADEL 456

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM---------EDED 531
             EI++   IL+    L  ++  ELL+V  E  TPRRT ++EG                 
Sbjct: 457 RAEIEKLRAILADVKLLHKVVCDELLAVAKEFGTPRRTVLLEGNGTQAVAKTASKSSMPL 516

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  +   V +S  G + R   +   +   G         R  D V      S       
Sbjct: 517 EIPDDPCWVLLSSTGLIARTTSADLLSTDGG--------RRKHDVVLAAARTSARGEFGV 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNN 645
            +S G +++     LP                +   + L  GE++ T+          ++
Sbjct: 569 VTSAGRLFRVSALELPHLVDTHAAPVLDGGAPVAAFVDLAPGEKVLTVTSLRA-----DS 623

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQ 704
             +   T  G V+R         N+     + L   D ++ +VE  T   ++   T   Q
Sbjct: 624 PGLALGTAAGVVKRVTTEY---ANKPIMEVITLKGDDVVVGAVELQTGTEELTFVTNEAQ 680

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            + F  + +R   GR   GV GI L  G + I    V                      L
Sbjct: 681 LLHFNAANVRP-QGRTGGGVAGIKLGAGARAIFFGSVSRDGIVVTGAGHPGSPNGEITSL 739

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                                        K     +F    R+ 
Sbjct: 740 ---------------------------------------------KVAPFTEFPAKGRAT 754

Query: 825 KGIRATDV 832
            G+RA   
Sbjct: 755 AGVRAHRF 762



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 51/175 (29%), Gaps = 25/175 (14%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +VL A          +   + +   +S          + + V    +           +
Sbjct: 552 DVVLAAARTSARGEFGVVTSAGRLFRVSALELPHLVDTHAAPVLDGGAPVAAFVDLAPGE 611

Query: 799 FILTVS-------------EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +LTV+               G  KR  + ++  +N+    +             +V   
Sbjct: 612 KVLTVTSLRADSPGLALGTAAGVVKRV-TTEY--ANKPIMEVITLK-----GDDVVVGAV 663

Query: 846 PV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVER 896
            +    +++  V+++  L+      +R   R   GV         R +   SV R
Sbjct: 664 ELQTGTEELTFVTNEAQLLHFNAANVRPQGRTGGGVAGIKLGAGARAIFFGSVSR 718



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 81/260 (31%), Gaps = 41/260 (15%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G + R   +D +  +            D +L+    +   +  + T  
Sbjct: 519 PDDPCWVLLSSTGLIARTTSADLLSTDGGR------RKHDVVLAAARTSARGEFGVVTSA 572

Query: 703 GQCVRFPISAIRVFAGRNSVGV--------RGISLAKGDQVISMAIVLHADADYDERICY 754
           G+  R     +      ++  V          + LA G++V+++  +             
Sbjct: 573 GRLFRVSALELPHLVDTHAAPVLDGGAPVAAFVDLAPGEKVLTVTSLRADSPGLALGTAA 632

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE---LKLKEQFILTVSEKGFGKR 811
                      +    E+ +LK D  V G +  +   E       E  +L          
Sbjct: 633 GVVKRVTTEYANKPIMEVITLKGDDVVVGAVELQTGTEELTFVTNEAQLLHF-------- 684

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD-------KGTLIR 864
            ++ + R   R+G G+    +          A+F  + +   I+V+         G +  
Sbjct: 685 -NAANVRPQGRTGGGVAGIKLGAGAR-----AIFFGSVSRDGIVVTGAGHPGSPNGEITS 738

Query: 865 VPVN---EIRIASRATKGVV 881
           + V    E     RAT GV 
Sbjct: 739 LKVAPFTEFPAKGRATAGVR 758


>gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 803

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/882 (31%), Positives = 450/882 (51%), Gaps = 105/882 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I ++ + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQLHPHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  +L D+ KDTVDF PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPD+ +  LM+ I+GPDFPTG ++ G  GIK AY TG+G +V+R  + 
Sbjct: 185 AEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGGIVQGIDGIKKAYETGKGKVVVRAKAD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     R QI+VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G RV +ELK
Sbjct: 245 IETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +A  ILN LY+ T LQ  ++ NMVA+   +P+   +  I+ +++  + EVV RRT +
Sbjct: 305 KDVNATSILNFLYKNTDLQVAYNFNMVAITEGRPKLMGIKPIISSYLNHQIEVVTRRTSF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L    +R H++ GL  A++ LDEV+ +IR S N   A+  L++                
Sbjct: 365 DLKHTEERMHIVEGLMKALSILDEVIALIRNSKNKRDAKENLVK---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T   +E Q  AI+ L+L RLT      ++ E ++L  +I     IL +  
Sbjct: 409 ----------TYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAALKHILENHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +   PR +        + ++ E  +  E ++++++  GY+KR  L
Sbjct: 459 ALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A       +  + +++ D V  +   +T    + F++ G      V +LP    + 
Sbjct: 519 RSFNASG-----KEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKD 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ + + ER+       E     +   ++ AT+ G ++++ LS F     +  
Sbjct: 574 LGQHVSQIVPIEEDERVVDCYTVSEFN---DERAIITATRQGMIKKSLLSGFKSTRTTKP 630

Query: 674 I-AMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + AMK+   D ++SV     +     I L T  G  + +P+S +    G  + G++ I+L
Sbjct: 631 LVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSEL-PDTGLRATGIKAINL 689

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
              D V+                                                     
Sbjct: 690 KDEDHVV----------------------------------------------------- 696

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +    E  IL  +++G  KR      + + R+ +GI      K      +VA      
Sbjct: 697 LADHIQTEDTILIATQRGALKRIGFKVLQQAKRAQRGITLLKELKKQPH-RVVAARVCRP 755

Query: 850 ND-QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTA 886
              Q  LVS +    G +      +I ++ + T G  +  T+
Sbjct: 756 EQSQYRLVSQQDETTGLI-----KDIHLSEQYTNGSFVVDTS 792



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 85/212 (40%), Gaps = 16/212 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD---YDERICY 754
             T+ G   R   +++R F   N+ G   I L + D V+ +      D      ++    
Sbjct: 506 SLTQEGYIKR---TSLRSF---NASGKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYL 559

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +  +     +   D  +  S       +  + +         E+ I+T + +G  K++  
Sbjct: 560 LIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITATRQGMIKKSLL 619

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQII-LVSDKGTLIRVPVNEIR 871
             F+ + R+ K + A  V +     AL++V  V  +   Q+I L++ +G  +  P++E+ 
Sbjct: 620 SGFKST-RTTKPLVAMKVKE---SDALISVMLVPADASSQLITLLTHRGMSLTYPMSELP 675

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                  G+   +   ++ VV  + I+  + +
Sbjct: 676 DTGLRATGIKAINLKDEDHVVLADHIQTEDTI 707



 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 11/127 (8%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +  +   + +   E  +L+++++G+ KRTS   F  S +   G++        E  
Sbjct: 484 EEKISEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLK--------ERD 535

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVER 896
            ++ +   N  D  ++ ++KG  + +PV+++        G     I    +DERVV    
Sbjct: 536 GVLKIIETNTQDYAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCYT 595

Query: 897 IRESEIV 903
           + E    
Sbjct: 596 VSEFNDE 602


>gi|15674931|ref|NP_269105.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes M1 GAS]
 gi|20139229|sp|Q9L7Q4|PARC_STRP1 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|7532889|gb|AAF63267.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|13622074|gb|AAK33826.1| putative DNA topoisomerase IV (subunit C) [Streptococcus pyogenes
           M1 GAS]
          Length = 819

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERISNGSFISDTISDQEVL-VAR 817


>gi|163841149|ref|YP_001625554.1| DNA topoisomerase IV subunit A [Renibacterium salmoninarum ATCC
           33209]
 gi|162954625|gb|ABY24140.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209]
          Length = 851

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/854 (32%), Positives = 414/854 (48%), Gaps = 99/854 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T        +  + I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 5   TSPKAPETGDFTENIIDIDVSQEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMS 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+  ++ +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D
Sbjct: 65  EMGLHPDRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD 124

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
              PAA RYTE RL  AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  G
Sbjct: 125 A-GPAAPRYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPEVLPAAFPNLLVNGATG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EV+     +I +P++ LD +M  + GPD PTG  I+G  GI+ AY
Sbjct: 184 IAVGMATNMAPHNLVEVISAARHLIAHPEVTLDDVMRFVPGPDLPTGGRIVGLDGIREAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS   R    +E+ +  R  +VVTE+PY V+   ++EKI + V  K++  I+D+ D
Sbjct: 244 ETGRGSFKTRAKIDVEQLTARRTGLVVTELPYTVSPEKVIEKIKDGVNAKKLQGISDIVD 303

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +D   G R+VIELK G +   I+ QLY+ T ++  F +N V L   +P+   L+ +L+ 
Sbjct: 304 LTDRNHGLRLVIELKNGFNPQAIIQQLYKLTPMEDSFGINNVTLVDGQPKTLGLLELLRV 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +VA R +VV RRT + L K +DR H++ G+ IA+ ++DEV++IIR S     AR  L+  
Sbjct: 364 YVAHRIDVVRRRTAFRLGKKKDRLHLVEGMLIAILDIDEVIQIIRTSEETAAARDRLIA- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q   ILELRL +LT   R ++  E + L
Sbjct: 423 -------------------------IYDLSEIQANYILELRLRQLTKYSRIELEKEQDEL 457

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------- 532
             EI+E   IL+S   L  ++  EL  + ++  TPRRT ++E                  
Sbjct: 458 RKEIEELERILNSEPVLRELVSSELAEIAEKYGTPRRTVLLESEAVSPTVAKALAAATTP 517

Query: 533 ---------IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
                    I  +   V +S  G + R          R     SG   + + F   +   
Sbjct: 518 GKATPLALEIADDPCWVLLSSSGQIAR-------TSTREALSDSGARTKHDVF-KSVIAT 569

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           S    V   +S G + + +V  +P+  P A    L   +   +   +             
Sbjct: 570 SARGEVGAVTSAGRMLRLQVLDMPVLPPTAGLPNLAGGVPAKEFITLLKGESLISFVPI- 628

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            +  V   TK G V+R      +      +I + L  +D +++      +++++  T+  
Sbjct: 629 -DAVVALGTKQGIVKRVTPEYPLN-REDWEI-ISLKDKDSVVAAAAAQDDDELVFITEQA 685

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +RF  +A+R   GR + G+ GI LA  D V+S A+V   D             +    
Sbjct: 686 QLLRFSATAVRP-QGRTAGGMAGIKLASNDVVLSFAVVAAGDPAAVVVSISGSTDALPG- 743

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                                   +  G  K +   ++    R+
Sbjct: 744 ----------------------------------------TAPGSAKVSDFSEYPPKGRA 763

Query: 824 GKGIRATDVSKINE 837
             G+RA    K  +
Sbjct: 764 TGGVRAHRFLKGED 777



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV---------SE 805
           +       RL   D   +       ++ G +  +    L   E  I  V         ++
Sbjct: 578 VTSAGRMLRLQVLDMPVLPPTAGLPNLAGGVPAKEFITLLKGESLISFVPIDAVVALGTK 637

Query: 806 KGFGKR-TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           +G  KR T   ++ + NR    I +       +  ++VA     D+D+++ ++++  L+R
Sbjct: 638 QGIVKRVTP--EYPL-NREDWEIISLK-----DKDSVVAAAAAQDDDELVFITEQAQLLR 689

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                +R   R   G+     A ++ V+S   +   +
Sbjct: 690 FSATAVRPQGRTAGGMAGIKLASNDVVLSFAVVAAGD 726



 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 81/270 (30%), Gaps = 32/270 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    + +  + +          D   SV   +   ++   T  G
Sbjct: 529 DDPCWVLLSSSGQIARTSTREALSDSGART------KHDVFKSVIATSARGEVGAVTSAG 582

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  + V          + GV     I+L KG+ +IS   +    A   ++    
Sbjct: 583 RMLRLQVLDMPVLPPTAGLPNLAGGVPAKEFITLLKGESLISFVPIDAVVALGTKQGIVK 642

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +                   K+         ++       ++  +L         R S+ 
Sbjct: 643 RVTPEYPLNREDWEIISLKDKDSVVAAAAAQDDDELVFITEQAQLL---------RFSAT 693

Query: 816 DFRISNRSGKGIRATDVSKIN---------EIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
             R   R+  G+    ++  +                V  ++ +   +  +  G+     
Sbjct: 694 AVRPQGRTAGGMAGIKLASNDVVLSFAVVAAGDPAAVVVSISGSTDALPGTAPGSAKVSD 753

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVER 896
            +E     RAT GV      K E ++ +  
Sbjct: 754 FSEYPPKGRATGGVRAHRFLKGEDILLLAW 783


>gi|293501172|ref|ZP_06667023.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291096177|gb|EFE26438.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 58-424]
          Length = 800

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I        V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDIDDFGEVIDM 797



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|308177798|ref|YP_003917204.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
 gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117]
          Length = 877

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/860 (31%), Positives = 398/860 (46%), Gaps = 100/860 (11%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M         E+  + I  + +T+EM++S+L YA +VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MARKKSEEIPEDFVENIVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M QMG+   K +VK AR+ GEVMGK HPHG+ AIYDA+ R+AQD+SLRL LI+G GNFGS
Sbjct: 61  MAQMGLRPEKGHVKSARVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  +  +L +D V+F PNYD  F +P VL + +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGT 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVV     ++ +P+  ++ LM+ I GPD P+G  + G  GIK+
Sbjct: 180 TGIAVGMATNMAPHNLSEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGGSVTGLDGIKD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG    R    +EK S  +  +VVTE+PY V    ++EKI + V  K+I  I+D+
Sbjct: 240 AYRTGRGLFRTRATVVLEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISDV 299

Query: 300 RDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +D   G ++VIELK G + + +L  LY+YT ++  F +N VAL   +P    L  +L
Sbjct: 300 VDLTDRHHGLKLVIELKNGFNPNAVLASLYKYTPMEDSFGINNVALVNGQPRTMGLRELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             +V  R +VV RRT + L K  DR H++ GL IA+ ++D+V+ IIR S     AR  LM
Sbjct: 360 TVYVDHRLDVVRRRTTHRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARERLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LSE Q   ILELRL +LT   + ++  E  
Sbjct: 420 T--------------------------VFDLSEPQASHILELRLRQLTKYSKLELETEAE 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE-- 536
            L  EI+E   IL S   L  ++  EL  + +   TPRRT++++       +   + E  
Sbjct: 454 QLRKEIEELRAILESDQLLRNLVSDELGQMAETFGTPRRTKLLKSAQLAPLKGTALPEEV 513

Query: 537 ---------------DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                             V +S  G + R                  +  +         
Sbjct: 514 GTGKKAKLAMEVSDTPCWVLLSATGQIARTQDRTDLDHSAARIKHDVLTSQVASSARGEI 573

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
                      ++ G + +  +  +P+         L + + + +  ++           
Sbjct: 574 GA--------LTTTGRIVRISLIDVPVLPESHGFPQLAHGVPIAEFLKLGQAETVAALVP 625

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
              N  V   TK+G V+R      +   R    A+ L  +D +++       ++++  TK
Sbjct: 626 L--NQVVAIGTKNGVVKRVTPDYPLN--RDEFEAITLKDKDVVVAATPAQDADELVFITK 681

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             Q +RF  S +R   GR   G+ GI L   DQVI   +V                 +  
Sbjct: 682 HAQLLRFSASVVRA-QGRTGQGMSGIKLGADDQVIFFGVVPGGSKQAVVATIAAGSQTLP 740

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                           K T   +F +  
Sbjct: 741 GTSGQS-----------------------------------------VKLTDFSEFPVKG 759

Query: 822 RSGKGIRATDVSKINEIGAL 841
           R+  G+RA    K  +   L
Sbjct: 760 RATAGVRAHRFVKGEDHLQL 779



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 9/166 (5%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           QV S A           RI  +  +       S    ++      +        E    L
Sbjct: 564 QVASSARGEIGALTTTGRIVRISLIDVPVLPESHGFPQLAHGVPIAEFLKLGQAETVAAL 623

Query: 794 KLKEQFILTVSEKGFGKR-TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               Q +   ++ G  KR T   D+ + NR      A  +   +    +VA  P  D D+
Sbjct: 624 VPLNQVVAIGTKNGVVKRVTP--DYPL-NRDE--FEAITLKDKDV---VVAATPAQDADE 675

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           ++ ++    L+R   + +R   R  +G+       D++V+    + 
Sbjct: 676 LVFITKHAQLLRFSASVVRAQGRTGQGMSGIKLGADDQVIFFGVVP 721



 Score = 44.4 bits (103), Expect = 0.095,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 74/266 (27%), Gaps = 38/266 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +  G + R               A ++        V +  +  +I   T  G
Sbjct: 527 DTPCWVLLSATGQIART-----QDRTDLDHSAARIKHDVLTSQVASSARG-EIGALTTTG 580

Query: 704 QCVRFPISAIRVFAG-----RNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  + V        + + GV     + L + + V ++  +    A   +     
Sbjct: 581 RIVRISLIDVPVLPESHGFPQLAHGVPIAEFLKLGQAETVAALVPLNQVVAIGTKNGVVK 640

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +                   K+         +        K   +L         R S+ 
Sbjct: 641 RVTPDYPLNRDEFEAITLKDKDVVVAATPAQDADELVFITKHAQLL---------RFSAS 691

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVS----------DKGTLIR 864
             R   R+G+G+    +        ++    V     Q ++ +            G  ++
Sbjct: 692 VVRAQGRTGQGMSGIKLGA---DDQVIFFGVVPGGSKQAVVATIAAGSQTLPGTSGQSVK 748

Query: 865 -VPVNEIRIASRATKGVVIFSTAKDE 889
               +E  +  RAT GV      K E
Sbjct: 749 LTDFSEFPVKGRATAGVRAHRFVKGE 774


>gi|94994200|ref|YP_602298.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
 gi|94547708|gb|ABF37754.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10750]
          Length = 821

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 573 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 629

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 630 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 689 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 749 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 770

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 771 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|163790378|ref|ZP_02184809.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
 gi|159874282|gb|EDP68355.1| DNA topoisomerase IV subunit A [Carnobacterium sp. AT7]
          Length = 817

 Score =  627 bits (1618), Expect = e-177,   Method: Composition-based stats.
 Identities = 285/896 (31%), Positives = 467/896 (52%), Gaps = 99/896 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K 
Sbjct: 2   ENRAEIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTADKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ R++QDW  R +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKQREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  L+ D+ K+TVDF  N+D + +EP V  A YPN+LVNG  GI+ G AT+I
Sbjct: 122 TEARLSKISAELVRDIDKETVDFILNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P+HNLGEV+D  V +ID+PD  +  LM+ ++GPDFPTGA++ G  GIK AY TG+G I++
Sbjct: 182 PSHNLGEVIDATVHLIDDPDASVTDLMQYVKGPDFPTGAILQGVDGIKKAYETGKGKIIV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE+  G +EQIV+ EIPY+VNKA ++ K+ E+   KR+  IA++RDESDR G ++
Sbjct: 242 RSKTRIEEVRGGKEQIVINEIPYEVNKAVLVRKMDEIRLNKRVDGIAEVRDESDRNGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L + T LQ  ++ NMVA++  +P++  ++ +L+A++  ++EV+ 
Sbjct: 302 VVELKKEANAGGILNYLLKNTDLQVAYNFNMVAIDKKRPKQVGIVRMLQAYLDHKQEVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT Y L KA  R H++ GL  A++ LD+V+  IR S + + A+  L++R          
Sbjct: 362 RRTNYNLRKAESRQHIVSGLIKALSILDQVIEAIRSSKDKKNAKENLIER---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E+Q  AI+ L+L RLT      + NE ++L  +I     I
Sbjct: 412 ----------------FDFTEIQAEAIVSLQLYRLTNTDITALENEADALNKDIMAYNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L S   L  ++K+EL+ VK +  +PR T I + +    ++ E  I  E+++V+V+  GY+
Sbjct: 456 LGSSQELNKVMKKELIEVKKKYASPRLTVIEDEIEELKIDTELLIASEEVMVSVTKEGYI 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +      + + +++ D+   +  ++T   +L F+S G +    +  +  
Sbjct: 516 KRTSLRSYSASKP-----TEIGIKEGDYPIYIQQLNTLNHLLIFTSKGNIIYRPIHEISD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-- 666
              +  G  L   ++    E +   +     E         F TK G +++  +S+++  
Sbjct: 571 LRWKDMGDHLSQNIAFETDETV---VKVFGLEKQLPPATFTFITKEGYIKQTAVSEYVIG 627

Query: 667 -QINRSGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                    A+KL  + DE+L++    +    D+ L T  G  +R+P+  +    G  + 
Sbjct: 628 RNYKNKSFSAIKLKTTTDELLNIVYTEKPLSKDVFLVTNRGFGLRYPLDEV-PTVGAKAA 686

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L  GD V++  +V                                         
Sbjct: 687 GVKSINLKDGDYVVNGVLVD---------------------------------------- 706

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         +  ++ ++++G  K+ +  DF    R+ +G+      K N    + 
Sbjct: 707 ----------TTASKAELMILTQRGSVKKMNILDFEPLGRAKRGLLLLRELKKNPH-RVA 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             F  +  D   +++ KG  I +      I+ R + G  I      + V     I 
Sbjct: 756 FAFEASKEDNYRILTSKGQEISLSSQSYSISDRYSNGSFIL-----DEVADGTPIE 806



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G ++R  L  +     +    + +   D  + ++     N +L+ T  G  + 
Sbjct: 506 MVSVTKEGYIKRTSLRSYSASKPTE---IGIKEGDYPIYIQQLNTLNHLLIFTSKGNIIY 562

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            PI  I               L   D                                  
Sbjct: 563 RPIHEIS-------------DLRWKD---------------------------------- 575

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS--GK 825
              +  S       +  + +    E +L       ++++G+ K+T+  ++ +  R+   K
Sbjct: 576 -MGDHLSQNIAFETDETVVKVFGLEKQLPPATFTFITKEGYIKQTAVSEY-VIGRNYKNK 633

Query: 826 GIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              A  +        L+ +       +  + LV+++G  +R P++E+        GV   
Sbjct: 634 SFSAIKLKTT--TDELLNIVYTEKPLSKDVFLVTNRGFGLRYPLDEVPTVGAKAAGVKSI 691

Query: 884 STAKDERVVSVERIRESEIVDE 905
           +    + VV+   +  +    E
Sbjct: 692 NLKDGDYVVNGVLVDTTASKAE 713


>gi|241896017|ref|ZP_04783313.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
 gi|241870748|gb|EER74499.1| DNA topoisomerase (ATP-hydrolyzing) [Weissella paramesenteroides
           ATCC 33313]
          Length = 819

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/909 (31%), Positives = 452/909 (49%), Gaps = 110/909 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E   I  +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K++
Sbjct: 3   ETGNIQELSLEAVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNKDGNTFDKQF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+AL RM+QDW LR  LIE  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRAPLIEMHGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L DL K+TVD   N+D +  EP VL A +PN+LVNG  GI+ G AT+IP
Sbjct: 123 EARLSKLAGEMLRDLDKETVDMVLNFDDTEYEPTVLPAHFPNLLVNGATGISAGYATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D  + ++ +P+  L+ LM  ++GPDFPTG +I G  GIK+AY  GRG IV+R
Sbjct: 183 PHNLGEVIDALIYLLAHPNASLEDLMGFVQGPDFPTGGIIQGVDGIKSAYKNGRGRIVVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I    G + QI ++EIPY+VNKA +++KI E+   K +  I ++RDESDR G  + 
Sbjct: 243 SKTEIIALKGGKSQIQISEIPYEVNKATLVKKIDEIRLNKDVSGIVEVRDESDRDGLSIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+   IL  L + T LQ  ++ NMVA++  +PER  L   L+AF+  + E++ +
Sbjct: 303 IELSKDANVQGILAYLLKKTDLQVTYNFNMVAIHNLRPERVGLKTALQAFLDHQVEIITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT+Y L KA++R H++ GL  A++ LDEV+  IR S + + A++ L+ +           
Sbjct: 363 RTEYDLRKAKERQHIVTGLIKALSILDEVIATIRSSEDRKNAKQNLVDK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +  Q  AI+ L+L RLT      ++ E   L   I     IL
Sbjct: 412 ---------------YEFTLEQAEAIVTLQLYRLTNTDVTQLQAEFEELSDRIMHFNAIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           S    L   ++QE  S+K E ++PR T I      L  +    +  ED+ V VS +GYVK
Sbjct: 457 SEPKVLRQELRQEFKSIKKEYNSPRLTTIEADVQELKYDSTVTVADEDVAVLVSKMGYVK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  ++A            +RD+D    +  V+T   +  F++ G V    +  LP  
Sbjct: 517 RSSLRSFKASGDEN------GLRDDDEPLFIERVNTLQHMFIFTNKGHVIYRPIHELPEF 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---I 666
             +  G+ L   +S    +     +    D +S    ++  AT  G +++    D     
Sbjct: 571 KWKEPGEHLSQSVSGFISDEEIIHVEIVNDINSLEGTWL-SATNDGYIKQFNFEDLTPRS 629

Query: 667 QINRSGKIAMKLDSRDEILSVETC-----TQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              +   + MKL + D  +            +  ++LTTK    +R+ ++ +   +G  +
Sbjct: 630 TYKKRSTVYMKLKADDSSIIGLEYLSIGAASDRTVILTTKHAVGLRYDVTEV-PLSGNRT 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ ++LA  D +++M+                                          
Sbjct: 689 AGVKAMNLADSDNIVNMS------------------------------------------ 706

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                         ++Q +  ++ +G  K     +  I++R+ KG+      K +    +
Sbjct: 707 -----------TATEKQALAIITHRGAFKWMPVSEIPITSRARKGVAIMRELKKDSH-EI 754

Query: 842 VAVFPVNDNDQ-----IILVSDKGTLIRVPVN--EIRIASRATKGVVIFSTAKDERVVSV 894
           +A   +   DQ     + + + +G   R  V+  +  ++ R + G  I  T  D +  ++
Sbjct: 755 IATIVI---DQQAPAALSIYTSRGK--RFDVSPKDHALSQRYSNGSFIIDTDTDGQPTTI 809

Query: 895 ERIRESEIV 903
           +   E+++ 
Sbjct: 810 KLYDETKVE 818


>gi|15900740|ref|NP_345344.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae TIGR4]
 gi|19861240|sp|P72525|PARC_STRPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|14972328|gb|AAK74984.1| topoisomerase IV, subunit A [Streptococcus pneumoniae TIGR4]
          Length = 823

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/884 (31%), Positives = 452/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 688 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 748 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 145/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V++ +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 645 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|94990280|ref|YP_598380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
 gi|94543788|gb|ABF33836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10270]
          Length = 824

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 7   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 67  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 127 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 187 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 246

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 247 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 307 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 367 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 411 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 460

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 461 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 520

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 521 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 575

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 576 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 632

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 633 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 692 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 751

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 752 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 773

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 774 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 822


>gi|195978265|ref|YP_002123509.1| DNA topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974970|gb|ACG62496.1| topoisomerase IV subunit A ParC [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 819

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/889 (31%), Positives = 448/889 (50%), Gaps = 76/889 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVINAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTE+PY+VNKA +++KI ++    R+  IA++RDESDR G R+ IE
Sbjct: 242 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNRVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+
Sbjct: 302 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 QFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++ E + L   I     I+ +
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      ++++    I+ E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    V+ L     
Sbjct: 516 SPRSFHASSLE-----EIGKRDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    + +   + + E   S+        T+HG ++R +  + +     
Sbjct: 571 KDIGEHLSQAITNFAADEM---VIYAELIQSFEQGLYASVTQHGLIKRFERKEMMPWRSY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +         D+LL T+ G  +RF    I    G  + GV+GI+
Sbjct: 628 KSKSIKYAKLKAADDRIIAIAPIVMEDLLLVTQQGYALRFSSQEI-PIQGLKAAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D ++S   V         +   +K               +       +   N    
Sbjct: 687 LKAQDYLVSACPVNADSFFVLTQRGALK--------------RVAIADIPQTSRANRGLL 732

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +      G  K                I   D+   +            
Sbjct: 733 VLRELKTKPHRVFLA---GMVK------------GDTTIGTIDLFTHDSEDT-------A 770

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + Q+ ++S  G   ++ +N + ++ R + G  I  +  D+ V +   I
Sbjct: 771 SDQQLEVISKTGQQYQLALNSLSLSDRTSNGSFISESISDQEVAAARLI 819



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 59/479 (12%), Positives = 127/479 (26%), Gaps = 85/479 (17%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           I+L  D+      +  +  +E+Q      ++ +       +G   I +   +    I   
Sbjct: 300 IELKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIK 359

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
                       +   E L     +       I          D      +    S    
Sbjct: 360 RSQFDKEKAEKRLHIVEGLIRVLSILDE---IIALIRASDNKADAKENLKVSYDFSEEQA 416

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
              V L +YR            + ++E  + +L             +   +Y      L 
Sbjct: 417 EAIVTLQLYRLTNTD----IVTLQQEEHDLRELITT----LSAIIGNEATMYNVMKRELR 468

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G        L++ +  +  +              V  T+ G ++R     F  
Sbjct: 469 EVKKKFAGP------RLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSPRSFHA 522

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +      +     D ++ V+     + +LL T LG  +  P+  +              
Sbjct: 523 SSLEE---IGKRDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELT------------- 566

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D                                           ++  +   + +
Sbjct: 567 DLRWKD-----------------------------IGEHLSQAITNFAADEMVIYAELIQ 597

Query: 788 ERCQELKLKEQFILTVSEKGFGKR------TSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              Q L         V++ G  KR           ++  +     I+   +   +    +
Sbjct: 598 SFEQGLYAS------VTQHGLIKRFERKEMMPWRSYKSKS-----IKYAKLKAAD--DRI 644

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +A+ P+   D ++LV+ +G  +R    EI I      GV   +    + +VS   +   
Sbjct: 645 IAIAPIVMED-LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACPVNAD 702


>gi|148267844|ref|YP_001246787.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150393906|ref|YP_001316581.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257795589|ref|ZP_05644568.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|258420495|ref|ZP_05683437.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|295406299|ref|ZP_06816106.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297244528|ref|ZP_06928411.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|147740913|gb|ABQ49211.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946358|gb|ABR52294.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257789561|gb|EEV27901.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9781]
 gi|257843443|gb|EEV67850.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9719]
 gi|294968887|gb|EFG44909.1| DNA topoisomerase IV [Staphylococcus aureus A8819]
 gi|297178558|gb|EFH37804.1| DNA topoisomerase IV [Staphylococcus aureus A8796]
 gi|315131158|gb|EFT87142.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|329727393|gb|EGG63849.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 800

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC
           17982]
          Length = 823

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 283/905 (31%), Positives = 417/905 (46%), Gaps = 118/905 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  +    E+++ IT + ++DEM+ S+L YA++VI  RA+PD RDGLKPV RRILF M Q
Sbjct: 4   KDQVVDIPEKDENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQ 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D 
Sbjct: 64  MGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+  AA  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GI
Sbjct: 123 DGPAAARYTEARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL E + G + ++DNP   +  LM  I GPD P G VI+G  GIK AY 
Sbjct: 183 AVGMATNVAPHNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIVGLEGIKEAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+   R    IE+ +  +  I+VT++PY V    ++EKI E     R+  I+ +++ 
Sbjct: 243 TGRGAFKTRAKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F
Sbjct: 303 TDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V  RR+++ L K  DR H++ GL IA+ ++D+V+ IIR S + E AR  LM   
Sbjct: 363 LDHRLDVTTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMT-- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q   ILELRL RLT   R ++  E + L 
Sbjct: 421 ------------------------AFDLSEAQANYILELRLRRLTKFSRIELEAERDELL 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-------- 533
            +I    +IL     L  ++K+EL  V D L TPRRT ++                    
Sbjct: 457 AKIASLREILEDPELLRALVKKELREVSDRLGTPRRTLLLASTGTPVGAAAADDAALAAL 516

Query: 534 --------------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                           +  VV +S  G + RV          GG           D    
Sbjct: 517 PSVSRSGKGLDLQIPDDPCVVVLSSTGALARV---------EGGDPLEPGPRAASDGWRV 567

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
               +  + V   +  G  ++  V  LP       G +L   +  +        +P    
Sbjct: 568 QLPSTARSQVAVVTEDGIAHRIDVVDLPALPRFETGLSLAGAMPASLLLHTD--VPAVGL 625

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                   V   T  G V+R +     +        + L+  D ++  + C+ E D++  
Sbjct: 626 LDPEGTDVVAMGTTRGTVKRLRPDVLQR---DEWEVIALEDGDRLVGFDRCSDEADLVFI 682

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +   Q +R P + +R   GR + G+ G+ L  G + +   +V          +       
Sbjct: 683 SSDAQLLRTPAAKVRP-QGRTAGGMAGMKLNAGAEALGFWVVEAPIDAVVVTVAAALGAL 741

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                 +                                           K T    +  
Sbjct: 742 PGTGQTT------------------------------------------VKVTPFECYPT 759

Query: 820 SNRSGKGIRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
             R G+G+R     +  +   +  V   P          S  G+ + +P  + R   R  
Sbjct: 760 KGRGGQGVRCQRFLRGEDRLDIAWVGTKPAR------AASADGSPVELPAEDER---RDG 810

Query: 878 KGVVI 882
            GV I
Sbjct: 811 SGVPI 815



 Score = 47.9 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   LV     +D   ++ +S    L+R P  ++R   R   G+        
Sbjct: 662 EDGDRLVGFDRCSDEADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNAG 714


>gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/883 (31%), Positives = 449/883 (50%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|225868404|ref|YP_002744352.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701680|emb|CAW99003.1| topoisomerase IV subunit A [Streptococcus equi subsp.
           zooepidemicus]
          Length = 822

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 277/889 (31%), Positives = 448/889 (50%), Gaps = 76/889 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 185 NLSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKGRVVVRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G R+QI+VTE+PY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 365 QFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++ E + L   I     I+ +
Sbjct: 409 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGN 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      ++++    I+ E+  V+V+  GY+KR 
Sbjct: 459 EATMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    V+ L     
Sbjct: 519 SPRSFHASSLE-----EIGKRDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    + +   + + E   S+        T+HG ++R +  + +     
Sbjct: 574 KDIGEHLSQAITNFAADEM---VIYAELIQSFEQGLYASVTQHGLIKRFERKEMMPWRSY 630

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL + D+ +         D+LL T+ G  +RF    I    G  + GV+GI+
Sbjct: 631 KSKSIKYAKLKAADDRIIAIAPIVMEDLLLVTQQGYALRFSSQEI-PIQGLKAAGVKGIN 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D ++S   V         +   +K               +       +   N    
Sbjct: 690 LKAQDYLVSACPVNADSFFVLTQRGALK--------------RVAIADIPQTSRANRGLL 735

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +      G  K            +  G          +  +        
Sbjct: 736 VLRELKTKPHRVFLA---GMVK----------GDTTTGTIDLFTHDSEDTAS-------- 774

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + Q+ ++S  G   ++ +N + ++ R + G  I  +  D+ V +   I
Sbjct: 775 -DQQLEVISKTGQQYQLALNSLSLSDRTSNGSFISESISDQEVAAARLI 822



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 69/544 (12%), Positives = 149/544 (27%), Gaps = 85/544 (15%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  L   V     V +I     N +      ++   + +
Sbjct: 238 RVVVRSRTEIEDLKGGRQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRT 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D+      +  +  +E+Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRK 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            I               +   E L     +       I          D      +    
Sbjct: 358 SIIIKRSQFDKEKAEKRLHIVEGLIRVLSILDE---IIALIRASDNKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR            + ++E  + +L             +   +Y   
Sbjct: 415 SEEQAEAIVTLQLYRLTNTD----IVTLQQEEHDLRELITT----LSAIIGNEATMYNVM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +  G        L++ +  +  +              V  T+ G ++R   
Sbjct: 467 KRELREVKKKFAGP------RLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F   +      +     D ++ V+     + +LL T LG  +  P+  +         
Sbjct: 521 RSFHASSLEE---IGKRDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELT-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 L   D                                           ++  + 
Sbjct: 570 -----DLRWKD-----------------------------IGEHLSQAITNFAADEMVIY 595

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKR------TSSYDFRISNRSGKGIRATDVSKIN 836
             + +   Q L         V++ G  KR           ++  +     I+   +   +
Sbjct: 596 AELIQSFEQGLYAS------VTQHGLIKRFERKEMMPWRSYKSKS-----IKYAKLKAAD 644

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               ++A+ P+   D ++LV+ +G  +R    EI I      GV   +    + +VS   
Sbjct: 645 --DRIIAIAPIVMED-LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSACP 701

Query: 897 IRES 900
           +   
Sbjct: 702 VNAD 705


>gi|225870669|ref|YP_002746616.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
 gi|225700073|emb|CAW94138.1| topoisomerase IV subunit A [Streptococcus equi subsp. equi 4047]
          Length = 822

 Score =  627 bits (1617), Expect = e-177,   Method: Composition-based stats.
 Identities = 276/889 (31%), Positives = 446/889 (50%), Gaps = 76/889 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P+  LD LME++ GPDFPTG +I G   IK AY TG+  +V+R  
Sbjct: 185 NLSEVIDAVIYMIDHPNAKLDKLMELLPGPDFPTGGIIQGAAEIKKAYETGKSRVVVRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTE+PY+VNKA +++KI ++    ++ DIA++RDESDR G R+ IE
Sbjct: 245 TEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDRTGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R+ ++++R+
Sbjct: 305 LKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRKSIIIKRS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 365 QFDKEKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++ E + L   I     I+  
Sbjct: 409 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQQEEHDLRELITTLSAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      ++++    I+ E+  V+V+  GY+KR 
Sbjct: 459 EATMYNVMKRELREVKKKFAGPRLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    V+ L     
Sbjct: 519 SPRSFHASSLE-----EIGKRDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELTDLRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    + +   + + E   S+     +  T+HG ++R +  +       
Sbjct: 574 KDIGEHLSQAIANFAADEL---VIYAELIQSFEEGLYISVTQHGLIKRFERKELTPWRTY 630

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL   D+ +         D+LL T+ G  +RF    I    G  + GV+GI+
Sbjct: 631 KSKSIKYAKLKDIDDRIVAIAPIIMEDLLLVTQQGYALRFSSQEI-PIQGLKAAGVKGIN 689

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D ++S   V         +   +K               +       +   N    
Sbjct: 690 LKAQDYLVSACPVNADSFFVLTQRGALK--------------RVAIADIPQTSRANRGLP 735

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +ELK K   +      G  K            +  G          +  +        
Sbjct: 736 VLRELKTKPHRVFLA---GMVK----------GDTTTGTIDLFTHDSEDTAS-------- 774

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            + Q+ ++S  G   ++ +N + ++ R + G  I  +  D+ V +   I
Sbjct: 775 -DQQLEVISKTGQQYQLALNSLSLSDRTSNGSFISESISDQEVAAARLI 822



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 72/545 (13%), Positives = 155/545 (28%), Gaps = 85/545 (15%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
              VV  RT+    K   +  ++  L   V     V +I     N +      ++   + 
Sbjct: 237 SRVVVRSRTEIEDLKGGKQQIIVTELPYEVNKAVLVKKIDDVRVNNKVPDIAEVRDESDR 296

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLG 481
           + ++  I+L  D+      +  +  +E+Q      ++ +       +G   I +   +  
Sbjct: 297 TGLRIAIELKKDADSQTILNYLLKYTELQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHR 356

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I               +   E L     +       I          D      +   
Sbjct: 357 KSIIIKRSQFDKEKAEKRLHIVEGLIRVLSILDE---IIALIRASDNKADAKENLKVSYD 413

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S       V L +YR            + ++E  + +L                 +Y  
Sbjct: 414 FSEEQAEAIVTLQLYRLTNTD----IVTLQQEEHDLRELITT----LSAIIGDEATMYNV 465

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               L     +  G        L++ +  +  +              V  T+ G ++R  
Sbjct: 466 MKRELREVKKKFAGP------RLSELQAESQAIEIDSASLILEEETFVSVTQGGYIKRTS 519

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F   +      +     D ++ V+     + +LL T LG  +  P+  +        
Sbjct: 520 PRSFHASSLEE---IGKRDDDHLIFVKQAKTTDHLLLFTNLGNVIYRPVYELT------- 569

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
                  L   D                                    E ++    + + 
Sbjct: 570 ------DLRWKD----------------------------------IGEHLSQAIANFAA 589

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKR------TSSYDFRISNRSGKGIRATDVSKI 835
           +  +      +   +  +I +V++ G  KR      T    ++  +     I+   +  I
Sbjct: 590 DELVIYAELIQSFEEGLYI-SVTQHGLIKRFERKELTPWRTYKSKS-----IKYAKLKDI 643

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +    +VA+ P+   D ++LV+ +G  +R    EI I      GV   +    + +VS  
Sbjct: 644 D--DRIVAIAPIIMED-LLLVTQQGYALRFSSQEIPIQGLKAAGVKGINLKAQDYLVSAC 700

Query: 896 RIRES 900
            +   
Sbjct: 701 PVNAD 705


>gi|73916932|gb|AAZ93334.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 450/883 (50%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +      AT+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916866|gb|AAZ93301.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 454/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   ++  +       +   +     +      AT+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 452/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|227535107|ref|ZP_03965156.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
 gi|227187248|gb|EEI67315.1| possible DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus
           paracasei subsp. paracasei ATCC 25302]
          Length = 814

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 291/901 (32%), Positives = 448/901 (49%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDILAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADN-----GLKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGSDEKV---LAVFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 671 --SGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I++    T +   D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTTAKVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPVQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|194397352|ref|YP_002037490.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae G54]
 gi|194357019|gb|ACF55467.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae G54]
          Length = 823

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/884 (31%), Positives = 453/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + G DFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGXDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 688 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 748 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 355 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 412 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 464 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 518 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 566

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 567 -----DIRWKD----------------------------------IGEHLSQTITNFETN 587

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 588 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 644

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 645 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|94988399|ref|YP_596500.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94992281|ref|YP_600380.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
 gi|94541907|gb|ABF31956.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS9429]
 gi|94545789|gb|ABF35836.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS2096]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 573 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 629

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 630 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 689 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 749 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 770

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 771 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|300812416|ref|ZP_07092846.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496583|gb|EFK31675.1| DNA topoisomerase IV, A subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 827

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 272/891 (30%), Positives = 434/891 (48%), Gaps = 96/891 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +      ++++  I  E + V +S  GY
Sbjct: 456 ILADPKVLQKEIIKELQAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G         +             +  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNGLPETDRVVYEGSLSTLTN-----LYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    NL  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALD--DPNLAFLLATNDGFIKQVALADLQP 628

Query: 668 INR---SGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +        +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGARAA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 689 -GVKSINLKEDDYVVACLVTDPQYEDLLKVGL---------------------------- 719

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                V+++G  K+        ++R+ +G+      K      +
Sbjct: 720 ---------------------VTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPH-RI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           VA+     N ++IL++      +IR   ++  +  R + G  +     D  
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTDGE 806



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 81/215 (37%), Gaps = 18/215 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY 754
           L ++ G   R   S++R F      G  G  L + D+V+   S++ + +     +     
Sbjct: 509 LISRDGYIKR---SSMRSFQS-TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLI 562

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGKRTS 813
            + +         D  +  S +   + + +I      E L       L  +  GF K+ +
Sbjct: 563 YRPVHELVESKWKDVGQHLSQELGLAADESIIRVFALEALDDPNLAFLLATNDGFIKQVA 622

Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
             D + +    +R+   I A  +   +     V +   ++  +I L +++   ++  + E
Sbjct: 623 LADLQPTRTYKSRA---IMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGE 679

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +        GV   +  +D+ VV+   + + +  D
Sbjct: 680 VPQVGARAAGVKSINLKEDDYVVA-CLVTDPQYED 713


>gi|73916872|gb|AAZ93304.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/883 (31%), Positives = 451/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +      AT+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916858|gb|AAZ93297.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916860|gb|AAZ93298.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916862|gb|AAZ93299.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916864|gb|AAZ93300.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 452/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|227513445|ref|ZP_03943494.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
 gi|227083318|gb|EEI18630.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC
           11577]
          Length = 812

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/828 (33%), Positives = 440/828 (53%), Gaps = 45/828 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIVV+EIPY+VNKA ++++I EL   K++  I+++RD+SDR+G  +VIE
Sbjct: 242 TKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F+ EV+ +RT
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+ 
Sbjct: 408 ------------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL ++      PRRT I +    + +  +  I  ED+VV VSH GY+KR 
Sbjct: 456 PKELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A            ++DED+   +  ++    +  F+S G +    ++ +     
Sbjct: 516 SIRSYKASGNEN------GLKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I     F   +        + AT  G+++R KL+D       
Sbjct: 570 KDTGEHISQTIGLDNDEEIIGTFAFSSLK---EKGLFLIATDDGHIKRTKLTDLAPGRTY 626

Query: 672 GKIAM---KLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            K A    KL      +       + D    +LL +KLG  +R+ I  +    G  + GV
Sbjct: 627 KKHAYMYEKLKDPKSRIVAIDYLADPDASGKLLLISKLGLALRYGIDEV-PINGARTTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +LA GD + ++ +V   D              A + + +        +      + +
Sbjct: 686 KSQNLADGDVITNLQLVNDDDVIAIVTQRGAFKKLAVKEIPATSRARKGVMILRELKQNS 745

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                   +  ++  +  +++          +F +  R   G    DV
Sbjct: 746 HRVVDFTVINNEDTPLEVLTDHQRVHDILPNEFSLGGRYSNGSFVIDV 793



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 14/221 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ +++ +  G   R   S+IR +    + G     L   D  I M  +   D   
Sbjct: 496 IIPDEDVVVMVSHDGYIKR---SSIRSY---KASGNEN-GLKDEDYPIFMKQMNARDHLF 548

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               +     + +     +   DT E  S       +  I          ++   L  ++
Sbjct: 549 MFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEKGLFLIATD 608

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTL 862
            G  KRT   D     R+ K          +    +VA+  + D D   +++L+S  G  
Sbjct: 609 DGHIKRTKLTDLAP-GRTYKKHAYMYEKLKDPKSRIVAIDYLADPDASGKLLLISKLGLA 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R  ++E+ I    T GV   + A  + + +++ + + +++
Sbjct: 668 LRYGIDEVPINGARTTGVKSQNLADGDVITNLQLVNDDDVI 708


>gi|55820668|ref|YP_139110.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMG
           18311]
 gi|55822559|ref|YP_141000.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus
           CNRZ1066]
 gi|55736653|gb|AAV60295.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus LMG
           18311]
 gi|55738544|gb|AAV62185.1| DNA topoisomerase IV (subunit C) [Streptococcus thermophilus
           CNRZ1066]
          Length = 839

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 266/796 (33%), Positives = 421/796 (52%), Gaps = 43/796 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 23  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 82

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 83  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 142

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 143 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 202

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 203 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 262

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 263 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 322

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 323 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARS 382

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 383 KFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENL---------------- 426

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE  +L  +I     I+  
Sbjct: 427 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGD 476

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR 
Sbjct: 477 ERTLFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 536

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A +        V  RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 537 SPRSFNASK-----IEEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 591

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   +     +  TK G ++R +  +F      
Sbjct: 592 KDLGEHLSQTITNFSKDEEVLYAEILDD---FETGTYLATTKLGQIKRFERKEFTPWRTY 648

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    +++   T  Q +DI++ T+ G  +RF    +    G  +VGV+ I+
Sbjct: 649 KSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEV-PVVGAKAVGVKAIN 707

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSA---QRRLISGDTEEITSLKNDSSVEGNI 785
           L   D+V ++ +          +   +K ++     R   +G   ++             
Sbjct: 708 LKDDDKVQAVFVANTQSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLRELKTKPHRVFT 767

Query: 786 SEERCQELKLKEQFIL 801
           +     E    E  +L
Sbjct: 768 AGPVFTENAGAEIDLL 783



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/527 (12%), Positives = 155/527 (29%), Gaps = 34/527 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + S
Sbjct: 256 RVVVRSRTEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRS 315

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D+      +  +  +++Q      ++ +       +G   I +   +   
Sbjct: 316 GLRIAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRR 375

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I               +   E L     +       I          D      +    
Sbjct: 376 DIIVARSKFDKEKAEKRLHIVEGLIRVISILDE---VISLIRASENKSDAKENLKVSYDF 432

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 + +  L  +      LF           
Sbjct: 433 SEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLF----------- 481

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +     +   K   N             +              V  T+ G V+R   
Sbjct: 482 --NVMKRELRDIKKKFGNDRRSELQAETK-TIEIDTASLIVEEETYVSITRGGYVKRTSP 538

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-- 720
             F          +     D+++ V+       +L+ T     +  PI  +     ++  
Sbjct: 539 RSFNASKIEE---VGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLG 595

Query: 721 ---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S  +   + +K ++V+   I+   +         +  +    R          S   
Sbjct: 596 EHLSQTIT--NFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSV 653

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                 + S+       ++   I+ +++KG+  R ++ +  +      G++A ++   ++
Sbjct: 654 KYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDK 713

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
               V    V +     L++ + +L RV  ++I  A RA +G+ +  
Sbjct: 714 ----VQAVFVANTQSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLR 756


>gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO]
          Length = 764

 Score =  627 bits (1616), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/836 (33%), Positives = 450/836 (53%), Gaps = 93/836 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  +L D+ K+TVD   N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P   L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGILQGKDEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QIV+TEIPY+VNKA +++K+ E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++   P +  L  IL++++  R++V+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDHMTPHQVGLKDILRSYIEHRKQVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A++ L+            
Sbjct: 362 KRSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT     +++ E  SL  +I E   I
Sbjct: 410 --------------DVFQFTEEQAEAIVTLQLYRLTNTDITELQKESESLIAQITELNKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYV 548
           LS+   L  ++K+EL  VK    + R T I + + +++   +  + +ED++V+V+  GYV
Sbjct: 456 LSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + MR+ D++     +ST   VL  ++   V    V  LP 
Sbjct: 516 KRTSLRSYSASKPE-----EIGMREGDYLLYSGELSTLDHVLLITNKANVIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +S        +I+     +        VF +K+G +++ ++++F   
Sbjct: 571 LKWKDAGEHISQTIS--NLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLD-SRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V         D+ L T  G  +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDV-PVVGAKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L  GD++I+  +VL                                        
Sbjct: 688 GVKSMNLKDGDRIINGLLVLAEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            I+ V+++G  KR  + +   ++R+ +G+      K    
Sbjct: 714 -----------------IVIVTQRGAVKRMLAQEISQTSRAKRGVTVMRELKKIRT 752



 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 92/258 (35%), Gaps = 14/258 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  T+ G V+R  L  +          + +   D +L     +  + +LL T     + 
Sbjct: 506 IVSVTREGYVKRTSLRSYSASKPEE---IGMREGDYLLYSGELSTLDHVLLITNKANVIY 562

Query: 708 FPISAIRVFAGRNSVGVRGI---SLAKGDQVISM----AIVLHADADYDERICYMKHMSA 760
            P+  +     +++         +L+  + ++++     I       +  +   +K    
Sbjct: 563 RPVHELPDLKWKDAGEHISQTISNLSVDESILAVFPYQKIQAEKTFVFISKNGLIKQTRM 622

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                    +           E +       +       +  V+ +G G R    D  + 
Sbjct: 623 TEFEPWRTYKSRPLSCMKLKAEEDELIAVYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVV 682

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKG 879
                G+++ ++   + I  +  +  + + D  I++V+ +G + R+   EI   SRA +G
Sbjct: 683 GAKAAGVKSMNLKDGDRI--INGLLVLAEGDTPIVIVTQRGAVKRMLAQEISQTSRAKRG 740

Query: 880 VVIFS-TAKDERVVSVER 896
           V +     K   V+S+ R
Sbjct: 741 VTVMRELKKIRTVLSICR 758



 Score = 42.5 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + + +I+    L+     D+ +  +     +    +  +  +T+++++       ++  
Sbjct: 440 KESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSARLTTIEDEIEEIKIDTQ-- 497

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              L  +E  I++V+ +G+ KRTS   +  S     G+R        E   L+    ++ 
Sbjct: 498 --VLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMR--------EGDYLLYSGELST 547

Query: 850 NDQIILVSDKGTLIRVPVNEIR 871
            D ++L+++K  +I  PV+E+ 
Sbjct: 548 LDHVLLITNKANVIYRPVHELP 569


>gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
 gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC
           11741]
          Length = 808

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 289/898 (32%), Positives = 465/898 (51%), Gaps = 99/898 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RV
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  
Sbjct: 302 VIELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+            
Sbjct: 362 RRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I    +I
Sbjct: 412 ----------------FSFTEAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I++EL ++  +  + R T I + +    +E E  + +ED+++ VSH GYV
Sbjct: 456 LANPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  + A            ++DED+     +V+T + +  F++ G +    +  +  
Sbjct: 516 KRSSLRSFNASDNDEN-----GLKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   + L   E    ++     ES   +   + ATK G +++ KL+D    
Sbjct: 571 SRWKDTGEHLSQTVGLGNDE---YVLNAFVFESIDQDAKFLIATKEGYIKQVKLADLKPG 627

Query: 669 NRSGKIA---MKLDSR-DEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 A   +KL +  DE++SV +  + ++ +   +  G  +R+ +  +    G  + G
Sbjct: 628 RTYKTRASRYVKLKTDADEVISVSQVESDKSQVFCASYTGYGLRYSLDEV-PTNGALAAG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L   D + ++ +V  +D                                      
Sbjct: 687 VKCMDLR-DDTLANVILVSESD-------------------------------------- 707

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E  ILT  ++G  K+    D  ++ R+ +G++     K      ++ 
Sbjct: 708 -------------EVSILT--QRGSYKKMKVADVPLTTRARRGVQILRELKTKPH-RIIF 751

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRES 900
              V  N +++L+   G    V   + ++  R + G  I   A+ + + ++  +I E 
Sbjct: 752 AELVQTNQELVLLLSDGKQETVKPEDHQLNDRYSNGSFIVD-AETDTIENIYTKIIED 808


>gi|227510436|ref|ZP_03940485.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190088|gb|EEI70155.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 812

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/828 (33%), Positives = 442/828 (53%), Gaps = 45/828 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIVV+EIPY+VNKA ++++I EL   K++  I+++RD+SDR+G  +VIE
Sbjct: 242 TKIEPLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKKVDGISEVRDQSDREGMSIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F++EV+ +RT
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQQEVIKKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+ 
Sbjct: 408 ------------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL ++      PRRT I +    + +  +  I  ED+VV VSH GY+KR 
Sbjct: 456 PKELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A            ++DED+   +  ++    +  F+S G +    ++ +     
Sbjct: 516 SIRSYKASGNEN------GLKDEDYPIFMRQMNARDHLFMFTSKGNLIYRPIFEIADVRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I     F   +        + AT  G+++R KL+D       
Sbjct: 570 KDTGEHISQTIGLDNDEEIIGTFAFSSLK---EKGVFLIATDDGHIKRTKLTDLAPGRTY 626

Query: 672 GKIAM---KLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            K A    KL   +  +       + D    +LL +KLG  +R+ I  +    G  + GV
Sbjct: 627 KKHAYMYEKLKDPESRIVAIDYLADPDASGKLLLISKLGLALRYGIDEV-PINGARTTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +LA GD + ++ +V   D              A + + +        +      + +
Sbjct: 686 KSQNLADGDVITNLKLVNDDDVIAIVTQRGAFKKLAVKEIPATSRARKGVMILRELKQNS 745

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                   +  ++  +  +++          +F +  R   G    DV
Sbjct: 746 HRVVDFTVIDNEDTPLEVLTDHQRVHDILPNEFSLGGRYSNGSFVIDV 793



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 14/221 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM---AIVLHAD 745
               E+ +++ +  G   R   S+IR +    + G     L   D  I M       H  
Sbjct: 496 IIPDEDVVVMVSHDGYIKR---SSIRSY---KASGNEN-GLKDEDYPIFMRQMNARDHLF 548

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               +     + +     +   DT E  S       +  I          ++   L  ++
Sbjct: 549 MFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEKGVFLIATD 608

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTL 862
            G  KRT   D     R+ K          +    +VA+  + D D   +++L+S  G  
Sbjct: 609 DGHIKRTKLTDLAP-GRTYKKHAYMYEKLKDPESRIVAIDYLADPDASGKLLLISKLGLA 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R  ++E+ I    T GV   + A  + + +++ + + +++
Sbjct: 668 LRYGIDEVPINGARTTGVKSQNLADGDVITNLKLVNDDDVI 708


>gi|160914999|ref|ZP_02077212.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
 gi|158432798|gb|EDP11087.1| hypothetical protein EUBDOL_01006 [Eubacterium dolichum DSM 3991]
          Length = 835

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 286/874 (32%), Positives = 442/874 (50%), Gaps = 99/874 (11%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +   I +  + + M + + +Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K
Sbjct: 9   EHDNSTIIATPLEEIMGSRFGSYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNLWDK 68

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +R   I+ QGN GS+D DP AA R
Sbjct: 69  AYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRHPQIDMQGNNGSIDDDPAAAMR 128

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K + +LL D+ KDTV +  N+D +  EP VL A YPN+LVNG  GIA G ATN
Sbjct: 129 YTEARLGKISEYLLKDIEKDTVTWSLNFDDTAYEPTVLPASYPNLLVNGITGIAAGYATN 188

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E +   +  I NP   L+ LME + GPDFPTGA++ G  GIK+A+ TG+G I+
Sbjct: 189 IPPHNLNEAIQATIYRIRNPKCSLEELMEYMHGPDFPTGAIVQGIDGIKDAFRTGKGRIM 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    IE+T    +QI+V EIPY+V K+ M++KI E+   K+I  I D+RDESDR G R
Sbjct: 249 IRSKVSIEQTKT-IQQIIVHEIPYEVVKSNMVKKIDEVRLNKKIEGILDVRDESDRNGLR 307

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VVI++K+ A A +ILN LY+ T LQ  ++ N+VA+   +P +  L+ +L AF+A R EV+
Sbjct: 308 VVIDIKKDADAQLILNYLYKNTDLQVSYNYNVVAIVNKRPVQMGLVAMLDAFIAHRVEVI 367

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +R++Y L+K   R H+L GL  A++ LDE++ +IR S +   ++R++++          
Sbjct: 368 EKRSRYDLDKKEKRCHILEGLIRAISVLDEIIALIRSSKDKADSKRKIIE---------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AI+ +RL RL+      ++ E   L  EI     
Sbjct: 418 ----------------AFSFSEEQAEAIVTMRLYRLSSTDITLLQEESEQLQKEIAHLHC 461

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           IL     L  ++ QEL +V     TPR T        + ++    I  E ++ T+S  GY
Sbjct: 462 ILDDPKVLRKVMIQELKAVNTAFPTPRLTKIEETIEEIVIDKLAMINEEQVMFTLSRDGY 521

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            KRV L  Y A        S   +++ D +     VST   +LFF+++G      V+ L 
Sbjct: 522 AKRVSLRSYNASSD-----SLCGLKEGDRLIGCGEVSTLDKILFFTNMGTYGYVPVYELE 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G  L   + +   E+IT            +  YVV  T+ G ++++ LS++  
Sbjct: 577 EAKWKDVGTHLNAGIRMRGEEKITDAFVVKSF---QSQAYVVSVTRMGLIKKSALSEYEV 633

Query: 668 INRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +  ++ MKL   DE++        ++I + ++ G  VR+P+  + + + R S GV+ 
Sbjct: 634 SRNNKTMSNMKLLDGDEVIRSFIAYDGDEIFIASETGFAVRYPLDMVPLTSPR-SKGVKA 692

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D VI  A + H D                                         
Sbjct: 693 MKLV--DDVIGDACIYHQD----------------------------------------- 709

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      + ++  S+ G  KR    +  I+ R  KG         ++   +  +  
Sbjct: 710 ----------NKQLVVFSKNGAVKRMKLSEIEITGRPAKGNMLCK-KVKSKPYKIAHLQM 758

Query: 847 VNDNDQIILVSDKGTLIRVPV--NEIRIASRATK 878
            + ND++ ++   G  I   V   +I + ++   
Sbjct: 759 YDLNDEVYIM---GKDI-CSVVSKDIALMNKEAT 788



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 81/218 (37%), Gaps = 15/218 (6%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
               +E  +   ++ G   R     +R +   N+       L +GD++I    V   D  
Sbjct: 505 AMINEEQVMFTLSRDGYAKRVS---LRSY---NASSDSLCGLKEGDRLIGCGEVSTLDKI 558

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSV---EGNISEERCQELKLKEQFILTVS 804
                           L     +++ +  N       E  I++    +    + ++++V+
Sbjct: 559 LFFTNMGTYGYVPVYELEEAKWKDVGTHLNAGIRMRGEEKITDAFVVKSFQSQAYVVSVT 618

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
             G  K+++  ++ + +R+ K +    +        ++  F   D D+I + S+ G  +R
Sbjct: 619 RMGLIKKSALSEYEV-SRNNKTMSNMKLLDG---DEVIRSFIAYDGDEIFIASETGFAVR 674

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            P++ + + S  +KGV       D  V+    I   + 
Sbjct: 675 YPLDMVPLTSPRSKGVKAMKLVDD--VIGDACIYHQDN 710


>gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/883 (31%), Positives = 453/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|71903357|ref|YP_280160.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
 gi|71802452|gb|AAX71805.1| topoisomerase IV subunit A [Streptococcus pyogenes MGAS6180]
          Length = 821

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 278/890 (31%), Positives = 441/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKTDAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 573 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 629

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 630 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 689 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 749 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 770

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 771 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|325686242|gb|EGD28285.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 827

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 272/891 (30%), Positives = 434/891 (48%), Gaps = 96/891 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +      ++++  I  E + V +S  GY
Sbjct: 456 ILADPKVLQKEIIKELRAVKKEFGSDRRSEISDEKARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G         +             +  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNGLPETDRVVYEGSLSTLTN-----LYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    NL  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALD--DPNLAFLLATNDGFIKQVALADLQP 628

Query: 668 INR---SGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +        +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGEVPQVGARAA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 689 -GVKSINLKEDDYVVACLVTDPQYEDLLKVGL---------------------------- 719

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                V+++G  K+        ++R+ +G+      K      +
Sbjct: 720 ---------------------VTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPH-RI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           VA+     N ++IL++      +IR   ++  +  R + G  +     D  
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTDGE 806



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 81/215 (37%), Gaps = 18/215 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY 754
           L ++ G   R   S++R F      G  G  L + D+V+   S++ + +     +     
Sbjct: 509 LISRDGYIKR---SSMRSFQS-TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLI 562

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGKRTS 813
            + +         D  +  S +   + + +I      E L       L  +  GF K+ +
Sbjct: 563 YRPVHELVESKWKDVGQHLSQELGLAADESIIRVFALEALDDPNLAFLLATNDGFIKQVA 622

Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
             D + +    +R+   I A  +   +     V +   ++  +I L +++   ++  + E
Sbjct: 623 LADLQPTRTYKSRA---IMAMKMKGEDSRVITVDLVKTSEKREITLFTNQAFALKYDIGE 679

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +        GV   +  +D+ VV+   + + +  D
Sbjct: 680 VPQVGARAAGVKSINLKEDDYVVA-CLVTDPQYED 713


>gi|290580371|ref|YP_003484763.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
 gi|254997270|dbj|BAH87871.1| topoisomerase IV subunit A [Streptococcus mutans NN2025]
          Length = 812

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 269/794 (33%), Positives = 415/794 (52%), Gaps = 40/794 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 ADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + IE 
Sbjct: 181 IDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTEIEN 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV TEIPY+VNKAA+++KI ++    ++  IA++RDESDR+G R+ IELK+ A
Sbjct: 241 LKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               ILN L++YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+K+   
Sbjct: 301 DEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARSKFDKE 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                     
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------------- 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   SE Q  AI+ L+L RLT      + NE   L   I     I+     + 
Sbjct: 400 -----KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +   PR + +      ++++    IV E+  V+V+  GY+KR     +
Sbjct: 455 NVMKRELREVKKKFGNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A          +  RD+D V  +    T   +L F++LG V    +  L     +  G+
Sbjct: 515 NAS-----TVEELGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIGE 569

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L   ++    +     +   +    +       AT  G ++R +  D          A+
Sbjct: 570 HLSQNITNFATDEEILYVDLVD---HFEEGTYYAATSLGQIKRFERRDLTPWRSYKSKAV 626

Query: 677 ---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
              KL   D+ +   +  + +D++L T  G  +RF I  +    G  + GV+ I+L +GD
Sbjct: 627 KYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEV-PIVGPKAAGVKAINLKEGD 685

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            + +  I          +   +K MS     ++   +    +  D   + +         
Sbjct: 686 SLAAAFIANTDSIYILTQRGSLKRMSTNLIPVTSRAKRGLQVLRDLKSKPHRVFAAGPVF 745

Query: 794 KLKEQFILTVSEKG 807
                 I   +  G
Sbjct: 746 SEAAGEIDLFTTVG 759



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 70/527 (13%), Positives = 160/527 (30%), Gaps = 34/527 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  V   +   V     V +I     N +      ++   +  
Sbjct: 229 RVVVRSRTEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDRE 288

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D+      +     +++Q      ++ +       +G   +     +   
Sbjct: 289 GLRIAIELKKDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRK 348

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I               +   E L     +       I          D      +    
Sbjct: 349 DIIVARSKFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 405

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 + +T L                 +Y   
Sbjct: 406 SEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLN--------AIIGDERTMYNVM 457

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +  T  +              V  T+ G ++R   
Sbjct: 458 KRELREVKKKFGNP------RLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSP 511

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-----RVFA 717
             F          +     D+++ ++      ++L+ T LG  +  PI  +     +   
Sbjct: 512 RSFNASTVEE---LGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIG 568

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S  +   + A  ++++ + +V H +         +  +    R          S   
Sbjct: 569 EHLSQNIT--NFATDEEILYVDLVDHFEEGTYYAATSLGQIKRFERRDLTPWRSYKSKAV 626

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +      ++  +   +K   ++ ++ +G+  R +  +  I      G++A ++ +   
Sbjct: 627 KYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEVPIVGPKAAGVKAINLKEG-- 684

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +L A F  N  D I +++ +G+L R+  N I + SRA +G+ +  
Sbjct: 685 -DSLAAAFIAN-TDSIYILTQRGSLKRMSTNLIPVTSRAKRGLQVLR 729



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 79/269 (29%), Gaps = 39/269 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S   A       EI +     +E   +  T+ G   R 
Sbjct: 452 TMYNVMKRELREVKKKFGNPRLSELQAET--QTIEIDTASLIVEEETYVSVTRGGYIKRT 509

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S +     R             D VI   +           +      + +  
Sbjct: 510 SPRSFNASTVEELGKR-----------DDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHE 558

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TSS 814
              +   +  E  S    +                +E      +  G  KR      T  
Sbjct: 559 LADIRWKEIGEHLSQNITNFATDEEILYVDLVDHFEEGTYYAATSLGQIKRFERRDLTPW 618

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             ++      K ++   +    +   ++ + P+  +D ++L++ +G  +R  + E+ I  
Sbjct: 619 RSYKS-----KAVKYAKL--KGDDDQVIRISPIKLDD-VMLITARGYALRFNIEEVPIVG 670

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIV 903
               GV   +  + + + +   I  ++ +
Sbjct: 671 PKAAGVKAINLKEGDSLAA-AFIANTDSI 698


>gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
 gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21]
          Length = 819

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/905 (31%), Positives = 443/905 (48%), Gaps = 114/905 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T+ G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTRLGQIKRFERQEISPWRT 626

Query: 671 SGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL + D+ +      Q  D++L T  G  +RF I+ +    G  + GV+ +
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDV-PVVGSKAAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++S  I                                               
Sbjct: 686 NLKDSDHIVSAFIANTTSL----------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG--- 839
                      ++LT   +G  KR +      ++R+ +G++     K       + G   
Sbjct: 705 -----------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPVY 751

Query: 840 --------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                    L +    ++ D  +L  +S  G +  V +++   + R + G  +     DE
Sbjct: 752 LEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDE 811

Query: 890 RVVSV 894
            V SV
Sbjct: 812 EVFSV 816


>gi|114152112|sp|P0C1U9|PARC_STAAU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1777318|dbj|BAA11085.1| DNA topoisomerase IV GrlA subunit [Staphylococcus aureus]
          Length = 800

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VFEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
 gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B]
          Length = 819

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/905 (31%), Positives = 441/905 (48%), Gaps = 114/905 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTSLGQIKRFERQEISPWRT 626

Query: 671 SGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL + D+ +      Q  D++L T  G  +RF I+ +    G  + GV+ +
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDV-PVVGSKAAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++S  I                                               
Sbjct: 686 NLKDSDHIVSAFIANTTSL----------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG--- 839
                      ++LT   +G  KR +      ++R+ +G++     K       + G   
Sbjct: 705 -----------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPVY 751

Query: 840 --------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                    L +    ++ D  +L  +S  G +  V +++   + R + G  +      E
Sbjct: 752 LEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISGE 811

Query: 890 RVVSV 894
            V SV
Sbjct: 812 EVFSV 816


>gi|116511813|ref|YP_809029.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107467|gb|ABJ72607.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 824

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 272/887 (30%), Positives = 456/887 (51%), Gaps = 73/887 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P  D++ +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKADVEKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+++R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIIKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHIVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +  +E E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFAKPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +          +  RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASS-----ALEEIGKRDDDELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDVRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
           +  G+ L   LS    +     +   +  +  N   +V  T++G ++   R   S +   
Sbjct: 571 KDIGEHLSQSLSNFSSDEKVIYVQIVDAFAGEN---LVVVTRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + +  Q  D+++ ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGNDDEIVLISPVQFTDLMIISENGYALRFNLDDVPVLGARAA-GVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++ +   V         +  ++K +  +    +        +        +    
Sbjct: 687 LKNDDKIKAAFFVNSNSWYLLTQRAFIKRVKTEDIPATSRANRGLQVLRTLKTNNHTVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +   L  +E+          F  +       +A    +              
Sbjct: 747 AGLINSTADLSAL--TEE-------LDLFSQA-------KAPATKET------------- 777

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 778 -DEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|322372519|ref|ZP_08047055.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
 gi|321277561|gb|EFX54630.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C150]
          Length = 818

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 260/770 (33%), Positives = 411/770 (53%), Gaps = 40/770 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+  +KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKDKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNAS-----TIDEVGKRDDDDLILVQQAKTTQHLLMFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   +     + ATK G ++R +  +F      
Sbjct: 571 KDLGEHLSQTITNLSKDEEVLYAEILDD---FEAGTYLAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +   T  Q +D+++ T+ G  +RF    +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKDASDCIVTVTPIQLDDVMIITQKGYALRFNADEV-PVVGAKATGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           L   D V ++ +          +   +K ++      +        +  +
Sbjct: 687 LKDDDTVQAVFVANTQSFYLLTQRASLKRVATADIPQAKRAGRGLQVLRE 736



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
                V  T+ G V+R     F          +     D+++ V+       +L+ T   
Sbjct: 499 EEETYVSITRGGYVKRTSPRSFNASTIDE---VGKRDDDDLILVQQAKTTQHLLMFTNQA 555

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             +  PI  +     ++     S  +   +L+K ++V+   I+   +A        +  +
Sbjct: 556 NVIYRPIHELPDIRWKDLGEHLSQTIT--NLSKDEEVLYAEILDDFEAGTYLAATKLGQI 613

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
               R          S     +   + S+       ++   ++ +++KG+  R ++ +  
Sbjct: 614 KRFERKEFTPWRTYKSKSVKYAKLKDASDCIVTVTPIQLDDVMIITQKGYALRFNADEVP 673

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +      G++A ++   +     V    V +     L++ + +L RV   +I  A RA +
Sbjct: 674 VVGAKATGVKAINLKDDDT----VQAVFVANTQSFYLLTQRASLKRVATADIPQAKRAGR 729

Query: 879 GVVIFS 884
           G+ +  
Sbjct: 730 GLQVLR 735


>gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316]
 gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909]
 gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
 gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909]
 gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515]
          Length = 819

 Score =  626 bits (1615), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/905 (31%), Positives = 442/905 (48%), Gaps = 114/905 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTSLGQIKRFERQEISPWRT 626

Query: 671 SGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL + D+ +      Q  D++L T  G  +RF I+ +    G  + GV+ +
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDV-PVVGSKAAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++S  I                                               
Sbjct: 686 NLKDSDHIVSAFIANTTSL----------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG--- 839
                      ++LT   +G  KR +      ++R+ +G++     K       + G   
Sbjct: 705 -----------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPVY 751

Query: 840 --------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                    L +    ++ D  +L  +S  G +  V +++   + R + G  +     DE
Sbjct: 752 LEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDE 811

Query: 890 RVVSV 894
            V SV
Sbjct: 812 EVFSV 816


>gi|295396856|ref|ZP_06806984.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
 gi|294974882|gb|EFG50581.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aerococcus viridans ATCC
           11563]
          Length = 820

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 291/897 (32%), Positives = 456/897 (50%), Gaps = 99/897 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G   +  + K 
Sbjct: 3   EIQKLTLEEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILFAMFQEGNTSSSNFRKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G V+G YHPHG++++Y+A+ RM+QDW  R +L+E  GN GS+DGD  AA RYTE R
Sbjct: 63  AKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKNREVLVEMHGNNGSMDGDSAAAMRYTEAR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL DL KDTV+   N+D + +EP VL A +PN+LVNG  GI+ G AT IP HN
Sbjct: 123 LSKIADELLRDLDKDTVEMILNFDDTAEEPTVLPAGFPNLLVNGATGISAGYATEIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D    +ID+P+  ++ LM+ + GPDFPTGA+I G+  +K AY +GRG +V+R   
Sbjct: 183 LGEIIDATTYLIDHPNATINKLMDFVPGPDFPTGAIIQGKEELKKAYTSGRGKVVVRSKH 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIE   G +E+IV+TEIPY+VNKA ++ ++ EL   + I  I ++RDE+DR G ++VIEL
Sbjct: 243 HIETDRGGKEKIVITEIPYEVNKANLVRRMDELRLNRSIDGIQEVRDETDRNGLQIVIEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ AS+D ILN  Y+ + LQ  ++ NMVA+N  +PE   +   L A++  R E++ RRT 
Sbjct: 303 KKDASSDAILNYFYKNSDLQINYNFNMVAINDQRPELVGIREALNAYIGHRYEIIRRRTT 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNKA+ R H++ GL  A++ LD+V+  IR S N   +R  L++               
Sbjct: 363 FDLNKAQRRLHIVDGLVKAMSILDQVIATIRNSKNKSDSRYNLIE--------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          SE Q  AI+ L+L RLT      + NE   L  +I     ILS  
Sbjct: 408 -----------AFDFSEAQAEAIVSLQLYRLTNTDVTALENERLQLNEDIAAYQAILSDD 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYVKRVP 552
             L G +K EL ++K    + RRT I + + ++  +    I  ED+VV V+  GY+KR  
Sbjct: 457 KVLYGRMKSELKAIKKAYASERRTEIQDEIQEVIVKKQLLIPEEDVVVVVTRGGYIKRSS 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  ++A          V +RD D V  L  +ST   ++F ++ G    + V+ L     +
Sbjct: 517 LRSFKASG-----IEEVGLRDGDHVQFLEKMSTLDQLVFITNKGNYIFQPVYELQDIRWK 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ +   ++    E I  +  + E+        ++ A+  G +++  LS+F +     
Sbjct: 572 DLGEHVSQRIAFASDESIIGVFKYDENSKDN----LLLASAAGMIKQTALSEFKEFRGYK 627

Query: 673 KI---AMKLDSR-DEILSVETCTQEND-----ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                AM L S  D+++ V       D     ++L T  G  +R+ I  I    G  + G
Sbjct: 628 NKSSLAMNLSSDTDQVIGVYRIDGATDQSQAQVILVTHFGFTLRYSIDEI-SIIGVRAKG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ I+L + D V+ ++                                            
Sbjct: 687 VKSINLKQDDYVVGLS-------------------------------------------- 702

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                    +      ++ V+++G  KR    +  +  R+ +G+ A    K N     VA
Sbjct: 703 ------YAAVPDDNLQLMMVTQRGHMKRLKWAEINVLGRAKRGLVALKELKSNPH-RFVA 755

Query: 844 VFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            F V D +QI  +V+ +         ++ IA+R + G ++       ++  V  + +
Sbjct: 756 AFEVIDTNQIFEVVTSQSHREMFRAGDVAIANRYSNGSMLVDEKDHGQISLVTPLID 812



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 114/292 (39%), Gaps = 22/292 (7%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           +     +   +         VV  T+ G ++R+ L  F          + L   D +  +
Sbjct: 483 QDEIQEVIVKKQLLIPEEDVVVVVTRGGYIKRSSLRSFKASGIEE---VGLRDGDHVQFL 539

Query: 688 ETCTQENDILLTTKLGQCV---RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           E  +  + ++  T  G  +    + +  IR       V  R I+ A  + +I    V   
Sbjct: 540 EKMSTLDQLVFITNKGNYIFQPVYELQDIRWKDLGEHVSQR-IAFASDESIIG---VFKY 595

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK---------L 795
           D +  + +         ++    + +E    KN SS+  N+S +  Q +           
Sbjct: 596 DENSKDNLLLASAAGMIKQTALSEFKEFRGYKNKSSLAMNLSSDTDQVIGVYRIDGATDQ 655

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +  ++ V+  GF  R S  +  I     KG+++ ++ + + +  L      +DN Q+++
Sbjct: 656 SQAQVILVTHFGFTLRYSIDEISIIGVRAKGVKSINLKQDDYVVGLSYAAVPDDNLQLMM 715

Query: 856 VSDKGTLIRVPVNEIRIASRATKG-VVIFSTAKDER--VVSVERIRESEIVD 904
           V+ +G + R+   EI +  RA +G V +     +    V + E I  ++I +
Sbjct: 716 VTQRGHMKRLKWAEINVLGRAKRGLVALKELKSNPHRFVAAFEVIDTNQIFE 767


>gi|297571343|ref|YP_003697117.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931690|gb|ADH92498.1| DNA topoisomerase (ATP-hydrolyzing) [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 804

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/836 (32%), Positives = 408/836 (48%), Gaps = 86/836 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   + I  + +++EM+NS+L Y+ +VI  RA+PD RDGLKPV RRILF M  MG++ ++
Sbjct: 3   QTHTEHIMDIDVSEEMRNSFLEYSYSVIYSRALPDARDGLKPVQRRILFQMDSMGLKPDR 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK +R+ G+VMG+ HPHG+AAIYDA+ R+AQD+SLRL  ++G GNFGS D D PAA R
Sbjct: 63  GHVKSSRVVGDVMGRLHPHGDAAIYDAMVRLAQDFSLRLPFVDGHGNFGSPD-DGPAAPR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+  AA  +   LG+D VD  PNYD ++QEP VL A  P++LVNG  GIAVGMATN
Sbjct: 122 YTEVRMAPAALAMTASLGEDVVDMVPNYDNTYQEPEVLPAAIPSLLVNGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EV+ G   +++NPD  L+ LM  I GPD P G  I+G  GI+ AY TGRG   
Sbjct: 182 MAPHNLNEVIAGARFLLENPDACLEELMRYIPGPDLPDGGKIVGIDGIRQAYKTGRGIFR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
            R  +HIE  S  ++ I+ TE+PY      ++EKI + V  K++  I+ +++ +D   G 
Sbjct: 242 TRATAHIENVSPRKKGIIFTELPYLTGPEKIIEKIKDGVSSKKLQGISGVQNLTDRHHGT 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+K   + + +L  LY++T L+  F +N VAL   +P    L  IL+ F+  R  V
Sbjct: 302 RLVVEVKNAFNPEAVLAALYQHTPLEESFGINNVALVEGQPRTMGLKEILQVFLDHRRSV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR ++ L KA+DR H++ GL IA+ ++D+V+ IIR S +  TA   L+          
Sbjct: 362 TKRRCEFRLRKAQDRLHLVEGLLIAIVDIDDVIAIIRSSEDSATAANRLIS--------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q   ILELRL RLT   + ++  E NSL   I E L
Sbjct: 413 -----------------VFDLSQPQADYILELRLRRLTKFSQIELETERNSLQETIDELL 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-----REDMVVTVS 543
            IL S  R+  +I  EL  V  +  TPRRT ++E     + +          +   V +S
Sbjct: 456 AILGSEDRMRQLISTELADVARQYGTPRRTVLLEADAVQKSKANAPKLKITDDPCRVLLS 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R+          G   R        D +  +   +  + +   ++ G +++  V
Sbjct: 516 ATGKIARIV--------GGEPPRREGPRAQHDALASVVSTTNLSDIGVVTTAGNIHRLNV 567

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTI-MPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             +P         +L     L     +     P        ++  +  AT  G ++R  L
Sbjct: 568 LDIPAMPDTESAPSLAAGAQLTDLLLMEPNEEPLAIISLEESDTVLTLATAQGKIKRVAL 627

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 N+S   A+ L   D ++        + I+L T   Q +RF  +A+R   GR+  
Sbjct: 628 DP---PNKSQFDAITLLDGDRVIGAGVSGDTDVIVLVTSDAQLLRFDANAVRP-QGRSGQ 683

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G+ GI +A G QVI++ IV + D      +       A                      
Sbjct: 684 GIAGIRVADGAQVIALGIVPNDDLAGHGVVTIASSSDALPG------------------- 724

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                +  G  K T    +    R   G+RA    +  + 
Sbjct: 725 ---------------------TTAGSAKVTPLDRYPAKGRGTGGVRAQRYLRDEDT 759



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 78/262 (29%), Gaps = 44/262 (16%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           ++G  RR  L +   + +S   A KL   D+   V            +  G+  R     
Sbjct: 478 QYGTPRRTVLLEADAVQKSKANAPKLKITDDPCRVLL----------SATGKIARIVGGE 527

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G  +           D + S+    +             H      + +    E 
Sbjct: 528 PPRREGPRAQ---------HDALASVVSTTNLSDIGVVTTAGNIHRLNVLDIPAMPDTES 578

Query: 773 TSLKNDSSVEGNISEERCQELK------LKEQFILT-VSEKGFGKRTSSY-----DFRIS 820
                  +   ++      E         +   +LT  + +G  KR +        F   
Sbjct: 579 APSLAAGAQLTDLLLMEPNEEPLAIISLEESDTVLTLATAQGKIKRVALDPPNKSQF--- 635

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                   A  +   +    ++      D D I+LV+    L+R   N +R   R+ +G+
Sbjct: 636 -------DAITLLDGDR---VIGAGVSGDTDVIVLVTSDAQLLRFDANAVRPQGRSGQGI 685

Query: 881 VIFSTAKDERVVSVERIRESEI 902
                A   +V+++  +   ++
Sbjct: 686 AGIRVADGAQVIALGIVPNDDL 707



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 32/267 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R    +     R G  A      D + SV + T  +DI + T  G
Sbjct: 507 DDPCRVLLSATGKIARIVGGEP--PRREGPRA----QHDALASVVSTTNLSDIGVVTTAG 560

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-----DYDERICYMKHM 758
              R  +  I       S      SLA G Q+  + ++   +        +E    +   
Sbjct: 561 NIHRLNVLDIPAMPDTESAP----SLAAGAQLTDLLLMEPNEEPLAIISLEESDTVLTLA 616

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
           +AQ ++     +     + D+    +        +      I+ V+      R  +   R
Sbjct: 617 TAQGKIKRVALDPPNKSQFDAITLLDGDRVIGAGVSGDTDVIVLVTSDAQLLRFDANAVR 676

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDND-------------QIILVSDKGTLIRV 865
              RSG+GI    V+       ++A+  V ++D               +  +  G+    
Sbjct: 677 PQGRSGQGIAGIRVADG---AQVIALGIVPNDDLAGHGVVTIASSSDALPGTTAGSAKVT 733

Query: 866 PVNEIRIASRATKGVVIFS-TAKDERV 891
           P++      R T GV        ++ +
Sbjct: 734 PLDRYPAKGRGTGGVRAQRYLRDEDTL 760


>gi|284024356|ref|ZP_06378754.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           132]
          Length = 800

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|301066455|ref|YP_003788478.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
 gi|300438862|gb|ADK18628.1| DNA topoisomerase IV subunit A [Lactobacillus casei str. Zhang]
          Length = 814

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 290/901 (32%), Positives = 448/901 (49%), Gaps = 96/901 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  + ++ +P  DLD LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVINAVLYLLKHPTADLDTLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRINKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+V  R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQIAYNFNMVAIADMQPKLLGLKAMLEAYVEHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RFDLNKAAARQHIVEGLIKMLSILDQVIAAIRASKDKGDAKRNLVKK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      ++ E   L   I E  D+L+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQKEAAQLAKAIAEYQDVLAR 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I+ EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PAARDRVIEGELKRIAKEYGDDRRSSIQAKIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G V    V  +     
Sbjct: 517 SLRSYQAVDPADN-----GLKANDLAIFTGELSTLQHLYIVTNAGNVIYRPVHEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKV---LAVFAFDQLDGAGSFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 671 --SGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                +AMKL     I++    T +   D+ + ++    + FP+S +     R + GV+ 
Sbjct: 629 KSKPMMAMKLKDPAAIVTNAYFTTDQQQDVFVVSRHAYGLTFPLSDVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V                                             
Sbjct: 688 MDLKPDDEVVNFILVKDPTTAKVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  K+ +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKKMALSEVGEMSRARRGLLVLRELKRDPH-RIVAMMS 755

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D  ++ +++D G +  +   +     R + G  +  T    + V V+   + E  D+ 
Sbjct: 756 VDDATRLNVLTDTGKVTTLNPVQHPAGDRYSNGSFVIDTDVLGKPVFVQ--TKEEPADQV 813

Query: 907 E 907
           E
Sbjct: 814 E 814


>gi|49483548|ref|YP_040772.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295427869|ref|ZP_06820501.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81651177|sp|Q6GH50|PARC_STAAR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|49241677|emb|CAG40365.1| topoisomerase IV subunit A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295128227|gb|EFG57861.1| DNA topoisomerase IV [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 800

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 452/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|125624338|ref|YP_001032821.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493146|emb|CAL98110.1| topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300071122|gb|ADJ60522.1| DNA topoisomerase IV subunit A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 824

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 274/887 (30%), Positives = 457/887 (51%), Gaps = 73/887 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++ + D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQTLPLEDIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ RM+QDW +   LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEAMIRMSQDWKMGEPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ KDTV    N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLSDIEKDTVSQAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +ID+P +D+D +ME + GPDFPTG +I G+  I+ AY  G+G IV+R  
Sbjct: 182 NLGEVIDATIHMIDHPKVDVDKIMEFLPGPDFPTGGIIQGKGEIRKAYEKGKGRIVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE   G REQ++VTEIP+++NKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 VDIEPMKGGREQLIVTEIPFELNKANLVKKIDDVRVNAKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A + ++LN L++ T LQ  ++ NMVA++   P +  ++ +L+++V  RE+V+++R+
Sbjct: 302 LKKEADSQLVLNYLFKNTDLQVNYNFNMVAIDNMTPVQTGVLQMLRSYVKHREDVIIKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ LNKA  R H++ GL   V+ LDEVV  IR S N   A+  +                
Sbjct: 362 QFDLNKAEKRLHLVEGLIRMVSILDEVVATIRASENKADAKENI---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   L  +I E   I++ 
Sbjct: 406 ----------KVSFGFTEEQAEAIVTLQLYRLTNTDIVTLQNEQAELEQKILELKAIIND 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  VK +   PRR+ + + +  +E E  + IV ED VV+V+  GY+KR 
Sbjct: 456 ERTLFNLMKRELREVKKKFARPRRSELQDEVQTIEIEASELIVAEDTVVSVTRSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + +          +  RD+D +       T   +L F++LG V    +  L     
Sbjct: 516 SPRSFASS-----ALEEIGKRDDDELLYYANAKTTQHLLIFTNLGNVIYRPIHELSDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR---RNKLSDFIQI 668
           +  G+ L   LS    +     +   +  +  N   +V  T++G ++   R   S +   
Sbjct: 571 KDIGEHLSQSLSNFSSDEKVIYVQIVDAFAGEN---LVVVTRNGQIKQIERESFSPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   D+ + + +  Q  D++L ++ G  +RF +  + V   R + GV+ ++
Sbjct: 628 RSKSTPYAKLKGNDDEVVLISPVQFTDLMLISENGYALRFNLDDVPVLGARAA-GVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D++ +   V         +  ++K +  +    +        +        +    
Sbjct: 687 LKNDDKIKAAFFVNSNSWYLLTQRAFIKRVKTEDIPATSRANRGLQVLRTLKTNNHKVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                   +   L  +E+          F  +       +A    +              
Sbjct: 747 AGLINSTADLSAL--TEE-------LDLFSQA-------KAPATKET------------- 777

Query: 849 DNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++Q++ ++S+ G    + + ++ ++ R + G  I      E++ SV
Sbjct: 778 -DEQVLEVISETGKKYDINLCDLSLSDRTSNGHPIA--DDLEKIASV 821


>gi|104773994|ref|YP_618974.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116514010|ref|YP_812916.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423075|emb|CAI97796.1| DNA topoisomerase IV, subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116093325|gb|ABJ58478.1| DNA topoisomerase IV subunit A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 827

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 271/891 (30%), Positives = 434/891 (48%), Gaps = 96/891 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +      ++++  I  E + V +S  GY
Sbjct: 456 ILADSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G         +             +  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNGLPETDRVVYEGSLSTLTN-----LYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    +L  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALD--DPDLAFLLATNDGFIKQVALADLQP 628

Query: 668 INR---SGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +        +++ +I L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLAKTSEKREITLFTNQAFALKYDIDEVPQVGARAA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 689 -GVKSINLKEDDYVVACLVTDPQYEDLLKVGL---------------------------- 719

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                V+++G  K+        ++R+ +G+      K      +
Sbjct: 720 ---------------------VTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPH-RI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           VA+     N ++IL++      +IR   ++  +  R + G  +     D  
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTDGE 806



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 18/215 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY 754
           L ++ G   R   S++R F      G  G  L + D+V+   S++ + +     +     
Sbjct: 509 LISRDGYIKR---SSMRSFQS-TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLI 562

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGKRTS 813
            + +         D  +  S +   + + +I      E L   +   L  +  GF K+ +
Sbjct: 563 YRPVHELVESKWKDVGQHLSQELGLAADESIIRVFALEALDDPDLAFLLATNDGFIKQVA 622

Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
             D + +    +R+   I A  +   +     V +   ++  +I L +++   ++  ++E
Sbjct: 623 LADLQPTRTYKSRA---IMAMKMKGEDSRVITVDLAKTSEKREITLFTNQAFALKYDIDE 679

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +        GV   +  +D+ VV+   + + +  D
Sbjct: 680 VPQVGARAAGVKSINLKEDDYVVA-CLVTDPQYED 713


>gi|73921620|sp|Q5XCJ9|PARC_STRP6 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 819

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/892 (31%), Positives = 441/892 (49%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG--NIS 786
           L   D + S   V         +   +K M+      +        +  +   +      
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 746

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q     EQF L          T   +                              
Sbjct: 747 AGGVQSDASAEQFDLF---------TDIPE------------------------------ 767

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 768 -EETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|306827497|ref|ZP_07460780.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
 gi|304430295|gb|EFM33321.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus pyogenes
           ATCC 10782]
          Length = 819

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/892 (31%), Positives = 441/892 (49%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG--NIS 786
           L   D + S   V         +   +K M+      +        +  +   +      
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 746

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q     EQF L          T   +                              
Sbjct: 747 AGGVQSDNSAEQFDLF---------TDIPE------------------------------ 767

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 768 -EETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|312277995|gb|ADQ62652.1| DNA topoisomerase IV (Subunit C) [Streptococcus thermophilus ND03]
          Length = 818

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 266/796 (33%), Positives = 421/796 (52%), Gaps = 43/796 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVISLIRASENKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE  +L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTLFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A +        V  RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNASK-----IEEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   +     +  TK G ++R +  +F      
Sbjct: 571 KDLGEHLSQTITNFSKDEEVLYAEILDD---FETGTYLATTKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    +++   T  Q +DI++ T+ G  +RF    +    G  +VGV+ I+
Sbjct: 628 KSKSVKYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEV-PVVGAKAVGVKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSA---QRRLISGDTEEITSLKNDSSVEGNI 785
           L   D+V ++ +          +   +K ++     R   +G   ++             
Sbjct: 687 LKDDDKVQAVFVANTQSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLRELKTKPHRVFT 746

Query: 786 SEERCQELKLKEQFIL 801
           +     E    E  +L
Sbjct: 747 AGPVFTENAGAEIDLL 762



 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 67/527 (12%), Positives = 155/527 (29%), Gaps = 34/527 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + S
Sbjct: 235 RVVVRSRTEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRS 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D+      +  +  +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I               +   E L     +       I          D      +    
Sbjct: 355 DIIVARSKFDKEKAEKRLHIVEGLIRVISILDE---VISLIRASENKSDAKENLKVSYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 + +  L  +      LF           
Sbjct: 412 SEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLF----------- 460

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +     +   K   N             +              V  T+ G V+R   
Sbjct: 461 --NVMKRELRDIKKKFGNDRRSELQAETK-TIEIDTASLIVEEETYVSITRGGYVKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-- 720
             F          +     D+++ V+       +L+ T     +  PI  +     ++  
Sbjct: 518 RSFNASKIEE---VGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLG 574

Query: 721 ---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S  +   + +K ++V+   I+   +         +  +    R          S   
Sbjct: 575 EHLSQTIT--NFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSV 632

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                 + S+       ++   I+ +++KG+  R ++ +  +      G++A ++   ++
Sbjct: 633 KYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDK 692

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
               V    V +     L++ + +L RV  ++I  A RA +G+ +  
Sbjct: 693 ----VQAVFVANTQSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLR 735


>gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
 gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3]
          Length = 825

 Score =  626 bits (1614), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/741 (37%), Positives = 427/741 (57%), Gaps = 44/741 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I ++S+   M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + 
Sbjct: 3   DAKIETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  L+E  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + +I +PD  L+ LME I GPDFPTG ++ G  GIK AY TGRG IV+R 
Sbjct: 183 HNLGEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGGIVQGADGIKKAYQTGRGRIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI VTEIPY+VNKA ++++I +L   K++  I + RDE+DR G R+ I
Sbjct: 243 KTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKR A+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++AF++EVV RR
Sbjct: 303 ELKRNANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKHILTSYLAFQKEVVRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T Y L+KA+ R H++ GL  A++ LD+V++ IR S N + A++ L+ +            
Sbjct: 363 TSYNLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQ------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            ++VQ  AI+ L+L RLT     ++ +E   L   I E   ILS
Sbjct: 411 --------------YAFTDVQAEAIVTLQLYRLTNTDVTELEDEQQHLTDLIDEYQLILS 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++++E+ +VK E   PRRT+I   +   +++ +  +  ED+VV VSH GY+KR
Sbjct: 457 DDEELSKVVRREMQAVKKEFGNPRRTQIENQVEKLEIDTKVTVANEDVVVLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A            +R++D+   +   +T   +  F++ G V    V  L    
Sbjct: 517 SSIRSFKASSLDED-----GLREDDYPLLITQTNTLAHLFMFTNRGHVIYRPVHELADVR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ +   + L + E I   M F + +        +F T  G V+++   D+    +
Sbjct: 572 WKDTGEHISQTIGLAEDEEIIKAMVFDKLDL---PGSFIFGTSDGQVKQSAYKDYQPGSR 628

Query: 668 INRSGKIAMKLDSRD-EILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 +A+KL S+D  ++SV+     ++   +L  ++ G  VRF ++ +    G  + G
Sbjct: 629 YKSHASMAVKLKSKDATVVSVDYYEPTDENRSLLAISREGYAVRFDVADV-PVTGLRTAG 687

Query: 724 VRGISLAKGDQVISMAIVLHA 744
           VR I+L   D ++ + +V   
Sbjct: 688 VRAINLKDDDALVDLVLVKDG 708



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 59/257 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  +  G ++R+ +  F   +        L   D  L +        + + T  G  + 
Sbjct: 505 VVLVSHAGYIKRSSIRSFKASSLDE---DGLREDDYPLLITQTNTLAHLFMFTNRGHVIY 561

Query: 708 FPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +     +++     + I LA+ +++I   +                         
Sbjct: 562 RPVHELADVRWKDTGEHISQTIGLAEDEEIIKAMV------------------------- 596

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                     +L L   FI   +  G  K+++  D++  +R  K
Sbjct: 597 ------------------------FDKLDLPGSFI-FGTSDGQVKQSAYKDYQPGSRY-K 630

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              +  V   ++   +V+V      D+   ++ +S +G  +R  V ++ +    T GV  
Sbjct: 631 SHASMAVKLKSKDATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRA 690

Query: 883 FSTAKDERVVSVERIRE 899
            +   D+ +V +  +++
Sbjct: 691 INLKDDDALVDLVLVKD 707



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 91/277 (32%), Gaps = 19/277 (6%)

Query: 647 YVVFATKHGNVRRNKLSDFIQIN-----RSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G+V    + +   +            + L   +EI+      + +     + 
Sbjct: 549 HLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLAEDEEIIKAMVFDKLDLPGSFIF 608

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHADADYDERICYMKH 757
            T  GQ  +      +  +   S     + L   D  V+S+      D +        + 
Sbjct: 609 GTSDGQVKQSAYKDYQPGSRYKSHASMAVKLKSKDATVVSVDYYEPTDENRSLLAISREG 668

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            + +  +       + +    +    +        L    Q + +++++G  K     + 
Sbjct: 669 YAVRFDVADVPVTGLRTAGVRAINLKDDDALVDLVLVKDGQRVASITQRGAFKEMPIDEI 728

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND-----QIILVSDKGTLIRVPVNEIRI 872
            +  R+ +G       K +     +A F   D D     ++  ++D+     V V +  +
Sbjct: 729 AVGARARRGELVLHRLKSHPHK--IADFLAYDADFAGTFEV--ITDRPQFQDVAVADHHL 784

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            S  + G  +  T      V + R++E+ I+ E E  
Sbjct: 785 GSIKSNGTFVIDTETQGTPVKI-RVKETNILHEGEQE 820


>gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
 gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1]
          Length = 819

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 282/905 (31%), Positives = 442/905 (48%), Gaps = 114/905 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTSLGQIKRFERQEISPWRT 626

Query: 671 SGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL + D+ +      Q  D++L T  G  +RF I+ +    G  + GV+ +
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYVLRFSINDV-PVVGSKAAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++S  I                                               
Sbjct: 686 NLKDSDHIVSAFIANTTSL----------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG--- 839
                      ++LT   +G  KR +      ++R+ +G++     K       + G   
Sbjct: 705 -----------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPVY 751

Query: 840 --------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                    L +    ++ D  +L  +S  G +  V +++   + R + G  +     DE
Sbjct: 752 LEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDE 811

Query: 890 RVVSV 894
            V SV
Sbjct: 812 EVFSV 816


>gi|325125699|gb|ADY85029.1| DNA topoisomerase IV subunit C [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 827

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 271/891 (30%), Positives = 435/891 (48%), Gaps = 96/891 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E  + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K
Sbjct: 2   PETHERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYRDGNTADK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K A+  G +MG YHPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PFKKAAKAVGNIMGNYHPHGDSSIYGALVFLSQDWKMREPLIEMHGNNGSMDGDSPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL+D+ K+TV    N+D +  EP VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLAKISNVLLEDIDKETVPMVLNFDDTAYEPTVLPARFPNLLVNGSTGISSGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + ++ +PD  L+ LM  ++GPDFPTG +++G+ G+++AY TG+G I 
Sbjct: 182 IPPHNLGEVLDATIHLLKHPDASLEDLMTFVKGPDFPTGGIVMGKKGLRDAYKTGKGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  +HIE+  G R+QIVVTEIPY VNKA +++KI E+   + +  I+++RDE+DR G  
Sbjct: 242 VRAKTHIEEIRGHRQQIVVTEIPYLVNKAQLVKKIDEIRVSRELDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+ A A  ILN L + T LQ  ++ NMVA+    P +  L  IL A++   EEVV
Sbjct: 302 IVIELKKDADAQNILNYLLKNTDLQVSYNFNMVAIAHMTPVQVGLKRILAAYLEHEEEVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA DR  ++ GL  A++ LD+V+++IR S N   A++ L+           
Sbjct: 362 TKRTQFDLKKASDRLEIIQGLIKAMSILDQVIKVIRASKNKADAKKNLVAE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               ++ Q  AI+ L+L RLT      ++ E   L  +I     
Sbjct: 413 -----------------FAFTDRQAEAIVSLQLYRLTNTDVLALQAEEEELTGKIAAYEK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           IL+    L   I +EL +VK E  + RR+ I +      ++++  I  E + V +S  GY
Sbjct: 456 ILADSKVLQKEIIKELRAVKKEFGSDRRSEISDETARVEVDEKALITEESVRVLISRDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  +  +++   G  G         +             +  F++ G +    V  L 
Sbjct: 516 IKRSSMRSFQSTEAGDNGLPETDRVVYEGSLSTLTN-----LYLFTNHGNLIYRPVHELV 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   L L   E I  +      +    +L  + AT  G +++  L+D   
Sbjct: 571 ESKWKDVGQHLSQELGLAADESIIRVFALEALD--DPDLAFLLATNDGFIKQVALADLQP 628

Query: 668 INR---SGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                    +AMK+   D  +        +++ +I+L T     +++ I  +     R +
Sbjct: 629 TRTYKSRAIMAMKMKGEDSRVITVDLAKTSEKREIILFTNQAFALKYDIDEVPQVGARAA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+ I+L + D V++  +      D  +                               
Sbjct: 689 -GVKSINLKEDDYVVACLVTDPQYEDLLKVGL---------------------------- 719

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                V+++G  K+        ++R+ +G+      K      +
Sbjct: 720 ---------------------VTQRGAFKQMPLKLIGKTSRAKRGVLVLRNLKTKPH-RI 757

Query: 842 VAVFPVNDNDQIILVSDK--GTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           VA+     N ++IL++      +IR   ++  +  R + G  +     D  
Sbjct: 758 VALKAYGQNHELILITSSLRKQVIRT--SDHPVGDRQSNGSFVIDVKTDGE 806



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 84/215 (39%), Gaps = 18/215 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY 754
           L ++ G   R   S++R F      G  G  L + D+V+   S++ + +     +     
Sbjct: 509 LISRDGYIKR---SSMRSFQS-TEAGDNG--LPETDRVVYEGSLSTLTNLYLFTNHGNLI 562

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE-LKLKEQFILTVSEKGFGKRTS 813
            + +         D  +  S +   + + +I      E L   +   L  +  GF K+ +
Sbjct: 563 YRPVHELVESKWKDVGQHLSQELGLAADESIIRVFALEALDDPDLAFLLATNDGFIKQVA 622

Query: 814 SYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
             D + +    +R+   I A  +   +     V +   ++  +IIL +++   ++  ++E
Sbjct: 623 LADLQPTRTYKSRA---IMAMKMKGEDSRVITVDLAKTSEKREIILFTNQAFALKYDIDE 679

Query: 870 IRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +        GV   +  +D+ VV+   + + +  D
Sbjct: 680 VPQVGARAAGVKSINLKEDDYVVA-CLVTDPQYED 713


>gi|73916908|gb|AAZ93322.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/883 (31%), Positives = 450/883 (50%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYYAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +      AT+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+E+GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054]
          Length = 816

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 284/846 (33%), Positives = 414/846 (48%), Gaps = 94/846 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                  + E+ I  V + DEMQ S+L YA +VI  RA+PD RDGLKPVHRRIL+   +M
Sbjct: 6   SPTPPPGDFEERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+   + +VKCAR+ GEVMG+ HPHG+A+IYDA+ R+AQ +S+RL LI+G GNFGS+   
Sbjct: 66  GLRPERGHVKCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGND 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTE RL  A+  +++ + +DTVDF PNYDGS QEP VL + +PN+LVNG  GI
Sbjct: 126 DPPAAMRYTESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGI 185

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNL EVV     +I +P  DL+ LM  + GPD PTG  I+G +GI++AY 
Sbjct: 186 AVGMATNMPPHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGGRIVGLSGIRDAYE 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRG+  IR  + IE  +  R+ IVVTE+PY V    ++ KI +LV  K++  IAD++D 
Sbjct: 246 SGRGTFKIRATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKDL 305

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 306 TDREHGLRLVIEVKNGFVPEALLEQLYKLTPMEETFGINNVALVDGQPLTLGLKELLEVY 365

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  R  VV RR+ +   K +DR H++ GL +A+ ++DEV+ +IR S +   A+  LM+R 
Sbjct: 366 VDHRFTVVKRRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLMER- 424

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE QT  IL+  L RLT   R ++  E + L 
Sbjct: 425 -------------------------FGLSETQTAYILDTPLRRLTRFDRVELEAEQSKLL 459

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV----RED 537
            EI E  +IL S  +L  ++  EL SV  +  T RRT ++E          +      + 
Sbjct: 460 KEIAELTEILESDHKLRSVVSSELGSVAKQFGTERRTVLLEAGSVPSAALAVPLEVADDP 519

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G + R        +    + +  V       +      +    V   ++ G 
Sbjct: 520 CRVLLSSTGLLARTFDLKPVTEESAARAKHDV-------LASAVPATARGDVGLVTTAGR 572

Query: 598 VYKEKVWRLPIGSPQARGKA----LINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           V +  V  LP   P     +    +   L L  GER   +    E     ++  +   T 
Sbjct: 573 VLRLPVIDLPALPPGTAALSGGAAVSEFLRLEDGERPIALTTLDE-----SSPGLALGTV 627

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +     + L   D ++ +VE  T E D++  T   Q +R+  + 
Sbjct: 628 QGVVKRVVPEWPAN--KDEFEVIALKDGDAVVGAVELRTGEEDLVFITSDAQLLRYQANQ 685

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + G+ GI LA G +V+S   V  A       +       A     S      
Sbjct: 686 VRP-QGRPAGGMAGIKLADGARVLSFGAVDPAQDAVVLSVAAATGTLAGEEQSSW----- 739

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                                K T    +    R+  G+R    
Sbjct: 740 -------------------------------------KLTPFDQYPRKGRATGGVRCQRF 762

Query: 833 SKINEI 838
            +  + 
Sbjct: 763 LRGEDG 768



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 70/260 (26%), Gaps = 59/260 (22%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R     F     + + A +    D + S    T   D+ L T  G
Sbjct: 517 DDPCRVLLSSTGLLART----FDLKPVTEESAARAKH-DVLASAVPATARGDVGLVTTAG 571

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + +R P+  +       +       L+ G  V     +   +                  
Sbjct: 572 RVLRLPVIDLPALPPGTAA------LSGGAAVSEFLRLEDGERPIALTTLDESSPGLALG 625

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
            + G  + +      +  E                                         
Sbjct: 626 TVQGVVKRVVPEWPANKDEFE--------------------------------------- 646

Query: 824 GKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              + A       +  A+V    +    + ++ ++    L+R   N++R   R   G+  
Sbjct: 647 ---VIALK-----DGDAVVGAVELRTGEEDLVFITSDAQLLRYQANQVRPQGRPAGGMAG 698

Query: 883 FSTAKDERVVSVERIRESEI 902
              A   RV+S   +  ++ 
Sbjct: 699 IKLADGARVLSFGAVDPAQD 718


>gi|227524587|ref|ZP_03954636.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
 gi|227088262|gb|EEI23574.1| DNA topoisomerase, ATP-hydrolyzing [Lactobacillus hilgardii ATCC
           8290]
          Length = 812

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 279/828 (33%), Positives = 440/828 (53%), Gaps = 45/828 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIENLSLEDVMGERFSRYSRSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKAFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+Q+W +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALVRMSQNWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKISTEMLRDIDKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +P   LD LM+ ++GPDFPTGA++ G  GIK AY TGRG +++R  
Sbjct: 182 NLGEVIDAVLYLQKHPKATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGRGKVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIVV+EIPY+VNKA ++++I EL   KR+  I+++RD+SDR+G  +VIE
Sbjct: 242 TKIESLKGNKAQIVVSEIPYEVNKAQLVKRIDELRLNKRVDGISEVRDQSDREGMSIVIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL +++ F+ EV+ +RT
Sbjct: 302 LKRDVDSTGILNFLFKNTDLQISYNFNMVAIDHMRPERLSLKQILVSYLEFQREVIKKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L KA DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 QFDLQKALDRQHIVEGLIKALSILDQVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q+ AI+ L+L RLT      +  E   L  +I     IL+ 
Sbjct: 408 ------------TYQFSEKQSDAIVALQLYRLTNTDVTQLEKESQELSDKITGFKKILAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++ +EL ++      PRRT I +    + +  +  I  ED+VV VSH GY+KR 
Sbjct: 456 PKELNKVLARELRAIAKNYRNPRRTEIQDKVATIKISTDVIIPDEDVVVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A            ++DED+   +  ++    +  F+S G +    ++ +     
Sbjct: 516 SIRSYKASGNEN------GLKDEDYPIFMKQMNARDHLFMFTSKGNLIYRPIFEIADVRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I     F   +        + AT  G+++R KL+D       
Sbjct: 570 KDTGEHISQTIGLDNDEEIIGTFAFSSLK---EKGLFLIATDDGHIKRTKLTDLAPGRTY 626

Query: 672 GKIAM---KLDSRDEILSVETCTQEND----ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
            K A    KL      +       + D    +LL +KLG  +R+ I  +    G  + GV
Sbjct: 627 KKHAYMYEKLKDPKSRIVAIDYLADLDASGKLLLISKLGLALRYGIDEV-PINGARTTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +LA GD + ++ +V   D              A + + +        +      + +
Sbjct: 686 KSQNLADGDVITNLQLVNDDDVIAIVTQRGAFKKLAVKEIPATSRARKGVMILRELKQNS 745

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                   +  ++  +  +++          +F +  R   G    DV
Sbjct: 746 HRVVDFTVINNEDTPLEVLTDHQRVHDILPNEFSLGGRYSNGSFVIDV 793



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 14/221 (6%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
               E+ +++ +  G   R   S+IR +    + G     L   D  I M  +   D   
Sbjct: 496 IIPDEDVVVMVSHDGYIKR---SSIRSY---KASGNEN-GLKDEDYPIFMKQMNARDHLF 548

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
               +     + +     +   DT E  S       +  I          ++   L  ++
Sbjct: 549 MFTSKGNLIYRPIFEIADVRWKDTGEHISQTIGLDNDEEIIGTFAFSSLKEKGLFLIATD 608

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTL 862
            G  KRT   D     R+ K          +    +VA+  + D D   +++L+S  G  
Sbjct: 609 DGHIKRTKLTDLAP-GRTYKKHAYMYEKLKDPKSRIVAIDYLADLDASGKLLLISKLGLA 667

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R  ++E+ I    T GV   + A  + + +++ + + +++
Sbjct: 668 LRYGIDEVPINGARTTGVKSQNLADGDVITNLQLVNDDDVI 708


>gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713]
          Length = 808

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 289/898 (32%), Positives = 465/898 (51%), Gaps = 99/898 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RV
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  
Sbjct: 302 VVELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+            
Sbjct: 362 RRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I    +I
Sbjct: 412 ----------------FSFTEAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I++EL ++  +  + R T I + +    +E E  + +ED+++ VSH GYV
Sbjct: 456 LANPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  + A            ++DED+     +V+T + +  F++ G +    +  +  
Sbjct: 516 KRSSLRSFNASDNDEN-----GLKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   + L   E    ++     ES   +   + ATK G +++ KL+D    
Sbjct: 571 SRWKDTGEHLSQTVGLGNDE---YVLNAFVFESIDQDAKFLIATKEGYIKQVKLADLKPG 627

Query: 669 NRSGKIA---MKLDSR-DEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 A   +KL +  DE++SV +  + ++ +   +  G  +R+ +  +    G  + G
Sbjct: 628 RTYKTRASRYVKLKTDADEVISVSQVESDKSQVFCASYTGYGLRYSLDEV-PTNGALAAG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L   D + ++ +V  +D                                      
Sbjct: 687 VKCMDLR-DDTLANVILVSESD-------------------------------------- 707

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                        E  ILT  ++G  K+    D  ++ R+ +G++     K      +V 
Sbjct: 708 -------------EVSILT--QRGSYKKMKVADVPLTTRARRGVQILRELKTKPH-RIVF 751

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRES 900
              V  N +++L+   G    V   + ++  R + G  I   A+ + + ++  +I E 
Sbjct: 752 AELVQINQELVLLLSDGKQEIVKPEDHQLNDRYSNGSFIVD-AETDTIENIYTKIIED 808


>gi|313885206|ref|ZP_07818958.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619897|gb|EFR31334.1| DNA topoisomerase IV, A subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 829

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 286/896 (31%), Positives = 460/896 (51%), Gaps = 96/896 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +   + I  ++ +D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +     + 
Sbjct: 2   QANNQNIEELTFSDILGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYEDRNTADN 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G V+G +HPHG++++Y+A+ RM+QDW  R  LI+  GN GS+DGDP AA R
Sbjct: 62  PYRKSAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKNRQPLIDMHGNNGSMDGDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL D+  DTVD+  N+D S +EP+VL AR+PN+LVNG  GI+ G AT 
Sbjct: 122 YTEARLSKIAMELLRDIHMDTVDYALNFDDSLEEPMVLPARFPNLLVNGATGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  V ++ +    L  +M+ I+GPDFPTG ++ G  G+K  Y +G G IV
Sbjct: 182 IPPHNLGEVIDAAVYMLSHDTYTLADIMKFIKGPDFPTGTILQGAKGLKAIYKSGHGKIV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  S IE   G + QIV+TE+PY+VNK+ ++++I ++  ++++  +AD+RDESDR G R
Sbjct: 242 LRSTSTIESLKGGKSQIVITELPYEVNKSKLIQRIDDIRIQRKVEGMADVRDESDRNGTR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+KR A A+ ILN L++ T LQ  +  NM+A+N  +P    LI +L+A++A ++EV+
Sbjct: 302 LVIEIKREADAEQILNYLFKNTDLQINYHFNMIAINQRRPHEVGLIDMLEAYIAHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RRT+Y LNK + R H++ GL   V+ LD+V+  IR S +   A+  L +          
Sbjct: 362 LRRTQYSLNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKE--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S  Q  AI+ L+L RLT      ++NE   L   I    +
Sbjct: 413 -----------------FDFSLDQAEAIVSLQLYRLTNTDIVALQNERLELNERIGMYHN 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGY 547
           ILS    L   +  EL +VK    +PRRT+I   + ++  E    +  E ++VTV+  GY
Sbjct: 456 ILSKDKSLKATLINELKAVKKAFPSPRRTQIEVEIEEINIEQSLLVNEEQVMVTVTKEGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +            + +R+ D+V     +ST+ +++  ++ G      V  LP
Sbjct: 516 IKRTSLRSFATSDT-----MDLGVRELDYVIFAQELSTYQALVLITNKGQYIHLPVHELP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESS-----WNNLYVVFATKHGNVRRNKL 662
               +  G  L    +L  GE++  + P   D +      + + Y+V ATK G +++  L
Sbjct: 571 DIRWKDLGMHLSQQYNLTDGEQVVFVSPASRDINDQELAEYKDQYLVMATKEGMIKKTPL 630

Query: 663 SDFIQINR---SGKIAMKLD-SRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVF 716
           +DF+           AMK+    DEI+ V    Q+    ++L T+    +R+P++ +   
Sbjct: 631 TDFVSYRTYKSRPSQAMKMKTETDEIIGVAAVKQDTVAQVILLTEKSYSLRYPLTEVSE- 689

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV  I+L K D + +  +                                    
Sbjct: 690 YGLKAQGVTAINLKKDDYLAAFLLDNQG-------------------------------- 717

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                           ++ + Q IL  +++G  KR  +     + R  +GI      K N
Sbjct: 718 ----------------MESQAQIILM-TQRGNIKRFDNQIIADARRGSRGILMLKELKNN 760

Query: 837 EIGALVAVFPVNDNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +++   + D DQ++ V+ D G ++ +   ++  + R   G  +    K  +V
Sbjct: 761 PH-RVLSAALIQDLDQMLEVTGDTGFVVTIQARQVPKSDRLANGSSLDQLDKLGQV 815



 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 80/516 (15%), Positives = 167/516 (32%), Gaps = 86/516 (16%)

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           +I+      E  + +L+QR  +   I+  ++ + D       +GT  + E++  A  E  
Sbjct: 257 QIVITELPYEVNKSKLIQRIDDIR-IQRKVEGMADVRDESDRNGTRLVIEIKREADAEQI 315

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L  L      D++   +   I I +          +L         V       RRT+  
Sbjct: 316 LNYLFKN--TDLQINYHFNMIAINQRRPHEVGLIDMLEAYIAHQKEVIL-----RRTQYS 368

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                           MV  +  +    R   S   A+    K     + + E  V+   
Sbjct: 369 LNKDQARLHIVDGLIYMVSILDQVIATIRQSESKSHAKENLAKEFDFSLDQAEAIVSLQL 428

Query: 582 IVSTHTSVLFFSSL--------GFVYKEKVWR-LPIGSPQARGKALINILSLNQGERITT 632
              T+T ++   +         G  +           +     KA+       +  +I  
Sbjct: 429 YRLTNTDIVALQNERLELNERIGMYHNILSKDKSLKATLINELKAVKKAFPSPRRTQIEV 488

Query: 633 IMPFPEDES---SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
            +     E          +V  TK G ++R  L  F     S  + + +   D ++  + 
Sbjct: 489 EIEEINIEQSLLVNEEQVMVTVTKEGYIKRTSLRSFAT---SDTMDLGVRELDYVIFAQE 545

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI------SLAKGDQVISMAIVLH 743
            +    ++L T  GQ +  P+  +     ++     G+      +L  G+QV+ ++    
Sbjct: 546 LSTYQALVLITNKGQYIHLPVHELPDIRWKD----LGMHLSQQYNLTDGEQVVFVSPASR 601

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              D +                                              K+Q+++  
Sbjct: 602 DINDQELAEY------------------------------------------KDQYLVMA 619

Query: 804 SEKGFGKRTSSYD---FRI-SNRSGKGIRATDVSKINEIGALVAVFPVNDND--QIILVS 857
           +++G  K+T   D   +R   +R  +   A  +    E   ++ V  V  +   Q+IL++
Sbjct: 620 TKEGMIKKTPLTDFVSYRTYKSRPSQ---AMKMKT--ETDEIIGVAAVKQDTVAQVILLT 674

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +K   +R P+ E+       +GV   +  KD+ + +
Sbjct: 675 EKSYSLRYPLTEVSEYGLKAQGVTAINLKKDDYLAA 710



 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L  +EQ ++TV+++G+ KRTS   F  S+         D+    E+  ++    ++    
Sbjct: 500 LVNEEQVMVTVTKEGYIKRTSLRSFATSD-------TMDLGVR-ELDYVIFAQELSTYQA 551

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVDEAEST 909
           ++L+++KG  I +PV+E+        G+ +   ++    E+VV V     S  +++ E  
Sbjct: 552 LVLITNKGQYIHLPVHELPDIRWKDLGMHLSQQYNLTDGEQVVFVS--PASRDINDQELA 609

Query: 910 E 910
           E
Sbjct: 610 E 610


>gi|258424794|ref|ZP_05687668.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
 gi|257844958|gb|EEV68998.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus A9635]
          Length = 800

 Score =  626 bits (1613), Expect = e-177,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 453/887 (51%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RR+L+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRMLYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKGSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE---------------- 408

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   IK+   IL +  
Sbjct: 409 ----------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E  +  E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVYNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKVE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVYNEKDFNTDA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 604 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITN 659

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 660 KGMSLTYNTSELSDTGLRAAGVKSINLKVEDFVVMTEGVSENDTI 704


>gi|50914075|ref|YP_060047.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
 gi|50903149|gb|AAT86864.1| Topoisomerase IV subunit A [Streptococcus pyogenes MGAS10394]
          Length = 821

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 281/892 (31%), Positives = 441/892 (49%), Gaps = 85/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 573 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 629

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 630 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG--NIS 786
           L   D + S   V         +   +K M+      +        +  +   +      
Sbjct: 689 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 748

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               Q     EQF L          T   +                              
Sbjct: 749 AGGVQSDASAEQFDLF---------TDIPE------------------------------ 769

Query: 847 VNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 770 -EETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|307706407|ref|ZP_07643217.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
 gi|307618194|gb|EFN97351.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK321]
          Length = 811

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/874 (32%), Positives = 451/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDASVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +   +++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---- 678
           +  +       +   +     +      AT+ G ++R +  +F         ++K     
Sbjct: 570 TNFETNEEILYVEVVD--QFDDATTYFAATRFGQIKRVERKEFSPWRTYKSKSVKYAKLK 627

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ ++L   D + S 
Sbjct: 628 DETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKAAGVKAMNLKADDVLQSA 685

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I   +      +   +K +S      +   +  + +  +   + +              
Sbjct: 686 FICNTSSFYLLTQRGSLKRVSIDEIPATSRAKRGSQVLRELKNKPHRVFLAGA------- 738

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-S 857
               V+E+GF                              G L +   V+ NDQ ++V S
Sbjct: 739 ----VAEQGFV-----------------------------GDLFS-TEVDGNDQTLIVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 141/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E    ++              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSTLEDTAKVIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V+       +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 576 EEILYVEVVDQFDDATTYFAATRFGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 631

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + S 
Sbjct: 632 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDVLQSA 685


>gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
 gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037]
          Length = 814

 Score =  625 bits (1612), Expect = e-177,   Method: Composition-based stats.
 Identities = 280/874 (32%), Positives = 449/874 (51%), Gaps = 83/874 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTG +I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKVDKLMEFLPGPDFPTGGIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYEFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL---- 678
           +  +           +     +      AT+ G ++R +  +F         ++K     
Sbjct: 570 TNFETNEEILYAEVVD--QFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLK 627

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           D  D+I++V      +D+LL ++ G  +RF I  +    G  + GV+ ++L   D + + 
Sbjct: 628 DETDQIVAVAPIK-LDDVLLISQNGYALRFNIEEV-PVVGAKATGVKAMNLKADDALQAA 685

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            I   +      +   +K +S +    +   +    +  +   + +              
Sbjct: 686 FICNTSSFYLLTQRGSLKRVSIEEIPATSRAKRGLQVLRELKNKPHRVFLAGA------- 738

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-S 857
               V+E+GF                              G L +   V +NDQ +LV S
Sbjct: 739 ----VAEQGF-----------------------------FGDLFS-TEVEENDQTLLVQS 764

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 765 NKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 66/535 (12%), Positives = 141/535 (26%), Gaps = 78/535 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYEF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSTLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIG 839
             I      +           +  G  KR    +F   R      K ++   +   +E  
Sbjct: 576 EEILYAEVVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYK--SKSVKYAKL--KDETD 631

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +VAV P+  +D ++L+S  G  +R  + E+ +      GV   +   D+ + + 
Sbjct: 632 QIVAVAPIKLDD-VLLISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQAA 685


>gi|73916874|gb|AAZ93305.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916924|gb|AAZ93330.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 453/884 (51%), Gaps = 82/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIE 313
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  I A++RDESDR G R+ IE
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAAEVRDESDRDGLRIAIE 300

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 301 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 360

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 361 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 404

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 405 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 455 ERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 515 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   +     E    I+     +   +       T+ G ++R +  +F      
Sbjct: 570 KDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 628 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 687 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 747 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 765

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 809



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 84/305 (27%), Gaps = 62/305 (20%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                  +Y      L     +           L+  E     +              V 
Sbjct: 451 IIGDERTMYNLMKKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVS 504

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            TK G ++R     F          +     D ++ V++      +L+ T LG  +  PI
Sbjct: 505 VTKAGYIKRTSPRSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPI 561

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +               +   D                                    E
Sbjct: 562 HELA-------------DIRWKD----------------------------------IGE 574

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIR 828
            ++    +      I      +          V+  G  KR    +F    + R  K ++
Sbjct: 575 HLSQTITNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVK 633

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              +   ++   +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D
Sbjct: 634 YAKL--KDDTDQIVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKED 690

Query: 889 ERVVS 893
           + + S
Sbjct: 691 DVLQS 695


>gi|228478260|ref|ZP_04062868.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
 gi|228249939|gb|EEK09209.1| DNA topoisomerase IV, A subunit [Streptococcus salivarius SK126]
          Length = 818

 Score =  625 bits (1612), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/892 (31%), Positives = 440/892 (49%), Gaps = 82/892 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+  +TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDNNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G +EQI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEQLKGGKEQIIVTEIPYDVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDNFTPRQVGLQKILSSYIAHRRDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L  +I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEADLREQIATLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  +K +    RR+ +      ++++    IV E+  V+++  GYVKR 
Sbjct: 456 ERTMFNVMKRELRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++   V    +  LP    
Sbjct: 516 SPRSFNAS-----TIDEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   +     + ATK G ++R +  +F      
Sbjct: 571 KDLGEHLSQTITNLSKDEEVLYAEILDD---FETGTYLAATKLGQIKRFERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +   T  Q +DI++ T+ G  +RF    +    G  + GV+ I+
Sbjct: 628 KSKSVKYAKLKDDSDFIVTVTPIQLDDIMIITQKGYALRFNADEV-PVVGAKAAGVKTIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V ++ +          +   +K ++      +        +  +   + +    
Sbjct: 687 LKDDDTVQAVFVANTQSFYLLTQRASLKRVATADIPQAKRAGRGLQVLRELKTKPHRVFT 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                          +E                               EI  L    PV 
Sbjct: 747 AGP----------VFTEN---------------------------AGGEIDLL--ATPVE 767

Query: 849 DNDQIILVS-DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +  Q +LV+   G    V ++ + ++ R + G  I   A  E  V   +I E
Sbjct: 768 ETPQTLLVTATTGETAEVDLSLLNLSDRTSNGSFIEGLADKE--VFSAKIIE 817


>gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae
           ATCC 13813]
          Length = 819

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/906 (31%), Positives = 442/906 (48%), Gaps = 116/906 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTSLGQIKRFERQEISPWRT 626

Query: 671 SGKIAMKLDS----RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K        D +++V     E+ ++L T  G  +RF I+ +    G  + GV+ 
Sbjct: 627 YKSKTAKYAKLKSVEDYVVTVAPIQLED-VILVTYNGYALRFSINDV-PVVGSKAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I                                              
Sbjct: 685 MNLKDSDHIVSAFIANTTSL---------------------------------------- 704

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG-- 839
                       ++LT   +G  KR +      ++R+ +G++     K       + G  
Sbjct: 705 ------------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPV 750

Query: 840 ---------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                     L +    ++ D  +L  +S  G +  V +++   + R + G  +     D
Sbjct: 751 YLEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISD 810

Query: 889 ERVVSV 894
           E V SV
Sbjct: 811 EEVFSV 816


>gi|257867818|ref|ZP_05647471.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257874146|ref|ZP_05653799.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
 gi|257801901|gb|EEV30804.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC30]
 gi|257808310|gb|EEV37132.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC10]
          Length = 820

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 286/889 (32%), Positives = 467/889 (52%), Gaps = 95/889 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKSNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE++DG + +ID+P   LD LM+ I GPDFPTG ++ G+  IK AY TG+G +++
Sbjct: 182 PTHNLGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGILQGKEEIKKAYETGKGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   KRI  IA++RDE+DR G ++
Sbjct: 242 RSKTKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL++++  R EV+ 
Sbjct: 302 VVELKKEANAQGILNYLFKNTELQINYNFNMVAIDNMRPQQVGLKRILESYIKHRREVIE 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R+++ L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+            
Sbjct: 362 KRSRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLV------------ 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I E   I
Sbjct: 410 --------------IQHGFTEEQAEAIVNLQLYRLTNTDITQLQAEAKELAETIAELTTI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  TPR T I   + +++ E    + +E++VVTV+  GYV
Sbjct: 456 LNEENELLKVIKKELREIKKKYTTPRLTEIEAEIQEIKIETQVLVTQEEVVVTVTRDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + M++ D +     ++T   +L  ++ G      V  LP 
Sbjct: 516 KRSSLRSYGASKPE-----EIGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +     + +  I+     +        V  +K+G +++ ++++F   
Sbjct: 571 LKWKDLGEHISQTVMTLAQDEM--IIGVFAYKEIDPLKNFVLISKNGMIKQTRMTEFEPW 628

Query: 669 N---RSGKIAMKLDSR-DEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V     T+E D+ L + L   +R+ ++ +    G  + 
Sbjct: 629 RTYKTRPMTIMKLKDETDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEV-PVVGPKAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D +I+  +V                                         
Sbjct: 688 GVKAMNLKADDYLINGLLVYSEGDTP---------------------------------- 713

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+ ++++G  KR  + +     R+ +G+      K N    +V
Sbjct: 714 -----------------IVLITQRGAAKRMLAQEITQLGRAKRGLMVLRELKKNPH-RVV 755

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +    +N Q+++ + KG    V  N+I I  R + G  I       ++
Sbjct: 756 YMGN-GENQQLLVTNQKGQAFEVITNQIPINDRTSNGSFIMDEKTGGQI 803



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 74/248 (29%), Gaps = 65/248 (26%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           + G V+R+ L  +          + +   D +L        + +LL T  G  +  P+  
Sbjct: 511 RDGYVKRSSLRSYGASKPEE---IGMKEGDSLLYSNQMNTLDHLLLVTNKGNTIYRPVHE 567

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +               L   D                                       
Sbjct: 568 LP-------------DLKWKD---------------------------------LGEHIS 581

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
            ++   +  E  I     +E+   + F+L +S+ G  K+T   +F          R    
Sbjct: 582 QTVMTLAQDEMIIGVFAYKEIDPLKNFVL-ISKNGMIKQTRMTEFEP-------WRTYKT 633

Query: 833 SK------INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                    +E   LV VF  +  ++  + LVS     +R  +NE+ +      GV   +
Sbjct: 634 RPMTIMKLKDETDELVNVFLTDQTEEMDVFLVSHLAFGLRYSLNEVPVVGPKAAGVKAMN 693

Query: 885 TAKDERVV 892
              D+ ++
Sbjct: 694 LKADDYLI 701


>gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
 gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2]
          Length = 820

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 288/905 (31%), Positives = 461/905 (50%), Gaps = 97/905 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E +  I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K 
Sbjct: 2   EHKNNIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKG 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY+A+ RM+QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 62  FRKSAKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ KDTV+   N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL EV+DG + +ID+P+  LD LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 182 PTHNLSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGILQGKEEIKKAYETGRGKVIL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV+ EIPY+VNKA +++K+ E+   K+I  IA++RDE+DR G ++
Sbjct: 242 RSKTRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A  ILN L++ T LQ  ++ NMVA++  +P++  L  IL+++V  R EV+ 
Sbjct: 302 VVELKKDANAQGILNYLFKNTELQINYNFNMVAIDEMRPQQVGLKHILESYVKHRREVIA 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y L KA+ R H++ GL  A++ LDEV+  IR S + + A+  L+ +          
Sbjct: 362 KRSRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQH--------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I+E   I
Sbjct: 413 -----------------GFTEEQAEAIVTLQLYRLTNTDITQLQAEAQELAETIRELTKI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTVSHLGYV 548
           L+  + LL +IK+EL  +K +  + R T I   + +++ E    + +ED+VVTV+  GYV
Sbjct: 456 LNEETELLKVIKKELREIKKKYHSDRMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  Y A +        + M++ D +      ST   +L  ++ G V    +  LP 
Sbjct: 516 KRSSLRSYGASKPE-----ELGMKEGDALLYSGQASTLDHLLLVTNKGNVIYRPIHELPD 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +   +         TI+     +        V  +K+G +++ ++++F   
Sbjct: 571 LKWKDLGEHISQTV--MNLATEETILAVFTYQELDPQKNFVLISKNGMIKQTRMTEFEPW 628

Query: 669 NR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     MKL    DE+++V    Q    D+ L +     +R+P++ +    G  + 
Sbjct: 629 RTYKSRPLTMMKLKDEADELVNVYLADQNEPLDVFLVSYRAFGLRYPLAEV-PVVGPKAA 687

Query: 723 GVRGISLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           GV+ ++L + DQ++  + +    D                 + IS        L     +
Sbjct: 688 GVKAMNLKEDDQIVNGLLVYSEGDTPVIMVTQRGAVKRMLAQEISQLGRAKRGLMVLREL 747

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           + N            +  ILT ++KG                                  
Sbjct: 748 KKNPHRIVYMGSGENQSLILT-TQKG---------------------------------- 772

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                               +I +  N+I I  R + G  +        +  V R+ +  
Sbjct: 773 -------------------QMIEIETNQIPINDRTSNGSFVTDEKSGGLIHEVARVIDPA 813

Query: 902 IVDEA 906
           I +++
Sbjct: 814 IQEDS 818


>gi|73916900|gb|AAZ93318.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 451/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|73916898|gb|AAZ93317.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 822

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 282/884 (31%), Positives = 456/884 (51%), Gaps = 82/884 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDE 454

Query: 495 SR-LLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            R +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 455 RRTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 515 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 570 KDIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 627

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 628 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 687 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 747 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 765

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 809



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 144/533 (27%), Gaps = 75/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L         +       +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV-------AIIGDERRTMYNLM 462

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 463 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 516

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 517 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 565

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 566 -----DIRWKD----------------------------------IGEHLSQTITNFETN 586

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 587 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 643

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 644 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 695


>gi|28896140|ref|NP_802490.1| DNA topoisomerase IV subunit A [Streptococcus pyogenes SSI-1]
 gi|28811390|dbj|BAC64323.1| putative DNA topoisomerase IV, subunit C [Streptococcus pyogenes
           SSI-1]
          Length = 821

 Score =  625 bits (1611), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/890 (31%), Positives = 440/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 4   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 64  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 124 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 184 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 243

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 244 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 303

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 304 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 364 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 408 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 458 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 517

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 518 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 573 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 629

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 630 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 688

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S   V         +   +K M+      +        +  +   + +    
Sbjct: 689 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFL 748

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 749 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 770

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 771 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 819


>gi|223932481|ref|ZP_03624483.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
 gi|223898935|gb|EEF65294.1| DNA topoisomerase IV, A subunit [Streptococcus suis 89/1591]
          Length = 805

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 279/876 (31%), Positives = 438/876 (50%), Gaps = 86/876 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R    IE+    ++
Sbjct: 181 MIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSRCEIEQLKAGKK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IELK+ +    IL
Sbjct: 241 QIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIELKKDSDEQTIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+K+   KA  R 
Sbjct: 301 NYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARSKFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+     +  ++K+E
Sbjct: 395 VSYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGDERTMFNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +   PR + + +     +++    IV E+  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  L    T   +L F++LG V    V  L     +  G+ L   L
Sbjct: 512 --TLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQTL 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR---SGKIAMKLD 679
                   +  + F E   ++        T++G ++R +  +F              KL 
Sbjct: 570 ---MNFDTSEEIIFAELVENFEEGTYFAVTQYGQIKRVERKEFTPWRTYKSKSTKYAKLK 626

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             ++++   +    +DI+L T+ G  +RF I  +    G  + GV+ ++L  GD V++  
Sbjct: 627 DAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEV-PIIGAKAAGVKAVNLKDGDVVVAAF 685

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I   +      +    K M+ +   ++   +    +  +   + +        L  +  F
Sbjct: 686 ISNTSSVYLLTQRGSFKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFAAGPVLTDQGDF 745

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QII-L 855
            L  +                                            +++   QI+ +
Sbjct: 746 DLFSTAN------------------------------------------EDETTSQILHV 763

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 764 QSKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 799



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 74/260 (28%), Gaps = 38/260 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T    +++        F     S           EI +     +E   +  TK G   R 
Sbjct: 446 TMFNLMKKELREVKKQFGNPRLSELQ--DQAETIEIDTASLIVEEETFVSVTKAGYIKRT 503

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S +     R             DQ+I   +     H     +      + +  
Sbjct: 504 SPRSFNASTLEEMGKR-----------DDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHE 552

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
              +   D  E  S    +                +E     V++ G  KR    +F   
Sbjct: 553 LTDIRWKDIGEHLSQTLMNFDTSEEIIFAELVENFEEGTYFAVTQYGQIKRVERKEFTP- 611

Query: 821 NRSGKGIRATDVSK------INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
                  R             +    ++ V PV  +D I+L+++KG  +R  + E+ I  
Sbjct: 612 ------WRTYKSKSTKYAKLKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIG 664

Query: 875 RATKGVVIFSTAKDERVVSV 894
               GV   +    + VV+ 
Sbjct: 665 AKAAGVKAVNLKDGDVVVAA 684



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 16/131 (12%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +   +    E     L ++E+  ++V++ G+ KRTS   F  S          +     +
Sbjct: 469 ELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNAS--------TLEEMGKRD 520

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR---IASRATKGVVIFSTAKDERV 891
              L+ +        ++L ++ G +I  PV    +IR   I    ++   + +    E +
Sbjct: 521 DDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQ--TLMNFDTSEEI 578

Query: 892 VSVERIRESEI 902
           +  E +   E 
Sbjct: 579 IFAELVENFEE 589


>gi|24379629|ref|NP_721584.1| DNA topoisomerase IV subunit A [Streptococcus mutans UA159]
 gi|24377581|gb|AAN58890.1|AE014957_3 topoisomerase IV, subunit A [Streptococcus mutans UA159]
          Length = 818

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 267/799 (33%), Positives = 416/799 (52%), Gaps = 40/799 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQIMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIADYLLQDIDKNTVAWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDTVVYLIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QIV TEIPY+VNKAA+++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 242 TEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDREGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    ILN L++YT LQ  ++ NMVA++ Y P +  +I +L +++A R++++V R+
Sbjct: 302 LKKDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRKDIIVARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE   L   I     I+  
Sbjct: 406 ----------KISYDFSEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLNAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + +      ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMYNVMKRELREVKKKFGNPRLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D V  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNAS-----TVEELGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +     +   +    +       AT+ G ++R +  D       
Sbjct: 571 KEIGEHLSQNITNFATDEEILYVDLVD---HFEEGTYYAATRLGQIKRFERRDLTPWRSY 627

Query: 672 GKIA---MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              A    KL   D+ +   +  + +D++L T  G  +RF I  +    G  + G++ I+
Sbjct: 628 KSKAAKYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEV-PIVGPKAAGIKAIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD + +  I          +   +K M+     ++   +    +  +   + +    
Sbjct: 687 LKEGDSLATAFIANTDSIYILTQRGSLKRMTTNLIPVTSRAKRGLQVLRELKSKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKG 807
                      I   +  G
Sbjct: 747 AGPVFSEAAGEIDLFTTVG 765



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 70/527 (13%), Positives = 159/527 (30%), Gaps = 34/527 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  V   +   V     V +I     N +      ++   +  
Sbjct: 235 RVVVRSRTEIENLKGGKKQIVATEIPYEVNKAALVKKIDDVRLNNKVPGIAEVRDESDRE 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D+      +     +++Q      ++ +       +G   +     +   
Sbjct: 295 GLRIAIELKKDADEQTILNYLFKYTDLQINYNFNMVAIDNYTPRQVGIIPMLTSYIAHRK 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I               +   E L     +       I          D      +    
Sbjct: 355 DIIVARSKFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKISYDF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 + +T L                 +Y   
Sbjct: 412 SEEQAEAIVTLQLYRLTNTDIVTLENEEAELRERITTLN--------AIIGDERTMYNVM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L++ +  T  +              V  T+ G ++R   
Sbjct: 464 KRELREVKKKFGNP------RLSELQAETQTIEIDTASLIVEEETYVSVTRGGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI-----RVFA 717
             F          +     D+++ ++      ++L+ T LG  +  PI  +     +   
Sbjct: 518 RSFNASTVEE---LGKRDDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHELADIRWKEIG 574

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S  +   + A  ++++ + +V H +         +  +    R          S   
Sbjct: 575 EHLSQNIT--NFATDEEILYVDLVDHFEEGTYYAATRLGQIKRFERRDLTPWRSYKSKAA 632

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
             +      ++  +   +K   ++ ++ +G+  R +  +  I      GI+A ++ +   
Sbjct: 633 KYAKLKGDDDQVIRISPIKLDDVMLITARGYALRFNIEEVPIVGPKAAGIKAINLKEG-- 690

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +L   F  N  D I +++ +G+L R+  N I + SRA +G+ +  
Sbjct: 691 -DSLATAFIAN-TDSIYILTQRGSLKRMTTNLIPVTSRAKRGLQVLR 735



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 78/270 (28%), Gaps = 41/270 (15%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S   A       EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNVMKRELREVKKKFGNPRLSELQAET--QTIEIDTASLIVEEETYVSVTRGGYIKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S +     R             D VI   +           +      + +  
Sbjct: 516 SPRSFNASTVEELGKR-----------DDDDVIFIQNAKTTQELLIFTNLGNVIYRPIHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TSS 814
              +   +  E  S    +                +E      +  G  KR      T  
Sbjct: 565 LADIRWKEIGEHLSQNITNFATDEEILYVDLVDHFEEGTYYAATRLGQIKRFERRDLTPW 624

Query: 815 YDFRISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
             ++          A   +K   +   ++ + P+  +D ++L++ +G  +R  + E+ I 
Sbjct: 625 RSYKSK--------AAKYAKLKGDDDQVIRISPIKLDD-VMLITARGYALRFNIEEVPIV 675

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIV 903
                G+   +  + + + +   I  ++ +
Sbjct: 676 GPKAAGIKAINLKEGDSLAT-AFIANTDSI 704


>gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021]
 gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM
           43021]
          Length = 831

 Score =  624 bits (1610), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/896 (31%), Positives = 421/896 (46%), Gaps = 115/896 (12%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
               +DE+ E+ I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +M
Sbjct: 6   TTPPTDEDFEERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEM 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK +R+ G+VMGK HPHG+ AIYDAL RMAQ +S+RL LI+G GNFGS D D
Sbjct: 66  GLRPDRGHVKSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-D 124

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE RL  AA  ++  + +DTVDF+PNYDG   EP V+ + +PN+LVNG  GIA
Sbjct: 125 LPAAMRYTEARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIA 184

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV     +I  PD  LD LM  + GPD PTG  I+G  GI++AYA 
Sbjct: 185 VGMATNMAPHNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTIIGLDGIRDAYAK 244

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG+  +R    +E+ S  R+ I+VTE+P+ V    ++ KI ELV  K++  I+DL+D S
Sbjct: 245 GRGTFRMRAKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLS 304

Query: 304 D-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           D  +G  +VIE+K G   + +L +LYR T ++  F +N VAL   +P    L  +L+ +V
Sbjct: 305 DRHKGLNLVIEIKNGFIPEAVLEELYRLTPMEETFGINNVALVEGQPRTLGLRELLQVYV 364

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +VV RR+ Y   K  DR H++ GL IA+ N+DEV+++IR S +   AR  LM+   
Sbjct: 365 DHRLDVVRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLME--- 421

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE+Q   IL+  L RLT   + ++  E  +L  
Sbjct: 422 -----------------------VFELSEIQAAYILDTPLRRLTRFDKLELDGEKETLES 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMV 539
           EI E   ILSS  +L  ++  EL  V     TPRRT ++E      +         +  +
Sbjct: 459 EIAELTAILSSEDKLRKVVSDELAQVSKTFGTPRRTVLLESSGVTRNASVPLEVADDPCL 518

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  S  G + R   +   A          +          +   +    V   ++ G + 
Sbjct: 519 VLFSSTGLLARTTDASPLAGEGDRSAHDVL--------VSVVNSTVRGEVGVVTNQGRMI 570

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES-SWNNLYVVFATKHGNVR 658
           + +V  LP   P A   +L     +++   ++         S   +   +   T  G V+
Sbjct: 571 RVQVVDLPTLPPSANPPSLSGGHPVSEYVTLSPGETVVGIGSLDPDGPGLALGTAQGVVK 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R          R     + L   D ++ +VE  ++++D++  T   Q +R+P   +R   
Sbjct: 631 RVVPDYPAN--RDDFEVIGLKDGDTVVGAVELTSEDHDLVFITSEAQLLRYPAVNVRP-Q 687

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + G+ G+ L  G  VI   +V  A       I                         
Sbjct: 688 GRPAGGMAGVRLDGGATVIWFGVVDPARESRVVTIAGSSTALPG---------------- 731

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                     ++ G  K +   ++    R+  G+R     K   
Sbjct: 732 --------------------------TQIGGAKISDYAEYPAKGRATGGVRVQRFLK--- 762

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-----------RATKGVVI 882
                        + ++L++  G     P   +               R   GV +
Sbjct: 763 ------------GEDVLLLAWAGPA---PARAVSTVGKPVPLPEELGRRDGSGVRL 803



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTL 862
           + +G  KR    D+   NR    +         +   +V    +   D  ++ ++ +  L
Sbjct: 624 TAQGVVKRV-VPDYPA-NRDDFEVIGLK-----DGDTVVGAVELTSEDHDLVFITSEAQL 676

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +R P   +R   R   G+          V+    +  +
Sbjct: 677 LRYPAVNVRPQGRPAGGMAGVRLDGGATVIWFGVVDPA 714



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 89/272 (32%), Gaps = 33/272 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  +V  +  G + R   +  +               D ++SV   T   ++ + T  G
Sbjct: 514 DDPCLVLFSSTGLLARTTDASPLAGEGDRSA------HDVLVSVVNSTVRGEVGVVTNQG 567

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +  +            S G      ++L+ G+ V+ +        D D     +
Sbjct: 568 RMIRVQVVDLPTLPPSANPPSLSGGHPVSEYVTLSPGETVVGI-----GSLDPDGPGLAL 622

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D            ++   +     EL  ++  ++ ++ +    R  + 
Sbjct: 623 GTAQGVVKRVVPDYPANRDDFEVIGLKDGDTVVGAVELTSEDHDLVFITSEAQLLRYPAV 682

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI----- 870
           + R   R   G+    +   +    ++    V+   +  +V+  G+   +P  +I     
Sbjct: 683 NVRPQGRPAGGMAGVRL---DGGATVIWFGVVDPARESRVVTIAGSSTALPGTQIGGAKI 739

Query: 871 ------RIASRATKGVVIFSTAKDERVVSVER 896
                     RAT GV +    K E V+ +  
Sbjct: 740 SDYAEYPAKGRATGGVRVQRFLKGEDVLLLAW 771


>gi|73916850|gb|AAZ93293.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 451/883 (51%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 145/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V++ +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
 gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111]
          Length = 819

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 282/905 (31%), Positives = 442/905 (48%), Gaps = 114/905 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTSLGQIKRFERQEISPWRT 626

Query: 671 SGK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                    KL + D+ +      Q  D++L T  G  +RF I+ +    G  + GV+ +
Sbjct: 627 YKSKTAKYAKLKNVDDYVVTVAPIQLEDVILVTYNGYALRFSINDV-PVVGSKAAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D ++S  I                                               
Sbjct: 686 NLKDSDHIVSAFIANTTSL----------------------------------------- 704

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG--- 839
                      ++LT   +G  KR +      ++R+ +G++     K       + G   
Sbjct: 705 -----------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPVY 751

Query: 840 --------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                    L +    ++ D  +L  +S  G +  V +++   + R + G  +     DE
Sbjct: 752 LEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISDE 811

Query: 890 RVVSV 894
            V SV
Sbjct: 812 GVFSV 816


>gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R]
 gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R]
          Length = 819

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/906 (31%), Positives = 442/906 (48%), Gaps = 116/906 (12%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G + +R  
Sbjct: 182 NLAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVAVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G ++QI+VTEIPY+VNK+ ++++I ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A   ++LN L++YT LQ  ++ NMVA++ Y P++  L  IL +++A R E+++ R+
Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAIDDYTPKQVGLSRILTSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      +R E   L  +I     I+S 
Sbjct: 406 ----------KVSYEFSEAQAEAIVTLQLYRLTNTDIVTLREEEEELRQQITMLKAIISD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +    RR+ + E     +++    I+ ED  V+V+  GYVKR 
Sbjct: 456 ERTMYNVMKRELREVKKKFANTRRSELQELAETIEIDTASLIIEEDTYVSVTRGGYVKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  R++D +  +    T   +L F++LG +    V  L     
Sbjct: 516 SPRSFNAS-----TVDELGKREDDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRW 570

Query: 612 QARGKAL-INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
           +  G+ L  N+++    E I       +             T  G ++R +  +      
Sbjct: 571 KDVGEHLSQNLVNFASNEEIIYAELVDDFT----KETYFAVTSLGQIKRFERQEISPWRT 626

Query: 671 SGKIAMKLDS----RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K        D +++V     E+ ++L T  G  +RF I+ +    G  + GV+ 
Sbjct: 627 YKSKTAKYAKLKSVEDYVVTVAPIQLED-VILVTYNGYALRFSINDV-PVVGSKAAGVKA 684

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L   D ++S  I                                              
Sbjct: 685 MNLKDRDHIVSAFIANTTSL---------------------------------------- 704

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-----EIG-- 839
                       ++LT   +G  KR +      ++R+ +G++     K       + G  
Sbjct: 705 ------------YLLT--HRGSLKRMAIDVIPTTSRANRGLQVLRELKSKPHRVFKAGPV 750

Query: 840 ---------ALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                     L +    ++ D  +L  +S  G +  V +++   + R + G  +     D
Sbjct: 751 YLEDSSFEFDLFSSVSNHEGDTFVLEIMSKTGKVYDVDLSQWSFSERTSNGSFVSDKISD 810

Query: 889 ERVVSV 894
           E V SV
Sbjct: 811 EEVFSV 816


>gi|312864636|ref|ZP_07724867.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
 gi|311099763|gb|EFQ57976.1| DNA topoisomerase IV, A subunit [Streptococcus downei F0415]
          Length = 828

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 264/793 (33%), Positives = 407/793 (51%), Gaps = 40/793 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 11  SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 70

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 71  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 130

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ KDTV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 131 RLSEIAGYLLQDIDKDTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 190

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  + +ID+P   +D LME + GPD PTGA+I G   I+ AY TG+G IV+R  
Sbjct: 191 NLAEVIDAVIYMIDHPKAKVDKLMEFLPGPDLPTGAIIQGADEIRKAYETGKGRIVVRSR 250

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +EQIVVTEIPY VNKA +++KI ++    ++  IA++RDESDR+G R+ IE
Sbjct: 251 TEIEPLKAGKEQIVVTEIPYDVNKAVLVKKIDDVRINNKVPGIAEVRDESDREGLRIAIE 310

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  ++ IL +++A R +++V R+
Sbjct: 311 LKKDADSQAILNYLLKYTDLQINYNFNMVAIDNFTPRQVGIVPILTSYIAHRRDIIVARS 370

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 371 KFDKKKAEKRLHIVEGLIRVLSILDEVIALIRDSENKADAKENL---------------- 414

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      +  E  +L  EI     I+  
Sbjct: 415 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDIVTLEEEDAALREEIATLKAIIGD 464

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PRR+ +       +++    IV ED  V+++  GY+KR 
Sbjct: 465 ERTMFNLMKRELREVKKKFGNPRRSELQAQAQAIEIDTASLIVEEDTYVSLTRSGYLKRT 524

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               Y A          +  RD+D    +    T   +L F++LG V    V  L     
Sbjct: 525 SPRSYNASTPE-----ELGKRDDDKAVLIAPAKTTQHLLIFTNLGNVIYRPVHELTDIRW 579

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   L+    +         +D +          TK G ++R   ++F      
Sbjct: 580 KDIGEHLSQTLTNFATDEEVLYAEIIDDFT---PETYFAVTKMGQIKRVDRTEFQPWRSY 636

Query: 672 GK---IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   ++ +      + + +++ T+ G  + FPI  +    G  + GV+ I+
Sbjct: 637 KTKSSKYAKLKGDEDQVVAMAPIKLDAVMVITEKGYALHFPIEEV-PVVGSKAAGVKAIN 695

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L  GD V +  I          +   +K M+     ++        +  +   + +    
Sbjct: 696 LKDGDSVKAAFIANTKSFFILTQRGSLKRMALDDIPLAKRAGRGLQVLRELKSKPHRVFL 755

Query: 789 RCQELKLKEQFIL 801
               L       L
Sbjct: 756 AGPVLSDANTQDL 768



 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 96/274 (35%), Gaps = 32/274 (11%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQIN------RSGKIAMKLDSRDEILSVETCTQ--ENDI 696
             +++  T  GNV    + +   I          +      + +E+L  E          
Sbjct: 554 TQHLLIFTNLGNVIYRPVHELTDIRWKDIGEHLSQTLTNFATDEEVLYAEIIDDFTPETY 613

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYM 755
              TK+GQ  R   +  + +    +   +   L    DQV++MA +            Y 
Sbjct: 614 FAVTKMGQIKRVDRTEFQPWRSYKTKSSKYAKLKGDEDQVVAMAPIKLDAVMVITEKGYA 673

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            H   +   + G         N    +   +            FIL  +++G  KR +  
Sbjct: 674 LHFPIEEVPVVGSKAAGVKAINLKDGDSVKAAFIANTKSF---FIL--TQRGSLKRMALD 728

Query: 816 DFRISNRSGKGIRATDVSKINEI-----GALVA----------VFPVND--NDQII-LVS 857
           D  ++ R+G+G++     K         G +++             V +  + QI+ ++S
Sbjct: 729 DIPLAKRAGRGLQVLRELKSKPHRVFLAGPVLSDANTQDLDLFSTEVEESKDQQILEVMS 788

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             G L +V + ++ ++ R + G  I  +  DE V
Sbjct: 789 KTGKLEQVNLVDLGLSERTSNGSFISDSISDEEV 822



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 65/254 (25%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
                V  T+ G ++R     +          +     D+ + +        +L+ T LG
Sbjct: 508 EEDTYVSLTRSGYLKRTSPRSYNASTPEE---LGKRDDDKAVLIAPAKTTQHLLIFTNLG 564

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +  P+  +                                                  
Sbjct: 565 NVIYRPVHEL-----------------------------------------------TDI 577

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                 E ++    + + +  +      +    E +   V++ G  KR    +F+     
Sbjct: 578 RWKDIGEHLSQTLTNFATDEEVLYAEIIDDFTPETY-FAVTKMGQIKRVDRTEFQP---- 632

Query: 824 GKGIRATDVSK------INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R+             +   +VA+ P+   D ++++++KG  +  P+ E+ +     
Sbjct: 633 ---WRSYKTKSSKYAKLKGDEDQVVAMAPIKL-DAVMVITEKGYALHFPIEEVPVVGSKA 688

Query: 878 KGVVIFSTAKDERV 891
            GV   +    + V
Sbjct: 689 AGVKAINLKDGDSV 702


>gi|313890155|ref|ZP_07823790.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121516|gb|EFR44620.1| DNA topoisomerase IV, A subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 819

 Score =  624 bits (1609), Expect = e-176,   Method: Composition-based stats.
 Identities = 272/887 (30%), Positives = 451/887 (50%), Gaps = 78/887 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL+D+ K+TV F  N+D + +EP VL A YPN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLEDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTG++I G+  I+ AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYLIDHPKAKLDKLMEFLPGPDFPTGSIIQGQDEIRKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRSGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A    +LN L +YT LQ  ++ NMVA++ Y P +  +  IL +++A R+ +++ R+
Sbjct: 302 LKKDADTQTVLNYLLKYTDLQVNYNFNMVAIDNYTPHQVGIQKILSSYIAHRKSIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ + KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDMAKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++NE   LG  I     I++ 
Sbjct: 406 ----------KISYAFTEEQAEAIVTLQLYRLTNTDIVTLQNEEEELGNLITTLRAIIAD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PRR+++ +     +++    IV E+  V+++  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFGNPRRSQLQKEAETIEIDTASLIVEEETFVSLTQGGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+ LG V    V  L     
Sbjct: 516 SPRSFNAS-----TLEEIGKRDDDSLIFVASAKTTQHLLIFTDLGNVIYRPVHELQDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    +         +D   + +      T+ G ++R + ++       
Sbjct: 571 KEIGEHLSQTITNYGNDEKVLYAELVDD---FKSGTYYSVTQLGQIKRFERAELAPWRTY 627

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              ++K     + +D I++V+    E+ I+L +  G  +RF    +    G  + GV+ +
Sbjct: 628 RSKSLKYAKLKNEQDRIIAVQPILFED-IMLISHQGYALRFSNEEV-PVQGLKTAGVKAM 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L K D + S  +          +   +K               + +     +   N   
Sbjct: 686 NLKKDDYIASAFLAYTDSFFVLTQRGSLK--------------RVATEDIPQTSRANRGL 731

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
              +ELK K   +      G  K  +S             +  D+    +  +  ++   
Sbjct: 732 LVLRELKNKPHRVFLA---GAVKGLASN------------KTIDLFSDPQTDSEASLR-- 774

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                ++++S  G    V +    ++ R + G  I  T  D+ V+S 
Sbjct: 775 -----LLVISKTGQEYLVDLGGYSVSERTSNGTFISDTISDQEVLSA 816


>gi|259046725|ref|ZP_05737126.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
 gi|259036621|gb|EEW37876.1| DNA topoisomerase IV, A subunit [Granulicatella adiacens ATCC
           49175]
          Length = 822

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 301/854 (35%), Positives = 461/854 (53%), Gaps = 62/854 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + + I  +++ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K+
Sbjct: 2   SQIQDIQELNLEDVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMSIDGNTSDKQ 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G +HPHG++++Y+A+ RM+QDW LR +LIE  GN GS+DGDP AA RY
Sbjct: 62  FRKSAKTVGNVIGNFHPHGDSSVYEAMVRMSQDWKLRDVLIEMHGNNGSMDGDPAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL DL K TV+F  N+D + +EP VL ARYPN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSKISEELLKDLDKKTVEFVLNFDDTEEEPTVLPARYPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D  +  ID+P   +  LM+ ++GPDFPTG +I G   ++ AY TGRG +VI
Sbjct: 182 PTHNLGEVIDATIHAIDHPKATVKELMQFVKGPDFPTGGIIQGLEELEQAYETGRGKVVI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G + QI+++EIPY+VNKA +++KI E+   K+I  IA++RDESDR G ++
Sbjct: 242 RSKTKIEPIKGGKSQIIISEIPYEVNKALLVKKIDEIRLNKKIDGIAEVRDESDRTGLQI 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+ELK+ A+A+ ILN L + T LQ  ++ NMVA++  +P +  L  IL +++ F++EV+ 
Sbjct: 302 VVELKKEANAEGILNYLLKNTDLQVNYNFNMVAIDERRPVQVGLKTILTSYINFQKEVIT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRT+Y L KA+DR H++ GL  A++ LDEV+ +IR S + + A+  L++           
Sbjct: 362 RRTQYDLKKAQDRLHIVDGLMKALSILDEVIALIRNSKDKKHAKERLVE----------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   + +Q  AI+ L+L RLT      ++NE   L  +I   L I
Sbjct: 411 ---------------TYDFTMIQAEAIVNLQLYRLTNTDITILQNEKLDLNEQIATFLSI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYV 548
           L S   LL ++K EL  +K +  TPR T+I   + +++ E  ++  +  V V  +  GY 
Sbjct: 456 LKSEKTLLQVMKSELRDLKKKYATPRLTQIQAEIEEIKIETEVLVTEEEVYVVATKQGYY 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV    + +            MR+ D V      ST  +++ F+S G      V  +P 
Sbjct: 516 KRVSPRSFASSAPEEN-----GMREGDEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPE 570

Query: 609 GSPQARGKALINILSLNQGERI-TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              +  G  L   +SL   E I T  +   + + S+ +  VVF TK G V++   ++F  
Sbjct: 571 AKWKDVGNHLSQSISLGSNEVILTGFVKAKDSDDSYKDWTVVFFTKEGLVKQTLFNEFTT 630

Query: 668 IN---RSGKIAMKLD-SRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSV 722
                     AMKL  + DE++ V     E+ ++ + T  G  +R+ +S I    G  + 
Sbjct: 631 YRGYKTRTSNAMKLKTTTDEVVKVVVTNPESLEVFIVTHCGFGLRYELSEI-PVVGTVAS 689

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L K D V    +               K +SA      G  +    L+      
Sbjct: 690 GVKAINLRKEDFVAGAMV----------YSLEHKVVSAFLTTQRGAVKRFNVLEISMLTR 739

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG----IRATDVSKINEI 838
                   +ELK K   ++ +     G+ TSS ++ I   +G G    +R  D++ ++  
Sbjct: 740 AKRGLMVLRELKTKPHRVVFLD----GEITSSSEYTII--AGNGETKVVRPMDLTLVDRT 793

Query: 839 GALVAVFPVNDNDQ 852
                   + DNDQ
Sbjct: 794 SN--GSMLLGDNDQ 805



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 85/246 (34%), Gaps = 20/246 (8%)

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           TK G  +R     F            +   DE++  +  +  ++++L T  G  +  P+ 
Sbjct: 510 TKQGYYKRVSPRSFASSAPEEN---GMREGDEVVLCQKASTLDNLILFTSKGNYLHLPVH 566

Query: 712 AIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE-------RICYMKHMSAQ 761
            I     ++ VG    + ISL   + +++  +      D  +           +   +  
Sbjct: 567 EIPEAKWKD-VGNHLSQSISLGSNEVILTGFVKAKDSDDSYKDWTVVFFTKEGLVKQTLF 625

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
               +    +  +              +      +   +  V+  GFG R    +  +  
Sbjct: 626 NEFTTYRGYKTRTSNAMKLKTTTDEVVKVVVTNPESLEVFIVTHCGFGLRYELSEIPVVG 685

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQI---ILVSDKGTLIRVPVNEIRIASRATK 878
               G++A ++ K +    +      +   ++    L + +G + R  V EI + +RA +
Sbjct: 686 TVASGVKAINLRKEDF---VAGAMVYSLEHKVVSAFLTTQRGAVKRFNVLEISMLTRAKR 742

Query: 879 GVVIFS 884
           G+++  
Sbjct: 743 GLMVLR 748



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 68/179 (37%), Gaps = 15/179 (8%)

Query: 726 GISLAKGDQVISM-------AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           G+   +GD+V+          ++L         +   +   A+ + +     +  SL ++
Sbjct: 532 GMR--EGDEVVLCQKASTLDNLILFTSKGNYLHLPVHEIPEAKWKDVGNHLSQSISLGSN 589

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS--GKGIRATDVSKIN 836
             +     + +  +   K+  ++  +++G  K+T   +F  + R    +   A  +    
Sbjct: 590 EVILTGFVKAKDSDDSYKDWTVVFFTKEGLVKQTLFNEF-TTYRGYKTRTSNAMKLKTT- 647

Query: 837 EIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
               +V V   N    ++ +V+  G  +R  ++EI +      GV   +  K++ V   
Sbjct: 648 -TDEVVKVVVTNPESLEVFIVTHCGFGLRYELSEIPVVGTVASGVKAINLRKEDFVAGA 705


>gi|15902801|ref|NP_358351.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116515631|ref|YP_816238.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae D39]
 gi|15458351|gb|AAK99561.1| Topoisomerase IV subunit A [Streptococcus pneumoniae R6]
 gi|116076207|gb|ABJ53927.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae D39]
          Length = 826

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/884 (31%), Positives = 452/884 (51%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 5   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 65  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 125 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 185 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R  ++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 365 RFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 409 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK    TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 459 ERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 519 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 574 KDIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 631

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 632 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 690

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 691 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 750

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 751 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 769

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 770 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 813



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 142/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 238 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 297

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 298 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 357

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 358 EVILARSRFDKEKAEKRLRIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 414

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 415 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 466

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L                 L+  E     +              V  TK G ++R   
Sbjct: 467 KKELREVKKNFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 520

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 521 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 569

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 570 -----DIRWKD----------------------------------IGEHLSQTITNFETN 590

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 591 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 647

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 648 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 699


>gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 830

 Score =  624 bits (1608), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/806 (34%), Positives = 432/806 (53%), Gaps = 41/806 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  +  +   + +  + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MKKKTV-EEAVDHANVLTSPLEEIMGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G  W+K Y K A+  G V+G YHPHG++++YDA+ RM+QDW +R   I+ QGN GS+
Sbjct: 60  FVDGNTWDKAYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL K + +LL D+ KDTV + PN+D +  EP VL ARYPN+LVNG  
Sbjct: 120 DDDPAAAMRYTEARLGKISEYLLQDIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGIT 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATNIP HNLGE +D  +  I +PD  LD LME ++GPDFPTG ++ G  GIK+A
Sbjct: 180 GIAAGYATNIPPHNLGECIDASIYRIQHPDCTLDDLMEFVQGPDFPTGGIVQGLDGIKDA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + +G+G I++R    IE+T    +QI+V EIPY+V K+ M++KI ++   K+I  I D+R
Sbjct: 240 FTSGKGRIMVRSKVSIEQTKT-VQQIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVVI+LK+ A A +ILN LY+ T LQ  ++ N++A+   +P +  L  +L A
Sbjct: 299 DESDRNGLRVVIDLKKDADAQLILNYLYKNTDLQVSYNYNVIAIKDKRPVQMGLAAMLDA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+A R EV++RR+ + L+K   R H+L GL  AV+ LDE++ +IR S +   ++ ++++ 
Sbjct: 359 FIAHRREVILRRSAFDLDKKEKRCHILEGLIKAVSILDEIIALIRSSKDKADSKVKIIE- 417

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        SE Q  AI+ +RL RL+      +R E  +L
Sbjct: 418 -------------------------AFGFSEPQAEAIVTMRLYRLSNTDITQLREEFANL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDM 538
             EIKE  +IL    +L  ++  EL  VK    TPR T        + ++    I +E +
Sbjct: 453 QAEIKELHEILEDPKKLKKVMVAELKEVKKAFPTPRLTKIEHEIEEIVIDKVAMIPQEQV 512

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           + T+S  GYVKRV +  Y A            +++ D +     V+T  ++LFF+S G  
Sbjct: 513 MFTISRDGYVKRVSMRSYGAANDA-----MTGIKEGDHLIGYGEVNTLDNILFFTSKGTY 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+ +     +  G  + + + +   E+IT      + ++   N Y++  T+HG V+
Sbjct: 568 GYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAFIVKDFKT---NSYMISITRHGLVK 624

Query: 659 RNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  + ++     +  ++ MKL   DE++      +E++IL+ +K G   R+PIS I   +
Sbjct: 625 KTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEILIASKKGYITRYPISLIPATS 684

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R S GV+ ++L + D++ S  I  + +               +   I            
Sbjct: 685 PR-SKGVKAMNLVE-DEIASALIYNNDNRQLVVFSDDCACKRMKLTDIDVTGRPTKGSML 742

Query: 778 DSSVEGNISEERCQELKLKEQFILTV 803
              V+          L      I+  
Sbjct: 743 CKKVKSKPYHIAYISLHDLNDEIVIA 768



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 98/276 (35%), Gaps = 28/276 (10%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
                  +   ++ G V+R  +  +   N        +   D ++        ++IL  T
Sbjct: 506 MIPQEQVMFTISRDGYVKRVSMRSYGAAND---AMTGIKEGDHLIGYGEVNTLDNILFFT 562

Query: 701 KLGQCVRFPISAI------RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
             G     P+  +       + +  NS     I +   +++    IV     +    I  
Sbjct: 563 SKGTYGYVPVYEVDDAKWKEIGSHINSK----IKITSDEKITDAFIVKDFKTNS-YMISI 617

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            +H   ++  I        +    +       E     +  +E  IL  S+KG+  R   
Sbjct: 618 TRHGLVKKTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEILIASKKGYITRYPI 677

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIA 873
                ++   KG++A ++ +      + +    N+++ Q+++ SD     R+ + +I + 
Sbjct: 678 SLIPATSPRSKGVKAMNLVE----DEIASALIYNNDNRQLVVFSDDCACKRMKLTDIDVT 733

Query: 874 SRATKGVVIFSTAKDERVVS----VERIRESEIVDE 905
            R TKG ++       +V S    +  I   ++ DE
Sbjct: 734 GRPTKGSMLCK-----KVKSKPYHIAYISLHDLNDE 764



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 87/219 (39%), Gaps = 15/219 (6%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V    QE  +   ++ G   R  + +     G  +  + GI   +GD +I    V   D 
Sbjct: 504 VAMIPQEQVMFTISRDGYVKRVSMRS----YGAANDAMTGIK--EGDHLIGYGEVNTLDN 557

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNISEERCQELKLKEQFILTV 803
                            +     +EI S  N     + +  I++    +      +++++
Sbjct: 558 ILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAFIVKDFKTNSYMISI 617

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +  G  K+T+  ++ + +R+ K +    + +      +V  +   + D+I++ S KG + 
Sbjct: 618 TRHGLVKKTAICEYEV-SRNNKTMSNMKLLE---DDEVVQTYVAYEEDEILIASKKGYIT 673

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           R P++ I   S  +KGV   +  +DE  ++   I  ++ 
Sbjct: 674 RYPISLIPATSPRSKGVKAMNLVEDE--IASALIYNNDN 710


>gi|300854106|ref|YP_003779090.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
 gi|300434221|gb|ADK13988.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528]
          Length = 954

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 296/949 (31%), Positives = 463/949 (48%), Gaps = 85/949 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++ +     ++  I  + I + M ++YL YA+ V   RA+PD+RDGLKPVHRRI++G 
Sbjct: 1   MVKNTVIP---KDNNIIKIPIEEAMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRIIYGS 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    +K Y K ARI G+++GKYHPHG+ ++YDA+  +AQD++ R+ +I+G GN+GS 
Sbjct: 58  YMLKAFPDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPIIDGHGNWGSQ 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  ++ D+ K  V+   NY GS +EP VL ARYPN+LVNG  
Sbjct: 118 DGDSAAAMRYTEARLTPIAMEMIRDIEKGVVNMVDNYSGSEKEPEVLPARYPNLLVNGAF 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HNL EV+D  VA IDN DI ++ LM  I+GPD PTG +I+G+  + +A
Sbjct: 178 GIAVGLATNIPPHNLREVIDATVAYIDNRDITVEELMNYIKGPDLPTGGIIIGKKSMISA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR----IVDI 296
           Y TG G + +R  + IEK    R  IV+TE PY+ +KA +L+ I+E+  +KR    +  I
Sbjct: 238 YETGEGKVTLRAKTSIEKLDSGRLGIVITEFPYRRSKAKLLQVISEMTADKRYARALEPI 297

Query: 297 ADLRDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
           +D+RDESDR G R VIE K+      A  IL  L + T LQ   S NMVAL   KP    
Sbjct: 298 SDIRDESDRSGIRAVIEFKKSTDMKLAQKILKYLLKKTDLQCNISFNMVALGDGKPITMG 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  ILK +V +++E++ +RTK  L +A+ R H++ G   A+  +DE+++ IR S + + A
Sbjct: 358 LKLILKYYVEYQKEIITKRTKRELEEAKKRFHIVEGFIKALGIMDEIIKTIRSSKSKKDA 417

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
              LM++                             +  Q  AILEL L RLTGL  D  
Sbjct: 418 ASNLMEQ--------------------------FDFTYPQAEAILELMLYRLTGLEIDSF 451

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E   L   IK+   IL S   +L +IK+EL+ V ++    RRT IVE      ++ ++
Sbjct: 452 EKEHEKLLKVIKKLTKILESEKEILKVIKKELIEVGEKYGDDRRTAIVEEDEKAKIDVDE 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I+ ED+V+T+S  GY+KR  L  Y            +  R+ DF       ST  +++F
Sbjct: 512 IIIDEDIVITMSKEGYIKRTSLKSYNRSSG---KVEDIEYREGDFNEYFINSSTKDTLMF 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G +Y+ +   +P    + +G+ L N++          I      +        VF 
Sbjct: 569 FTDSGDMYRIRGMDIPEFKWKEKGEKLDNLIK-GIDLEKNHITAVYSIKDFNLQKDFVFF 627

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT---TKLGQCVRF 708
           T  G ++R  +  F+  N +  +A+KL + ++++ VE   +  ++      TK G     
Sbjct: 628 TSIGGIKRTGIESFVT-NYTKLMALKLKNGEKLIGVELVDRSANVEFIKVETKSGLEFTV 686

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG- 767
               I     RN V    ++L   D  + M      +            +          
Sbjct: 687 RSPEIN-LEDRNIVTTPLVTLQGEDFAVKMDFSTEPEYKEFYININKSGIIKVLNSGKSS 745

Query: 768 -------------------------------DTEEITSLKNDSSVEGNISEERCQELKLK 796
                                          D   I       +++     +        
Sbjct: 746 KSVFTNSSSYILIFTLDGEVLSIPAFMLQNVDNSGIDIKVLMKNIDVGNILKIISVEDFD 805

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIIL 855
             ++   ++ G  K+T+  +F+    +G    +T     ++  +LV V   +  + +I L
Sbjct: 806 CGYVYFFTQYGMVKKTALMEFKQI--AG---CSTAYKFKDKKDSLVNVEYSDKEEIEIFL 860

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++++G  I+   N +    +   GV   S  +D++V     I  ++  D
Sbjct: 861 ITERGMGIKFKANTVNTMGKLAAGVTAISLKEDDKVAYCFLIDGNDSKD 909


>gi|199599526|ref|ZP_03212914.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|258508415|ref|YP_003171166.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
 gi|199589567|gb|EDY97685.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus HN001]
 gi|257148342|emb|CAR87315.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus GG]
 gi|259649729|dbj|BAI41891.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus GG]
          Length = 813

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 296/899 (32%), Positives = 454/899 (50%), Gaps = 97/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV +  + ++ +P  DL  LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVFNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+VA R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y LNKA+ R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQ------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      +++E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQ 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I++EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PASRDRVIEKELKRIAKEYGDDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G +    V+ +     
Sbjct: 517 SLRSYQAVDPEDN-----GLKPNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKV---LAVFAFDQLDLAGTFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R   +AMKL +   +++    T +   D+ + ++    + FP+  +     R + GV+ 
Sbjct: 629 KRKPMMAMKLKTPGAVVTNAYFTTDQAQDVFVVSRHAYGLDFPLDEVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V   +                                         
Sbjct: 688 MDLKPEDEVVNFILVKQPEKAVVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  KR +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKRMALSEVGQMSRARRGLLVLRELKRDPH-RIVAMMQ 755

Query: 847 VNDNDQIILVSDKGTLIR-VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+DN ++ +++D   +I   PVN      R + G  +  T    + V V R RE   V+
Sbjct: 756 VDDNTRLDVLTDADKVITLTPVN-HPTGDRYSNGSFVIDTDVQGKPVFV-RTREETPVE 812


>gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
 gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603]
          Length = 801

 Score =  623 bits (1607), Expect = e-176,   Method: Composition-based stats.
 Identities = 252/734 (34%), Positives = 420/734 (57%), Gaps = 37/734 (5%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGGIIQGLDGIKKAYESGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R++++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSEAIKNFLYKNSDLQISYNFNMVAISDGRPKLMGIKQIIDSYINHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L  A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E + L   IK+   IL    
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  ++ +  T R + I      + ++ E  +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKNELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        S V ++D D +     V+T  + L F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+S+++ E++  +    +        + + AT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVSIDEDEQVIDVFNEKDFNQR--EAFYIMATRNGMIKKSSVPQFKTTRYNKP 631

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IAMK+  +DE++++     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 632 LIAMKVKEQDEVINIMRVESDQLITVVTHKGMSLTYSTNEL-SDTGLRAAGVKSINLKDE 690

Query: 733 DQVISMAIVLHADA 746
           D V+   ++ H+++
Sbjct: 691 DFVVMTQMINHSES 704



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 17/226 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  +L  T+ G   R   ++ R F   N+ GV  + L  GD ++    V
Sbjct: 493 DKEVMVP---SEEVVLSLTRHGYIKR---TSTRSF---NASGVSEVGLKDGDSLLKYLDV 543

Query: 742 LHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              D         R  ++              + ++ + +    E  I     ++   +E
Sbjct: 544 NTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVIDVFNEKDFNQRE 603

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            F +  +  G  K++S   F+ + R  K + A  V +      ++ +  V  +  I +V+
Sbjct: 604 AFYIMATRNGMIKKSSVPQFKTT-RYNKPLIAMKVKE---QDEVINIMRVESDQLITVVT 659

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            KG  +    NE+        GV   +   ++ VV  + I  SE V
Sbjct: 660 HKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFVVMTQMINHSESV 705



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E +  +   + +   E+ +L+++  G+ KRTS+  F  S  S  G++        +  
Sbjct: 484 EAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTSTRSFNASGVSEVGLK--------DGD 535

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR--IASR-ATKGVVIFSTAKDERVVS 893
           +L+    VN  D  ++ ++KG  + +PV    EIR     +  ++   I S  +DE+V+ 
Sbjct: 536 SLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQ---IVSIDEDEQVID 592

Query: 894 V 894
           V
Sbjct: 593 V 593


>gi|111657636|ref|ZP_01408369.1| hypothetical protein SpneT_02001168 [Streptococcus pneumoniae
           TIGR4]
          Length = 817

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/879 (31%), Positives = 450/879 (51%), Gaps = 81/879 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  
Sbjct: 1   MSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + 
Sbjct: 61  GNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK
Sbjct: 181 IDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEK 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A
Sbjct: 241 LKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           + +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   
Sbjct: 301 NTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKE 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                     
Sbjct: 361 KAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL--------------------- 399

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     + 
Sbjct: 400 -----KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMY 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     +
Sbjct: 455 NLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A          +  RD+D +  +    T   +L F+SLG V    +  L     +  G+
Sbjct: 515 AAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGE 569

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            L   +     E    I+     +   +       T+ G ++R +  +F         ++
Sbjct: 570 HLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSV 627

Query: 677 ---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
              KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D
Sbjct: 628 KYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD 686

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            + S  I   +      +   +K +S +  L +   +    +  +   + +         
Sbjct: 687 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAGA-- 744

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                    V+E+GF       DF                             V+ NDQ 
Sbjct: 745 ---------VAEQGF-----VGDF-------------------------FSTEVDVNDQT 765

Query: 854 ILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 LLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 804



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 145/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V++ +   +   + V +I     N + A    ++   +  
Sbjct: 229 RVVVRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 288

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 289 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 348

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 349 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 405

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 406 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 457

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 458 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 511

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 512 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 560

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 561 -----DIRWKD----------------------------------IGEHLSQTITNFETN 581

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 582 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 638

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 639 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 690


>gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 283/633 (44%), Positives = 413/633 (65%), Gaps = 28/633 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
             +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +
Sbjct: 5   QTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSS 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
               KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA 
Sbjct: 65  GPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAY 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMAT
Sbjct: 125 RYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I
Sbjct: 185 NMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKI 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
           ++RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G
Sbjct: 245 LVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +
Sbjct: 305 LRVVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVD 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S +P+TA+  LM+R       
Sbjct: 365 VVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                  +VQ +AI++++L RLT L  +D+R EL  L + I   
Sbjct: 418 -------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
            D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLG
Sbjct: 459 KDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +
Sbjct: 519 YIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEI 578

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPED 639
              S  +RG  + ++LS++  E IT ++   E 
Sbjct: 579 QEASRTSRGSHIKSLLSVSSDEEITAVVSLKEF 611



 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            K ++  +   +   E+    +    V   + E   ++L  KE+ ++ +S  G+ KR  +
Sbjct: 466 EKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPA 525

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             ++  NR GKG  + ++++ + +  +   F  + +D I+ +++ G    + V+EI+ AS
Sbjct: 526 TAYKSQNRGGKGSNSVNLAEDDFLDQI---FTASTHDYIMFITNAGKAYWLKVHEIQEAS 582

Query: 875 RATKGV---VIFSTAKDERVVSVERIRE 899
           R ++G     + S + DE + +V  ++E
Sbjct: 583 RTSRGSHIKSLLSVSSDEEITAVVSLKE 610


>gi|329946868|ref|ZP_08294280.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526679|gb|EGF53692.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 850

 Score =  623 bits (1606), Expect = e-176,   Method: Composition-based stats.
 Identities = 276/894 (30%), Positives = 413/894 (46%), Gaps = 131/894 (14%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MPKSASTQAPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALTLTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEASLEELMAFVPGPDLPAGGMIVGLDGIRE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  GRG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+
Sbjct: 240 AYRVGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIIARIKEAVGSKKLQGITDV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR  G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L
Sbjct: 300 ADLTDRRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + FV  R  VV RRT++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LM
Sbjct: 360 EVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARSRLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           Q                             L+E Q   ILEL+L RLT     ++  E +
Sbjct: 420 Q--------------------------VFDLTEPQASYILELQLRRLTKFSVIELEKERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT-------------------- 518
            L  EI+    IL+    L  ++ +EL +V ++  T RRT                    
Sbjct: 454 ELAREIEALEAILADEVLLRRVVSRELAAVAEQFGTSRRTVLLETSGERVTSSASVAPPE 513

Query: 519 --------------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
                                +            +  +   V +S  G V R P +   A
Sbjct: 514 DDASGATGGSTVKQAKASAEPMTLMPGSSPVPLTVPDDPCRVMLSATGLVARTPGAEPVA 573

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK-- 616
           +  G +    +  +           +    +   +  G +    V               
Sbjct: 574 RTGGRRPHDALTSQ--------VATTARGRIGAVTDTGRLVLLDVVSTSEVPRTEEAPGL 625

Query: 617 ----ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                +  ++     E++  ++P        +N  +V AT  G ++R K  D    N   
Sbjct: 626 AGATQVRQLVDTEPEEKVVGLVPVGS----ADNPPIVLATADGVIKRVKPGD-EPRNAES 680

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + L   D ++   T    + + L T   Q +RF  + +R   GR + G+ GISL +G
Sbjct: 681 WEVISLSDDDRVVFAGTARDTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLREG 739

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            +VI+ A V                                           +  E    
Sbjct: 740 ARVIAGAAVPED----------------------------------------LLAEAVVV 759

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                +  L  +  G  K T    +    R+  G+R+    +      LVA + 
Sbjct: 760 TVAGSESSLPGTGGGSVKVTPLDRYPAKGRATGGVRSHRFLRGE--DELVAAWV 811



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 74/242 (30%), Gaps = 34/242 (14%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-------------RNSV 722
           M L      + +        ++L +  G   R P +      G               + 
Sbjct: 535 MTLMPGSSPVPLTVPDDPCRVML-SATGLVARTPGAEPVARTGGRRPHDALTSQVATTAR 593

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G  G     G +++ + +V  ++    E    +   +  R+L+  + EE           
Sbjct: 594 GRIGAVTDTG-RLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEEKVVGLVPVG-- 650

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+  +  G  KR    D     R+ +      +S       +V
Sbjct: 651 -----------SADNPPIVLATADGVIKRVKPGDEP---RNAESWEVISLSD---DDRVV 693

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                 D D + LV+    L+R    ++R   R   G+   S  +  RV++   + E  +
Sbjct: 694 FAGTARDTDFLALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLREGARVIAGAAVPEDLL 753

Query: 903 VD 904
            +
Sbjct: 754 AE 755



 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 81/276 (29%), Gaps = 35/276 (12%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +               D + S    T    I   T  
Sbjct: 549 PDDPCRVMLSATGLVARTPGAEPVARTGGR------RPHDALTSQVATTARGRIGAVTDT 602

Query: 703 GQCVRFPI---SAIR---VFAGRN-SVGVR-GISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   +   S +       G   +  VR  +     ++V+ +  V  AD         
Sbjct: 603 GRLVLLDVVSTSEVPRTEEAPGLAGATQVRQLVDTEPEEKVVGLVPVGSAD----NPPIV 658

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +       + +    E   +   +     +              F+  V+      R  +
Sbjct: 659 LATADGVIKRVKPGDEPRNAESWEVISLSDDDRVVFAGTARDTDFLALVTSDAQLLRFQA 718

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVS-----------DKGT 861
              R   R   G+    + +      ++A   V ++   + ++V+             G+
Sbjct: 719 AKVRPQGRGAGGMAGISLREG---ARVIAGAAVPEDLLAEAVVVTVAGSESSLPGTGGGS 775

Query: 862 LIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVER 896
           +   P++      RAT GV        ++ +V+   
Sbjct: 776 VKVTPLDRYPAKGRATGGVRSHRFLRGEDELVAAWV 811


>gi|256847178|ref|ZP_05552624.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
 gi|256715842|gb|EEU30817.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN]
          Length = 843

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 258/743 (34%), Positives = 410/743 (55%), Gaps = 44/743 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  I  +++   M   +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K +
Sbjct: 2   SDNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYT
Sbjct: 62  RKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+ VNG  GI+ G AT IP
Sbjct: 122 EARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E++   + ++ +P+  LD LM  + GPDFPTG +I G  GI+ AY TGRG +++R
Sbjct: 182 PHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGGIIQGVDGIRKAYETGRGRVILR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+  G R+QI+VTEIPY VNKA ++++I +L   K++  I++ RDE+DR G R+ 
Sbjct: 242 ANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLRIA 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A A+ ILN L + T LQ  ++ NMVA++  +P R  L   LK+++AF++E++ R
Sbjct: 302 IELKRNADANGILNYLLKNTDLQINYNFNMVAIDNQRPMRVGLKHYLKSYLAFQQEIITR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L+KA+ R H++ GL  A++ LD+V++ IR S N + A + L+             
Sbjct: 362 RTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNE----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             ++ Q  AI+ L+L RLT     D+R+E   L   I E   IL
Sbjct: 411 ---------------YQFTQPQAEAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVK 549
           + ++ L  ++ +E  ++  +  + R+T+I + +    ++ +  +  E++VV VSH GY+K
Sbjct: 456 NDQNELNRVLVKEFKAIDKQFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIK 515

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  ++A            +R++D+   +   ST   +  F++ G V    V  L   
Sbjct: 516 RTSLRSFKASVLEEN-----GLREDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDA 570

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---I 666
             +  G+ +   + L   E I   + F   E       ++F+T  G V++  + D     
Sbjct: 571 KWKETGEHISQSIGLADDEEIIKALIFENLEL---PGTMIFSTSDGQVKQTTIQDLKPGS 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVFAGRNSV 722
           +      + MKL      +      +       +   +K G  +RF ++ +     R + 
Sbjct: 628 RYKSRASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHGYGLRFDVAEVPTQGTRTA- 686

Query: 723 GVRGISLAKGDQVISMAIVLHAD 745
           GVR I+L   D+++++      D
Sbjct: 687 GVRAINLKDDDELVNLVQTADDD 709



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 93/268 (34%), Gaps = 14/268 (5%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E+    +      +  +   VV  +  G ++R  L  F            L   D  L +
Sbjct: 485 EKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEEN---GLREDDYPLLI 541

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHAD 745
           +  +  N + + T  G  +  P+  +     + +     + I LA  +++I   I  + +
Sbjct: 542 QRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEIIKALIFENLE 601

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                          +      +  S      + +         +      E + +   +
Sbjct: 602 LPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQNVSL 661

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
             +S+ G+G R    +         G+RA ++        LV +    D+D++ +++ +G
Sbjct: 662 TAISKHGYGLRFDVAEVPTQGTRTAGVRAINLKD---DDELVNLVQTADDDRLAIMTQRG 718

Query: 861 TLIRVPVNEIRIASRATKGVVIF-STAK 887
               +  NE+ + SRA +GV++     K
Sbjct: 719 AFKEMRANELEVGSRARRGVLVLHKLKK 746



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 15/183 (8%)

Query: 729 LAKGDQ---VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L + D    +   + + H     ++     + +         +T E  S     + +  I
Sbjct: 532 LREDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEI 591

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDF----RISNRSGKGIRATDVSKINEIGAL 841
            +    E       ++  +  G  K+T+  D     R  +R+        +   +    +
Sbjct: 592 IKALIFENLELPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRAS---VVMKL--KDASARM 646

Query: 842 VAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +         Q   +  +S  G  +R  V E+      T GV   +   D+ +V++ +  
Sbjct: 647 INAEYYEPQAQNVSLTAISKHGYGLRFDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTA 706

Query: 899 ESE 901
           + +
Sbjct: 707 DDD 709



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/201 (9%), Positives = 62/201 (30%), Gaps = 9/201 (4%)

Query: 647 YVVFATKHGNV-----RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G+V          + + +       ++ L   +EI+             ++ 
Sbjct: 549 HLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEIIKALIFENLELPGTMIF 608

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKH 757
           +T  GQ  +  I  ++  +   S     + L     ++I+         +          
Sbjct: 609 STSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQNVSLTAISKHG 668

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
              +  +    T+   +    +    +  E         +  +  ++++G  K   + + 
Sbjct: 669 YGLRFDVAEVPTQGTRTAGVRAINLKDDDELVNLVQTADDDRLAIMTQRGAFKEMRANEL 728

Query: 818 RISNRSGKGIRATDVSKINEI 838
            + +R+ +G+      K +  
Sbjct: 729 EVGSRARRGVLVLHKLKKHPH 749


>gi|73916854|gb|AAZ93295.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 281/883 (31%), Positives = 450/883 (50%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG  +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGAFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D + S  I   +      +   +K +S +  L +   +    +  +   + +     
Sbjct: 687 KEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLA 746

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                        V+E+GF       DF                             V+ 
Sbjct: 747 GA-----------VAEQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KG +    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGIIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|251782579|ref|YP_002996882.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391209|dbj|BAH81668.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 819

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 277/890 (31%), Positives = 442/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKARLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    +  T++G  +R +  +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   T     D+LL T  G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDAKDRVVTLTPIVMEDLLLVTYHGYALRFSSQDV-PIQGLKSSGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+++S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNEDKLVSAFSVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
 gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 821

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/883 (31%), Positives = 449/883 (50%), Gaps = 81/883 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K 
Sbjct: 1   NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W    +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 61  AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  +
Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 240

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IEL
Sbjct: 241 EIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIEL 300

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R++
Sbjct: 301 KKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSR 360

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           +   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                 
Sbjct: 361 FDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADAKENL----------------- 403

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                      +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+   
Sbjct: 404 ---------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDE 454

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR  
Sbjct: 455 RTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTS 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + A          +  RD+D +  +    T   +L F+SLG V    +  L     +
Sbjct: 515 PRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWK 569

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   +     E    I+     +   +       T+ G ++R +  +F       
Sbjct: 570 DIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR 627

Query: 673 KIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L
Sbjct: 628 SKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNL 686

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + D      ++             +    + +R+   +    +  K    V   +  + 
Sbjct: 687 KEDD------VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKP 740

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +           V+++GF       DF                             V+ 
Sbjct: 741 HRVFLAG-----AVADQGF-----VGDF-------------------------FSTEVDV 765

Query: 850 NDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 NDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 808



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 233 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 292

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 293 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 352

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   + L     +       I          D      +    
Sbjct: 353 EVILARSRFDKEKAEKRLHIVKGLISVISILDE---VIALIRASENKADAKENLKVSYDF 409

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 410 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 461

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 462 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 515

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 516 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 564

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 565 -----DIRWKD----------------------------------IGEHLSQTITNFETN 585

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 586 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 642

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 643 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 694


>gi|323127402|gb|ADX24699.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 819

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 278/890 (31%), Positives = 442/890 (49%), Gaps = 81/890 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    +  T++G  +R +  +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   T     D+LL T  G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDAKDRVVTLTPIVMEDLLLVTYHGYALRFSSQDV-PIQGLKSSGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+++S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNEDKLVSTFSVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 817


>gi|229552217|ref|ZP_04440942.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|258539628|ref|YP_003174127.1| DNA topoisomerase IV subunit A [Lactobacillus rhamnosus Lc 705]
 gi|229314403|gb|EEN80376.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus
           LMS2-1]
 gi|257151304|emb|CAR90276.1| DNA topoisomerase IV, A subunit [Lactobacillus rhamnosus Lc 705]
          Length = 813

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 297/899 (33%), Positives = 456/899 (50%), Gaps = 97/899 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++K + K
Sbjct: 3   NQIQELTLEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNQDGNTYDKGFRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG YHPHG+++IY+A+ R++QDW LR  LI+  GN GS+DGDPPAA RYTE 
Sbjct: 63  SAKSVGNVMGNYHPHGDSSIYEAMVRLSQDWKLRAPLIQMHGNNGSMDGDPPAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L D+ K+TVD   N+D + QEP VL A +PN+LVNG  GI+ G AT IP H
Sbjct: 123 RLSKISKEMLADIDKETVDMVLNFDDTAQEPTVLPAGFPNLLVNGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EVV+  + ++ +P  DL  LM+ ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLREVVNAILYLLKHPQADLADLMQYVKGPDFPTGGIIQGLDGIKQAYETGRGKIVVRSR 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +HIE   G RE+IVVTEIPY VNKA M++KI EL   K++  IA++RDESDR G  VVIE
Sbjct: 243 THIETIRGGREKIVVTEIPYDVNKAQMIKKIDELRLNKKVDGIAEVRDESDRFGLSVVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  ILN L++ T LQ  ++ NMVA+   +P+   L  +L+A+VA R +VV RRT
Sbjct: 303 LKKEADAHGILNYLFKNTDLQITYNFNMVAIADMQPKLLGLKAMLEAYVAHRRDVVTRRT 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +Y LNKA+ R H++ GL   ++ LD+V+  IR S +   A+R L+++             
Sbjct: 363 RYELNKAQARQHIVEGLIKMLSILDQVIAAIRASSDKGDAKRNLVKQ------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           SE Q  AI+ L+L RLT      +++E   L   I E  DIL+ 
Sbjct: 410 -------------FDFSEAQAEAIVSLQLYRLTNTDITALQDEAAQLAKAIAEYQDILAQ 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRV 551
            +    +I++EL  +  E    RR+ I   +  +E      +  E ++V VS  GYVKR 
Sbjct: 457 PASRDRVIEKELKRIAKEYGDDRRSSIQAEIETLEVATTVTVADETVMVQVSRDGYVKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            ++  D       +ST   +   ++ G +    V+ +     
Sbjct: 517 SLRSYQAVDPEDN-----GLKPNDLAIFTGELSTLQHLYIVTNAGNIIYRPVYEISDARW 571

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-- 669
           +  G+ L   + L   E++   +     +        V  +  G +++  LSD       
Sbjct: 572 KDTGEHLSQTVGLGTDEKV---LAVFAFDQLDLAGTFVLGSSDGYIKQTALSDLQPQRTY 628

Query: 670 -RSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            R   +AMKL +   +++    T +   D+ + ++    + FP++ +     R + GV+ 
Sbjct: 629 KRKPMMAMKLKTPGAVVTNAYFTTDQAQDVFVVSRHAYGLDFPLAEVSTVGAR-ATGVKS 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V++  +V   +                                         
Sbjct: 688 MDLKPEDEVVNFILVKQPEKAVVG------------------------------------ 711

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           ++++G  KR +  +    +R+ +G+      K +    +VA+  
Sbjct: 712 ---------------ILTQRGAFKRMALSEVGQMSRARRGLLVLRELKRDPH-RIVAMMQ 755

Query: 847 VNDNDQIILVSDKGTLIR-VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           V+DN ++ +++D   +I   PVN      R + G  +  T    + V V R RE   V+
Sbjct: 756 VDDNTRLDVLTDADKVITLTPVN-HPTGDRYSNGSFVIDTDVQGKPVFV-RTREETPVE 812


>gi|222153160|ref|YP_002562337.1| DNA topoisomerase IV subunit A [Streptococcus uberis 0140J]
 gi|222113973|emb|CAR42255.1| topoisomerase IV subunit A [Streptococcus uberis 0140J]
          Length = 819

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 262/836 (31%), Positives = 423/836 (50%), Gaps = 59/836 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + FLL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGFLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P+  L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDATVYMIDHPNAKLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A  + +LN L +YT LQ  ++ NMVA++ + P +  +  IL +++A R+ +++ R+
Sbjct: 302 LKKDADTETVLNYLLKYTDLQVNYNFNMVAIDHFTPHQVGIQKILSSYIAHRKSIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEVIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E + L   IK    I+  
Sbjct: 406 ----------KVSYAFTEEQAEAIVTLQLYRLTNTDILTLQKEEDELNDLIKTLTAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +    RR+ + +    ++++    IV E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELRDVKKKFGNERRSELQKEAQTIEIDTASLIVEEETFVSVTKSGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+  G V    +  L     
Sbjct: 516 SPRSFNASSLE-----EIGKRDDDHLIFVENAKTTQHLLLFTDQGNVIYRPIHELQDIKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++    + +       +    +        T+ G ++R    D       
Sbjct: 571 KEIGEHLSQHITNFATDELILHAEIVDY---FEKGSYFSVTQLGQIKRFDRKDLTPWRTY 627

Query: 672 GKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              + K     + +D I+SV     E+ ILL +  G  +RF    +    G  S GV+ +
Sbjct: 628 RTKSTKYAKLKNEQDRIVSVAPIFFED-ILLISHQGYALRFSAEEV-PVQGLKSAGVKAM 685

Query: 728 SLAKGDQVI-----------------SMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +L  GD +                  S+  V  +D     R      +  + +       
Sbjct: 686 NLKAGDHIAAAFLASTDSFFVLTQRGSLKRVATSDIPQTSRANRGLLVLRELKNKPHRVF 745

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
              ++  D+            E   + Q +L +S+ G         + ++ R+  G
Sbjct: 746 FAGAVHGDAPSSTIDLFNDPVEESNQAQELLVISKTGQEYVIDLRSYSLAERTSNG 801



 Score = 84.8 bits (208), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/455 (13%), Positives = 136/455 (29%), Gaps = 30/455 (6%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           I+L  D+      +  +  +++Q      ++ +       +G   I +   +    I   
Sbjct: 300 IELKKDADTETVLNYLLKYTDLQVNYNFNMVAIDHFTPHQVGIQKILSSYIAHRKSIIIE 359

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
                       +   E L     +       I          D      +    +    
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDE---VIALIRASDNKADAKENLKVSYAFTEEQA 416

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
              V L +YR            + ++ED + DL                 +Y      L 
Sbjct: 417 EAIVTLQLYRLTNTD----ILTLQKEEDELNDLIKT----LTAIIGDEATMYNVMKRELR 468

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +   +        ++ ++    +              V  TK G ++R     F  
Sbjct: 469 DVKKKFGNERR------SELQKEAQTIEIDTASLIVEEETFVSVTKSGYIKRTSPRSFNA 522

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            +      +     D ++ VE       +LL T  G  +  PI  ++    +        
Sbjct: 523 SSLEE---IGKRDDDHLIFVENAKTTQHLLLFTDQGNVIYRPIHELQDIKWKEIGEHLSQ 579

Query: 728 ---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
              + A  + ++   IV + +      +  +  +    R          +     +   N
Sbjct: 580 HITNFATDELILHAEIVDYFEKGSYFSVTQLGQIKRFDRKDLTPWRTYRTKSTKYAKLKN 639

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +       +  + IL +S +G+  R S+ +  +      G++A ++        + A 
Sbjct: 640 EQDRIVSVAPIFFEDILLISHQGYALRFSAEEVPVQGLKSAGVKAMNLKAG---DHIAAA 696

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           F  +  D   +++ +G+L RV  ++I   SRA +G
Sbjct: 697 FLAS-TDSFFVLTQRGSLKRVATSDIPQTSRANRG 730


>gi|329116178|ref|ZP_08244895.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906583|gb|EGE53497.1| DNA topoisomerase IV, A subunit [Streptococcus parauberis NCFD
           2020]
          Length = 819

 Score =  622 bits (1605), Expect = e-176,   Method: Composition-based stats.
 Identities = 275/887 (31%), Positives = 429/887 (48%), Gaps = 78/887 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNVQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R  L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNRETLVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + + +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEISGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   LD LME + GPDFPTG +I G   IK AY TG+G +++R  
Sbjct: 182 NLAEVIDAVVYMIDHPKASLDKLMEFLPGPDFPTGGIIQGAEEIKKAYETGKGRVIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E   G ++QIVVTEIPY++NK+ +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEFETLKGGKQQIVVTEIPYEINKSVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A  +LN L +YT LQ  ++ NMVA++ Y P +  LI IL +++A R+ ++V+R+
Sbjct: 302 LKKDADAQNVLNYLLKYTDLQVNYNFNMVAIDNYTPRQVGLIKILSSYIAHRKNIIVKRS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 QFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASDNKSDAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE   L   I     I+ +
Sbjct: 406 ----------KLSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEEKELRDLITMLAAIIGN 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +    RR+ +       ++     IV E+  V+V+  GY+KR 
Sbjct: 456 EATMFNVMKRELREVKKKFANARRSELQVEAETIEINTASLIVEEETFVSVTRSGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNAS-----SIDEIGKRDDDQLVFVEAAKTTQHLLIFTNLGNVIYRPIHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS---DFIQI 668
           +  G+ L   ++    +     +   +    +        T+ G ++R +      +   
Sbjct: 571 KDTGEHLSQTITNYGTDEEVLHVEIVD---QFTKGTYYSVTQLGQIKRFERKDLAPWRTY 627

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   K+ +  + +   +     DI L +  G  +RF    +    G  S GV+ ++
Sbjct: 628 RSKSTKYAKIKNDQDRIISISPIFFEDITLVSHNGYALRFSSQEV-PVQGLKSAGVKAMN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D + S  IV         +   +K               +       +   N    
Sbjct: 687 LKNDDYIASAFIVQSDSFFVLTQRGSLK--------------RVAITDIPQTSRANRGLL 732

Query: 789 RCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
             +ELK K   +    S KG  K +    F               +   E     +V  V
Sbjct: 733 VLRELKSKPHCVFLADSVKGSLKSSKIDLF---------------TSPEEETEAASVLEV 777

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                    S  G +  V +N + ++ R + G  I     D+ V S 
Sbjct: 778 T--------SKTGQVYEVQLNNLNLSDRTSNGSFISDAISDQEVFSA 816



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 79/266 (29%), Gaps = 38/266 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T    ++R        F    RS           EI +     +E   +  T+ G   R 
Sbjct: 458 TMFNVMKRELREVKKKFANARRSELQVEA--ETIEINTASLIVEEETFVSVTRSGYLKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICYMKHMSA 760
               F  S+I     R             DQ++   +     H     +      + +  
Sbjct: 516 SPRSFNASSIDEIGKR-----------DDDQLVFVEAAKTTQHLLIFTNLGNVIYRPIHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD---- 816
              +   DT E  S    +              +  +    +V++ G  KR    D    
Sbjct: 565 LTDIRWKDTGEHLSQTITNYGTDEEVLHVEIVDQFTKGTYYSVTQLGQIKRFERKDLAPW 624

Query: 817 --FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +R  +              N+   ++++ P+   D I LVS  G  +R    E+ +  
Sbjct: 625 RTYRSKS-------TKYAKIKNDQDRIISISPIFFED-ITLVSHNGYALRFSSQEVPVQG 676

Query: 875 RATKGVVIFSTAKDERVVSVERIRES 900
             + GV   +   D+ + S   ++  
Sbjct: 677 LKSAGVKAMNLKNDDYIASAFIVQSD 702


>gi|326803542|ref|YP_004321360.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651545|gb|AEA01728.1| DNA topoisomerase IV, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 818

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 292/882 (33%), Positives = 460/882 (52%), Gaps = 99/882 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  +S+ + M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +  + K 
Sbjct: 4   DIQELSLDEVMGDRFGRYSKYIIQDRALPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G V+G YHPHG++++Y+A+ RM+Q W  R+ LI+  GN GS+DGDP AA RYTE R
Sbjct: 64  AKTVGNVIGNYHPHGDSSVYEAMVRMSQAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL DL KDTVD   N+D + +EPVVL A +PN+LVNG  GI+ G AT IPTHN
Sbjct: 124 LSKLADELLKDLNKDTVDTILNFDDTEEEPVVLPAGFPNLLVNGSQGISAGYATEIPTHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGEV+D     ID+P   ++ LM+ + GPDFPTG +I G+  +  AY TGRG +V+R  +
Sbjct: 184 LGEVIDAVNYYIDHPKAKVETLMKYLPGPDFPTGGIIQGKDQLIKAYKTGRGKVVVRAQT 243

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E     R+QIV+TE+P++VNKA ++ K+ EL   + I  + ++RDESDR G R+++EL
Sbjct: 244 EVESLKAGRKQIVITELPFEVNKADLVRKMDELRLNRSIDGVMEVRDESDRSGLRIIVEL 303

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+ A AD IL   +++T+LQ  ++ NMVA+N  +PE+  LI I++A++  R++VV RRT+
Sbjct: 304 KKDADADQILQYYFKHTNLQINYNFNMVAINKQRPEQVGLIAIIQAYIDHRKDVVSRRTQ 363

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y LNKA+ R H++ GL  A++ LD+V+ IIR S + + A+  L+                
Sbjct: 364 YDLNKAQSRRHIVDGLIKAISILDQVITIIRNSSDKKDAKNNLISE-------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                          S+ Q  AI+ L+L RLT      ++ E  SL   I +   ILS  
Sbjct: 410 ------------YQFSQAQAEAIVTLQLYRLTNTDITALQEEKLSLNEAINQYQAILSDE 457

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVP 552
           + L+ +I+ EL ++K    T R T+I   +    ++ E  I  E++V  V+  GY+KR  
Sbjct: 458 TILMKLIQSELKAIKKAYATDRLTKIEAEVEEIKIKKEFLIPDEEVVTVVTRGGYIKRSS 517

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
           L  Y++          + +RD D V  L   ST  +++  ++ G    + V+ +     +
Sbjct: 518 LRSYQSSNFAD-----LGLRDGDHVLYLAAHSTLDNLVLITNKGNYIFQPVYEMQELRWK 572

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L   + +   E+I  + P+ +D        +V AT+ G ++++KLS+  +I    
Sbjct: 573 DLGEHLSQRIPIASDEKIIQVYPYAKDSQDT----IVLATREGMIKQSKLSELKKIRGHK 628

Query: 673 KIA---MKLDSR-DEILSVETCTQEND-----ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
             A   M L S  DE+++      ++D     ++L T LG  +R+ IS I     R + G
Sbjct: 629 NKASQIMPLSSPLDEVVNCYLVNNQSDKQNGEVILFTALGFSLRYQISEINTVGLR-AKG 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V  I+L   DQV++       D                                      
Sbjct: 688 VISINLKDQDQVVNFVYQDQVD-------------------------------------- 709

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                       ++Q IL  +++G+ KR    D +   R+ +G+      K ++   LV 
Sbjct: 710 ------------EDQQILLATQRGYMKRMRWRDIQTMTRAKRGLMVLREVK-SKPHRLVQ 756

Query: 844 VFPVNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              V    ++  L +  G L ++   ++ +  R + G  I  
Sbjct: 757 ALEVESTQEVYELYTSNGELSQIKAVDVPLHERYSNGSQIID 798



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 19/227 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI--SMAIVLHADA 746
               E  + + T+ G   R   S++R +   N      + L  GD V+  +    L    
Sbjct: 497 LIPDEEVVTVVTRGGYIKR---SSLRSYQSSN---FADLGLRDGDHVLYLAAHSTLDNLV 550

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
               +  Y+     + + +          +           +     K  +  I+  + +
Sbjct: 551 LITNKGNYIFQPVYEMQELRWKDLGEHLSQRIPIASDEKIIQVYPYAKDSQDTIVLATRE 610

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSK-INEIGALVAVFPVND-----NDQIILVSDKG 860
           G  K++   + +   R  K  +A+ +    + +  +V  + VN+     N ++IL +  G
Sbjct: 611 GMIKQSKLSELKKI-RGHK-NKASQIMPLSSPLDEVVNCYLVNNQSDKQNGEVILFTALG 668

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
             +R  ++EI       KGV+  +    ++VV+       + VDE +
Sbjct: 669 FSLRYQISEINTVGLRAKGVISINLKDQDQVVNFVY---QDQVDEDQ 712


>gi|156888557|gb|ABU96683.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 276/885 (31%), Positives = 439/885 (49%), Gaps = 80/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    +  T++G  +R +  +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   T     D+LL T  G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDAKDRVVTLTPIVMEDLLLVTYHGYALRFSSQDV-PIQGLKSSGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+++S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNEDKLVSTFSVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEV 813



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 38/259 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S   A       EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNVMKRELREVKKKFANPRLSELQAESQI--IEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHADADYDERICYMKHMSA 760
               F  S++     R             D++I         H            + +  
Sbjct: 516 SPRSFNASSLEEVGKR-----------DDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TSS 814
              L   D  E  S    +                 +   L V++ GF KR      T  
Sbjct: 565 LTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPW 624

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             ++  +   K ++       +    +V + P+   D ++LV+  G  +R    ++ I  
Sbjct: 625 RTYKSKS--TKYVKL-----KDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDVPIQG 676

Query: 875 RATKGVVIFSTAKDERVVS 893
             + GV   +   ++++VS
Sbjct: 677 LKSSGVKGINLKNEDKLVS 695


>gi|256832646|ref|YP_003161373.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
 gi|256686177|gb|ACV09070.1| DNA topoisomerase (ATP-hydrolyzing) [Jonesia denitrificans DSM
           20603]
          Length = 828

 Score =  622 bits (1604), Expect = e-176,   Method: Composition-based stats.
 Identities = 280/871 (32%), Positives = 407/871 (46%), Gaps = 102/871 (11%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   ++     + I  V +T EM+ S+L YA +VI  RA+PD RDG+KPV RRIL+ M  
Sbjct: 4   KPATTTPAPIAERIIDVDVTAEMETSFLEYAYSVIYSRALPDARDGMKPVQRRILYMMAD 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  ++ +VKC+R+ GEVMGK HPHG++AIYDAL R+AQ +SLR+ L++G GNFGS+D 
Sbjct: 64  MGLRPDRGHVKCSRVVGEVMGKLHPHGDSAIYDALVRLAQSFSLRVPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL  +A  +  DL +D VDF PNYD    +P VL A  P +LVNG  GI
Sbjct: 123 DGPAAARYTEARLAASALAMTADLDEDVVDFIPNYDNRLTQPDVLPAAIPALLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL EV+     ++ +PD  LD LM  + GPD PTG  I+G  GI+ AY 
Sbjct: 183 AVGMATNLAPHNLVEVISAARHLLAHPDATLDDLMRHVPGPDLPTGGRIVGLDGIREAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS   R  + I   +  R  IV+TE+PY V    ++EKI E V  K++  I+++ D 
Sbjct: 243 TGRGSFRTRATAQITNVTSRRRGIVITELPYLVGPEKVIEKIKEGVTNKKLAGISNVTDL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G ++VIE+K G   D +L  LYRYT L+  F +N VAL   +P    L  +++ +
Sbjct: 303 TDREHGLKLVIEVKTGFDPDAVLEALYRYTPLEESFGINNVALVDGQPRTLGLRDMIQVW 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  R  V+ RR++Y L +  +R H++ GL  A+ ++DEV+ +IR S +  TAR  LM   
Sbjct: 363 VNHRISVIRRRSEYRLKRRTERQHLVEGLLRAILDIDEVIDVIRTSDDSATARTRLM--- 419

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQ   ILELRL RLT   R ++  E + L 
Sbjct: 420 -----------------------DVFDLSEVQADYILELRLRRLTKFSRLELEKERDDLA 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------- 534
            +I E  +IL     L  ++ QE+  V     TPRRT +V     +              
Sbjct: 457 AQIAELTEILGDERVLHRLVSQEMADVARAHGTPRRTVLVTSDGSVSTSSAQPAPRRGAP 516

Query: 535 ---------REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                         V +S  G + R                +       D +T +   S 
Sbjct: 517 VDPASLQIADAPCTVVLSSTGLLARTTDDS--------PLVADDQRSAHDALTSVTSTSV 568

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
             ++   +S G V K +V  LP      R  ++   + +     +          S    
Sbjct: 569 RGTIGALTSRGRVIKIQVVELPAIPSVDRSVSVAAGIPVTDLVELEGTERVIALVSFAEQ 628

Query: 646 -LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              +   T  G V+R  +++          A+ L   DEI+    CT + D++  +   +
Sbjct: 629 APPLAMGTAAGVVKRVAMNEP--PRADVFDAITLKEGDEIVGAAHCTDDADLVFLSSDAR 686

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF  S++R   GR + G+ G+ LA G + +S +++          I   +        
Sbjct: 687 LLRFTASSVRP-QGRAAGGMSGMKLAPGTRALSFSVISPDTEAAVVTIAGARDALDN--- 742

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                                  S  G  K +    F    R+ 
Sbjct: 743 ---------------------------------------SVGGSIKVSPFDLFPRKGRAT 763

Query: 825 KGIRATDVSKINE---IGALVAVFPVNDNDQ 852
            G+RA    K  +    GA VA  P   +D 
Sbjct: 764 GGVRAHRFLKGEDVLIHGA-VAPRPAKASDD 793



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +  G  KR +  +     R+     A  + +      +V      D+  ++ +S    L+
Sbjct: 636 TAAGVVKRVAMNEPP---RADV-FDAITLKEG---DEIVGAAHCTDDADLVFLSSDARLL 688

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           R   + +R   RA  G+     A   R +S   I   
Sbjct: 689 RFTASSVRPQGRAAGGMSGMKLAPGTRALSFSVISPD 725


>gi|225570592|ref|ZP_03779617.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
 gi|225160605|gb|EEG73224.1| hypothetical protein CLOHYLEM_06694 [Clostridium hylemonae DSM
           15053]
          Length = 746

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 257/728 (35%), Positives = 399/728 (54%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   QDSQIIRTEYSDLMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKLTQDAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEVVD   A + N +I    LM  ++GPDFPTG +++ +  + + Y +G G I I
Sbjct: 182 PPHNLGEVVDAVKAYMKNDEISTKQLMRYMKGPDFPTGGIVVNKDDLPDIYESGAGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG    E   G ++++VVTEIPY +  A + + + +   LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVETEDMKGGKKRLVVTEIPYTMIGAGIGKFLNDVCALVESKKTNDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELK+GA A+ + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIELKKGADAENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKQIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K  D+  +  GL  A   +D ++ I+R S + + A+  L +        
Sbjct: 362 LATRKYKNLLAKELDKKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTKGVTENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I               +  +E Q  AILE+RL +L GL  + ++ E       I   
Sbjct: 422 KTSISK--------KMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHEETLEHIASY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L  +K E    RRT +      + +E+ I  +++V  +   GY
Sbjct: 474 EDILNNYDSMSEVIMEDLDRIKKEYGRSRRTAVENAEAAVFEENKIEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  +VY   +             +     +        +  F++ G +++ KV  LP
Sbjct: 534 AKTVDTAVYERNKEAA----------DAENRYVLSCMNTGKICLFTNTGKMHQIKVLDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G+ + N+ + +  +     +    D        ++F TK G V++   S+F  
Sbjct: 584 YGKFRDKGQPIDNVSNYDSTQETIVYLC---DAQQMQIARLLFVTKTGMVKKVDGSEFQV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE++SV+      +I+L T  G  +RFP   +     + ++GVRGI
Sbjct: 641 AK-RTIAATKLQEEDELISVQVINDSQNIVLQTADGYFLRFPAGEVSEKK-KGAIGVRGI 698

Query: 728 SLAKGDQV 735
            L K D+V
Sbjct: 699 RLHKNDEV 706



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+   V+S           +    +   +         D  +     ++           
Sbjct: 551 AENRYVLSCMNTGKICLFTNTGKMHQIKVLDLPYGKFRDKGQPIDNVSNYDSTQETIVYL 610

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L V++ G  K+    +F+++ R          +K+ E   L++V  +ND
Sbjct: 611 CDAQQMQIARLLFVTKTGMVKKVDGSEFQVAKR------TIAATKLQEEDELISVQVIND 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +  I+L +  G  +R P  E+    +   GV      K++ V
Sbjct: 665 SQNIVLQTADGYFLRFPAGEVSEKKKGAIGVRGIRLHKNDEV 706


>gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The
           Antibiotic Simocyclinone D8
          Length = 522

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 268/515 (52%), Positives = 360/515 (69%), Gaps = 9/515 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 6   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 65

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 66  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 126 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 186 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 245

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 246 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 306 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  +++ 
Sbjct: 366 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLER 425

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 426 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 485

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           E L IL S  RL+ +I++EL  V+++    RRT I
Sbjct: 486 ELLRILGSADRLMEVIREELELVREQFGDKRRTEI 520


>gi|56807930|ref|ZP_00365752.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 759

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 262/764 (34%), Positives = 407/764 (53%), Gaps = 40/764 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    V  T++G ++R    +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   +     D+LL TK G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           L   D + S   V         +   +K M+      +      
Sbjct: 687 LKNDDSLASAFAVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRG 730



 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 67/455 (14%), Positives = 140/455 (30%), Gaps = 30/455 (6%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           I+L  D+      +  +  +++Q      ++ +       +G   I +   S   +I   
Sbjct: 300 IELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIE 359

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
                       +   E L     +       I          D      +    S    
Sbjct: 360 RSKFDKAKAEKRLHIVEGLIRVLSILDE---IIALIRSSDNKADAKENLKVSYDFSEEQA 416

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
              V L +YR            +  +E+ + DL                 +Y      L 
Sbjct: 417 EAIVTLQLYRLTNTD----IVTLQNEENDLRDLITT----LSAIIGDEATMYNVMKRELR 468

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +           L++ +  + I+              V  T+ G ++R     F  
Sbjct: 469 EVKKKFANP------RLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNA 522

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV--R 725
            +      +     DE++ V+       +LL T LG  +  PI  +     ++      +
Sbjct: 523 SSLEE---VGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQ 579

Query: 726 GI-SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            I + A  ++++   IV   D      +     +    R          S         +
Sbjct: 580 TISNFATEEEILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKD 639

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +       +  + +L V++ G+  R SS +  I      G++  ++       +L + 
Sbjct: 640 DKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLK---NDDSLASA 696

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           F V  N    +++ +G+L R+ V++I   SRA +G
Sbjct: 697 FAVTSN-SFFVLTQRGSLKRMAVDDIPQTSRANRG 730


>gi|148993667|ref|ZP_01823114.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|147927747|gb|EDK78770.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP9-BS68]
 gi|332073184|gb|EGI83663.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17570]
          Length = 811

 Score =  622 bits (1603), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/873 (31%), Positives = 446/873 (51%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +      AT+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|168485803|ref|ZP_02710311.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|221231636|ref|YP_002510788.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|183570981|gb|EDT91509.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|220674096|emb|CAR68614.1| topoisomerase IV subunit A [Streptococcus pneumoniae ATCC 700669]
 gi|301793991|emb|CBW36389.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV104]
          Length = 811

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 277/873 (31%), Positives = 445/873 (50%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +       T+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|153814923|ref|ZP_01967591.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|317500435|ref|ZP_07958659.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089558|ref|ZP_08338457.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847954|gb|EDK24872.1| hypothetical protein RUMTOR_01138 [Ruminococcus torques ATCC 27756]
 gi|316898190|gb|EFV20237.1| DNA gyrase subunit A [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404926|gb|EGG84464.1| hypothetical protein HMPREF1025_02040 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 747

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 258/729 (35%), Positives = 400/729 (54%), Gaps = 27/729 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 2   NSESQIIRTEYSDLMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RY
Sbjct: 62  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRY 121

Query: 131 TECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL K    + L DL KD VDF PN+D + +EP+VL  R PN+LVNG  GIAVGMAT+
Sbjct: 122 TEARLTKFTQEVCLADLDKDVVDFGPNFDETEKEPLVLPMRVPNLLVNGAEGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D   A I N  I    LM+ I+GPDFPTG +++ +  + N Y TG+G I 
Sbjct: 182 IPPHNLGEVIDAVKAYIKNDSITTKQLMKYIKGPDFPTGGIVVNKDDLINIYETGQGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQ 306
           +RG    E+  G ++Q+V++EIPY +  A + + + +   LV  K+  DI D+ ++S ++
Sbjct: 242 VRGKVETEELKGGKKQLVISEIPYTMIGAGIGKFLNDVAGLVETKKTTDITDISNQSSKE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V FR 
Sbjct: 302 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGRPETLGLKKIIEHHVDFRF 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+ K LL K ++++ V  GL  A   +D ++ I+R S + + A+  L+    +   
Sbjct: 362 ELATRKYKTLLAKEQEKSEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLVNGVTDNIK 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  I               +  +E Q  AILE+RL RL GL    +  E       I  
Sbjct: 422 FKSSISK--------KMAVLLRFTERQAAAILEMRLYRLIGLEVQALIAEHEQTVKNIAR 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++   +  +I +EL S K+E    RRT I      + +E  I  +++V  +   G
Sbjct: 474 YEDILNNYDSMAQVIVEELESFKEEYAKARRTVIENAEEAVFEEKKIEEQEVVFLMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y + V ++VY   +             +     +        +  F++ G +++ KV  L
Sbjct: 534 YARIVDVAVYERNKEAA----------DSENKYIVHCMNTGKICIFTNSGKMHQVKVIDL 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N   ++        +    D        ++F+T  G V++   S+F 
Sbjct: 584 PYGKFRDKGVPIDN---VSNYSSSDEQIVSVYDSEQMRFAMLLFSTAQGMVKKVSGSEFQ 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                  +A KL   D ++ V    +   ++L TK G  +RFP + +     + +VGVRG
Sbjct: 641 VAK-RTILATKLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPATEV-PIKKKAAVGVRG 698

Query: 727 ISLAKGDQV 735
           I L K D++
Sbjct: 699 IRLQKKDEL 707



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 10/152 (6%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF----ILTVSEKG 807
               K    +   +         +  D+    + S+E+   +   EQ     +L  + +G
Sbjct: 570 TNSGKMHQVKVIDLPYGKFRDKGVPIDNVSNYSSSDEQIVSVYDSEQMRFAMLLFSTAQG 629

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             K+ S  +F+++ R          +K+ E  +LV V  VN+N  ++L +  G  +R P 
Sbjct: 630 MVKKVSGSEFQVAKR------TILATKLQEEDSLVDVRVVNENKHVVLQTKNGYFLRFPA 683

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            E+ I  +A  GV      K + +  V    E
Sbjct: 684 TEVPIKKKAAVGVRGIRLQKKDELEKVYLFEE 715



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 73/211 (34%), Gaps = 17/211 (8%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  R   ++ + +   +           E   +  C    
Sbjct: 513 AVFEEKKIEEQEVVFLMDRFGYARIVDVAVYERNKEAA--------DSENKYIVHCMNTG 564

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----KGDQVISMAIVLHADADYDE 750
            I + T  G+  +  +  +     R+  GV   +++      +Q++S   V  ++     
Sbjct: 565 KICIFTNSGKMHQVKVIDLPYGKFRD-KGVPIDNVSNYSSSDEQIVS---VYDSEQMRFA 620

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            + +       +++   + +        + ++   S    + +   +  +L  ++ G+  
Sbjct: 621 MLLFSTAQGMVKKVSGSEFQVAKRTILATKLQEEDSLVDVRVVNENKHVVLQ-TKNGYFL 679

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           R  + +  I  ++  G+R   + K +E+  +
Sbjct: 680 RFPATEVPIKKKAAVGVRGIRLQKKDELEKV 710


>gi|21518734|gb|AAM60779.1| topoisomerase IV subunit A [Corynebacterium urealyticum DSM 7109]
          Length = 800

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 275/887 (31%), Positives = 450/887 (50%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A
Sbjct: 5   IQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++R    
Sbjct: 185 AEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  AV+ LD V  +IR S N   A+  L++                
Sbjct: 365 ELDNAEKRMHIVEGLIKAVSILDRVFELIRSSKNKRDAKENLIEVV-------------- 410

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  A + L+L RLT      +  E   L   IK+  DIL +  
Sbjct: 411 ------------EFTEEQAEATVMLQLYRLTNTDIVALEGEHKELEALIKQLRDILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +K +  + R +        + ++ E     E+++++++  GY+KR  +
Sbjct: 459 ALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDTEVMEPSEEVILSMTRHGYIKRTSI 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A          + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +        ++    ++    + + VFAT++G ++++ +  F     +  
Sbjct: 574 LGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMIKKSTVPLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA K+   D+++SV    ++  I + T  G  + +  S +    G  + GV+ I+L   
Sbjct: 631 LIATKVKENDDLISVMRFEKDQLITVITNKGMSLTYNTSEL-SDTGLRAAGVKSINLKAE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V   D                                               
Sbjct: 690 DFVVMTEGVSENDT---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DND 851
                  IL  +++G  KR S    +++ R+ +GI      K N    +VA   V  ++ 
Sbjct: 704 -------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKNNPH-RIVAAHVVTGEHS 755

Query: 852 QIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           Q  L S      G +     N+I  + + T G  I  T     V+ +
Sbjct: 756 QYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEVIDM 797



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 13/211 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA---DYDERI 752
           IL  T+ G   R   ++IR F   N+ GV  I L  GD ++    V   D      ++  
Sbjct: 504 ILSMTRHGYIKR---TSIRSF---NASGVEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGR 557

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +     +   +  +  S       +  +     ++    + F +  ++ G  K++
Sbjct: 558 YLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDAFYVFATQNGMIKKS 617

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +   F+ + R  K + AT V +      L++V     +  I ++++KG  +    +E+  
Sbjct: 618 TVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITVITNKGMSLTYNTSELSD 673

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                 GV   +   ++ VV  E + E++ +
Sbjct: 674 TGLRAAGVKSINLKAEDFVVMTEGVSENDTI 704


>gi|308234790|ref|ZP_07665527.1| DNA topoisomerase IV subunit A [Gardnerella vaginalis ATCC 14018]
 gi|311114503|ref|YP_003985724.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
 gi|310945997|gb|ADP38701.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella
           vaginalis ATCC 14019]
          Length = 889

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 269/891 (30%), Positives = 425/891 (47%), Gaps = 125/891 (14%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  
Sbjct: 13  DPRKVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLTP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
              Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA
Sbjct: 73  EHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMA
Sbjct: 132 SRYTEARLAPAALGMNADINEDTVDFAPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +P+  LD LM+I+ GPD+P G +I+GR+GI+ AY TGRG+
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPNATLDDLMQIVPGPDWPGGGIIIGRSGIREAYETGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              R  +HIE  +  ++ I+VTE+P+ V    +LE+I++ ++ +++  I+   D +D   
Sbjct: 252 FTTRSKTHIENVTARKKAIIVTELPFMVGPERVLERISQGIKARKLDGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R 
Sbjct: 312 GTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWILHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++ LNKA++R H++ GL +A+ ++DEV+++IR S + ETA+ +L+        
Sbjct: 372 TVIRRRSEFRLNKAKERLHLVEGLLLAMLDIDEVIQVIRSSEDAETAKSKLIS------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E N L  +I E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEGEKNDLLQKIDE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC-------------- 532
             +ILSS S+L  ++  E+     + DTPRRT +++   D                    
Sbjct: 466 LNEILSSASQLDKVVIAEMDYAVKQWDTPRRTILLDEQEDGSFTPVCTKNSKEVNSDSAM 525

Query: 533 -------------------------------------IVREDMVVTVSHLGYVKRVPLSV 555
                                                +  E   V +S  G + R  +  
Sbjct: 526 DAVIAANQLTNAQADVAAAASAARKSGDTDATSAALQLSDEPCAVALSTSGLIARTSVET 585

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA-- 613
           +       + +S      +    ++F  +T  +    +S G +    V  LP  +     
Sbjct: 586 F------NRWQSHSSNIFDTPCLNVFTTTTRATYALITSAGRLVIAHVADLPHLNQGDEN 639

Query: 614 ---------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                    +   L+         R   ++       S +   +   TK+G V+R     
Sbjct: 640 VSESLSNGVKASELLTSTQSTDPIRGEKVVAAIALSESDSKTPLAIGTKNGVVKRWNFES 699

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              +       + L   D +++      E+ ++  +     + F    +R   GR+S G+
Sbjct: 700 PTTM--DSWSIIDLKDNDSVINAALANDEDRLVFISSDSSLLTFDAKQVRA-QGRSSAGM 756

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            GI L +   V + A+V   D +++         SA   ++     +  +          
Sbjct: 757 AGIRLNEECTVSAFAVVAKNDVEWNYEEGENGLFSASGSVVFTLAGDSDA---------- 806

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                           L  +E G  K T    +    R   G+R+    K 
Sbjct: 807 ----------------LAGTENGAAKITPLEMYPTKGRGTGGVRSQRFLKG 841



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 85/267 (31%), Gaps = 45/267 (16%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +  G + R  +  F +                 L+V T T      L T  G
Sbjct: 565 DEPCAVALSTSGLIARTSVETFNRWQSHSSNIF----DTPCLNVFTTTTRATYALITSAG 620

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + V   ++ +               L +GD+ +S ++     A                +
Sbjct: 621 RLVIAHVADLP-------------HLNQGDENVSESLSNGVKASELLTSTQSTDPIRGEK 667

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
           +++      +  K   ++                      ++ G  KR +      +   
Sbjct: 668 VVAAIALSESDSKTPLAIG---------------------TKNGVVKRWNFES-PTT--- 702

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              + +  +  + +  +++     ND D+++ +S   +L+     ++R   R++ G+   
Sbjct: 703 ---MDSWSIIDLKDNDSVINAALANDEDRLVFISSDSSLLTFDAKQVRAQGRSSAGMAGI 759

Query: 884 STAKDERVVSVERIRESEIVDEAESTE 910
              ++  V +   + ++++    E  E
Sbjct: 760 RLNEECTVSAFAVVAKNDVEWNYEEGE 786


>gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 823

 Score =  621 bits (1602), Expect = e-175,   Method: Composition-based stats.
 Identities = 279/884 (31%), Positives = 450/884 (50%), Gaps = 81/884 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   KA  R  ++ GL   ++ LDEV+ +IR S N    +  L                
Sbjct: 362 PFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK    TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   ++  +       +   +     +      AT+ G ++R +  +F      
Sbjct: 571 KDIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTY 628

Query: 672 GKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ ++
Sbjct: 629 RSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMN 687

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D + S  I   +      +   +K +S +  L +   +    +  +   + +    
Sbjct: 688 LKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFL 747

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                         V+E+GF       DF                             V+
Sbjct: 748 AGA-----------VAEQGF-----VGDF-------------------------FSTEVD 766

Query: 849 DNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 767 VNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 810



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 68/532 (12%), Positives = 147/532 (27%), Gaps = 74/532 (13%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q        +  +       +            
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINY--NFNMVAIDNFTPRQVGIVPILSSYIAH 352

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VS 543
               IL+         ++ L  V+  +        V  L+   +     +E++ V+   +
Sbjct: 353 RREVILARSPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFT 412

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
                  V L +YR                 + +  L                 +Y    
Sbjct: 413 EEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLMK 464

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L                 L+  E     +              V  TK G ++R    
Sbjct: 465 KELREVKKNFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPR 518

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            F          +     D ++ V++      +L+ T LG  +  PI  +          
Sbjct: 519 SFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA--------- 566

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                +   D                                    E ++    +     
Sbjct: 567 ----DIRWKD----------------------------------IGEHLSQTITNFETNE 588

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGAL 841
            I      +           +  G  KR    +F    + R  K ++   +   ++   +
Sbjct: 589 AILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQI 645

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 646 VAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 696


>gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
 gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1]
          Length = 799

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 287/890 (32%), Positives = 441/890 (49%), Gaps = 110/890 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    +  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ + KC
Sbjct: 14  QVIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPDRPFRKC 73

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+AL R+ Q +S R  L+ G GNFGS+DGDPPAA RYTE R
Sbjct: 74  ARVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAMRYTETR 133

Query: 135 LQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L   AH + L ++ +  VDF PN+D S +EP+VL A+ P +L+NG  GIAVGMATNIP H
Sbjct: 134 LAAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMATNIPPH 193

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD  +A+ID P + L  L+  + GPDFPTG VI+   G+  AY TGRG+I +RGV
Sbjct: 194 NLGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEGAGLLRAYRTGRGTITLRGV 253

Query: 254 SHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           + +E  +       R+ IVVTE+PYQVNKAA +EK+A+LV + R+  IADLRDESDR+G 
Sbjct: 254 ATLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRDESDREGL 313

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A A  +L QLY  T+LQ  + +N++AL G +P + +L  IL  F+ FRE+ 
Sbjct: 314 RVVIELKRDAPAAQLLEQLYHLTALQVTYGINLMALVGNQPRQLSLKEILSEFLQFREQT 373

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++R+ ++ L  A+ R HV+ GL I++  +++V+ I+R + +   A+ ELM R        
Sbjct: 374 LLRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMIR-------- 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                             + LS+ Q  A++ + L RLT   R ++  E   L   I    
Sbjct: 426 ------------------LGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQ 467

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            ++  R   L  +K+EL  +K E   PR T+I+      E       + + + +S+ G +
Sbjct: 468 TLIHQRPERLKALKKELRQLKKEFGDPRLTQILRETPAPEAVPDCGGDSLWLEMSYRGDL 527

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                  +      G                 F   T   +  F+  G VY   V RLP+
Sbjct: 528 PLQTWRPWSEPLPLG-----------------FSAQTSDRLWVFTESGKVYPLSVERLPV 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S +   +    +  L +  +  T++     +++ +   ++  T+ G ++    S    +
Sbjct: 571 TSHREGDRDQPLLTLLPESAQGETLLSVIPSQATADK--LILLTRQGRIKVIPSSSLQNL 628

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
              G    KL + D +  V      + ++L T  G+   F +  I    GR   G   + 
Sbjct: 629 RGRGLQLTKLKAGDTLGWVLPAQG-DHLVLATSRGRVFHFFLPDI-PVLGRLHQGQAAVR 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++ + ++    +   +                                           
Sbjct: 687 LSRQEILVGAIALSEHENV----------------------------------------- 705

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                      IL  +  G GK+       +      G  A  + +  ++  L  +    
Sbjct: 706 -----------ILV-TASGLGKQVPLSLIEVVPLGHLGQLAIPLGQ--KLDRLAGIG--R 749

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            +  + LV+ +         EI I +R   G  I      E+V +V  + 
Sbjct: 750 GSRPLALVTTQERAWITHGEEIPILNREVMGGAIAPLDPGEQVQAVVALA 799



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 7/138 (5%)

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
            GD ++        S +G             ++ IL ++ +G  K   S    + N  G+
Sbjct: 575 EGDRDQPLLTLLPESAQGETLLSVIPSQATADKLIL-LTRQGRIKVIPSSS--LQNLRGR 631

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G++ T +   + +G ++        D ++L + +G +    + +I +  R  +G      
Sbjct: 632 GLQLTKLKAGDTLGWVLPA----QGDHLVLATSRGRVFHFFLPDIPVLGRLHQGQAAVRL 687

Query: 886 AKDERVVSVERIRESEIV 903
           ++ E +V    + E E V
Sbjct: 688 SRQEILVGAIALSEHENV 705


>gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 895

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 273/913 (29%), Positives = 435/913 (47%), Gaps = 127/913 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ +AA  +  ++G++TVDF PNYD   QEP VL A  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR GI+ AY TGRG+
Sbjct: 192 TNMATHNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIVGRNGIREAYETGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+ + D +D   
Sbjct: 252 LTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL ++T LQ  F++N VAL   +P    L  +L+ +V  R 
Sbjct: 312 GTRLVIEIKTGFDPNAVLAQLLKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+ +L+        
Sbjct: 372 VVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTKLIA------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++ +E + L   I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELESERDDLKQRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED--------- 537
              IL+S   L  ++  E+        TPRRT +++   D +    +   D         
Sbjct: 466 LDRILASAEALDNVVISEMDEAVATYGTPRRTVLLDEDADGKLVPVVAHGDDGVSASAMA 525

Query: 538 -----------------------------------------MVVTVSHLGYVKRVPLSVY 556
                                                      V +S  G + R   +  
Sbjct: 526 AARAAATVSSAAADVAAAAKAATKAGEDNAAAVALQIDDEPCAVMLSATGLIAR---TSE 582

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            A  R     S      +D +  +F  +T +S    +S G +    V  LP+ S      
Sbjct: 583 DALERWENRSSADKRVRDDQIISIFPTTTRSSYGLITSAGRLIVAHVVELPVVSADGPLH 642

Query: 617 -----ALINILSLNQGERITT--------IMPFPEDESSW--NNLYVVFATKHGNVRRNK 661
                    ++ + +               MP  +D          +   T++G ++R  
Sbjct: 643 VTGGVHAEELIGMTENTDPIRGERVIAAIAMPTADDSGDHAAEPAPLALGTRNGVIKRWN 702

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                 +       + L   DE+L+      E+ ++  +     + F    +R   GR +
Sbjct: 703 RESPTTM--DSWSIIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFDAKNVRP-QGRTA 759

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+ GI LA+G  V + A++      ++         SA   ++     +  +L      
Sbjct: 760 GGMAGIRLAEGCSVAAFAVIPANKVAWNYEEGDNGLFSASGAVVLTVAGDSEALPG---- 815

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                 +E G  K T    +    R   G+R+    K  +   L
Sbjct: 816 ----------------------TENGSAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLIL 853

Query: 842 --VAVFPVNDNDQ 852
             V  +PV+ + +
Sbjct: 854 AFVGTYPVHASTE 866



 Score = 50.9 bits (120), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 70/260 (26%), Gaps = 38/260 (14%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R       +   +   A K    D+I+S+   T  +   L T
Sbjct: 561 QIDDEPCAVMLSATGLIARTSEDALERW-ENRSSADKRVRDDQIISIFPTTTRSSYGLIT 619

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+ +   +  +                     V+S    LH               + 
Sbjct: 620 SAGRLIVAHVVELP--------------------VVSADGPLHVTGGVHAEELIGMTENT 659

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                      I     D S +                     +  G  KR +      +
Sbjct: 660 DPIRGERVIAAIAMPTADDSGDHAAEPAPLALG----------TRNGVIKRWNRES-PTT 708

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                 + +  +  + +   ++A     D D+++ VS   +L+      +R   R   G+
Sbjct: 709 ------MDSWSIIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFDAKNVRPQGRTAGGM 762

Query: 881 VIFSTAKDERVVSVERIRES 900
                A+   V +   I  +
Sbjct: 763 AGIRLAEGCSVAAFAVIPAN 782


>gi|27467955|ref|NP_764592.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis ATCC
           12228]
 gi|38604845|sp|Q8CSN8|PARC_STAES RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|27315500|gb|AAO04634.1|AE016747_131 topoisomerase IV subunit A [Staphylococcus epidermidis ATCC 12228]
          Length = 800

 Score =  621 bits (1601), Expect = e-175,   Method: Composition-based stats.
 Identities = 280/887 (31%), Positives = 463/887 (52%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E +   +    ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEV---VNVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+  +DE+++V     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K      +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKKPH-RIVAGAVVKENHT 755

Query: 853 IILVSDK-----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +     G      ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYIVFSQHHEEYG-----NIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 23/290 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MK 677
           I  L     E    I        +   L  V   +   +++     F     S   A + 
Sbjct: 433 IEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKK----KFKVDRLSTIEAEIS 488

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++ 
Sbjct: 489 EIKIDKEVMVP---SEEVILSLTQHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLK 539

Query: 738 MAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              V   D      ++       +     +   +  +  S       +  +     ++  
Sbjct: 540 HESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDF 599

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E F +  ++ G  K++S+  F+ + R  K +    V   +E+  +V +    ++DQ+I
Sbjct: 600 KNEAFYIMATKNGMIKKSSASQFKTT-RFNKPLINMKVKDKDELINVVRL----ESDQLI 654

Query: 855 -LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ KG  +    NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 655 TVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  E+   +
Sbjct: 490 IKIDKEVMVPSEEVILSLTQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQ 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+ +  P+  +        +G    + + + + ++V+   +    D   + 
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIR-WKELGQHISQIVPIDEDEEVV--NVYNEKDFKNEA 603

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFG 809
                      ++  +   +     K   +++    +E    ++L+   ++TV + KG  
Sbjct: 604 FYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMS 663

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S+ +   +     G+++ ++        +V    VND+D II+V+ +G + R+  N 
Sbjct: 664 LTYSTNELSDTGLRAAGVKSINLKD---EDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV 720

Query: 870 IRIASRATKGVVIFS-TAKD-ERVVSVERIRES 900
           ++ A RA +G+ +     K   R+V+   ++E+
Sbjct: 721 LQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753


>gi|148544014|ref|YP_001271384.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|184153408|ref|YP_001841749.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227364929|ref|ZP_03848973.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|325682448|ref|ZP_08161965.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
 gi|148531048|gb|ABQ83047.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri DSM 20016]
 gi|183224752|dbj|BAG25269.1| topoisomerase IV A subunit [Lactobacillus reuteri JCM 1112]
 gi|227070033|gb|EEI08412.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri MM2-3]
 gi|324978287|gb|EGC15237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           MM4-1A]
          Length = 821

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 272/763 (35%), Positives = 423/763 (55%), Gaps = 43/763 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   NGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R 
Sbjct: 183 HNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ I
Sbjct: 243 KTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RR
Sbjct: 303 ELKRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L++             
Sbjct: 363 TQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKE------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT     ++  E   L   I E   IL+
Sbjct: 411 --------------YNFTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           + + L  ++ +E+ ++K E   PRRT+I   +   +++ +  +  ED+VV VSH GY+KR
Sbjct: 457 NENELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A            +R++D+   +   +T + +  F++LG +    +  +    
Sbjct: 517 SSIRSFKASEAEEN-----GLREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ +   + L   E I   M F + +       ++  T  G V++   +D+    +
Sbjct: 572 WKDTGEHISQTIGLADNEEIIKAMIFDKLD---QPGTIIMGTSDGQVKQTAFNDYKPGSR 628

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    ++++V+     N+   +L  ++ G  VR+ ++ +    G  + GV
Sbjct: 629 YKSHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADV-PVTGIRTAGV 687

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           R I+L   DQV    +V                      +  G
Sbjct: 688 RAINLKDDDQVADQILVKDGQDIAVITQRGAFKEMPVDEIEVG 730



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 12/238 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  +  G ++R+ +  F            L   D  L ++     + + + T LG  + 
Sbjct: 505 VVLVSHAGYIKRSSIRSFKASEAEEN---GLREDDYPLLIQQTNTLSHLFMFTNLGHIIY 561

Query: 708 FPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYD----ERICYMKHMSAQ 761
            PI  I     +++     + I LA  +++I   I    D             +K  +  
Sbjct: 562 RPIHEIADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVKQTAFN 621

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                   +   S+         +      E   +   +LT+S +G+  R    D  ++ 
Sbjct: 622 DYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTG 681

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
               G+RA ++        +     V D   I +++ +G    +PV+EI + +RA +G
Sbjct: 682 IRTAGVRAINLKD---DDQVADQILVKDGQDIAVITQRGAFKEMPVDEIEVGARARRG 736


>gi|149010515|ref|ZP_01831886.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|303254051|ref|ZP_07340168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|303260743|ref|ZP_07346702.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|303263101|ref|ZP_07349031.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265021|ref|ZP_07350935.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|303267482|ref|ZP_07353333.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|303269834|ref|ZP_07355580.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|307127595|ref|YP_003879626.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 670-6B]
 gi|147764996|gb|EDK71925.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP19-BS75]
 gi|302598987|gb|EFL66016.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS455]
 gi|302635754|gb|EFL66259.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638111|gb|EFL68587.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP-BS293]
 gi|302640631|gb|EFL71032.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS458]
 gi|302642988|gb|EFL73284.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS457]
 gi|302645381|gb|EFL75614.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae BS397]
 gi|306484657|gb|ADM91526.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 670-6B]
 gi|332077267|gb|EGI87729.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA17545]
          Length = 811

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 277/873 (31%), Positives = 444/873 (50%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +       T+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|149007201|ref|ZP_01830865.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
 gi|147761239|gb|EDK68206.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP18-BS74]
          Length = 811

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 277/873 (31%), Positives = 443/873 (50%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R  L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREFLVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRTSENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +       T+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRTSENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|315604333|ref|ZP_07879399.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315314039|gb|EFU62090.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 822

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/862 (31%), Positives = 406/862 (47%), Gaps = 106/862 (12%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  +    E ++ I+ + ++ EM+ S+L YA++VI  RA+PD RDGLKPV RRILF M Q
Sbjct: 4   KDHVVDIPEADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQ 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  +K +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LR+ L++G GNFGS+D 
Sbjct: 64  MGLRPDKGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+  +A  L+  L +DTVDF PNYD  F +P VL A +P +LVNG  GI
Sbjct: 123 DGPAAARYTEARMAPSAVDLVTGLDEDTVDFVPNYDNQFMQPEVLPAAFPQLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNI  HNL E + G + ++D+P   +  LM  I GPD P G VI+G  GIK+AY 
Sbjct: 183 AVGMATNIAPHNLCEAIAGVIHLLDHPSASVADLMRYIPGPDLPEGGVIVGLDGIKDAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+   R    IE+ +  +  IVVT++PY V    ++EKI E     R+  I+ +++ 
Sbjct: 243 TGRGAFKTRAKVQIERVTARKMGIVVTQLPYMVGPEKVIEKIKENASAGRLKGISSVQNL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P    L  +L+ F
Sbjct: 303 TDRVHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPRTLGLKEMLQVF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R +V  RR+++ L K  DR H++ GL +A+ ++D+V+ IIR S + E AR  LM   
Sbjct: 363 LDHRLDVTTRRSRFRLGKCEDRLHLVEGLLVAILDIDDVIAIIRSSDDAEVARERLMT-- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q   ILELRL RLT   R ++ +E + L 
Sbjct: 421 ------------------------AFDLSEAQATYILELRLRRLTKFSRIELESERDELV 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-------- 533
            +I +  +IL     L  ++K+EL  V D L TPRRT ++                    
Sbjct: 457 AKIAQLREILDDPELLRALVKKELREVSDRLGTPRRTLLLASTGSPVGAGADDAALAALP 516

Query: 534 -------------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                          +  VV +S  G + RV          GG           D     
Sbjct: 517 SVSRSGKGLDLQIPDDPCVVVLSSSGALARV---------EGGDPLEPGPRAASDGWRAQ 567

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              S  + V   +  G  ++  V  LP       G +L   +           +P    +
Sbjct: 568 LASSVRSQVAVVTQDGIAHRIDVVDLPALPRFDTGLSLAAAMPSELLLHTD-SVPVGLLD 626

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
               ++ V   T  G V+R +     +        + L+  D ++  + C+ + D++  +
Sbjct: 627 PDGTDV-VAMGTARGTVKRLRPDVLARE---EWEVIALEDGDRLVGFDRCSDDADLVFIS 682

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
              Q +R P + +R   GR + G+ G+ L  G + +   +V          +        
Sbjct: 683 SDAQLLRTPAAKVRP-QGRTAGGMAGMKLNAGAEALGFWVVEAPIDAVVVTVAAALGALP 741

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                +                                           K T    +   
Sbjct: 742 GTGQTT------------------------------------------VKVTPLECYPAK 759

Query: 821 NRSGKGIRATDVSKINEIGALV 842
            R G+G+R     +  +   + 
Sbjct: 760 GRGGQGVRCQRFLRGEDRLDVA 781



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            +   LV     +D+  ++ +S    L+R P  ++R   R   G+        
Sbjct: 661 EDGDRLVGFDRCSDDADLVFISSDAQLLRTPAAKVRPQGRTAGGMAGMKLNAG 713


>gi|148988274|ref|ZP_01819721.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
 gi|147925955|gb|EDK77029.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP6-BS73]
          Length = 811

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/873 (31%), Positives = 445/873 (50%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +      AT+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|148984585|ref|ZP_01817853.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|148997069|ref|ZP_01824723.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|307067452|ref|YP_003876418.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200]
 gi|147756769|gb|EDK63809.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           SP11-BS70]
 gi|147922976|gb|EDK74091.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|301799849|emb|CBW32423.1| topoisomerase IV subunit A [Streptococcus pneumoniae OXC141]
 gi|306408989|gb|ADM84416.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus pneumoniae AP200]
          Length = 811

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/873 (31%), Positives = 446/873 (51%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I   + I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
           +  +       +   +     +      AT+ G ++R +  +F         ++   KL 
Sbjct: 570 TNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 143/533 (26%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLV--------AIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +           +  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EAILYVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola]
          Length = 611

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 281/633 (44%), Positives = 412/633 (65%), Gaps = 28/633 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
             +E   +  + I +E++ +Y+ Y+++VI+ RA+PD+RDGLKPVHRRIL+ M + G+  +
Sbjct: 5   QTKEGGAVIPIPIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSS 64

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
               KCA+I G+V+G YHPHG+A++YDAL R+ QD+SLR  +I  QGNFG++ GDPPAA 
Sbjct: 65  GPTRKCAKIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDPPAAY 124

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +++D+ K+TVDF PN+D S +EP VL A++P +L NG  GIAVGMAT
Sbjct: 125 RYTEAKMAKIAETMVEDIKKETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMAT 184

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           N+P HNL E+ D   A IDNP+I++D L + ++GPDFPTG VI GR GIK A+ TGRG I
Sbjct: 185 NMPPHNLREIADAVSAYIDNPEIEIDELCKYMKGPDFPTGGVIYGRKGIKQAFKTGRGKI 244

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQG 307
           ++RG   IE     +E IV TE+PYQVN   ++ +I EL REK I  IA++ DE SDR G
Sbjct: 245 LVRGKFTIEVDKKGKETIVFTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTG 304

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKRGA   V+LNQL+  T+LQS F V  +AL   +PE   L  ++K FV  R +
Sbjct: 305 LRIVIELKRGAITKVVLNQLFAKTALQSSFGVINLALVNGRPETLNLKLLVKYFVEHRVD 364

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRTK+ L KA +RAH+L  L +A+ N+DEV++IIR S + +TA+  LM+R       
Sbjct: 365 VVTRRTKFDLRKAEERAHILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMER------- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                  +VQ +AI++++L RLT L  +D+R EL  L + I   
Sbjct: 418 -------------------FGFDDVQAQAIVDMQLKRLTSLEIEDLRKELQELQVLIAHL 458

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV-EGLLDMEDEDCIVREDMVVTVSHLG 546
            D+L+   ++L +IK+E   + ++    R+T IV + + ++  ED I +E+MV+ +SHLG
Sbjct: 459 KDLLAHPEKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KR+P + Y++Q RGGKG + V + ++DF+  +F  STH  ++F ++ G  Y  KV  +
Sbjct: 519 YIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEI 578

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPED 639
              S  +RG  + ++LS++  E IT ++   E 
Sbjct: 579 QEASRTSRGSHIKSLLSVSSDEEITAVVSLKEF 611



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            K ++  +   +   E+    +    V   + E   ++L  KE+ ++ +S  G+ KR  +
Sbjct: 466 EKILALIKEETNEIAEKFGDERKTDIVADEVEELNIEDLIKKEEMVILISHLGYIKRIPA 525

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             ++  NR GKG  + ++++ + +  +   F  + +D I+ +++ G    + V+EI+ AS
Sbjct: 526 TAYKSQNRGGKGSNSVNLAEDDFLDQI---FTASTHDYIMFITNAGKAYWLKVHEIQEAS 582

Query: 875 RATKGV---VIFSTAKDERVVSVERIRE 899
           R ++G     + S + DE + +V  ++E
Sbjct: 583 RTSRGSHIKSLLSVSSDEEITAVVSLKE 610


>gi|149004065|ref|ZP_01828871.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|149021721|ref|ZP_01835752.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|147757966|gb|EDK64974.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP14-BS69]
 gi|147930182|gb|EDK81168.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae SP23-BS72]
 gi|301801679|emb|CBW34384.1| topoisomerase IV subunit A [Streptococcus pneumoniae INV200]
 gi|327390206|gb|EGE88549.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA04375]
 gi|332076133|gb|EGI86599.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae GA41301]
          Length = 811

 Score =  621 bits (1600), Expect = e-175,   Method: Composition-based stats.
 Identities = 277/873 (31%), Positives = 444/873 (50%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +       T+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D      
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDD------ 680

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++             +    + +R+   +    +  K    V   +  +  +        
Sbjct: 681 VLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAG--- 737

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 738 --AVAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM
           16992]
          Length = 895

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/913 (30%), Positives = 435/913 (47%), Gaps = 127/913 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 13  DPRTVKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ +AA  +  ++ +DTVDF PNYD   QEP VL A  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR GI+ AY TGRG+
Sbjct: 192 TNMATHNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGGVIVGRKGIREAYETGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +D   
Sbjct: 252 LTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  R 
Sbjct: 312 GTRLVIEIKTGFDPNAVLAQLFKHTPLQDNFTINNVALVNGRPHTMGLKEMLQVWVNHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+ +L++       
Sbjct: 372 VVIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIK------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E + L   I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------------------- 524
              IL+S   L  ++  E+        TPRRT +++                        
Sbjct: 466 LDRILASAEALDDVVIAEMDEAVATYGTPRRTVLLDEDADGRLVPVAAHGDDGVSASAVA 525

Query: 525 ---------------------------LDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVY 556
                                       +       + ++    + S  G + R   +  
Sbjct: 526 AARAAATVSSAAADVAAAAKAAKKAGEDNAAAMALQIDDEPCAVMLSATGLIAR---TSE 582

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--------- 607
            A  R     S      +D +  +F  +T +S    +S G +    V  LP         
Sbjct: 583 DALERWENRSSADQRVKDDQIISIFRTTTRSSYGLITSAGRLIVAHVVELPVVSADGPLH 642

Query: 608 --IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN----LYVVFATKHGNVRRNK 661
              G                +GER+   +  P  + S +N      +   T++G V+R  
Sbjct: 643 VTGGVHAEELIGTTENTDPIRGERVIAAIAMPSADDSGDNAVEPTPLALGTRNGVVKRWN 702

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                 +       + L   DE+L+      E+ ++  +     + F    +R   GR +
Sbjct: 703 RESPTTM--DSWSVIDLKDDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRP-QGRTA 759

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G+ GI LA+G    + A+V  +   ++         SA   ++     +  +L      
Sbjct: 760 GGMAGIRLAEGCSAAAFAVVPASKVAWNYEEGENGLFSASGAVVLTVAGDSEALPG---- 815

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                 +E G  K T    +    R   G+R+    K  +   L
Sbjct: 816 ----------------------TENGSAKVTPLEMYPTKGRGTGGVRSQRFLKGQDTLVL 853

Query: 842 --VAVFPVNDNDQ 852
             V  +PV+ + Q
Sbjct: 854 AFVGAYPVHASTQ 866



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 71/276 (25%), Gaps = 50/276 (18%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R       +         ++   D+I+S+   T  +   L T
Sbjct: 561 QIDDEPCAVMLSATGLIARTSEDALERWENRSSADQRVK-DDQIISIFRTTTRSSYGLIT 619

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G+ +   +  +                     V+S    LH               + 
Sbjct: 620 SAGRLIVAHVVELP--------------------VVSADGPLHVTGGVHAEELIGTTENT 659

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TSS 814
                      I     D S +  +                  +  G  KR      T+ 
Sbjct: 660 DPIRGERVIAAIAMPSADDSGDNAVEPTPLALG----------TRNGVVKRWNRESPTTM 709

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             +         +         +   ++A     D D+++ VS   +L+      +R   
Sbjct: 710 DSWS--------VIDLK-----DDDEVLAAAEARDEDRLVFVSTDSSLLTFEAKNVRPQG 756

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R   G+     A+     +   +  S++    E  E
Sbjct: 757 RTAGGMAGIRLAEGCSAAAFAVVPASKVAWNYEEGE 792


>gi|228475990|ref|ZP_04060698.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
 gi|228269813|gb|EEK11293.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis SK119]
          Length = 799

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/886 (32%), Positives = 460/886 (51%), Gaps = 101/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  ID+P+I ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 DEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+ +++  + EVV  RT Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVANRTTY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A  R H++ GL  A++ LDEV+ +IR S N + A+  L++                
Sbjct: 365 DLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   I+E  +IL +  
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  ++    T R + I      + ++ E  +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKKELTEIRKRFKTSRLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + V +++ D +     V+T  + L F++ G      + ++     + 
Sbjct: 519 RSFNASG-----VTEVGLKEGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+SL + ERI   +    +++     + + AT++G ++++  S F     +  
Sbjct: 574 LGQHVSQIVSLEENERI---IDVFNEKTFDGKAFYIIATRNGMIKKSNQSLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA KL + DE+++V   TQE  I + T  G  + +    +    G  + GV+ I+L   
Sbjct: 631 LIATKLKNEDEVVNVLRITQEQMITVITHKGMSLTYSTEEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI                                                       +
Sbjct: 690 DYVI-----------------------------------------------------MTD 696

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              K   I+  +++G  KR +    + + R+ +GI      K N    +VA   V D   
Sbjct: 697 TVDKNNSIIMATQRGAIKRIAKDILQDAKRAQRGITLLKELKKNPH-RIVAAHVVRDETY 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L SDK    G + R+ ++E     + T G  +  T +   V S+
Sbjct: 756 YTLYSDKHAETGEISRIHLSE-----QYTNGSFVVDTNEFGNVKSM 796



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 76/208 (36%), Gaps = 13/208 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD---YDERI 752
           +L  T+ G   R   ++ R F   N+ GV  + L +GD ++    V   D      ++  
Sbjct: 504 VLSMTRHGYIKR---TSTRSF---NASGVTEVGLKEGDSLLKYQTVNTQDTALVFTNKGR 557

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +     +   +  +  S          I +   ++    + F +  +  G  K++
Sbjct: 558 YLFIPIHKIADVRWKELGQHVSQIVSLEENERIIDVFNEKTFDGKAFYIIATRNGMIKKS 617

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +   F+ + R  K + AT +        +V V  +     I +++ KG  +     E+  
Sbjct: 618 NQSLFKTT-RFNKPLIATKLK---NEDEVVNVLRITQEQMITVITHKGMSLTYSTEELSD 673

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRES 900
                 GV   +   ++ V+  + + ++
Sbjct: 674 TGLRAAGVKSINLKDEDYVIMTDTVDKN 701


>gi|242242635|ref|ZP_04797080.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
 gi|242233771|gb|EES36083.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis W23144]
          Length = 800

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/887 (31%), Positives = 462/887 (52%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E +   +    ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEV---VNVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+   D++++V     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LINMKVKDNDKLINVVRLETDQLITVLTHKGMSLTYSTNEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K      +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKKPH-RIVAGAVVKENHT 755

Query: 853 IILVSDK-----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +     G +     +++ ++ + T G  I  T     V S+
Sbjct: 756 KYVVFSQHHEEYGKI-----DDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 105/290 (36%), Gaps = 23/290 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MK 677
           I  L     E    I        +   L  V   +   +++     F     S   A + 
Sbjct: 433 IEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKK----KFKVDRLSTIEAEIS 488

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++ 
Sbjct: 489 EIKIDKEVMVP---SEEVILSLTQHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLK 539

Query: 738 MAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              V   D      ++       +     +   +  +  S       +  +     ++  
Sbjct: 540 HEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDF 599

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E F +  ++ G  K++S+  F+ + R  K +    V   +++  +V +    + DQ+I
Sbjct: 600 KNEAFYIMATKNGMIKKSSASQFKTT-RFNKPLINMKVKDNDKLINVVRL----ETDQLI 654

Query: 855 -LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ KG  +    NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 655 TVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  E    +
Sbjct: 490 IKIDKEVMVPSEEVILSLTQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHEAVNTQ 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+ +  P+  +        +G    + + + + ++V+   +    D   + 
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIR-WKELGQHISQIVPIDEDEEVV--NVYNEKDFKNEA 603

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFG 809
                      ++  +   +     K   +++   +++    ++L+   ++TV + KG  
Sbjct: 604 FYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHKGMS 663

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S+ +   +     G+++ ++        +V    VND+D II+V+ +G + R+  N 
Sbjct: 664 LTYSTNELSDTGLRAAGVKSINLKD---EDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV 720

Query: 870 IRIASRATKGVVIFS-TAKD-ERVVSVERIRES 900
           ++ A RA +G+ +     K   R+V+   ++E+
Sbjct: 721 LQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753


>gi|168493009|ref|ZP_02717152.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183577053|gb|EDT97581.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae
           CDC3059-06]
          Length = 811

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 279/873 (31%), Positives = 447/873 (51%), Gaps = 81/873 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  + IEK  G +E
Sbjct: 181 MIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A+ +++L
Sbjct: 241 QIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+++   KA  R 
Sbjct: 301 NYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVIALIRTSENKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+     +  ++K+E
Sbjct: 395 VSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKE 454

Query: 505 LLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +  TPR + + +    ++++    I  ED  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAAS--- 511

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 +  RD+D +  +    T   +L F+SLG V    +  L     +  G+ L   +
Sbjct: 512 --TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
                E    I+     +   +       T+ G ++R +  +F         ++   KL 
Sbjct: 570 --TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLK 627

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +      + +D++L ++ G  +RF I  +    G  + GV+ ++L + D + S  
Sbjct: 628 DDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKAMNLKEDDVLQSGF 686

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I   +      +   +K +S +  L +   +    +  +   + +               
Sbjct: 687 ICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRVFLAGA-------- 738

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV-SD 858
              V+E+GF       DF                             V+ NDQ +LV S+
Sbjct: 739 ---VAEQGF-----VGDF-------------------------FSTEVDVNDQTLLVQSN 765

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 766 KGTIYESRLQDLNLSERTSNGSFISDTISDEEV 798



 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 144/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 223 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 343 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRTSENKADAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 400 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 451

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 452 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 506 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 554

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 555 -----DIRWKD----------------------------------IGEHLSQTITNFETN 575

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 576 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 632

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 633 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 684


>gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 812

 Score =  620 bits (1599), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/842 (33%), Positives = 444/842 (52%), Gaps = 48/842 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I S+++ D M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K
Sbjct: 2   SKIESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+AL RM+QDW +R  LIE  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L D+ KDTVD+  N+D +  EP VL +R+PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + +  +PD  LD LM+ ++GPDFPTGA++ G  GIK AY TG G I++R  
Sbjct: 182 NLGEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGAIVQGIDGIKKAYETGHGKIIVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G++ QIV+TEIPY+VNKA ++++I E+   K+I  I+++RD+SDR G  +V+E
Sbjct: 242 TSIEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR   +  ILN L++ T LQ  ++ NMVA++  +PER +L  IL A++ F++EV+ +RT
Sbjct: 302 LKRDVDSKGILNYLFKNTDLQVSYNFNMVAISHMRPERLSLKKILVAYLEFQQEVIEKRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           KY L KA+DR H++ GL  A++ LD+V++ IR S N + AR  L++              
Sbjct: 362 KYNLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVK-------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       T   SE Q  AI+ L+L RLT     ++ NE   L  EI +   IL+S
Sbjct: 408 ------------TYDFSEKQADAIVALQLYRLTNTDVTELENEHQHLADEITKDNKILNS 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L  ++  EL ++     + RRT I      + +  +  I  ED++V VSH GY+KR 
Sbjct: 456 PKELNRVLANELRALAKTYRSARRTEIQAEVSDIKINTDVLIPDEDVIVMVSHDGYIKRS 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A            ++DED+   +  ++    +  F++ G +    V+ L     
Sbjct: 516 SIRSYKASTT------DTGLKDEDYPIFMAELNARDHLFMFTNKGNLIYRPVFELADVKW 569

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L+  E I   +     +S       + AT  G+V++   +D       
Sbjct: 570 KDTGEHISQTIGLDADEEI---IGTYAFDSLKQPGTFLIATDQGHVKQTGFADMKPGRTY 626

Query: 672 GKIAM---KLDSRDEILSVETCTQE----NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              A    KL + DE +      +       +LL +  G  +R+ I  +    G  + GV
Sbjct: 627 KSHAYTYEKLKTADERVVAIHYLKTPATAGQMLLISNNGLALRYGIDEV-PVNGARTTGV 685

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + + L   D+V ++ +V   D              A + + +        +         
Sbjct: 686 KSMGLRGVDKVTNLQLVSEDDVLAIVTQRGSFKKLAVKEIPATSRARKGVMILRELKNNP 745

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                   ++ ++Q +   ++          D+ +  R   G    DV   +  G  V++
Sbjct: 746 HRIVDFCRIESEDQPLEVRTDHRRVHDILPADYSLGGRYSNGSFVIDV---DSEGTPVSI 802

Query: 845 FP 846
            P
Sbjct: 803 RP 804



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 76/271 (28%), Gaps = 54/271 (19%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +    D    +   +V  +  G ++R+ +  +            L   D  + +      
Sbjct: 489 IKINTDVLIPDEDVIVMVSHDGYIKRSSIRSYKASTTDTG----LKDEDYPIFMAELNAR 544

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYDER 751
           + + + T  G  +  P+  +     +++     + I L   +++I               
Sbjct: 545 DHLFMFTNKGNLIYRPVFELADVKWKDTGEHISQTIGLDADEEIIGTYAFDSLKQPGTFL 604

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           I   +    Q                 +  +   ++ER                      
Sbjct: 605 IATDQGHVKQTGFADMKPGRTYKSHAYTYEKLKTADER---------------------- 642

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
                          + A    K                 Q++L+S+ G  +R  ++E+ 
Sbjct: 643 ---------------VVAIHYLKTPATAG-----------QMLLISNNGLALRYGIDEVP 676

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +    T GV        ++V +++ + E ++
Sbjct: 677 VNGARTTGVKSMGLRGVDKVTNLQLVSEDDV 707


>gi|314936491|ref|ZP_07843838.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655110|gb|EFS18855.1| DNA topoisomerase IV, A subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 799

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 285/886 (32%), Positives = 461/886 (52%), Gaps = 101/886 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  L+ D+ K+TV F PNYD +  EP+VL AR+PN+LVNG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+   +  ID+P+I ++ LM+ I+GPDFPTG +I G  GIK AY TG+G IV+R    
Sbjct: 185 DEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK +++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+ +++  + EVV  RT Y
Sbjct: 305 KDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVANRTTY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            LN A  R H++ GL  A++ LDEV+ +IR S N + A+  L++                
Sbjct: 365 DLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      +  E   L   I+E  +IL +  
Sbjct: 410 -----------FDFTEAQAEAIVMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHD 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  ++    T R + I      + ++ E  +  E++V++++  GY+KR   
Sbjct: 459 ALLNVIKKELTEIRKRFKTSRLSSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + V +++ D +     V+T  + L F++ G      + ++     + 
Sbjct: 519 RSFNASG-----VTEVGLKEGDSLLKYQTVNTQDTALVFTNKGRYLFIPIHKIADVRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+SL + ERI   +    +++     + + AT++G ++++  S F     +  
Sbjct: 574 LGQHVSQIVSLEENERI---IDVFNEKTFDGKAFYIIATRNGMIKKSNQSLFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            IA KL + DE+++V   TQE  I++ T  G  + +    +    G  + GV+ I+L   
Sbjct: 631 LIATKLKNEDEVVNVLRITQEQMIIVITHKGMSLTYSTEEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D VI                                                       +
Sbjct: 690 DYVI-----------------------------------------------------MTD 696

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              K   I+  +++G  KR +    + + R+ +GI      K N    +VA   V D   
Sbjct: 697 TVDKNNSIIMATQRGAIKRIAKDILQDAKRAQRGITLLKELKKNPH-RIVAAHVVRDETY 755

Query: 853 IILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L SDK    G + R+ ++E     + T G  +  T +   V S+
Sbjct: 756 YTLYSDKHAETGEISRIHLSE-----QYTNGSFVVDTNEFGNVKSM 796



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 13/208 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD---YDERI 752
           +L  T+ G   R   ++ R F   N+ GV  + L +GD ++    V   D      ++  
Sbjct: 504 VLSMTRHGYIKR---TSTRSF---NASGVTEVGLKEGDSLLKYQTVNTQDTALVFTNKGR 557

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +     +   +  +  S          I +   ++    + F +  +  G  K++
Sbjct: 558 YLFIPIHKIADVRWKELGQHVSQIVSLEENERIIDVFNEKTFDGKAFYIIATRNGMIKKS 617

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +   F+ + R  K + AT +        +V V  +     II+++ KG  +     E+  
Sbjct: 618 NQSLFKTT-RFNKPLIATKLK---NEDEVVNVLRITQEQMIIVITHKGMSLTYSTEELSD 673

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRES 900
                 GV   +   ++ V+  + + ++
Sbjct: 674 TGLRAAGVKSINLKDEDYVIMTDTVDKN 701


>gi|194467942|ref|ZP_03073928.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
 gi|194452795|gb|EDX41693.1| DNA topoisomerase IV, A subunit [Lactobacillus reuteri 100-23]
          Length = 821

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 271/740 (36%), Positives = 421/740 (56%), Gaps = 43/740 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   NGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R 
Sbjct: 183 HNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ I
Sbjct: 243 KTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RR
Sbjct: 303 ELKRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L++             
Sbjct: 363 TQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKE------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT     ++  E   L   I E   IL+
Sbjct: 411 --------------YNFTPEQAEAIVTLQLYRLTNTDVTELEKEQEQLNSRINEYQLILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           + + L  ++ +E+ ++K E   PRRT+I   +   +++ +  +  ED+VV VSH GY+KR
Sbjct: 457 NENELAKVLTKEIRAIKKEFGNPRRTKIENHVEKLEIDTKVTVANEDVVVLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A            +R++D+   +   +T + +  F++LG +    +  +    
Sbjct: 517 SSIRSFKASEAEEN-----GLREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ +   + L   E I   M F + +       ++  T  G V++   +D+    +
Sbjct: 572 WKDTGEHISQTIGLADNEEIIKAMIFDKLD---QPGTIIMGTSDGQVKQTAFNDYKPGSR 628

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    ++++V+     N+   +L  ++ G  VR+ ++ +    G  + GV
Sbjct: 629 YKSHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADV-PVTGIRTAGV 687

Query: 725 RGISLAKGDQVISMAIVLHA 744
           R I+L   DQV    +V   
Sbjct: 688 RAINLKDDDQVADQILVKDG 707



 Score = 75.6 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 12/238 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  +  G ++R+ +  F            L   D  L ++     + + + T LG  + 
Sbjct: 505 VVLVSHAGYIKRSSIRSFKASEAEEN---GLREDDYPLLIQQTNTLSHLFMFTNLGHIIY 561

Query: 708 FPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYD----ERICYMKHMSAQ 761
            PI  I     +++     + I LA  +++I   I    D             +K  +  
Sbjct: 562 RPIHEIADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVKQTAFN 621

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                   +   S+         +      E   +   +LT+S +G+  R    D  ++ 
Sbjct: 622 DYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNENCSLLTISRQGYAVRYDVADVPVTG 681

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
               G+RA ++        +     V D   I +++ +G    +PV+EI + +RA +G
Sbjct: 682 IRTAGVRAINLKD---DDQVADQILVKDGQNIAVITQRGAFKAMPVDEIEVGARARRG 736


>gi|317968471|ref|ZP_07969861.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0205]
          Length = 830

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 282/889 (31%), Positives = 440/889 (49%), Gaps = 113/889 (12%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                D  +E+ I  + +  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++
Sbjct: 7   EKPLPDPSDERRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHEL 66

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD D
Sbjct: 67  GLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDD 126

Query: 124 PPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           PPAA RYTE RL   A+  +LD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GI
Sbjct: 127 PPAAMRYTETRLAPIANEAMLDEIGSDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCTGI 186

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEVVD  +A++  P++  + L+E++ GPDFPTG  +L  +G+++ Y 
Sbjct: 187 AVGMATNIPPHNLGEVVDALIALVRKPELSDEKLLELVPGPDFPTGGEVLTGSGLRDTYL 246

Query: 243 TGRGSIVIRGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            GRGSI +RGV+HIE+    + +     +V+TE+PYQ++KA  +EK+AE V + +I  IA
Sbjct: 247 YGRGSIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIA 306

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDESDR G RVV+EL+R A+ + +L  L R T+LQS +   ++AL   KP + +L  +
Sbjct: 307 DIRDESDRDGMRVVVELRRDANPEKVLADLQRRTALQSNYGAILLALVHGKPIQLSLRQL 366

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ +RE  ++RRTK+ L +A DR  V+ GL  A+  L  V+ +I  +P+  +A+  L
Sbjct: 367 LQEFLDYRELTIIRRTKHALKRAEDRLEVVEGLITALNALQRVIEMITAAPDASSAKARL 426

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                        + ++E Q  A+L + L RLTGL ++ +R E 
Sbjct: 427 --------------------------QVHLDINERQADAVLAMPLRRLTGLEQESLRKEA 460

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           + L  E      +L  R  LL  +  E  ++K    TPRRTR+VEG  ++  +    +  
Sbjct: 461 DDLRQERARLRHLLDERPALLDTMVAEFKALKKRFATPRRTRLVEGGDELVAQRTAAQRP 520

Query: 538 MVVT--------VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-----DEDFVTDLFIVS 584
                       +   G +        +       GR  +        +      +  +S
Sbjct: 521 NTELLRQRAFEGLPSDGRLVIQADGQVKVIGPQLLGRLHLDEPAPLGDNPSPARLILPIS 580

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           +  ++L F+  G   +  + R                  L +G     ++          
Sbjct: 581 SRPALLAFTDAG---RVALLRWEFAG----QNPGTLEKFLPEGMSGERVVQLLPLPQEAE 633

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              V   +  G  +R  L++F  ++      +KL     +  V  C   +D+++ +  G+
Sbjct: 634 GKSVGLLSSDGRFKRLPLAEFQDLSGRATSILKLKEGVSLKRVVLCQDGDDLMVGSSTGR 693

Query: 705 CVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +R  ++       GRN+ G   + L  G++VI  A V    A                 
Sbjct: 694 LLRLEVNEENLPVMGRNAQGPVLLRLLPGEEVIGAAAVNTDGA----------------- 736

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                               +   + +G  K+  + D R  +R 
Sbjct: 737 ------------------------------------VWVATRQGSIKQLDASDIRQCHRG 760

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQII--LVSDKGTLIRVPVNEI 870
             G       + +    +V +   N    ++  L+SD G  +R+   E+
Sbjct: 761 DIGQICIRFGQRD--DQVVDLQSSNAA--VLGALLSD-GRSVRIDSAEL 804



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRS 823
              +   +     +      + +      + + + +  +S  G  KR    +F+ +S R+
Sbjct: 602 AGQNPGTLEKFLPEGMSGERVVQLLPLPQEAEGKSVGLLSSDGRFKRLPLAEFQDLSGRA 661

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVV 881
                   + +   +  +V      D D +++ S  G L+R+ VNE  + +  R  +G V
Sbjct: 662 TS---ILKLKEGVSLKRVV---LCQDGDDLMVGSSTGRLLRLEVNEENLPVMGRNAQGPV 715

Query: 882 IFSTAKDERVVSVERI 897
           +      E V+    +
Sbjct: 716 LLRLLPGEEVIGAAAV 731


>gi|57866862|ref|YP_188505.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis RP62A]
 gi|251810788|ref|ZP_04825261.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282876209|ref|ZP_06285076.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|293366679|ref|ZP_06613355.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|81674759|sp|Q5HPI5|PARC_STAEQ RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|57637520|gb|AAW54308.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis RP62A]
 gi|251805716|gb|EES58373.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281295234|gb|EFA87761.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis SK135]
 gi|291318980|gb|EFE59350.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329735889|gb|EGG72168.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU028]
          Length = 800

 Score =  620 bits (1598), Expect = e-175,   Method: Composition-based stats.
 Identities = 279/887 (31%), Positives = 463/887 (52%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E +   +    ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEV---VNVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+  +DE+++V     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K      +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKKPH-RIVAGAVVKENHT 755

Query: 853 IILVSDK-----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +     G      ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYIVFSQHHEEYG-----NIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 23/290 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MK 677
           I  L     E    I        +   L  V   +   +++     F     S   A + 
Sbjct: 433 IEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKK----KFKVDRLSTIEAEIS 488

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++ 
Sbjct: 489 EIKIDKEVMVP---SEEVILSLTQHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLK 539

Query: 738 MAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              V   D      ++       +     +   +  +  S       +  +     ++  
Sbjct: 540 HESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDF 599

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E F +  ++ G  K++S+  F+ + R  K +    V   +E+  +V +    ++DQ+I
Sbjct: 600 KNEAFYIMATKNGMIKKSSASQFKTT-RFNKPLINMKVKDKDELINVVRL----ESDQLI 654

Query: 855 -LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ KG  +    NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 655 TVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  E+   +
Sbjct: 490 IKIDKEVMVPSEEVILSLTQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQ 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+ +  P+  +        +G    + + + + ++V+   +    D   + 
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIR-WKELGQHISQIVPIDEDEEVV--NVYNEKDFKNEA 603

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFG 809
                      ++  +   +     K   +++    +E    ++L+   ++TV + KG  
Sbjct: 604 FYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMS 663

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S+ +   +     G+++ ++        +V    VND+D II+V+ +G + R+  N 
Sbjct: 664 LTYSTNELSDTGLRAAGVKSINLKD---EDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV 720

Query: 870 IRIASRATKGVVIFS-TAKD-ERVVSVERIRES 900
           ++ A RA +G+ +     K   R+V+   ++E+
Sbjct: 721 LQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753


>gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
 gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI]
          Length = 799

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 267/727 (36%), Positives = 438/727 (60%), Gaps = 44/727 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I +++I DEM++SY  Y+++VI+ RA+PD+RDGLKPVHRR+L+GM + G  ++K Y
Sbjct: 3   EKEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKNY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G V+GKYHPHG++++YDA+ RMAQ WSLR LLI+GQGNFGS+D DPPAA RYT
Sbjct: 63  RKSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+K +  +L DL K+TVD + N+D S +EP+VL    PN+L+NG  GIAVGMATN+P
Sbjct: 123 EIKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E ++   + ID   I ++ LM+ I+ PDFPTG +I G  G+K  + TGRG I++R
Sbjct: 183 PHNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIYGYEGVKKYFLTGRGKILLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              H E+   +R  ++V EIPYQ+NK  ++ K  +LV+E ++  ++++RDESDR G R+V
Sbjct: 243 SKVHFEEI-NNRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRIV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
             +K+      +LN L++ TSL++ F VN +AL   KP    L  ++K FV  R +V++R
Sbjct: 302 YNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGKPTILNLKDLIKHFVNHRHDVIIR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY LN+A++RAH++ G  I + NL+ V+ +I+ S +   A+++++ +           
Sbjct: 362 RTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILIK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q ++ILEL+L  LT L    I+ E   +  +I     I+
Sbjct: 411 ---------------YNLSEIQVKSILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKII 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
           S++     IIK+EL  VK +    RRT I    L    E+ +     V+T+++ GY+K+ 
Sbjct: 456 SNKFLQKKIIKKELNIVKTKYGDLRRTEINYLGL----ENEVYNNKFVITITNTGYIKKN 511

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L+ Y+                ++ +  + I   +  +LFF   G  +  KV+++P    
Sbjct: 512 YLNKYK--------IGVTYKCKKNNLEKIIIAKNYQDILFFYENGKYFLLKVFKIPEVLK 563

Query: 612 QARGKALINILSLNQGERITTIMPF--PEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           +++G+A+ N++ +N+ E+I + +      D+   N  YV+  TK+G +++  L  + +  
Sbjct: 564 KSKGQAIQNLIKINKKEKICSSILIEKNNDKKYLNKNYVILITKNGIIKKTTLIQYYK-- 621

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            + K  +K+ ++D I+  +   + ++I +  K G+ ++F  S I+  A +N + +  I+ 
Sbjct: 622 -NPKNLIKIINKDYIIYAKLTNENSEIFIAEKSGKIIKFDESTIKKIALKNDLYIICIND 680

Query: 730 AKGDQVI 736
            K + ++
Sbjct: 681 LKKEYIL 687



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 93/655 (14%), Positives = 199/655 (30%), Gaps = 103/655 (15%)

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEV 368
           + + +        I+  +    S      +++  L  Y K   F   GI+  +   ++  
Sbjct: 173 IAVGMATNMPPHNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIYGYEGVKKYF 232

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS----PNPETARRELMQRSWNA 424
           +  R K LL     + H           +DE+   I          +  +   ++   N 
Sbjct: 233 LTGRGKILLR---SKVHFEEINNRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNI 289

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            D  D   +    +     D    L+ +     LE     +  +   + +  + +L   I
Sbjct: 290 RDESDRNGMRIVYNIKQNVDKQRLLNNLFKETSLETSF-HVNNIALVNGKPTILNLKDLI 348

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           K  ++       +         +            IV   L+   E     +D       
Sbjct: 349 KHFVN-HRHDVIIRRTKYDLNQAKNRAHIIEGF-YIVLNNLETVIELIKSSKDRNDA--K 404

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
              + +  LS  + +       + +   +   + + +I               +Y  K  
Sbjct: 405 KKILIKYNLSEIQVKSILELKLNSLTKLENKKIKEEYIHIRKK----------IYFLKKI 454

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMP-FPEDESSWNNLYVVFATKHGNVRRNKLS 663
                  +   K  +NI+    G+   T +     +   +NN +V+  T  G +++N L+
Sbjct: 455 ISNKFLQKKIIKKELNIVKTKYGDLRRTEINYLGLENEVYNNKFVITITNTGYIKKNYLN 514

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +            L+       +       DIL   + G+     +  I     + S G
Sbjct: 515 KYKIGVTYKCKKNNLEK------IIIAKNYQDILFFYENGKYFLLKVFKIPEVL-KKSKG 567

Query: 724 VR---GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                 I + K +++ S  ++   +        Y+  ++    +      +      +  
Sbjct: 568 QAIQNLIKINKKEKICSSILIEKNNDKKYLNKNYVILITKNGIIKKTTLIQYYKNPKNLI 627

Query: 781 VEGNISEERCQELKLKE---------------------------------------QFIL 801
              N       +L  +                                        ++IL
Sbjct: 628 KIINKDYIIYAKLTNENSEIFIAEKSGKIIKFDESTIKKIALKNDLYIICINDLKKEYIL 687

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            VSEKGF K ++S           GI+  +V+K  + G LVA+  V + + II+++  G 
Sbjct: 688 VVSEKGFVKISNS----------IGIKTINVTK--KTGFLVAMKNVINKNDIIIINKYGL 735

Query: 862 LIRVPVNEIRIASRA------------------TKGVVIFSTAKDERVVSVERIR 898
             R+P+  I    R                   TKG+ + +   D+++  V ++ 
Sbjct: 736 TFRIPIFLIGRGRRGRRGRRGRRGRRGRRGRRGTKGIKLINLKYDDKITYVAKVE 790


>gi|229829025|ref|ZP_04455094.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
 gi|229792188|gb|EEP28302.1| hypothetical protein GCWU000342_01110 [Shuttleworthia satelles DSM
           14600]
          Length = 747

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 279/740 (37%), Positives = 414/740 (55%), Gaps = 27/740 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+  + I     +D MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K
Sbjct: 3   EKIREQIIETEYSDVMQKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+ MGKYHPHG+A+IYDAL  M+QD+   + L++G GNFGS++GD  AA R
Sbjct: 63  PYRKSARIVGDTMGKYHPHGDASIYDALVVMSQDFKKSVPLVDGHGNFGSIEGDGAAAMR 122

Query: 130 YTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL + A    L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 123 YTEARLSQIAQEAYLADLDKDLVDFIPNFDETEKEPEVLPVRIPNLLVNGADGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+DG +A + NP+I+   +ME I GPDFPTG ++  R  +   Y+TG G I
Sbjct: 183 SIPQHNLGEVIDGVIAYMKNPEINTRQMMEYIPGPDFPTGGIVTNRDELLAIYSTGAGKI 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDR 305
            IRG + IEK  G RE IVV+EIPY +  A + +       LV  K+  DI D+ + S +
Sbjct: 243 KIRGKASIEKIKGGREAIVVSEIPYTMIGANIGKFLNDTYALVESKKTSDIVDISNMSSK 302

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELKRGA A  +LN LYR T L+  F VNM+A+   KPE   ++ I++  V F+
Sbjct: 303 DGIRIVIELKRGADAQNVLNLLYRKTRLEDTFGVNMLAVAEGKPETMGIVPIIRHHVNFQ 362

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL K +++  +  GL  AV  +D ++ I+R S + + AR  L+       
Sbjct: 363 YELATRKYTNLLKKEKEKKEIQEGLIKAVDVIDLIIEILRGSRSVKMARACLVDGITEG- 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                  +   S  +      ++ ++ Q  AIL++R+ RL GL  + +R +       I+
Sbjct: 422 -------IRFKSEQSEKDARLLHFTQRQADAILQMRMYRLIGLEIEQLRADYEKTMQNIQ 474

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E +DIL  R+ +  +I ++L  +K      RRT I      + +E  I  ++MVV +   
Sbjct: 475 EDMDILEHRASMARVIIRDLKEIKKTFARKRRTLIDNVAEAVIEEKPIEEQEMVVLMDRF 534

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK + LSVY   +             +     +   S    +  FSS G ++  KV  
Sbjct: 535 GYVKAIDLSVYDRNQEAA----------DKENKYVIHCSNLDRLAVFSSTGQLHLIKVLD 584

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P G  + +G  + N   L++ +     + F E   +     V F T+ G +++   ++F
Sbjct: 585 MPGGKFRDKGTPIDN---LSKFDSARERILFAEALGAVKESKVFFGTRAGYIKQVDGAEF 641

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                S  IA KL   DE+++V T      +++ TK G  +R P+S I     + +VGV 
Sbjct: 642 DVSRYSS-IASKLGQGDELVAVGTIRGAETLVMETKSGYFLRIPVSDIPEKK-KAAVGVI 699

Query: 726 GISLAKGDQVISMAIVLHAD 745
           GI L + D+V  M ++   +
Sbjct: 700 GIKLGRADRVSQMYLLTDQE 719



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 17/190 (8%)

Query: 724 VRGISL-----------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           V+ I L            +   VI  + +            ++  +         D    
Sbjct: 537 VKAIDLSVYDRNQEAADKENKYVIHCSNLDRLAVFSSTGQLHLIKVLDMPGGKFRDKGTP 596

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               +                 +KE  +   +  G+ K+    +F +S        +   
Sbjct: 597 IDNLSKFDSARERILFAEALGAVKESKVFFGTRAGYIKQVDGAEFDVSR-----YSSIA- 650

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           SK+ +   LVAV  +   + +++ +  G  +R+PV++I    +A  GV+     + +RV 
Sbjct: 651 SKLGQGDELVAVGTIRGAETLVMETKSGYFLRIPVSDIPEKKKAAVGVIGIKLGRADRVS 710

Query: 893 SVERIRESEI 902
            +  + + E 
Sbjct: 711 QMYLLTDQEG 720



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 89/253 (35%), Gaps = 27/253 (10%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       VV   + G V+   LS + +   +           E   V  C+  +
Sbjct: 515 AVIEEKPIEEQEMVVLMDRFGYVKAIDLSVYDRNQEAA--------DKENKYVIHCSNLD 566

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            + + +  GQ     +  +     R+  G    +L+K D      +   A     E   +
Sbjct: 567 RLAVFSSTGQLHLIKVLDMPGGKFRD-KGTPIDNLSKFDSARERILFAEALGAVKESKVF 625

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               +   + + G   +++   + +S  G   E          + ++  ++ G+  R   
Sbjct: 626 FGTRAGYIKQVDGAEFDVSRYSSIASKLGQGDELVAVGTIRGAETLVMETKSGYFLRIPV 685

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK-GTL-----IRVPVN 868
            D     ++  G+    + + + +             Q+ L++D+ G L      +V +N
Sbjct: 686 SDIPEKKKAAVGVIGIKLGRADRV------------SQMYLLTDQEGGLTSLHNKKVVLN 733

Query: 869 EIRIASRATKGVV 881
            + I SRATKGV 
Sbjct: 734 RLHIGSRATKGVK 746


>gi|259503380|ref|ZP_05746282.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
 gi|259168676|gb|EEW53171.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus antri DSM
           16041]
          Length = 817

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 278/735 (37%), Positives = 420/735 (57%), Gaps = 44/735 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+   M   +  Y+ ++I  RA+PD+RDGLKPV RRIL+ M + G  ++K + K A+  
Sbjct: 1   MSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSAKSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G VMG +HPHG+++IY+AL R++QDW LR  L+E  GN GS+DGDP AA RYTE RL K 
Sbjct: 61  GNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARLSKI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPTHNL EV
Sbjct: 121 AGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  + +I +PD  L+ LME I GPDFPTG ++ G  GIK AY TGRG IV+R  + IE 
Sbjct: 181 LDALIYLIKHPDASLEKLMEFIPGPDFPTGGIVQGVEGIKKAYQTGRGRIVVRAKTEIET 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G R+QI VTEIPY+VNKA ++++I +L   K++  I + RDE+DR G R+ IELKR A
Sbjct: 241 LRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIELKRNA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A  ILN L + T LQ  ++ NMVA++  +P R  L  IL +++AF++EVV RRT Y L+
Sbjct: 301 NAAGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLAFQKEVVRRRTSYNLD 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA+ R H++ GL  A++ LD+V++ IR S N + A++ L+ +                  
Sbjct: 361 KAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQ------------------ 402

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      S+VQ  AI+ L+L RLT     ++ +E   L   I E   ILS    L 
Sbjct: 403 --------YAFSDVQAEAIVTLQLYRLTNTDVTELEDEHQHLNDLIDEYQLILSDDEELS 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            ++++E+ +VK E   PRRT+I + +   +++ +  +  ED+VV VSH GY+KR  +  +
Sbjct: 455 KVVRREMQAVKKEFGNPRRTQIEDQVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSF 514

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +A            +R++D+   +   +T   +  F++ G V    V  L     +  G+
Sbjct: 515 KASSLDED-----GLREDDYPLLVTQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGE 569

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQINRSGK 673
            +   + L   E I   M F + +        +F T  G V+++   D+    +      
Sbjct: 570 HISQTIGLTDNEEIIKAMVFDKLDL---PGSFIFGTSDGQVKQSAYKDYQPGSRYKSHAS 626

Query: 674 IAMKLDSRD-EILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +A+KL S D  ++SV+     ++   +L  ++ G  VRF ++ +    G  + GVR I+L
Sbjct: 627 MAVKLKSADATVVSVDYYEPTDENRSLLAISREGYAVRFDVADV-PVTGLRTAGVRAINL 685

Query: 730 AKGDQVISMAIVLHA 744
              D +  + +V   
Sbjct: 686 KDDDTLADLVLVKDG 700



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 83/257 (32%), Gaps = 59/257 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           VV  +  G ++R+ +  F   +        L   D  L V        + + T  G  + 
Sbjct: 497 VVLVSHAGYIKRSSIRSFKASSLDE---DGLREDDYPLLVTQTNTLAHLFMFTNRGHVIY 553

Query: 708 FPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            P+  +     +++     + I L   +++I   +                         
Sbjct: 554 RPVHELADVRWKDTGEHISQTIGLTDNEEIIKAMV------------------------- 588

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                     +L L   FI   +  G  K+++  D++  +R  K
Sbjct: 589 ------------------------FDKLDLPGSFI-FGTSDGQVKQSAYKDYQPGSRY-K 622

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              +  V   +    +V+V      D+   ++ +S +G  +R  V ++ +    T GV  
Sbjct: 623 SHASMAVKLKSADATVVSVDYYEPTDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRA 682

Query: 883 FSTAKDERVVSVERIRE 899
            +   D+ +  +  +++
Sbjct: 683 INLKDDDTLADLVLVKD 699



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 90/275 (32%), Gaps = 15/275 (5%)

Query: 647 YVVFATKHGNVRRNKLSDFIQIN-----RSGKIAMKLDSRDEILSVETCTQEN---DILL 698
           ++   T  G+V    + +   +            + L   +EI+      + +     + 
Sbjct: 541 HLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLTDNEEIIKAMVFDKLDLPGSFIF 600

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHADADYDERICYMKH 757
            T  GQ  +      +  +   S     + L   D  V+S+      D +        + 
Sbjct: 601 GTSDGQVKQSAYKDYQPGSRYKSHASMAVKLKSADATVVSVDYYEPTDENRSLLAISREG 660

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            + +  +       + +    +    +        L    Q + +++++G  K     + 
Sbjct: 661 YAVRFDVADVPVTGLRTAGVRAINLKDDDTLADLVLVKDGQRVASITQRGAFKEMPIDEI 720

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND---QIILVSDKGTLIRVPVNEIRIAS 874
            +  R+ +G       K +     +A F   D D      +++D+     V V +  + S
Sbjct: 721 AVGARARRGELVLHRLKSHPHK--IADFLAYDADFAGNFEIITDRPQFQEVAVGDHHLGS 778

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
             + G  +  T      V + RI+E+ I+ E E  
Sbjct: 779 IKSNGTFVIDTETQGTPVKI-RIKETNILHEGEQE 812


>gi|294790962|ref|ZP_06756120.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
 gi|294458859|gb|EFG27212.1| DNA gyrase, A subunit [Scardovia inopinata F0304]
          Length = 891

 Score =  619 bits (1597), Expect = e-175,   Method: Composition-based stats.
 Identities = 259/886 (29%), Positives = 410/886 (46%), Gaps = 106/886 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M +MG+  
Sbjct: 12  DPRTIKQNIVDTPLGEEMSTSFLAYAYSVIYARALPDTRDGLKPVQRRIIYQMGEMGLSP 71

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 72  DKSYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  + + +G++TVDF PNYD   QEP VL +  PN+LVNG  GIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNESIGEETVDFTPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +P+   + LM  + GPD P G +I+GR GIK AY +GRGS
Sbjct: 191 TNMVTHNLGEVVSAAKYLMAHPNASTEDLMTYLPGPDLPGGGIIMGREGIKEAYTSGRGS 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
            + R  +HIE  +  ++ IVVTE+P+ V    +LE+I+E ++ K++  I+   D +D   
Sbjct: 251 FLTRAATHIENVTARKKAIVVTELPFMVGPEKVLERISEGIKNKKLEGISGAIDLTDRHN 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G     +L QL++YT L+  F++N VAL   +P    +  +L  ++  R 
Sbjct: 311 GTRLVIEIKTGFDPRAVLGQLFKYTPLEDSFTINNVALVNGRPHTMGIKELLSVWIEHRR 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S + ++A+  LM        
Sbjct: 371 TVVTRRSEYRKRKAEERLHLVDGLLLALIDIDEVIDVIRTSDDADSAKTRLMA------- 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++ +E + L   I +
Sbjct: 424 -------------------VFDLDQIQAQYILDLRLRRLTKMSRIELESERDDLQRLIAQ 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI------------- 533
              ILSS       + + +     E DTPRRT +++                        
Sbjct: 465 LDQILSSTQVRDMEVIKSMDRAVQEWDTPRRTVLLDQDESGSYVAVPTARSGSGKSESVQ 524

Query: 534 ----------------------------------VREDMVVTVSHLGYVKRV-------P 552
                                               +   + ++  G + R         
Sbjct: 525 AADLAGSSSKNAASSLSVQTSALASAQAAGSLELEDKPCSIILTADGLIARSSPAAKDLW 584

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
            S   A+ RG   +   ++R     +   I S    VL  S+       +      G+ +
Sbjct: 585 ESRTEARPRGSHDQIVAIIRSTTRSSYGIITSHGRMVLAHSADLPNLVLQENLTMEGAVK 644

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+        + +  +     +      +      +   T+ G V+R        +    
Sbjct: 645 AQELLHNTQSTESSDDEEVITILPLPSPNDTKIKLLAIGTRKGIVKRWNGDSPTTM--DS 702

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              + L   D ++        + ++  +     + +  SA+R   GRN+ G+ GI LA  
Sbjct: 703 WSIIDLKDDDRVVFAAPADDTDRLVFISSDSSLLTYEASAVRP-QGRNAAGMGGIRLAPH 761

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
            QV++  ++      + +     +   +     SG                         
Sbjct: 762 CQVLAFNVIPAGKIAWIDSSSDGQEAKSHSLQASG---------------------AVVV 800

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
               +   L  +E G  K T    F    R+ KG+R+    K    
Sbjct: 801 TIAGDSHALEGTENGSAKVTPLEKFPSKGRNTKGVRSQRFHKSENT 846



 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M +   AD         +    A +        + T   +D  V   +      + K+K 
Sbjct: 620 MVLAHSADLPNLVLQENLTMEGAVKAQELLHNTQSTESSDDEEVITILPLPSPNDTKIK- 678

Query: 798 QFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
             +L + + KG  KR +      +      + +  +  + +   +V   P +D D+++ +
Sbjct: 679 --LLAIGTRKGIVKRWNGDS-PTT------MDSWSIIDLKDDDRVVFAAPADDTDRLVFI 729

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           S   +L+    + +R   R   G+     A   +V++   I 
Sbjct: 730 SSDSSLLTYEASAVRPQGRNAAGMGGIRLAPHCQVLAFNVIP 771


>gi|319401356|gb|EFV89567.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis FRI909]
          Length = 800

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 277/887 (31%), Positives = 463/887 (52%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL+ +K +    R + I      + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELIEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKHEAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E +   +    ++   +  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEV---VNVYNEKDFKHEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+   D++++V     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LINMKVKDNDKLINVVRLETDQLITVLTHKGMSLTYSTNEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K      +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKKPH-RIVAGAVVKENHT 755

Query: 853 IILVSDK-----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +     G +     +++ ++ + T G  I  T     V S+
Sbjct: 756 KYVVFSQHHEEYGKI-----DDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 18/226 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++    V
Sbjct: 493 DKEVMVP---SEEVILSLTQHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLKHEAV 543

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    E 
Sbjct: 544 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFKHEA 603

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LVS 857
           F +  ++ G  K++S+  F+ + R  K +    V   +++  +V +    + DQ+I +++
Sbjct: 604 FYIMATKNGMIKKSSASQFKTT-RFNKPLINMKVKDNDKLINVVRL----ETDQLITVLT 658

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            KG  +    NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 659 HKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 117/273 (42%), Gaps = 15/273 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  E    +
Sbjct: 490 IKIDKEVMVPSEEVILSLTQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHEAVNTQ 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+ +  P+  +        +G    + + + + ++V+   +    D  ++ 
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIR-WKELGQHISQIVPIDEDEEVV--NVYNEKDFKHEA 603

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFG 809
                      ++  +   +     K   +++   +++    ++L+   ++TV + KG  
Sbjct: 604 FYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHKGMS 663

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S+ +   +     G+++ ++        +V    VND+D II+V+ +G + R+  N 
Sbjct: 664 LTYSTNELSDTGLRAAGVKSINLKD---EDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV 720

Query: 870 IRIASRATKGVVIFS-TAKD-ERVVSVERIRES 900
           ++ A RA +G+ +     K   R+V+   ++E+
Sbjct: 721 LQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753


>gi|73662712|ref|YP_301493.1| DNA topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495227|dbj|BAE18548.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 800

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 270/884 (30%), Positives = 453/884 (51%), Gaps = 92/884 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++Q W L  +LIE QGN GS+D DP AA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SRISEELLRDINKETVPFMPNYDDTTLEPMVLPARLPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ ++GPDFPTG +I G  GIK AY TG+G I++R    
Sbjct: 185 GEVIQATLKFIDNPDITVAQLMKYVKGPDFPTGGIIQGIDGIKKAYETGKGKIIVRSKVE 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R+Q++VTE+PY+VNK+++++K+ EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 DEELRNGRKQLIVTEVPYEVNKSSLVKKMDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ +LN LY+ T LQ  ++ NMVA++  +P    +   + +++  + +VV +RT+Y
Sbjct: 305 KDVNSEAVLNYLYKNTDLQVAYNFNMVAISEGRPVLMGIRQFIDSYLNHQIDVVTKRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L+ A  R H++ GL  A++ LDEV+++IR S N + A+  L+                 
Sbjct: 365 ELDHAESRMHIVEGLMKALSILDEVIKLIRASKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT      ++ E + L   I    +IL   S
Sbjct: 410 -----------FDFTEAQAEAIVTLQLYRLTNTDIVQLQEEHDELKSLIGRLKNILDDHS 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK+EL  +++     R + I      + ++ E  I  E ++++V+  GY+KR  L
Sbjct: 459 ALLNVIKEELTEIRNRFKQGRLSSIEAEISEIKIDKEVMIPSETVIMSVTKHGYIKRTSL 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y A        + + ++D D +     V+T  + L F++ G      V +L     + 
Sbjct: 519 RSYNASG-----VNEIGVKDGDVLMKHQEVNTLDTALVFTNKGRYLFIPVHKLAEIKWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ L++GE I       + +    + + + AT+HG ++R+ +S F     +  
Sbjct: 574 LGQHVSQIVPLDEGEFIIDAYCESDFK---PDAFYILATRHGMIKRSNVSMFKTSRFNKP 630

Query: 674 I-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + AMK+   DEI++V        I + T  G  + +    +    G  + GV+ I+L   
Sbjct: 631 LVAMKVKDDDEIINVMRIDSTQLITVITNKGMSLTYSSDEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D  +   ++   ++                                              
Sbjct: 690 DFAVLTQVISANNS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  IL  +++G  KR      + + R+ +GI      K +    +VA   +     
Sbjct: 704 -------ILMATQRGSLKRIGFKVLQTAKRAQRGITLLKELKKSPH-RIVAADVIQPEHT 755

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
              +          + +I ++ + T G  I  T++   ++ +E 
Sbjct: 756 TYTIYSDKQQESGAIKDIHLSEQYTNGSFIVDTSEFGEIIDLEV 799


>gi|156888553|gb|ABU96681.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888555|gb|ABU96682.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/885 (31%), Positives = 438/885 (49%), Gaps = 80/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    +  T++G  +R +  +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   T     D+LL T  G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDAKDRVVTLTPIVMEDLLLVTYHGYALRFSSQDV-PIQGLKSSGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+++S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNEDKLVSTFSVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEV 813



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 79/259 (30%), Gaps = 38/259 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S   A       EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNVMKRELREVKKKFANPRLSELQAESQI--IEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHADADYDERICYMKHMSA 760
               F  S++     R             D++I         H            + +  
Sbjct: 516 SPRSFNASSLEEVGKR-----------DDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TSS 814
              L   D  E  S    +                 +   L V++ GF KR      T  
Sbjct: 565 LTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPW 624

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             ++  +   K ++       +    +V + P+   D ++LV+  G  +R    ++ I  
Sbjct: 625 RTYKSKS--TKYVKL-----KDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDVPIQG 676

Query: 875 RATKGVVIFSTAKDERVVS 893
             + GV   +   ++++VS
Sbjct: 677 LKSSGVKGINLKNEDKLVS 695


>gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
 gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1]
          Length = 819

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 284/911 (31%), Positives = 418/911 (45%), Gaps = 116/911 (12%)

Query: 1   MTEHIIS-SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M        D    + I  + +T EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ 
Sbjct: 1   MATPTKPTPDSPAGERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+   K +VK +R+ G+VMGK HPHG+A+IYDA+ R+ Q + LR+ LI+G GNFGS
Sbjct: 61  MSEMGLRPEKGHVKSSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RLQ +A  + DDL +D VDF PNYD S  +P VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVV     ++ +PD  L+ LM+ + GPD PTG  I+G  G+K+
Sbjct: 180 SGIAVGMATNMAPHNLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKIIGLAGVKD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYA GRG+   R    +E  +  +  +VVTE+PY V    ++EKI + V  K+IV I+D+
Sbjct: 240 AYANGRGAFKTRAKVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISDV 299

Query: 300 RDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +D   G R+VI +K G S D +L QLYR T L+  FS+N V L   +P+   L  +L
Sbjct: 300 TDLTDRNHGLRLVIGIKTGFSPDAVLEQLYRLTPLEDNFSINAVTLVDGRPQTLGLKALL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + F+  R +VV RR+ + L K R+R H++ GL +A+ ++DEV+++IR S + + AR  L 
Sbjct: 360 EVFLKHRLQVVTRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTRL- 418

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LSE+Q   ILELRL RLT   R ++  E +
Sbjct: 419 -------------------------RDVFDLSELQAEYILELRLRRLTKFSRIELEAEAD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED------- 531
            L  EI     +LS  + +  ++  EL  V D+  TPRRT + E    +           
Sbjct: 454 KLRAEIARLEALLSDDTLIRALVSDELEQVADKFGTPRRTLLTEAPASIATTSRSAARKN 513

Query: 532 ----CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
                I  +  VV +S  G V RV      A   G    +       D +      ++ T
Sbjct: 514 LPVLEIADDPCVVLLSTTGRVIRV------AVAEGDSLLAAPRRSKHDAIRSRVTTTSRT 567

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +   ++ G + +     LP     +        ++                 S  ++  
Sbjct: 568 EIGAITNRGRLIRFTAMDLPSVPSSSVQLDAGAKINEYLAIESKER--VLALVSLDSDQP 625

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +   T+ G V+R     +        IA  L   DE++       ++++   T   Q + 
Sbjct: 626 IALGTRLGTVKRVIPGGWPSKPEFEVIA--LKDGDELVGAAHSPDDSELTFITSNTQLLH 683

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F  SA+R   G  + G+ G+ +  G  VI    +    A     +       A       
Sbjct: 684 FSASAVRP-QGLTAGGMAGVRVDAGASVIFFDAIDAGSAPIAVTVSGSSATIAG------ 736

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                               ++ G  K ++   F    R   G+
Sbjct: 737 ------------------------------------TDPGRAKVSAFEQFPAKGRGTGGV 760

Query: 828 RATDVSKINEIGAL--VA---VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           RA  + K  ++  L  V       V  +            IR    E+    R   G  +
Sbjct: 761 RAHSLLKGEDVLTLAWVGTAPATAVAPD----------GAIRQLPTELSK--RDASGAQL 808

Query: 883 FSTAKDERVVS 893
                 + V+ 
Sbjct: 809 ------DSVIG 813



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 84/274 (30%), Gaps = 37/274 (13%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++  VV  +  G V R      +    S   A +    D I S  T T   +I   T  G
Sbjct: 521 DDPCVVLLSTTGRVIRVA----VAEGDSLLAAPRRSKHDAIRSRVTTTSRTEIGAITNRG 576

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADADYDERICYMKH 757
           + +RF    +      +     G  + +       ++V+++  +                
Sbjct: 577 RLIRFTAMDLPSVPSSSVQLDAGAKINEYLAIESKERVLALVSLDSDQPIALGTRLGTVK 636

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT----- 812
                   S    E+ +LK+   + G        EL         ++       T     
Sbjct: 637 RVIPGGWPSKPEFEVIALKDGDELVGAAHSPDDSELT-------FITSN-----TQLLHF 684

Query: 813 SSYDFRISNR--SGK-GIRA------TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           S+   R       G  G+R            I+   A +AV  V+ +   I  +D G   
Sbjct: 685 SASAVRPQGLTAGGMAGVRVDAGASVIFFDAIDAGSAPIAVT-VSGSSATIAGTDPGRAK 743

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                +     R T GV   S  K E V+++  +
Sbjct: 744 VSAFEQFPAKGRGTGGVRAHSLLKGEDVLTLAWV 777


>gi|156888547|gb|ABU96678.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888549|gb|ABU96679.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|156888551|gb|ABU96680.1| topoisomerase IV subunit [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 813

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/885 (31%), Positives = 438/885 (49%), Gaps = 80/885 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+  
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +     +++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    +  L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    E     + + +  +S++    +  T++G  +R +  +       
Sbjct: 571 KDIGEHLSQTISNFATEEE---ILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   T     D+LL T  G  +RF    +    G  S GV+GI+
Sbjct: 628 KSKSTKYVKLKDAKDRVVTLTPIVMEDLLLVTYHGYALRFSSQDV-PIQGLKSSGVKGIN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+++S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNEDKLVSAFSVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKAKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEG 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V
Sbjct: 769 ETNQQMLEVISKTGQTYEITLETLSLSERTSNGSFISDTISDQEV 813



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 79/260 (30%), Gaps = 38/260 (14%)

Query: 652 TKHGNVRRNKLS---DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR- 707
           T +  ++R        F     S   A       EI +     +E   +  T+ G   R 
Sbjct: 458 TMYNVMKRELREVKKKFANPRLSELQAESQI--IEIDTASLIAEEETFVSVTRGGYLKRT 515

Query: 708 ----FPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHADADYDERICYMKHMSA 760
               F  S++     R             D++I         H            + +  
Sbjct: 516 SPRSFNASSLEEVGKR-----------DDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHE 564

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TSS 814
              L   D  E  S    +                 +   L V++ GF KR      T  
Sbjct: 565 LTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPW 624

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
             ++  +   K ++       +    +V + P+   D ++LV+  G  +R    ++ I  
Sbjct: 625 RTYKSKS--TKYVKL-----KDAKDRVVTLTPIVMED-LLLVTYHGYALRFSSQDVPIQG 676

Query: 875 RATKGVVIFSTAKDERVVSV 894
             + GV   +   ++++VS 
Sbjct: 677 LKSSGVKGINLKNEDKLVSA 696


>gi|322411913|gb|EFY02821.1| DNA topoisomerase IV subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 819

 Score =  619 bits (1596), Expect = e-175,   Method: Composition-based stats.
 Identities = 274/888 (30%), Positives = 441/888 (49%), Gaps = 80/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  
Sbjct: 182 NLSEVIDAVVYMIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE+  G ++QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IE
Sbjct: 242 TEIEELKGGKQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+
Sbjct: 302 LKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   ++ LDE++ +IR S N   A+  L                
Sbjct: 362 KFDKAKAEKRLHIVEGLIRVLSILDEIIALIRASDNKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      ++NE N L   I     I+S 
Sbjct: 406 ----------KVSYDFSEEQAEAIVTLQLYRLTNTDIITLQNEENDLRELITTLSAIVSD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            + +  ++K+EL  VK +   PR + +      ++++    I  E+  V+V+  GY+KR 
Sbjct: 456 EATMYNVMKRELREVKKKFANPRLSELQAESQTIEIDIASLIAEEETFVSVTRGGYLKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          V  RD+D +  +    T   +L F++LG V    ++ L     
Sbjct: 516 SPRSFNASSLE-----EVGKRDDDDLIFVKQAKTTEHLLLFTTLGNVIYRPIYELTDLRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   +S    +     + + +  +S++    +  T++G  +R +  +       
Sbjct: 571 KDIGEHLSQTISNFATDEE---ILYADIVTSFDQGLYLAVTQNGFTKRFERQELTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  +KL    + +   T     D+LL T  G  +RF    +    G  S GV+G +
Sbjct: 628 KSKSTKYVKLKDAKDRVVTLTPIVMEDLLLVTYYGYALRFSSQDV-PIQGLKSSGVKGTN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D+++S   V         +   +K M+      +        +  +   + +    
Sbjct: 687 LKNEDKLVSAFSVTSNSFFVLTQRGALKRMAVDDIPQTSRANRGLLVLRELKAKPHRVFL 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
                                  TS+  F                       L    P  
Sbjct: 747 AGGVQSD----------------TSAEQF----------------------DLFTDIPEE 768

Query: 849 DNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + +Q +L  +S  G    + +  + ++ R + G  I  T  D+ V++ 
Sbjct: 769 ETNQQMLEVISKTGQTYEIALETLSLSERTSNGSFISDTISDQEVLAA 816


>gi|238855704|ref|ZP_04646001.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|260664459|ref|ZP_05865311.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282932218|ref|ZP_06337665.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|313472143|ref|ZP_07812635.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|238831689|gb|EEQ24029.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 269-3]
 gi|239529512|gb|EEQ68513.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 1153]
 gi|260561524|gb|EEX27496.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281303668|gb|EFA95823.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
          Length = 826

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 274/888 (30%), Positives = 429/888 (48%), Gaps = 94/888 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++ + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K 
Sbjct: 3   QKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL D+ KDTV+   N+D +  EP VL A++PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  + ++ +PD  L  LM+ ++GPDFPTGA++LG  GIK AY TGRG I +
Sbjct: 183 PPHNLAEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVLGDKGIKEAYETGRGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+     R+QIVVTEIP+ VNKA +++KI E+   K I  I+++RDE+DR G  +
Sbjct: 243 RSKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+GA +  ILN L++ T LQ  +S NMVA++   P +  L  IL +++   E V+ 
Sbjct: 303 VIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDEAVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT+Y L KA+ R  ++ GL  A+  LD+V++ IR S N   A+  ++++          
Sbjct: 363 KRTQYDLKKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIEK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ L+L RLT    + ++ E + L  +I     +
Sbjct: 413 ----------------FSFTPRQAEAIVSLQLYRLTNTDVNALQAEKSDLEEKIANYNLL 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           L+ R  L   I +EL +VK E  + RRT+I      ++++++  +  ED+ V VS  GY+
Sbjct: 457 LTDRKVLEKQIIKELNAVKKEFGSDRRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  +++      G         +             +  F++ G V    V  L  
Sbjct: 517 KRSSLRSFQSTDDSENGLPDFDKVVFEKTMSTLTN-----LYLFTNKGNVIFRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L+  E+I   +   E       L  V AT  G +++  L+D    
Sbjct: 572 AKWKEPGQHLSQELGLDTDEQI---VSVFELAKLDEKLNFVLATNDGYIKQLALADIQPT 628

Query: 669 NR---SGKIAMKLDSR-DEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   IAMKL      ++ V       + +I L T     VR+ IS I   +G  + 
Sbjct: 629 RTYKSRAMIAMKLKQDTSRVIHVEGVVPDTKKEITLFTNQAYAVRYDISEI-PTSGARAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D V+    V     +  +                                
Sbjct: 688 GVKSVNLKDDDYVVDYVTVDPKYLNLMKLG------------------------------ 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                               ++++G  K          +R+ +G+      K N    + 
Sbjct: 718 -------------------IITQRGAFKEFKYELINKVSRAKRGVLVLRELKKNPH-RIS 757

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDE 889
            V     N ++I+ +     + +  N+  +  R + G  +       E
Sbjct: 758 GVALFGQNHELIIETSSARTMTIKTNDFPLGDRYSNGSFVIDPVGDGE 805



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHA 744
               +E+  +L ++ G   R   S++R F   +        L   D+V+   +M+ + + 
Sbjct: 499 ALVAEEDVRVLVSRDGYLKR---SSLRSFQSTDDSEN---GLPDFDKVVFEKTMSTLTNL 552

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++     + +         +  +  S +     +  I          ++   +  +
Sbjct: 553 YLFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIVSVFELAKLDEKLNFVLAT 612

Query: 805 EKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVSD 858
             G+ K+ +  D + +    +R+   + A  + +  +   ++ V  V  +   +I L ++
Sbjct: 613 NDGYIKQLALADIQPTRTYKSRA---MIAMKLKQ--DTSRVIHVEGVVPDTKKEITLFTN 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           +   +R  ++EI  +     GV   +   D+ VV    +  
Sbjct: 668 QAYAVRYDISEIPTSGARAAGVKSVNLKDDDYVVDYVTVDP 708


>gi|21904354|gb|AAM79232.1| putative DNA topoisomerase IV subunit C [Streptococcus pyogenes
           MGAS315]
          Length = 807

 Score =  619 bits (1595), Expect = e-175,   Method: Composition-based stats.
 Identities = 276/879 (31%), Positives = 435/879 (49%), Gaps = 81/879 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   L+ LME + GPDFPTG +I G   IK AY TG+G +V+R  + IE+  G ++
Sbjct: 181 MIDHPKASLEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRTEIEELKGGKQ 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+VTEIPY+VNKA +++KI ++    ++  I ++RDESDR G R+ IELK+ A +  IL
Sbjct: 241 QIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAIELKKEADSQTIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L +YT LQ  ++ NMVA++ + P +  L  IL ++++ R+++++ R+K+   KA  R 
Sbjct: 301 NYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYISHRKDIIIERSKFDKAKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDE++ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVLSILDEIIALIRSSDNKADAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   SE Q  AI+ L+L RLT      ++NE N L   I     I+   + +  ++K+E
Sbjct: 395 VSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLSAIIGDEATMYNVMKRE 454

Query: 505 LLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  VK +   PR + +     +++++    I  E+  V+V+  GY+KR     + A    
Sbjct: 455 LREVKKKFANPRLSELQAESQIIEIDTASLIAEEETFVSVTRGGYLKRTSPRSFNASSLE 514

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 V  RD+D +  +    T   +L F++LG V    +  L     +  G+ L   +
Sbjct: 515 -----EVGKRDDDELIFVKQAKTTEHLLLFTTLGNVIYRPIHELTDLRWKDIGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR---SGKIAMKLD 679
           S    E     + + +  +S++    V  T++G ++R    +              +KL 
Sbjct: 570 SNFATEEE---ILYADIVTSFDQGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLK 626

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              + +   +     D+LL TK G  +RF    +    G  S GV+GI+L   D + S  
Sbjct: 627 DDKDRVVTLSPVIMEDLLLVTKNGYALRFSSQEV-PIQGLKSAGVKGINLKNDDSLASAF 685

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            V         +   +K M+      +        +  +   + +               
Sbjct: 686 AVTSNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFLAGGVQSD---- 741

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL--VS 857
                       TS+  F                       L    P  + +Q +L  +S
Sbjct: 742 ------------TSAEQF----------------------DLFTDIPEEETNQQMLEVIS 767

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G    + +  + ++ R + G  I  T  D+ V+ V R
Sbjct: 768 KTGQTYEIALETLSLSERTSNGSFISDTISDQEVL-VAR 805


>gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus]
          Length = 545

 Score =  618 bits (1594), Expect = e-174,   Method: Composition-based stats.
 Identities = 281/570 (49%), Positives = 392/570 (68%), Gaps = 27/570 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K +
Sbjct: 2   QDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L DL K+TVDF+ NYDGS +EP+VL +R PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL E +D    ++DNP++    LME++ GPDFPTG +++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVMGKSGIHRAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  L +EKRI  I  +RDES R+G R V
Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE++R ASA+VILN L++ T LQ+ FS NM+A+    P+  +L  IL  ++A ++EVVVR
Sbjct: 302 IEVRRDASANVILNNLFKLTQLQTNFSFNMLAIEKGVPKILSLRQILADYIAHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++  +KA  RAH+L GL IA+ +LDEV+ IIR S     A+ ELM R           
Sbjct: 362 RTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMAR----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            L+E Q++AIL++RL RLTGL RD I+NE + L   I +  DIL
Sbjct: 411 ---------------FELTERQSQAILDMRLRRLTGLERDKIQNEYDDLLALITDLADIL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           +   R++ IIK+EL   K +    RRT ++   ++ +EDED I  ED+V+T+S+ GY+KR
Sbjct: 456 AKPERVIAIIKEELDESKRKFADARRTELMVGEVVSLEDEDLIEEEDVVITLSNKGYIKR 515

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           +    +R+Q+RGG+G  G  + D+DFV D+
Sbjct: 516 LAQDEFRSQKRGGRGVQGTGVNDDDFVRDI 545



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD  DE++++   +Q +      +     RF ++       R S  +  + L      
Sbjct: 382 IALDHLDEVITIIRNSQTD---AEAQAELMARFELTE------RQSQAILDMRLRRLTGL 432

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + D++ +    ++       D      + ++  +  +     +    +    + G +   
Sbjct: 433 ERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADARRTELMVGEVVSL 492

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             ++L  +E  ++T+S KG+ KR +  +FR   R G+G++ T V+  +
Sbjct: 493 EDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQGTGVNDDD 540


>gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
 gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989]
          Length = 827

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 267/802 (33%), Positives = 443/802 (55%), Gaps = 40/802 (4%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           ++E +  +   S+ D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  +N
Sbjct: 3   EKEVKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYN 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +   LI+ QGN GS+D DP AA 
Sbjct: 63  KPYHKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + + FLL D+ KDTV++ PN+     EP VL AR+PN+LVNG  GIA G AT
Sbjct: 123 RYTEARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNL EV+   +  I +PD  L+ LM+ ++GPDFPTG +++G  GIK A+ TGRG +
Sbjct: 183 NIPPHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVMGLDGIKQAFQTGRGRV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +IR    +       +QI++ EIPY+V K+ +++KI E+   K+I  I D+RDESDR G 
Sbjct: 243 LIRSKVEVVPLRT-IKQIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGL 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V++LK+ ++ + ILN LY+ T LQ  ++ N++A+    P + +L  +L AF++ RE+V
Sbjct: 302 RIVVDLKKDSNDEQILNYLYKNTDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHREDV 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR+K+ L   ++RAH+L GL  AV+ +DE++ IIR S +   A++ L++R        
Sbjct: 362 VIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIER-------- 413

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                +E Q  AI+ +RL RLT     +++ E   L  +I E  
Sbjct: 414 ------------------FDFTEKQAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            I+  +S L  ++ +EL  V  E +TPR ++IV     + ++++  I +E+ ++TV+  G
Sbjct: 456 KIIRDKSELHKVMVEELEKVNAEFNTPRLSKIVHEVKEIVIDEKAMISKEECMITVTRDG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+KRV +  + A        S    +D D +       T  +++FF++ G      V+++
Sbjct: 516 YIKRVSMRSFNASSD-----SMTQRKDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQI 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +  G  + N + ++  E+I         ++    ++VV A++HG ++R +L +F 
Sbjct: 571 EEAKWKDLGGHISNYIKMDSSEKIIAAYVLDAFKT---GVHVVSASRHGMIKRTELKEFE 627

Query: 667 QINRSG-KIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
               +     MK+   DE++SV      ++ ++L ++ G  + +P+  I       S GV
Sbjct: 628 VSRSNKTMTCMKIGGMDEMISVSLSYKPDDQVILVSEQGYGLMYPVEQI-PLVSNKSKGV 686

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++LAK D V S+ I  + D         +     ++  I+         +    V+ N
Sbjct: 687 KAMNLAKDDCVASICIRKNRDEQVLISTTTLSLKRMKQLEIAPLNRPAKGNRICKLVKSN 746

Query: 785 ISEERCQELKLKEQFILTVSEK 806
            +     ++      I   +++
Sbjct: 747 PNVIFNLQMVDLNTKIEIYTDE 768



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/503 (13%), Positives = 150/503 (29%), Gaps = 26/503 (5%)

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
               ++ I     P    +  + +  +   +   ID I D        G   + +++  +
Sbjct: 252 PLRTIKQIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGLRIVVDLKKDS 311

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
             E  L  L      D++   N   I I     +  S + +L         V       R
Sbjct: 312 NDEQILNYLYKN--TDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHREDVVI-----R 364

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           R++                   V  +  + ++ R       A++   +       + E  
Sbjct: 365 RSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIERFDFTEKQAEAI 424

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI------------NILSL 624
           V       T+T V    +     +  +  L            +            N   L
Sbjct: 425 VVMRLYRLTNTDVKELKAEFKQLQCDIAELEKIIRDKSELHKVMVEELEKVNAEFNTPRL 484

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
           ++       +   E         ++  T+ G ++R  +  F   + S          D +
Sbjct: 485 SKIVHEVKEIVIDEKAMISKEECMITVTRDGYIKRVSMRSFNASSDSMTQR---KDTDSL 541

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG--ISLAKGDQVISMAIVL 742
           +          ++  T  G     P+  I     ++  G     I +   +++I+  ++ 
Sbjct: 542 VCYGASHTLQTLIFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEKIIAAYVLD 601

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          M  +  L   +            + G             +  ++ 
Sbjct: 602 AFKTGVHVVSASRHGMIKRTELKEFEVSRSNKTMTCMKIGGMDEMISVSLSYKPDDQVIL 661

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           VSE+G+G         + +   KG++A +++K + + ++      N ++Q+++ +   +L
Sbjct: 662 VSEQGYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASI--CIRKNRDEQVLISTTTLSL 719

Query: 863 IRVPVNEIRIASRATKGVVIFST 885
            R+   EI   +R  KG  I   
Sbjct: 720 KRMKQLEIAPLNRPAKGNRICKL 742


>gi|325962999|ref|YP_004240905.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469086|gb|ADX72771.1| DNA topoisomerase IV subunit A [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 835

 Score =  618 bits (1593), Expect = e-174,   Method: Composition-based stats.
 Identities = 280/857 (32%), Positives = 413/857 (48%), Gaps = 101/857 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +    + +    + I  + +T EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 6   SSAPPADNTPYTENIVDIDVTSEMEGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMS 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            MG+  ++ +VK AR+ GEVMGK HPHG+ AIYDA+ RMAQD+SLRL LI+G GNFGS+D
Sbjct: 66  DMGLRPDRGHVKSARVVGEVMGKLHPHGDTAIYDAMVRMAQDFSLRLPLIDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  L D L +D VDF PNYD    +P VL A +PN+LVNG  G
Sbjct: 126 -DGPAAPRYTEARLAAAALTLTDHLDEDVVDFVPNYDNQLTQPDVLPAAFPNLLVNGATG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EV+     +I NPD  LD LM  + GPD P+G  I+G  GI++AY
Sbjct: 185 IAVGMATNMAPHNLVEVISAARHLIANPDATLDDLMRFVPGPDLPSGGRIVGLDGIRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           ATGRGS   R    +E+ S  R  +VVTE+PY V    ++EKI + V  K++  I+D+ D
Sbjct: 245 ATGRGSFKTRAKVEVEQLSARRTGLVVTELPYMVGPEKVIEKIKDAVNAKKLTGISDIVD 304

Query: 302 ESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +DR  G R+VIELK G + + +L QLYRY+ ++  F +N V L   +P+   L+ +L  
Sbjct: 305 LTDRKHGLRLVIELKNGFNPNAVLQQLYRYSPMEDSFGINNVTLVDGQPQTLGLVQLLTV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  R +VV RRT + L K +DR H++ GL IA+ ++DEV++IIR S     AR  LM  
Sbjct: 365 YVNHRIDVVRRRTVFRLGKKKDRLHLVEGLLIAIVDIDEVIQIIRSSDEAAAARARLMS- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E+Q   ILELRL +LT   R ++  E + L
Sbjct: 424 -------------------------IYDLTEIQANYILELRLRQLTKYSRIELEKEQDEL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI------- 533
             EI E   IL S  RL  ++  EL ++ +E  TPRRT ++E                  
Sbjct: 459 RREIAELEAILGSEERLRTLVSDELGAIAEEHGTPRRTVLLESEAVSPTIAADLALAAGK 518

Query: 534 -----------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                        +     ++  G + R          +     +G   + + F   +  
Sbjct: 519 KGKAVPLALEIADDPCWAILTASGQIAR-------TSNQEPLAEAGPRTKHDVFT-SVVK 570

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            S    +   +S G + + +V  +P+  P +    L   +   +   +            
Sbjct: 571 TSARGEIAAVTSQGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFAPL 630

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTK 701
             +  +   T  G V+R +    +      +I + L  +D ++ V     ++ +++  T 
Sbjct: 631 --DEVLAVGTAQGVVKRVQPDYPLN-REDWEI-ISLKDKDFVVGVAPAGADDAELVFLTS 686

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             Q ++F  +++R   GR + G+ GI LA GD+V+    V   D             +  
Sbjct: 687 QAQLLKFAAASVRP-QGRTAGGMVGIKLAAGDRVLFFGAVQPKDEAAVVVTIAGTTGALP 745

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                     +  G  K T+  ++    
Sbjct: 746 G-----------------------------------------TAPGTAKVTAFSEYPAKG 764

Query: 822 RSGKGIRATDVSKINEI 838
           R+  G+RA    K  + 
Sbjct: 765 RATAGVRAHRFLKGEDT 781



 Score = 58.3 bits (139), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 8/157 (5%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
               R+  ++ M             +            +  E        ++ +   + +
Sbjct: 581 TSQGRMLRLQVMDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFAPLDEVLAVGTAQ 640

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRV 865
           G  KR    D+ + NR    I +       +   +V V P   +D +++ ++ +  L++ 
Sbjct: 641 GVVKRVQP-DYPL-NREDWEIISLK-----DKDFVVGVAPAGADDAELVFLTSQAQLLKF 693

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               +R   R   G+V    A  +RV+    ++  + 
Sbjct: 694 AAASVRPQGRTAGGMVGIKLAAGDRVLFFGAVQPKDE 730



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 82/269 (30%), Gaps = 38/269 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++      T  G + R    + +               D   SV   +   +I   T  G
Sbjct: 531 DDPCWAILTASGQIARTSNQEPLAEAGPRT------KHDVFTSVVKTSARGEIAAVTSQG 584

Query: 704 QCVRFPISA---IRVFAGRN--SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + +R  +     +   +G    + GV     ++L KG+ +++ A          + +  +
Sbjct: 585 RMLRLQVMDMPVLPPMSGLPNLAGGVPAKEFLTLLKGETLVAFA--------PLDEVLAV 636

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  + +  D           S++              +  ++ ++ +    + ++ 
Sbjct: 637 GTAQGVVKRVQPDYPLNREDWEIISLKDKDFVVGVAPAGADDAELVFLTSQAQLLKFAAA 696

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV------------SDKGTLI 863
             R   R+  G+    ++  +    ++    V   D+  +V            +  GT  
Sbjct: 697 SVRPQGRTAGGMVGIKLAAGDR---VLFFGAVQPKDEAAVVVTIAGTTGALPGTAPGTAK 753

Query: 864 RVPVNEIRIASRATKGVVIFS-TAKDERV 891
               +E     RAT GV        ++ +
Sbjct: 754 VTAFSEYPAKGRATAGVRAHRFLKGEDTL 782


>gi|148241104|ref|YP_001226261.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
 gi|147849414|emb|CAK26908.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307]
          Length = 820

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/833 (32%), Positives = 433/833 (51%), Gaps = 57/833 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I S+S+  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   DERIVSISLHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +  R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFGCRNPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  LL+++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPVSHQALLEEIGSDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  VA+I NP++  + L++++ GPDFPTG V+L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDALVALIRNPNLSDEKLLQLVPGPDFPTGGVVLTGSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  +V+TE+PYQ++KA  +EK+AE V + ++  IAD+RDESDR 
Sbjct: 243 GVAHIEEVQPGKGRHKRNAVVITELPYQLSKAGWIEKLAEQVNDGKVAGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A+ + +L QL++ T+LQ+ F   ++AL   +P + +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDANPEQVLAQLHKRTALQNNFGAILLALVNGQPIQLSLRQMLQQFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT+Y L +  +R  V+ GL  A+ +L +V+++I+ + +  +A+  L         
Sbjct: 363 LTMMRRTRYALRRCEERLEVVEGLIKALDDLAKVIQMIQDARDAASAKASL--------- 413

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + +SE Q  A+L + L RLTGL ++ +R EL  L  E   
Sbjct: 414 -----------------QVHLDISERQADAVLSMPLRRLTGLEQESLRQELEELRQEQSR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV---- 542
              +L  R  LL  +  EL  ++    TPRRT + EG  ++  +    +      +    
Sbjct: 457 LRHLLDDRKSLLDTLVSELKHLRKRYATPRRTALQEGGDELVAQRTAAQRPNTEMLRKQA 516

Query: 543 ----SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV-----TDLFIVSTHTSVLFFS 593
               S    +      + R       GR  ++   +          L  V     +L F+
Sbjct: 517 LANVSSDQQLLWQSDGILRLVTPQVLGRLHLLDDLDFGDHGCSAKLLLPVQPEPQLLAFT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V   +           +   L   L  +   +   ++       +  +  V   + 
Sbjct: 577 SGGRVAALRWE-----FAAQQPGPLERFLPDSVDGQAEQVVDVLVVPPADQDFSVGLLSS 631

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA- 712
            G  +R    D  +++      +KL    ++  V  C   +D+ + +  G+ +R P+   
Sbjct: 632 DGRFKRLAGQDLRELSGRATTVLKLKDGVQLQRVVMCRPGDDLAVASSTGRMLRLPVDDS 691

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                GR + G   + L  G+ +    +   A A   + +   +    +R  I       
Sbjct: 692 TIPVMGRTAQGPVLMRLLPGESI----VGAAAVAAGGDVLLISQLGQLKRLGIDHLRRCQ 747

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS-NRSG 824
                +  +      +   +L+     +   ++ G   R +S    +   R  
Sbjct: 748 RGAIGEIGLRFEQRNDALTDLRSTTARLSVETQAGSL-RLASDSLPVQDGRGT 799



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +              +  +  +         E     +       + +        ++  
Sbjct: 566 VQPEPQLLAFTSGGRVAALRWEFAAQQPGPLERFLPDSVDGQAEQVVDVLVVPPADQDFS 625

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +  +S  G  KR +  D R +S R+        +    ++  +V   P    D + + S 
Sbjct: 626 VGLLSSDGRFKRLAGQDLRELSGRAT---TVLKLKDGVQLQRVVMCRP---GDDLAVASS 679

Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERV 891
            G ++R+PV++  I +  R  +G V+      E +
Sbjct: 680 TGRMLRLPVDDSTIPVMGRTAQGPVLMRLLPGESI 714


>gi|159029636|emb|CAO87714.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 884

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 281/902 (31%), Positives = 443/902 (49%), Gaps = 51/902 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++Y+AL RM QD+S R  L+ G GNFGS+D DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETR 131

Query: 135 LQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       +L  + +  V+F  N+D S QEPVVL A+ P +++NG  GIAVGMATNIP H
Sbjct: 132 LAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV+G +A+IDNPD+  + L+EII GPDFPTG  IL  TGI+ AY TGRG I +RGV
Sbjct: 192 NLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDTGIREAYRTGRGIIPVRGV 251

Query: 254 SHIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +  E      K   +R  IVVTE+P+QVNKAA +EKIAELV   ++  IAD+RDES+R+G
Sbjct: 252 AKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDESNREG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR +    +L  LY+ T+LQ+ F   ++AL   +P + +L  +L+ F+ FRE 
Sbjct: 312 IRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQPRQLSLKQVLQEFLRFRET 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+    L +A DR H++ GL +A+ N+D VV I++ +P+  TA+             
Sbjct: 372 TLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRF---------- 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                              + +S+ Q  +IL + L RLTGL R  +  E   L  +I++ 
Sbjct: 422 ----------------QAELGISDPQADSILAMPLRRLTGLERQKLETEATELQTKIQQL 465

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             +L +R   L  +K+EL S+K +    RRT+I  G      ++   ++   V       
Sbjct: 466 ETLLHNRQEFLKSLKKELRSLKKKFADSRRTKIRTGKSGDRRQETEGKKLDSVVKKQETG 525

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            +R      + Q  G K  S V  ++         V    + +   S            P
Sbjct: 526 ERRQETGDGKQQAAGKKQDSVVKKQETADGKREAEVKKQENKVKKKSESENAPSLSLFTP 585

Query: 608 IGSPQAR-----GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              P+        +  I+  +  +      ++ + +      N  V+             
Sbjct: 586 QEPPENAILLLDAEDKISWTTPEERVPDRDLIIYQQAIEKQENFLVILDNAKAYPISILE 645

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETC-------TQENDILLTTKLGQCVRFPISAIRV 715
                       ++   +  +               +  ++LL ++ G+  R  I+ +  
Sbjct: 646 VPPQGNQPVLISSLLTKTAQKESEAVLNQFFLTKPQKNQELLLLSQQGRIKRLSINELE- 704

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             G  S G+  + L + D++ +                        R  +     +    
Sbjct: 705 --GVGSRGLSLMKLKEDDRLYAAIFTHEGLDLAIATSSGRVLRYPVREELLPIMGKSAQG 762

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                +        C  L  +E  +L +S  G+GKR +  + R+S     G  A     +
Sbjct: 763 LAILRLRYGEHLAGCVSLPHRENLLL-ISGLGYGKRLAIENLRLSQLGDLGSPALQF--V 819

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N+  +L A+        ++L +++   + + V  + +  +   G  +      E+++  +
Sbjct: 820 NKQDSLAAMVAARAGSIVLLSTNQERKLPLEVETVTVTGKDGTGSQLVKLNPTEKIIKAQ 879

Query: 896 RI 897
            +
Sbjct: 880 LL 881



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 7/156 (4%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           + +   +  +    +            K        +  +       K Q +L +S++G 
Sbjct: 635 NAKAYPISILEVPPQGNQPVLISSLLTKTAQKESEAVLNQFFLTKPQKNQELLLLSQQGR 694

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            KR S  +  +     +G+    + +      L A    ++   + + +  G ++R PV 
Sbjct: 695 IKRLSINE--LEGVGSRGLSLMKLKE---DDRLYAAIFTHEGLDLAIATSSGRVLRYPVR 749

Query: 869 E--IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           E  + I  ++ +G+ I      E +     +   E 
Sbjct: 750 EELLPIMGKSAQGLAILRLRYGEHLAGCVSLPHREN 785


>gi|219683436|ref|YP_002469819.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621086|gb|ACL29243.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011]
          Length = 982

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/887 (30%), Positives = 414/887 (46%), Gaps = 114/887 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  
Sbjct: 12  DPRQVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLP 71

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 72  TRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG 
Sbjct: 191 TNMATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGV 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R  +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +D   
Sbjct: 251 VTTRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHN 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R 
Sbjct: 311 GTRIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRR 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R      
Sbjct: 371 GVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++ +E + L   I E
Sbjct: 425 --------------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------------------------- 520
              IL S + L G++  E+        TPRRT +                          
Sbjct: 465 LERILGSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALD 524

Query: 521 -----------------VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
                                 +  +   I  E  V+ +S  G + R+ +          
Sbjct: 525 AARHAENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDA--LTIWAK 582

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--IGSPQARGKALINI 621
           +G        +D +  L    T       +S G +    V  LP    +        I  
Sbjct: 583 RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEA 642

Query: 622 LSLNQGERITTIMP-------------FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             L      T  +P               +D+++     V   T++G V+R        +
Sbjct: 643 TELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTM 702

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  + L   DE+L       ++  +  +     + +    +R   GR + G+ GI 
Sbjct: 703 --DSWSIIDLKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRTAAGMAGIH 759

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA G  V+S A+V HAD ++ +               +        +             
Sbjct: 760 LADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDA----------- 808

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                       L  +E G  K T    +    R+  G+R+    K 
Sbjct: 809 ------------LPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKG 843



 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 44/256 (17%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E         E  ++  +  G   R  I A+ ++A R +           D ++S+    
Sbjct: 547 ETAEALRIEDEPCVIALSASGLIARMSIDALTIWAKRGAH---TEKREPDDVIVSLMPAR 603

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          ++    L + +     SL         ++     +    E+ I T
Sbjct: 604 TRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIAT 663

Query: 803 V---------------------SEKGFGKR------TSSYDFRISNRSGKGIRATDVSKI 835
           +                     +  G  KR      T+   + I           D+   
Sbjct: 664 LALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMDSWSI----------IDLKDG 713

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +E+  LVA    +D+D+ + VS   +L+      +R   R   G+     A    V+S  
Sbjct: 714 DEL--LVAADA-HDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCA 770

Query: 896 RIRESEIV-DEAESTE 910
            +  +++   +AE  +
Sbjct: 771 VVAHADVEWHDAEHDD 786


>gi|166030881|ref|ZP_02233710.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
 gi|166029148|gb|EDR47905.1| hypothetical protein DORFOR_00561 [Dorea formicigenerans ATCC
           27755]
          Length = 746

 Score =  617 bits (1592), Expect = e-174,   Method: Composition-based stats.
 Identities = 257/728 (35%), Positives = 400/728 (54%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 2   QDSQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQ++   + L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMALVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL K+ VDF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKNIVDFMPNFDETEKEPEVLPVRVPNLLINGADGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D   A + + DI    LM+ I+GPDFPTG +++ +  +   Y +G G I +
Sbjct: 182 PPHNLAEVIDAVEAYMKHEDISTKQLMKCIKGPDFPTGGIVVNKDDLLEIYESGAGKIKV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG   +E+  G ++++V+TEIPY +  A + + + +   LV  K+  DI D+ + S ++G
Sbjct: 242 RGKVEVEEMKGGKKRLVITEIPYTMIGAGIGKFLNDVCALVETKKTNDIVDISNMSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIELKKGADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKKIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K RDR  +  GL  A   +D ++ I+R S +   AR  L Q        
Sbjct: 362 LATRKYKTLLAKERDRKEIQEGLIKACDVIDLIIEILRGSQSVADARACLTQGITENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I               +  +E Q  AILE+RL +L GL  + +  E       I   
Sbjct: 422 KSGISR--------KMAAMLRFTERQANAILEMRLYKLIGLEIEALMKEHEETLKNIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L   K E    RRT +  G   + +E  +  +++V  +   GY
Sbjct: 474 EDILNNYDSMAEVIIEDLEHFKKEYARKRRTVVENGQEAVYEEKKVEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +             +     +        +  F++ G +++ KV  LP
Sbjct: 534 AKTVDVATYERNKEAA----------DAENKWIVNCINTGKLCVFTNTGKMHQIKVLDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G+ + N+ + +  + +   M    DE       ++FATK G +++ K ++F  
Sbjct: 584 YGKFRDKGQPIDNVSNYDSTQEMVVYMC---DELQLRYAKLLFATKQGMIKKVKGNEFQV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE++SV+  T +  ++L TK G  +RF    +     + +VGVRGI
Sbjct: 641 AK-RTIAATKLQEDDELISVQVITDDQHVVLQTKDGYFLRFSAQEVAEKK-KAAVGVRGI 698

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 699 KLRKNDEL 706



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+   +++           +    +   +         D  +     ++      +    
Sbjct: 551 AENKWIVNCINTGKLCVFTNTGKMHQIKVLDLPYGKFRDKGQPIDNVSNYDSTQEMVVYM 610

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C EL+L+   +L  +++G  K+    +F+++ R          +K+ E   L++V  + D
Sbjct: 611 CDELQLRYAKLLFATKQGMIKKVKGNEFQVAKR------TIAATKLQEDDELISVQVITD 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +  ++L +  G  +R    E+    +A  GV      K++ +
Sbjct: 665 DQHVVLQTKDGYFLRFSAQEVAEKKKAAVGVRGIKLRKNDEL 706


>gi|329736620|gb|EGG72886.1| DNA topoisomerase IV, A subunit [Staphylococcus epidermidis VCU045]
          Length = 800

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 279/887 (31%), Positives = 462/887 (52%), Gaps = 102/887 (11%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +A  R H++ GL  A++ LDEV+ +IR S N + A+  L+                 
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAE--------------- 409

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         +E Q  AI+ L+L RLT    + ++ E   L   IKE  +IL +  
Sbjct: 410 -----------YDFTEAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHE 458

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            LL +IK EL  +K +    R + I      + ++ E  +  E+++++++  GY+KR   
Sbjct: 459 ALLAVIKDELNEIKKKFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTST 518

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             + A        + + ++D D +     V+T  +VL F++ G      V +L     + 
Sbjct: 519 RSFNASG-----VTEIGLKDGDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKE 573

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ +  I+ +++ E +   +    ++   N  + + ATK+G ++++  S F     +  
Sbjct: 574 LGQHISQIVPIDEDEEV---VNVYNEKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKP 630

Query: 674 -IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            I MK+  +DE+++V     +  I + T  G  + +  + +    G  + GV+ I+L   
Sbjct: 631 LINMKVKDKDELINVVRLESDQLITVLTHKGMSLTYSTNEL-SDTGLRAAGVKSINLKDE 689

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+    V  +D+                                              
Sbjct: 690 DYVVMTEDVNDSDS---------------------------------------------- 703

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
                  I+ V+++G  KR      + + R+ +GI      K      +VA   V +N  
Sbjct: 704 -------IIMVTQRGAMKRIDFNVLQEAKRAQRGITLLKELKKKPH-RIVAGAVVKENHT 755

Query: 853 IILVSDK-----GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +V  +     G      ++++ ++ + T G  I  T     V S+
Sbjct: 756 KYIVFSQHHEEYG-----NIDDVHLSEQYTNGSFIIDTDDFGEVESM 797



 Score = 77.5 bits (189), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 23/290 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MK 677
           I  L     E    I        +   L  V   +   +++     F     S   A + 
Sbjct: 433 IEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKK----KFKVDRLSTIEAEIS 488

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++ 
Sbjct: 489 EIKIDKEVMVP---SEEVILSLTQHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLK 539

Query: 738 MAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              V   D      ++       +     +   +  +  S       +  +     ++  
Sbjct: 540 HESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDF 599

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E F +  ++ G  K++S+  F+ + R  K +    V   +E+  +V +    ++DQ+I
Sbjct: 600 KNEAFYIMATKNGMIKKSSASQFKTT-RFNKPLINMKVKDKDELINVVRL----ESDQLI 654

Query: 855 -LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ KG  +    NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 655 TVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 704



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  E+   +
Sbjct: 490 IKIDKEVMVPSEEVILSLTQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQ 546

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+ +  P+  +        +G    + + + + ++V+   +    D   + 
Sbjct: 547 DTVLVFTNKGRYLFIPVHKLADIR-WKELGQHISQIVPIDEDEEVV--NVYNEKDFKNEA 603

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFG 809
                      ++  +   +     K   +++    +E    ++L+   ++TV + KG  
Sbjct: 604 FYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMS 663

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S+ +   +     G+++ ++        +V    VND+D II+V+ +G + R+  N 
Sbjct: 664 LTYSTNELSDTGLRAAGVKSINLKD---EDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV 720

Query: 870 IRIASRATKGVVIFS-TAKD-ERVVSVERIRES 900
           ++ A RA +G+ +     K   R+V+   ++E+
Sbjct: 721 LQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 753


>gi|116627478|ref|YP_820097.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
 gi|116100755|gb|ABJ65901.1| DNA topoisomerase IV subunit A [Streptococcus thermophilus LMD-9]
          Length = 806

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 263/785 (33%), Positives = 415/785 (52%), Gaps = 43/785 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG 
Sbjct: 1   MGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 61  FHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV +  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL EV+D  V 
Sbjct: 121 DIDKNTVPWAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNLAEVIDAVVY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+P   LD LME + GPDFPTGA+I G+  I+ AY TG+G +V+R  + IE+  G ++
Sbjct: 181 MIDHPSAKLDKLMEFLPGPDFPTGAIIQGKDEIRKAYETGKGRVVVRSRTEIEQLKGGKK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI+VTEIPY VNKA +++KI ++    ++  IA++RDESDR G R+ IELK+ A +  IL
Sbjct: 241 QIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRSGLRIAIELKKDADSQTIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L +YT LQ  ++ NMVA++ + P +  L  IL +++A R +++V R+K+   KA  R 
Sbjct: 301 NYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRRDIIVARSKFDKEKAEKRL 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H++ GL   ++ LDEV+ +IR S N   A+  L                           
Sbjct: 361 HIVEGLIRVISILDEVISLIRASENKSDAKENL--------------------------K 394

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +   SE Q  AI+ L+L RLT      ++NE  +L  +I     I+     L  ++K+E
Sbjct: 395 VSYDFSEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLFNVMKRE 454

Query: 505 LLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  +K +    RR+ +      ++++    IV E+  V+++  GYVKR     + A +  
Sbjct: 455 LRDIKKKFGNDRRSELQAETKTIEIDTASLIVEEETYVSITRGGYVKRTSPRSFNASK-- 512

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 V  RD+D +  +    T   +L F++   V    +  LP    +  G+ L   +
Sbjct: 513 ---IEEVGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLGEHLSQTI 569

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM---KLD 679
           +    +         +D   +     +  TK G ++R +  +F         ++   KL 
Sbjct: 570 TNFSKDEEVLYAEILDD---FETGTYLATTKLGQIKRFERKEFTPWRTYKSKSVKYGKLK 626

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
              +++   T  Q +DI++ T+ G  +RF    +    G  +VGV+ I+L   D+V ++ 
Sbjct: 627 DESDVIVTVTPIQLDDIMIITQKGYALRFNADEV-PVVGAKAVGVKAINLKDDDKVQAVF 685

Query: 740 IVLHADADYDERICYMKHMSA---QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           +          +   +K ++     R   +G   ++             +     E    
Sbjct: 686 VANTQSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLRELKTKPHRVFTAGPVFTENAGA 745

Query: 797 EQFIL 801
           E  +L
Sbjct: 746 EIDLL 750



 Score = 78.3 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 67/527 (12%), Positives = 155/527 (29%), Gaps = 34/527 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  RT+    K   +  ++  +   V     V +I     N +      ++   + S
Sbjct: 223 RVVVRSRTEIEQLKGGKKQIIVTEIPYDVNKAVLVKKIDDIRVNNKVPGIAEVRDESDRS 282

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D+      +  +  +++Q      ++ +       +G   I +   +   
Sbjct: 283 GLRIAIELKKDADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYIAHRR 342

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I               +   E L     +       I          D      +    
Sbjct: 343 DIIVARSKFDKEKAEKRLHIVEGLIRVISILDE---VISLIRASENKSDAKENLKVSYDF 399

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 + +  L  +      LF           
Sbjct: 400 SEEQAEAIVTLQLYRLTNTDIVALQNEEANLREQIATLAAIIGDERTLF----------- 448

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +     +   K   N             +              V  T+ G V+R   
Sbjct: 449 --NVMKRELRDIKKKFGNDRRSELQAETK-TIEIDTASLIVEEETYVSITRGGYVKRTSP 505

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-- 720
             F          +     D+++ V+       +L+ T     +  PI  +     ++  
Sbjct: 506 RSFNASKIEE---VGKRDDDDLILVQQAKTTQHLLIFTNQANVIYRPIHELPDIRWKDLG 562

Query: 721 ---SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
              S  +   + +K ++V+   I+   +         +  +    R          S   
Sbjct: 563 EHLSQTIT--NFSKDEEVLYAEILDDFETGTYLATTKLGQIKRFERKEFTPWRTYKSKSV 620

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                 + S+       ++   I+ +++KG+  R ++ +  +      G++A ++   ++
Sbjct: 621 KYGKLKDESDVIVTVTPIQLDDIMIITQKGYALRFNADEVPVVGAKAVGVKAINLKDDDK 680

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
               V    V +     L++ + +L RV  ++I  A RA +G+ +  
Sbjct: 681 ----VQAVFVANTQSFYLLTQRASLKRVATSDIPRAKRAGRGLQVLR 723


>gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 821

 Score =  617 bits (1590), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/862 (31%), Positives = 406/862 (47%), Gaps = 106/862 (12%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +  +    E ++ I+ + ++ EM+ S+L YA++VI  RA+PD RDGLKPV RRIL+ M Q
Sbjct: 4   KDQVVDVPEADENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQMDQ 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  ++ +VK  R+ GEVMGK HPHG++AIY+AL R+AQ ++LRL L++G GNFGS+D 
Sbjct: 64  MGLRPDRGHVKSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+  AA  L+  LG+DTVDF PNYD  F +P VL A +P +LVNG  GI
Sbjct: 123 DGPAAARYTEARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNI  HNL E + G V ++D+PD  +  LM  + GPD P G VI+G  G+K AY 
Sbjct: 183 AVGMATNIAPHNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGGVIVGLEGVKEAYE 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+   R    +E+ +  +  ++VT++PY V    ++EKI E V   R+  I+ +++ 
Sbjct: 243 TGRGAFKTRAKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISSVQNL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G + + +L QLY+ T L+  FS+N VAL G +P+   L  IL+ F
Sbjct: 303 TDRIHGLRLVIEVKNGFNPEAVLQQLYQRTPLEDSFSINAVALVGGQPQVMGLKQILRVF 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  R +V  RR+++ L K  +R H++ GL IA+ ++D+V+ IIR S + + AR  LM   
Sbjct: 363 VDHRLDVTTRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARERLMT-- 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS+ Q   ILELRL RLT   R ++  E + L 
Sbjct: 421 ------------------------AFDLSQAQADYILELRLRRLTKFSRIELEAERDELA 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED------------ 529
             I E  ++L S   L  ++K+EL  V + L TPRRT ++                    
Sbjct: 457 ARIAELREVLESPELLRALVKRELAEVSERLGTPRRTVLLASSGAPVVGGAGASSLAALP 516

Query: 530 ---------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                    E  I  +   V +S  G + RV          G            D     
Sbjct: 517 SVPRSGKGLELQIPDDPCQVVLSATGALARV---------EGVDPLEPGPRAAFDGWRAQ 567

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
              S  + V   +  G  ++  V  LP       G +L   +  ++     +        
Sbjct: 568 LPSSVRSQVAVVTEDGVAHRIDVVDLPALPRFDTGMSLAGAVPASELLHSDSR--PVGLL 625

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
               +      T  G V+R +     +        + LD  D ++    C  E D++  +
Sbjct: 626 DPDGSAVSAMGTARGTVKRLRPDVLQR---DEWEVIALDPGDRLIGFAPCPDEADVVFIS 682

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
              Q +R P   IR   GR + GV G+ L+ G + I   +V          +   +    
Sbjct: 683 GDAQLLRTPAERIRP-QGRTAGGVAGMRLSPGVEAIGFWVVDAPAESVVVTVAAAEGALP 741

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                +                                           K T    +   
Sbjct: 742 GTGQTT------------------------------------------VKVTPFDAYPSK 759

Query: 821 NRSGKGIRATDVSKINEIGALV 842
            R G+G+RA    +  +   + 
Sbjct: 760 GRGGQGVRAQRFLRGEDRLDVA 781



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/65 (18%), Positives = 21/65 (32%)

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +    L+   P  D   ++ +S    L+R P   IR   R   GV     +     +   
Sbjct: 661 DPGDRLIGFAPCPDEADVVFISGDAQLLRTPAERIRPQGRTAGGVAGMRLSPGVEAIGFW 720

Query: 896 RIRES 900
            +   
Sbjct: 721 VVDAP 725



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 28/221 (12%)

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + + + T+ G   R  +  +      ++    G+SLA     +  + +LH+D+     + 
Sbjct: 574 SQVAVVTEDGVAHRIDVVDLPALPRFDT----GMSLAG---AVPASELLHSDSRPVGLLD 626

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK-----LKEQFILTVSEKGF 808
                 +      G  + +            I+ +    L        E  ++ +S    
Sbjct: 627 PDGSAVSAMGTARGTVKRLRPDVLQRDEWEVIALDPGDRLIGFAPCPDEADVVFISGDAQ 686

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS---DKG----- 860
             RT +   R   R+  G+    +S   E    +  + V+   + ++V+    +G     
Sbjct: 687 LLRTPAERIRPQGRTAGGVAGMRLSPGVEA---IGFWVVDAPAESVVVTVAAAEGALPGT 743

Query: 861 ---TLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERI 897
              T+   P +      R  +GV        ++R+  V  +
Sbjct: 744 GQTTVKVTPFDAYPSKGRGGQGVRAQRFLRGEDRL-DVAWV 783


>gi|227543441|ref|ZP_03973490.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300910108|ref|ZP_07127568.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
 gi|227186593|gb|EEI66664.1| DNA topoisomerase IV subunit A [Lactobacillus reuteri CF48-3A]
 gi|300892756|gb|EFK86116.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus reuteri
           SD2112]
          Length = 821

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/763 (35%), Positives = 425/763 (55%), Gaps = 43/763 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   NGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDPPAA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  + +I +P   LD LME I GPDFPTG +I G  GI+ AY TGRG +V+R 
Sbjct: 183 HNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   GDR+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ I
Sbjct: 243 KTEIETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA+A+ ILN L + T LQ  ++ NMVA++  +P R  L  IL +++ F++E++ RR
Sbjct: 303 ELKRGANANGILNYLLKNTDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y L KA+ R H++ GL  A++ LD+V++ IR S N + A+  L++             
Sbjct: 363 TQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNRKDAKENLVKE------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT     +++ E   L   I E   IL+
Sbjct: 411 --------------YNFTPEQAEAIVTLQLYRLTNTDVTELKKEQEQLNSRINEYQLILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           + + L  ++ +E+ ++K E   PRRT+I   +   +++ +  +  ED+VV VSH GY+KR
Sbjct: 457 NENELAKVLTKEIRAIKKEFGNPRRTKIENLVEKLEIDTKVTVANEDVVVLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A            +R++D+   +   +T + +  F++LG +    +  +    
Sbjct: 517 SSIRSFKASEAEEN-----GLREDDYPLLIQQTNTLSHLFMFTNLGHIIYRPIHEIADAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ +   + L   E I   M F + +       ++  T  G V++   +D+    +
Sbjct: 572 WKDTGEHISQTIGLADNEEIIKAMIFDKLD---QPGTIIMGTSDGQVKQTAFNDYKPGSR 628

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                 +A+KL    ++++V+     N+   +L  ++ G  VR+ ++ +    G  + GV
Sbjct: 629 YKSHASVAIKLRDNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADV-PVTGIRTAGV 687

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           R I+L   DQV    +V                      +  G
Sbjct: 688 RAINLKDDDQVADQILVKDGQDIAVITQRGAFKEMPVDEIEVG 730



 Score = 79.1 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/300 (16%), Positives = 104/300 (34%), Gaps = 18/300 (6%)

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
           +   L  ++   + K     +     +        I +L +   I T +    ++     
Sbjct: 449 NEYQLILTNENELAKVLTKEIRAIKKEFGNPRRTKIENLVEKLEIDTKVTVANEDV---- 504

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             VV  +  G ++R+ +  F            L   D  L ++     + + + T LG  
Sbjct: 505 --VVLVSHAGYIKRSSIRSFKASEAEEN---GLREDDYPLLIQQTNTLSHLFMFTNLGHI 559

Query: 706 VRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYD----ERICYMKHMS 759
           +  PI  I     +++     + I LA  +++I   I    D             +K  +
Sbjct: 560 IYRPIHEIADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVKQTA 619

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                     +   S+         +      E   + + +LT+S +G+  R    D  +
Sbjct: 620 FNDYKPGSRYKSHASVAIKLRDNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPV 679

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +     G+RA ++        +     V D   I +++ +G    +PV+EI + +RA +G
Sbjct: 680 TGIRTAGVRAINLKD---DDQVADQILVKDGQDIAVITQRGAFKEMPVDEIEVGARARRG 736



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 94/271 (34%), Gaps = 21/271 (7%)

Query: 645 NLYVVFATKHGNVRRNKLSDFIQI-----NRSGKIAMKLDSRDEILSVETCTQENDILLT 699
           N Y +  T    + +    +   I     N        L  + EI +  T   E+ ++L 
Sbjct: 449 NEYQLILTNENELAKVLTKEIRAIKKEFGNPRRTKIENLVEKLEIDTKVTVANEDVVVLV 508

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ---VISMAIVLHADADYDERICYMK 756
           +  G   R   S+IR F    +       L + D    +     + H     +      +
Sbjct: 509 SHAGYIKR---SSIRSFKASEAEEN---GLREDDYPLLIQQTNTLSHLFMFTNLGHIIYR 562

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +         DT E  S     +    I +    +   +   I+  +  G  K+T+  D
Sbjct: 563 PIHEIADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVKQTAFND 622

Query: 817 FRISNRSGK-GIRATDVSKINEIGALVAVF---PVNDNDQIILVSDKGTLIRVPVNEIRI 872
           ++  +R       A  +        +V V    P N+N  ++ +S +G  +R  V ++ +
Sbjct: 623 YKPGSRYKSHASVAIKLRD---NAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPV 679

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               T GV   +   D++V     +++ + +
Sbjct: 680 TGIRTAGVRAINLKDDDQVADQILVKDGQDI 710


>gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 798

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 271/807 (33%), Positives = 434/807 (53%), Gaps = 46/807 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QI+VTEIPY+VNK+A++++I EL   K++  I+++RDESDR+G RV
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  
Sbjct: 302 VIELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+            
Sbjct: 362 RRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q+ AI+ L+L RLT      ++ E   L   I    +I
Sbjct: 412 ----------------FSFTEAQSEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I++EL ++  +  + R T I + +    +E E  + +ED+++ VSH GYV
Sbjct: 456 LANPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  + A            ++DED+     +V+T + +  F++ G +    +  +  
Sbjct: 516 KRSSLRSFNASDNDEN-----GLKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   + L   E    ++     E+   ++  + ATK G +++ KL+D    
Sbjct: 571 SRWKDTGEHLSQTVGLENDE---YVLNAFVFENIDQDVKFLIATKEGYIKQVKLADLKPG 627

Query: 669 NRSGKIA---MKLDSR-DEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 A   +KL +  DE++SV +  + ++ +   +  G  +R+ +  +    G  + G
Sbjct: 628 RTYKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGLRYSLDEV-PTNGALAAG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L   D + ++ +V  +D                  +                   
Sbjct: 687 VKCMDLR-DDTLANVILVSESDEVSIITQRGSYKKMKVADVPLTTRARRGVQILRELKTK 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGK 810
                  + ++  ++ +L +S+   GK
Sbjct: 746 PHRIIFTELVQTNQELVLLLSD---GK 769



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 60/486 (12%), Positives = 152/486 (31%), Gaps = 43/486 (8%)

Query: 428 KDLIDLIDDSSYTIGSDGTMYL---SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             L+  ID+       +G   +   S+ +   ++          G  +   +   L +  
Sbjct: 269 SALVKRIDELRILKKVEGISEVRDESDREGLRVVIELKKNANAQGILNYLFKNTDLQVSY 328

Query: 485 KECLDILSS--RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
              +  +++     +      E         T RRT+        + E    RE +V  +
Sbjct: 329 NFNMVAINNKRPEHVGLKTILEAYLEHQREVTTRRTKF-------DLEKAKAREHIVKGL 381

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL------- 595
                +    +   RA +     +  +V            + +       ++        
Sbjct: 382 IKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQSEAIVSLQLYRLTNTDVTALQKE 441

Query: 596 --GFVYKEKVWRLPIGSPQARGKALINILS----------LNQGERITTIMPFPEDESSW 643
                     +   + +P+   K +   L+          L   +   + +    +    
Sbjct: 442 AEELQKAIANFENILANPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVA 501

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               ++  +  G V+R+ L  F   +        L   D  +        + + + T  G
Sbjct: 502 QEDVMLLVSHDGYVKRSSLRSFNASDNDEN---GLKDEDYPILQSVVNTLSHLFIFTNKG 558

Query: 704 QCVRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
             +  PI  +     +++     + + L   + V++  +  + D D    I   +    Q
Sbjct: 559 NLIYRPIHEVIESRWKDTGEHLSQTVGLENDEYVLNAFVFENIDQDVKFLIATKEGYIKQ 618

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFR 818
            +L           +    ++     +    +   E     +   S  G+G R S  +  
Sbjct: 619 VKLADLKPGRTYKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGLRYSLDEVP 678

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
            +     G++  D+        L  V  V+++D++ +++ +G+  ++ V ++ + +RA +
Sbjct: 679 TNGALAAGVKCMDL----RDDTLANVILVSESDEVSIITQRGSYKKMKVADVPLTTRARR 734

Query: 879 GVVIFS 884
           GV I  
Sbjct: 735 GVQILR 740


>gi|256851123|ref|ZP_05556512.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260660547|ref|ZP_05861462.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282932238|ref|ZP_06337682.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297205988|ref|ZP_06923383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
 gi|256616185|gb|EEU21373.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260548269|gb|EEX24244.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281303633|gb|EFA95791.1| DNA topoisomerase IV, A subunit [Lactobacillus jensenii 208-1]
 gi|297149114|gb|EFH29412.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           jensenii JV-V16]
          Length = 826

 Score =  616 bits (1589), Expect = e-174,   Method: Composition-based stats.
 Identities = 273/894 (30%), Positives = 435/894 (48%), Gaps = 93/894 (10%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++ + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K 
Sbjct: 3   QKTERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYLDNNTFDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RY
Sbjct: 63  FKKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDSPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL D+ KDTV+   N+D +  EP VL A++PN+LVNG  GI+ G AT I
Sbjct: 123 TESRLSKISNHLLADIDKDTVNMVLNFDDTEYEPTVLPAQFPNLLVNGATGISAGYATEI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  + ++ +P+  L  LM+ ++GPDFPTGA++LG  GIK AY +GRG I +
Sbjct: 183 PPHNLAEVIDATIYLLKHPNASLADLMQFVKGPDFPTGAIVLGDKGIKEAYESGRGRIQV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + I+     R+QIVVTEIP+ VNKA +++KI E+   K I  I+++RDE+DR G  +
Sbjct: 243 RAKTSIQDIKAGRQQIVVTEIPFGVNKAFLVKKIDEIRLNKEIDGISEVRDETDRHGLSI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+GA +  ILN L++ T LQ  +S NMVA++   P +  L  IL +++    +V+ 
Sbjct: 303 VIELKKGADSQNILNYLFKSTDLQVSYSFNMVAIDHMTPVQVGLKRILSSYLEHDADVIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RTKY L+KA+ R  ++ GL  A+  LD+V++ IR S N   A+  ++ +          
Sbjct: 363 KRTKYDLSKAKARLEIIEGLIHALDILDDVIKTIRASKNKADAKNNIIDK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ L+L RLT    + ++ E + L  +I     +
Sbjct: 413 ----------------FSFTPRQAEAIVSLQLYRLTNTDVNALQAEKSDLEEKIASYDLL 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           L+ R  L   I +EL +VK E  + RRT+I      ++++++  +  ED+ V VS  GY+
Sbjct: 457 LTDRKVLEKQIIKELNAVKKEFGSERRTKISSKTAKIEIDEKALVAEEDVRVLVSRDGYL 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  +++      G         +             +  F++ G V    V  L  
Sbjct: 517 KRSSLRSFQSTNDSENGLPDFDKVVFEKTMSTLTN-----LYIFTNKGNVIFRPVHELVE 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   L L+  E+I   +   E     + L  + AT  G +++  L+D    
Sbjct: 572 AKWKEPGQHLSQELGLDTDEQI---IAVFELAKLDSRLNFLLATNDGYIKQLALADIQPT 628

Query: 669 NR---SGKIAMKLDS-RDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   IAMKL      ++ VE  + +   +I L T     VR+ ++ I   +G  + 
Sbjct: 629 RTYKSRAMIAMKLKETASRVVRVEMISPDTKKEITLFTNHAYAVRYDVNEI-PTSGARAA 687

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ ++L   D V+    VL    D  +                                
Sbjct: 688 GVKSVNLKDDDFVVDYVTVLPEYLDMMKLG------------------------------ 717

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                               V+++G  K          +R+ +G+      K N    + 
Sbjct: 718 -------------------IVTQRGAFKEFKYELINKVSRAKRGVLVLRELKKNPH-RIA 757

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            V     N ++++ +     + +  N+  +  R + G  +     D    S+  
Sbjct: 758 GVVLFAQNHELLVETSSARTMTIKTNDFPLGDRYSNGSFVIDPIGDGEPTSLTL 811



 Score = 61.0 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 21/222 (9%)

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHA 744
               +E+  +L ++ G   R   S++R F   N        L   D+V+   +M+ + + 
Sbjct: 499 ALVAEEDVRVLVSRDGYLKR---SSLRSFQSTNDSEN---GLPDFDKVVFEKTMSTLTNL 552

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               ++     + +         +  +  S +     +  I               L  +
Sbjct: 553 YIFTNKGNVIFRPVHELVEAKWKEPGQHLSQELGLDTDEQIIAVFELAKLDSRLNFLLAT 612

Query: 805 EKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVSD 858
             G+ K+ +  D + +    +R+   + A  + +      +V V  ++ +   +I L ++
Sbjct: 613 NDGYIKQLALADIQPTRTYKSRA---MIAMKLKETAS--RVVRVEMISPDTKKEITLFTN 667

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS-VERIRE 899
               +R  VNEI  +     GV   +   D+ VV  V  + E
Sbjct: 668 HAYAVRYDVNEIPTSGARAAGVKSVNLKDDDFVVDYVTVLPE 709


>gi|254391069|ref|ZP_05006277.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
 gi|197704764|gb|EDY50576.1| DNA topoisomerase IV subunit A [Streptomyces clavuligerus ATCC
           27064]
          Length = 814

 Score =  616 bits (1587), Expect = e-174,   Method: Composition-based stats.
 Identities = 274/746 (36%), Positives = 402/746 (53%), Gaps = 52/746 (6%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              +   + E+ I  + + DEMQ S+L YA +VI  RA+PD RDG+KPV RRI++ M +M
Sbjct: 88  STKTPQPDFEEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMNEM 147

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG- 122
           G+  ++ YVKCAR+ GEVMGK HPHG+A+IYDAL RMAQ +S+R+ L++G GNFGS+   
Sbjct: 148 GLRPDRGYVKCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGND 207

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DPPAA RYTECR+  A   + + + +DTVDF PNYDG  QEPV L A YPN+LVNG  GI
Sbjct: 208 DPPAAMRYTECRMADATSLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGSSGI 267

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+P HNLGEV+     +I  P  DL+ALM  + GPD PTG  ++G +GI++AY 
Sbjct: 268 AVGMATNMPPHNLGEVIAAARHLIRYPGADLEALMRFVPGPDLPTGGRVVGLSGIRDAYE 327

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG+  IR  + +E  +  R+ IVVTE+P+ V    ++ KI +LV  K++  IAD++D 
Sbjct: 328 TGRGTFKIRATTSVEDVTARRKGIVVTELPFSVGPEKVISKIKDLVGSKKLQGIADVKDL 387

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE+K G   + +L QLY+ T ++  F +N VAL   +P    L  +L+ +
Sbjct: 388 TDRAHGLRLVIEIKNGFVPEAVLEQLYKLTPMEESFGINNVALVDGQPLTLGLKELLEVY 447

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  VV RR+++   + RDR H++ GL +A+ ++DEV+R+IR S N   A++ L++R 
Sbjct: 448 LDHRFTVVRRRSEFRRGRRRDRLHLVEGLLVALVDIDEVIRLIRSSENSAQAKQRLIER- 506

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQT+ IL+  L RLT   R ++ +E + L 
Sbjct: 507 -------------------------FGLSEVQTQYILDTPLRRLTKFDRIELESERDRLM 541

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--REDMV 539
            EI     IL S + L  ++  EL SV  +  T RRT ++E          +    +   
Sbjct: 542 DEIAALTRILESDAELRKLVSGELASVAKKFGTERRTVLLESGAVPAPAVALEVADDPCR 601

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G + R        +    + R  +V+            +    +   +S G + 
Sbjct: 602 VLLSSTGLLARTVTGDPLPEPGPKRARHDLVVSS-------VTATARGDIGAVTSAGRLL 654

Query: 600 KEKVWRLPIGSPQARGK------ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +  V  LP     A          L   LSL   E +  +    E     ++  +   T 
Sbjct: 655 RVAVIDLPQLPQTATAPTLSGGAPLSEFLSLEADETVICLTTLDE-----SSQGLALGTL 709

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISA 712
            G V+R          +       L   D I+   E  T E D++  T   Q +R+P + 
Sbjct: 710 QGVVKRVVPDYPAN--KDELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQ 767

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISM 738
           +R   GR + G+ G+ LA G +V+S 
Sbjct: 768 VRP-QGRAAGGMAGVKLADGARVLSF 792



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 22/192 (11%)

Query: 717 AGRNSVGVRGISLAK-------GDQVIS-------MAIVLHADADYDERICYMKHMSAQR 762
            G  +  V G  L +        D V+S         I     A    R+  +      +
Sbjct: 607 TGLLARTVTGDPLPEPGPKRARHDLVVSSVTATARGDIGAVTSAGRLLRVAVIDLPQLPQ 666

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
              +        L    S+E + +      L    Q +   + +G  KR    D+  +  
Sbjct: 667 TATAPTLSGGAPLSEFLSLEADETVICLTTLDESSQGLALGTLQGVVKRV-VPDYPANK- 724

Query: 823 SGKGIRATDVSKINEIGALVA-VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
                   +V  + E   +V         + ++ ++    L+R P  ++R   RA  G+ 
Sbjct: 725 -----DELEVFSLKEGDRIVGGAELRTGEEDLVFITSDAQLLRYPAAQVRPQGRAAGGMA 779

Query: 882 IFSTAKDERVVS 893
               A   RV+S
Sbjct: 780 GVKLADGARVLS 791


>gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
 gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118]
          Length = 808

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 270/807 (33%), Positives = 431/807 (53%), Gaps = 46/807 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 2   PTERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKA 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G VMG +HPHG+ +IY+A+ R++Q W LR  LIE  GN GS+DGD PAA RY
Sbjct: 62  FRKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  +L D+ K TVD   N+D +  EP VL AR+PN+LVNG  GI+ G AT I
Sbjct: 122 TEARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E ++  + +I++P+  LD LM+ I+GPDFPTG ++ G  GIK AY TGRG  V+
Sbjct: 182 PPHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGILQGIDGIKKAYETGRGRAVL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G+++QI+VTEIPY+VNK+A++++I  L   K++  I+++RDESDR+G RV
Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLRV 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIELK+ A+A  ILN L++ T LQ  ++ NMVA+N  +PE   L  IL+A++  + EV  
Sbjct: 302 VIELKKNANAQGILNYLFKNTDLQVSYNFNMVAINNKRPEHVGLKTILEAYLEHQREVTT 361

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RRTK+ L KA+ R H++ GL  A++ LD+V++ IR S N   A++ L+            
Sbjct: 362 RRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSE---------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      ++ E   L   I    +I
Sbjct: 412 ----------------FSFTEAQAEAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENI 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I++EL ++  +  + R T I + +    +E E  + +ED+++ VSH GYV
Sbjct: 456 LANPKELDKVIRKELNAINKKYGSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR  L  + A            ++DED+     +V+T + +  F++ G +    +  +  
Sbjct: 516 KRSSLRSFNASDNDEN-----GLKDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIE 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ L   + L   E    I+     E+   +   + ATK G +++ KL+D    
Sbjct: 571 SRWKDTGEHLSQTVGLGNDE---YILNAFVFENIDQDAKFLIATKEGYIKQVKLADLKPG 627

Query: 669 NRSGKIA---MKLDSR-DEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                 A   +KL +  DE++SV +  + ++ +   +  G  +++ +  +    G  + G
Sbjct: 628 RTYKTRASRYIKLKTDVDEVISVSQVESDKSQVFCASYTGYGLKYSLDEV-PTNGVLAAG 686

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+ + L   D + ++ +V  +D                  +                   
Sbjct: 687 VKCMDLR-DDTLANVILVSESDEVSIITQRGSYKKMKVADVPLTTRARRGVQILRELKTK 745

Query: 784 NISEERCQELKLKEQFILTVSEKGFGK 810
                  + ++  ++ +L +S+   GK
Sbjct: 746 PHRIIFAELVQTNQELVLLLSD---GK 769



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 95/266 (35%), Gaps = 12/266 (4%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L   +   + +    +        ++  +  G V+R+ L  F   +        L   D 
Sbjct: 482 LTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDEN---GLKDEDY 538

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIV 741
            +        + + + T  G  +  PI  +     +++     + + L   + +++  + 
Sbjct: 539 PILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYILNAFVF 598

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-- 799
            + D D    I   +    Q +L           +    ++     +    +   E    
Sbjct: 599 ENIDQDAKFLIATKEGYIKQVKLADLKPGRTYKTRASRYIKLKTDVDEVISVSQVESDKS 658

Query: 800 -ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +   S  G+G + S  +   +     G++  D+        L  V  V+++D++ +++ 
Sbjct: 659 QVFCASYTGYGLKYSLDEVPTNGVLAAGVKCMDL----RDDTLANVILVSESDEVSIITQ 714

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFS 884
           +G+  ++ V ++ + +RA +GV I  
Sbjct: 715 RGSYKKMKVADVPLTTRARRGVQILR 740


>gi|153855241|ref|ZP_01996407.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
 gi|149752240|gb|EDM62171.1| hypothetical protein DORLON_02421 [Dorea longicatena DSM 13814]
          Length = 746

 Score =  615 bits (1586), Expect = e-174,   Method: Composition-based stats.
 Identities = 260/728 (35%), Positives = 410/728 (56%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 2   QDSQIIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IYDAL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKDIVDFIPNFDETEKEPVVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEVVDG  A + N +I    LM+ I+GPDFPTG +++ +  +   Y TG G I I
Sbjct: 182 PTHNLGEVVDGVKAYMKNEEITTRQLMKYIKGPDFPTGGIVVNKDDLPEIYETGTGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQG 307
           RG   +E   G ++++V+TEIPY +  A + + +     LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEDMKGGKKRLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VI+LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++A V F+ +
Sbjct: 302 IRIVIDLKKGADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETMGLKRIIEAHVDFQFD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K +D+  +  GL  A   +D ++ I+R S N + A+  LM         
Sbjct: 362 MATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSQNVKDAKACLMNGETENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I             G +  +E Q  AILE+RL +L GL  + ++ E      +I++ 
Sbjct: 422 KSSISK--------KMAGMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLAKIEKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L  +K E    RRT +      + +E  +  +++V  +   GY
Sbjct: 474 EDILNNYDSMAAVIMEDLDRIKKEFARKRRTVVENAEEAVFEEKKVEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V +S Y   +             ++    +        +  F+  G +++ KV  +P
Sbjct: 534 AKTVDVSTYERNKEAA----------DNENKYILHCMNTGKICIFTKDGKMHQVKVMDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G+ + NI + +  +     +    D        ++FATK G +++ + ++F  
Sbjct: 584 YGKFRDKGQPIDNISNYDSTQEEIVYIC---DSEQMRYAKLLFATKQGMIKKVEGTEFQ- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   DE++ ++  T+   I+L T  G  +RFP + +     + ++GVRGI
Sbjct: 640 VTKRTITATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPAAEVTEKK-KGAIGVRGI 698

Query: 728 SLAKGDQV 735
            L K D +
Sbjct: 699 RLKKDDAL 706



 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 10/152 (6%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF----ILTVSEKG 807
               K    +   I            D+    + ++E    +   EQ     +L  +++G
Sbjct: 569 TKDGKMHQVKVMDIPYGKFRDKGQPIDNISNYDSTQEEIVYICDSEQMRYAKLLFATKQG 628

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             K+    +F+++ R          +K+     +V +  V +N  I+L +  G  +R P 
Sbjct: 629 MIKKVEGTEFQVTKR------TITATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPA 682

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            E+    +   GV      KD+ +  V    E
Sbjct: 683 AEVTEKKKGAIGVRGIRLKKDDALTDVYLFEE 714



 Score = 39.0 bits (89), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
               + G  +   +S + +   +          +E   +  C     I + TK G+  + 
Sbjct: 526 FLMDRFGYAKTVDVSTYERNKEAA--------DNENKYILHCMNTGKICIFTKDGKMHQV 577

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +  I     R+  G    +++  D      + +                    + + G 
Sbjct: 578 KVMDIPYGKFRD-KGQPIDNISNYDSTQEEIVYICDSEQMRYAKLLFATKQGMIKKVEGT 636

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++T     ++      E    ++  + Q I+  +  GF  R  + +     +   G+R
Sbjct: 637 EFQVTKRTITATKLQPEDEVVKIQVVTENQHIVLQTTDGFFLRFPAAEVTEKKKGAIGVR 696

Query: 829 ATDVSKINEIGAL 841
              + K + +  +
Sbjct: 697 GIRLKKDDALTDV 709


>gi|291550230|emb|CBL26492.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus torques L2-14]
          Length = 746

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 260/729 (35%), Positives = 399/729 (54%), Gaps = 27/729 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 2   SNESQIIRTEYSDLMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+ MGKYHPHG+++IYD+L  MAQD+    +L++G GNFGS++GD  AA RY
Sbjct: 62  YRKSARIVGDTMGKYHPHGDSSIYDSLVVMAQDFKKGQVLVDGHGNFGSIEGDGAAAMRY 121

Query: 131 TECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL K    + L DL K+ +DF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+
Sbjct: 122 TEARLTKFTQEVCLADLDKNVIDFGPNFDETEKEPLVLPMRVPNLLINGAEGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EVVD   A + N  I    LM+ I+GPDFPTG +++ +  +   Y +G+G I 
Sbjct: 182 IPTHNLCEVVDAVKAYMKNDKITTKQLMKYIKGPDFPTGGIVVNKDDLPAIYESGQGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQ 306
           +RG   +E+  G ++Q+V+TEIPY +  A + + +     LV  K+  DI D+ ++S ++
Sbjct: 242 LRGKVEVEELKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVESKKTTDIVDISNQSSKE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F+ 
Sbjct: 302 GIRIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLSLKQIIEHHVDFQF 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+   LL K R+++ V  GL  A   +D ++ I+R S + + AR  L+        
Sbjct: 362 ELATRKYTTLLGKEREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVNGETENIK 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  I               +  +E Q  AILE+RL RL GL  + ++ E       I  
Sbjct: 422 FKSAISK--------KMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEKTLENIAR 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++   + G+I +EL S K E    RRT +      + +E  I  + +V  +   G
Sbjct: 474 YEDILNNYDSMAGVIMEELDSYKKEFGRKRRTVVENAEEAVFEEKKIEEQQVVFLMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V   VY   +             +     +        +  F+  G +++ KV  L
Sbjct: 534 YAKTVDTGVYERNKEAA----------DKENKYIVHCMNIGKLCLFTDEGKMHQVKVLDL 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N+ + +  E    ++   E         ++FAT  G ++R   S+F 
Sbjct: 584 PHGKFRDKGIPIDNVSNYSSSEEQIVMICEEEQMRYSK---LLFATAQGMIKRVDGSEFQ 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   A KL   D +++V+  T+  +++L TK G  +RF  + +     + +VGVRG
Sbjct: 641 VSK-RTIAATKLQEEDRLVAVKVVTEYQNVVLQTKNGYFLRFLSADVPEKK-KAAVGVRG 698

Query: 727 ISLAKGDQV 735
           I L K D++
Sbjct: 699 IKLQKKDEL 707



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 6/170 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +   ++    +       DE   +   +         D        ++ S         
Sbjct: 552 KENKYIVHCMNIGKLCLFTDEGKMHQVKVLDLPHGKFRDKGIPIDNVSNYSSSEEQIVMI 611

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C+E +++   +L  + +G  KR    +F++S R          +K+ E   LVAV  V +
Sbjct: 612 CEEEQMRYSKLLFATAQGMIKRVDGSEFQVSKR------TIAATKLQEEDRLVAVKVVTE 665

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              ++L +  G  +R    ++    +A  GV      K + +  V    E
Sbjct: 666 YQNVVLQTKNGYFLRFLSADVPEKKKAAVGVRGIKLQKKDELEEVYLFEE 715


>gi|257068609|ref|YP_003154864.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
 gi|256559427|gb|ACU85274.1| DNA topoisomerase IV subunit A [Brachybacterium faecium DSM 4810]
          Length = 822

 Score =  615 bits (1585), Expect = e-173,   Method: Composition-based stats.
 Identities = 286/861 (33%), Positives = 416/861 (48%), Gaps = 101/861 (11%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +    + D+  E+ I  + +T EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 10  STTPPAGDDAVEETIVDIDVTSEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMS 69

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+   K +VK  R+ GEVMGK HPHG+ AIYDAL RMAQ +++RL L++G GNFGS+D
Sbjct: 70  EMGLRPEKGHVKSQRVVGEVMGKLHPHGDTAIYDALVRMAQSFNMRLPLVDGHGNFGSLD 129

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
              PAA RYTE RL  AA  + D L +D VD  PNYD    +P VL A+YPN+LVNG  G
Sbjct: 130 N-GPAAPRYTEARLAPAALLMTDSLDEDVVDMVPNYDNQLLQPEVLPAQYPNLLVNGASG 188

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL E +     +ID+P+ +L+ LM  + GPD PTG  I+G  GI++AY
Sbjct: 189 IAVGMATNMAPHNLVETIAAARHLIDHPEAELEELMRFVPGPDLPTGGRIVGLDGIRDAY 248

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS  +R  + IE  +  R+ IVVTE+PYQV    + EK+ + V+ K++  I D +D
Sbjct: 249 RTGRGSFKMRATTRIENVTSRRKGIVVTELPYQVGPERLAEKLRDAVQSKKVQGITDYQD 308

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +D   G R+V+ +K G   D +L QLY++T L+  F +N VAL   +P    L  +L+ 
Sbjct: 309 LTDRHHGLRLVLTVKSGFDPDAVLAQLYKFTPLEESFGINNVALVDGQPRTLGLKQMLEV 368

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           FV  R EVV RRT++ L K R R H++ GL +A+ ++DEV++I+R S + E AR  LMQ 
Sbjct: 369 FVGHRLEVVRRRTEHRLGKRRARLHLVEGLLLAIVDIDEVIQIVRQSDDAEIARTRLMQ- 427

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L++VQ   ILELRL RLT   + D+  E + L
Sbjct: 428 -------------------------VFDLTQVQAEYILELRLRRLTRFSQIDLEAERDDL 462

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED----CIVRE 536
             EI+   +IL S + L  ++ +EL +V  E    RRT ++E              +  E
Sbjct: 463 RREIERLEEILGSETVLRALVSEELAAVAAEHGDSRRTVLLEAAEKPAVVAGASLEVADE 522

Query: 537 DMVVTVSHLGYVKRVPLSV--YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
              V ++  G + RV       R   RG        +                 V   + 
Sbjct: 523 PCHVLLTGTGLIARVTGEEPVPREGPRGSHDVIVAGVHSTTRSE----------VGVVTD 572

Query: 595 LGFVYKEKVWRLPIGSPQARGKA------LINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G V +  V  LP  +P     +      L +++ L + E    ++   E + +     +
Sbjct: 573 RGRVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDLERDEHALGLIRLAEADIARGGG-I 631

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCV 706
              T+HG V+R +          G   + L   D ++ V      ++ D+   T   Q +
Sbjct: 632 ALGTRHGVVKRVQPEF---PRSDGFEIISLKDGDAVVGVVDLEDDEDLDLAFITSDAQLL 688

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            FP S +R   GR + GV GI LA G  V+S   +          +          +   
Sbjct: 689 HFPSSGVRP-QGRGAGGVAGIKLAAGAHVLSFGAIDVTAPADVVTVAGSSSTLPLLQT-- 745

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                                   G  K TS  +F    R+  G
Sbjct: 746 ----------------------------------------GSLKVTSLTEFPAKGRATAG 765

Query: 827 IRATDVSKINEIGALVAVFPV 847
           +R     +  +   L+  + V
Sbjct: 766 MRCHRFLRGEDT--LIGAWVV 784



 Score = 42.1 bits (97), Expect = 0.43,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 63/234 (26%), Gaps = 26/234 (11%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-RNS-----VGVRGISLA 730
            L+  DE   V            T  G   R          G R S      GV   + +
Sbjct: 516 SLEVADEPCHVLL----------TGTGLIARVTGEEPVPREGPRGSHDVIVAGVHSTTRS 565

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +    + +                    +     ++G T     +  +            
Sbjct: 566 E----VGVVTDRGRVLRLSVVDLPSLAPTHGAPSLAGGTRLADLIDLERDEHALGLIRLA 621

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           +    +   I   +  G  KR    +F  S+    G     +   + +  +V +    D 
Sbjct: 622 EADIARGGGIALGTRHGVVKRVQP-EFPRSD----GFEIISLKDGDAVVGVVDLEDDEDL 676

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           D    ++    L+  P + +R   R   GV     A    V+S   I  +   D
Sbjct: 677 DLAF-ITSDAQLLHFPSSGVRPQGRGAGGVAGIKLAAGAHVLSFGAIDVTAPAD 729


>gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
 gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1]
          Length = 754

 Score =  614 bits (1584), Expect = e-173,   Method: Composition-based stats.
 Identities = 254/749 (33%), Positives = 395/749 (52%), Gaps = 54/749 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   ++ +E+++ YL YA++ I+ R++PD+RDGLKPVHRRILF M  + ++ N  Y K
Sbjct: 6   EQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPNSPYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A YDA+ R+AQ++++R  L++GQGNFG++DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAAMRYTEA 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL+DL  DTVDF P YDGS +EPVVL AR+PN+L NG  GIAVGM+TN+P H
Sbjct: 126 RLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMSTNVPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRG 252
           N+GE++D C+ +I  P+  ++ LM+ +  PDFPTG +++         Y+ GRGS+ +R 
Sbjct: 186 NVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRGSLRLRA 245

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E       QIVVTEIPYQV K+ ++E+IA+LV +++   + ++RDESD    R+V+
Sbjct: 246 RWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDE-NLRIVL 304

Query: 313 ELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
           E + R    ++I++ L++++ L+S  S N+  +  G++PE   L GIL+ ++  R  V  
Sbjct: 305 EPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDHRFVVHT 364

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K R+R H+L    I   N+DEV+ II+ + +P                    
Sbjct: 365 RRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPA------------------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L E+Q  AIL +RL  L  L    IR E+  L         +
Sbjct: 406 ----------PVLMARFSLDEIQAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAM 455

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYV 548
           L+    +   I+ EL + + E    RRT I   + D+    ED + +E + V +S +G+V
Sbjct: 456 LADDKIMWKAIRDELKATRKEFADVRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWV 515

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   +A +        +  + +D +   F   T+ SV F S  G ++      LP 
Sbjct: 516 --------KANKGHDVNTEVLRFKGDDLLLRSFPCYTNQSVSFISQSGKLFTILASNLPA 567

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     G+ L ++  L+ G+R+   +P   ++        +  T+ G   R K  D I  
Sbjct: 568 GKGF--GEPLTSMFDLDGGDRVLWALPVDPEQEY------LLITRLGQGFRVKGVDLIAN 619

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R GK  + L S D+ L +        +   ++  + + FPI    + A     GVR   
Sbjct: 620 QRKGKQLITLKSGDQPLHLHPVKGP-WVGSISRSRRLLIFPIEQFPLMA--KGKGVRVQK 676

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKH 757
           L   + V+ +      +    +     KH
Sbjct: 677 LGADEVVVDVTTFTDEEGFVLDSGKKTKH 705



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI-----GALVAVFPVND 849
             EQ  L ++  G G R    D   + R GK +                G  V       
Sbjct: 594 DPEQEYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGPWVGS----- 648

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                 +S    L+  P+ +  + ++  KGV +     DE VV V    + E 
Sbjct: 649 ------ISRSRRLLIFPIEQFPLMAKG-KGVRVQKLGADEVVVDVTTFTDEEG 694


>gi|183601381|ref|ZP_02962751.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191120|ref|YP_002968514.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196526|ref|YP_002970081.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218987|gb|EDT89628.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249512|gb|ACS46452.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240251080|gb|ACS48019.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794109|gb|ADG33644.1| DNA topoisomerase IV subunit A [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 891

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 281/933 (30%), Positives = 430/933 (46%), Gaps = 125/933 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  
Sbjct: 12  DPRQVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLP 71

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 72  TRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG 
Sbjct: 191 TNMATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGV 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R  +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +D   
Sbjct: 251 VTTRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHN 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R 
Sbjct: 311 GTRIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRR 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R      
Sbjct: 371 GVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++ +E + L   I E
Sbjct: 425 --------------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------------------------- 520
              IL S + L G++  E+        TPRRT +                          
Sbjct: 465 LERILGSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALD 524

Query: 521 -----------------VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
                                 +  +   I  E  V+ +S  G + R+ +          
Sbjct: 525 AARHAENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDA--LTIWAK 582

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--IGSPQARGKALINI 621
           +G        +D +  L    T       +S G +    V  LP    +        I  
Sbjct: 583 RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEA 642

Query: 622 LSLNQGERITTIMP-------------FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             L      T  +P               +D+++     V   T++G V+R        +
Sbjct: 643 TELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTM 702

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  + L   DE+L       ++  +  +     + +    +R   GR + G+ GI 
Sbjct: 703 --DSWSIIDLKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRTAAGMAGIH 759

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA G  V+S A+V HAD ++ +               +        +             
Sbjct: 760 LADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDA----------- 808

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAVFP 846
                       L  +E G  K T    +    R+  G+R+    K       A V  +P
Sbjct: 809 ------------LPGTENGAAKVTPLELYPTKGRATGGVRSQRFLKGQNTLIRACVGSYP 856

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
                 ++  +  G  + +P  ++R   R   G
Sbjct: 857 ------LLAATSGGHPVELPAPDMR---RDGSG 880



 Score = 46.3 bits (108), Expect = 0.027,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 44/256 (17%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E         E  ++  +  G   R  I A+ ++A R +           D ++S+    
Sbjct: 547 ETAEALRIEDEPCVIALSASGLIARMSIDALTIWAKRGAH---TEKREPDDVIVSLMPAR 603

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          ++    L + +     SL         ++     +    E+ I T
Sbjct: 604 TRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIAT 663

Query: 803 V---------------------SEKGFGKR------TSSYDFRISNRSGKGIRATDVSKI 835
           +                     +  G  KR      T+   + I           D+   
Sbjct: 664 LALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMDSWSI----------IDLKDG 713

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +E+  LVA    +D+D+ + VS   +L+      +R   R   G+     A    V+S  
Sbjct: 714 DEL--LVAADA-HDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCA 770

Query: 896 RIRESEIV-DEAESTE 910
            +  +++   +AE  +
Sbjct: 771 VVAHADVEWHDAEHDD 786


>gi|146320614|ref|YP_001200325.1| DNA topoisomerase IV subunit A [Streptococcus suis 98HAH33]
 gi|253751560|ref|YP_003024701.1| topoisomerase IV subunit A [Streptococcus suis SC84]
 gi|145691420|gb|ABP91925.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 98HAH33]
 gi|251815849|emb|CAZ51459.1| topoisomerase IV subunit A [Streptococcus suis SC84]
          Length = 817

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 283/887 (31%), Positives = 441/887 (49%), Gaps = 86/887 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 406 ----------KISYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNAS-----TLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR- 670
           +  G+ L   L           + F E   ++        TK+G ++R +  +F      
Sbjct: 571 KDIGEHLSQTL---MNFDTNEEIIFAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTY 627

Query: 671 --SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   KL   ++++   +    +DI+L T+ G  +RF I  +    G  + G + ++
Sbjct: 628 KSKSTKYAKLKDAEDVVITVSPVVLDDIMLMTEKGYALRFNIEEV-PIIGAKAAGAKAVN 686

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L   D V +  I   +      +   +K M+ +   ++   +    +  +   + +    
Sbjct: 687 LKDEDVVAAAFISNTSSVYLLTQRGSLKRMATEEIPVTSRAKRGLQVLRELKAKPHRVFA 746

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  +  F L  +                                            
Sbjct: 747 AGPVLTDQGDFDLFSTAN------------------------------------------ 764

Query: 849 DND---QII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++D   QI+ + S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 765 EDDTTSQILHVQSKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 72/545 (13%), Positives = 144/545 (26%), Gaps = 92/545 (16%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  R +    KA  +  V+  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  DS      +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIIIARSKFDKEKAEKRLHIVEGLIRVVSILDE---VIALIRASENKADAKENLKISYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 +           T          ++   
Sbjct: 412 SEEQAEAIVTLQLYRLTNTDIVTL--------ENEEAALREQIQTLAAIIGDERTMFNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     Q           L++ +     +              V  TK G ++R   
Sbjct: 464 KKELREVKKQFGNP------RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI---SAIRVFAGR 719
             F          M     D+++ ++       +LL T LG  +  P+   + IR     
Sbjct: 518 RSFNASTLEE---MGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIG 574

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             +    ++    +++I   +V + +                                  
Sbjct: 575 EHLSQTLMNFDTNEEIIFAELVENFE---------------------------------- 600

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK----- 834
                            E     V++ G  KR    +F          R           
Sbjct: 601 -----------------EGTYFAVTKYGQIKRVERKEFTP-------WRTYKSKSTKYAK 636

Query: 835 -INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +    ++ V PV  +D I+L+++KG  +R  + E+ I      G    +   ++ VV+
Sbjct: 637 LKDAEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGAKAAGAKAVNLKDED-VVA 694

Query: 894 VERIR 898
              I 
Sbjct: 695 AAFIS 699



 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +   +    E     L ++E+  ++V++ G+ KRTS   F  S          +     +
Sbjct: 481 ELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNAS--------TLEEMGKRD 532

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR---IASRATKGVVIFSTAKDERV 891
              L+ +        ++L ++ G +I  PV    +IR   I    ++   + +   +E +
Sbjct: 533 DDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQ--TLMNFDTNEEI 590

Query: 892 VSVERIRESEI 902
           +  E +   E 
Sbjct: 591 IFAELVENFEE 601


>gi|283783172|ref|YP_003373926.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
 gi|283440999|gb|ADB13465.1| DNA gyrase/topoisomerase IV, A subunit [Gardnerella vaginalis
           409-05]
          Length = 887

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 276/941 (29%), Positives = 449/941 (47%), Gaps = 134/941 (14%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  
Sbjct: 13  DPRKVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA
Sbjct: 73  DHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMA
Sbjct: 132 SRYTEARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              R  +HIE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +D   
Sbjct: 252 FTTRSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R 
Sbjct: 312 GTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +L++       
Sbjct: 372 TVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIK------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E + L  +I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------ 534
              ILSS ++L  ++  ++ S   + DTPRRT +++   D                    
Sbjct: 466 LNQILSSEAKLDNVVIADMDSAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIK 525

Query: 535 --------------------------------------REDMVVTVSHLGYVKRVPLSVY 556
                                                  E   V +S  G + R      
Sbjct: 526 AVQSANKITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIART----- 580

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            +        S            +F  +T ++    +S G +    V  LP  + +    
Sbjct: 581 -SIAVLEHWNSHNNNVFNTPCKTMFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKP 639

Query: 617 ALINI----------LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           AL+N                  R   ++     ++S N   +   T++G V+R       
Sbjct: 640 ALLNHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATPLAIGTRNGVVKRWNFEAPT 699

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +       + L   D +++       + ++  +     + F    +R   GR + G+ G
Sbjct: 700 TM--DSWSIIDLKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAG 756

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+G +V + A+V     ++          SA   ++     +  +L           
Sbjct: 757 IRLAEGTKVATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPG--------- 807

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GALVAV 844
                            +E G  K T    +    R+  G+R+    K  +    A V  
Sbjct: 808 -----------------TENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDTLIHAYVGY 850

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           +P+        V++ G+ + +P  ++R   R   G  + S 
Sbjct: 851 YPLQ------AVTEGGSNVELPKPDMR---RDASGTELVSL 882



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++ H            K       + + +    T   +    E  +S       +     
Sbjct: 622 VLAHVADLPQLNYEEGKPALLNHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATP- 680

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +   +  G  KR +      +      + +  +  + +   ++A  P  DND+++ +S  
Sbjct: 681 LAIGTRNGVVKRWNFEA-PTT------MDSWSIIDLKDDDTVIAAAPAKDNDRLVFISSD 733

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
            +L+     ++R   R   G+     A+  +V +   + E  I    +E E+
Sbjct: 734 SSLLTFDAKQVRPQGRTAGGMAGIRLAEGTKVATFAVVPEKSIEWHYEEGEN 785


>gi|298253939|ref|ZP_06977526.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
 gi|297532082|gb|EFH71057.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis 5-1]
          Length = 887

 Score =  614 bits (1583), Expect = e-173,   Method: Composition-based stats.
 Identities = 266/892 (29%), Positives = 429/892 (48%), Gaps = 123/892 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  
Sbjct: 13  DPRKVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA
Sbjct: 73  DHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMA
Sbjct: 132 SRYTEARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              R  +HIE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +D   
Sbjct: 252 FTTRSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R 
Sbjct: 312 GTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +L++       
Sbjct: 372 TVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIK------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E + L  +I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------ 534
              ILSS ++L  ++  ++ S   + DTPRRT +++   D                    
Sbjct: 466 LNQILSSEAKLDNVVIADMDSAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIK 525

Query: 535 --------------------------------------REDMVVTVSHLGYVKRVPLSVY 556
                                                  E   V +S  G + R      
Sbjct: 526 AVQSANKITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIART----- 580

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            +        S            +F  +T ++    +S G +    V  LP  + +    
Sbjct: 581 -SIAVLEHWNSHNNNVFNTPCKTMFATTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKP 639

Query: 617 ALINI----------LSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           AL+N                  R   ++     ++S N   +   T++G V+R       
Sbjct: 640 ALLNHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATPLAIGTRNGVVKRWNFEAPT 699

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +       + L   D +++       + ++  +     + F    +R   GR + G+ G
Sbjct: 700 TM--DSWSIIDLKDDDTVIAAAPAKDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAG 756

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+G +V + A+V     ++          SA   ++     +  +L           
Sbjct: 757 IRLAEGAKVATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPG--------- 807

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +E G  K T    +    R+  G+R+    K  + 
Sbjct: 808 -----------------TENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDT 842



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++ H            K       + + +    T   +    E  +S       +     
Sbjct: 622 VLAHVADLPQLNYEEGKPALLNHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATP- 680

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +   +  G  KR +      +      + +  +  + +   ++A  P  DND+++ +S  
Sbjct: 681 LAIGTRNGVVKRWNFEA-PTT------MDSWSIIDLKDDDTVIAAAPAKDNDRLVFISSD 733

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
            +L+     ++R   R   G+     A+  +V +   + E  I    +E E+
Sbjct: 734 SSLLTFDAKQVRPQGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWHYEEGEN 785


>gi|152965512|ref|YP_001361296.1| DNA topoisomerase IV subunit A [Kineococcus radiotolerans SRS30216]
 gi|151360029|gb|ABS03032.1| DNA topoisomerase (ATP-hydrolyzing) [Kineococcus radiotolerans
           SRS30216]
          Length = 826

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 290/843 (34%), Positives = 412/843 (48%), Gaps = 95/843 (11%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I  + +  EMQ ++L YA +VI  RA+PD RDGLKPV RRIL+ M  MG+   + 
Sbjct: 12  DVPERIVDIDVEQEMQGAFLEYAYSVIYSRALPDARDGLKPVQRRILYMMQDMGLVPTRA 71

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ GEVMGK HPHG+ AIYDAL R AQ +++RL L++G GNFGS+D   PAA+RY
Sbjct: 72  HVKSARVVGEVMGKLHPHGDVAIYDALVRQAQPFTMRLPLVDGHGNFGSLDA-GPAAQRY 130

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+  AA  +   L +D VDF PNYD    EP VL A +PN+LVNG  GIAVGMATN+
Sbjct: 131 TEARMAPAALLMTTGLDEDVVDFVPNYDDRLTEPGVLPAAFPNLLVNGASGIAVGMATNM 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EVV+    ++ +PD DL ALM  + GPDFPTG  ++G  GI++AYATGRGS   
Sbjct: 191 PPHNLVEVVNAARHLLKHPDADLPALMRFVPGPDFPTGGRVVGLEGIRDAYATGRGSFRT 250

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYR 309
           R    IEK    R+ IVVTE+PY      ++EKIA+ V+ K++  +AD+ D SD   G R
Sbjct: 251 RASVRIEKIGR-RQGIVVTELPYGAGPERLIEKIADNVKNKKLQGVADVTDLSDRHHGMR 309

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K G   + +L QLYR T ++  F +N VAL   +P    L  +L+ F+  R +VV
Sbjct: 310 LVIEVKNGFVPEAVLEQLYRLTPMEESFGINNVALVEGQPRTLGLKELLEVFIGHRVDVV 369

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA+DR H++ GL  A+ ++DEV+ I+R S + + A   L +R         
Sbjct: 370 RRRTRFRLGKAQDRLHLVDGLLTAIVDIDEVIAIVRSSDDAQAALARLTER--------- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE Q R IL+++L RLT   R ++  E   L   I +   
Sbjct: 421 -----------------FSLSEAQGRYILDMQLRRLTRFSRIELEREQAELRATIAQLQA 463

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV----REDMVVTVSHL 545
           IL    RL G++  EL +V  E  TPRRT ++                  +   V +S  
Sbjct: 464 ILDDEGRLRGLVGDELAAVAAEHGTPRRTVLLTSSGPASGAAPTQLEIGDDPCWVLLSSA 523

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G + R                +       D V      +    V   +S G + +  V  
Sbjct: 524 GLLAR--------TGSAEPLGTEGRRSRHDLVVAAAPATARGHVGVLTSAGRLVRVPVLD 575

Query: 606 LPIGSPQARGKALI------NILSLNQGERITTIMPFPE-DESSWNNLYVVFATKHGNVR 658
           LP+    A    L         ++  +GER  TI+P P       ++     AT  G V+
Sbjct: 576 LPVLPETAGRPNLAGGTGVKEFVTFGKGERALTIVPLPVTGVEDPDDPGFALATAGGVVK 635

Query: 659 RNKLSDFIQINRSGKIAMK---LDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIR 714
           R  L           I +K      RDE++ +V   T E +++  T   Q +RFP + +R
Sbjct: 636 RVVLDPLGNREEVEVITLKDLGPRQRDEVVAAVGLTTGEEELVFVTSDAQLLRFPAALVR 695

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR + G+ GI L+ G +V++M  V     D           S               
Sbjct: 696 P-QGRAAAGMAGIKLSAGARVVAMTAVAPDAVDPVVVTVAGDSTSG-------------- 740

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                       VS+ G  K T   ++    R+  G+R    ++
Sbjct: 741 ----------------------------VSQLGSVKVTPLAEYPPKGRATGGVRCHRFAR 772

Query: 835 INE 837
             +
Sbjct: 773 GED 775



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 4/156 (2%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           D  +             +G  E +T  K + ++          E      F L  +  G 
Sbjct: 575 DLPVLPETAGRPNLAGGTGVKEFVTFGKGERALTIVPLPVTGVEDPDDPGFAL-ATAGGV 633

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF-PVNDNDQIILVSDKGTLIRVPV 867
            KR       + NR    +         +   +VA        ++++ V+    L+R P 
Sbjct: 634 VKRVVLD--PLGNREEVEVITLKDLGPRQRDEVVAAVGLTTGEEELVFVTSDAQLLRFPA 691

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             +R   RA  G+     +   RVV++  +    + 
Sbjct: 692 ALVRPQGRAAAGMAGIKLSAGARVVAMTAVAPDAVD 727



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 34/278 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G + R   ++ +               D +++    T    + + T  G
Sbjct: 513 DDPCWVLLSSAGLLARTGSAEPLGTEGRRSR------HDLVVAAAPATARGHVGVLTSAG 566

Query: 704 QCVRFPISAIRVFA---GR----NSVGVR-GISLAKGDQVISMA------IVLHADADYD 749
           + VR P+  + V     GR       GV+  ++  KG++ +++       +    D  + 
Sbjct: 567 RLVRVPVLDLPVLPETAGRPNLAGGTGVKEFVTFGKGERALTIVPLPVTGVEDPDDPGFA 626

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                          +    E       D              L   E+ ++ V+     
Sbjct: 627 LATAGGVVKRVVLDPLGNREEVEVITLKDLGPRQRDEVVAAVGLTTGEEELVFVTSDAQL 686

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIIL---------VSD 858
            R  +   R   R+  G+    +S       +VA+  V  +  D +++         VS 
Sbjct: 687 LRFPAALVRPQGRAAAGMAGIKLSAG---ARVVAMTAVAPDAVDPVVVTVAGDSTSGVSQ 743

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            G++   P+ E     RAT GV     A+ E V+ +  
Sbjct: 744 LGSVKVTPLAEYPPKGRATGGVRCHRFARGEDVLLLAW 781


>gi|146318418|ref|YP_001198130.1| DNA topoisomerase IV subunit A [Streptococcus suis 05ZYH33]
 gi|145689224|gb|ABP89730.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Streptococcus suis 05ZYH33]
          Length = 817

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 284/888 (31%), Positives = 441/888 (49%), Gaps = 88/888 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEMAGYLLADIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   L+ LME + GPDFPTGA+I G   IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAVVYMIDHPTAKLEKLMEFLPGPDFPTGAIIQGADEIKKAYETGKGRVVVRSR 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    ++QIV+TEIPY+VNKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 CEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRTGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ +    ILN LY+YT LQ  ++ NMVA++ + P +  L  IL +++A R E+++ R+
Sbjct: 302 LKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRREIIIARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+   KA  R H++ GL   V+ LDEV+ +IR S N   A+  L                
Sbjct: 362 KFDKEKAEKRLHIVEGLIRVVSILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   SE Q  AI+ L+L RLT      + NE  +L  +I+    I+  
Sbjct: 406 ----------KISYEFSEEQAEAIVTLQLYRLTNTDIVTLENEEAALREQIQTLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK +   PR + + +     +++    IV E+  V+V+  GY+KR 
Sbjct: 456 ERTMFNLMKKELREVKKQFGNPRLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  L    T   +L F++LG V    V  L     
Sbjct: 516 SPRSFNAS-----TLEEMGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ L   L           + F E   ++        TK+G ++R +  +F      
Sbjct: 571 KDIGEHLSQTL---MNFDTNEEIIFAELVENFEEGTYFAVTKYGQIKRVERKEFTPWRTY 627

Query: 672 GKIAMKLDS----RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
              + K        D +++V      +DI+L T+ G  +RF I  +    G  + G + +
Sbjct: 628 KSKSTKYAKLTDAEDVVITVSPVV-LDDIMLMTEKGYALRFNIEEV-PIIGAKAAGAKAV 685

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D V +  I   +      +   +K M+ +   ++   +    +  +   + +   
Sbjct: 686 NLKDEDVVAAAFISNTSSVYLLTQRGSLKRMATEEIPVTSRAKRGLQVLRELKAKPHRVF 745

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                L  +  F L  +                                           
Sbjct: 746 AAGPVLTDQGDFDLFSTAN----------------------------------------- 764

Query: 848 NDND---QII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++D   QI+ + S  G L  V V ++ ++ R + G  I  T  DE V
Sbjct: 765 -EDDTTSQILHVQSKTGKLYEVDVTQLSLSERTSNGSFISDTISDEEV 811



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 73/542 (13%), Positives = 148/542 (27%), Gaps = 86/542 (15%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  R +    KA  +  V+  +   V     V +I     N +      ++   + +
Sbjct: 235 RVVVRSRCEIEQLKAGKKQIVITEIPYEVNKAVLVKKIDDVRVNNKVPGIAEVRDESDRT 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  DS      +     +++Q      ++ +       +G   I +   +   
Sbjct: 295 GLRIAIELKKDSDEQTILNYLYKYTDLQINYNFNMVAIDNFTPRQVGLQKILSSYIAHRR 354

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           EI               +   E L     +       I          D      +    
Sbjct: 355 EIIIARSKFDKEKAEKRLHIVEGLIRVVSILDE---VIALIRASENKADAKENLKISYEF 411

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S       V L +YR                 +           T          ++   
Sbjct: 412 SEEQAEAIVTLQLYRLTNTDIVTL--------ENEEAALREQIQTLAAIIGDERTMFNLM 463

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     Q           L++ +     +              V  TK G ++R   
Sbjct: 464 KKELREVKKQFGNP------RLSELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSP 517

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI---SAIRVFAGR 719
             F          M     D+++ ++       +LL T LG  +  P+   + IR     
Sbjct: 518 RSFNASTLEE---MGKRDDDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIG 574

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
             +    ++    +++I   +V + +                                  
Sbjct: 575 EHLSQTLMNFDTNEEIIFAELVENFE---------------------------------- 600

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKIN 836
                            E     V++ G  KR    +F   R      K  +   ++  +
Sbjct: 601 -----------------EGTYFAVTKYGQIKRVERKEFTPWRTYK--SKSTKYAKLT--D 639

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               ++ V PV  +D I+L+++KG  +R  + E+ I      G    +   ++ VV+   
Sbjct: 640 AEDVVITVSPVVLDD-IMLMTEKGYALRFNIEEVPIIGAKAAGAKAVNLKDED-VVAAAF 697

Query: 897 IR 898
           I 
Sbjct: 698 IS 699



 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 16/131 (12%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +   +    E     L ++E+  ++V++ G+ KRTS   F  S          +     +
Sbjct: 481 ELQDQAETIEIDTASLIVEEETFVSVTKAGYIKRTSPRSFNAS--------TLEEMGKRD 532

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR---IASRATKGVVIFSTAKDERV 891
              L+ +        ++L ++ G +I  PV    +IR   I    ++   + +   +E +
Sbjct: 533 DDQLIFLQNAKTTQHLLLFTNLGNVIYRPVHELTDIRWKDIGEHLSQ--TLMNFDTNEEI 590

Query: 892 VSVERIRESEI 902
           +  E +   E 
Sbjct: 591 IFAELVENFEE 601


>gi|229820420|ref|YP_002881946.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
 gi|229566333|gb|ACQ80184.1| DNA topoisomerase (ATP-hydrolyzing) [Beutenbergia cavernae DSM
           12333]
          Length = 819

 Score =  614 bits (1582), Expect = e-173,   Method: Composition-based stats.
 Identities = 275/862 (31%), Positives = 399/862 (46%), Gaps = 98/862 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M           ++ I  + + +EMQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MARRSAPP--PADERIVDIDVAEEMQDSFLEYAYSVIYARALPDARDGLKPVQRRILYQM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+  ++ +VK AR+ GEVMGK HPHG+ AIYDAL RMAQ +SLRL L++G GNFGS+
Sbjct: 59  ADMGLRPDRGHVKSARVVGEVMGKLHPHGDTAIYDALVRMAQAFSLRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  +   L +D VDF PNYD    +P VL +  PN+LVNG  
Sbjct: 119 D-DGPAAPRYTEARLAPAALVMTGGLDEDVVDFVPNYDNQLTQPEVLPSAMPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EV+     +I +PD DL+ALM  + GPD P G  I+G  G+++A
Sbjct: 178 GIAVGMATNMPPHNLVEVIAAARHLIAHPDADLEALMRFVPGPDLPGGGKIVGLDGVRDA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGS   R  + +E  +  R  IVVTE+PY V    + EKIAE VR K++  +A ++
Sbjct: 238 YVSGRGSFRTRATARVENLTPRRRGIVVTELPYLVGPERVTEKIAEAVRSKKVQGVAGVQ 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D + G R+VIE+K G + + +L QLYR T L+  F +N VAL G +P    L  +L 
Sbjct: 298 DLTDRQHGLRLVIEVKSGFNPEAVLEQLYRATPLEESFGINNVALVGGQPRTMGLRELLT 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  R  V  RR++Y L +  +R H++ GL IA+A++DEV+ +IR S +   AR  L+ 
Sbjct: 358 VYVEHRLVVTRRRSEYRLRRRSERLHLVEGLLIAIADIDEVIAVIRSSDDAAQARERLVA 417

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LS  Q   ILEL+L RLT   R ++ +E + 
Sbjct: 418 --------------------------VFDLSTPQADYILELQLRRLTKFSRIELTSERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI------ 533
           L  EI E  ++L   +RL  ++  EL  V ++  TPRRT ++E                 
Sbjct: 452 LQREIAELTELLGDPARLRALVSDELAQVANQHGTPRRTVLLESAGAPAAAAAAAPTSGR 511

Query: 534 --------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
                         V +S  G + R             +          D +      + 
Sbjct: 512 AGAVPLEIPDTPCWVLLSATGLLAR--------TGDDARPVREGRRAAHDAILGSVPATA 563

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWN 644
              V   +S G + +  V   P   P     +L   + +           P        +
Sbjct: 564 RGEVGLVTSRGRIVRVNVLDAPALPPTDGPPSLSGGVGVGELVALEPGERPLTLAALGPD 623

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              +   T  G V+R                + L   D+++   T   +++++  T   Q
Sbjct: 624 APALALGTASGVVKRVSPEAPA--KGDAWEVIALKDGDQVVGAATAADDDEVVFVTSDAQ 681

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RF  +++R   GR + G+ G+ LA   + ++ A V H D      +       A    
Sbjct: 682 LLRFRAASVRP-QGRAAAGMAGVRLAGDVRAVAFAAVAHDDVSTAVVVTVAGSSDALPG- 739

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                                  +  G  K T    F    R  
Sbjct: 740 ---------------------------------------TAAGSAKVTPLDRFPAKGRGT 760

Query: 825 KGIRATDVSKINEIGALVAVFP 846
            G+RA    +     A+V  + 
Sbjct: 761 GGVRAQRFLRGE--DAVVLAWI 780



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 22/191 (11%)

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS-------MAIVLHADADYDERICYMKHMSAQ 761
             + +    G ++  VR    A  D ++          + L        R+  +   +  
Sbjct: 529 SATGLLARTGDDARPVREGRRAAHDAILGSVPATARGEVGLVTSRGRIVRVNVLDAPALP 588

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                        +    ++E          L      +   +  G  KR S        
Sbjct: 589 PTDGPPSLSGGVGVGELVALEPGERPLTLAALGPDAPALALGTASGVVKRVSPEA----- 643

Query: 822 RSGKG----IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              KG    + A       +   +V      D+D+++ V+    L+R     +R   RA 
Sbjct: 644 -PAKGDAWEVIALK-----DGDQVVGAATAADDDEVVFVTSDAQLLRFRAASVRPQGRAA 697

Query: 878 KGVVIFSTAKD 888
            G+     A D
Sbjct: 698 AGMAGVRLAGD 708


>gi|81300503|ref|YP_400711.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
 gi|81169384|gb|ABB57724.1| DNA topoisomerase IV subunit A [Synechococcus elongatus PCC 7942]
          Length = 858

 Score =  613 bits (1581), Expect = e-173,   Method: Composition-based stats.
 Identities = 288/947 (30%), Positives = 448/947 (47%), Gaps = 145/947 (15%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I  +       I   ++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTDSIQFNG---ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + K AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 58  HELGLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   +H  LL+++G++TVDF  N+D S QEP VL A+ P +L+NG 
Sbjct: 118 DNDPPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VD  +A+ID P +    L+  + GPDFPTG  ++G  GI +
Sbjct: 178 SGIAVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           AY  GRGSI +RG++ IE+    + +     I+VTE+PYQV+KA  +EK+A+LV + ++ 
Sbjct: 238 AYLEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQ 297

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IAD+RDESDR+G RVVIEL+R A AD +L QLY+ T+LQS F   ++A+   +P++ +L
Sbjct: 298 GIADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++FRE  + RR  + L +   R  +L GL  ++++LD ++ I+R SP+  TAR
Sbjct: 358 KQLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTAR 417

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L                               L+E Q  A+L + + R+T L ++ ++
Sbjct: 418 ARL--------------------------QVHFDLNERQADAVLSMPMRRITSLEQEQLQ 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E  +L  +      +L  R  LL  +K++L  +K    +PRRTR+ E   +       V
Sbjct: 452 QEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPRRTRLPEIPPEAIAAPRQV 511

Query: 535 REDMVVTVSHL-----GYVKRVPLSVYRAQRRGGKGRSGVVMR----------------- 572
               V  +S       G ++   +               +  R                 
Sbjct: 512 TAP-VAPISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQL 570

Query: 573 --------------------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                                 DF   L        +L  ++ G  Y+  +  +  G   
Sbjct: 571 QAASATELEPWLKAKSGAQERTDFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG--- 627

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                + N+L   +               +     ++  +  G V+R  L++  +I+  G
Sbjct: 628 ----PIANLLPTGRQSTAIAATLLL--PLASEERSLLLLSSQGRVKRLALTELAEISNRG 681

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAK 731
              +KL   + I +   C  + ++LL +  G+ +R    +    A R S G  R + L +
Sbjct: 682 LQLLKLAEEEIIQAACLCAPQQEVLLGSSGGRLLR-LSLSELPLASRISRGQPRLLRLRE 740

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G+Q +    +                                                  
Sbjct: 741 GEQPLGCLSLPSG----------------------------------------------- 753

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 Q +L VS  G  KR      R+      G  A   +  ++   L+A+ P     
Sbjct: 754 ------QDLLLVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFT--DKRDRLIALLPAPSQG 805

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             I  SD+    R  ++ I +     +G  +F+    E + S   + 
Sbjct: 806 LAIFASDQRLWQR-SISTIAVTGTDAEGQTLFNLRSTETLQSATTLE 851


>gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
 gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM
           15436]
          Length = 805

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 270/856 (31%), Positives = 408/856 (47%), Gaps = 100/856 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +  +     + I  + ++DEM+ S+L YA +VI  RA+PD RDG KPV RRILF M
Sbjct: 1   MSTTVSPT---VAENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+   K +VK   + GEVMGK HPHG+AAIYDAL R+AQ ++LRL L++G GNFGS+
Sbjct: 58  SQMGLRPEKGHVKSQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSL 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  L+ +L +D VDF PNYD    +P VL A +P +LVNG  
Sbjct: 118 D-DGPAAARYTEARLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAM 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNI  HNLGEVV     +IDNP+     LM  + GPD P G +I+G  GI+ A
Sbjct: 177 GIAVGMATNIAPHNLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIVGLDGIREA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+   R    +E+ +  ++ +V+TE+PY V    ++EKI E V  K++  I+++ 
Sbjct: 237 YETGRGAFKTRAKITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVS 296

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           + +D   G R+V+E+K G +   +++QL+++T L+  FS+N VAL   +P    L  +L+
Sbjct: 297 NLTDRHHGVRLVVEVKNGFNPQAVMSQLFKHTPLEDNFSINAVALVDGRPMTLGLKQMLE 356

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V  R  V+ RR+++ L KA DR H++ GL +A+ ++D+V+ IIR S + ++AR  LM 
Sbjct: 357 VYVKHRLSVIERRSQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLM- 415

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+Q   IL LRL RLT   R ++  E   
Sbjct: 416 -------------------------DVFELSEIQADHILSLRLRRLTKFSRIELETEQAE 450

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED-------- 531
           L  +I+    IL S   L  +++ EL+ V   L TPRRT ++       +          
Sbjct: 451 LLSQIEGLRHILGSEQALRTVVRDELVEVSKRLATPRRTVLLSADPQQVETAGKAAAVPL 510

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-DFVTDLFIVSTHTSVL 590
            I    + V ++  G + RV          G +       R   D        +  + V 
Sbjct: 511 EIPDAPVQVVLTANGGLIRV---------DGAEPLEKTESRGIWDTYRVAISATARSQVG 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              + G +++ +V  LP     A   +    +S    + + T +          +    F
Sbjct: 562 LIDASGMLHRVEVVDLPEVPRSASNPSFAGAIS--ASQLLGTEVCPVGLIHVDGDDISGF 619

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            TK G ++R +              + L   DE+L    C  E +I++ T   Q +R P 
Sbjct: 620 VTKLGQIKRMRPDF---AKADSFETILLTDGDEVLFAAPCPDEAEIVMVTSDAQLLRTPA 676

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + IR   GR + GV G+ + +G +++    V    A           +  + +       
Sbjct: 677 AKIRP-QGRVAGGVVGMVIGEGARLLEANFVPSEGAQIVTVAAAADGLFGEMQSS----- 730

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                                  K +    + +  R+ +G+R  
Sbjct: 731 --------------------------------------VKVSDLEIYPVKGRATQGVRCH 752

Query: 831 DVSKINEIGALVAVFP 846
              K      LV    
Sbjct: 753 RFLKSES--ELVMARV 766



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 18/104 (17%)

Query: 802 TVSEKGFGKRT-----SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            V++ G  KR       +  F              ++       ++   P  D  +I++V
Sbjct: 619 FVTKLGQIKRMRPDFAKADSFE----------TILLTDG---DEVLFAAPCPDEAEIVMV 665

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +    L+R P  +IR   R   GVV     +  R++    +   
Sbjct: 666 TSDAQLLRTPAAKIRPQGRVAGGVVGMVIGEGARLLEANFVPSE 709



 Score = 45.2 bits (105), Expect = 0.057,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 84/266 (31%), Gaps = 35/266 (13%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T +G + R   ++ ++   S  I       D      + T  + + L    G   R 
Sbjct: 519 VVLTANGGLIRVDGAEPLEKTESRGI------WDTYRVAISATARSQVGLIDASGMLHRV 572

Query: 709 PISAIRVFAGRNSV-----GVRGISLAKGDQV--ISMAIVLHADADYDERICYMKHMSAQ 761
            +  +     R++      G    S   G +V  + +  V   D                
Sbjct: 573 EVVDLPEVP-RSASNPSFAGAISASQLLGTEVCPVGLIHVDGDDISGFVTKLGQIKRMRP 631

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
               +   E I     D        E         E  I+ V+      RT +   R   
Sbjct: 632 DFAKADSFETILLTDGD--------EVLFAAPCPDEAEIVMVTSDAQLLRTPAAKIRPQG 683

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK-----GTLIR-VPVNEI---RI 872
           R   G+    + +   +  L A F  ++  QI+ V+       G +   V V+++    +
Sbjct: 684 RVAGGVVGMVIGEGARL--LEANFVPSEGAQIVTVAAAADGLFGEMQSSVKVSDLEIYPV 741

Query: 873 ASRATKGVVIFS-TAKDERVVSVERI 897
             RAT+GV        +  +V + R+
Sbjct: 742 KGRATQGVRCHRFLKSESELV-MARV 766


>gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 501

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 262/494 (53%), Positives = 348/494 (70%), Gaps = 9/494 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIA 486

Query: 486 ECLDILSSRSRLLG 499
           E L IL S  RL+ 
Sbjct: 487 ELLHILGSADRLME 500


>gi|167758062|ref|ZP_02430189.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
 gi|167663959|gb|EDS08089.1| hypothetical protein CLOSCI_00400 [Clostridium scindens ATCC 35704]
          Length = 745

 Score =  612 bits (1579), Expect = e-173,   Method: Composition-based stats.
 Identities = 255/728 (35%), Positives = 400/728 (54%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   QDSQIIRTEYSDVMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLAKITQDAYLADLDKDIVDFMPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV++   A + N DI    LM+ I+GPDFPTG +++ +  + N Y  G G I I
Sbjct: 182 PTHNLGEVIEAVKAYMKNDDISTKQLMKYIKGPDFPTGGIVVNKDELLNIYEAGSGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG   +E+  G + ++V+TEIPY +  A + + + +   LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEEMKGGKNRLVITEIPYTMIGAGIGKFLNDVCALVESKKTSDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIELKRGADVENLTNMLYKKTRLEDTFGVNMLAVANGRPETMGLKKIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ + LL K +DR  +  GL  A   +D ++ I+R S + + A+  L          
Sbjct: 362 LATRKYQNLLKKEQDRKEIQEGLIKACDVIDLIIEILRGSQSVKDAKACLTNGVTENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I               +  +E Q  AILE+RL +L GL  + +  E       I   
Sbjct: 422 KSSISK--------KMAAMLRFTERQATAILEMRLYKLIGLELEALMKEHEETLKNIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  +L  +K E    RRT +      + +E+ I  +++V  +   GY
Sbjct: 474 EDILNNYDSMAEVIMADLDKIKKEFARKRRTAVENAEEAVYEENKIEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  ++Y   +             +     +        +  F++ G +++ KV  LP
Sbjct: 534 AKTVDTNIYERNKEAA----------DAENKHVLSCMNTGKLCIFTNTGKMHQVKVLDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  +     +    D        ++FATK G +++ + ++F  
Sbjct: 584 YGKFRDKGLPIDNVSNYDSTQENIVYIC---DAEQMRYARLLFATKQGMIKKVEGNEFQV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE++SV+  T    ++L TK G  +RFP   +     + ++GVRGI
Sbjct: 641 AK-RTIAATKLQPEDELISVQVVTDNQQVVLQTKEGYFLRFPAQEV-SGKKKGAIGVRGI 698

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 699 KLRKNDEL 706



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+   V+S           +    +   +         D        ++           
Sbjct: 551 AENKHVLSCMNTGKLCIFTNTGKMHQVKVLDLPYGKFRDKGLPIDNVSNYDSTQENIVYI 610

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  +++G  K+    +F+++ R          +K+     L++V  V D
Sbjct: 611 CDAEQMRYARLLFATKQGMIKKVEGNEFQVAKR------TIAATKLQPEDELISVQVVTD 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N Q++L + +G  +R P  E+    +   GV      K++ +
Sbjct: 665 NQQVVLQTKEGYFLRFPAQEVSGKKKGAIGVRGIKLRKNDEL 706


>gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
 gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265]
          Length = 758

 Score =  612 bits (1578), Expect = e-173,   Method: Composition-based stats.
 Identities = 282/871 (32%), Positives = 446/871 (51%), Gaps = 121/871 (13%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI    IT+E++ SY+ YA++VI+GRA+PD+RDGLKPV RRI++ M + G  +N  Y K 
Sbjct: 3   GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+V+GKYHPHG+A++YDAL RMAQD+ +R  L++G GNFGS+DGDPPAA RYTE R
Sbjct: 63  ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVR 122

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + + +L+ DL KDTV++ PN+DGS +EP VL A +P +LVNG  GIAVG++T IP HN
Sbjct: 123 LTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHN 182

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           LGE++D  +  + NP+     LM  ++GPDFPTG  I+    +   Y  G+G I +RG +
Sbjct: 183 LGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQDLVKVYEEGKGVIRVRGRA 242

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+  G + ++V+ EIPY VNKA ++ +IA+L+R++++  + ++RDES+RQG RVV+EL
Sbjct: 243 KLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLEL 302

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           K+GAS   ILNQLY  T+L++ F++NMVAL    P + TL   + +FV FR+E ++RRT+
Sbjct: 303 KKGASFHHILNQLYEQTALENSFAINMVALKDGAPVQLTLRDYIASFVDFRKETILRRTR 362

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           YLL+KA  R  V+ G+  A+ N+D V+ IIR +   + A+R LM +              
Sbjct: 363 YLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQI------------- 409

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+EVQ  A+LE++L  L  + ++ +  EL SL   I E  +IL+S 
Sbjct: 410 -------------GLTEVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSE 456

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           ++LL +I +EL  VK      RRT I        +      E   + +   G ++R    
Sbjct: 457 TKLLEVIAEELKHVKKLFADQRRTLIG-FSDQQTETVQAAEETFFIELLEYGIIRR---- 511

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
                            + +  + D   V     V+F ++ G ++    + +P       
Sbjct: 512 ----------------SKTQTNLVDFIEVQGSDPVMFLTNFGKIFCISAYEIPESQR--- 552

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G AL  +  +   E++  +           N  ++  ++ G  +R +L    +I   G  
Sbjct: 553 GVALNALFPMGNDEKVLLL--------GTQNQELIAISEKGKGKRFRLD-VEKIPSRGGY 603

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ 734
              LD  D ++SV       ++++ +  G+ +R  + +I     R   GV+ +   +GD+
Sbjct: 604 YFLLDPGD-MVSVIVPVTSKELVVISAQGKALRLDVESIPERGLRTG-GVKVMRTYEGDR 661

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V+    +            Y K                                      
Sbjct: 662 VVGATCLKQKYIVTMTENAYAKRTDIDEIP------------------------------ 691

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                          KR         NR   G+     ++    G ++ V   N+N   +
Sbjct: 692 ---------------KR---------NRGAAGVFIHKANET--TGPVIGV-SCNEN---M 721

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           L       + + +++I + S+A+ G  +  T
Sbjct: 722 LYRSGREWLPLSMSDIPVCSKASMGKKVLRT 752



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 7/156 (4%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +V   +    + + ++ +      + + +  E       +++    ++E+   L  + Q 
Sbjct: 518 LVDFIEVQGSDPVMFLTNFGKIFCISAYEIPESQRGVALNALFPMGNDEKVLLLGTQNQE 577

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ +SEKG GKR      +I +R G          + + G +V+V     + +++++S +
Sbjct: 578 LIAISEKGKGKRFRLDVEKIPSRGG-------YYFLLDPGDMVSVIVPVTSKELVVISAQ 630

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           G  +R+ V  I      T GV +  T + +RVV   
Sbjct: 631 GKALRLDVESIPERGLRTGGVKVMRTYEGDRVVGAT 666


>gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA2]
 gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL044PA1]
 gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes
           HL037PA3]
 gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08]
          Length = 841

 Score =  612 bits (1577), Expect = e-173,   Method: Composition-based stats.
 Identities = 271/842 (32%), Positives = 404/842 (47%), Gaps = 92/842 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  D++  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MVKKTV--DDDFTENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MGV  ++ +VK AR+ G+VMG+ HPH +AAIYDAL R AQ W++RL L++G GNFGS+
Sbjct: 59  GDMGVRPDRPHVKSARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D   PAA RYTECR+      ++D L +DTVDF PNYDG   EP VL A +PN+LVNG  
Sbjct: 119 DA-GPAAMRYTECRMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL E+V     ++D+PD  LD +M  + GPD PTG  I+G  G+ +A
Sbjct: 178 GIAVGMATNIPPHNLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGGRIIGLDGVADA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGS  IR  + IEK S  R  IVVTE+PY V    ++++I  LV+ K+I  IAD++
Sbjct: 238 YRTGRGSFKIRATARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVK 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VIE+K G + + +L +LY+ T L+  F+ N V L   +P    LI +L+
Sbjct: 298 DLTDLANGTRLVIEVKNGINPEALLERLYKLTKLEDSFATNAVCLVEGQPRTLGLIDMLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV +RRTK+ L+KA+DR H++ GL +A+ ++D+V+ IIR S +  TAR  +M+
Sbjct: 358 VYLDHRLEVTLRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTRVME 417

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L EVQ   IL+++L RLT     ++ +E + 
Sbjct: 418 --------------------------AFDLDEVQANYILDMQLRRLTKFSTIELESERDE 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRE 536
           L   I+    I + ++ L  ++  EL  V  +  TPRRT ++     +           +
Sbjct: 452 LRERIEGLTLIANDKTELRRVVSGELAEVSAKYGTPRRTVLLGAAPSVAAASVPLEVPDD 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              V +S  G + R+  +       G +    V++            +        +S G
Sbjct: 512 PCWVLLSATGLLARIDSAD-NLPATGDRASHDVIISSTR-------TTARGDFGIITSAG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSL-NQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            + +  V  L      A   ++     L +                S     +   T++G
Sbjct: 564 RLVRAHVVDLASLPMTATAPSVAGGTPLADLVGLEKDERALAVTSLSGKGPSLALGTRNG 623

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIR 714
            V+R       +        + L   DE++   E    + ++   T+    + FP SA+R
Sbjct: 624 IVKRVNPELLGK---DSWEIIGLKDGDEVVGALELDDDDLELCFVTQGAALLHFPASAVR 680

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GR+  GV GI     D  I         +           ++ +             
Sbjct: 681 P-QGRSGGGVAGIK--AKDPAIFFGAAPRHGSSVVTVAASSPAVAGK------------- 724

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                         E G  K T    +    R+  G+R     K
Sbjct: 725 ------------------------------EPGSVKVTPFNQYPPKGRATGGMRCQRFLK 754

Query: 835 IN 836
             
Sbjct: 755 GE 756


>gi|254432446|ref|ZP_05046149.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
 gi|197626899|gb|EDY39458.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Cyanobium
           sp. PCC 7001]
          Length = 834

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 294/868 (33%), Positives = 431/868 (49%), Gaps = 111/868 (12%)

Query: 1   MTEHIISS----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M E   +     D   +  I  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRI
Sbjct: 1   MAEERGNERNGGDPGGDGRIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M ++G+  ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GN
Sbjct: 61  LFAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           FGSVD DPPAA RYTE RL   AH  LLD++G DTVDF PN+DGS QEP VL A+ P +L
Sbjct: 121 FGSVDDDPPAAMRYTETRLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLL 180

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVGMATNIP HNLGEVVD  +A+I  PD+  + L  ++ GPDFPTG  +L  +
Sbjct: 181 LNGCTGIAVGMATNIPPHNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSS 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVRE 290
           G+++ Y  GRGSI +RGV+HIE+         R  +V+TE+PYQ++KA  +EK+AE V +
Sbjct: 241 GVRDTYRLGRGSIPMRGVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVND 300

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I  IAD+RDESDR+G RVV+EL+R A+AD +L +L R T+LQS F   ++AL   +P 
Sbjct: 301 GKIGGIADIRDESDREGMRVVVELRRDANADTVLAELQRRTALQSNFGAILLALVNGQPV 360

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           + +L  +L+ F+ +RE  ++RRT++ L +  DR  V+ GL  A+  L EV+ +I      
Sbjct: 361 QLSLRRLLQEFLDYRELTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMIT----- 415

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                                   D +S        + LSE Q  A+L + L RLTGL +
Sbjct: 416 ---------------------AAADAASARASLQVRLDLSERQADAVLAMPLRRLTGLEQ 454

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + +R E   L  E      +L  R  LL  +  E  ++K    TPRRTR+VEG  D+  +
Sbjct: 455 ESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALKKRYGTPRRTRLVEGGDDLVAQ 514

Query: 531 DCIVREDMVVTVSHLGYV-----KRVPLSVYRAQRRGGKGRSGVVMRDEDFV-------- 577
                                   RV +   RA +       G +  +E           
Sbjct: 515 RAAAARPNAELQRQQALEALASDSRVLIQADRAVKIVTPQVLGRLHLEEPAPLGEHPAPA 574

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L  V++   VL F++ G V   + W      P    + L + L    G  +  ++P  
Sbjct: 575 QLLLTVASQPQVLAFTTDGRVAVLR-WEFAGQQPGPLERFLPDSLE---GASVMQVLPLQ 630

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
           E       L +   +  G  +R  L D   ++      +KL     +  V  C    +++
Sbjct: 631 EGSDPH--LSIGLLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELV 688

Query: 698 LTTKLGQCVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           + +  G+ +R   +  +    GR + G   + L   +Q++  A V  + +          
Sbjct: 689 VASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPASGS---------- 738

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                      +L  S +G  K+ +   
Sbjct: 739 -------------------------------------------VLLASRQGQVKKLAVES 755

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAV 844
            R   R   G+     S+     ALVA+
Sbjct: 756 LRRCERGDLGLIGIRFSQR--GDALVAL 781



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           QE       I  +S  G  KR    D + +S R+        + +   +  +V   P   
Sbjct: 630 QEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAA---TVLKLKEGVTLQRVV---PCRS 683

Query: 850 NDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++++ S  G ++R+  NE  + +  R  +G V+     DE++V    +  S
Sbjct: 684 GAELVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRLLPDEQIVGAACVPAS 736


>gi|297243586|ref|ZP_06927517.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
 gi|296888337|gb|EFH27078.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Gardnerella vaginalis AMD]
          Length = 887

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 263/892 (29%), Positives = 429/892 (48%), Gaps = 123/892 (13%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M  M +  
Sbjct: 13  DPRKVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGNMNLSP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +  Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +SLRL L++G GNFGS+D D PAA
Sbjct: 73  DHAYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFSLRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  A+  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMA
Sbjct: 132 SRYTEARLAPASLGMNADINEDTVDFVPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LM+++ GPD+P+G +I+GR+GI+ AYATGRG+
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDATLDDLMKLVPGPDWPSGGIIIGRSGIREAYATGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              R  +HIE  +  ++ I+VTE+P+ V    +LE+I++ V+ +++  I+   D +D   
Sbjct: 252 FTTRSTTHIENITARKKAIIVTELPFMVGPERVLERISQGVKSRKLDGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+++T LQ  F++N VAL   +P    L  +L  +++ R 
Sbjct: 312 GTRIVIEIKTGFDPNAVLAQLFKHTPLQESFTINNVALVDGRPHTMGLRELLDVWISHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            VV RR+++   KA++R H++ GL +A+ ++DEV+++IR S + ++A+ +L++       
Sbjct: 372 TVVRRRSEFRRKKAQERLHLVDGLLLALLDIDEVIQVIRSSEDADSAKTKLIK------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++  E + L  +I+E
Sbjct: 425 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELEAERDDLLKKIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------------ 534
              ILSS ++L  ++  ++ +   + DTPRRT +++   D                    
Sbjct: 466 LNQILSSEAKLDNVVIADMDTAVKQWDTPRRTILLDENEDGSFTPVASSINKNSEDIAIK 525

Query: 535 --------------------------------------REDMVVTVSHLGYVKRVPLSVY 556
                                                  E   V +S  G + R      
Sbjct: 526 AVQSANKITSTQADLAAAANAARKTGEADASSVAMQLSDEPCAVALSTSGLIART----- 580

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA--- 613
            +        S            +F  +T ++    +S G +    V  LP  + +    
Sbjct: 581 -SIAVLEHWNSHNNNVFNTPCKTMFETTTRSTCALVTSSGRLVLAHVADLPQLNYEEGKP 639

Query: 614 -------RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                  + + L+         R   ++     ++S N   +   T++G V+R       
Sbjct: 640 ALLSHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATPLAIGTRNGVVKRWNFEAPT 699

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
            +       + L   D +++       + ++  +     + F    +R   GR + G+ G
Sbjct: 700 TM--DSWSIIDLKDDDTVIAAAPAEDNDRLVFISSDSSLLTFDAKQVRP-QGRTAGGMAG 756

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I LA+G +V + A+V     ++          SA   ++     +  +L           
Sbjct: 757 IRLAEGAKVATFAVVPEKSIEWHYEEGENGLFSASGTVVFTVAGDSEALPG--------- 807

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                            +E G  K T    +    R+  G+R+    K  + 
Sbjct: 808 -----------------TENGSAKITPFDMYPTKGRATGGVRSQRFLKGQDT 842



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 58/172 (33%), Gaps = 11/172 (6%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++ H            K       + + +    T   +    E  +S       +     
Sbjct: 622 VLAHVADLPQLNYEEGKPALLSHGVKAQELLTSTQSTDPVRGERVVSAIAFDASQNATP- 680

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +   +  G  KR +      +      + +  +  + +   ++A  P  DND+++ +S  
Sbjct: 681 LAIGTRNGVVKRWNFEA-PTT------MDSWSIIDLKDDDTVIAAAPAEDNDRLVFISSD 733

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
            +L+     ++R   R   G+     A+  +V +   + E  I    +E E+
Sbjct: 734 SSLLTFDAKQVRPQGRTAGGMAGIRLAEGAKVATFAVVPEKSIEWHYEEGEN 785


>gi|291519485|emb|CBK74706.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 746

 Score =  612 bits (1577), Expect = e-172,   Method: Composition-based stats.
 Identities = 256/737 (34%), Positives = 405/737 (54%), Gaps = 24/737 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ S++ Y+++VIL RA+PD+RDGLKPV RR L+ M ++ V++NK Y K
Sbjct: 3   QEIIRTEYSEIMQKSFIDYSMSVILARAVPDVRDGLKPVQRRTLYDMYELKVDYNKPYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+AL  M+QD+   L L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYEALVVMSQDFKKSLPLVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL K A  + L DL K+ VDF PNYD + +EP VL  R PN+L+NG  GIAVGM T+IP 
Sbjct: 123 RLAKVAQEVYLGDLDKNVVDFIPNYDETEKEPEVLPVRVPNLLINGSDGIAVGMVTSIPQ 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVDG +A + NPDI    +M+II GPDFPTG ++  +  +   Y+TG G I IRG
Sbjct: 183 HNLGEVVDGVIAYMKNPDISTPEMMQIIPGPDFPTGGIVTNKDDLLEIYSTGLGKIKIRG 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGYR 309
            + IEK  G +EQIV+TEIPY +  A + +    I  LV  K+  DI D+ ++S  +  R
Sbjct: 243 KAEIEKLKGGKEQIVITEIPYPMIGANIGKFLNDIYSLVETKKTNDIVDISNQSKGEQMR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++EL++GA A  +LN LY+ T L+  F VNM+A+   KPE   ++ I++  V F+ E+ 
Sbjct: 303 IIVELRKGADAQNVLNLLYKKTRLEDTFGVNMLAVADGKPETLGIVPIIRHHVDFQYELC 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+  +LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K 
Sbjct: 363 TRKYNHLLGKEQEKKEIQEGLIKACDVIDLIIEILRGSKDVKQAKACLVDGITAGIKFKS 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                D           ++ +E Q +AIL++RL RL GL  + +R +      +I +   
Sbjct: 423 QKSKADAEQ--------LHFTERQAQAILDMRLHRLIGLEIEALRGDYAETLDKIAKYTK 474

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL SR+ +  +I ++L ++K E    RRT I      + +E  I   D+ V +    Y +
Sbjct: 475 ILGSRAEMAKVIIKDLQAIKKEYARERRTVIDNVEEAVVEEKPIEVIDVAVLIDRFAYAR 534

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V +  Y   +             E     +        +  F+  G ++  KV  LP G
Sbjct: 535 VVDMPTYERNKEAA----------ETESKKIVFCKNTDKICLFTEKGDMHTIKVLSLPFG 584

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G+ +      ++ +     + F +   +  +  ++F TK   ++    S+F    
Sbjct: 585 KFRDKGQPIDTAEKGSKIDLTKENLIFADAMENIKDKKLIFGTKQAMIKLVDGSEFDVSR 644

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                A KL+ +DE++ V+     + +++ +     +R     I     + + GVRGI L
Sbjct: 645 -KTIAATKLNDKDEVICVKIINPGDTVVMQSAKDMFLRIEGDTIPEKK-KTAAGVRGIKL 702

Query: 730 AKGDQVISMAIVLHADA 746
           AKGD++ ++ ++   D+
Sbjct: 703 AKGDELTNIYVLAEGDS 719



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           K++ ++  +++   K     +F +S       +    +K+N+   ++ V  +N  D +++
Sbjct: 619 KDKKLIFGTKQAMIKLVDGSEFDVSR------KTIAATKLNDKDEVICVKIINPGDTVVM 672

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            S K   +R+  + I    +   GV     AK + + ++  + E + ++
Sbjct: 673 QSAKDMFLRIEGDTIPEKKKTAAGVRGIKLAKGDELTNIYVLAEGDSIE 721


>gi|306818810|ref|ZP_07452532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
 gi|304648496|gb|EFM45799.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris
           ATCC 35239]
          Length = 847

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 287/847 (33%), Positives = 414/847 (48%), Gaps = 81/847 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+S  +L G++++EL      L +PRRT ++E                V
Sbjct: 477 LRAAIAELEAILASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 540 -VTVSHLGYVKRVPLSV---YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FS 593
            VT++    ++         + A     +  + V       +       T T  +F   +
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVT 596

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----PFPEDESSWNNLYVV 649
           S GFV +     LP     A G+ +               +          S   +  V 
Sbjct: 597 SSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVG 656

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G ++R +        ++    + LD  D+++       +   +L +   Q +R P
Sbjct: 657 IITESGVIKRMRPDYPST--QNRFPIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTP 714

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            SA+R   GRN+ GV G+SL    +V++ AI+   +            M A         
Sbjct: 715 ASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSS- 772

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                                   K T    + I  R G+G+RA
Sbjct: 773 ---------------------------------------VKLTPLDRYPIKGRGGQGVRA 793

Query: 830 TDVSKIN 836
               K  
Sbjct: 794 QRFLKGE 800



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   +         + +      +         + E       ++               
Sbjct: 591 VFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLD 650

Query: 796 KEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +++ +  ++E G  KR    D+    NR         +  +++   +V      D+ Q +
Sbjct: 651 EDEIVGIITESGVIKRMRP-DYPSTQNR-------FPIINLDDTDQVVFAGAAGDDAQFV 702

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           LVS    L+R P + +R   R   GV   S   + +V++   + E E+
Sbjct: 703 LVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 17/170 (10%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +G+ V+ +  +   +         +          + +   I +L +   V        
Sbjct: 638 EEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV------F 691

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GAL-----V 842
                   QF+L  ++     RT +   R   R+  G+    +    ++  GA+     V
Sbjct: 692 AGAAGDDAQFVLVSTDAQLL-RTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750

Query: 843 AVFPVNDNDQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           A   V     ++      ++ ++   P++   I  R  +GV      K E
Sbjct: 751 ASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGE 800


>gi|169350468|ref|ZP_02867406.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
 gi|169292788|gb|EDS74921.1| hypothetical protein CLOSPI_01236 [Clostridium spiroforme DSM 1552]
          Length = 849

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 277/882 (31%), Positives = 449/882 (50%), Gaps = 93/882 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I  +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G    K Y 
Sbjct: 2   DKKIV-MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLATKPYR 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ R++QDW +R  LI+ QGN GS+D DP AA RYTE
Sbjct: 61  KSAKTIGNVIGNYHPHGDTSVYDAMVRLSQDWKMRAPLIDMQGNNGSIDNDPAAAMRYTE 120

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP 
Sbjct: 121 ARLSPIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPP 180

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  I + +  L+ +ME I+GPDFPTGA++ G+ GI NA+  G+G +++R 
Sbjct: 181 HNLEEVIDATIYRIKHSNCSLEKIMEFIKGPDFPTGAIVEGKEGILNAFKHGKGKVIVRS 240

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I +   +  +IV++EIPY+VNKA ++ KI E+   + +  I ++RDESDR G R+VI
Sbjct: 241 KTEIIEEK-NMNKIVISEIPYEVNKAELVRKIDEIHFNRNLEGIIEVRDESDRNGLRIVI 299

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+  S    LN LY+ T LQ  ++ NMVA+   +P    ++ IL  ++  + +VV R 
Sbjct: 300 DLKKDISVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGILDILDGYIDHQIDVVTRS 359

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + Y LNKA+DR H++ GL  A++ LD+VV+ IR S +   A++ LM +            
Sbjct: 360 SIYDLNKAKDRKHIVEGLIKAISILDDVVKTIRESKDKSDAKKNLMAK------------ 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT      + NE   L  +IK    IL 
Sbjct: 408 --------------YEFSEKQAEAIVMLQLYRLTNTDIKTLENENEELNEKIKYLNTILD 453

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  +L ++K +   PR + I + +    ++++  I+ ED+ ++++  GY+KR
Sbjct: 454 SDEVLRKVIIDQLKNIKKKYPMPRLSMIRDKIQEVKIDEKAMILSEDVNISITRDGYIKR 513

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +     +A       ++    ++ D++  ++  +T   +L FS  G      V ++    
Sbjct: 514 ISNRSIKAS-----EKTPFGKKENDYLVSMYKANTLDHLLLFSDAGNYLFIPVHKIEEFK 568

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  GK +  ++ ++  E+I   +   +       LYV+ ATK+G ++R  L DF     
Sbjct: 569 WKDPGKHVSYLVKMDSSEKIIASILVKDFNL---PLYVMIATKNGQIKRTLLKDFEVTRY 625

Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S     + L + D+++ V+    +  I+LTTK G    +    +    G  ++G++ I+L
Sbjct: 626 SKPLKCIGLKNGDKVVDVKLTNNDQGIILTTKKGYGALYSEQEV-SIVGIKALGIKAINL 684

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+++S+                                                   
Sbjct: 685 -KDDELVSLDTFDPMV-------------------------------------------- 699

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  +  ++ +S+ G  KR    D +  NR+ KG+      K  +   +     V++
Sbjct: 700 -------DHSLVLISDSGGIKRIKISDIKPCNRATKGVMLFKNLKT-KTTYVKKALIVDN 751

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N QI++  +  T++   VN+    S   K   +    KD+ +
Sbjct: 752 NQQIMITLNNQTVVEFKVNDYHNMSLEQKFSSLVKLNKDQYI 793


>gi|309775456|ref|ZP_07670459.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916845|gb|EFP62582.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 832

 Score =  611 bits (1576), Expect = e-172,   Method: Composition-based stats.
 Identities = 276/799 (34%), Positives = 429/799 (53%), Gaps = 40/799 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    + S  + + M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M + G  W+K 
Sbjct: 9   EHHSSVISSPLEEIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYEDGNTWDKG 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K A+  G V+G YHPHG++++Y+A+ RM+Q+W +R   I+ QGN GS+D DP AA RY
Sbjct: 69  YRKSAKTVGLVIGNYHPHGDSSVYNAMVRMSQEWKIRTPQIDMQGNNGSIDDDPAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL D+ K+TV + PN+D +  EP VL ARYPN+LVNG  GIA G ATNI
Sbjct: 129 TEARLGKISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+D  V  I + D  L+ LME I+GPDFPTG ++ G  GI+ A+ TG+G I++
Sbjct: 189 PPHNLSEVIDAAVYRIQHADCSLEELMEYIQGPDFPTGGIVQGLDGIREAFETGKGRIIV 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG + IE+     +QIV+TEIPY+V K+ M++KI ++   K+I  I D+RDESDR G RV
Sbjct: 249 RGKAVIEQKKT-VQQIVITEIPYEVVKSNMVKKIDDIRLNKKIEGILDVRDESDRNGLRV 307

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+++K+ A+ DVILN LY+ T LQ  ++ N+VA+   +P +  L  +L AF+  R EV+ 
Sbjct: 308 VVDMKKDANGDVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAQMLDAFIEHRREVIE 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR++Y L K  DR H+L GL  AV+ LDE++ +IR S +   ++R +M            
Sbjct: 368 RRSRYDLKKKEDRCHILEGLIKAVSILDEIIALIRASKDKADSKRRIM------------ 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              S+ Q  AI+ +RL RL+      +R E  +L  EI+E  DI
Sbjct: 416 --------------DAFAFSDAQAEAIVTMRLYRLSSTDITQLREEYATLLNEIEELHDI 461

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPR--RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  ++ +EL  VK    TPR  R       + ++    I  E ++ T+S  GY 
Sbjct: 462 LENPRMLKKVMIRELHEVKKAFKTPRLTRIEHEIEEIVIDKVAMINSEQVMFTISRDGYF 521

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KRV +  Y A +          +++ D +     V+T   VLFF++ G      V+ +  
Sbjct: 522 KRVSMRSYNAGKE-----DMTGLKEGDHLVGYGEVNTLDHVLFFTTQGTYGYTPVYEVEE 576

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G  + + + ++  E+IT         +   N Y++  TK+G V++  + ++   
Sbjct: 577 SRWKEIGSHINSTIRISGEEKITDAFVLRSFAT---NAYMISVTKNGLVKKTAVREYEVS 633

Query: 669 NRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +  ++ MKL   DE+++       ++IL+ +K G   R+P+S I   + R S GV+ +
Sbjct: 634 RNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVSRYPVSLIPETSPR-SKGVKAM 692

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L   D+++S  I     +         +    +   I               V+    +
Sbjct: 693 NLV-MDELVSACIHHADASQLVVFTDQCQVKRIKLSDIDVTGRPARGAMICKKVKSKPYQ 751

Query: 788 ERCQELKLKEQFILTVSEK 806
                L      ++ ++E+
Sbjct: 752 IAHIALHELNDELVIINEE 770



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 78/211 (36%), Gaps = 15/211 (7%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS-LAKGDQVIS---MAIVL 742
           V     E  +   ++ G   R            N+ G   ++ L +GD ++    +  + 
Sbjct: 503 VAMINSEQVMFTISRDGYFKRVS------MRSYNA-GKEDMTGLKEGDHLVGYGEVNTLD 555

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           H      +       +         +     +     S E  I++           ++++
Sbjct: 556 HVLFFTTQGTYGYTPVYEVEESRWKEIGSHINSTIRISGEEKITDAFVLRSFATNAYMIS 615

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           V++ G  K+T+  ++ + +R+ K +    + +      ++      D D+I++ S  G +
Sbjct: 616 VTKNGLVKKTAVREYEV-SRNNKTMSNMKLLEG---DEVITTMAAYDYDEILIASKNGYV 671

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            R PV+ I   S  +KGV   +   DE V +
Sbjct: 672 SRYPVSLIPETSPRSKGVKAMNLVMDELVSA 702



 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 99/273 (36%), Gaps = 22/273 (8%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +   +   ++ G  +R  +  +            L   D ++        + +L  T
Sbjct: 505 MINSEQVMFTISRDGYFKRVSMRSYNAGKED---MTGLKEGDHLVGYGEVNTLDHVLFFT 561

Query: 701 KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             G     P+  +    +    S     I ++  +++    ++     +    +  +   
Sbjct: 562 TQGTYGYTPVYEVEESRWKEIGSHINSTIRISGEEKITDAFVLRSFATNA--YMISVTKN 619

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDF 817
              ++    + E   + K  S+++    +E    +   +   IL  S+ G+  R      
Sbjct: 620 GLVKKTAVREYEVSRNNKTMSNMKLLEGDEVITTMAAYDYDEILIASKNGYVSRYPVSLI 679

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRA 876
             ++   KG++A ++     +  LV+    + D  Q+++ +D+  + R+ +++I +  R 
Sbjct: 680 PETSPRSKGVKAMNL----VMDELVSACIHHADASQLVVFTDQCQVKRIKLSDIDVTGRP 735

Query: 877 TKGVVIFSTAKDERVVS----VERIRESEIVDE 905
            +G +I       +V S    +  I   E+ DE
Sbjct: 736 ARGAMICK-----KVKSKPYQIAHIALHELNDE 763


>gi|319937327|ref|ZP_08011734.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
 gi|319807693|gb|EFW04286.1| DNA topoisomerase IV subunit A [Coprobacillus sp. 29_1]
          Length = 885

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 272/853 (31%), Positives = 429/853 (50%), Gaps = 92/853 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I + S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +NK Y 
Sbjct: 2   SEKIITQSLDDIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYAMYKEGNTYNKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ R++Q+W +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 62  KSAKTVGNVIGNYHPHGDTSVYDAMVRLSQEWKMRIPLVDMQGNNGSIDNDPAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL D+ K+TV    N+D +  EP V+ A+YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 ARLSAIAAELLKDIDKETVQMALNFDDTEYEPTVVPAKYPNLLVNGATGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  + +P   LD LME ++GPDFPTGA++ G+ GI+ A+  GRG +V+R 
Sbjct: 182 HNLEEVIDATIYRLSHPHCSLDKLMEFMKGPDFPTGAIVEGKQGIRTAFEKGRGKVVVRS 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I     +  +I+V+EIPY+VNKA ++ K+ E+   K +  I ++RDESDR G  +VI
Sbjct: 242 KTEII-HEKNMNKIIVSEIPYEVNKAELVRKLDEIRFNKSVDGIIEVRDESDRNGLSIVI 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+       LN  ++ T LQ  ++ NMVA+   +P    +  IL  ++  + EV+ +R
Sbjct: 301 DLKKDVDVQNTLNYFFKNTDLQKNYNYNMVAIKDKRPVCMGIEAILDGYIQHQIEVITKR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKA +R H++ GL  AV+ LD+VV  IR S + + A+                  
Sbjct: 361 SIFDLNKAEERKHIVDGLIKAVSILDDVVHTIRHSKDKQDAK------------------ 402

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                   I        +E Q+ AI+ L+L RLT      +  E   L   I+   DIL+
Sbjct: 403 --------INIQTQFGFTEKQSEAIVTLQLYRLTNTDIVSLEKEKEELESLIQTLNDILN 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  EL ++K +  +PR T I +    + + +E  I+ ED+ V+++  GY+KR
Sbjct: 455 SDQVLRKVIVDELKNIKKQYPSPRLTEIKDEVQEIIINEEAMILPEDIYVSITQDGYIKR 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    Y+A        +    +D+D + DL   +T   +L F+  G      + +L    
Sbjct: 515 ISQRSYKASEN-----TLFGKKDDDVLVDLHFANTLDKLLVFTDKGNYMYIPLHKLEEFK 569

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  GK +  ++ ++  E+I   +     +     LY++ A++ G ++R +L +F     
Sbjct: 570 WKELGKHISYLIKVSPEEKIVGSVLVKSFDY---PLYIILASRFGQMKRVELKEFDVTRF 626

Query: 671 -SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                 + L   D +L V     +  I+LTT+ G    +    I V  G  + G++GI+L
Sbjct: 627 TKPMKCINLKKDDSLLQVGLSDGQQGIVLTTQAGYATLYSEQEISVL-GVKAGGIKGINL 685

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D++I+M I      D                                          
Sbjct: 686 -KNDELIAMNIFNPLRTDS----------------------------------------- 703

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                    FIL   + G  KR    D    NR+ KG       K   I +L   F +  
Sbjct: 704 ---------FILISDQPGI-KRLRISDIPSCNRATKGNLIFKSPKTKHIQSL-YAFVLET 752

Query: 850 NDQIILVSDKGTL 862
            DQ+ + +D   +
Sbjct: 753 KDQLNIETDSQKI 765



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 112/293 (38%), Gaps = 17/293 (5%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L + +     +   E+         V  T+ G ++R     +     S          D 
Sbjct: 479 LTEIKDEVQEIIINEEAMILPEDIYVSITQDGYIKRISQRSY---KASENTLFGKKDDDV 535

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFA----GRNSVGVRGISLAKGDQVISMA 739
           ++ +      + +L+ T  G  +  P+  +  F     G++      I ++  ++++   
Sbjct: 536 LVDLHFANTLDKLLVFTDKGNYMYIPLHKLEEFKWKELGKHIS--YLIKVSPEEKIVGSV 593

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +V   D      +        +  L   D    T      +++ + S  +      ++  
Sbjct: 594 LVKSFDYPLYIILASRFGQMKRVELKEFDVTRFTKPMKCINLKKDDSLLQVGLSDGQQGI 653

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQIILVS 857
           +LT ++ G+    S  +  +      GI+  ++    +   L+A+   N    D  IL+S
Sbjct: 654 VLT-TQAGYATLYSEQEISVLGVKAGGIKGINL----KNDELIAMNIFNPLRTDSFILIS 708

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV-ERIRESEIVDEAEST 909
           D+  + R+ +++I   +RATKG +IF + K + + S+   + E++     E+ 
Sbjct: 709 DQPGIKRLRISDIPSCNRATKGNLIFKSPKTKHIQSLYAFVLETKDQLNIETD 761


>gi|210612463|ref|ZP_03289321.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
 gi|210151571|gb|EEA82578.1| hypothetical protein CLONEX_01522 [Clostridium nexile DSM 1787]
          Length = 744

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 255/728 (35%), Positives = 401/728 (55%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y
Sbjct: 2   QDSQIIRTEYSDIMKKSYIDYAMSVIVARALPDVRDGLKPVQRRTLYDMHELGIRYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K    + L DL K  VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLAKLTQEVFLADLDKGVVDFAPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D   A + N +I    LM+ I+GPDFPTG +++ +  + N Y TG G I I
Sbjct: 182 PTHNLGEVIDAVKAYMKNSEITTKQLMKHIKGPDFPTGGIVVNKDDLLNIYETGSGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG   +E+  G ++++V++EIPY +  A + + + +   LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEELKGGKKRLVISEIPYTMIGAGIGKFLNDVASLVESKKTNDITDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  + + N LY+ T L+  F VNM+A+   KPE   L  I++  V F+ +
Sbjct: 302 IRIVLELRKDADVENLKNMLYKKTRLEDTFGVNMLAVANGKPETMGLKSIIEHHVDFQFD 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V  R+ K LL K  D+  +  GL  A   +D ++ I+R S + + A+  L          
Sbjct: 362 VATRKYKTLLAKELDKKEIQEGLIKACNVIDLIIEILRGSKSIKEAKACLTDGITENIKF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I               +  +E Q  AILE+RL +L GL  + ++ E       I   
Sbjct: 422 KSNISK--------KMASMLRFTERQATAILEMRLYKLIGLEIEALQAEYEQTLKSIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I ++L ++K      RRT +      + +E  I  +++V  +   GY
Sbjct: 474 EDILNNYDSMAEVIIEDLDAIKKTYARKRRTIVENAEEAVFEEKKIEEQEVVFLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + V +S Y   R             +     +        +  F++ G +++ KV  +P
Sbjct: 534 ARTVDVSTYERNREAA----------DSENKYIVSCLNTGKICLFTNAGKMHQVKVPDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N   L+        + F  DE S +   ++FATK G +++   S+F  
Sbjct: 584 YGKFRDKGTPIDN---LSNYNSTEEQIVFVCDEGSLSMAKLLFATKQGMLKQVDGSEFQV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE++ V+  T+   I+L T  G  +RF  + +     + +VGVRGI
Sbjct: 641 AK-RTIAATKLLEEDEVICVQVVTEGQSIVLQTMNGYFLRFASTEVPEKK-KGAVGVRGI 698

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 699 KLQKKDEL 706



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 56/170 (32%), Gaps = 6/170 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   ++S           +    +   +         D        ++ +         
Sbjct: 551 SENKYIVSCLNTGKICLFTNAGKMHQVKVPDIPYGKFRDKGTPIDNLSNYNSTEEQIVFV 610

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E  L    +L  +++G  K+    +F+++ R          +K+ E   ++ V  V +
Sbjct: 611 CDEGSLSMAKLLFATKQGMLKQVDGSEFQVAKR------TIAATKLLEEDEVICVQVVTE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
              I+L +  G  +R    E+    +   GV      K + +  V  + E
Sbjct: 665 GQSIVLQTMNGYFLRFASTEVPEKKKGAVGVRGIKLQKKDELEQVYLLEE 714


>gi|313897504|ref|ZP_07831047.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
 gi|312957874|gb|EFR39499.1| DNA topoisomerase IV, A subunit [Clostridium sp. HGF2]
          Length = 831

 Score =  611 bits (1575), Expect = e-172,   Method: Composition-based stats.
 Identities = 277/809 (34%), Positives = 431/809 (53%), Gaps = 41/809 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  + +  E    + S  + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MKKKELPAV-EHHSSVISSPLEDIMGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G  W+K Y K A+  G V+G YHPHG++++YDA+ RM+Q+W +R   I+ QGN GS+
Sbjct: 60  YEDGNTWDKGYRKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQEWKIRTPQIDMQGNNGSI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + +  LL D+ K+TV + PN+D +  EP VL ARYPN+LVNG  
Sbjct: 120 DDDPAAAMRYTEARLGRISEHLLKDIEKETVLWAPNFDDTAMEPTVLPARYPNLLVNGIT 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATNIP HNL E +D  V  I + D  LD LME I+GPDFPTG ++ G  GI+ A
Sbjct: 180 GIAAGYATNIPPHNLSEAIDAAVYRIQHADCSLDELMEYIQGPDFPTGGIVQGIEGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TG+G I+IRG ++IE+     +QIV+TEIPY+V K+ M++KI ++   K+I  I D+R
Sbjct: 240 FETGKGRIIIRGKANIEQKKT-VQQIVITEIPYEVIKSNMVKKIDDIRLNKKIEGILDVR 298

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G RVV+++K+ A+A VILN LY+ T LQ  ++ N+VA+   +P +  L  +L A
Sbjct: 299 DESDRNGLRVVVDMKKDANAQVILNYLYKNTDLQVSYNYNVVAIVDKRPVQMGLAPMLDA 358

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R EV+ RR+++ L K  DR H+L GL  AV+ LDE++ +IR S +   ++R +M  
Sbjct: 359 FIEHRREVIERRSRFDLKKKEDRCHILEGLIKAVSVLDEIIALIRASKDKADSKRRIM-- 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q  AI+ +RL RL+      +R E  +L
Sbjct: 417 ------------------------DAFAFSDAQAEAIVTMRLYRLSSTDITQLREEYAAL 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDM 538
             EI+E  DIL +   L  ++ +EL  VK    TPR T        + ++    I  E +
Sbjct: 453 LNEIEELHDILENPKMLKKVMIRELNEVKKAFKTPRLTSIEHEIEEIVIDKLAMINSEQV 512

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           + T+S  GY KRV +  Y A R          +++ D +     V+T   VLFF++ G  
Sbjct: 513 MFTISRDGYFKRVSMRSYGASRD-----DMTGLKEGDHLVGYGEVNTLDHVLFFTTQGTY 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+ +     +  G  + + + ++  E+IT         +   N Y++  TK+G V+
Sbjct: 568 GYTPVYDVEESRWKEIGSHINSTIRISGEEKITDAFVLRSFAT---NAYMISVTKNGLVK 624

Query: 659 RNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  + ++     +  ++ MKL   D ++        ++IL+ +K G   R+P+S I   +
Sbjct: 625 KTAVREYEVSRNNKTMSNMKLLDGDAVVKTMVAYAYDEILIASKNGFVSRYPVSLIPETS 684

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R S GV+ ++L   D+++S  I     +         +    +   +            
Sbjct: 685 PR-SKGVKAMNLVL-DEIVSACISHGDASQLIVFTDQCQMKRIKLSDVDVTGRPTKGSMI 742

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEK 806
              V+    +     L      ++ ++E+
Sbjct: 743 CKKVKSKPYQIAHIALHDLNDELVIINEE 771



 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 20/289 (6%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           L   E     +   +     +   +   ++ G  +R  +  +            L   D 
Sbjct: 489 LTSIEHEIEEIVIDKLAMINSEQVMFTISRDGYFKRVSMRSYGASRDD---MTGLKEGDH 545

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRV--FAGRNSVGVRGISLAKGDQVISMAIV 741
           ++        + +L  T  G     P+  +    +    S     I ++  +++    ++
Sbjct: 546 LVGYGEVNTLDHVLFFTTQGTYGYTPVYDVEESRWKEIGSHINSTIRISGEEKITDAFVL 605

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                +          +  +  +   +        ++  +    +  +       ++ IL
Sbjct: 606 RSFATNAYMISVTKNGLVKKTAVREYEVSRNNKTMSNMKLLDGDAVVKTMVAYAYDE-IL 664

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKG 860
             S+ GF  R        ++   KG++A ++     +  +V+    + D  Q+I+ +D+ 
Sbjct: 665 IASKNGFVSRYPVSLIPETSPRSKGVKAMNL----VLDEIVSACISHGDASQLIVFTDQC 720

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVS----VERIRESEIVDE 905
            + R+ ++++ +  R TKG +I       +V S    +  I   ++ DE
Sbjct: 721 QMKRIKLSDVDVTGRPTKGSMICK-----KVKSKPYQIAHIALHDLNDE 764


>gi|227875501|ref|ZP_03993641.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
 gi|227843837|gb|EEJ54006.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC
           35243]
          Length = 847

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 286/847 (33%), Positives = 414/847 (48%), Gaps = 81/847 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   +L+S  +L G++++EL      L +PRRT ++E                V
Sbjct: 477 LRAAIAELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 540 -VTVSHLGYVKRVPLSV---YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FS 593
            VT++    ++         + A     +  + V       +       T T  +F   +
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVT 596

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----PFPEDESSWNNLYVV 649
           S GFV +     LP     A G+ +               +          S   +  V 
Sbjct: 597 SSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVG 656

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G ++R +        ++    + LD  D+++       +   +L +   Q +R P
Sbjct: 657 IITESGVIKRMRPDYPST--QNRFPIINLDDTDQVVYAGAAGDDAQFVLVSTDAQLLRTP 714

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            SA+R   GRN+ GV G+SL    +V++ AI+   +            M A         
Sbjct: 715 ASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSS- 772

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                                   K T    + I  R G+G+RA
Sbjct: 773 ---------------------------------------VKLTPLDRYPIKGRGGQGVRA 793

Query: 830 TDVSKIN 836
               K  
Sbjct: 794 QRFLKGE 800



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   +         + +      +         + E       ++               
Sbjct: 591 VFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLD 650

Query: 796 KEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +++ +  ++E G  KR    D+    NR         +  +++   +V      D+ Q +
Sbjct: 651 EDEIVGIITESGVIKRMRP-DYPSTQNR-------FPIINLDDTDQVVYAGAAGDDAQFV 702

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           LVS    L+R P + +R   R   GV   S   + +V++   + E E+
Sbjct: 703 LVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750



 Score = 43.2 bits (100), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 17/170 (10%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +G+ V+ +  +   +         +          + +   I +L +   V    +   
Sbjct: 638 EEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQNRFPIINLDDTDQVVYAGAA-- 695

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GAL-----V 842
                   QF+L  ++     RT +   R   R+  G+    +    ++  GA+     V
Sbjct: 696 ----GDDAQFVLVSTDAQLL-RTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750

Query: 843 AVFPVNDNDQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           A   V     ++      ++ ++   P++   I  R  +GV      K E
Sbjct: 751 ASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGE 800


>gi|307701128|ref|ZP_07638153.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
 gi|307614123|gb|EFN93367.1| DNA gyrase/topoisomerase IV, A subunit [Mobiluncus mulieris
           FB024-16]
          Length = 847

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 286/847 (33%), Positives = 414/847 (48%), Gaps = 81/847 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   +L+S  +L G++++EL      L +PRRT ++E                V
Sbjct: 477 LRAAIAELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 540 -VTVSHLGYVKRVPLSV---YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FS 593
            VT++    ++         + A     +  + V       +       T T  +F   +
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVT 596

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----PFPEDESSWNNLYVV 649
           S GFV +     LP     A G+ +               +          S   +  V 
Sbjct: 597 SSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVG 656

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G ++R +        ++    + LD  D+++       +   +L +   Q +R P
Sbjct: 657 IITESGVIKRMRPDYPST--QNRFPIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTP 714

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            SA+R   GRN+ GV G+SL    +V++ AI+   +            M A         
Sbjct: 715 ASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSS- 772

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                                   K T    + I  R G+G+RA
Sbjct: 773 ---------------------------------------VKLTPLDRYPIKGRGGQGVRA 793

Query: 830 TDVSKIN 836
               K  
Sbjct: 794 QRFLKGE 800



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   +         + +      +         + E       ++               
Sbjct: 591 VFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLD 650

Query: 796 KEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +++ +  ++E G  KR    D+    NR         +  +++   +V      D+ Q +
Sbjct: 651 EDEIVGIITESGVIKRMRP-DYPSTQNR-------FPIINLDDTDQVVFAGAAGDDAQFV 702

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           LVS    L+R P + +R   R   GV   S   + +V++   + E E+
Sbjct: 703 LVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 17/170 (10%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +G+ V+ +  +   +         +          + +   I +L +   V        
Sbjct: 638 EEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV------F 691

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GAL-----V 842
                   QF+L  ++     RT +   R   R+  G+    +    ++  GA+     V
Sbjct: 692 AGAAGDDAQFVLVSTDAQLL-RTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750

Query: 843 AVFPVNDNDQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           A   V     ++      ++ ++   P++   I  R  +GV      K E
Sbjct: 751 ASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGE 800


>gi|269977252|ref|ZP_06184225.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
 gi|269934555|gb|EEZ91116.1| DNA gyrase subunit A [Mobiluncus mulieris 28-1]
          Length = 847

 Score =  611 bits (1574), Expect = e-172,   Method: Composition-based stats.
 Identities = 286/847 (33%), Positives = 414/847 (48%), Gaps = 81/847 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   + +S E     I  + + +EM+NS+L YA++VI  RA+PD +DGLKPV RRILF M
Sbjct: 24  MIIPMSNSSETTVDHIEDIDVIEEMENSFLEYALSVIHSRALPDAKDGLKPVQRRILFQM 83

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK +R+ GEVMGK HPHG+AAIYDAL  +AQ ++LR+ L++G GNFGS 
Sbjct: 84  KQMGLTPDKGHVKSSRVVGEVMGKLHPHGDAAIYDALVHLAQPFNLRVPLVDGHGNFGSP 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL +A+ +L++ L +DTVDF PNYD  FQ+P VL A +PN+LVNG  
Sbjct: 144 D-DGPAAARYTEARLAQASLYLVEGLDEDTVDFVPNYDNQFQQPAVLPAAFPNLLVNGVN 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+ATNIP HN+GE + G + ++D+PD  L+ LM    GPD P G VI+G  GI+ A
Sbjct: 203 GIAVGVATNIPPHNVGETIAGAIHLLDHPDASLEDLMRFCPGPDLPGGGVIVGTAGIREA 262

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  V R  + IE+ +  +  IVVTE+PY V    + EK+ + V   +I  ++  +
Sbjct: 263 YETGRGVFVTRARATIEQVTARKRGIVVTELPYMVGPEKVAEKLKDAVSSGKIKGVSGWQ 322

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+VIE+K G   + +L  LY++T LQ  F +N VAL   + +   L   L+
Sbjct: 323 DLSDRKNGLRLVIEVKTGFHPEAVLASLYKHTPLQESFGINTVALVDGEVKTLGLRAALQ 382

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K R+R H++ GL IAV NLDEV+ +IR S +   AR  L+ 
Sbjct: 383 VFVDHRIEVTRRRSEFRLRKKRERLHLVDGLLIAVLNLDEVIEVIRSSDDSAAARARLIS 442

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT   R ++  E + 
Sbjct: 443 --------------------------VFDLSEPQAEYILELKLRRLTKFSRLELEAEADE 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   +L+S  +L G++++EL      L +PRRT ++E                V
Sbjct: 477 LRAAIAELEAVLASTEKLHGVVRRELQDTATALSSPRRTLLLEEDGTAVAAAEDDLAPAV 536

Query: 540 -VTVSHLGYVKRVPLSV---YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF--FS 593
            VT++    ++         + A     +  + V       +       T T  +F   +
Sbjct: 537 GVTLTSEVPLEVTDEPCRIVWSATGEAARIDASVSFERPAGIPIAGSCETRTRGVFGVVT 596

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM----PFPEDESSWNNLYVV 649
           S GFV +     LP     A G+ +               +          S   +  V 
Sbjct: 597 SSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLDEDEIVG 656

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T+ G ++R +        ++    + LD  D+++       +   +L +   Q +R P
Sbjct: 657 IITESGVIKRMRPDYPST--QNRFPIINLDDTDQVVFAGAAGDDAQFVLVSTDAQLLRTP 714

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            SA+R   GRN+ GV G+SL    +V++ AI+   +            M A         
Sbjct: 715 ASAVRP-QGRNAGGVAGMSLRPNTKVLAGAILPELEVASTVVATVATVMDAMPGANQSS- 772

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                                   K T    + I  R G+G+RA
Sbjct: 773 ---------------------------------------VKLTPLDRYPIKGRGGQGVRA 793

Query: 830 TDVSKIN 836
               K  
Sbjct: 794 QRFLKGE 800



 Score = 73.7 bits (179), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           +   +         + +      +         + E       ++               
Sbjct: 591 VFGVVTSSGFVVRLDTLTLPPAKTVADGEDMTWSFEGAPPLAAAANLEEGETVVGILSLD 650

Query: 796 KEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           +++ +  ++E G  KR    D+    NR         +  +++   +V      D+ Q +
Sbjct: 651 EDEIVGIITESGVIKRMRP-DYPSTQNR-------FPIINLDDTDQVVFAGAAGDDAQFV 702

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           LVS    L+R P + +R   R   GV   S   + +V++   + E E+
Sbjct: 703 LVSTDAQLLRTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 55/170 (32%), Gaps = 17/170 (10%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            +G+ V+ +  +   +         +          + +   I +L +   V        
Sbjct: 638 EEGETVVGILSLDEDEIVGIITESGVIKRMRPDYPSTQNRFPIINLDDTDQVV------F 691

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI--GAL-----V 842
                   QF+L  ++     RT +   R   R+  G+    +    ++  GA+     V
Sbjct: 692 AGAAGDDAQFVLVSTDAQLL-RTPASAVRPQGRNAGGVAGMSLRPNTKVLAGAILPELEV 750

Query: 843 AVFPVNDNDQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           A   V     ++      ++ ++   P++   I  R  +GV      K E
Sbjct: 751 ASTVVATVATVMDAMPGANQSSVKLTPLDRYPIKGRGGQGVRAQRFLKGE 800


>gi|197303042|ref|ZP_03168090.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
 gi|197297897|gb|EDY32449.1| hypothetical protein RUMLAC_01769 [Ruminococcus lactaris ATCC
           29176]
          Length = 748

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 260/729 (35%), Positives = 405/729 (55%), Gaps = 27/729 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 4   NSESQIIRTEYSELMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IYDALA MAQD+    +L++G GNFGS++GD  AA RY
Sbjct: 64  YRKCARIVGDTMGKYHPHGDSSIYDALAVMAQDFKKGQILVDGHGNFGSIEGDGAAAMRY 123

Query: 131 TECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL K    + L DL K+ +DF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT+
Sbjct: 124 TEARLTKFTQEVCLSDLDKNVIDFGPNFDETEKEPVVLPMRVPNLLVNGAEGIAVGMATS 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+DG  A + N  +    LM+ I+GPDFPTG +++ +  + N Y TG+G I 
Sbjct: 184 IPTHNLCEVIDGVKAYMKNDGVTTRQLMKYIKGPDFPTGGIVVNKDDLLNIYETGQGKIK 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQ 306
           +RG   +E   G ++Q+V+TEIPY +  A + + +     LV  K+  DI D+ ++S ++
Sbjct: 244 LRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKE 303

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELKRGA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ 
Sbjct: 304 GIRIVIELKRGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKQIIEHHVDFQF 363

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+   LL + R+++ V  GL  A   +D ++ I+R S + + AR  L++       
Sbjct: 364 ELATRKYTTLLEREREKSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVEGKTE--- 420

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                ++    S +      +  +E Q  AILE+RL RL GL  + ++ E       I  
Sbjct: 421 -----NIRFKFSISKKMAAMLRFTERQATAILEMRLYRLIGLEIEALQKEHEQTLNNIAR 475

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++   +  +I +EL S K E    RRT +      + +E  +  +++V  +   G
Sbjct: 476 YEDILNNYDSMAEVIMEELDSYKKEFGRKRRTVVENAEEAVFEEKKVEEQEVVFLMDRFG 535

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V ++VY   +             +     +        +  F+  G +++ KV  L
Sbjct: 536 YAKTVDMAVYERNKEAA----------DSENKYIVHCMNTGKLCIFTDTGKMHQVKVLDL 585

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N+ +    E    ++    D        ++FAT  G ++R    +F 
Sbjct: 586 PYGKFREKGTPIDNVSNYTSSEEEIVMIC---DAEQMRFAKLLFATAQGMIKRVDGKEFQ 642

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                  +A KL   D ++SV+   +  +++L T+ G  +RFP + +     + +VGVRG
Sbjct: 643 VAK-RTIVATKLQEDDRLVSVKVVNETQNLVLQTRNGYFLRFPAADVPEKK-KAAVGVRG 700

Query: 727 ISLAKGDQV 735
           I L K D++
Sbjct: 701 IRLQKKDEL 709



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   ++            D    +   +         +        ++ +         
Sbjct: 554 SENKYIVHCMNTGKLCIFTDTGKMHQVKVLDLPYGKFREKGTPIDNVSNYTSSEEEIVMI 613

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  + +G  KR    +F+++ R          +K+ E   LV+V  VN+
Sbjct: 614 CDAEQMRFAKLLFATAQGMIKRVDGKEFQVAKR------TIVATKLQEDDRLVSVKVVNE 667

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              ++L +  G  +R P  ++    +A  GV      K + +
Sbjct: 668 TQNLVLQTRNGYFLRFPAADVPEKKKAAVGVRGIRLQKKDEL 709


>gi|171742649|ref|ZP_02918456.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283456272|ref|YP_003360836.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1]
 gi|171278263|gb|EDT45924.1| hypothetical protein BIFDEN_01763 [Bifidobacterium dentium ATCC
           27678]
 gi|283102906|gb|ADB10012.1| gyrA2 DNA gyrase subunit A [Bifidobacterium dentium Bd1]
          Length = 897

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 270/907 (29%), Positives = 423/907 (46%), Gaps = 129/907 (14%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ +AA  +  D+ +DTVDF PNYD   QEP VL +  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARMAQAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR+GI+ AY +GRG+
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIVGRSGIREAYESGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +D   
Sbjct: 252 LTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +LK +V  R 
Sbjct: 312 GTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPHTMGLKEMLKVWVDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+  L+        
Sbjct: 372 VVIRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIA------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++  E + L   I+E
Sbjct: 425 -------------------VFDLDDIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------------------- 524
              IL+S   L G++  E+        TPRRT +++                        
Sbjct: 466 LERILASDEALDGVVIDEMDEAVAAYGTPRRTVLLDEDADGGLVPVTAHGDDGVSATALA 525

Query: 525 ---------------------------LDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVY 556
                                       +       + ++    + S  G + R      
Sbjct: 526 AARTAATVSSAAADVAAAAKAAKKAGEDNATATALQIDDEPCAVMLSATGLIARTH--ED 583

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             +R   +  S    +D+  V  +F  +T +S    +S G +    V  LP  +P     
Sbjct: 584 AVERWENRSGSDARTKDDQIV-SIFRTTTRSSYGLITSAGRLVLAHVVELPAVAPDGPLN 642

Query: 617 ALINILSLNQGERITTIMPFP-----------------EDESSWNNLYVVFATKHGNVRR 659
               + +           P                   +D        +   T++G V+R
Sbjct: 643 VSGGVKAEELLGMTENTDPIRGERVIAAIAMPSVDDAGKDGDGAEPAPLALGTRNGVVKR 702

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   +       + L   DE+L+       + ++  +     + F    +R   GR
Sbjct: 703 WNRESPTTM--DSWSVIDLKDGDEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRP-QGR 759

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI LA G  V + A+V                           TE++    ++ 
Sbjct: 760 TAGGMAGIRLATGCSVAAFAVVP--------------------------TEKVAWTYDEG 793

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                 +          +   L  +E G  K T    +    R   G+R+    K     
Sbjct: 794 ENGLFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNT- 852

Query: 840 ALVAVFP 846
            L+  F 
Sbjct: 853 -LIFAFV 858



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 70/281 (24%), Gaps = 59/281 (20%)

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +    V  +  G + R       +         +    D+I+S+   T  +   L T
Sbjct: 561 QIDDEPCAVMLSATGLIARTHEDAVERWENRSGSDARTK-DDQIVSIFRTTTRSSYGLIT 619

Query: 701 KLGQCVRFPISAIRVF----AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
             G+ V   +  +           S GV+       ++++ M                  
Sbjct: 620 SAGRLVLAHVVELPAVAPDGPLNVSGGVKA------EELLGMTENTDPIRGERVIAAIAM 673

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR----- 811
                        E                                 +  G  KR     
Sbjct: 674 PSVDDAGKDGDGAEPAPLALG--------------------------TRNGVVKRWNRES 707

Query: 812 -TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
            T+   +         +         +   ++A     D D+++ VS   +L+      +
Sbjct: 708 PTTMDSWS--------VIDLK-----DGDEVLAAAEARDGDRLVFVSTDSSLLTFEAKNV 754

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
           R   R   G+     A    V +   +   ++    DE E+
Sbjct: 755 RPQGRTAGGMAGIRLATGCSVAAFAVVPTEKVAWTYDEGEN 795


>gi|325265377|ref|ZP_08132101.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
 gi|324029378|gb|EGB90669.1| DNA topoisomerase IV subunit A [Clostridium sp. D5]
          Length = 748

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 258/729 (35%), Positives = 398/729 (54%), Gaps = 27/729 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 3   SSESQIIRTEYSEVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IY++L  MAQD+    +L++G GNFGS++GD  AA RY
Sbjct: 63  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGKILVDGHGNFGSIEGDGAAAMRY 122

Query: 131 TECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL K      L DL K+ VDF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+
Sbjct: 123 TEARLTKFTQEAYLGDLDKNIVDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNL EV+D   A + N  I    LM  I+GPDFPTG +++ +  + N Y TG+G I 
Sbjct: 183 IPTHNLSEVLDAVKAYMKNDQISTKQLMRYIKGPDFPTGGIVVNKDDLLNIYETGQGKIK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQ 306
           IRG   +E+  G ++Q+V+TEIPY +  + + + + +   LV  K+  DI D+ ++S ++
Sbjct: 243 IRGKVEVEEQKGGKKQLVITEIPYTMIGSGIGKFLNDVCGLVESKKTNDIVDISNQSSKE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ 
Sbjct: 303 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANDRPETLGLKAIIEHHVDFQF 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E++ R+   +L K ++R+ V  GL  A   +D ++ I+R S + + AR  L+        
Sbjct: 363 ELMTRKYTTMLAKEQERSEVQEGLIKACDVIDLIIEILRGSKSVKDARACLVSGVTENIK 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  I               +  +E Q  AILE+RL +L GL  + ++ E       I  
Sbjct: 423 FKSSISK--------KMAALLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNISR 474

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++   +  +I +EL S K E    RRT I      + +E  I  +++V  +   G
Sbjct: 475 YEDILNNYDSMANLIMEELDSYKREYGRKRRTAIENAEEAVFEEKKIEEQEVVFLMDRFG 534

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K + ++ Y   +             +     +        +  F+  G +++ KV  L
Sbjct: 535 YAKTIDVTAYERNKEAA----------DSENKYVVHCMNTGKICIFTDTGRMHQAKVLDL 584

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N   L         +    D        ++FATK G +++ + ++F 
Sbjct: 585 PYGKFRDKGTPIDN---LTNYSSSEEQIVMVCDAEQMRFAKLLFATKQGMIKKVEGTEFQ 641

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   A KL   D ++SV   T+  +I+L TK G  +RFP   I     + +VGVRG
Sbjct: 642 VAK-RTIAATKLQEEDILISVSVVTENQNIVLQTKGGYFLRFPAEEIPEKK-KGAVGVRG 699

Query: 727 ISLAKGDQV 735
           I L K D++
Sbjct: 700 IKLQKKDEL 708



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 58/170 (34%), Gaps = 6/170 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   V+            D    +   +         D         + S         
Sbjct: 553 SENKYVVHCMNTGKICIFTDTGRMHQAKVLDLPYGKFRDKGTPIDNLTNYSSSEEQIVMV 612

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   +++   +L  +++G  K+    +F+++ R          +K+ E   L++V  V +
Sbjct: 613 CDAEQMRFAKLLFATKQGMIKKVEGTEFQVAKR------TIAATKLQEEDILISVSVVTE 666

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           N  I+L +  G  +R P  EI    +   GV      K + + +V    E
Sbjct: 667 NQNIVLQTKGGYFLRFPAEEIPEKKKGAVGVRGIKLQKKDELENVYLFEE 716



 Score = 44.8 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 68/210 (32%), Gaps = 15/210 (7%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  +   ++ + +   +           E   V  C    
Sbjct: 514 AVFEEKKIEEQEVVFLMDRFGYAKTIDVTAYERNKEAA--------DSENKYVVHCMNTG 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDER 751
            I + T  G+  +  +  +     R+  G    +L   +  ++ I M  V  A+     +
Sbjct: 566 KICIFTDTGRMHQAKVLDLPYGKFRD-KGTPIDNLTNYSSSEEQIVM--VCDAEQMRFAK 622

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           + +       +++   + +        + ++          +   +  +L  ++ G+  R
Sbjct: 623 LLFATKQGMIKKVEGTEFQVAKRTIAATKLQEEDILISVSVVTENQNIVLQ-TKGGYFLR 681

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGAL 841
             + +     +   G+R   + K +E+  +
Sbjct: 682 FPAEEIPEKKKGAVGVRGIKLQKKDELENV 711


>gi|306822526|ref|ZP_07455904.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|309801406|ref|ZP_07695533.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304554071|gb|EFM41980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium
           dentium ATCC 27679]
 gi|308221921|gb|EFO78206.1| DNA gyrase/topoisomerase IV, A subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 897

 Score =  610 bits (1573), Expect = e-172,   Method: Composition-based stats.
 Identities = 270/907 (29%), Positives = 423/907 (46%), Gaps = 129/907 (14%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 13  DPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLSP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  DRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ +AA  +  D+ +DTVDF PNYD   QEP VL +  PN+LVNGG GIAVGMA
Sbjct: 132 SRYTEARMARAALGMNADIAEDTVDFTPNYDNKLQEPTVLPSAIPNLLVNGGSGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P+G VI+GR+GI+ AY +GRG+
Sbjct: 192 TNMATHNLGEVVAAAKHLMRHPDATLEDLMRYVPGPDWPSGGVIVGRSGIREAYESGRGA 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R V+HIE  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D +D   
Sbjct: 252 LTTRSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +LK +V  R 
Sbjct: 312 GTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTINNVALVNGRPHTMGLKEMLKVWVDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA +R H++ GL +A+ ++DEV+++IR S + E A+  L+        
Sbjct: 372 VVIRRRSEFRRRKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTRLIA------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++  E + L   I+E
Sbjct: 425 -------------------VFDLDDIQAQYILDLRLRRLTKMSRIELEAERDDLKQRIEE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---------------------- 524
              IL+S   L G++  E+        TPRRT +++                        
Sbjct: 466 LERILASDEALDGVVIDEMDEAVAAYGTPRRTVLLDEDADGGLVPVTAHGDDGVSATALA 525

Query: 525 ---------------------------LDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVY 556
                                       +       + ++    + S  G + R      
Sbjct: 526 AARTAATVSSAAADVAAAAKAAKKAGEDNATATALQIDDEPCAVMLSATGLIARTH--ED 583

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             +R   +  S V  +D+  V  +F  +T +S    +S G +    V  LP  +P     
Sbjct: 584 AVERWENRSGSDVRTKDDQIV-SIFRTTTRSSYGLITSAGRLVLAHVVELPSVAPDGPLN 642

Query: 617 ALINILSLNQGERITTIMPFP-----------------EDESSWNNLYVVFATKHGNVRR 659
               + +           P                   +D        +   T++G V+R
Sbjct: 643 VSGGVKAEELLGMTENTDPIRGERVIAAIAMPSTDDAGKDGDGAEPAPLALGTRNGVVKR 702

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   +       + L   DE+L+       + ++  +     + F    +R   GR
Sbjct: 703 WNRESPTTM--DSWSVIDLKDGDEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRP-QGR 759

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI LA G  V + A+V                            E++    ++ 
Sbjct: 760 TAGGMAGIRLATGCSVAAFAVVP--------------------------AEKVAWTYDEG 793

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                 +          +   L  +E G  K T    +    R   G+R+    K     
Sbjct: 794 ENGLFSASGAVVLTVAGDSEALPGTENGAAKVTPLEMYPTKGRGTGGVRSQRFLKGQNT- 852

Query: 840 ALVAVFP 846
            L+  F 
Sbjct: 853 -LIFAFV 858



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 75/267 (28%), Gaps = 59/267 (22%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A  L   DE  +V            +  G   R    A+  +  R+   VR     K D
Sbjct: 556 TATALQIDDEPCAVML----------SATGLIARTHEDAVERWENRSGSDVR----TKDD 601

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           Q++S+       +           ++    L S   +   ++      E  +      + 
Sbjct: 602 QIVSIFRTTTRSSYGLITSAGRLVLAHVVELPSVAPDGPLNVSGGVKAEELLGMTENTDP 661

Query: 794 KLKEQFILTV-----------------------SEKGFGKR------TSSYDFRISNRSG 824
              E+ I  +                       +  G  KR      T+   +       
Sbjct: 662 IRGERVIAAIAMPSTDDAGKDGDGAEPAPLALGTRNGVVKRWNRESPTTMDSWS------ 715

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +         +   ++A     D D+++ VS   +L+      +R   R   G+    
Sbjct: 716 --VIDLK-----DGDEVLAAAEARDGDRLVFVSTDSSLLTFEAKNVRPQGRTAGGMAGIR 768

Query: 885 TAKDERVVSVERIRESEIV---DEAES 908
            A    V +   +   ++    DE E+
Sbjct: 769 LATGCSVAAFAVVPAEKVAWTYDEGEN 795


>gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
 gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Microbacterium testaceum StLB037]
          Length = 817

 Score =  610 bits (1572), Expect = e-172,   Method: Composition-based stats.
 Identities = 283/858 (32%), Positives = 416/858 (48%), Gaps = 89/858 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +   SS     + I  V ++ EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MPDSRSSS--PVSERIEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VK AR+ GEVMGK HPHG+A IYDAL R+AQ +SLR+ L++G GNFGS+
Sbjct: 59  AEMGLRPDRGHVKSARVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSL 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  L ++L +D VDF PNYDG FQ+P VL A +PN+LVNG  
Sbjct: 119 D-DGPAAPRYTEARLAAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGAT 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+  HNL EVV     ++ NPD  ++ LME + GPD P+G +I+G  GIK+A
Sbjct: 178 GIAVGMATNMAPHNLIEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIVGLDGIKDA 237

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRGS   R  S IE     R  IV+TE+PY V    ++EKI + V+ K++  IAD+ 
Sbjct: 238 YTNGRGSFRTRAKSSIESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVT 297

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +D   G R+VI +K G     +L QLYR T L+  F +N VAL   +P+   L  +L+
Sbjct: 298 DLTDRNNGLRLVIGIKTGFDPKAVLEQLYRLTPLEDSFGINNVALVDGQPQTLGLRDMLR 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R  VV RR++Y L + R+R H++ GL IA+ ++DEV+++IR S + E AR +L +
Sbjct: 358 VYIDHRIRVVTRRSEYRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKLQE 417

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LS  Q   ILELRL RLT   R ++  E + 
Sbjct: 418 --------------------------VFDLSHPQAEYILELRLRRLTKFSRIELEAERDQ 451

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--------GLLDMEDED 531
           L  EI + +++L S + L   + +EL +  +   TPRRT ++                + 
Sbjct: 452 LNAEIAQLVELLGSETLLRQQVAKELDAAAEAYGTPRRTLLLNGGPVQPRSAKAAAAADL 511

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I      V +S  G + R  L    A    G           D +      +T   +  
Sbjct: 512 QIADAPCRVYLSATGRMVRAELI---ADAPAGGVVPPTRRSKHDAIRSAVDTTTRGEIGA 568

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +S G + +     LP     +   A      + Q   +             +   +   
Sbjct: 569 VTSAGRLVRFSPVDLPSVPANSVQLAAGT--KVEQYLALAKGETVVALVPLSDGPTIALG 626

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T+ G V+R   S+         IA  L   D ++         +++      Q +RF  S
Sbjct: 627 TEQGVVKRVAASELGTKPEIEIIA--LRDGDRVVGAAPAGDNAELVFVASDAQLLRFDAS 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           ++R   GR++ G+ GI L+ G +VI+ A++  +  D           +            
Sbjct: 685 SVRP-QGRSASGMAGIRLSDGARVIAFAVIGASAFDAVVVTVAGSTAALPG--------- 734

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                           ++ G  K ++  ++    R+  G+RA  
Sbjct: 735 --------------------------------TDAGSAKVSAFTEYPAKGRATGGVRAQR 762

Query: 832 VSKINEIGALVAVFPVND 849
           + +     ALV  +   D
Sbjct: 763 LLRGE--DALVLAWVGTD 778



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
                I   +E+G  KR ++ +        K     ++  + +   +V   P  DN +++
Sbjct: 618 SDGPTIALGTEQGVVKRVAASEL-----GTK--PEIEIIALRDGDRVVGAAPAGDNAELV 670

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            V+    L+R   + +R   R+  G+     +   RV++   I
Sbjct: 671 FVASDAQLLRFDASSVRPQGRSASGMAGIRLSDGARVIAFAVI 713



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 76/224 (33%), Gaps = 34/224 (15%)

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRN---SVGVRG---ISLAKGDQVISMAIVLHADADY 748
           +I   T  G+ VRF    +      +   + G +    ++LAKG+ V+++  +       
Sbjct: 565 EIGAVTSAGRLVRFSPVDLPSVPANSVQLAAGTKVEQYLALAKGETVVALVPLSDGPTIA 624

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK--LKEQFILTVSEK 806
                 +    A   L +    EI +L++   V G        EL     +  +L     
Sbjct: 625 LGTEQGVVKRVAASELGTKPEIEIIALRDGDRVVGAAPAGDNAELVFVASDAQLL----- 679

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILV-------- 856
               R  +   R   RS  G+    +S       ++A   +  +  D +++         
Sbjct: 680 ----RFDASSVRPQGRSASGMAGIRLSDG---ARVIAFAVIGASAFDAVVVTVAGSTAAL 732

Query: 857 --SDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERI 897
             +D G+       E     RAT GV        ++ +V +  +
Sbjct: 733 PGTDAGSAKVSAFTEYPAKGRATGGVRAQRLLRGEDALV-LAWV 775


>gi|257414210|ref|ZP_04745589.2| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
 gi|257200859|gb|EEU99143.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82]
          Length = 749

 Score =  609 bits (1571), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/764 (34%), Positives = 415/764 (54%), Gaps = 27/764 (3%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D  +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+
Sbjct: 1   MEYDMNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            ++K Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  
Sbjct: 61  RYDKPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGA 120

Query: 126 AAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RYTE RLQK      L DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAV
Sbjct: 121 AAMRYTEARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM T+IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG
Sbjct: 181 GMTTSIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRD 301
            G I IRG   +EK  G ++++V+TEIPY +  A + +    I  LV  K+  DI D+ +
Sbjct: 241 MGKIKIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITN 300

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +S ++G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  
Sbjct: 301 QSSKEGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHH 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V F+ E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L    
Sbjct: 361 VNFQYELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGI 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            +        ++   S  +      +  +E QT AILE+RL +L GL  + +  + +   
Sbjct: 421 TD--------NINFKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETL 472

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I +  DIL SR+ +  +I +EL S K E   PR+T I      + +E  I   D+V  
Sbjct: 473 KNISKYEDILGSRAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFL 532

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +   GY K V ++ Y   +                   +        +  F++ G ++  
Sbjct: 533 MDRFGYAKTVDVATYERNKEAA----------NTENRYILTCKNTDKICIFTNKGQMHLL 582

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV  LP G  + +G  + N   L+          +  + ++ +   V+F TK   ++   
Sbjct: 583 KVLDLPYGKFRDKGTPIDN---LSNYNSSEENFVYITNLAAISRSQVLFGTKSAMLKVVD 639

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            S+F         A KL+  DE++ V+    E  +++ ++    +R  IS+I     + +
Sbjct: 640 GSEFDVAK-RTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKK-KGA 697

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VGVRG+ L  GD + ++ ++   D    E       ++  R   
Sbjct: 698 VGVRGMKLGAGDALAAIYLLNAEDVVNIEVKGKEVALNRLRTAG 741



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + +++ S+K
Sbjct: 626 VLFGTKSAMLKVVDGSEFDVAKR------TTAATKLNEGDELIFVQALALEETLVMQSEK 679

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +R+ ++ I    +   GV        + + ++  +   ++V
Sbjct: 680 DFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVV 723



 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 83/247 (33%), Gaps = 15/247 (6%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  +   ++ + +   +           E   + TC   +
Sbjct: 517 AVVEEKKIEEMDVVFLMDRFGYAKTVDVATYERNKEAANT--------ENRYILTCKNTD 568

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  GQ     +  +     R+  G    +L+  +      + +   A        
Sbjct: 569 KICIFTNKGQMHLLKVLDLPYGKFRD-KGTPIDNLSNYNSSEENFVYITNLAAISRSQVL 627

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               SA  +++ G   ++      ++      E    +    E+ ++  SEK F  R   
Sbjct: 628 FGTKSAMLKVVDGSEFDVAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDI 687

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
                  +   G+R   +       AL A++ +N  D ++ +  KG    V +N +R A 
Sbjct: 688 SSIPEKKKGAVGVRGMKLGAG---DALAAIYLLNAED-VVNIEVKGK--EVALNRLRTAG 741

Query: 875 RATKGVV 881
           R TKG  
Sbjct: 742 RDTKGTK 748


>gi|291535204|emb|CBL08316.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis M50/1]
          Length = 745

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 263/759 (34%), Positives = 414/759 (54%), Gaps = 27/759 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 2   NQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  AA RY
Sbjct: 62  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGAAAMRY 121

Query: 131 TECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQK      L DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAVGM T+
Sbjct: 122 TEARLQKITQEAYLADLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAVGMTTS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG G I 
Sbjct: 182 IPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTGMGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQ 306
           IRG   +EK  G ++++V+TEIPY +  A + +    I  LV  K+  DI D+ ++S ++
Sbjct: 242 IRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVEAKKTSDIVDITNQSSKE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  V F+ 
Sbjct: 302 GIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHHVNFQY 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L     +   
Sbjct: 362 ELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGITD--- 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                ++   S  +      +  +E QT AILE+RL +L GL  + +  + +     I +
Sbjct: 419 -----NINFKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETLKNIAK 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL SR+ +  +I +EL S K E   PR+T I      + +E  I   D+V  +   G
Sbjct: 474 YEDILGSRAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFLMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V ++ Y   +                   +        +  F++ G ++  KV  L
Sbjct: 534 YAKTVDVATYERNKEAA----------NTENRYILTCKNTDKICIFTNKGQMHLLKVLDL 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N   L+          +  + ++ ++  V+F TK   ++    S+F 
Sbjct: 584 PYGKFRDKGTPIDN---LSNYNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVDGSEFD 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   A KL+  DE++ V+    E  +++ ++    +R  IS+I     + +VGVRG
Sbjct: 641 VAK-RTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKK-KGAVGVRG 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + L  GD + ++ ++   D    E       ++  R   
Sbjct: 699 MKLGAGDALAAIYLLNAEDVVNIEVKGKEVALNRLRTAG 737



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + +++ S+K
Sbjct: 622 VLFGTKSAMLKVVDGSEFDVAKR------TTAATKLNEGDELIFVQALALEETLVMQSEK 675

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +R+ ++ I    +   GV        + + ++  +   ++V
Sbjct: 676 DFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVV 719



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 15/245 (6%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  +   ++ + +   +           E   + TC   +
Sbjct: 513 AVVEEKKIEEMDVVFLMDRFGYAKTVDVATYERNKEAANT--------ENRYILTCKNTD 564

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  GQ     +  +     R+  G    +L+  +      + +   A        
Sbjct: 565 KICIFTNKGQMHLLKVLDLPYGKFRD-KGTPIDNLSNYNSSEENFVYITNLAAISHSQVL 623

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               SA  +++ G   ++      ++      E    +    E+ ++  SEK F  R   
Sbjct: 624 FGTKSAMLKVVDGSEFDVAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDI 683

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
                  +   G+R   +       AL A++ +N  D ++ +  KG    V +N +R A 
Sbjct: 684 SSIPEKKKGAVGVRGMKLGAG---DALAAIYLLNAED-VVNIEVKGK--EVALNRLRTAG 737

Query: 875 RATKG 879
           R TKG
Sbjct: 738 RDTKG 742


>gi|291539735|emb|CBL12846.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Roseburia intestinalis XB6B4]
          Length = 749

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 264/764 (34%), Positives = 417/764 (54%), Gaps = 27/764 (3%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  D  +E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+
Sbjct: 1   MEYDMNQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            ++K Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+   L L++G GNFGS++GD  
Sbjct: 61  RYDKPYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGLPLVDGHGNFGSIEGDGA 120

Query: 126 AAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           AA RYTE RLQK      L+DL KD V+F PN+D + +EP VL  + PN+L+NG  GIAV
Sbjct: 121 AAMRYTEARLQKITQEAYLEDLDKDVVNFVPNFDETEKEPEVLPVKVPNLLLNGAEGIAV 180

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GM T+IP HN GEV+DG +A + +PDI+ + +M+ I GPDFPTG ++  +  +   Y+TG
Sbjct: 181 GMTTSIPPHNFGEVIDGVIAYMKDPDINTEQMMQYIPGPDFPTGGIVANKDELLAVYSTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRD 301
            G I IRG   +EK  G ++++V+TEIPY +  A + +    I  LV  K+  DI D+ +
Sbjct: 241 MGKIKIRGKVEVEKGKGGKDRLVITEIPYTMIGANIGKFLNDIYSLVETKKTSDIVDITN 300

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +S ++G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   KPE   ++ I++  
Sbjct: 301 QSSKEGIRIVLELKKGADVENLKNLLYKKTKLEDTFGVNMLAVADGKPETMGIVPIIRHH 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V F+ E+  R+ + LL K RD+  +  GL  A   +D ++ I+R S N + AR  L    
Sbjct: 361 VNFQYELATRKYQTLLAKERDKKEIQEGLIKATDVIDLIIEILRGSKNVKDARACLTDGI 420

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            +        ++   S  +      +  +E QT AILE+RL +L GL  + +  + +   
Sbjct: 421 TD--------NINFKSEQSKRDAAKLRFTERQTTAILEMRLQKLIGLELEALLKDHDETL 472

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
             I +  DIL SR+ +  +I +EL S K E   PR+T I      + +E  I   D+V  
Sbjct: 473 KNIAKYEDILGSRAAMAKVIIKELESFKKEYAKPRKTVIDNLEEAVVEEKKIEEMDVVFL 532

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +   GY K V ++ Y   +                   +        +  F++ G ++  
Sbjct: 533 MDRFGYAKTVDVATYERNKEAA----------NTENRYILTCKNTDKICIFTNKGQMHLL 582

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV  LP G  + +G  + N   L+          +  + ++ ++  V+F TK   ++   
Sbjct: 583 KVLDLPYGKFRDKGTPIDN---LSNYNSSEENFVYITNLAAISHSQVLFGTKSAMLKVVD 639

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            S+F         A KL+  DE++ V+    E  +++ ++    +R  IS+I     + +
Sbjct: 640 GSEFDVAK-RTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDISSIPEKK-KGA 697

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           VGVRG+ L  GD + ++ ++   D    E       ++  R   
Sbjct: 698 VGVRGMKLGAGDALAAIYLLNAEDVVNIEVKGKEVALNRLRTAG 741



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + +++ S+K
Sbjct: 626 VLFGTKSAMLKVVDGSEFDVAKR------TTAATKLNEGDELIFVQALALEETLVMQSEK 679

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +R+ ++ I    +   GV        + + ++  +   ++V
Sbjct: 680 DFFLRIDISSIPEKKKGAVGVRGMKLGAGDALAAIYLLNAEDVV 723



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 83/247 (33%), Gaps = 15/247 (6%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  +   ++ + +   +           E   + TC   +
Sbjct: 517 AVVEEKKIEEMDVVFLMDRFGYAKTVDVATYERNKEAANT--------ENRYILTCKNTD 568

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  GQ     +  +     R+  G    +L+  +      + +   A        
Sbjct: 569 KICIFTNKGQMHLLKVLDLPYGKFRD-KGTPIDNLSNYNSSEENFVYITNLAAISHSQVL 627

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               SA  +++ G   ++      ++      E    +    E+ ++  SEK F  R   
Sbjct: 628 FGTKSAMLKVVDGSEFDVAKRTTAATKLNEGDELIFVQALALEETLVMQSEKDFFLRIDI 687

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
                  +   G+R   +       AL A++ +N  D ++ +  KG    V +N +R A 
Sbjct: 688 SSIPEKKKGAVGVRGMKLGAG---DALAAIYLLNAED-VVNIEVKGK--EVALNRLRTAG 741

Query: 875 RATKGVV 881
           R TKG  
Sbjct: 742 RDTKGTK 748


>gi|227529214|ref|ZP_03959263.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
 gi|227350860|gb|EEJ41151.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC
           49540]
          Length = 823

 Score =  609 bits (1570), Expect = e-172,   Method: Composition-based stats.
 Identities = 275/804 (34%), Positives = 437/804 (54%), Gaps = 45/804 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +++   M + +  Y+ ++I  RA+PD+RDGLKPV RRILF M + G  ++K + 
Sbjct: 3   DGKIEKMTLEQLMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY+AL R++QDW LR  LIE  GN GS+DGDP AA RYTE
Sbjct: 63  KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPAAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ KDTV+   N+D + +EP VL AR PN+LVNG  GI+ G AT IPT
Sbjct: 123 ARLSKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  V +++NPD  L+ LME I GPDFPTG +I G  GI+ AY TGRG IV+R 
Sbjct: 183 HNLGEVLDALVYLLNNPDASLEKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRIVVRA 242

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE   G R+QI VTEIPY+VNKA ++++I +L   K++  IA+ RDE+DR G R+ I
Sbjct: 243 RTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAI 302

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELKRGA+A  ILN L + T LQ  ++ NMVA++  +P R  L  IL ++++F+++++ RR
Sbjct: 303 ELKRGANAQGILNYLLKNTDLQINYNFNMVAIDEQRPMRVGLKRILISYLSFQKQIIRRR 362

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ LN A+ R H++ GL  A++ LD+V++ IR S N + A+  L+ +            
Sbjct: 363 TQFNLNNAQHRLHIVEGLIKALSILDQVIKTIRGSKNRKDAKENLINQ------------ 410

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            S  Q  AI+ L+L RLT     ++++E   L  +I+E   IL+
Sbjct: 411 --------------YAFSAEQAEAIVTLQLYRLTNTDVTELKDEQKKLNQQIEEFQLILT 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           +   L  ++++E+L++K E   PRRT+I   +    ++ +  + +ED+++ VSH GY+KR
Sbjct: 457 NDQELANVLRREMLAIKKEFGNPRRTKIESHVEKLRVDTKVTVAKEDVILLVSHAGYIKR 516

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  ++A            +R++D+   +   +T   +  F++LG V    V  +    
Sbjct: 517 SSVRSFKAS-----PIDENGLREDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDAR 571

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---IQ 667
            +  G+ +   + L + E I   M     +       ++  T  G ++++  +D+    +
Sbjct: 572 WKDTGEHISQTIGLAENEHIIKAM---VFDKLDQPGTIIMGTSDGQIKQSAFTDYKPGSR 628

Query: 668 INRSGKIAMKLDSRD-EILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                   +KL S +  ++SV+     N+   +L+ +  G  VRF ++ +    G  + G
Sbjct: 629 YKSRTTTGIKLKSDEARLVSVDYYEPTNENRSLLVISHEGYAVRFDVADV-PVTGLRTGG 687

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VR I+L   D      +V                  A   + +G       L        
Sbjct: 688 VRAINLKDDDYATDYTLVSEGQNLAMITQRGAFKEMASSEIETGARARRGELVIHRIKNH 747

Query: 784 NISEERCQELKLKEQFIL-TVSEK 806
                        +  +L  ++++
Sbjct: 748 PHKIVDFLAYDPDKHDVLEIITDR 771



 Score = 68.7 bits (166), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 66/530 (12%), Positives = 166/530 (31%), Gaps = 37/530 (6%)

Query: 366 EEVVVRRTKYL-LNKARDRAHVLVG-LAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             VV  RT+   L   R + +V      +  A L + +  +R +   E       +   +
Sbjct: 237 RIVVRARTEIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDE--TD 294

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSL 480
            S ++  I+L   ++     +  +  +++Q      ++ +   R   +G   I     S 
Sbjct: 295 RSGLRIAIELKRGANAQGILNYLLKNTDLQINYNFNMVAIDEQRPMRVGLKRILISYLSF 354

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I       +  +    +   E L     +       I         +D         
Sbjct: 355 QKQIIRRRTQFNLNNAQHRLHIVEGLIKALSILDQ---VIKTIRGSKNRKDAKENLINQY 411

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S       V L +YR              +    + +  ++ T+   L       +  
Sbjct: 412 AFSAEQAEAIVTLQLYRLTNTDVTELKDEQKKLNQQIEEFQLILTNDQELANVLRREM-- 469

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             + +      + + ++ +  L ++    +                 ++  +  G ++R+
Sbjct: 470 LAIKKEFGNPRRTKIESHVEKLRVDTKVTVA------------KEDVILLVSHAGYIKRS 517

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +  F            L   D  + ++       + + T LG  +  P+  I     ++
Sbjct: 518 SVRSFKASPIDEN---GLREDDYPILIQQTNTLAHLFMFTNLGNVIYRPVHEITDARWKD 574

Query: 721 SVGV--RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           +     + I LA+ + +I   +    D      +        Q              +  
Sbjct: 575 TGEHISQTIGLAENEHIIKAMVFDKLDQPGTIIMGTSDGQIKQSAFTDYKPGSRYKSRTT 634

Query: 779 SSVEGNISEER-----CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + ++    E R       E   + + +L +S +G+  R    D  ++     G+RA ++ 
Sbjct: 635 TGIKLKSDEARLVSVDYYEPTNENRSLLVISHEGYAVRFDVADVPVTGLRTGGVRAINLK 694

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
             +          V++   + +++ +G    +  +EI   +RA +G ++ 
Sbjct: 695 DDDYATD---YTLVSEGQNLAMITQRGAFKEMASSEIETGARARRGELVI 741


>gi|227893711|ref|ZP_04011516.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
 gi|227864571|gb|EEJ71992.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047]
          Length = 818

 Score =  609 bits (1569), Expect = e-172,   Method: Composition-based stats.
 Identities = 273/884 (30%), Positives = 437/884 (49%), Gaps = 93/884 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R++IV TEIP+ VNK+ +++KI E+   K I  IA++RDE+DR G  +V+
Sbjct: 244 KTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVV 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TKY LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKYDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E   L   +++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQTKLNKLVEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E   PRRT+I +     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFSNPRRTQISQESAKVEIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +             +  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDTDNGLPDGDKVIYENTLSTLTN-----LYLFTNRGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +      +   +   + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQI---IRVFAFNNLNADENFLLATNDGYIKQLELANLQPTRT 629

Query: 671 ---SGKIAMKLDSRDE-ILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL S+D  ++ V+        +I L T     +R+ IS I   +G  ++GV
Sbjct: 630 YKSRAMTAIKLKSKDSLLVGVDLVKPNAKKEITLFTHRAYAIRYDISEI-PASGAKAIGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D ++   +V     D                                     
Sbjct: 689 KSANLKDDDYIVGYVLVDSKYLDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      + A+
Sbjct: 718 ------------------ITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKTKPH-RITAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            P   +  + + +     I++  NE  +  R + G  +  T  D
Sbjct: 759 VPYAQDHILHITTSSDRHIKIKTNEYPLGDRYSNGSFVIDTTTD 802



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 14/179 (7%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+VI   +++ + +     +      + +         +T +  S +     +  I
Sbjct: 533 LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGAL 841
                      ++  L  +  G+ K+    + + +    +R+   + A  +   + +  L
Sbjct: 593 IRVFAFNNLNADENFLLATNDGYIKQLELANLQPTRTYKSRA---MTAIKLKSKDSL--L 647

Query: 842 VAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V V  V  N   +I L + +   IR  ++EI  +     GV   +   D+ +V    + 
Sbjct: 648 VGVDLVKPNAKKEITLFTHRAYAIRYDISEIPASGAKAIGVKSANLKDDDYIVGYVLVD 706


>gi|300361707|ref|ZP_07057884.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
 gi|300354326|gb|EFJ70197.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus
           gasseri JV-V03]
          Length = 826

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 278/892 (31%), Positives = 439/892 (49%), Gaps = 93/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y 
Sbjct: 5   TERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE
Sbjct: 65  KAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP 
Sbjct: 125 SRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  V ++ +PD   D LME ++GPDFPTG ++LG  GIK AY TGRG I +R 
Sbjct: 185 HNLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VI
Sbjct: 245 KTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  +++VV +R
Sbjct: 305 ELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVTKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A+  L+ +            
Sbjct: 365 TEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKNAKNNLIAK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    + ++ E   L  +I +  +ILS
Sbjct: 413 --------------YKFTPNQAEAIVSLQLYRLTNTDVNQLKKEQTELNKKIDKFNEILS 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR
Sbjct: 459 DNKVLEKVVVKELNAVKKEFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +++      G       D D V     +ST  ++  F++ G +    V  L    
Sbjct: 519 SSIRSFQSTDTSDNGLP-----DGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETK 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E I   +   E      +L  + AT  G +++  L+D      
Sbjct: 574 WKETGQHLSQEIGLDNDEEI---IRVFEINDLKASLNFLIATNDGYIKQVTLADLQPTRT 630

Query: 671 ---SGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D     +       + +I L T     VRF IS I   +G  +VGV
Sbjct: 631 YKSRAITAIKLKCKDSKVVRIDQVKPDSKQEITLITNQAYAVRFDISEI-PTSGSKAVGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D +++  +      D                                     
Sbjct: 690 KSVNLKDNDYIVNYVLADPKYVDLIN---------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I  ++++G  K+          R+ +G+      K      ++A+
Sbjct: 716 ---------------IGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELKTKPH-RIMAI 759

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               +N  + L +     I +  +E  +  R + G  +     D   +S+  
Sbjct: 760 SSYGENHILHLTTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPISLTL 811


>gi|229916009|ref|YP_002884655.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
 gi|229467438|gb|ACQ69210.1| DNA topoisomerase IV, A subunit [Exiguobacterium sp. AT1b]
          Length = 801

 Score =  608 bits (1568), Expect = e-171,   Method: Composition-based stats.
 Identities = 267/885 (30%), Positives = 443/885 (50%), Gaps = 95/885 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I ++S+   + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K Y K
Sbjct: 5   QHILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHHEGNTNDKPYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ R++QDW LR  LI+  GN GS+DGDP AA RYTE 
Sbjct: 65  SAKTVGNVIGNYHPHGDSSVYEAMVRLSQDWKLRYPLIDMHGNNGSMDGDPAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  +L  + K+TVD+ PN+D S +EP+VL +  PN+L+NG  GI+ G AT IP H
Sbjct: 125 RLSKIAGVMLTSIAKNTVDYTPNFDDSTEEPLVLPSLLPNLLMNGTTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV++  +A +          +E + GPDFPTG  ++G+ GI  A+ TG+G ++IR  
Sbjct: 185 NLTEVLNLAIARLKGQVDIAKDALEYVTGPDFPTGGTVMGKDGILKAFETGKGKVIIRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           S IE+  G REQI +TE+PY+VNKA +++K+ EL  +K++  +A++RDE+DR G RVVIE
Sbjct: 245 SEIEQLKGGREQITITELPYEVNKANLVKKMEELRLDKKVEGVAEVRDETDRTGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ +L+   ++T LQ  ++ NMV++    P++  +I I+ A++   EEVV RRT
Sbjct: 305 LKKEADAEGVLHFFLKHTDLQLAYNYNMVSIVNRTPKQMGIIPIIDAYLKHVEEVVTRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L +A+ RA ++  L  A++ LDE + +IR + +   A+++LM+R             
Sbjct: 365 TFELEQAKKRAEIVDALEQAISVLDETLELIRSAKDKADAKKKLMER------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +E Q  A++ L+L RLT     +++ E  +L  EI    +IL  
Sbjct: 412 -------------FSFTERQAEAVVMLQLYRLTNTDIVELQKEAKALQKEIARLSNILDV 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
            +    +I +EL +++DE    RR+ I   +    ++ E  I  E+ +V VS  GYVKR 
Sbjct: 459 DATKRKLIVKELTALRDEFGDDRRSVIESEVEELKLKTEVMIAVEETMVFVSRDGYVKRA 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y     G        M+++D         T   +L +++ G      V ++P    
Sbjct: 519 SMRSY-----GASSDVLPEMKEKDRPLLTTQAMTTDHLLVWTNKGSYLLIPVHQIPESKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N++ +   +    ++      +   + + +F TK G V+R  L D+    +S
Sbjct: 574 KDAGQHVANLVPIEGEQ----VISADVVSTFDTDAHCLFVTKDGMVKRTPLRDYDAQRKS 629

Query: 672 GK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
              +A+KL   DE++          + L ++ G  + F    +    G+ + GV+ ++L 
Sbjct: 630 KPLMALKLKGDDEVVFAGISDGPGQLFLVSERGYGLWFKEDDV-PVVGQRAAGVKAMNLK 688

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD V                                                       
Sbjct: 689 DGDLVADA---------------------------------------------------- 696

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                   F+L V+++G  K+    D F  +NR+ +G       K ++   +  V PV+ 
Sbjct: 697 FSFFTPPLFVL-VTQRGAVKKMKLEDQFDCTNRNLRGTMLIREVK-SKPHQIRRVLPVHG 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++ + +V  K    +V    + +  R   G  +F       +  V
Sbjct: 755 DETLHIV-GKEKAKQVKTKTLTLLDRYANGSFVFDEDSFGEIEDV 798



 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 60/150 (40%), Gaps = 10/150 (6%)

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           K     + L +   E     ++    E    + + + +   E+ ++ VS  G+ KR S  
Sbjct: 462 KRKLIVKELTALRDEFGDDRRSVIESEVEELKLKTEVMIAVEETMVFVSRDGYVKRASMR 521

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            +        G  +  + ++ E    +        D +++ ++KG+ + +PV++I  +  
Sbjct: 522 SY--------GASSDVLPEMKEKDRPLLTTQAMTTDHLLVWTNKGSYLLIPVHQIPESKW 573

Query: 876 ATKGVVIFST--AKDERVVSVERIRESEIV 903
              G  + +    + E+V+S + +   +  
Sbjct: 574 KDAGQHVANLVPIEGEQVISADVVSTFDTD 603


>gi|325661697|ref|ZP_08150320.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471950|gb|EGC75165.1| hypothetical protein HMPREF0490_01055 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 746

 Score =  608 bits (1567), Expect = e-171,   Method: Composition-based stats.
 Identities = 243/728 (33%), Positives = 406/728 (55%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ +     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   NEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQD+   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 ESRLAKITQEAYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D   A + N +I  + L+  ++GPDFPTG +++ +  + + Y TG G I +
Sbjct: 182 PTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVVNKDDLPSIYETGTGKIKL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG   +E   G ++++V++EIPY +  A + + + +   LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADGRPETMGLRQIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ R+ K LL K   +  +  GL  A   +D ++ I+R S + + A+  L+  +      
Sbjct: 362 LMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVE---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               ++   ++ +      +  +E Q  AILE+RL +L GL  + +  E       I++ 
Sbjct: 418 ----NITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  EL   K      RRT I  G   + +E+ +  +D+++ +   GY
Sbjct: 474 EDILNNYDSMTNVIIDELEGYKKAYARERRTVIENGKEAIYEENKVEEQDVILLLDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +             +     +        V  F++ G +++ KV  +P
Sbjct: 534 AKTVDVATYERNKEAA----------DSENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +   + N+ + +  +     +   E+     +  ++F T+   +++    +F+ 
Sbjct: 584 YGKFRDKSVPIDNLGNYDSAQEEIVYLCAEEEL---KDAKLLFVTRQSMLKQVAGEEFLV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE+++V    +E +I+L T+ G  +RF +S +     + +VGVRG+
Sbjct: 641 SK-RTTAATKLQEEDEVVAVIKVLEEQNIVLQTEGGYFLRFLLSEVPEKK-KGAVGVRGM 698

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 699 KLQKSDRI 706



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   ++            +    +   +S        D         +           
Sbjct: 551 SENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFRDKSVPIDNLGNYDSAQEEIVYL 610

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E +LK+  +L V+ +   K+ +  +F +S R       T  +K+ E   +VAV  V +
Sbjct: 611 CAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKR------TTAATKLQEEDEVVAVIKVLE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              I+L ++ G  +R  ++E+    +   GV      K +R+
Sbjct: 665 EQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRI 706



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 9/207 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E+        ++   + G  +   ++ + +   +           E   +  C    
Sbjct: 512 AIYEENKVEEQDVILLLDRFGYAKTVDVATYERNKEAA--------DSENKHIVPCKNTG 563

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            + + T  G+  +  +S I     R+   V   +L   D      + L A+ +  +    
Sbjct: 564 KVCIFTNTGKMHQVKVSDIPYGKFRDKS-VPIDNLGNYDSAQEEIVYLCAEEELKDAKLL 622

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                +  + ++G+   ++     ++      E       L+EQ I+  +E G+  R   
Sbjct: 623 FVTRQSMLKQVAGEEFLVSKRTTAATKLQEEDEVVAVIKVLEEQNIVLQTEGGYFLRFLL 682

Query: 815 YDFRISNRSGKGIRATDVSKINEIGAL 841
            +     +   G+R   + K + I  +
Sbjct: 683 SEVPEKKKGAVGVRGMKLQKSDRIEQI 709


>gi|255284072|ref|ZP_05348627.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
 gi|255265417|gb|EET58622.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469]
          Length = 748

 Score =  607 bits (1566), Expect = e-171,   Method: Composition-based stats.
 Identities = 248/733 (33%), Positives = 395/733 (53%), Gaps = 27/733 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  ++ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ENTQQQIIRTEYSEIMQKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++   L L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RLQK      L DL K+ V F PN+D + +EP VL  R PN+LVNG  GIAVGM T
Sbjct: 122 YTEARLQKVTQEAFLADLDKNVVPFVPNFDETEKEPEVLPVRLPNLLVNGADGIAVGMVT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D  +A I N +I  + LM+ I+GPDFPTG +++ +  + + Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVIATIKNSNITTEELMQYIQGPDFPTGGIVVNKDELTDIYKTGMGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDR 305
            IRG   +EK    +E +V++EIPY +  A + + + +   LV  K+  DI D+ ++S +
Sbjct: 242 RIRGKVDVEKGKNGKESLVISEIPYTMIGANIGKFLNDVAALVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+EL++ A  + ++N LY+ T L+  FSVNM+A++  +PE   L  I++  + F+
Sbjct: 302 DGIRIVLELRKNADTNNLINMLYKKTRLEDTFSVNMLAVSDGRPETLGLKKIIEHHIDFQ 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  R+ + LL K + +  +  GL  A   +D ++ I+R S + E A+  L+       
Sbjct: 362 FEVNTRKYQTLLEKEQAKREIQEGLIKACDVIDLIIEILRGSKSREQAKECLVNGVTEG- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                  +   S  +      ++ ++ Q  AILE+RL +L GL    ++ E +     I 
Sbjct: 421 -------IRFKSRTSKKQAEQLHFTDAQATAILEMRLYKLIGLEIAALQKEHDETVKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              D+L++   +   I +EL S+K E   PR+T +  G   + +E  +   ++V  +   
Sbjct: 474 RYEDLLNNYGSMAKQIIKELQSLKKEYAVPRKTVVENGEEAVYEEKKLEEMEVVFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY + V    Y   +             +     +        +  F+  G  +  +V  
Sbjct: 534 GYARTVDAQTYERNKETA----------DAESRYVIPCMNTDKICLFTDTGSQHLIRVLD 583

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P G  + +GK + N  + +        + + E          VF T  G V++ + S+F
Sbjct: 584 VPFGKFRDKGKPIDNFCNYSSAREA---IVYVESLQRVKMSLFVFGTAQGMVKQVEGSEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                    A KL   D ++SV    +    +  T+   C+R  I  I     + ++GVR
Sbjct: 641 DVAK-RTIAATKLQEGDRLISVHRMDEAETAVFKTEHDICLRIRIGDI-PLKKKGAIGVR 698

Query: 726 GISLAKGDQVISM 738
           GI L +GD+V +M
Sbjct: 699 GIRLGEGDRVEAM 711



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +G  K+    +F ++ R          +K+ E   L++V  +++ +  +  ++    +
Sbjct: 627 TAQGMVKQVEGSEFDVAKR------TIAATKLQEGDRLISVHRMDEAETAVFKTEHDICL 680

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERV 891
           R+ + +I +  +   GV      + +RV
Sbjct: 681 RIRIGDIPLKKKGAIGVRGIRLGEGDRV 708



 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 65/253 (25%), Gaps = 25/253 (9%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  R      + +   +           E   V  C   +
Sbjct: 514 AVYEEKKLEEMEVVFLMDRFGYARTVDAQTYERNKETA--------DAESRYVIPCMNTD 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I L T  G      +  +     R+  G    +           + + +       +  
Sbjct: 566 KICLFTDTGSQHLIRVLDVPFGKFRD-KGKPIDNFCNYSSAREAIVYVESLQRVKMSLFV 624

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                   + + G   ++      ++               + +  +  +E     R   
Sbjct: 625 FGTAQGMVKQVEGSEFDVAKRTIAATKLQEGDRLISVHRMDEAETAVFKTEHDICLRIRI 684

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR--- 871
            D  +  +   G+R   + + +     V      D +       K   I     EIR   
Sbjct: 685 GDIPLKKKGAIGVRGIRLGEGDR----VEAMYYPDGE-------KDKTILYKEKEIRLDR 733

Query: 872 --IASRATKGVVI 882
             +A R TKG  +
Sbjct: 734 LKVAGRDTKGTKL 746


>gi|331084710|ref|ZP_08333798.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410804|gb|EGG90226.1| hypothetical protein HMPREF0987_00101 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 746

 Score =  607 bits (1565), Expect = e-171,   Method: Composition-based stats.
 Identities = 242/728 (33%), Positives = 407/728 (55%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+ +     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   NEQQVIRTEYSDVMKKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQD+   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGMVLVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K    + L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 ESRLAKITQEVYLADLDKDIVDFVPNFDETEKEPEVLPVRIPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEV+D   A + N +I  + L+  ++GPDFPTG +++ +  + + Y TG G I +
Sbjct: 182 PTHNLGEVIDAVKAYMRNNEITTEELLTYLKGPDFPTGGIVVNKDDLPSIYETGTGKIKL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG   +E   G ++++V++EIPY +  A + + + +   LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVENGKGGKKRLVISEIPYTMIGAGIGKFLNDVCALVEAKKTNDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVLELKKDADIENLKNMLYKKTRLEDTFGVNMLAVADGRPETMGLRQIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ R+ K LL K   +  +  GL  A   +D ++ I+R S + + A+  L+  +      
Sbjct: 362 LMTRKYKTLLAKELAKKEIQEGLIKACDVIDLIIEILRGSKSIKDAKECLIHGTVE---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               ++   ++ +      +  +E Q  AILE+RL +L GL  + +  E       I++ 
Sbjct: 418 ----NITFKTAASKKKAAKLCFTEKQATAILEMRLYKLIGLEIEALMKEHEETLKNIEKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  EL   K      RRT I  G   + +E+ +  +D+++ +   GY
Sbjct: 474 EDILNNYDSMTNVIIDELEGYKKAYARERRTVIENGKEAIYEENKVEEQDVILLLDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V ++ Y   +             +     +        V  F++ G +++ KV  +P
Sbjct: 534 AKTVDVATYERNKEAA----------DSENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +   + N+ + +  +     +   E+     +  ++F T+   +++    +F+ 
Sbjct: 584 YGKFRDKSVPIDNLGNYDSAQEEIVYLCAEEEL---KDAKLLFVTRQSMLKQVAGEEFLV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE++++    +E +I+L T+ G  +RF +S +     + +VGVRG+
Sbjct: 641 SK-RTTAATKLQEADEVVAIIKVLEEQNIVLQTEGGYFLRFLLSEVPEKK-KGAVGVRGM 698

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 699 KLQKSDRI 706



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   ++            +    +   +S        D         +           
Sbjct: 551 SENKHIVPCKNTGKVCIFTNTGKMHQVKVSDIPYGKFRDKSVPIDNLGNYDSAQEEIVYL 610

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C E +LK+  +L V+ +   K+ +  +F +S R       T  +K+ E   +VA+  V +
Sbjct: 611 CAEEELKDAKLLFVTRQSMLKQVAGEEFLVSKR------TTAATKLQEADEVVAIIKVLE 664

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              I+L ++ G  +R  ++E+    +   GV      K +R+
Sbjct: 665 EQNIVLQTEGGYFLRFLLSEVPEKKKGAVGVRGMKLQKSDRI 706



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 68/207 (32%), Gaps = 9/207 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E+        ++   + G  +   ++ + +   +           E   +  C    
Sbjct: 512 AIYEENKVEEQDVILLLDRFGYAKTVDVATYERNKEAA--------DSENKHIVPCKNTG 563

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            + + T  G+  +  +S I     R+   V   +L   D      + L A+ +  +    
Sbjct: 564 KVCIFTNTGKMHQVKVSDIPYGKFRDKS-VPIDNLGNYDSAQEEIVYLCAEEELKDAKLL 622

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                +  + ++G+   ++     ++      E       L+EQ I+  +E G+  R   
Sbjct: 623 FVTRQSMLKQVAGEEFLVSKRTTAATKLQEADEVVAIIKVLEEQNIVLQTEGGYFLRFLL 682

Query: 815 YDFRISNRSGKGIRATDVSKINEIGAL 841
            +     +   G+R   + K + I  +
Sbjct: 683 SEVPEKKKGAVGVRGMKLQKSDRIEQI 709


>gi|225374475|ref|ZP_03751696.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
 gi|225213713|gb|EEG96067.1| hypothetical protein ROSEINA2194_00090 [Roseburia inulinivorans DSM
           16841]
          Length = 746

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 263/744 (35%), Positives = 410/744 (55%), Gaps = 27/744 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           ++E+ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 3   QQEEQIIRTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IYDAL  MAQ++   L L++G GNFGS++GD  AA RY
Sbjct: 63  YRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRY 122

Query: 131 TECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQK      L DL KD VDF PN+D + +EP VL  + PN+LVNG  GIAVGM T+
Sbjct: 123 TEARLQKITQEAFLSDLDKDVVDFVPNFDETEKEPEVLPVKIPNLLVNGSDGIAVGMVTS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            P HNLGEV+DG +A I NPDI+ + +ME I GPDFPTG +I  +  +   Y+TG G I 
Sbjct: 183 TPPHNLGEVIDGVIAYIKNPDINTEQMMEYIPGPDFPTGGIIANKDDLIQIYSTGMGKIK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQ 306
           IRG   +E+  G +E+IV+TEIPY +  A + +    +  LV  K+  DI D+ ++S ++
Sbjct: 243 IRGKVEVEQVKGGKERIVITEIPYTMIGANIGKFLNDVYSLVETKKTNDIVDITNQSSKE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++GA    ++N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ 
Sbjct: 303 GIRIVLELRKGADTQNLINLLYKKTKLEDTFGVNMLAVAEGRPETLGLVPIIRHHVKFQY 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+ + LL K  D+  +  GL  A   +D ++ I+R S N + AR  L     +   
Sbjct: 363 ELATRKYQTLLKKELDKKEIQEGLIKACDVIDLIIEILRGSKNVKDARACLTDGVTD--- 419

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                ++   S+ +      +  +E QT AILE+RL +L GL  + +  +       I E
Sbjct: 420 -----NITFKSAQSEKMASELRFTERQTTAILEMRLQKLIGLEIEALMKDHEDTLKHIAE 474

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL +R+ +  ++ +EL S K +   PR+T I      + +E  I   D+V  +   G
Sbjct: 475 YEDILENRATMAKVLIKELQSYKKQYAVPRKTLIDNLEEAVVEEKKIEEMDVVFLMDRFG 534

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V +SVY   +             +     +        +  F++ G ++  KV  L
Sbjct: 535 YAKTVDVSVYERNKEAA----------DTENRYILTCKNTDKICIFTNKGQMHLLKVLDL 584

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N   L+  +       +  +  +  +  ++F TK   ++    S+F 
Sbjct: 585 PYGKFRDKGIPIDN---LSNYDSSEENFIYIINLGAIIHSRLLFGTKTAMLKMVDGSEFD 641

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   + KL+  DE+L V   T E  +++ ++    +R   S I     + +VGVRG
Sbjct: 642 VAK-RTTASTKLNEDDELLIVHAMTGEETVVMQSEKEMFLRIEASTIPEKK-KGAVGVRG 699

Query: 727 ISLAKGDQVISMAIVLHADADYDE 750
           + L  GD + ++ ++   +    E
Sbjct: 700 MKLNAGDALSNIYVLDGENEQTVE 723



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++    K     +F ++ R       T  +K+NE   L+ V  +   + +++ S+K
Sbjct: 623 LLFGTKTAMLKMVDGSEFDVAKR------TTASTKLNEDDELLIVHAMTGEETVVMQSEK 676

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR-ESEIVDEAESTE 910
              +R+  + I    +   GV        + + ++  +  E+E   E +  E
Sbjct: 677 EMFLRIEASTIPEKKKGAVGVRGMKLNAGDALSNIYVLDGENEQTVEVKGKE 728



 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 79/252 (31%), Gaps = 25/252 (9%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       V    + G  +   +S + +   +           E   + TC   +
Sbjct: 514 AVVEEKKIEEMDVVFLMDRFGYAKTVDVSVYERNKEAA--------DTENRYILTCKNTD 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  GQ     +  +     R+  G+   +L+  D      I +            
Sbjct: 566 KICIFTNKGQMHLLKVLDLPYGKFRD-KGIPIDNLSNYDSSEENFIYIINLGAIIHSRLL 624

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               +A  +++ G   ++      S+      E         E+ ++  SEK    R  +
Sbjct: 625 FGTKTAMLKMVDGSEFDVAKRTTASTKLNEDDELLIVHAMTGEETVVMQSEKEMFLRIEA 684

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI---- 870
                  +   G+R   +   N   AL  ++ ++  ++          + V   E+    
Sbjct: 685 STIPEKKKGAVGVRGMKL---NAGDALSNIYVLDGENE--------QTVEVKGKEVVLNR 733

Query: 871 -RIASRATKGVV 881
            R+ +R TKG  
Sbjct: 734 LRVGNRDTKGTK 745


>gi|224543252|ref|ZP_03683791.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523785|gb|EEF92890.1| hypothetical protein CATMIT_02452 [Catenibacterium mitsuokai DSM
           15897]
          Length = 849

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 260/739 (35%), Positives = 395/739 (53%), Gaps = 41/739 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           EK I  +S+ D M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G   NK Y 
Sbjct: 3   EKNII-MSLEDIMGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMWKEGNLPNKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG++++Y+A+ R++QDW +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 62  KSAKTVGTVIGNYHPHGDSSVYEAMVRLSQDWKMRMPLVDMQGNNGSIDNDPAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  L+ D+ K+TV    N+D +  EP V  A+YPN+LVNG  GI+ G AT+IP 
Sbjct: 122 ARLAPIALDLIKDIDKETVPMALNFDDTEYEPTVFPAKYPNLLVNGATGISAGYATDIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  I +P    D L + I+GPDFPTGA++ G + I  A  TGRG +V+R 
Sbjct: 182 HNLEEVIDATIYRIKHPHCSFDELHQFIKGPDFPTGAIVEGASDIATALRTGRGKVVVRS 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              I +   +  QI++TEIPY+VNKA ++ K+AE+   + I  I ++RDESDR G  + +
Sbjct: 242 RYKIVEQK-NINQILITEIPYEVNKAELVRKMAEIQFNRDIDGIIEVRDESDRNGLCIAV 300

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+   A   LN  ++ T LQ  ++ NM A+   +P    +  IL  ++    EVV +R
Sbjct: 301 DLKKDVDARNTLNYFFKNTDLQKNYNYNMTAIKDKRPVLMGIEDILDGYIKHECEVVTKR 360

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKA++R H++ GL  A++ LDEVV+ IR S +   A+  LM              
Sbjct: 361 SIFDLNKAQEREHIVEGLIKAISILDEVVKTIRASKDKADAKVNLM-------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT      + NE   L   I+    IL+
Sbjct: 407 ------------NAFGFTERQAEAIVTLQLYRLTNTDIVSLENEQKELQALIESLNAILT 454

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  EL  VK +  TPR T I +      +  +  I+ ED+ V+++  GY K+
Sbjct: 455 SEKVLRKVIIDELKGVKKKYPTPRLTEIKDEIMDTSVNQQAMIISEDVYVSITRDGYFKK 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +    Y+A        +    +D D + DLF  +T   +L F++ G      V++L    
Sbjct: 515 ISTRSYKASDE-----NTFGKKDTDMLVDLFEANTLDVILSFTNKGNYCFVPVYKLEDFK 569

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  GK L  ++ L   E+I   +     +    + YVV ++K+G ++R  + DF     
Sbjct: 570 WKDLGKHLSYLIKLGNDEKIIGNILVKSFDL---DQYVVLSSKNGQIKRVSIKDFNVSRF 626

Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S     M L   DE++SV+       I+  TK G    +    I    G  + GV+GI++
Sbjct: 627 SKPLKCMNLKDNDELISVDISDGTKGIITVTKAGYGTLYSEDEI-SILGVKAGGVKGINM 685

Query: 730 AKGDQVISMAIVLHADADY 748
              D+V  M++   + A  
Sbjct: 686 R-DDEVAFMSVFDPSIASS 703



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 71/474 (14%), Positives = 154/474 (32%), Gaps = 83/474 (17%)

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             D + ++  I+D            +++     + + +       G     + L+ +   
Sbjct: 332 IKDKRPVLMGIEDILDGYIKHECEVVTKRSIFDLNKAQEREHIVEGLIKAISILDEVVKT 391

Query: 484 IKECLDILSSRSRLLGII--KQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-REDMVV 540
           I+   D   ++  L+      +        L   R T      L+ E ++     E +  
Sbjct: 392 IRASKDKADAKVNLMNAFGFTERQAEAIVTLQLYRLTNTDIVSLENEQKELQALIESLNA 451

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++    +++V +   +  ++         ++DE     +   S +   +  S       
Sbjct: 452 ILTSEKVLRKVIIDELKGVKKKYPTPRLTEIKDE-----IMDTSVNQQAMIISED----- 501

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR-- 658
             V     G  +            N   +  T M     E++  ++ + F  K       
Sbjct: 502 VYVSITRDGYFKKISTRSYKASDENTFGKKDTDMLVDLFEANTLDVILSFTNKGNYCFVP 561

Query: 659 --RNKLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFPISAI 713
             + +   +  + +     +KL + ++I+    V++   +  ++L++K GQ  R  I   
Sbjct: 562 VYKLEDFKWKDLGKHLSYLIKLGNDEKIIGNILVKSFDLDQYVVLSSKNGQIKRVSIKDF 621

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            V   R S  ++ ++L   D++IS+ I                                 
Sbjct: 622 NV--SRFSKPLKCMNLKDNDELISVDISDGTKG--------------------------- 652

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                     I+TV++ G+G   S  +  I      G++A  V 
Sbjct: 653 --------------------------IITVTKAGYGTLYSEDEISI-----LGVKAGGVK 681

Query: 834 KINEIGALVAVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            IN     VA   V D      ++LV +     R+ +++I    RATKG ++F 
Sbjct: 682 GINMRDDEVAFMSVFDPSIASSLLLVLNPAHFKRIHISDIPACHRATKGTLLFK 735



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             +  I      +    +Q+++  S+ G  KR S  DF + +R  K ++  ++       
Sbjct: 584 GNDEKIIGNILVKSFDLDQYVVLSSKNGQIKRVSIKDFNV-SRFSKPLKCMNLKD---ND 639

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            L++V   +    II V+  G       +EI I      GV   +   DE V  +     
Sbjct: 640 ELISVDISDGTKGIITVTKAGYGTLYSEDEISILGVKAGGVKGINMRDDE-VAFMSVFDP 698

Query: 900 S 900
           S
Sbjct: 699 S 699


>gi|116629642|ref|YP_814814.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238854273|ref|ZP_04644617.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282851153|ref|ZP_06260520.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311110715|ref|ZP_07712112.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
 gi|116095224|gb|ABJ60376.1| DNA topoisomerase IV subunit A [Lactobacillus gasseri ATCC 33323]
 gi|238833084|gb|EEQ25377.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 202-4]
 gi|282557685|gb|EFB63280.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri 224-1]
 gi|311065869|gb|EFQ46209.1| DNA topoisomerase IV, A subunit [Lactobacillus gasseri MV-22]
          Length = 826

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 279/892 (31%), Positives = 440/892 (49%), Gaps = 93/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y 
Sbjct: 5   TERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDKPYK 64

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA RYTE
Sbjct: 65  KAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMRYTE 124

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT IP 
Sbjct: 125 SRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATEIPP 184

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  V ++ +PD   D LME ++GPDFPTG ++LG  GIK AY TGRG I +R 
Sbjct: 185 HNLAEVIDAAVYLLKHPDATTDDLMEFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQVRS 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  +VI
Sbjct: 245 KTTIQDIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLSIVI 304

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  +++VV +R
Sbjct: 305 ELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLTHKKDVVTKR 364

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A+  L+ +            
Sbjct: 365 TEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKNNLIAK------------ 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    + ++ E   L  +I +  +ILS
Sbjct: 413 --------------YEFTPNQAEAIVSLQLYRLTNTDVNQLKQEQTELNKKIDKFNEILS 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVKR 550
               L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY+KR
Sbjct: 459 DNQVLEKVVVKELNAVKKEFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGYLKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  +++      G       D D V     +ST  ++  F++ G +    V  L    
Sbjct: 519 SSIRSFQSTDTSDNGLP-----DGDKVIFEKTMSTLDNLYIFTNKGNLIYRPVHELIETK 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E I   +   E      NL  + AT  G +++  L+D      
Sbjct: 574 WKETGQHLSQEIGLDSDEEI---IRVFEINDLKANLNFLIATNDGYIKQVTLADLQPTRT 630

Query: 671 ---SGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL S++     +       + +I L T     VRF IS I   +G  +VGV
Sbjct: 631 YKSRAITAIKLKSKESKVVRIDQVKPDSKQEITLITNQAYAVRFDISEI-PTSGSKAVGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D +++  +      D                                     
Sbjct: 690 KSVNLKDNDYIVNYVLADPKYVDLIN---------------------------------- 715

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                          I  ++++G  K+          R+ +G+      K      ++A+
Sbjct: 716 ---------------IGIITQRGAFKQLKLNLINKVTRAKRGVLVLRELKTKPH-RIMAI 759

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
               +N  + L +     I +  +E  +  R + G  +     D   +S+  
Sbjct: 760 NSYGENHILHLTTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPISLTL 811


>gi|320528086|ref|ZP_08029251.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
 gi|320131434|gb|EFW23999.1| DNA topoisomerase IV, A subunit [Solobacterium moorei F0204]
          Length = 835

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/794 (33%), Positives = 414/794 (52%), Gaps = 39/794 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +        + D M   +  YA  +I  RA+PD RDGLKPV RRIL+ M   G  W+  Y
Sbjct: 9   DNTKYRPELLEDIMGAGFGRYAKYIIQERALPDARDGLKPVQRRILYAMYHDGNTWDYAY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG+ ++YDA+ RM+QDW +RL LI+  GN GS+D DP AA RYT
Sbjct: 69  RKSAKTVGLVIGNYHPHGDTSVYDAMVRMSQDWKVRLPLIDMHGNNGSIDDDPAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    + +DL K+TV+  PN+D +  EP VL   +P +LVNG  GIA G ATN+P
Sbjct: 129 EARLAKVTQVMEEDLDKNTVEMAPNFDDTEHEPTVLPVPFPVMLVNGATGIAAGYATNMP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVD  +  I NP+  L  +M+I+ GPDFPTG ++ G  GI++A+ TG+G IV+R
Sbjct: 189 PHNLNEVVDATIYRIQNPESALTDVMDILTGPDFPTGGIVQGEAGIRDAFTTGKGRIVVR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               I +     +QI++TEIPY+V K  +++K+ E+   K I  I D+RDESDR+G R+V
Sbjct: 249 SKCEIHEEKS-CQQIIITEIPYEVVKGQLVKKMDEIRVSKDIDGILDVRDESDREGLRIV 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +++++   A++ILN  Y+ T LQ  ++ N VA+   +P +  L+G+L AF+AFR+EVV+R
Sbjct: 308 VDVRKDIDANMILNYFYKNTDLQVYYNYNNVAIIDKRPVQVGLLGLLDAFIAFRKEVVLR 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R++Y L+K   R H++ GL  AV+ LDEV+RIIR S +   A+R LM             
Sbjct: 368 RSRYELDKMEARCHIIEGLMKAVSILDEVIRIIRASQDKGDAKRNLM------------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                              E Q+ AI+ LRL RL+      +R E   L  +I+E   I+
Sbjct: 415 -------------NEFGFDEPQSEAIVSLRLYRLSNTDIITLREEFAELVNQIEETKAII 461

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            + + L  +I +EL +VK E    RRTRI   +   + +    I  E +VVTVS  GY+K
Sbjct: 462 ENENVLHSVIIKELRNVKKEYGQERRTRIEAEVEEINYDKTAMIANERVVVTVSRDGYLK 521

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV +  Y A            ++D D +       T  ++L F+S G      VW++  G
Sbjct: 522 RVSMRSYNAVGD-----QETSIKDGDVLIGTTECDTLDTLLLFTSKGNYASIPVWQIDEG 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G  L  ++ ++  ++I   +     ++     ++V  +  G +++  ++++    
Sbjct: 577 KWKDVGMHLNKVVRIDGEDKIKNAILIKSFDTY---AWIVTVSSAGQIKKTPVNNWQVER 633

Query: 670 RSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +    AM L    E++      +   IL+ +K G   RF I  I    G  S GV+ ++
Sbjct: 634 NNKVMTAMNLSKDAEMIHAFIAYRNQQILMVSKDGYSYRFAIEDI-PATGVKSKGVKAMN 692

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L KGD++    ++   D          +        I      +        ++ N S  
Sbjct: 693 LGKGDKLAWGCVMNAEDPAVLYMTNVGQMKRIHTEEIVFGNRPMKGNLICKRLKTNPSIV 752

Query: 789 RCQELKLKEQFILT 802
              +     + ++ 
Sbjct: 753 TLAKAVSAGEELIF 766



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 13/209 (6%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHADADYDERI 752
           ++  ++ G   R            N+VG +  S+  GD +I       +        +  
Sbjct: 511 VVTVSRDGYLKRVS------MRSYNAVGDQETSIKDGDVLIGTTECDTLDTLLLFTSKGN 564

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                +         D     +       E  I      +      +I+TVS  G  K+T
Sbjct: 565 YASIPVWQIDEGKWKDVGMHLNKVVRIDGEDKIKNAILIKSFDTYAWIVTVSSAGQIKKT 624

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              ++++  R+ K + A ++S   +   ++  F    N QI++VS  G   R  + +I  
Sbjct: 625 PVNNWQVE-RNNKVMTAMNLS---KDAEMIHAFIAYRNQQILMVSKDGYSYRFAIEDIPA 680

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901
               +KGV   +  K +++     +   +
Sbjct: 681 TGVKSKGVKAMNLGKGDKLAWGCVMNAED 709



 Score = 37.8 bits (86), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 11/144 (7%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+L +     +  +    +         + H    + L +   E     +     E    
Sbjct: 441 ITLREE---FAELVNQIEETKAIIENENVLHSVIIKELRNVKKEYGQERRTRIEAEVEEI 497

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                 +   E+ ++TVS  G+ KR S   +               + I +   L+    
Sbjct: 498 NYDKTAMIANERVVVTVSRDGYLKRVSMRSYNA--------VGDQETSIKDGDVLIGTTE 549

Query: 847 VNDNDQIILVSDKGTLIRVPVNEI 870
            +  D ++L + KG    +PV +I
Sbjct: 550 CDTLDTLLLFTSKGNYASIPVWQI 573


>gi|56752405|ref|YP_173106.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
 gi|56687364|dbj|BAD80586.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301]
          Length = 858

 Score =  607 bits (1564), Expect = e-171,   Method: Composition-based stats.
 Identities = 287/947 (30%), Positives = 447/947 (47%), Gaps = 145/947 (15%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I  +       I   ++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M
Sbjct: 1   MTDSIQFNG---ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + K AR+ G+V+GKYHPHG+ A+YDAL R+ QD+S R  L+ G GNFGS+
Sbjct: 58  HELGLTPDRPFRKSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSI 117

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   +H  LL+++G++TVDF  N+D S QEP VL A+ P +L+NG 
Sbjct: 118 DNDPPAAMRYTETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGC 177

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP HNLGE+VD  +A+ID P +    L+  + GPDFPTG  ++G  GI +
Sbjct: 178 SGIAVGMATNIPPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQGILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           AY  GRGSI +RG++ IE+    + +     I+VTE+PYQV+KA  +EK+A+LV + ++ 
Sbjct: 238 AYLEGRGSIPVRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQ 297

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            IAD+RDESDR+G RVVIEL+R A AD +L QLY+ T+LQS F   ++A+   +P++ +L
Sbjct: 298 GIADIRDESDREGMRVVIELRRDAQADKVLEQLYKRTALQSNFGAILLAIVEGQPQQLSL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++FRE  + RR  + L +   R  +L GL  ++++LD ++ I+R SP+  TAR
Sbjct: 358 KQLLEQFLSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTAR 417

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L                               L+E Q  A+L + + R+T L ++ ++
Sbjct: 418 ARL--------------------------QVHFDLNERQADAVLSMPMRRITSLEQEQLQ 451

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E  +L  +      +L  R  LL  +K++L  +K    +P RTR+ E   +       V
Sbjct: 452 QEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFGSPHRTRLPEIPPEAIAAPRQV 511

Query: 535 REDMVVTVSHL-----GYVKRVPLSVYRAQRRGGKGRSGVVMR----------------- 572
               V  +S       G ++   +               +  R                 
Sbjct: 512 TAP-VAPISAPTPATAGPIQGELIFNSATDSAVPDSAPVIAPRFAFQESTWLCLSDREQL 570

Query: 573 --------------------DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                                 DF   L        +L  ++ G  Y+  +  +  G   
Sbjct: 571 QAASATELEPWLKAKSGAQERTDFPKVLQWADPRQDLLVITAEGRAYRRSLREVHPG--- 627

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                + N+L   +               +     ++  +  G V+R  L++  +I+  G
Sbjct: 628 ----PIANLLPTGRQSTAIAATLLL--PLASEERSLLPLSSQGRVKRLALTELAEISNRG 681

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV-RGISLAK 731
              +KL   + I +   C  + ++LL +  G+ +R    +    A R S G  R + L +
Sbjct: 682 LQLLKLAEEEIIQAACLCAPQQEVLLGSSGGRLLR-LSLSELPLASRISRGQPRLLRLRE 740

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           G+Q +    +                                                  
Sbjct: 741 GEQPLGCLSLPSG----------------------------------------------- 753

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
                 Q +L VS  G  KR      R+      G  A   +  ++   L+A+ P     
Sbjct: 754 ------QDLLLVSTLGLVKRLPLGLLRLCRAGDLGNNAFRFT--DKRDRLIALLPAPSQG 805

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
             I  SD+    R  ++ I +     +G  +F+    E + S   + 
Sbjct: 806 LAIFASDQRLWQR-SISTIAVTGTDAEGQTLFNLRSTETLQSATTLE 851


>gi|167756989|ref|ZP_02429116.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
 gi|167703164|gb|EDS17743.1| hypothetical protein CLORAM_02538 [Clostridium ramosum DSM 1402]
          Length = 880

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 280/848 (33%), Positives = 436/848 (51%), Gaps = 94/848 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +K I  +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y 
Sbjct: 11  DKKII-MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYR 69

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G YHPHG+ ++YDA+ R++QDW +R+ L++ QGN GS+D DP AA RYTE
Sbjct: 70  KSAKTVGNVIGNYHPHGDTSVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP 
Sbjct: 130 ARLSAIAVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+D  +  I  P+  L+ LME I+GPDFPTGA++ G+ GI NA+ +GRG +++R 
Sbjct: 190 HNLEEVIDATIHRIKYPNCSLEKLMEFIKGPDFPTGAIVEGKQGILNAFKSGRGKVIVRS 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            S + +      +IV+TEIPY+VNKA ++ KI E+   + I  I ++RDESDR G R+VI
Sbjct: 250 TSEMIEEKT-MNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVI 308

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           +LK+  +    LN LY+ T LQ  ++ NMVA+   +P    +I IL  ++A + +VV R 
Sbjct: 309 DLKKDINVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRS 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + LNKA +R H++ GL  A++ LDEVV+ IR S +   A+  L+++            
Sbjct: 369 SIHDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEK------------ 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            SE Q  AI+ L+L RLT      + NE   L   I    +IL+
Sbjct: 417 --------------YGFSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILN 462

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           S   L  +I  +L  +K +   PR ++I +    + ++++  I+ ED+ V+++  GY+KR
Sbjct: 463 SDEVLRKVIIDQLKGIKKKYPMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKR 522

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           +     +A             ++ D++  ++  +T   +L F+  G      V ++    
Sbjct: 523 ISNRSIKASEG-----IPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFK 577

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  GK +  ++ LN GE+I   +   +       LYV+ ATK+G ++R  L DF     
Sbjct: 578 WKDAGKHVSYLVKLNAGEKIIGTILVKDFNL---PLYVMLATKNGQIKRTNLKDFEVTRY 634

Query: 671 SGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           S     M L + D ++ V+       I+LTTK G    +    +    G  + G+R ++L
Sbjct: 635 SKPLKCMGLKNDDRVVDVKLTDNNQGIILTTKAGYGALYSEQEV-SIVGIKAAGIRAVNL 693

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            K D+++S+ I     +                                           
Sbjct: 694 -KNDELVSLNIFNPLVSSS----------------------------------------- 711

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                     ++ +SE+G  KR    D    NR+ KG      +  ++I  +     V D
Sbjct: 712 ----------LIVISEEGGVKRIKIGDITPCNRATKGTLLYK-NPKSKIIYVKDSVIV-D 759

Query: 850 NDQIILVS 857
           N Q+I V+
Sbjct: 760 NSQLITVT 767



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/478 (14%), Positives = 168/478 (35%), Gaps = 47/478 (9%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           IDL  D +     +     +++Q      ++ ++  R   +G  +I +   +  I++   
Sbjct: 308 IDLKKDINVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTR 367

Query: 488 LDIL-----SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
             I      + R  ++  + + +  + + + T R+++      +   E     E     +
Sbjct: 368 SSIHDLNKANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEKYGFSEKQAEAI 427

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
                   V L +YR                ++ +  L  +     VL         ++ 
Sbjct: 428 --------VMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVL---------RKV 470

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           +     G  +           L++       +   E     +    V  T+ G ++R   
Sbjct: 471 IIDQLKGIKKKYPMP-----RLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRISN 525

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                I  S  I       D ++S+      + +LL T  G  +  P+  I  F  +++ 
Sbjct: 526 ---RSIKASEGIPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAG 582

Query: 723 GVR----GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             +     + L  G+++I   +V   +      +        +  L   +    +     
Sbjct: 583 --KHVSYLVKLNAGEKIIGTILVKDFNLPLYVMLATKNGQIKRTNLKDFEVTRYSKPLKC 640

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             ++ +      +     +  ILT ++ G+G   S  +  I      GIRA ++    + 
Sbjct: 641 MGLKNDDRVVDVKLTDNNQGIILT-TKAGYGALYSEQEVSIVGIKAAGIRAVNL----KN 695

Query: 839 GALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             LV++   N   +  +I++S++G + R+ + +I   +RATKG +++      +++ V
Sbjct: 696 DELVSLNIFNPLVSSSLIVISEEGGVKRIKIGDITPCNRATKGTLLYK-NPKSKIIYV 752


>gi|315038434|ref|YP_004032002.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325956845|ref|YP_004292257.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
 gi|312276567|gb|ADQ59207.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1112]
 gi|325333410|gb|ADZ07318.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus 30SC]
          Length = 818

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 277/892 (31%), Positives = 448/892 (50%), Gaps = 93/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+I+G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDATLEDLMKYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R++IV TEIP+ VNK+ +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++    +VV +R
Sbjct: 304 ELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKHILISYLEHEVDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E   PRRT+I +     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFSNPRRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++      G       D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSIRSYQSTDDADNGLP-----DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +    N+  + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDNDEKI---IRVFVLDKLSANINFLLATNDGYIKQLELANLQPTRT 629

Query: 671 ---SGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D +   +       + +I L T     +R+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSLLVGVDAVKPDAKKEITLFTHRAYAIRYDISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L + D +++  +V +   D                                     
Sbjct: 689 KSANLKEDDYIVNYVLVDNKYVDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      + A+
Sbjct: 718 ------------------ITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKTKPH-RIAAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P   +  + + +     +++  NE  +  R + G  +  T  D    S+E 
Sbjct: 759 VPYAQDHVLHITTTSDRHVKIQTNEYPLGDRYSNGSFVIDTTTDGIPTSIEL 810


>gi|327183631|gb|AEA32078.1| DNA topoisomerase IV subunit A [Lactobacillus amylovorus GRL 1118]
          Length = 818

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 276/892 (30%), Positives = 448/892 (50%), Gaps = 93/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +P+  L+ LM+ ++GPDFPTGA+I+G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPNATLEDLMKYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I+   G R++IV TEIP+ VNK+ +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQDIRGHRQEIVATEIPFDVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+   A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++    +VV +R
Sbjct: 304 ELKKDTDAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKHILISYLEHEVDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E   PRRT+I +     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFSNPRRTQISQESAKVEIDEKALVTDEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             +  Y++      G       D D V     +ST +++  F++ G V    V  L    
Sbjct: 518 SSIRSYQSTDDADNGLP-----DGDKVVYENTISTLSNLYLFTNRGNVIYRPVHELVEAK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +    N+  + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDNDEKI---IRVFVLDKLSANINFLLATNDGYIKQLELANLQPTRT 629

Query: 671 ---SGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D +   +       + +I L T     +R+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSLLVGVDAVKPDAKKEITLFTHRAYAIRYDISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L + D +++  +V +   D                                     
Sbjct: 689 KSANLKEDDYIVNYVLVDNKYVDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      + A+
Sbjct: 718 ------------------ITQRGAFKQFKLKLVNKVSRAKRGVLVLRELKTKPH-RIAAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P   +  + + +     +++  NE  +  R + G  +  T  D    S+E 
Sbjct: 759 VPYAQDHVLHITTTSDRHVKIQTNEYPLGDRYSNGSFVIDTTTDGIPTSIEL 810


>gi|295426265|ref|ZP_06818925.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064004|gb|EFG54952.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus
           amylolyticus DSM 11664]
          Length = 824

 Score =  606 bits (1563), Expect = e-171,   Method: Composition-based stats.
 Identities = 278/892 (31%), Positives = 439/892 (49%), Gaps = 92/892 (10%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K +
Sbjct: 3   NKERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTFDKPF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYT
Sbjct: 63  KKAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K ++ LL D+ K+TV    N+D +  EP VL A++PN+LVNG  GI+ G AT IP
Sbjct: 123 ESRLSKISNLLLQDIDKNTVKMVLNFDDTEYEPTVLPAQFPNLLVNGSTGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  + ++ +P+  L+ LM+ ++GPDFPTGAVI+G  GIK AY TGRG I +R
Sbjct: 183 PHNLAEVIDATIYLLKHPEASLEDLMQFVKGPDFPTGAVIMGTKGIKEAYQTGRGRIQVR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +V
Sbjct: 243 AKTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIV 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A A+ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+V+ +
Sbjct: 303 IELKKNADAENILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHDEDVITK 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RTKY L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L++            
Sbjct: 363 RTKYDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIKE----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +E Q  AI+ L+L RLT    D +  E N L  ++     +L
Sbjct: 412 ---------------FKFTERQAEAIVSLQLYRLTNTDVDALIAEQNDLNKKVAVYQKLL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
           S R+ L   I +EL +VK    +PRRT+I       +++++  +  E + V VS  GY+K
Sbjct: 457 SDRATLEKEIIKELTAVKKNFASPRRTQISHESAKVEIDEKALVADEQVRVLVSRDGYLK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R  L  Y++      G         +            ++  F++ G +    V  L   
Sbjct: 517 RSSLRSYQSSDEADNGLPENDKVVYEKTLSTL-----DNLYLFTNRGNLIYRPVHELTET 571

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--- 666
             +  G+ L   + L   E+I   +   + +    N+  + AT  G +++ KLSD     
Sbjct: 572 KWKETGQHLSQEVGLATDEQI---IRVFDFDKLDKNVDFLMATNDGYIKQVKLSDLQPTR 628

Query: 667 QINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                   AMK+ S D  +       T   +I L T     V++ +S I  F G  ++GV
Sbjct: 629 TYRSRAITAMKMKSEDSKMIRIDLIKTNSGEITLFTHRAYAVKYDVSEISEFGG-KALGV 687

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D V+   +V    AD  +                                  
Sbjct: 688 KSVNLKDDDYVVGYVLVQPEFADLIKVGL------------------------------- 716

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      + A+
Sbjct: 717 ------------------ITQRGAFKQFKLSLVNKVSRAKRGVMVLRELKTKPH-RIAAI 757

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                N  + + +     + +  N+  +  R + G  +     D   VS+E 
Sbjct: 758 AAYGQNHVLKMTTSSDRHMDINTNKFPLGDRYSNGSFVVDPTVDGTPVSLEL 809



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 66/182 (36%), Gaps = 17/182 (9%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L + D+V+   +++ + +     +      + +         +T +  S +   + +  I
Sbjct: 533 LPENDKVVYEKTLSTLDNLYLFTNRGNLIYRPVHELTETKWKETGQHLSQEVGLATDEQI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIG 839
                 +   K    L  +  G+ K+    D      +R  +R+   I A  +   +   
Sbjct: 593 IRVFDFDKLDKNVDFLMATNDGYIKQVKLSDLQPTRTYR--SRA---ITAMKMKSEDS-- 645

Query: 840 ALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            ++ +  +  ++ +I L + +   ++  V+EI        GV   +   D+ VV    ++
Sbjct: 646 KMIRIDLIKTNSGEITLFTHRAYAVKYDVSEISEFGGKALGVKSVNLKDDDYVVGYVLVQ 705

Query: 899 ES 900
             
Sbjct: 706 PE 707


>gi|326692693|ref|ZP_08229698.1| DNA topoisomerase IV subunit A [Leuconostoc argentinum KCTC 3773]
          Length = 812

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 271/883 (30%), Positives = 433/883 (49%), Gaps = 96/883 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P+  L ALM  I+GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPEAPLSALMRYIKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I    G +++I +TE+PY+V K+ ++ KI  +   K +  IA++RDESDR+G  +VIE
Sbjct: 243 TEISDLKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKGVAGIAEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +G +A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF+ FR+EVV++R+
Sbjct: 303 LNKGTNAEGILTYLFKKTDLQISYNFNMVAIHNQRPVTVNLKQGLQAFLDFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ +             
Sbjct: 363 AFELAKAQARQHIVEGLIRMLSILDEVVATIRASQNRKDATQNLIDK------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E  +L  +I     IL+ 
Sbjct: 410 -------------FQFTQPQAEAIVTLQLYRLTNTDVTQLEAEFATLTAKINHLNLILTE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I+ EL ++     TPRR++I   + D  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ESALKDVIRDELTAITKTYTTPRRSQIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            + D+D    +  ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSYKASDADN------GLADDDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QIN 669
           +  G+     L+  + +     +   ++ +      +V  T  G +++  L+D +     
Sbjct: 571 KDTGEHFSQQLANWRPDEYVIQVVAVDNLTQGGAFTIV--TNDGFIKQTTLADMVPKAYK 628

Query: 670 RSGKIAMKLDSRDEILSVETCTQ---ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +A+KL + D  +     T    + D+LL +  G  +RF +S +     R + GV+ 
Sbjct: 629 KKTSMAIKLKTDDSQVVNVAYTPTVTDQDVLLLSHNGVGLRFGLSDVPEIGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D + +  +V   D                                         
Sbjct: 688 MDLRGDDTIQAALMVTSPD----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +  V+E G  K     +   S R+ KG+      K      + A   
Sbjct: 707 -----------QQVAIVAENGAFKYMPVAEINHSKRANKGLL-IFTQKKTVPYHVAAATL 754

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            + +   + +++ +  +  + +++   + R   G  +    K+
Sbjct: 755 FDQDVTALEILTSRWQVQDLQLSDYSPSQRVGNGQYVVDVKKN 797



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 75/247 (30%), Gaps = 25/247 (10%)

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVG 723
           +    RS   A   +  D ++       E D+ +  ++ G   R  + + +     N   
Sbjct: 475 YTTPRRSQIEA---EVEDLVIDTAVTIAEEDVQVLVSRNGYYKRASLRSYKASDADNG-- 529

Query: 724 VRGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
                LA  D  + +  +              + Y               E  +    + 
Sbjct: 530 -----LADDDLPVFVGQLNTTQHLFMFTNKGSVIYRPVHELPDFKWKDTGEHFSQQLANW 584

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD-----FRISNRSGKGIRATDVSK 834
             +  + +    +   +      V+  GF K+T+  D     ++          A  +  
Sbjct: 585 RPDEYVIQVVAVDNLTQGGAFTIVTNDGFIKQTTLADMVPKAYKKKT-----SMAIKLKT 639

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +     VA  P   +  ++L+S  G  +R  ++++      T GV       D+ + + 
Sbjct: 640 DDSQVVNVAYTPTVTDQDVLLLSHNGVGLRFGLSDVPEIGARTAGVKAMDLRGDDTIQAA 699

Query: 895 ERIRESE 901
             +   +
Sbjct: 700 LMVTSPD 706


>gi|226323236|ref|ZP_03798754.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
 gi|225208426|gb|EEG90780.1| hypothetical protein COPCOM_01008 [Coprococcus comes ATCC 27758]
          Length = 746

 Score =  606 bits (1562), Expect = e-171,   Method: Composition-based stats.
 Identities = 254/728 (34%), Positives = 403/728 (55%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  I     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y
Sbjct: 2   EESQIIRTEYSELMKKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDRPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCARI G+ MGKYHPHG+++IY+AL  MAQ++   ++L++G GNFGS++GD  AA RYT
Sbjct: 62  RKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGMILVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL K      L DL KD +DF PN+D + +EP VL  R PN+L+NG  GIAVGMAT+I
Sbjct: 122 EARLAKITQEAYLADLDKDIIDFVPNFDETEKEPAVLPVRIPNLLLNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGE+VD   A + N DI    LM+ I+GPDFPTG +++ +  +   Y TG G I I
Sbjct: 182 PTHNLGEIVDAVKAYMKNNDITTKQLMKYIKGPDFPTGGIVVNKDDLAEIYETGTGKIKI 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQG 307
           RG   +E+  G R++IV++EIPY +  A + + +     LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVDVEEIKGGRKKIVISEIPYTMIGAGIGKFLNDVCNLVETKKTSDIVDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A  D ++N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ E
Sbjct: 302 IRIVIEVKRDADVDNLINMLYKKTRLEDTFGVNMLAVADGRPEVLGLKRIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K +D+  +  GL  A   +D ++ I+R S +   A+  L   +      
Sbjct: 362 LATRKYKTLLKKEQDKKEIQEGLIKACDVIDLIIEILRGSSSIRDAKECLTTGATE---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                +   S  +      +  ++ Q +AILE+RL +L GL  + +  E  +    I + 
Sbjct: 418 ----KIKFKSKRSEKMASMLRFTDRQAQAILEMRLYKLIGLEIEALMKEHETTLANIAKY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I  +L ++K E    R+T+I      + +E+ +  +++V+ +   GY
Sbjct: 474 EDILNNYDSMAQVIIDDLDALKKEYAVKRKTKIENAEEAVFEENKVQEQEVVLLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  SVY   R             +     +        +  F+S G +++ KV  LP
Sbjct: 534 AKTVDGSVYERNREAA----------DKENKYILRCMNTGKLCLFTSDGKMHQIKVMDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  +     +    +         +F TK G +++   S+F  
Sbjct: 584 YGKFRDKGFPIDNVSNFDSTKEEIVYLCDDRELFFSK---FLFVTKQGMIKKVAGSEFQ- 639

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           + +    A KL   D ++S+       D++L T+ G  +RFP   +     + +VGVRG+
Sbjct: 640 VTKRTIAATKLQDEDALVSIRPIRDVQDVVLMTENGFVLRFPAEEVSEKK-KGAVGVRGM 698

Query: 728 SLAKGDQV 735
            L K D V
Sbjct: 699 KLQKNDSV 706



 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L V+++G  K+ +  +F+++ R          +K+ +  ALV++ P+ D   ++L+++ G
Sbjct: 622 LFVTKQGMIKKVAGSEFQVTKR------TIAATKLQDEDALVSIRPIRDVQDVVLMTENG 675

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++R P  E+    +   GV      K++ V  V    E
Sbjct: 676 FVLRFPAEEVSEKKKGAVGVRGMKLQKNDSVEEVYLFEE 714



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 63/207 (30%), Gaps = 9/207 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E+        V+   + G  +    S + +   +           E   +  C    
Sbjct: 512 AVFEENKVQEQEVVLLMDRFGYAKTVDGSVYERNREAA--------DKENKYILRCMNTG 563

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            + L T  G+  +  +  +     R+  G    +++  D      + L  D +       
Sbjct: 564 KLCLFTSDGKMHQIKVMDLPYGKFRD-KGFPIDNVSNFDSTKEEIVYLCDDRELFFSKFL 622

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                   + ++G   ++T     ++   +             Q ++ ++E GF  R  +
Sbjct: 623 FVTKQGMIKKVAGSEFQVTKRTIAATKLQDEDALVSIRPIRDVQDVVLMTENGFVLRFPA 682

Query: 815 YDFRISNRSGKGIRATDVSKINEIGAL 841
            +     +   G+R   + K + +  +
Sbjct: 683 EEVSEKKKGAVGVRGMKLQKNDSVEEV 709


>gi|311113428|ref|YP_003984650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
 gi|310944922|gb|ADP41216.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa
           ATCC 17931]
          Length = 842

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 269/844 (31%), Positives = 408/844 (48%), Gaps = 115/844 (13%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM++S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ +++RL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +PD  L  +M+ I GPD P+G  I+G +GIK+AY +GRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIVGLSGIKDAYESGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             IE+ +  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VI
Sbjct: 257 VSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G +   +L  LY++T L+  F +N VAL   +P+   L+ +L+ ++  R  VV RR
Sbjct: 317 EIKNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQPQTLGLLDLLRVYIDHRLSVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K +DR H++ GL IA+ ++DEV+ IIR S     AR +LM              
Sbjct: 377 TEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMA------------- 423

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ   ILELRL +LT   R ++  E + L  EI E   IL 
Sbjct: 424 -------------VFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILG 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-----------------R 535
           S S L  ++  EL  V ++    RRT +          + +                   
Sbjct: 471 SDSALRELVSDELAEVAEKYGNDRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIAD 530

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V ++  G + R      R                 D  T +   +    +   +S 
Sbjct: 531 EPCWVLLTASGILGRTVGKPMREA-----LVDPGKRIKHDVFTSIVPTTARGEIGAVTST 585

Query: 596 GFVYKEKVWRL------PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +  V  L              G     +++L +GE++  ++P  E         + 
Sbjct: 586 GRMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPLNEV--------LA 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            AT +G ++R      +         +KL  +D +++   C+ +++ + L T+  + + F
Sbjct: 638 LATANGVIKRVNPEYPLNQTEWD--VIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTF 695

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R         + GI L   D VI++ +     A     +   +   A        
Sbjct: 696 DAAKVRPQGRAGGG-IAGIKLGAQDAVIALGVTAPGSAAEVVTVTNGQDGMAS------- 747

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                                    K T   ++    R+  G+R
Sbjct: 748 ----------------------------------------AKVTPLAEYPQKGRATGGVR 767

Query: 829 ATDV 832
           A   
Sbjct: 768 AHRF 771



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 40/274 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  T  G + R       +        +K    D   S+   T   +I   T  G
Sbjct: 530 DEPCWVLLTASGILGRTVGKPMREALVDPGKRIK---HDVFTSIVPTTARGEIGAVTSTG 586

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  + VF   +     + GV+    ++LAKG++++ +  +    A         
Sbjct: 587 RMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPLNEVLALATANGVIK 646

Query: 756 K-HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           + +          D  ++       +     S++    L  +E  +LT           +
Sbjct: 647 RVNPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTF---------DA 697

Query: 815 YDFRIS----------NRSGK-GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
              R                +  + A  V+       +V    V +    +       + 
Sbjct: 698 AKVRPQGRAGGGIAGIKLGAQDAVIALGVTAPGSAAEVV---TVTNGQDGM---ASAKV- 750

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             P+ E     RAT GV        E  +++  +
Sbjct: 751 -TPLAEYPQKGRATGGVRAHRFLTGESKLALAWV 783


>gi|293380598|ref|ZP_06626653.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
 gi|290922845|gb|EFD99792.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 214-1]
          Length = 819

 Score =  606 bits (1561), Expect = e-171,   Method: Composition-based stats.
 Identities = 274/892 (30%), Positives = 442/892 (49%), Gaps = 92/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIKVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNK--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 415 ----------------FTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R+ L   I +EL +VK E   PRRT+I E     +++++  +  E + V +S  GY+KR
Sbjct: 459 DRATLEKEIIKELNAVKKEFANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G                       +  F++ G V    V  L    
Sbjct: 519 SSLRSYQSTNDDDNGLPDGDKVVYKNTLSTLTN-----LYLFTNKGNVIYRPVHELIETK 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +    +   + AT  G +++ +L++      
Sbjct: 574 WKETGQHLSQEIGLDSDEQI---IRVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRT 630

Query: 671 ---SGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D  ++ V+    +N   I L T     +R+ +S I   +G  +VGV
Sbjct: 631 YKSRAMTAIKLKGKDSYVVGVDLIKSDNHKEITLFTHRAYAIRYDVSEI-PTSGAKAVGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D +++  +V     D                                     
Sbjct: 690 KSANLKDDDYIVNYVLVDSKYVDLMHVGL------------------------------- 718

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K N+   +VA+
Sbjct: 719 ------------------ITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK-NKPHRIVAL 759

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P   +  + + +     + +   +  +  R + G  +  T  D   VS+E 
Sbjct: 760 MPYAQDHLLHVTTSSDRHVNIKTTDYPLGDRYSNGSFVIDTTVDGTPVSIEL 811


>gi|295693009|ref|YP_003601619.1| DNA topoisomerase iv, a subunit [Lactobacillus crispatus ST1]
 gi|295031115|emb|CBL50594.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus ST1]
          Length = 818

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/892 (30%), Positives = 442/892 (49%), Gaps = 93/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++  PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKYPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYRTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R+ L   I +EL +VK E   PRRT+I E     +++++  +  E + V +S  GY+KR
Sbjct: 458 DRATLEKEIIKELNAVKKEFANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +             +  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTNDDDNGLPDGDKVVYENTLSTLTN-----LYLFTNKGNVIYRPVHELIETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +    +   + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQI---IRVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRT 629

Query: 671 ---SGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D  ++ V+    +N   I L T     +R+ +S I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKGKDSYVVGVDLIKSDNHKEITLFTHRAYAIRYDVSEI-PTSGAKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D +++  +V     D                                     
Sbjct: 689 KSANLKDDDYIVNYVLVDSKYVDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K N+   +VA+
Sbjct: 718 ------------------ITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK-NKPHRIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P   +  + + +     + +   +  +  R + G  +  T  D   VS+E 
Sbjct: 759 MPYAQDHLLHVTTSSDRHVNIKTTDYPLGDRYSNGSFVIDTTVDGTPVSIEL 810


>gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
 gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1]
          Length = 766

 Score =  605 bits (1560), Expect = e-170,   Method: Composition-based stats.
 Identities = 285/824 (34%), Positives = 426/824 (51%), Gaps = 75/824 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + SYL YA++VI+GRAIPD+RDGLKPV RRIL+ M +M +  +K + KCARI G+ MG+Y
Sbjct: 13  RQSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRY 72

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ AIYDAL RMAQD++LR  L+ GQGNFGS+DGDPPAA RYTE +L K    LL+D
Sbjct: 73  HPHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLED 132

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +  DTVDF PN+D S  EP VL A+ PN+L NG  GIAVG+AT+IP HNL EV D  VA+
Sbjct: 133 IENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVAL 192

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
             N DI ++ LM+ I+GPDFPTG +I+G       Y TGRG + ++  + +EKTS  REQ
Sbjct: 193 AQNQDITVEELMQYIKGPDFPTGGIIVGEVS-PEVYKTGRGQVTVQAKARVEKTSSGREQ 251

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I++TEIPY VNKA +++KIAEL R  ++ +I+DLRDESD++G R+VIELKR A  + +L 
Sbjct: 252 IIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELKRDAKGEAVLK 311

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +LY+ TSL+  F +NMVAL G +P+   L  IL  F   R  V+ RRT++ L KA +R H
Sbjct: 312 KLYKNTSLRKNFPINMVALVGLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEERLH 371

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           ++ GL I + ++D+++  IR S + + A+ +LM                           
Sbjct: 372 IVEGLLICIKDIDKIIETIRASQDTQEAKEKLMS-------------------------- 405

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L+E Q +AIL+LRL RLT L    ++ E + L   IK   +IL ++   + I  +E 
Sbjct: 406 GWNLTEKQAQAILDLRLQRLTSLETSKLQKEHDELIENIKTYKNILENKQERINIFIKET 465

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             + D    PRRT I   + +    D          V+  G+VK + L            
Sbjct: 466 KELADRFKDPRRTFIEGMIKEDTYVDVF--------VTRNGFVKPIELLE----EEKSPI 513

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
            +   ++  +             +   S+ G VY         GS               
Sbjct: 514 VNVASLKFTEG------------LFIVSNKGRVYWTAGSEALSGSSIHM----------- 550

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
              + T             N  ++  T  G++++  L +F    +  +I +KL   +E++
Sbjct: 551 ---KDTDEHVVGAFVREQYNSRLLILTNKGSIKKIPLVEFEYKTQGFQI-LKLSEGEEVV 606

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +     E++IL+ TK G   R     +      +S  ++ I L + D+ IS+  +   D
Sbjct: 607 YISGSQDESEILILTKKGYINRIQTQDVGATTS-SSKAIQCIKLNENDEAISVRALD--D 663

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             +   I    +    +          +   N    +   + +           +L  + 
Sbjct: 664 KIFGLLITEEGYAKKIKLEDIPKKSRTSQGINVLKQKFLNACDLIFYNDDDNFDVLISTF 723

Query: 806 KGFGKRTSSYDF--RISNRSGKGI---RATDVSKINEIGALVAV 844
            G   +        RI   +G G+   +  D+   ++I  +V++
Sbjct: 724 NGSHIKFDIKSLIQRIKVPAGIGVPEEKVIDLKD-DKIYKVVSL 766



 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 83/234 (35%), Gaps = 19/234 (8%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE--ILSVETCTQENDILLTTKLGQCVRFPIS 711
            G ++ +   D           ++L   ++  I++V +      + + +  G+      S
Sbjct: 481 EGMIKEDTYVDVFVTRNGFVKPIELLEEEKSPIVNVASLKFTEGLFIVSNKGRVYWTAGS 540

Query: 712 AIRVFAGRNSVGVRGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
                +G +      I +   D+ V+   +    ++                      T+
Sbjct: 541 E--ALSGSS------IHMKDTDEHVVGAFVREQYNSRLLILTNKGSIKKIPLVEFEYKTQ 592

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
               LK     E              E  IL +++KG+  R  + D   +  S K I+  
Sbjct: 593 GFQILKLSEGEEVV-----YISGSQDESEILILTKKGYINRIQTQDVGATTSSSKAIQCI 647

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            +   NE    ++V  ++D    +L++++G   ++ + +I   SR ++G+ +  
Sbjct: 648 KL---NENDEAISVRALDDKIFGLLITEEGYAKKIKLEDIPKKSRTSQGINVLK 698


>gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
 gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase
          Length = 726

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/518 (50%), Positives = 346/518 (66%), Gaps = 27/518 (5%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
            +   E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G
Sbjct: 233 NLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQG 292

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD 
Sbjct: 293 MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 352

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAV
Sbjct: 353 AAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 412

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TG
Sbjct: 413 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETG 472

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+ 
Sbjct: 473 RGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETS 532

Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++ 
Sbjct: 533 LRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE 592

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR   
Sbjct: 593 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR--- 649

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL++RL RLTGL RD I  E N L   
Sbjct: 650 -----------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNY 686

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           I E   IL+    LL +++ EL  ++D     RRT I 
Sbjct: 687 ISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ 724


>gi|160938078|ref|ZP_02085435.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439072|gb|EDP16827.1| hypothetical protein CLOBOL_02972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 744

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 260/728 (35%), Positives = 403/728 (55%), Gaps = 30/728 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K
Sbjct: 3   EKILRTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMRELHLDHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q++   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQNFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D   A IDNP++    LME + GPDFPTG VI  ++ +   Y TG G I +RG
Sbjct: 182 HNLGEVIDAVQAYIDNPEVTTQELMEFMPGPDFPTGGVIANKSELPQIYETGMGKIKLRG 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              +E  K   D+++++++EIPY +  A + +    +A+LV  K++ D+ D+ ++S+++G
Sbjct: 242 KFEVELGKRKADKDKLIISEIPYTMIGAGINKFLVDVADLVESKKLTDVVDISNQSNKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  D I N LY+ T L+  F VNM+A+   +PE   L GIL+ F+ F+ E
Sbjct: 302 IRIVLELRKDADIDKIKNILYKKTKLEDTFGVNMLAIADGRPETLNLKGILRNFLNFQYE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+   LL K  D+  V  GL  A   +D ++ I+R S N + A+  L        D+
Sbjct: 362 NTERKYNVLLQKEMDKKEVQEGLIAACDCIDLIIAILRGSKNLKDAKACLTT-----GDV 416

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            ++   +            +  +E Q  AILE+RL +L GL    +  E      +I E 
Sbjct: 417 TNIHFKVPGFEE---DAKKLAFTERQASAILEMRLYKLIGLEILALEKEHRETLRKIGEY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL SR+++  +IK++L ++K E  TPRRT I +G   + DE  +  ++MV  +   GY
Sbjct: 474 KKILGSRAQMNRVIKEDLAAIKAEFATPRRTLIEDGPEAVYDESAVAVQEMVFVMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  S Y   +             +     +        +  F++ G +Y+ K   +P
Sbjct: 534 CKLLDKSTYDRNQET----------VDTEQVHVVKCLNTDKICLFAASGSLYQIKAMDVP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+   +  +     +   ED         VFATK   V++    +F  
Sbjct: 584 AGKLRDKGTPIENLSKFDGAKDTIVYLTSAED---MKGRIFVFATKMAMVKQVPSEEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N     A KL   DE+ +V     E ++++ T  G  +RF +  I     + S GVRGI
Sbjct: 641 -NNRVVAATKLQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEI-SMLKKASRGVRGI 698

Query: 728 SLAKGDQV 735
            L K +++
Sbjct: 699 RLTKNEEL 706



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 6/171 (3%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+                 Y             D        +      +         
Sbjct: 555 HVVKCLNTDKICLFAASGSLYQIKAMDVPAGKLRDKGTPIENLSKFDGAKDTIVYLTSAE 614

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            +K +  +  ++    K+  S +F  +NR    + A   +K+ E   L AV PV    ++
Sbjct: 615 DMKGRIFVFATKMAMVKQVPSEEFETNNR----VVAA--TKLQEGDELAAVIPVEGETEV 668

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           ++ +  G  +R  + EI +  +A++GV      K+E +  +  I E+ IVD
Sbjct: 669 VIQTTGGVFLRFALEEISMLKKASRGVRGIRLTKNEELEKLYLIGENPIVD 719



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 62/194 (31%), Gaps = 9/194 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    + G  +    S + +   +           E + V  C   + I L    G   +
Sbjct: 525 VFVMDRFGYCKLLDKSTYDRNQETV--------DTEQVHVVKCLNTDKICLFAASGSLYQ 576

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                +     R+  G    +L+K D      + L +  D   RI       A  + +  
Sbjct: 577 IKAMDVPAGKLRD-KGTPIENLSKFDGAKDTIVYLTSAEDMKGRIFVFATKMAMVKQVPS 635

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  E  +    ++      E         E  ++  +  G   R +  +  +  ++ +G+
Sbjct: 636 EEFETNNRVVAATKLQEGDELAAVIPVEGETEVVIQTTGGVFLRFALEEISMLKKASRGV 695

Query: 828 RATDVSKINEIGAL 841
           R   ++K  E+  L
Sbjct: 696 RGIRLTKNEELEKL 709


>gi|300741347|ref|ZP_07071368.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
 gi|300380532|gb|EFJ77094.1| DNA gyrase, A subunit [Rothia dentocariosa M567]
          Length = 842

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 269/844 (31%), Positives = 408/844 (48%), Gaps = 115/844 (13%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + ++ EM++S+L Y+ +VI  RA+PD RDGLKPV RRIL+ M QMG+  +K +VK
Sbjct: 18  ENIVDIDVSAEMESSFLEYSYSVIYSRALPDARDGLKPVQRRILYMMQQMGLRPDKGHVK 77

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR++GEVMGK HPHG+AAIYDA+ R+AQ +++RL L++G GNFGS+D D PAA RYTE 
Sbjct: 78  SARVTGEVMGKLHPHGDAAIYDAMVRLAQSFAMRLPLVDGHGNFGSLD-DGPAAARYTEA 136

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+  AA  L  DL +D VDF PNYD  F +P VL A +PN+LVNG  GIAVGMATN+  H
Sbjct: 137 RMAPAATALTADLDEDVVDFVPNYDNQFMQPGVLPAAFPNLLVNGTTGIAVGMATNMAPH 196

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+ G   +I +PD  L  +M+ I GPD P+G  I+G +GIK+AY +GRG+   R  
Sbjct: 197 NLREVIAGTRHLIAHPDATLKEIMKFIPGPDLPSGGTIVGLSGIKDAYESGRGTFKTRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
             IE+ +  ++ IVVTE+PY V    ++EKI + V  K++  I+D+ D +DR  G R+VI
Sbjct: 257 VSIEQVTPRKQGIVVTELPYMVGPEKVIEKIKDGVNAKKLTGISDVVDLTDRKHGLRLVI 316

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K G +   +L  LY++T L+  F +N VAL   +P+   L+ +L+ ++  R  VV RR
Sbjct: 317 EIKNGFNPQAVLASLYKHTPLEDSFGINNVALVNGQPQTLGLLDLLRVYIDHRLSVVRRR 376

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K +DR H++ GL IA+ ++DEV+ IIR S     AR +LM              
Sbjct: 377 TEFRLGKHKDRLHLVDGLLIAIVDIDEVIEIIRSSDETAQAREKLMA------------- 423

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+EVQ   ILELRL +LT   R ++  E + L  EI E   IL 
Sbjct: 424 -------------VFDLTEVQANYILELRLRQLTKYSRIELEAERDKLRQEIAELERILG 470

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-----------------R 535
           S S L  ++  EL  V ++    RRT +          + +                   
Sbjct: 471 SDSALRELVSDELAEVAEKYGNDRRTVLKTKDDMQSAIEAVSNGASKAKKSLGLALEIAD 530

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E   V ++  G + R      R                 D  T +   +    +   +S 
Sbjct: 531 EPCWVLLTASGILGRTVGKPMREA-----LIDPGKRIKHDVFTSIVPTTARGEIGAVTST 585

Query: 596 GFVYKEKVWRL------PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           G + +  V  L              G     +++L +GE++  ++P  E         + 
Sbjct: 586 GRMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPLNEV--------LA 637

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            AT +G ++R      +         +KL  +D +++   C+ +++ + L T+  + + F
Sbjct: 638 LATANGVIKRVNPEYPLNQTEWD--VIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTF 695

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +R         + GI L   D VI++ +     A     +   +   A        
Sbjct: 696 DAAKVRPQGRAGGG-IAGIKLGAQDAVIALGVTAPGSAAEVVTVTNGQDGMAS------- 747

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                                    K T   ++    R+  G+R
Sbjct: 748 ----------------------------------------AKVTPLAEYPQKGRATGGVR 767

Query: 829 ATDV 832
           A   
Sbjct: 768 AHRF 771



 Score = 44.8 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 40/274 (14%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  T  G + R       +        +K    D   S+   T   +I   T  G
Sbjct: 530 DEPCWVLLTASGILGRTVGKPMREALIDPGKRIK---HDVFTSIVPTTARGEIGAVTSTG 586

Query: 704 QCVRFPISAIRVFAGRN-----SVGVRG---ISLAKGDQVISMAIVLHADADYDERICYM 755
           + VR  +  + VF   +     + GV+    ++LAKG++++ +  +    A         
Sbjct: 587 RMVRLSVMDLVVFDDSSGTPVLTTGVKATEVVALAKGEKLVGLVPLNEVLALATANGVIK 646

Query: 756 K-HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           + +          D  ++       +     S++    L  +E  +LT           +
Sbjct: 647 RVNPEYPLNQTEWDVIKLKPKDTVIAATVCSSDDNALTLVTQEAKLLTF---------DA 697

Query: 815 YDFRIS----------NRSGK-GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
              R                +  + A  V+       +V    V +    +       + 
Sbjct: 698 AKVRPQGRAGGGIAGIKLGAQDAVIALGVTAPGSAAEVV---TVTNGQDGM---ASAKV- 750

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
             P+ E     RAT GV        E  +++  +
Sbjct: 751 -TPLAEYPQKGRATGGVRAHRFLTGESKLALAWV 783


>gi|227878638|ref|ZP_03996555.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256843236|ref|ZP_05548724.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256850407|ref|ZP_05555835.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|262046444|ref|ZP_06019406.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
 gi|227861758|gb|EEJ69360.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus
           JV-V01]
 gi|256614656|gb|EEU19857.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus 125-2-CHN]
 gi|256712804|gb|EEU27797.1| DNA topoisomerase IV subunit A [Lactobacillus crispatus MV-1A-US]
 gi|260573315|gb|EEX29873.1| DNA topoisomerase IV, A subunit [Lactobacillus crispatus MV-3A-US]
          Length = 819

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 274/892 (30%), Positives = 443/892 (49%), Gaps = 92/892 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q    ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDSNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLSKISNMLLQDIDKQTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L+ LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLEDLMKYVKGPDFPTGAIVMGTKGIKEAYKTGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTTIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ L+KA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLDKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAKYNK--------- 414

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +E Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 415 ----------------FTEKQAEAIVSLQLYRLTNTDVNELIAEQDKLNKLAEKYRKLLS 458

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R+ L   I +EL +VK E   PRRT+I E     +++++  +  E + V +S  GY+KR
Sbjct: 459 DRATLEKEIIKELNAVKKEFANPRRTQISEESAKVEIDEKALVADEQVRVLISRDGYLKR 518

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +             +  F++ G V    V  L    
Sbjct: 519 SSLRSYQSTNDDDNGLPDGDKVVYENTLSTLTN-----LYLFTNKGNVIYRPVHELIETK 573

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +    +   + AT  G +++ +L++      
Sbjct: 574 WKETGQHLSQEIGLDSDEQI---IRVFVFDKLNTDCNFILATNDGYIKQLELANLQPTRT 630

Query: 671 ---SGKIAMKLDSRDE-ILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL  +D  ++ V+    +N   I L T     +R+ +S I   +G  +VGV
Sbjct: 631 YKSRAMTAIKLKGKDSYVVGVDLIKSDNHKEITLFTHRAYAIRYDVSEI-PTSGAKAVGV 689

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +  +L   D +++  +V     D                                     
Sbjct: 690 KSANLKDDDYIVNYVLVDSKYVDLMHVGL------------------------------- 718

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K N+   +VA+
Sbjct: 719 ------------------ITQRGAFKQFKLKLVNKVSRAKRGVLVLRELK-NKPHRIVAL 759

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
            P   +  + + +     + +   +  +  R + G  +  T  D   VS+E 
Sbjct: 760 MPYAQDHLLHVTTSSDRHVNIKTTDYPLGDRYSNGSFVIDTTVDGTPVSIEL 811


>gi|323466443|gb|ADX70130.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           H10]
          Length = 818

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/881 (31%), Positives = 435/881 (49%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +L+
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLA 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +           +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNGLPDGDKVIYENTLSTL-----SNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +S   N   + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQI---IRVFVFDSLDINKNFILATNDGYIKQLELTNLQPTRT 629

Query: 671 ---SGKIAMKLDSRDEI-LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D + + V      +  +I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V     D                                     
Sbjct: 689 KSVNLKDDDYIVGYVLVDSKYLDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      +VA+
Sbjct: 718 ------------------ITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPH-RIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  +  R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLGDRYSNGSFVIDT 799



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 14/179 (7%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+VI   +++ + +     +      + +         +T +  S +     +  I
Sbjct: 533 LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGAL 841
                 +     +  +  +  G+ K+    + + +    +R+   + A  +   N+   L
Sbjct: 593 IRVFVFDSLDINKNFILATNDGYIKQLELTNLQPTRTYKSRA---MTAIKL--KNKDSML 647

Query: 842 VAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + V  +N  D  +I L + +   +R  ++EI  +     GV   +   D+ +V    + 
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVD 706


>gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
 gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15]
          Length = 801

 Score =  605 bits (1559), Expect = e-170,   Method: Composition-based stats.
 Identities = 259/870 (29%), Positives = 446/870 (51%), Gaps = 95/870 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I ++S+   + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G  +++ Y K
Sbjct: 5   QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G V+G YHPHG++++Y+A+ R++Q+W LR  LI+ QGN GS+DGD  AA RYTE 
Sbjct: 65  SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L+ + K TVD+  N+D + +EP+VL +  PN+L+NG  GI+ G AT IP H
Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           + GEV+D  +  I      +D L+  ++GPDFPTG V+ G  GIK A+ TGRG ++IR  
Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGGVVQGLDGIKKAFETGRGKVIIRSR 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE   G R+QI++TE+PY+VNKA +++++ EL  ++++  +A++RDE+DR G RVVIE
Sbjct: 245 ATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A A+ +L+   + T LQ  ++ NMVA++   P +  ++ +L A+++  ++VV+RRT
Sbjct: 305 LKKEADAEGVLHFYLKQTDLQIAYNYNMVAIHERTPRQMGVLALLDAYLSHVKDVVIRRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L +A+ R  V+  L  A++ LDE + +IR + N   A+ +L++R             
Sbjct: 365 SFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIER------------- 411

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  A++ L+L RLT     ++++E   L  EI     IL+ 
Sbjct: 412 -------------FSFTDRQAEAVVMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILND 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
                 +I +EL  +K+++   RR+ +   +    ++ E  I  E+ +V VS  GY+KR 
Sbjct: 459 EKTRNRLIIKELTVLKEQVADKRRSTVEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRS 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  + A            M+++D +       T   V+ ++  G      V +LP    
Sbjct: 519 SMRSFGATND------LPEMKEQDRLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKW 572

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ + N++ L+ G+RI ++      +      + +F T+ G V+R+KLSD+    +S
Sbjct: 573 KDGGQHVANLVPLDPGDRILSVDLVRTFD---ETSHCLFVTRQGMVKRSKLSDYNAQRKS 629

Query: 672 GK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                ++L + DE+L  +  T +  + LTT+ G  + F    +    G  + GV+ I+L 
Sbjct: 630 KPLQGVRLRADDEVLYAKISTGQEQLFLTTQHGFGLWFTEDDV-PVVGVRAAGVKAINLR 688

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D V                                                       
Sbjct: 689 DQDVVAGAI--------------------------------------------------- 697

Query: 791 QELKLKEQFILTVSEKGFGKRTSS-YDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              K     +L ++++G  K+      F++SNR+ +G +       ++   + A+  V  
Sbjct: 698 -GFKQAPNIVL-LTQRGALKKMRLADQFQVSNRALRGTQLLR-DLKSKPHQVAALIDVTQ 754

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             ++IL+  K     + V  +    R + G
Sbjct: 755 AKELILI-GKEQEKTIQVPSLSFLDRLSNG 783



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 77/252 (30%), Gaps = 66/252 (26%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +VF +K+G ++R+ +  F   N   ++      +D +L        + +++ T  G  + 
Sbjct: 506 MVFVSKNGYIKRSSMRSFGATNDLPEM----KEQDRLLYQGQAMTTDHVIVWTVQGNYLL 561

Query: 708 FPISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            P+  +         G    +L     GD+++S+ +V   D                   
Sbjct: 562 IPVHQL-PDTKWKDGGQHVANLVPLDPGDRILSVDLVRTFDETSHC-------------- 606

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                               L V+ +G  KR+   D+    +S 
Sbjct: 607 ------------------------------------LFVTRQGMVKRSKLSDYNAQRKSK 630

Query: 825 --KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             +G+R            ++        +Q+ L +  G  +    +++ +      GV  
Sbjct: 631 PLQGVRL------RADDEVLYAKISTGQEQLFLTTQHGFGLWFTEDDVPVVGVRAAGVKA 684

Query: 883 FSTAKDERVVSV 894
            +    + V   
Sbjct: 685 INLRDQDVVAGA 696



 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
             +     ++    E    + + + +   E+ ++ VS+ G+ KR+S   F  +N      
Sbjct: 474 KEQVADKRRSTVEAEVEELKLKTEVMIAVEETMVFVSKNGYIKRSSMRSFGATN------ 527

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS--- 884
              D+ ++ E   L+        D +I+ + +G  + +PV+++        G  + +   
Sbjct: 528 ---DLPEMKEQDRLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKWKDGGQHVANLVP 584

Query: 885 TAKDERVVSVERIRESEI 902
               +R++SV+ +R  + 
Sbjct: 585 LDPGDRILSVDLVRTFDE 602


>gi|160878453|ref|YP_001557421.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
 gi|160427119|gb|ABX40682.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium phytofermentans
           ISDg]
          Length = 748

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 253/772 (32%), Positives = 420/772 (54%), Gaps = 34/772 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++E + I  +  ++EM+ S+  YA++VI+ RAIPD+RDGLKPV RRIL+ M+++G++  K
Sbjct: 2   KKEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K ARI G+ MGKYHPHG+++IYDAL  M + +S+++ L++G GNFGS+DGD  AA R
Sbjct: 62  PHRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LLD L K  V+F PN+D S +EP VL A  PN+L+NG  GIAVGMATN
Sbjct: 122 YTEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HN  EV++G +A IDNPDI  + LM+ I GPDFPTG  I+    I+N Y TG G + 
Sbjct: 182 MPPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSEDIRNIYETGEGRLK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +R  + IE +   R+ IV+TEIPY V  NK  ++E + +L+++K   +I D+RDES ++G
Sbjct: 242 VRAKTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIE+K+    + +LN LY+ TS++  + VN++A+   +P  F L  ++  FV+F+EE
Sbjct: 302 IRVVIEVKKDRDIENLLNGLYKKTSMEDTYGVNLLAVKDQQPIVFKLKNLVGEFVSFQEE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  +  ++LL+KA  R  ++ GL  A   +D ++ I+R S + + A+  L+  +      
Sbjct: 362 LYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTT---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               ++   +  +      +  +E Q  AIL + L++L GL    +  E  SL   I++ 
Sbjct: 418 ----EINFKTEASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL ++  L  +IK  L   K + + PR T +    +    E+  V ED+ + +   GY
Sbjct: 474 QSILGNKKELFKVIKSNLKEYKKQFNVPRHTVLANMEIAEYVEEVKV-EDIYILIDKFGY 532

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
                      +       S V   +      +  +     +  F++ G +Y+ K  ++P
Sbjct: 533 ----------TKSVDNTSISRVSEDNLKDFVHIVKMKNTDRLCLFTAQGNMYQVKAEKIP 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G  + N+  +++ E     +             ++F TK+G ++     +F  
Sbjct: 583 KCKIKDKGTLIHNLCKVDKEE-----ILLYIAFEDLFESQLLFTTKNGFIKLVSGIEFET 637

Query: 668 INRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                  A KL+  D ++SV           ++ ++L T+    + FP++ +     + S
Sbjct: 638 NRAM-ISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELK-KTS 695

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            GV+GI+L K D+V    + L     ++ +   +     + R  +   ++ +
Sbjct: 696 KGVKGITLEKKDKVAFATVALPETEFFEYQGKELSAKKVRNRKRAAKGQKAS 747



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 66/181 (36%), Gaps = 15/181 (8%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +L     ++ M           +   Y        +    D   +         E  +  
Sbjct: 548 NLKDFVHIVKMKNTDRLCLFTAQGNMYQVKAEKIPKCKIKDKGTLIHNLCKVDKEEILLY 607

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF-- 845
              ++L   E  +L  ++ GF K  S  +F  +NR+         +K+ E   +V+V   
Sbjct: 608 IAFEDLF--ESQLLFTTKNGFIKLVSGIEF-ETNRA-----MISATKLEEADHVVSVLCL 659

Query: 846 ----PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRES 900
                 N + ++IL+++    +  P+ E+    + +KGV   +  K ++V      + E+
Sbjct: 660 SAHTISNPDSKVILLTEDSLSLGFPLTEVSELKKTSKGVKGITLEKKDKVAFATVALPET 719

Query: 901 E 901
           E
Sbjct: 720 E 720


>gi|253580825|ref|ZP_04858088.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847895|gb|EES75862.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 748

 Score =  604 bits (1558), Expect = e-170,   Method: Composition-based stats.
 Identities = 244/730 (33%), Positives = 394/730 (53%), Gaps = 27/730 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIPTDYAEVMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQDFKKGKTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K    + L+DL K+ VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQDVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEVVD   A + N DI +  LM  ++GPDFPTG +++ +  +   Y TG G +
Sbjct: 182 SIPPHNLGEVVDAVKAYMKNNDISVKGLMRYLKGPDFPTGGLVVNKDDLLRIYETGTGKL 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDR 305
            +RG     K  G R+Q+V+TEIPY +  A + + + +   LV  K+  DI D+ ++S +
Sbjct: 242 RVRGKVETVKLKGGRQQLVITEIPYTMIGANIGKFLNDIASLVENKKATDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V++LKR A  + + N LY+ T L+  F VNM+A+   +PE  +L  +++  V F 
Sbjct: 302 EGIRIVLDLKRDADVENLTNMLYKKTKLEDTFGVNMLAVADGRPETLSLKQVIEHHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +V  R+   LLNK +++  +  GL  A   +D ++ I+R S N E  ++          
Sbjct: 362 FDVTTRKYTTLLNKEQEKKEIQEGLIKACDVIDLIIEILRGSKNREQVKK------CLVD 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            + + I     SS        ++ SE Q  AIL++RL +L GL  + ++ +       I 
Sbjct: 416 GVTEGIRFKGKSSEKAAQK--LHFSEKQAAAILDMRLYKLIGLEIEALQADYAETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +  +I +EL  +K E  T RRT I      + +E  +   ++   +   
Sbjct: 474 IYEDILNNYDSMAEVIMKELDQIKKEYGTKRRTVIENAEEVVYEEKKMEEMEVTFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY++ +  S Y   +                   +F       +  F+  G ++  KV  
Sbjct: 534 GYMRTIDKSAYERNKEAA----------NAENKYVFNCMNTDKICIFTDNGKMHSIKVAD 583

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+   + +G    N   L+  +     M +    +S     ++F T     +    ++F
Sbjct: 584 IPLVRFRDKGTPADN---LSNYDSAQERMLYVAPLASVKENTLLFVTAASMCKLVSGAEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                   ++ KL   D ++ V +  +   ++  ++ G  +RF    I     + S+GVR
Sbjct: 641 DVAK-RTIVSTKLAEEDSLIFVGSADEMEQVVFQSEGGYFLRFQKQDISAMK-KTSIGVR 698

Query: 726 GISLAKGDQV 735
           G+ LA+GD++
Sbjct: 699 GMKLAEGDKL 708



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A+   V +           D    +   ++    +   D        ++           
Sbjct: 553 AENKYVFNCMNTDKICIFTDNGKMHSIKVADIPLVRFRDKGTPADNLSNYDSAQERMLYV 612

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                +KE  +L V+     K  S  +F ++ R          +K+ E  +L+ V   ++
Sbjct: 613 APLASVKENTLLFVTAASMCKLVSGAEFDVAKR------TIVSTKLAEEDSLIFVGSADE 666

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +Q++  S+ G  +R    +I    + + GV     A+ +++
Sbjct: 667 MEQVVFQSEGGYFLRFQKQDISAMKKTSIGVRGMKLAEGDKL 708



 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 64/192 (33%), Gaps = 9/192 (4%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
               + G +R    S + +   +           E   V  C   + I + T  G+    
Sbjct: 528 FLMDRFGYMRTIDKSAYERNKEAA--------NAENKYVFNCMNTDKICIFTDNGKMHSI 579

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ I +   R+  G    +L+  D      + +   A   E        ++  +L+SG 
Sbjct: 580 KVADIPLVRFRD-KGTPADNLSNYDSAQERMLYVAPLASVKENTLLFVTAASMCKLVSGA 638

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++      S+               + + ++  SE G+  R    D     ++  G+R
Sbjct: 639 EFDVAKRTIVSTKLAEEDSLIFVGSADEMEQVVFQSEGGYFLRFQKQDISAMKKTSIGVR 698

Query: 829 ATDVSKINEIGA 840
              +++ +++  
Sbjct: 699 GMKLAEGDKLDH 710


>gi|161507593|ref|YP_001577547.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
 gi|160348582|gb|ABX27256.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus DPC 4571]
          Length = 818

 Score =  604 bits (1557), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/881 (31%), Positives = 434/881 (49%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVTTEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +           +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNGLPDGDKVIYENTLSTL-----SNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +S       + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQI---IRVFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRT 629

Query: 671 ---SGKIAMKLDSRDEI-LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D + + V      +  +I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V     D                                     
Sbjct: 689 KSVNLKDDDYIVGYVLVDSKYLDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      +VA+
Sbjct: 718 ------------------ITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPH-RIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  +  R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLGDRYSNGSFVIDT 799



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 14/179 (7%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+VI   +++ + +     +      + +         +T +  S +     +  I
Sbjct: 533 LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGAL 841
                 +    ++  +  +  G+ K+    + + +    +R+   + A  +   N+   L
Sbjct: 593 IRVFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRA---MTAIKL--KNKDSML 647

Query: 842 VAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + V  +N  D  +I L + +   +R  ++EI  +     GV   +   D+ +V    + 
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVD 706


>gi|260101485|ref|ZP_05751722.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
 gi|260084699|gb|EEW68819.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus helveticus
           DSM 20075]
          Length = 818

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/881 (31%), Positives = 434/881 (49%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKDADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +           +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNGLPDGDKVIYENTLSTL-----SNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +S       + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQI---IRVFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRT 629

Query: 671 ---SGKIAMKLDSRDEI-LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D + + V      +  +I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V     D                                     
Sbjct: 689 KSVNLKDDDYIVGYVLVDSKYLDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      +VA+
Sbjct: 718 ------------------ITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPH-RIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  +  R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLGDRYSNGSFVIDT 799



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 14/179 (7%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+VI   +++ + +     +      + +         +T +  S +     +  I
Sbjct: 533 LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGAL 841
                 +    ++  +  +  G+ K+    + + +    +R+   + A  +   N+   L
Sbjct: 593 IRVFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRA---MTAIKL--KNKDSML 647

Query: 842 VAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + V  +N  D  +I L + +   +R  ++EI  +     GV   +   D+ +V    + 
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVD 706


>gi|328466148|gb|EGF37307.1| DNA topoisomerase IV subunit A [Lactobacillus helveticus MTCC 5463]
          Length = 818

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/881 (31%), Positives = 435/881 (49%), Gaps = 93/881 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + 
Sbjct: 4   KERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G +MG +HPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE
Sbjct: 64  KAAKAVGNIMGNFHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K ++ LL D+ K TV    N+D S  EP VL AR+PN+LVNG  GI+ G AT IP 
Sbjct: 124 SRLNKISNMLLQDIDKQTVKMVLNFDDSEYEPTVLPARFPNLLVNGSTGISAGYATEIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  + ++ +PD  L  LM+ ++GPDFPTGA+++G  GIK AY TGRG I +R 
Sbjct: 184 HNLGEVIDATIYLLKHPDASLADLMQFVKGPDFPTGAIVMGTQGIKEAYETGRGRIQVRA 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I++  G R++IV TEIP+ VNKA +++KI E+   K I  IA++RDE+DR G  +VI
Sbjct: 244 KTSIQEIRGHRQEIVATEIPFDVNKALLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVI 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           ELK+ A A  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E+VV +R
Sbjct: 304 ELKKXADAQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILSSYLEHEEDVVTKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           TK+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+ +            
Sbjct: 364 TKFDLNKAEARLEIIQGLIHAMDILDQVIKTIRASKNKADAKKNLIAK------------ 411

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            +  Q  AI+ L+L RLT    +++  E + L    ++   +LS
Sbjct: 412 --------------YKFTANQAEAIVSLQLYRLTNTDVNELIAEQSKLNKLAEKYRKLLS 457

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
            R  L   I +EL +VK E  +PRRT I E      ++++  +  E + V +S  GY+KR
Sbjct: 458 DRKTLEKEIIKELSAVKKEFASPRRTEISEESAKVKIDEKALVADEQVRVLISRDGYLKR 517

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
             L  Y++      G         +           +++  F++ G V    V  L    
Sbjct: 518 SSLRSYQSTDDADNGLPDGDKVIYENTLSTL-----SNLYLFTNHGNVIYRPVHELVETK 572

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L   + L+  E+I   +     +S       + AT  G +++ +L++      
Sbjct: 573 WKETGQHLSQEIGLDSDEQI---IRVFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRT 629

Query: 671 ---SGKIAMKLDSRDEI-LSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                  A+KL ++D + + V      +  +I L T     VR+ IS I   +G  +VGV
Sbjct: 630 YKSRAMTAIKLKNKDSMLIGVNLINPTDKKEITLFTHRAYAVRYNISEI-PTSGSKAVGV 688

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + ++L   D ++   +V     D                                     
Sbjct: 689 KSVNLKDDDYIVGYVLVDSKYLDLMHVGL------------------------------- 717

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                             ++++G  K+         +R+ +G+      K      +VA+
Sbjct: 718 ------------------ITQRGAFKQFKLSLVNKVSRAKRGVLVLRELKTKPH-RIVAL 758

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
            P   +  + + +     I +   E  ++ R + G  +  T
Sbjct: 759 MPYAQDHILHVTTSSDRHIEIKTTEYPLSDRYSNGSFVIDT 799



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 14/179 (7%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+VI   +++ + +     +      + +         +T +  S +     +  I
Sbjct: 533 LPDGDKVIYENTLSTLSNLYLFTNHGNVIYRPVHELVETKWKETGQHLSQEIGLDSDEQI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGAL 841
                 +    ++  +  +  G+ K+    + + +    +R+   + A  +   N+   L
Sbjct: 593 IRVFVFDSLDIKKNFILATNDGYIKQLELTNLQPTRTYKSRA---MTAIKL--KNKDSML 647

Query: 842 VAVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + V  +N  D  +I L + +   +R  ++EI  +     GV   +   D+ +V    + 
Sbjct: 648 IGVNLINPTDKKEITLFTHRAYAVRYNISEIPTSGSKAVGVKSVNLKDDDYIVGYVLVD 706


>gi|318042970|ref|ZP_07974926.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CB0101]
          Length = 834

 Score =  604 bits (1556), Expect = e-170,   Method: Composition-based stats.
 Identities = 271/818 (33%), Positives = 418/818 (51%), Gaps = 51/818 (6%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                D  +++ I  + +  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++
Sbjct: 7   EQPLPDPSDDRRIQPIELHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHEL 66

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ Y KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD D
Sbjct: 67  GLTPDRPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRNPLLDGHGNFGSVDDD 126

Query: 124 PPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           PPAA RYTE RL   A+  +LD++G DTVDF PN+DGS QEP VL A+ P +++NG  GI
Sbjct: 127 PPAAMRYTETRLAPIANEAMLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLILNGCTGI 186

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATNIP HNLGEVVD  +A++  PD+  + L+E++ GPDFPTG  +L  +G+++ Y 
Sbjct: 187 AVGMATNIPPHNLGEVVDALIALVRKPDLSDEKLLELVPGPDFPTGGEVLTGSGVRDTYL 246

Query: 243 TGRGSIVIRGVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           TGRGSI +RGV+HIE+    + +     +V+TE+PYQ++KA  +EK+AE V + +I  IA
Sbjct: 247 TGRGSIPMRGVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKINGIA 306

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           D+RDESDR+G RVV+EL+R A+ + +L +L R T+LQS +   ++AL   KP + TL  +
Sbjct: 307 DIRDESDREGMRVVVELRRDANPETVLGELQRRTALQSNYGAILLALVHGKPIQLTLRQL 366

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ +RE  ++RRT++ L +A DR  V+ GL  A+  L +V+ +I             
Sbjct: 367 LQEFLDYRELTLIRRTRHALKRAEDRLEVVEGLITALNALPKVIEMIT------------ 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                            D +S        + L+E Q  A+L + L RLTGL ++ +R E 
Sbjct: 415 --------------AAPDAASARASLQVHLDLNERQADAVLAMPLRRLTGLEQESLRKEA 460

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  E      +L  R  LL  +  E  ++K    TPRRTR+VEG  ++  +    +  
Sbjct: 461 EDLRQERARLRHLLDERPALLDAMVAEFKALKKRFATPRRTRLVEGGDELVAQRTAAQRP 520

Query: 538 MVVT--------VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR-----DEDFVTDLFIVS 584
                       +   G +        +       GR  +        +      +  +S
Sbjct: 521 NTEVLRQRAFEGLPSDGRLVIQADGQVKVVGPQLLGRLHLDEPAPLGDNPSPARLILPIS 580

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
              ++L F+  G V   +           +   L   L           +          
Sbjct: 581 EKPALLAFTDAGRVALLRWE-----FAGQQPGTLEKFLPEGMNGEQVVQLLPLPSGEQAA 635

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              V   +  G  +R  + DF +++      +KL     +  V  C  + ++++ +  G+
Sbjct: 636 GASVGLLSSDGRFKRLPIEDFQELSGRATSVLKLKDGVTLQRVVLCRDDEELVVASSTGR 695

Query: 705 CVRFPISAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +R  ++       GRN+ G   + L  G+ V+  A V                  A   
Sbjct: 696 MLRLAVNDANLPVMGRNAQGPVLLRLLPGESVVGAAGVSPDGCVLLASRSGQLKRLAANS 755

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
           L      +I  +    S  G+   +  ++       +L
Sbjct: 756 LRRCQRGDIGQIGVRFSQRGDQLIDLREDRSAVVAAVL 793



 Score = 65.6 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +     +  +S  G  KR    DF+ +S R+        +     +  +V      D+++
Sbjct: 633 QAAGASVGLLSSDGRFKRLPIEDFQELSGRATS---VLKLKDGVTLQRVV---LCRDDEE 686

Query: 853 IILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++ S  G ++R+ VN+  + +  R  +G V+      E VV    +   
Sbjct: 687 LVVASSTGRMLRLAVNDANLPVMGRNAQGPVLLRLLPGESVVGAAGVSPD 736



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 74/203 (36%), Gaps = 26/203 (12%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   G+QV+ +  +   +      +  +      +RL   D +E++          + 
Sbjct: 616 GMN---GEQVVQLLPLPSGEQAAGASVGLLSSDGRFKRLPIEDFQELSGRATSVLKLKDG 672

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVA 843
              +   L   ++ ++  S  G   R +  D    +  R+ +G     +       ++V 
Sbjct: 673 VTLQRVVLCRDDEELVVASSTGRMLRLAVNDANLPVMGRNAQGPVLLRLLPGE---SVVG 729

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASR--ATK-GVV-------IFSTAKD-ERVV 892
              V+ +  ++L S  G L R+  N +R   R    + GV        +    +D   VV
Sbjct: 730 AAGVSPDGCVLLASRSGQLKRLAANSLRRCQRGDIGQIGVRFSQRGDQLIDLREDRSAVV 789

Query: 893 SVE-------RIRESEIVDEAES 908
           +         R+  +E+  E ++
Sbjct: 790 AAVLNDGRSLRLDTAELQAEDDT 812


>gi|58337413|ref|YP_193998.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus NCFM]
 gi|227904046|ref|ZP_04021851.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
 gi|58254730|gb|AAV42967.1| DNA topoisomerase IV subunit C [Lactobacillus acidophilus NCFM]
 gi|227868065|gb|EEJ75486.1| DNA topoisomerase IV subunit A [Lactobacillus acidophilus ATCC
           4796]
          Length = 816

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 275/883 (31%), Positives = 436/883 (49%), Gaps = 93/883 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I  + +   M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M Q G  ++K + K
Sbjct: 5   ERIREMPLEQVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYQDGNTYDKPFKK 64

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG YHPHG+++IY AL  ++QDW +R  L+E  GN GS+DGD PAA RYTE 
Sbjct: 65  AAKAVGNIMGNYHPHGDSSIYGALVHLSQDWKMREPLVEMHGNNGSMDGDGPAAMRYTES 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K ++ LL D+ KDTV+   N+D +  EP VL AR+PN+LVNG  GI+ G AT IP H
Sbjct: 125 RLSKISNMLLQDIDKDTVNMVLNFDDTEYEPTVLPARFPNLLVNGSTGISSGYATEIPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+D  + ++ +P+  L+ LM  ++GPDFPTGA+I+G  GIK AY TGRG I +R  
Sbjct: 185 NLGEVIDATIYLLKHPNASLEDLMNYVKGPDFPTGAIIMGTKGIKEAYKTGRGRIQVRAK 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           ++I+   G R++IVVTEIP++VNK+ +++KI E+   K I  IA++RDE+DR G  +VIE
Sbjct: 245 TNIQDIRGHRQEIVVTEIPFEVNKSLLVKKIDEIRLNKEIDGIAEVRDETDRHGLSIVIE 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++   E VV +RT
Sbjct: 305 LKKDADSQNILNYLFKNTDLQVSYNFNMVAIDHMTPVQVGLKRILASYLEHEEAVVTKRT 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ LNKA  R  ++ GL  A+  LD+V++ IR S N   A++ L+               
Sbjct: 365 KFDLNKAEARLEIIQGLIHAMDILDKVIKTIRASKNKSDAKKNLIA-------------- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT    D +  E   L    ++   +LS 
Sbjct: 411 ------------SYDFTENQAEAIVSLQLYRLTNTDVDALIAEQTKLNKLAEKYRKLLSD 458

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRV 551
           R  L   I +EL +VK E D PRRT+I E     +++++  +  E + V +S  GY+KR 
Sbjct: 459 RKTLEKEIIKELSTVKKEFDNPRRTQISEQSAKVEIDEKALVADEKVRVLISRDGYLKRS 518

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y++      G         +             +  F++ G V    V  L     
Sbjct: 519 SIRSYQSTDDADNGLPDGDKVIYENTLSTLTN-----LYLFTNRGNVIYRPVHELVETKW 573

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QI 668
           +  G+ L   + L+  E+I   +     +    N   + AT  G +++ +L++       
Sbjct: 574 KETGQHLSQEIGLSSDEKI---IRVFAFDDLNTNSNFLLATNDGYIKQLELANLQPTRTY 630

Query: 669 NRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                 A+ L S + +   + +     + +I L T     VR+ I+ +   +G  + GV+
Sbjct: 631 RSRAMSAINLKSNNSLLVGVDLIAPNADKEITLFTNRAYAVRYNINEV-PSSGAKAAGVK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++L   D ++   +V +   D  +                                   
Sbjct: 690 SVNLKDDDYIVGYVLVDNKYVDLIKVGL-------------------------------- 717

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                            ++++G  K+         +R+ +G+      K      +VA+ 
Sbjct: 718 -----------------ITQRGAYKQFDLNLVNKVSRAKRGVLVLRELKTKPH-RIVAIM 759

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           P   N  + + +     I +  NE  +  R + G  +  T  D
Sbjct: 760 PYAQNHILDITTSSDRHIEIKTNEHPMGDRYSNGSFVVDTTTD 802



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 68/181 (37%), Gaps = 18/181 (9%)

Query: 729 LAKGDQVI---SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L  GD+VI   +++ + +     +      + +         +T +  S +   S +  I
Sbjct: 533 LPDGDKVIYENTLSTLTNLYLFTNRGNVIYRPVHELVETKWKETGQHLSQEIGLSSDEKI 592

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYD------FRISNRSGKGIRATDVSKINEIG 839
                 +        L  +  G+ K+    +      +R  +R+   + A ++   N + 
Sbjct: 593 IRVFAFDDLNTNSNFLLATNDGYIKQLELANLQPTRTYR--SRA---MSAINLKSNNSL- 646

Query: 840 ALVAVFPV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            LV V  +  N + +I L +++   +R  +NE+  +     GV   +   D+ +V    +
Sbjct: 647 -LVGVDLIAPNADKEITLFTNRAYAVRYNINEVPSSGAKAAGVKSVNLKDDDYIVGYVLV 705

Query: 898 R 898
            
Sbjct: 706 D 706


>gi|239626402|ref|ZP_04669433.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516548|gb|EEQ56414.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 744

 Score =  603 bits (1555), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/728 (35%), Positives = 406/728 (55%), Gaps = 30/728 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + K
Sbjct: 3   EKIIRTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLDHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q++   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQEFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAQEVYLKDLDK-TVNFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD   A ID+PDI  + LME + GPDFPTG +I  ++ +   Y TG G I +RG
Sbjct: 182 HNLGEVVDAVRAYIDDPDISTEQLMEYMPGPDFPTGGIIANKSELPVIYETGAGKIKLRG 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              +E  K   D++++V+TEIPY +  A + +    IA+LV  K++ D+ D+ ++S+++G
Sbjct: 242 KFEVELGKRKADKDKLVITEIPYTMIGAGINKFLVDIADLVESKKLTDVVDISNQSNKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  + I N LY+ T  +  F VNM+A+ G +PE  +L GIL+ F+ F+ E
Sbjct: 302 IRIVLELRKDADIEKIKNILYKKTKFEDTFGVNMLAIAGGRPETLSLKGILRNFLDFQYE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+   LL K  D+  V  GL  A   +D ++ I+R S N + A+  L     +    
Sbjct: 362 NTERKYNVLLQKEMDKKEVQEGLITACDCIDLIIAILRGSKNLKDAKACLTNGDVS---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               ++             ++ +E Q  AILE+RL +L GL    +  E      +I   
Sbjct: 418 ----NIRFKVQGFEEDAKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIAGY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL SR  +  +IK +L ++K+E   PRRT I +G   + DE  +  +++V  +   GY
Sbjct: 474 KKILGSRGEMNRVIKDDLAAIKEEFSVPRRTLIEDGPEAVYDESAVQVQEVVFVLDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  S Y   +             +     +        +  F++ G +Y+ KV  +P
Sbjct: 534 CKLLDKSTYERNQET----------VDTEQVHVVRCLNTDKICLFAASGNLYQIKVMDVP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+   +  +     +   +D        +VFATK   V++    +F  
Sbjct: 584 AGKLRDKGVPIENLSKYDGAKDSIVYLTCAQDL---KGATLVFATKMAMVKQVPAEEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N     A KL   D+++S+     + +++L T  G  +RFP+  I V   + S GVRGI
Sbjct: 641 -NNRMVAATKLQEGDQVISILPVEGQEEVVLQTTSGVFLRFPLEEISVLK-KASRGVRGI 698

Query: 728 SLAKGDQV 735
            LAK +++
Sbjct: 699 KLAKNEEL 706



 Score = 72.9 bits (177), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 85/257 (33%), Gaps = 62/257 (24%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    + G  +    S + +   +           E + V  C   + I L    G   +
Sbjct: 525 VFVLDRFGYCKLLDKSTYERNQETV--------DTEQVHVVRCLNTDKICLFAASGNLYQ 576

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             +  +     R+  GV   +L+K D                                  
Sbjct: 577 IKVMDVPAGKLRD-KGVPIENLSKYD---------------------------------- 601

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                           +          LK   ++  ++    K+  + +F  +NR     
Sbjct: 602 -------------GAKDSIVYLTCAQDLKGATLVFATKMAMVKQVPAEEFETNNR----- 643

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
                +K+ E   ++++ PV   ++++L +  G  +R P+ EI +  +A++GV     AK
Sbjct: 644 -MVAATKLQEGDQVISILPVEGQEEVVLQTTSGVFLRFPLEEISVLKKASRGVRGIKLAK 702

Query: 888 DERVVSVERIRESEIVD 904
           +E +  +  I ++ ++D
Sbjct: 703 NEELEKLYLIGDNPVID 719


>gi|323342061|ref|ZP_08082294.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464486|gb|EFY09679.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 822

 Score =  603 bits (1554), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/910 (30%), Positives = 452/910 (49%), Gaps = 109/910 (11%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +  + I D +   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M      ++K Y
Sbjct: 2   SHDSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++Y+A+ RM+Q W + + LI+ QGN GS+D DP AA RYT
Sbjct: 62  RKSAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K +  LL+++ ++ V F  N+D    EP VL ARYPN+LVNG  GIA G ATNIP
Sbjct: 122 EARISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  + NP+  ++ +M +++GPDFPTGA+I G+ GI++    G+G IV+R
Sbjct: 182 PFNLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGAIIQGQEGIEDIIRKGKGRIVVR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI---ADLRDESDRQGY 308
             + I +     +QIV+TE+PY+V K+ ++ KI EL   K         D+RDESDR G 
Sbjct: 242 AKAEIVENKS-MKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGL 300

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI+ KR A+ + ILN  Y+YT LQ  ++ NMVA+   +P+   L+ +L A++ FR+EV
Sbjct: 301 RIVIDCKRDANVESILNLFYKYTELQVYYNANMVAIVDQRPKVCGLLEVLDAYLKFRQEV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+ R+KY   +   R H+L GL  A +NLDE++ +IR S N   +R  +M          
Sbjct: 361 VLNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAE-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                                +E Q  AI++L+L RL+    + +R+E   L  E++   
Sbjct: 413 ------------------FGFTEAQATAIVDLQLYRLSSTDINALRDEFAKLANELEYLD 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLG 546
            ++++   L  +I +E + +K+  DTPRR+ I      L+++    I  E ++VTVS  G
Sbjct: 455 LVINNIDMLNNMIVKEFMEIKEAFDTPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K+V L  Y     G   +  + + DED       V T   ++F +S G      V  +
Sbjct: 515 YLKKVSLRSY-----GSSQKDVIALMDEDMPVFSSEVETTDYLVFVTSRGRYGMILVHEI 569

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +  G  +   +  +  E+I ++      ++     ++V +T  G +++  +S+  
Sbjct: 570 DEARWRDTGSHINQYMKCDPNEKIISVFTLKSFDTY---RFIVTSTASGMIKKTAISELE 626

Query: 667 QINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               +     MKL   DE++     + +  +LL +K GQC+R  ++ I     R + GV 
Sbjct: 627 VKRTNRLYDVMKLGKHDELVGAVITSNDEHLLLVSKEGQCMRLDLAEINPIGLR-AKGVI 685

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L   D+V+S   +                                            
Sbjct: 686 GMKLKLNDRVVSTMGLSD------------------------------------------ 703

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      E  ++ VS++   KR  + D  I+NR+ +G     + K N    L  +F
Sbjct: 704 -----------ESEVVFVSDRFQMKRIKAQDIAINNRATQGTSIVKMVKSNPH-CLAELF 751

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE--------RVVSVERI 897
             N  D I++ +D  ++I  P+ ++ I S       +  T + +         VV V  I
Sbjct: 752 VGNIQDHILIYNDHTSII--PIKDVPIMSADATFSTV--TTEKDFSILRPLVHVVKVA-I 806

Query: 898 RESEIVDEAE 907
            + E     E
Sbjct: 807 PKVEDKSVTE 816


>gi|257054878|ref|YP_003132710.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
 gi|256584750|gb|ACU95883.1| DNA topoisomerase IV subunit A [Saccharomonospora viridis DSM
           43017]
          Length = 827

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 287/875 (32%), Positives = 418/875 (47%), Gaps = 108/875 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +    +T E++ SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   N 
Sbjct: 17  DQAGARVFDNPVTTEIEESYLEYAYSVIHSRALPDARDGLKPVHRRILYSMYESGYRPNH 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK +R+ G+VMG+YHPHG+ AIYDA+ R+AQD+S+ + L++G GNFGS D D PAA R
Sbjct: 77  AYVKSSRVVGDVMGRYHPHGDTAIYDAMVRLAQDFSMNVPLVDGHGNFGSPD-DGPAASR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  L+D+LG+DTVDFRPNYDGS QEP VL A +PN+LVNG  GIAVGMATN
Sbjct: 136 YTEARMSSEAMLLVDELGEDTVDFRPNYDGSLQEPSVLPAAFPNLLVNGTSGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNLGE+V     +I++P+  LD LME + GPD PTG  +LG   ++ AY TGRG + 
Sbjct: 196 MIPHNLGEIVAAARWLINHPNASLDKLMEFVPGPDLPTGGQLLGLDQVRKAYETGRGVVR 255

Query: 250 IRGVSHIEKTSGDREQ-IVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDR-Q 306
           +R  +      G R Q I VTE+PY V    ++E+I E V + KR+  IAD++D +DR  
Sbjct: 256 MRAKATTGPIEGSRRQGITVTELPYGVGPEKVIERITEEVNKTKRLTGIADVKDLTDREN 315

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++VIE K G +   +L  LYR T L+  F +N + L   +P    L  +L+ F+A R 
Sbjct: 316 GTKLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPRTLGLKELLEVFLAHRY 375

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT+Y   K  +R H++ GL  A+ ++D+V+++IR S N + A+  LM+R      
Sbjct: 376 EVVTRRTRYRRRKREERLHLVEGLLKALVDIDKVIKLIRGSENAQAAKEGLMKR------ 429

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSEVQ   IL+  L RLT   + ++ +E + L  EI E
Sbjct: 430 --------------------FKLSEVQAAYILDTPLRRLTKYDKLELESEQDRLRKEIAE 469

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMV 539
             +IL     L  ++ +EL  V  +   PRRT +++G L                 +   
Sbjct: 470 LTEILDDEKVLKRVVSKELAKVAKDFAVPRRTALIDGDLKEVLAASKPAGPLEVADDPCQ 529

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G V R       A     +GR        D +  +   +    VL  ++ G  +
Sbjct: 530 VILSSTGLVARTAAESEEAV----EGRRRSGRARHDAIAAMVHTTARGQVLLVTNRGRAF 585

Query: 600 K---EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED-ESSWNNLYVVFATKHG 655
           K     +  LP  S     +  +++  L   ER   ++      E +  +  +   T+HG
Sbjct: 586 KTDVLPLPVLPESSGTVSLRDGVDVRELAPLERDERVVGLAPLGEQAQGSPGLALGTRHG 645

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIR 714
            V+       +         + L   DE++           +   T     +RF  S +R
Sbjct: 646 VVKVCAPDWPV--RSDEFDVITLKDGDEVVGATWLTDGAETLTFVTSQASLLRFDASLVR 703

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G    GV GI+L K  +V+    V   DA++ E                        
Sbjct: 704 P-QGLRGGGVAGINLPKDSEVVFFGAVRTDDAEHGEP----------------------- 739

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNRSGKGIRATDVS 833
                                     + V+  G   K T    +    R+  G+RA    
Sbjct: 740 --------------------------MVVTATGETVKVTPLSQYPAKGRATGGVRAHRFL 773

Query: 834 KINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVP 866
           K      L  V   PV         + +G  + +P
Sbjct: 774 KGETRLVLAWVGPRPVGS-------TKRGESVELP 801



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 97/269 (36%), Gaps = 24/269 (8%)

Query: 644 NNLYVVFATKHGNVRRN--KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           ++   V  +  G V R   +  + ++  R    A      D I ++   T    +LL T 
Sbjct: 525 DDPCQVILSSTGLVARTAAESEEAVEGRRRSGRA----RHDAIAAMVHTTARGQVLLVTN 580

Query: 702 LGQCVR---FPISAIRVFAG----RNSVGVR-GISLAKGDQVISMAIVLHADADYDERIC 753
            G+  +    P+  +   +G    R+ V VR    L + ++V+ +A     +        
Sbjct: 581 RGRAFKTDVLPLPVLPESSGTVSLRDGVDVRELAPLERDERVVGLA--PLGEQAQGSPGL 638

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +       ++ + D    +   +  +++          L    + +  V+ +    R  
Sbjct: 639 ALGTRHGVVKVCAPDWPVRSDEFDVITLKDGDEVVGATWLTDGAETLTFVTSQASLLRFD 698

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIR-VPVN 868
           +   R     G G+   ++ K +    +V    V  +D    + ++V+  G  ++  P++
Sbjct: 699 ASLVRPQGLRGGGVAGINLPKDS---EVVFFGAVRTDDAEHGEPMVVTATGETVKVTPLS 755

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERI 897
           +     RAT GV      K E  + +  +
Sbjct: 756 QYPAKGRATGGVRAHRFLKGETRLVLAWV 784



 Score = 44.8 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 66/230 (28%), Gaps = 39/230 (16%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA----------IVLHADAD 747
           + +  G   R    +     GR   G R     + D + +M           +     A 
Sbjct: 531 ILSSTGLVARTAAESEEAVEGRRRSG-RA----RHDAIAAMVHTTARGQVLLVTNRGRAF 585

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             + +       +   +   D  ++  L      E  +      E       +   +  G
Sbjct: 586 KTDVLPLPVLPESSGTVSLRDGVDVRELAPLERDERVVGLAPLGEQAQGSPGLALGTRHG 645

Query: 808 FGKR------TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKG 860
             K         S +F         +         +   +V    + D  + +  V+ + 
Sbjct: 646 VVKVCAPDWPVRSDEFD--------VITLK-----DGDEVVGATWLTDGAETLTFVTSQA 692

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +L+R   + +R       GV   +  KD  VV    +R     D+AE  E
Sbjct: 693 SLLRFDASLVRPQGLRGGGVAGINLPKDSEVVFFGAVR----TDDAEHGE 738


>gi|315653531|ref|ZP_07906451.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
 gi|315488893|gb|EFU78535.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners ATCC
           55195]
          Length = 831

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLTFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSDGVPVAL 812


>gi|225388932|ref|ZP_03758656.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
 gi|225045014|gb|EEG55260.1| hypothetical protein CLOSTASPAR_02673 [Clostridium asparagiforme
           DSM 15981]
          Length = 741

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 258/736 (35%), Positives = 412/736 (55%), Gaps = 30/736 (4%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K 
Sbjct: 1   KILKTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+ MGKYHPHG+++IY+ L  ++Q++   + L++G GNFGS++GD  AA RYTE R
Sbjct: 61  ARIVGDTMGKYHPHGDSSIYETLVVLSQEFKKGMTLVDGHGNFGSIEGDGAAAMRYTEAR 120

Query: 135 LQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L+K A  + L DL K TVDF PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP H
Sbjct: 121 LEKFAEEVYLKDLDK-TVDFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPPH 179

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVVD   A ID+PDI  + LME++ GPDFPTG +I  ++ +   Y TG G I +RG 
Sbjct: 180 NLGEVVDAVDAYIDDPDISTEKLMELMPGPDFPTGGIIANKSDLPAIYETGSGKIKLRGK 239

Query: 254 SHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQGY 308
             +E  K   D++++V+TEIPY +  A + + +    +LV  K++ D+ D+ ++S+++G 
Sbjct: 240 MEVELGKRKADKDKLVITEIPYTMIGAGINKFLMDVADLVESKKLTDVVDISNQSNKEGI 299

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+EL++ A  + I N LY+ T L+  F VNM+A+ G +PE  +L GILK F+ F+ + 
Sbjct: 300 RIVLELRKDADIEKIRNILYKKTKLEDTFGVNMLAIAGGRPETLSLRGILKNFLDFQYQN 359

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             ++ + LL K R+R  V  GL  A   +D ++ ++R S N + AR  L     +     
Sbjct: 360 TEKKYRVLLQKERERQEVQEGLIAACDCIDLIIAVLRGSKNLKDARACLTTGDVS----- 414

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              ++   +         ++ +E Q  AILE+RL +L GL    +  E      +I    
Sbjct: 415 ---NIKFKTPGFEADAKKLHFTERQASAILEMRLYKLIGLEILALEKEHKETLRKIARYE 471

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL SR+ +  +IK +L ++K E   PR+T+I +G   + DE  +  +++V  +   GY 
Sbjct: 472 KILGSRATMNQVIKDDLEAIKKEFALPRKTQIEDGPEAVYDETAVQVQEVVFVMDRFGYC 531

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  + Y   R             +     +        +L F+  G +++ K   +P 
Sbjct: 532 KLLDKATYERNRET----------VDTEQVHVVRCLNTDKILLFTDTGNLHQLKAMDVPA 581

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+   + G+     +    D        +VFAT+   V++    +F   
Sbjct: 582 GKLRDKGTPIDNLSKFDGGKETIVYLA---DSRELKGKVLVFATRTAMVKQVPAEEFET- 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           N     A KL   D ++SV     + +++L T  G  +RF +  I V   +N+ GVRGI 
Sbjct: 638 NNRTVAATKLQDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVMK-KNARGVRGIK 696

Query: 729 LAKGDQVISMAIVLHA 744
           LA+G+++ ++ ++   
Sbjct: 697 LARGEELEALYLLGED 712



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 59/171 (34%), Gaps = 6/171 (3%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            V+            D    +             D        +                
Sbjct: 552 HVVRCLNTDKILLFTDTGNLHQLKAMDVPAGKLRDKGTPIDNLSKFDGGKETIVYLADSR 611

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +LK + ++  +     K+  + +F  +NR          +K+ +  ALV+V PV    ++
Sbjct: 612 ELKGKVLVFATRTAMVKQVPAEEFETNNR------TVAATKLQDGDALVSVTPVEGQTEV 665

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +L +  G  +R  + EI +  +  +GV     A+ E + ++  + E  +VD
Sbjct: 666 VLRTSNGVFLRFMLEEISVMKKNARGVRGIKLARGEELEALYLLGEDPVVD 716



 Score = 39.0 bits (89), Expect = 4.2,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 64/194 (32%), Gaps = 9/194 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    + G  +    + + +   +           E + V  C   + ILL T  G   +
Sbjct: 522 VFVMDRFGYCKLLDKATYERNRETV--------DTEQVHVVRCLNTDKILLFTDTGNLHQ 573

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
                +     R+  G    +L+K D      + L    +   ++      +A  + +  
Sbjct: 574 LKAMDVPAGKLRD-KGTPIDNLSKFDGGKETIVYLADSRELKGKVLVFATRTAMVKQVPA 632

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  E  +    ++   +            +  ++  +  G   R    +  +  ++ +G+
Sbjct: 633 EEFETNNRTVAATKLQDGDALVSVTPVEGQTEVVLRTSNGVFLRFMLEEISVMKKNARGV 692

Query: 828 RATDVSKINEIGAL 841
           R   +++  E+ AL
Sbjct: 693 RGIKLARGEELEAL 706


>gi|291516760|emb|CBK70376.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum F8]
          Length = 908

 Score =  602 bits (1553), Expect = e-170,   Method: Composition-based stats.
 Identities = 261/940 (27%), Positives = 423/940 (45%), Gaps = 102/940 (10%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYA GRG++  R  +HIE  +  ++ IV+TE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYANGRGTLTTRAATHIEHVTARKQAIVITELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLI---------DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
             LM            I          +          D    + E+         L ++
Sbjct: 420 SRLMVVFDLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRIEELTRILASAEALDQV 479

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
                D+   +  S    +    D   + + ++          K  L+  +    +    
Sbjct: 480 VTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVAQGAGASGVSKSALEAVKAATTISSAE 539

Query: 526 DMEDEDCI-----------------VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
                                      E  VV +S  G + R   S   A        + 
Sbjct: 540 ADVAAAAAAAKKTGERSALTGALKIEDEPCVVMMSATGLIARTTPS---AMDVFNARSTS 596

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP-----------IGSPQARGKA 617
                +D +T +F  ST  +    +S G +    V  LP            G        
Sbjct: 597 DERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPASATLSLKGGVQADELIG 656

Query: 618 LINILSLNQGERITTIMPFPEDESSWNN---------------LYVVFATKHGNVRRNKL 662
           +       +GER+ T +   +  S   +                 +   T++G ++R   
Sbjct: 657 MTESTDPIRGERVITAIAMEQPTSGKASAEDESEDGAAEAKPLPPLAIGTRNGVIKRWNR 716

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                +       + L   DE++       ++ ++  +     + F    +R   GR + 
Sbjct: 717 EAPTTM--DSWPVIDLKDGDEVVFAAVAEDDDRLVFISSDSSLLTFEAKNVRP-QGRTAG 773

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G+ GI LA+G +V +  +V      +          S    ++     +  +L       
Sbjct: 774 GMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVLTVAGDSDALPG----- 828

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL- 841
                                +E G  K T    +    R+  G+R+    K      L 
Sbjct: 829 ---------------------TENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 867

Query: 842 -VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 868 WVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 898


>gi|259500635|ref|ZP_05743537.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
 gi|302191324|ref|ZP_07267578.1| DNA topoisomerase IV subunit A [Lactobacillus iners AB-1]
 gi|259168019|gb|EEW52514.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus iners DSM
           13335]
          Length = 831

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYTKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLTFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSDGVPVAL 812


>gi|312872926|ref|ZP_07732986.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|312874231|ref|ZP_07734265.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|329920252|ref|ZP_08277036.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
 gi|311090301|gb|EFQ48711.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091448|gb|EFQ49832.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2062A-h1]
 gi|328936297|gb|EGG32745.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN 1401G]
          Length = 831

 Score =  602 bits (1552), Expect = e-170,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLTFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSDGVPVAL 812


>gi|312875591|ref|ZP_07735592.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325912647|ref|ZP_08175030.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
 gi|311088845|gb|EFQ47288.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 2053A-b]
 gi|325478068|gb|EGC81197.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 60-B]
          Length = 831

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLTFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSDGVPVAL 812


>gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806]
 gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis]
          Length = 894

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 280/926 (30%), Positives = 472/926 (50%), Gaps = 82/926 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + +  I+     S+L Y+++VI  RA+PDL+DGLKPVHRRIL+   +  +  + ++
Sbjct: 18  PSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSRF 77

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G VMG YHPHG+ +IYDAL R++QD+ +R  L+EGQGNFGS+DGD PAA RYT
Sbjct: 78  KKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRYT 137

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K     L  + ++ VDF  NYDGS QEP +L    P++L+NG  GIAVGMAT IP
Sbjct: 138 EIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKIP 197

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV D  +A+IDNP++  +  +E I+GPDFPTG  I+G   +K  ++ G G I++R
Sbjct: 198 PHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEIIGIESVKRYHSKGLGKIILR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-----------DIADLR 300
                 +   ++ Q+++ EIP+ + KA +++KIA+L  E +              + ++R
Sbjct: 258 SKV---EIDANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQNIR 314

Query: 301 DESD-RQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           DES+ ++G R++IE K+G+       +LN LY+Y  LQ  F+VN+  L   KP+   +  
Sbjct: 315 DESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGKPQLLGIGA 374

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           I++ ++  + +++ R+TK+ L + + R H+L G    V NLDEV+RII    NPE   +E
Sbjct: 375 IIRNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVIIQE 434

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+ VQ + I +L L +L  +    + NE
Sbjct: 435 K-----------------------------YSLTPVQIKDIFDLPLRQLKKIEFLKLTNE 465

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-DTPRRTRIVEGLLDMEDE-DCIV 534
           L+    +  E   +L  +++    IK+EL+ +K+E  +  R+T I    +    + DCI 
Sbjct: 466 LDQKRAKRDEYQALLDDKNKQYENIKKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIP 525

Query: 535 REDMVVTVSHLGYVKRVPLSVYR-AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           +ED+++ V+   Y+  +PL       R      S    +  D   DL + S+H  +  F+
Sbjct: 526 KEDIILKVTQNNYIAAIPLDKIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFT 585

Query: 594 SLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMP-----FPEDESSWNN 645
           +   V+K K   + I        + + L N++ L   +     +         +E  W +
Sbjct: 586 NYARVFKLKAHEIKISANKKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKD 645

Query: 646 LYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           + ++FATK G +R+     F   +  +SGK AM+L   D++  V    ++++ILL +   
Sbjct: 646 IDLLFATKFGFIRKISFYKFFLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKN 705

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQR 762
           + +RF  S +     R + GVRGI+L   D ++    I   +  D D+ +  ++    + 
Sbjct: 706 KVIRFKSSILEAKRTRKTFGVRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGKI 765

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI--- 819
             +    +EI  +K          E+  ++ K  E   L              ++ I   
Sbjct: 766 TSLDSIKQEIVKVKEYDEETKQEVEKIIKQDKKDEDGEL--------------EYEIKLS 811

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATK 878
               GKG+ A    +  +   L+A   + D+DQI+L+++K  + R   ++I +   R T+
Sbjct: 812 KKWGGKGVLAYKNKENEK---LIACVLIKDSDQILLMTNKDHINRFQASQISVRKTRRTE 868

Query: 879 GVVIFSTAKDERVVSVERIRESEIVD 904
           G  + S   +E++V   + +  + ++
Sbjct: 869 GSQLISLKPNEKLVFFAKYQLPDDIE 894


>gi|113953878|ref|YP_729244.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
 gi|113881229|gb|ABI46187.1| DNA gyrase subunit A [Synechococcus sp. CC9311]
          Length = 820

 Score =  602 bits (1551), Expect = e-169,   Method: Composition-based stats.
 Identities = 286/820 (34%), Positives = 428/820 (52%), Gaps = 56/820 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + S+++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERVQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL + +H  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLARISHEGLLDEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++ NPD+  + ++++I GPDFPTG  +L  +G++  Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVQNPDLSENEVLKLIPGPDFPTGGEVLLGSGVRETYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHIEEVHPGKGKHRRNAVIVTELPYQLSKAGWIEKLAEHVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R TSLQS F   ++AL   +P++ TL  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPETVLTDLQRRTSLQSNFGAILLALVDGRPQQLTLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+A+L +V+ +I+ + +   AR  LM        
Sbjct: 363 LTIIRRTNHALRKTEDRLEVVEGLTTALASLQQVIAMIQEARDAAKARASLM-------- 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  A+L + L RLTGL ++ +R E + L  E + 
Sbjct: 415 ------------------VHFDLSERQADAVLAMPLRRLTGLEQESLRKEADDLRKERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM-------- 538
              +L +R +LL  + QEL  +K    TPRRTR+VEG   +  E    +           
Sbjct: 457 LTLLLENRDQLLDALIQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPNAELQRRQA 516

Query: 539 --------VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                    + +   G VK V   +    R        +       +  L  +     +L
Sbjct: 517 LDALPSDSRLLIQDDGQVKIVSPQL--LGRLHLNDPIPMGDEPSPALISL-PIQPPPRLL 573

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G V     W           + L   L  ++   +   +P PED  +     +  
Sbjct: 574 AVTVSGRVA-LVRWEFAGQQQGTLERFLPTALEGDEVVSLLP-LPNPEDLVANETKSLGL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G  +R  L D  +++      +KL     + +   C    D+ + + +G+ +R   
Sbjct: 632 LTSDGRFKRLPLKDIQELSGRAATVLKLKEGVSLKAALICQDGADVAVISDIGRVLRLQA 691

Query: 711 SAIR-VFAGRNSVGVRGISLAKGDQVISMAI--VLHADADYDERICYMKHMSAQRRLISG 767
                   G+ + G   + L  G+Q+++                            + S 
Sbjct: 692 EETNLPVMGKLAQGPITMRLLPGEQLVTAIAGHAERPTTILLASQTGRLQWLELTCIRSC 751

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
              ++  +  +   E     ER     L +  I  V+  G
Sbjct: 752 KRGDLGEIGWEFDSESTSGSERIAAACLADSLIGVVTSSG 791



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 68/173 (39%), Gaps = 16/173 (9%)

Query: 732 GDQ----VISMAIVLHA---DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           GD+    +IS+ I             R+  ++   A ++  + +    T+L+ D  V   
Sbjct: 554 GDEPSPALISLPIQPPPRLLAVTVSGRVALVRWEFAGQQQGTLERFLPTALEGDEVVSLL 613

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVA 843
                   +  + + +  ++  G  KR    D + +S R      A  V K+ E  +L A
Sbjct: 614 PLPNPEDLVANETKSLGLLTSDGRFKRLPLKDIQELSGR------AATVLKLKEGVSLKA 667

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSV 894
                D   + ++SD G ++R+   E  + +  +  +G +       E++V+ 
Sbjct: 668 ALICQDGADVAVISDIGRVLRLQAEETNLPVMGKLAQGPITMRLLPGEQLVTA 720


>gi|312871702|ref|ZP_07731790.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311092644|gb|EFQ51000.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 831

 Score =  601 bits (1550), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLIFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTISDGVPVAL 812


>gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
 gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a'
           Region) Of Staphylococcus Aureus Dna Gyrase Complexed
           With Gsk299423 And Dna
          Length = 726

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 260/518 (50%), Positives = 346/518 (66%), Gaps = 27/518 (5%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
            +   E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G
Sbjct: 233 NLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQG 292

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD 
Sbjct: 293 MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 352

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA R+TE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAV
Sbjct: 353 AAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 412

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TG
Sbjct: 413 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETG 472

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+ 
Sbjct: 473 RGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETS 532

Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++ 
Sbjct: 533 LRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE 592

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR   
Sbjct: 593 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR--- 649

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL++RL RLTGL RD I  E N L   
Sbjct: 650 -----------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNY 686

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           I E   IL+    LL +++ EL  ++D     RRT I 
Sbjct: 687 ISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ 724


>gi|108796988|ref|YP_637185.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119866072|ref|YP_936024.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
 gi|108767407|gb|ABG06129.1| DNA gyrase subunit A [Mycobacterium sp. MCS]
 gi|119692161|gb|ABL89234.1| DNA gyrase subunit A [Mycobacterium sp. KMS]
          Length = 1257

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 276/787 (35%), Positives = 429/787 (54%), Gaps = 92/787 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 611

Query: 191  PTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N     +  L A+ME ++GPDFPT  +I+G  GI++ Y TGRG
Sbjct: 612  PPHNLRELADAVYWCLENFEADEETTLAAVMERVKGPDFPTHGLIVGSQGIEDTYKTGRG 671

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            S+ +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR
Sbjct: 672  SVKMRGVVEIEEDSRGRTGIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 731

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 732  VGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVEHQ 791

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++      
Sbjct: 792  LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIE------ 845

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 846  --------------------LLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 885

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I++ EL  + D+    RRTRIV    ++ DED I RED+VVT++  
Sbjct: 886  DLEDILAKPERQRAIVRDELKEIADKYGDDRRTRIVPADGEVSDEDLIAREDVVVTITET 945

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 946  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYE 1005

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++++L+DF
Sbjct: 1006 LPEASRTARGQHVANLLAFQPNERIAQVIQIKSYE---DAPYLVLATRNGLVKKSRLTDF 1062

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1063 DSNRSGGIVAVNLRDGDELVGAVLCSSEDDLLLVSAKGQSIRFSATDEALRPM-GRATSG 1121

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1122 VQGMRFNADDELLSLNVVRP---------------------------------------- 1141

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRTS  ++    R GKGI      +    G LV 
Sbjct: 1142 -------------DTYLLVATSGGYAKRTSIEEYTAQGRGGKGILTIQYDRR--RGNLVG 1186

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+   
Sbjct: 1187 ALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDS 1246

Query: 904  DEAESTE 910
             +  +T+
Sbjct: 1247 TDEVNTD 1253



 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 90/130 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|225572726|ref|ZP_03781481.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039899|gb|EEG50145.1| hypothetical protein RUMHYD_00915 [Blautia hydrogenotrophica DSM
           10507]
          Length = 748

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 248/730 (33%), Positives = 394/730 (53%), Gaps = 27/730 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +E+   I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   QEKNDQIIRTDYAEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGQTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RLQK    + L DL K+ VDF PN+D + +EP VL  + PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLQKLTQEVYLADLDKNVVDFIPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+DG  A + N DI    LM  I+GPDFPTG +++ +  ++  Y TG G I
Sbjct: 182 SIPPHNLGEVIDGVKAYMKNNDITTKGLMRYIKGPDFPTGGIVVNQDELRKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDR 305
            +RG   IEK  G R  +V+TEIPY +  A + + + +   LV  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEIEKAKGGRLHLVITEIPYTMIGANIGKFLNDVATLVESKKTTDILDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+EL+R    D ++N LY+ T L+  F VNM+A+   +PE  +L  +++  V F+
Sbjct: 302 EGIRIVLELRRDTDVDNLVNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQVVEHHVEFQ 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+ + LL+K  ++  V  GL  AV  +D ++ I+R S N +  ++ L        
Sbjct: 362 FEIANRKYRTLLDKELEKKEVQEGLMKAVDVIDLIIEILRGSKNQQQVKKCLTTGETEG- 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                  +   S  +  +   +  +E Q  AILE+RL RL GL  + +  E  +    I 
Sbjct: 421 -------IRFKSKASQKAAAQLRFTERQATAILEMRLYRLIGLEMEALLKEHEATLEHIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +  D+L++   +   I  EL +VK E    RRT +      + +E  I   ++   +   
Sbjct: 474 KYEDLLNNYDSMAQAIMNELDAVKKEFGRKRRTALENAQEAVFEEKKIEEMEVWFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GYVK +    Y   +                   LF       +  F+  G ++  KV  
Sbjct: 534 GYVKTIDRQTYERNKENAC----------SESKYLFSCMNTDRICIFTDAGRMHAVKVLD 583

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+   + +G  + N+ + N  E     +   E+        ++FAT+   +++    +F
Sbjct: 584 IPLVKFRDKGVPVDNLSNYNSQEEQILYVAGMEELKHSQ---LLFATQKAMLKQVSGQEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             + +   +A KL   D+++ V        ++L +  G  +RF    +     + ++GVR
Sbjct: 641 -DVTKRTIMATKLTEGDKVIFVAPSDAMEYVVLQSTQGYFLRFLKQEVPEKK-KGAIGVR 698

Query: 726 GISLAKGDQV 735
           G+ L + DQ+
Sbjct: 699 GMRLGEQDQL 708



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 6/98 (6%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +LK   +L  ++K   K+ S  +F ++ R+   I AT +++ ++   ++ V P +  + +
Sbjct: 617 ELKHSQLLFATQKAMLKQVSGQEFDVTKRT---IMATKLTEGDK---VIFVAPSDAMEYV 670

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L S +G  +R    E+    +   GV      + +++
Sbjct: 671 VLQSTQGYFLRFLKQEVPEKKKGAIGVRGMRLGEQDQL 708



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/188 (11%), Positives = 59/188 (31%), Gaps = 9/188 (4%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
               + G V+      + +   +           E   + +C   + I + T  G+    
Sbjct: 528 FLMDRFGYVKTIDRQTYERNKENAC--------SESKYLFSCMNTDRICIFTDAGRMHAV 579

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +  I +   R+  GV   +L+  +      + +    +            A  + +SG 
Sbjct: 580 KVLDIPLVKFRD-KGVPVDNLSNYNSQEEQILYVAGMEELKHSQLLFATQKAMLKQVSGQ 638

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             ++T     ++      +          ++++  S +G+  R    +     +   G+R
Sbjct: 639 EFDVTKRTIMATKLTEGDKVIFVAPSDAMEYVVLQSTQGYFLRFLKQEVPEKKKGAIGVR 698

Query: 829 ATDVSKIN 836
              + + +
Sbjct: 699 GMRLGEQD 706


>gi|50365126|ref|YP_053551.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
 gi|50363682|gb|AAT75667.1| DNA topoisomerase IV subunit A [Mesoplasma florum L1]
          Length = 908

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 258/804 (32%), Positives = 419/804 (52%), Gaps = 43/804 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I +S+ E EKGI S ++ D M   +  YA  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MAKKIDNSNIESEKGIISYALEDLMGERFGRYAKYIIQERALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ + ++K Y K AR+ GEV+GKYHPHG+ +IYDA+ RM+Q W L + LI+ QGN GS+
Sbjct: 61  NELNLTYDKPYKKSARVVGEVIGKYHPHGDTSIYDAMVRMSQWWKLGMPLIDMQGNNGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K +  +LDDL K+TV F PN+D S +EP VL + +PN+LVNG  
Sbjct: 121 DGDNAAAMRYTETRLAKISDLMLDDLNKNTVKFAPNFDDSEKEPTVLPSYFPNILVNGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G ATN+P HNLGE++D  + +I  P+  +D ++EI++GPDFPTG  + GR GIK+A
Sbjct: 181 GIAAGYATNMPPHNLGEIIDATIKLIRTPNTRIDTILEIVKGPDFPTGGTVQGRNGIKDA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           + TG+G +++    H E  +     I++ EIPY+V K  +++KI +++     + I ++R
Sbjct: 241 FTTGKGKVIVNSKWHEEDNN-----IIIDEIPYEVVKQDLVKKIGDVIDANPGLGILEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DE+DR G R+ I+L   A+ D +   L++ T L   ++ N VA+   +P++  +I ++ A
Sbjct: 296 DETDRNGLRIAIDLSDKANLDTVRKFLFKSTPLSISYNYNNVAIVDLQPKQLGIIELIHA 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A  +EV   RT++ LNKA  R  +++GL  A++ LD+V+ +IR S N   A   L+ +
Sbjct: 356 YIAHYKEVFTFRTQFDLNKAEKRLEIILGLIKAMSILDQVISVIRSSTNRSDAIENLISK 415

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                        S+ Q  AI+++RL RLT      ++NE   L
Sbjct: 416 --------------------------FVFSQPQAAAIVDMRLYRLTSTDVVKLQNEKEEL 449

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDM 538
            + I +   IL+S   +   I   L  VK +  TPRR+ + + + +++ E  + +V  + 
Sbjct: 450 DVNIAKLKAILNSEEVMDNEIINRLREVKKQFPTPRRSIVEDSIENLDVEQKEVLVEHEY 509

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY     L    ++       +    +  D       VS    ++  ++ G  
Sbjct: 510 NLWISKDGY-----LKAIESKLISKNDPAVFGRKPNDMWIAAGEVSNLQHLILVTNKGTY 564

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y   +++LP+   +  G  +  I +++  E I +     +   +     ++  +K+GN++
Sbjct: 565 YSIPLYKLPMSKWRDMGVHVNTIATMDPSEHIVSAFVVKDFAEALQ--QILITSKNGNIK 622

Query: 659 RNKLSDF-IQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRFPISAIRVF 716
           R  + D   +I       MKLD+ DEI+S    T +     + T+ G  VR+ I  I   
Sbjct: 623 RIPVKDLETKIFTRAFRIMKLDAVDEIVSASLITSKTRTCGIITRNGYGVRYHIEDI-PV 681

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G NS GV+  +L +   V  + +       Y      +K    +   I    +    + 
Sbjct: 682 QGTNSKGVKAANLKEDYIVAGLGLTSEDTIMYLTEKDGVKKFRNEDLPIYIRPKRGIRVL 741

Query: 777 NDSSVEGNISEERCQELKLKEQFI 800
            +                 +E  I
Sbjct: 742 PERKRGTEYITFAFNFNANEENII 765



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 94/259 (36%), Gaps = 12/259 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E     +   + E    + Y ++ +K G ++  +     +   +          D  ++ 
Sbjct: 490 EDSIENLDVEQKEVLVEHEYNLWISKDGYLKAIESKLISK---NDPAVFGRKPNDMWIAA 546

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHA 744
              +    ++L T  G     P+  +   +    +GV      ++   + ++S  +V   
Sbjct: 547 GEVSNLQHLILVTNKGTYYSIPLYKL-PMSKWRDMGVHVNTIATMDPSEHIVSAFVVKDF 605

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTV 803
                + +   K+ + +R  +     +I +          + E     L   K +    +
Sbjct: 606 AEALQQILITSKNGNIKRIPVKDLETKIFTRAFRIMKLDAVDEIVSASLITSKTRTCGII 665

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +  G+G R    D  +   + KG++A ++ +      +VA   +   D I+ +++K  + 
Sbjct: 666 TRNGYGVRYHIEDIPVQGTNSKGVKAANLKE----DYIVAGLGLTSEDTIMYLTEKDGVK 721

Query: 864 RVPVNEIRIASRATKGVVI 882
           +    ++ I  R  +G+ +
Sbjct: 722 KFRNEDLPIYIRPKRGIRV 740



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI--RATDVSKIN 836
              E  +S    ++     Q IL  S+ G  KR    D          I  RA  + K++
Sbjct: 591 DPSEHIVSAFVVKDFAEALQQILITSKNGNIKRIPVKDLETK------IFTRAFRIMKLD 644

Query: 837 EIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +  +V+   +        +++  G  +R  + +I +    +KGV   +  +D  V  + 
Sbjct: 645 AVDEIVSASLITSKTRTCGIITRNGYGVRYHIEDIPVQGTNSKGVKAANLKEDYIVAGLG 704

Query: 896 RIRES 900
              E 
Sbjct: 705 LTSED 709


>gi|325912052|ref|ZP_08174450.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
 gi|325476002|gb|EGC79170.1| DNA topoisomerase IV, A subunit [Lactobacillus iners UPII 143-D]
          Length = 831

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLTFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTISDGVPVAL 812


>gi|309805614|ref|ZP_07699656.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308165052|gb|EFO67293.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           09V1-c]
          Length = 831

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDVLIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALKILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLTFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTTSDGVPVAL 812


>gi|42519097|ref|NP_965027.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
 gi|41583384|gb|AAS08993.1| topoisomerase IV subunit A [Lactobacillus johnsonii NCC 533]
          Length = 826

 Score =  601 bits (1549), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/895 (31%), Positives = 445/895 (49%), Gaps = 93/895 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YDFTPNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D V     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLP-----AGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + +    NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLK---ANLNFLIATNDGYIKQVTLADLQP 627

Query: 668 INR---SGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     A+KL S D     +       + +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITAIKLKSNDSKVVRIDQVQPDSKQEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIK------------------------------- 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++++G  K+          R+ +G+      K      +
Sbjct: 716 ------------------IGIITQRGAFKQLKLSLINKVTRAKRGVLVLRELKTKPH-RI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +A+    +N  + L +     I +  +E  +  R + G  +     D   VS+  
Sbjct: 757 MAISSYGENHILHLNTSSDRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPVSLTL 811


>gi|77409786|ref|ZP_00786437.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
 gi|77171606|gb|EAO74824.1| DNA gyrase, A subunit, truncation [Streptococcus agalactiae COH1]
          Length = 733

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 309/758 (40%), Positives = 461/758 (60%), Gaps = 37/758 (4%)

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ N
Sbjct: 1   MVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDN 60

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EP+VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    L
Sbjct: 61  YDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTREL 120

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPTGA+++GR+GI  AY TG+GSIV+R  + IE TS  +E+IVVTE PY VN
Sbjct: 121 MEVIPGPDFPTGALVMGRSGIHRAYETGKGSIVLRSRTEIETTSNGKERIVVTEFPYGVN 180

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K  + E I  L +EKRI  I  +RDES R+G R VIE++R ASA+VILN L++ TSLQ+ 
Sbjct: 181 KTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFVIEVRRDASANVILNNLFKLTSLQTN 240

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           FS NM+A+    P+  +L  I+  ++  ++EV+VRRT++   KA  RAH+L GL +A+ +
Sbjct: 241 FSFNMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHILEGLLVALDH 300

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           LDEV+ IIR S     A+ ELM R                            LSE Q++A
Sbjct: 301 LDEVITIIRNSETDTIAQAELMSR--------------------------FELSERQSQA 334

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           IL++RL RLTGL RD I++E N L   I +  DIL+   R++ IIK+E+  VK +    R
Sbjct: 335 ILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADAR 394

Query: 517 RTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RT ++ G +   +++ ++ E+ V +T+S+ GY+KR+    +RAQ+RGG+G  G  + ++D
Sbjct: 395 RTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDD 454

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
           FV +L   STH +VLFF++LG VY+ K + +P     A+G  ++N+L L++GE I TI+ 
Sbjct: 455 FVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIIN 514

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
             +++    N Y  F T+ G V+R  +S+F  I ++G  A+ L   DE+++V    +  D
Sbjct: 515 ARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELINVLLIDENED 572

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA-IVLHADADYDERICY 754
           +++ T+ G  VRF ++A+R   GR + GVRG++L +GD+V+  + IV   +        Y
Sbjct: 573 VIIGTRTGYSVRFKVNAVRNM-GRTATGVRGVNLREGDKVVGASRIVNGQEVLIITEKGY 631

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
            K   A      G   +     N ++  G ++           + I+ +++ G   RT+ 
Sbjct: 632 GKRTEASEYPTKGRGGKGIKTANITAKNGPLAR---LVTINGNEDIMVITDTGVIIRTNV 688

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
            +   + RS  G++   +   ++   +V V  V    +
Sbjct: 689 ANISQTGRSTMGVKVMRL---DQEAKIVTVALVEQEIE 723



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 122/294 (41%), Gaps = 28/294 (9%)

Query: 620 NILSLNQGE-RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           N+L++ +G  +I ++    ++        +V  T+    +    +  +       + + L
Sbjct: 244 NMLAIEKGVPKILSLRQIIDNYIEHQKEVIVRRTQFDKAKAEARAHIL-----EGLLVAL 298

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-----KGD 733
           D  DE++++   ++ + I    +     RF +S       R S  +  + L      + D
Sbjct: 299 DHLDEVITIIRNSETDTI---AQAELMSRFELSE------RQSQAILDMRLRRLTGLERD 349

Query: 734 QVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           ++ S    ++       D      + ++  +  +     +    +    + G +     +
Sbjct: 350 KIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKRKYADARRTELMIGEVLSLEDE 409

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++T+S KG+ KR +  +FR   R G+GI+ T V+  + +  LV+    + +D
Sbjct: 410 DLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQGTGVNNDDFVRELVST---STHD 466

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            ++  ++ G + R+   EI    R  KG   V +    + E + ++   R+ ++
Sbjct: 467 TVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDV 520


>gi|260435822|ref|ZP_05789792.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
 gi|260413696|gb|EEX06992.1| DNA gyrase subunit A [Synechococcus sp. WH 8109]
          Length = 822

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 269/752 (35%), Positives = 412/752 (54%), Gaps = 52/752 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVEPIALHREMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  +L+++G+DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+G +A+I  P++  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVEGLIALIRKPELSDEKLLELIPGPDFPTGGEVLISSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ FRE
Sbjct: 303 GMRVVVELRRDADPENVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQTFLDFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLISALNNLQAVIAMIQEANDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL+ L  E + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELDELRAERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL ++K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLDNRDQLLDAMVTELKALKKRFSTPRRTRLVEGGDALMAERAASQRPNTELLRQQA 516

Query: 547 YV-----KRVPLSVYRAQRRGGKGRSGVVMRDED--------FVTDLFIVSTHTSVLFFS 593
                   RV +      +       G +  ++             +  +     +L  S
Sbjct: 517 LAALPGDGRVLIQADGQVKIVTPQVLGRLHLNDPCPIGDAPSPARVILPIEPPPRLLAVS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G + + +           +   +   L           +       + +NL +   + 
Sbjct: 577 ARGRIAQVRWE-----FAGQQPGPIDRFLPTGLDGDPIVSL-LSLPSQNIDNLSLGLLSS 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  LS+ + ++      +KL    E+ S   C  +  + L + +G+ +R  ++  
Sbjct: 631 DGRFKRLPLSEIVDLSGRATSVLKLKEGVELNSAVICRDQGTLALISDIGRLLRLRVTED 690

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
                GR + G   + L  G+ ++        
Sbjct: 691 SLPLMGRLAQGPMTMRLLPGEHIVGAVCTEQT 722



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 804 SEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR    +   +S R+        V K+ E   L +     D   + L+SD G L
Sbjct: 629 SSDGRFKRLPLSEIVDLSGRATS------VLKLKEGVELNSAVICRDQGTLALISDIGRL 682

Query: 863 IRVPV--NEIRIASRATKGVVIFSTAKDERVVSVE 895
           +R+ V  + + +  R  +G +       E +V   
Sbjct: 683 LRLRVTEDSLPLMGRLAQGPMTMRLLPGEHIVGAV 717



 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 58/168 (34%), Gaps = 8/168 (4%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD ++S+  +   + D    +  +      +RL   +  +++             E   
Sbjct: 605 DGDPIVSLLSLPSQNIDNL-SLGLLSSDGRFKRLPLSEIVDLSGRATSVLKLKEGVELNS 663

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             +   +  +  +S+ G   R    +    +  R  +G     +        +V      
Sbjct: 664 AVICRDQGTLALISDIGRLLRLRVTEDSLPLMGRLAQGPMTMRLLPGE---HIVGA-VCT 719

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVE 895
           +   ++L++ +G + R+  + +R   R   G +      + +R+V + 
Sbjct: 720 EQTPLMLITRQGMIGRIDYSGLRYNQRGDLGSMALQIDAESDRLVGIS 767


>gi|154506274|ref|ZP_02043012.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
 gi|153793413|gb|EDN75833.1| hypothetical protein RUMGNA_03816 [Ruminococcus gnavus ATCC 29149]
          Length = 747

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 259/729 (35%), Positives = 397/729 (54%), Gaps = 27/729 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E  I     +D M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K 
Sbjct: 2   SSESQIIRTEYSDVMRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IY++L  MAQ++   ++L++G GNFGS++GD  AA RY
Sbjct: 62  YRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRY 121

Query: 131 TECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RL K      L DL KD +DF PN+D + +EP+VL  R PN+L+NG  GIAVGMAT+
Sbjct: 122 TEARLTKFTQEAYLADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTHNLGEV+D   A + N  I    LM+ I+GPDFPTG +++ +  +   Y TG+G I 
Sbjct: 182 IPTHNLGEVIDAVKAYMKNDAITTKQLMKYIKGPDFPTGGIVVNKDDLPEIYETGQGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQ 306
           IRG   +E   G ++Q+V+TEIPY +  A + + +     LV  K+  DI D+ ++S ++
Sbjct: 242 IRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I++  V F+ 
Sbjct: 302 GIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKAIIEHHVDFQF 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E+  R+ K LL K  D+  V  GL  A   +D ++ I+R S + + A+  L Q       
Sbjct: 362 ELTTRKYKTLLAKELDKKEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQGITENIK 421

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K  I               +  +E Q  AILE+RL +L GL  + ++ E  +    I  
Sbjct: 422 FKSQISK--------KMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIAR 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL+    +  +I +EL + K E    RRT I      + +E  +  ++++  +   G
Sbjct: 474 YEDILNHYDSMATLIMEELDAFKKEYGRKRRTAIENAEAAVFEEKKVEEQEVIFLMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K V +SVY   +             +     +        +  F+  G +++ KV  L
Sbjct: 534 YAKTVDVSVYERNKEAA----------DSENKYVVNCLNTGKICLFTDTGKMHQIKVMDL 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N+ + +  E     +    D        ++FATK G ++R   S+F 
Sbjct: 584 PYGRFRDKGVPIDNVSNYSSSEEQIVTIC---DAQQIAFEKLLFATKQGMIKRVDGSEFQ 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   A KL   D ++ V    +  +I+L T+ G  +RF  + I     + +VGVRG
Sbjct: 641 VAK-RTIAATKLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLTAEIPEKK-KGAVGVRG 698

Query: 727 ISLAKGDQV 735
           I L K D++
Sbjct: 699 IKLQKTDEL 707



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   V++           D    +   +         D        ++ S         
Sbjct: 552 SENKYVVNCLNTGKICLFTDTGKMHQIKVMDLPYGRFRDKGVPIDNVSNYSSSEEQIVTI 611

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
           C   ++  + +L  +++G  KR    +F+++ R          +K+ E  AL+ V  V +
Sbjct: 612 CDAQQIAFEKLLFATKQGMIKRVDGSEFQVAKR------TIAATKLQEEDALIHVGMVQE 665

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           N  I+L +  G  +R    EI    +   GV      K + +
Sbjct: 666 NQNIVLQTRDGYFLRFLTAEIPEKKKGAVGVRGIKLQKTDEL 707



 Score = 37.8 bits (86), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 60/207 (28%), Gaps = 9/207 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       +    + G  +   +S + +   +           E   V  C    
Sbjct: 513 AVFEEKKVEEQEVIFLMDRFGYAKTVDVSVYERNKEAA--------DSENKYVVNCLNTG 564

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I L T  G+  +  +  +     R+  GV   +++         + +            
Sbjct: 565 KICLFTDTGKMHQIKVMDLPYGRFRD-KGVPIDNVSNYSSSEEQIVTICDAQQIAFEKLL 623

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                   + + G   ++      ++            +  + Q I+  +  G+  R  +
Sbjct: 624 FATKQGMIKRVDGSEFQVAKRTIAATKLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLT 683

Query: 815 YDFRISNRSGKGIRATDVSKINEIGAL 841
            +     +   G+R   + K +E+  +
Sbjct: 684 AEIPEKKKGAVGVRGIKLQKTDELEQI 710


>gi|331090928|ref|ZP_08339770.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405150|gb|EGG84686.1| hypothetical protein HMPREF9477_00413 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 746

 Score =  601 bits (1548), Expect = e-169,   Method: Composition-based stats.
 Identities = 246/728 (33%), Positives = 398/728 (54%), Gaps = 27/728 (3%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  +     ++ M+ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G++++K Y
Sbjct: 2   QDSQLIRTEYSEVMKKSYIDYAMSVIVSRALPDVRDGLKPVQRRTLYDMYELGIKYDKPY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI G+ MGKYHPHG+++IY++L  MAQD+   + L++G GNFGS++GD  AA RYT
Sbjct: 62  RKSARIVGDTMGKYHPHGDSSIYESLVVMAQDFKKGMALVDGHGNFGSIEGDGAAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL +      L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT+I
Sbjct: 122 EARLARLTQEAYLSDLDKDIVDFVPNFDETEKEPEVLPVRVPNLLVNGAEGIAVGMATSI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNLGEVVD   A + N  I    LM+ ++GPDFPTGA+++ +  + + Y TG G I +
Sbjct: 182 PTHNLGEVVDAVKAYMKNNGITTKQLMKYVKGPDFPTGAIVVNKDDLLSVYETGSGKIKL 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
           RG   +E+  G ++++V++EIPY +  A + + + +   LV  K+  DI D+ ++S ++G
Sbjct: 242 RGKVEVEEGKGGKKKLVISEIPYTMIGAGIGKFLNDVASLVETKKTNDITDISNQSSKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+    + + N LY+ T L+  F VNM+A+   KPE   L  I++  V F+ E
Sbjct: 302 IRIVLELKKDTDVENLKNMLYKKTRLEDTFGVNMLAVADGKPETMGLKKIIEHHVDFQFE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+ K LL K  D+  +  GL  A   +D ++ I+R S + +  +  L     +    
Sbjct: 362 LATRKYKNLLGKELDKKEIQEGLIKACDVIDLIIEILRGSKSIKDVKACLTNGVTDNISF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K  I               +  +E Q  AILE+RL +L GL  + ++ E       I   
Sbjct: 422 KSNISK--------KMASMLRFTERQATAILEMRLYKLIGLEIEALQKEHEETLKNIARY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL++   +  +I +EL   K      RRT I      + +E  +  +D+VV +   GY
Sbjct: 474 EDILNNYDSMAEVIMEELDYYKKTYGRKRRTVIENAEEAVYEEKKVEEQDVVVLMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + +  + Y   +             +     +        +  F++ G +++ KV  +P
Sbjct: 534 TRSIDTATYDRNKESA----------DSENKHIIFCKNTGKICMFTNTGKMHQVKVLDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  E     +    DE  +    ++FATK+G +++   ++F+ 
Sbjct: 584 FGKFRDKGTPVDNLSNYDSAEENIIYIC---DEEQFRMGKMLFATKYGMIKKVDGAEFVV 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                  A KL   DE++S++   +  +I+L T  G  +RF    +     + ++GVRGI
Sbjct: 641 SK-RTITATKLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEVAEKK-KGAIGVRGI 698

Query: 728 SLAKGDQV 735
            L K D +
Sbjct: 699 KLQKTDIL 706



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 10/133 (7%)

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQF----ILTVSEKGFGKRTSSYDFRISNRSGKG 826
                  D+    + +EE    +  +EQF    +L  ++ G  K+    +F +S R    
Sbjct: 588 RDKGTPVDNLSNYDSAEENIIYICDEEQFRMGKMLFATKYGMIKKVDGAEFVVSKR---- 643

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 +K+ E   +V++ PVN+N  I+L +  G  +R    E+    +   GV      
Sbjct: 644 --TITATKLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLAEEVAEKKKGAIGVRGIKLQ 701

Query: 887 KDERVVSVERIRE 899
           K + + +V    E
Sbjct: 702 KTDILENVYLFEE 714



 Score = 39.4 bits (90), Expect = 2.7,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 62/207 (29%), Gaps = 9/207 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++       VV   + G  R    + + +   S           E   +  C    
Sbjct: 512 AVYEEKKVEEQDVVVLMDRFGYTRSIDTATYDRNKESA--------DSENKHIIFCKNTG 563

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  G+  +  +  I     R+  G    +L+  D      I +  +  +      
Sbjct: 564 KICMFTNTGKMHQVKVLDIPFGKFRD-KGTPVDNLSNYDSAEENIIYICDEEQFRMGKML 622

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                   + + G    ++     ++      E    +   + Q I+  +  G+  R  +
Sbjct: 623 FATKYGMIKKVDGAEFVVSKRTITATKLQEEDEVVSIQPVNENQNIVLQTGGGYFLRFLA 682

Query: 815 YDFRISNRSGKGIRATDVSKINEIGAL 841
            +     +   G+R   + K + +  +
Sbjct: 683 EEVAEKKKGAIGVRGIKLQKTDILENV 709


>gi|309804012|ref|ZP_07698094.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|309809853|ref|ZP_07703703.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163931|gb|EFO66196.1| DNA topoisomerase IV, A subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308169805|gb|EFO71848.1| DNA topoisomerase IV, A subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 831

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/899 (31%), Positives = 443/899 (49%), Gaps = 100/899 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEDNILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
           LDI+++++RL  +I +E   VK E  + RRT+I      ++++++  +  ED+ V VS  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKEFGSARRTQIVEQYKKIEIDEKALLSEEDVRVLVSAN 515

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR  L  Y++      G         D V     VST +++  F++ G +    V+ 
Sbjct: 516 GYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYIFTNKGNLIYRPVYE 570

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           L     +  G+ L   + L   ERI   +   +  +  ++L  +  T  G +++  LSD 
Sbjct: 571 LVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLIFLITTNDGYIKQVALSDL 627

Query: 666 IQINRSGKIA---MKLDSRDEILSVE---TCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                    A   +KL      + +        +N+ILL T     +RF ++ +    G 
Sbjct: 628 QPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYALRFDVNEV-PLVGP 686

Query: 720 NSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            + GV+ I+L    D V+S         +  +                            
Sbjct: 687 RAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG-------------------------- 720

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISNRSGKGIRATDVSKI 835
                                   V+++G  K+        F  + R    +R       
Sbjct: 721 -----------------------IVTQRGAFKQLQVDLVNKFTRAKRGSMILRELKTKPH 757

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                +VA      N  I + +     I++  N+  +  R + G  +  T  D   V++
Sbjct: 758 ----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSFVVDTISDGVPVAL 812


>gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois]
 gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois]
          Length = 894

 Score =  600 bits (1547), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/926 (30%), Positives = 472/926 (50%), Gaps = 82/926 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               + +  I+     S+L Y+++VI  RA+PDL+DGLKPVHRRIL+   +  +  + ++
Sbjct: 18  PSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSRF 77

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A + G VMG YHPHG+ +IYDAL R++QD+ +R  L+EGQGNFGS+DGD PAA RYT
Sbjct: 78  KKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRYT 137

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K     L  + ++ VDF  NYDGS QEP +L    P++L+NG  GIAVGMAT IP
Sbjct: 138 EIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKIP 197

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV D  +A+IDNP++  +  +E I+GPDFPTG  I+G   +K  ++ G G I++R
Sbjct: 198 PHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEIIGIESVKRYHSKGLGKIILR 257

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-----------DIADLR 300
                 +   ++ Q+++ EIP+ + KA +++KIA+L  E +              + ++R
Sbjct: 258 SKV---EIDANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQRFLQNIR 314

Query: 301 DESD-RQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           DES+ ++G R++IE K+G+       +LN LY+Y  LQ  F+VN+  L   KP+   +  
Sbjct: 315 DESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGKPQLLGIGA 374

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           I++ ++  + +++ R+T++ L + + R H+L G    V NLDEV+RII    NPE   +E
Sbjct: 375 IIRNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVIIQE 434

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+ VQ + I +L L +L  +    + NE
Sbjct: 435 K-----------------------------YSLTPVQIKDIFDLPLRQLKKIEFLKLTNE 465

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL-DTPRRTRIVEGLLDMEDE-DCIV 534
           L+    +  E   +L  +++    IK+EL+ +K+E  +  R+T I    +    + DCI 
Sbjct: 466 LDQKRAKRDEYQALLDDKNKQYENIKKELIEIKNEFKNDLRKTLITPKGIAKITKWDCIP 525

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFS 593
           +ED+++ V+   Y+  +PL       R   G +     +  D   DL + S+H  +  F+
Sbjct: 526 KEDIILKVTQNNYIAAIPLDKIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFT 585

Query: 594 SLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMP-----FPEDESSWNN 645
           +   V+K K   + I        + + L N++ L   +     +         +E  W +
Sbjct: 586 NYARVFKLKAHEIKISANKKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKD 645

Query: 646 LYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           + ++FATK G +R+     F   +  +SGK AM+L   D++  V    ++++ILL +   
Sbjct: 646 IDLLFATKFGFIRKISFYKFFLEKKWKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKN 705

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQR 762
           + +RF  S +     R + GVRGI+L   D ++    I   +  D D+ +  ++    + 
Sbjct: 706 KVIRFKSSILEAKRTRKTFGVRGINLRNDDGKIEGELISASSTYDGDQLLSLVESGKGKI 765

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI--- 819
             +    +EI  +K          E+  ++ K  E   L              ++ I   
Sbjct: 766 TSLDSIKQEIVKVKEYDEETKQEVEKIIKQDKKDEDGEL--------------EYEIKLS 811

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATK 878
               GKG+ A    +  +   L+A   + D+DQI+L+++   + R   ++I +   R T+
Sbjct: 812 KKWGGKGVLAYKNKENEK---LIACVLIKDSDQILLMTNTDHINRFQASQISVRKTRRTE 868

Query: 879 GVVIFSTAKDERVVSVERIRESEIVD 904
           G  + S   +E++V   + +  + ++
Sbjct: 869 GSQLISLKPNEKLVFFAKYQLPDDIE 894


>gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703]
          Length = 481

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 253/467 (54%), Positives = 331/467 (70%), Gaps = 9/467 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  IL AFV  R EVV RRT
Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQVTFGINMVALSQGQPKLLNLKDILVAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +  P  A+  L+   W   ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
               +             DG  YL+E Q +AIL+LRL +LTGL  ++
Sbjct: 427 AGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEN 473


>gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex
           With Gsk299423 And Dna
 gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
 gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex
           With Ciprofloxacin And Dna
          Length = 692

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 260/518 (50%), Positives = 346/518 (66%), Gaps = 27/518 (5%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
            +   E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G
Sbjct: 199 NLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQG 258

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD 
Sbjct: 259 MTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG 318

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA R+TE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+L NG  GIAV
Sbjct: 319 AAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAV 378

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNL E+++G +++  NPDI +  LME I GPDFPT  +ILG++GI+ AY TG
Sbjct: 379 GMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETG 438

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+  G R++IVVTEIP+QVNKA M+EKIAELVR+K+I  I DLRDE+ 
Sbjct: 439 RGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETS 498

Query: 305 -RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            R G RVVI++++ A+A VILN LY+ T LQ+ F VNM+AL   +P+   L   L  ++ 
Sbjct: 499 LRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLE 558

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++ VV RRT+Y L KA+DRAH+L GL IA+ ++DE++  IR S   + A   L QR   
Sbjct: 559 HQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQR--- 615

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q +AIL++RL RLTGL RD I  E N L   
Sbjct: 616 -----------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNY 652

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           I E   IL+    LL +++ EL  ++D     RRT I 
Sbjct: 653 ISELETILADEEVLLQLVRDELTEIRDRFGDDRRTEIQ 690


>gi|283768326|ref|ZP_06341238.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
 gi|283104718|gb|EFC06090.1| DNA topoisomerase IV, A subunit [Bulleidia extructa W1219]
          Length = 830

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 264/792 (33%), Positives = 414/792 (52%), Gaps = 40/792 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +     +  + D M   +  YA  +I  RA+PD+RDGLKPV RRIL+ M   G   +K Y
Sbjct: 9   DHTRYLNQRLEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPY 68

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G V+G YHPHG++++YDA+ RM+QDW +R+  I+  GN GS+D DP AA RYT
Sbjct: 69  RKSAKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPAAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    + +DL KDTV+  PN+D +  EP VL   +P +LVNG  GIA G ATN+P
Sbjct: 129 EARLAKVTQVMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV+D  +  I N +  L+ +M+I+ GPDFPTG ++ G  GI+ A+ TG+G IV+R
Sbjct: 189 PHNINEVIDATIYRIQNAECSLNDVMDILPGPDFPTGGIVQGEEGIREAFTTGKGRIVVR 248

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I +   + +QIV+TEIPY+V K  +++K+ E+   + +  + D+RDESDR G R+V
Sbjct: 249 AKTEIIQEK-NLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIV 307

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++++   A++IL   ++ T LQ  ++ N VA+   +P +  L+G+L AF+ FR+EVV+R
Sbjct: 308 IDVRKDVDANLILQYFFKNTDLQVYYNYNNVAIMRERPVQVGLLGLLDAFIDFRKEVVLR 367

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ LNK   R H++ GL  AV+ LDEV+ IIR S +   A+  L++            
Sbjct: 368 RSRFELNKMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIE------------ 415

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                              EVQ  AI+ LRL RL+      +RNE   L  +I+E   IL
Sbjct: 416 --------------NFGFDEVQAEAIVTLRLYRLSNTDIVSLRNEFAQLVNQIEETKSIL 461

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            + S L  ++ QEL  VK+     RRT+I   +   ++  E  I  E +++TVS  GY+K
Sbjct: 462 ENESVLRHLMVQELRQVKENYGDARRTKIEAKIDEINISKEAMIPSEQVMITVSKDGYLK 521

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           RV L  + A R          ++  D +     V+T  ++L F+S G      VW++   
Sbjct: 522 RVSLRSFNAVRD-----QETGLKTGDQLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDE 576

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G  L  ++ ++  E++ + +     +S     ++   TK   +++ KLSD+    
Sbjct: 577 KWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSY---AWITLVTKGNKIKKTKLSDWKVER 633

Query: 670 RSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            S    A+ L+ +DE+ +     Q  ++L+ TK G  +R     I       S GV+ + 
Sbjct: 634 TSRLFKAINLEEKDEVCAAFMTYQSQEVLVVTKDGYALRMSQDQIPEVK--ASKGVQAMK 691

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +A  D+V     V  +D                  L      +    +     + N S  
Sbjct: 692 VAFEDEVAFATSVYSSDNLLFLTDTLQAKRIHLEDLRLSGRAKNMGERICKKNKSNPSRL 751

Query: 789 RCQELKLKEQFI 800
           +        Q +
Sbjct: 752 QYVLAVKTGQNL 763



 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 99/257 (38%), Gaps = 11/257 (4%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  +K G ++R  L  F  +         L + D+++        
Sbjct: 497 INISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQET---GLKTGDQLIGQREVNTL 553

Query: 694 NDILLTTKLGQCVRFPISAI--RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           + +LL T  G     P+  I    +    S   + + +   ++VIS  +V + D+     
Sbjct: 554 DTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWIT 613

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +    +   + +L     E  + L    ++E    E     +  + Q +L V++ G+  R
Sbjct: 614 LVTKGNKIKKTKLSDWKVERTSRLFKAINLE-EKDEVCAAFMTYQSQEVLVVTKDGYALR 672

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            S         + KG++A  V+       +     V  +D ++ ++D     R+ + ++R
Sbjct: 673 MSQDQIPEVK-ASKGVQAMKVAF---EDEVAFATSVYSSDNLLFLTDTLQAKRIHLEDLR 728

Query: 872 IASRA-TKGVVIFSTAK 887
           ++ RA   G  I    K
Sbjct: 729 LSGRAKNMGERICKKNK 745



 Score = 44.4 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 62/187 (33%), Gaps = 20/187 (10%)

Query: 725 RGISLAKGDQVI-----SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           R   L+  D V      +  +    +         +      + L         + +   
Sbjct: 431 RLYRLSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHLMVQELRQVKENYGDARRTKI 490

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             + +      + +   EQ ++TVS+ G+ KR S   F         +R    + +    
Sbjct: 491 EAKIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNA-------VRD-QETGLKTGD 542

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-----RIASRATKGVVIFSTAKDERVVSV 894
            L+    VN  D ++L + KG    VPV +I     +          +     +E+V+S 
Sbjct: 543 QLIGQREVNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLN--KLVRVDSEEKVISA 600

Query: 895 ERIRESE 901
             ++  +
Sbjct: 601 IVVKNFD 607


>gi|50954717|ref|YP_062005.1| DNA topoisomerase IV subunit A [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951199|gb|AAT88900.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 823

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 283/856 (33%), Positives = 421/856 (49%), Gaps = 96/856 (11%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
               +     + I  V +T EMQ S+L YA +VI  RA+PD RDGLKPV RRIL+ M +M
Sbjct: 2   TPPDNQAPATERIEDVDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMTEM 61

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK AR++GEVMGK HPHG++AIY+AL RMAQD++LR+ LI+G GNFGS+D D
Sbjct: 62  GLRPDRGHVKSARVTGEVMGKLHPHGDSAIYEALVRMAQDFTLRVPLIDGHGNFGSLD-D 120

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE RL  AA  L  DL +D VDF PNYD    +P VL A +PN+LVNG  GIA
Sbjct: 121 GPAAARYTEARLAAAALALTGDLDEDVVDFVPNYDNQLMQPDVLPAAFPNLLVNGASGIA 180

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATN+  HNL EVV     ++DNPD  LD LM  I GPD P+G  I G +G+++AYAT
Sbjct: 181 VGMATNMAPHNLVEVVGAARHLLDNPDATLDDLMAYIPGPDLPSGGAIAGLSGVRDAYAT 240

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGS  +R    IE  +  +  +VVTE+PY V    ++EKI + V  K++  I+D+ D S
Sbjct: 241 GRGSFRMRAKVGIEPITARKNGLVVTELPYGVGPERVIEKIKDGVSAKKLKGISDVTDLS 300

Query: 304 DR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR  G R++I +K G S + +L QLYR+T L+  FS+N VAL    P+   L  +L  ++
Sbjct: 301 DRKHGLRLIIGVKTGFSPEAVLEQLYRHTPLEEGFSINSVALVEGGPQTLGLRELLSVYL 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R  VV RR+++ L + ++R H++ GL +A+ ++DE +++IR S + + AR  LMQ   
Sbjct: 361 GHRIRVVTRRSEFRLARRKERLHLVEGLLVAILDIDEAIQVIRSSDDTDQARSRLMQ--- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS +Q   ILELRL RLT   R ++  E + L  
Sbjct: 418 -----------------------VFDLSTLQADYILELRLRRLTRFSRIELEAERDQLRA 454

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED---------CI 533
           EI E   +L+SRS +  ++  EL  V     TPRRT + E    +              +
Sbjct: 455 EIAELEALLASRSLINALVSDELEQVAATFGTPRRTLLTEAKPSIASTSRGKAAAAQLEV 514

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
                 V +S  G + RV     +              + +  ++ L   ++H+ +   +
Sbjct: 515 ADVPCRVFLSTTGRILRVDAGTEQDTGLDRIQPPVRRSKHDAILSRL-DTTSHSEIGAVT 573

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS-------WNNL 646
           + G + +     LP   P        N + L  G ++   +   + +          +  
Sbjct: 574 NRGRLLRFSPVDLPAAPP--------NSIQLGAGVKVGDYLALADKKERILALVSLDSPK 625

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            +   T+ G V+R    D+    +     + L + DE++        ++++      Q +
Sbjct: 626 PIALGTRQGVVKRVAPGDWAS--KPEFEIIGLKAGDEVVGAAHTEDTDELVFVASDSQLL 683

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RFP +++R   GR + G+ GI+LA G +VI    V   + D    +              
Sbjct: 684 RFPAASVRP-QGRAAGGMAGIALAPGARVIFFGSVSATEKDTAVVVTVAVSDQTLPG--- 739

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                                S+ G GK +   +F    R+  G
Sbjct: 740 -------------------------------------SDPGSGKVSDFAEFPAKGRATGG 762

Query: 827 IRATDVSKINEIGALV 842
           +R+    K     AL 
Sbjct: 763 VRSQRFLKGETELALA 778



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 27/66 (40%)

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
              +V      D D+++ V+    L+R P   +R   RA  G+   + A   RV+    +
Sbjct: 658 GDEVVGAAHTEDTDELVFVASDSQLLRFPAASVRPQGRAAGGMAGIALAPGARVIFFGSV 717

Query: 898 RESEIV 903
             +E  
Sbjct: 718 SATEKD 723



 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 78/238 (32%), Gaps = 32/238 (13%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV---GVR-GISL---AKG 732
             D ILS    T  ++I   T  G+ +RF    +      +     GV+ G  L    K 
Sbjct: 553 KHDAILSRLDTTSHSEIGAVTNRGRLLRFSPVDLPAAPPNSIQLGAGVKVGDYLALADKK 612

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           ++++++  +             +    A     S    EI  LK    V G    E   E
Sbjct: 613 ERILALVSLDSPKPIALGTRQGVVKRVAPGDWASKPEFEIIGLKAGDEVVGAAHTEDTDE 672

Query: 793 LK--LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI---GALVAV--- 844
           L     +  +L         R  +   R   R+  G+    ++    +   G++ A    
Sbjct: 673 LVFVASDSQLL---------RFPAASVRPQGRAAGGMAGIALAPGARVIFFGSVSATEKD 723

Query: 845 ----FPVNDNDQIILVSD--KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
                 V  +DQ +  SD   G +      E     RAT GV      K E  +++  
Sbjct: 724 TAVVVTVAVSDQTLPGSDPGSGKV--SDFAEFPAKGRATGGVRSQRFLKGETELALAW 779


>gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622]
 gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622]
          Length = 813

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 279/784 (35%), Positives = 409/784 (52%), Gaps = 54/784 (6%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYVKCA 75
              S+ DE +  Y+ YA++VI  RA+PD+RDGLKPV RRILFGM     +    KY K A
Sbjct: 56  VPASLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSA 115

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++ G VMG+YHPHG+A+IY+AL RMAQD+SLR  L++G GNFGS+DGD  AA RYTECRL
Sbjct: 116 KVVGSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRL 175

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LL +LGK TV FRP YDG+ QEPVV+ AR P +L+NG  GIAVGMATNIP H+L
Sbjct: 176 AMLSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHL 235

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVS 254
           GE+VD  VA+I+NP +    L++ ++GPDFPTG  I   +  +++ Y +G+GSI IRG  
Sbjct: 236 GELVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEY 295

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E      +QIV+T IPY VNK+ ++ K  +LVRE+++  I D+RDES +   R+V+EL
Sbjct: 296 KLEDLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTK-DVRIVLEL 354

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNG-------YKPERFTLIGILKAFVAFREE 367
           K+ A+ ++++  LY+ T LQ+ F VN+  L           PER  L  IL  F+ FR +
Sbjct: 355 KKDANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFD 414

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV +R ++ L +   R H+L G       LDE+++IIR S   + A R+L+ R       
Sbjct: 415 VVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIAR------- 467

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L E Q  AILE++L +L  L    +  EL     EIK  
Sbjct: 468 -------------------FKLDEAQVDAILEMKLYKLARLEILVVEKELKEKRAEIKRI 508

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTVSH 544
             IL  ++++ G ++ EL  +K   +  RRTRI       ++   E  I  ED  V ++ 
Sbjct: 509 QGILKDKNKVWGTVRDELGEMKARYNDKRRTRIGGAGSEEMEFSAEAFIADEDAHVVITR 568

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKRV         R  K  S   +R+ D V  +   S   +++ FS+ G  Y  +  
Sbjct: 569 DGWVKRV---------REVKDPSTTRLREGDAVMAVLAGSLKANLVLFSNFGTAYVTRFN 619

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +P       G+ +      + GER+ + +    D        +V  TK G   R  L  
Sbjct: 620 DVPAS--TGYGEPVQKFFKFDDGERVVSALSL--DARLPRPQKLVGVTKQGMGMRFLLEP 675

Query: 665 FIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            ++++    +   K    DEI+ V+  T  + + + T+    +   ++ +   AG    G
Sbjct: 676 HLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELAG-PGKG 734

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V  I +  GD+V+    V  A  D        K           +        ++ S   
Sbjct: 735 VTVIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTGRGGKGHEMSKRD 794

Query: 784 NISE 787
            + E
Sbjct: 795 AVKE 798



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 82/226 (36%), Gaps = 23/226 (10%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                ++  + + T+ G   R     +R     ++       L +GD V  MA++  +  
Sbjct: 555 AFIADEDAHV-VITRDGWVKR-----VREVKDPSTT-----RLREGDAV--MAVLAGSLK 601

Query: 747 DYDERICYMKHMSAQR----RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          R       +G  E +         E  +S         + Q ++ 
Sbjct: 602 ANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVG 661

Query: 803 VSEKGFGKRTSSY-DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           V+++G G R        +S R+G+       +K  E   ++ V PV D D + ++++K +
Sbjct: 662 VTKQGMGMRFLLEPHLEVSTRAGR-----RYAKTGEGDEIIGVQPVTDRDLLAVLTEKTS 716

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAE 907
            +   V E+   +   KGV +      +RVV    +  ++   + E
Sbjct: 717 ALVCKVAEVNELAGPGKGVTVIKVDGGDRVVDFLAVSPAQKDAKLE 762



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 85/260 (32%), Gaps = 14/260 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T+ G V+R +               +L   D +++V   + + +++L +  G     
Sbjct: 564 VVITRDGWVKRVRE-------VKDPSTTRLREGDAVMAVLAGSLKANLVLFSNFGTAYVT 616

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + +    G      +      G++V+S   +        + +   K     R L+   
Sbjct: 617 RFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKLVGVTKQGMGMRFLLEPH 676

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            E  T      +  G   E    +       +  ++EK         +       GKG+ 
Sbjct: 677 LEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALVCKVAEVNELAGPGKGVT 736

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              V   + +   +AV P   + ++   + KG  + +   +  +  R  KG      +K 
Sbjct: 737 VIKVDGGDRVVDFLAVSPAQKDAKLEFETQKGRKLHLSPAKYEVTGRGGKGH---EMSKR 793

Query: 889 ERVVSVER----IRESEIVD 904
           + V  V R    I   E  D
Sbjct: 794 DAVKEVARAVTFIPLPEKKD 813


>gi|227889993|ref|ZP_04007798.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
 gi|227849437|gb|EEJ59523.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC
           33200]
          Length = 826

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 278/895 (31%), Positives = 444/895 (49%), Gaps = 93/895 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YDFTTNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D V     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLP-----AGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + +    NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLK---ANLNFLIATNDGYIKQVTLADLQP 627

Query: 668 INR---SGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     A+KL S D     +       + +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITAIKLKSNDSKVIRIDQVQPDSKEEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIKVG----------------------------- 717

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                ++++G  K+          R+ +G+      K      +
Sbjct: 718 --------------------IITQRGAFKQLKLNLINKITRAKRGVLVLRELKTKPH-RI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +A+    +N  + L +     I +  +E  +  R + G  +     D   VS+  
Sbjct: 757 MAISSYGENHILHLNTSSNRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPVSLTL 811


>gi|325136457|gb|EGC59063.1| DNA gyrase/topoisomerase IV, A subunit [Neisseria meningitidis
           M0579]
          Length = 533

 Score =  600 bits (1546), Expect = e-169,   Method: Composition-based stats.
 Identities = 256/534 (47%), Positives = 356/534 (66%), Gaps = 13/534 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I  D +       VS+ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDATIRHDHKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSV
Sbjct: 61  HELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSV 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG  
Sbjct: 121 DGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL + V+ C+ ++D PD ++D L++II+ PDFPTGA I G +G++  
Sbjct: 181 GIAVGMATNIPPHNLSDTVNACLRLLDAPDTEIDELIDIIQAPDFPTGATIYGLSGVREG 240

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRG +V+RG +HIE    +  RE IV+ EIPYQVNKA ++EKI +LVREK +  I++
Sbjct: 241 YKTGRGRVVMRGKTHIEPIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISE 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G RVVIELKR  +A+V+LNQLY+ T LQ  F +NMV L   +P    L  IL
Sbjct: 301 LRDESDKSGMRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQIL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F+  R EVV RRT + L KAR   H+  G A+A++N+DE++++I+ SPN   A+ +L+
Sbjct: 361 SEFLRHRREVVTRRTLFRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLL 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGT----------MYLSEVQTRAILELRLARLTGL 468
            R W +S +++++         +  +G            YLSE+Q  AIL + L  LTGL
Sbjct: 421 ARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGL 480

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            +++I     +L  +I + +DILS   R+  II+ EL          RR+ I  
Sbjct: 481 DQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEESNQLWR-RRRSEINP 533


>gi|311742662|ref|ZP_07716471.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
 gi|311314290|gb|EFQ84198.1| DNA topoisomerase IV subunit A [Aeromicrobium marinum DSM 15272]
          Length = 822

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 272/853 (31%), Positives = 401/853 (47%), Gaps = 90/853 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
                 EE ++ I    I +EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M  M
Sbjct: 5   TRTEPVEEFDEHIVDTDIREEMRASFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDDM 64

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  ++ +VK AR  G+VMG+ HPHG++AIYDAL R+ Q WS+R+ LI+G GNFGS D D
Sbjct: 65  GLRPDRGHVKSARPVGDVMGRLHPHGDSAIYDALVRLVQPWSMRVPLIDGHGNFGSPD-D 123

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTECR+  AA  +   + +DTVDFRPNYDG   EPVVL A  PN+LVNG  GIA
Sbjct: 124 PPAAMRYTECRMDPAAQAMTASIDEDTVDFRPNYDGRETEPVVLPASLPNLLVNGASGIA 183

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNI  HNL EVV     +I +P+ DLD LM  I GPD PTG  I+G  G+++AYAT
Sbjct: 184 VGMATNIAPHNLVEVVQALRHLIGHPEADLDDLMRFIPGPDLPTGGKIVGLDGVRDAYAT 243

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G GS  +R  + +E+    R+ IV++E+PY V    ++E + +LV+ K++  IADL++ +
Sbjct: 244 GNGSFKMRATARVEQVGR-RKGIVISELPYNVGPEKVIEAVKKLVQSKKLQGIADLKNLT 302

Query: 304 DRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           DR  G  +VIE+K G   + IL QLYR+T +++ F +N VAL   +P    L  +L  ++
Sbjct: 303 DRHSGLSIVIEVKNGFVPEAILEQLYRFTPMETSFGINAVALVDGQPRTLGLRQMLDVYL 362

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +VV RR+ +    A DR H+L GL +A+ ++DEV+++IR S N   A+  L     
Sbjct: 363 EHRYDVVRRRSTFRRAMAADRLHLLEGLLLALVDIDEVIQLIRSSENRGEAKDRL----- 417

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LSE Q   IL L L RLT   R  + +E+  L  
Sbjct: 418 ---------------------RSVFDLSEPQAEYILNLTLGRLTRYDRIVVESEMEELRR 456

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VREDMV 539
            I+    IL   + L G++  EL  +     TPRRT ++E                +   
Sbjct: 457 TIEALDAILGDETVLRGVVGDELAEMAATFGTPRRTILLESAGQTVTAATPVEVADDPCW 516

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             +S  G + R   S  R     G           D +      +    +   ++ G V 
Sbjct: 517 ALLSSTGLLAR--TSDDRPIGTDG------GRAKHDVIVSAVRTTARGEIGVVTAGGRVR 568

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           +  V  LP     A   +L   + +++  ++    P      + +   +   T+ G V+R
Sbjct: 569 RIGVLDLPALPATAGAPSLQGGVPVSEVVQLDDR-PLALMTFAEDVPGLALGTRQGVVKR 627

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            K       +      + L   D ++ +V   T    +   T   Q + F   A+R    
Sbjct: 628 VKPDHLSNRDEWDL--IGLADGDAVVGAVPLVTGTEQLAFVTSDAQLLHFGADAVRPQGR 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
                V G+ LA G  V++   V      +   +                          
Sbjct: 686 GGGG-VAGVKLAPGASVVAFGAVAAPGTAHVVTVSGSASALPG----------------- 727

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                                    ++ G  K +    +    R+  G+R   + K    
Sbjct: 728 -------------------------TQAGSAKVSPFELYPPKGRATGGVRCHRLLKGE-- 760

Query: 839 GALVAVFPVNDND 851
            A++  + V D +
Sbjct: 761 DAVILAW-VGDGE 772


>gi|302386254|ref|YP_003822076.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
 gi|302196882|gb|ADL04453.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium saccharolyticum
           WM1]
          Length = 755

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 259/750 (34%), Positives = 410/750 (54%), Gaps = 30/750 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E          + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M
Sbjct: 1   MSEKQGQKRGNMSEKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +K + K ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS+
Sbjct: 61  SELRLNHDKPHRKSARIVGDTMGKYHPHGDSSIYETLVVMSQIFKKGMPLVNGHGNFGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +GD  AA RYTE RL+K A  + L DL K TVDF PNYD + +EP VL  R PN+L+NG 
Sbjct: 121 EGDGAAAMRYTEARLEKFAEEVYLRDLDK-TVDFIPNYDETEKEPEVLPVRVPNLLINGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM+T+IP+HNLGEV+D   A IDNPDI +  LME + GPDFPTG +I  ++ + +
Sbjct: 180 EGIAVGMSTSIPSHNLGEVIDAVQAYIDNPDISICKLMEYLPGPDFPTGGIIANKSDLPS 239

Query: 240 AYATGRGSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIV 294
            Y TG G I +RG   +E  K   D++++V+TEIPY +  + + +    +A+LV  K++ 
Sbjct: 240 IYETGAGKIKLRGKIEVELGKRKADKDKLVITEIPYTMVGSGINKFLVDVADLVESKKLS 299

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           D+ D+ ++S+++G R+V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L
Sbjct: 300 DVVDISNQSNKEGIRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIADGRPETLNL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            GILK ++ F+ +   R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+
Sbjct: 360 KGILKNYLDFQYKNATRKYQTLLEKELEKKEIKEGLIKACDIIDMIIAVLRGSKNLKDAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM  + + S+I   +   ++ +       T++ +E Q  AILE+RL +L GL    + 
Sbjct: 420 NCLM--TGDISNINFKVKGFEEDA------KTLHFTEKQATAILEMRLYKLIGLEILQLE 471

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E      +I E   ILS+R  +  +IK +L  +K E  TPRRT I +G   + DE  I 
Sbjct: 472 KEYKETLAKIAEYEKILSNRKFMDKVIKDDLDQIKKEYATPRRTLIEDGKEAVYDETAIP 531

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
             ++   +   GY K +  + Y   +             E     +        +  F++
Sbjct: 532 VSEVTFVMDRFGYCKILDKATYDRNKET----------IETENPYVVNCLNTDKICIFTN 581

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +++ K   +P G  + +G  + N+   +        +   E          +FATK 
Sbjct: 582 TGNLHQVKAQDIPGGKLRDKGTPIDNLSKFDGTREEIVYLCHAEGL---KGRKFLFATKQ 638

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             V+     +F   N     A KL   D +L V+    + D++L T  G  +RF    I 
Sbjct: 639 ALVKLVPGEEFET-NNRTVAATKLPDDDMLLRVQLVNGQTDVVLQTSSGVFLRFLTEEIP 697

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
               +N+ GVRGI L +G+ + ++ ++   
Sbjct: 698 EMK-KNARGVRGIKLTQGEALEAVHLIGED 726



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 6/170 (3%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +   V++           +    +             D        +            C
Sbjct: 563 ENPYVVNCLNTDKICIFTNTGNLHQVKAQDIPGGKLRDKGTPIDNLSKFDGTREEIVYLC 622

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               LK +  L  +++   K     +F  +NR          +K+ +   L+ V  VN  
Sbjct: 623 HAEGLKGRKFLFATKQALVKLVPGEEFETNNR------TVAATKLPDDDMLLRVQLVNGQ 676

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             ++L +  G  +R    EI    +  +GV      + E + +V  I E 
Sbjct: 677 TDVVLQTSSGVFLRFLTEEIPEMKKNARGVRGIKLTQGEALEAVHLIGED 726


>gi|78211563|ref|YP_380342.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9605]
 gi|78196022|gb|ABB33787.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9605]
          Length = 822

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 270/752 (35%), Positives = 412/752 (54%), Gaps = 52/752 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  +L+++G+DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQAMLEEIGEDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG VA+I  P++  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLVALIRKPELSDEKLLELIPGPDFPTGGEVLISSGLRDTYLHGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHTEEVQPGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A    +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ FRE
Sbjct: 303 GMRVVVELRRDADPGKVLKDLQRRTALQSNFGAILLALVDGQPQQLSLRQLLQTFLDFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEANDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L RLTGL ++ +R EL+ L  + + 
Sbjct: 417 --------------------LDLSERQADAVLAMPLRRLTGLEQESLRQELDELRAKRQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL  +K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLDNRDQLLDAMVTELKGLKKRFSTPRRTRLVEGGDALMAERAASQRPNTELLRQQA 516

Query: 547 YV-----KRVPLSVYRAQRRGGKGRSGVVMRDED--------FVTDLFIVSTHTSVLFFS 593
                   RV +      +       G +  ++             +  +     +L  S
Sbjct: 517 LAALPGDGRVLIQADGQVKIFTPQVLGRLHLNDPCPVGDAPSPARVILPIEPPPRLLAVS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G + + +           +   +   L           +       + + L +   + 
Sbjct: 577 AGGRIAQVRWE-----FAGQQPGPIDRFLPTGLDGDPIVSL-LSLPSQNIDELSLGLLSS 630

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  +S+ + ++      +KL    E+ +   C  +  ++L + +G+ +R  I+  
Sbjct: 631 DGRFKRLPVSEVVDLSGRATSVLKLKEGVELNNAVICRNQGTLVLISDIGRLLRLRINEE 690

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
                GR + G   + L  G+Q++       A
Sbjct: 691 SLPLMGRLAQGPMTMRLLPGEQIVGAVCTEQA 722



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 9/124 (7%)

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVS 833
           L      +  +S        + E  +  +S  G  KR    +   +S R+        V 
Sbjct: 600 LPTGLDGDPIVSLLSLPSQNIDELSLGLLSSDGRFKRLPVSEVVDLSGRATS------VL 653

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERV 891
           K+ E   L       +   ++L+SD G L+R+ +NE  + +  R  +G +       E++
Sbjct: 654 KLKEGVELNNAVICRNQGTLVLISDIGRLLRLRINEESLPLMGRLAQGPMTMRLLPGEQI 713

Query: 892 VSVE 895
           V   
Sbjct: 714 VGAV 717



 Score = 45.6 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 57/168 (33%), Gaps = 8/168 (4%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD ++S+  +   + D             +R  +S   +      +   ++  +     
Sbjct: 605 DGDPIVSLLSLPSQNIDELSLGLLSSDGRFKRLPVSEVVDLSGRATSVLKLKEGVELNNA 664

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
              + +   +L +S+ G   R    +    +  R  +G     +        +V      
Sbjct: 665 VICRNQGTLVL-ISDIGRLLRLRINEESLPLMGRLAQGPMTMRLLPGE---QIVGA-VCT 719

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSVE 895
           +   ++L S +G + R+  + +R   R   G +      + +R+V V 
Sbjct: 720 EQAPLMLFSQRGMIGRIDCSGMRYNQRGDLGSMAVQVDAESDRLVGVS 767


>gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3]
 gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3]
          Length = 782

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 271/740 (36%), Positives = 402/740 (54%), Gaps = 39/740 (5%)

Query: 1   MTEHIISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++ I   + +++ G   V   +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDTIDDPNMKQDGGGHQVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMRELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  LLD L +D VDFR NYDG+  EPVVL A++PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTIVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGI 237
             GIAVGMATNIP HN+ E+ D C+ +I  PD   D L+  + GPDFPTG +I      I
Sbjct: 181 SSGIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +A
Sbjct: 241 AQAYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           D+RDES     R+++E + +    +V++  LYR + L+  FS+NM  L +G  P+  ++ 
Sbjct: 301 DVRDESA-DDIRLILEPRTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMK 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+AF+  R+EV++RR+++ L K   R  VL G  IA  NLD V+ IIR+  +P   + 
Sbjct: 360 EVLRAFLDHRQEVLLRRSRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDP---KA 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+  W     + L    +++ Y   + G   LSEVQ  AIL +RL  L  L   ++  
Sbjct: 417 ALMREEWGIDHPRAL----NEADYVSPAPGEGELSEVQAEAILNMRLRSLRRLEEMELIR 472

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED- 529
           E ++L  E  E  D+L+  +     I  +L   K           RRTR  E     E  
Sbjct: 473 ERDALMAERAEIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAEAGEVEEVP 532

Query: 530 -EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  I RE + V  S +G+V        RA          +  +D D    +F   T   
Sbjct: 533 LEAMIEREPITVVCSQMGWV--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDK 584

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F+S G  Y      LP G  +  G+ L  ++ L     I  I+             +
Sbjct: 585 LLVFASNGRFYTIGAANLPGG--RGMGEPLRLMVDLPNEAEIVDILI-----HQPERKLL 637

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V +T  GN      ++ +   R+GK  + +   +  L        + + + ++ G+ + F
Sbjct: 638 VASTA-GNGFVVPETEVVAQTRTGKQVLNVRDDERALICVPVAG-DHVAVVSQNGKFLVF 695

Query: 709 PISAIRVFAGRNSVGVRGIS 728
           P+  +    GR   GVR   
Sbjct: 696 PLDEMPEM-GRG-KGVRLQK 713



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 72/228 (31%), Gaps = 21/228 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    DF    R  + A   +  +  L      +   ++  +++G         +R   
Sbjct: 506 KKTFGKDFPGGARRTRFAEAGEVEEVPLEAMIEREPITVVC-SQMGW--------VRAMT 556

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R +    GD       + HA+      +             +           
Sbjct: 557 GHIDL-TRELKFKDGD---GPRFIFHAETTDKLLVFASNGRFYTIGAANLPGGRGMGEPL 612

Query: 778 DSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              V+     E    L    E+ +L  S  G G      +     R+GK +      +  
Sbjct: 613 RLMVDLPNEAEIVDILIHQPERKLLVASTAGNGFVVPETEVVAQTRTGKQVLNVRDDER- 671

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              AL+ V PV   D + +VS  G  +  P++E+    R  KGV +  
Sbjct: 672 ---ALICV-PVA-GDHVAVVSQNGKFLVFPLDEMPEMGR-GKGVRLQK 713


>gi|295110275|emb|CBL24228.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus obeum A2-162]
          Length = 748

 Score =  599 bits (1544), Expect = e-169,   Method: Composition-based stats.
 Identities = 237/730 (32%), Positives = 387/730 (53%), Gaps = 27/730 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K    + L DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQEVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D   A + +  I +  LM  I+GPDFPTG +++ +  ++  Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVKAYMKDNTISVRGLMRYIKGPDFPTGGIVVNKDDLRKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDR 305
            +RG   +EK  G ++Q+V+TEIPY +  A + + + +   LV  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEVEKLKGGKKQLVITEIPYTMLGANIGKFLNDVASLVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+    + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F 
Sbjct: 302 EGIRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQIIEYHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL+K  ++  V  GL  A   +D ++ I+R S N E  ++ L++      
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K           +  +   +  +E Q  AIL++RL +L GL  + ++ E       I 
Sbjct: 422 KFKS--------KASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEYQETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL +   +  +I +++ ++K E    RRT +      + +E  +    +   +   
Sbjct: 474 LYKDILENYDSMAAVIIKDMDAIKKEYGRKRRTAVENAEEAVYEEKKMEEMKVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K +  + Y   +              +    +F       +  F+  G ++  K   
Sbjct: 534 GYMKLIDQNAYERNKEA----------IHNESKYVFNCMNTDKICIFTDKGKMHTIKAAD 583

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+   + +G    N   L+        M +           ++F TK    +  + ++F
Sbjct: 584 IPLVRFRDKGTPADN---LSNYNSAEEQMLYVAPVGQIRTDRLLFVTKSSMCKLVEGAEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                    + KL   DE++ +    +   I+L +  G  +RF    I +   + ++GVR
Sbjct: 641 DVAK-RTIASTKLAEDDELIFIGGSAEMEQIVLQSHGGCFLRFLKQEISIMK-KTAIGVR 698

Query: 726 GISLAKGDQV 735
           G+ LA  D +
Sbjct: 699 GMKLADDDYL 708



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V++    K     +F ++ R          +K+ E   L+ +    + +QI+L S  
Sbjct: 623 LLFVTKSSMCKLVEGAEFDVAKR------TIASTKLAEDDELIFIGGSAEMEQIVLQSHG 676

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           G  +R    EI I  +   GV     A D+ +
Sbjct: 677 GCFLRFLKQEISIMKKTAIGVRGMKLADDDYL 708


>gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 750

 Score =  599 bits (1543), Expect = e-169,   Method: Composition-based stats.
 Identities = 243/742 (32%), Positives = 378/742 (50%), Gaps = 63/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I +       I  + + D ++  YL YA++ I+ RA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MADETILAPPP----IEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+V+GKYHPHG+ ++YDAL R+AQ +S R  L++GQGNFG++
Sbjct: 57  RQLKLDPAGGFKKCARVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD + +DTVDFR  YDG  +EPVVL A +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARMTAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  EV D  + +I +P   ++ L+  + GPDFPTG V +    G+  
Sbjct: 177 GIAVGMATSIPPHNADEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R   H E T     QI+VTEIPY V K+ ++EK+A+L++ K++  + D+
Sbjct: 237 AYRTGRGSFRLRARWHTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDI 296

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGI 357
            DES     R+VIE K R   A +++ QL+R T L++   +NM  L+  +  +   L  +
Sbjct: 297 DDESAE-DIRIVIEPKSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQV 355

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R  V+ RR+++ L +   R  VL GL IA  NLDEV+RIIR    P+ A    
Sbjct: 356 LQEWLDHRRVVLRRRSEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPA---- 411

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L++VQ  AIL +RL  L  L   +IR E 
Sbjct: 412 -------------------------LIARFALTDVQAEAILNMRLRSLRKLEEIEIRAEN 446

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV--EGLLDMEDE 530
           + L  E +  +++L S       I  E+  +K +         R+T       +    +E
Sbjct: 447 DRLTTEREGLVELLGSDEMQWDRISAEIKGIKKQFGKATPLGKRKTVTAALPDIDVAVEE 506

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  + +D +       T   ++
Sbjct: 507 ALIDKEPVTVVLSEKGWI--------RALKGHDGDLAKLTFKTDDVLKVAIKAQTTDKIV 558

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y  +   LP G  + +G+ +  ++ L++ +         E         +V 
Sbjct: 559 LFATNGKFYTLEASELPGG--RGQGEPVRLMIDLDEADE------LLETFVHKPGRKLVV 610

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  GN       + +   R GK  + L   +  L      + + + +  +  + + FP+
Sbjct: 611 ASSVGNGFVVTEDEVVAQTRKGKQVLNLGDGERALLCRP-AEGDAVAVVGENRRLLVFPL 669

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +         GVR      G
Sbjct: 670 AELNELT--RGRGVRLQKYKDG 689


>gi|268319491|ref|YP_003293147.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
 gi|262397866|emb|CAX66880.1| DNA topoisomerase IV subunit A [Lactobacillus johnsonii FI9785]
          Length = 826

 Score =  599 bits (1543), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/895 (30%), Positives = 445/895 (49%), Gaps = 93/895 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD+  D LM+ ++GPDFPTG ++LG  GI+ AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDVTTDDLMKFVKGPDFPTGGIVLGTKGIREAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLIAK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YDFTSNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLEKVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D +     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLP-----AGDKIVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + +    NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLK---ANLNFLIATNDGYIKQVTLADLQP 627

Query: 668 INR---SGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                     A+KL S D     +       + +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITAIKLKSNDSKVVRIDQVQPDSKEEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIKVG----------------------------- 717

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                                ++++G  K+          R+ +G+      K      +
Sbjct: 718 --------------------IITQRGAFKQLKLNLINKVTRAKRGVLVLRELKTKPH-RI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           +A+    +N  + L +     I +  +E  +  R + G  +     D   VS+  
Sbjct: 757 MAISSYGENHILHLNTSSNRHIELNTSEFPLGDRYSNGSFVLDPMTDGTPVSLTL 811


>gi|331668932|ref|ZP_08369780.1| DNA gyrase, A subunit [Escherichia coli TA271]
 gi|331064126|gb|EGI36037.1| DNA gyrase, A subunit [Escherichia coli TA271]
          Length = 717

 Score =  598 bits (1542), Expect = e-168,   Method: Composition-based stats.
 Identities = 313/753 (41%), Positives = 456/753 (60%), Gaps = 68/753 (9%)

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           +  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFP
Sbjct: 1   MPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP 60

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           T A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVNKA ++EKIA
Sbjct: 61  TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIA 120

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           ELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+
Sbjct: 121 ELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALH 180

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN+D ++ +IR
Sbjct: 181 HGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIR 240

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAI 457
            +P P  A+  L+   W   ++  +++   D +             DG  YL+E Q +AI
Sbjct: 241 HAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAI 300

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V+++    RR
Sbjct: 301 LDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 360

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+
Sbjct: 361 TEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFI 420

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
             L + +TH  +L FSS G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  
Sbjct: 421 DRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT 480

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
           E E     + V  AT +G V++  L++F ++  +GK+A+KL   DE++ V+  + E++++
Sbjct: 481 EFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVM 537

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+ VRF  S++R   G N+ GVRGI L +GD+V+S+ +     A           
Sbjct: 538 LFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPRGDGA----------- 585

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                     ILT ++ G+GKRT+  ++
Sbjct: 586 ------------------------------------------ILTATQNGYGKRTAVAEY 603

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I  R T
Sbjct: 604 PTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNT 661

Query: 878 KGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +GV++  TA+DE VV ++R+ E    ++ ++ +
Sbjct: 662 QGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 694



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 487 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 544

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 545 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 595

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 596 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 654

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 655 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 714

Query: 775 LKN 777
            + 
Sbjct: 715 EEE 717


>gi|260589533|ref|ZP_05855446.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|331082961|ref|ZP_08332081.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540101|gb|EEX20670.1| DNA gyrase subunit A [Blautia hansenii DSM 20583]
 gi|330399956|gb|EGG79614.1| hypothetical protein HMPREF0992_01005 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 748

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 248/729 (34%), Positives = 391/729 (53%), Gaps = 27/729 (3%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           + ++ I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ 
Sbjct: 3   DIQENIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMYELGIRYDRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y KCARI G+ MGKYHPHG+++IY+AL  MAQ++   L L++G GNFGS++GD  AA RY
Sbjct: 63  YRKCARIVGDTMGKYHPHGDSSIYEALVVMAQEFKKGLPLVDGHGNFGSIEGDGAAAMRY 122

Query: 131 TECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           TE RLQK    + L D+ K  VDF PN+D + +EP VL  + PN+LVNG  GIAVGMAT+
Sbjct: 123 TEARLQKITQEVYLSDMDKQVVDFLPNFDETEKEPEVLPVKIPNLLVNGADGIAVGMATS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  +A + N +I +  LME I+GPDFPTG +++ +  + + Y TG G I 
Sbjct: 183 IPPHNLGEVIDAVIAYMKNNEITVRELMEYIKGPDFPTGGIVVNKDDLLSIYETGTGKIK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQ 306
           IRG   +EK    +  +V+TEIPY +  A + + + +   L   K+  DI D+ ++S ++
Sbjct: 243 IRGKVEVEKGKNGKSLLVITEIPYTMIGANIGKFLNDVAALSESKKTTDIVDIANQSSKE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK+GA  + + N LY+ T L+  F VNM+A+   KPE  +L  I++  V F+ 
Sbjct: 303 GIRIVIELKKGADVENLKNMLYKKTRLEDTFGVNMLAVADGKPETLSLKQIIEHHVDFQF 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           ++  R+   LL K R+   V  GL  A   +D ++ I+R S + E  ++ L+        
Sbjct: 363 DIATRKYTSLLAKERENQEVQEGLIKACDVIDLIIEILRGSKSREQVKKCLIYGETEGIH 422

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
            K        +  +      ++ +E Q  AIL++RL +L GL  + +  E      +I  
Sbjct: 423 FK--------TKTSERQAKKLHFTERQATAILDMRLYKLIGLEIETLMAEHEETMKKIAL 474

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++ S +  +I +EL  VK E    RRT +      + +E  I   ++V  +   G
Sbjct: 475 YEDILNNYSSMSKVIIKELQKVKKEYSRVRRTVVENAAEAVYEEKKIEEMEVVFLMDRFG 534

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y + +  S Y   +             +     +        +  F+  G +Y  KV  L
Sbjct: 535 YARTIDKSTYERNKETA----------DSENKYVLTCMNTGKICLFTDAGRMYTIKVQEL 584

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N+ + +        +    D        + F T  G V+  +  +F 
Sbjct: 585 PFGKFRDKGIPVDNVSNYDSAAEQIVFVGSMADIIH---TTLCFVTAKGMVKLVEGKEFD 641

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   + KL   D I+ V+       ++L TK G  ++F  + I  +  + ++GVRG
Sbjct: 642 VAK-RTISSTKLAEEDSIVMVQNAEAMEHLVLQTKEGYFLKFLKAEI-PYKKKTALGVRG 699

Query: 727 ISLAKGDQV 735
           I + + D V
Sbjct: 700 IKMNESDCV 708



 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 6/162 (3%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++   V++           D    Y   +         D        ++           
Sbjct: 553 SENKYVLTCMNTGKICLFTDAGRMYTIKVQELPFGKFRDKGIPVDNVSNYDSAAEQIVFV 612

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                +    +  V+ KG  K     +F ++ R          +K+ E  ++V V     
Sbjct: 613 GSMADIIHTTLCFVTAKGMVKLVEGKEFDVAKR------TISSTKLAEEDSIVMVQNAEA 666

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            + ++L + +G  ++    EI    +   GV      + + V
Sbjct: 667 MEHLVLQTKEGYFLKFLKAEIPYKKKTALGVRGIKMNESDCV 708


>gi|269956722|ref|YP_003326511.1| DNA topoisomerase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305403|gb|ACZ30953.1| DNA topoisomerase (ATP-hydrolyzing) [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 855

 Score =  598 bits (1541), Expect = e-168,   Method: Composition-based stats.
 Identities = 264/884 (29%), Positives = 399/884 (45%), Gaps = 111/884 (12%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +      E  ++ I  + +  EM++S+L YA +VI  RA+PD RDGLKPV RRIL+ M  
Sbjct: 4   KTTAPPVEPFDEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMAD 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  ++ YVK +R+ GEVMGK HPHG+ AIYDAL R+AQD+SLRL L++G GNFGS+D 
Sbjct: 64  MGLRPDRPYVKSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLD- 122

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE RL   +  +   L +D VDF PNYD    +P VL +  PN+LVNG  GI
Sbjct: 123 DGPAAPRYTEARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGI 182

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVGMATN+  HNL EVV     ++ NP   L+ +M  + GPD PTG  I+G  GI++AY 
Sbjct: 183 AVGMATNMAPHNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIVGLDGIRDAYR 242

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRG+   R  + IE  +  R  I +TE+PY V    ++EKIA+ V+ K+I  +A+++D 
Sbjct: 243 SGRGTFRTRATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDL 302

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+V+E+K G   + +L QLYR T L+  F +N VAL G +P    L+ +L+ +
Sbjct: 303 TDRTHGMRLVVEVKTGFDPEAVLEQLYRTTPLEDSFGINNVALVGGQPRTLGLLELLRVW 362

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  R EVV RRT Y L K ++R H++ GL +A+ ++DEV+++IR S +   AR  LM   
Sbjct: 363 VEHRIEVVRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLM--- 419

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q   IL+L+L RLT   R ++  E + L 
Sbjct: 420 -----------------------DVFDLSEPQATYILDLQLRRLTKFSRIELEKEQSELE 456

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI-------- 533
            EI    +IL S + L  ++  E+  V     TPRRT +++                   
Sbjct: 457 KEIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTVLLDSAGGATTSAAAAPGGARGR 516

Query: 534 ---------VREDMVVTVSHLGYVKRVP---------------------LSVYRAQRRGG 563
                          V +S  G + R                       L    A    G
Sbjct: 517 KPAEISLEIADAPTHVLLSATGLLARTAVAPAAAPTASEGDQLDLDGVALGAPGAPGASG 576

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
                      D +    + ++ + +   ++ G + +     LP   P     +L   + 
Sbjct: 577 AVSRHGRRHAHDALRGDVMTTSRSDIGLVTTAGRMLRVSALELPSIPPTDGAPSLSGGIP 636

Query: 624 LNQGERITT-IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           +++   +            + +   +   T  G V+R   SD    N+     + L   D
Sbjct: 637 VSELVELAPGEEALAVVSLADDAPTLALGTAGGVVKRVAASDVPS-NKDEWTVIGLKDGD 695

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++       +++++  +     + +  SA+R         + GISLA G  V+   +  
Sbjct: 696 SVVGAAPAGDDDEVVFISSDSSLLHYAASAVRPQGRAGGG-IAGISLAAGQTVVFFGVAR 754

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
            A       +           +                                      
Sbjct: 755 AAVRPELTVVTVGGSAGQLPGVGG------------------------------------ 778

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               G  K T    +    R+  G+R+    K      LV  + 
Sbjct: 779 ----GSVKVTPYELYPGKGRATGGVRSHRFLKGE--DRLVLAWV 816


>gi|329667367|gb|AEB93315.1| topoisomerase IV subunit A [Lactobacillus johnsonii DPC 6026]
          Length = 826

 Score =  597 bits (1539), Expect = e-168,   Method: Composition-based stats.
 Identities = 276/883 (31%), Positives = 441/883 (49%), Gaps = 93/883 (10%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K
Sbjct: 2   TQTNERIRELPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDNNTYDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA R
Sbjct: 62  PYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMREPLIEMHGNNGSMDGDGPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K ++ LL D+ K+TV    N+D +  EP VL A +PN+LVNG  GI+ G AT 
Sbjct: 122 YTESRLSKISNLLLQDIDKETVQMILNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV++  V ++ +PD   D LM+ ++GPDFPTG ++LG  GIK AY TGRG I 
Sbjct: 182 IPPHNLAEVIEAAVYLLKHPDATTDDLMKFVKGPDFPTGGIVLGTKGIKEAYETGRGRIQ 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I++  G R+QIVVTE+P+ VNKA M++KI E+   K I  I+++RDE+DR G  
Sbjct: 242 VRSKTTIQEIKGHRQQIVVTEVPFGVNKAMMVKKIDEIRLNKEIDGISEVRDETDRHGLS 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIELK+GA +  ILN L++ T LQ  ++ NMVA++   P +  L  IL +++A +++VV
Sbjct: 302 IVIELKKGADSQNILNYLFKNTDLQVSYNFNMVAIDRMTPVQVGLKRILSSYLAHKKDVV 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +RT++ L KA+ R  ++ GL  A+  LD+V++ IR S + + A++ L+ +         
Sbjct: 362 TKRTEFDLKKAKQRLEIVEGLIHALDILDQVIKTIRSSKDKKDAKKNLISK--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ L+L RLT    + ++ E   L  +I++  +
Sbjct: 413 -----------------YEFTHNQAEAIVSLQLYRLTNTDVNQLKKEQADLNKKIEKFNE 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGY 547
           ILS    L  ++ +EL +VK E  +PRRT I      +++ ++  +  ED+ V VS  GY
Sbjct: 456 ILSDNKVLERVVVKELNAVKREFGSPRRTEITAKAAKIEINEKALVADEDVRVLVSKDGY 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR  L  +++      G         D V     +ST  ++  F++ G +    V  L 
Sbjct: 516 LKRSSLRSFQSTDDEDNGLP-----AGDKVVFEKTMSTLDNLYIFTNKGNLIYRPVHELI 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G+ L   + L+  E I  +    + +    NL  + AT  G +++  L+D   
Sbjct: 571 ETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLK---ANLNFLIATNDGYIKQVTLADLQP 627

Query: 668 INRSGKIA---MKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
                  A   +KL S D     +       + +I L T     VRF IS I   +G  +
Sbjct: 628 TRTYKSRAITSIKLKSNDSKVVRIDQVQPDSKQEITLITNQAYAVRFDISEI-PTSGSKA 686

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
           VGV+ ++L   D +++  +      D  +                               
Sbjct: 687 VGVKSVNLKDDDYIVNYVLADPKYIDLIK------------------------------- 715

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             I  ++++G  K+          R+ +G+      K      +
Sbjct: 716 ------------------IGIITQRGAFKQLKLSLINKVTRAKRGVLVLRELKTKPH-RI 756

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +A+    +N  + L +     I +  +E  +  R + G  +  
Sbjct: 757 MAISSYGENHILHLNTSSDRHIELNTSEFPLGDRYSNGSFVLD 799



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 101/283 (35%), Gaps = 26/283 (9%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +N L   Q +    I  F E  S    L  V   +   V+R    +F    R+   A   
Sbjct: 436 VNQLKKEQADLNKKIEKFNEILSDNKVLERVVVKELNAVKR----EFGSPRRTEITAKAA 491

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-- 736
               EI        E+  +L +K G   R   S++R F   +        L  GD+V+  
Sbjct: 492 K--IEINEKALVADEDVRVLVSKDGYLKR---SSLRSFQSTDDEDN---GLPAGDKVVFE 543

Query: 737 -SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
            +M+ + +     ++     + +         +T +  S +     +  I          
Sbjct: 544 KTMSTLDNLYIFTNKGNLIYRPVHELIETKWKETGQHLSQEIGLDSDEEIIRVFEVNDLK 603

Query: 796 KEQFILTVSEKGFGKRTSSYDFRIS----NRSGKGIRATDVSKINEIGALVAVFPVNDN- 850
                L  +  G+ K+ +  D + +    +R+   I +  +   +    +V +  V  + 
Sbjct: 604 ANLNFLIATNDGYIKQVTLADLQPTRTYKSRA---ITSIKLKSNDS--KVVRIDQVQPDS 658

Query: 851 -DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             +I L++++   +R  ++EI  +     GV   +   D+ +V
Sbjct: 659 KQEITLITNQAYAVRFDISEIPTSGSKAVGVKSVNLKDDDYIV 701


>gi|153813001|ref|ZP_01965669.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
 gi|149830948|gb|EDM86038.1| hypothetical protein RUMOBE_03408 [Ruminococcus obeum ATCC 29174]
          Length = 748

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 238/730 (32%), Positives = 392/730 (53%), Gaps = 27/730 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E +++ +     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   ETKQENVIRTDYSEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQD+     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K    + L DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQDVFLSDLDKNVVDFVPNFDETEKEPSVLPVRIPNILVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEV+D   A + +  I +  LM  I+GPDFPTG +++ +  +   Y TG G I
Sbjct: 182 SIPPHNLGEVIDAVKAYMKDNTISVKGLMRYIKGPDFPTGGIVVNKDDLHKIYETGSGKI 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDR 305
            +RG   +EK  G R+Q+V+TEIPY +  A + + + +   L+  K+  DI D+ ++S +
Sbjct: 242 RLRGKVEVEKLKGGRKQLVITEIPYTMLGANIGKFLNDVASLIETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELK+    + + N LY+ T L+  F VNM+A+   +PE  +L  I++  V F 
Sbjct: 302 EGIRIVLELKKDTDVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLSLKQIIEYHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E+  R+   LL+K  ++  V  GL  A   +D ++ I+R S N E  ++ L++      
Sbjct: 362 FEITTRKYHTLLDKELEKQEVQEGLIKACDVIDLIIEILRGSKNREQVKKCLVEGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K           +  +   +  +E Q  AIL++RL +L GL  + ++ E       I 
Sbjct: 422 KFKS--------KASEKAAAKLLFTERQANAILDMRLYKLIGLEIEALQAEHEETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL +   +  +I +++ ++K E    RRT I      + +E  +   ++   +   
Sbjct: 474 LYKDILDNYDSMAAVIIKDMDAIKKEYGRKRRTAIENAEEAVYEEKKMEEMEVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+K +  + Y   +              +    +F       +  F+  G ++  K   
Sbjct: 534 GYMKLIDKNAYERNKEA----------VHNENKYVFNCMNTDKICIFTDTGKMHTIKAVD 583

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+G  + +G  + N   L+  +     M +        +  ++F TK    +  + ++F
Sbjct: 584 IPLGRFRDKGTPVDN---LSNYDSSQERMLYVAPVGQLRSDRLLFVTKTSMCKLVEGAEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                    + KL   DE++ + + ++   I+L +  G  +RF    +     + ++GVR
Sbjct: 641 DVAK-RTIASTKLADEDELIFIGSASEMEQIVLQSHGGCFLRFLAQEVSTMK-KTALGVR 698

Query: 726 GISLAKGDQV 735
           G+ LA  D +
Sbjct: 699 GMKLADDDYL 708



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L V++    K     +F ++ R          +K+ +   L+ +   ++ +QI+L S  
Sbjct: 623 LLFVTKTSMCKLVEGAEFDVAKR------TIASTKLADEDELIFIGSASEMEQIVLQSHG 676

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           G  +R    E+    +   GV     A D+ +
Sbjct: 677 GCFLRFLAQEVSTMKKTALGVRGMKLADDDYL 708


>gi|300783222|ref|YP_003763513.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
 gi|299792736|gb|ADJ43111.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32]
          Length = 828

 Score =  597 bits (1538), Expect = e-168,   Method: Composition-based stats.
 Identities = 282/860 (32%), Positives = 409/860 (47%), Gaps = 104/860 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T+   S+ +     +    +  E+++SYL YA +VI  RA+PD RDGLKPVHRRIL+ M 
Sbjct: 9   TKVDPSAFDAAGAQVFENPLKTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILYSMN 68

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G      YVK +R+ G+VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D
Sbjct: 69  ENGYRPTHAYVKSSRVVGDVMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD 128

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE R+   A  L+ +LG+DTVDFRPNYDGS +EP VL A +PN+LVNG  G
Sbjct: 129 -DGPAASRYTEARMSPEAMQLVGELGEDTVDFRPNYDGSLEEPSVLPAAFPNLLVNGTSG 187

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNLGEV+     +I +P   LD LME + GPD PTG  +LG   ++ AY
Sbjct: 188 IAVGMATNMIPHNLGEVIAAARWLITHPSATLDKLMEFVPGPDLPTGGSLLGLDEVRRAY 247

Query: 242 ATGRGSIVIRGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIAD 298
            TGRG + +R        + S  R+ I VTE+PY V    ++EKI + V + KR+  IAD
Sbjct: 248 ETGRGVVRMRANCETGPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIAD 307

Query: 299 LRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++D +DR  G R+VIE K G +   +L  LYR T L+  F +N + L   +P+   L  +
Sbjct: 308 VKDLTDRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKEL 367

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+  R +VV RRTKY   K  +R H++ GL IA+ N+D+V+R+IR S N + A+  L
Sbjct: 368 LEVFLRHRYDVVTRRTKYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAQAAKDGL 427

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R                            LSE+Q   IL+  L RLT   R ++ +E 
Sbjct: 428 MTR--------------------------FKLSEIQATYILDTPLRRLTKYDRLELESEQ 461

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--- 534
             L  EI E   IL   S L  ++  EL  +  +  T RRT +++G L            
Sbjct: 462 ERLREEIAELSKILDDESVLKKLVSAELAKIAKDFPTERRTALIDGDLKEVLAASKPSGP 521

Query: 535 ----REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +   V +S  G V R       A     + R        D V  L   +    +L
Sbjct: 522 LEVADDPCQVILSATGLVARTAAESEEAT----ETRRRNGRVKHDAVAALVHTTARGQIL 577

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWN 644
             +S G  +K  V  LP+   Q        G A   ++ L +GE +  I P  E   +  
Sbjct: 578 LVTSRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGETVVGIAPLGE--QAAG 635

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLG 703
           +  +   T+ G V+       +         + L   DE++     T  ++ +   +   
Sbjct: 636 SPGLALGTRAGVVKICSPEWPV--RSDEFEVISLKDGDEVVGATWLTDGSETLAFVSSEA 693

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +++  S +R   G    G+ G++L+    V+    V   D ++ E             
Sbjct: 694 SLLKYAASLVRP-QGLKGGGMAGMNLSGDASVVFFGAVRTDDDEHGEP------------ 740

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNR 822
                                                + ++  G   K T   ++    R
Sbjct: 741 -------------------------------------MVITATGLSVKVTPFSEYPAKGR 763

Query: 823 SGKGIRATDVSKINEIGALV 842
           +  G+RA    K      + 
Sbjct: 764 ATGGVRAQRFLKGETALRVA 783



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 91/267 (34%), Gaps = 20/267 (7%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G V R       +   + +   ++        V T  +   ILL T  G
Sbjct: 526 DDPCQVILSATGLVARTAAES-EEATETRRRNGRVKHDAVAALVHTTARGQ-ILLVTSRG 583

Query: 704 QCVR---FPISAIRVFAGRNS-VGVRGIS----LAKGDQVISMAIVLHADADYDERICYM 755
           +  +    P+  +   AG  S  G         L KG+ V+   I    +         +
Sbjct: 584 RAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGETVVG--IAPLGEQAAGSPGLAL 641

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              +   ++ S +    +      S++          L    + +  VS +    + ++ 
Sbjct: 642 GTRAGVVKICSPEWPVRSDEFEVISLKDGDEVVGATWLTDGSETLAFVSSEASLLKYAAS 701

Query: 816 DFRISNRSGKGIRATDVSKINEIGALV--AVFPVNDND--QIILVSDKGTLIR-VPVNEI 870
             R     G G+   ++S      ++V       +D++  + ++++  G  ++  P +E 
Sbjct: 702 LVRPQGLKGGGMAGMNLS---GDASVVFFGAVRTDDDEHGEPMVITATGLSVKVTPFSEY 758

Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897
               RAT GV      K E  + V  I
Sbjct: 759 PAKGRATGGVRAQRFLKGETALRVAWI 785



 Score = 41.3 bits (95), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 79/251 (31%), Gaps = 46/251 (18%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L + D+++ +   ++        K G   RF +S I+     ++       L K D++
Sbjct: 402 IALLNIDKVIRLIRESENAQ---AAKDGLMTRFKLSEIQATYILDTP---LRRLTKYDRL 455

Query: 736 ------------ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
                       I+    +  D    +++   +     +   +     +        +  
Sbjct: 456 ELESEQERLREEIAELSKILDDESVLKKLVSAELAKIAKDFPTERRTALIDGDLKEVLAA 515

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSY-----DFRISNRSGKGIRATDVSKINEI 838
           +      +      Q IL+ +  G   RT++      +     R+G            + 
Sbjct: 516 SKPSGPLEVADDPCQVILSAT--GLVARTAAESEEATE--TRRRNG----------RVKH 561

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV---------IFSTAKDE 889
            A+ A+       QI+LV+ +G   +  V  + +       V          +    K E
Sbjct: 562 DAVAALVHTTARGQILLVTSRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGE 621

Query: 890 RVVSVERIRES 900
            VV +  + E 
Sbjct: 622 TVVGIAPLGEQ 632


>gi|266624328|ref|ZP_06117263.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
 gi|288863830|gb|EFC96128.1| DNA gyrase subunit A [Clostridium hathewayi DSM 13479]
          Length = 745

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 265/728 (36%), Positives = 405/728 (55%), Gaps = 30/728 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIVKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLNHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAEEVYLKDLDK-TVEFIPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D  +A IDNPDI    LME + GPDFPTG +I  ++G+   Y TG G I +RG
Sbjct: 182 HNLGEVIDAVMAYIDNPDISTRELMEYMPGPDFPTGGIIANKSGLAEIYETGSGKIKLRG 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              IE  K   D++++V+TEIPY +  A + +    +AELV  K++ D+ D+ ++S++ G
Sbjct: 242 KIDIELGKRKADKDKMVITEIPYTMIGAGINKFLVDVAELVESKKLTDVVDISNQSNKDG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + I N LY+ T L+  + VNM+A+ G +PE   L GILK ++ F+  
Sbjct: 302 IRIVLELKKDADVEKIRNILYKKTKLEDTYGVNMLAIAGGRPETLNLKGILKNYLDFQYH 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+  LM    +    
Sbjct: 362 NATRKYQALLEKELEKKEIREGLIKACDIIDLIIAVLRGSKNLKDAKACLMTGDTS---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               ++    S        ++ +E Q  AILE+RL +L GL    +  E      +I E 
Sbjct: 418 ----NIKFRVSGFAEDAKNLHFTEKQASAILEMRLYKLIGLEILALEKEYKETMAKIAEY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL SRS +  +IK++L ++K+E  TPRRT I +G   + DE  +   ++V  +   GY
Sbjct: 474 RHILESRSNMDVVIKKDLAAIKEEFATPRRTLIEDGKEAVYDETAVAVSEVVFVMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  S Y   R             E     +        +  F++ G +++ K   +P
Sbjct: 534 CKLLDKSTYDRNRET----------IETENVHVVSCFNTDKICMFTNTGNLHQVKAADIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+   +  +     +   E   S      +FAT+   V+R    +F  
Sbjct: 584 YGKLRDKGTPIDNLSKYDGTKEEIIYLCSAE---SMKGSRFLFATRQALVKRVPGEEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N     A KL   D ++S+     E +++L T  G  +RF +  I     +NS GVRGI
Sbjct: 641 -NNRTVAATKLQDGDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEMK-KNSRGVRGI 698

Query: 728 SLAKGDQV 735
            LA+G+++
Sbjct: 699 KLAQGEEL 706



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 6/174 (3%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +   V+S           +    +    +        D        +            C
Sbjct: 552 ENVHVVSCFNTDKICMFTNTGNLHQVKAADIPYGKLRDKGTPIDNLSKYDGTKEEIIYLC 611

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               +K    L  + +   KR    +F  +NR          +K+ +   +V++  +   
Sbjct: 612 SAESMKGSRFLFATRQALVKRVPGEEFETNNR------TVAATKLQDGDGVVSILVLRAE 665

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            +++L +  G  +R  + EI    + ++GV     A+ E + +V  + E  +V+
Sbjct: 666 TEVVLQTSNGVFLRFALEEIPEMKKNSRGVRGIKLAQGEELETVYLLGEDPVVE 719



 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 64/194 (32%), Gaps = 9/194 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    + G  +    S + +   + +         E + V +C   + I + T  G   +
Sbjct: 525 VFVMDRFGYCKLLDKSTYDRNRETIET--------ENVHVVSCFNTDKICMFTNTGNLHQ 576

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
              + I     R+  G    +L+K D      I L +               A  + + G
Sbjct: 577 VKAADIPYGKLRD-KGTPIDNLSKYDGTKEEIIYLCSAESMKGSRFLFATRQALVKRVPG 635

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  E  +    ++   +        +   E  ++  +  G   R +  +     ++ +G+
Sbjct: 636 EEFETNNRTVAATKLQDGDGVVSILVLRAETEVVLQTSNGVFLRFALEEIPEMKKNSRGV 695

Query: 828 RATDVSKINEIGAL 841
           R   +++  E+  +
Sbjct: 696 RGIKLAQGEELETV 709


>gi|170782025|ref|YP_001710357.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156593|emb|CAQ01744.1| DNA gyrase subunit A [Clavibacter michiganensis subsp. sepedonicus]
          Length = 848

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 285/852 (33%), Positives = 418/852 (49%), Gaps = 88/852 (10%)

Query: 1   MT-EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+     ++ +E  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ 
Sbjct: 1   MSPSTTHTTPDEPSERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  ++ +VK AR++GEVMGK HPHG++AIYDA+ RMAQ ++LR+ LI+G GNFGS
Sbjct: 61  MSEMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQPFTLRVPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  +++ L +D VDF PNYD +F +P VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVV     +ID+PD  LD LM  + GPD PTG  I+G +G+K+
Sbjct: 180 SGIAVGMATNMVPHNLIEVVGAARHLIDHPDATLDDLMAFVPGPDLPTGGTIIGLSGVKD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R    +E  +  +  +VVTE+PY V    ++EKI + V+ K++  I ++
Sbjct: 240 AYLTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR  G R+VIE+K G + + +L QLYRYT L+  FS+N VAL    P+   L  +L
Sbjct: 300 TDLTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSINNVALVDGSPQTLGLKELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +VA R +VV RRT+Y L + ++R H+++GL IA+ ++DEV+++IR S + E AR  LM
Sbjct: 360 QVYVAHRLDVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LS +Q   ILELRL RLT   R ++  E +
Sbjct: 420 --------------------------DVFDLSTLQADYILELRLRRLTRFSRIELEEERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI----- 533
            L  EI E   IL+   RL  ++  EL  V D   TPRRT + E    +           
Sbjct: 454 RLQAEIAELEAILADPRRLRALVSTELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPV 513

Query: 534 ---VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                    V +S  G   RV L         G     V     D V      ++ T + 
Sbjct: 514 LEIADVPCRVLLSTTGRAVRVDLPT----DAPGTPLQTVRRSSHDAVLTAIETTSRTRIG 569

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G +       LP+    +        +  +               +   +  +  
Sbjct: 570 AITNTGRLITMTPVDLPVVPVASVQLGAGVRIR-DYLGLTDRKERVVALVALGTDEAIAL 628

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T+ G V+R   S          IA  L   DE++      + ++++  T   Q + FP 
Sbjct: 629 GTRQGVVKRVAPSALPAKPEYEVIA--LKKGDEVVGARQGAETDELVFVTSEAQLLHFPA 686

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++R   G  + G+ G++L  G  V+  + V    A+          ++           
Sbjct: 687 VSVRP-QGVQAGGIAGVNLGAGAHVLFFSSVAPEGAEVVTVSASSATIAGVDP------- 738

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                               G  K ++  DF    R+  G+RA 
Sbjct: 739 ------------------------------------GRAKVSAFGDFPRKGRATGGVRAH 762

Query: 831 DVSKINEIGALV 842
              K  +  AL 
Sbjct: 763 AYLKGEDHLALA 774



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 7/107 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           ++ I   + +G  KR +             + A       +   +V      + D+++ V
Sbjct: 623 DEAIALGTRQGVVKRVAPSALPAKPEYE--VIALK-----KGDEVVGARQGAETDELVFV 675

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           + +  L+  P   +R       G+   +      V+    +      
Sbjct: 676 TSEAQLLHFPAVSVRPQGVQAGGIAGVNLGAGAHVLFFSSVAPEGAE 722


>gi|167746703|ref|ZP_02418830.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
 gi|167653663|gb|EDR97792.1| hypothetical protein ANACAC_01414 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  596 bits (1537), Expect = e-168,   Method: Composition-based stats.
 Identities = 242/735 (32%), Positives = 397/735 (54%), Gaps = 35/735 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++ +  ++ + K
Sbjct: 3   EHIIRAEFSEVMQKSYIDYAMSVICARALPDIRDGLKPVQRRVLYAMDELNLRHDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY++L  M Q++   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYESLVVMEQEFKKGMPLVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K    + L DL K+ VDF  N+D + +EP VL  R PN+L+NG  GIAVGM T+IP 
Sbjct: 123 RLKKFTQEVYLADLDKNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD  +A +++  +  + L+  I+GPDFPTG +++ +  IK  Y  G G + +RG
Sbjct: 183 HNLGEVVDAMIAYLEDESVANEDLLTYIQGPDFPTGGLVVNKKDIKTIYTEGSGKLKLRG 242

Query: 253 VSHIEKTSGDRE--QIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
               E      E  ++V+TEIPY +  A + +    +  LV  K+  DIAD+ +ES ++G
Sbjct: 243 KVVFEPGKKRGEKDKLVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+G   + + N LY+ T L+  F VNM+A+   +PE  +L  I+     F   
Sbjct: 303 IRIVLELKKGTDIERLKNLLYKKTKLEDTFGVNMLAIVDGRPETLSLRDIIAHHTEFHYG 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +V R+ + LL+K  D+  V  GL  A   +D ++ I+R S N + A+  L +        
Sbjct: 363 LVKRKYQTLLSKLYDQREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKG------- 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            ++ ++   SS ++     +  +E Q  AIL+LRL +L GL    +R E   +   I E 
Sbjct: 416 -EVGNIRFKSSESMIEACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVANIAEY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            DIL +   +  ++KQ+L+ +K E    RRT + +G   + +E+ +  E +   +   GY
Sbjct: 475 EDILHNPVSMQRVMKQDLMKIKKEYQRERRTVVEDGAEAVFEEEPLKEEQVYFVMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K    + Y+  +                   +        +  F+  G +++ KV  +P
Sbjct: 535 AKTFDKATYQRNQENASRD----------YKYIVPCMNTDKICIFTDTGVMHQIKVLDIP 584

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+ + +  +     +   E  +  +   + FAT+ G ++    ++F  
Sbjct: 585 AGKYKDKGTPIDNLGNYDSSDEAIIAVLAAEAMTHDS---LFFATEQGMLKIVSGTEFQ- 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE------NDILLTTKLGQCVRFPISAIRVFAGRNS 721
           + +    A KL   D +LSV+    E      + ++L TK G  +RF +  +     + +
Sbjct: 641 VTKRTVSATKLSDGDALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEKK-KGA 699

Query: 722 VGVRGISLAKGDQVI 736
           VGVRGI L K D ++
Sbjct: 700 VGVRGIKLNKDDILL 714



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 12/162 (7%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++            D  + +   +         D         +               
Sbjct: 556 YIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLGNYDSSDEAIIAVLAAE 615

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--- 850
            +    +   +E+G  K  S  +F+++ R          +K+++  AL++V P+      
Sbjct: 616 AMTHDSLFFATEQGMLKIVSGTEFQVTKR------TVSATKLSDGDALLSVKPLKTEGGL 669

Query: 851 ---DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              D +IL + +G  +R  + E+    +   GV      KD+
Sbjct: 670 IKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDD 711



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 85/267 (31%), Gaps = 47/267 (17%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E+E            + G  +    + + +   +     K         +  C   +
Sbjct: 513 AVFEEEPLKEEQVYFVMDRFGYAKTFDKATYQRNQENASRDYKY--------IVPCMNTD 564

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ-------VISMAIVLHADAD 747
            I + T  G   +  +  I     ++  G    +L   D        V++   + H    
Sbjct: 565 KICIFTDTGVMHQIKVLDIPAGKYKD-KGTPIDNLGNYDSSDEAIIAVLAAEAMTHDSLF 623

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           +      +K +S     ++  T   T L +  ++      +    L   +  IL  +++G
Sbjct: 624 FATEQGMLKIVSGTEFQVTKRTVSATKLSDGDALLSVKPLKTEGGLIKPDMVILE-TKEG 682

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL---------VSD 858
              R S  +     +   G+R   ++K                D I+L         ++ 
Sbjct: 683 VFLRFSLEEVPEKKKGAVGVRGIKLNK----------------DDILLHTYLMEADGITS 726

Query: 859 ---KGTLIRVPVNEIRIASRATKGVVI 882
              KG   R+  N++++A R TKG  I
Sbjct: 727 MDYKGK--RLDFNKLKLAKRDTKGSKI 751


>gi|148272833|ref|YP_001222394.1| DNA topoisomerase IV subunit A [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830763|emb|CAN01703.1| putative topoisomerase II subunit A [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 848

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 288/852 (33%), Positives = 419/852 (49%), Gaps = 88/852 (10%)

Query: 1   MT-EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+     ++ +E  + I  V ++ EM+NS+L YA +VI  RA+PD RDGLKPV RRIL+ 
Sbjct: 1   MSPSTTNTTPDEPAERIEDVDVSTEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  ++ +VK AR++GEVMGK HPHG++AIYDA+ RMAQ ++LR+ LI+G GNFGS
Sbjct: 61  MSEMGLRPDRGHVKSARVTGEVMGKLHPHGDSAIYDAMVRMAQSFTLRVPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  +++ L +D VDF PNYD +F +P VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALAMVEGLDEDVVDFVPNYDNAFMQPAVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+  HNL EVV     +ID+PD  LD LM  + GPD PTG  I+G +G+K+
Sbjct: 180 SGIAVGMATNMVPHNLIEVVGAARHLIDHPDASLDDLMSFVPGPDLPTGGTIIGLSGVKD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R    +E  +  +  +VVTE+PY V    ++EKI + V+ K++  I ++
Sbjct: 240 AYLTGRGSFKTRARVSVESLTPRKSGLVVTELPYLVGPEKVIEKIKDGVQNKKLSGITNV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR  G R+VIE+K G + + +L QLYRYT L+  FSVN VAL    P+   L  +L
Sbjct: 300 TDLTDRTHGLRLVIEIKTGFNPEAVLEQLYRYTPLEDGFSVNNVALVDGSPQTLGLKELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +VA R EVV RRT+Y L + ++R H+++GL IA+ ++DEV+++IR S + E AR  LM
Sbjct: 360 QVYVAHRLEVVTRRTRYRLARRQERLHLVLGLLIAILDIDEVIQVIRGSDDTEQARARLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LS +Q   ILELRL RLT   R ++  E +
Sbjct: 420 --------------------------DVFDLSTLQADYILELRLRRLTRFSRIELEEERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI----- 533
            L  EI E   IL+   RL  ++  EL  V D   TPRRT + E    +           
Sbjct: 454 RLQAEIAELEAILADPRRLRALVSTELQEVADRFGTPRRTLLTEAAPSVAGASSRRAAPV 513

Query: 534 ---VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                    V +S  G   RV L         G     V     D V      ++ T + 
Sbjct: 514 LEIADVPCRVLLSTTGRAVRVDLPT----DAPGTPLQTVRRSSHDAVLTAIETTSRTRIG 569

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G +       LP+    +        +  +               +   +  +  
Sbjct: 570 AITNTGRLITMTPVDLPVVPVASVQLGAGVRIR-DYLGLADRKERVVALVALGTDEAIAL 628

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T+ G V+R   S          IA  L   DE++      + ++++  T   Q + FP 
Sbjct: 629 GTRQGVVKRIAPSALPAKPEFEVIA--LKKGDEVVGARQGAETDELVFVTSEAQLLHFPA 686

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            ++R   G  + GV G++L  G +V+  + V    A+          ++           
Sbjct: 687 VSVRP-QGIQAGGVAGVNLGAGARVLFFSSVAPEGAEVVTISASSATIAGVDP------- 738

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                               G  K ++  DF    R+  G+RA 
Sbjct: 739 ------------------------------------GRAKVSAFGDFPRKGRATGGVRAH 762

Query: 831 DVSKINEIGALV 842
              K  +  AL 
Sbjct: 763 AYLKGEDHLALA 774



 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 797 EQFILTVSEKGFGKRTSSY------DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++ I   + +G  KR +        +F         + A       +   +V      + 
Sbjct: 623 DEAIALGTRQGVVKRIAPSALPAKPEFE--------VIALK-----KGDEVVGARQGAET 669

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           D+++ V+ +  L+  P   +R       GV   +     RV+    +      
Sbjct: 670 DELVFVTSEAQLLHFPAVSVRPQGIQAGGVAGVNLGAGARVLFFSSVAPEGAE 722


>gi|291546805|emb|CBL19913.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus sp. SR1/5]
          Length = 748

 Score =  596 bits (1536), Expect = e-168,   Method: Composition-based stats.
 Identities = 244/730 (33%), Positives = 387/730 (53%), Gaps = 27/730 (3%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             ++  I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++
Sbjct: 2   NTKQDNIIRTDYAEIMQKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDR 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y KCARI G+ MGKYHPHG+++IYDAL  MAQ++     L++G GNFGS++GD  AA R
Sbjct: 62  PYRKCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGRTLVDGHGNFGSIEGDGAAAMR 121

Query: 130 YTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           YTE RL+K    + L+DL K+ VDF PN+D + +EPVVL  R PN+LVNG  GIAVGMAT
Sbjct: 122 YTEARLEKLTQEVFLEDLDKNVVDFMPNFDETEKEPVVLPVRIPNLLVNGADGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           +IP HNLGEVVD   A + N DI    LM  ++GPDFPTG +++ +  +   Y +G G +
Sbjct: 182 SIPPHNLGEVVDAVKAYMKNNDISTRGLMRYLKGPDFPTGGIVVNKDDLVKIYESGTGKL 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDR 305
            IRG   IEK  G R+Q+V+TEIPY +  A + +    IA LV  K+  DI D+ ++S +
Sbjct: 242 RIRGRVEIEKLKGGRQQLVITEIPYTMIGANIGKFLNDIATLVETKKTTDIVDISNQSSK 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+V+ELKR A  + + N LY+ T L+  F VNM+A+   +PE   L  I+   V F 
Sbjct: 302 EGIRIVLELKRDADVENLTNMLYKKTRLEDTFGVNMLAVADGRPETLGLKQIIAHHVDFV 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV  R+   LL K +++  +  GL  A   +D ++ I+R S + +  ++ L        
Sbjct: 362 FEVNSRKYTTLLAKEQEKREIQEGLIKACDVIDLIIEILRGSKSRDQVKKCLTDGITEGI 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             K        +  +  +  T+  +E Q  AIL++RL +L GL  D +  E       I 
Sbjct: 422 KFK--------TKTSEKAAKTLKFTEKQAAAILDMRLYKLIGLEIDALMKEHEETMKNIA 473

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              DIL++   +  +I  EL  +K E  + R+T I      + +E  +   ++   +   
Sbjct: 474 AYEDILNNYDSMAAVIMGELDQIKKEYGSKRKTSIENAEEAVYEEKKMEETEVCFLMDRF 533

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY++ +  + Y   +                   +F       +  F+  G ++  K   
Sbjct: 534 GYMRLIDKNAYERNKDAAH----------AESRYVFTCMNTDKICIFTDTGKLHTVKAED 583

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P+   + +G    N   L   +  +  + +    S      V+F T++G  +  K  +F
Sbjct: 584 IPLVRFRDKGVPADN---LGNYDSTSEQILYVAPLSQVAASTVLFVTENGMCKLVKGDEF 640

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                   ++ KL   D ++ V    + + ++  ++ G  +R   + I     +N++GVR
Sbjct: 641 RASK-RTIVSTKLAEDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEI-SVTKKNAMGVR 698

Query: 726 GISLAKGDQV 735
           G+ L   D++
Sbjct: 699 GMKLTGEDRI 708



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 74/257 (28%), Gaps = 62/257 (24%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E++            + G +R    + + +   +           E   V TC   +
Sbjct: 514 AVYEEKKMEETEVCFLMDRFGYMRLIDKNAYERNKDAAHA--------ESRYVFTCMNTD 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            I + T  G+        I +   R+  GV   +L   D                     
Sbjct: 566 KICIFTDTGKLHTVKAEDIPLVRFRD-KGVPADNLGNYD--------------------- 603

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                                  ++    +L V+E G  K    
Sbjct: 604 --------------------------STSEQILYVAPLSQVAASTVLFVTENGMCKLVKG 637

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            +FR S R          +K+ E   LV V   ++ DQ++  S+KG  +R+   EI +  
Sbjct: 638 DEFRASKR------TIVSTKLAEDDRLVFVGAADEMDQVVFQSEKGYFLRIMKTEISVTK 691

Query: 875 RATKGVVIFSTAKDERV 891
           +   GV       ++R+
Sbjct: 692 KNAMGVRGMKLTGEDRI 708


>gi|87301556|ref|ZP_01084396.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
 gi|87283773|gb|EAQ75727.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 5701]
          Length = 820

 Score =  595 bits (1534), Expect = e-168,   Method: Composition-based stats.
 Identities = 271/754 (35%), Positives = 400/754 (53%), Gaps = 54/754 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLDEIGSDTVDFTSNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVV+  +A+I  P++  + L+E++ GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVEALIALIRKPELSDEKLLELVPGPDFPTGGEVLVGSGVRDTYLQGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+         R  +V+TE+PYQ++KA  +EK+A+ V + +I  IAD+RDESDR+
Sbjct: 243 GIAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLADQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIEL+R   A  +L  L R TSLQS F   ++AL   +P++ +L  +L  F+ +RE
Sbjct: 303 GMRVVIELRRDTEASKVLTDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLNHFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L +  DR  V+ GL  A+  L EV+  I+                     
Sbjct: 363 HTLIRRTSHALRRTEDRLEVVEGLIRALDALPEVIERIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                   D +S          LSE Q  A+L + L RLT L +D +R E   L  E + 
Sbjct: 402 -----AASDAASARASLQVHFDLSERQADAVLAMPLRRLTSLEQDGLRKESVELMEERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV------- 539
              +L  R+ LL  +  EL ++K    TPRRTR+V G  D+  +                
Sbjct: 457 LRHLLDDRAALLESMVAELKALKKRYSTPRRTRLVAGGDDLVAQRAAAVRPNTELQRQQA 516

Query: 540 -VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM-----RDEDFVTDLFIVSTHTSVLFFS 593
              +   G +      V R       GR  +               +  V+   S+L FS
Sbjct: 517 LEALPGDGRLLIQADGVVRIVSPQALGRLHLDEAAPLGEHPSPARLILPVAEKPSLLAFS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V   + W      P +  K L   L  +    +  +              +   + 
Sbjct: 577 ASGRVAMLR-WEFAAQQPGSLEKFLPEGLLGDPIVEVLPL-------PQKPTGTLGLLSS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-A 712
            G  +R  +  F +++      +KL    ++  V  CT   D+++ +  G+ +R  ++  
Sbjct: 629 DGRFKRLPIEAFSELSGRAATVLKLKDGVQLRRVVPCTDGQDLVVASTTGRLLRLAVNDD 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                G+ + G   + L  G+ V+  A V     
Sbjct: 689 TLPLMGKAAQGPMLLRLLPGESVVGAACVDPGSD 722



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 9/167 (5%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I+  A+            ++  R   +              + G+   E     +     
Sbjct: 563 ILPVAEKPSLLAFSASGRVAMLRWEFAAQQPGSLEKFLPEGLLGDPIVEVLPLPQKPTGT 622

Query: 800 ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +  +S  G  KR     F  +S R+        +    ++  +V   P  D   +++ S 
Sbjct: 623 LGLLSSDGRFKRLPIEAFSELSGRAA---TVLKLKDGVQLRRVV---PCTDGQDLVVAST 676

Query: 859 KGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            G L+R+ VN+  + +  +A +G ++      E VV    +     V
Sbjct: 677 TGRLLRLAVNDDTLPLMGKAAQGPMLLRLLPGESVVGAACVDPGSDV 723



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 57/167 (34%), Gaps = 9/167 (5%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD ++    VL         +  +      +RL      E++          +  + R  
Sbjct: 606 GDPIVE---VLPLPQKPTGTLGLLSSDGRFKRLPIEAFSELSGRAATVLKLKDGVQLRRV 662

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                 Q ++  S  G   R +  D    +  ++ +G     +       ++V    V+ 
Sbjct: 663 VPCTDGQDLVVASTTGRLLRLAVNDDTLPLMGKAAQGPMLLRLLPGE---SVVGAACVDP 719

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVE 895
              ++LVS    L R+ V  +R   R   G +     + ++ +V ++
Sbjct: 720 GSDVLLVSRHSQLKRLEVEGLRRCERGDLGQIGLRFRQREDELVDLQ 766


>gi|310287731|ref|YP_003938989.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
 gi|309251667|gb|ADO53415.1| DNA gyrase subunit A [Bifidobacterium bifidum S17]
          Length = 890

 Score =  595 bits (1534), Expect = e-167,   Method: Composition-based stats.
 Identities = 266/896 (29%), Positives = 413/896 (46%), Gaps = 121/896 (13%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H      + ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   TTHQAYDPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G +I+GR GI+ AY
Sbjct: 185 IAVGMATNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIGRNGIRGAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG++  R ++H E  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D
Sbjct: 245 ETGRGTLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAID 304

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +D   G R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +L+ 
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPHTMGLKEMLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+  L+  
Sbjct: 365 WIDHRRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIA- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L +VQ + IL+LRL RLT + R ++  E + L
Sbjct: 424 -------------------------VFDLDDVQAQYILDLRLRRLTRMSRIELEAERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------ 534
              I+E   IL+S   L  ++  E+     E  TPRRT +++   D              
Sbjct: 459 KRRIEELERILASAQELDRVVVDEMDQAVAEYGTPRRTVLLDEAEDGTLTPVTPHGDDSV 518

Query: 535 -------------------------------------------REDMVVTVSHLGYVKRV 551
                                                       E   V +S  G + R 
Sbjct: 519 NAAAMKAAAAATTLSSAEADVTAAAAARKAGEDAAAVAALQIDDEPCTVMLSASGTIARS 578

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             +   A               +D +  +F  +T +S    +S G +    V  LP  + 
Sbjct: 579 TPAALDAWESRSTSDERTK---DDHIVSIFRTTTRSSYGLVTSAGRLVLAHVVELPALAA 635

Query: 612 QAR-----GKALINILSLNQGERITTIMPF-------PEDESSWNNLYVVFATKHGNVRR 659
             +     G     ++ + +                   D+       +   T+ G V+R
Sbjct: 636 SPQTNVAGGIPADELIGMTESTDPIPGEHVVAAIPMDQRDDDGPTPAPLAIGTRAGVVKR 695

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   +       + L   D +L       E+ ++        + F    +R   GR
Sbjct: 696 WNREAPTTM--DSWSVIDLKDGDSVLFAADAADEDRLVFIASDSSLLTFDAGNVRP-QGR 752

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI LA+G   I+  +V      +          SA   ++     +  +L    
Sbjct: 753 TAGGMAGIRLAEGCTAITFNVVPAGKIAWTYEEGDNGMFSASGAVVLTVAGDKDALPG-- 810

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +E G  K T    +    R   G+R+    K 
Sbjct: 811 ------------------------TENGAAKVTPLEMYPTKGRGTGGVRSQRFLKG 842


>gi|194476877|ref|YP_002049056.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
 gi|171191884|gb|ACB42846.1| DNA gyrase/topoisomerase IV, subunit A [Paulinella chromatophora]
          Length = 818

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 284/904 (31%), Positives = 450/904 (49%), Gaps = 122/904 (13%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I S+++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++ +  N  Y 
Sbjct: 3   EERIQSIALHHEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELDLTPNHAYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+AQ+++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLAQNFANRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A   LL ++G  TV+F PN+D S  EP+VL A+ P +L+NG  GIAVGMAT++P
Sbjct: 123 IRLALIASDGLLSEIGSSTVEFTPNFDNSQHEPIVLPAQLPFLLLNGCSGIAVGMATSVP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+V+  +A+I  P++    L+++I GPDFPTG  +L   GI+  Y  GRGSI +R
Sbjct: 183 PHNLGEIVNALIAIIQKPNLSDKTLLDLIPGPDFPTGGEVLINKGIQETYLEGRGSITMR 242

Query: 252 GVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  +V+TE+PYQ+NKA  +EK+AE V   +I+ I+D+RDESDR 
Sbjct: 243 GVAHIEEVRLSKGRHRRFAVVITELPYQLNKAGWIEKLAEKVNYGKIIGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++    + +L+ L R TS ++ FS  ++AL   +P +  L  +L+ F+++RE
Sbjct: 303 GTRLVVELRKDTEPEKVLSILERRTSFKTNFSSIILALVDGQPVQLNLRQLLEHFLSYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT+Y L +  +R  V+ GL  A+ +L  +V II+                     
Sbjct: 363 ITIIRRTQYTLKRKENRLEVVEGLLRALFSLTRIVEIIQA-------------------- 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                 L + S+  +       LS++Q+ AIL + L RLT   ++++  E NSL ++ K+
Sbjct: 403 ------LTESSNAKLNLRVHFDLSDIQSDAILNMPLRRLTSFEKENLHIEANSLRLDRKK 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--------MEDEDCIVREDM 538
             ++L  R  LL  I  EL ++K    TPRRTR+ E   +         + E  +     
Sbjct: 457 LNNLLKKREALLSTIMNELKNLKKRFATPRRTRLREESFNLLNSSANVSQQEQILENLPK 516

Query: 539 V--VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
              + +SH G V+ +     +         +            L  +S H S+L FSS G
Sbjct: 517 TNQLIISHDGQVQIIAP---QLINHLHLEATLTSGHHPSPPQLLLPISQHPSILIFSSSG 573

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V   + W      P+   + L N L  +Q  +I  +        S +++ ++  +  G+
Sbjct: 574 RVGLLR-WEFAEQQPRNISEFLPNSLLGDQVIQILPLNLEANLIPSVSSIGLL--SSDGH 630

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRV 715
            +R  + +F  ++      ++L     +L V  C +  ++++ + LG+ ++  I + I  
Sbjct: 631 FKRLPIEEFHDLSGRAVTILRLKEGVSLLRVVECFENEELIIGSSLGRLLKIRIQTNILP 690

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R + G   + L  G+ VI    +    +                             
Sbjct: 691 MMKRTAQGTLLLKLLPGETVIGATCIKEEGS----------------------------- 721

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   ++  + KG  KR +S   R   R   G         
Sbjct: 722 ------------------------LMLATTKGQIKRLNSSSLRSFERCQLGQIGLRF--R 755

Query: 836 NEIGALVAVFPVNDNDQII---LVSDKGTLIRVPV-----NEIRIASRATKGVVIFSTAK 887
           +   ALV +       +++   L    G   R+ V      +I    +           K
Sbjct: 756 DSDDALVDLQSAK--IEVMSGQL--SSGRNFRLRVADWEAEDINGMGKK------IELLK 805

Query: 888 DERV 891
            E++
Sbjct: 806 GEQL 809



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 9/104 (8%)

Query: 800 ILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           I  +S  G  KR    +F  +S R+   +    + +   +  +V  F   +N+++I+ S 
Sbjct: 622 IGLLSSDGHFKRLPIEEFHDLSGRA---VTILRLKEGVSLLRVVECF---ENEELIIGSS 675

Query: 859 KGTL--IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            G L  IR+  N + +  R  +G ++      E V+    I+E 
Sbjct: 676 LGRLLKIRIQTNILPMMKRTAQGTLLLKLLPGETVIGATCIKEE 719


>gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
 gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC
           25986]
          Length = 575

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/515 (47%), Positives = 341/515 (66%), Gaps = 26/515 (5%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM+ S++ Y+++VI  RA+PD+RDGLKPVHRRIL+ M + G+  N+ + K A   GEV+G
Sbjct: 77  EMKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIG 136

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+Y+A+ R+AQ +S+R  LI+G GNFG++DGD  AA RYTE RL K A  LL
Sbjct: 137 KYHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELL 196

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL KDTVD++PNYD S  EPV L AR+PN+LVNG  GIAVGMATNI  HNL E ++   
Sbjct: 197 RDLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVGMATNIAPHNLAEAIEATC 256

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
            +IDNPD  +D LM+I+ GPDFPTGA+I+G  GIK +Y TGRGSI +R  +H+E T   R
Sbjct: 257 YLIDNPDATVDELMQIMPGPDFPTGAIIMGSAGIKQSYETGRGSITVRAKAHVESTKTGR 316

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            ++V TEIPY VNK  + EKIA+LV +KRI  I+D+RDES+++G R+VIELK+G    V+
Sbjct: 317 SRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESNQKGIRLVIELKKGVIPQVV 376

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+YTSLQ+ F  N +AL    P+  +L  +L+ ++  + +VV RRT++ L KA+ R
Sbjct: 377 LNNLYKYTSLQTTFGANNLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQAR 436

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L G  +A+ ++DEV+ IIR S     A   L++R                       
Sbjct: 437 AHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIER----------------------- 473

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 +  QT AILE++L RLTGL RD I+ EL+ L   I    D+L+   ++LG+IK+
Sbjct: 474 ---FGFTPEQTTAILEMKLRRLTGLERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKE 530

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
           E+  +  +    RRT I +   D++ ED I  E+ 
Sbjct: 531 EMREISKKFGDKRRTEISQVEKDLDVEDLIADEEY 565


>gi|320531395|ref|ZP_08032363.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136396|gb|EFW28376.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 849

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 273/902 (30%), Positives = 414/902 (45%), Gaps = 142/902 (15%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  L  DL ++TVDF PNYD +  EP VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDENTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEASLEDLMAFVPGPDLPAGGMIVGLDGIRE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+
Sbjct: 240 AYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKIITRIKEAVGSKKLQGITDV 299

Query: 300 RDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +D R G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L
Sbjct: 300 ADLTDRRHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             FV  R  VV RRT++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LM
Sbjct: 360 DVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           Q                             L+E Q   ILEL+L RLT     ++  E +
Sbjct: 420 Q--------------------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT-------------------- 518
            L  EI+    IL+    L  ++ +EL  V ++  TPRRT                    
Sbjct: 454 ELAREIEALEAILADDVLLRRVVSRELADVAEQFGTPRRTVLLEASGEPVTSSAGSAATP 513

Query: 519 -------------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
                               +            +  +   V +S  G V R+P +   A+
Sbjct: 514 DDASTASGGGEKRTGASAQPMTLMPSASPVPLTVPDDPCRVVLSATGLVARIPGAEPVAR 573

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK--- 616
                       +  D +T     +    +   +  G +    V                
Sbjct: 574 TG--------RRQPHDALTSQVSATARGRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLA 625

Query: 617 ---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
               +  ++ +   E++  ++P        +N  +V AT  G ++R K  D    N    
Sbjct: 626 GATQVRQLVDIEPEEKVVGLVPVGS----ADNPPIVLATAEGVIKRVKPGD-EPRNAESW 680

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
             + L   D ++   T    + + + T   Q +RF  + +R   GR + G+ GISL +G 
Sbjct: 681 EVISLSEGDRVVFAGTAADTDFLTMVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGA 739

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +VI+ A V          +       +                                 
Sbjct: 740 RVIAGAAVPEELLAEAVVVTVTGSEGSLPG------------------------------ 769

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                     +  G  K T    +    R+  G+R+    +                D++
Sbjct: 770 ----------TGGGSVKVTPLDRYPAKGRATGGVRSHRFLRG--------------EDEL 805

Query: 854 IL 855
           ++
Sbjct: 806 MV 807



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 76/242 (31%), Gaps = 34/242 (14%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR-------------NSV 722
           M L      + +        + + +  G   R P +      GR              + 
Sbjct: 534 MTLMPSASPVPLTVPDDPCRV-VLSATGLVARIPGAEPVARTGRRQPHDALTSQVSATAR 592

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G  G     G +++ + +V   +    E    +   +  R+L+  + EE           
Sbjct: 593 GRIGAVTDTG-RLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVG-- 649

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                            I+  + +G  KR    D     R+ +      +S+ +    +V
Sbjct: 650 -----------SADNPPIVLATAEGVIKRVKPGDEP---RNAESWEVISLSEGDR---VV 692

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                 D D + +V+    L+R    ++R   R   G+   S  +  RV++   + E  +
Sbjct: 693 FAGTAADTDFLTMVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPEELL 752

Query: 903 VD 904
            +
Sbjct: 753 AE 754



 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 83/277 (29%), Gaps = 36/277 (12%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +      +        D + S  + T    I   T  
Sbjct: 548 PDDPCRVVLSATGLVARIPGAEPVARTGRRQ------PHDALTSQVSATARGRIGAVTDT 601

Query: 703 GQCVRFPI---SAIRVFAGR----NSVGVR-GISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   +   + +    G      +  VR  + +   ++V+ +  V  AD         
Sbjct: 602 GRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSAD----NPPIV 657

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +       + +    E   +   +                    F+  V+      R  +
Sbjct: 658 LATAEGVIKRVKPGDEPRNAESWEVISLSEGDRVVFAGTAADTDFLTMVTSDAQLLRFQA 717

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVS-----------DKGT 861
              R   R   G+    + +      ++A   V +    + ++V+             G+
Sbjct: 718 AKVRPQGRGAGGMAGISLHEG---ARVIAGAAVPEELLAEAVVVTVTGSEGSLPGTGGGS 774

Query: 862 LIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERI 897
           +   P++      RAT GV        ++ ++ V  +
Sbjct: 775 VKVTPLDRYPAKGRATGGVRSHRFLRGEDELM-VAWV 810


>gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
 gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803]
          Length = 821

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 276/818 (33%), Positives = 424/818 (51%), Gaps = 51/818 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+ +I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVRKPDLSDDKLLSLIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R TSLQS F   M+AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRRLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L KA DR  V+ GL  A+ +L  V+ +I+                     
Sbjct: 363 LTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                +  D ++        + LSE Q  A+L + L RLTGL R+ +R E   L  E + 
Sbjct: 402 -----EAQDAAAARASLMVHLDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + QEL  +K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLDNRDQLLDALVQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPN-AELQRRQ 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDED--------------FVTDLFIVSTHTSVLFF 592
            ++ +P       +  G+ +                           +  +     +L  
Sbjct: 516 ALEALPPDSRILIQDDGQVKVISPQLMGRLHLNEPTALGDEPSPARIILPIKPVAKLLAV 575

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G V     W      P +  + L   L  +    +  +     D ++     +   +
Sbjct: 576 TASGRVA-LIRWEFAGQQPGSLERFLPTALQGDPVVSVLQLPDAEADSNAAAVSSLGLLS 634

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G  +R  + + + ++      +KL    E+ +   C +   + L + LG+ +  P+S 
Sbjct: 635 SDGRFKRLAMQELLDLSGRAASVVKLKEGIELKTAVICQEGGALSLISDLGRVLHLPVSE 694

Query: 713 IR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI--SGDT 769
                 G+ + G   + L   + +I+         D          + +  R    +   
Sbjct: 695 ANLPLMGKLAQGPVTMRLLPEESLIAAVATNPDQQDPLLLFSRQGRIKSLARDAVRACQR 754

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            ++  +      +G   E+R          +  V+  G
Sbjct: 755 GDLGVIGWQPEQDGRDPEDRLCAACTGSGLVGVVTSSG 792


>gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 782

 Score =  595 bits (1533), Expect = e-167,   Method: Composition-based stats.
 Identities = 263/740 (35%), Positives = 401/740 (54%), Gaps = 39/740 (5%)

Query: 1   MTEHIISSDEEEEK--GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I   + E     G  +  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MNDTIDDPNMEAPGVGGEVAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMRELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  LL+ L +D VDFR NYDG+ +EPVVL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRDNYDGTLREPVVLPATFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMATNIP HN+ E+ D C+ +I  PD   D L+  + GPDFPTG  ++     I
Sbjct: 181 ASGIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPESI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    IE     + QIVVTEIPYQV K+ ++EK+AEL++ K+I  + 
Sbjct: 241 AQAYRTGRGSFRLRCKYEIEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQTKKIPILG 300

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLI 355
           D+RDES     R+++E + +    +V++N LYR + L+  FS+NM   ++G  P+  ++ 
Sbjct: 301 DVRDESA-DDIRLILEPRSKNVDPEVLMNMLYRNSDLELRFSLNMNVLIDGVTPKVCSMK 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+AF+  R+EV++RR+++ + K   R  VL G  +A  NLD V+ IIR+  +P   + 
Sbjct: 360 EVLRAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDP---KA 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+ +W    ++       ++ Y     G   LSEVQ  AIL +RL  L  L   ++  
Sbjct: 417 ALMRENWGIDHVRA----TSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVR 472

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDME 528
           E ++L  E     D+L+        I ++L   K +         RRTR  E   + ++ 
Sbjct: 473 ERDALMEERAGLEDLLADEGLQWASIAEQLKETKKKFGKDYEGGARRTRFAEAGAVEEVP 532

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  I RE + V  S +G++        RA          +  +D D    +F   T   
Sbjct: 533 LEAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDR 584

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F+S G VY      LP G  +  G+ L  ++ L    +I  I+             +
Sbjct: 585 LLIFASNGRVYTVSAANLPGG--RGMGEPLRLMVDLPNEAQIVDIL------IHKPGRKL 636

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN       + +   R+GK  + +   +  +  +     + + + ++ G+ + F
Sbjct: 637 LVASDAGNGFIVPEDEVLAQTRNGKQVLNVKDDERAVICKPVAG-DHVAVVSQNGKFLVF 695

Query: 709 PISAIRVFAGRNSVGVRGIS 728
           P+S +         GVR   
Sbjct: 696 PVSELPEMT--RGKGVRLQK 713



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 12/173 (6%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR   G   +  R +    GD       + HA+      I             +      
Sbjct: 552 IRAMTGHIDL-NRELKFKDGD---GPRFIFHAETTDRLLIFASNGRVYTVSAANLPGGRG 607

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQF-ILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                   V+     +    L  K    +L  S+ G G      +     R+GK +    
Sbjct: 608 MGEPLRLMVDLPNEAQIVDILIHKPGRKLLVASDAGNGFIVPEDEVLAQTRNGKQVLNVK 667

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             +       V   PV   D + +VS  G  +  PV+E+   +R  KGV +  
Sbjct: 668 DDERA-----VICKPVA-GDHVAVVSQNGKFLVFPVSELPEMTR-GKGVRLQK 713


>gi|303286821|ref|XP_003062700.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226456217|gb|EEH53519.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1082

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 275/795 (34%), Positives = 417/795 (52%), Gaps = 97/795 (12%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++   + I    ++ E   SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G++ 
Sbjct: 54  DEDATNERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDS 113

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K + KCAR+ GEV+GK+HPHG+ ++YDAL RMAQD+S+   L++G GNFGS+D DPPAA
Sbjct: 114 KKPFKKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPPAA 173

Query: 128 ERYTECRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL+  A  + L D+  D VDF   +DGS  EP VL AR PN+L+NG  GIAVGM
Sbjct: 174 MRYTECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGM 233

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPD-IDLDALMEIIRGPDFPTGAVILGR---TGIKNAYA 242
           AT+IP HNL EV D       +PD   LD L++++  PDFPT  +I+      G ++ YA
Sbjct: 234 ATSIPPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYA 293

Query: 243 TGRGSIVIRGVSHIEKTSGD--------REQIVVTEIPYQ-----------------VNK 277
           TG+GS+ +RG +HIE+            +  +++T IPYQ                  NK
Sbjct: 294 TGKGSVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNK 353

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A++  +IA+LV  +++  + D+RDESDR G RVV+E++R    + +  QLY  T LQ   
Sbjct: 354 ASLCGQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSGDPNFVREQLYTRTRLQVRV 413

Query: 338 SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           SVN+V L G +P+  TL+ I++ F+ FR E + RR ++ L+KA  R HV+ G     A  
Sbjct: 414 SVNLVGLIGREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAP 473

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D VV  IR + +   A++ L +                             LS+ Q+ A+
Sbjct: 474 DAVVAAIRAAKDGPEAQKTLQE-------------------------APFSLSKEQSEAV 508

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L + L RLTGL  D +R E   L  ++++   +LS R+ ++  +  E   ++D+    R+
Sbjct: 509 LAMPLRRLTGLEHDKLRAEEADLTAKVEQLNALLSDRALVIAAVASEAKELRDKYGVERK 568

Query: 518 TRIVEGLLDMEDEDCIV---------------------------------------REDM 538
           T I      +  E                                             D 
Sbjct: 569 TLIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADN 628

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           ++ ++  GY+KR+   ++  Q +G  G+ G  MR  D VT +   +   +VLFF+  G V
Sbjct: 629 LIVMTGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRV 688

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN--LYVVFATKHGN 656
           Y  + + +P  S  A G     +L L +GE IT ++P        +N   ++V  T  G 
Sbjct: 689 YAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNVGEHLVMLTARGV 748

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++  +S+F  INR+GK A+ L   D +  VE     + I++    G  + F + +IR  
Sbjct: 749 VKKTPISEFANINRAGKRALGLQKGDRLKHVELVRDGDGIMVAGVDGMVLHFSMDSIRA- 807

Query: 717 AGRNSVGVRGISLAK 731
             R   GV+ +   +
Sbjct: 808 QSRIGSGVKAMKFRE 822



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 797  EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND------- 849
               +L V+ +G GKR S   FR   R G G +A  + + + + A+  +  V+        
Sbjct: 964  GAMVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMC-ITGVDPALREAGD 1022

Query: 850  ----NDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIR 898
                 +++I+ S  G L R  V E+R    R  KGV +      + V  +  + 
Sbjct: 1023 AECVAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLP 1076



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 83/249 (33%), Gaps = 56/249 (22%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR--DEILSVETCTQENDILLTTK 701
           +   ++  T  G ++R     F + N+          R  D++  V  C   + +L  T 
Sbjct: 625 DADNLIVMTGKGYIKRIDPKIFSRQNKGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTD 684

Query: 702 LGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            G+        I   +   ++G    R + LA+G+ + +M  V  A              
Sbjct: 685 RGRVYAVRAYDI-PQSSTTALGTPFTRVLKLAEGETITAMLPVDTASRRGSNV------- 736

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                  + ++ ++ +G  K+T   +F 
Sbjct: 737 --------------------------------------GEHLVMLTARGVVKKTPISEFA 758

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
             NR+GK  RA  + K + +  +     V D D I++    G ++   ++ IR  SR   
Sbjct: 759 NINRAGK--RALGLQKGDRLKHV---ELVRDGDGIMVAGVDGMVLHFSMDSIRAQSRIGS 813

Query: 879 GVVIFSTAK 887
           GV      +
Sbjct: 814 GVKAMKFRE 822



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 15/110 (13%)

Query: 648  VVFATKHGNVRRNKLSDFIQINRSG--KIAMKLDSRDEILSVETCTQE------------ 693
            V+  T  G  +R  +  F Q  R G    A+ L+    + ++     +            
Sbjct: 967  VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026

Query: 694  -NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
              ++++ +  G   R+ ++ +R   GRN+ GV+ + L  GD V  + ++ 
Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLP 1076



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 54/162 (33%), Gaps = 7/162 (4%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++ H+ A     +   +  S        D   +   +  ++           +    +  
Sbjct: 570 LIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNL 629

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           I  ++ KG+ KR     F   N   KG       ++     +  V   N  D ++  +D+
Sbjct: 630 I-VMTGKGYIKRIDPKIFSRQN---KGTIGKKGGRMRGGDQVTKVTHCNGLDTVLFFTDR 685

Query: 860 GTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIR 898
           G +  V   +I  +S    G     +   A+ E + ++  + 
Sbjct: 686 GRVYAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPVD 727


>gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 465

 Score =  594 bits (1532), Expect = e-167,   Method: Composition-based stats.
 Identities = 248/459 (54%), Positives = 329/459 (71%), Gaps = 9/459 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++ 
Sbjct: 367 IFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLAR 464
             D +             DG  YL+E Q +AIL+LRL +
Sbjct: 427 AGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQK 465


>gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold
           That Plays A Critical Role In Gyrase Function
          Length = 525

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 263/515 (51%), Positives = 349/515 (67%), Gaps = 9/515 (1%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA +VI+GRA+PD+RDGLKPVHRR+L+    +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + R AQ +SLR  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L  DL K+TVDF  NYDG+ + P V   + PN+LVNG  GIAVG ATNIP HN
Sbjct: 127 LAKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ L E I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR A  +V+LN LY  T LQ  F +N VAL+  +P+   L  I+ AFV  R EVV RRT
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINXVALHHGQPKIXNLKDIIAAFVRHRREVVTRRT 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++   ++ 
Sbjct: 367 IFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLER 426

Query: 434 IDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I 
Sbjct: 427 AGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIA 486

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           E L IL S  RL  +I++EL  V+++    RRT I
Sbjct: 487 ELLRILGSADRLXEVIREELELVREQFGDKRRTEI 521


>gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1]
 gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1]
          Length = 748

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 239/741 (32%), Positives = 372/741 (50%), Gaps = 62/741 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     + E       +++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTKVAPPPEPE-----HEINLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + K AR+ G+V+G+YHPHG+ ++YDAL R+AQ +S+R  L++GQGNFG+V
Sbjct: 56  RQLKLDPGSGFKKSARVVGDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNV 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LL+ + +DTVDFR  YDG   EP VL   +P +L NG  
Sbjct: 116 DGDNAAAMRYTEARLTEVAAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAA 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +P+   + L+E ++GPDFPTG +I   R  +  
Sbjct: 176 GIAVGMATSIPPHNAAELCDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLE 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E+      QIVVTEIPYQV K+ ++EKIAEL++ +++  + D+
Sbjct: 236 AYETGRGGFRVRARWEQEELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDV 295

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGIL 358
           RDES  +   V++   R      ++  L+R T L++ F +NM  L+  +     +L G+L
Sbjct: 296 RDESAEEIRLVLVPKARTVDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVL 355

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +A++  R+ V+VRR+ + L+K   R  VL G   A  NLDEV+RIIR    P+ A     
Sbjct: 356 RAWLEHRKVVLVRRSNFRLDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPA----- 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E  
Sbjct: 411 ------------------------LIKKFKLTDNQAEAILNMRLRSLRKLEEMEIRGEHK 446

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGL--LDMEDED 531
            L  E K    ++ S  +    +  E+  VK           RRT+  +      +  E 
Sbjct: 447 ELSAEQKALKSLVKSEDKQWARVADEIKEVKALFGPKTALGARRTKFSDAPAIEYVPMEA 506

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E + V  S  G++        R  +      + +  ++ D    L    T   VL 
Sbjct: 507 MIEKEPVTVVCSKKGWI--------RTMKGHVGPDTEIKFKEGDAGRFLLHAETTDKVLL 558

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G  Y   V +LP G  +  G+ +  ++ L++           E         ++ A
Sbjct: 559 FATDGRFYTLDVTKLPGG--RGNGEPVRLMIDLDESHE------VVELFVHQPGRKLIVA 610

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  GN       + + + R+GK  + +  +DE ++         + +     + + FP+ 
Sbjct: 611 SHEGNGFIVPEDEVVAMRRAGKQVLNVTGKDEAIACAPVQGT-HVAVIGDNRKLLIFPVK 669

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR    A G
Sbjct: 670 EVNEMT--RGKGVRLQRYADG 688


>gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
 gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149]
          Length = 768

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 268/742 (36%), Positives = 395/742 (53%), Gaps = 38/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D+E      S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDQDDITDKEPAD--LSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +LD L ++ VDFR NYDG+  EPVVL A++PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLDGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HN+ E+ + C+ +I  PD   D L++ + GPDFPTG  ++     I  
Sbjct: 179 GIAVGMATNIPPHNIAELCEACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K+I  +AD+
Sbjct: 239 AYRTGKGGFRLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R++IE + R   ADV++  L+RY  L+  FS+NM   ++G  P+  ++  +
Sbjct: 299 RDESA-DDVRMIIEPRSRSVDADVLMGMLFRYCDLELRFSLNMNVLIDGVTPKVCSMKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R+EV+ RR+++ L K   R  VL G  IA  NLD V+ IIR+  +P   +  L
Sbjct: 358 LQAFLDHRQEVLQRRSQHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M   W     + L +              + L+EVQ  AIL +RL  L  L   ++  E 
Sbjct: 415 MAEDWGKDHPRALNE---ADYVPPVPTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQ 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME--DE 530
            +L  E     D+L S       I ++L + K +         RRT   E  +  +   E
Sbjct: 472 EALMAERAALEDLLESPELQWASITEQLRATKKQFGKDWDGGARRTTFSEATVIEDVPIE 531

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G+V        RA          +  +D D    +F   T   +L
Sbjct: 532 AMIDREPITVVCSEMGWV--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLL 583

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G  +  G+ L  ++ L     I TI+          N  ++ 
Sbjct: 584 VFGSNGRFYTVSASSLPGG--RGMGEPLRLMIDLPNEAEIITILT------HAPNRKLLV 635

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+      +D +   R+GK  + +   D    +    Q + + +  +  + + FP+
Sbjct: 636 ASSAGDGFVVPEADVVAQTRTGKQVLNVR-GDTRAMICKAVQGDTVAVVGENRKVLVFPV 694

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +    GR   GVR      G
Sbjct: 695 GELPEM-GRG-KGVRLQKYKDG 714


>gi|238924636|ref|YP_002938152.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
 gi|238876311|gb|ACR76018.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium rectale ATCC
           33656]
          Length = 751

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 251/737 (34%), Positives = 397/737 (53%), Gaps = 27/737 (3%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
               ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 138 AAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                 L DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN G
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   I
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEI 254

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           EK    ++++V+TEIPY +  A + +    +  LV  K   DI D+ ++S ++G R+V+E
Sbjct: 255 EKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLE 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ 
Sbjct: 315 LKKGADVEALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKY 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K     
Sbjct: 375 ETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKS---- 430

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +      +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  
Sbjct: 431 ----KASEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEH 486

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RS +  +I +EL + + E    RRT +      +  +  +   D+V+ +   GYVK V  
Sbjct: 487 RSSMAKVIMKELKAFRKEYARDRRTELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDT 546

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y   +             +     +  V     +  F++ G ++  KV  LP G  + 
Sbjct: 547 STYDRNKDTA----------DAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRD 596

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N+ + +  +     +    D        ++F TK   ++    ++F+       
Sbjct: 597 KGTPIDNVSNYDSSKEDIVFIAPLMDVEKHK---LIFGTKSAMIKLVDGAEFVVTR-KTS 652

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A KL   DE+L V+  ++   +++ +K    +R     I     + +VGVRG+ L + D
Sbjct: 653 QATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKK-KAAVGVRGMRLDRED 711

Query: 734 QVISMAIVLHADADYDE 750
           ++  + ++   D    E
Sbjct: 712 ELTDIYLLNDQDEKEVE 728



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/137 (10%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D        ++              + +++  ++  ++    K     +F ++       
Sbjct: 596 DKGTPIDNVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFVVTR------ 649

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           + +  +K+ +   L+ V  +++N  +++ S K   +R+    I    +A  GV      +
Sbjct: 650 KTSQATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDR 709

Query: 888 DERVVSVERIRESEIVD 904
           ++ +  +  + + +  +
Sbjct: 710 EDELTDIYLLNDQDEKE 726


>gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
 gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131]
          Length = 767

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 262/743 (35%), Positives = 393/743 (52%), Gaps = 41/743 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R+V+E + R    ++++  L+R + L+  FS+NM  L +G  P   +L  +
Sbjct: 299 RDESA-DDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRE 416
           L+AF+  R +V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P+ A   E
Sbjct: 358 LRAFLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAE 417

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
             +R +  ++ +          Y     G   LSEVQ  AIL +RL  L  L   ++  E
Sbjct: 418 SWERRFKRANSEK--------DYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAE 469

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED-- 529
            ++L  E  +   ++ S       I  +L  ++           RRT+  E     E   
Sbjct: 470 RDALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPL 529

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V  S +G++        RA +      +    +D D    LF   T   +
Sbjct: 530 EAMIEREPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRL 581

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L   S G  Y      LP G  +  G+ +  ++ L             +         ++
Sbjct: 582 LLVGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAE------IHDIFVWRPAEKLL 633

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G+       + +   R+GK  + +               + + +  +  + + FP
Sbjct: 634 LASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRG-DHVAVVGENRKLLVFP 692

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +S +   A     GVR      G
Sbjct: 693 VSELPEMA--KGKGVRLQKYKDG 713



 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + +L  S  G G    S +     R+GK + +                PV   D + +V 
Sbjct: 630 EKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRT-----AVCRPVR-GDHVAVVG 683

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +   L+  PV+E+   ++  KGV +      
Sbjct: 684 ENRKLLVFPVSELPEMAK-GKGVRLQKYKDG 713


>gi|326773486|ref|ZP_08232769.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
 gi|326636716|gb|EGE37619.1| DNA gyrase, A subunit [Actinomyces viscosus C505]
          Length = 847

 Score =  594 bits (1531), Expect = e-167,   Method: Composition-based stats.
 Identities = 272/900 (30%), Positives = 413/900 (45%), Gaps = 140/900 (15%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIVGLDGIRE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+
Sbjct: 240 AYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR  G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L
Sbjct: 300 ADLTDRKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + FV  R  VV RRT++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LM
Sbjct: 360 EVFVRHRLTVVTRRTRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLM 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           Q                             L+E Q   ILEL+L RLT     ++  E +
Sbjct: 420 Q--------------------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERD 453

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT-------------------- 518
            L  EI+    IL+    L  ++ +EL +V ++  TPRRT                    
Sbjct: 454 ELAREIEALEAILADDVLLRRVVSRELAAVAEQFGTPRRTVLLEASGERVTSSAAAETAD 513

Query: 519 -----------------RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
                             +            +  +   V +S  G V R   +   A+  
Sbjct: 514 DASASGRGAKRAGGAAQPMTLMPSASPVPLTVPDDPCRVLLSATGLVARTAGTEPVARTG 573

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK----- 616
           G +    +  +           +    +   +  G +    V                  
Sbjct: 574 GRQPHDALTSQ--------VATTARGRIGAVTDTGRLVLLDVVSTTEVPRTEGAPGLAGA 625

Query: 617 -ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
             +  ++ +   E++  ++P        +N  +V AT  G ++R K  D    N      
Sbjct: 626 TQVRQLVDIEPEEKVVGLVPVGS----ADNPPIVLATAEGVIKRVKPGD-EPRNAESWEV 680

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L   D ++  +T    + + L T   Q +RF  + +R   GR + G+ GISL +G +V
Sbjct: 681 ISLSEGDRVVFADTAADTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARV 739

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I+ A V          +       +                                   
Sbjct: 740 IAGAAVPEELLAEAVVVTVAGSEGSLPGTGGSS--------------------------- 772

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
                         K T    +    R+  G+R+    +                D++++
Sbjct: 773 -------------VKVTPLDRYPAKGRATGGVRSHRFLRG--------------EDELMV 805



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 20/185 (10%)

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G  G     G +++ + +V   +    E    +   +  R+L+  + EE        
Sbjct: 588 TARGRIGAVTDTG-RLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPV 646

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               I+  + +G  KR    D     R+ +      +S+ +   
Sbjct: 647 G-------------SADNPPIVLATAEGVIKRVKPGDEP---RNAESWEVISLSEGDR-- 688

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +V      D D + LV+    L+R    ++R   R   G+   S  +  RV++   + E
Sbjct: 689 -VVFADTAADTDFLALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPE 747

Query: 900 SEIVD 904
             + +
Sbjct: 748 ELLAE 752



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 84/277 (30%), Gaps = 36/277 (12%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +      +        D + S    T    I   T  
Sbjct: 546 PDDPCRVLLSATGLVARTAGTEPVARTGGRQ------PHDALTSQVATTARGRIGAVTDT 599

Query: 703 GQCVRFPI---SAIRVFAGR----NSVGVR-GISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   +   + +    G      +  VR  + +   ++V+ +  V  AD         
Sbjct: 600 GRLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPVGSAD----NPPIV 655

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
           +       + +    E   +   +             +      F+  V+      R  +
Sbjct: 656 LATAEGVIKRVKPGDEPRNAESWEVISLSEGDRVVFADTAADTDFLALVTSDAQLLRFQA 715

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVS----------DKGTL 862
              R   R   G+    + +      ++A   V +    + ++V+            G+ 
Sbjct: 716 AKVRPQGRGAGGMAGISLHEG---ARVIAGAAVPEELLAEAVVVTVAGSEGSLPGTGGSS 772

Query: 863 IR-VPVNEIRIASRATKGVVIFS-TAKDERVVSVERI 897
           ++  P++      RAT GV        ++ ++ V  +
Sbjct: 773 VKVTPLDRYPAKGRATGGVRSHRFLRGEDELM-VAWV 808


>gi|291529244|emb|CBK94830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale M104/1]
          Length = 751

 Score =  594 bits (1530), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/737 (33%), Positives = 397/737 (53%), Gaps = 27/737 (3%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
               ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 138 AAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                 L DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN G
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   I
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEI 254

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           EK    ++++V+TEIPY +  A + +    +  LV  K   DI D+ ++S ++G R+V+E
Sbjct: 255 EKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLE 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ 
Sbjct: 315 LKKGADVEALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKY 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K     
Sbjct: 375 ETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKS---- 430

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +      +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  
Sbjct: 431 ----KASEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEH 486

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RS +  +I +EL + + E    RRT +      +  +  +   D+V+ +   GYVK V  
Sbjct: 487 RSSMAKVIMKELKAFRKEYARDRRTELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDT 546

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y   +             +     +  V     +  F++ G ++  KV  LP G  + 
Sbjct: 547 STYDRNKDTA----------DAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRD 596

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N+ + +  +     +    D        ++F TK   ++    ++F+       
Sbjct: 597 KGTPIDNVSNYDSSKEDIVFIAPLMDVEKHK---LIFGTKSAMIKLVDGAEFVVTR-KTS 652

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A KL   DE+L V+  ++   +++ +K    +R     I     + +VGVRG+ L + D
Sbjct: 653 QATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKK-KAAVGVRGMRLDRED 711

Query: 734 QVISMAIVLHADADYDE 750
           ++  + ++   +    E
Sbjct: 712 ELTDIYLLNDQEEKEVE 728



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D        ++              + +++  ++  ++    K     +F ++       
Sbjct: 596 DKGTPIDNVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFVVTR------ 649

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           + +  +K+ +   L+ V  +++N  +++ S K   +R+    I    +A  GV      +
Sbjct: 650 KTSQATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDR 709

Query: 888 DERVVSVERIRESEIVD 904
           ++ +  +  + + E  +
Sbjct: 710 EDELTDIYLLNDQEEKE 726


>gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
 gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029]
          Length = 767

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/742 (35%), Positives = 389/742 (52%), Gaps = 39/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R+V+E + R    ++++  L+R + L+  FS+NM  L +G  P   +L  +
Sbjct: 299 RDESA-DDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDHRRDVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRA---- 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                  S  +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 414 ---LMAESWGRKFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAER 470

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED--E 530
           ++L  E  +   ++ S       I  +L  ++           RRT+  E     E   E
Sbjct: 471 DALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLE 530

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA +      +    +D D    LF   T   +L
Sbjct: 531 AMIEREPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLL 582

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  Y      LP G  +  G+ +  ++ L             +         ++ 
Sbjct: 583 LVGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAE------IHDIFVWRPAEKLLL 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + +   R+GK  + +               + + +  +  + + FP+
Sbjct: 635 ASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRG-DHVAVVGENRKLLVFPV 693

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +   A     GVR      G
Sbjct: 694 SELPEMA--KGKGVRLQKYKDG 713



 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + +L  S  G G    S +     R+GK + +                PV   D + +V 
Sbjct: 630 EKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRT-----AVCRPVR-GDHVAVVG 683

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +   L+  PV+E+   ++  KGV +      
Sbjct: 684 ENRKLLVFPVSELPEMAK-GKGVRLQKYKDG 713


>gi|229825734|ref|ZP_04451803.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
 gi|229790297|gb|EEP26411.1| hypothetical protein GCWU000182_01097 [Abiotrophia defectiva ATCC
           49176]
          Length = 745

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 263/768 (34%), Positives = 424/768 (55%), Gaps = 35/768 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ I     ++EM+NSY  Y+++VI+ RA+PD+RDGLKPV RRIL+ M ++G+  +K++ 
Sbjct: 4   EENIIIQDFSEEMKNSYRDYSVSVIISRALPDVRDGLKPVQRRILYAMNELGLAPDKQHR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYDAL  MA++WS+ + L++G GNFGS+DGD  AA RYTE
Sbjct: 64  KSARIVGDTMGKYHPHGDSSIYDALVHMAEEWSMSVPLVDGHGNFGSIDGDSAAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL  L ++ VDF PN+D   +EPV+L A+ P +L+NG  GIAVGMATNIP 
Sbjct: 124 ARLSKGAMNLLTGLDRNLVDFVPNFDEREKEPVILPAKLPFLLINGTTGIAVGMATNIPP 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN GE++ G +A++DNP++  + LM+ I GPDFPTG +I     I N Y  G G + +RG
Sbjct: 184 HNPGEIIKGAIALLDNPELTTEKLMKYIPGPDFPTGGIIANADEIANIYENGEGRLRVRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
              IE     ++ IV+TEIP+    NK+ ++E +  L+++K   +IAD+RDES     R+
Sbjct: 244 KYIIEDGEYGKKNIVITEIPFTSTGNKSRLVESLVNLMKDKVFDEIADVRDESSS-DVRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+E+K+G + + +LN +++ T L+  +SVNM+A+   +P+ F+L GIL+ F+ F EE+  
Sbjct: 303 VVEVKKGRNVENLLNGIFKKTPLEDTYSVNMLAVRDKQPKIFSLKGILEEFLGFEEELYT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   +LL KA+ RA V+ GL  AV  +D ++ ++R S + + A+  L+  +         
Sbjct: 363 KEYTHLLEKAKSRAEVVEGLIKAVDVIDLIIEVLRGSESIKQAKDCLVNGNIA------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            ++   S  +  +      +E Q  AIL + L+RL GL    +  E  +L   I+E   I
Sbjct: 416 -EIKFKSEASKKAAKEFDFTEPQADAILAMPLSRLIGLEVLKLSTEAENLKQNIEEYNKI 474

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS ++ L  +IK +L +     + PRRT ++     +  E+    ED+ V +   GY K 
Sbjct: 475 LSDKTELHRVIKTDLKANVKNFEKPRRTELLNEEKQVYVEEVK-EEDVYVLIDRFGYAKS 533

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V +S                           ++     +  F++ G +++ K   +P   
Sbjct: 534 VDVSSISKANEEALNEYPTK----------IMMKNTDRICIFTASGNMHQVKAKDIPKVR 583

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            + +G  + NI  + + E I         ES      V FAT+ G V+     +F     
Sbjct: 584 LRDKGTLVHNISKVGKEEIILYTSFAELFESM-----VFFATRKGFVKLVSGVEFDTNR- 637

Query: 671 SGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           S  +A KL+  DE+LSV         + +  + + TK    + + +  +     ++  GV
Sbjct: 638 SVMLATKLEEGDELLSVRVLSAAEILSHDLRVYMLTKKKIGLSYLLDEVVEMK-KSGRGV 696

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +GISLA+ D+V  +A+ + A  + +      K    + +  +   ++I
Sbjct: 697 KGISLAEDDEVKGVAVEISATTEVEFDGDSYKVAKFKLKKRAAKGDKI 744



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 14/120 (11%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----- 851
           E  +   + KGF K  S  +F  +NR          +K+ E   L++V  ++  +     
Sbjct: 613 ESMVFFATRKGFVKLVSGVEF-DTNR-----SVMLATKLEEGDELLSVRVLSAAEILSHD 666

Query: 852 -QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV--VSVERIRESEIVDEAES 908
            ++ +++ K   +   ++E+    ++ +GV   S A+D+ V  V+VE    +E+  + +S
Sbjct: 667 LRVYMLTKKKIGLSYLLDEVVEMKKSGRGVKGISLAEDDEVKGVAVEISATTEVEFDGDS 726


>gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
 gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1]
          Length = 767

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 261/742 (35%), Positives = 388/742 (52%), Gaps = 39/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  D L+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R+V+E + R    ++++  L+R + L+  FS+NM  L +G  P   +L  +
Sbjct: 299 RDESA-DDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R  V++RR+++ + K   R  VL GL +A  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDHRRNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRA---- 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                  S  +       +  Y     G   LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 414 ---LMAESWGRRFKRANSEKDYVGPGPGPGDLSEVQAEAILNMRLRSLRRLEEMELLAER 470

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED--E 530
           ++L  E  +   ++ S       I  +L  ++           RRT+  E     E   E
Sbjct: 471 DALLAERADLEALIGSERLQWDRIGHDLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLE 530

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA +      +    +D D    LF   T   +L
Sbjct: 531 AMIEREPITVICSQMGWI--------RAMKGHQPLDTEAKFKDGDGPRFLFHAETTDRLL 582

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  Y      LP G  +  G+ +  ++ L             +         ++ 
Sbjct: 583 LVGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAE------IHDIFVWRPAEKLLL 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + +   R+GK  + +               + + +  +  + + FP+
Sbjct: 635 ASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRG-DHVAVVGENRKLLVFPV 693

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +   A     GVR      G
Sbjct: 694 SELPEMA--KGKGVRLQKYKDG 713



 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + +L  S  G G    S +     R+GK + +                PV   D + +V 
Sbjct: 630 EKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRT-----AVCRPVR-GDHVAVVG 683

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +   L+  PV+E+   ++  KGV +      
Sbjct: 684 ENRKLLVFPVSELPEMAK-GKGVRLQKYKDG 713


>gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 514

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 262/534 (49%), Positives = 359/534 (67%), Gaps = 27/534 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 7   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 66

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 67  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 127 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 187 IPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 247 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 306

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+
Sbjct: 307 IVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYHYLEHQKVVI 366

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +         
Sbjct: 367 RRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------- 417

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +   
Sbjct: 418 -----------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKA 460

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTV 542
           IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T+
Sbjct: 461 ILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITL 514


>gi|225164035|ref|ZP_03726320.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801341|gb|EEG19652.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 788

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 311/774 (40%), Positives = 444/774 (57%), Gaps = 41/774 (5%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CA + GEV+  YHPHG++++YD L R+AQ W +R  LI+ QGNFGSVDGD  AA RYTEC
Sbjct: 1   CAGVVGEVLKNYHPHGDSSVYDTLVRLAQPWVMRYPLIDPQGNFGSVDGDSAAAYRYTEC 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL+  A  LL D+ +DTVDF PNY+ S  EP VL +  PN+L+NG  GIAVGM TNIP H
Sbjct: 61  RLRDIAEALLADIEEDTVDFAPNYNESTTEPTVLPSSLPNLLMNGSTGIAVGMTTNIPPH 120

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E++   VAV+DNP   LD L +II+GPDFPTG VI GR GI +   TGRG + +RG 
Sbjct: 121 NLHELITASVAVLDNPATTLDELCQIIKGPDFPTGGVIAGRDGIDSYLRTGRGIVRMRGR 180

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           +  E+T    EQI++TEIPY VN+A ++ +IAELV EK+I  I D+RDESD    R+VIE
Sbjct: 181 AITEETKTGGEQIIITEIPYNVNRANLVTRIAELVTEKQIEGIRDIRDESDE-NTRIVIE 239

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKRG  +  ILNQLY+ T+L+S F V ++AL+  +P++  +  +L  ++  R +V+ RRT
Sbjct: 240 LKRGEQSSPILNQLYQKTALESSFGVILLALDKRRPKQMNIRELLDCYIDHRRDVITRRT 299

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L +A DRAH+L G  IA+ NLD+ VRIIR S + + A+ +LM +             
Sbjct: 300 RFRLRRAEDRAHILEGYKIALDNLDDFVRIIRASASRQEAKEKLMAK------------- 346

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE QT +ILELRL +LTGL RD I  E   L   I+E   IL +
Sbjct: 347 -------------YPLSERQTDSILELRLYQLTGLERDKIEAEYLELLKLIEELKVILEN 393

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
             RL  +IK+ELL +K++    R+T I   L D   ED I  E  V+TVSHLG++KR P 
Sbjct: 394 DWRLREVIKEELLVMKEKYGDARKTEITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPS 453

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           + YR+Q+RGGKG  G    DEDFV  LF  STH  ++F +S G    +KV+ +P G   A
Sbjct: 454 ADYRSQKRGGKGVIGTETYDEDFVEHLFTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTA 513

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS-- 671
           +GK++ + L LN+GE+I  ++   +     ++ Y+V AT+ G +++  LSD++   R+  
Sbjct: 514 KGKSVSSFLRLNEGEKIAAMLCLQDFA---SDRYLVMATRRGVIKKTALSDYLGTTRNLE 570

Query: 672 -GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV------FAGRNSVGV 724
            G I + L   D I+     T  ++I+L +  G  VRF               GR + GV
Sbjct: 571 GGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLAVRFRERDPETGEELFRATGRATGGV 630

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            G+      DQ+  + +V H           +   +        +             + 
Sbjct: 631 TGMRFKLDNDQLDVIEVVDHTAKFLVASEAGLGVRTRFEDYRLINRGGRGVWAITLPDDN 690

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           +I+      +K  ++ I+ ++ KG   R      R  NR GKG++   +++ ++
Sbjct: 691 SINIAGALSVKDTDE-IMLLTTKGQSVRCPVNTIREVNRGGKGVKLLTLAEGDK 743



 Score = 89.5 bits (220), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 6/128 (4%)

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +E       + + G + + R +++   E  ++TVS  GF KRT S D+R   R GKG+  
Sbjct: 409 KEKYGDARKTEITGALGDFRMEDVIPNEGCVITVSHLGFIKRTPSADYRSQKRGGKGVIG 468

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---FSTA 886
           T+    + +  L   F  + +D I+ V+  G  +   V ++    R  KG  +       
Sbjct: 469 TETYDEDFVEHL---FTASTHDYIMFVTSTGQCLAKKVYDVPEGPRTAKGKSVSSFLRLN 525

Query: 887 KDERVVSV 894
           + E++ ++
Sbjct: 526 EGEKIAAM 533



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 89/246 (36%), Gaps = 15/246 (6%)

Query: 543 SHLGYVKRVPLSVY-RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +  G +K+  LS Y    R    G  G+ + + D +    + + +  ++  S  G   + 
Sbjct: 549 TRRGVIKKTALSDYLGTTRNLEGGLIGINLAEGDTIIGCVLTTGNDEIILVSHQGLAVRF 608

Query: 602 KVWRLPIG----SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +      G        R    +  +          ++   +  +       + A++ G  
Sbjct: 609 RERDPETGEELFRATGRATGGVTGMRFKLDNDQLDVIEVVDHTAK-----FLVASEAGLG 663

Query: 658 RRNKLSDFI--QINRSGKIAMKLDSRDEI--LSVETCTQENDILLTTKLGQCVRFPISAI 713
            R +  D+        G  A+ L   + I      +    ++I+L T  GQ VR P++ I
Sbjct: 664 VRTRFEDYRLINRGGRGVWAITLPDDNSINIAGALSVKDTDEIMLLTTKGQSVRCPVNTI 723

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R    R   GV+ ++LA+GD+++S+A V+  + + +         +++            
Sbjct: 724 REVN-RGGKGVKLLTLAEGDKLLSIAKVVETEEEQEAAAAAAAETASENTAPQQPGTPPP 782

Query: 774 SLKNDS 779
                 
Sbjct: 783 EAPASE 788


>gi|116074280|ref|ZP_01471542.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
 gi|116069585|gb|EAU75337.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9916]
          Length = 824

 Score =  593 bits (1529), Expect = e-167,   Method: Composition-based stats.
 Identities = 275/818 (33%), Positives = 418/818 (51%), Gaps = 54/818 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVEPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +H  LLD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISHQALLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+ +I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVRKPDLSDDKLLALIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGDREQ-----IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+    + +     +V+TE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHIEEIQPGKGRHKRGAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  + +L  L R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPEKVLVDLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ +L  V+ +I+ + +  +AR  LM        
Sbjct: 363 LTMIRRTTHALRKTEDRLEVVEGLITALDSLQRVIAMIQEAKDAASARASLM-------- 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLTGL ++ +RNE   L +E + 
Sbjct: 415 ------------------VHLDLTERQADAVLAMPLRRLTGLEQESLRNEAQELRLERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV------ 540
              +L  R +LL  + QEL  +K    TPRRTR++EG   +  E    +           
Sbjct: 457 LQLLLQERDQLLDAMVQELKQLKKRFATPRRTRLIEGGDHLLAEKAANQRPNAELQRRQA 516

Query: 541 --TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DFVTDLFIVSTHTSVLFFS 593
              +   G +        +       GR  +               +  +     +L  +
Sbjct: 517 LGALPSDGRLLIQNDGQVKVVSPQLLGRLHLNEAVGLGDEPSPAQLILPIQPAPRLLVLT 576

Query: 594 SLGFV---YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           + G +     E   + P G  +    AL               +P  +D S+   L +  
Sbjct: 577 ASGRMALLRWEFAGQQPGGLERFLPTALE-----GDPVVSLLRLPAADDASTNTRLSLGL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G  +R  L D  +++      +KL     +LS   C     + L + +G+ +  P+
Sbjct: 632 LSTDGRFKRLPLDDVQELSGRAATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPV 691

Query: 711 SAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                   G+ + G   + +  G+ ++          +                 +    
Sbjct: 692 QDDNLPLMGKLAQGPMTMRMLPGETLVGAVSQSAGGENLLVGSRNGALRRLSLSSLRRCK 751

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                    +        +R          +  V+ KG
Sbjct: 752 RGDLGEMAITLQGKGNDADRLVSACTCADLVGVVTSKG 789



 Score = 39.8 bits (91), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 9/148 (6%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  ++   A ++    +    T+L+ D  V                  +  +S  G  K
Sbjct: 580 RMALLRWEFAGQQPGGLERFLPTALEGDPVVSLLRLPAADDASTNTRLSLGLLSTDGRFK 639

Query: 811 RTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           R    D + +S R      A  + K+ +  +L++     D   + L+SD G ++ +PV +
Sbjct: 640 RLPLDDVQELSGR------AATILKLKDGVSLLSAVICEDGGTVTLISDIGRVLCLPVQD 693

Query: 870 --IRIASRATKGVVIFSTAKDERVVSVE 895
             + +  +  +G +       E +V   
Sbjct: 694 DNLPLMGKLAQGPMTMRMLPGETLVGAV 721


>gi|296167138|ref|ZP_06849545.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
 gi|295897460|gb|EFG77059.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mycobacterium
            parascrofulaceum ATCC BAA-614]
          Length = 1259

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 282/787 (35%), Positives = 424/787 (53%), Gaps = 92/787 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     +DN     +  L A+ E ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLAAVCERVKGPDFPTHGLIVGSQGIHDAYTTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ R+  IA++ D+ SDR
Sbjct: 671  SIRMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGRLTGIANIEDQSSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +VA +
Sbjct: 731  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++      
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE------ 844

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 845  --------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GI++ EL  + D+    RRTRIV    D+ DED I RED+VVT++  
Sbjct: 885  DLEDILAKPERQRGIVRDELTEIVDKHGDDRRTRIVAADGDVNDEDLIAREDVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVSSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++ KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNGLVKKTKLTDF 1061

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C+ E D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1062 DSNRSGGIVAINLRDNDELVGAVLCSSEEDLLLVSANGQSIRFSATDEALRPM-GRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D ++S+ +V                                          
Sbjct: 1121 VQGMRFNTDDYLLSLNVVREGT-------------------------------------- 1142

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++L  +  G+ KRT+  ++ +  R GKG+      +    G LV 
Sbjct: 1143 ---------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMFDRR--RGKLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  +D  ++++ R  E    
Sbjct: 1186 ALIVDDDSELYAITSGGGVIRTDARQVRKAGRQTKGVRLMNLGEDNTLLAIARNAEENAD 1245

Query: 904  DEAESTE 910
            +  E  E
Sbjct: 1246 EVVEEAE 1252



 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/140 (53%), Positives = 93/140 (66%), Gaps = 5/140 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY--TE---CRL 135
             DPPAA RY  TE    RL
Sbjct: 121 GNDPPAAMRYCLTEDALVRL 140


>gi|313904178|ref|ZP_07837557.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
 gi|313470980|gb|EFR66303.1| DNA topoisomerase (ATP-hydrolyzing) [Eubacterium cellulosolvens 6]
          Length = 744

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 254/742 (34%), Positives = 398/742 (53%), Gaps = 28/742 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M+++G  +++ Y K
Sbjct: 2   EEIIRTEYSEIMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMLELGTYFDRPYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IYDAL  MAQD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 62  AARIVGDTMGKYHPHGDSSIYDALVVMAQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTEA 121

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RLQK    + L DL K+ V+F PN+D + +EP VL  R PN+LVNG  GIAVGMAT+IP 
Sbjct: 122 RLQKFTQEVYLKDLDKNVVNFVPNFDETEKEPEVLPVRVPNILVNGSDGIAVGMATSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEV+D   A I N D+    LM+ I+GPDFPTG +++ +  +   Y +G G I IRG
Sbjct: 182 HNLGEVIDAAKAYIGNKDLTDRQLMKYIKGPDFPTGGIVVNKDDLPQIYESGSGKIRIRG 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQGYR 309
              +EK    R+ +V+TEIPY +  A + + + +   LV  ++  +I D+ + S ++G R
Sbjct: 242 KVEVEKGKNGRQSLVITEIPYTMIGANIGKFLMDVAGLVENRQAPEIVDISNMSSKEGIR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ELK+GA  + + N LY+ T L+  F VNM+A+ G +PE  +L  +L  F  F+ E+ 
Sbjct: 302 IVLELKKGADVERLKNLLYKKTRLEDTFGVNMLAVAGGRPETLSLKKVLDNFTDFQFELA 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R+ + +L K  ++  V  GL  AV  +D ++ I+R S + +  R  L     +  + K 
Sbjct: 362 TRKYQQMLQKELEKKEVQEGLIKAVDVIDLIIEILRGSKSQKQVRDCLTMGVTDGINFK- 420

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                     +      +  ++ Q  AILE+RLA+L GL  D +  E      +I    +
Sbjct: 421 -------HKSSEKQAKELCFTQRQATAILEMRLAKLIGLELDALYKENEETIAKIARYEN 473

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+    + G+I  +L  +K    TPR+T I      +  E      ++V  +   GYV+
Sbjct: 474 ILNDYDTMAGVIVDDLEQIKKNYATPRKTVIENAEAIVLAEPEEEETELVFLMDRFGYVR 533

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V  SVY   +             +     +F   +   V  ++  G ++  KV  +P  
Sbjct: 534 TVDTSVYDRNKEAA----------DAENKYIFHCMSTDRVCVYTDNGMMHTIKVKDIPFT 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G  + N+ + +        + F    +      +VF T  GNV+    S+F    
Sbjct: 584 KFRDKGTPIDNLCNYSADNE---RVVFAGPMAEVKQKKLVFVTASGNVKIVSGSEFDVNR 640

Query: 670 RSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                A KL    D ++ V      + +++ ++ G  +RFP++ I     + +VGVRGIS
Sbjct: 641 -KVISATKLADDADSVVLVGYADAGDFLVIQSRDGYFLRFPMTEIPEKK-KTAVGVRGIS 698

Query: 729 LAKGDQVISMAIVLHADADYDE 750
           L K D+  +  +V   +    E
Sbjct: 699 LGKDDEAEAAYLVAGGNEMEIE 720



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK-INEIGALVAVFPVNDNDQII 854
           K++ ++ V+  G  K  S  +F + NR     +    +K  ++  ++V V   +  D ++
Sbjct: 615 KQKKLVFVTASGNVKIVSGSEFDV-NR-----KVISATKLADDADSVVLVGYADAGDFLV 668

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           + S  G  +R P+ EI    +   GV   S  KD+ 
Sbjct: 669 IQSRDGYFLRFPMTEIPEKKKTAVGVRGISLGKDDE 704


>gi|291523172|emb|CBK81465.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus catus GD/7]
          Length = 745

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 246/730 (33%), Positives = 386/730 (52%), Gaps = 27/730 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ I      + MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++ + ++K Y 
Sbjct: 2   QEQIIRTDYAEVMQKSYVDYAMSVIISRALPDIRDGLKPVQRRTLYDMYELAIRYDKPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IYDAL  MAQ++   + L++G GNFGS++GD  AA RYTE
Sbjct: 62  KCARIVGDTMGKYHPHGDSSIYDALVVMAQEFKKGMPLVDGHGNFGSIEGDGAAAMRYTE 121

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RLQK    + L DL KD VDF PN+D + +EP VL  R PN LVNG  GIAVGM T+ P
Sbjct: 122 ARLQKVTQEVFLADLDKDVVDFMPNFDETEKEPTVLPVRLPNFLVNGSDGIAVGMVTSTP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D   A + N  +    LM+ I+GPDFPTG ++  +  + N Y TG G I +R
Sbjct: 182 PHNLGEVIDAVKAYMKNDKLTTADLMQYIQGPDFPTGGIVTNKDELLNIYETGSGKIKLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGY 308
           G   +E+  G + ++V+TEIPY +  A + +    +  LV  K+  DI D+ ++S ++G 
Sbjct: 242 GRVEVEQDKGGKLRLVITEIPYTMIGANIGKFLNDVYALVESKKTTDIIDISNQSSKEGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+    D +L  LY+ T L+  FSVNM+A+   +PE   L  I++ F+ F+ ++
Sbjct: 302 RIVLELKKQTDVDNLLALLYKKTRLEDTFSVNMLAIADGRPETLGLKSIIEYFLDFQYDL 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+ + LL K  ++  +  GL  A   +D ++ I+R S N + A+  LM  +       
Sbjct: 362 TTRKYQKLLAKELEKQEIQEGLMRATDIIDLIIEILRGSKNIKQAKACLMTGTTEG---- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
               +   S  +  +   +  +E Q  AILE+RL +L GL  D +  + ++    I    
Sbjct: 418 ----IRFKSKASERAASALDFTERQATAILEMRLYKLIGLEMDALLKDHDATLKNIASYK 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +   +  +I  +L  +K    TPR+T I      + +E      ++V  +   GY 
Sbjct: 474 DILENHKSMSRVISHDLDMIKKTYATPRKTSIENVRAAVYEEKKAEAMEVVALIDRFGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  + +   +                   +           F+  G ++  K+  +P 
Sbjct: 534 KTIDKATFERNKEAAL----------SENKYVIDCMNTDKACIFTDTGRLHLIKITDMPF 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +   L N+ + +        +          +  ++F TK G ++  K S+F   
Sbjct: 584 GRFRDKSIPLDNLGNYDSSGENIIHICSLASIH---DAMLLFVTKTGMLKLVKGSEFDVS 640

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                 A KL   D I+++      N ++L T+ G  +RFP+  I     + ++GVRGIS
Sbjct: 641 K-RTVAATKLADGDNIITICIADNFNQLVLQTENGYFIRFPMMNIPEMK-KTAIGVRGIS 698

Query: 729 LAKGDQVISM 738
           L  GD V + 
Sbjct: 699 LGSGDSVKAA 708



 Score = 72.1 bits (175), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 61/174 (35%), Gaps = 6/174 (3%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L++   VI       A    D    ++  ++        D         +    G     
Sbjct: 549 LSENKYVIDCMNTDKACIFTDTGRLHLIKITDMPFGRFRDKSIPLDNLGNYDSSGENIIH 608

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C    + +  +L V++ G  K     +F +S R          +K+ +   ++ +   +
Sbjct: 609 ICSLASIHDAMLLFVTKTGMLKLVKGSEFDVSKR------TVAATKLADGDNIITICIAD 662

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + +Q++L ++ G  IR P+  I    +   GV   S    + V +   +  S+ 
Sbjct: 663 NFNQLVLQTENGYFIRFPMMNIPEMKKTAIGVRGISLGSGDSVKAAYPLDSSQE 716


>gi|291525297|emb|CBK90884.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Eubacterium rectale DSM 17629]
          Length = 751

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 250/737 (33%), Positives = 397/737 (53%), Gaps = 27/737 (3%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
               ++ MQ SY+ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ ++K Y K ARI
Sbjct: 15  QTEYSELMQKSYIDYAMSVIIARALPDVRDGLKPVQRRTLYDMHELGIRYDKPYRKSARI 74

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+ MGKYHPHG+++IYDA+  +AQD+   + LI+G GNFGS++GD  AA RYTE RLQK
Sbjct: 75  VGDTMGKYHPHGDSSIYDAMVVLAQDFKKGMPLIDGHGNFGSIEGDGAAAMRYTEARLQK 134

Query: 138 AAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
                 L DL K+ VDF PNYD + +EP VL  + PN+L+NG  GIAVGMAT+IP HN G
Sbjct: 135 ITQEAYLADLDKNVVDFIPNYDETEKEPEVLPVKVPNLLINGAEGIAVGMATSIPPHNFG 194

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           EVVDG +A + NPDI    +M+ I+GPDFPTG ++  +  +   Y TG+G I IRG   I
Sbjct: 195 EVVDGVIAYMKNPDITTAEMMQYIKGPDFPTGGIVANQDDLAAIYETGQGKIKIRGRIEI 254

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           EK    ++++V+TEIPY +  A + +    +  LV  K   DI D+ ++S ++G R+V+E
Sbjct: 255 EKGKAGKDKLVITEIPYTMIGANIGKFLNDVYSLVESKATTDIVDITNQSSKEGIRIVLE 314

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+GA  + + N LY+ T L+  F VNM+A+   +PE   L+ I++  V F+ E+  R+ 
Sbjct: 315 LKKGADVEALKNLLYKKTKLEDTFGVNMLAVANGRPETLGLVPIIRHHVNFQYEIAKRKY 374

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           + LL K +++  +  GL  A   +D ++ I+R S + + A+  L+         K     
Sbjct: 375 ETLLAKEQEKEEIQQGLIKACNVIDLIIEILRGSRDQKMAKACLINGETEGIKFKS---- 430

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +      +  +E Q  AILE+RL +L GL  + +  E      +I E  DIL  
Sbjct: 431 ----KASEAMAAQLCFTERQAAAILEMRLYKLIGLEIEALIKEHEETRAKIAEYSDILEH 486

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           RS +  +I +EL + + E    RRT +      +  +  +   D+V+ +   GYVK V  
Sbjct: 487 RSSMAKVIMKELKAFRKEYARDRRTELDNLEEAVVVKKELEVSDVVLLMDRFGYVKTVDT 546

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           S Y   +             +     +  V     +  F++ G ++  KV  LP G  + 
Sbjct: 547 STYDRNKDTA----------DAENKLILKVKNIDKLCIFTNNGNMHLVKVLDLPYGKFRD 596

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G  + N+ + +  +     +    D        ++F TK   ++    ++F+       
Sbjct: 597 KGTPIDNVSNYDSSKEDIVFIAPLMDVEKHK---LIFGTKSAMIKLVDGAEFVVTR-KTS 652

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            A KL   DE+L V+  ++   +++ +K    +R     I     + +VGVRG+ L + D
Sbjct: 653 QATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKK-KAAVGVRGMRLDRED 711

Query: 734 QVISMAIVLHADADYDE 750
           ++  + ++   +    E
Sbjct: 712 ELTDIYLLYDQEEKEVE 728



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/137 (10%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D        ++              + +++  ++  ++    K     +F ++       
Sbjct: 596 DKGTPIDNVSNYDSSKEDIVFIAPLMDVEKHKLIFGTKSAMIKLVDGAEFVVTR------ 649

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           + +  +K+ +   L+ V  +++N  +++ S K   +R+    I    +A  GV      +
Sbjct: 650 KTSQATKLMDDDELLFVDMLSENATMVMRSKKEMFLRIDCGTIPEKKKAAVGVRGMRLDR 709

Query: 888 DERVVSVERIRESEIVD 904
           ++ +  +  + + E  +
Sbjct: 710 EDELTDIYLLYDQEEKE 726


>gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 473

 Score =  593 bits (1528), Expect = e-167,   Method: Composition-based stats.
 Identities = 247/496 (49%), Positives = 345/496 (69%), Gaps = 26/496 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           EE +  I  V I +EM+ SY+ YA++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+  +K
Sbjct: 2   EELDFRIIPVEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K A + G V+ KYHPHG+AA+Y++L RMAQD+S+R  L++G GNFGSVDGDPPAA R
Sbjct: 62  PYRKSATVVGHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ + A  +L D+ K+TVDF PN+D S +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 122 YTEARMSRIALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL EV+D  V ++DN +  LD +M+II+GPDFPTG  I+G+ GIK+AYATG+G I+
Sbjct: 182 IPPHNLAEVIDAIVYLLDNENATLDDIMKIIKGPDFPTGGYIIGKKGIKDAYATGKGKII 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE+TS  R++I+VTE+PY VNKA ++EKIAELV EK+I  I+D+RDESD++G R
Sbjct: 242 VRAKTTIEQTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE+K+ A A+V+L QLY+ T LQ  F + M+AL   +P+  TL+ +L  ++  ++EV+
Sbjct: 302 IVIEIKKDADANVVLKQLYKNTQLQDSFGIIMLALVDNQPKVLTLMDMLNLYIEHQKEVI 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           VRRT+Y L KA +RAH+L GL  A+ ++DE++ IIR S     A+  L+ R         
Sbjct: 362 VRRTRYDLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISR--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +E Q +AIL++RL RLTGL R  I  EL  L   I+   +
Sbjct: 413 -----------------FQFTEAQAQAILDMRLQRLTGLERQKIEEELAELIRMIEYYKN 455

Query: 490 ILSSRSRLLGIIKQEL 505
           +L+S + +  IIK+  
Sbjct: 456 VLASDAMVKEIIKKRF 471


>gi|33239457|ref|NP_874399.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33236982|gb|AAP99051.1| Type IIA topoisomerase, A subunit, ParC [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 828

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 268/824 (32%), Positives = 424/824 (51%), Gaps = 53/824 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++    +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+   + + 
Sbjct: 3   KERFQPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPERPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  +++G GNFGS+D DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQSFSSRYPVLDGHGNFGSIDDDPPAAMRYTE 122

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A   LL+++   TVDF  N+DGS QEP VL A+ P +++NG  GIAVGMATNIP
Sbjct: 123 TRLAPIANQALLNEIDDKTVDFSQNFDGSQQEPDVLPAQLPFLVLNGCSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ E+++G +A+I  P++  D L+EII GPDFPTG  IL   GIK  Y  G+GSI +R
Sbjct: 183 PHNINEIINGLIALIKKPELSEDKLIEIIPGPDFPTGGEILLSNGIKETYLKGKGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+ +       ++ IV+TE+PYQVNKAA +EK+A+LV   +I  IAD+RDESDR 
Sbjct: 243 GITHIEEINPGKGKHRKKGIVITELPYQVNKAAWIEKLADLVNNSKIDGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIEL+R    +++ + LY+ T+LQ+ FS  ++AL   +P++ +L  +L  F+ +RE
Sbjct: 303 GMRIVIELRRDIDHEIVKDTLYQKTNLQNNFSATLLALVNGQPKQLSLKRLLIIFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             + +RTK  L +   R  +L GL  A+ NL +V+ +I  + +   A+ ++M        
Sbjct: 363 LTIRKRTKNKLKQTLARLEILEGLIKALKNLKKVINLIENAKDSIDAKIKIMSE------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q+  IL + L +LT L    + NE N L I  K 
Sbjct: 417 --------------------LKLNEKQSEGILSMPLRKLTNLETQGLYNEANDLKILEKN 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVREDM 538
             +IL +RS+LL  +  EL  +K +  + R+T++VEG  ++  E          + R+  
Sbjct: 457 LREILENRSQLLSEMVNELKLLKKKFGSQRKTKLVEGGDELVAERNANLRPNAELQRKKA 516

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR----DEDFVTDLFIVSTHTSVLFFSS 594
             ++   GY+        +  R     +  +       +    T L         +   +
Sbjct: 517 FESLPKDGYLLIQDDDQVKILRPQILTKLNLTESCLLGEGPVPTRLLWPIAKQPKILAIT 576

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
                    W      P    + L + L   +   +  ++          NL +   +  
Sbjct: 577 NHGKIALLKWEFAGSQPGQLNRFLPSGLEGEKITNLLPLLNT-------ENLSLGLLSTD 629

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G  +R  L++ I I+      +KL     + S   C     +L+ T +G+ ++  I+   
Sbjct: 630 GRFKRTNLNEIIDISGRATTILKLKDGVFLKSALLCPLNGHLLVVTNIGRIIKLKINEES 689

Query: 715 -VFAGRNSVGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGDTEEI 772
               G+ + G   I L  G+ +I        +  +          +    + I   ++  
Sbjct: 690 IPLMGKLAQGSVMIKLFPGENIIGALTTKEKENCNIILISEKGTVIKHSLKSIKESSKGD 749

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                 S  + N  ++R  +    +Q +   + +G   R SS  
Sbjct: 750 LGEIGISFKDKNNQKDRLIQTYNAKQLVGIKTNQGKHGRVSSNQ 793



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 9/140 (6%)

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSG 824
           +G      +    S +EG         L  +   +  +S  G  KRT+  +   IS R+ 
Sbjct: 589 AGSQPGQLNRFLPSGLEGEKITNLLPLLNTENLSLGLLSTDGRFKRTNLNEIIDISGRAT 648

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVI 882
                  + K+ +   L +      N  +++V++ G +I++ +NE  I +  +  +G V+
Sbjct: 649 ------TILKLKDGVFLKSALLCPLNGHLLVVTNIGRIIKLKINEESIPLMGKLAQGSVM 702

Query: 883 FSTAKDERVVSVERIRESEI 902
                 E ++     +E E 
Sbjct: 703 IKLFPGENIIGALTTKEKEN 722


>gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12]
 gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12]
          Length = 777

 Score =  592 bits (1527), Expect = e-167,   Method: Composition-based stats.
 Identities = 257/748 (34%), Positives = 396/748 (52%), Gaps = 43/748 (5%)

Query: 1   MTEHIISSDEEEEKGITS------VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           M++     + ++              +   +   YL YA++ I+ RA+PD RDGLKPVHR
Sbjct: 1   MSDTTDDPNMDDPDAEEPGAAQTSEPLRRAIGARYLQYALSTIMHRALPDARDGLKPVHR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQ
Sbjct: 61  RILYAMRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFG++DGD PAA RYTE RL  AA  L++ L ++ VDFR NYDG+  EP VL A +PN+
Sbjct: 121 GNFGNIDGDNPAASRYTEARLTAAAEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNL 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L NG  GIAVGMATNIP HNL E++DGC+ +I  P+   + L+E+I GPDFPTG VI+  
Sbjct: 181 LANGSSGIAVGMATNIPPHNLHELIDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEP 240

Query: 235 TG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
              I  AYATGRG+  +R     E     + QIV+TEIPYQV K+ ++EKIA+L++ K++
Sbjct: 241 KESIAQAYATGRGAFRLRARWAREDLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKV 300

Query: 294 VDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPER 351
             +AD+RDES     R+++E + +    +V++  L+R + L++ FS+NM   ++G  P+ 
Sbjct: 301 PILADIRDESA-DDVRIILEPRSKNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKV 359

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
            +L  +L+AF+  R +V+ RR+++ L K   R  VL G  +A  NLD V+ IIR+  +P 
Sbjct: 360 CSLREVLRAFLDHRRDVLGRRSRHRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDP- 418

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             +  LM+  W+   ++      D++ Y   + G   L+EVQ  AIL +RL  L  L   
Sbjct: 419 --KAALMREDWSLKHVRA----TDEADYKTPAPGEGELTEVQAEAILNMRLRSLRRLEEM 472

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD 526
           ++ +E ++L  E  E  D+L+  +     I  EL  V+ +         RRT        
Sbjct: 473 ELISERDALMAERAELEDLLADEALQWARIADELREVRKQFGKGTALGKRRTDFAVATEM 532

Query: 527 --MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
             +  ED I RE + V  S +G++        RA +        +  +D D    +F   
Sbjct: 533 AEVSLEDMIEREPITVVCSKMGWI--------RAMKGHVALDQALKFKDGDEGRFIFHAE 584

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T   +L F + G  Y      LP G  +  G+ +  ++ L             +      
Sbjct: 585 TTDKLLAFGANGRFYTLSCAALPGG--RGMGEPIRLMVDLPNEAE------LVDLFLHVP 636

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
              ++ A+  G+      ++ +   R+GK  + + S    L        + I    +  +
Sbjct: 637 GRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAG-DAIAAVGENRK 695

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + F    +    GR   GVR      G
Sbjct: 696 LLVFAADELPEM-GRG-KGVRLQKYKDG 721


>gi|260906706|ref|ZP_05915028.1| DNA topoisomerase IV subunit A [Brevibacterium linens BL2]
          Length = 915

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 267/841 (31%), Positives = 408/841 (48%), Gaps = 93/841 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  V ++ EM++S+L YA++VI  RA+PD RDGLKPV RRI++ M  MG+   + +V
Sbjct: 3   EGRVIDVDVSSEMESSFLEYAVSVIHSRALPDARDGLKPVQRRIVYQMGDMGLRPERGHV 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K +RI G+VMGK HPHG+ AIYDAL R++Q + +R+ L++G GNFGS+D D PAA RYTE
Sbjct: 63  KSSRIVGDVMGKLHPHGDTAIYDALVRLSQSFIMRVPLVDGHGNFGSLD-DGPAAPRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL  A+  ++  L +D VDF  NYD +  +P VL + +PN+L+NG  GIAVGMATN+  
Sbjct: 122 ARLTSASMQMIAGLDEDVVDFVGNYDNTLTQPEVLPSAFPNLLINGTSGIAVGMATNMAP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN GEV+  C  +I NP+  L  LM  I GPD PTG  I+G  G++ AY TGRG+   R 
Sbjct: 182 HNPGEVIAACCHLIRNPEAGLAELMRFIPGPDLPTGGRIIGLDGVREAYETGRGTFRTRA 241

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVV 311
              IE  +  R+ IVVTE+PY V    ++ K+ + V  K++  IA + D SDR  G R+V
Sbjct: 242 TVSIENINARRKGIVVTELPYLVGPEKVVSKVKDAVGAKKLTGIASIDDYSDRKNGMRLV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I +K G + + +L +LYR T L+  FS+N V L   +P    L  +L  ++A R +V+ R
Sbjct: 302 IGIKNGFNPEAVLAELYRQTPLEESFSMNNVCLVDGQPRTLGLRELLTVYLAHRIDVIRR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT + L KA+DR H++ GL IA+ ++DEV+++IR S +  TAR  LM             
Sbjct: 362 RTVFQLRKAKDRLHLVEGLLIAILDIDEVIQLIRSSDDAATARTRLM------------- 408

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LSE+Q   IL+L+L RLT   R ++  E + L  +I    D+L
Sbjct: 409 -------------DVFELSELQATYILDLQLRRLTKFSRIELEAERDELRKKIAYLEDLL 455

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--------EDEDCIVREDMVVTVS 543
           +  ++L  ++  EL +  + + +PRRT ++EG +          + +  I      V +S
Sbjct: 456 ADEAKLRELVATELEATAEAIGSPRRTVLIEGSMKELSAKGKKAQADLKIADAPCRVLLS 515

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G + R               +        D +    + +T   V   +S G ++   V
Sbjct: 516 TSGRIAR--------TADASPLQRVGKRSSHDALRSEIVSTTQGKVGAVTSTGRLHMVDV 567

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP   P A    +   + +     +              +   V  T  G V+R  ++
Sbjct: 568 VDLPALPPAATRPNVAGGVKIADYVTLEKNETVLGLIDL--DREFVLGTAGGVVKRVSVA 625

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNS 721
              + N+S   A+ L  +D ++ V      ++   +  T   Q + F  S +R   G N+
Sbjct: 626 --ARPNKSEWEAITLKGKDSVIGVAQPKDIDESLAVFVTSNAQLLAFDASGLRA-QGWNA 682

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV G+ +A                               R L  G T +      +   
Sbjct: 683 SGVAGMKVAAD----------------------------ARALFFGMTPKAAKTDEEGDA 714

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFG------KRTSSYDFRISNRSGKGIRATDVSKI 835
           + NI       +   E F        +G      K +   ++    R+  G+RA    K 
Sbjct: 715 DTNIGTFAVVTVASGENF--------YGAPSSSIKVSDFSEYPTKGRATSGVRAHKFLKG 766

Query: 836 N 836
            
Sbjct: 767 E 767



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 50/179 (27%), Gaps = 9/179 (5%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +++S             R+  +  +       +     +      +        E    L
Sbjct: 544 EIVSTTQGKVGAVTSTGRLHMVDVVDLPALPPAATRPNVAGGVKIADYVTLEKNETVLGL 603

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
              ++  +  +  G  KR S       +       A  +       +++ V    D D+ 
Sbjct: 604 IDLDREFVLGTAGGVVKRVSVAARPNKSE----WEAITLKGK---DSVIGVAQPKDIDES 656

Query: 854 I--LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +   V+    L+    + +R       GV     A D R +      ++   DE    +
Sbjct: 657 LAVFVTSNAQLLAFDASGLRAQGWNASGVAGMKVAADARALFFGMTPKAAKTDEEGDAD 715


>gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11]
          Length = 782

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 260/740 (35%), Positives = 397/740 (53%), Gaps = 39/740 (5%)

Query: 1   MTEHIISSDEEEEKGITSV--SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I   + E       +   +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MNDTIDDPNMEAPDNGGEIAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  LL+ L +D VDFR NYDG+  EPVVL A++PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTIVAEALLEGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGI 237
             GIAVGMATNIP HN+ E+ D C+ +I  PD   D L+  + GPDFPTG  ++     I
Sbjct: 181 SSGIAVGMATNIPPHNISELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K+I  +A
Sbjct: 241 AQAYRTGRGSFRLRCKFEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILA 300

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLI 355
           D+RDES     R+++E + +    +V++  LYR + L+  FS+NM   ++G  P+  ++ 
Sbjct: 301 DVRDESA-DDIRLILEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMK 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+AF+  R+EV++RR+++ + K   R  VL G  +A  NLD V+ IIR+  +P   + 
Sbjct: 360 EVLRAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDP---KA 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+  W    ++       ++ Y     G   LSEVQ  AIL +RL  L  L   ++  
Sbjct: 417 ALMREDWGIDHVRA----TSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVR 472

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDME 528
           E + L +E     D+L+  +     I ++L   K           RRT+  E   + ++ 
Sbjct: 473 ERDELMLERANLEDLLADPALQWAKIAEQLRETKKTFGKDYEGGARRTQFAEAGQVEEVP 532

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  I RE + V  S +G++        RA       +  +  +D D    +F   T   
Sbjct: 533 LEAMIDREPITVVCSQMGWI--------RAMTGHIDLKRELKFKDGDGPRFIFHAETTDR 584

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F+S G  Y      LP G  +  G+ L  ++ L    +I  I+             +
Sbjct: 585 LLVFASNGRFYTVSAANLPGG--RGMGEPLRLMVDLPNEAQIIDIL------IHKPGRKL 636

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN       D +   R+GK  + +   +  +  +     + + + ++ G+ + F
Sbjct: 637 LVASDAGNGFMVPEDDVLAQTRNGKQVLNVKGGETAMICKPVDG-DHVAVVSQNGKFLVF 695

Query: 709 PISAIRVFAGRNSVGVRGIS 728
           P + +         GVR   
Sbjct: 696 PTNELPEMT--RGKGVRLQK 713



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 65/231 (28%), Gaps = 27/231 (11%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    D+    R  + A      +  L      +   ++  +++G         IR   
Sbjct: 506 KKTFGKDYEGGARRTQFAEAGQVEEVPLEAMIDREPITVVC-SQMGW--------IRAMT 556

Query: 718 GRNSVGVRGISLAKGDQVISMA----IVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           G        I L +  +         I      D                        + 
Sbjct: 557 GH-------IDLKRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSAANLPGGRGMG 609

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                     N ++     +    + +L  S+ G G      D     R+GK +      
Sbjct: 610 EPLRLMVDLPNEAQIIDILIHKPGRKLLVASDAGNGFMVPEDDVLAQTRNGKQVLNVKGG 669

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +   I       PV D D + +VS  G  +  P NE+   +R  KGV +  
Sbjct: 670 ETAMI-----CKPV-DGDHVAVVSQNGKFLVFPTNELPEMTR-GKGVRLQK 713


>gi|7404425|sp|P73077|PARC_SYNY3 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
          Length = 920

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 278/950 (29%), Positives = 442/950 (46%), Gaps = 93/950 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M      S +     I    + +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MARKSFPSGQ-----IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM QD+S R  L+ G GNFGSV
Sbjct: 56  YELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSV 115

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   A   +L+ + +  VDF  N+D S +EP V+ A+ P +L+NG 
Sbjct: 116 DNDPPAAMRYTETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGC 175

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP HNLGEVVDG + +I+ PD+    L ++I GPDFPTG  IL   GI  
Sbjct: 176 SGIAVGMATSIPPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQ 235

Query: 240 AYATGRGSIVIRGVSHIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RGVSHIE          +R  IV+TE+P+QVNKAA +EKIA LV + ++
Sbjct: 236 AYQTGRGLIPVRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKL 295

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+DLRDESDR G RVVIELKR A  + IL +LYR T LQS F V  +AL   +P + +
Sbjct: 296 DGISDLRDESDRTGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMS 355

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL+ F+ FRE+ ++R+ +  L + R R  +L GL I + NLD ++ I+RF+ +  TA
Sbjct: 356 LRQILQEFLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTA 415

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +L +R                          + +S  Q  AIL + + R+TGL R+ +
Sbjct: 416 KIQLQER--------------------------LGISLQQGDAILGMPMRRITGLEREKL 449

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           + E   L   I++   ++  R   L  +K+EL  +K +    RRT+I++G+    +   +
Sbjct: 450 QQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKILQGMPAKIEPLPV 509

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ++ +          +  P     +     + +  +                    L   
Sbjct: 510 NQDPLPEATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVK 569

Query: 594 SLGFVYKEKVWRLPI-----------------GSPQARGKALINILSLNQGERITTI--- 633
                 K++    P                       +       LS+N    I      
Sbjct: 570 PTPKTVKQEAQPSPEVIATHSKLVSVAEKNPLTLFTPQTPPAEAFLSINLQGEIAWHPEE 629

Query: 634 -------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
                   P  +  S      ++    HG      ++D   +  +    +++  +     
Sbjct: 630 LTSANSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRD 689

Query: 687 V---------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV-- 735
                         Q  D+LL ++ G+        ++    R   G+  + L  GD +  
Sbjct: 690 ATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGPR---GLSLMKLKNGDLLQF 746

Query: 736 ------ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 ++ A   +   +        + +      +       ++   ++          
Sbjct: 747 AQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLV 806

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +      +L +++ G+GK+      R+ N    G      +  ++   L+ +   N 
Sbjct: 807 GVLMASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFT--SKADRLLTMVAANQ 864

Query: 850 NDQ------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             Q          S++  L  V  ++ +   +   G  +    + E +++
Sbjct: 865 GAQSPQSSTYDFYSNQQRLHSVQADQFQPWGKDGFGDRLVDLNEGEHLIT 914



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVA----VFPV 847
             + Q +L VS++G  K  +  +  +     +G+    +   +  +   LV         
Sbjct: 702 PEQPQDLLLVSQQGRVKLLAGQE--LQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASAQ 759

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIA--SRATKGVVIFSTAKDERVVSV 894
           N    +++ +  G L+R    ++ +   S + +G         E +V V
Sbjct: 760 NPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLVGV 808


>gi|16329694|ref|NP_440422.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
 gi|1652178|dbj|BAA17102.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803]
          Length = 944

 Score =  592 bits (1526), Expect = e-167,   Method: Composition-based stats.
 Identities = 278/950 (29%), Positives = 442/950 (46%), Gaps = 93/950 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M      S +     I    + +EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M
Sbjct: 25  MARKSFPSGQ-----IIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAM 79

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM QD+S R  L+ G GNFGSV
Sbjct: 80  YELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSV 139

Query: 121 DGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D DPPAA RYTE RL   A   +L+ + +  VDF  N+D S +EP V+ A+ P +L+NG 
Sbjct: 140 DNDPPAAMRYTETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGC 199

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT+IP HNLGEVVDG + +I+ PD+    L ++I GPDFPTG  IL   GI  
Sbjct: 200 SGIAVGMATSIPPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEGILQ 259

Query: 240 AYATGRGSIVIRGVSHIEKTS------GDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           AY TGRG I +RGVSHIE          +R  IV+TE+P+QVNKAA +EKIA LV + ++
Sbjct: 260 AYQTGRGLIPVRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKL 319

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             I+DLRDESDR G RVVIELKR A  + IL +LYR T LQS F V  +AL   +P + +
Sbjct: 320 DGISDLRDESDRTGMRVVIELKRDAEPNAILQKLYRMTPLQSNFGVIFLALVNNQPVQMS 379

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL+ F+ FRE+ ++R+ +  L + R R  +L GL I + NLD ++ I+RF+ +  TA
Sbjct: 380 LRQILQEFLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTA 439

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + +L +R                          + +S  Q  AIL + + R+TGL R+ +
Sbjct: 440 KIQLQER--------------------------LGISLQQGDAILGMPMRRITGLEREKL 473

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
           + E   L   I++   ++  R   L  +K+EL  +K +    RRT+I++G+    +   +
Sbjct: 474 QQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFADERRTKILQGMPAKIEPLPV 533

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            ++ +          +  P     +     + +  +                    L   
Sbjct: 534 NQDPLPEATIPPVESQSAPEEELDSPGEPEQEQLVLENSSPPTADSAPEAKQDDLNLAVK 593

Query: 594 SLGFVYKEKVWRLPI-----------------GSPQARGKALINILSLNQGERITTI--- 633
                 K++    P                       +       LS+N    I      
Sbjct: 594 PTPKTVKQEAQPSPEVIATHSKLVSVAEKNPLTLFTPQTPPAEAFLSINLQGEIAWHPEE 653

Query: 634 -------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
                   P  +  S      ++    HG      ++D   +  +    +++  +     
Sbjct: 654 LTSANSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRD 713

Query: 687 V---------ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV-- 735
                         Q  D+LL ++ G+        ++    R   G+  + L  GD +  
Sbjct: 714 ATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGPR---GLSLMKLKNGDLLQF 770

Query: 736 ------ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 ++ A   +   +        + +      +       ++   ++          
Sbjct: 771 AQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLV 830

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +      +L +++ G+GK+      R+ N    G      +  ++   L+ +   N 
Sbjct: 831 GVLMASPGDRVLLLTQAGYGKQLDLASVRLGNFGELGTTVMQFT--SKADRLLTMVAANQ 888

Query: 850 NDQ------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             Q          S++  L  V  ++ +   +   G  +    + E +++
Sbjct: 889 GAQSPQSSTYDFYSNQQRLHSVQADQFQPWGKDGFGDRLVDLNEGEHLIT 938



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 41/109 (37%), Gaps = 10/109 (9%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN--EIGALVA----VFPV 847
             + Q +L VS++G  K  +  +  +     +G+    +   +  +   LV         
Sbjct: 726 PEQPQDLLLVSQQGRVKLLAGQE--LQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASAQ 783

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIA--SRATKGVVIFSTAKDERVVSV 894
           N    +++ +  G L+R    ++ +   S + +G         E +V V
Sbjct: 784 NPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLVGV 832


>gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 448

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 241/473 (50%), Positives = 335/473 (70%), Gaps = 26/473 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + SD +++  I  ++I+ EM+ S+L YA++VI+ RA+PD+RDGLKPVHRR+L+ M  +G+
Sbjct: 1   MMSDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGI 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             +K Y K ARI GEV+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  
Sbjct: 61  TADKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ K +  L+ D+ K+T+D++ NYDGS +EP+VL AR+PN+LVNG  GIAVG
Sbjct: 121 AAMRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H LGEV+DG +A+  NPDI +  LME I GPDFPT  +ILGR+GI+ AY TGR
Sbjct: 181 MATNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLILGRSGIRRAYETGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI++R    IE+ S  ++ I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR
Sbjct: 241 GSIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDR 300

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+V+E++R A+A+V+LN LY++T+LQ+ F +NM++L   +P+   L   L  ++  +
Sbjct: 301 NGMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGEPQVLNLKQNLYHYLEHQ 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           + V+ RRT Y L KA  RAH+L GL IA+ +LDEV+ +IR S   + A++ LM+R     
Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMER----- 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                  LSE Q +AIL++RL RLTGL R+ I   + 
Sbjct: 416 ---------------------FGLSEKQAQAILDMRLQRLTGLEREKIEQNIK 447


>gi|224283379|ref|ZP_03646701.1| DNA topoisomerase IV subunit A [Bifidobacterium bifidum NCIMB
           41171]
 gi|311064619|ref|YP_003971344.1| DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313140533|ref|ZP_07802726.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
 gi|310866938|gb|ADP36307.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010]
 gi|313133043|gb|EFR50660.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171]
          Length = 890

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 265/896 (29%), Positives = 412/896 (45%), Gaps = 121/896 (13%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T H      + ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M 
Sbjct: 6   TTHQAYDPRQVQEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMG 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D
Sbjct: 66  EMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLALVDGHGNFGSLD 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+LVNGG G
Sbjct: 126 -DGPAASRYTEARLAPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGGSG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+ THNLGEVV     ++ +PD  L+ LM  + GPD+P G +I+GR GI+ AY
Sbjct: 185 IAVGMATNMATHNLGEVVAAAKHLMAHPDATLEELMRYVPGPDWPGGGIIIGRNGIREAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRG++  R ++H E  +  ++ IVVTE+P+ V    +LE+I+E V+ +++  I+   D
Sbjct: 245 ETGRGTLTTRSMTHFENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAID 304

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +D   G R+VIE+K G   + +L QL+R+T LQ  F++N VAL   +P    L  +L+ 
Sbjct: 305 LTDRHNGTRLVIEIKTGFDPNAVLAQLFRHTPLQDNFTMNNVALVDGRPHTMGLKEMLQV 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  R  VV RR+++   KA +R H++ GL +A+ ++DEV+++IR S + + A+  L+  
Sbjct: 365 WIDHRRIVVRRRSEFRRRKALERLHLVEGLLLAMIDIDEVIQVIRTSDDADAAKSRLIA- 423

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L +VQ + IL+LRL RLT + R ++  E + L
Sbjct: 424 -------------------------VFDLDDVQAQYILDLRLRRLTRMSRIELEAERDDL 458

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------ 534
              I+E   IL+S   L  ++  E+     E  TPRRT +++   D              
Sbjct: 459 KRRIEELERILASAQELDRVVVDEMDQAVAEYGTPRRTVLLDEAEDGTLTPVTPHGDDSV 518

Query: 535 -------------------------------------------REDMVVTVSHLGYVKRV 551
                                                       E   V +   G + R 
Sbjct: 519 NAAAMKAAAAAATLSSAEADVAAAAAARKAGEDAAAVAALQIDDEPCTVMLGASGTIARS 578

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
             +   A               +D +  +F  +T +S    +S G +    V  LP  + 
Sbjct: 579 TPAALDAWESRSTSDERTK---DDHIVSIFRTTTRSSYGLVTSAGRLVLAHVVELPALAA 635

Query: 612 QAR-----GKALINILSLNQGERITTIMPF-------PEDESSWNNLYVVFATKHGNVRR 659
             +     G     ++ + +                   D+       +   T+ G V+R
Sbjct: 636 SPQTNVAGGIPADELIGMTESTDPIPGEHVVAAIPMDQRDDDGPTPAPLAIGTRAGVVKR 695

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
                   +       + L   D +L       E+ ++        + F    +R   GR
Sbjct: 696 WNREAPTTM--DSWSVIDLKDGDSVLFAADAADEDRLVFIASDSSLLTFDAGNVRP-QGR 752

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G+ GI LA+G   I+  +V      +          SA   ++     +  +L    
Sbjct: 753 TAGGMAGIRLAEGCTAITFNVVPAGKIAWTYEEGDNGMFSASGAVVLTVAGDKDALPG-- 810

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                   +E G  K T    +    R   G+R+    K 
Sbjct: 811 ------------------------TENGAAKVTPLEMYPTKGRGTGGVRSQRFLKG 842


>gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33]
 gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33]
          Length = 447

 Score =  592 bits (1525), Expect = e-166,   Method: Composition-based stats.
 Identities = 239/429 (55%), Positives = 316/429 (73%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           K IT V+I DE+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K
Sbjct: 6   KEITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GIAVGMATNIP H
Sbjct: 126 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEV+DGC+A IDN  I +D LM+ I GPDFPT A+I GR GI +AY TGRG + +R  
Sbjct: 186 NLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALISGRKGIIDAYKTGRGKVYMRSK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R+VIE
Sbjct: 246 AEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
            KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV RRT
Sbjct: 306 CKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVVTRRT 365

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  +++ 
Sbjct: 366 IFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLER 425

Query: 434 IDDSSYTIG 442
               +    
Sbjct: 426 AGTDAARPE 434


>gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114]
 gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114]
          Length = 765

 Score =  591 bits (1524), Expect = e-166,   Method: Composition-based stats.
 Identities = 261/736 (35%), Positives = 389/736 (52%), Gaps = 40/736 (5%)

Query: 11  EEEKGITSVSITDEMQN----SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            +      V +++ ++      YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M ++ + 
Sbjct: 2   NDVSDTKPVDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLS 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
               + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PA
Sbjct: 62  STGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPA 121

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+   A  +L+ L ++ VDFR NYDG+  EPVVL A++PN+L NG  GIAVGM
Sbjct: 122 ASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGM 181

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGR 245
           ATNIP HN+ E+ D C+ +I  PD   D L++ + GPDFPTG  ++     I  AY TG+
Sbjct: 182 ATNIPPHNIAELCDACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGK 241

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G   +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K+I  +AD+RDES  
Sbjct: 242 GGFRLRCRWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESA- 300

Query: 306 QGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGILKAFVA 363
              R++IE + R    DV++  L+R   L+  FS+NM   ++G  P+  ++  +L+AF+ 
Sbjct: 301 DDIRMIIEPRSRSVDPDVLMGMLFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFLD 360

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R+EV+ RR+ + L K   R  VL G  IA  NLD V+ IIR+  +P   +  LM   W 
Sbjct: 361 HRQEVLQRRSTHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDP---KAALMAEDWG 417

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               + L +          S   + L+EVQ  AIL +RL  L  L   ++  E  +L  E
Sbjct: 418 RDHPRALNE---ADYVPPVSTDDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEE 474

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME--DEDCIVRE 536
                D+L +       I ++L + K +         RRT   E  +  +   E  I RE
Sbjct: 475 RAGLEDLLENPGLQWASITEQLRATKKQFGKDWDGGARRTTFSEAAVIEDVPIEAMIDRE 534

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V  S +G+V        RA          +  +D D    +F   T   +L F S G
Sbjct: 535 PITVVCSQMGWV--------RAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVFGSNG 586

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      LP G  +  G+ L  ++ L     I TI+          +  ++ A+  G+
Sbjct: 587 RFYTVSASSLPGG--RGMGEPLRLMIDLPNEAEIVTILT------HAPDRKLLVASSAGD 638

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                 +D +   R+GK  + +   D    +      + + +  +  + + FP+  +   
Sbjct: 639 GFVVPEADVVAQTRTGKQVLNVR-GDTRAMICKPVNGDTVAVVGENRKVLVFPLEDLPEM 697

Query: 717 AGRNSVGVRGISLAKG 732
            GR   GVR      G
Sbjct: 698 -GRG-KGVRLQKYKDG 711


>gi|240172097|ref|ZP_04750756.1| DNA gyrase subunit A [Mycobacterium kansasii ATCC 12478]
          Length = 1257

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 275/787 (34%), Positives = 425/787 (54%), Gaps = 92/787 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 550  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 609

Query: 191  PTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D           + +  L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 610  PPHNLRELADAVFWALDNYDADEETTLAAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 669

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  IA++ D+ S+R
Sbjct: 670  SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGIANIEDQGSER 729

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 730  VGVRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRYYVEHQ 789

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V++RRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++      
Sbjct: 790  LDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE------ 843

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 844  --------------------LLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 883

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GI++ EL  + D+    RRTRIV    D+ DED I RED+VVT++  
Sbjct: 884  DLEDILAKPERQRGIVRDELGEIVDKHGDDRRTRIVAADGDVSDEDLIAREDVVVTITET 943

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 944  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDWILFFTTQGRVYRAKAYE 1003

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V ATK+G V+++KL+DF
Sbjct: 1004 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATKNGLVKKSKLTDF 1060

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1061 DSNRSGGIVAINLRDNDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPM-GRATSG 1119

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1120 VQGMRFNADDRLLSLNVVREGT-------------------------------------- 1141

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++L  +  G+ KRT+  ++ +  R GKG+      +    G LV 
Sbjct: 1142 ---------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR--RGRLVG 1184

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
                +D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1185 ALIADDDSELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESEE 1244

Query: 904  DEAESTE 910
               E+ +
Sbjct: 1245 AIGETDD 1251



 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/130 (54%), Positives = 90/130 (69%), Gaps = 1/130 (0%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D    + I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDN-SAERIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 120 GNDPPAAMRY 129


>gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri]
          Length = 1132

 Score =  591 bits (1523), Expect = e-166,   Method: Composition-based stats.
 Identities = 253/799 (31%), Positives = 415/799 (51%), Gaps = 45/799 (5%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S++E+E + +   S+ D M   +  YA  +I  RA+PD+RDGLKPV RRILF M ++ +
Sbjct: 1   MSNNEKENELVY--SLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELRL 58

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
            +N  Y K ARI GEV+GKYHPHG+ ++YDA+ R++Q+W +R  LI+  GN GS+DGDP 
Sbjct: 59  TFNTSYKKSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDPA 118

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL + + FLL DL K TV F PN+D S QEPVVL A +PN+LVNG  GIA G
Sbjct: 119 AAMRYTETRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAAG 178

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
            ATNIP HNL E+++  +  I+ PD  +  L++ ++GPDFPTG +I G++GI  AY TG+
Sbjct: 179 YATNIPPHNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGGIIQGKSGILEAYQTGK 238

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I++R     E        +V+TEIPY+V K  +++KI ++   +  ++I ++RDE+DR
Sbjct: 239 GKIIVRSKIKFEN-----NALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDETDR 293

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G R+VIEL + A+ + +   L + T+LQ  ++ NMVA+   +P +  L  IL  +V  +
Sbjct: 294 EGLRIVIELGKQANVETVRKFLLKNTNLQISYNFNMVAIANKQPRQLGLKEILTHYVEHQ 353

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +EV+   +++ L +A+ R+ ++ GL   ++ LDEV+ +IR+S +   A   L+++     
Sbjct: 354 QEVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYSKDRSDAIHNLVKK----- 408

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                   +++Q  AI++LRL RLT      ++ E   L   I 
Sbjct: 409 ---------------------FGFTQIQAEAIVQLRLYRLTSTDILQLKAEQKELIATIA 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVS 543
           E   IL   ++L  +I  +L  +K +  + RR+ I   +  +E +  + I+ +D+ + +S
Sbjct: 448 ELKAILRDINKLNSVIIHQLELIKKKFASRRRSVIENEIEAIEIQKTETIIEKDLNIWIS 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY     L      +           +  D     F  +T   +L  +S G      V
Sbjct: 508 RDGY-----LKALENNQLARLVNEEFKRKPGDLWIADFQANTSDKILLITSKGNYVIIPV 562

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +++     +  G+ +  I  L   E+I +     +        Y++ ATK+G +++  + 
Sbjct: 563 YQIKTVRLRDIGEHINTISELPGEEKIISAFLLNDFN--KKEQYIMLATKNGMIKKTAVK 620

Query: 664 DFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           DF     S    A+ L + DE+++ +       +++TT  G  V++    I     R + 
Sbjct: 621 DFEATRISKALKAINLKNDDEVVASQLVGHHPYVVITTANGFIVKYHKKQIPTLGLRTA- 679

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV+ I+L   D VI+       +      +   K +S      S    + T L   +   
Sbjct: 680 GVKSINLR-DDVVINAGYCEDDNLVLITNLHTGKKISLTEIPTSTRPVKGTRLYKLNKDI 738

Query: 783 GNISEERCQELKLKEQFIL 801
             +              +L
Sbjct: 739 NELVRWTFLTKGKDILHML 757



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
            E I ++      E  IS     +   KEQ+I+  ++ G  K+T+  DF  + R  K ++
Sbjct: 574 GEHINTISELPGEEKIISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEAT-RISKALK 632

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           A ++        +VA   V  +  +++ +  G +++    +I      T GV   +   D
Sbjct: 633 AINLK---NDDEVVASQLVGHHPYVVITTANGFIVKYHKKQIPTLGLRTAGVKSINLRDD 689



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 89/244 (36%), Gaps = 14/244 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ ++ G ++  + +   ++             D  ++       + ILL T  G  V  
Sbjct: 504 IWISRDGYLKALENNQLARLVNEEFKR---KPGDLWIADFQANTSDKILLITSKGNYVII 560

Query: 709 PISAIRVFAGRNSVGVRGIS----LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           P+  I+    R+      I+    L   +++IS  ++   +      +   K+   ++  
Sbjct: 561 PVYQIKTVRLRDIGEH--INTISELPGEEKIISAFLLNDFNKKEQYIMLATKNGMIKKTA 618

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           +        S    +    N  E    +L     +++  +  GF        +       
Sbjct: 619 VKDFEATRISKALKAINLKNDDEVVASQLVGHHPYVVITTANGF-----IVKYHKKQIPT 673

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+R   V  IN    +V      ++D ++L+++  T  ++ + EI  ++R  KG  ++ 
Sbjct: 674 LGLRTAGVKSINLRDDVVINAGYCEDDNLVLITNLHTGKKISLTEIPTSTRPVKGTRLYK 733

Query: 885 TAKD 888
             KD
Sbjct: 734 LNKD 737



 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
           S    L + +  ++  L N+                     IL ++ KG       Y  +
Sbjct: 507 SRDGYLKALENNQLARLVNEEFKRKPGDLWIADFQANTSDKILLITSKGNYVIIPVYQIK 566

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVND----NDQIILVSDKGTLIRVPVNEIRIAS 874
                  G     +S++     +++ F +ND       I+L +  G + +  V +   A+
Sbjct: 567 TVRLRDIGEHINTISELPGEEKIISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDF-EAT 625

Query: 875 RATKGVVIFSTAKDERVVSVERI 897
           R +K +   +   D+ VV+ + +
Sbjct: 626 RISKALKAINLKNDDEVVASQLV 648


>gi|33864544|ref|NP_896103.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
 gi|33632067|emb|CAE06520.1| putative DNA topoisomerase chain A [Synechococcus sp. WH 8102]
          Length = 824

 Score =  590 bits (1522), Expect = e-166,   Method: Composition-based stats.
 Identities = 280/822 (34%), Positives = 427/822 (51%), Gaps = 62/822 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + S+++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVESIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LL+++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG VA+I  P++    L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLVALIRQPELSDSKLLELIPGPDFPTGGEVLLSSGLRDTYLVGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GIAHIEEVQPGKGHHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A    +L  L R T+LQS F   ++AL   +P + +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPAKVLADLQRRTALQSNFGAILLALVDGQPRQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+                     
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVDGLITALNNLQAVITMIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                +  D +S        + LSE Q  A+L + L RLTGL ++ +R EL  L  E + 
Sbjct: 402 -----EARDAASARASLMVRLDLSERQADAVLAMPLRRLTGLEQESLRQELEELQAERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  + QEL  +K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LRLLLDNRDQLLDAMVQELKGLKKRFSTPRRTRLVEGGDALMAERAASQRPNTELL--RQ 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS---------------VLF 591
                  +  R   +       +       +      +                   +L 
Sbjct: 515 QALEALPADARLLIQADGQVKVMSPPVLGRMHLSEPCAVGDHPSPAQVILPIEPSPRLLG 574

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY-VVF 650
            S+ G   +  + R          +       L  G     ++   E        + +  
Sbjct: 575 VSASG---RVALVRWEFAG----QQPGSLEKFLPSGLDGDPLIAILELPVGDGTEFSLGL 627

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G  +R  L+D + ++      +KL     + S   C + +D++L + +G+ +R P+
Sbjct: 628 LSSDGRFKRLPLADVLDLSGRATSVVKLKEGLSLCSAVICREHSDLVLVSSMGRLLRLPV 687

Query: 711 SA-IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +    GR + G   + L  G++++    +  A+ D    +   K     R  ++   
Sbjct: 688 NDSVLPKMGRLAQGPMTMRLLPGEELVGSLSIDVAETDPTLLLVSRK-GQMTRIDLTPLR 746

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                     +V  +  E+    L   +     V+++   KR
Sbjct: 747 RCQRGDLGIMAVVLSADEDSVAGLCSGDSLAGIVTDQ---KR 785



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 804 SEKGFGKRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           S  G  KR    D   +S R+        + +     +L +     ++  ++LVS  G L
Sbjct: 629 SSDGRFKRLPLADVLDLSGRATS---VVKLKEGL---SLCSAVICREHSDLVLVSSMGRL 682

Query: 863 IRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +R+PVN+  +    R  +G +       E +V    I  +E  
Sbjct: 683 LRLPVNDSVLPKMGRLAQGPMTMRLLPGEELVGSLSIDVAETD 725



 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 10/170 (5%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
            GD +I++  +   D               +R  ++   +      +   ++  +S    
Sbjct: 605 DGDPLIAILELPVGDGTEFSLGLLSSDGRFKRLPLADVLDLSGRATSVVKLKEGLSLCSA 664

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFP-- 846
              +     +L VS  G   R    D       R  +G     +        LV      
Sbjct: 665 VICREHSDLVL-VSSMGRLLRLPVNDSVLPKMGRLAQGPMTMRLLPGE---ELVGSLSID 720

Query: 847 VNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA-KDERVVSV 894
           V + D  ++LVS KG + R+ +  +R   R   G++    +  ++ V  +
Sbjct: 721 VAETDPTLLLVSRKGQMTRIDLTPLRRCQRGDLGIMAVVLSADEDSVAGL 770


>gi|124021719|ref|YP_001016026.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962005|gb|ABM76761.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9303]
          Length = 829

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 273/829 (32%), Positives = 432/829 (52%), Gaps = 55/829 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S R  +++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G++TVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  PD+  D L+ +I GPDFPTG  IL  TGI   Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  +VVTE+PYQ++KA  +EK+A+LV   +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A+ + +L  L+R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RRT + L K + R  V+ GL  A+  L  V+ +I+                     
Sbjct: 363 LTVIRRTNHALGKTKTRLEVVEGLITALNALQAVIAMIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                +  D ++        + L+E Q  A+L + L RLT L +  +R E   L  + ++
Sbjct: 402 -----EAADAAAARARLMVQLDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQGKQEQ 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT----- 541
              +L +R  +L ++ QEL  +K   + PRRTR+VEG  D+  E    +           
Sbjct: 457 LQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQA 516

Query: 542 ---VSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
              +   G +     S  +  + +  G+       +  D       +  +     +L  +
Sbjct: 517 LSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLGDGPSPARLILPIEPAPRLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G   +  + R          +       L  G    T++          NL +   + 
Sbjct: 577 NNG---RVALVRWEFAG----QQPGSLERFLPGGLEKETLINIFPLP-VDQNLSLGLLSS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SA 712
            G  +R  L + ++++      +KL     + S   C   +D++L + +G+ +R  + + 
Sbjct: 629 DGRFKRLPLEEVMELSGRAATIVKLKDGVVLKSAFICKANDDVILASSIGRVIRINVNND 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                G+ + G   + L   + V+   +   + ++         K        I      
Sbjct: 689 SMPLMGKLAQGPMTMRLLPEEMVVGAISCPPNCESTVLLVTRLGKFAKLLVSSIRVCQRG 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
                  +  + +  ++R  ++    + +  VS +G   R  + +  ++
Sbjct: 749 DLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQGRHGRIEAGELELT 797



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 9/158 (5%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I+    A     +     ++  R   +G             +E             +   
Sbjct: 563 ILPIEPAPRLLAVTNNGRVALVRWEFAGQQPGSLERFLPGGLEKETLINIFPLPVDQNLS 622

Query: 800 ILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +  +S  G  KR    +   +S R      A  + K+ +   L + F    ND +IL S 
Sbjct: 623 LGLLSSDGRFKRLPLEEVMELSGR------AATIVKLKDGVVLKSAFICKANDDVILASS 676

Query: 859 KGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSV 894
            G +IR+ V  + + +  +  +G +      +E VV  
Sbjct: 677 IGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMVVGA 714


>gi|33862278|ref|NP_893838.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640391|emb|CAE20180.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9313]
          Length = 829

 Score =  590 bits (1521), Expect = e-166,   Method: Composition-based stats.
 Identities = 271/816 (33%), Positives = 427/816 (52%), Gaps = 55/816 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ Y 
Sbjct: 3   EERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S R  +++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G++TVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  PD+  D L+ +I GPDFPTG  IL  TGI   Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTGIHETYLKGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  +VVTE+PYQ++KA  +EK+A+LV   +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A+ + +L  L+R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRIVVELRRDANPENVLGDLHRRTSLQSNFGAILLALVNGQPQQLSLRKLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V+RRT + L K + R  V+ GL  A+  L  V+ +I+                     
Sbjct: 363 LTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                +  D ++        + L+E Q  A+L + L RLT L +  +R E   L  + ++
Sbjct: 402 -----EAADAAAARARLMVQLDLNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQ 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT----- 541
              +L +R  +L ++ QEL  +K   + PRRTR+VEG  D+  E    +           
Sbjct: 457 LQFLLENRESMLEVLIQELRQLKKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQA 516

Query: 542 ---VSHLGYVKRVPLSVYR--AQRRGGKGRSGVVMRDED---FVTDLFIVSTHTSVLFFS 593
              +   G +     S  +  + +  G+       +  D       +  +     +L  +
Sbjct: 517 LSALPSDGRILIQQDSQVKVMSPQILGRLHLNEACKLSDGPSPARLILPIEPAPRLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G   +  + R          +       L  G    T++          NL +   + 
Sbjct: 577 NNG---RVALVRWEFAG----QQPGSLERFLPGGLEKETLINIFPLP-VDQNLSLGLLSS 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SA 712
            G  +R  + + ++++      +KL     + S   C   +D++L + +G+ +R  + + 
Sbjct: 629 DGRFKRLPIEEVMELSGRAATIVKLKDGVILKSAFICKANDDVILASNIGRVIRINVNND 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                G+ + G   + L   + V+   +   + ++         K        I      
Sbjct: 689 SMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIRICQRG 748

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +  + +  ++R  ++    + +  VS +G
Sbjct: 749 DLGEIGLTIKDSSRDQDRVVDICNGNRLVGLVSSQG 784



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I+    A     +     ++  R   +G             +E             +   
Sbjct: 563 ILPIEPAPRLLAVTNNGRVALVRWEFAGQQPGSLERFLPGGLEKETLINIFPLPVDQNLS 622

Query: 800 ILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           +  +S  G  KR    +   +S R      A  + K+ +   L + F    ND +IL S+
Sbjct: 623 LGLLSSDGRFKRLPIEEVMELSGR------AATIVKLKDGVILKSAFICKANDDVILASN 676

Query: 859 KGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            G +IR+ V  + + +  +  +G +      +E VV       +
Sbjct: 677 IGRVIRINVNNDSMPLMGKLAQGPMTMRLLPEEMVVGAVSCPPN 720


>gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum]
          Length = 498

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 273/525 (52%), Positives = 369/525 (70%), Gaps = 27/525 (5%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRRIL+ M ++G+   K Y KCARI GEV+GKYHPHG++++YDAL RMAQ
Sbjct: 1   PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+S+R +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ KDTV+F PN+DG  +
Sbjct: 61  DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP VL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG + +IDNP+  +  LM +I+G
Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180

Query: 223 PDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           PDFPTGA I+G++GI+ AY TG+G +++R  + IE+   +R +I+VTEIPYQVNKA ++E
Sbjct: 181 PDFPTGATIMGKSGIRAAYETGKGRVIVRAKAEIEE-ENNRHRIIVTEIPYQVNKAKLIE 239

Query: 283 KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
            IA+LV++K+IV I+DLRDESDR+G R+VIELK+ A+ +V+LN LY++T +Q  F V M+
Sbjct: 240 NIADLVKDKKIVGISDLRDESDREGMRIVIELKKDANPNVVLNLLYKHTKMQDTFGVIML 299

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           AL   +P+   +  +L  +++F++EV+ RRT + LNKA  RAH+L GL IA+ N+DEV+ 
Sbjct: 300 ALVNNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDEVIS 359

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           IIR S   E AR  LM+R                            LSE Q+ AILE+RL
Sbjct: 360 IIRGSKTSEIARNTLMER--------------------------FNLSEKQSTAILEMRL 393

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
            RLTGL RD I  E   L   I     IL+S  +LLG+IK ELL +K +    RRT I +
Sbjct: 394 RRLTGLERDKIEEEYAELMKLIDYLNSILASEEKLLGVIKDELLQIKTKYGDERRTSIEK 453

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            + +++ ED I  E++VVT++H GY+KR+    Y AQ+RGGKG  
Sbjct: 454 VVNEIDIEDLIQEEEVVVTLTHTGYIKRISADTYSAQKRGGKGIQ 498



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 15/158 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++S+   ++ ++I    +     RF +S       + S  +  + L      
Sbjct: 349 IALDNIDEVISIIRGSKTSEI---ARNTLMERFNLSE------KQSTAILEMRLRRLTGL 399

Query: 731 KGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + D++    A ++      +  +   + +    +      +     +  +S+E  ++E  
Sbjct: 400 ERDKIEEEYAELMKLIDYLNSILASEEKLLGVIKDELLQIKTKYGDERRTSIEKVVNEID 459

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
            ++L  +E+ ++T++  G+ KR S+  +    R GKGI
Sbjct: 460 IEDLIQEEEVVVTLTHTGYIKRISADTYSAQKRGGKGI 497


>gi|283797753|ref|ZP_06346906.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
 gi|291074428|gb|EFE11792.1| DNA gyrase, A subunit [Clostridium sp. M62/1]
          Length = 746

 Score =  590 bits (1520), Expect = e-166,   Method: Composition-based stats.
 Identities = 257/728 (35%), Positives = 405/728 (55%), Gaps = 30/728 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD   A IDNP++  + L+  + GPDFPTG +I  +  + + Y TG G I +R 
Sbjct: 182 HNLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGIIANKKDLASIYETGSGKIKLRA 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              +E  K   D++++V+TEIPY +  A + +    IAELV  K++ D+ D+ ++S+++G
Sbjct: 242 KMEVELGKRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ E
Sbjct: 302 IRIVLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVKGRPETLNLRGILKNYLDFQYE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+ + LL K  ++  +  GL  A   +D ++ ++R S N + AR  L+    +A   
Sbjct: 362 NNTRKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDARACLINGDTSA--- 418

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                +   +       G +  +E Q  AILE+RL +L GL    +  E      +IKE 
Sbjct: 419 -----IRFKTPELEEDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             ILS +  +  +IK++L ++K E   PRRT I +G   + DE  +   ++V  +   GY
Sbjct: 474 EKILSDKGTMDQVIKEDLAAIKREFACPRRTLIEDGKEAVYDESAVEVREVVFVMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + V  S Y   R             E+    +        +  F+  G +++ KV  +P
Sbjct: 534 SRIVDRSTYDRNRET----------IENENPHVICCLNTDRICLFTDAGVLHQVKVTDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           +G  + +G  + N+   +  +  T  +    + SS      +FAT+   ++R    +F  
Sbjct: 584 LGKLRDKGTPIDNLCKFDGTKEQTVFVT---NASSLQGKLFLFATRDAMLKRVPGEEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N     A KL   D ++SV+   + ++++L T  G  +RF +  I     +N+ GVRGI
Sbjct: 641 -NNRMVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEI-SVQKKNARGVRGI 698

Query: 728 SLAKGDQV 735
            L +G+ +
Sbjct: 699 KLGRGEAL 706



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 6/161 (3%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +   VI            D  + +   ++        D                 +    
Sbjct: 552 ENPHVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLRDKGTPIDNLCKFDGTKEQTVFVT 611

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               L+ +  L  +     KR    +F  +NR          +K+ E  +LV+V P ++ 
Sbjct: 612 NASSLQGKLFLFATRDAMLKRVPGEEFETNNR------MVAATKLQEGDSLVSVQPADEA 665

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +++L +D G  +R  ++EI +  +  +GV      + E +
Sbjct: 666 SEVVLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEAL 706



 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 64/194 (32%), Gaps = 9/194 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    + G  R    S + +   +          +E   V  C   + I L T  G   +
Sbjct: 525 VFVMDRFGYSRIVDRSTYDRNRETI--------ENENPHVICCLNTDRICLFTDAGVLHQ 576

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I +   R+  G    +L K D      + +   +    ++       A  + + G
Sbjct: 577 VKVTDIPLGKLRD-KGTPIDNLCKFDGTKEQTVFVTNASSLQGKLFLFATRDAMLKRVPG 635

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  E  +    ++           +   +   ++  ++ G   R +  +  +  ++ +G+
Sbjct: 636 EEFETNNRMVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGV 695

Query: 828 RATDVSKINEIGAL 841
           R   + +   +  +
Sbjct: 696 RGIKLGRGEALEQV 709


>gi|170017458|ref|YP_001728377.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
 gi|169804315|gb|ACA82933.1| DNA topoisomerase IV, A subunit [Leuconostoc citreum KM20]
          Length = 812

 Score =  589 bits (1519), Expect = e-166,   Method: Composition-based stats.
 Identities = 263/882 (29%), Positives = 430/882 (48%), Gaps = 96/882 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++Q+W +R  LI+  GN GS+D DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSIDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG+DTVD   N+D +  EP VL +R P++L+NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQDTVDMVLNFDDTTYEPTVLPSRIPSLLINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P+    ALM  I+GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPEAPQSALMRYIKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I +  G +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TAISELKGGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVAGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +  +A+ IL  L++ T LQ  ++ NMVA++  +P   +L   L+AF+AFR+EVV++R+
Sbjct: 303 LNKDTNANGILTYLFKKTDLQIAYNFNMVAIHDQRPVHVSLKQALEAFIAFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ R             
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLIAR------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E  +L  +I    ++++ 
Sbjct: 410 -------------FDFTQPQAEAIVTLQLYRLTNTDVTQLEEEFAALTEKINHLTEVMNE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
              L  +I+ E+ ++  +  + RR++I   + D  ++    I  ED+ V VS  GY KR 
Sbjct: 457 EMALKAVIRDEITAITQKYQSARRSQIEAEVEDLVIDKAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A  +         + D+D       ++T   +  F++ G V    V  LP    
Sbjct: 517 SIRSYKASDKDN------GLADDDLPVFEGQLNTTQHLFMFTNKGSVIYRPVHELPDSRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQIN 669
           +  G+     LS  + E    ++      +          T  G +++  LSD       
Sbjct: 571 KDTGEHFSQELSNWRTEEY--VIKVVPINTLEQGGAFTIVTNDGFIKQTTLSDMLPKAYK 628

Query: 670 RSGKIAMKLDSRDEILSVETCT---QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +A+KL + D  +          + D+LL ++ G  +RF + +I     R + GV+ 
Sbjct: 629 KKTSMAIKLKTDDSYVVNADYFETVGQQDVLLLSQHGVGLRFAVKSIPEIGARTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D + +   V +                                           
Sbjct: 688 MDLRNEDTIKAAVFVTN------------------------------------------- 704

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    + Q +  +++ G  K     +   S R+ KG+      K      +     
Sbjct: 705 ---------EAQRVAIMADNGAFKYMPVSEITRSKRANKGLL-IFTQKKTVAYHVATATI 754

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +N  D  + +++ +     + +++ + + R   G  +    K
Sbjct: 755 LNIEDTALEILTTRWQKQELQLSDYKPSQRVGNGQYVVDVKK 796



 Score = 52.1 bits (123), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 14/106 (13%)

Query: 802 TVSEKGFGKRTSSYD-----FRISNRSGKGIRATDVSKINEIGALVAV--FPVNDNDQII 854
            V+  GF K+T+  D     ++          +  +    +   +V    F       ++
Sbjct: 607 IVTNDGFIKQTTLSDMLPKAYKKK-------TSMAIKLKTDDSYVVNADYFETVGQQDVL 659

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           L+S  G  +R  V  I      T GV       ++ + +   +   
Sbjct: 660 LLSQHGVGLRFAVKSIPEIGARTAGVKAMDLRNEDTIKAAVFVTNE 705


>gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
 gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389]
          Length = 736

 Score =  589 bits (1518), Expect = e-166,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 390/760 (51%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++     +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  ++  +M  I+GPDFPTG +I+ ++  I +AY TGRGS  +
Sbjct: 182 PHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   R     +++  L++ T+L+S   +NM  +     P+   ++ +L+ F++ R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +MQR        
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEP---KAIMMQR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I  E ++L  +     
Sbjct: 410 ------------------FQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  ++K+E+ +V+ +         RRT   +       ++    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILIISSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N    I    P         +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNNDITEILVYKP---------DHLLLLASSIGKGFVV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   +SGK  M +      ++       + +    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKSGKQIMNVPDGHTCIACLPVNG-DSVACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNREDGLSWNSGGKVKLEKN 710


>gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
 gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101]
          Length = 773

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 257/747 (34%), Positives = 384/747 (51%), Gaps = 43/747 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    SD +      S  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDITDPSDLDPRN--VSEPLRLALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG+  EPVVL A++PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  P+   D L+  + GPDFPTG +I      I N
Sbjct: 179 GIAVGMATNIPPHNISELVDACIHLIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIAN 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R   ++E       QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+
Sbjct: 239 AYRTGKGGFRLRCRWNVEDLGRGVWQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R++IE + +    +V++  LYR + L+  FS+NM  L +G  P+  ++  +
Sbjct: 299 RDESAE-DIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV+ RR+ + L K   R  VL G  IA  NLD V+ IIR+  +P   +  L
Sbjct: 358 LRAFLDHRREVLQRRSAHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDADP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M   W     +   +                L+E+Q  AIL +RL  L  L   ++  E 
Sbjct: 415 MAEDWGKKHSRATDE---SDYVPPAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQ 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----------RRTRIVEGLLDM 527
           + L  E     D+L S +     I ++L + K +              RRT   E     
Sbjct: 472 SELMAERAGLEDLLDSEALQWDSIIEQLRATKKQFGKDWKLDGVNVGLRRTTFAEAGEIE 531

Query: 528 ED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +   E  I RE + V  S +G++        RA          +  +D D    +F   T
Sbjct: 532 DVPLEAMIDREPITVVCSEMGWI--------RAMTGHIDLNRELKFKDGDGPRFVFHAET 583

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +L F S G  Y      LP G  +  G+ L  ++ L    +        +       
Sbjct: 584 TDRLLVFGSNGRFYTIGAVSLPGG--RGMGEPLRLMVDLPNDVQ------IVDIFIHKPG 635

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++ A+  G+       + +   RSGK  + +    + +       E  + +  +  + 
Sbjct: 636 RKLLVASSAGDGFVVPEDEVLAQTRSGKQVLNVRGDAKAMICAPIKGEA-VAVVGENRKV 694

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKG 732
           + F +  +    GR   GVR      G
Sbjct: 695 LVFGLDELPEM-GRG-KGVRLQKYKDG 719


>gi|289178865|gb|ADC86111.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 890

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 266/842 (31%), Positives = 402/842 (47%), Gaps = 91/842 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + E+ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  
Sbjct: 12  DPRQVEEHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLP 71

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 72  TRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL +  PN+LVNG  GIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LM+ + GPD+P G +I+GR GI++AY TGRG 
Sbjct: 191 TNMATHNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGIRDAYETGRGV 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R  +H+E  +  ++ IVVT++PY V    +LE+I+E V+  ++  I+   D +D   
Sbjct: 251 VTTRSATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHN 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK G     +L QL+++T LQ  F++N VAL   +P    L  +L  ++  R 
Sbjct: 311 GTRIVIELKTGFDPAAVLAQLFKHTPLQENFAINNVALVNGRPHTLGLRSLLDVWIEHRR 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR+++   KA DR H++ GL +A+ ++DEV+R+IR S + E A+  LM R      
Sbjct: 371 GVIRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSR------ 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++ +E + L   I E
Sbjct: 425 --------------------FSLDDIQAQYILDLRLRRLTKMSRIELESERDELQSSITE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI-------------------------- 520
              IL S + L G++  E+        TPRRT +                          
Sbjct: 465 LERILGSAALLDGVVIDEMDKAVATYGTPRRTVLLDEGDDGRLVPVVAHGDDMPSDAALD 524

Query: 521 -----------------VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
                                 +  +   I  E  V+ +S  G + R+ +          
Sbjct: 525 AARHAENVLDAADAVAAARKAGETAEALRIEDEPCVIALSASGLIARMSIDA--LTIWAK 582

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP--IGSPQARGKALINI 621
           +G        +D +  L    T       +S G +    V  LP    +        I  
Sbjct: 583 RGAHTEKREPDDVIVSLMPARTRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEA 642

Query: 622 LSLNQGERITTIMP-------------FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
             L      T  +P               +D+++     V   T++G V+R        +
Sbjct: 643 TELLTSTESTDPVPGERVIATLALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTM 702

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                  + L   DE+L       ++  +  +     + +    +R   GR + G+ GI 
Sbjct: 703 --DSWSIIDLKDGDELLVAADAHDDDRFVFVSSDSSLLTYEARNVRP-QGRTAAGMAGIH 759

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           LA G  V+S A+V HAD ++ +               +        +      E      
Sbjct: 760 LADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSPASGAVVLTVAGDVDALPGTENGWRRS 819

Query: 789 RC 790
           R 
Sbjct: 820 RH 821



 Score = 46.3 bits (108), Expect = 0.025,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 44/256 (17%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E         E  ++  +  G   R  I A+ ++A R +           D ++S+    
Sbjct: 547 ETAEALRIEDEPCVIALSASGLIARMSIDALTIWAKRGAH---TEKREPDDVIVSLMPAR 603

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          ++    L + +     SL         ++     +    E+ I T
Sbjct: 604 TRADYALVTSAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIAT 663

Query: 803 V---------------------SEKGFGKR------TSSYDFRISNRSGKGIRATDVSKI 835
           +                     +  G  KR      T+   + I           D+   
Sbjct: 664 LALRDTVGQDDTAAQLPPVGLGTRNGIVKRWNRESPTTMDSWSI----------IDLKDG 713

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +E+  LVA    +D+D+ + VS   +L+      +R   R   G+     A    V+S  
Sbjct: 714 DEL--LVAADA-HDDDRFVFVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCA 770

Query: 896 RIRESEIV-DEAESTE 910
            +  +++   +AE  +
Sbjct: 771 VVAHADVEWHDAEHDD 786


>gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
 gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035]
          Length = 768

 Score =  589 bits (1517), Expect = e-165,   Method: Composition-based stats.
 Identities = 264/742 (35%), Positives = 390/742 (52%), Gaps = 38/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +   + + E    S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDLLDDPNMQPEA--VSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L +D VDFR NYDG+ +EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPVVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HN+ E++D C+ +I +PD   D L++ I GPDFPTG  ++     I  
Sbjct: 179 GIAVGMATNIPPHNIAELIDACLHLIKSPDARDDTLLQYIPGPDFPTGGVIVEPPESIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++E+IAEL++ +++  +AD+
Sbjct: 239 AYLTGRGAFRLRCKWELEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R+V+E + +    +V++  +YR + L+  FS+NM  L +G  P+  +L  +
Sbjct: 299 RDESA-DDVRLVLEPRSKNVDPEVLMGMMYRNSELEVRFSLNMNVLIDGVTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+ FR++V++RR+ + + K   R  VL GL IA  NLD V+ IIR+  +P   +  L
Sbjct: 358 LRAFLDFRQQVLLRRSVHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDEDP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+  W  +  + + +            G   L+EVQ  AIL +RL  L  L   ++R E 
Sbjct: 415 MREDWGRTVPRAMSEADYVPPPPTAEAG---LTEVQAEAILNMRLRSLRRLEEMELRAER 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--E 530
           ++L  E     D+L   S     +  +L  VK           RRT+  E     +   E
Sbjct: 472 DTLMAERAGLEDLLDDVSLQWAAVADQLKEVKKTFGKTHPIGARRTQFAEAGSVEDVPLE 531

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA          +  +D D    +F   T   +L
Sbjct: 532 AMIDREPITVVCSQMGWI--------RAMTGHLDLSRELKFKDGDGPRFMFHAETTDRIL 583

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G        L+  L    G          +         ++ 
Sbjct: 584 VFGSNGRFYTLSASNLPGGRGMGEPLRLMVDLPNEAG--------IVDLLIHKPGRKLLV 635

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + I   RSGK  + L      L     T  + +       + + F +
Sbjct: 636 ASDAGDGFIVPEEEVIAQTRSGKQVLNLKEPARALVCRPVTG-DHVACVGDNRKVLVFAL 694

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +    GR   GVR      G
Sbjct: 695 DELPEL-GRG-KGVRLQKYKDG 714



 Score = 42.5 bits (98), Expect = 0.32,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 64/232 (27%), Gaps = 19/232 (8%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V++          R  + A      D  L      +   ++  +++G         IR  
Sbjct: 502 VKKTFGKTHPIGARRTQFAEAGSVEDVPLEAMIDREPITVVC-SQMGW--------IRAM 552

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +  R +    GD    M      D           +  +   L  G         
Sbjct: 553 TGHLDLS-RELKFKDGDGPRFMFHAETTDRILVFGSNGRFYTLSASNLPGGRGMGEPLRL 611

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                      +    +    + +L  S+ G G      +     RSGK +         
Sbjct: 612 MVDLPNEAGIVDLL--IHKPGRKLLVASDAGDGFIVPEEEVIAQTRSGKQVLNLKEPAR- 668

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              ALV   PV   D +  V D   ++   ++E+    R  KGV +      
Sbjct: 669 ---ALV-CRPVT-GDHVACVGDNRKVLVFALDELPELGR-GKGVRLQKYKDG 714


>gi|145221415|ref|YP_001132093.1| DNA gyrase, A subunit [Mycobacterium gilvum PYR-GCK]
 gi|315441703|ref|YP_004074582.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
 gi|145213901|gb|ABP43305.1| DNA gyrase subunit A [Mycobacterium gilvum PYR-GCK]
 gi|315260006|gb|ADT96747.1| DNA gyrase subunit A [Mycobacterium sp. Spyr1]
          Length = 1261

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 274/787 (34%), Positives = 427/787 (54%), Gaps = 93/787 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN+
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFVPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 191  PTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     +DN     +  LDA+ E ++GPDFPT  +I+G  GI + Y TGRG
Sbjct: 612  PPHNLRELAEAVYWCLDNHEADEEATLDAVCERVKGPDFPTYGLIVGSQGIDDTYKTGRG 671

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI +RGV  IE+ +  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR
Sbjct: 672  SIRMRGVVEIEEDARGRTSLVITELPYQVNHDNFITSIAEQVRDGKLTGISNIEDQSSDR 731

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 732  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRHYVNHQ 791

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +IR S   E AR  L++      
Sbjct: 792  LDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIE------ 845

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 846  --------------------LLDIDEIQAQAILDMQLRRLAALERQRIVDDLAKIEAEIA 885

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 886  DLEDILAKPERQRAIVHDELKEIVDKYGDDRRTRIIPADGDVADEDLIAREEVVVTITET 945

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 946  GYAKRTKSDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYD 1005

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++++L DF
Sbjct: 1006 LPEASRTARGQHVANLLAFQPEERIAQVIQLKTYE---DAPYLVLATRNGLVKKSRLVDF 1062

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C+ ++D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1063 DSNRSGGIVAVNLRDGDELVGAVLCSADDDLLLVSAKGQSIRFSATDEALRPM-GRATSG 1121

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+   + DQ++S+ +V                                          
Sbjct: 1122 VQGMRFNEEDQLLSLNVVREGT-------------------------------------- 1143

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++L  +  G+ KRT+  ++    R GKGI      +    G LV 
Sbjct: 1144 ---------------YLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRR--RGTLVG 1186

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES-EI 902
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+ + 
Sbjct: 1187 ALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDS 1246

Query: 903  VDEAEST 909
             DE E+ 
Sbjct: 1247 TDEVETD 1253



 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 90/130 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
 gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252]
          Length = 775

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/774 (35%), Positives = 412/774 (53%), Gaps = 74/774 (9%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74
           +  + + +  +  YL +A++VI  RA+PD+RDGLKPV RRIL+ M Q + +  + +Y K 
Sbjct: 4   VEVIPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A I GEVMGKYHPHG+AAIY+A+ RMAQD+SLR  L++G GNFGS+DGD  AA RYTE R
Sbjct: 64  ATIVGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L+  A  LL++L + TV  RPN+DG+  EPVVL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 124 LRPLAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHN 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRG 252
           LGEV+D  + +ID P+  L+ ++   I+GPDFPTG  +L  R  +   Y TG G I +RG
Sbjct: 184 LGEVIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRG 243

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +E     + +IV+T IPY + KA ++EKIAE +   ++  ++D+RDES     R+V+
Sbjct: 244 EYKLE----GKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDES-TDEVRIVL 298

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY------KPERFTLIGILKAFVAFRE 366
           EL+RGA  +  +  L+R+T LQ+ F VN+  L          P +  L+ +L+AF+ FR 
Sbjct: 299 ELRRGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRM 358

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVVVRR +Y L +   R H+L G       LDE +RIIR + +   A + LM R      
Sbjct: 359 EVVVRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L +VQ  AILE +L +L+ L  + IR EL     +  E
Sbjct: 413 --------------------FQLDDVQADAILETKLYKLSRLEIEAIRQELEEKERQAAE 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
              +L+  +   G+I++EL ++K +    RRT I       +   E  IV ED+ V V+ 
Sbjct: 453 LRALLADEAARWGLIREELKAIKKQFADARRTVIAGPDEGFEYNQEAYIVDEDVYVIVTR 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKR                  + +R+ D V  +   ST  +V FF++ G  Y  ++ 
Sbjct: 513 DGWVKRQRSYT---------DVQSIRVREGDTVGWVLPGSTRATVGFFTNYGRCYTTRID 563

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPE-------------------DESSWNN 645
            LP       G  +  +   +  ER+  ++ F E                    E     
Sbjct: 564 SLPST--TGYGDPVQKLFDFSDRERVVGVVVFDERALPRPVPEPEVEPALFENGEQEAPR 621

Query: 646 LYVVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           ++VV  T+ G   R  +  F +   ++G++ M+L+  DE+L VE    + ++ L ++ G 
Sbjct: 622 VHVVAVTRKGQTLRIPIDGFREPSTKNGRLFMRLEKGDEVLGVEVAAGDENVCLASREGY 681

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            + FP+  I       + GV  + L +GD+V+   +   A    +      +  
Sbjct: 682 VLIFPVHQIPPVKS-AAKGVIAMRLGRGDEVLGFTLASAAREGLEVETSRGRRE 734



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 90/278 (32%), Gaps = 43/278 (15%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
             + ++    +    V  T+ G V+R       Q + +   ++++   D +  V   +  
Sbjct: 493 FEYNQEAYIVDEDVYVIVTRDGWVKR-------QRSYTDVQSIRVREGDTVGWVLPGSTR 545

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   T  G+C    I ++    G      +    +  ++V+ + +             
Sbjct: 546 ATVGFFTNYGRCYTTRIDSLPSTTGYGDPVQKLFDFSDRERVVGVVV------------- 592

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                           +E    +     E   +     E +     ++ V+ KG   R  
Sbjct: 593 ---------------FDERALPRPVPEPEVEPALFENGEQEAPRVHVVAVTRKGQTLRIP 637

Query: 814 SYDFR--ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
              FR   +             ++ +   ++ V     ++ + L S +G ++  PV++I 
Sbjct: 638 IDGFREPSTKNGRL------FMRLEKGDEVLGVEVAAGDENVCLASREGYVLIFPVHQIP 691

Query: 872 IASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
               A KGV+     + + V+       +    E E++
Sbjct: 692 PVKSAAKGVIAMRLGRGDEVLGFTLASAAREGLEVETS 729


>gi|313678723|ref|YP_004056463.1| DNA topoisomerase IV subunit A [Mycoplasma bovis PG45]
 gi|312950625|gb|ADR25220.1| DNA topoisomerase IV, A subunit [Mycoplasma bovis PG45]
          Length = 861

 Score =  588 bits (1516), Expect = e-165,   Method: Composition-based stats.
 Identities = 233/810 (28%), Positives = 406/810 (50%), Gaps = 40/810 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +    I   ++   + + +  Y+  VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKKKEQQLNDLLSKIVQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ G+V+GKYHPHG+++IYDA+ RM Q+W +   L+E  GN GS+
Sbjct: 61  YDLGLQHNKPFKKSARVVGDVIGKYHPHGDSSIYDAMVRMGQEWKMGHTLVEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + A +++ D+ K+TV F PN+D S +EPVV+    PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEARLSEIADYVIGDIKKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A I NP I+L  + +II+GPDFPTG VI G  GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDAAIAKIKNPAIELSKIAKIIQGPDFPTGGVIYGTDGIHEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  G+G I +    ++  +    + I +TEIPY V K+ ++ +I  +V  + +  + +++
Sbjct: 241 FERGKGRITLASRYNVY-SDNKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLIEVK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++DR G  ++I L +  + +VI+N L+  T ++  ++ N V ++ + P+   +  +L A
Sbjct: 300 DQTDRNGINILITLDKNVNENVIVNYLFLKTQMRIYYNYNNVVIDNHTPKTMGISALLDA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   ++V V+  ++ L K + R  +++G        D+V+ +IR S N   +++ ++  
Sbjct: 360 YLKHVKDVKVKTIEFDLIKYKTRLEIVIGFLKVAKITDKVIEVIRKSEN---SKQGVIDN 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +A                         +  Q  AI ELRL +L+         E   L
Sbjct: 417 LMSA----------------------FDFTLNQATAIAELRLYKLSKTDEHTFILEKQEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDM 538
             +IK+C  +L++       +      +K +    RRT   I +    +  ED +  E++
Sbjct: 455 EEKIKQCELLLTNPDEFNNYLVSLFRDLKHKFGRIRRTSIEIEQINSSVNQEDLVKDEEV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K+V    Y +        +   ++++D +    + S+   +L F++LG  
Sbjct: 515 FLGISKFGYIKKVSKKTYESN-----LITTYGIKEDDNILFYDLASSLDKLLLFTNLGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L + + L+ GE I +++   + + +    YV   TK G  +
Sbjct: 570 AYLPVFKVNESKWKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVTN---YVCMFTKKGQGK 626

Query: 659 RNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L DF     S   +AMKL + DE++S +      D+LL TK      +  + +    
Sbjct: 627 KVLLKDFDVSRFSKTFMAMKLKNDDELISAKLSNGLKDVLLITKNNFASLYSENDV-PIY 685

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  S G +   LA GD+++S  +V   D+           +     + +   +       
Sbjct: 686 GLKSNGNKACYLASGDELVSFTVVKPNDSVALVSQSNKIRLINVSEISTVSKQNKGVPIF 745

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKG 807
                 N   +    L   E  +L V+ +G
Sbjct: 746 SKGRLNNAIVQCDPLL--NETKLLLVNNQG 773



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 94/253 (37%), Gaps = 11/253 (4%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              +++   +    +  +K G +++     +     +      +   D IL  +  +  +
Sbjct: 502 SVNQEDLVKDEEVFLGISKFGYIKKVSKKTYES---NLITTYGIKEDDNILFYDLASSLD 558

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDER 751
            +LL T LG     P+  +         G+     + L+ G++++S+  V   D      
Sbjct: 559 KLLLFTNLGNYAYLPVFKVNESK-WKEFGIHLSDFVDLSSGEEIVSVIKVSDFDVTNYVC 617

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +   K    +  L   D    +       ++ N  E    +L    + +L +++  F   
Sbjct: 618 MFTKKGQGKKVLLKDFDVSRFSKTFMAMKLK-NDDELISAKLSNGLKDVLLITKNNFASL 676

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
            S  D  I      G +A  ++       LV+   V  ND + LVS    +  + V+EI 
Sbjct: 677 YSENDVPIYGLKSNGNKACYLA---SGDELVSFTVVKPNDSVALVSQSNKIRLINVSEIS 733

Query: 872 IASRATKGVVIFS 884
             S+  KGV IFS
Sbjct: 734 TVSKQNKGVPIFS 746


>gi|88809359|ref|ZP_01124867.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
 gi|88786578|gb|EAR17737.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7805]
          Length = 821

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/817 (33%), Positives = 424/817 (51%), Gaps = 49/817 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD+RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHEGLLDEIGNDTVDFANNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A++  PD+  D L+++I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALVREPDLSNDKLLKLIPGPDFPTGGEVLLGSGVRDTYLRGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H+E+         R  ++VTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR+
Sbjct: 243 GVAHVEEVQLGKGRHKRNAVIVTELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R TSLQS F   M+AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQPQQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L KA DR  V+ GL  A+ +L  V+ +I+                     
Sbjct: 363 LTLIRRTTHALRKAEDRLEVVEGLITALQSLQRVIAMIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                +  D ++        + LSE Q  A+L + L RLTGL R+ +R E   L  + + 
Sbjct: 402 -----EAQDAAAARASLMVHLDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAQRQR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV-----T 541
              +L +R +LL  + +EL  +K    TPRRTR+VEG   +  E    +           
Sbjct: 457 LKLLLDNRDQLLDALTKELRQLKKRFATPRRTRLVEGGDHLLAERAANQRPNAELQRRQA 516

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED--------FVTDLFIVSTHTSVLFFS 593
           +  L    R+ +      +       G +  +E             +  +     +L  +
Sbjct: 517 LDALPPDSRILIQDDGQVKVISPQLMGRLHLNEPTALGDEPSPARVILPIKPVAKLLAVT 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G V     W      P +  + L   L  +    +  +     D +      +   + 
Sbjct: 577 ASGRVA-LIRWEFAGQQPGSLERFLPTALQGDPVVSVLQLPDADADSNKAAVSSLGLLSS 635

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  + + + ++      +KL    E+ +   C +   + L + LG+ +  P++  
Sbjct: 636 DGRFKRLPMQELLDLSGRAASVVKLKEGVELKTAVICREGGTLSLISDLGRVLPLPVTED 695

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG--DTE 770
                G+ + G   + L  G+ +I+         D          +              
Sbjct: 696 NLPLMGKLAQGPVTMRLLPGETLIAAVATDPEQQDPLLLFSRHGRIKPLSLDTVRLCQRG 755

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +  +      +GN  E+R     +    +  V+  G
Sbjct: 756 NLGVIGWQPEQDGNEGEDRLCAACVGSGLVGIVTSSG 792


>gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
 gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36]
          Length = 775

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 259/747 (34%), Positives = 387/747 (51%), Gaps = 43/747 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +D +         +   + + YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 3   MSDVTTPADPDSRNSSEP--LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 61  RELRLNSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG+  EP VL A++PN+L NG  
Sbjct: 121 DGDNPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L++ + GPDFPTG +I      I N
Sbjct: 181 GIAVGMATNIPPHNISELVDACIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIAN 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R     E       QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+
Sbjct: 241 AYRTGKGGFRLRCRWETEDLGRGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDV 300

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R++IE + +    +V++  LYR + L+  FS+NM  L +G  P+  ++  +
Sbjct: 301 RDESA-DDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEV 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV+ RR+ Y + K   R  VL G  +A  NLD V+ IIR+  +P++A   L
Sbjct: 360 LRAFLDHRREVLQRRSTYRMEKIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSA---L 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M   W    ++ + +           +    LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 417 MAEDWGKDHVRAMDEASYVPPAPSAENS---LSEVQADAILNMRLRSLRRLEEIELLREQ 473

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----------RRTRIVE--GLL 525
            +L  E     D+L +       I  +L   K +              RRT   E   + 
Sbjct: 474 AALMEERSGLEDLLENEGTQWDTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIE 533

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           ++  E  I RE + V  S +G++        RA          +  +D D    +F   T
Sbjct: 534 EVPLEAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAET 585

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +L F S G  Y      LP G  +  G+ L  ++ L    +I  I+           
Sbjct: 586 TDRLLVFGSNGRFYTVSASTLPGG--RGMGEPLRLMVDLPNEVQIVDIL------IHKAG 637

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++ A+  G+       D +   R GK  + +    + +     T  + + +  +  + 
Sbjct: 638 RKLLVASSAGDGFIVPEDDVLAQTRGGKQVLNVRGDAKAMICAPVTG-DAVAVVGENRKV 696

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKG 732
           + F +  +    GR   GVR      G
Sbjct: 697 LVFGLDELPEM-GRG-KGVRLQKYKDG 721


>gi|120401035|ref|YP_950864.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
 gi|119953853|gb|ABM10858.1| DNA gyrase subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 1262

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 272/787 (34%), Positives = 426/787 (54%), Gaps = 92/787 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN+
Sbjct: 552  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNM 611

Query: 191  PTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     ++N     +  L+A+ E ++GPDFPT  +I+G  GI + Y TGRG
Sbjct: 612  PPHNLRELAEAVYWCLENYEADEEATLEAVCERVKGPDFPTHGLIVGSQGISDTYTTGRG 671

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI +RGV  IE+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR
Sbjct: 672  SIRMRGVVEIEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 731

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +V  +
Sbjct: 732  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVNHQ 791

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   E AR  L++      
Sbjct: 792  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASQTVEIARSGLIE------ 845

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 846  --------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 885

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 886  DLEDILAKPERQRAIVHDELKELVDKYGDDRRTRIIPADGDVADEDLIAREEVVVTITET 945

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 946  GYAKRTKSDLYRSQKRGGKGVQGAGLKQDDIVNHFFVCSTHDWILFFTTQGRVYRAKAYD 1005

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++++L DF
Sbjct: 1006 LPEASRTARGQHVANLLAFQPEERIAQVIQLKSYE---DAPYLVLATRNGLVKKSRLVDF 1062

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C+ E+D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1063 DSNRSGGIVAVNLRDGDELVGAVLCSAEDDLLLVSAKGQSIRFSATDEALRPM-GRATSG 1121

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+   + DQ++S+ +V                                          
Sbjct: 1122 VQGMRFNEEDQLLSLNVVRE---------------------------------------- 1141

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRT+  ++    R GKGI      +    G LV 
Sbjct: 1142 -------------DTYLLVATSGGYAKRTAIEEYSAQGRGGKGILTIQYDRR--RGTLVG 1186

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+D+ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E+   
Sbjct: 1187 ALIVDDDTELYAITSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLIAIARNAEAGDS 1246

Query: 904  DEAESTE 910
             +  +T+
Sbjct: 1247 TDEVNTD 1253



 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/130 (54%), Positives = 89/130 (68%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +    E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGGEAGDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  FDSGFRPDRGHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|116071803|ref|ZP_01469071.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
 gi|116065426|gb|EAU71184.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. BL107]
          Length = 820

 Score =  588 bits (1515), Expect = e-165,   Method: Composition-based stats.
 Identities = 278/813 (34%), Positives = 429/813 (52%), Gaps = 59/813 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LL+++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP
Sbjct: 123 TRLAPIAHQALLEEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVDG +A+I  P +  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +R
Sbjct: 183 PHNLGEVVDGLIALIRQPSLSDERLLELIPGPDFPTGGEVLLSSGLQDTYLQGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+H E+         R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR 
Sbjct: 243 GVAHTEEVQLGKGRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R A  D +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDAEPDKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRT + L K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R      
Sbjct: 363 LTLIRRTSHALRKTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVR------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q  A+L + L RLTGL ++ +R E+++L  E + 
Sbjct: 417 --------------------LDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLREERER 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L +R +LL  +  EL ++K    TPRRTR+VEG   +  E    +      +    
Sbjct: 457 LKLLLENRDQLLDAMVGELKTLKKRFSTPRRTRLVEGGDALIAERAASQRPNTELLRQQA 516

Query: 547 YV-----KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--------LFIVSTHTSVLFFS 593
                   R+ +      +       G +   +             +  +     +L  S
Sbjct: 517 LAALPGDGRLLIQADGQVKIVTPQVLGRLHFGDPCPLSDAPSPAQVILPIEPPPRLLAIS 576

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS-WNNLYVVFAT 652
           + G   +  + R          +  +    L  G     I+          ++L +   +
Sbjct: 577 ANG---RVALVRWEFAG----QQPGVLERFLPSGLEGEPIVALAPLPMQESSDLSLGLLS 629

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS- 711
             G  +R  L++ + ++      +KL    ++ +   C + +D++L + +G+ +R PI+ 
Sbjct: 630 SDGRFKRLPLAEVLDLSGRATSVVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPINE 689

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    GR + G   + L  G+Q+I     L         +         R  +S     
Sbjct: 690 DVLPLMGRLAQGPMTMRLLPGEQLIGALCPLEP-----TVVLVSGQGQFARIDLSSIRSS 744

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                   +++     +R   +      I  VS
Sbjct: 745 QRGDLGSMAIQITSDTDRITGMTEANGLIGIVS 777



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 810 KRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           KR    +   +S R+        V K+ +   L A     ++  +ILVSD G ++R+P+N
Sbjct: 635 KRLPLAEVLDLSGRATS------VVKLKDGVQLKAAVICREHHDLILVSDIGRMLRLPIN 688

Query: 869 E--IRIASRATKGVVIFSTAKDERVVSV 894
           E  + +  R  +G +       E+++  
Sbjct: 689 EDVLPLMGRLAQGPMTMRLLPGEQLIGA 716



 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 62/169 (36%), Gaps = 10/169 (5%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G+ ++++A +   ++              +R  ++   +      +   ++  +  +  
Sbjct: 605 EGEPIVALAPLPMQESSDLSLGLLSSDGRFKRLPLAEVLDLSGRATSVVKLKDGVQLKAA 664

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVF-PV 847
              +     IL VS+ G   R    +    +  R  +G     +        L+    P+
Sbjct: 665 VICREHHDLIL-VSDIGRMLRLPINEDVLPLMGRLAQGPMTMRLLPGE---QLIGALCPL 720

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVE 895
                ++LVS +G   R+ ++ IR + R   G +    T+  +R+  + 
Sbjct: 721 EPT--VVLVSGQGQFARIDLSSIRSSQRGDLGSMAIQITSDTDRITGMT 767


>gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2]
 gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2]
          Length = 745

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/743 (33%), Positives = 388/743 (52%), Gaps = 63/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M    +   +     I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL  M
Sbjct: 1   MATRTLPPGD---GHIEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++  + + K AR+ G+V+GK+HPHG+ ++YDAL R+AQD++ R  L++GQGNFG+V
Sbjct: 58  RQLRLDPGQGFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD + +D VDFRP YDGS +EP VL A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTEARLTETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E++D  + +ID+P+     L++ + GPDFPTG V +    G+  
Sbjct: 178 GIAVGMATSIPPHNAAELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGS  +R     E+T      +VVTEIPY V K+ ++EKIAEL+ +K++  +AD+
Sbjct: 238 AYATGRGSFRVRARWEKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E + R   A+V++  L++ T L++   +NM  L   + P+  +L   
Sbjct: 298 RDESAE-DIRLVLEPRARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R +V++RR++Y L +   R  VL G  IA  NLDEV+RIIR    P+      
Sbjct: 357 LREWLDHRRDVLLRRSRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKQ----- 411

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L++VQT AIL +RL  L  L   +IR E 
Sbjct: 412 ------------------------ELMRTFELTDVQTEAILNMRLRSLRRLEEMEIRKEH 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--- 529
           ++L  E      +++S +     I +E+   +           RRT         ED   
Sbjct: 448 DALSKEQDGLNKLVASEAAQWKSIAKEIRETRKTYGPETAIGRRRTTFAAPPTFHEDAFT 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + + VS  G++        RA +   +  S +  + +D +   F   T + V
Sbjct: 508 EALVEREPVTIVVSAKGWI--------RALKGHVQDLSNLQFKGDDSLGHAFFAETTSKV 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F+S G  Y  +  +LP G  +  G+ +  ++ L Q   I ++              ++
Sbjct: 560 MVFASNGRFYTLEAAKLPGG--RGHGEPVRLMIDLEQEAEIVSVFA------YQPGRKLL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+K G        D +   R GK  +  D  D  L+V    + + + +     + + FP
Sbjct: 612 LASKEGRGFVVGEDDCLANTRKGKQVLVTDPPDAALAVRFV-EGDWVAVIGDNRKLLLFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           ++ +         GVR     +G
Sbjct: 671 LNQVPEMT--RGRGVRFQRYREG 691


>gi|296454306|ref|YP_003661449.1| DNA gyrase/topoisomerase IV subunit A [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183737|gb|ADH00619.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 909

 Score =  587 bits (1514), Expect = e-165,   Method: Composition-based stats.
 Identities = 272/943 (28%), Positives = 431/943 (45%), Gaps = 107/943 (11%)

Query: 1   MTEHIISS-----DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S         ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSVQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ +PD  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYA GRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYANGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 TRLMA--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +         +     V+  
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGERSALTGALKIEDEPCVVMM 573

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA- 651
           S+ G + +     + + + ++        L  +Q   I             +   +V A 
Sbjct: 574 SATGLIARTTPSAMDVFNVRSTSD---ERLRDDQITTIFETSTRATYGLVTSAGRLVLAH 630

Query: 652 -------------TKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDE 683
                        +  G V+ +                    IAM              E
Sbjct: 631 VVDLPALPASATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKASAKDESE 690

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                       + + T+ G   R+   A              I L  GD+V+  A+   
Sbjct: 691 DGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAED 745

Query: 744 AD------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            D      +D        K++  Q R   G      +     +    +   +      + 
Sbjct: 746 DDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEG 805

Query: 798 QF---------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +          +LTV         +E G  K T    +    R+  G+R+    K     
Sbjct: 806 ENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTL 865

Query: 840 AL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            L  V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 866 ILAWVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 899


>gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 794

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 276/786 (35%), Positives = 416/786 (52%), Gaps = 53/786 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYV 72
           +      + +E +  YL YA++VI  RA+PD+RDGLKPV RR+L+GM     +  + KY 
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A++ G +MG+YHPHG+A+IYDAL R+AQD+SLR  L++G GNFGS+DGD  AA RYTE
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTE 154

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           CRL   +  +L +LGK TV FRPNYDG+  EP+V+ +R P +L+NG  GIAVGMATNIP 
Sbjct: 155 CRLAGISGEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPP 214

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIR 251
           H+LGE+ D   A+I+N ++ +  LM+ ++GPDFPTG  IL     ++  Y TG+GS+ IR
Sbjct: 215 HHLGELCDALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIR 274

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
           G   +E      +QI++T IPY VNK+ ++ KI +LVRE+++  + D+RDES ++  R+V
Sbjct: 275 GEYALEDVKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKE-VRIV 333

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGILKAFVAFR 365
           +E KR AS ++++  LY++T LQ+ F VN+  L          P+R  L  IL+ F+ FR
Sbjct: 334 LEFKRDASPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFR 393

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV +R ++ L + + R H+L G       LDE++RIIR S   + A ++LM R     
Sbjct: 394 FEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLMAR----- 448

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  L EVQ  AILE++L +L  L    I+ EL    +E+K
Sbjct: 449 ---------------------FKLDEVQVDAILEMKLYKLARLEILVIQEELKQKRLEVK 487

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI---VEGLLDMEDEDCIVREDMVVTV 542
               IL  + +L G +K EL  +K   +  RRTRI       ++  ++  IV ED  V +
Sbjct: 488 RIEGILKDKRKLWGTVKDELAEIKATYNDKRRTRIGGAGSEEVEFSEDAFIVDEDAHVVL 547

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G++KRV         R  K  S   +R+ D V  +   S  ++++ FS+ G  Y  +
Sbjct: 548 TRDGWIKRV---------REVKDPSTTRLREGDAVMTVLAGSLKSNLVLFSNFGAAYVTR 598

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P       G  +  +   + GERI   +    D        +V  TK G   R  L
Sbjct: 599 FNDVPAS--TGYGDPVQKLFKFDDGERIVGALSL--DSRLPRPQKLVAVTKDGLGLRFPL 654

Query: 663 SDFIQ-INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              ++   RSG+   K    DEI+ V+   +++ + + T+         + +   AG   
Sbjct: 655 EGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCRAAEVNELAG-PG 713

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV  I +  GD+V+    V     D        K           +        ++ S 
Sbjct: 714 KGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSPAKYEVTGRGGKGHEMSR 773

Query: 782 EGNISE 787
           +  + E
Sbjct: 774 KDTVKE 779



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 10/263 (3%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           + F ED    +    V  T+ G ++R +               +L   D +++V   + +
Sbjct: 530 VEFSEDAFIVDEDAHVVLTRDGWIKRVRE-------VKDPSTTRLREGDAVMTVLAGSLK 582

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++++L +  G       + +    G      +      G++++    +        + + 
Sbjct: 583 SNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPRPQKLVA 642

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             K     R  + G  E  T      +  G   E    +   ++  +  ++E+ +     
Sbjct: 643 VTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCR 702

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           + +       GKG+    V   + +   +AV P   +  I   + KG  + +   +  + 
Sbjct: 703 AAEVNELAGPGKGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSPAKYEVT 762

Query: 874 SRATKGVVIFSTAKDERVVSVER 896
            R  KG      ++ + V  V+R
Sbjct: 763 GRGGKGH---EMSRKDTVKEVQR 782


>gi|254820902|ref|ZP_05225903.1| DNA gyrase, A subunit [Mycobacterium intracellulare ATCC 13950]
          Length = 1258

 Score =  587 bits (1513), Expect = e-165,   Method: Composition-based stats.
 Identities = 271/780 (34%), Positives = 420/780 (53%), Gaps = 92/780 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ +     +DN     +  L A+ E ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGSQGIHDAYTTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR
Sbjct: 671  SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+E+KR A A V+LN LY++T LQ+ F  NM+++    P    L  +++ +VA +
Sbjct: 731  VGLRIVVEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMIRHYVAHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  L++      
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE------ 844

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + E+Q +AIL+++L RL  L R  I ++L  +  EI 
Sbjct: 845  --------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+  EL  + D+    RRTRI+    D+ DED I RED+VVT++  
Sbjct: 885  DLEDILAKPERQRRIVHDELSEIVDKHGDERRTRIIAADGDVNDEDLIAREDVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT++G V++ KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYE---DAPYLVLATRNGLVKKTKLTDF 1061

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C+ + D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1062 DSNRSGGIVAINLRDNDELVGAVLCSSDEDLLLVSANGQSIRFSATDEALRPM-GRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D ++S+ +V                                          
Sbjct: 1121 VQGMRFNADDYLLSLNVVREGT-------------------------------------- 1142

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           ++L  +  G+ KRT+  ++ +  R GKG+      +    G LV 
Sbjct: 1143 ---------------YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR--RGRLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  ++  ++++ R  E+   
Sbjct: 1186 ALIVDEDSELYAITSGGGVIRTAAGQVRKAGRQTKGVRLMNLGEENTLLAIARNAEANAD 1245



 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 90/130 (69%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   ++    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPGDDSVDRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
 gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2]
          Length = 737

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 389/760 (51%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  V +ID+P  ++  +M  I+GPDFPTG +I+ +   I  AY+TGRGS  +
Sbjct: 182 PHNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFRM 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEP---KAIMMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT   E       ++    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFIIEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                  ++  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVHKSDQLLLLASSIGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHTCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLSWNNNGKVKLEKN 710


>gi|116618458|ref|YP_818829.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097305|gb|ABJ62456.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 812

 Score =  587 bits (1512), Expect = e-165,   Method: Composition-based stats.
 Identities = 260/885 (29%), Positives = 420/885 (47%), Gaps = 96/885 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P   L  LM  ++GPDFPTG ++ G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGIVQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I      +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF++FR+EVV++R+
Sbjct: 303 LSKEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+ R             
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLINR------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E + L  +I     I+  
Sbjct: 410 -------------FEFTQAQAEAIVTLQLYRLTNTDVTQLEEEFSQLNDKINCLNQIIHE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I++E+ ++     +PRR+ I   + +  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ESALKDVIREEIKAITKAYSSPRRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++A            + ++D V     ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSFKASDNEN------GLAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QIN 669
           +  G+     LS    + +       ++        +V  +  G +++  L D +     
Sbjct: 571 KDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGAFTIV--SNDGFIKQTTLVDIVPKAYK 628

Query: 670 RSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +A+KL      +      Q     ++LL +  G  +R+ I  +     R S GV+ 
Sbjct: 629 KKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHNGVGLRYAIKEVPEIGSRTS-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D + +   +                                             
Sbjct: 688 MDLRDDDTIKAALFITDDK----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +  V+E G  K         S R  KG+      K      +     
Sbjct: 707 -----------QSVAIVAENGAFKYMPVSLINHSKRGNKGVL-IFTQKKTVAYKVATATI 754

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            + N + + +++ +  +  + +++   + R   G  +  T K+  
Sbjct: 755 FDSNVKALSILTKRYQIQELQLSDYHESQRIGNGQYVVDTDKNGE 799



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 72/222 (32%), Gaps = 25/222 (11%)

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS-------LAKGDQVI---SMAIVLHADADYD 749
             V      ++V   RN       +R          LA+ D V+   ++    H     +
Sbjct: 494 TAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAEDDLVVFQGTLNTTNHLFMFTN 553

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT-VSEKGF 808
           +     + +         DT E  S +  +  +  +  +      L++    T VS  GF
Sbjct: 554 KGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGAFTIVSNDGF 613

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            K+T+  D        K   A  + K       VA F       ++L+S  G  +R  + 
Sbjct: 614 IKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHNGVGLRYAIK 673

Query: 869 EIRIASRATKGVVIFSTAKDERV----------VSVERIRES 900
           E+      T GV       D+ +           SV  + E+
Sbjct: 674 EVPEIGSRTSGVKAMDLRDDDTIKAALFITDDKQSVAIVAEN 715


>gi|116491057|ref|YP_810601.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
 gi|116091782|gb|ABJ56936.1| DNA topoisomerase IV subunit A [Oenococcus oeni PSU-1]
          Length = 811

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/793 (31%), Positives = 408/793 (51%), Gaps = 42/793 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  +   Y
Sbjct: 3   DESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG YHPHG+++IYDAL RM+Q+W +R  LI+  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L DL +  VD   N+D +  EP VL +R PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++  + ++ +P   L+ LM+ + GPDFPTG +I G  GIKNAY TGRG + +R
Sbjct: 183 PHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKVYLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    ++QI +TE+PY+VNK+ ++ +I E+   K +  I ++RD++ R+G  + 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+A+ IL+ L++ T LQ  ++ NM A+N  +P    L   L AF+ FR+EV+ R
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKEVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA+ R  ++ GL   ++ LDEVV  IR S + + A+  L+++           
Sbjct: 363 RTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S+ Q  AI+ L+L RLT      ++NE + L  +I E   IL
Sbjct: 412 ---------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
                L  +++ EL  ++ +   PRR++I      L ++    I  ED++V ++  GY K
Sbjct: 457 KETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+A    G         D+D+   L  V+T +S+  F++ G +   +V+ L   
Sbjct: 517 RASFRSYKATDDNGLT-------DDDYPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADT 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---I 666
             +  G+ L   +S         ++   + +        VF +    V++   +      
Sbjct: 570 KWKDVGEHLSQEIS--GLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQVDKNALNPTK 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              +    A+ +  ++ ++SV     +N  +++ T+ G   +FPI  I +     S G +
Sbjct: 628 YYKKRASKAIAIKGKNVLVSVAFAASQNHLVVMATQKGYLYKFPIGEIALMTA-KSSGAK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              ++K D+++SM ++   D            +     +       +   +     +  I
Sbjct: 687 PAKISKKDRIVSMDLIDSEDLMVLMSDRGHSKIINPLEIPISTVNSVQKAETIFMADEII 746

Query: 786 SEERCQELKLKEQ 798
              +      K +
Sbjct: 747 GGTQAISRSKKSE 759



 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 23/225 (10%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E+ I+  TK G   R   ++ R +   +  G     L   D  + +A V    +
Sbjct: 497 AVMIANEDVIVQITKNGYAKR---ASFRSYKATDDNG-----LTDDDYPVYLAKVNTLSS 548

Query: 747 -----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                +    I    +  A  +           +   +  E  I     ++LK    F+ 
Sbjct: 549 LFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVF 608

Query: 802 TVSEKGFGKRTSSYDFRISN----RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           T S+  F K+        +     R+ K   A  +   N + ++   F  + N  +++ +
Sbjct: 609 TSSDA-FVKQVDKNALNPTKYYKKRASK---AIAIKGKNVLVSV--AFAASQNHLVVMAT 662

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
            KG L + P+ EI + +  + G      +K +R+VS++ I   ++
Sbjct: 663 QKGYLYKFPIGEIALMTAKSSGAKPAKISKKDRIVSMDLIDSEDL 707



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 83/252 (32%), Gaps = 17/252 (6%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           +   + +         N   +V  TK+G  +R     +   + +G     L   D  + +
Sbjct: 486 QTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNG-----LTDDDYPVYL 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-----SVGVRGISLAKGDQVISMAIVL 742
                 + + + T  G  +   +  +     ++     S  + G  LA+ + VI +    
Sbjct: 541 AKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISG--LAEDEIVIKVFDFK 598

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                             Q    + +  +    +   ++                Q  L 
Sbjct: 599 DLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVAFAASQNHLV 658

Query: 803 V--SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           V  ++KG+  +    +  +      G +   +SK +    +V++  ++  D ++L+SD+G
Sbjct: 659 VMATQKGYLYKFPIGEIALMTAKSSGAKPAKISKKDR---IVSMDLIDSEDLMVLMSDRG 715

Query: 861 TLIRVPVNEIRI 872
               +   EI I
Sbjct: 716 HSKIINPLEIPI 727


>gi|290890538|ref|ZP_06553613.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
 gi|290479934|gb|EFD88583.1| hypothetical protein AWRIB429_1003 [Oenococcus oeni AWRIB429]
          Length = 811

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 252/793 (31%), Positives = 408/793 (51%), Gaps = 42/793 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I  +S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  +   Y
Sbjct: 3   DESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G VMG YHPHG+++IYDAL RM+Q+W +R  LI+  GN GS+D DPPAA RYT
Sbjct: 63  RKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPPAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  +L DL +  VD   N+D +  EP VL +R PN+LVNG  GI+ G AT IP
Sbjct: 123 EARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV++  + ++ +P   L+ LM+ + GPDFPTG +I G  GIKNAY TGRG + +R
Sbjct: 183 PHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGGIIQGLDGIKNAYTTGRGKVYLR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + I++    ++QI +TE+PY+VNK+ ++ +I E+   K +  I ++RD++ R+G  + 
Sbjct: 243 AKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIA 302

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IEL + A+A+ IL+ L++ T LQ  ++ NM A+N  +P    L   L AF+ FR+EV+ R
Sbjct: 303 IELSKDANAEGILDYLFKKTDLQIAYNFNMTAINKQRPVSVGLKQALSAFLDFRKEVIRR 362

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++ L KA+ R  ++ GL   ++ LDEVV  IR S + + A+  L+++           
Sbjct: 363 RTEFELKKAQARQEIVEGLIKMLSILDEVVATIRASESRKNAKENLIKK----------- 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             S+ Q  AI+ L+L RLT      ++NE + L  +I E   IL
Sbjct: 412 ---------------FQFSDPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSIL 456

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
                L  +++ EL  ++ +   PRR++I      L ++    I  ED++V ++  GY K
Sbjct: 457 KETKELNKVLRNELKEIEKKYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAK 516

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     Y+A    G         D+D+   L  V+T +S+  F++ G +   +V+ L   
Sbjct: 517 RASFRSYKATDDNGLT-------DDDYPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADT 569

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF---I 666
             +  G+ L   +S         ++   + +        VF +    V++   +      
Sbjct: 570 KWKDVGEHLSQEIS--GLAEDEIVIKVFDFKDLKQTGTFVFTSSDAFVKQVDKNALNPTK 627

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              +    A+ +  ++ ++SV     +N  +++ T+ G   +FPI  I +     S G +
Sbjct: 628 YYKKRASKAIAIKGKNVLVSVTFAASQNHLVVMATQKGYLYKFPIGEIALMTA-KSSGAK 686

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              ++K D+++SM ++   D            +     +       +   +     +  I
Sbjct: 687 PAKISKKDRIVSMDLIDSEDLMVLMSDRGHSKIINPLEIPISTVNSVQKAETIFMADEII 746

Query: 786 SEERCQELKLKEQ 798
              +      K +
Sbjct: 747 GGTQAISRSKKSE 759



 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 25/226 (11%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 E+ I+  TK G   R   ++ R +   +  G     L   D  + +A V    +
Sbjct: 497 AVMIANEDVIVQITKNGYAKR---ASFRSYKATDDNG-----LTDDDYPVYLAKVNTLSS 548

Query: 747 -----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                +    I    +  A  +           +   +  E  I     ++LK    F+ 
Sbjct: 549 LFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVFDFKDLKQTGTFVF 608

Query: 802 TVSEKGFGKRTSSYDFRISN----RSGKGIRATDVSKINEIGALVAV-FPVNDNDQIILV 856
           T S+  F K+        +     R+ K   A  +   N    LV+V F  + N  +++ 
Sbjct: 609 TSSDA-FVKQVDKNALNPTKYYKKRASK---AIAIKGKNV---LVSVTFAASQNHLVVMA 661

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           + KG L + P+ EI + +  + G      +K +R+VS++ I   ++
Sbjct: 662 TQKGYLYKFPIGEIALMTAKSSGAKPAKISKKDRIVSMDLIDSEDL 707



 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 83/252 (32%), Gaps = 17/252 (6%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           +   + +         N   +V  TK+G  +R     +   + +G     L   D  + +
Sbjct: 486 QTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNG-----LTDDDYPVYL 540

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRN-----SVGVRGISLAKGDQVISMAIVL 742
                 + + + T  G  +   +  +     ++     S  + G  LA+ + VI +    
Sbjct: 541 AKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISG--LAEDEIVIKVFDFK 598

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                             Q    + +  +    +   ++                Q  L 
Sbjct: 599 DLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVTFAASQNHLV 658

Query: 803 V--SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           V  ++KG+  +    +  +      G +   +SK +    +V++  ++  D ++L+SD+G
Sbjct: 659 VMATQKGYLYKFPIGEIALMTAKSSGAKPAKISKKDR---IVSMDLIDSEDLMVLMSDRG 715

Query: 861 TLIRVPVNEIRI 872
               +   EI I
Sbjct: 716 HSKIINPLEIPI 727


>gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
 gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56']
          Length = 800

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 287/803 (35%), Positives = 415/803 (51%), Gaps = 63/803 (7%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYVKCAR 76
             S+ DE Q  YL YA++VI  RA+PD+RDGLKPV RRIL+ M   + +  + KY K A 
Sbjct: 35  DTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAA 94

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+VMGKYHPHG+ AIYDA+ R+AQD+ +R  LI G GNFGSVDGD PAA RYTE +L+
Sbjct: 95  VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLR 154

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL +LG+ TVDFRPNYDG+  EP+VL +R+PN+LVNG  GIAVGMAT+IP HNLG
Sbjct: 155 PLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLG 214

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSH 255
           EV+D CVA+I+N ++    L+  ++GPDFPTG  +   +  ++  Y  G+GS+ +RG   
Sbjct: 215 EVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQ 274

Query: 256 IEKTSGDR---EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           +E+  G R    QIV+T IPY + + A++EKIAE++  K++  + D+RDES  +  R+V+
Sbjct: 275 LEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGE-VRIVM 333

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGILKAFVAFRE 366
           ELKRGA A +++  LY+ T L     VN+  L          P R  L  IL  F+ FR 
Sbjct: 334 ELKRGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRY 393

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L + R R  +L G       LDEV+RIIR S     A  +LM+R      
Sbjct: 394 ATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKR------ 447

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E QT AILEL+L RL  L    ++ +L     E K 
Sbjct: 448 --------------------FTLNEEQTDAILELKLYRLARLEILLVQKDLGEKRAEAKR 487

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSH 544
              +L S ++  GI++ EL+ +K      RRT++V  + + E   ED IV ED  V +S 
Sbjct: 488 IEGLLRSDAKRWGIVRDELVEIKGSYGEKRRTKVVGSIDEPEYQAEDFIVAEDANVILSA 547

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+VKRV         R  K  +   +R+ D V      ST ++V FFS+LG  Y  ++ 
Sbjct: 548 QGWVKRV---------REVKDLASTRIREGDSVLAAVAGSTRSTVAFFSNLGACYVCRIH 598

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFP----------EDESSWNNLYVVFATKH 654
            +P       G  +  +  L  GER+  +M F            D +     + +  T+ 
Sbjct: 599 DVPQS--TGYGDPVQKLFKLADGERLIALMSFDPRALDVPAQTPDSAEPEPPFALAITRG 656

Query: 655 GNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G   R  L        RSG+   KL+  DE+L V      + +L  +     +   +  +
Sbjct: 657 GLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVHAVDGADRVLCASSDAWALSVAVEEL 716

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
            + +G    G   + +A+G++++  A+ L             K +      I+G      
Sbjct: 717 ALLSG-PGKGSVVMRVAEGERLVGAALALGPSDVITVETEKGKTLEIAASKIAGQRGTQG 775

Query: 774 SLKNDSSVEGNISEERCQELKLK 796
                      +         L+
Sbjct: 776 EPVARRDRFARVVPPAVVVPTLE 798



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 85/249 (34%), Gaps = 50/249 (20%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  +  G V+R +             + ++   D +L+    +  + +   + LG C   
Sbjct: 543 VILSAQGWVKRVRE-------VKDLASTRIREGDSVLAAVAGSTRSTVAFFSNLGACYVC 595

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            I  +    G      +   LA G+++I++        D                     
Sbjct: 596 RIHDVPQSTGYGDPVQKLFKLADGERLIALMSFDPRALD--------------------- 634

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGI 827
                           +  +     + +  F L ++  G G R S    R  S RSG+  
Sbjct: 635 ----------------VPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGR-- 676

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
                +K+NE   ++ V  V+  D+++  S     + V V E+ + S   KG V+   A+
Sbjct: 677 ---RFAKLNEGDEVLFVHAVDGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAE 733

Query: 888 DERVVSVER 896
            ER+V    
Sbjct: 734 GERLVGAAL 742


>gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 580

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 259/561 (46%), Positives = 347/561 (61%), Gaps = 32/561 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +  + +  EM+ SYL YA++VI+ RA+PD+RDGLKPVHRR+++ M   G   ++ Y KC
Sbjct: 42  RVKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKC 101

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           +R+ G+VMGKYHPHG++AIYD L RMAQ WS+R +L++GQGNFGS   DP AA RYTECR
Sbjct: 102 SRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECR 161

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  ++ D+ KDTVDF PNYDG  QEP VL AR+PN+LVNG  GIAVGMATNIP HN
Sbjct: 162 MAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHN 221

Query: 195 LGEVVDGCVAVIDNPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           + EV DG    +D+PD     L+    + I+GPDFPTGA ILG  GI+ AY TGRG I +
Sbjct: 222 MREVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATILGHKGIEQAYRTGRGLITM 281

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           R V + E+    R  +VVTE+PYQVN   +   I E VR+ +I  IAD+RDE S R G R
Sbjct: 282 RAVVNTEEIK-GRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+ LKR A   V+LN LY+++ LQ  F  NM+AL    P   +L   ++ +V+ + EV+
Sbjct: 341 LVLVLKRDAVPKVVLNNLYKHSQLQQTFGANMLALVDGVPRTLSLDAFIRHWVSHQLEVI 400

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+YL  +A +R H+L G   A+  +DEVV +IR S + +TAR  LM           
Sbjct: 401 DRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLM----------- 449

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + + +VQ  AIL ++L RL  L R  I +E   L  +I++  D
Sbjct: 450 ---------------NLLDVDDVQADAILAMQLRRLAALERQKILDEHEELMRKIEDYND 494

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL+S  R   I+  EL  +  +    RRTRI+    +M  ED I  E++VVTV+  GY+K
Sbjct: 495 ILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVVVTVTRAGYIK 554

Query: 550 RVPLSVYRAQRRGGKGRSGVV 570
           R     YRAQ RGGKG   + 
Sbjct: 555 RTKADEYRAQHRGGKGIKALN 575



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 41/91 (45%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           ++    DY++ +   +           +       +  + +     E   ++L  +E  +
Sbjct: 485 LMRKIEDYNDILASPERQRKIVGDELDEIVAKYGDERRTRILPFSGEMNVEDLIAEENVV 544

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
           +TV+  G+ KRT + ++R  +R GKGI+A +
Sbjct: 545 VTVTRAGYIKRTKADEYRAQHRGGKGIKALN 575


>gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
 gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa]
          Length = 738

 Score =  586 bits (1511), Expect = e-165,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 386/760 (50%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I+ P  +++ +M  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE++ IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEP---KAIIMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV---EGLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT           ++    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTFTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|302670819|ref|YP_003830779.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
 gi|302395292|gb|ADL34197.1| DNA topoisomerase IV subunit A ParC [Butyrivibrio proteoclasticus
           B316]
          Length = 745

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 383/742 (51%), Gaps = 27/742 (3%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  I     +D MQ S++ YA++VI+ RA+PD+RDGLKPV RR L+ M ++G+ +++ Y 
Sbjct: 2   EDRIIKTEYSDIMQKSFIDYAMSVIVARALPDVRDGLKPVQRRTLYDMYELGLRYDRPYR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IYD L  M QD+   L L++G GNFG+++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYDCLVVMTQDFKKILPLVDGHGNFGNIEGDSHAAMRYTE 121

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL K      L+DL K+ VDF PN+D + +EP VL  + PN L+NG  GIAVGMAT+ P
Sbjct: 122 ARLSKITQENFLEDLDKNVVDFVPNFDETEREPSVLPVKIPNFLINGSEGIAVGMATSTP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  +A + +  +    LM+ I+GPDFPTG +++ +  +   Y TG G I IR
Sbjct: 182 PHNLAEVIDAEIAFMQDDTLTTKDLMKYIKGPDFPTGGIVINKDELLEIYETGVGKIRIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKA---AMLEKIAELVREKRIVDIADLRDESDRQGY 308
           G    EK       +V+TEIPY +        +  +AEL  +K   DI D+ ++S ++G 
Sbjct: 242 GKVETEKGKNGHINLVITEIPYTMIGMGIGKFMSDVAELAEKKITNDIIDISNQSSKEGI 301

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELK+  + +   N LY+ T L+  F VNM+A++  +PE  +L  I++A   F+ E 
Sbjct: 302 RIVIELKKDTNVENFTNLLYKKTKLEDTFGVNMLAIDNGRPETMSLREIMRACADFQFET 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LL K +D+  +  GL  A   +D V+ I+R S +   A+  L+       + K
Sbjct: 362 ATRKYTTLLKKEQDKKEIQEGLIKACNVIDLVIEILRGSKDRAMAKNCLVNGETEGINFK 421

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                      +      +  +E Q  AILE+RL +L GL  + +  E       I +  
Sbjct: 422 S--------RESKAMAAQLLFTEAQADAILEMRLYKLIGLELEALVKEHEQTVANIYKYE 473

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +   +  +I+ +L  +K E    R+T I      + +E  +   D+   +   GY 
Sbjct: 474 DILENHDSMAMVIQSDLNKIKKEFKADRKTVIDNRETAVYEEKPVEEMDVAFIMDRFGYA 533

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  S Y   +             +      FI+     V FF++ G ++  K   LP 
Sbjct: 534 KTIDASTYEKNKET----------IQAEFKYSFIMKNTGKVCFFTNTGNLHTVKAMDLPQ 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G  + +G  + N+ + +  +    +     D + +    ++F TK   ++     +F   
Sbjct: 584 GKMRDKGIPIDNVSNFDTAKETIIMAASQSDLNLYR---ILFTTKMSMMKIVDGGEFDVS 640

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                 A KL   DE+++VE   ++  ++L +  G  +RF +  I     + +VGVRG+ 
Sbjct: 641 K-RTVAATKLADGDEVVNVEILHEQKTVILRSNDGFFLRFYVDTIPEKK-KAAVGVRGMR 698

Query: 729 LAKGDQVISMAIVLHADADYDE 750
           L K D +  +  +   +    E
Sbjct: 699 LGKNDFIRDVFYLNDMEEKAIE 720



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  ++    K     +F +S R          +K+ +   +V V  +++   +IL S+ 
Sbjct: 620 ILFTTKMSMMKIVDGGEFDVSKR------TVAATKLADGDEVVNVEILHEQKTVILRSND 673

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           G  +R  V+ I    +A  GV      K++ +  V  + + E 
Sbjct: 674 GFFLRFYVDTIPEKKKAAVGVRGMRLGKNDFIRDVFYLNDMEE 716


>gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 767

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 259/742 (34%), Positives = 387/742 (52%), Gaps = 39/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +        S  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDDTTDENLNVPD--LSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELKLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L ++ VDFR NYDG+  EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAAARYTEARMTLAAEALLEGLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+ E+ + C+ +I  PD   D L+  + GPDFPTG  I+     I  
Sbjct: 179 GIAVGMATNIPPHNIAELCEACLHLIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIA+L++ K+I  + D+
Sbjct: 239 AYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDI 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E + +    D++++ LYR + L+  FS+NM   ++G  P+  ++  +
Sbjct: 299 RDESAE-DVRIVLEPRSKNVEPDILMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V++RR+ + + K   R  VL GL IA  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDHRRDVLIRRSTHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAA---- 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     +     + ++ Y     G   L+EVQ  AIL +RL  L  L   +++ E 
Sbjct: 414 ---LMREDWGRTFTRAMSEADYVGPPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRER 470

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--E 530
           ++L  E     D+L+S       I  ++   K +         RR++  E     E   E
Sbjct: 471 DALMEERAGLDDLLNSVELQWSSIADQIRETKKQFGKDHPAGARRSQFAEAGEVEEVPLE 530

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA          +  +D D    +F   T   +L
Sbjct: 531 AMIDREPITVVCSEMGWI--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDRLL 582

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G        LI  L    G          +     +   ++ 
Sbjct: 583 AFGSNGRFYTVSAANLPGGRGMGEPLRLIVDLPNEAG--------LVDLFIHKSGRKLLV 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       D +   RSGK  + +   +  L  +  T  + + +  +  + + FP+
Sbjct: 635 ASSAGDGFVVPEDDVVAQTRSGKQVLNVRGDNRALVCKPVTG-DSVAVVGENRKVLVFPL 693

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +    GR   GVR      G
Sbjct: 694 DELPEM-GRG-KGVRLQKYKDG 713


>gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
 gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic]
          Length = 738

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 387/760 (50%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNI 
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIL 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ +M  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEP---KAIMMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIV---EGLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT           ++    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTFTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C]
 gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C]
          Length = 736

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 389/760 (51%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++     +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  ++  +M  I+GPDFPTG +I+ ++  I +AY TGRGS  +
Sbjct: 182 PHNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ +    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   R     +++  L++ T+L+S   +NM  +     P+   ++ +L+ F++ R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +MQR        
Sbjct: 361 ITRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEP---KAIMMQR-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I  E ++L  +     
Sbjct: 410 ------------------FQLTEIQVEAILNTRLRSLRKLEEQEIITEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDEL-----DTPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  ++K+E+ +V+ +         RRT   +       ++    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILIISSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N    I    P         +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNNDITEILVYKP---------DHLLLLASSIGKGFVV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   +SGK  M +      ++       + +    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKSGKQIMNVPDGHTCIACLPVNG-DSVACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNREDGLSWNSGGKVKLEKN 710


>gi|87123344|ref|ZP_01079195.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
 gi|86169064|gb|EAQ70320.1| putative DNA topoisomerase chain A [Synechococcus sp. RS9917]
          Length = 831

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 288/885 (32%), Positives = 437/885 (49%), Gaps = 110/885 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ +  +++  EMQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y 
Sbjct: 3   EERVQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S R  L++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFSSRHPLLDGHGNFGSVDDDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH  LLD++G DTVDF PN+DGS QEP VL A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHQGLLDEIGDDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCAGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD  VA++  P++  D L+ +I GPDFPTG  +L  +G++  Y +GRGSI +R
Sbjct: 183 PHNLGEVVDALVALVRQPELSDDKLLTLIPGPDFPTGGEVLLGSGVRETYLSGRGSIPMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV+HIE+         R  +V+TE+P+Q++KA  +EK+AE V E RI  IAD+RDESDR 
Sbjct: 243 GVAHIEEVQPGKGRHKRNAVVITELPFQLSKAGWIEKLAEQVNEGRIGGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVV+EL+R +    +L  L R TSLQS F   ++AL   +P++ +L  +L+ F+ +RE
Sbjct: 303 GMRVVVELRRDSDPGKVLADLQRRTSLQSNFGAILLALVNGQPQQLSLRQLLQTFLEYRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + ++RRT + L K  DR  V+ GL  A+  L +V+ +I+                     
Sbjct: 363 QTLIRRTSHALRKTEDRLEVVEGLNRALEALQQVISMIQ--------------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                +  D +S        + LSE Q  A+L + L RLTGL ++ +R E   L  E   
Sbjct: 402 -----EARDAASARASLMVHLDLSERQADAVLAMPLRRLTGLEQESLRKEAEELRQERSR 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL- 545
              +L  R  LL  +  EL  ++    TPRRTR++EG   +  E    +           
Sbjct: 457 LQRLLEQRDVLLAALVDELKQLRKRFATPRRTRLIEGGDHLLAERAASQRPNAELQRKQA 516

Query: 546 -GYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----------DFVTDLFIVSTHTSVLFFS 593
            G +      + +A  +       V+ R                  +  ++    +L  +
Sbjct: 517 LGALPGDARLLIQADGQVKVISPQVLGRMHLQDAAALGDEPSPARLILPIAPPPRLLALT 576

Query: 594 SLGF---VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           + G    V  E   + P    +    A+     +N  +     +P  +D+ +   L +  
Sbjct: 577 AQGRVALVRWEFAGQQPGALERFLPTAMEGETVINLLQ-----LPDTDDDHASRTLSLGL 631

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  G  +R  L D  +++      +KL     + +   C++   I L T +G+ +R P+
Sbjct: 632 LSSDGRFKRLPLQDLQELSGRAASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVLRLPV 691

Query: 711 SAIR-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                   G+ + G   + L  G+Q++    +                            
Sbjct: 692 DDTALPLMGKLAQGPVALRLLPGEQLVGAVSLA--------------------------- 724

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         ++  + +G   R    D R+ +R   G  A
Sbjct: 725 ------------------------ADAPGQLIAATRQGRLIRRPLGDLRLCHRGDLGDLA 760

Query: 830 TDVSKI-NEIGALVAVFPVNDNDQII-LVSDKGTLIRVPVNEIRI 872
            D++        LV+V        ++ L+S +G   R+    I  
Sbjct: 761 IDLNATAAPDDRLVSVCLATP---LLGLISSQGRHGRLAGTAIST 802



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 69/175 (39%), Gaps = 14/175 (8%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G+ VI++  +   D D+  R   +  +S+  R      +++  L   ++    + E   
Sbjct: 605 EGETVINLLQLPDTDDDHASRTLSLGLLSSDGRFKRLPLQDLQELSGRAASVLKLKEGVS 664

Query: 791 QELK---LKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVF 845
            +      +   I  V++ G   R    D    +  +  +G  A  +        LV   
Sbjct: 665 LQAGVICSEGGTIALVTDIGRVLRLPVDDTALPLMGKLAQGPVALRLLPGE---QLVGAV 721

Query: 846 PVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA----KDERVVSV 894
            +  +   Q+I  + +G LIR P+ ++R+  R   G +          D+R+VSV
Sbjct: 722 SLAADAPGQLIAATRQGRLIRRPLGDLRLCHRGDLGDLAIDLNATAAPDDRLVSV 776



 Score = 44.8 bits (104), Expect = 0.063,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
           R+  ++   A ++  + +    T+++ ++ +      +   +   +   +  +S  G  K
Sbjct: 580 RVALVRWEFAGQQPGALERFLPTAMEGETVINLLQLPDTDDDHASRTLSLGLLSSDGRFK 639

Query: 811 RTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           R    D + +S R      A  V K+ E  +L A    ++   I LV+D G ++R+PV++
Sbjct: 640 RLPLQDLQELSGR------AASVLKLKEGVSLQAGVICSEGGTIALVTDIGRVLRLPVDD 693

Query: 870 --IRIASRATKGVVIFSTAKDERVVSVERIRES 900
             + +  +  +G V       E++V    +   
Sbjct: 694 TALPLMGKLAQGPVALRLLPGEQLVGAVSLAAD 726


>gi|124024717|ref|YP_001013833.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
 gi|123959785|gb|ABM74568.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. NATL1A]
          Length = 827

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 263/880 (29%), Positives = 434/880 (49%), Gaps = 110/880 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + Y 
Sbjct: 3   KERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  +++G GNFGS+D DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQIFNSRYPILDGHGNFGSIDDDPPAAMRYTE 122

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +   +L ++ K+TVDF PN+DGS QEP VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISNDAILSEIDKETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+  +A+I  P ++ + L+EII GPDFPTG  IL   GIK  Y  GRGSI +R
Sbjct: 183 PHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVSNGIKETYTKGRGSITMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++ IE+ +       R  I+++E+PYQ+NKA  +EK+A+LV   +I  IAD+RDESDR 
Sbjct: 243 GIARIEEINPGKGKHKRSGIIISELPYQLNKAGWIEKLADLVNNGKISGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+++E+KR +    IL+ LY+ TSLQS F   ++AL   +P + TL  +L  F+ FRE
Sbjct: 303 GMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQLTLRKLLNNFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++ R+ YLL   ++R  ++  L  A  N+ +V+ +I  S +   A+  L+        
Sbjct: 363 NTILLRSNYLLKNIKNREEIVEALIQATNNVRKVIELIENSKDTPEAKSNLI-------- 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              ++ ++E Q   IL + L ++TGL +D ++NEL  L  +  E
Sbjct: 415 ------------------ISLKINERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAE 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT----- 541
              I++ +  L+ ++ +EL  +K    + RRT+++EG   +  E    +           
Sbjct: 457 LELIINDKENLMKVMVKELKDLKKRFGSKRRTKLIEGGDALIAEKMANQRPNKELQRINA 516

Query: 542 ---VSHLGYVKRVPLSVYRAQR----RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
              +S    +     +  +       +  K +     R +     L     +   +   S
Sbjct: 517 LKELSKDSEIIIQSNNEIKIIPSLTIKKLKLKESDQERKDILPAKLIWPIKNEPKILAVS 576

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATK 653
                    W         +   L   L    + ++I  ++P  E      ++ +   + 
Sbjct: 577 QEGKIGLLKWEFA----GQKPGPLKQFLPAGLENDKIINLIPLTE----IRDISIGLIST 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  +++   I+      +KL    ++ S   C + + + + + +G+ ++  I+  
Sbjct: 629 DGKFKRISINEISDISNRSTTILKLKDSIKLKSCILCKENSYLYIVSDIGRIIKIKITEN 688

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
              F G+ + G   I L   + ++                                    
Sbjct: 689 DFPFMGKLAQGTNIIKLFPNENIV------------------------------------ 712

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                          E     + K + ++ ++ KG   + S+ +  IS +   GI     
Sbjct: 713 ---------------EALSFQEKKNKDLILITNKGSFVKHSTKEITISKKGALGIMGIHF 757

Query: 833 SKINEI--GALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              N+     ++  F   +N  + + +DK    R+  ++I
Sbjct: 758 KD-NKTIKERVIDCFI--NNKHVFIKTDKDRYQRLKTDQI 794



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 14/185 (7%)

Query: 728 SLAKGDQ-----VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            L + DQ     + +  I    +      +     +   +   +G           + +E
Sbjct: 546 KLKESDQERKDILPAKLIWPIKNEPKILAVSQEGKIGLLKWEFAGQKPGPLKQFLPAGLE 605

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGAL 841
            +         ++++  I  +S  G  KR S  +   ISNR      +T + K+ +   L
Sbjct: 606 NDKIINLIPLTEIRDISIGLISTDGKFKRISINEISDISNR------STTILKLKDSIKL 659

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +     +N  + +VSD G +I++ +  N+     +  +G  I     +E +V     +E
Sbjct: 660 KSCILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNENIVEALSFQE 719

Query: 900 SEIVD 904
            +  D
Sbjct: 720 KKNKD 724



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 14/170 (8%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D++I++  +       D  I  +      +R+   +  +I++         +  + + 
Sbjct: 605 ENDKIINLIPLTEI---RDISIGLISTDGKFKRISINEISDISNRSTTILKLKDSIKLKS 661

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             L  +  ++  VS+ G   +    +  F    +  +G     +        +V      
Sbjct: 662 CILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNE---NIVEALSFQ 718

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD----ERVV 892
           +  N  +IL+++KG+ ++    EI I+ +   G++      +    ERV+
Sbjct: 719 EKKNKDLILITNKGSFVKHSTKEITISKKGALGIMGIHFKDNKTIKERVI 768


>gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis]
          Length = 470

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 253/485 (52%), Positives = 338/485 (69%), Gaps = 27/485 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ +  IT ++I  EMQ S++ YA++VI+ RA+PD RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   EQNQSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG++A+Y+ + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K +  L+ D+ KDT+DF+ NYDGS QEPVV+ AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEAKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H LGEV+DG +A+ +N +ID+  LME I GPDFPTGA ILGR+GI+ AY TGRGSI 
Sbjct: 183 IPPHQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEILGRSGIRRAYQTGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     +++I+VTE+PYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R
Sbjct: 243 LRAKTEIEDH-NGKQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGMR 301

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE++R A+A+V+LN L++ T+LQS F +N++AL G +P+   L   L+ ++  +  V 
Sbjct: 302 IVIEVRRDANANVLLNNLHKQTALQSSFGINLLALVGGRPKVLNLKECLEEYLDHQIVVT 361

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KA  RAH+L GL IA+ +LDEV+ +IR S   E AR  LM+R         
Sbjct: 362 RRRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMER--------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LS  Q++AIL++RL RLTGL RD I  E N L   I E  +
Sbjct: 413 -----------------FELSYDQSQAILDMRLQRLTGLERDKIEGEYNELQQRIAELKE 455

Query: 490 ILSSR 494
           IL + 
Sbjct: 456 ILENE 460


>gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 738

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 247/760 (32%), Positives = 387/760 (50%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I+ P  +++ +M  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE++ IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEP---KAIIMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRI---VEGLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT     +     ++    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVMFTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|225028803|ref|ZP_03717995.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
 gi|224953887|gb|EEG35096.1| hypothetical protein EUBHAL_03082 [Eubacterium hallii DSM 3353]
          Length = 754

 Score =  586 bits (1510), Expect = e-165,   Method: Composition-based stats.
 Identities = 238/734 (32%), Positives = 390/734 (53%), Gaps = 34/734 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I     +D MQ SY+ YA++VI  RA+PD+RDGLKPV RR+L+ M ++G+  +K + 
Sbjct: 2   SEQIIKTEFSDVMQKSYIDYAMSVICQRALPDVRDGLKPVQRRVLYAMQELGLSADKPHR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IY+AL  M QD+   + L++G GNFGS++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYEALVVMEQDFKKGMPLVDGHGNFGSIEGDGAAAMRYTE 121

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            +LQK    + L D+ K+ VDF+PN+D + +EPVVL  R PN+L+NG  GIAVGM T+IP
Sbjct: 122 AKLQKFTQDVYLADMDKNVVDFQPNFDETEKEPVVLPVRIPNLLINGAEGIAVGMTTSIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVVDG  A +DNP+I  + LME ++GPDFPTG +++ +  +KN Y TG G + +R
Sbjct: 182 PHNLSEVVDGVKAYMDNPEITTEELMEYVKGPDFPTGGIVVNQKELKNIYETGSGKMKLR 241

Query: 252 GVSHIEKTSGDREQ--IVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G  H EK     E+  +V+TEIPY +   N +  +  +  L+  K   DI D+ +ES ++
Sbjct: 242 GKVHFEKAKKRSERDKLVITEIPYTMIGANISKFISDVVSLIENKTTSDIIDVSNESSKE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R A A+ + N LY+ T L+  F VNM+A+   KPE  +L  I+     F  
Sbjct: 302 GIRIVLELRRNADAERLENLLYKKTRLEDTFGVNMLAIANGKPELLSLKDIISHHTKFHY 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ R+ + LL K  ++  +  GL  A   +D ++ I+R S + + A+  L+        
Sbjct: 362 EVLTRKYETLLKKELEQKEIKEGLIKACDIIDLIIEILRGSKSLKDAKSCLINGDTE--- 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                ++   +  +      +  +E Q  AILE+RL RL GL    ++ E   +  +I +
Sbjct: 419 -----NITFKTQKSKKEASKLCFTEKQASAILEMRLYRLIGLEIMALQEEYAEILKKIDK 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL   + +  ++K++L  +K      R+T +      +     I  +++V  +   G
Sbjct: 474 YQDILEHPASMKRVMKKDLEKIKKNYGFDRKTELTNAKAAVVKALPIEEKEVVFVMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K +  + Y                       +        +  F+  G +++ KV  +
Sbjct: 534 YSKILDKNTYERNEET----------VLKEYRHIVHCMNTDKICVFTDTGVMHQIKVQDI 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  L NI + +        +     + +     ++F T    ++    ++FI
Sbjct: 584 PSGRLRDKGTPLDNIGNYDSRNE---QILLIVPDRTLKEASLLFVTASSMIKLVDGAEFI 640

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN-----DILLTTKLGQCVRFPISAIRVFAGRNS 721
              ++     KL   D + +V     +       I++ ++ G  +RFP+  +     + +
Sbjct: 641 VQKKTVAST-KLAEGDILAAVRLVAAKEGSINAQIIMQSEEGYFLRFPLEEV-TRKKKGA 698

Query: 722 VGVRGISLAKGDQV 735
           +G+RG+ L + D +
Sbjct: 699 IGIRGMKLQEDDHI 712



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/501 (11%), Positives = 132/501 (26%), Gaps = 29/501 (5%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
                + +VV +I      +               + +L    D             L +
Sbjct: 271 NISKFISDVVSLIENKTTSDIIDVSNESSKEGIRIVLELRRNADAERLENLLYKKTRLED 330

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
                +L +   +   L   DI +       E+         +  L      E   +K+ 
Sbjct: 331 TFGVNMLAIANGKPELLSLKDIISHHTKFHYEVLTRKYETLLKKEL------EQKEIKEG 384

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
           L        +   +    +     +  ++         +   S   A +     +    +
Sbjct: 385 LIKACDIIDLIIEILRGSKSLKDAKSCLINGDTENITFKTQKSKKEASKLCFTEKQASAI 444

Query: 572 RDEDFVTDL---FIVSTHTSVLFFSSLGFVYKE--KVWRLPIGSPQARGKALINILSLNQ 626
            +      +    +            +            +     +   K   N     +
Sbjct: 445 LEMRLYRLIGLEIMALQEEYAEILKKIDKYQDILEHPASMKRVMKKDLEKIKKNYGFDRK 504

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E         +         V    + G  +    + + +   +           E   
Sbjct: 505 TELTNAKAAVVKALPIEEKEVVFVMDRFGYSKILDKNTYERNEETVLK--------EYRH 556

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           +  C   + I + T  G   +  +  I     R+  G    ++   D      +++  D 
Sbjct: 557 IVHCMNTDKICVFTDTGVMHQIKVQDIPSGRLRD-KGTPLDNIGNYDSRNEQILLIVPDR 615

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-----FIL 801
              E        S+  +L+ G    +      S+            L   ++      I+
Sbjct: 616 TLKEASLLFVTASSMIKLVDGAEFIVQKKTVASTKLAEGDILAAVRLVAAKEGSINAQII 675

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             SE+G+  R    +     +   GIR   + + + I   V +  V + D   ++  +  
Sbjct: 676 MQSEEGYFLRFPLEEVTRKKKGAIGIRGMKLQEDDHIKH-VYLTGVENEDNPSIIYKEKE 734

Query: 862 LIRVPVNEIRIASRATKGVVI 882
           L+    ++IR+  R  KGV +
Sbjct: 735 LV---FSKIRLMGRDGKGVKV 752



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 5/168 (2%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +   ++            D  + +   +         D         +          
Sbjct: 551 LKEYRHIVHCMNTDKICVFTDTGVMHQIKVQDIPSGRLRDKGTPLDNIGNYDSRNEQILL 610

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG--ALVAVFP 846
              +  LKE  +L V+     K     +F +     K + +T +++ + +    LVA   
Sbjct: 611 IVPDRTLKEASLLFVTASSMIKLVDGAEFIVQK---KTVASTKLAEGDILAAVRLVAAKE 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + N QII+ S++G  +R P+ E+    +   G+      +D+ +  V
Sbjct: 668 GSINAQIIMQSEEGYFLRFPLEEVTRKKKGAIGIRGMKLQEDDHIKHV 715


>gi|227547672|ref|ZP_03977721.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
 gi|227211927|gb|EEI79823.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum subsp. infantis ATCC 55813]
          Length = 945

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 270/940 (28%), Positives = 427/940 (45%), Gaps = 101/940 (10%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 37  MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 96

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 97  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 156

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 157 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 215

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 216 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 275

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 276 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 335

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 336 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 395

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 396 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 455

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 456 SRLM--------------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELE 489

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 490 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 549

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +  T      +     V+  
Sbjct: 550 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 609

Query: 593 SSLGFVYKEKVWRLP------IGSPQARGKALINILSLNQGERI-----TTIMPFPEDES 641
           S+ G + +     +           + R   +  I   +             +       
Sbjct: 610 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 669

Query: 642 SWNNLYVVFATKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDEILS 686
                     +  G V+ +                    IAM              E   
Sbjct: 670 LPALPATATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 729

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
                    + + T+ G   R+   A              I L  GD+V+  A+    D 
Sbjct: 730 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAEDDDR 784

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF- 799
                +D        K++  Q R   G      +     +    +   +      + +  
Sbjct: 785 LVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENG 844

Query: 800 --------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL- 841
                   +LTV         +E G  K T    +    R+  G+R+    K      L 
Sbjct: 845 LTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 904

Query: 842 -VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 905 WVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 935


>gi|291457735|ref|ZP_06597125.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
 gi|291380788|gb|EFE88306.1| DNA gyrase subunit A [Bifidobacterium breve DSM 20213]
          Length = 906

 Score =  585 bits (1509), Expect = e-165,   Method: Composition-based stats.
 Identities = 259/893 (29%), Positives = 412/893 (46%), Gaps = 93/893 (10%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ +PD  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHPDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVDGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 TRLMA--------------------------VFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+    D+  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDHVVTSEMDEAVDKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--------------- 579
           +      +S          +   +        +    +  +                   
Sbjct: 514 QGSGTSGISKSALEAVKSATTISSAEADVAAAAAAAKKTGEQSALTGALKIEDEPCVVMM 573

Query: 580 ----LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
               L   +T +++  F+S     +           +   +A   +++      +  ++ 
Sbjct: 574 SATGLIARTTPSAMDVFNSRSASDERLHDDQITTIFRTSTRATYGLVTSAGRLVLAHVVD 633

Query: 636 FPEDESSWNNLYVVFATKHGNVRRN-KLSDFIQINRSGKIAM--------KLDSRDEILS 686
            P   +S              +                 IAM             +    
Sbjct: 634 LPALPASATLSLQGGVQADDLISMTESTDPVRGERVVTAIAMEQSADNGENGGDGETTAE 693

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
            +       + + T+ G   R+   A              I +  GD+V+  A+  + D 
Sbjct: 694 AKPLP---SLAIGTRNGVVKRWNREAPTTMDSWP-----VIDVKDGDEVVFAAVAENDDR 745

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF- 799
                +D        K++  Q R   G      +          +   +      + +  
Sbjct: 746 LVFVSSDSSLLTFDAKNVRPQGRTAGGMAGIKLAEGAHVMAFNVVPAGKVAWTYEEGENG 805

Query: 800 --------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                   +LTV         +E G  K T    +    R+  G+R+    K 
Sbjct: 806 LTSGAGAVVLTVAGDEDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKG 858



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 81/278 (29%), Gaps = 52/278 (18%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +   VV  +  G + R   S     N       +L   D+I ++   +      L T  G
Sbjct: 566 DEPCVVMMSATGLIARTTPSAMDVFNSRSASDERLH-DDQITTIFRTSTRATYGLVTSAG 624

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           + V   +  +       +     GV+       D +ISM                    S
Sbjct: 625 RLVLAHVVDLPALPASATLSLQGGVQA------DDLISMTESTDPVRGERVVTAIAMEQS 678

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR------TS 813
           A      GD E     K   S+                      +  G  KR      T+
Sbjct: 679 ADNGENGGDGETTAEAKPLPSLAIG-------------------TRNGVVKRWNREAPTT 719

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              + +           DV        +V      ++D+++ VS   +L+      +R  
Sbjct: 720 MDSWPV----------IDVKDG---DEVVFAAVAENDDRLVFVSSDSSLLTFDAKNVRPQ 766

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIV---DEAES 908
            R   G+     A+   V++   +   ++    +E E+
Sbjct: 767 GRTAGGMAGIKLAEGAHVMAFNVVPAGKVAWTYEEGEN 804


>gi|298252230|ref|ZP_06976033.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
 gi|297546822|gb|EFH80690.1| DNA topoisomerase (ATP-hydrolyzing) [Ktedonobacter racemifer DSM
           44963]
          Length = 840

 Score =  585 bits (1508), Expect = e-164,   Method: Composition-based stats.
 Identities = 273/921 (29%), Positives = 457/921 (49%), Gaps = 106/921 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     ++++  E GI     +  M  ++ TY ++V+  RA+PD RDGLKPV RRIL GM
Sbjct: 1   MASVSENTEKTVETGIIQEDFSVIMAQAFATYGLSVVTDRALPDARDGLKPVQRRILAGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +     ++  VK A + G ++G YHPHG+ ++YDA  RMAQ +++R  LIEGQGN GS 
Sbjct: 61  REARYLASRPTVKSAEVVGLILGNYHPHGDTSVYDAAVRMAQPFTMRYPLIEGQGNMGSE 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY--DGSFQEPVVLCARYPNVLVNG 178
           DGD PAA RYTE RL   A  L+ D+ ++TV   P Y  D   QEP  L  R P V VN 
Sbjct: 121 DGDAPAAYRYTEMRLSPLAEALMADMERETVPLHPTYKQDPRVQEPDYLPGRIPPV-VNP 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++TNIP HNLGEV+  C+A++D PD+ +D LM  I GPDF  G  I+G  GI+
Sbjct: 180 SSGIAVGLSTNIPPHNLGEVLRACIALLDRPDMTVDELMGYIPGPDFSQGGHIIGTEGIR 239

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD-IA 297
           + + TG+G I++R    +E+ +     +VVT IP    +  +   I +    +++   +A
Sbjct: 240 DYFTTGKGRIIVRAEVRLEE-TPRSRALVVTRIPP-TGRDKVKASIIKAFNARKLEGMMA 297

Query: 298 DLRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN------GYKPE 350
           DLRDESD  +G R+V+EL++   A   L QLYR T LQ   S  MV L         +P+
Sbjct: 298 DLRDESDTEKGTRIVLELRKDVDAAQTLEQLYRETDLQIAISFQMVFLFGSPMQAARQPK 357

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +  ++ +L  + A + +++ RR +Y L KAR+R HV+ GL    A+ +E+V+I + S + 
Sbjct: 358 QTGMLELLNYWNAHQLDLLTRRAQYDLRKARERLHVIEGLITGAAHAEEIVKIFQQSEDR 417

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
            +ARR + +R                            L+E+Q+  I  + L+++T L  
Sbjct: 418 ASARRAIEER--------------------------YSLTEIQSDVIASMTLSQVTKLDS 451

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI----VEGLLD 526
              + E + L   I+E  ++L++R  L+ ++K+E+  +  +    RRT I          
Sbjct: 452 GKYQRERDELQRRIEELENLLANRRALISLLKKEMQQLMRQFADERRTYIDVEGQPHAPI 511

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
                   RE + V  +  G +K +    ++ +++ G       +R ++ +  +   +T 
Sbjct: 512 THVASLHEREPLTVAFAFPGTLKALAPDTFKPKQKNGVLAYN-PVRGDEQLRQVVATTTR 570

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L  SS G V++    RLP+ +  A+G+ + ++L L  GE I  ++P    +    + 
Sbjct: 571 DYLLCMSSTGRVFQVGSHRLPLVTRSAKGEVIRDLLELAPGEEIVAVVPIDAYD---EDR 627

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+V  ++ G V+++ LS++  ++  G   MKL   D +++      + +  +TT   Q +
Sbjct: 628 YMVTFSRLGKVKKSPLSEYKTVDIDGAQDMKLAEGDSVVTALLSRGQGEYFVTTDYAQTL 687

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF   A+R   GR   GV  I+LAKG  V+                              
Sbjct: 688 RFSDEALRA-QGRVGQGVAAIALAKGGGVV------------------------------ 716

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                     +    +G + +E   E+  +   +L V+E+G  K+     +    R+  G
Sbjct: 717 -------VSASYYEPQGTVVDETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQKGRATGG 769

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR----------VPVNEIRIASRA 876
           +     ++I +   ++    VN+ D ++L    G   R          +PV+E++   R 
Sbjct: 770 VVT---TEIGDKDRVLLSMLVNEQDHLLL----GWTGRNGEKGEHALVLPVSEVKAFPRV 822

Query: 877 TKGVVIFSTAKDERVVSVERI 897
            +GV + +     R+++V ++
Sbjct: 823 KQGVEVVN----GRILTVVKL 839



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 104/269 (38%), Gaps = 30/269 (11%)

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDE-ILSVETCTQENDILLTTKLGQCVRFPISAI 713
           G ++      F    ++G +A      DE +  V   T  + +L  +  G+  +     +
Sbjct: 531 GTLKALAPDTFKPKQKNGVLAYNPVRGDEQLRQVVATTTRDYLLCMSSTGRVFQVGSHRL 590

Query: 714 RVFAGRNSVGVRGIS----LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
                R++ G   I     LA G++++++  +   D D             +  L    T
Sbjct: 591 -PLVTRSAKG-EVIRDLLELAPGEEIVAVVPIDAYDEDRYMVTFSRLGKVKKSPLSEYKT 648

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK--RTSSYDFRISNRSGKGI 827
            +I   ++    EG+            E F+ T     + +  R S    R   R G+G+
Sbjct: 649 VDIDGAQDMKLAEGDSVVTALLSRGQGEYFVTTD----YAQTLRFSDEALRAQGRVGQGV 704

Query: 828 RATDVSKINEIGALVAV-------FPVNDN--------DQIILVSDKGTLIRVPVNEIRI 872
            A  ++K    G +V+          V++         + +++V+++GTL +VPV++   
Sbjct: 705 AAIALAKG--GGVVVSASYYEPQGTVVDETTGEVLPELNSLLVVTEQGTLKKVPVSQYPQ 762

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESE 901
             RAT GVV       +RV+    + E +
Sbjct: 763 KGRATGGVVTTEIGDKDRVLLSMLVNEQD 791


>gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
 gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1]
          Length = 752

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 266/743 (35%), Positives = 387/743 (52%), Gaps = 59/743 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H       E   I    +++ +   YL YA++VI  RA+PD+RDGLKPV RR+L+ M
Sbjct: 1   MTVHTAPPGGAEPDRIIDEPLSEALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M +       KCA++ GEVMG YHPHG+ AIYD L RMAQ ++ R  L++GQGNFG++
Sbjct: 61  REMRLNPENAARKCAKVVGEVMGGYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L  AA  LLD + +D VDF+P YDGS  EPVVL A +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEAKLTAAATLLLDGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN GE++D C+ +++NP+   +ALM  ++GPDFPTG  ++  R  +  
Sbjct: 181 GIAVGMATSIPPHNAGELIDACLLLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            YATGRG + +R     E       QIVVTEIPYQV KA ++EK+AEL+  K+   + D+
Sbjct: 241 TYATGRGGVRVRARWTKEDLGKGTYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDV 300

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGI 357
           RDES     R+V+E K R   A+V++  L++ + L++ FSVN+  L+         L   
Sbjct: 301 RDESAE-DVRLVLEPKSRNVEAEVLMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQA 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LKAF+  R EV+VRR ++ L K   R H+L GL IA  NLDEV+RI+R+   P   + +L
Sbjct: 360 LKAFLDHRREVLVRRARHRLEKIEARLHILDGLMIAYLNLDEVIRIVRYEDKP---KEKL 416

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++                          T  LSE+Q  AIL  RL +L  L   +IR E 
Sbjct: 417 IE--------------------------TFSLSEIQADAILNTRLRQLAKLEEMEIRREH 450

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD--TPRRTRIVEGLLDMED---EDC 532
             L  E    L +L+S +    ++ + L  VK EL     RR+   E      +   E  
Sbjct: 451 AELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGKLNDRRSTFGEAPQVDAEAAIEAM 510

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           IVRE + + +S  G++        RA +   +  S +  ++ D +  L    T   +L F
Sbjct: 511 IVREPITIILSERGWI--------RAAKGRIEDPSELKFKEGDKLQFLVPAETTDKLLIF 562

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +S G  +     +LP    +  G+ L  ++ L+    I  + P             + A+
Sbjct: 563 ASDGRFFTLGCDKLPGA--RGHGEPLRLMIDLDDKVGIVDVFP------HKPGAKRLLAS 614

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFP 709
           K G        + I   R+GK  +         E  +V      + I +    G+ + FP
Sbjct: 615 KQGYGFILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGKILVFP 674

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           ++ +         GV+  S  +G
Sbjct: 675 LAELPEMP--RGKGVKLQSYREG 695



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 14/172 (8%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD++  +      D                 +L                 +     
Sbjct: 540 KFKEGDKLQFLVPAETTDKLLIFASDGRFFTLGCDKLPGARGHGEPLRLMIDLDDKVGIV 599

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYD---FRISNRSGKGIRATDVSKINEIGALVAV 844
           +        ++  L  S++G+G      +   FR   R+GK +           GA V  
Sbjct: 600 DVFPHKPGAKR--LLASKQGYGFILPEEEAIAFR---RAGKQVLNAGDPAKKGEGAAV-C 653

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVS 893
            PV   DQI +V D G ++  P+ E+    R  KGV + S  +    + +V 
Sbjct: 654 LPVT-GDQIAVVGDNGKILVFPLAELPEMPR-GKGVKLQSYREGGLRDALVF 703


>gi|218674543|ref|ZP_03524212.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 719

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 471/678 (69%), Positives = 562/678 (82%), Gaps = 1/678 (0%)

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPTGA ILGR GI++AY TGRGS+++RGV+ IE   GDREQI++TEIPYQVNKA M+
Sbjct: 1   GPDFPTGAKILGRAGIRSAYETGRGSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMI 60

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EK+AELVREKRI  I+DLRDESDRQGYRVVIELKR A+A+VILNQLYRYT LQ+ F  NM
Sbjct: 61  EKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTPLQTSFGCNM 120

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           VALNG KPE+ TL+ +L+AFV+FREEVV RRTK+LL KAR+RAHVLVGLAIAVAN+DEV+
Sbjct: 121 VALNGGKPEQLTLLDMLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLAIAVANIDEVI 180

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  D T  LSE Q RAILELR
Sbjct: 181 RVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDMTYNLSEEQARAILELR 240

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           LARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE  TPRRT IV
Sbjct: 241 LARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIV 300

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           +G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF
Sbjct: 301 DGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLF 360

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           +V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+
Sbjct: 361 VVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEA 420

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTT 700
           +W+NL V+F+T  G VRRNKLSDF+Q+NR+GKIAMKL +  DEILSVETCT+ +D+LLTT
Sbjct: 421 NWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEEEGDEILSVETCTERDDVLLTT 480

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
            LGQC+RF +  +RVFAGRNS+GVRGI+L +GD++ISM IV H DA+  ER  Y+K  + 
Sbjct: 481 ALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGDRIISMTIVGHVDAEPWERAAYLKRSAT 540

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +RR    D E+I  +  + + EG +S+ER +ELK +EQF+LTVSEKGFGKR+SSYDFRIS
Sbjct: 541 ERRATGVDEEDIALVGEEVTEEGQLSDERYEELKAREQFVLTVSEKGFGKRSSSYDFRIS 600

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRIASRATKGV
Sbjct: 601 GRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIASRATKGV 660

Query: 881 VIFSTAKDERVVSVERIR 898
            IFSTAKDE+VVSVERI 
Sbjct: 661 TIFSTAKDEKVVSVERIS 678



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 6/144 (4%)

Query: 645 NLYVVFATKHGNVRRNKLSDFI-----QINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
             +V+  ++ G  +R+   DF                K     E+++       + I+L 
Sbjct: 577 EQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLV 636

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  GQ +R P+  IR  A R + GV   S AK ++V+S+  +   + D  E        +
Sbjct: 637 SDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERISEPEEDETEEAVETAEGA 695

Query: 760 AQRRLISGDTEEITSLKNDSSVEG 783
                 S     +        VE 
Sbjct: 696 PVAEEGSVGETPVADGDPAGPVEE 719


>gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
 gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel]
          Length = 738

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 384/760 (50%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KQAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+DD+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMDDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  +++ +M  I+GPDFPTG +I+ +   I  AY+TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWKKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   R     V++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRNCDPQVVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  N DE+++IIR    P+                 
Sbjct: 361 VTRRSTYLLNKIQHRLEILEGLRIAYLNFDEIIKIIREEDEPKA---------------- 404

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L    I NE ++L  +     
Sbjct: 405 -------------IMINWFKLTEIQVEAILNTRLRSLHRLEEQKIINEHSNLKKQQVILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  ++K+E+ +V+ +         RRT   E       ++    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSFKGHNNDLSNIKYKEGDTEKFILKAYTTDKLLIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTEESIKLLVDIGNND---------ITNILVYKPDQLLLLASSIGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ I   ++GK  M + +    ++       + +    +  + + F I  I       
Sbjct: 615 NSNEVIAQTKTGKQIMNVPNGHICITCLPANG-DSVACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KDAKLLDVKIFNKEDGLGWNNNGKVKLEKN 710


>gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium]
          Length = 765

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 237/735 (32%), Positives = 375/735 (51%), Gaps = 54/735 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I   +I  E+++ YL YA++ I+ R++PD+RDGLKPVHRRILF M  + ++    + K
Sbjct: 7   EKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GK+HPHG+ A YDA+ R+AQD++ R  L++GQGNFG+VDGD  AA RYTE 
Sbjct: 67  SARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAMRYTEA 126

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL   A  LL+DL + TVD  P YDGS +EPVVL AR+PN+L NG  GIAVGM+T IP H
Sbjct: 127 RLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPPH 186

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRG 252
           N GEV+   + +I +PD  +  LM+ + GPDFPTG V +     ++  YATGRG + +R 
Sbjct: 187 NAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLRA 246

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
               E       ++VVTEIPY V K  ++E+IA+L+ +++   ++D+RDESD +  R+V+
Sbjct: 247 RWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK-VRIVL 305

Query: 313 ELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
           E + RG   + I+  L++ + L+   +VN+  +    +PE   L G+L+A++  R +V  
Sbjct: 306 EPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQVHT 365

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L + R+R H+L        N+D V+ II+   +P  A                 
Sbjct: 366 RRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPA----------------- 408

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +   Q  A+L LRL  L  L    IR E+        E   +
Sbjct: 409 ------------LMQRFGMDSEQAEAVLNLRLRALRRLEEMSIRKEMGEKEARAAELSAM 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYV 548
           L+  + +   ++ E+   + E    RRTR+     +++   ED I +E +   +S  G++
Sbjct: 457 LADPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDLRPEDLIQKEPLTAVLSRKGWI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   +A +        +  ++ED +       +H +V F ++ G VY     RLP 
Sbjct: 517 --------KALKGHDIDLEKIRFKEEDGLERAVKGYSHQTVTFLAASGKVYSLLGDRLPS 568

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     G+ L  +  L+ G+RI  ++    +            T+ G   R +  D +  
Sbjct: 569 GKRF--GEPLTVLFELDPGDRILWMLAVDPEGEY------FVTTRLGQGFRIRGRDLVAN 620

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R+GK  + L   D+ L V        +   +   + +   +       GR   GVR  +
Sbjct: 621 QRTGKQVVSLREGDQPLHVHPVRGAA-VAAISHGRRLLICRLEEF-PLLGRG-KGVRIQN 677

Query: 729 LAKGDQVISMAIVLH 743
           L +G+ ++       
Sbjct: 678 LGRGEGLVDAMTFDP 692


>gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
 gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford]
          Length = 737

 Score =  585 bits (1507), Expect = e-164,   Method: Composition-based stats.
 Identities = 243/745 (32%), Positives = 385/745 (51%), Gaps = 62/745 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EP+++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P+ +++ +M  I+GPDFPTG +I+ +   I  AY TGRGS  +
Sbjct: 182 PHNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E  S    QIVVTEIPYQV K+ ++E++A L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   R     +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YL+NK + R  +L GL IA  NLDE+++IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEP---KAIMMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEHEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT   E       ++    + +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKAVQMQFGLNTVIGDRRTSFEEVTLTNQVVDITAFVTKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSNIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +P G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNIPKGKGTGESIKLLVDIGNND---------ITNILVHKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ I   ++GK  M +      +        + +    +  + + F +  I       
Sbjct: 615 NSNEVIAQTKTGKQVMNVPDGHACI-ACLHVAGDAVACIGESRKLLVFNVDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHAD 745
             GV      K  +++ + I    D
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKED 695


>gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
 gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246]
          Length = 738

 Score =  584 bits (1506), Expect = e-164,   Method: Composition-based stats.
 Identities = 246/760 (32%), Positives = 389/760 (51%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L+ D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEP---KAIMMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRLLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT   E       ++    I++E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFIIKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|315502966|ref|YP_004081853.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
 gi|315409585|gb|ADU07702.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora sp. L5]
          Length = 829

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 278/854 (32%), Positives = 400/854 (46%), Gaps = 104/854 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +  +++ ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M 
Sbjct: 9   AKADLAAFDQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMH 68

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G   ++ +VK ARI G+VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D
Sbjct: 69  EQGHRPDRGHVKSARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD 128

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE R+ + A  L  +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  G
Sbjct: 129 -DGPAAARYTEARMSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASG 187

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY
Sbjct: 188 IAVGMATNMIPHNLGEVVQAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAY 247

Query: 242 ATGRGSIVIRGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIAD 298
            TGRG + +RG       + S  R+ I VTE+PY V    ++  I   V + KR+  IAD
Sbjct: 248 ETGRGVVRMRGRVEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIAD 307

Query: 299 LRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++D +DR  G R+V+E K G +   +L  LYR T L+  F VN + L   +P    L  +
Sbjct: 308 VKDLTDRENGTRLVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKEL 367

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+A R EVV RR+ Y   K  +R H++ GL IA+ ++D VV++IR S + + A+  L
Sbjct: 368 LDVFLAHRYEVVTRRSAYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGL 427

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           MQR                            LSE+Q   IL+  L RLT   R ++  E 
Sbjct: 428 MQR--------------------------FKLSEIQATYILDTPLRRLTKYDRLELEAEQ 461

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--- 534
             L  EI E   IL     L  ++  EL +V  +   PRRT +V+G L       +    
Sbjct: 462 EKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGAPRRTTLVDGDLKEVLAASVPAGP 521

Query: 535 ----REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +   V +S  G V R             + R        D V  +   +    VL
Sbjct: 522 LEVADDPCQVILSATGLVARTAAE----SEEAAEARRRSGRVKHDAVRAIVHSTARGRVL 577

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWN 644
             +S G  +K  V  LP+   Q        G +   ++ L  GE +  + P     S+  
Sbjct: 578 LVTSAGRAFKIDVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGETVVGLAPLG--PSAQG 635

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLG 703
           +  +   T+ G V+       +         + L   DE++           +   +   
Sbjct: 636 SPGLALGTRAGVVKVCAPDWPV--RSDEFEVISLRDGDEVIGATWLTDGAETLAFVSSEA 693

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF  S +R   G    G+ GI+L  G + +    +   D+ + E             
Sbjct: 694 SLLRFAASVVRP-QGLKGGGMAGINLPAGARAVFFGAIRTDDSKHGEP------------ 740

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNR 822
                                                + V+  G   K T    +    R
Sbjct: 741 -------------------------------------MVVTSTGATVKVTPFKAYPAKGR 763

Query: 823 SGKGIRATDVSKIN 836
           +  G+RA    K  
Sbjct: 764 ATGGVRAQRFLKGE 777



 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 22/217 (10%)

Query: 696 ILLTTKLGQCVRF---PISAIRVFAGRNS-VGVRGIS------LAKGDQVISMAIVLHAD 745
           +LL T  G+  +    P+  +   +G  S  G  G+S      L  G+ V+ +A +    
Sbjct: 576 VLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRG--GMSAAELVPLEPGETVVGLAPLGP-- 631

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           +        +   +   ++ + D    +      S+           L    + +  VS 
Sbjct: 632 SAQGSPGLALGTRAGVVKVCAPDWPVRSDEFEVISLRDGDEVIGATWLTDGAETLAFVSS 691

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGT 861
           +    R ++   R     G G+   ++         V    +  +D    + ++V+  G 
Sbjct: 692 EASLLRFAASVVRPQGLKGGGMAGINLPAGARA---VFFGAIRTDDSKHGEPMVVTSTGA 748

Query: 862 LIR-VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++  P        RAT GV      K E  +SV  I
Sbjct: 749 TVKVTPFKAYPAKGRATGGVRAQRFLKGELELSVAWI 785


>gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
 gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025]
          Length = 767

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/742 (35%), Positives = 394/742 (53%), Gaps = 39/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     D  EE   TS  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTDT--PEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +P++L NG  
Sbjct: 119 DGDNPAASRYTEARLTPIAELLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E+++GC+A+I +P I  +AL+ +I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNLDELIEGCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRG+  +R     E       QIVVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 GYRTGRGAFRLRAKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E + R    ++++  L+R + L+  FS+NM   ++G  P+  +L  +
Sbjct: 299 RDESA-DDVRIVLEPRARTVDPEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV++RR+++ + K   R  VL GL +A  NLD V+ IIR+   P+ A    
Sbjct: 358 LRAFLDHRREVLIRRSEHRMEKIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEPKRA---- 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                  +  +       +  Y     G   L+EVQ  AIL +RL  L  L   ++  E 
Sbjct: 414 ---LMAETWGRKFKRATSEKDYVGPGAGPGELTEVQAEAILNMRLRSLRRLEEMELLAER 470

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED--E 530
           ++L  E  +  D++ S  R    I  +L  ++           RRT+  E     E   E
Sbjct: 471 DALTAERADLADLVGSEPRQWERIGADLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLE 530

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA +      S V  +D D    +F   T   +L
Sbjct: 531 AMIEREPITVICSKMGWI--------RAMKGHQPLGSEVKFKDGDGPRFMFHAETTDRLL 582

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  Y      LP G  +  G+ +  ++ L     I  ++             ++ 
Sbjct: 583 LVGSNGRFYTLTGASLPGG--RGMGEPVRLMVDLPNEAEIADLI------IWRPGEKLLL 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + +   R+GK  + +               + + +  +  + + FP+
Sbjct: 635 ASSAGDGFVVPSEEVLAQTRAGKAVLSMKDGVTTAVCRPIRG-DHVAVVGQNRKLLVFPL 693

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +   A     GVR      G
Sbjct: 694 SELPEMA--RGKGVRLQKYKDG 713



 Score = 44.0 bits (102), Expect = 0.13,   Method: Composition-based stats.
 Identities = 63/480 (13%), Positives = 128/480 (26%), Gaps = 28/480 (5%)

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             +    E+  +   +  I+ L +LI        +D     S    R +LE R   +   
Sbjct: 262 TWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDE-SADDVRIVLEPRARTVDPE 320

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               +    + L +     +++L             L  V       RR  ++       
Sbjct: 321 MLMGMLFRNSDLEVRFSMNMNVLIDG---RTPKVCSLKEVLRAFLDHRREVLIRRSEHRM 377

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           ++     E +   +     + R  +          K           F       S    
Sbjct: 378 EKIDHRLEVLGGLIVAFLNLDR--VIDIIRYDEEPKRALMAETWGRKFKRA---TSEKDY 432

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V   +  G + + +   +     ++  +     L   +           +   S    + 
Sbjct: 433 VGPGAGPGELTEVQAEAILNMRLRSLRRLEEMELLAERDALTAERADLADLVGSEPRQWE 492

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
                 G +R+      +   R  + A   +  +  L      +   ++  +K+G     
Sbjct: 493 RIGADLGEIRKLFGKWTVAGARRTQFAEAGEVEEVPLEAMIEREPITVIC-SKMGW---- 547

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               IR   G   +G   +    GD    M        D    +                
Sbjct: 548 ----IRAMKGHQPLGSE-VKFKDGDGPRFM--FHAETTDRLLLVGSNGRFYTLTGASLPG 600

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
              +           N +E     +    + +L  S  G G    S +     R+GK + 
Sbjct: 601 GRGMGEPVRLMVDLPNEAEIADLIIWRPGEKLLLASSAGDGFVVPSEEVLAQTRAGKAVL 660

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +         G   AV      D + +V     L+  P++E+   +R  KGV +      
Sbjct: 661 SMK------DGVTTAVCRPIRGDHVAVVGQNRKLLVFPLSELPEMAR-GKGVRLQKYKDG 713


>gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
 gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM]
          Length = 768

 Score =  584 bits (1505), Expect = e-164,   Method: Composition-based stats.
 Identities = 258/742 (34%), Positives = 389/742 (52%), Gaps = 38/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   D+  +    +  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRI++ M
Sbjct: 1   MNDLLDDPDQAPQA--VAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLGSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VDFR NYDG+  EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLEGLAENAVDFRDNYDGTLTEPVVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L+  + GPDFPTG +I+     I  
Sbjct: 179 GIAVGMATNIPPHNIPELVDACLHLIKVPDARDDTLLNYVPGPDFPTGGIIVEPRENIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRCRYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     RV++E + +    +V++  LYR T L+  FS+NM   ++G  P+  ++  +
Sbjct: 299 RDESA-DDIRVILEPRSKNVDPEVLMGMLYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+ FR EV+ RR+ + + K   R  VL GL +A  NLD V+ IIR+  +P   +  L
Sbjct: 358 LRAFLDFRREVLQRRSVHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDEDP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+  W    ++ + +           DG   L+EVQ  A+L +RL  L  L    +  E 
Sbjct: 415 MREDWGRDFVRAMDEADYVPPAPGAPDG---LTEVQAEAVLNMRLRALRRLEEMALVKER 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME--DE 530
           ++L  E     D+L S       I  +L   K           RRT   E     E   E
Sbjct: 472 DALMEERAGLEDLLESEDLQWAAISDQLREAKKTFGKDYEGGARRTTFAEAGEVEEVPIE 531

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA          +  +D D  + +F   T   +L
Sbjct: 532 AMIEREPITVVCSQMGWI--------RAMTGHIDLGRELKFKDGDGPSFMFHAETTDRLL 583

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G  Y      LP G  +  G+ L  ++ L             +         ++ 
Sbjct: 584 VFASTGRFYTISAANLPGG--RGMGEPLRLMVDLPNEAE------IIDIFIHKPGGKMLL 635

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + +   R+GK  + +   D    V      + + +  +  + + FP+
Sbjct: 636 ASSAGDGFVVPEEELLAQTRTGKQVLNVR-GDTRARVCKPVSGDHVAVVGENRKVLVFPL 694

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +    GR   GVR      G
Sbjct: 695 DELPEM-GRG-KGVRLQKYKDG 714



 Score = 46.7 bits (109), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    D+    R    A   +  +  +      +   ++  +++G         IR   
Sbjct: 503 KKTFGKDYEGGARRTTFAEAGEVEEVPIEAMIEREPITVVC-SQMGW--------IRAMT 553

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +G R +    GD    M        D                        +     
Sbjct: 554 GHIDLG-RELKFKDGDGPSFM--FHAETTDRLLVFASTGRFYTISAANLPGGRGMGEPLR 610

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                 N +E     +      +L  S  G G      +     R+GK +          
Sbjct: 611 LMVDLPNEAEIIDIFIHKPGGKMLLASSAGDGFVVPEEELLAQTRTGKQVLNVRGDTRAR 670

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +       PV+  D + +V +   ++  P++E+    R  KGV +      
Sbjct: 671 V-----CKPVS-GDHVAVVGENRKVLVFPLDELPEMGR-GKGVRLQKYKDG 714


>gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571]
 gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans
           ORS 571]
          Length = 745

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 244/743 (32%), Positives = 383/743 (51%), Gaps = 63/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M    +         +  V +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL  M
Sbjct: 1   MATKTLPPGG---GSVEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+V+GK+HPHG+ A+YDAL R+AQD++ R  L++GQGNFG+V
Sbjct: 58  RQLKLDPGSGFKKCARVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD +  D VDFRP YDGS +EPVVL A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTEARLTETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E++D  + ++++P+     L++ + GPDFPTG + +    G   
Sbjct: 178 GIAVGMATSIPPHNAAELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+  +R   H E+T      +VVTEIPY V K+ ++EKIAEL+ +K++  +AD+
Sbjct: 238 AYATGRGAFRVRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E + R   A+V++  L++ T L+S  S+NM  L   + P+  +L   
Sbjct: 298 RDESAE-DIRLVLEPRARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R EV++RR++  L++   R  VL G  IA  NLDEV+RIIR    P+      
Sbjct: 357 LREWLDHRREVLLRRSRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                  +    T  L+++Q  +IL +RL  L  L   ++R E 
Sbjct: 411 -----------------------VELMRTFELTDLQAESILNMRLRSLRRLEEMELRKEH 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---D 529
            +L  E ++   +++S +     I +E+   +           RRT         E    
Sbjct: 448 AALTKEQEQLNKLVASEAAQWKAIGKEIRETRKTYGPDTEIGRRRTDFAVPPDVHESAFT 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + + +S  G++        RA +      +GV  + +D +   F   T + +
Sbjct: 508 EALVEREPITIVMSAKGWI--------RALKGHVADVTGVPFKGDDTLAHAFYAETTSKI 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +  SS G  +     +LP G  +  G+ +  ++ L Q   I ++              ++
Sbjct: 560 MVLSSNGRFFTLDAAKLPGG--RGHGEPVRLMIELEQEAEIVSVFA------HRPGGKLI 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A++ G        D +   R GK  + +D+ D  +        + + +     + + FP
Sbjct: 612 VASREGRGFVVAEDDCLANTRKGKQVLGVDAPDAAVLAVPADG-DTVAVIGDNRKLLLFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           I+ +         GVR     +G
Sbjct: 671 IAQVPEMT--RGRGVRLQRYKEG 691


>gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5]
 gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5]
          Length = 738

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 389/760 (51%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDG+  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAP---KAIMMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT   E       ++    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
 gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7]
          Length = 738

 Score =  584 bits (1504), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 388/760 (51%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  + ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YDGS  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +I++P  +++ ++  ++GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+         
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEP---KAIMME--------- 408

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL  RL  L  L   +I NE ++L  +     
Sbjct: 409 -----------------WFKLTEIQVEAILNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  I+K+E+ +V+ +         RRT   E       ++    I +E + +
Sbjct: 452 EILNNPKELWKIVKKEIKTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|295395841|ref|ZP_06806029.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971376|gb|EFG47263.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 854

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 262/830 (31%), Positives = 387/830 (46%), Gaps = 93/830 (11%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V ++ EM++S+L YA +VI  RA+PD RDGLKPV RRI++ M  MG+  ++ +VK
Sbjct: 3   DHIVDVDVSQEMESSFLEYAYSVIYSRALPDARDGLKPVQRRIIYQMGDMGLRPDRPHVK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            +RI G+VMGK HPH + AIYDAL R++QD+ +R+ L++G GNFG++D D PAA RYTE 
Sbjct: 63  SSRIVGDVMGKLHPHSDVAIYDALVRLSQDFVMRVPLVDGHGNFGTLD-DGPAAPRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL  AA  ++  L +D VDF PNYD S  +P VL + +PN+LVNG  GIAVGMATN+  H
Sbjct: 122 RLDDAALTMIAGLDEDVVDFVPNYDNSLTQPEVLPSAFPNLLVNGASGIAVGMATNMAPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N GEV+     +I+NP   +  LM  + GPD PTG  I+G   I+ AY TGRG+   R  
Sbjct: 182 NPGEVIAAARHLIENPQATVSELMRYVPGPDLPTGGRIIGLDSIREAYETGRGTFRTRAT 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
              E  +  R+ IVVTE+PY V    ++EK+ + V+ KR+  IA + D SDR  G R+VI
Sbjct: 242 VKFENITARRKGIVVTELPYLVGPERVIEKVKDQVQAKRLTGIASIDDYSDRKHGLRLVI 301

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            +K G + + +L +LYR T ++  F +N V L   +P    L  +L+ FV  R  +  RR
Sbjct: 302 GIKNGFNPEAVLEELYRLTPMEDSFGINNVCLVEGQPRTLGLKPLLEVFVDHRISITRRR 361

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T + L KA+DR H++ GL IA+ ++DEVV++IR S +   AR  LM              
Sbjct: 362 TVFQLGKAKDRLHLVEGLLIAILDIDEVVQLIRSSDDATQARTRLM-------------- 407

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL+L+L RLT   R ++  E + L   I+    IL 
Sbjct: 408 ------------DVFDLSEIQATYILDLQLRRLTKFSRIELEAERDELKSRIEYLQGILD 455

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED------CIVREDMVVTVSHLG 546
              +L  ++  EL    D +D+PRRT +VEG L             +  E   V  S   
Sbjct: 456 DDDKLRALVSDELQETSDRIDSPRRTVLVEGNLKELRAAKKGTKLTVADEPCWVLFSTSQ 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            + R                +       D +      ++ +++   ++ G V    V  L
Sbjct: 516 RLARTTGQE--------PLSAQGRRASHDALVSQIATTSRSTIAAVTNTGRVVGVDVVSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P   PQA    +   + +++   +                  V  TK G ++R   +   
Sbjct: 568 PQLPPQAARPTVAGGVRVSEYFTLEKNEKVIGLIDPERE--CVVGTKQGVIKRINGN--- 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              + G   + L  +DEI+ +        +  +  T   Q + F +  +R   G  + GV
Sbjct: 623 DQFKDGSTLINLKPKDEIVGLAQPEDLNTHSAVFITSNAQLLAFDLEGVRA-QGYAASGV 681

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
            GI +A    VI    V     +    I    +   +                       
Sbjct: 682 AGIRVASDAHVIGFYAVDSHQPNQVVTIATGVNFDGKPTQSI------------------ 723

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    K +   +F    R   G+RA    K
Sbjct: 724 -------------------------KVSDFNEFPHKGRGTGGVRAHRFLK 748



 Score = 40.9 bits (94), Expect = 0.92,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 63/224 (28%), Gaps = 35/224 (15%)

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           KL   DE   V          L +   +  R          GR +           D ++
Sbjct: 499 KLTVADEPCWV----------LFSTSQRLARTTGQEPLSAQGRRAS---------HDALV 539

Query: 737 SMAIVLH----ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           S          A      R+  +  +S  +         +      S        E+   
Sbjct: 540 SQIATTSRSTIAAVTNTGRVVGVDVVSLPQLPPQAARPTVAGGVRVSEYFTLEKNEKVIG 599

Query: 793 LKLKEQFILTVSEKGFGKRTS-SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-- 849
           L   E+  +  +++G  KR + +  F+       G    ++        +V +    D  
Sbjct: 600 LIDPERECVVGTKQGVIKRINGNDQFKD------GSTLINLKPK---DEIVGLAQPEDLN 650

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               + ++    L+   +  +R    A  GV     A D  V+ 
Sbjct: 651 THSAVFITSNAQLLAFDLEGVRAQGYAASGVAGIRVASDAHVIG 694


>gi|213691857|ref|YP_002322443.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|213523318|gb|ACJ52065.1| DNA gyrase/topoisomerase IV, subunit A [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457952|dbj|BAJ68573.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 909

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 273/943 (28%), Positives = 430/943 (45%), Gaps = 107/943 (11%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  +  Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDHPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG+   R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTFTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLM--------------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +         +     V+  
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSALTGALKIEDEPCVVMM 573

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA- 651
           S+ G + +     + + + +    A    L  +Q   I             +   +V A 
Sbjct: 574 SATGLIARTTPSAMDVFNAR---SASDERLRDDQITTIFETSTRATYGLVTSAGRLVLAH 630

Query: 652 -------------TKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDE 683
                        +  G V+ +                    IAM              E
Sbjct: 631 VVDLPALPAAATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKASAKDESE 690

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                       + + T+ G   R+   A              I L  GD+V+  A+   
Sbjct: 691 DGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAED 745

Query: 744 AD------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            D      +D        K++  Q R   G      +     +    +   +      + 
Sbjct: 746 DDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEG 805

Query: 798 QF---------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +          +LTV         +E G  K T    +    R+  G+R+    K     
Sbjct: 806 ENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTL 865

Query: 840 AL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            L  V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 866 ILAWVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 899


>gi|322689392|ref|YP_004209126.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460728|dbj|BAJ71348.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 909

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 264/896 (29%), Positives = 413/896 (46%), Gaps = 96/896 (10%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLM--------------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +  T      +     V+  
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA- 651
           S+ G + +     + + + ++        L  +Q   I             +   +V A 
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSD---ERLRDDQITTIFETSTRATYGLVTSAGRLVLAH 630

Query: 652 -------------TKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDE 683
                        +  G V+ +                    IAM              E
Sbjct: 631 VVDLPALPAAATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESE 690

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                       + + T+ G   R+   A              I L  GD+V+  A+   
Sbjct: 691 DGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAED 745

Query: 744 AD------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            D      +D        K++  Q R   G      +     +    +   +      + 
Sbjct: 746 DDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEG 805

Query: 798 QF---------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
           +          +LTV         +E G  K T    +    R+  G+R+    K 
Sbjct: 806 ENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKG 861


>gi|189439166|ref|YP_001954247.1| DNA topoisomerase IV subunit A [Bifidobacterium longum DJO10A]
 gi|239621283|ref|ZP_04664314.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132598|ref|YP_003999937.1| para [Bifidobacterium longum subsp. longum BBMN68]
 gi|322691358|ref|YP_004220928.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|189427601|gb|ACD97749.1| DNA topoisomerase plasmid partition protein A [Bifidobacterium
           longum DJO10A]
 gi|239515744|gb|EEQ55611.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773543|gb|ADQ03031.1| ParA [Bifidobacterium longum subsp. longum BBMN68]
 gi|320456214|dbj|BAJ66836.1| DNA topoisomerase IV subunit A [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 909

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 270/940 (28%), Positives = 427/940 (45%), Gaps = 101/940 (10%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLM--------------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +  T      +     V+  
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 593 SSLGFVYKEKVWRLP------IGSPQARGKALINILSLNQGERI-----TTIMPFPEDES 641
           S+ G + +     +           + R   +  I   +             +       
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 642 SWNNLYVVFATKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDEILS 686
                     +  G V+ +                    IAM              E   
Sbjct: 634 LPALPATATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 693

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
                    + + T+ G   R+   A              I L  GD+V+  A+    D 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAEDDDR 748

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF- 799
                +D        K++  Q R   G      +     +    +   +      + +  
Sbjct: 749 LVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENG 808

Query: 800 --------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL- 841
                   +LTV         +E G  K T    +    R+  G+R+    K      L 
Sbjct: 809 LTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868

Query: 842 -VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 869 WVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 899


>gi|323484277|ref|ZP_08089645.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
 gi|323402429|gb|EGA94759.1| hypothetical protein HMPREF9474_01396 [Clostridium symbiosum
           WAL-14163]
          Length = 746

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 261/728 (35%), Positives = 406/728 (55%), Gaps = 30/728 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAEEVYLKDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD  +A IDNP+     L++I+ GPDFPTG +I  ++ + N Y TG G I +R 
Sbjct: 182 HNLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIANKSDLLNIYETGSGRIKLRA 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              +E  K   D+++++++EIPY +  A + +    IA+LV  K++ D+ D+ ++S+++G
Sbjct: 242 KLEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + I N LY+ T L+  F VNM+A+ G +PE  TL GILK ++ F+ E
Sbjct: 302 IRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIAGGRPETLTLKGILKNYLDFQYE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
              R+   LL K  ++  +  GL  A   +D ++ I+R S N + A+  LM+   + S+I
Sbjct: 362 NNTRKYNVLLEKELEKKEIREGLIKACDVIDLIIAILRGSKNLKDAKACLME--GDISNI 419

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                  D+ +        +  +E Q  AILE+RL +L GL    +  E      +IKE 
Sbjct: 420 HFKTPGFDEDARK------LRFTEKQASAILEMRLYKLIGLEILALEKEYKETLRKIKEY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             ILSS+  +  +IK++L  +K E  TPRRT I +G   + DE  +   ++V  +   GY
Sbjct: 474 EKILSSKLTMDDVIKKDLEEIKAEFATPRRTLIEDGKEAVYDETAVEIREVVFVMDKFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K V  + Y   +             E     +        +  F+  G +++ K   +P
Sbjct: 534 GKLVDRATYDRNQET----------IEGENPHVIPCLNTDKICLFTDTGLLHQVKASDIP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  + +G  + N+   +  +     +    + S+     ++FATK   V+     +F  
Sbjct: 584 FGKMRDKGTPVDNLCKFDGTKERPIFII---NASALVGRRLLFATKGAMVKLVPGEEFET 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N     A KL   D ++S++      + +L T  G  +RF +  I     +NS GVRGI
Sbjct: 641 -NNRMVAATKLQDGDMVVSIQLTDGRTEAVLQTTNGVFLRFDLEEISTLK-KNSKGVRGI 698

Query: 728 SLAKGDQV 735
            L +G+++
Sbjct: 699 KLGRGEEL 706



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  ++    K     +F  +NR          +K+ +   +V++   +   + +L +  
Sbjct: 621 LLFATKGAMVKLVPGEEFETNNR------MVAATKLQDGDMVVSIQLTDGRTEAVLQTTN 674

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           G  +R  + EI    + +KGV      + E +
Sbjct: 675 GVFLRFDLEEISTLKKNSKGVRGIKLGRGEEL 706


>gi|23465992|ref|NP_696595.1| DNA topoisomerase IV subunit A [Bifidobacterium longum NCC2705]
 gi|23326709|gb|AAN25231.1| DNA gyrase subunit A [Bifidobacterium longum NCC2705]
          Length = 909

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 273/943 (28%), Positives = 433/943 (45%), Gaps = 107/943 (11%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLM--------------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +  T      +     V+  
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA- 651
           S+ G + +     + + + ++        L  +Q   I             +   +V A 
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSD---ERLRDDQITTIFETSTRATYGLVTSAGRLVLAH 630

Query: 652 -------------TKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDE 683
                        +  G V+ +                    IAM              E
Sbjct: 631 VVDLPALPAAATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESE 690

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
                       + + T+ G   R+   A              I L  GD+V+  A+   
Sbjct: 691 DGGAAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAED 745

Query: 744 AD------ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            D      +D        K++  Q R   G      +     +    +   +      + 
Sbjct: 746 DDRLVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEG 805

Query: 798 QF---------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           +          +LTV         +E G  K T    +    R+  G+R+    K     
Sbjct: 806 ENGLTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTL 865

Query: 840 AL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            L  V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 866 ILAWVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 899


>gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 738

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 245/761 (32%), Positives = 385/761 (50%), Gaps = 63/761 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFRP YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAV-IDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
            HNL E+ D  V +   +P  +++ +M  I+GPDFPTG +I+ +   I  AY TGRGS+ 
Sbjct: 182 PHNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLR 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R
Sbjct: 242 VRSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIR 300

Query: 310 VVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREE 367
           ++IE   R     +++  L++ T+L+S   +NM  +     P    ++ +L+ F+A R+ 
Sbjct: 301 LIIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQN 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+R       
Sbjct: 361 IVTRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEP---KAIMMER------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+E+Q  AIL  RL  L  L   +I NE  +L  +    
Sbjct: 411 -------------------FKLTEIQVEAILNTRLRSLRKLEEQEIINEHGNLQKQQAIL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMV 539
            +IL++   L  ++K+E+ +V+ +         RRT   E       ++    I +E + 
Sbjct: 452 EEILNNPKELWKVVKKEIKAVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPIT 511

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +  S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  +
Sbjct: 512 IICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFF 563

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 +  G        L+  +  N                   +  ++ A+  G    
Sbjct: 564 TLLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFL 614

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
              ++ +   ++GK  M +      ++       + I    +  + + F I  I      
Sbjct: 615 VNSNEVMAQTKTGKQIMNIPDGHACIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK-- 671

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
              GV      K  +++ + I    D         +K    
Sbjct: 672 KGQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 711


>gi|317482444|ref|ZP_07941461.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916104|gb|EFV37509.1| topoisomerase IV [Bifidobacterium sp. 12_1_47BFAA]
          Length = 909

 Score =  583 bits (1503), Expect = e-164,   Method: Composition-based stats.
 Identities = 270/940 (28%), Positives = 427/940 (45%), Gaps = 101/940 (10%)

Query: 1   MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1   MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M +M +  ++ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G G
Sbjct: 61  IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHG 120

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+D D PAA RYTE RL  AA  +  D+ +DTVDF PNYD   +EP VL A  PN+L
Sbjct: 121 NFGSLD-DGPAASRYTEARLGPAALGMNADIDEDTVDFTPNYDNKLKEPTVLPAAIPNLL 179

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNGG GIAVGMATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR 
Sbjct: 180 VNGGSGIAVGMATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRD 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AYATGRG++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  
Sbjct: 240 GIREAYATGRGTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEG 299

Query: 296 IADLRDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           I+   D +D   G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L
Sbjct: 300 ISGAFDLTDRHNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGL 359

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ +V  R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+
Sbjct: 360 KEMLQVWVDHRRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAK 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM                              L EVQ + IL+LRL RLT + R ++ 
Sbjct: 420 SRLM--------------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELE 453

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            E + L   I+E   IL+S   L  ++  E+     +  +PRRT +++   D      + 
Sbjct: 454 AERDDLKKRIEELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVA 513

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFF 592
           +      VS          +   +        +    +  +  T      +     V+  
Sbjct: 514 QGAGASGVSKSALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMM 573

Query: 593 SSLGFVYKEKVWRLP------IGSPQARGKALINILSLNQGERI-----TTIMPFPEDES 641
           S+ G + +     +           + R   +  I   +             +       
Sbjct: 574 SATGLIARTTPSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVD 633

Query: 642 SWNNLYVVFATKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDEILS 686
                     +  G V+ +                    IAM              E   
Sbjct: 634 LPALPATATLSLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGG 693

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD- 745
                    + + T+ G   R+   A              I L  GD+V+  A+    D 
Sbjct: 694 AAEAKPLPSLAIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAEDDDR 748

Query: 746 -----ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF- 799
                +D        K++  Q R   G      +     +    +   +      + +  
Sbjct: 749 LVFISSDSSLLTFEAKNVRPQGRTAGGMAGIKLAKGARVAAFNVVPAGKVAWTYEEGENG 808

Query: 800 --------ILTV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL- 841
                   +LTV         +E G  K T    +    R+  G+R+    K      L 
Sbjct: 809 LTSGSGAVVLTVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILA 868

Query: 842 -VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            V ++P++ +      +  G+ + +P  ++R   R   GV
Sbjct: 869 WVGLYPLHAS------TSAGSPVELPKPDMR---RDGSGV 899


>gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
 gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150]
          Length = 769

 Score =  582 bits (1501), Expect = e-164,   Method: Composition-based stats.
 Identities = 264/742 (35%), Positives = 399/742 (53%), Gaps = 37/742 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I   D  E +   +  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MNDTIDPVDTPETE--ITEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  NRLRLSASGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VD+R NYDG  +EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTVVAEAMLEGLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGST 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+ E+ D C+ +I +P+   + L++ + GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNVAELCDACLHLIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E       QIVVTEIPYQV K+ ++EK+AE++  K+I  + D+
Sbjct: 239 AYRTGRGSFRLRCKWETEDLGRGMWQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+++E K +    DV++N LYR + L+  FS+NM   ++G  P+  +L  +
Sbjct: 299 RDESA-DDVRIILEPKSKNVDPDVLMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R++V+ RR+++ ++K   R  VL G  IA  NLD V+ IIR+  +P   +  L
Sbjct: 358 LRAFIDHRQDVLKRRSQHRIDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+ +W    ++   +   D      +D    LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 415 MRENWAQEFVRATSE--SDYRSPAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRER 472

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME--DE 530
           ++L  E     D+LS        I ++L   +           RR++  E     E   E
Sbjct: 473 DALMEERANLDDLLSDERLQWAKISEQLRETRKTFGKNYEGGARRSQFAEAGEVEEVPIE 532

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G+V        RA +      S V  +D D    +F   T   +L
Sbjct: 533 AMIEREPITVVCSKMGWV--------RALKGHADLTSKVKFKDGDEARFMFHAETTDRLL 584

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G  +  G+ L  ++ L     I  I+          +  ++ 
Sbjct: 585 IFGSNGRFYTLGANNLPGG--RGMGEPLRLMVDLPNEAEIVDIL------IHQPDRKLLV 636

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+      +D I   RSGK  + +        V +  + + +    +  + + FP+
Sbjct: 637 ASTAGDGFIVPENDVIAQTRSGKQVLNVKEGVRA-FVLSPVKGDHLACVGENRKVLAFPL 695

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +    GR   GVR      G
Sbjct: 696 TELPEM-GRG-KGVRLQKYKDG 715


>gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
 gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2]
          Length = 780

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 277/832 (33%), Positives = 413/832 (49%), Gaps = 64/832 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   +     +    + ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDDSDTGLGPND---VTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 58  SRLRLSPSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L +D+VDFR NYDG   EP VL A +PN+L NG  
Sbjct: 118 DGDNPAASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E++D C+ +I  PD   D L+  I GPDFPTG  I+     I  
Sbjct: 178 GIAVGMATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E       QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 238 AYRTGRGSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     RVV+E + +    +V++  L+R + L++ FS+NM   ++G  P+  +L  +
Sbjct: 298 RDESA-DDIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEV 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V+VRR+KY L K   R  VL G  IA  +LD V+ IIR+  +P+ A   L
Sbjct: 357 LRAFLEHRRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKA---L 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M   W    ++   +    S    G+D  + LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 414 MIEDWAQDHVRATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAER 473

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--E 530
           ++L  E     D+L S       I ++L   +           RRT+  E    +E   E
Sbjct: 474 DALMEERAGIEDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAEAAEVVEVPLE 533

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G+V        RA          +  +D D    +F   T   +L
Sbjct: 534 AMIEREPITVVCSQMGWV--------RAMTGHIDLTRELKFKDGDGPRFIFHAETTDKLL 585

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F + G  Y      LP G  +  G+ L  ++ L             +         ++ 
Sbjct: 586 VFGANGRFYTVGAANLPGG--RGMGEPLRLMIDLPNDVE------IVDFLIHKPGEKLLV 637

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  GN       + +   RSGK  + +   D I  V      + + + ++  + + F +
Sbjct: 638 ASAEGNGFVVPEEEVVAQTRSGKQVLNVK--DTIAKVCHRVVGDHVAVVSENAKFLVFEV 695

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             +         GVR     K      M  +    +D            A     +    
Sbjct: 696 GELPEMN--RGKGVRIQKYKKASGRQGMLELDGGLSDITTFTWDDGLSWAMGGGKTRTEP 753

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           ++T  K   +                          G GKR   Y F  +NR
Sbjct: 754 DMTDWKGARA--------------------------GVGKR-PPYGFPKNNR 778



 Score = 44.4 bits (103), Expect = 0.100,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 13/176 (7%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   G   +  R +    GD       + HA+      +             +      
Sbjct: 551 VRAMTGHIDL-TRELKFKDGD---GPRFIFHAETTDKLLVFGANGRFYTVGAANLPGGRG 606

Query: 773 TSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                   ++     E    L     + +L  S +G G      +     RSGK +    
Sbjct: 607 MGEPLRLMIDLPNDVEIVDFLIHKPGEKLLVASAEGNGFVVPEEEVVAQTRSGKQVLNVK 666

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +       +V        D + +VS+    +   V E+   +R  KGV I    K
Sbjct: 667 DTIAKVCHRVVG-------DHVAVVSENAKFLVFEVGELPEMNR-GKGVRIQKYKK 714


>gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
 gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217]
          Length = 768

 Score =  582 bits (1500), Expect = e-163,   Method: Composition-based stats.
 Identities = 257/742 (34%), Positives = 392/742 (52%), Gaps = 38/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +   + + E    S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDLLDDPNMQPEA--VSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L +D VDFR NYDG+ +EP+VL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPIVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HN+ E++D C+ +I +PD   + L+  I GPDFPTG  ++     I  
Sbjct: 179 GIAVGMATNIPPHNIAELIDACLHLIKSPDARDETLLTYIPGPDFPTGGVIVEPPESIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++E+IAEL++ +++  +AD+
Sbjct: 239 AYLTGRGAFRLRCKWALEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E + +    +V++  +YR + L+  FS+NM   ++G  P+  +L  +
Sbjct: 299 RDESA-DDVRLVLEPRSKNVDPEVLMGMMYRNSELELRFSLNMNVLIDGVTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+ FR+EV++RR+ + + K   R  VL GL +A  NLD V+ IIR+  +P   +  L
Sbjct: 358 LRAFLDFRQEVLLRRSAHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDDDP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+  W  +  + + +       +        L++VQ  AIL +RL  L  L   ++R E 
Sbjct: 415 MREDWGRTVPRAMSE---ADYVSPPPTDEPGLTDVQAEAILNMRLRSLRRLEEMELRAER 471

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDE 530
           ++L  E     D+L   S     +  +L  V+           RRT+  E   + ++  E
Sbjct: 472 DALMQERAGLEDLLEDVSLQWAAVADQLKEVQKTFGKTHPIGARRTKFAEAGSVEEVPLE 531

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA          +  +D D    +F   T   +L
Sbjct: 532 AMIDREPITVVCSQMGWI--------RAMTGHLDLSRELKFKDGDAPRFMFHAETTDRIL 583

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F S G  Y      LP G  +  G+ L  ++ L             +         ++ 
Sbjct: 584 VFGSNGRFYTISASNLPGG--RGMGEPLRLMVDLPNEA------AIVDLLIHKPGRKLLV 635

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + I   RSGK  + L            T  + +       + + F +
Sbjct: 636 ASTAGDGFIVPEDEVIAQTRSGKQVLNLKDPARASVCRPVTG-DHVACVGDNRKVLVFSL 694

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +    GR   GVR      G
Sbjct: 695 DELPEL-GRG-KGVRLQKYKDG 714


>gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
 gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I]
          Length = 782

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 258/741 (34%), Positives = 394/741 (53%), Gaps = 41/741 (5%)

Query: 1   MTEHIISSD---EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+ +   D     E+  I    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL
Sbjct: 1   MTDLVEDPDMPSAPEQGEILE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIL 59

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNF
Sbjct: 60  YAMNRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNF 119

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           G++DGD PAA RYTE R+   A  +LD L ++ VDFR NYDG   EP VL A +PN+L N
Sbjct: 120 GNIDGDNPAASRYTEARMTFVAEAMLDGLNENAVDFRDNYDGRLTEPAVLPATFPNILAN 179

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG- 236
           G  GIAVGMATNIP HN+ E++D C+ +I  PD   D L+  + GPDFPTG +I+     
Sbjct: 180 GAAGIAVGMATNIPPHNIAELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKEN 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I  AY+TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +
Sbjct: 240 IAKAYSTGRGSFRLRCKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPIL 299

Query: 297 ADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTL 354
           AD+RDES     R+V+E K +    +V++N ++R + L+  FS+NM   ++G  P+  ++
Sbjct: 300 ADVRDESA-DDIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSM 358

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P   +
Sbjct: 359 KEVLRAFLDHRRDVLQRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDP---K 415

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L++  W+    + L +    + Y   + G   L+EVQ  AIL +RL  L  L   ++ 
Sbjct: 416 AALIREDWSKDHPRALTE----ADYITPARGVGELTEVQAEAILNMRLRSLRKLEEIELT 471

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED 529
            E ++L  E    +++L+S       I ++L   K +         RRT   E     + 
Sbjct: 472 RERDALREERAGLVELLASEELQWSRISEQLKETKKQFGKDYEGGARRTLFAEAGEAEDV 531

Query: 530 --EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E  I RE + V  S +G++        RA          +  +D D    +F   T  
Sbjct: 532 PLEAMIDREPITVVCSQMGWI--------RAMTGHIDLSRELKFKDGDAPRFIFHAETTD 583

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F S G  Y      LP G  +  G+ L  ++ L             +         
Sbjct: 584 KLLVFGSNGRFYTLSAANLPGG--RGMGEPLRLMVDLPNEAE------IVDLLIHNPEGR 635

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ A+  GN       + +   RSGK  + +   DE   V    + + + + ++ G+ + 
Sbjct: 636 LLVASDAGNGFICAEKEIVAQTRSGKQVLNVK-DDERAKVCIPVEGDHVAVVSENGKFLV 694

Query: 708 FPISAIRVFAGRNSVGVRGIS 728
           F +  +         GVR   
Sbjct: 695 FAVEEMPELT--RGKGVRLQK 713



 Score = 44.4 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 73/228 (32%), Gaps = 21/228 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    D+    R    A   ++ D  L      +   ++  +++G         IR   
Sbjct: 506 KKQFGKDYEGGARRTLFAEAGEAEDVPLEAMIDREPITVVC-SQMGW--------IRAMT 556

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R +    GD   +   + HA+      +             +           
Sbjct: 557 GHIDLS-RELKFKDGD---APRFIFHAETTDKLLVFGSNGRFYTLSAANLPGGRGMGEPL 612

Query: 778 DSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              V+     E    L    E  +L  S+ G G   +  +     RSGK +      +  
Sbjct: 613 RLMVDLPNEAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDERA 672

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           ++       PV + D + +VS+ G  +   V E+   +R  KGV +  
Sbjct: 673 KV-----CIPV-EGDHVAVVSENGKFLVFAVEEMPELTR-GKGVRLQK 713


>gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
 gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516]
          Length = 808

 Score =  581 bits (1498), Expect = e-163,   Method: Composition-based stats.
 Identities = 257/775 (33%), Positives = 396/775 (51%), Gaps = 66/775 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     +      I    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSD-TPDPENVSPDLIEP--LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+ AIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 58  RELRLSSAGGFRKSAKISGDVMGNYHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LLD L +D VDFR NYDG+  EPVVL A +PN+L NG  
Sbjct: 118 DGDNPAASRYTEARMTAAAEALLDGLNEDAVDFRANYDGTLTEPVVLPAAFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMATNIP HN+ E+V  C+ +I  PD   + L+  I GPDFPTG V +  R  I  
Sbjct: 178 GIAVGMATNIPPHNIDELVQACLHLIKTPDARDETLLNYIPGPDFPTGGVLVEPRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRG+  +R   H E     + QI+VTEIP+QV K+ ++EK+AE+++ K++  + D+
Sbjct: 238 TYRTGRGAFRLRCRWHTEDLGRGQWQIIVTEIPFQVQKSKLIEKLAEVIQTKKVPILGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E + +    DV++  LYR + L++ FS+NM   ++G  P+  +L  +
Sbjct: 298 RDESAE-DIRIVLEPRSKNVDPDVLMGMLYRSSDLETRFSLNMNVLIDGLTPKVCSLKEV 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA---- 413
           L+AF+  R EV++RR+++ + K   R  VL GL +A  +LD V+ IIR+  +P+ A    
Sbjct: 357 LRAFLDHRREVLLRRSRHRMAKIDHRLEVLEGLIVAFLHLDRVIDIIRYDDDPKAALMYE 416

Query: 414 -----RRELMQRSWNASDIKDLIDLIDDSSYTIGSD------------------------ 444
                 +  + R+ + +D    +  +D +   + +D                        
Sbjct: 417 DWGRPHQSTIARATSEADYVSPLAGVDRAGLVLVADPAAGVPAVLGDEPVQAGVPRRYAG 476

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+VQ  AIL +RL  L  L   ++  E + L  E  E  D+L + S     I ++
Sbjct: 477 REQGLSDVQAEAILNMRLRSLRRLEELELVAERDRLMAERAELEDLLETGSLQWAKIAEQ 536

Query: 505 LLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L  V+ +         RRT   E     E   E  I RE + +  S +G++        R
Sbjct: 537 LREVRAQFGAKAPGGARRTTFAEAGEVEEVPLEAMIEREPVTIVCSQMGWI--------R 588

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           A          +  +D D    +F   T   +L F S G  Y      LP G  +  G+ 
Sbjct: 589 ALTGHIDLNRELKFKDGDGPRFIFHAETTDRLLLFGSNGRFYTLSAANLPGG--RGMGEP 646

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +  ++ L    R        +         ++ A+  G+       + +   R+GK  + 
Sbjct: 647 VRLMVDLPNEAR------IVDLFIHRPGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLN 700

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + +  +       +  + + +  +  + + FP+  +    GR   GVR      G
Sbjct: 701 VRAPAQARICHPVSG-DHLAVVGENRKVLVFPLDQLPEM-GRG-KGVRLQKYKDG 752


>gi|72383169|ref|YP_292524.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
 gi|72003019|gb|AAZ58821.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str.
           NATL2A]
          Length = 827

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 262/880 (29%), Positives = 435/880 (49%), Gaps = 110/880 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  +S+  EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + Y 
Sbjct: 3   KERLKPISLHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPERPYR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R  Q ++ R  +++G GNFGS+D DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYDALVRQVQVFNSRYPILDGHGNFGSIDDDPPAAMRYTE 122

Query: 133 CRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   +   +L ++ ++TVDF PN+DGS QEP VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 123 TRLAPISNDAILSEIDQETVDFSPNFDGSQQEPDVLPAQLPFLILNGSTGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EVV+  +A+I  P ++ + L+EII GPDFPTG  IL   GIK  Y  GRGSI +R
Sbjct: 183 PHNLNEVVEALIAIIKKPSLNEEKLLEIIPGPDFPTGGEILVSNGIKETYTKGRGSITMR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++ IE+ +       R  I+++E+PYQ+NKA+ +EK+A+LV   +I  IAD+RDESDR 
Sbjct: 243 GIARIEEINPGKGKHKRSGIIISELPYQLNKASWIEKLADLVNNGKISGIADIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+++E+KR +    IL+ LY+ TSLQS F   ++AL   +P + TL  +L  F+ FRE
Sbjct: 303 GMRILVEVKRDSDPKKILDFLYQKTSLQSNFGAILLALVNGQPVQLTLKKLLNNFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++ R+ YLL   ++R  ++  L  A  N+ +V+ +I  S +   A+  L+        
Sbjct: 363 NTILLRSNYLLKNIKNREEIVDALIQATNNVKKVIDLIEKSKDTPEAKSNLI-------- 414

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                              ++ ++E Q   IL + L ++TGL +D ++NEL  L  +  E
Sbjct: 415 ------------------ISLKINERQADGILGMPLKKITGLEKDSLKNELKDLKTKRAE 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT----- 541
              I++ +  L+ ++ +EL  +K    + RRT+++EG   +  E    +           
Sbjct: 457 LELIINDKENLMKVMVKELKDLKKRFGSKRRTKLIEGGDALIAEKMANQRPNKELQRINA 516

Query: 542 ---VSHLGYVKRVPLSVYRAQR----RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
              +S    +     +  +       +  K +     R +     L     +   +   S
Sbjct: 517 LKELSKDSEIIIQSNNEIKIIPSLTIKKLKLKEINQERKDILPAKLIWPIKNEPKILAVS 576

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLN-QGERITTIMPFPEDESSWNNLYVVFATK 653
                    W         +   L   L    + ++I  ++P  E      ++ +   + 
Sbjct: 577 QEGKIGLLKWEFA----GQKPGPLKQFLPAGLENDKIINLIPLTE----IRDISIGLIST 628

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +R  +++   I+      +KL    ++ S   C + + + + + +G+ ++  I+  
Sbjct: 629 DGKFKRISINEISDISNRSTTILKLKDSVKLKSCILCKENSYLYIVSDIGRIIKIKITEN 688

Query: 714 R-VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
              F G+ + G   I L   + ++                                    
Sbjct: 689 DFPFMGKLAQGTNIIKLFPNENIV------------------------------------ 712

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                          E     + K + ++ ++ KGF  + S+ +  IS +   G      
Sbjct: 713 ---------------EALSFQEKKNKDLILITNKGFFVKHSTKEITISKKGALGTMGIHF 757

Query: 833 SKINEI--GALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
              N+     ++  F   +N  + + +DK    R+  ++I
Sbjct: 758 KD-NKTIKERVIDCFI--NNKHVYVKTDKDRYQRLKTDQI 794



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 68/181 (37%), Gaps = 9/181 (4%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I+  + D + +  I    +      +     +   +   +G           + +E +  
Sbjct: 550 INQERKDILPAKLIWPIKNEPKILAVSQEGKIGLLKWEFAGQKPGPLKQFLPAGLENDKI 609

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVF 845
                  ++++  I  +S  G  KR S  +   ISNR      +T + K+ +   L +  
Sbjct: 610 INLIPLTEIRDISIGLISTDGKFKRISINEISDISNR------STTILKLKDSVKLKSCI 663

Query: 846 PVNDNDQIILVSDKGTLIRVPV--NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              +N  + +VSD G +I++ +  N+     +  +G  I     +E +V     +E +  
Sbjct: 664 LCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNENIVEALSFQEKKNK 723

Query: 904 D 904
           D
Sbjct: 724 D 724



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 14/170 (8%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           + D++I++  +       D  I  +      +R+   +  +I++         +  + + 
Sbjct: 605 ENDKIINLIPLTEI---RDISIGLISTDGKFKRISINEISDISNRSTTILKLKDSVKLKS 661

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             L  +  ++  VS+ G   +    +  F    +  +G     +        +V      
Sbjct: 662 CILCKENSYLYIVSDIGRIIKIKITENDFPFMGKLAQGTNIIKLFPNE---NIVEALSFQ 718

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD----ERVV 892
           +  N  +IL+++KG  ++    EI I+ +   G +      +    ERV+
Sbjct: 719 EKKNKDLILITNKGFFVKHSTKEITISKKGALGTMGIHFKDNKTIKERVI 768


>gi|291459210|ref|ZP_06598600.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418464|gb|EFE92183.1| DNA gyrase subunit A [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 747

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 249/762 (32%), Positives = 410/762 (53%), Gaps = 30/762 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SYL Y+++VI  RA+PD+RDGLKPV RR+L+ M ++ V  ++  +K
Sbjct: 3   EKILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLYDMNELHVHSDRPTLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+A+IY+ L  +AQD+     L++GQGNFGS++GD  AA RYTE 
Sbjct: 63  SARICGDTMGKYHPHGDASIYETLVVLAQDFKRMQPLVQGQGNFGSIEGDSAAAPRYTEA 122

Query: 134 RLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RLQ+     +L DL   TV F+PNYD   +EP VL AR P  L+NG  GIAVGM T+ P+
Sbjct: 123 RLQRFTDEVMLRDLE-TTVPFQPNYDEKLREPEVLPARIPYFLLNGSEGIAVGMTTSAPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL E++D  +A + NP ++   ++  + GPDFPTG +I  R+ + + Y TG G + +RG
Sbjct: 182 HNLSEIIDLVLAYLKNPAMETREMLHYLPGPDFPTGGIIANRSELLDIYRTGSGKLKLRG 241

Query: 253 VSHIEKTS--GDREQIVVTEIPYQVNKA---AMLEKIAELVREKRIVDIADLRDESDRQG 307
               EK     D+++++VTEIPY +        ++  A LV EK++ +I D+ ++SD+ G
Sbjct: 242 KLVFEKRKGRSDKDKLIVTEIPYTMIGQGIMKFMQDTAALVEEKKLPEITDISNQSDKDG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK GA  D I N LY+ T L+  F VNM+A+   +PE  +L GIL+ +++F+ +
Sbjct: 302 IRIVLELKSGADIDRITNILYKKTKLEDSFGVNMLAIVKGRPEVLSLRGILREYLSFQYQ 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ ++ + LL K   R  +  GL  AV  +D ++ ++R S   E A++ LM       + 
Sbjct: 362 LIEQKYQKLLEKELLRKEIQEGLIRAVDCIDAIIALLRSSQKQEEAKKALM------GEG 415

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
            + I L +            + +E Q +AIL+++L++L GL    ++ E       IKE 
Sbjct: 416 SEGIRLRERDREYREQIRDFHFTERQAQAILDMKLSKLIGLELLALQREYRESLKSIKEY 475

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             ILSSR R   ++ QEL  +++    PRRT + +G   + DE  +    +V      GY
Sbjct: 476 RGILSSRERANELLAQELSEIRERYFVPRRTLLEDGKDAVYDESAVEEMQVVYVQDRFGY 535

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK +  +VY+  +                   L        +L F+  G +++ ++  +P
Sbjct: 536 VKLLDETVYQRNQEA----------LLSESRFLIPCKNTDRILLFTDQGRLHQIRLLDVP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           +G  + +G  + N   +++       + F   ++  +   ++F ++ G  +R    +F  
Sbjct: 586 LGKFRDKGVPIDN---ISKYSASEEEILFAAAKAELSGKELLFVSQMGLAKRVPSEEFDT 642

Query: 668 INRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N     A KL   D + SV +     E D++L ++    +RFPI  +     +N+ GV 
Sbjct: 643 AN-RLVSATKLQEGDRVASVLSVPGESEEDLVLQSEASYFLRFPIKEL-PLQKKNAKGVL 700

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            + L +GD++ S  ++             +     ++    G
Sbjct: 701 SMKLGRGDRIRSALLIAPGSERLSTEKGELMLSRLKQSHRGG 742



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 4/143 (2%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D        +  S           + +L  + +L VS+ G  KR  S +F  +NR    +
Sbjct: 591 DKGVPIDNISKYSASEEEILFAAAKAELSGKELLFVSQMGLAKRVPSEEFDTANRL---V 647

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            AT + + + + ++++V P    + ++L S+    +R P+ E+ +  +  KGV+     +
Sbjct: 648 SATKLQEGDRVASVLSV-PGESEEDLVLQSEASYFLRFPIKELPLQKKNAKGVLSMKLGR 706

Query: 888 DERVVSVERIRESEIVDEAESTE 910
            +R+ S   I         E  E
Sbjct: 707 GDRIRSALLIAPGSERLSTEKGE 729


>gi|315655460|ref|ZP_07908360.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
 gi|315490400|gb|EFU80025.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           ATCC 51333]
          Length = 845

 Score =  581 bits (1497), Expect = e-163,   Method: Composition-based stats.
 Identities = 282/875 (32%), Positives = 409/875 (46%), Gaps = 116/875 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +       + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M
Sbjct: 1   MSDSSL-------ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+
Sbjct: 54  KQMGLTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  
Sbjct: 114 D-DGPAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGAN 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ A
Sbjct: 173 GIAVGMATNIPPHNVGETINAAIYLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +
Sbjct: 233 YETGRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQ 292

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+
Sbjct: 293 DLSDRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQ 352

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM 
Sbjct: 353 VFVDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT 412

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILELRL RLT   R ++  E + 
Sbjct: 413 --------------------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADE 446

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+S  +L  +++ ++      L TPRRT ++E               ++
Sbjct: 447 LRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVL 506

Query: 540 VTVSH--------LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            T++             + V  +  RA R    G    +      +    +  T      
Sbjct: 507 GTMTVSDVPLEVPDAPCRIVLGADGRAIRLANTGPVNRLEGFNSTIAGSILTHTRGCFGV 566

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL----------------------------- 622
            +S GFV +  V  LP G   +   +                                  
Sbjct: 567 VTSSGFVVRLDVLSLPPGEKSSLADSAAGASSAAAAGSTETADIELNLSESAPPWSFDGA 626

Query: 623 -SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
             L+   R           +   +  V   T HG V+R +        +     + LD  
Sbjct: 627 PQLSAAARFEDGETVVGILTLDEDETVGMMTAHGIVKRMRPDYPST--QDRFSIINLDGT 684

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV
Sbjct: 685 DQLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIV 743

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                           M+A                                         
Sbjct: 744 PDDLVAATTVATVAAIMNAMPGANQSSI-------------------------------- 771

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                   K T    + +  R  +G+R     K  
Sbjct: 772 --------KLTPLDRYPVKGRGAQGVRVQRFLKGE 798



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
            +++ +  ++  G  KR    D+    +R         +  ++    L+      D+ QI
Sbjct: 648 DEDETVGMMTAHGIVKRMRP-DYPSTQDR-------FSIINLDGTDQLIYAGACPDDAQI 699

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +++S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 700 VMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDD 746



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 57/188 (30%), Gaps = 27/188 (14%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNI 785
               G+ V+ +  +   +         +          + D   I +L     +   G  
Sbjct: 634 RFEDGETVVGILTLDEDETVGMMTAHGIVKRMRPDYPSTQDRFSIINLDGTDQLIYAGAC 693

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            ++    +   +  +L         RT +   R   R+  G+    + +      ++A  
Sbjct: 694 PDDAQIVMISTDAQLL---------RTPANKVRPQGRNAGGVAGMSLKE---HTQVIAGA 741

Query: 846 PVNDN----------DQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            V D+            I+      ++ ++   P++   +  R  +GV +    K E  +
Sbjct: 742 IVPDDLVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYAL 801

Query: 893 SVERIRES 900
            +  +   
Sbjct: 802 DMAFVGPD 809


>gi|238063682|ref|ZP_04608391.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
 gi|237885493|gb|EEP74321.1| DNA gyrase subunit A gyrA [Micromonospora sp. ATCC 39149]
          Length = 829

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 278/853 (32%), Positives = 403/853 (47%), Gaps = 105/853 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++
Sbjct: 17  DQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYSMHEAGHRPDR 76

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK AR+ G+VMG+YHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA R
Sbjct: 77  AHVKSARVVGDVMGRYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAAAR 135

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+   A  L+ +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN
Sbjct: 136 YTEARMSHEAMLLVGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVGMATN 195

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +  HNL EVV     +I++PD DLD LME + GPD PTG V+LG   ++ AY TGRG + 
Sbjct: 196 MIPHNLAEVVSAARWLINHPDADLDKLMEFVPGPDLPTGGVLLGLDEVRRAYETGRGVVR 255

Query: 250 IRGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDR- 305
           +RG       + S  R+ I V E+PY V    ++  +   V + KR+  IAD++D +DR 
Sbjct: 256 MRGRVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAVTNEVNKTKRLTGIADVKDLTDRE 315

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIE K G +   +L  LYR T L+  F VN + L   +P+   L  +L+ F+  R
Sbjct: 316 NGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPQTLGLKALLEVFLRHR 375

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +VV RR+ Y   K ++R H++ GL IA+ ++D+VVR+IR S + + A+  LM++     
Sbjct: 376 YDVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVRLIRSSDDAQAAKDGLMRQ----- 430

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS++Q   IL+  L RLT   R ++  E   L  EI 
Sbjct: 431 ---------------------FKLSDIQASYILDTPLRRLTKFDRIELEAEQEQLRKEIA 469

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDM 538
           +   IL     L  ++  EL +V  +  T RRT +V+G L                 +  
Sbjct: 470 QLSTILDDEKVLRKVVSDELAAVVKKFGTERRTTLVDGDLKEVLAASAPAGPLEVADDPC 529

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G V R             +GR        D V  L   +    VL  +S G  
Sbjct: 530 QVILSATGLVARTAAE----SEEAAEGRRRSGRVKHDAVRALVHSTARGRVLLVTSAGRA 585

Query: 599 YKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +K  V  LP+   Q        G +   ++ L  GE +  + P     ++  +  +   T
Sbjct: 586 FKIDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLG--PTAEGSPGLALGT 643

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
           + G V+       +         + L   DE++           +   +     +RFP S
Sbjct: 644 RQGVVKVCAPDWPV--RSDEFEVVGLREGDEVVGATWLADGSETLAFVSSEASLLRFPAS 701

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +R   G    G+ GI+L  G +V+    V   D  + E                     
Sbjct: 702 LVRP-QGPKGGGMAGINLPAGARVVFFGAVREDDPSHGEP-------------------- 740

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNRSGKGIRAT 830
                                        + V+  G   K T    +    R+  G+RA 
Sbjct: 741 -----------------------------MVVTSTGATVKVTPFEAYPAKGRATGGVRAQ 771

Query: 831 DVSKINEIGALVA 843
              K  E   +VA
Sbjct: 772 RFLKG-ETDLVVA 783



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 84/271 (30%), Gaps = 28/271 (10%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           ++   V  +  G V R            R           D + ++   T    +LL T 
Sbjct: 526 DDPCQVILSATGLVARTAAESEEAAEGRRRSGRV----KHDAVRALVHSTARGRVLLVTS 581

Query: 702 LGQCVRF---PISAIRVFAGRNS-VGVRGIS------LAKGDQVISMAIVLHADADYDER 751
            G+  +    P+  +   AG  S  G  G+S      L  G+ V+ +A +          
Sbjct: 582 AGRAFKIDVLPLPVLPEQAGTVSLRG--GMSAAELVPLEPGESVVGLAPLGPTAEGSP-- 637

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +       ++ + D    +       +           L    + +  VS +    R
Sbjct: 638 GLALGTRQGVVKVCAPDWPVRSDEFEVVGLREGDEVVGATWLADGSETLAFVSSEASLLR 697

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIR-VP 866
             +   R     G G+   ++        +V    V ++D    + ++V+  G  ++  P
Sbjct: 698 FPASLVRPQGPKGGGMAGINLPAG---ARVVFFGAVREDDPSHGEPMVVTSTGATVKVTP 754

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                   RAT GV      K E  + V  I
Sbjct: 755 FEAYPAKGRATGGVRAQRFLKGETDLVVAWI 785


>gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5]
 gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5]
          Length = 737

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 245/760 (32%), Positives = 386/760 (50%), Gaps = 62/760 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ + LR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+      L++D+ KDTVDFRP YD +  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +ID+P  +++ +M  I+GPDFPTG +I+ +   I  AY TGRGS+ +
Sbjct: 182 PHNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  ++++RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   RG    +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR+ YLLNK + R  +L GL IA  NLDE+++IIR    P   +  +M+R        
Sbjct: 361 VTRRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEP---KAIMMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AI   RL  L  L   +I NE ++L  +     
Sbjct: 410 ------------------FKLTEIQVEAIFNTRLRSLRKLEEQEIINEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
           +IL++   L  ++K+E+ +V+ +         RRT   E       ++    I +E + +
Sbjct: 452 EILNNPKELWKVVKKEIRTVQTKFGLNTVIGARRTSFEEVTLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDAEKFILEAYTTDKILIVSSEGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G        L+  +  N                   +  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGESIKLLVDIGNND---------ITNILVYKPDQLLLLASSVGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ +   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 615 NSNEVMAQTKTGKQIMNVPDGHVCIACLPVNG-DSIACIGESRKLLVFNIDEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             GV      K  +++ + I    D         +K    
Sbjct: 672 GQGVTLQKF-KNAKLLDIKIFNKEDGLGWNNNGKVKLEKN 710


>gi|166368730|ref|YP_001661003.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
 gi|166091103|dbj|BAG05811.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843]
          Length = 914

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 270/916 (29%), Positives = 427/916 (46%), Gaps = 49/916 (5%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   ++  EM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ + KC
Sbjct: 12  QIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPFRKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++Y+AL RM QD+S R  L+ G GNFGS+D DPPAA RYTE R
Sbjct: 72  ARVVGDVLGKYHPHGDQSVYEALVRMVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETR 131

Query: 135 LQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           L       +L  + +  V+F  N+D S QEPVVL A+ P +++NG  GIAVGMATNIP H
Sbjct: 132 LAGIGDQAVLGGISEAIVNFSSNFDNSQQEPVVLPAQLPILILNGCSGIAVGMATNIPPH 191

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGEVV+G +A+IDNPD+  + L+EII GPDFPTG  IL  TGI+ AY TGRG I +RGV
Sbjct: 192 NLGEVVEGLIALIDNPDLSEEKLVEIIPGPDFPTGGEILDDTGIREAYRTGRGIIPVRGV 251

Query: 254 SHIE------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +  E      K   +R  IVVTE+P+QVNKAA +EKIAELV   ++  IAD+RDES+R+G
Sbjct: 252 AKTETIIIEGKRRRERTAIVVTELPFQVNKAAWIEKIAELVNLGKLEGIADIRDESNREG 311

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR +    +L  LY+ T+LQ+ F   ++AL   +P + +L  +L+ F+ FRE 
Sbjct: 312 IRVVIELKRESQPQQVLAALYQQTALQTNFGAIILALVDNQPRQLSLKQVLQEFLRFRET 371

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+    L +A DR H++ GL +A+ N+D VV I++ +P+  TA+             
Sbjct: 372 TLTRQYGDELQQASDRLHLVEGLLLALQNIDRVVDILKNAPDGTTAKYRFQAE------- 424

Query: 428 KDLIDLIDDSSYTIGSDGTMYLS--EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
              + + D  + +I +     L+  E Q        L          + N    L    K
Sbjct: 425 ---LGISDAQADSILAMPLRRLTGLERQKLETEATELQAKIQQLETLLHNRQEFLKSLKK 481

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDT-PRR--TRIVEGLLDMEDEDCIVREDMVVTV 542
           E   +    +           S   + +T  RR  T         + +D  V++   V +
Sbjct: 482 ELRSLKKKFADSRRTKIPTGKSGNRKQETGDRRQETGDRRQETAGKKQDSAVKKQETVPM 541

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
                 +   +S+           +          T      T +            K+K
Sbjct: 542 KKFSPPETKEVSLPTPHTPHPTPHTPHPTPHTPHPTPHTPHPTPSFKAEVKKQENKVKKK 601

Query: 603 VWRLPI---GSPQARGKALINILSLNQGERITTI-----------MPFPEDESSWNNLYV 648
                         +      IL L+  ++I+             + + +      N  V
Sbjct: 602 PESENPPSLSLFTPQEPPENAILLLDAEDKISWTTEEERAPDRGLIIYQQAIEKRENFLV 661

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-------QENDILLTTK 701
           +           +             ++   +  +               +  ++LL ++
Sbjct: 662 ILDNAKAYPIATREVPPKDNQPVLISSLLTKTAQKDSEAVLNQFFLTEPQKNQELLLLSQ 721

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+  R PI  +    G  S G+  + L + D++                          
Sbjct: 722 QGRIKRLPIDELE---GVGSRGLSLMKLKEDDRLYGAIFTHEGLDLAIATSSGRVLRYPV 778

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           R  +     +         +        C  L  +E  +L +S  G+GKR +  + R+S 
Sbjct: 779 REELLPMMSKSAQGLAILRLRYGEHLAGCVSLPHRENLLL-ISGLGYGKRLAIENLRLSQ 837

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
               G  A     +N+  +L A+    +   ++L +++   + + V  + +  +   G  
Sbjct: 838 LGDLGSPALQF--VNKQDSLAAMVAAREGSIVLLSTNQNRKLPLEVETVTVTGKDGTGSQ 895

Query: 882 IFSTAKDERVVSVERI 897
           +      E+++  + +
Sbjct: 896 LVKLNPAEKIIKAQLL 911



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%)

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           + +   +       +            K        +  +       K Q +L +S++G 
Sbjct: 665 NAKAYPIATREVPPKDNQPVLISSLLTKTAQKDSEAVLNQFFLTEPQKNQELLLLSQQGR 724

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            KR    +  +     +G+    + +      L      ++   + + +  G ++R PV 
Sbjct: 725 IKRLPIDE--LEGVGSRGLSLMKLKE---DDRLYGAIFTHEGLDLAIATSSGRVLRYPVR 779

Query: 869 E--IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           E  + + S++ +G+ I      E +     +   E 
Sbjct: 780 EELLPMMSKSAQGLAILRLRYGEHLAGCVSLPHREN 815


>gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
 gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238]
          Length = 803

 Score =  580 bits (1496), Expect = e-163,   Method: Composition-based stats.
 Identities = 254/743 (34%), Positives = 393/743 (52%), Gaps = 39/743 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +       +     ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 35  MNDDALDPKMNPTE-----TLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 89

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 90  RELKLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 149

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L ++ VDFR NYDG+ +EPVVL A +PN+L NG  
Sbjct: 150 DGDNPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSS 209

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E++  C+ +I +P+   + L++ I GPDFPTG VI+     I  
Sbjct: 210 GIAVGMATNIPPHNLEELIGACLHLIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIAE 269

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R    +E     + Q+++TEIPYQV K+ ++EK+AE++  K++  +AD+
Sbjct: 270 AYRTGKGGFRLRCKYEVEDLGRGQWQVIITEIPYQVQKSRLIEKLAEIIELKKVPILADV 329

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E K +    +V++  LYR + L++ FS+NM   ++G  P+  +L  +
Sbjct: 330 RDESAE-DIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEV 388

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V++RR+ + + K   R  VL G  IA  NLD V+ IIR+  +P+ A   L
Sbjct: 389 LRAFLDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKA---L 445

Query: 418 MQRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           M   W  +  + + +         + S+  M L++VQ  AIL +RL  L  L   ++  E
Sbjct: 446 MAEDWGKTHARAMDEADYVSPLTGLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKE 505

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-- 529
            ++L +E     D+L S       I  +L   +    +      RRT      +  +   
Sbjct: 506 RDALMLERAGLEDLLDSEDLQWKTIADQLRETRKLFGSNSEGGARRTAFAVAGVVEDVPL 565

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I +E + V  S +G++        RA          +  +D D    +F   T   +
Sbjct: 566 EAMIDKEPVTVVCSKMGWI--------RALTGHIDLARELKFKDGDEGRFVFHAQTTDRL 617

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F S G  Y      LP G  +  G+ L  ++ L     I  +              ++
Sbjct: 618 LVFGSNGRFYTMGTSTLPGG--RGMGEPLRLMVDLPNEAEIVALF------IHRAGNKLL 669

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G+       D I   R+GK  + +   D    V +    + +    +  + + FP
Sbjct: 670 VASSAGDGFVVPEDDVIAQTRAGKQVLNVK-GDVRARVCSTVTGDYVACVGENRKVLLFP 728

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +    GR   GVR      G
Sbjct: 729 LDELPEM-GRG-KGVRLQKYKDG 749



 Score = 45.2 bits (105), Expect = 0.047,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 53/215 (24%), Gaps = 33/215 (15%)

Query: 681 RDEILSVETCTQENDILLTTKLGQ--CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
            D  L      +   ++  +K+G    +   I   R                 GD+    
Sbjct: 561 EDVPLEAMIDKEPVTVVC-SKMGWIRALTGHIDLAREL-----------KFKDGDE--GR 606

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +      D                        +           N +E     +     
Sbjct: 607 FVFHAQTTDRLLVFGSNGRFYTMGTSTLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGN 666

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-----IGALVAVFPVNDNDQI 853
            +L  S  G G      D     R+GK +                G  VA   V +N ++
Sbjct: 667 KLLVASSAGDGFVVPEDDVIAQTRAGKQVLNVKGDVRARVCSTVTGDYVAC--VGENRKV 724

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +L          P++E+    R  KGV +      
Sbjct: 725 LL---------FPLDELPEMGR-GKGVRLQKYKDG 749


>gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
 gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307]
          Length = 804

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 257/743 (34%), Positives = 393/743 (52%), Gaps = 39/743 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++          +     ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 36  MSDDAPDPKMNPTE-----TLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 90

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 91  RELKLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 150

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L ++ VDFR NYDG+ +EPVVL A +PN+L NG  
Sbjct: 151 DGDNPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSS 210

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HNL E++  C+ +I  PD   + LM  I GPDFPTG VI+     I  
Sbjct: 211 GIAVGMATNIPPHNLEELIGACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAE 270

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G   +R    +E     + Q++VTEIPYQV K+ ++EK+AE++  K++  +AD+
Sbjct: 271 AYRTGKGGFRLRCKYEVEDLGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADV 330

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E K +    +V++  LYR + L++ FS+NM   ++G  P+  +L  +
Sbjct: 331 RDESAE-DIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEV 389

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R +V++RR+ + + K   R  VL G  IA  NLD V+ IIR+  +P+ A   L
Sbjct: 390 LRAFLDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKA---L 446

Query: 418 MQRSWNASDIKDLIDLID-DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           M   W  + ++ + +         +  +  M L++VQ  AIL +RL  L  L   ++  E
Sbjct: 447 MAEDWGKTHVRAMDEADYVSPLTALVGEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKE 506

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-- 529
            ++L +E     D+L S       I ++L   +    +      RRT   E  +  +   
Sbjct: 507 RDALMLERAGLEDLLDSDDLQWKTIAEQLRETRKLFGSNSKGGARRTAFAEAGVIEDVPL 566

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I +E + V  S +G++        RA          +  +D D    +F   T   +
Sbjct: 567 EAMIDKEPVTVVCSKMGWI--------RAMTGHIDLARELKFKDGDEGRFVFHAQTTDRL 618

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F S G  Y      LP G  +  G+ L  ++ L     I  +              ++
Sbjct: 619 LVFGSNGRFYTLGASTLPGG--RGMGEPLRLMVDLPNEAEIVALF------IHRAGNRLM 670

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G+       D I   R+GK A+ +   D    V +    + +    +  + + FP
Sbjct: 671 IVSSAGDGFIVPEDDVIAQTRAGKQALNVK-GDVRAKVCSTVIGDHVACVGENRKVLLFP 729

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +    GR   GVR      G
Sbjct: 730 LDELPEM-GRG-KGVRLQKYKDG 750



 Score = 45.2 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 19/208 (9%)

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D  L      +   ++  +K+G         IR   G   +  R +    GD+     +
Sbjct: 562 EDVPLEAMIDKEPVTVVC-SKMGW--------IRAMTGHIDLA-RELKFKDGDE--GRFV 609

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                 D                        +           N +E     +      +
Sbjct: 610 FHAQTTDRLLVFGSNGRFYTLGASTLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGNRL 669

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + VS  G G      D     R+GK  +A +V K +    + +       D +  V +  
Sbjct: 670 MIVSSAGDGFIVPEDDVIAQTRAGK--QALNV-KGDVRAKVCSTVI---GDHVACVGENR 723

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKD 888
            ++  P++E+    R  KGV +      
Sbjct: 724 KVLLFPLDELPEMGR-GKGVRLQKYKDG 750


>gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46]
 gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46]
          Length = 748

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 253/742 (34%), Positives = 373/742 (50%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      +    GI +V +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MGKPFEPPSD--RDGIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  L++GQGNFG++
Sbjct: 59  RMLRLDPGTAHKKCARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA+RYTECR+ + A  LLD + +D VDFRPNYDG  +EPVVL A +PN+L NG  
Sbjct: 119 DGDNPAAQRYTECRMTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQ 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I +P      L   ++GPDFPTG V++     I  
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E       Q+VVTEIPY V KA ++EK+AEL+ EK++  +AD+
Sbjct: 239 AYRTGRGAFRVRARWTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E + R     V++  L+R T L+S FS+NM  L   + P    L  +
Sbjct: 299 RDESAE-DVRIVLEPRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R  V+ RR+++ L +   R  +L GL I   +LD+V+RIIR    P+      
Sbjct: 358 LREWLDHRRTVLQRRSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEPKA----- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ  AIL+ RL  L  L   +++ E 
Sbjct: 413 ------------------------ELMRHFQLTEVQANAILDTRLRSLRKLEEMELKREQ 448

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---D 529
            +L  E  +   +L S       I  ++ +VK           RRT +       +    
Sbjct: 449 AALTAEKADLDALLDSEPLQWKSIAGQVRAVKKTFGPETALGRRRTTLENPPDTSDLDLA 508

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G++        RA +      S V  + +D +   F   T   +
Sbjct: 509 EAMIEREPITVIVSQKGWI--------RALKGHVADLSTVQFKGDDALKLSFPTETTAKL 560

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G V+     +LP G     G  +  +  L++G  I T+ PF           ++
Sbjct: 561 LVLATNGKVFTLDAAKLPGGRGF--GDPIRLMADLDEGSDIVTVFPFRA------GAKLL 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           F T  G          +   R GK  + LD    +         + + +  +    V FP
Sbjct: 613 FGTSDGRGFTTLADGLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGENRLLVVFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           ++ I   A     GVR     +
Sbjct: 673 LTEIPDMA--RGKGVRLQRYRE 692


>gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
 gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b]
          Length = 750

 Score =  580 bits (1495), Expect = e-163,   Method: Composition-based stats.
 Identities = 243/743 (32%), Positives = 366/743 (49%), Gaps = 60/743 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +    + D    + +  V + + ++  YLTYA++ I GRA+PD RDGLKPVHRRIL+G
Sbjct: 1   MAKSGTPAGDAGGGEALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYG 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  + +  +  + KCA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG+
Sbjct: 61  MQTLRLAPDAPFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+   A  LL+ + +D +DFRPNY G  QEPVVL A  PN+L NG 
Sbjct: 121 VDGDAAAAYRYTEARMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IK 238
            GIAVGMAT++P HNL E+ D  + +I + +   + LM  ++GPDFPTG V++     I 
Sbjct: 181 QGIAVGMATSVPPHNLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIV 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRGS  +R   H E+T+  +   VVTEIPY V K+ ++EK+AEL+ +K+     D
Sbjct: 241 ETYRTGRGSFRLRARWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGD 300

Query: 299 LRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIG 356
           +RDES     RVVIE + R     +++  L++ + L+  F VNM  L     P   +L  
Sbjct: 301 VRDESAE-DVRVVIEPRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDE 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L+ ++  R EV+ RR+++ L     R  VL G+ I   NLDEV+RIIR    P+ A   
Sbjct: 360 ALRQWLDHRREVLERRSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQA--- 416

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L++VQ   IL+ RL  L  L   ++R E
Sbjct: 417 --------------------------LKSAFDLTDVQVDYILDTRLRALRRLEEMELRKE 450

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMED--- 529
              L  E  E   +L+  ++    I  ++  +K  +       RRT   +     +    
Sbjct: 451 REKLIEERAEIEGLLAEEAKQWKAITAQIRELKKTVGDPRLAKRRTTFEDAPEATDIDLA 510

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G++        RA +      S +  + +D +   F   T + V
Sbjct: 511 EALIEREPITVVVSQKGWI--------RALKGHVSDLSQLQFKGDDALDFSFFAQTTSKV 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  +S G  +     +LP G        L+  +  +            +      +  ++
Sbjct: 563 LALASNGKAFTLDASKLPGGRGHGEPIRLMAEIDEDA--------AIVKVFLHTPDALLL 614

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G       +D +   R G+    +D   ++  V    + + + +  +  + + FP
Sbjct: 615 LVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLKIVAP-AEGDHVAIIGENRKLLVFP 673

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +S     A     GVR      G
Sbjct: 674 LSEAPQMA--RGKGVRLQRYKDG 694



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 8/158 (5%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           KGD  +  +      +         K  +     + G       ++  + ++ + +  + 
Sbjct: 545 KGDDALDFSFFAQTTSKVLALASNGKAFTLDASKLPGGRGHGEPIRLMAEIDEDAAIVKV 604

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  +L VS+ G G   S  D   + R G+ +   D     +      +    + 
Sbjct: 605 F-LHTPDALLLLVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLK------IVAPAEG 657

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           D + ++ +   L+  P++E    +R  KGV +      
Sbjct: 658 DHVAIIGENRKLLVFPLSEAPQMAR-GKGVRLQRYKDG 694


>gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 741

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 247/734 (33%), Positives = 379/734 (51%), Gaps = 56/734 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           +       I   S+++ +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ ++ 
Sbjct: 2   TQPAVSGDIRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
              + KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD+++R  L+EGQGNFG++DGD  AA
Sbjct: 62  EGGFKKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNIDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L   A  L+++L  DTVDFRP YDGS +EPVV+ A +PN+L NG  GIAVGMA
Sbjct: 122 MRYTEAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAAGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRG 246
           TNIP HN+GE+ +    +I  PD  +D L+  + GPDFPTG V +  +  I  AY +GRG
Sbjct: 182 TNIPPHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHEAYRSGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R    +EK S    QI+VTEIPYQV K+ ++EKIAEL+ EK++  +AD+RDES   
Sbjct: 242 SFRLRAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADIRDESAED 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGILKAFVAFR 365
              V+    R   A++++ QL+R T L+   S+NM  L+         L  +L+AF+  R
Sbjct: 302 VRVVLEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQVLQAFLDHR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EV+ RR+++ L+K   R  VL G  +A  NLDEV+RIIR    P+              
Sbjct: 362 MEVLERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEPKAVMMR--------- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                               T  L+EVQT AIL +RL  L  L   +IR E + L  E  
Sbjct: 413 --------------------TFGLTEVQTEAILNMRLRSLRKLEEFEIRKEHDQLSAEKS 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL--DMEDEDCIVREDM 538
           +   +L+  SR    I  ++ + +           RRT++ +      +  E  + RE +
Sbjct: 453 DLEALLADESRRWSTIAAQVAATRKAFGPGTPLGDRRTQLADAPSAVVVPIEAFVEREPI 512

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        RA +       GV  ++ D +       T   +L F+S G  
Sbjct: 513 TLLLSEKGWI--------RAMKGHVDQLDGVKFKEGDQLKLALKAETTDKLLVFTSDGRF 564

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y     +LP G     G+ L  ++ +     +  +              ++ ++  G   
Sbjct: 565 YTIGGDKLPSGRGF--GEPLRLMIDMANDAEVLCVFA------HKPGRKLLLSSSGGRGF 616

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
             + ++ +   ++GK+ + L    E  +     + + + +     + + F    I V A 
Sbjct: 617 IVEEAEVLAQTKAGKMVLNLGDEGEKAAFCLPAEGDAVAIIGDNRKLLVFMAEEIPVMA- 675

Query: 719 RNSVGVRGISLAKG 732
               GV       G
Sbjct: 676 -RGRGVLLQKYRDG 688


>gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506]
 gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506]
          Length = 744

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 263/744 (35%), Positives = 387/744 (52%), Gaps = 64/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E  I +D+     I  + +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGEPPIPTDD---GTIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHGN AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGGGFRKSAKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AAERYTE RL + A  +LD + +D VDFRPNYDG+ +EPVV+   +PN+L NG  
Sbjct: 118 DGDNAAAERYTEARLTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGST 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E++D  + +IDNP    D L++ ++GPDFPTG  VI     I +
Sbjct: 178 GIAVGMATSIPPHNAAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIAD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R   H E+T      +VVTEIPY V K+ ++EKIA+L+ EK++  +AD+
Sbjct: 238 AYATGRGGFRLRARWHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E + R   A++++  L+R T L++ F +NM  L G + P+  +L   
Sbjct: 298 RDESAE-DVRLVLEPRARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ +V  R EV++RR+++ L +   R  VL G  IA  NLDEV+RIIR    P+      
Sbjct: 357 LREWVDHRREVLLRRSRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                  +    T  L++VQ  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------VELMRTFELTDVQAEAILNMRLRSLRKLEEFEIRKEH 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE---GLLDMED 529
           ++L  E      +L S +R    +  EL   +           RRT   E      D   
Sbjct: 448 DALSKEKDGIEKLLGSEARQWKTVAWELGETRKIFGPDTPLGRRRTGFGEAAAHDADAVS 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G++        RA +      S +  + +D +   F   T   +
Sbjct: 508 EALVEREPITVVVSEKGWI--------RALKGHVADLSALAFKGDDELRISFFTETTAKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y     +LP G  +  G+ L   + L Q   I  ++P            ++
Sbjct: 560 LVFATNGRFYTLDASKLPGG--RGHGEPLRLSIELEQEADIVDVLP------YQGGRKLL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A K G        + +   R GK  + +D +D +         + + +  +  + + FP
Sbjct: 612 VAAKEGRGFLVAEDECVANTRKGKQVLGVDGQDAVK--VIPAIGDSVAVIGENRKLLVFP 669

Query: 710 ISAIRVFAGRNSVGVRGISLAKGD 733
           +S I         GVR      G 
Sbjct: 670 LSQIPEMT--RGRGVRLQRYKDGQ 691


>gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
 gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11]
          Length = 782

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 256/739 (34%), Positives = 397/739 (53%), Gaps = 41/739 (5%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   + D      +    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M +
Sbjct: 6   DDQDTPDSPASGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNR 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DG
Sbjct: 65  LRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+   A  +L+ L ++ VDFR NYDG   EP VL A +PN+L NG  GI
Sbjct: 125 DNPAASRYTEARMTFIAEAMLEGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGASGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAY 241
           AVGMATNIP HN+ E++D C+ +I  PD   D L+  + GPDFPTG +I+     I  AY
Sbjct: 185 AVGMATNIPPHNIAELIDACIHLIRTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           +TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +AD+RD
Sbjct: 245 STGRGSFRLRCQHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRD 304

Query: 302 ESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGILK 359
           ES     R+++E K +    +V++N ++R + L+  FS+NM   ++G  P+  ++  +L+
Sbjct: 305 ESA-DDIRIILEPKSKNVDPEVLMNMMFRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+  R +V+ RR+++ ++K   R  VL G  IA  NLD V+ IIR+  +P   +  LM+
Sbjct: 364 AFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDP---KAALMR 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             W+    +   +    + Y    +G   L+EVQ  AIL +RL  L  L   ++  E ++
Sbjct: 421 EDWDRDHPRAYSE----AEYVSPGEGVGELTEVQAEAILNMRLRSLRRLEEIELTRERDA 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDC 532
           L  E    +++L S       I ++L   K +         RRTR  E     +   E  
Sbjct: 477 LREERAGLVELLGSEELQWSRITEQLKDTKKQFGKDYAGGARRTRFAEAGEVEDVPLEAM 536

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE + V  S +G++        RA          +  +D D    +F   T   +L F
Sbjct: 537 IDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVF 588

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP G  +  G+ L  ++ L     I  I+          +  ++ A+
Sbjct: 589 GSNGRFYTVSAANLPGG--RGMGEPLRLMVDLPNEVEIVDIL------IHNPDGRLLVAS 640

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             GN       D +   RSGK  + +   D+        + + + + ++ G+ + F +  
Sbjct: 641 DAGNGFICAEKDIVAQTRSGKQVLNVKDDDKAKIC-IPVEGDHVAVVSENGKFLVFSVEE 699

Query: 713 IRVFAGRNSVGVRGISLAK 731
           +       S G +G+ L K
Sbjct: 700 MPEL----SRG-KGVRLQK 713



 Score = 44.8 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 71/228 (31%), Gaps = 21/228 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    D+    R  + A   +  D  L      +   ++  +++G         IR   
Sbjct: 506 KKQFGKDYAGGARRTRFAEAGEVEDVPLEAMIDREPITVVC-SQMGW--------IRAMT 556

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R +    GD       + HA+      +             +           
Sbjct: 557 GHIDL-NRELKFKDGD---GPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPL 612

Query: 778 DSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              V+     E    L    +  +L  S+ G G   +  D     RSGK +         
Sbjct: 613 RLMVDLPNEVEIVDILIHNPDGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDKA 672

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +I       PV + D + +VS+ G  +   V E+   SR  KGV +  
Sbjct: 673 KI-----CIPV-EGDHVAVVSENGKFLVFSVEEMPELSR-GKGVRLQK 713


>gi|254525688|ref|ZP_05137740.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
 gi|221537112|gb|EEE39565.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Prochlorococcus marinus str. MIT 9202]
          Length = 813

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 255/750 (34%), Positives = 405/750 (54%), Gaps = 53/750 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +K ITS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+   + +
Sbjct: 2   NKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPERPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q +S +   +EG GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQKFSTKYPTLEGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHEGFLEEIGSETVSFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA++ N DI    L  II+GPDFPTG  ++    IK  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSRSIKELYETGKGSITI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV +IE+         +  I++TE+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVVNIEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP++  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGKPKQLNLKEYLSYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE++ +RT Y L    D+  +  GL+ A  N+ +V+ II  S N   AR +L++      
Sbjct: 362 EEIIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSVKARSKLIE------ 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I +E+  L  +  
Sbjct: 416 --------------------NFFLSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRED 537
               +L+ R  LL ++ +ELL +K + +  R+T++++ +   E+ +          + + 
Sbjct: 456 YFQKLLNERGILLELLVEELLILKKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKK 515

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             + + +  Y+KR+ L  Y+      K    V    ++     FI +   ++        
Sbjct: 516 TKLYIDNRLYLKRMILGNYK------KSFEVVNKIIDNKNIQKFICNIEKNIKLIGITNT 569

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
                +      S   +         +        I+ F   +    N Y+      G  
Sbjct: 570 GKVFNIDWESNISRDYKLDN-----KILGNIHANEIINFHSIKKETKN-YLCILNSDGRF 623

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRVF 716
           ++    + +  +       KL +  + +      +   +++ T +G+  +F + +     
Sbjct: 624 KKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNESKYLMILTSIGRIFKFNLSNKFLTP 683

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + S G+    L   ++++S       + 
Sbjct: 684 TSKQSQGLIITKLLPTEKIVSCCTFHDGEN 713


>gi|221229349|ref|YP_002502765.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
 gi|219932456|emb|CAR70099.1| putative DNA gyrase subunit A [Mycobacterium leprae Br4923]
          Length = 1249

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/780 (35%), Positives = 423/780 (54%), Gaps = 92/780 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  +++      
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVE------ 844

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 845  --------------------LLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1062 DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVRE---------------------------------------- 1140

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV 
Sbjct: 1141 -------------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRR--RGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|15826871|ref|NP_301134.1| putative DNA gyrase subunit A [Mycobacterium leprae TN]
 gi|13092418|emb|CAC29514.1| putative DNA gyrase subunit A [Mycobacterium leprae]
          Length = 1249

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/780 (35%), Positives = 423/780 (54%), Gaps = 92/780 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  +++      
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVE------ 844

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 845  --------------------LLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1062 DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVRE---------------------------------------- 1140

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV 
Sbjct: 1141 -------------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRR--RGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
 gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25]
          Length = 769

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 258/746 (34%), Positives = 381/746 (51%), Gaps = 45/746 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+        +E    + ++   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MTDTPDDPLNPQE---LTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+I+G+VMG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 58  RELRLASGGGFRKSAKIAGDVMGNFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL  L ++ VD+R NYDG+ +EPVVL A +PN+L NG  
Sbjct: 118 DGDSPAASRYTEARMTAAAEALLAGLDENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HNL EV+  C+ +I  P  D D+L+  I GPDFPTG  ++     I+ 
Sbjct: 178 GIAVGMATNIPPHNLDEVISACLHLIRAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQ 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    IE     + QI+VTEIPYQV K+ ++E++AEL+  K++  +AD+
Sbjct: 238 AYRTGRGAFRLRAKWEIEDLGRGQWQIIVTEIPYQVQKSKLIERLAELIALKKVPALADV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+VIE + R    ++++  L++ + L+  F++NM   ++G  P+  +L  +
Sbjct: 298 RDESA-DDVRIVIEPRVRTIEPEMLMGMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEV 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV+ RRT + L K   R  VL G   A  NLD V+ IIR+  +P+ A    
Sbjct: 357 LRAFLDHRREVLQRRTTHRLEKIDHRLEVLAGFITAYLNLDRVIDIIRYDEDPKAA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGT----MYLSEVQTRAILELRLARLTGLGRDDI 473
                 A D    I    D S  +   G       L+EVQ  AIL +RL  L  L   ++
Sbjct: 413 ----LQAEDWGLKIPRAADESRYVSPLGRPVAAGGLTEVQADAILNMRLRSLRRLEEIEL 468

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME 528
            NE ++L  E      ++         I  EL  V+ +         RRT   EG    +
Sbjct: 469 VNERDALQAERAGLHALMGDEKLQWSRISDELKDVRKQFGKTSKGGARRTAFGEGKEVAD 528

Query: 529 D--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              E  I RE + V  S +G++        RA +        +  +D D     F   T 
Sbjct: 529 VPLEAMIEREPVTVICSDMGWI--------RAMKGHIALDQEMKFKDGDKARFAFHAETT 580

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L F+S G  Y      LP G        L+  L  +            +        
Sbjct: 581 DRLLAFASNGRFYTVLAANLPGGRGTGEPLRLMVDLPNDAQ--------IVDLLIHRPGQ 632

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ A+  G+       D I   R+GK  + L      L V+     + +       + +
Sbjct: 633 KLILASSAGDGFIVAEDDVIAQTRAGKQVLNLSEGASALIVKPVQG-DHVACVGDNRKML 691

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG 732
            F +  +   A     GV+      G
Sbjct: 692 VFALDELPEMA--RGKGVKLQKFKDG 715


>gi|227431864|ref|ZP_03913888.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227352406|gb|EEJ42608.1| DNA topoisomerase IV subunit A [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 812

 Score =  579 bits (1493), Expect = e-163,   Method: Composition-based stats.
 Identities = 258/885 (29%), Positives = 418/885 (47%), Gaps = 96/885 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q    ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDRNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+    + ++D+P   L  LM  ++GPDFPTG ++ G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALIYLLDHPAATLSQLMRYVKGPDFPTGGIVQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I      +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TEISDLRAGKKKIEITELPYEVVKSNLVSKIDAIRLNKEVTGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF++FR+EVV++R+
Sbjct: 303 LSKEANANGILTYLFKKTDLQISYNFNMVAIHDQRPVHVGLKAGLEAFLSFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+               
Sbjct: 363 AYELTKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLI--------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E + L  +I     I+  
Sbjct: 408 -----------NHFEFTQAQAEAIVTLQLYRLTNTDVTQLEEEFSQLNDKINRLNQIIHE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I++E+ ++     +PRR+ I   + +  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ESALKDVIREEIKAITKAYSSPRRSVIEAEVENLVIDTAVTIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  ++A            + ++D V     ++T   +  F++ G V    V  LP    
Sbjct: 517 SLRSFKASDNEN------GLAEDDLVVFQGTLNTTNHLFMFTNKGNVIYRPVHELPDTKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QIN 669
           +  G+     LS    + +       ++        +V  +  G +++  L D +     
Sbjct: 571 KDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGAFTIV--SNDGFIKQTTLVDIVPKAYK 628

Query: 670 RSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +A+KL      +      Q     ++LL +  G  +R+ I  +     R S GV+ 
Sbjct: 629 KKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHKGVGLRYAIKEVPEIGSRTS-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D + +   +                                             
Sbjct: 688 MDLRDDDTIKAALFITDDK----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +  V+E G  K         S R  KG+      K      +     
Sbjct: 707 -----------QSVAIVAENGAFKYMPVSLINHSKRGNKGVLVF-TQKKTVAYKVATATI 754

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            + N + + +++ +  +  + +++   + R   G  +  T K+  
Sbjct: 755 FDSNVKALSVLTKRYQIQELELSDYHESQRIGNGQYVVDTDKNGE 799



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 73/222 (32%), Gaps = 25/222 (11%)

Query: 704 QCVRFPISAIRVFAGRNS----VGVRGIS-------LAKGDQVI---SMAIVLHADADYD 749
             V      ++V   RN       +R          LA+ D V+   ++    H     +
Sbjct: 494 TAVTIAEEDVQVLVSRNGYYKRASLRSFKASDNENGLAEDDLVVFQGTLNTTNHLFMFTN 553

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT-VSEKGF 808
           +     + +         DT E  S +  +  +  +  +      L++    T VS  GF
Sbjct: 554 KGNVIYRPVHELPDTKWKDTGEHFSQQLSNWDKDEVVIKAIAVDNLEQGGAFTIVSNDGF 613

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
            K+T+  D        K   A  + K       VA F       ++L+S KG  +R  + 
Sbjct: 614 IKQTTLVDIVPKAYKKKSSMAIKLKKDVSYVVNVAYFQNVKRQNVLLLSHKGVGLRYAIK 673

Query: 869 EIRIASRATKGVVIFSTAKDERV----------VSVERIRES 900
           E+      T GV       D+ +           SV  + E+
Sbjct: 674 EVPEIGSRTSGVKAMDLRDDDTIKAALFITDDKQSVAIVAEN 715


>gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
 gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62]
          Length = 771

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 268/744 (36%), Positives = 398/744 (53%), Gaps = 39/744 (5%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++    +  D  E   +    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDLTDDNNMDPPETGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 59

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 60  AMRELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFG 119

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+  AA  LL+ L ++ VD+R NYDG+  EPVVL A +PN+L NG
Sbjct: 120 NIDGDNPAASRYTEARMTAAAEALLEGLNENAVDYRENYDGTLTEPVVLPATFPNLLANG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-I 237
             GIAVGMATNIP HN+ E+VD C+ +I  P+   + L+E++ GPDFPTG VI+     I
Sbjct: 180 SSGIAVGMATNIPPHNIPELVDACLHLIKAPNARDETLIEMVPGPDFPTGGVIVEPKENI 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            NAYATGRGS  +R    IEK    + QIVVTEIPYQV K+ ++EKIAE+++ K+I  +A
Sbjct: 240 LNAYATGRGSFRLRCKWEIEKLDRGQWQIVVTEIPYQVQKSKLIEKIAEVIQLKKIPILA 299

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLI 355
           D+RDES     R+VIE K +    +V++N LYR + L+  FS+NM   ++G  P+  +L 
Sbjct: 300 DVRDESA-DDVRMVIEPKSKNVDPEVLMNMLYRNSDLEVRFSMNMNVLIDGLTPKVCSLK 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+AF+  R EV++RR+++ + K   R  VL G  +A  NLD V+ IIR+  +P   + 
Sbjct: 359 EVLRAFLDHRREVLIRRSQHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDP---KA 415

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++  W+ +  + + +       +        LSEVQ  AIL +RL  L  L   ++  
Sbjct: 416 ALIREDWSLTHKRAMDE---TDYLSPALRDEEGLSEVQAEAILNMRLRSLRRLEELELLR 472

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME-- 528
           E ++L  E  E  D+L S       I ++L   + +         RRT   E     +  
Sbjct: 473 EQSALMEERAELEDLLDSDDLQWSRISEQLRETRKQFGKNYKGGARRTLFAEAAEVEDVP 532

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  I RE + +  S +G+V        RA          +  +D D    +F   T   
Sbjct: 533 IEAMIEREPITIVCSKMGWV--------RALSGHVDLARELKFKDGDEARFMFHAETTDR 584

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F + G  Y      LP G  +  G+ L  ++ L             +         +
Sbjct: 585 LLVFGTNGRFYTVSASNLPGG--RGMGEPLRLMVDLPNEAD------IVDFFIHQPERKL 636

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  G+      +D I   R+GK  + +     +  V      + +    +  + + F
Sbjct: 637 LVASSAGDGFIVPEADVIAQTRTGKQVLNVKDG-VMAKVCITVTGDHVACVGENRKVLVF 695

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           PI  +    GR   GVR      G
Sbjct: 696 PIEELPEM-GRG-KGVRLQKYKDG 717



 Score = 41.7 bits (96), Expect = 0.52,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R+    ++    R    A   +  D  +      +   I+  +K+G         +R  +
Sbjct: 506 RKQFGKNYKGGARRTLFAEAAEVEDVPIEAMIEREPITIVC-SKMGW--------VRALS 556

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R +    GD+   M      D           +  +   L  G          
Sbjct: 557 GHVDLA-RELKFKDGDEARFMFHAETTDRLLVFGTNGRFYTVSASNLPGGRGMGEPLRLM 615

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                     +    +   E+ +L  S  G G      D     R+GK +          
Sbjct: 616 VDLPNEADIVDFF--IHQPERKLLVASSAGDGFIVPEADVIAQTRTGKQVLNVK------ 667

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            G +  V      D +  V +   ++  P+ E+    R  KGV +      
Sbjct: 668 DGVMAKVCITVTGDHVACVGENRKVLVFPIEELPEMGR-GKGVRLQKYKDG 717


>gi|13638291|sp|Q57532|GYRA_MYCLE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mle gyrA
            intein
          Length = 1273

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/780 (35%), Positives = 423/780 (54%), Gaps = 92/780 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  +++      
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVE------ 844

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 845  --------------------LLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1062 DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVRE---------------------------------------- 1140

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV 
Sbjct: 1141 -------------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRR--RGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|1122296|emb|CAA92430.1| DNA gyrase A subunit [Mycobacterium leprae]
 gi|1262357|emb|CAA94713.1| DNA gyrase A, and intein [Mycobacterium leprae]
          Length = 1273

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/780 (35%), Positives = 423/780 (54%), Gaps = 92/780 (11%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL   A  +L ++ ++TVDF  NYDG  QEP+VL +R+PN+L NG GGIAVGMATNI
Sbjct: 551  TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610

Query: 191  PTHNLGEVVDGCVAVIDNPDID----LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+ D     ++N D D    L A+ME ++GPDFPT  +I+G  GI +AY TGRG
Sbjct: 611  PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQGIADAYKTGRG 670

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDR 305
            SI IRGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR  R+  I+++ D+ SDR
Sbjct: 671  SIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSDR 730

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+VIE+KR A A V+LN LY++T LQ+ F  NM+++    P    L  ++  +V  +
Sbjct: 731  VGVRIVIEIKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQMICYYVEHQ 790

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR  +++      
Sbjct: 791  LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVE------ 844

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + ++Q +AIL+++L RL  L R  I ++L  + +EI 
Sbjct: 845  --------------------LLDIDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIA 884

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R  GII+ EL  + ++    RRTRI+    D+ DED I RE++VVT++  
Sbjct: 885  DLGDILAKPERRRGIIRNELTEIAEKYGDDRRTRIIAVDGDVNDEDLIAREEVVVTITET 944

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR    +YR+Q+RGGKG  G  ++ +D V   F+ STH  +LFF++ G VY+ K + 
Sbjct: 945  GYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYE 1004

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  ARG+ + N+L+    ERI  ++     E   +  Y+V AT+ G V+++KL+DF
Sbjct: 1005 LPEASRTARGQHVANLLAFQPEERIAQVIQIRSYE---DAPYLVLATRAGLVKKSKLTDF 1061

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G +A+ L   DE++    C  + D+LL +  GQ +RF  +   +R   GR + G
Sbjct: 1062 DSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSANGQSIRFSATDEALRPM-GRATSG 1120

Query: 724  VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            V+G+     D+++S+ +V                                          
Sbjct: 1121 VQGMRFNADDRLLSLNVVRE---------------------------------------- 1140

Query: 784  NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                         + ++L  +  G+ KRTS  ++ +  R GKG+      +    G+LV 
Sbjct: 1141 -------------DTYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRR--RGSLVG 1185

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               V+++ ++  ++  G +IR    ++R A R TKGV + +  + + ++++ R  E    
Sbjct: 1186 AIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLLAIARNAEESAD 1245



 Score =  264 bits (675), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 91/130 (70%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +   +   + +  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDITLPPGDGSIQRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           +  G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  LDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERY 130
             DPPAA RY
Sbjct: 121 GNDPPAAMRY 130


>gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
 gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2]
          Length = 767

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 257/742 (34%), Positives = 395/742 (53%), Gaps = 39/742 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+       E ++   S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MTKAPQDPKIEPQE--HSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELKLSPTSAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  L++ L ++ VDFRPNYDG+ +EPVV+ A +P++L NG  
Sbjct: 119 DGDNPAASRYTEARLTAIAEALMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HNL E++DGC+A+I +PD+   AL+++I GPDFPTG  ++  R  I +
Sbjct: 179 GIAVGMATNIPPHNLHELIDGCLALIKHPDLPDAALVDLIPGPDFPTGGVIVEPRASILD 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRGS  +R    +E     + QIVVTEIPYQV K+ ++E++AEL++ K+   +AD+
Sbjct: 239 SYRTGRGSFRLRARWAVEDLGRGQWQIVVTEIPYQVQKSKLIERLAELIQTKKTPLLADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+++E + R    D+++  L+R + L+  FS+NM   ++G  P+  +L  +
Sbjct: 299 RDESTA-DVRLILEPRVRTVDPDMLMGTLFRNSDLELRFSLNMNVLIDGRTPKVCSLREV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  + EV+ RR+++ L K   R  +L G  I   NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDHKREVLQRRSRHRLEKIDHRLEILEGFIITFLNLDRVIDIIRYDADPKRA---- 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                     K       +  Y   + G   L+EVQ  AIL +RL  L  L   ++  E 
Sbjct: 414 ---LMAEDWGKKHRRATSEKDYVPPAPGEGELTEVQAEAILNMRLRSLRRLEELELIAER 470

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME--DE 530
           ++L +E     D+L+S +     I ++L  V+           RR+   E     E   E
Sbjct: 471 DALMVERAGLEDLLASDALQWKRIGKDLAEVQKTFGKASKGGARRSTFAEAGEAEEVPYE 530

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G++        RA +      S    +D D    LF   T   ++
Sbjct: 531 AMIEREPITVICSKMGWI--------RAMKGHVALDSEQKFKDGDEGRFLFHAETTDRII 582

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G VY      LP G  +  G+ +  ++ L             +       L ++ 
Sbjct: 583 LIGSNGRVYTLLGANLPGG--RGMGEPVRLMVDLPNDAE------IIDLMIHRPGLKLLI 634

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       + +   ++GK  + +    +          + + +     + + FP+
Sbjct: 635 ASTAGDGFVLPSDEVVAQTKAGKQVLVVREGVKTALCRPVKG-DAVAVVGDNRKMLVFPL 693

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +   A     GVR      G
Sbjct: 694 ADLPEMA--RGKGVRLQKYKDG 713


>gi|157412343|ref|YP_001483209.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
 gi|157386918|gb|ABV49623.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9215]
          Length = 813

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 259/750 (34%), Positives = 413/750 (55%), Gaps = 53/750 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +K ITS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ +
Sbjct: 2   NKKNITSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDRPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S +   +EG GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLEGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV F  N+DGS +EP +L A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHKGFLEEIGSETVSFSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG VA++ N DI    L  II+GPDFPTG  ++    IK  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVALVKNKDISDKKLFNIIKGPDFPTGGELIYSHAIKELYETGKGSITI 241

Query: 251 RGVSHIEKT-----SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV ++E+         +  I++TE+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVVNMEEVYLGKGKHKKNAIIITELPYQINKAGWIEKLAELVNSGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP++  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKQTTLQTNFGAIFLALIKGKPKQLNLKEYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    D+  +  GL+ A  N+ +V+ II  S N E AR +L++      
Sbjct: 362 EETIRKRTIYFLKNTLDKLEISEGLSKATKNIKKVIGIIEESENSEKARSKLIE------ 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I +E+  L  +  
Sbjct: 416 --------------------NFFLSEKQANSVLDMPLKKLTNLEKNKIDDEIKHLKEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRED 537
               +L+ R  LL ++ +ELL +K + +  R+T++++ +   E+ +          + + 
Sbjct: 456 YFQKLLNERGLLLELLVEELLILKKKYNVLRKTKVIKNINQNEELETLNNQILEDFINKK 515

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             + + +  Y+KR+ L  Y+      K    V    ++     FI +   ++      G 
Sbjct: 516 TKLYIDNRLYLKRMILGNYK------KSFEVVNKIIDNKNIQKFICNIEKNIKLI---GI 566

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
               KV+ +   S   +   L N   +        I+ F   +    N Y+      G  
Sbjct: 567 TNTGKVFNIDWESSINKDYKLDN--KILGNIHANEIINFHSIKKETKN-YLCILNSDGRF 623

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRVF 716
           ++    + +  +       KL +  + +      +   +++ T +G+  +F + +     
Sbjct: 624 KKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNESKYLMILTSIGRIFKFNLSNKFLTP 683

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + S G+    L   ++++S       + 
Sbjct: 684 TSKQSQGLIITKLLPTEKIVSCCTFHDGEN 713


>gi|296111946|ref|YP_003622328.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
 gi|295833478|gb|ADG41359.1| DNA topoisomerase IV subunit A [Leuconostoc kimchii IMSNU 11154]
          Length = 812

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 256/834 (30%), Positives = 407/834 (48%), Gaps = 53/834 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTYDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++QDW +R  LI+  GN GS+D DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQDWKVREPLIDMNGNNGSIDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R P++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMADLGQETVDMVLNFDDTTYEPTVLPSRIPSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+      ++D+P+  L  LM  ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINAALTYLLDHPEAPLSTLMRYVKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I +  G +++I VTE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TAISELKGGKKKIEVTELPYEVVKSNLVSKIDGIRLNKEVAGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L + A+A+ IL  L++ T LQ  ++ NMVA++  +P    L   L+AF+ FR+EVV++R+
Sbjct: 303 LTKDANAEGILTYLFKKTDLQIAYNFNMVAIHDQRPVHVGLKQGLQAFLGFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LD+VV  IR S N   A + L+ +             
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDQVVATIRASKNRRDATQNLITQ------------- 409

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           ++ Q  AI+ L+L RLT      +  E  +L  +I     I++ 
Sbjct: 410 -------------FQFTQPQAEAIVTLQLYRLTNTDVTQLEEEFATLAAKIDRLTLIINE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I+ E+ ++     + RR+ I   + D  ++    I  ED+ V VS  GY KR 
Sbjct: 457 ASALNDVIRDEITAITTSYRSQRRSEIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRS 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            +  Y+A            + D+D V     ++T   +  F++ G +    V  LP    
Sbjct: 517 SIRSYKASDSDN------GLADDDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQIN 669
           +  G+     LS    +         +         +V  +  G +++  L+D       
Sbjct: 571 KDTGEHFSQQLSNWHADEFVIQAAVVDTLDQGGAFTIV--SNDGFIKQTTLNDMLPKAYK 628

Query: 670 RSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +A+KL +    +        T   ++LL +  G  +RF ++ +     R + GV+ 
Sbjct: 629 KKTAMAIKLKTDASYVVNVSYFKATATPEVLLLSHHGIGLRFKLTDVPEIGPRTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D +++   +                       I+        L   +  +    
Sbjct: 688 MDLRGDDLIMAALFITDKTQQVAIVARNGAFKYMPISEINMSKRANKGLLIFTQKKTVAY 747

Query: 787 EERCQELKLKEQFILTV------SEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                 +    +  L +      ++          D+R S R G G    DV K
Sbjct: 748 HVATATIFGNNETALEILTTRWQTQN-----LQLSDYRPSQRVGNGQYVVDVKK 796



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 76/246 (30%), Gaps = 26/246 (10%)

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGV 724
                  +  ++ +  D ++       E D+ +  ++ G   R  I + +     N    
Sbjct: 473 TSYRSQRRSEIEAEVEDLVIDTAVTIAEEDVQVLVSRNGYYKRSSIRSYKASDSDNG--- 529

Query: 725 RGISLAKGDQVISMAIVLHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
               LA  D V+    +              + Y               E  +   ++  
Sbjct: 530 ----LADDDMVVFEGQLNTTQHLFMFTNKGNLIYRPVHELPDSKWKDTGEHFSQQLSNWH 585

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD-----FRISNRSGKGIRATDVSKI 835
            +  + +    +   +      VS  GF K+T+  D     ++          A  +   
Sbjct: 586 ADEFVIQAAVVDTLDQGGAFTIVSNDGFIKQTTLNDMLPKAYKKK-------TAMAIKLK 638

Query: 836 NEIGALVAV--FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            +   +V V  F      +++L+S  G  +R  + ++      T GV       D+ +++
Sbjct: 639 TDASYVVNVSYFKATATPEVLLLSHHGIGLRFKLTDVPEIGPRTAGVKAMDLRGDDLIMA 698

Query: 894 VERIRE 899
              I +
Sbjct: 699 ALFITD 704


>gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8]
 gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8]
          Length = 777

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 274/814 (33%), Positives = 410/814 (50%), Gaps = 76/814 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCA 75
            ++ + +  +  YL YA++VI  RA+PD+RDGLKPV RRILF M   + +  +K++ K A
Sbjct: 5   ETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GE MGKYHPHG+ AIYDA+ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE +L
Sbjct: 65  TVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q  A  +L+ L  +TVD+R N+DGS +EPVVL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 125 QPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           GEVVD  + +I+ P++     + + I+GPDFPTG  IL  +  +   Y TG G+I +RG 
Sbjct: 185 GEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGA 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                 +  + + ++  +PY V+K+ ++E+IA+ + E+ +  ++++RDES     R+V+E
Sbjct: 245 YR----TKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDES-TDDVRIVLE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGILKAFVAFREE 367
           LKRG+  +  +  L+++T LQ  F VN+  L   +      P++  L  IL+ F+ FR +
Sbjct: 300 LKRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLD 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR +  L +   R H+L G       LDE + IIR S N   A + LM R       
Sbjct: 360 VVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L E QT AILE +L +L+ +  + IR+EL       +E 
Sbjct: 413 -------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEKRARAEEI 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHL 545
             +L       GI+K EL  ++DE    RR+ +V    DME   ED IV ED+ V V+  
Sbjct: 454 RRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPEADMEYTEEDYIVDEDVHVIVTRD 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+VKR                  +  RD D V      ST  +V FF++ G  Y  ++  
Sbjct: 514 GWVKRQGTYS---------DLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTTRITE 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE---------------------DESSWN 644
           +P       G  +  + S + GE +  ++ F +                     D  + +
Sbjct: 565 IPST--TGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDAPD 622

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLG 703
             YVV  +K G   R  L  +++ + S  +  M+L+  DE+  V     + +I L +  G
Sbjct: 623 QPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENICLASHDG 682

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + + FP+  + V+ G  + GVR I L   D+V+  A+   A           +    +  
Sbjct: 683 RALVFPVHQVSVYKG-PAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNNGREEIVRTT 741

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                                       E+ L E
Sbjct: 742 KFDATNRGAKGTLVIKRGYFAEVFPEPVEVPLHE 775



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 81/267 (30%), Gaps = 45/267 (16%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M + E++   +    V  T+ G V+R       Q   S   A++    DE+      +  
Sbjct: 493 MEYTEEDYIVDEDVHVIVTRDGWVKR-------QGTYSDLDAIRTRDGDEVGWALAGSTR 545

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   T  G C    I+ I    G      +  S   G+ V+ +               
Sbjct: 546 ATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV-------------- 591

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                       S D   +         E     +        + +++ +S+ G   R +
Sbjct: 592 ------------SFDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFT 639

Query: 814 SYDFR----ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              +      + R           ++ +   +  V     ++ I L S  G  +  PV++
Sbjct: 640 LDGYLEPSISTGR--------KYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQ 691

Query: 870 IRIASRATKGVVIFSTAKDERVVSVER 896
           + +     KGV       ++RV+    
Sbjct: 692 VSVYKGPAKGVRAIRLEDNDRVLDFAL 718


>gi|238917146|ref|YP_002930663.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
 gi|238872506|gb|ACR72216.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750]
          Length = 769

 Score =  579 bits (1492), Expect = e-163,   Method: Composition-based stats.
 Identities = 242/765 (31%), Positives = 402/765 (52%), Gaps = 51/765 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ Y+++VI  RA+PD+RDGLKPV RR+L+ M ++G+ ++K + K
Sbjct: 3   EKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L+K    + L DL K+ VDF PN+D + +EP VL  R PN+LVNG  GIAVGM TNIP 
Sbjct: 123 KLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTNIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EVVD   A +DN DI  D LM++  GPDFPTG +++ ++ +   Y TG G I +RG
Sbjct: 183 HNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVINKSELGAIYETGTGKIKLRG 242

Query: 253 VSHIEKTSGDRE--QIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQG 307
               E      E  ++V+TEIPY +  A + + I++   L+  K+  DI D+ +ES ++G
Sbjct: 243 KVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNESSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A    + N LY+ T L+  F VNM+A+   +PE   +  I+K  + F+ E
Sbjct: 303 IRIVLELKKNADVKNLENLLYKKTKLEDTFGVNMLAIVDGRPETLGIKDIIKHHINFQYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+   LL K +    +  GL  A   +D ++ I+R S N + A+  L+  +      
Sbjct: 363 LATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNGNVEGIKF 422

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K           +      +  +E Q  AILE+RL +L GL   +++ E +    +I++ 
Sbjct: 423 KS--------EQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL SR  +  +IK +LL++K E    RRT I +G   + +E  I   +++  +   GY
Sbjct: 475 EKILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGEAAVFEEKKIPEMEVMFIMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            + + ++ +   +              +    +  V     +  F+  G +++ K+  LP
Sbjct: 535 ARTIDMAAFERNKDAVF----------NENKYVIPVMNTDKICIFTDTGDLHQLKIKDLP 584

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G  + N+ + +  + I   +   E      N  ++F T+ G ++     +F  
Sbjct: 585 FTKFRDKGTPIDNLCNYDSSKEIIVYITPFE---RLKNQKMLFVTRQGMMKLVDSEEFQV 641

Query: 668 INRSGKIAMKLDSRDEILSV----------------------ETCTQENDILLTTKLGQC 705
                    KL   D+++ +                      E      ++++ T+ G  
Sbjct: 642 AK-RTVACTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVF 700

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++FP++ I     +++VGVRGI L+K D +  + ++   D    E
Sbjct: 701 LKFPLTDI-PMKKKSAVGVRGIKLSKDDYIEDVFLLTEGDEFTME 744



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 64/196 (32%), Gaps = 28/196 (14%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +   VI +          D    +   +         D         +      I   
Sbjct: 551 FNENKYVIPVMNTDKICIFTDTGDLHQLKIKDLPFTKFRDKGTPIDNLCNYDSSKEIIVY 610

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF--- 845
                +LK Q +L V+ +G  K   S +F+++ R          +K+ +   L+ ++   
Sbjct: 611 ITPFERLKNQKMLFVTRQGMMKLVDSEEFQVAKR------TVACTKLADDDKLIGMYSTD 664

Query: 846 -------------------PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                               V  N  +I+ ++ G  ++ P+ +I +  ++  GV     +
Sbjct: 665 ARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKFPLTDIPMKKKSAVGVRGIKLS 724

Query: 887 KDERVVSVERIRESEI 902
           KD+ +  V  + E + 
Sbjct: 725 KDDYIEDVFLLTEGDE 740


>gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
 gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45]
          Length = 813

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/780 (32%), Positives = 391/780 (50%), Gaps = 69/780 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     + +      S  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 1   MSDTTTPPELDPND--LSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  +L+ L ++ VD+R NYDG+  EPVVL A++PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEAMLEGLNENAVDYRENYDGTLTEPVVLPAQFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HN+ E+ D C+ +I  PD   + L+  + GPDFPTG  ++     I N
Sbjct: 179 GIAVGMATNIPPHNIAELCDACIHLIKTPDARDETLLNYVPGPDFPTGGVIVEPPENIAN 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E       QIVVTEIPYQV K+ ++EKIAEL++ K+I  +AD+
Sbjct: 239 AYRTGRGSFRLRCRWEVEDLGRGAWQIVVTEIPYQVQKSKLIEKIAELIQAKKIPILADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R++IE + +     V++  L+R + L+  FS+NM   ++G  P+  +L  +
Sbjct: 299 RDESAE-DVRMIIEPRSKNVDPAVLMGMLFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA---- 413
           L+AF+  R EV+ RR+++ ++K   R  VL GL  A  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDHRREVLQRRSRHRMDKIDHRLEVLQGLITAFLNLDRVIEIIRYDDDPKAALMYE 417

Query: 414 -----RRELMQRSWNAS---------DIKDLIDLIDDSSYTIG---------------SD 444
                 ++ + R+ + +         D+  L  + D  +   G               + 
Sbjct: 418 DWSRVHQDTLARAMDEAAYISPLAGVDVSKLAVIADAEAQATGVLTESGDTRAVPHSYAG 477

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+VQ  AIL +RL  L  L  D +  E ++L  E     D+L +       I  +
Sbjct: 478 RENGLSDVQAEAILNMRLRSLRRLEEDALVKERDTLMSERAGLEDLLDNEDLQWTTIADQ 537

Query: 505 LLSVKDELDTP----------RRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYVKRVP 552
           L + K +              R +         +   E  I RE + V  S +G++    
Sbjct: 538 LRATKKQFGKDWVIDGIKRGQRLSTFETAGEVEDVPIEAMIDREPITVVCSQMGWI---- 593

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               RA          +  +D D    +F   T   +L F S G  Y      LP G  +
Sbjct: 594 ----RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGG--R 647

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G+ L  ++ L    +I ++              ++ A+  G+       + +   RSG
Sbjct: 648 GMGEPLRLMVDLPNEVQIVSLF------IHQPGRKLLVASSAGDGFVVPEDEVVAQTRSG 701

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K  + +        V      + +    +  + + F +  +    GR   GVR      G
Sbjct: 702 KQVLNVRGDGVAALVCHPVSGDSVATVGENRKVLVFGLDELPEM-GRG-KGVRLQKYKDG 759


>gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
 gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6]
          Length = 781

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 260/743 (34%), Positives = 393/743 (52%), Gaps = 43/743 (5%)

Query: 1   MTEHIISSD--EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I   D  + ++  I    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MNDLIDDPDSVKPQDGEILE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 59

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  N  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 60  AMNRLRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 119

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ L +D VDFR NYDG   EP VL A +PN+L NG
Sbjct: 120 NIDGDNPAASRYTEARMTFVAEAMLEGLSEDAVDFRDNYDGRLTEPAVLPATFPNILANG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-I 237
             GIAVGMATNIP HN+ E++D CV +I  PD   D L+  + GPDFPTG +I+     I
Sbjct: 180 AAGIAVGMATNIPPHNIAELIDACVHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENI 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY+TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 240 AKAYSTGRGSFRLRAKHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 299

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLI 355
           D+RDES     R+++E K +    DV++N ++R + L++ FS+NM   ++G  P+  ++ 
Sbjct: 300 DVRDESAE-DIRIILEPKSKNVDPDVLMNMMFRNSDLETRFSLNMNVLIDGVTPKVCSMK 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A  
Sbjct: 359 EVLRAFLDHRRDVLQRRSRHRMAKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAA-- 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                       +D      ++ Y   + GT  LSEVQ  AIL +RL  L  L   ++  
Sbjct: 417 -----LMREDWGQDHPRAFSEAEYVSPAKGTGELSEVQAEAILNMRLRSLRKLEEIELTR 471

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED- 529
           E ++L  E    +++L S       I ++L   K +         RRT   E     E  
Sbjct: 472 ERDALREERAGLVELLGSEELQWTRITEQLRETKKQFGKDYEGGARRTLFAEAGEVEEVP 531

Query: 530 -EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  I +E + V  S +G+V        RA          +  +D D    +F   T   
Sbjct: 532 LEAMIDKEPITVVCSQMGWV--------RAMTGHIDLSRELKFKDGDGPRFIFHAETTDR 583

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F S G  Y      LP G  +  G+ +  ++ L             +         +
Sbjct: 584 LLVFGSNGRFYTLSAANLPGG--RGMGEPVRLMVDLPNEAE------IVDLLIHNPEGRL 635

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN       + +   RSGK  + +   D           + + + ++ G+ + F
Sbjct: 636 LVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDDRAKICIPVQG-DHVAVVSENGKFLVF 694

Query: 709 PISAIRVFAGRNSVGVRGISLAK 731
            +  +       S G +G+ L K
Sbjct: 695 SVEEMPEL----SRG-KGVRLQK 712



 Score = 44.4 bits (103), Expect = 0.086,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 12/173 (6%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   G   +  R +    GD       + HA+      +             +      
Sbjct: 551 VRAMTGHIDLS-RELKFKDGD---GPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRG 606

Query: 773 TSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                   V+     E    L    E  +L  S+ G G   +  +     RSGK +    
Sbjct: 607 MGEPVRLMVDLPNEAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVK 666

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                +I       PV   D + +VS+ G  +   V E+   SR  KGV +  
Sbjct: 667 DDDRAKI-----CIPVQ-GDHVAVVSENGKFLVFSVEEMPELSR-GKGVRLQK 712


>gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 740

 Score =  579 bits (1491), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/739 (33%), Positives = 372/739 (50%), Gaps = 60/739 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     ++  E    I   S +D +   YL YA++ I  R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MANDTYTNPGE---HIDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++  + + K AR+ G+VMGK+HPHG+AAIYDA+ R+AQ++++R  L++GQGNFG++
Sbjct: 58  RQLKLDPGQGFKKSARVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LLD + +D+VDFRP YDG  +EPV+L A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTEARMTEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +P+  +D LM+ ++GPDFPTG  ++     I++
Sbjct: 178 GIAVGMATSIPPHNVIELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIRD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R    IEK  G   QIVVTEIPYQV K+ ++E++AE++  K++  +AD+
Sbjct: 238 AYATGRGGFRVRARWEIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLADI 297

Query: 300 RDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           RDES     R+V+E K      ++++  L++ + L++   +N+  L+   +P    L G 
Sbjct: 298 RDESAE-DLRIVLEPKSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L A++A R+ V+ RR  + L K   R  VL G  I   NLDEV+ IIR S +P  A    
Sbjct: 357 LNAWLAHRQVVLQRRAHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+E Q  AIL++RL  L  L    +R E 
Sbjct: 413 -------------------------LIARFDLTETQANAILDMRLRSLRRLEEMALRTER 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTR--IVEGLLDMEDEDCI 533
           ++L  E  +  ++L++       I  E+  +KD       RRT       +     E  +
Sbjct: 448 DNLVAEQADLQNLLANEDLQWKKIATEIKDMKDSFAKHDRRRTTLADAPEIDFDPTEILV 507

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            RE + +  S  G++        RA +   +  S    ++ D    +    T   +L F+
Sbjct: 508 EREPITIICSAKGWI--------RAMKGHQELDSEFKFKEGDGPGLVLHAETTDKILLFA 559

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
             G  Y     RLP G       +L+  L  +                    + V  +T 
Sbjct: 560 DNGRFYTLAGDRLPRGRGFGEPVSLLTDLPADIEI-------ITLLRGVAGKMLVAASTG 612

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           HG +    +   I   RSGK  + L   D           + +       + + FPIS +
Sbjct: 613 HGLI--VDMQSAIAQTRSGKQILNLP-GDARAVACCMVDGDMVASVGVNRKLLAFPISEL 669

Query: 714 RVFAGRNSVGVRGISLAKG 732
                    GV       G
Sbjct: 670 PEMT--RGRGVILQRFKDG 686


>gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814]
 gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814]
          Length = 750

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/739 (32%), Positives = 378/739 (51%), Gaps = 62/739 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   + D  ++ GI    ++D +   YL YA++ I  RA+PD+RDGLKPVHRR+++ M
Sbjct: 1   MSDEFKTDD--QDNGIIEEPMSDALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +     + K AR+ G+V+GKYHPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 59  RLLKLNPELAFKKSARVVGDVIGKYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  LL+ L ++ VDF+  YDG  +EPVVL + +PN+L NG  
Sbjct: 119 DGDSAAAMRYTESRLTPAAQLLLEGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKN 239
           GIAVGMAT+IP HN  E +D C+ +I+N       L++I+ GPDFPTG  I      I  
Sbjct: 179 GIAVGMATSIPPHNAAETIDACIHLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSILK 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       QIVVTEIPYQV K+ ++E++AEL+  K+   + D+
Sbjct: 239 AYETGRGGFRMRCKWEKEDLPRGLWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            DES      V++   +    DV++  LY+ + L+S FS+NM  L+   P    L  +L+
Sbjct: 299 MDESAEDIRVVLVPRNKLVDPDVLMASLYKMSDLESRFSLNMNVLDHNVPRVMGLKQVLQ 358

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++A R+EV+VRR ++ L+K   R H+L G   A  N+DEV+RIIR+  +P   + ELM+
Sbjct: 359 CYLAHRQEVIVRRAQHRLDKIEARLHILEGYLKAYLNIDEVIRIIRYEDHP---KEELMK 415

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE+QT AIL +RL  L  L   +I+ E + 
Sbjct: 416 --------------------------AFKLSEIQTDAILNMRLRALRKLEEIEIQGEHDK 449

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED---ED 531
           L  E  + + ++ S +R    +K++L   ++  D       RR++    +    D   E 
Sbjct: 450 LTQERDKLVQLIGSEARQWTEVKRQLKIAREVFDPESDLGRRRSKFGVAVEIDADAALEA 509

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E + V +S +G++        RA +   +    +  +D D +       T   V+ 
Sbjct: 510 MIPKEPITVILSKMGWI--------RALKGHNQAMDKLKFKDGDELAFTLECQTTDKVVL 561

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            +S G  +     +LP G  +  G+ +   + L + E I   +              V A
Sbjct: 562 LASGGKAFTFAADKLPSG--RGHGEPIRLSIDLPEDEEIIATITPKTGYRR------VVA 613

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G        + +   R GK+                 + + + +     + + FP+ 
Sbjct: 614 STAGYGFVVNEEELVSQKRGGKVIQNPPDGATFAFC-PRVEGDMVAVIGDNKKILFFPLE 672

Query: 712 AIRVFAGRNSVGVRGISLA 730
            +       + G +G+ L 
Sbjct: 673 ELPEM----ARG-KGVKLQ 686



 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 26/227 (11%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             SD  +      +A+++   D  L      +   + + +K+G         IR   G N
Sbjct: 484 PESDLGRRRSKFGVAVEI-DADAALEAMIPKEPITV-ILSKMGW--------IRALKGHN 533

Query: 721 SVGVRGI---SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
               + +       GD++     +     D    +                         
Sbjct: 534 ----QAMDKLKFKDGDEL--AFTLECQTTDKVVLLASGGKAFTFAADKLPSGRGHGEPIR 587

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
            S       E             +  S  G+G   +  +     R GK      V +   
Sbjct: 588 LSIDLPEDEEIIATITPKTGYRRVVASTAGYGFVVNEEELVSQKRGGK------VIQNPP 641

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            GA  A  P  + D + ++ D   ++  P+ E+   +R  KGV + +
Sbjct: 642 DGATFAFCPRVEGDMVAVIGDNKKILFFPLEELPEMAR-GKGVKLQN 687


>gi|148985114|ref|ZP_01818353.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922559|gb|EDK73677.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 689

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 296/766 (38%), Positives = 443/766 (57%), Gaps = 88/766 (11%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+D
Sbjct: 5   KNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMD 64

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  + IE T   RE+IV
Sbjct: 65  NPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIV 124

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE+KR ASA+VILN L
Sbjct: 125 VTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANVILNNL 184

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT++   KA  RAH+L
Sbjct: 185 FKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHIL 244

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA+ ++DEV+RIIR S     A+ ELM +                           
Sbjct: 245 EGLLIALDHIDEVIRIIRASETDAEAQAELMSK--------------------------F 278

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LSE QT+AIL++RL RLTGL RD I++E + L   I +  DIL+   R+  IIK EL  
Sbjct: 279 KLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDE 338

Query: 508 VKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
           VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR+    + AQ+RGG+G 
Sbjct: 339 VKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 398

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     A+G  ++N+L L++
Sbjct: 399 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 458

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G  A+ L   DE+++
Sbjct: 459 DESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELIN 516

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +GD V+  +       
Sbjct: 517 VLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGAS------- 568

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                         L   +  +L ++EK
Sbjct: 569 ----------------------------------------------LITDQDEVLVITEK 582

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT + ++    R GKG++   +++ N  G L  +  V  ++ +++++D G +IR  
Sbjct: 583 GYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDTGVMIRTN 640

Query: 867 VNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAEST 909
           +  I    RAT GV +    +D ++V   +V    + E+  E E+ 
Sbjct: 641 LANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENETE 686


>gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli
          Length = 493

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 256/492 (52%), Positives = 341/492 (69%), Gaps = 9/492 (1%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI ++ LM
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVN 276
           E I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVN
Sbjct: 181 EHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  
Sbjct: 241 KARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVS 300

Query: 337 FSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN
Sbjct: 301 FGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALAN 360

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMY 448
           +D ++ +IR +P P  A+  L+   W   ++  +++   D +             DG  Y
Sbjct: 361 IDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYY 420

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           L+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V
Sbjct: 421 LTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELV 480

Query: 509 KDELDTPRRTRI 520
           +++    RRT I
Sbjct: 481 REQFGDKRRTEI 492


>gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 743

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/731 (32%), Positives = 383/731 (52%), Gaps = 58/731 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    
Sbjct: 4   DTSGHIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSG 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RY
Sbjct: 64  FKKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL+ +  D+VDFRP YDG  QEPVVL A +PN+L NG  GIAVGMAT+I
Sbjct: 124 TEARMTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+GE+    + +I +PD  +  LME + GPDFPTG  ++  R  +  AY TGRGS+ 
Sbjct: 184 PPHNVGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMR 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    +E+      Q+VVTEIPYQV K+ ++E+IA+L+ +K++  + D+RDES     R
Sbjct: 244 IRARWSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTT-DIR 302

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREE 367
           +V+E K RG   +V++  L+R T+L+S F++NM  L   +     +L  +L A++  R +
Sbjct: 303 LVLEPKSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHD 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+++ L     R  +L G      NLDEV+RIIR   +   A+  LM         
Sbjct: 363 VLQRRSRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDD---AKAGLMA-------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  L+E+Q  +IL +RL  L  L   +IR E  +L  E  + 
Sbjct: 412 ------------------TFSLTELQAESILNMRLRSLRRLEELEIRKEHAALTAERGDL 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +L S       I +E+ +++          RR+ +      +     + + RE + + 
Sbjct: 454 TALLDSEPLRWKKITEEVKAIRKAFGAGALGTRRSELAAPPRAIELSAIEAVEREPLTLI 513

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        +  +  G   +    ++ D         +   +  F++ G  +  
Sbjct: 514 LSAKGWV--------KTLKGHGIDPTTQKFKEGDGFRLAVECQSTDRLCVFATDGRAFTL 565

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP G     G+ +  ++ L+  E +  + P  E          + A+  G     +
Sbjct: 566 RAADLPRGRGD--GQPIRLLIELSNDEDLVAVFPVREGTRH------LLASSAGRGLVIR 617

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             D +   R+GK  + L    E   +    + + +++  +  + + FP++ +   A    
Sbjct: 618 DEDLVAEKRTGKQVLNLK-DAESARICLPVEGDHVVVLGQNRRMLVFPVAQLPEMA--RG 674

Query: 722 VGVRGISLAKG 732
           +GV      +G
Sbjct: 675 LGVALQKYKEG 685


>gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
 gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855]
          Length = 777

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 273/814 (33%), Positives = 409/814 (50%), Gaps = 76/814 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKCA 75
            ++ + +  +  YL YA++VI  RA+PD+RDGLKPV RRILF M   + +  +K++ K A
Sbjct: 5   ETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            + GE MGKYHPHG+ AIYDA+ RMAQ +SLR  L++G GNFGS+DGD  AA RYTE +L
Sbjct: 65  TVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           Q  A  +L+ L  +TVD+R N+DGS +EPVVL AR PN+LVNG  GIAVGMATNIP HNL
Sbjct: 125 QPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDI-DLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           GEVVD  + +I+ P++     + + I+GPDFPTG  IL  +  +   Y TG G+I +RG 
Sbjct: 185 GEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRGA 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                 +  + + ++  +PY V+K+ ++E+IA+ + E+ +  ++++RDES     R+V+E
Sbjct: 245 YR----TKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDES-TDDVRIVLE 299

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGILKAFVAFREE 367
           LKRG+  +  +  L+++T LQ  F VN+  L   +      P++  L  IL+ F+ FR +
Sbjct: 300 LKRGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLD 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RR +  L +   R H+L G       LDE + IIR S N   A + LM R       
Sbjct: 360 VVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHR------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L E QT AILE +L +L+ +  + IR+EL       +  
Sbjct: 413 -------------------FQLDEEQTDAILETQLYKLSQMEIEAIRDELGEKRARAEGI 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHL 545
             +L       GI+K EL  ++DE    RR+ +V    DME   ED IV ED+ V V+  
Sbjct: 454 RRLLDDEDARWGIVKDELQDIRDEYTDERRSTLVGPGADMEYTEEDYIVDEDVHVIVTRD 513

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+VKR                  +  RD D V      ST  +V FF++ G  Y  ++  
Sbjct: 514 GWVKRQGTYS---------DLDAIRTRDGDEVGWALAGSTRATVGFFTNYGTCYTTRITE 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPE---------------------DESSWN 644
           +P       G  +  + S + GE +  ++ F +                     D  + +
Sbjct: 565 IPST--TGYGDPVQKLFSFDDGEHVVGVVSFDDRALPDPVPAEPSEQGELFDPDDPDAPD 622

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLG 703
             YVV  +K G   R  L  +++ + S  +  M+L+  DE+  V     + +I L +  G
Sbjct: 623 QPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLEDGDEVARVHLARGDENICLASHDG 682

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + + FP+  + V+ G  + GVR I L   D+V+  A+   A           +    +  
Sbjct: 683 RALVFPVHQVSVYKG-PAKGVRAIRLEDNDRVLDFALSTRARDGLTVETNNGREEIVRTT 741

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                                       E+ L E
Sbjct: 742 KFDATNRGAKGTLVIKRGYFAEVFPEPVEVPLHE 775



 Score = 64.8 bits (156), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 81/267 (30%), Gaps = 45/267 (16%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           M + E++   +    V  T+ G V+R       Q   S   A++    DE+      +  
Sbjct: 493 MEYTEEDYIVDEDVHVIVTRDGWVKR-------QGTYSDLDAIRTRDGDEVGWALAGSTR 545

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   T  G C    I+ I    G      +  S   G+ V+ +               
Sbjct: 546 ATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV-------------- 591

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                       S D   +         E     +        + +++ +S+ G   R +
Sbjct: 592 ------------SFDDRALPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFT 639

Query: 814 SYDFR----ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              +      + R           ++ +   +  V     ++ I L S  G  +  PV++
Sbjct: 640 LDGYLEPSISTGR--------KYMRLEDGDEVARVHLARGDENICLASHDGRALVFPVHQ 691

Query: 870 IRIASRATKGVVIFSTAKDERVVSVER 896
           + +     KGV       ++RV+    
Sbjct: 692 VSVYKGPAKGVRAIRLEDNDRVLDFAL 718


>gi|15828844|ref|NP_326204.1| DNA topoisomerase IV subunit A [Mycoplasma pulmonis UAB CTIP]
 gi|14089787|emb|CAC13546.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma pulmonis]
          Length = 939

 Score =  578 bits (1490), Expect = e-162,   Method: Composition-based stats.
 Identities = 238/805 (29%), Positives = 396/805 (49%), Gaps = 38/805 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      E+  + + S S+   M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MNKKNSLEQEQINEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           M + +  +K + K ARI G+V+GKYHPHG+++IY+A+ RMAQDW + + LI+  GN GS+
Sbjct: 61  MDLKLWNDKPFKKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + ++ +L+ + K+ V F PN+D S +EP VL A  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGAR 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNLGE++D  +A I    + ++ L++ I+GPDFPTG VI G +GI  A
Sbjct: 181 GIAAGFATEMPPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGGVIHGLSGIVQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  GRG I +           D+ +I++T+IPY   K+ ++  I E++  ++I  I ++ 
Sbjct: 241 FKEGRGRISLTCKYEHINL-PDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVL 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D+SDR G  + I+L++ A+ + I+  L+  T LQ  ++ N +A+    P    L  +L  
Sbjct: 300 DQSDRDGISIAIKLEKKANHESIMKYLFSKTELQVFYNYNNIAIKNGSPTLLNLNELLDI 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   + + V+  ++ LNKAR R  V+ G        D+++  IR S +           
Sbjct: 360 YIEHLKTINVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASND----------- 408

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                 I+DLI +                S+ Q  AI ELRL RL+       +NE   L
Sbjct: 409 -GKKGVIEDLIRI-------------FAFSQRQATAIAELRLYRLSQTDFYLYQNEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDM 538
             +I +   IL+S + L   +   L  +K    TPR+T+I++     + + E+ +V E  
Sbjct: 455 IKQINDFEKILNSDNELKTYLVNILKKIKKTYPTPRKTQIIDEELKRNYDIEELVVDEKC 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V++S  GY+KRV    ++             +++ D ++ L   +T   +L FS  G  
Sbjct: 515 YVSLSQDGYLKRVSSKTFKTNDFA-----SFGLKENDNLSFLSKATTKDKLLIFSDHGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               ++++     ++ G  + + +  N  E+I  ++   E      + Y+   T+ G  +
Sbjct: 570 AIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNEFS---QDYYISLVTQKGLGK 626

Query: 659 RNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R  L+ F+   +S    A+ L   D ++ V     + +I+L T     V+F   A+    
Sbjct: 627 RVSLNKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSEDAL-PVI 685

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                G + I L++G++V +M+I    D                               +
Sbjct: 686 STKGQGNKMIQLSEGEKVSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRAAKGKRIS 745

Query: 778 DSSVEGNISEERCQELKLKEQFILT 802
           +    G           L  + IL 
Sbjct: 746 EELKLGYQKIVLAYNQNLHHKLILV 770



 Score = 64.8 bits (156), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 93/242 (38%), Gaps = 11/242 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  ++ G ++R     F     +   +  L   D +  +   T ++ +L+ +  G
Sbjct: 511 DEKCYVSLSQDGYLKRVSSKTF---KTNDFASFGLKENDNLSFLSKATTKDKLLIFSDHG 567

Query: 704 QCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                PI  I       S GV     +     +++I + +V     DY   +   K +  
Sbjct: 568 NYAIIPIYKIEEQKS-KSFGVHINDFVYFNSYEKIIYVLVVNEFSQDYYISLVTQKGLGK 626

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +  L        + + N  +++ +      +  K K+  IL  +     K +      + 
Sbjct: 627 RVSLNKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIILFTNFNNVVKFSE-DALPVI 685

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           +  G+G +   +S+  +   + A+      D +IL+++K  LI+VP +  +   RA KG 
Sbjct: 686 STKGQGNKMIQLSEGEK---VSAMSITKTTDNLILITNKNNLIKVPTSHFKFTPRAAKGK 742

Query: 881 VI 882
            I
Sbjct: 743 RI 744



 Score = 57.1 bits (136), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 7/177 (3%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNI 785
           L + D +  ++     D            +    ++    ++      ND    +    I
Sbjct: 542 LKENDNLSFLSKATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKI 601

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                     ++ +I  V++KG GKR S   F I+ R  K   A  +        LV V 
Sbjct: 602 IYVLVVNEFSQDYYISLVTQKGLGKRVSLNKFLIT-RQSKISNAITLKD---DDRLVDVR 657

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                  IIL ++   +++   + + + S   +G  +   ++ E+V ++   + ++ 
Sbjct: 658 VSKGKQNIILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEKVSAMSITKTTDN 714


>gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
 gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1]
          Length = 775

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 255/727 (35%), Positives = 391/727 (53%), Gaps = 37/727 (5%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S  ++  + + YL YA++ I+ RA+PD RDGLKPVHRRIL+ M ++ +  N  + K A+
Sbjct: 21  ISEPLSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGGFRKSAK 80

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           ISG+VMG YHPHG+AAIYDA+AR+AQD+ +R  L++GQGNFG++DGD PAA RYTE R+ 
Sbjct: 81  ISGDVMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARYTEARMT 140

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL+ L +D V+FR NYDG+ QEP VL A+ PN+L NG  GIAVGMATNIP HNL 
Sbjct: 141 AVAEALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNIPPHNLD 200

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           E++  C+ +I  PD   + L+  ++GPDFPTG  ++  R  +   Y TG+G   +R    
Sbjct: 201 ELIAACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFRVRATHE 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE     + QIVVTEIPYQV K+ ++EK+AEL++ K++  +AD+RDES     R+V+E +
Sbjct: 261 IEDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDESA-DDIRIVLEPR 319

Query: 316 RGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRT 373
                 DV++  LYR + L++ FS+NM  L +G  P+  +L  +L+AF+  R++V++RR+
Sbjct: 320 SKTVDPDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQDVLMRRS 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ + +   R  VL G  IA  NLD V+ IIR+  +P+ A              +D +  
Sbjct: 380 RHRMAQIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAA-------LMREDWGQDFVRA 432

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           + ++ Y     G   L+EVQ  AIL +RL  L  L   +++ E + L  E     D+L+ 
Sbjct: 433 MSEADYVSPKPGEGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGLEDLLAE 492

Query: 494 RSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
            S   G I +EL  V+ +  +      RRT+  E   + ++  E  I RE + +  S +G
Sbjct: 493 ESLQWGRIAEELREVRKKFGSRADGGARRTQFAEAGNIEEVSLEAMIEREPVTIVCSQMG 552

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +        +  RD D         T   +L   S G VY      L
Sbjct: 553 WI--------RAMKGHVDLSQEMKFRDGDGPRFAIHAETTDKLLILGSQGRVYTLGANGL 604

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L    +        +          + A+  G+       D +
Sbjct: 605 PGG--RGLGEPLRLMVDLPNEVQ------IVDLFVHHPGAKRLMASSAGDGFLVAEEDIL 656

Query: 667 QINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              RSGK  + +       +      +++ + +  +  + + FP++ +    GR   GVR
Sbjct: 657 AQTRSGKQVLNVKDGVTASVCRAVAPEDDHVAVVGENRKLLVFPLTELPEM-GRG-KGVR 714

Query: 726 GISLAKG 732
                 G
Sbjct: 715 LQKYKDG 721


>gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
 gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1]
          Length = 736

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 242/739 (32%), Positives = 382/739 (51%), Gaps = 61/739 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +     I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++   
Sbjct: 2   DTTAGHIEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + KCAR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA R
Sbjct: 62  GFKKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL   A  LL+ + +D+VDFRP YDG   EPVVL A +PN+L NG  GIAVGMAT+
Sbjct: 122 YTESRLTAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATS 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSI 248
           IP HN+GE+    +A+I  P      L+  + GPDFPTG  I   R  I  AY TGRGS 
Sbjct: 182 IPPHNVGEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR    +E+      QIVVTEIPYQV K+ ++E++A+L+ +K++  +AD+RDES     
Sbjct: 242 RIRSKWDVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTT-DI 300

Query: 309 RVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFRE 366
           R+V+E K RG    V++  L+R T L+S F +NM  L   +     +L  +L+A++  R 
Sbjct: 301 RLVLEPKSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRH 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           +V++RR+   L     R  +L G      NLDEV+RI+R   + ++A             
Sbjct: 361 DVLLRRSANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSA------------- 407

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E+Q  ++L +RL  L  L   +IRNE   L  E + 
Sbjct: 408 ----------------LIAAFDLTELQADSVLNMRLRSLRRLEEMEIRNEHARLSAEKQA 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDCIVRE--DMVV 540
             D+L +  +    I  E+  ++          RR+ + +  ++++ E  +  E   + V
Sbjct: 452 LHDLLENEGQRWKHIAGEIKDIQKTFGGGTLGKRRSLLADAPVEIDVEAALPVERDPLTV 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  R  G+    +  ++ D +       ++  +  F++ G  + 
Sbjct: 512 ILSQKGWI--------RTVRGHGQDPQALKFKEGDDLGMAVECHSNDRLCVFATDGRAFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +V  LP G     G+ L  ++ L+  E I T+ P  +         +  +T  G +   
Sbjct: 564 LRVADLPRGRGD--GQPLRLLIDLSNDEDIITMFPLDDARR----RLLASSTGRGMI--V 615

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             S      R+G+  + L  R+  L      + + +L+  +  + + FP+  +   A   
Sbjct: 616 AESAMTAEKRTGRQVLNLKDRESALIC-VPAEGDHVLVLGQNRRMLVFPLDQLPEMA--R 672

Query: 721 SVGVRGISLAKG---DQVI 736
            +GV       G   D V+
Sbjct: 673 GLGVILQKYKDGGLKDAVV 691


>gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
 gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597]
          Length = 769

 Score =  578 bits (1489), Expect = e-162,   Method: Composition-based stats.
 Identities = 262/742 (35%), Positives = 387/742 (52%), Gaps = 37/742 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I   +   +       ++  + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDLIDDPNMGGDTSAEP--LSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    ++ K ++ISG+VMG +HPHG+ AIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSAGGRFRKSSKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  +++ L ++ VDFR NYDG+  EPVVL A  PN+L NG  
Sbjct: 119 DGDNPAASRYTEARLTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKN 239
           GIAVGMATNIP HN+ E+ +  + +I  PD   + L+  + GPDFPTG  +   R  +  
Sbjct: 179 GIAVGMATNIPPHNIEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E     + QIVVTEIPYQV K+ ++EKIAEL++ KR+  +AD+
Sbjct: 239 AYRTGRGSFRLRAKWEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADI 298

Query: 300 RDESDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+++E +      DV++N L+R + L+  FS+NM   ++G  P+  +L  +
Sbjct: 299 RDESA-DDIRMILEPRSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV++RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P   +  L
Sbjct: 358 LRAFLDHRREVLLRRSRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDP---KAAL 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M   W+    +   +   D    IG D    LSEVQ  AIL +RL  L  L   ++  E 
Sbjct: 415 MAEDWSVKRGRAASE--ADYVSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRER 472

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--E 530
           ++L  E     D+L S       I  ++  V+           RRT I E     E   E
Sbjct: 473 DALMEERAGLEDLLESEDLQWVRISDQIREVRKTFGAKSEGGARRTLIEEAGEVEEVPLE 532

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V  S +G+V        RA +        +  +D D     F   T   +L
Sbjct: 533 AMIEREPITVVCSRMGWV--------RAMKGHIDLTQKLKFKDGDEGRFAFHAETTDRLL 584

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F + G  Y      LP G  +  G+ L  ++       I  I+             +V 
Sbjct: 585 VFGTNGRFYTVSASNLPGG--RGMGEPLRLMIDFPNEADIVDIL------IHKPGRKLVV 636

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G+       D +   RSGK  + +   D    V    Q + + +  +  + + FP+
Sbjct: 637 ASSAGDGFLVSEDDVLAQTRSGKQVLNVR-GDATALVCKPVQGDTVAVVGENRKVLVFPV 695

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A     GVR      G
Sbjct: 696 EDLPEMA--RGKGVRLQKYKDG 715


>gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 898

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/740 (32%), Positives = 403/740 (54%), Gaps = 44/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H EK +     IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A++ LDEV+++IR S N   A   L+            
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLV------------ 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q  AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 405 --------------ITFKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L   K +    R++++ + +   D++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNSLVLDNEIISRLEEAKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +               S    +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVI-----DNNILNKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKIST 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              + +G  + ++ +    E I   +   E     +  +++  +K+G ++R ++SD   +
Sbjct: 566 SKWKEQGVHINSVATTQPNETIINALVIKEF--INSTQHLLLVSKNGLIKRTQISDLETK 623

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I       MK+   D ++      ++ +   + TK G  VR+ I  I       S GV+ 
Sbjct: 624 IFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDI-PVQSTISKGVKA 682

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L K D +IS   + +   
Sbjct: 683 ANL-KDDYIISALSLQNNKD 701



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRA 829
           I S+      E  I+    +E     Q +L VS+ G  KRT   D      N      ++
Sbjct: 575 INSVATTQPNETIINALVIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFN------KS 628

Query: 830 TDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             + KI++  +LV    ++       +++  G  +R  + +I + S  +KGV   +  KD
Sbjct: 629 FKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANL-KD 687

Query: 889 ERVVSV 894
           + ++S 
Sbjct: 688 DYIISA 693



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 94/251 (37%), Gaps = 14/251 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ +K G ++    +     N++   +      D  +S   C+  + ++L +        
Sbjct: 502 LWISKDGYIKVIDNNIL---NKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSI 558

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I   +     GV      +    + +I+  ++          +   K+   +R  I
Sbjct: 559 PLYKI-STSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLLVSKNGLIKRTQI 617

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           S    +I +         +       +L   K  +   +++ G+  R +  D  + +   
Sbjct: 618 SDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTIS 677

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF- 883
           KG++A ++    +   +++   + +N  +++ ++K    R+  N I I  R  KG+ I  
Sbjct: 678 KGVKAANL----KDDYIISALSLQNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILV 733

Query: 884 -STAKDERVVS 893
                 E+++ 
Sbjct: 734 EKKKNKEQIIF 744


>gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
 gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC
           str. PG1]
          Length = 898

 Score =  577 bits (1488), Expect = e-162,   Method: Composition-based stats.
 Identities = 237/740 (32%), Positives = 403/740 (54%), Gaps = 44/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H EK +     IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A++ LDEV+++IR S N   A   L+            
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLV------------ 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q  AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 405 --------------ITFKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L   K +    R++++ + +   D++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNSLVLDNEIISRLEEAKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +               S    +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVI-----DNNILNKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKIST 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              + +G  + ++ +    E I   +   E     +  +++  +K+G ++R ++SD   +
Sbjct: 566 SKWKEQGVHINSVATTQPNETIINALVIKEF--INSTQHLLLVSKNGLIKRTQISDLETK 623

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I       MK+   D ++      ++ +   + TK G  VR+ I  I       S GV+ 
Sbjct: 624 IFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDI-PVQSTISKGVKA 682

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L K D +IS   + +   
Sbjct: 683 ANL-KDDYIISALSLQNNKD 701



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 10/126 (7%)

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRA 829
           I S+      E  I+    +E     Q +L VS+ G  KRT   D      N      ++
Sbjct: 575 INSVATTQPNETIINALVIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFN------KS 628

Query: 830 TDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             + KI++  +LV    ++       +++  G  +R  + +I + S  +KGV   +  KD
Sbjct: 629 FKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANL-KD 687

Query: 889 ERVVSV 894
           + ++S 
Sbjct: 688 DYIISA 693



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 94/251 (37%), Gaps = 14/251 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ +K G ++    +     N++   +      D  +S   C+  + ++L +        
Sbjct: 502 LWISKDGYIKVIDNNIL---NKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSI 558

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I   +     GV      +    + +I+  ++          +   K+   +R  I
Sbjct: 559 PLYKI-STSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLLVSKNGLIKRTQI 617

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           S    +I +         +       +L   K  +   +++ G+  R +  D  + +   
Sbjct: 618 SDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTIS 677

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF- 883
           KG++A ++    +   +++   + +N  +++ ++K    R+  N I I  R  KG+ I  
Sbjct: 678 KGVKAANL----KDDYIISALSLQNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILV 733

Query: 884 -STAKDERVVS 893
                 E+++ 
Sbjct: 734 EKKKNKEQIIF 744


>gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
          Length = 898

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 238/740 (32%), Positives = 404/740 (54%), Gaps = 44/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  +++I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDASISIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H EK +     IVV EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQEKNN-----IVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A++ LDEV+++IR S N   A   L++           
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALSILDEVIKVIRKSENRIDAINNLVK----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q+ AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L  VK +    R++++ + + D  ++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +               S    +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVI-----DNNILNKNELSSFGKKPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIAN 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + ++ +    E I       E     +  +++  +K+G ++R ++SD    
Sbjct: 566 SKWKDQGVHINSVATTQPNETIINAFIIKEF--INSTQHLLLVSKNGLIKRTQISDLETK 623

Query: 669 -NRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                   MK+   D ++      ++ +   + TK G  VR+ I  I       S GV+ 
Sbjct: 624 IFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDI-PVQSTISKGVKA 682

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L K D +IS   + +   
Sbjct: 683 ANL-KDDYIISALSLDNNKD 701



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNI 785
              D  IS  +  + D           +     ++ +   ++    I S+      E  I
Sbjct: 529 KPNDMWISQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETII 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRATDVSKINEIGALVA 843
           +    +E     Q +L VS+ G  KRT   D      N      ++  + KI++  +LV 
Sbjct: 589 NAFIIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFN------KSFKIMKISDDDSLVY 642

Query: 844 VFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              ++       +++  G  +R  + +I + S  +KGV   +  KD+ ++S 
Sbjct: 643 ADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANL-KDDYIISA 693



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 95/251 (37%), Gaps = 14/251 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ +K G ++    +     N++   +      D  +S   C+  + ++L +        
Sbjct: 502 LWISKDGYIKVIDNNIL---NKNELSSFGKKPNDMWISQGVCSNLDHLILVSDQANYYSI 558

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I   +     GV      +    + +I+  I+          +   K+   +R  I
Sbjct: 559 PLYKI-ANSKWKDQGVHINSVATTQPNETIINAFIIKEFINSTQHLLLVSKNGLIKRTQI 617

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           S    +I +         +       +L   K  +   +++ G+  R +  D  + +   
Sbjct: 618 SDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTIS 677

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF- 883
           KG++A ++    +   +++   +++N  +++ ++K    R+  N I I  R  KG+ I  
Sbjct: 678 KGVKAANL----KDDYIISALSLDNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILV 733

Query: 884 -STAKDERVVS 893
                 E+V+ 
Sbjct: 734 EKKKNKEQVIF 744


>gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 899

 Score =  577 bits (1487), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/797 (30%), Positives = 419/797 (52%), Gaps = 46/797 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL KDTV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H EK +     IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNK   R  ++ GL  A++ LDEV+++IR S N   A   L+            
Sbjct: 357 KRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLV------------ 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          +   +  Q+ AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 405 --------------ISFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+    L   I   L  VK +    R++++ + +   D++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNDNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +               S    +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVI-----DNNILNKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKIST 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              + +G  + ++ +    E I   +   E     +  +++  TK+G ++R ++SD   +
Sbjct: 566 SKWKEQGVHINSVATTQPNETIINALVIKEF--INSTQHLLLVTKNGLIKRTQISDLETK 623

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I       MK+   D ++      ++ +   + TK G  VR+ I  I       S GV+ 
Sbjct: 624 IFNKSFKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDI-PIQSTISKGVKA 682

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +L     + ++++  + D          K +      I    ++   +  +        
Sbjct: 683 ANLKDDQIISALSLQTNKDIIIFTNKNNYKKIDQNLIPIYIRPKKGIRILVEKKKNK--- 739

Query: 787 EERCQELKLKEQFILTV 803
           EE      + ++ IL++
Sbjct: 740 EEVIFSFAINKEMILSI 756



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRA 829
           I S+      E  I+    +E     Q +L V++ G  KRT   D      N      ++
Sbjct: 575 INSVATTQPNETIINALVIKEFINSTQHLLLVTKNGLIKRTQISDLETKIFN------KS 628

Query: 830 TDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             + KI++  +LV    ++       +V+  G  +R  + +I I S  +KGV   +  KD
Sbjct: 629 FKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQSTISKGVKAANL-KD 687

Query: 889 ERVVSV 894
           ++++S 
Sbjct: 688 DQIISA 693



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 96/258 (37%), Gaps = 15/258 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ +K G ++    +     N++   +      D  +S   C+  + ++L +        
Sbjct: 502 LWISKDGYIKVIDNNIL---NKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSI 558

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I   +     GV      +    + +I+  ++          +   K+   +R  I
Sbjct: 559 PLYKI-STSKWKEQGVHINSVATTQPNETIINALVIKEFINSTQHLLLVTKNGLIKRTQI 617

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           S    +I +         +       +L   K  +   V++ G+  R +  D  I +   
Sbjct: 618 SDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIVTKNGYAVRYNIEDIPIQSTIS 677

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF- 883
           KG++A ++    +   +++   +  N  II+ ++K    ++  N I I  R  KG+ I  
Sbjct: 678 KGVKAANL----KDDQIISALSLQTNKDIIIFTNKNNYKKIDQNLIPIYIRPKKGIRILV 733

Query: 884 --STAKDERVVSVERIRE 899
                K+E + S    +E
Sbjct: 734 EKKKNKEEVIFSFAINKE 751


>gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
 gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5]
          Length = 751

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 244/811 (30%), Positives = 392/811 (48%), Gaps = 72/811 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  + ++   +  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKTLIPPEPQD---VQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ +  + K A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPSSPFKKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  LL+ L +D V+FRP+YDGS +EP VL   +PN+L NG  
Sbjct: 118 DGDNPAAMRYTESRLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I  P      L+  ++GPDFPTG + + G+  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R   H E  +     IVVTEIP+ V K+ ++E+IAEL+ EK++  + D+
Sbjct: 238 AYNTGRGAFRVRAKWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K +    +V++  L++ T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DIRIVIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V+VRR+ +  N+   R  VL G  IA  NLD+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLVRRSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+++Q  +IL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLIRTFKLTDLQADSILNMRLRNLRKLEEMEIRGED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    +L+S       + +++  V+D          RRT+            +
Sbjct: 448 KNLRTELKGIKAVLASEEEQWKKVSEQVKKVRDLFGPKTPLGKRRTQFANAPEHDLATLE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G+V        R  +   +  S +  + +D +   F   T + +
Sbjct: 508 EAFVEREPITVVVSDKGWV--------RTLKGHVEDLSNLTFKTDDRLGISFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L   + G  Y     +LP G  +  G  + + + L                 +      +
Sbjct: 560 LLLGTHGRFYTLDAQKLPGG--RGHGDPIRSFIDLEGDA------NIVSLFVNTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  M +   +E ++     + + + +  +  + + FP
Sbjct: 612 IASHDGQGFVVNEDDCVGNTRKGKQVMNVTMPNE-VAAIATVEGDTVAVIGENRKMLIFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +   A     GVR      G           +D         +    +  R  S   
Sbjct: 671 LEQVPEMA--RGRGVRLQRYKDG---------GLSDVTTFTAKEGLTWRDSAGREFSASW 719

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +E++  + + +  G +  +   +     + I
Sbjct: 720 KELSDWRGNRADAGRLPPKGFPKSNKFGKTI 750


>gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
 gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50]
          Length = 898

 Score =  577 bits (1486), Expect = e-162,   Method: Composition-based stats.
 Identities = 236/740 (31%), Positives = 404/740 (54%), Gaps = 44/740 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSKIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  FKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGAVI  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAVIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H EK +     IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL   ++ LDE++++IR S N   A   L+            
Sbjct: 357 KRTQFNLNKANLRLEIVNGLIKTLSILDEIIKVIRKSENRLDAINNLV------------ 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q  AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 405 --------------ITFKFTTNQATAIVDMRLYRLTSTDVNKLLLEKTELIEKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L  VK +    R++++ + +   D++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNSLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +               S    +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVI-----DNNILNKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISS 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              + +G  + ++ +    E I   +   E     +  +++  +K+G ++R ++SD   +
Sbjct: 566 SKWKDQGVHINSVATTQPNETIINALVIKEF--INSTQHLLLVSKNGLIKRTQISDLETK 623

Query: 668 INRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I       MK+   D ++  +   ++ +   + TK G  VR+ I  I       S GV+ 
Sbjct: 624 IFNKSFKIMKISDDDSLVYADLVSSKTSYCCIVTKNGYAVRYNIEDI-PIQSTISKGVKA 682

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L K D +IS   + +   
Sbjct: 683 ANL-KDDYIISALSLQNNKD 701



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 14/172 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNI 785
              D  IS  +  + D           +     ++ S   ++    I S+      E  I
Sbjct: 529 KPNDMWISQGVCSNLDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVATTQPNETII 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRATDVSKINEIGALVA 843
           +    +E     Q +L VS+ G  KRT   D      N      ++  + KI++  +LV 
Sbjct: 589 NALVIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFN------KSFKIMKISDDDSLVY 642

Query: 844 VFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              V+       +V+  G  +R  + +I I S  +KGV   +  KD+ ++S 
Sbjct: 643 ADLVSSKTSYCCIVTKNGYAVRYNIEDIPIQSTISKGVKAANL-KDDYIISA 693



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 95/251 (37%), Gaps = 14/251 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ +K G ++    +     N++   +      D  +S   C+  + ++L +        
Sbjct: 502 LWISKDGYIKVIDNNIL---NKNELSSFGKKPNDMWISQGVCSNLDHLILISDQANYYSI 558

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I     ++  GV      +    + +I+  ++          +   K+   +R  I
Sbjct: 559 PLYKISSSKWKD-QGVHINSVATTQPNETIINALVIKEFINSTQHLLLVSKNGLIKRTQI 617

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           S    +I +         +       +L   K  +   V++ G+  R +  D  I +   
Sbjct: 618 SDLETKIFNKSFKIMKISDDDSLVYADLVSSKTSYCCIVTKNGYAVRYNIEDIPIQSTIS 677

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF- 883
           KG++A ++    +   +++   + +N  +++ ++K    R+  N I I  R  KG+ I  
Sbjct: 678 KGVKAANL----KDDYIISALSLQNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILV 733

Query: 884 -STAKDERVVS 893
                 E+V+ 
Sbjct: 734 EKKKNKEQVIF 744


>gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
 gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B]
          Length = 782

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/741 (34%), Positives = 387/741 (52%), Gaps = 41/741 (5%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +      E    G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDIVDDPTTPEMPANGELREPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMNRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ LG+D VDFR NYDG  QEP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-I 237
             GIAVGMATNIP HN+ E++D C+ +I  P+   D L++ + GPDFPTG  I+     I
Sbjct: 181 SSGIAVGMATNIPPHNISELIDACIHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    IE     + Q+VVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 241 AQAYRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLI 355
           D+RDES     R+++E K +    +V++  +YR + L+  FS+NM   ++G  P+  ++ 
Sbjct: 301 DVRDESAE-DIRIILEPKSKNVDPEVLMGLMYRNSDLEVRFSLNMNVLIDGVTPKVCSMK 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-R 414
            +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A  
Sbjct: 360 EVLRAFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDDDPKAALM 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           RE   R               ++ Y   + G   LSEVQ  AIL +RL  L  L   ++ 
Sbjct: 420 RENWDREHP--------RAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELT 471

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED 529
            E ++L  E     ++L S       I ++L   K +         RRT+  E     + 
Sbjct: 472 RERDALREERAGLAELLDSEDLQWKKITEQLRETKKQFGKDYEGGSRRTQFAEAGEVEDV 531

Query: 530 --EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E  I RE + V  S +G++        RA          +  +D D    +F   T  
Sbjct: 532 PLEAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTD 583

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F S G  Y      LP G  +  G+ L  ++ L             +         
Sbjct: 584 RLLVFGSNGRFYTLSAANLPGG--RGMGEPLRLMVDLPNEVE------IVDLFIHNPEGR 635

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ A+  GN       + +   R GK  + +   DE   +      + + + ++ G+ + 
Sbjct: 636 LLVASDAGNGFVCAEKEIVAQTRGGKQVLNVK-DDERAKICIPVSGDHVAVVSENGKFLV 694

Query: 708 FPISAIRVFAGRNSVGVRGIS 728
           F I  +         GVR   
Sbjct: 695 FSIEEMPELT--RGKGVRLQK 713



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 72/228 (31%), Gaps = 21/228 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    D+   +R  + A   +  D  L      +   ++  +++G         IR   
Sbjct: 506 KKQFGKDYEGGSRRTQFAEAGEVEDVPLEAMIDREPITVVC-SQMGW--------IRAMT 556

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R +    GD       + HA+      +             +           
Sbjct: 557 GHIDL-NRELKFKDGD---GPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPL 612

Query: 778 DSSVEGNISEERCQ-ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              V+     E     +   E  +L  S+ G G   +  +     R GK +      +  
Sbjct: 613 RLMVDLPNEVEIVDLFIHNPEGRLLVASDAGNGFVCAEKEIVAQTRGGKQVLNVKDDERA 672

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +I       PV+  D + +VS+ G  +   + E+   +R  KGV +  
Sbjct: 673 KI-----CIPVS-GDHVAVVSENGKFLVFSIEEMPELTR-GKGVRLQK 713


>gi|302866556|ref|YP_003835193.1| DNA topoisomerase [Micromonospora aurantiaca ATCC 27029]
 gi|302569415|gb|ADL45617.1| DNA topoisomerase (ATP-hydrolyzing) [Micromonospora aurantiaca ATCC
           27029]
          Length = 829

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 278/854 (32%), Positives = 400/854 (46%), Gaps = 104/854 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +  +++ ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M 
Sbjct: 9   AKADLAAFDQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMH 68

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           + G   ++ +VK ARI G+VMGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D
Sbjct: 69  EQGHRPDRGHVKSARIVGDVMGKYHPHGDTAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD 128

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE R+ + A  L  +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  G
Sbjct: 129 -DGPAAARYTEARMSREAMLLTGELGEDTVDVEPNYDGSLTQPTVLPAAFPNLLVNGASG 187

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY
Sbjct: 188 IAVGMATNMIPHNLGEVVQAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAY 247

Query: 242 ATGRGSIVIRGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIAD 298
            TGRG + +RG       + S  R+ I VTE+PY V    ++  I   V + KR+  IAD
Sbjct: 248 ETGRGVVRMRGRVEIGPLEGSRGRQAITVTELPYGVGAEKVIAAITNEVNKTKRLTGIAD 307

Query: 299 LRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++D +DR  G R+V+E K G +   +L  LYR T L+  F VN + L   +P    L  +
Sbjct: 308 VKDLTDRENGTRLVVECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKEL 367

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+A R EVV RR+ Y   K  +R H++ GL IA+ ++D VV++IR S + + A+  L
Sbjct: 368 LDVFLAHRYEVVTRRSSYRKRKREERLHLVDGLLIALLDIDRVVKLIRASEDAQAAKDGL 427

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           MQR                            LSE+Q   IL+  L RLT   R ++  E 
Sbjct: 428 MQR--------------------------FKLSEIQATYILDTPLRRLTKYDRLELEAEQ 461

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV--- 534
             L  EI E   IL     L  ++  EL +V  +   PRRT +V+G L       +    
Sbjct: 462 EKLRGEIAELSKILDDEKVLRKVVSDELAAVVKQFGAPRRTTLVDGDLKEVLAASVPAGP 521

Query: 535 ----REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                +   V +S  G V R             + R        D V  +   +    VL
Sbjct: 522 LEVADDPCQVILSATGLVARTAAE----SEEAAEARRRSGRVKHDAVRAIVHSTARGRVL 577

Query: 591 FFSSLGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWN 644
             +S G  +K  V  LP+   Q        G +   ++ L  GE +  + P     S+  
Sbjct: 578 LVTSAGRAFKIDVLPLPVLPEQSGTVSLRGGMSAAELVPLEPGETVVGLAPLG--PSAQG 635

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLG 703
           +  +   T+ G V+       +         + L   DE++           +   +   
Sbjct: 636 SPGLALGTRAGVVKVCAPDWPV--RSDEFEVISLRDGDEVIGATWLTDGAETLAFVSSEA 693

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
             +RF  S +R   G    G+ GI+L  G + +    +   D+ + E             
Sbjct: 694 SLLRFAASVVRP-QGLKGGGMAGINLPAGARAVFFGAIRTDDSKHGEP------------ 740

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNR 822
                                                + V+  G   K T    +    R
Sbjct: 741 -------------------------------------MVVTSTGATVKVTPFKAYPAKGR 763

Query: 823 SGKGIRATDVSKIN 836
           +  G+RA    K  
Sbjct: 764 ATGGVRAQRFLKGE 777



 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 22/217 (10%)

Query: 696 ILLTTKLGQCVRF---PISAIRVFAGRNS-VGVRGIS------LAKGDQVISMAIVLHAD 745
           +LL T  G+  +    P+  +   +G  S  G  G+S      L  G+ V+ +A +    
Sbjct: 576 VLLVTSAGRAFKIDVLPLPVLPEQSGTVSLRG--GMSAAELVPLEPGETVVGLAPLGP-- 631

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           +        +   +   ++ + D    +      S+           L    + +  VS 
Sbjct: 632 SAQGSPGLALGTRAGVVKVCAPDWPVRSDEFEVISLRDGDEVIGATWLTDGAETLAFVSS 691

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGT 861
           +    R ++   R     G G+   ++         V    +  +D    + ++V+  G 
Sbjct: 692 EASLLRFAASVVRPQGLKGGGMAGINLPAGARA---VFFGAIRTDDSKHGEPMVVTSTGA 748

Query: 862 LIR-VPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            ++  P        RAT GV      K E  +SV  I
Sbjct: 749 TVKVTPFKAYPAKGRATGGVRAQRFLKGELELSVAWI 785


>gi|291563504|emb|CBL42320.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SS3/4]
          Length = 748

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 249/733 (33%), Positives = 392/733 (53%), Gaps = 34/733 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ ++ +K + 
Sbjct: 2   SEKILRTEYSEEMQKSYLDYSMSVITSRAIPDARDGLKPVQRRVLYDMSELHLDHDKPHR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IY+ L  ++QD+   + L++G GNFGS++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGAAAMRYTE 121

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL+K A  + L DL K TVDF  NYD + +EP VL  R PN+LVNG  GIAVGM+T+IP
Sbjct: 122 ARLKKFAEEVYLKDLDK-TVDFVSNYDETEKEPEVLPVRVPNLLVNGAEGIAVGMSTSIP 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+D   A IDN  + ++ LM+ + GPDFPTG +I  +  +   Y TG G I +R
Sbjct: 181 PHNLGEVIDAVKAYIDNRLLTVEELMQYMPGPDFPTGGIIANKGDLLQIYETGAGKIRLR 240

Query: 252 GVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIA---ELVREKRIVDIADLRDESDRQ 306
           G   +E  +   DR+++V+TEIPY +  A + + +    +LV  +++ D+ D+ ++S ++
Sbjct: 241 GRIEVELGRRKADRDKLVITEIPYTMIGAGINKFLMDVADLVETRKLTDVVDISNQSSKE 300

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+ELK+ A  + I   LY+ T L+  + VNM+A++  +PE   L  IL  F+ F+ 
Sbjct: 301 GIRIVLELKKDADVNRIKAILYKKTKLEDTYGVNMLAIDEGRPETMNLKQILNTFLEFQY 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             + ++   LL K  ++  V  GL  A   +D ++ ++R S N + A+  LM  +     
Sbjct: 361 RNMTKKYNVLLQKEMEKKEVQEGLIEACDVIDLIIAVLRGSKNMKDAKECLMTGNTE--- 417

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                 +             ++ +E Q  AILE+RL +L GL    ++        +I+E
Sbjct: 418 -----KIKFRVPGFEADAKNLHFTERQATAILEMRLYKLIGLEILALQKAYKETLRKIRE 472

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              ILS++  +  +IK++L S+K E   PRRT I +G   +  E     ++++  +   G
Sbjct: 473 YKHILSNQKNMDVVIKEDLDSIKAEFAEPRRTLIEDGEEMVYVEAKEEAKEVIFVMDRFG 532

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K +  S+Y   +             +     +  V T   +  FS  G +Y+ KV   
Sbjct: 533 YCKTMDRSIYERNQET----------VDSENVWVLPVMTDDKLCMFSDTGNMYQVKVAEF 582

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G  + N+   +        + F    S +     +FAT    V+     +FI
Sbjct: 583 PTLKMKDKGIPIENVSKFDGKTET---ILFMLPASGFTGKKFLFATAQAAVKIVPGEEFI 639

Query: 667 QINRSGKIAMKLDSRDEILSVE----TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             N    +A KL   D++  +           D++L T  G  ++F +  I     +NS 
Sbjct: 640 TAN-KTVVATKLAGEDKLTEIREIGTEIDGTRDVVLQTVDGMFLKFQLEEIPELK-KNSR 697

Query: 723 GVRGISLAKGDQV 735
           GVRGI L K D +
Sbjct: 698 GVRGIRLEKEDTL 710



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 73/216 (33%), Gaps = 13/216 (6%)

Query: 678 LDSRDEILSVETCTQENDILLTT-KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++  +E++ VE   +  +++    + G C        R    RN   V     ++   V+
Sbjct: 506 IEDGEEMVYVEAKEEAKEVIFVMDRFGYCKTMD----RSIYERNQETV----DSENVWVL 557

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            +          D    Y   ++    L   D        +    +              
Sbjct: 558 PVMTDDKLCMFSDTGNMYQVKVAEFPTLKMKDKGIPIENVSKFDGKTETILFMLPASGFT 617

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV-FPVNDNDQIIL 855
            +  L  + +   K     +F  +N   K + AT ++  +++  +  +   ++    ++L
Sbjct: 618 GKKFLFATAQAAVKIVPGEEFITAN---KTVVATKLAGEDKLTEIREIGTEIDGTRDVVL 674

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +  G  ++  + EI    + ++GV      K++ +
Sbjct: 675 QTVDGMFLKFQLEEIPELKKNSRGVRGIRLEKEDTL 710


>gi|315651451|ref|ZP_07904474.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
 gi|315486271|gb|EFU76630.1| DNA gyrase subunit A [Eubacterium saburreum DSM 3986]
          Length = 745

 Score =  576 bits (1485), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/748 (32%), Positives = 398/748 (53%), Gaps = 32/748 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  ++ + K
Sbjct: 3   EKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELKIFSDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + LI+G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKSMALIDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L + A  + L DL K TV+F  NYD + +EP VL  R PN+L+NG  GIAVGM+T+IPT
Sbjct: 123 KLARFAEEVYLKDLDK-TVEFVSNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPT 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV D C+A I N DID + L+EI+ GPDFPTG +I  +  + + Y+TG G + +RG
Sbjct: 182 HNLSEVCDTCIAYIKNRDIDTEKLLEILHGPDFPTGGIIANKRDLLDIYSTGNGKLKLRG 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQ---VNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
              +E  +   D+++++++EIPY         +L  +A LV  K++ D+ D+ ++SD+ G
Sbjct: 242 KIEVELGRRKSDKDKLIISEIPYTMIGTGINKLLVDVANLVETKKLSDVVDISNQSDKNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + I N LY+ T L+  F VNM+A+   +PE  +L  ILK ++ F+ +
Sbjct: 302 TRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIVEGRPEILSLRDILKNYIEFQYK 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  ++   LLNK  ++  +  GL  AV  +D ++ I+R S N   A++ L          
Sbjct: 362 ITTKKYNILLNKELEKKEIQEGLIRAVDVIDLIIAILRGSKNLAQAKKCLTSGDTTG--- 418

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                +             +  ++ Q +A+L++RL +L GL  + +  +       I E 
Sbjct: 419 -----ITFKVKSLEKDAKKLSFTDKQAQAVLDMRLYKLIGLEIEALLKDNEITLKNIAEY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL +   +  +  ++L  +K E   PR+T I +    + +E+ +  E+++  +   GY
Sbjct: 474 KNILKNHKNMDKLFIKDLEKIKKEFAVPRKTYIEDAKEAVYEEEVLPSEEVIFVMDRFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  + +                 E     +F V     +  FS+ G +YK KV  L 
Sbjct: 534 CKILDRNTFDKN----------AENIETENKYVFPVMNTDRICIFSNKGILYKLKVTDLQ 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           I   + +G  + N   L + +     +     E +    Y++  TK G V++    +F  
Sbjct: 584 ISKLKDKGTPVDN---LTKFDSSNENILLAVSEDNIQGSYILMITKKGYVKKVSFEEFKT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N    ++ KL + D ++ V   +     DI + +     +RF IS +  F  +N+ G +
Sbjct: 641 -NNKQVVSTKLTNDDVLVGVNLLSAGINTDIFVVSDANYILRFDISEVNEFK-KNTRGEK 698

Query: 726 GISLAKGDQVISMAIVLHADADYDERIC 753
            ++L   + V +M ++            
Sbjct: 699 AMTLGYNEFVENMYLLSDTGIAEVNGKE 726



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 65/159 (40%), Gaps = 8/159 (5%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            ++ I Y   ++  +     D                       E  ++  +IL +++KG
Sbjct: 569 SNKGILYKLKVTDLQISKLKDKGTPVDNLTKFDSSNENILLAVSEDNIQGSYILMITKKG 628

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV--FPVNDNDQIILVSDKGTLIRV 865
           + K+ S  +F+ +N   K + +T ++       LV V       N  I +VSD   ++R 
Sbjct: 629 YVKKVSFEEFKTNN---KQVVSTKLT---NDDVLVGVNLLSAGINTDIFVVSDANYILRF 682

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            ++E+    + T+G    +   +E V ++  + ++ I +
Sbjct: 683 DISEVNEFKKNTRGEKAMTLGYNEFVENMYLLSDTGIAE 721


>gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
 gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille]
          Length = 771

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 255/809 (31%), Positives = 383/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+   +   E    G  ++++T   + +YL YAI+V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MTDQANLFDQEAPADGGEALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+GQGNFGS
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++   TVDF+PNYDGS +EP +L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT IP+HNL EV    VA+I NP +  + LM I+ GPDFP G   I   T I 
Sbjct: 181 SGIAVGMATEIPSHNLHEVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y++GRGS+ +R    IE  +  + Q VVTE+P+  +   +LE+I EL   K  +    
Sbjct: 241 DIYSSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKS 300

Query: 299 ------------------LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFS 338
                             +RDES R    R+V E K +        N L  +TSL++  S
Sbjct: 301 LSPEQLALKQTVLSMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVS 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P + +L  IL+ ++ FR   + RR+++ L K  DR H+L G    + N+
Sbjct: 361 INLVMIGGDGRPRQKSLGDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V++IIR S  P+ A                                   LSE Q   I
Sbjct: 421 DKVIKIIRESDEPKPA-----------------------------LMDAFRLSERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+ + + +    RR
Sbjct: 452 LEIRLRQLARLETIKIQQELAELRNEKTTLQDLLDNPSSMKRLVIKEIEADEKQFGDARR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I         E  ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 TLIE-VAEKASVETKVIDEPVTVVISQKGWV--------RARTGHGHDAAQFTFKAGDTL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            + F   T  S+L F S G +Y   V  LP              + +     + +     
Sbjct: 563 YNTFECRTVDSLLVFGSNGRIYSVPVSALPGARGDG--------VPITTLVELASGSRIL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDI 696
              +   ++ ++ A+  G     K  D +   R GK  + LD  DE L         + I
Sbjct: 615 HYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDEPLAPCPVTAGASAI 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              ++ G+ + F I  I+        GV  + L K +++++   +              K
Sbjct: 675 ACLSEKGRLLVFGIDEIKSLTA-GGRGVILMDLEKNEKLLAAQAISQRGVIVSGAGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                              +   ++E  I
Sbjct: 734 AQEVLLSASGLAPHIGKRARKGKALESKI 762



 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ- 852
              +  +L  S  G+G    S D     R GK          ++    +A  PV      
Sbjct: 619 GPADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITL-----DDGDEPLAPCPVTAGASA 673

Query: 853 IILVSDKGTLIRVPVNEIRIA---SRATKGVVIFSTAKDERVVSVERIR 898
           I  +S+KG L+   ++EI+      R   GV++    K+E++++ + I 
Sbjct: 674 IACLSEKGRLLVFGIDEIKSLTAGGR---GVILMDLEKNEKLLAAQAIS 719


>gi|300173092|ref|YP_003772258.1| DNA topoisomerase IV subunit A [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887471|emb|CBL91439.1| DNA topoisomerase IV, A subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 812

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 258/883 (29%), Positives = 423/883 (47%), Gaps = 96/883 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             IT +S+   M   +  Y+  +I  RA+PD+RDGLKPV RRILF M Q G  ++  Y K
Sbjct: 3   DRITELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMDQDGNTFDHPYRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G VMG +HPHG+++IY+A+ R++Q+W +R  LI+  GN GSVD DP AA RYTE 
Sbjct: 63  SAKSVGNVMGNFHPHGDSSIYEAMVRLSQNWKVREPLIDMNGNNGSVDNDPAAAMRYTEA 122

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K A  ++ DLG++TVD   N+D +  EP VL +R  ++ +NG  GI+ G AT IP H
Sbjct: 123 RLSKIAGEMMTDLGQETVDMVLNFDDTTYEPTVLPSRVLSLFINGATGISAGYATEIPPH 182

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL E+      ++D+P+  L ALM  ++GPDFPTG +I G  GIK AY TGRG IV+R  
Sbjct: 183 NLKEINGALTYLLDHPEAPLSALMRYVKGPDFPTGGIIQGLDGIKKAYKTGRGKIVVRAK 242

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + I +  G +++I +TE+PY+V K+ ++ KI  +   K +  I+++RDESDR+G  +VIE
Sbjct: 243 TVISEIKGGKKKIEITELPYEVVKSNLVAKIDGIRLNKEVAGISEVRDESDREGMSIVIE 302

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +  +A  IL  L++ T LQ  ++ NMVA++  +P   +L   L+AF+ FR+EVV++R+
Sbjct: 303 LNKDVNAAGILTYLFKKTDLQIYYNFNMVAIHDQRPVHVSLKQGLEAFLNFRKEVVLKRS 362

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L KA+ R H++ GL   ++ LDEVV  IR S N + A + L+               
Sbjct: 363 AYELAKAQARQHIVEGLIRMLSILDEVVATIRASKNRKDATQNLI--------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   ++ Q  AI+ L+L RLT      +  E  +L  +I     I++ 
Sbjct: 408 -----------DSYQFTQPQAEAIVTLQLYRLTNTDVTQLEEEFATLAAKIVRLNLIINE 456

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRV 551
            S L  +I+ E+  +     +PRR+ I   + +  ++    I  ED+ V VS  GY KR 
Sbjct: 457 SSALNDVIRDEIAEITTTYRSPRRSEIEAEVENLIIDSAITIAEEDVQVLVSRNGYYKRA 516

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  Y+A            + ++D       ++T   +  F++ G +    V  LP    
Sbjct: 517 SLRSYKASDSDN------GLAEDDLAIFEGQLNTTQHLFMFTNKGNIIYRPVHELPDSKW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI--QIN 669
           +  G+     LS    +     +   ++        VV  T  G +++  LSD +     
Sbjct: 571 KDTGEHFSQQLSNWHADEFVIKVIAIDNLEQEGAFTVV--TNDGFIKQTILSDMVPKAYK 628

Query: 670 RSGKIAMKLDSRDEILSV---ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           +   +A+KL +    +         ++ D+LL +  G  +RF ++ +     R + GV+ 
Sbjct: 629 KKTSMAIKLKTDSSYVVGIAYFKQAKQQDVLLLSHDGVGLRFKVTDVPEIGPRTA-GVKA 687

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D +++   + +                                           
Sbjct: 688 MDLRGTDTIMAALFITNDS----------------------------------------- 706

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                      Q +  V+  G  K     +   S R+ KG+      K      + A   
Sbjct: 707 -----------QQVAIVASNGAFKYMPISEINRSKRANKGLL-IFTQKKTVAYHVAAATI 754

Query: 847 VNDNDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              ++  + +++ +     + +++   + R   G  +    K+
Sbjct: 755 FEAHETALEILTTRWQAQELQLSDYHPSQRIGNGQYVVDVKKN 797



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 66/223 (29%), Gaps = 26/223 (11%)

Query: 684 ILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           I+       E D+ +  ++ G   R  + + +     N        LA+ D  I    + 
Sbjct: 491 IIDSAITIAEEDVQVLVSRNGYYKRASLRSYKASDSDNG-------LAEDDLAIFEGQLN 543

Query: 743 HADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                        I Y               E  +   ++   +  + +    +   +E 
Sbjct: 544 TTQHLFMFTNKGNIIYRPVHELPDSKWKDTGEHFSQQLSNWHADEFVIKVIAIDNLEQEG 603

Query: 799 FILTVSEKGFGKRTSSYD-----FRISNRSGKGIRATDVSKINEIGALVAVFPVND--ND 851
               V+  GF K+T   D     ++          +  +    +   +V +         
Sbjct: 604 AFTVVTNDGFIKQTILSDMVPKAYKKK-------TSMAIKLKTDSSYVVGIAYFKQAKQQ 656

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++L+S  G  +R  V ++      T GV        + +++ 
Sbjct: 657 DVLLLSHDGVGLRFKVTDVPEIGPRTAGVKAMDLRGTDTIMAA 699


>gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 750

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 245/742 (33%), Positives = 369/742 (49%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++  +      I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPENGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+N D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSKWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L+  K     +L G+L
Sbjct: 301 RDESAEDVRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V+VRR+K+ L +   R  +L G  IA  N+DEV+RIIR    P+       
Sbjct: 361 QEWLEHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 S-----------------------------LTDTQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
            L  E K+   +L+S  +    IK E+ +++D+         RRT+  +           
Sbjct: 452 GLSAEKKQIEALLASNEKQWATIKWEVTNIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     RLP G        +I  +  +Q                     ++ 
Sbjct: 564 VFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQD--------IVTAFVHDAKRKLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   N       + +   R GK  M + + DE       T  + + +  +  + + F +
Sbjct: 616 ASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTG-DHLAIVGENRKMLVFAL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + I    GR   GVR      G
Sbjct: 675 AEIPEM-GRG-KGVRLQKYKDG 694


>gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 898

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 240/795 (30%), Positives = 414/795 (52%), Gaps = 43/795 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            ++  I    + + + N +  YA  +I  RA+PD+RDGLKPV RRIL+ M Q+ + ++K 
Sbjct: 2   SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKP 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ GEV+GKYHPHG+++IYDA+ RM+Q W + + L++ QGN GS+DGD  AA RY
Sbjct: 62  YKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K ++ LL+DL K+TV F PN+D S  EP VL + +PN+LVNG  GIA G ATN+
Sbjct: 122 TEARLTKISNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNM 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E++D  + +I NP+I +D +++I++GPDFPTGA+I  + GI+ A+ TG+G ++I
Sbjct: 182 PPHNLSEIIDATINIIKNPNITIDQILKIVKGPDFPTGAIIQNKQGIREAFLTGKGKVII 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
               H EK +     IV+ EIPY+V K  +++KI +++     + I ++RDE+DR+G R+
Sbjct: 242 SSKWHQEKNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRI 296

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           VIEL   A+ + +   L++ T L   ++ N + +   +P++  LI I+KA+++  +EV +
Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYNNIIIVDKQPKQLGLIDIIKAYISHYKEVFI 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +RT++ LNKA  R  ++ GL  A+A LDEV+++IR S N   A   L++           
Sbjct: 357 KRTEFNLNKANLRLEIVNGLIKALAILDEVIKVIRKSENRIDAINNLVK----------- 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T   +  Q+ AI+++RL RLT    + +  E   L  +IK+  +I
Sbjct: 406 ---------------TFNFTTNQSTAIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L   I   L  VK +    R++++ + +   D++ ++ I+ +++ + +S  GY+
Sbjct: 451 LNNNLVLDNEIISRLEEVKKQFGIKRKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYI 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +               S    +  D      + S    ++  S     Y   ++++  
Sbjct: 511 KVI-----DNNILNKNELSSFGKKPNDMWIGQGVCSNLDHLILVSDQANYYSIPLYKIAN 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-IQ 667
              + +G  + ++ +    E I       E     +  +++  +K+G ++R ++SD   +
Sbjct: 566 SKWKDQGVHINSVATTQPNETIINAFIIKEF--INSTQHLLLVSKNGLIKRTQISDLETK 623

Query: 668 INRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I       MK+   D ++      ++ +   + TK G  VR+ I  I       S GV+ 
Sbjct: 624 IFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDI-PVQSTISKGVKA 682

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +L     + ++++  + D          K +      I    ++   +  +        
Sbjct: 683 ANLKDDHIISALSLDNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILVEKKKNKEQV 742

Query: 787 EERCQELKLKEQFIL 801
                        IL
Sbjct: 743 IFGFAINDQMSISIL 757



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 14/172 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE----ITSLKNDSSVEGNI 785
              D  I   +  + D           +     ++ +   ++    I S+      E  I
Sbjct: 529 KPNDMWIGQGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETII 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS--NRSGKGIRATDVSKINEIGALVA 843
           +    +E     Q +L VS+ G  KRT   D      N      ++  + KI++  +LV 
Sbjct: 589 NAFIIKEFINSTQHLLLVSKNGLIKRTQISDLETKIFN------KSFKIMKISDDDSLVY 642

Query: 844 VFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
              ++       +++  G  +R  + +I + S  +KGV   +  KD+ ++S 
Sbjct: 643 ADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTISKGVKAANL-KDDHIISA 693



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 94/251 (37%), Gaps = 14/251 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           ++ +K G ++    +     N++   +      D  +    C+  + ++L +        
Sbjct: 502 LWISKDGYIKVIDNNIL---NKNELSSFGKKPNDMWIGQGVCSNLDHLILVSDQANYYSI 558

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I   +     GV      +    + +I+  I+          +   K+   +R  I
Sbjct: 559 PLYKI-ANSKWKDQGVHINSVATTQPNETIINAFIIKEFINSTQHLLLVSKNGLIKRTQI 617

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
           S    +I +         +       +L   K  +   +++ G+  R +  D  + +   
Sbjct: 618 SDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCIITKNGYAVRYNIEDIPVQSTIS 677

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF- 883
           KG++A ++    +   +++   +++N  +++ ++K    R+  N I I  R  KG+ I  
Sbjct: 678 KGVKAANL----KDDHIISALSLDNNKDVLIFTNKNNYKRLDQNLIPIYIRPKKGIRILV 733

Query: 884 -STAKDERVVS 893
                 E+V+ 
Sbjct: 734 EKKKNKEQVIF 744


>gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 750

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 246/742 (33%), Positives = 370/742 (49%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++  D      I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPDNGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I++ D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSRWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L+  K     +L G+L
Sbjct: 301 RDESAEDIRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V+VRR+K+ L +   R  +L G  IA  N+DEV++IIR    P+       
Sbjct: 361 QEWLDHRRDVLVRRSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 S-----------------------------LTDTQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
            L  E K+   +L+S ++    IK E+ S++D+         RRT+  +           
Sbjct: 452 GLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     RLP G        +I  +  +Q                     ++ 
Sbjct: 564 VFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQD--------IVTAFVHDPKRKLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   N       + +   R GK  M + + DE       T  + + +  +  + + F +
Sbjct: 616 ASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTG-DHLAIVGENRKMLVFAL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S I    GR   GVR      G
Sbjct: 675 SDIPEM-GRG-KGVRLQKYKDG 694


>gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
 gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10]
          Length = 758

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 239/749 (31%), Positives = 374/749 (49%), Gaps = 65/749 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           + +   I   +  + +   YL YA++ I  RA+PD RDGLKPVHRR+L+ M ++ +  ++
Sbjct: 6   DPDGGHIIEETFNEALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRELKLNPDQ 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG+ ++Y+AL R+AQD++ R  L+EGQGNFG++DGD  AA R
Sbjct: 66  AFKKSARVVGDVIGKYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNIDGDGAAAMR 125

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL KAA  LL D+ + TVDF   YDGS +EP+VL   +PN+L NG  GIAVGMAT+
Sbjct: 126 YTEARLTKAAELLLQDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGSTGIAVGMATS 185

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSI 248
           +P HN+ E+    +A+ID P+ + +AL++ I+GPD PTG  I      I++AY TGRG  
Sbjct: 186 VPPHNVAEICAAALALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRSAYETGRGGF 245

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R     E       +IVVTEIPY V K+ ++E+IA+L+  K++  + D+ DES  +  
Sbjct: 246 RVRAKWEKEDIGRGMWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDVLDES-TEDI 304

Query: 309 RVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFRE 366
           R+V+E K      D+++  L++ T L++  S+N+  L+    P    L  +L+ ++  R 
Sbjct: 305 RLVLEPKSKLVDPDMLMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVLQIWLEHRR 364

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV VRR    L K  DR  VL G  I  A+LDEV+RIIRF   P+               
Sbjct: 365 EVAVRRATTRLAKVEDRLEVLAGYLIVYADLDEVIRIIRFEDEPKA-------------- 410

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q  AIL +RL  L  L   +IR E  +L  E K 
Sbjct: 411 ---------------KLMAHFELTERQAEAILNMRLRALRKLEELEIRKEDTNLRAERKT 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL---DMEDEDCIVREDM 538
             +++ S +     ++ E+ S+ +          RRT   +      +   E  +VRE +
Sbjct: 456 LKELIGSTALQWDKVRGEVKSLGEIYAETTPLGKRRTVFDKAPDISGEAPIEAFVVREPI 515

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
              +S  G+V        RA +      + +  ++ D         T   +L F++ G  
Sbjct: 516 TAVLSERGWV--------RALKGHINDVTELKFKEGDKSAFAVKCETTDRLLMFATDGKF 567

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  +  +LP G  +  G+ +   + L        +              ++ A+   +  
Sbjct: 568 YTLEASKLPGG--RGHGEPVRLHVDLPDDAAPIGLF------KYDPERTLLVASDGNSGF 619

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           R +  D + + + GK  + L   DE       T  + + L  +  + + F +  I V   
Sbjct: 620 RIQEKDCLALKKGGKQILNLAEGDEAFLCIPATG-DRVALIGENKKLLVFELEEIPVM-- 676

Query: 719 RNSVGVRGISL--AKGDQVISMAIVLHAD 745
             S G +G+ L   KG ++    +    D
Sbjct: 677 --SRG-KGVKLLGGKGAKLADATVFNAED 702


>gi|326332643|ref|ZP_08198911.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325949644|gb|EGD41716.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 643

 Score =  576 bits (1484), Expect = e-162,   Method: Composition-based stats.
 Identities = 248/671 (36%), Positives = 353/671 (52%), Gaps = 41/671 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +      ++ E+ I    I +EM++S+L Y+ +VI  RA+PD RDGLKPV RRILF M  
Sbjct: 5   KTTQDLPDDFEEHILDTDIGEEMRSSFLEYSYSVIYSRALPDARDGLKPVQRRILFTMND 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MGV  ++ +VKCARI GEVMGK HPHG+ AIYDAL RMAQ W++RL +I+G GNFGS  G
Sbjct: 65  MGVRPDRGHVKCARIVGEVMGKLHPHGDGAIYDALVRMAQPWAMRLPMIDGHGNFGSPGG 124

Query: 123 -DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            DP AA RYTE R+  AA  + DD+ +DTVDFRPNYD    EP VL A  PN+LVNG  G
Sbjct: 125 DDPAAAMRYTEARMGPAALAMTDDIKEDTVDFRPNYDSREMEPSVLPAAIPNLLVNGATG 184

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EV+     +I +P  +LD LM+ I GPD PTG  I+G  GI++AY
Sbjct: 185 IAVGMATNMAPHNLVEVIAAARHLIKHPGAELDTLMKFIPGPDLPTGGTIVGLDGIRDAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS  IR  + IE     R+ IV+TE+P+ +    ++E++  LV+ K+I  IADL+D
Sbjct: 245 ETGRGSFKIRATTRIETFGR-RKGIVITELPFNIGTEKIIERVKTLVQSKKIQGIADLKD 303

Query: 302 ESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +D + G R+VIE+K G   + +L QLY+ T L+  F +N VAL   +P    L  +L+ 
Sbjct: 304 LTDRQHGTRLVIEVKNGFVPEAVLEQLYKMTPLEDSFGINNVALVDGQPRTLGLKELLEV 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R +VV RR+++  +KA DR H++ GL IA+ ++DEV+++IR S N   A+  LM  
Sbjct: 364 FLGHRYDVVRRRSQFRRDKAADRLHLVDGLLIAILDIDEVIQLIRASENAGEAKDRLMS- 422

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LS+ Q   IL++ L RLT   + ++  E + L
Sbjct: 423 -------------------------VFDLSQPQAEYILDMALRRLTKFSKIELEKERDEL 457

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI---VRED 537
              I+    IL     L  ++  EL  V     TPRRT ++        E        + 
Sbjct: 458 QATIEYLDSILGDDEMLRKVVSDELGEVAKTFGTPRRTVLLASAGTPALEAMSLEVADDP 517

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               +S  G + R                +G    + D +  +   +    +   +S G 
Sbjct: 518 CFAMLSSTGLLAR--------SSDAEPFTTGSARANHDVIVSVVPATARGQIGVLTSRGR 569

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQ-GERITTIMPFPEDESSWNNLYVVFATKHGN 656
           + +  V  LP   P      L   L L+      +          + +   +   T+ G 
Sbjct: 570 LVRLGVLDLPAMPPTHGDPNLSGGLPLSALLSLESDERALALTTLATDGPGIALGTRLGV 629

Query: 657 VRRNKLSDFIQ 667
           V+R      + 
Sbjct: 630 VKRVNPEVLLN 640


>gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
 gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1]
          Length = 745

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/738 (32%), Positives = 377/738 (51%), Gaps = 61/738 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
              GI  V++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  + ++    +
Sbjct: 3   PPGGIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAGF 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+Y+AL R+AQD++ R  LI+GQGNFG++DGD  AA RYT
Sbjct: 63  KKCARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LLD L +D VDFR  YDG  +EP+VL   +PN+L NG  GIAVGMAT+IP
Sbjct: 123 EARLTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVI 250
            HN  E+ +    +I NP+ D  AL++ I+GPDFPTG + +    G+   Y TGRGS  +
Sbjct: 183 PHNAFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFRV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    IE     +  +VVTEIPYQV K+ ++EKIAEL+  +++  + D+RDES      V
Sbjct: 243 RARWAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRIV 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGILKAFVAFREEVV 369
           ++   R   A +++  L++ T L+S F +NM  L+  K      +  +L+ ++  R+ V+
Sbjct: 303 LVPRSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAVL 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +RR+++ L++   R  VL G  +A  NLDEV+RIIR    P+                  
Sbjct: 363 IRRSQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKA----------------- 405

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                           T  L++VQ  AIL +RL  L  L   +IR E + L  E  E   
Sbjct: 406 ------------ELMRTFGLTDVQAEAILNMRLRSLRKLEEMEIRKEHDKLSAERDELKA 453

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDMEDEDCI----VREDMVVT 541
           +L S +R    I +++  V           RR          + ED       +E + V 
Sbjct: 454 LLGSEARQWTRIGKDIAEVGKAYGPETPLGRRRTGFSEAPGHDVEDLQQAMIEKEPITVV 513

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++        RA +   +  S +  +  D +   F   T   +L FS+ G  +  
Sbjct: 514 ISDKGWI--------RALKGHQQDLSSLAFKQGDKLKLAFHAETTDKILVFSTGGKFFTL 565

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              RLP G  +  G+ +  ++ + +G+ + +               ++ A+         
Sbjct: 566 GADRLPGG--RGHGEPIRLMVDMEEGQDVVSAF------VHKPGRKLLVASDEARGFVVP 617

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            +D +   R GK  + L + +E +      + + + +  +  + + FP++ +    GR  
Sbjct: 618 ETDVVANTRKGKQVLNLTAPNEAVLC-IAAEGDHVAVIGQNRKLLVFPLAQVPEM-GRG- 674

Query: 722 VGVRGISLAKG---DQVI 736
            GVR      G   D V+
Sbjct: 675 RGVRLQRYRDGHLADAVV 692


>gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
 gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2]
          Length = 751

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 241/743 (32%), Positives = 378/743 (50%), Gaps = 63/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  + ++   I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKTLIPPEPQD---IQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ +  + K A+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG+V
Sbjct: 58  RLLRLDPSSPFKKSAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNV 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL   A  LL+ L +D V+FRP YDGS +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAMRYTESRLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +ID P      L+  ++GPDFPTG +++  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   +R   H E  +     IVVTEIP+ V K+ ++E+IAEL+ EK++  + D+
Sbjct: 238 AYATGRGGFRVRAKWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K +    +V++  L++ T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DIRIVIEPKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V+VRR+ +  ++   R  VL G  IA  NLD+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLVRRSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+++Q  +IL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLIKTFKLTDIQADSILNMRLRNLRKLEEMEIRGED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
             L  E+K+   +L+S+      + +++  V++          RRT+  +         +
Sbjct: 448 KKLRAELKDLKAVLASQDEQWKKVGEQVKKVRELFGPKTALGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G+V        R  +   +  S +  + +D +   F   T + +
Sbjct: 508 EALIEREPITVVVSDKGWV--------RTLKGHVEDLSNLTFKTDDRLGISFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L   + G  Y     +LP G  +  G  + + + L                 +      +
Sbjct: 560 LLLGTHGRFYTLDAQKLPGG--RGHGDPIRSFIDLEGDA------NIVSLFVNTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + + + +E  ++ T    + + +  +  + + FP
Sbjct: 612 IASHDGQGFVVNEDDCVGNTRKGKQVLNVTAPNEAAAICTVAG-DTVAVIGENRKMLIFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +   A     GVR      G
Sbjct: 671 LDQVPEMA--RGRGVRLQRYKDG 691


>gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
 gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM
           5305]
          Length = 785

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 257/775 (33%), Positives = 405/775 (52%), Gaps = 58/775 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-M 61
           +   +   +E   I  VS++DE +  YL YA +VI  RA+PD+RDGLKPV RRIL+ M  
Sbjct: 6   DADTNGQRDETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVMYH 65

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            + +  + K  KCA+I+G+  G YHPHG+A++YDAL R+AQD++LR  LI+GQGNFGS+ 
Sbjct: 66  DLRLTADSKPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGSII 125

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G PPAA RYTE +L   A  L+ +L   TV+ R NYDG  QEPVVL +R+P++LVNG  G
Sbjct: 126 GLPPAAARYTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGTQG 185

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNA 240
           IAVGMAT+IP HNL EVV  C+ +IDNPD  +  LM+ ++ PDFP G  I   R  ++N 
Sbjct: 186 IAVGMATSIPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELRNT 245

Query: 241 YATGRGSIVIRGVSHIEKTSGD--REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           Y TGRGSI +RG    +K      R ++V+T IPY V    ++  +  +   K++  +  
Sbjct: 246 YETGRGSIKVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQLVT 305

Query: 299 LRDESDRQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-----PERF 352
           + DES+ + G R+V+E+K    A+ ++  LY++T+L+  F+ N   L   +     P + 
Sbjct: 306 VADESNEELGMRLVLEVKHENDAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPAQC 365

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L+ F+ FR EVV +R ++LL +   R H+L G  I  + LD+ +R+IR S     
Sbjct: 366 NLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGKAD 425

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A ++LM+                             L E+QT AILE+ L R++ L  D 
Sbjct: 426 AAQKLMK--------------------------AFPLDEIQTDAILEMALYRISELEIDR 459

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDE 530
           I  EL     E +    +L+S +++  +I  EL  +       RRT +       + +  
Sbjct: 460 IIEELKEKRAEAERLRKLLASETKMWRLIADELGELGKTYGNKRRTGLGSSEEIAEFDPS 519

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             IV+E+  V ++  G++KRV            +    + +R+ D V ++   ST   ++
Sbjct: 520 AYIVKENTNVVLTSDGWIKRVGRI---------QSVDKMRVREGDTVINVLPASTLDQIV 570

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN----- 645
           FF+  G  Y   + ++P       G+ L   + L  G +I   +      +  ++     
Sbjct: 571 FFADDGTAYTLPIDQIPAS--SGYGEPLAKHIKLADGAKIVHGITTDPRFTPEDDSDEES 628

Query: 646 --LYVVFATKHGNVRRNKLSDFIQINRS-GKIAMKLDSRDEILSVETCTQENDILLTTKL 702
              Y++ AT+ G V     S F   +   G+   +L   D+++ V+   +   + L T+ 
Sbjct: 629 PLPYLLIATEMGQVMAISFSSFRPPSTKVGRKYCRLAKGDKVVFVDLIREHYTMFLATEQ 688

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            + + F ++ + + AG    GV+GI LA+GD V+   ++              K 
Sbjct: 689 ARVIHFELAEVPLLAG-PGRGVKGIKLAEGDSVLGGVLLGRPSDTLRVVNENGKQ 742



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 75/248 (30%), Gaps = 61/248 (24%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T  G ++R                M++   D +++V   +  + I+     G     
Sbjct: 529 VVLTSDGWIKRV-------GRIQSVDKMRVREGDTVINVLPASTLDQIVFFADDGTAYTL 581

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           PI  I   +G      + I LA G +++                                
Sbjct: 582 PIDQIPASSGYGEPLAKHIKLADGAKIV-------------------------------- 609

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKG 826
                   +  + +   + E   + +    ++L  +E G     S   FR   +    K 
Sbjct: 610 --------HGITTDPRFTPEDDSDEESPLPYLLIATEMGQVMAISFSSFRPPSTKVGRKY 661

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA---SRATKGVVIF 883
            R            +V V  + ++  + L +++  +I   + E+ +     R   GV   
Sbjct: 662 CRLAK------GDKVVFVDLIREHYTMFLATEQARVIHFELAEVPLLAGPGR---GVKGI 712

Query: 884 STAKDERV 891
             A+ + V
Sbjct: 713 KLAEGDSV 720


>gi|298346916|ref|YP_003719603.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063]
 gi|298236977|gb|ADI68109.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC
           43063]
          Length = 844

 Score =  575 bits (1483), Expect = e-162,   Method: Composition-based stats.
 Identities = 278/874 (31%), Positives = 408/874 (46%), Gaps = 115/874 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +       + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M
Sbjct: 1   MSDSSL-------ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+
Sbjct: 54  KQMGLTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  
Sbjct: 114 D-DGPAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAEFPNLLVNGAN 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ A
Sbjct: 173 GIAVGMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRG  + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +
Sbjct: 233 YENGRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQ 292

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+
Sbjct: 293 DLSDRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQ 352

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM 
Sbjct: 353 VFVDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT 412

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILELRL RLT   R ++  E + 
Sbjct: 413 --------------------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADE 446

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+S  +L  +++ ++      L TPRRT ++E               ++
Sbjct: 447 LRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVL 506

Query: 540 VTVSHLG--------YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             ++             + +  +  RA R    G    +      +    +  T  S   
Sbjct: 507 GAMTVSDVPLEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGV 566

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL----------------------------- 622
            +S GFV +  V  LP G   +   +                                  
Sbjct: 567 VTSSGFVVRLDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAP 626

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L+   R+          +   +  V   T  G V+R +        +     + L+  D
Sbjct: 627 QLSAAARLEDGETVVGILTLDEDETVGMMTARGIVKRMRPDYPST--QDRFSIINLEGTD 684

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV 
Sbjct: 685 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVP 743

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          M+A                                          
Sbjct: 744 DELVAATTVATVSAIMNAMPGANQSSI--------------------------------- 770

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                  K T    + +  R  +G+R     K  
Sbjct: 771 -------KLTPLDRYPVKGRGAQGVRVQRFLKGE 797



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 9/174 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL  G++         + A             +        + +     + ++   +   
Sbjct: 580 SLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGET 639

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFP 846
                   +++ +  ++ +G  KR    D+    +R         +  +     L+    
Sbjct: 640 VVGILTLDEDETVGMMTARGIVKRMRP-DYPSTQDR-------FSIINLEGTDQLIYAGA 691

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             D+ QI+++S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 692 CPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDE 745



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 59/185 (31%), Gaps = 21/185 (11%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNI 785
            L  G+ V+ +  +   +         +          + D   I +L+    +   G  
Sbjct: 633 RLEDGETVVGILTLDEDETVGMMTARGIVKRMRPDYPSTQDRFSIINLEGTDQLIYAGAC 692

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI------- 838
            ++    +   +  +L         RT +   R   R+  G+    + +  ++       
Sbjct: 693 PDDAQIVMISTDAQLL---------RTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVP 743

Query: 839 GALVAVFPVNDNDQIILVS---DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
             LVA   V     I+      ++ ++   P++   +  R  +GV +    K E  + + 
Sbjct: 744 DELVAATTVATVSAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEYALDMA 803

Query: 896 RIRES 900
            +   
Sbjct: 804 FVGPD 808


>gi|167766556|ref|ZP_02438609.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|167711679|gb|EDS22258.1| hypothetical protein CLOSS21_01062 [Clostridium sp. SS2/1]
 gi|291558594|emb|CBL37394.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [butyrate-producing bacterium SSC/2]
          Length = 750

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/733 (32%), Positives = 392/733 (53%), Gaps = 34/733 (4%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M ++G+ +++ + 
Sbjct: 2   SEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPHR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IY++L  M+QD+   + L++G GNFGS++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYTE 121

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RLQK      L DL K+ VDF  N+D + +EP VL  + PN+LVNG  GIAVGM T+IP
Sbjct: 122 ARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD   A +    I  + LME I+GPDFPTG +++ +  + N Y++G G + +R
Sbjct: 182 PHNLGEVVDAVKAYMRKESITNEELMEYIKGPDFPTGGLVINKKDLLNIYSSGTGKLKLR 241

Query: 252 GVSHIEKTSGDRE--QIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G    E      E  ++V++EIPY +   N +  L     L+  K   DI D+ +ES + 
Sbjct: 242 GKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESSKD 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL++GA  + + N LY+ T L+  F VNM+A+   +PE   L GI++    F  
Sbjct: 302 GIRIVLELRKGADVERLKNLLYKKTKLEDTFGVNMLAIVDGRPETLDLKGIIENHTQFYY 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV  R+ K LL+K  ++  +  GL  A   +D ++ IIR S + +  +  L +       
Sbjct: 362 EVTRRKYKTLLSKLYEQREIKEGLIKACDMIDLIIEIIRGSKSQKEVKACLTKGDVG--- 418

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                ++   SS ++     +  ++ Q  AIL+L+L RL GL    ++ E   +  +I+E
Sbjct: 419 -----NINFKSSDSMIEATKLSFTDKQASAILDLKLYRLIGLEILMLKEEYEEILAKIEE 473

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             DIL++   L  +I++EL  +K E    RRT + +G   +     +  E +   +   G
Sbjct: 474 YEDILNNEKSLKNVIRKELDKIKKEFGRERRTVVEDGKEAVYVAAPVKEETVYFVMDRFG 533

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K +  + Y+  +                   +        +  F++LG +++ KV  +
Sbjct: 534 YSKTMDKATYQRNKE----------NILKEYKFIVPCMNTDKICIFTNLGVMHQIKVLDI 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  + +G  + N+ + +  +     +    D  S  +  ++FAT    ++       +
Sbjct: 584 PAGKFRDKGVPIDNLCNYDSTKEYIIQVL---DAESMIHSSLLFATAKSMLKVMDGE-LL 639

Query: 667 QINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
              +    A KL   DE++ V         E+ ++L TK G  ++F +S I     ++++
Sbjct: 640 NAAKRTVQATKLSE-DELIEVIPIDWMEGSEDKVVLQTKEGVFLKFLLSEI-PKKKKSAL 697

Query: 723 GVRGISLAKGDQV 735
           GVRG+ L+K D +
Sbjct: 698 GVRGMKLSKDDSL 710



 Score = 46.7 bits (109), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN----DNDQIIL 855
           +L  + K   K         + R+   ++AT +S+      L+ V P++      D+++L
Sbjct: 622 LLFATAKSMLKVMDGELLNAAKRT---VQATKLSE----DELIEVIPIDWMEGSEDKVVL 674

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + +G  ++  ++EI    ++  GV     +KD+ + ++
Sbjct: 675 QTKEGVFLKFLLSEIPKKKKSALGVRGMKLSKDDSLTNI 713


>gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110]
 gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110]
          Length = 751

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 382/750 (50%), Gaps = 66/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL++ ++GPDFPTG + +  +  I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +VVTEIP+ V K+ ++EKIAEL  +K++  + D+
Sbjct: 238 AYTTGRGSFRVRARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K +     +++  L+R T L++   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DVRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A    
Sbjct: 357 LREWLDHLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 413 -------------------------LMKAFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    +L+S +     + +++  V+D          RRT   +         +
Sbjct: 448 KNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRRTTFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G++        R  +   +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVVSDKGWI--------RTMKGHVEDLSGLAFKQDDRLGFAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L Q        P     +     ++V
Sbjct: 560 LLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQEA-----APVALFVNKGGRKFLV 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G        D +   + GK  + +D  +E  +V      + + +  +  + + FP
Sbjct: 613 A-SHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVG-DTVAVIGENRKMLVFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKG---DQVI 736
           +  I   A     GVR      G   D V+
Sbjct: 671 LDQIPEMA--RGRGVRLQKYKDGGLSDVVV 698


>gi|304389377|ref|ZP_07371341.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304327366|gb|EFL94600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 844

 Score =  575 bits (1482), Expect = e-161,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 409/874 (46%), Gaps = 115/874 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +       + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M
Sbjct: 1   MSDSSL-------ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+
Sbjct: 54  KQMGLTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  
Sbjct: 114 D-DGPAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGAN 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ A
Sbjct: 173 GIAVGMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +
Sbjct: 233 YETGRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQ 292

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+
Sbjct: 293 DLSDRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQ 352

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM 
Sbjct: 353 VFVDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT 412

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILELRL RLT   R ++  E + 
Sbjct: 413 --------------------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADE 446

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+S  +L  +++ ++      L TPRRT ++E               ++
Sbjct: 447 LRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVL 506

Query: 540 VTVSHLG--------YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             ++             + +  +  RA R    G    +      +    +  T  S   
Sbjct: 507 GAMTVSDVPLEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGV 566

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL----------------------------- 622
            +S GFV +  V  LP G   +   +                                  
Sbjct: 567 VTSSGFVVRLDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAP 626

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L+   R+          +   +  V   T  G V+R +        +     + L+  D
Sbjct: 627 QLSAAARLEDGETVVGILTLDEDETVGMMTARGIVKRMRPDYPST--QDRFSIINLEGTD 684

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV 
Sbjct: 685 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVP 743

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          M+A                                          
Sbjct: 744 DELVAATTVATVAAIMNAMPGANQSSI--------------------------------- 770

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                  K T    + +  R  +G+R     K  
Sbjct: 771 -------KLTPLDRYPVKGRGAQGVRVQRFLKGE 797



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 9/174 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL  G++         + A             +        + +     + ++   +   
Sbjct: 580 SLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGET 639

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFP 846
                   +++ +  ++ +G  KR    D+    +R         +  +     L+    
Sbjct: 640 VVGILTLDEDETVGMMTARGIVKRMRP-DYPSTQDR-------FSIINLEGTDQLIYAGA 691

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             D+ QI+++S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 692 CPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDE 745



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNI 785
            L  G+ V+ +  +   +         +          + D   I +L+    +   G  
Sbjct: 633 RLEDGETVVGILTLDEDETVGMMTARGIVKRMRPDYPSTQDRFSIINLEGTDQLIYAGAC 692

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            ++    +   +  +L         RT +   R   R+  G+    + +      ++A  
Sbjct: 693 PDDAQIVMISTDAQLL---------RTPANKVRPQGRNAGGVAGMSLKE---HTQVIAGA 740

Query: 846 PVNDNDQI---------------ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V   D++               +  +++ ++   P++   +  R  +GV +    K E 
Sbjct: 741 IVP--DELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEY 798

Query: 891 VVSVERIRES 900
            + +  +   
Sbjct: 799 ALDMAFVGPD 808


>gi|315656631|ref|ZP_07909518.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492586|gb|EFU82190.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 844

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 279/874 (31%), Positives = 409/874 (46%), Gaps = 115/874 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +       + I  + I +EM++S+L YA +VI  RA+PD +DGLKPV RRILF M
Sbjct: 1   MSDSSL-------ERIQDIDINEEMEHSFLEYAYSVIHARALPDAKDGLKPVQRRILFQM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+  +K +VK  R+ G+VMGK HPHG++AIYDAL R+AQ +++R+ LI+G GNFGS+
Sbjct: 54  KQMGLTPDKGHVKSQRVVGDVMGKLHPHGDSAIYDALVRLAQPFTMRVPLIDGHGNFGSL 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL  AA  L+DDL +D VDF PNYD    +P VL A +PN+LVNG  
Sbjct: 114 D-DGPAAARYTEARLAPAALALVDDLDEDVVDFVPNYDNQLTQPAVLPAAFPNLLVNGAN 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+GE ++  + ++D+P  D   LM+   GPD P G +I+G  GI+ A
Sbjct: 173 GIAVGMATNIPPHNVGETINAAIHLLDHPQADTAELMKYCPGPDLPGGGIIVGLDGIREA 232

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  + R  + IE+ +  +  IV+TE+PYQV    + EK+ E V   ++  ++  +
Sbjct: 233 YETGRGIFITRARATIEQVTARKRGIVITELPYQVGPERVAEKLKESVSSGKVKGVSGWQ 292

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D SDR  G R+V+E+K G   + +L  LY+YT LQ  F +N VAL   +P    L   L+
Sbjct: 293 DLSDRTHGMRLVVEVKNGFHPEAVLASLYKYTPLQESFGINTVALVDGQPRTLGLKAALQ 352

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R EV  RR+++ L K ++R H++ GL IAV NLDEV+ +IR S +   AR+ LM 
Sbjct: 353 VFVDHRVEVTRRRSEFRLKKKQERLHLVDGLLIAVLNLDEVIEVIRTSDDSAAARQRLMT 412

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILELRL RLT   R ++  E + 
Sbjct: 413 --------------------------VFDLSEAQAEFILELRLRRLTKFSRLELEAEADE 446

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E   IL+S  +L  +++ ++      L TPRRT ++E               ++
Sbjct: 447 LRQAIAELEQILASTEKLHDVVRSDMRQTAARLSTPRRTVLLEEDGSAVAASKDAALPVL 506

Query: 540 VTVSHLG--------YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
             ++             + +  +  RA R    G    +      +    +  T  S   
Sbjct: 507 GAMTVSDVPLEVPDVPCRIILGADGRAIRLTHTGPVTRLEGFNSTIAGSILTHTRGSFGV 566

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINIL----------------------------- 622
            +S GFV +  V  LP G   +   +                                  
Sbjct: 567 VTSSGFVVRLDVLSLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAP 626

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L+   R+          +   +  V   T  G V+R +        +     + L+  D
Sbjct: 627 QLSAAARLEDGETVVGILTLDKDETVGMMTARGIVKRMRPDYPST--QDRFSIINLEGTD 684

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           +++    C  +  I++ +   Q +R P + +R   GRN+ GV G+SL +  QVI+ AIV 
Sbjct: 685 QLIYAGACPDDAQIVMISTDAQLLRTPANKVRP-QGRNAGGVAGMSLKEHTQVIAGAIVP 743

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                          M+A                                          
Sbjct: 744 DELVAATTVATVAAIMNAMPGANQSSI--------------------------------- 770

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                  K T    + +  R  +G+R     K  
Sbjct: 771 -------KLTPLDRYPVKGRGAQGVRVQRFLKGE 797



 Score = 71.4 bits (173), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 9/174 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           SL  G++         + A             +        + +     + ++   +   
Sbjct: 580 SLPPGEKSSLADSAGASSATAAGSTETEDIELSLTESAPLWSFDGAPQLSAAARLEDGET 639

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFP 846
                   K++ +  ++ +G  KR    D+    +R         +  +     L+    
Sbjct: 640 VVGILTLDKDETVGMMTARGIVKRMRP-DYPSTQDR-------FSIINLEGTDQLIYAGA 691

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             D+ QI+++S    L+R P N++R   R   GV   S  +  +V++   + + 
Sbjct: 692 CPDDAQIVMISTDAQLLRTPANKVRPQGRNAGGVAGMSLKEHTQVIAGAIVPDE 745



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 60/190 (31%), Gaps = 31/190 (16%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV--EGNI 785
            L  G+ V+ +  +   +         +          + D   I +L+    +   G  
Sbjct: 633 RLEDGETVVGILTLDKDETVGMMTARGIVKRMRPDYPSTQDRFSIINLEGTDQLIYAGAC 692

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            ++    +   +  +L         RT +   R   R+  G+    + +      ++A  
Sbjct: 693 PDDAQIVMISTDAQLL---------RTPANKVRPQGRNAGGVAGMSLKE---HTQVIAGA 740

Query: 846 PVNDNDQI---------------ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            V   D++               +  +++ ++   P++   +  R  +GV +    K E 
Sbjct: 741 IVP--DELVAATTVATVAAIMNAMPGANQSSIKLTPLDRYPVKGRGAQGVRVQRFLKGEY 798

Query: 891 VVSVERIRES 900
            + +  +   
Sbjct: 799 ALDMAFVGPD 808


>gi|309792011|ref|ZP_07686489.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
 gi|308226005|gb|EFO79755.1| DNA gyrase, A subunit [Oscillochloris trichoides DG6]
          Length = 1340

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 299/791 (37%), Positives = 438/791 (55%), Gaps = 90/791 (11%)

Query: 119  SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            S+DGDP AA RYTE RL   A  LL D+ K+TVDFR N+DGS++EP VL    PN+L+NG
Sbjct: 629  SIDGDPAAAMRYTEARLSTIAEELLFDIDKNTVDFRDNFDGSYREPSVLPGLLPNLLLNG 688

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GIAVGMATNIP HNL E+ D  + +IDNP++ ++ L++II GPDFPT   ILG  GI 
Sbjct: 689  AAGIAVGMATNIPPHNLKELCDAIIYLIDNPEVTVEELIKIIPGPDFPTAGNILGTEGIL 748

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             AY TGRG I +R  +HIE+ +     IVVTE+PYQVNKA + E+IAEL ++K+I  I D
Sbjct: 749  AAYGTGRGQITLRAKAHIEEANRGAFNIVVTELPYQVNKARLQERIAELAKDKKIEGIRD 808

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY--KPERFTLIG 356
            +RDESDR G R+VI LK+ A    +LN LY++T +Q+ F +NM+AL     +P+  TL  
Sbjct: 809  VRDESDRAGMRLVILLKQDAQPKRVLNALYKHTQMQTTFGINMLALVDQGRQPKVLTLKR 868

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            +L+ +VA R+EV+ RRT+Y L KAR RAH+L GL IA+ N+D ++R IR S + E AR  
Sbjct: 869  MLQEYVAHRQEVIRRRTEYDLEKARARAHILEGLKIALDNIDAIIRTIRESRSVEIARNN 928

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            L+                              LSE+Q +AIL+++L RL  L R  I +E
Sbjct: 929  LIS--------------------------NFSLSEIQAQAILDMQLRRLAALERKKIEDE 962

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVR 535
               +   I E  DIL++  R+L +I+Q+L  +K++    RRTRI+     ++ DED I  
Sbjct: 963  YAEVIKLIAELEDILANPRRVLQMIQQDLQRLKEKYGDERRTRIIPDASGEVSDEDLIPD 1022

Query: 536  EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
              +++T++  GYVKR    VYR QRRGG+G   +  R++D V  L    +H ++LFF+  
Sbjct: 1023 VRVLITLTDRGYVKRQATDVYRTQRRGGRGVRAMTTREQDLVRHLLTCGSHDNLLFFTDK 1082

Query: 596  GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
            G VY+ K   +P  +  A+G  L+N++SL+ GE++T+++  P+     +  Y+V AT  G
Sbjct: 1083 GKVYQLKAHEVPDSARTAKGLPLVNLISLDPGEQVTSMLAVPDY----DGEYLVMATHRG 1138

Query: 656  NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             ++R +LS++ Q+  +G IA+ L+  D +  V       D+L+TT  GQ +RF   A+R 
Sbjct: 1139 KIKRTQLSEYSQVRSNGLIAIGLEEGDVLGWVRVSNGHEDVLMTTVKGQTIRFQQQAVRS 1198

Query: 716  FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              GR + GV GI+L++GD+VISM + +                                 
Sbjct: 1199 M-GRPATGVNGINLSEGDRVISMELAIPDSD----------------------------- 1228

Query: 776  KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                    +L V+ +GFGKRT   D+    R+  G+    +   
Sbjct: 1229 ------------------------LLVVTARGFGKRTELGDYPTKGRATGGVITIRLRPG 1264

Query: 836  NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                 +     VN    +  V+  G ++R    EI   SRAT+GV + +    +RV ++ 
Sbjct: 1265 ---DEVAGAAIVNQRSLLTFVTAAGVVMRTSAGEISQLSRATQGVTVVNPDDGDRVAALS 1321

Query: 896  RIRESEIVDEA 906
                 E   E 
Sbjct: 1322 VEEPDEDTGEP 1332



 Score =  220 bits (560), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 63/108 (58%), Positives = 84/108 (77%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  VSIT EM+ +YL+YA++VI+ RA+PD RDG+KPV RRI++GM  MG   N  Y K A
Sbjct: 6   VKPVSITTEMRTAYLSYAMSVIVSRALPDARDGMKPVQRRIMYGMWDMGFRANTAYKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           RI G+V+GK HPHG++++YDALAR+AQ W++R  LI+GQGNFG   GD
Sbjct: 66  RIVGDVLGKMHPHGDSSVYDALARLAQPWNMRYPLIDGQGNFGCFTGD 113


>gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1]
 gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 744

 Score =  575 bits (1481), Expect = e-161,   Method: Composition-based stats.
 Identities = 250/746 (33%), Positives = 384/746 (51%), Gaps = 69/746 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  ++ D      I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MTKPAVTGD------IRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++ +  + KCAR+ G+V+GKYHPHG+ A+YD L R+AQD+++R  L+EGQGNFG++
Sbjct: 55  RQLKLDPSGGFKKCARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNI 114

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE +L + A  L++ L +D+VDFRP YDG+ +EPVV+ + +PN+L NG  
Sbjct: 115 DGDNAAAMRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSA 174

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+GE+ D    +I  PD D+D L+  + GPDFPTG V +  +  I  
Sbjct: 175 GIAVGMATSIPPHNIGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TG+G+  +R    +EK S    QIV+TEIPYQV KA ++EKIAEL+ EK++  +AD+
Sbjct: 235 AYRTGKGAFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADI 294

Query: 300 RDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFT 353
           RDES     R+V+E +     A++++ QL+R T L+S FS+NM  L         P    
Sbjct: 295 RDESAE-DIRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMN 353

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+AF+  R  V+ RR ++ L K   R  VL G     A+LD+V+RIIRF+  P+  
Sbjct: 354 LKEVLRAFLDHRMVVLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEPK-- 411

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                          +LI              T  LSEVQ  AIL +RL  L  L   +I
Sbjct: 412 --------------AELIK-------------TFKLSEVQAEAILNMRLRSLNKLQELEI 444

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL--D 526
           + E   L  E  +   +L+   R    I  +    +           RRT + +      
Sbjct: 445 KTEHAELSAEKADLEALLADEPRRWAAIAAQNDETRKAFGGATALGKRRTELGDAPSAVV 504

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  E  + RE + + +S  G++        RA +        +  ++ D +  L    T 
Sbjct: 505 VPIEAYVEREAITMVLSEKGWI--------RALKGHSDAPEALKFKEGDQLGHLLKAWTT 556

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             +L F++ G  Y     +LP G  +  G+ L  ++ L     I  +M            
Sbjct: 557 DKILVFATDGRFYTIGGDKLPSG--RGHGEPLRLMIDLAGDVDIAAVM------VHKPGR 608

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
            ++ AT        + ++ +   R+GK+ +     ++        + + + +  +  + +
Sbjct: 609 KLLVATNTDRGFVVEENEVLAQTRAGKMVLNCADGEKAKFC-LPFEGDAVAVIGENRKLL 667

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG 732
            F    I V       GV       G
Sbjct: 668 VFMAEEIPVLT--RGRGVILQKYRDG 691


>gi|123965239|ref|YP_001010320.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
 gi|123199605|gb|ABM71213.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9515]
          Length = 813

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 269/808 (33%), Positives = 437/808 (54%), Gaps = 55/808 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + 
Sbjct: 3   KEKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+Y+AL R+ QD+S +   ++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L ++  DTV +  N+DGS +EP +L A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHECFLQEIETDTVSYSNNFDGSQKEPDILPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE++DG +A+I + DI    L +II GPDFPTG  +L   GIKN Y  GRGSI IR
Sbjct: 183 PHNLGEIIDGLIALIRDKDISDSKLSKIILGPDFPTGGELLYNNGIKNVYLEGRGSITIR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV   E+ +       R  ++++E+PYQ++KA  +EK+AELV   +I  I+D+RDESDR 
Sbjct: 243 GVIKSEEINLGKGKHKRNALIISELPYQISKAGWIEKLAELVNIGKIDGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIELK+ ++ +++++ LY+ T+LQS F   ++AL   KP + TL   L  F+ FRE
Sbjct: 303 GMRIVIELKKDSNPEIVISNLYKKTTLQSNFGAILLALVNGKPVQLTLRKYLNYFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + +RTKY L  A ++  +L G +IA  N+  ++ II+ S N   A+  L+ +      
Sbjct: 363 ETIRKRTKYFLKIASEKLEILEGFSIATKNIKNIIEIIQNSENVSEAKSILIPK------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LS  Q  A+L + L +LT L +  + NE+N L  + K 
Sbjct: 417 --------------------LDLSNKQADAVLSMPLKKLTNLEKKQVENEINQLFEKKKY 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR---EDMVV--- 540
              +L++RS LL  + +EL+ +K + +  R+T+I++ +   E+ D I     ED+++   
Sbjct: 457 LSTLLNNRSLLLETLIKELIELKKKFNVKRKTKILKDINQSEELDTINNQILEDLIIKDA 516

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S         L  Y  ++   +    +  +  +    +  +     ++  +S G V +
Sbjct: 517 KISIDNRFYFKKLIYYNYKKLLDQENKFIENK--NVQKFICNIKKSLRIIGVTSSGKVLQ 574

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +     +   K L N            I+ F + +S+  N Y+      G  ++ 
Sbjct: 575 INWKSIINNVYKLDNKILGN-------INPKEIINFHDLDSNLEN-YICIICSDGKFKKV 626

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAG 718
            L   +  +       KL +  +I+     +QE +I++ T +G+  +F +S   ++  + 
Sbjct: 627 LLDKDMIRSTRIFSITKLKNSTKIIDSFIYSQEENIIILTSIGRIFKFNLSNEYLKP-SS 685

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           + S G+  ++L   +Q++S       D  Y               + +    ++  +   
Sbjct: 686 KQSQGILLVNLLPKEQIVSCCKSKEKDLLYLISNKGKFFELKINEVYNSYNSKLGYINE- 744

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEK 806
              +  ++ +   ++    Q+I   + K
Sbjct: 745 ---KIQLNNDHFIKVLTNNQYIDFETNK 769



 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 51/110 (46%), Gaps = 11/110 (10%)

Query: 797 EQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           E +I  +   G  K+        R +       R   ++K+     ++  F  +  + II
Sbjct: 611 ENYICIICSDGKFKKVLLDKDMIRST-------RIFSITKLKNSTKIIDSFIYSQEENII 663

Query: 855 LVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           +++  G + +  ++   ++ +S+ ++G+++ +    E++VS  + +E ++
Sbjct: 664 ILTSIGRIFKFNLSNEYLKPSSKQSQGILLVNLLPKEQIVSCCKSKEKDL 713


>gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 856

 Score =  574 bits (1480), Expect = e-161,   Method: Composition-based stats.
 Identities = 270/771 (35%), Positives = 406/771 (52%), Gaps = 66/771 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ +   D    +      +   + + YLTYA++ I+ RA+PD RDGLKPVHRRILF M
Sbjct: 40  MTDTVDDPDNPISEFAEP--LRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAM 97

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    ++ K ++ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 98  RELRLNSGGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 157

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ L +D VDFR NYDG+ +EPVVL A +P++L NG  
Sbjct: 158 DGDNPAASRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAA 217

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L+  I GPDFPTG VI+     I  
Sbjct: 218 GIAVGMATNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAE 277

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R    +E     + QI+VTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 278 AYRTGRGSIRLRSKWEVEDLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADV 337

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E K R    ++++  L+R + L+  FS+NM   ++G  P+  +L  +
Sbjct: 338 RDESA-DDVRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEV 396

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA---- 413
           L+AF+ FR EV++RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A    
Sbjct: 397 LRAFLDFRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYE 456

Query: 414 -----RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT---------------------- 446
                 ++ + R+ N  D    +  ID +S  +  D T                      
Sbjct: 457 DWSRPHQDTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVG 516

Query: 447 --MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+VQ  AIL +RL  L  L   ++  E ++L  E     D+L S     G I  E
Sbjct: 517 RSEGLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDE 576

Query: 505 LLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L   K +         RRT+  E     +   E  I RE + +  S +G++        R
Sbjct: 577 LKDAKKKFGKDYVAGARRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWI--------R 628

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           A             +D D     F   T   ++ F++ G  Y      LP G  +  G+ 
Sbjct: 629 AMSGHVDLTRDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGG--RGMGEP 686

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L  ++ L             +      +  ++ A+K GN      +D +   ++GK  + 
Sbjct: 687 LRLMVDLPNDVE------IIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLN 740

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           + S D    V+     + + + ++  + + FPI+ +    GR   GVR   
Sbjct: 741 V-SDDVAKLVKPVAG-DHVAVVSENRKLLVFPIAELPEM-GRG-KGVRLQK 787



 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 22/228 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    D++   R  + A   +  D  L      +   I+  +++G         IR  +
Sbjct: 581 KKKFGKDYVAGARRTQFAEAAEVPDVPLEAMIEREPVTIVC-SQMGW--------IRAMS 631

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R      GD         HA+      +             +           
Sbjct: 632 GHVDL-TRDFKFKDGD---GPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPL 687

Query: 778 DSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              V+     E         ++ ++  S+ G G      D     ++GK +        +
Sbjct: 688 RLMVDLPNDVEIIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVS----D 743

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           ++  LV   PV   D + +VS+   L+  P+ E+    R  KGV +  
Sbjct: 744 DVAKLV--KPVA-GDHVAVVSENRKLLVFPIAELPEMGR-GKGVRLQK 787


>gi|294786988|ref|ZP_06752242.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315226629|ref|ZP_07868417.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
 gi|294485821|gb|EFG33455.1| DNA gyrase, A subunit [Parascardovia denticolens F0305]
 gi|315120761|gb|EFT83893.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia
           denticolens DSM 10105]
          Length = 906

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 262/890 (29%), Positives = 412/890 (46%), Gaps = 85/890 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RRI++ M QM +  
Sbjct: 12  DPRTVKQKIVDTPLGEEMSTSFLAYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLTP 71

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQD+++RL L++G GNFGS+D D PAA
Sbjct: 72  DKPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQDFAMRLPLVDGHGNFGSLD-DGPAA 130

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  + + + ++TVDF PNYD   QEP VL +  PN+LVNG  GIAVGMA
Sbjct: 131 SRYTEARLAPAALGMNESINEETVDFAPNYDNKLQEPTVLPSAIPNLLVNGASGIAVGMA 190

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNL EVV G   ++ +PD   D LM  I GPD P G +I+GR GIK AY +GRGS
Sbjct: 191 TNMITHNLAEVVAGAKYLMAHPDATTDDLMHYIPGPDLPGGGIIMGREGIKEAYESGRGS 250

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
              R  +HIE  +  ++ IVVTE+P+ V    +LE+I++ V+ K++  I+   D +D   
Sbjct: 251 FSTRATTHIENVTARKKAIVVTELPFMVGPEKVLERISDGVKNKKLDGISGAIDLTDRHN 310

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G     +L QL++YT L+  F++N VAL G +P    L  +L  ++  R 
Sbjct: 311 GTRLVIEIKTGFDPHAVLGQLFKYTPLEDSFTINNVALVGGRPHTMGLKELLDVWIQHRR 370

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+ RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S N ++A+  LM        
Sbjct: 371 EVITRRSQYRKRKAEERLHLVDGLLLALIDIDEVIEVIRSSDNADSAKTRLMA------- 423

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L E+Q + IL+LRL RLT + R ++ +E + L   I E
Sbjct: 424 -------------------VFDLDEIQAQYILDLRLRRLTKMSRIELESERDDLQRAIAE 464

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE--DMVVTVSH 544
             +IL+S  R   ++ + +  V  +  TPRRT +++   +         E    V     
Sbjct: 465 LDEILASDQRRDAVVIESMDHVVRDYGTPRRTVLLDVDEEGAYSPVPAAELGQEVDASIK 524

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVM--RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
            G      L+            S      + ED    + + +        ++   +++ +
Sbjct: 525 QGEALSSALATASLAASAPIPASAGSEGLKLEDKPCAIILSADRLIGRASATALDLWRSR 584

Query: 603 VWRL----PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
                             + +    +        +    +      +   +  +  G VR
Sbjct: 585 PLDAVRQPHDQIRTVIPSSTLASYGIVTSAGRLVLAHTADLPLLHLDPDKLSLSAQGGVR 644

Query: 659 RNKLSDFIQIN-----RSGKIAMKL----------DSRDEILSVETCTQEND----ILLT 699
            + L    +             + L          + +D+  S E      D    + + 
Sbjct: 645 VDDLLTHTESTEAVAGEKAITVIPLAGSKEHEGESEDKDKDESKEKAAGGQDGPAPLAIG 704

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDERIC 753
           T  G   R+ + +       +      I L   D ++  A    AD      +D      
Sbjct: 705 TARGIVKRWNMDSPTTMDSWSI-----IDLKDDDSLVFAAPATDADRLVFISSDSSLLTY 759

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ--------------- 798
              ++  Q R   G      +  +       +   +   +  +E+               
Sbjct: 760 TADNVRPQGRNAGGMGGIKLADGSRVLAFAVVPAGQLAWVPAQEEGDQAASGAVVVTVAG 819

Query: 799 --FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
               LT ++ G  K T    +    R+  G+R+    K     +L+A F 
Sbjct: 820 DAEALTGTDNGSAKVTPLELYPTKGRNTGGVRSQRFLKG--QNSLLAAFV 867



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 82/273 (30%), Gaps = 27/273 (9%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +  +    + R   +           A++    D+I +V   +      + T  G
Sbjct: 557 DKPCAIILSADRLIGRASATALDLWRSRPLDAVRQPH-DQIRTVIPSSTLASYGIVTSAG 615

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + V    + + +             L      +S    +  D               +  
Sbjct: 616 RLVLAHTADLPLLH-----------LDPDKLSLSAQGGVRVDDLLTHTESTEAVAGEKAI 664

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
            +                + + S+E+    +     +   + +G  KR +      +   
Sbjct: 665 TVIPLAGSKEHEGESEDKDKDESKEKAAGGQDGPAPLAIGTARGIVKRWNMDS-PTT--- 720

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              + +  +  + +  +LV   P  D D+++ +S   +L+    + +R   R   G+   
Sbjct: 721 ---MDSWSIIDLKDDDSLVFAAPATDADRLVFISSDSSLLTYTADNVRPQGRNAGGMGGI 777

Query: 884 STAKDERVVS--------VERIRESEIVDEAES 908
             A   RV++        +  +   E  D+A S
Sbjct: 778 KLADGSRVLAFAVVPAGQLAWVPAQEEGDQAAS 810


>gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
 gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099]
          Length = 750

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 369/742 (49%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++   +     I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKRLLPPQDGGGDHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ + KCARI GEVMGK+HPHG+ +IYDAL R+AQD+S+R  L++GQGNFG++
Sbjct: 61  RLLRLNPDQGFAKCARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL  + +D VD+RP Y+   +EPVVL   +PN+L NG  
Sbjct: 121 DGDNAAAMRYTEARMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I++ D  +  LM+ ++GPDFPTG +I+  R  I  
Sbjct: 181 GIAVGMATSIPPHNAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EKIAEL+  +++  + D+
Sbjct: 241 AYETGRGGFRVRSKWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           RDES      V++   R     +++  L++ T L+S F +NM  L+  K     +L G+L
Sbjct: 301 RDESAEDIRVVLVPKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R +V++RR+++ L +   R  +L G  IA  N+DEV++IIR    P+       
Sbjct: 361 QEWLDHRRDVLIRRSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 S-----------------------------LTDNQAEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
            L  E K+   +L+S ++    IK E+ +++D+         RRT+  +           
Sbjct: 452 GLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGKRRTQFADAPEHDLTDIAH 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I RE + V VS  G++        RA +      S +  ++ D +   F   T   VL
Sbjct: 512 AMIEREPVTVVVSEKGWL--------RAMKGHLADLSTLTFKEGDSLKLAFHAQTTDKVL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     RLP G        +I  +  +Q                     ++ 
Sbjct: 564 VFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQD--------IVTAFVHDPKRKLLL 615

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+   N       + +   R GK  M + + DE          + + +  +  + + F +
Sbjct: 616 ASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIG-DHLAIVGENRKMLVFAL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S I    GR   GVR      G
Sbjct: 675 SEIPEM-GRG-KGVRLQKYKDG 694


>gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans]
 gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Herminiimonas arsenicoxydans]
          Length = 776

 Score =  574 bits (1479), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/809 (31%), Positives = 380/809 (46%), Gaps = 71/809 (8%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+   +        G  S+++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MTDQANLFDTAAPADGGESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+GQGNFGS
Sbjct: 61  MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  L++++   TVDF+PNYDGS +EP +L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT IP+HNL EV    VA+I NP +  + L+ I+ GPDFP G   I   T I 
Sbjct: 181 SGIAVGMATEIPSHNLREVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +GRGS+ +R    IE  +  + Q VVTE+P+  +   +LE+I EL   K  +    
Sbjct: 241 DIYRSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKS 300

Query: 299 ------------------LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFS 338
                             +RDES R    R+V E K +        N L  +TSL++  S
Sbjct: 301 LSPEQLALKQTVLAMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVS 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    KP +  L  IL+ +V FR   + RR+++ L K  DR H+L G    + N+
Sbjct: 361 INLVMIGGDGKPRQKALGDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V++IIR S  P+ A                                   LSE Q   I
Sbjct: 421 DKVIKIIRESDEPKPA-----------------------------LMDAFRLSERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+ + + +    RR
Sbjct: 452 LEIRLRQLARLETIKIQQELAELRSEKSTLQDLLDNPSSMKRLVIKEIEADEKQFGDKRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I         E  ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 TLIE-VAEKAVVETRVIDEPVTVVISQKGWV--------RARTGHGHDAAQFTFKASDAL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
            D F   T  ++L F S G +Y   V  LP              + +     + +     
Sbjct: 563 YDTFECRTVDTLLVFGSNGRIYSVAVAALPGARGDG--------VPITTLVELASGTRVL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDI 696
              +   ++ ++ A+  G     K  D +   RSGK  + LD  DE L+        + I
Sbjct: 615 HYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRSGKAFITLDEGDEPLTPRPIFAGASAI 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              ++ G+ + F I  I+        GV  + L K +++++   +              K
Sbjct: 675 ACLSEKGRVLVFGIDEIKSLTA-GGRGVILMDLEKNEKLLAAQPISQRGVVVSGIGRGAK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                              +    +E  I
Sbjct: 734 AQEILLSASGLAVHIGKRARKGKGLESKI 762


>gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
 gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568]
          Length = 737

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 249/734 (33%), Positives = 387/734 (52%), Gaps = 55/734 (7%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
            I +   E   I    + D +   YL YA++ I  RA+PD+RDG KPVHRRI++ M QM 
Sbjct: 2   TIHTPTPEGGRIVEEPMGDALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAMHQMR 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  L++GQGNFG++DGD 
Sbjct: 62  LNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDS 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTEC+L  AA  LLD + +D VDFRP YD   +EPVVL A +PN+L NG  GIAV
Sbjct: 122 AAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSSGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+GE++D C  +++ PD   + L++I+ GPDFPTG   + G   + +AY T
Sbjct: 182 GMATSIPPHNVGELIDACQLLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLDAYET 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R     E       +IVVTEIPYQV K+ ++E++A+L+  K+   +AD+RDES
Sbjct: 242 GRGGVRLRAAWDTEDLGRGVWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADVRDES 301

Query: 304 DRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
                R+++E K R    +V++  L++ + L++ F +NM  L+    P    L   L+AF
Sbjct: 302 AE-DIRLILEPKSRTVEPEVLMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCLRAF 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R  V+ RR+++ + +   R H+L GL I   NLDEV+RI+R    P+ A        
Sbjct: 361 LDHRRVVLNRRSQWRIARVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKAA-------- 412

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                   T  LSE+Q   IL+ RL +L  L    I  E   L 
Sbjct: 413 ---------------------LIATFGLSELQADFILDTRLRQLARLEEMTIEKEFKELS 451

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCIVREDM 538
            E+     + SS ++    I +EL +V+  L +PRRT I + +     +  E  I RE +
Sbjct: 452 EELAALQALTSSETKQWKAIGKELEAVRKALVSPRRTVIGDAVDASAFVAPEAFIPREAI 511

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G++        RA +      S +  ++ D +  L    T   +L  +S G +
Sbjct: 512 TVILSDRGWI--------RAAKGKVDDPSELKFKEGDKLGFLVPAYTTDKLLVGASDGRI 563

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +     +L  G  +  G+ L  ++ L++   I  ++          +  ++ A+K G   
Sbjct: 564 FTIGADKLASG--RGHGEPLRLMIDLDEKAEIINVVA------HEPDAKLLIASKAGYGF 615

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
               +D +   R GK  +       +L + +  Q + + +  +  + + FP++ +    G
Sbjct: 616 VAPENDLLAQKRGGKQVLN-GEMLAMLRIPSQPQADHVAVIGENIKTLIFPLAELPEM-G 673

Query: 719 RNSVGVRGISLAKG 732
           R   GV+  +  +G
Sbjct: 674 RG-KGVKLQNYKQG 686



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 47/164 (28%), Gaps = 15/164 (9%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD++    +V     D          +                           +E
Sbjct: 535 KFKEGDKL--GFLVPAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAE 592

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                    +  +L  S+ G+G      D     R GK +           G ++A+  +
Sbjct: 593 IINVVAHEPDAKLLIASKAGYGFVAPENDLLAQKRGGKQVLN---------GEMLAMLRI 643

Query: 848 NDN---DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                 D + ++ +    +  P+ E+    R  KGV + +  + 
Sbjct: 644 PSQPQADHVAVIGENIKTLIFPLAELPEMGR-GKGVKLQNYKQG 686


>gi|78183589|ref|YP_376023.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. CC9902]
 gi|78167883|gb|ABB24980.1| DNA topoisomerase IV subunit A [Synechococcus sp. CC9902]
          Length = 806

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 273/808 (33%), Positives = 420/808 (51%), Gaps = 73/808 (9%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           MQ SYL YA++VI+GRA+PD RDGLKPV RRIL+ M ++G+  ++ Y KCAR+ G+V+GK
Sbjct: 1   MQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMQELGLTPDRPYRKCARVVGDVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLL 143
           YHPHG+ A+YDAL R+ Q ++ R  L++G GNFGSVD DPPAA RYTE RL   AH  LL
Sbjct: 61  YHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPPAAMRYTETRLAPIAHQALL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           +++G DTVDF  N+DGS QEP VL A+ P +L+NG  GIAVGMAT+IP HNLGEVVDG +
Sbjct: 121 EEIGDDTVDFASNFDGSQQEPTVLPAQLPFLLLNGCSGIAVGMATSIPPHNLGEVVDGLI 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD- 262
           A+I  P +  + L+E+I GPDFPTG  +L  +G+++ Y  GRGSI +RGV+H E+     
Sbjct: 181 ALIRQPGLSDERLLELIPGPDFPTGGEVLLSSGLQDTYLQGRGSIPMRGVAHTEEVQLGK 240

Query: 263 ----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
               R  +VVTE+PYQ++KA  +EK+AE V + +I  IAD+RDESDR G RVV+EL+R A
Sbjct: 241 GRHKRNAVVVTELPYQLSKAGWIEKLAESVNDGKIGGIADIRDESDRDGMRVVVELRRDA 300

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
             + +L  L R T+LQS F   ++AL   +P++ +L  +L+ F+ +RE  ++RRT + L 
Sbjct: 301 EPEKVLKDLQRRTALQSNFGAILLALVNGQPQQLSLRQLLQTFLDYRELTLIRRTSHALR 360

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR  V+ GL  A+ NL  V+ +I+ + +  +AR  LM R                  
Sbjct: 361 KTEDRLEVVEGLITALNNLQAVIAMIQEAKDAASARASLMVR------------------ 402

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                   + L+E Q  A+L + L RLTGL ++ +R E+++L  E +    +L +R +LL
Sbjct: 403 --------LDLNERQADAVLAMPLRRLTGLEQESLRQEVDNLRNEKERLKLLLENRDQLL 454

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV-----KRVPL 553
             +  EL ++K    TPRRTR+VEG   +  E    +      +            R+ +
Sbjct: 455 DAMVAELKTLKKRFSTPRRTRLVEGGDALIAERAASQRPNTELLRQQALAALPGDGRLLI 514

Query: 554 SVYRAQRRGGKGRSGVVMRDED--------FVTDLFIVSTHTSVLFFSSLGF---VYKEK 602
                 +       G +   +             +  +     +L  S+ G    V  E 
Sbjct: 515 QADGQVKIVTPQVLGRLHFGDPCPVSDAPSPARVILPIEPPPRLLAISANGRVALVRWEF 574

Query: 603 VWRLPIGSPQARG-----KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             + P    +        + ++ I  L   E     +     +                 
Sbjct: 575 AGQQPGALERFLPSGLEGEPIVAIAPLPMQESSDLSLGLLSSDG--------------RF 620

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-AIRVF 716
           +R  L++ ++++      +KL    ++ +   C + +D++L + +G+ +R PI+  +   
Sbjct: 621 KRLPLAEVLELSGRATSVVKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPINEDVLPR 680

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR + G   + L  G+ +I               +   +     R  ++          
Sbjct: 681 MGRLAQGPMTMRLLPGEHLIGALC-----PTKPTALLVSEQGRLARIDLTSIRSSQRGDL 735

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVS 804
              +++     +R   L      I  VS
Sbjct: 736 GSMAIQLVGDTDRITGLTEASGLIGMVS 763



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 810 KRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           KR    +   +S R+        V K+ +   L A    +++  +ILVSD G ++R+P+N
Sbjct: 621 KRLPLAEVLELSGRATS------VVKLKDGVQLKAAVICHEHHDLILVSDIGRMLRLPIN 674

Query: 869 E--IRIASRATKGVVIFSTAKDERVVSV 894
           E  +    R  +G +       E ++  
Sbjct: 675 EDVLPRMGRLAQGPMTMRLLPGEHLIGA 702



 Score = 42.5 bits (98), Expect = 0.33,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 10/169 (5%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +G+ ++++A +   ++              +R  ++   E      +   ++  +  +  
Sbjct: 591 EGEPIVAIAPLPMQESSDLSLGLLSSDGRFKRLPLAEVLELSGRATSVVKLKDGVQLKAA 650

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINE-IGALVAVFPV 847
                    IL VS+ G   R    +       R  +G     +      IGAL    P 
Sbjct: 651 VICHEHHDLIL-VSDIGRMLRLPINEDVLPRMGRLAQGPMTMRLLPGEHLIGALCPTKPT 709

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSVE 895
                 +LVS++G L R+ +  IR + R   G +        +R+  + 
Sbjct: 710 A-----LLVSEQGRLARIDLTSIRSSQRGDLGSMAIQLVGDTDRITGLT 753


>gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2]
 gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2]
          Length = 750

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 246/743 (33%), Positives = 363/743 (48%), Gaps = 60/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +         G   V++ + ++  YL YA++ I+GRA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKTVSPPAPPSSGGTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 61  QILRLDPGTAFKKCAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D+VDFR NY G  QEPVVL +  PN+L NG  
Sbjct: 121 DGDGAAAYRYTEARMTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGAQ 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HNL E+ D  + ++ + D   D L+    GPDFPTG V +  +  I  
Sbjct: 181 GIAVGMATSIPPHNLAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIAE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRGS+ +R     E+ +     IVVTEIPY V K+ ++EKIAEL+ +K++  +AD+
Sbjct: 241 TYRTGRGSLRLRARWSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVADI 300

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGI 357
           RDES     RVVIE K R     +++  L+R T L++ F VN+  L     P   +    
Sbjct: 301 RDESAE-DVRVVIEPKSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEA 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R EV+VRR ++ L +   R  +L G+ I   NLDEV+RIIR    P+      
Sbjct: 360 LQQWLDHRREVLVRRARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEPKE----- 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          LS++Q   +L+ RL  L  L    I+ E 
Sbjct: 415 ------------------------RLQLAFSLSDMQVNYVLDTRLRSLRRLEEMQIQREH 450

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMEDE-- 530
            +L  E  E   +L+  +R    I  E+  +K +         RRT   E     E +  
Sbjct: 451 EALEKEKLELEALLADEARQWKKIAAEIRDLKKKYGPETKLGRRRTSFAEAPDVGEIDFA 510

Query: 531 -DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
              + RE + V VS  G++        RA +      SG+  + +D +   F   T + +
Sbjct: 511 SAMVEREPVTVVVSEKGWI--------RALKGQVADLSGLQFKGDDSLHISFFAETTSKI 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  S  G ++     +LP G  Q           L     I                 ++
Sbjct: 563 LVLSGDGKIFTLDAGKLPGGRSQGE--------PLRLLADIGEGESVAAVFPYAPGQKML 614

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G        + I   R GK+ + ++    I  +      + + +  +  + + FP
Sbjct: 615 VATDDGRGFVVSQDEMIGGTRKGKLLLNVEKP-GIAKIIVPADGDHVAIIGENRKLLVFP 673

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +   A     GVR      G
Sbjct: 674 LDQVPEMA--RGKGVRLQKYRDG 694


>gi|154482536|ref|ZP_02024984.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
 gi|149736561|gb|EDM52447.1| hypothetical protein EUBVEN_00203 [Eubacterium ventriosum ATCC
           27560]
          Length = 801

 Score =  574 bits (1478), Expect = e-161,   Method: Composition-based stats.
 Identities = 259/791 (32%), Positives = 409/791 (51%), Gaps = 80/791 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M Q+G+ ++K + K
Sbjct: 3   EQIIKTEYSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYAMDQLGLNYDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  +AQD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLAQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L+K    + L DL KD VDF PN+D + +EP VL  R PN+LVNG  GIAVGMATNIPT
Sbjct: 123 KLKKFTQDVYLADLDKDVVDFVPNFDETEKEPSVLPVRVPNILVNGAEGIAVGMATNIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD  +A +DN +I  + L++I+ GPDFPTG ++  ++ +K+ Y  G G + +RG
Sbjct: 183 HNLGEVVDAVIAYMDNNNITTEELLQIMPGPDFPTGGIVANKSDLKDIYENGTGKLKLRG 242

Query: 253 VSHIEKTS-GDREQIVVTEIPYQVNKA---AMLEKIAELVREKRIVDIADLRDESDRQGY 308
               EK    +++++V+TEIPY +  A     +  + +LV  K+  DI D+ + SD  G 
Sbjct: 243 KLEFEKGKGREKDKLVITEIPYTMIGAGIGKFISDVIDLVETKKTTDIVDISNGSDENGI 302

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+ELK+GA  + + N LY+ T L+  F VNM+A+   +PE   L  I+K  V F+ E+
Sbjct: 303 RIVLELKKGADVEKLKNILYKKTKLEDTFGVNMLAIADGRPEVMGLKSIIKYNVDFQYEL 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             R+   LLNKA ++  +  GL  A   +D ++ IIR S + +  +  L+    +     
Sbjct: 363 AQRKYTTLLNKALEQKEIKEGLIKATNIIDLIIEIIRGSQSQKQVKACLVHGKTD----- 417

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              D+   +  +    G +  +E Q +AILELRL++L GL    ++ E   L  +I +  
Sbjct: 418 ---DIKFKNPESEILAGNLSFTERQAQAILELRLSKLIGLEILALQKEYEELMDKIGQYE 474

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           DIL +R  +   IK++L ++K E   PR+T I +G   + DE+  V +++V      GY 
Sbjct: 475 DILENRKTMTKTIKKDLKAIKKEYALPRKTLIEDGKEAVFDENAFVEQEVVFVQDKFGYS 534

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K +  + +                        F      S+  F+  G V++ KV  +P 
Sbjct: 535 KLLDPAAFDRNIES----------VTKENKYYFRCMNTDSICIFTDNGNVHQIKVSAIPT 584

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G  + N   L         +          +  ++F TK+G ++    ++F   
Sbjct: 585 KKVREKGIPIDN---LGNYSSQGESIVTLVSFDMIKDKKLLFTTKNGMIKLVDGNEFETN 641

Query: 669 NRSGKIAMKLDSRDEILSVETCT--------------------QEND------------- 695
                +A KL   DE++SV+                         +D             
Sbjct: 642 R-KTMLATKLGKDDEVVSVKITRVSNKQISEEQVEEMPVMLTGGSDDFEPLDFEQMELFD 700

Query: 696 -------------------ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                              ++L T+ G  +RFP+  +     + ++GV+GI L  GD V 
Sbjct: 701 TTASMDVGQEQELQYTREILVLQTEEGIFLRFPLKEVPEMK-KATLGVKGIKLNDGDFVS 759

Query: 737 SMAIVLHADAD 747
            + ++   D +
Sbjct: 760 KVYLLDTGDNE 770



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 61/208 (29%), Gaps = 58/208 (27%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            D    +   +SA       +         + S +G           +K++ +L  ++ G
Sbjct: 569 TDNGNVHQIKVSAIPTKKVREKGIPIDNLGNYSSQGESIVTLVSFDMIKDKKLLFTTKNG 628

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF------------PVND------ 849
             K     +F  +NR     +    +K+ +   +V+V              V +      
Sbjct: 629 MIKLVDGNEF-ETNR-----KTMLATKLGKDDEVVSVKITRVSNKQISEEQVEEMPVMLT 682

Query: 850 --NDQ--------------------------------IILVSDKGTLIRVPVNEIRIASR 875
             +D                                 ++L +++G  +R P+ E+    +
Sbjct: 683 GGSDDFEPLDFEQMELFDTTASMDVGQEQELQYTREILVLQTEEGIFLRFPLKEVPEMKK 742

Query: 876 ATKGVVIFSTAKDERVVSVERIRESEIV 903
           AT GV        + V  V  +   +  
Sbjct: 743 ATLGVKGIKLNDGDFVSKVYLLDTGDNE 770



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 8/171 (4%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++        +   +++      +   G ++ +     D ++E    E +     +    
Sbjct: 505 LIEDGKEAVFDENAFVEQEVVFVQDKFGYSKLLDPAAFDRNIESVTKENKYYFRCMNTDS 564

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA-LVAVFPVND--NDQIILV 856
           I   ++ G   +             KGI   ++   +  G  +V +   +   + +++  
Sbjct: 565 ICIFTDNGNVHQIKVSAIPTKKVREKGIPIDNLGNYSSQGESIVTLVSFDMIKDKKLLFT 624

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESEIVDE 905
           +  G +  V  NE    +R T         KD+ VVSV   R+   +I +E
Sbjct: 625 TKNGMIKLVDGNEF-ETNRKTMLAT--KLGKDDEVVSVKITRVSNKQISEE 672


>gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 743

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 238/731 (32%), Positives = 385/731 (52%), Gaps = 58/731 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +    I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    
Sbjct: 4   DTSGHIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSG 63

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RY
Sbjct: 64  FKKCARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRY 123

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + A  LL+ +  D+VDFRP YDG  QEPVVL A +PN+L NG  GIAVGMAT+I
Sbjct: 124 TEARMTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSI 183

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN+GE+    + +I +PD  +  LME + GPDFPTG  ++  RT +  AY TGRGS+ 
Sbjct: 184 PPHNVGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMR 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           IR    +E+      Q+VVTEIPYQV K+ ++E+IA+L+ +K++  + D+RDES     R
Sbjct: 244 IRARWSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTT-DIR 302

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREE 367
           +V+E K RG   +V++  L+R T+L+S F++NM  L   +     +L  +L+A++  R +
Sbjct: 303 LVLEPKSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHD 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+++ L     R  +L G      NLDEV+RIIR   +   A+  LM         
Sbjct: 363 VLQRRSRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDD---AKAGLMA-------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  L+E+Q  +IL +RL  L  L   +IR E  +L  E  + 
Sbjct: 412 ------------------TFSLTELQAESILNMRLRSLRRLEELEIRKEHAALTAERGDL 453

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +L S       I +E+ +++          RR+ +      +     + + RE + + 
Sbjct: 454 TALLGSEPLRWKKITEEVKAIRKAFGAGALGTRRSELAAPPRAIELSAIEAVEREPLTLI 513

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        +  +  G   +    ++ D         +   +  F++ G  +  
Sbjct: 514 LSAKGWV--------KTLKGHGIDPTAQKFKEGDGFRLAVECQSTDRLCVFATDGRAFTL 565

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP G     G+ +  ++ L+  E +  + P  E          + A+  G     +
Sbjct: 566 RAADLPRGRGD--GQPIRLLIELSNDEDLVAVFPVREGTRH------LLASSAGRGLVIR 617

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             D +   R+GK  + L    E   +    + + +++  +  + + FP++ +   A    
Sbjct: 618 DEDLVAEKRTGKQVLNLK-DAESARICLPVEGDHVVVLGQNRRMLVFPVAQLPEMA--RG 674

Query: 722 VGVRGISLAKG 732
           +GV      +G
Sbjct: 675 LGVALQKYKEG 685


>gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 749

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 246/742 (33%), Positives = 371/742 (50%), Gaps = 62/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT   I   +     I  V     ++  YL YA++ I+ RA+PD+RDGLKPVHRRIL+ M
Sbjct: 1   MTTKPILPGDGP---IEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     Y+KCA+I GEVMG YHPHGN AIYDALAR+AQD+++R  L++GQGNFG++
Sbjct: 58  RELRLNPEGGYIKCAKIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAAERYTE R+ + A  +L+ + +DTV+FRPNYDG  +EPVVL A +PN+L NG  
Sbjct: 118 DGDNPAAERYTEARMTETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HN+ E+    + +I +P+  ++ L+E++ GPDFPTG  ++  R  I  
Sbjct: 178 GIAVGMATNIPPHNVDELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E T+    QIVVTEIPY V KA ++EKIAEL+ +K++  + D+
Sbjct: 238 AYKTGRGGFRVRARWSKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDV 297

Query: 300 RDESDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGI 357
           RDES  +  R+V+E K       +++  ++R + L+    +NM  L+  +      L  +
Sbjct: 298 RDESAEE-IRLVLEPKTRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDV 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++  R EV+VRR+ + L K   R  VL G  IA  N+DEV+RIIR   +P+      
Sbjct: 357 LWQWLEHRIEVLVRRSTHRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKA----- 411

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          LS+VQ  AIL LRL  L+ L   +IR+E 
Sbjct: 412 ------------------------KLIAKFKLSDVQAEAILNLRLRSLSRLEEVEIRSEH 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--E 530
           + L  E +E   +L S       +  E+ + ++          RR+   +      D   
Sbjct: 448 DKLSKERRELKQLLKSEELQWEHVSNEVKTTREAYSKKTAIGRRRSTFADAPEVEVDLAT 507

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + +E + V +S  G+V        R  +      S +  +  D +       T   ++
Sbjct: 508 ALVEKEPVTVILSEKGWV--------RTLKGHQDDLSKLDFKQGDALKRAIKALTTDKLV 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +  +   LP G  +  G+ +  ++ L +   I             +   +V 
Sbjct: 560 LLTTNGKFFTLEANALPGG--RGHGEPVRLMIDLEENHDI-----VEVFVHDPSRKLLVA 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  G        + I   R GK  + +   DE   V    + + +       + + F I
Sbjct: 613 STA-GYGFIVPEEEVIASTRKGKQVLNVSEPDEAR-VCVPAEGDYVATVGDNRKLLVFKI 670

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +         GV       G
Sbjct: 671 DEVNEMT--RGKGVILQRFKDG 690


>gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
 gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614]
          Length = 750

 Score =  573 bits (1477), Expect = e-161,   Method: Composition-based stats.
 Identities = 248/742 (33%), Positives = 369/742 (49%), Gaps = 62/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +           GI S+++ + ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MGKETTPPP----SGIESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  LI+GQGNFG+V
Sbjct: 57  RLLKLDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD L ++ VDFR  YDG  +EP+VL   +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARMTDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I NP+ +   L+E I+GPDFPTG +++   G I+ 
Sbjct: 177 GIAVGMATSIPPHNAFELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIRE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E     +  IVVTEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 237 AYETGRGSFRVRARWEVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGIL 358
           RDES      V++   R   A++++  L++ T L++ FS+NM  L+  K      L  +L
Sbjct: 297 RDESAEDIRIVLVPRSRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR++Y L +   R  VL G  +A  NLDEV+RIIR    P+       
Sbjct: 357 REWLDHRKEVLIRRSEYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKA------ 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  LS+VQ  AIL +RL  L  L   +IR E +
Sbjct: 411 -----------------------ELMQTFELSDVQAEAILNMRLRSLRKLEEMEIRKEHD 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
            L  E  +   +L S +R    I +E+  +            RRT   E          +
Sbjct: 448 KLSAEKDDLTKLLGSDARQWTKISKEIADISKVYGPETEIGKRRTDKSEAPETDLIDIQQ 507

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      SGVV +  D +       T   +L
Sbjct: 508 AMIEKEPITVIISEKGWI--------RAMKGHQTDLSGVVFKQGDKLKLSLHAETTDKIL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G  +     RLP G              +     +                 ++ 
Sbjct: 560 LFSTGGKFFTLGADRLPGGRGHGE--------PIRLMVEMDEAQDVVNAFVHKPGRNLLL 611

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT           D +   R GK  + L +  E       +  + + +  +  + + FP+
Sbjct: 612 ATTEARGFVVSEDDVVANTRKGKQVLNLSAPAEASICVEASG-DHVAIIGENRKLLVFPL 670

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             I    GR   GVR      G
Sbjct: 671 VQIPQM-GRG-RGVRLQRYRDG 690


>gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 751

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 237/742 (31%), Positives = 371/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG +I+     I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+  + P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P+       
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 -----------------------------DLTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DE 530
            L  E  E   +LSS  +    +  E+  VK +         RRT+  +     E    +
Sbjct: 452 ELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPETDEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTAALTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G        +I  +  +Q                 +   ++ 
Sbjct: 564 IVTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAV-------LTAFVHDPSRKQLIV 616

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  GN      ++ +   R GK  M +   +E   +   +  + + +  +  + + FP+
Sbjct: 617 STA-GNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSG-DHVAVVGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +   +     GVR      G
Sbjct: 675 AQVPEMS--RGKGVRLQRYKDG 694


>gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC
           23769]
          Length = 740

 Score =  573 bits (1476), Expect = e-161,   Method: Composition-based stats.
 Identities = 245/733 (33%), Positives = 384/733 (52%), Gaps = 61/733 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  + D +   YL YA++ I+ R++PD+RDG+KPVHRR++F M Q+ ++    + KCA
Sbjct: 10  VENTKLVDALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTSGFKKCA 69

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+A++Y+AL R+AQD+++R  L+EGQGNFGSVDGD  AA RYTE RL
Sbjct: 70  RVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMRYTEARL 129

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL+ +  D+VDFRP YDG   EPVVL A +PN+L NG  GIAVGMAT+IP HN+
Sbjct: 130 TEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHNV 189

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVS 254
           GE+    + +I +PD+ +  L+E++ GPDFPTG +I   R  I  AY TGRGS  IR   
Sbjct: 190 GEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSFRIRARW 249

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+      QIVVTEIPYQV K+ ++E++A+L+ +K++  + D+RDES     R+V+E 
Sbjct: 250 EVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESSA-DIRLVLEP 308

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEVVVRR 372
           K RG   +V++  ++R T L+S F +NM  L   +     +L  +L+A++  R +V+VRR
Sbjct: 309 KSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLVRR 368

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L+    R  +L G      NLDEV+RIIR   +   AR  LM              
Sbjct: 369 TRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIREEDD---ARASLMA------------- 412

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q  ++L +RL  L  L   +IR E  +L  E    L ++ 
Sbjct: 413 -------------AFDLSELQAESVLNMRLRSLRRLEETEIRKEHAALTEERAGLLALME 459

Query: 493 SRSRLLGIIKQELLSVKDELD----TPRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLG 546
             S     I  E+  ++ +        RR+ +     +++    +   RE + V +S  G
Sbjct: 460 KESLRWKHITSEIKGIQKKFGGGTLGARRSTLAAPPAEVDISAALPVEREPLSVILSQKG 519

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        R  R  G        ++ D +  +    +   +  F++ G  +  +   L
Sbjct: 520 WI--------RTVRGHGVDPEAQKFKEGDGLRLIVECQSSDRLCCFATDGRAFTLRAADL 571

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G     G+ L  ++ L+  E I TI P  +D         + A+  G     +  D +
Sbjct: 572 PRGRGD--GQPLRLMIELSNEEDIITIFPVTQDARR------LLASSAGRGMIVREEDMV 623

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+GK  + L   +           + +L+     + + F ++ +        +GV  
Sbjct: 624 AEKRTGKQVLNLKEGESAQVCALAQG-DHVLVIGSNKRMLVFALTQLPEMT--RGLGVAL 680

Query: 727 ISLAKG---DQVI 736
               +G   D V+
Sbjct: 681 QKYKEGHLRDAVV 693


>gi|228983129|ref|ZP_04143388.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
 gi|228777312|gb|EEM25620.1| DNA topoisomerase [Bacillus thuringiensis Bt407]
          Length = 740

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 400/757 (52%), Gaps = 28/757 (3%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I ++S + EM++S++ YA+ V+  RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K 
Sbjct: 4   KIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAYKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI GEV+GKYHPHG++A+Y+++ + AQD+     LI+G GNFGSVDGD  AA RYTE R
Sbjct: 64  ARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGDSAAAMRYTEAR 123

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  ++ DL K  VDFR N+D S +EPVVL A+ PN+LVNGG GIAVGMA   P H 
Sbjct: 124 LSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKTPPHG 183

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           +  VVD  +A  D  DID+++L++II  PD+P+G +I  +  +++ Y TG G  VIR   
Sbjct: 184 VNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGGIITNKNELRDLYRTGIGKAVIRAKI 243

Query: 255 HIEKTSGDREQIVVTEIPYQ--VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            IE     R+ +VV EIPY    +K  +  K+  +V EK++ +I ++ DESD+ G R+V+
Sbjct: 244 DIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDGIRIVL 303

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E+K+G   D +LN+LY  T LQS  S   + L    P    L    K +  F++E+  +R
Sbjct: 304 EVKKGVDIDNLLNKLYSKTPLQSSESYQYLVLVNGVPTTINLKDYCKHYFDFQKEITRKR 363

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +YLL+KA+ R  +L GL  A   +D ++ ++R +   + A+  LM+ +  +        
Sbjct: 364 YEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTES-------- 415

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           +   +            +E Q +AIL++RL +L GL  + +  E   +  E++E   +L 
Sbjct: 416 ISFKTKKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLG 475

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
           S   +L +IK+ L   K +    RRT I E       E+    ED+ V +   GY     
Sbjct: 476 SEKEMLKVIKKYLRGFKKDFGRERRTEIQEKKTIEYVEEIK-EEDVWVLIDKFGY----- 529

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
                 +                      +    + +  F++ G +Y+ K+  +P    +
Sbjct: 530 -----TKSVDTISVERSSEETLSEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIK 584

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G  +  +  + + E    I    E         V+  TK G +++   S+ I    S 
Sbjct: 585 DKGVPIQRLGKMKKNEYPLYITTNTEL----ETERVIMLTKTGLIKQTLCSELISSR-SV 639

Query: 673 KIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            +A KL+  DE++ +    + + D+L+ +K G  +RF I+ I V   +N+ GV+ +SL +
Sbjct: 640 VVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLR-KNAKGVKAVSLME 698

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            D +  + I+   + D  +       +S   R   G 
Sbjct: 699 EDVIEGVYILNENNKDVKQLNGKQIELSKVERKTRGK 735



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 58/112 (51%), Gaps = 7/112 (6%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-ND 851
            +L+ + ++ +++ G  K+T   +  IS+R          +K+ E   ++ + P+N+ ++
Sbjct: 609 TELETERVIMLTKTGLIKQTLCSEL-ISSR-----SVVVATKLEEDDEVIQITPINEVDE 662

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ S KG ++R  +NEI +  +  KGV   S  +++ +  V  + E+   
Sbjct: 663 DVLVFSKKGYILRFSINEIPVLRKNAKGVKAVSLMEEDVIEGVYILNENNKD 714



 Score = 45.6 bits (106), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 26/240 (10%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V   K G  +   +        S +   +                + + + T  G+  + 
Sbjct: 522 VLIDKFGYTK--SVDTISVERSSEETLSEYKQE------ILTKNTSKLSVFTNQGRLYQI 573

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            ++ I         GV    L K  +      +        ER+  +      ++ +  +
Sbjct: 574 KLADI-PKVKIKDKGVPIQRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSE 632

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                S+   + +E +    +   +   ++ +L  S+KG+  R S  +  +  ++ KG++
Sbjct: 633 LISSRSVVVATKLEEDDEVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVK 692

Query: 829 ATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A  + + + I     V+ +N+N+    Q+      G  I     E+    R T+G    +
Sbjct: 693 AVSLMEEDVIE---GVYILNENNKDVKQL-----NGKQI-----ELSKVERKTRGKKGIN 739


>gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
 gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193]
          Length = 781

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 265/740 (35%), Positives = 398/740 (53%), Gaps = 40/740 (5%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++    +D    +   I    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MSDTQDDTDAPMPQNGEILE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 59

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 60  AMNRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFG 119

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ L +D+VDFR NYDG   EP VL A +PN+L NG
Sbjct: 120 NIDGDNPAASRYTEARMTFIAEAMLEGLNEDSVDFRDNYDGRLTEPAVLPATFPNILANG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGI 237
             GIAVGMATNIP HN+ E++D C+ +I +P  D D L++ + GPDFPTG +I   R  I
Sbjct: 180 AAGIAVGMATNIPPHNIAELIDACIHLIKSPGADDDTLLKYVPGPDFPTGGIIVEPRDNI 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 240 AKAYRTGRGSFRLRCTHEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 299

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
           D+RDES     R+V+E K +    DV++N ++R + L+  FS+NM  L +G  P+  ++ 
Sbjct: 300 DIRDESAE-DIRIVLEPKSKNVDPDVLMNMMFRNSDLELRFSLNMNVLIDGVTPKVCSMK 358

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+AF+  R +V+ RR++Y + K   R  VL G  IA  NLD V+ IIR+  +P++A  
Sbjct: 359 EVLRAFLDHRRDVLRRRSEYRMGKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKSA-- 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            LM+ +W     +      ++S Y   + G   LSEVQ  AIL +RL  L  L   ++  
Sbjct: 417 -LMRENWGLDHPRAY----EESDYVTPAPGEGELSEVQAEAILNMRLRSLRRLEEVELTK 471

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED- 529
           E ++L  E    +++L S       I ++L + K +         RR+R  E     E  
Sbjct: 472 ERDALREERAGLVELLGSDDLQWSKITEQLRATKKQFGKDYVGGARRSRFAEAGEVEEVP 531

Query: 530 -EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  I RE + V  S +G++        RA          +  +D D    +F   T   
Sbjct: 532 LEAMIDREPITVVCSQMGWI--------RAMTGHIDLNRELKFKDGDGARFIFHAETTDR 583

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F S G  Y      LP G  +  G+ L  ++ L     I  I+             +
Sbjct: 584 LLVFGSNGRFYTVSAANLPGG--RGMGEPLRLMVDLPNEVEIVDIL------IHNPEGKL 635

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN       D +   R+GK  + +   D        T  + + + ++ G+ + F
Sbjct: 636 LVASSAGNGFICAEKDIVAQTRTGKQVLNVKDDDRAQICIPVTG-DHVAIVSENGKFLVF 694

Query: 709 PISAIRVFAGRNSVGVRGIS 728
            +  +         GVR   
Sbjct: 695 SVEEMPELT--RGKGVRLQK 712



 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 52/173 (30%), Gaps = 12/173 (6%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR   G   +  R +    GD       + HA+      +             +      
Sbjct: 551 IRAMTGHIDL-NRELKFKDGD---GARFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRG 606

Query: 773 TSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                   V+     E    L    E  +L  S  G G   +  D     R+GK +    
Sbjct: 607 MGEPLRLMVDLPNEVEIVDILIHNPEGKLLVASSAGNGFICAEKDIVAQTRTGKQVLNVK 666

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                +I       PV   D + +VS+ G  +   V E+   +R  KGV +  
Sbjct: 667 DDDRAQI-----CIPVT-GDHVAIVSENGKFLVFSVEEMPELTR-GKGVRLQK 712


>gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
 gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10]
 gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107]
          Length = 782

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 259/736 (35%), Positives = 393/736 (53%), Gaps = 38/736 (5%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +   + D      +    +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M +
Sbjct: 6   DDQDTPDSPASGEVLE-PLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMSR 64

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DG
Sbjct: 65  LRLTSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 124

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D PAA RYTE R+   A  +L+ L ++ VDFR NYDG   EP VL A +PN+L NG  GI
Sbjct: 125 DNPAASRYTEARMTFVAEAMLEGLSENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGI 184

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAY 241
           AVGMATNIP HN+GE++D C+ +I  PD   D L+  + GPDFPTG +I+     I  AY
Sbjct: 185 AVGMATNIPPHNIGELIDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAY 244

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS  +R    +E     + QIV+TEIPYQV K+ ++EKIAEL++ K+I  +AD+RD
Sbjct: 245 NTGRGSFRLRCTHEVEDLGRGQWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILADVRD 304

Query: 302 ESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           ES     R+V+E K +    +V++N ++R + L+  FS+NM  L +G  P+  ++  +L+
Sbjct: 305 ESAE-DIRIVLEPKSKNVDPEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLR 363

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           AF+  R +V+ RR+++ ++K   R  VL G  IA  NLD V+ IIR+  +P   +  LM+
Sbjct: 364 AFLDHRRDVLQRRSQHRMDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDP---KAALMR 420

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +W+    +   +    + Y   + G   L+EVQ  AIL +RL  L  L   ++  E ++
Sbjct: 421 ENWSLDHPRAYTE----ADYVSPAIGAGELTEVQAEAILNMRLRSLRRLEEIELVRERDA 476

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDC 532
           L  E    +++L+S       I ++L   K +         RRTR  E     E   E  
Sbjct: 477 LREERAGLVELLASEDLQWSRIAEQLKDTKKQFGKTYEGGPRRTRFAEAGEVEEVPLEAM 536

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I RE + V  S +G++        RA          +  +D D    +F   T   +L F
Sbjct: 537 IDREPITVVCSQMGWI--------RAMTGHIDLGRELKFKDGDGPRFIFHAETTDRLLVF 588

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +S G  Y      LP G  +  G+ L  ++ L     I  I+             ++ A+
Sbjct: 589 ASNGRFYTISASNLPGG--RGMGEPLRLMVDLPNEVEIVDIL------IHNPEGRLLVAS 640

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             GN       D +   RSGK  + +   D        T  + + + ++ G+ + F +  
Sbjct: 641 DAGNGFICAEKDIVAQTRSGKQVLNVKDDDRAKICIRVTG-DHVAVVSENGKFLVFAVEE 699

Query: 713 IRVFAGRNSVGVRGIS 728
           +         GVR   
Sbjct: 700 MPELT--RGKGVRLQK 713



 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 53/173 (30%), Gaps = 12/173 (6%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR   G   +G R +    GD       + HA+      +             +      
Sbjct: 552 IRAMTGHIDLG-RELKFKDGD---GPRFIFHAETTDRLLVFASNGRFYTISASNLPGGRG 607

Query: 773 TSLKNDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                   V+     E    L    E  +L  S+ G G   +  D     RSGK +    
Sbjct: 608 MGEPLRLMVDLPNEVEIVDILIHNPEGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVK 667

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                +I        V   D + +VS+ G  +   V E+   +R  KGV +  
Sbjct: 668 DDDRAKI-----CIRVT-GDHVAVVSENGKFLVFAVEEMPELTR-GKGVRLQK 713


>gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
 gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255]
          Length = 749

 Score =  572 bits (1475), Expect = e-161,   Method: Composition-based stats.
 Identities = 253/742 (34%), Positives = 379/742 (51%), Gaps = 66/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    +L++ ++GPDFPTG +I+     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+   R   H E+ +     IVVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYATGRGAFRTRAKWHREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     RVVIE K R    ++++  L+R T L+S  S+N+  L   K P+   L   
Sbjct: 298 RDESAE-DIRVVIEPKSRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ +   +   R  VL G  IA  N+DEV+RIIR    P+ A    
Sbjct: 357 LREWLDHLRDVLLRRSAHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 413 -------------------------LIKAFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
             L  E+K    +L S +R    + +++ +V+D          RRT   +         +
Sbjct: 448 KDLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKRRTVFADAPEHDLAALE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G+V        R  +   +  S +  + +D +   F   T + +
Sbjct: 508 ESLVEREPVTVVVSDKGWV--------RTLKGHVEDLSNLSFKTDDKLGFAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L Q                      +
Sbjct: 560 LLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQDA------AIVSLFVHTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E     T    + + +     + V FP
Sbjct: 612 IASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNEA-KAITTVAGDQVAVIGTNHKMVVFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           +  +       + G RG+ L K
Sbjct: 671 LDQVPEM----ARG-RGVRLQK 687


>gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
 gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53]
          Length = 767

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 255/741 (34%), Positives = 388/741 (52%), Gaps = 37/741 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   ++    +    + S+   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDDNETAPGPND---VTESLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 58  SRLRLSPTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+  AA  LL+ L +D VDFR NYDG   EP VL A +PN+L NG  
Sbjct: 118 DGDNPAASRYTEARMTAAAEALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HNL E++D C+ +I +P    D+L+  I GPDFPTG  ++     +  
Sbjct: 178 GIAVGMATNIPPHNLHELIDACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 238 AYRTGRGSFRLRAKWEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGIL 358
           RDES      V+    R    ++++  L+R + L+  FS+NM   ++G  P+  +L  +L
Sbjct: 298 RDESAEDVRVVLEPRARSVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R +V+VRR+++ L K   R  VL G  IA  +LD V+ IIR+  +P++A   LM
Sbjct: 358 RAFLDHRRDVLVRRSRHRLGKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSA---LM 414

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
              W    I+   +   D      +D  + L+EVQ  AIL +RL  L  L   ++  E +
Sbjct: 415 AEDWAHPHIRATSEK--DYVGPKATDPEIALTEVQAEAILNMRLRSLRRLEELELIAERD 472

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL--DMEDED 531
           +L  E +  + +L+  +     I  EL   + +         RRT+         +  E 
Sbjct: 473 ALRAERQGIMALLADEALQWARIADELRETRKQFGRTSPGGARRTQFALAADVAYVPIEA 532

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V  S +G+V        RA          +  +D D     F   T   +L 
Sbjct: 533 MIDREPITVVCSQMGWV--------RAMTGHIDLTRDLKFKDGDAARFTFHAETTDKLLV 584

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F + G  Y      LP G  +  G+ L  ++ L     I  I+             +V +
Sbjct: 585 FGANGRFYTVSAANLPGG--RGMGEPLRLMIDLPNEAEIIDILI-----HKPGEKLLVAS 637

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           T  GN       + +   R+GK  + L +    L        + + +  +  + + F I 
Sbjct: 638 T-DGNGFVVPEVEVVAQTRAGKQVLNLGASTARLCKRIA--GDHVAVVGENRKVLVFGID 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +         GVR      G
Sbjct: 695 ELPEMT--RGKGVRLQKYKDG 713


>gi|148377449|ref|YP_001256325.1| DNA topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
 gi|148291495|emb|CAL58881.1| Topoisomerase IV subunit A [Mycoplasma agalactiae PG2]
          Length = 861

 Score =  572 bits (1474), Expect = e-161,   Method: Composition-based stats.
 Identities = 229/810 (28%), Positives = 398/810 (49%), Gaps = 40/810 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +    I   ++   + + +  Y+  VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKKKEQQLNDLLSKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ G+V+GKYHPHG+ +IYDA+ RM Q+W +   L+E  GN GS+
Sbjct: 61  YDLGLQNNKPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + A++++ D+ K+TV F PN+D S +EPVV+    PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A + NP I+L  L +II+GPDFPTG +I G  GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGGIIYGTEGIHEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  G+G I +    ++   S   + I +TEIPY V K+ ++ +I  +V  + +  + +++
Sbjct: 241 FERGKGRITLASRYNVYTDSK-YKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++DR G  ++I L + A  +VI+N L+  T ++  ++ N V ++ Y P+   +  +L A
Sbjct: 300 DQTDRNGINILITLDKEADENVIVNYLFLKTQMRIYYNYNNVVIDNYTPKTLGISALLDA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   +++ ++  ++ L K + R  +++G        D+V+ +IR S N   +++ ++  
Sbjct: 360 YLKHVKDIKIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSEN---SKQGVIDN 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +A                         +  Q  AI ELRL +L+         E   L
Sbjct: 417 LMSA----------------------FDFTLNQATAIAELRLYKLSKTDEHAFLIEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDM 538
             +IK+C  +L+        +      +K +    RRT I    +   +  ED +  E +
Sbjct: 455 EEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRARRTSIENEQIKASINQEDLVKEEQV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K+V   +Y +        +   ++++D +      S+   +L F++ G  
Sbjct: 515 FLGISKFGYIKKVSKKIYESN-----LINTYGIKEDDNILFYDNASSLDKLLLFTNFGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L + + L  GE + + +   + +   ++ YV   TK G  +
Sbjct: 570 AYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAIKVSDFD---SSNYVCLFTKKGQGK 626

Query: 659 RNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L +F     S   +AMKL S DE++  +      D+LL TK      +  + +    
Sbjct: 627 KVLLKEFDVSRFSKTFVAMKLKSDDELIGAKLSNGLKDVLLITKNNFASLYSENEV-PIY 685

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  S G +   LA  D++ + A+V   D+     I                  +      
Sbjct: 686 GLKSNGNKACYLANYDELSAFAVVSSNDS--VVLINANNRAKVVNVSEITKVSKANKGVA 743

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKG 807
             +     S  +  +       IL V+ +G
Sbjct: 744 LFAKSRTNSPIKQCDSLQASSKILIVNNQG 773



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 91/254 (35%), Gaps = 15/254 (5%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              +++        +  +K G +++     +     +      +   D IL  +  +  +
Sbjct: 502 SINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINT---YGIKEDDNILFYDNASSLD 558

Query: 695 DILLTTKLGQ-----CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            +LL T  G        +   S  + F    S  V    L  G++++S   V   D+   
Sbjct: 559 KLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFV---DLTSGEELVSAIKVSDFDSSNY 615

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
             +   K    +  L   D    +       ++ +  E    +L    + +L +++  F 
Sbjct: 616 VCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLK-SDDELIGAKLSNGLKDVLLITKNNFA 674

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S  +  I      G +A  ++       L A   V+ ND ++L++       V V+E
Sbjct: 675 SLYSENEVPIYGLKSNGNKACYLA---NYDELSAFAVVSSNDSVVLINANNRAKVVNVSE 731

Query: 870 IRIASRATKGVVIF 883
           I   S+A KGV +F
Sbjct: 732 ITKVSKANKGVALF 745


>gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
 gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b]
          Length = 814

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 265/782 (33%), Positives = 398/782 (50%), Gaps = 72/782 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E   +      +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDLIDDGAEPATEFAEP--LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RELRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L ++ VD+R NYDG+ +EP+VL A +PN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTAVAEALLDGLNENAVDYRDNYDGTLREPIVLPASFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+ E+VD C+ +I  PD   D L+  I GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNISELVDACLHLIKVPDARDDTLLNYIPGPDFPTGGVIVEPRENIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R    +E     + QIVVTEIPYQV K+ ++EK+AE+++ K++  +AD+
Sbjct: 239 AYRTGRGAFRLRCKWEVEDLGRGQWQIVVTEIPYQVQKSKLVEKLAEVIQTKKVPILADI 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R+V+E + +    +V++  LYR + L+  FS+NM  L +G  P+  +L  +
Sbjct: 299 RDESA-DDVRMVLEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA---- 413
           L+AF+ FR EV+ RR+++ + K  +R  VL GL  A  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDFRREVLERRSRHRMAKIDNRLEVLQGLITAFLNLDRVIEIIRYDDDPKVALMYE 417

Query: 414 -----RRELMQRSWNASDIKDLIDLIDDSSYTIGSD------------------------ 444
                 +  + R+   +D +  ++ +D +   + +D                        
Sbjct: 418 DWSTPHQASLSRAMTEADYRSPLEGVDIAQLVLIADPEAEAMGVLAESTAATPREVPHSY 477

Query: 445 --GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 LS+VQ  AIL +RL  L  L  D +  E ++L  E     D+L   +     I 
Sbjct: 478 AGRENGLSDVQAEAILNMRLRSLRRLEEDALVRERDTLMEERAGLEDLLEDETLQWDAIS 537

Query: 503 QELLSVKDELDTP----------RRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKR 550
           ++L  VK                RRT+  E     E   E  I RE + V  S +G++  
Sbjct: 538 EQLRQVKKTFGRDYVLDGKNVGVRRTQFAEAGEVEEVPLEAMIDREPITVVCSKMGWI-- 595

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 RA          +  +D D    +F   T   +L F + G  Y      LP G 
Sbjct: 596 ------RAMSGHIDLSRELKFKDGDEGRFVFHAETTDRLLVFGTNGRFYTLSAANLPGG- 648

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ L  ++ L             +         ++ A+  G+       + +   R
Sbjct: 649 -RGMGEPLRLMVDLPNEAE------IVDLFIHRPGAKLLVASSAGDGFVVPEDEVVAQTR 701

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           SGK  + +   D    V T  + + +    +  + + F +  +    GR   GVR     
Sbjct: 702 SGKQVLNVR-DDVRAKVCTKVEGDHVACVGENRKVLIFALDELPEM-GRG-KGVRLQKYK 758

Query: 731 KG 732
            G
Sbjct: 759 DG 760



 Score = 42.5 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 46/176 (26%), Gaps = 10/176 (5%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           IR  +G   +  R +    GD+     +      D                        +
Sbjct: 595 IRAMSGHIDLS-RELKFKDGDE--GRFVFHAETTDRLLVFGTNGRFYTLSAANLPGGRGM 651

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                      N +E     +      +L  S  G G      +     RSGK +     
Sbjct: 652 GEPLRLMVDLPNEAEIVDLFIHRPGAKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRD 711

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
               +    V      + D +  V +   ++   ++E+    R  KGV +      
Sbjct: 712 DVRAK----VCTKV--EGDHVACVGENRKVLIFALDELPEMGR-GKGVRLQKYKDG 760


>gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
 gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis
           ATCC 49957]
          Length = 745

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/734 (33%), Positives = 372/734 (50%), Gaps = 61/734 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + + +    E   +    + D +   YL YA++ I  R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MPDDLTTL--PEGGEVRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCARI G+VMGKYHPHG+AAIYDA+ R+AQ+++ R  L+EGQGNFG++
Sbjct: 59  HQLRLDPAAGFKKCARIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  +L+ + ++ VDFR  YDG  QEP+VL A +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARLTEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN GE+    + +IDNP  +LD L+ ++ GPDFPTG V +     I+ 
Sbjct: 179 GIAVGMATSIPPHNAGELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG   IR     EK      QI+VTEIPYQV K+ ++E+IA+L+ EK++  +AD+
Sbjct: 239 AYATGRGGFRIRARWAEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           RDES     R+V+E K R     V++  L+R TSL++ F +NM  L+    P    L  +
Sbjct: 299 RDES-TDVVRIVLEPKSRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R  V+VRR+++ L     R  +L G  I   NLDEV+RIIR   +P+ A    
Sbjct: 358 LRCWLDHRHVVLVRRSEHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPA---- 413

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+E Q  AIL +RL  L  L   +IR E 
Sbjct: 414 -------------------------LMARFALTETQAEAILNMRLRSLRKLEEMEIRKEH 448

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL--DMEDE 530
             L  E K    +L S  +    I +E+ + +           RR+ +        +++ 
Sbjct: 449 KKLSAEQKSLQALLGSEGKRWKRIAEEIAATRARFGEETELGRRRSTLDAAPAAVVIDER 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +    ++ D +       T   + 
Sbjct: 509 AFVEREMITVILSEKGWI--------RAVKGHLPPETEHKFKEGDRLRAALHAETTDRIC 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  +  K   +P G     G+ +  ++ L   + +                ++V 
Sbjct: 561 LFATNGKCFTLKADAIPRGRGD--GQPVRLMVDLTNEDEV-----VSLFVWRPERKFLVA 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G     K  D     R+GK  + +DS  E        + + + +  +  + + FP+
Sbjct: 614 AS-DGRGFVVKSEDLTAEKRTGKQVLLVDSPVEAAR-LIPAEGDTVAIIGENRKLLVFPL 671

Query: 711 SAIRVFAGRNSVGV 724
             +         GV
Sbjct: 672 EQVPEMV--RGRGV 683


>gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278]
 gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278]
          Length = 750

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 250/742 (33%), Positives = 381/742 (51%), Gaps = 66/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V++ D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKSLIPPEPAE---IHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  ++     I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +V+TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRVRAKWKQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K +     +++  L+R T L+S   +N+  L   K P+   L   
Sbjct: 298 RDESAE-DVRLVIEPKSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +  +R  +L G  IA  N+DEV+RIIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKTFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K   ++L S       + +++ +V+D          RRT   +         +
Sbjct: 448 KNLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKRRTNFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G+V        R  +      S +  + +D +   F     + V
Sbjct: 508 EAFIEREPVTVVVSEKGWV--------RTLKGHVADLSNLQFKTDDQLGQSFFAENTSKV 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L+Q   I          +     ++V
Sbjct: 560 LLFATNGKFYSLDVGKLPGG--RGHGEPIRMFIDLDQDASI-----VSMFVTKGERKFLV 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G     K  D +   R GK  + + +  E  ++ T T  + + +     + V F 
Sbjct: 613 AAS-DGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAICTVTG-DQVAVIGTNHKMVVFG 670

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           +  +       + G RG+ L K
Sbjct: 671 LDQVPEM----ARG-RGVRLQK 687


>gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
 gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4]
          Length = 752

 Score =  572 bits (1474), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/743 (32%), Positives = 377/743 (50%), Gaps = 60/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M    I        G+  + +   ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MGNETIPPQGP--DGVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQ ++ R  L++GQGNFG+V
Sbjct: 59  RLLKLDPGSGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGNV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD L ++ +DFR  YDG  +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARLTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E+ + C  +I NPD ++D L++ I+GPDFPTG  ++     I+ 
Sbjct: 179 GIAVGMATSIPPHNAHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGS  +R    +E     +  +V+TEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 239 AYATGRGSFRVRAKWEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGIL 358
           RDES      V++   R   A +++  +++ T L++ FS+NM  L+G K      +  +L
Sbjct: 299 RDESTEDIRVVLVPRSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR++Y L +   R  VL G  IA  NLDEV+RIIR   +   A+ EL+
Sbjct: 359 REWLDHRKEVLIRRSEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIREEDD---AKAELI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L++VQ  AIL +RL  L  L   +IR E +
Sbjct: 416 --------------------------RTFSLTDVQAEAILNMRLRSLRKLEELEIRKEHD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
            L  E  E   +L S +R    I +E+  +            RRT   E          +
Sbjct: 450 KLTKEKDELTKLLGSDARQWTRISKEIAEISKAYGPETELGKRRTEQAEAPDHDLGDIQQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      S +  +  D +   F   T   +L
Sbjct: 510 AMIEKEPITVIISEKGWI--------RALKGHQSDLSTLSFKQGDALKLSFHAETTDKIL 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G  +      LP G  +  G+ +  ++ +++ + +                 ++ 
Sbjct: 562 VFSTGGKFFTLSAANLPGG--RGHGEPIRLMVEMDEAQDVVCAF------VHKAGRKLLI 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           ++           D +   R GK  + L +  E          + + +  +  + + FP+
Sbjct: 614 SSNEARGFVVGEDDVVANTRKGKQVLNLTAPAEATIC-VEADGDHVAVIGQNRKLLVFPM 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGD 733
           + I         GVR      GD
Sbjct: 673 AQIAQMT--RGRGVRLQRYRDGD 693


>gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
 gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040]
          Length = 782

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 258/741 (34%), Positives = 388/741 (52%), Gaps = 41/741 (5%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+ +      E    G     +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+
Sbjct: 1   MTDIVDDPTSPEMPANGELREPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG
Sbjct: 61  AMSRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD PAA RYTE R+   A  +L+ LG+D VDFR NYDG  QEP VL A +PN+L NG
Sbjct: 121 NIDGDNPAASRYTEARMTFIAEAMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-I 237
             GIAVGMATNIP HN+ E++D CV +I  P+   D L++ + GPDFPTG  I+     I
Sbjct: 181 ASGIAVGMATNIPPHNISELIDACVHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS  +R    IE     + Q+VVTEIPYQV K+ ++EKIAEL++ K++  +A
Sbjct: 241 AQAYRTGRGSFRLRAKHEIEDLGRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILA 300

Query: 298 DLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLI 355
           D+RDES     R+++E K +    +V++  ++R + L+  FS+NM   ++G  P+  ++ 
Sbjct: 301 DVRDESAE-DIRIILEPKSKNVDPEVLMGLMHRNSDLEVRFSLNMNVLIDGVTPKVCSMK 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-R 414
            +L+AF+  R +V+ RR+++ + K   R  VL G  IA  NLD V+ IIR+  +P+ A  
Sbjct: 360 EVLRAFLDHRRDVLQRRSRHRMAKIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAALM 419

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           RE   R               ++ Y   + G   LSEVQ  AIL +RL  L  L   ++ 
Sbjct: 420 RENWDREHP--------RAFTEAEYVTPAAGDGELSEVQAEAILNMRLRSLRKLEEIELT 471

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED 529
            E ++L  E    +++L S       I ++L   K +         RRT+  E     + 
Sbjct: 472 RERDALREERAGLVELLGSEELQWKKITEQLRETKKQFGKNYEGGARRTQFAEAGEIEDV 531

Query: 530 --EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             E  I RE + V  S +G++        RA          +  +D D    +F   T  
Sbjct: 532 PLEAMIDREPITVVCSQMGWI--------RAMTGHIDLSRELKFKDGDGPRFIFHAETTD 583

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            +L F S G  Y      LP G  +  G+ +  ++ L             +         
Sbjct: 584 RLLVFGSNGRFYTLSAANLPGG--RGMGEPVRLMVDLPNEVE------IVDLFIHNPEGR 635

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++ A+  GN       D +   R GK  + +   DE   +      + + + ++ G+ + 
Sbjct: 636 LLVASDAGNGFVCAEKDIVAQTRGGKQVLNVK-DDERAKICIPVAGDHVAVVSENGKFLV 694

Query: 708 FPISAIRVFAGRNSVGVRGIS 728
           F I  +         GVR   
Sbjct: 695 FAIEEMPELT--RGKGVRLQK 713



 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 21/228 (9%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++    ++    R  + A   +  D  L      +   ++  +++G         IR   
Sbjct: 506 KKQFGKNYEGGARRTQFAEAGEIEDVPLEAMIDREPITVVC-SQMGW--------IRAMT 556

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G   +  R +    GD       + HA+      +             +           
Sbjct: 557 GHIDLS-RELKFKDGD---GPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPV 612

Query: 778 DSSVEGNISEERCQ-ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
              V+     E     +   E  +L  S+ G G   +  D     R GK +      +  
Sbjct: 613 RLMVDLPNEVEIVDLFIHNPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQVLNVKDDERA 672

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           +I       PV   D + +VS+ G  +   + E+   +R  KGV +  
Sbjct: 673 KI-----CIPVA-GDHVAVVSENGKFLVFAIEEMPELTR-GKGVRLQK 713


>gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 441

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 242/466 (51%), Positives = 331/466 (71%), Gaps = 26/466 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ K A  +L D+ K+TVDF  NYD + +EP+VL AR+PN+LVNG  GIAVGMATNIP
Sbjct: 122 EARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R
Sbjct: 182 PHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R V
Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IE+KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVR
Sbjct: 302 IEVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVR 361

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           RT++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +           
Sbjct: 362 RTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK----------- 410

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                            LSE Q++AIL++RL RLTGL RD I++E 
Sbjct: 411 ---------------FKLSERQSQAILDMRLRRLTGLERDKIQSEY 441


>gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
 gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11]
          Length = 750

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/742 (32%), Positives = 372/742 (50%), Gaps = 62/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +         GI  +++ D ++  YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MGQEVTPPP----SGIEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++  + + KCAR+ G+V+GKYHPHG+ A+YDAL R+AQD++ R  LI+GQGNFG+V
Sbjct: 57  RLLKLDPGQGFKKCARVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD L +D VD+R  YDG  +EP+VL   +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARMTDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I NPD ++D L+E I+GPDFPTG +++   G I+ 
Sbjct: 177 GIAVGMATSIPPHNAFELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIRE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRGS  +R    +E+    +  IVVTEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 237 AYATGRGSFRVRARWEVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDV 296

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGIL 358
           RDES      V++   +   A++++  L++ T L++ FS+NM  L+  K      +  +L
Sbjct: 297 RDESAEDIRVVLVPRSKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVL 356

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+ V+VRR+++ L +   R  VL G  IA  NLDEV+RIIR   + +       
Sbjct: 357 REWLDHRKVVLVRRSEHRLGQINHRLEVLAGYLIAYLNLDEVIRIIREEDDAKA------ 410

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                      T  L++VQ  AIL +RL  L  L   +IR E +
Sbjct: 411 -----------------------SLIRTFELTDVQAEAILNMRLRSLRKLEEFEIRKEHD 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL---DMEDE 530
            L  E  +   +L S +R    I +E+  +            RRT   E          +
Sbjct: 448 KLTDEKDQLTKLLGSDARQWTKISKEIGEIAKVYGPETEIGKRRTDKAEAPEADLVDIQQ 507

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      S +  +  D +   F   T   +L
Sbjct: 508 AMIEKEPITVIISEKGWI--------RALKGHQADLSSLSFKQGDKLKLSFHAETTDKIL 559

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FS+ G  +     RLP G              +     +                 ++ 
Sbjct: 560 VFSTGGKFFTLGADRLPGGRGHGE--------PIRLMVEMDEAQDVVSAFVHKPGRNLLL 611

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +            D +   R GK  + L +  E       T  + + +  +  + + FP+
Sbjct: 612 SNNEARGFVVSEDDVVANTRKGKQVLNLTAPAEAALCVDATG-DHVAIIGENRKLLVFPL 670

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + I    GR   GVR      G
Sbjct: 671 AQIAQM-GRG-RGVRLQRYRDG 690


>gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
 gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3]
          Length = 737

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 241/736 (32%), Positives = 375/736 (50%), Gaps = 59/736 (8%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
            I +   E   I    +   +   YL YA++ I  RA+PD+RDG KPVHRRIL+ M QM 
Sbjct: 2   TIHAPPPEGGRIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMR 61

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  L++GQGNFG++DGD 
Sbjct: 62  LNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDS 121

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTEC+L  AA  LLD + +D+VDFR  YD   +EPVVL A +PN+L NG  GIAV
Sbjct: 122 AAAMRYTECKLTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAV 181

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYAT 243
           GMAT+IP HN+GE++D C  ++D P+     L++++ GPDFPTG   + G   I +AY T
Sbjct: 182 GMATSIPPHNVGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYET 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG + +R     E       +I+VTE+PYQV K+ ++E +A+L+  K+   + D+RDES
Sbjct: 242 GRGGVRLRARWETEDLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDES 301

Query: 304 DRQGYRVVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAF 361
                R+++E   R    ++++  L++ + L+  F +NM  L+    P    L   L+AF
Sbjct: 302 AE-DIRLILEPKNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAF 360

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EV+ RR+++ + +   R H+L GL I   N+DEV+RI+R    P+          
Sbjct: 361 LDHRREVLNRRSQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQPKA--------- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+EVQ   IL+ RL +L  L    I  E  +L 
Sbjct: 412 --------------------VLIARFGLTEVQADFILDTRLRQLARLEEMTIEKEFKALS 451

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL---DMEDEDCIVREDM 538
            E+     + SS  +    I +EL +V+  L +PRRT I + +     +  E  I RE +
Sbjct: 452 EELAHLQALTSSEGKQWKAISKELEAVRKALISPRRTTIADAVDTSAFVAPEAFIPREAI 511

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G++        RA +   +  S +  ++ D +  L    T   +L  +S G +
Sbjct: 512 TVILSERGWI--------RAAKGKVEDPSELKFKEGDQLAYLVPAYTTDKLLVGASDGRI 563

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           +     +L  G  +  G+ L  ++ L++   I  ++             ++ A+K G   
Sbjct: 564 FTIGADKLASG--RGHGEPLRLMIDLDEKAEIINVLA------HQPGGKLLIASKAGYGF 615

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVF 716
                D +   R GK  +     D +  +        + +    +  + + FP+  +   
Sbjct: 616 IAPEDDTLAQKRGGKQVLN---GDMLAMLRIPQTPTADHVATIGENIKTLIFPLDELPEM 672

Query: 717 AGRNSVGVRGISLAKG 732
            GR   GVR  +  +G
Sbjct: 673 -GRG-KGVRLQNFKQG 686



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 50/180 (27%), Gaps = 16/180 (8%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GDQ+    +V     D          +                           +E
Sbjct: 535 KFKEGDQL--AYLVPAYTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAE 592

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L  S+ G+G      D     R GK +           G ++A+  +
Sbjct: 593 IINVLAHQPGGKLLIASKAGYGFIAPEDDTLAQKRGGKQVLN---------GDMLAMLRI 643

Query: 848 NDN---DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
                 D +  + +    +  P++E+    R  KGV + +  +   +  V      +  +
Sbjct: 644 PQTPTADHVATIGENIKTLIFPLDELPEMGR-GKGVRLQNFKQGG-LADVTVFNAEQGPE 701


>gi|159902545|ref|YP_001549889.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
 gi|159887721|gb|ABX07935.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9211]
          Length = 828

 Score =  571 bits (1472), Expect = e-160,   Method: Composition-based stats.
 Identities = 264/867 (30%), Positives = 435/867 (50%), Gaps = 77/867 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+ + ++S+  EMQ SYL YA++VI+GRA+PD RDG+KPV RRIL+ M ++G+   + + 
Sbjct: 2   EERLQAISLHHEMQRSYLEYAMSVIVGRALPDARDGMKPVQRRILYAMHELGLTPERPFK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q ++ R  +++G GNFGSVD DPPAA RYTE
Sbjct: 62  KCARVVGDVLGKYHPHGDQAVYDALVRLVQSFASRYPVLDGHGNFGSVDDDPPAAMRYTE 121

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   A+  +L +LG +TV+F PN+D S QEP+VL A+ P +++NG  GIAVGMAT+IP
Sbjct: 122 TRLAAIAYEAMLGELGSNTVEFAPNFDSSQQEPIVLPAQLPFLILNGCSGIAVGMATSIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN+ EV++  + +I  P+I  + L+ II GPDFPTG  +L  TG+K  Y  G+GSI +R
Sbjct: 182 PHNINEVINALIEIIKKPNISEERLLSIIPGPDFPTGGEVLIGTGVKETYLKGKGSIPMR 241

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G++HIE+ +       +  I++TE+PYQ++K+  +EK+AE+V   ++  IAD+RDESDR+
Sbjct: 242 GIAHIEEINPGKGKHKKNAIIITELPYQISKSNWIEKLAEMVNNGKVEGIADIRDESDRE 301

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+V+EL+R ++ + ILN LY+ TSLQS F   ++A+   +P++ +L   L  F+ FRE
Sbjct: 302 GMRIVVELRRDSNPEKILNTLYQRTSLQSNFGATLLAIVNGQPKQLSLKKFLDIFLEFRE 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             ++RRTK  L K  +R  ++ GL  A+ N+  V+ +I  + +   AR  LM R      
Sbjct: 362 LTIIRRTKNNLLKTLERLEIVEGLLKALENVRNVIDMIESAKDAMEARTRLMVR------ 415

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + L+E Q   IL + L RLT L    + NEL  L  +   
Sbjct: 416 --------------------LDLTEKQADGILSMPLRRLTNLETQSLYNELEELKEKKSC 455

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +L+ R  LL  + +EL  ++ +  + R+T+++EG  ++  +                
Sbjct: 456 LEIVLNDRDELLKAMIEELKGLRKQFGSKRKTKLIEGGDELLAQRNASLRPNAELQRKKA 515

Query: 547 Y--VKRVPLSVYRAQRRGGKGRSGVVMRDE----------DFVTDLFIVSTHTSVLFFSS 594
           Y  + R    + +   +       ++ R                 L         +   +
Sbjct: 516 YENLPRESRLMIQNDNQVKIVSPQLLGRLHLDESCNLGDAPIPARLIWPIEKNPKVIVVT 575

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
                    W      P    K +  IL     E+I++I+P  +D      L +   T  
Sbjct: 576 NCGKIALVKWEFSGNQPGIIQKFIPTILE---KEKISSIIPIGKD----KELSIGLLTSD 628

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G  +R  + + + ++      +KL     + S   C   + +++ + +G+ ++  I    
Sbjct: 629 GRFKRLDIEEIVDMSGRAASLLKLKENVNLQSGLICRLNDYLIIVSDIGRILKIKIDDEN 688

Query: 715 -VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               G+ + G   + L  G+++I  AI   +  D          +      I        
Sbjct: 689 IPIMGKLAQGSVIMKLFPGERIIG-AITCSSKEDLIMITKKGSILKHSINSIRTCKRGDL 747

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSE---KGFGKRTSSYDFRISNRSGKGIRAT 830
               +   + N  + R  ++   +  +  ++     G   R S             I+  
Sbjct: 748 GTIKNILKDSNKEQNRVVQVFNGKSLVGVITSKERNG---RISQEA----------IKEI 794

Query: 831 DVSKINEIGALVAVFPVNDN---DQII 854
              KIN+      +  V+D+   D++I
Sbjct: 795 KYDKINKD-----LIKVDDDEYIDEVI 816



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 55/140 (39%), Gaps = 9/140 (6%)

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSG 824
           SG+   I      + +E           K KE  I  ++  G  KR    +   +S R  
Sbjct: 588 SGNQPGIIQKFIPTILEKEKISSIIPIGKDKELSIGLLTSDGRFKRLDIEEIVDMSGR-- 645

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVI 882
               A  + K+ E   L +      ND +I+VSD G ++++ +++  I I  +  +G VI
Sbjct: 646 ----AASLLKLKENVNLQSGLICRLNDYLIIVSDIGRILKIKIDDENIPIMGKLAQGSVI 701

Query: 883 FSTAKDERVVSVERIRESEI 902
                 ER++        E 
Sbjct: 702 MKLFPGERIIGAITCSSKED 721



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           ++ ++    D +  I  +      +RL   +  +++               +   +    
Sbjct: 608 ISSIIPIGKDKELSIGLLTSDGRFKRLDIEEIVDMSGRAASLLKLKENVNLQSGLICRLN 667

Query: 798 QFILTVSEKGFGKRTSSYD--FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
            +++ VS+ G   +    D    I  +  +G     +        ++     +  + +I+
Sbjct: 668 DYLIIVSDIGRILKIKIDDENIPIMGKLAQGSVIMKLFPGER---IIGAITCSSKEDLIM 724

Query: 856 VSDKGTLIRVPVNEIRIASR 875
           ++ KG++++  +N IR   R
Sbjct: 725 ITKKGSILKHSINSIRTCKR 744


>gi|301598495|pdb|3IFZ|A Chain A, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
 gi|301598496|pdb|3IFZ|B Chain B, Crystal Structure Of The First Part Of The Mycobacterium
           Tuberculosis Dna Gyrase Reaction Core: The Breakage And
           Reunion Domain At 2.7 A Resolution
          Length = 508

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 235/525 (44%), Positives = 325/525 (61%), Gaps = 32/525 (6%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  D+     I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPDDSL-DRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQGNFGS 
Sbjct: 60  FDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSP 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 120 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G
Sbjct: 180 GIAVGMATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQG 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
             +AY TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 240 TADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGI 299

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+VIE+KR A A V++N LY++T LQ+ F  NM+A+    P    L 
Sbjct: 300 SNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLD 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT Y L KA +RAH+L GL  A+  LDEV+ +IR S   + AR 
Sbjct: 360 QLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARA 419

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            L++                           + + E+Q +AIL+++L RL  L R  I +
Sbjct: 420 GLIE--------------------------LLDIDEIQAQAILDMQLRRLAALERQRIID 453

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L  +  EI +  DIL+   R  GI++ EL  + D     RRTRI
Sbjct: 454 DLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRI 498


>gi|126695342|ref|YP_001090228.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
 gi|126542385|gb|ABO16627.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. MIT 9301]
          Length = 813

 Score =  571 bits (1471), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/750 (34%), Positives = 415/750 (55%), Gaps = 53/750 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  +K +
Sbjct: 2   DKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ QD+S +   ++G GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV F  N+DGS  EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLASIAHKGFLEEIGSETVSFSNNFDGSQTEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VD  VA++ N DI    L +II+GPDFPTG  ++    I+  Y TG+GS+ I
Sbjct: 182 PPHNLGEIVDSLVALVKNNDISNKKLSKIIQGPDFPTGGELIHSAAIEELYETGKGSLTI 241

Query: 251 RGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV ++E+ +       +  +++TE+PYQ++KA  +EK+AELV   +I  I+D+RDESDR
Sbjct: 242 RGVINMEEVNLGKGKHKKNALIITELPYQISKAGWIEKLAELVNSGKIHGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP + +L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLSLKKYLNFFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    ++  +L GL+ A  N+ +VV II  S N   A+ +L++      
Sbjct: 362 EETIRKRTFYFLKNTLEKLEILEGLSKATKNIKKVVAIIEESENSVEAKSKLIK------ 415

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I NE+ +L  +  
Sbjct: 416 --------------------NFFLSEKQASSVLDMPLRKLTNLEKNQIDNEIINLEEKKS 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--------LLDMEDEDCIVRED 537
               +L+ R  LL ++ +ELL +K + +  R+T++++          L+ +  +  + + 
Sbjct: 456 YFQKLLNERELLLELLIEELLILKKKYNVKRKTKVIKNINQNKELENLNNQILEEFINKK 515

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             + + +  Y+K++ L  Y+      K    V    ++     FI +   ++      G 
Sbjct: 516 TKLCIDNRLYLKKMILGNYK------KSFEVVNKFIDNKNIQKFICNIEKNIKLI---GI 566

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
               KV+ +   S       L N   +      + I+ F   +    N Y+      G  
Sbjct: 567 TNTGKVFNIDWESNVNNDYKLDN--KILGNIHPSEIINFHSIKKEIKN-YLCILNSDGRF 623

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRVF 716
           ++    + +  +       KL +  + +      +  D+++ T +G+  RF + + I   
Sbjct: 624 KKVLFDEDMIKSNRSFTITKLKNNLKTIDSFISNKNKDLIILTSIGRIFRFNLSNKILTP 683

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + S G+    L   + ++S     + + 
Sbjct: 684 TSKQSQGLILAKLLPSETIVSCCPFDNGEN 713


>gi|291320112|ref|YP_003515370.1| topoisomerase IV subunit A [Mycoplasma agalactiae]
 gi|290752441|emb|CBH40412.1| Topoisomerase IV subunit A [Mycoplasma agalactiae]
          Length = 861

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 229/810 (28%), Positives = 398/810 (49%), Gaps = 40/810 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +       +    I   ++   + + +  Y+  VI  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKKKEQQLNDLLSKIIRENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G++ NK + K AR+ G+V+GKYHPHG+ +IYDA+ RM Q+W +   L+E  GN GS+
Sbjct: 61  YDLGLQNNKPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL + A++++ D+ K+TV F PN+D S +EPVV+    PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGST 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A + NP I+L  L +II+GPDFPTG +I G  GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDAAIAKVKNPAIELSKLAKIIQGPDFPTGGIIYGTDGIHEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  G+G I +     +       + I +TEIPY V K+ ++ +I  +V  + +  + +++
Sbjct: 241 FERGKGRITLASRYSVY-ADNKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++DR G  ++I L + A  +VI+N L+  T ++  ++ N V ++ Y P+   +  +L A
Sbjct: 300 DQTDRNGINILITLDKEADENVIVNYLFLKTQMRVYYNYNNVVIDNYTPKTLGISALLDA 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++   +++ ++  ++ L K R+R  +++G        D+V+ +IR S N   +++ ++  
Sbjct: 360 YLKHVKDIKIKTIEFDLIKHRERLEIVIGFLKVAKISDKVIEVIRKSEN---SKQGVIDN 416

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +A                         +  Q  AI ELRL +L+         E   L
Sbjct: 417 LMSA----------------------FDFTLNQATAIAELRLYKLSKTDEQSFLIEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDM 538
             +IK+C  +L+        +      +K +   PRRT I    +   +  ED +  E +
Sbjct: 455 EEKIKQCELLLNDSDEFNKYLIALFKDLKVKFGRPRRTSIENEQIKASINQEDLVKEEQV 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  GY+K+V   +Y +        +   ++++D +      S+   +L F++ G  
Sbjct: 515 FLGISKFGYIKKVSKKIYESN-----LINTYGIKEDDNILFYDNASSLDKLLLFTNFGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               V+++     +  G  L + + L  GE + + +   + +   ++ YV   TK G  +
Sbjct: 570 AYLPVFKVHESKWKEFGTHLSDFVDLASGEELVSAIKVSDFD---SSNYVCLFTKKGQGK 626

Query: 659 RNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +  L +F     S   +AMKL + DE++  +      D+LL TK      +  + +    
Sbjct: 627 KVLLKEFDVSRFSKTFVAMKLKNDDELIGAKISNGLKDVLLITKNNFASLYSENEV-PIY 685

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  S G +   LA  D++ + A+V   D+     I                  +      
Sbjct: 686 GLKSNGNKACYLANYDELSAFAVVSSNDS--VVLINANNKAKVVNVSEITKVSKANKGVA 743

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKG 807
             +     S  +  +       IL V+ +G
Sbjct: 744 LFAKSRTNSPIKQCDSLQSSSKILIVNNQG 773



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 92/254 (36%), Gaps = 15/254 (5%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              +++        +  +K G +++     +     +      +   D IL  +  +  +
Sbjct: 502 SINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINT---YGIKEDDNILFYDNASSLD 558

Query: 695 DILLTTKLGQ-----CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            +LL T  G        +   S  + F    S  V    LA G++++S   V   D+   
Sbjct: 559 KLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFV---DLASGEELVSAIKVSDFDSSNY 615

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
             +   K    +  L   D    +       ++ N  E    ++    + +L +++  F 
Sbjct: 616 VCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLK-NDDELIGAKISNGLKDVLLITKNNFA 674

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S  +  I      G +A  ++       L A   V+ ND ++L++       V V+E
Sbjct: 675 SLYSENEVPIYGLKSNGNKACYLA---NYDELSAFAVVSSNDSVVLINANNKAKVVNVSE 731

Query: 870 IRIASRATKGVVIF 883
           I   S+A KGV +F
Sbjct: 732 ITKVSKANKGVALF 745


>gi|115371945|ref|ZP_01459257.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370910|gb|EAU69833.1| DNA gyrase/topoisomerase IV, A subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 482

 Score =  570 bits (1470), Expect = e-160,   Method: Composition-based stats.
 Identities = 222/427 (51%), Positives = 298/427 (69%), Gaps = 9/427 (2%)

Query: 1   MTEHIISSDEEEEK--------GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPV 52
           M +                    +  V+I DEM+ SYL Y+++VI+GRA+PD+RDGLKPV
Sbjct: 1   MADDTTDKPATPPASPPPSGAGELIPVNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPV 60

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+ M  +G   N+ Y K AR+ G+V+GKYHPHG+A++Y+A+ R+AQ+WSLR LL++
Sbjct: 61  HRRVLYAMHDLGNTHNRAYKKSARVVGDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGSVDGD PAA RYTE R+ + A  LL D+ K+TVDF PNYD S  EP+V+  ++P
Sbjct: 121 GQGNFGSVDGDSPAAMRYTEVRMDRLAEELLADIDKETVDFGPNYDDSLTEPLVMPTKFP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           N+LVNG  GIAVGM TNIP HN+GEV+DG + +ID+P   +  LM+ I GPDFPT A I 
Sbjct: 181 NLLVNGSTGIAVGMTTNIPPHNMGEVIDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT 240

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGD-REQIVVTEIPYQVNKAAMLEKIAELVREK 291
           GR GI  AY TGRG I IR  + IE +    RE I++TEIPYQVNKA ++EKIA+LVREK
Sbjct: 241 GREGIARAYETGRGQITIRARTEIETSKKGDREAIIITEIPYQVNKARLIEKIADLVREK 300

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
           ++  I+D+RDESDRQG R+ IELKR A + V+LN L+  T L++ F   M+A++G +P  
Sbjct: 301 KLEGISDIRDESDRQGMRIFIELKRDAISGVVLNNLFSMTPLETTFGAVMLAIDGGQPRT 360

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L  +L  F++ R +V+ RRT+Y L KA  R H++ GL +A   +D VV +IR S +P+
Sbjct: 361 LNLKELLDRFISHRRDVITRRTRYELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPD 420

Query: 412 TARRELM 418
            AR  LM
Sbjct: 421 EARWGLM 427


>gi|188024071|ref|ZP_02996816.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195867813|ref|ZP_03079813.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551406|ref|ZP_03772352.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188019110|gb|EDU57150.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|195660510|gb|EDX53767.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225379221|gb|EEH01586.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 392/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 733

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 253/738 (34%), Positives = 375/738 (50%), Gaps = 62/738 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT H    +      I    + + +   YL YA++ I  RA+PD+RDG KPVHRRIL+ M
Sbjct: 1   MTIHTPPPEG---GRIVDEPMGEALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QM +       KCA++ GEVMG YHPHG+A+IYDAL R+AQD++ R  L++GQGNFG++
Sbjct: 58  HQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTEC+L  A+  L++ + +D+VDFRP YD   +EP VL A +PN+L NG  
Sbjct: 118 DGDNAAAMRYTECKLTAASVLLMEGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN+GE++D C+A++D P+     L EI+ GPDFPTG   + G   I +
Sbjct: 178 GIAVGMATSIPPHNVGELIDACLALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG + +R     E       QIV+TE+PYQV K+ ++E +AEL+ +K+   + D+
Sbjct: 238 AYETGRGGVRLRARWEREPLERGGYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGI 357
           RDES     RVVI+ K R   AD ++  L+R + L+  F +NM  L+    P    L   
Sbjct: 298 RDESAE-DIRVVIDPKSRNIDADSLMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKAC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R EV+ RR+ + + +   R H+L GL I   NLDEV+RI+R    P+      
Sbjct: 357 LQAFLDHRREVLNRRSAWRIERVEKRLHLLEGLRIVFLNLDEVIRIVREEEQPKA----- 411

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          LSE Q   IL+ RL +L  +    I NE 
Sbjct: 412 ------------------------VLIARFGLSETQADFILDTRLRQLARIEEMTIENEY 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED---EDCIV 534
            +L  E+     + SS ++    I QEL + +  L +PRRT I E +        E  I 
Sbjct: 448 KALSEELASLQSLTSSPAKQWKKIGQELAATRKALISPRRTTIAEAVDASAFVPAEAFIP 507

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           RE + V +S  G++        RA +   +  S +  ++ D +  L    T   +L  +S
Sbjct: 508 REAITVILSERGWI--------RAVKGKVEDPSELKFKEGDALGFLVPAFTTDKLLVAAS 559

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G V+     +L  G  +  G+ L  ++ L +   I  ++             ++ A+K 
Sbjct: 560 DGRVFTVGADKLASG--RGHGEPLRLMVELEESAGIVAVLA------HQPGAKLLIASKA 611

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G        + +   R GK  +     D  L        + ++   +  + + F    + 
Sbjct: 612 GYGFIAPEDELLAQKRGGKQVLN---GD--LLAAIRVTGDHVVTIGENLKTLIFKADELP 666

Query: 715 VFAGRNSVGVRGISLAKG 732
              GR   GV+  S  +G
Sbjct: 667 EM-GRG-KGVKLQSFKQG 682



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 42/161 (26%), Gaps = 13/161 (8%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD +    +V     D          +                           + 
Sbjct: 535 KFKEGDAL--GFLVPAFTTDKLLVAASDGRVFTVGADKLASGRGHGEPLRLMVELEESAG 592

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L  S+ G+G      +     R GK +           G L+A   V
Sbjct: 593 IVAVLAHQPGAKLLIASKAGYGFIAPEDELLAQKRGGKQVLN---------GDLLAAIRV 643

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              D ++ + +    +    +E+    R  KGV + S  + 
Sbjct: 644 T-GDHVVTIGENLKTLIFKADELPEMGR-GKGVKLQSFKQG 682


>gi|78778390|ref|YP_396502.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
 gi|78711889|gb|ABB49066.1| DNA topoisomerase IV subunit A [Prochlorococcus marinus str. MIT
           9312]
          Length = 813

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 252/750 (33%), Positives = 413/750 (55%), Gaps = 53/750 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  +K +
Sbjct: 2   DKKKFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL R+ Q++S +   ++G GNFGSVD DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVRLVQNFSTKYPTLDGHGNFGSVDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   +H   L+++  +TV+F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPISHKGFLEEIDSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSSGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG +A+I+N ++    L  II+GPDFPTG  ++    I+  YATG+GSI I
Sbjct: 182 PPHNLGEIVDGLIALINNKEVSNKKLSNIIKGPDFPTGGELIYSRAIEELYATGKGSITI 241

Query: 251 RGVSHIE-----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV + E     K    R  +++TE+P+Q++KA  +EK+AELV   +I  I+D+RDESDR
Sbjct: 242 RGVINSEAINLGKGKHKRNALIITELPFQISKAGWIEKLAELVNSSKINGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++A+++++ LY+ T+LQ+ F    +AL   KP +  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNAELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKQYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    ++  +L GL+ A  N+ +++ II  S N   A+ +L+       
Sbjct: 362 EETIRKRTNYFLKNTLEKLEILEGLSKATKNIKKIIEIIEDSENSAEAKSKLI------- 414

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 YLS  Q  ++L++ L +LT L ++ I  ++  L  +  
Sbjct: 415 -------------------DIFYLSAKQANSVLDMPLKKLTNLEKNQIDEDIRKLQEKKD 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE--------D 537
              ++L+ R  LL ++  ELL +K + +  R+T++++ +   E+ + I  +         
Sbjct: 456 YFQNLLNERKLLLELLVDELLILKKKYNVKRKTKLLKNIDQNEELETINNQILEDFINKK 515

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             + + +  Y++++ L+ Y+      K    V    ++     FI +   +V      G 
Sbjct: 516 TKLFIDNRLYLRKMILNNYK------KSFEDVNKIIDNKNIQKFICNIDKNVKII---GI 566

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y  KV+ +   S       L     +        I+ F   +    N Y+      G  
Sbjct: 567 TYTGKVFHINWESNINNDYKLDK--KIIGNIDQNKIINFHSIKKGIKN-YLCILNSDGRF 623

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRVF 716
           ++    + +  +       KL +  + +     ++E ++++ T +G+  +F + +     
Sbjct: 624 KKVLFDEDMIKSNRCFSITKLKNNIKTIDSFIFSEEKNLIILTSIGRMFKFNLSNKFLTP 683

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + S G+    L   ++++S     + + 
Sbjct: 684 TTKQSQGLMLTKLLPTEKIVSCCSYQNGEN 713


>gi|171920938|ref|ZP_02932082.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188024134|ref|ZP_02996867.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209554590|ref|YP_002284910.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|171903170|gb|EDT49459.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188019193|gb|EDU57233.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|209542091|gb|ACI60320.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 852

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 392/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|185179130|ref|ZP_02964849.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184208968|gb|EDU06011.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 852

 Score =  570 bits (1469), Expect = e-160,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 392/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
 gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1]
          Length = 750

 Score =  570 bits (1468), Expect = e-160,   Method: Composition-based stats.
 Identities = 249/742 (33%), Positives = 380/742 (51%), Gaps = 66/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V++ + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKSLIPPEPAE---IHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG  ++     I  
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E+ +     +V+TEIPY V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRVRAKWKQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K +     +++  L+R T L+S   +N+  L   K P+   L   
Sbjct: 298 RDESAE-DVRLVIEPKSKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +  +R  +L G  IA  N+DEV+RIIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSNYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKTFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM---ED 529
            +L  E+K   ++L+S       + +++ +V+D          RRT   +         +
Sbjct: 448 KNLRGELKGINELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRRRTNFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G+V        R  +      S +  + +D +   F     + V
Sbjct: 508 EAFIEREPVTVVVSEKGWV--------RTLKGHVADLSNLQFKTDDQLGQAFFAENTSKV 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G  Y   V +LP G  +  G+ +   + L+Q   I          S     +++
Sbjct: 560 LLFASNGKFYSLDVGKLPGG--RGHGEPIRMFIDLDQDASI-----VSMFVSKGERKFLI 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G     K  D +   R GK  + + +  E  ++ T    + + +     + V F 
Sbjct: 613 AAS-DGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAITTVQG-DQVAVIGTNHKMVVFG 670

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           +  +       + G RG+ L K
Sbjct: 671 LDQVPEM----ARG-RGVRLQK 687


>gi|28493458|ref|NP_787619.1| DNA topoisomerase IV subunit A [Tropheryma whipplei str. Twist]
 gi|28476499|gb|AAO44588.1| DNA gyrase subunit A-like protein [Tropheryma whipplei str. Twist]
          Length = 824

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 255/837 (30%), Positives = 396/837 (47%), Gaps = 108/837 (12%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            + + IT V +  +MQ+S+L YA +VI  RA+PD RDGLKPV RRIL+ M +MG+  +K 
Sbjct: 16  SDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKA 75

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VKCAR++GEVMGK HPHG+AAIYD L RM+QD+++R+ LI+G GNFGS+  D PAA RY
Sbjct: 76  HVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSL-NDGPAASRY 134

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL +AA  +++DL  + VDF PNYD  F +P VL A  PN++VNG  GIAVGMAT+I
Sbjct: 135 TEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSI 194

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E V   + ++ N    L+ +M+I+ GPDFPTG++I+G+   K  YATG+GS  I
Sbjct: 195 PPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFKI 254

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R    I+        +V+TE+PY V    ++EKI + V   RI  I D+ D SDR  G +
Sbjct: 255 RAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLK 314

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI +K   S + +++ LYR+T L+  FSVN VAL   KP+   ++ +LK F+  R  V+
Sbjct: 315 LVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDMLKVFIDHRVCVI 374

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+K+ L   + R H++ GL +A+ ++D+ + IIR S   + AR+ LM+          
Sbjct: 375 TRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMK---------- 424

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                            + ++  Q   IL++RL  LT L    +++E   L    ++  +
Sbjct: 425 ----------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEE 468

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           ILS  +++  I+  EL  V   L +PRRT +   +   + +    R+   V ++  G++ 
Sbjct: 469 ILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQ---VVLTTNGFIF 525

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFV----TDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            + ++              +                +    + +   +S G V       
Sbjct: 526 TIEVNNDLISELSQPETFDMAFNTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIG 585

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP     +      + L L   E    +              +  AT  G V+R   + +
Sbjct: 586 LP--VLDSGFVTAKSFLGLENDEEAVLLFEL------HQKESLAIATSSGIVKRVTPAIW 637

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                     + L + D ++            +  T  G  + +    +     R + GV
Sbjct: 638 PDRTER---VITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGLVNP-QNRPARGV 693

Query: 725 RGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
            G++L    D+VIS       D                                      
Sbjct: 694 AGVTLKDDDDRVISFGYTEDVDRAN----------------------------------- 718

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKR---TSSYDFRISNRSGKGIRATDVSKINE 837
                           +LTVS     KR   +    ++   R+ +G++     K  E
Sbjct: 719 ----------------VLTVS-----KRMTTSRLSSYQTRGRATRGVQCHKFLKGEE 754


>gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
 gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A]
          Length = 749

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 247/742 (33%), Positives = 381/742 (51%), Gaps = 66/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL++ ++GPDFPTG +I+     I +
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIAD 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R   H E  +     IVVT+IP+ V K+ ++EKIAEL+ +K++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWHREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     RVVIE K R    ++++  L++ T L+S  S+N+  L   + P+   L   
Sbjct: 298 RDESAE-DIRVVIEPKSRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ +   +   R  VL G  IA  N+D+V++IIR    P+ A    
Sbjct: 357 LREWLDHLRDVLLRRSAHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 413 -------------------------LIKAFKLTEVQADAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    +L S +R    + +++ +V+D          RRT   +         +
Sbjct: 448 KNLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKRRTVFADAPEHDLAALE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V VS  G+V        R  +   +  S +  + +D +   F+  T + +
Sbjct: 508 ESLVEREPVTVVVSDKGWV--------RTLKGHVEDLSNLSFKTDDKLGFAFLAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L Q               +      +
Sbjct: 560 LLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQDA------AIVSLFVNTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E     T    + + +     + V FP
Sbjct: 612 IASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEA-KAITTVAGDQVAVIGTNHKMVIFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           +  +       + G RG+ L K
Sbjct: 671 LDQVPEM----ARG-RGVRLQK 687


>gi|28572429|ref|NP_789209.1| DNA topoisomerase IV subunit A [Tropheryma whipplei TW08/27]
 gi|28410560|emb|CAD66947.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27]
          Length = 821

 Score =  569 bits (1467), Expect = e-160,   Method: Composition-based stats.
 Identities = 257/849 (30%), Positives = 400/849 (47%), Gaps = 110/849 (12%)

Query: 1   MTEHIISSDE--EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M + I    +   + + IT V +  +MQ+S+L YA +VI  RA+PD RDGLKPV RRIL+
Sbjct: 1   MDKDIPEIFDVISDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M +MG+  +K +VKCAR++GEVMGK HPHG+AAIYD L RM+QD+++R+ LI+G GNFG
Sbjct: 61  TMSRMGLSPDKAHVKCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+  D PAA RYTE RL +AA  +++DL  + VDF PNYD  F +P VL A  PN++VNG
Sbjct: 121 SL-NDGPAASRYTEARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMAT+IP HNL E V   + ++ N    L+ +M+I+ GPDFPTG++I+G+   K
Sbjct: 180 SSGIAVGMATSIPPHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFK 239

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             YATG+GS  IR    I+        +V+TE+PY V    ++EKI + V   RI  I D
Sbjct: 240 EIYATGKGSFKIRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILD 299

Query: 299 LRDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           + D SDR  G ++VI +K   S + +++ LYR+T L+  FSVN VAL   KP+   ++ +
Sbjct: 300 VTDLSDRKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGKPKTLGMLDM 359

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK F+  R  V+ RR+K+ L   + R H++ GL +A+ ++D+ + IIR S   + AR+ L
Sbjct: 360 LKVFIDHRVCVITRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNL 419

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+                           + ++  Q   IL++RL  LT L    +++E 
Sbjct: 420 MK--------------------------CLNVTRDQAEYILDIRLNMLTKLSTIKLQSEQ 453

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L    ++  +ILS  +++  I+  EL  V   L +PRRT +   +   + +    R+ 
Sbjct: 454 EELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILESSVKSKKQKTDYPRQ- 512

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV----TDLFIVSTHTSVLFFS 593
             V ++  G++  + ++              +                +    + +   +
Sbjct: 513 --VVLTTNGFIFTIEVNNDLISELSQPETFDMTFNTHSEPLRVVKSSIVCGVRSRIGALT 570

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           S G V       LP     +      + L L   E    +              +  AT 
Sbjct: 571 SAGKVIPFTPIGLP--VLDSGFVTAKSFLGLENDEEAVLLFEL------HQKESLAIATS 622

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISA 712
            G V+R   + +          + L + D ++            +  T  G  + +    
Sbjct: 623 SGIVKRVTPAIWPDRTER---VITLSAGDRVVGAARGVSSCGYFVFITAKGNLLHYSAGL 679

Query: 713 IRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +     R + GV G++L    D+VIS       D                          
Sbjct: 680 VNP-QNRPARGVAGVTLKDDDDRVISFGYTEDVDRAN----------------------- 715

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR---TSSYDFRISNRSGKGIR 828
                                       +LTVS     KR   +    ++   R+ +G++
Sbjct: 716 ----------------------------VLTVS-----KRMTTSRLSSYQTRGRATRGVQ 742

Query: 829 ATDVSKINE 837
                K  E
Sbjct: 743 CHKFLKGEE 751


>gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
 gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14]
          Length = 749

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 244/742 (32%), Positives = 372/742 (50%), Gaps = 66/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I ++  E   I  V + D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPAEPAE---IHDVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPGSAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ + +D V+FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    +L+  ++GPDFPTG +I+     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R   + E+ +     IVVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYMTGRGAFRTRAKWNQEEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     RVVIE K R    ++++  L++ T L+S  S+N+  L   K P+   L   
Sbjct: 298 RDESAE-DIRVVIEPKSRNVDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ A    
Sbjct: 357 LREWLDHLRDVLLRRSAYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPA---- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ  AIL +RL  L  L   +IR E 
Sbjct: 413 -------------------------LMKAFKLTEVQAEAILNMRLRSLRKLEEMEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    +L S +R    + +++ +V+D          RRT   +         +
Sbjct: 448 KNLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKRRTVFADAPEHDLAALE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +   +  S +  +  D +   F   T + +
Sbjct: 508 ESLVEREPVTVVLSDKGWV--------RTLKGHVEDLSSLSFKTNDKLGFAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G              +     +           +      +
Sbjct: 560 LLFATNGKFYSLDVAKLPGGRGHGE--------PIRLFIDMEQDAAIVSLFVNTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E          + + +     + V FP
Sbjct: 612 IASHEGQGFIVNEDDCVGTTRKGKQVLNVEMPNEA-KAIVTVAGDQVAVIGTNHKMVIFP 670

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           +  +       + G RG+ L K
Sbjct: 671 LDQVPEM----ARG-RGVRLQK 687


>gi|188524342|ref|ZP_03004374.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198273817|ref|ZP_03206351.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|195660114|gb|EDX53494.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|198249572|gb|EDY74354.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
          Length = 852

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 227/795 (28%), Positives = 392/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++  +    E +   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVVAVYACNE-QFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYACNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1]
 gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1]
          Length = 750

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 237/744 (31%), Positives = 376/744 (50%), Gaps = 62/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++     +      V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKEVLPPGNGDSAS--PVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHTM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + + KCARI G+VMGK+HPHG+ +IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLRLNPEQGFAKCARIVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL  + +D VDFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKN 239
           GIAVGMAT++P HN  EV D  +A+ID+PD+ +  L++ ++GPDFPTG +I  GR  I+ 
Sbjct: 179 GIAVGMATSVPPHNAAEVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R   H E        +VVTEIPY V K+ ++EKIAEL+  +++  + D+
Sbjct: 239 AYETGRGGFRLRARWHKEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLEDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           RDES      V++   R    ++++  L+R T L++ F +NM  L+  K     +L  +L
Sbjct: 299 RDESAEDIRVVLVPKSRAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R EV+VRR+++ L +   R  +L G  +A  N+DEV+ IIR    P   +  +M
Sbjct: 359 REWLDHRREVLVRRSQHRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEP---KPVMM 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 416 ER--------------------------FNLTDNQAEAILNMRLRALRKLEEFEIRTEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP------RRTRIVEGLLDMEDED- 531
            L  E  +   +L+S ++    ++ E+  V+   D        RR          + ED 
Sbjct: 450 KLSEEKTQIEALLASEAKQWKTVRWEVAKVRQTFDPEKNPALGRRRTTFGDAPSHDLEDV 509

Query: 532 ---CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
               I RE + V +S  G++        RA +      S VV ++ D +   F   T   
Sbjct: 510 QQAMIEREPITVILSEKGWL--------RAMKGHLTDLSTVVFKEGDSLKLSFHAQTTDK 561

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F++ G  Y     RLP G  +  G+ +  ++ +   +            +      +
Sbjct: 562 ILLFTTGGKFYTIGGDRLPGG--RGHGEPVRIMVDMENDQ------AVVTAFAHDPERRL 613

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + A+  GN       + +   R GK  M + + DE       +  +   +  +  + + F
Sbjct: 614 LIASYAGNGFIVPEKEVVANTRKGKQIMNVKTPDEARLCIPVSG-DHAAIVGENRKLLVF 672

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +         GVR      G
Sbjct: 673 PLEQVPEMV--RGKGVRLQRYKDG 694


>gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
 gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1]
          Length = 832

 Score =  569 bits (1466), Expect = e-160,   Method: Composition-based stats.
 Identities = 248/819 (30%), Positives = 410/819 (50%), Gaps = 71/819 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWNKKYVKC 74
           I    + +  +  YL YA++VI  RAIPD+RDGLKPV RRILF M + + + ++ ++ K 
Sbjct: 44  IVDGDLAEHARRKYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKS 103

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ G+V+GKYHPHG++A+YDA+ RMAQ +++R+ L++GQGNFGS+DGD  AA RYTE +
Sbjct: 104 AKVVGDVIGKYHPHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAK 163

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  L+ ++ +DTV+FRP YDG+ +EP+VL AR+P +LVNG  GIAVGMAT+IP HN
Sbjct: 164 LSKLAAELITEIKRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHN 223

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGV 253
           LGEV+  C+ +ID PD  +  +M  I+GPDFPTG   +  R  ++ AY TG+G+  +RG 
Sbjct: 224 LGEVIRACLLLIDEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGS 283

Query: 254 SHIEKTSGDRE---------QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
              ++    ++         ++V+TEIP+ V K++++E+I +++  K++  +  ++D S 
Sbjct: 284 WKYQEGKETKQGRKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLST 343

Query: 305 RQ-GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGI 357
                 + ++ K     ++++  L+++T LQ+   +++  L          P R  L  I
Sbjct: 344 EDIRVELELDPKSEVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSI 403

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ FR + V RR +Y L K  +R H+L G  +   +LD+ +RIIR S     A ++L
Sbjct: 404 LRYFLDFRLQTVRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKL 463

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           ++                             LS++Q  A+LE RL +L  L    I  EL
Sbjct: 464 IK--------------------------AFELSDIQADAVLETRLYKLAKLEILKIEEEL 497

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVR 535
                + K    IL S+ +L G+++ EL ++  E    RRTRI       +   E  IV 
Sbjct: 498 ADKRKQAKRIRAILKSKKKLWGVVRDELQALSGEYADRRRTRIDAEDLTEEFSAESFIVE 557

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED +V V+  G++KR                    MR+ D    L   ST   V+ FS+ 
Sbjct: 558 EDAMVLVTRDGWIKRQR----------NVNLETTRMREGDAPLALVGGSTRDCVVLFSNR 607

Query: 596 GFVYKEKVWRLP----IGSPQARGKALINILSLNQGERITTIMPF-------PEDESSWN 644
           G  Y  +V  +P     G+P  +     +   +                   PE    + 
Sbjct: 608 GSAYVIRVNDVPASSGHGTPVQKLFKFKDGEKVISVTTTDPRFMLEFAEAEKPELGEEFE 667

Query: 645 NLY--VVFATKHGNVRRNKLSDFIQI-NRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           + Y   +  T+ G   R  L    +   RSG++  K  + DE + V     ++D+   T+
Sbjct: 668 DPYPHFLAVTRGGMALRFTLWPHREPSTRSGRLYGKTKAGDEFVEVFQVWGDDDVCALTQ 727

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
            G+ +   +  + + AG    GV  I     D V+++     +          +K +  +
Sbjct: 728 KGKLLCCNVMDVNLLAG-PGRGVTLIKTDDKDGVVAVWKTSVSAEIKKSSGGTIKVVKGK 786

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
             + +   +    +K  S    ++      + +   + +
Sbjct: 787 ATVTNRGGKGRPLMKRGSVKAVSLPPPETPDFEAGAERL 825



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 84/264 (31%), Gaps = 50/264 (18%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
           F  +        +V  T+ G ++R +  +             +   D  L++   +  + 
Sbjct: 549 FSAESFIVEEDAMVLVTRDGWIKRQRNVNLETTR--------MREGDAPLALVGGSTRDC 600

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++L +  G      ++ +   +G  +   +      G++VIS+        D    + + 
Sbjct: 601 VVLFSNRGSAYVIRVNDVPASSGHGTPVQKLFKFKDGEKVISV-----TTTDPRFMLEFA 655

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +    +      D            +    +    +E   +   +       +GK  +  
Sbjct: 656 EAEKPELGEEFEDPYPHFLAVTRGGMALRFTLWPHREPSTRSGRL-------YGKTKAGD 708

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-- 873
           +F                        V VF V  +D +  ++ KG L+   V ++ +   
Sbjct: 709 EF------------------------VEVFQVWGDDDVCALTQKGKLLCCNVMDVNLLAG 744

Query: 874 -SRATKGVVIFSTAKDERVVSVER 896
             R   GV +  T   + VV+V +
Sbjct: 745 PGR---GVTLIKTDDKDGVVAVWK 765


>gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
 gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062]
          Length = 750

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 384/742 (51%), Gaps = 63/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D  E      +++ D ++  YL+YA+  I+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MGQEVIGQDGPET-----INLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ N+ + KCAR+ G+VMGKYHPHG+AAIYDAL R+AQD+S+R  +++GQGNFG++
Sbjct: 56  RLLKLDPNQGFKKCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNI 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  +LD L ++ VDFR  YDG   EPVVL   +PN+L NG  
Sbjct: 116 DGDSAAAMRYTEARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGST 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ + C  +I  PD +++ L+E I+GPDFPTG  I+   G I  
Sbjct: 176 GIAVGMATSIPPHNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILE 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R   H E+       IVVTEIPY V K+ ++EKIAEL+  +++  + D+
Sbjct: 236 AYKTGRGSFRTRAKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDI 295

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   +    ++++  L++ T L++ FS+NM  L+    P+  +L  +L
Sbjct: 296 RDESAEDVRVVLVPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVL 355

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  ++EV+VRR+ + L++   R  VL G  +A  N+DEV+RIIR   +   A+  L+
Sbjct: 356 QEWLEHQKEVLVRRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDD---AKASLI 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +                             L+EVQ  AIL +RL  L  L   +I+ E +
Sbjct: 413 K--------------------------AFDLTEVQAEAILNMRLRSLRKLEEFEIKKEHD 446

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMEDE--- 530
            L  E      +L+S  +    + +++  +            RRT          +E   
Sbjct: 447 KLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGPETEIGARRTDFGTADDRDLEEINQ 506

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        R  +   +  + +  +  D +   F   T + +L
Sbjct: 507 AMIEKEPITVVISEKGWI--------RTLKGHVQDVTNLAFKQGDQLHLSFHAETTSKIL 558

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+S G  Y     +LP G  +  G+ +  +L +++ + I +               ++ 
Sbjct: 559 IFTSGGKFYTLGADKLPGG--RGHGEPIRLMLDMDETQEIISAF------VHDPERKLLM 610

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T        +  D I   R GK  + + +  + +        + + +     + + FP+
Sbjct: 611 STDGAYGFVVQEKDVIANTRKGKQVLNVTAPAKAVLCVPAIG-DYVAVIGHNRKLLTFPL 669

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + I V       GVR      G
Sbjct: 670 AQIAVMT--RGRGVRLQRYRDG 689


>gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
 gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington]
          Length = 737

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/745 (33%), Positives = 377/745 (50%), Gaps = 62/745 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L+ D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVI 250
            HNL E+ D  + +IDNP   ++ +M  I+GPDFPTG +I+ +   I  AY TGRGS  +
Sbjct: 182 PHNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQV K+ ++E+IA L+++K+I  I+ +RDES     R+
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDES-TDIIRL 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   R     +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR+ YLLNK + R  +L  L I   NLDE++ IIR    P   +  +M+R        
Sbjct: 361 ITRRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEP---KTIIMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +SE+Q   IL  RL  L  L    I +E ++L  +     
Sbjct: 410 ------------------FKISEIQVEVILNTRLRALQKLEEHAIIDEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
            IL +   L  I+K+E+ SV+ +         RRT   E       ++    I +E + +
Sbjct: 452 KILKNHKELWKIVKKEIKSVQTQFGLNTIIGARRTSFEEVDLTNQVIDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G++        R  +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWI--------RLLKGHNTDLSTIKYKEGDAEKFIIEAYTTDKILIISSKGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G   A    L+  +  N    I    P+           ++ A+  G     
Sbjct: 564 LLADNISKGKGTAVSIKLLVDIGNNDITNILVYKPY---------QLLLLASSIGKGFLV 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ I   ++GK  M +      ++       + I    +  + + F I+ I       
Sbjct: 615 NSNEVIAQTKAGKQIMNIPEGYACITCLPVNGNS-IACINESRRLLIFNINEIPEMK--K 671

Query: 721 SVGVRGISLAKGDQVISMAIVLHAD 745
             GV      K  +++ + I    D
Sbjct: 672 GQGVVLQRF-KNAKLLDIKIFNKED 695


>gi|123967541|ref|YP_001008399.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
 gi|123197651|gb|ABM69292.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           str. AS9601]
          Length = 813

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 251/750 (33%), Positives = 412/750 (54%), Gaps = 53/750 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRI+F M ++G+  +K +
Sbjct: 2   DKKNFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPF 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YDAL ++ Q++S +   ++G GNFGS+D DPPAA RYT
Sbjct: 62  RKCARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPPAAMRYT 121

Query: 132 ECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           E RL   AH   L+++G +TV+F  N+DGS +EP VL A+ P +L+NG  GIAVGMATNI
Sbjct: 122 ETRLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+VDG V ++ N DI    L  II+GPDFPTG  ++    I+  Y TG+GSI I
Sbjct: 182 PPHNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRAIEELYQTGKGSITI 241

Query: 251 RGVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           RGV + E+ +       +  I++ E+PYQ+NKA  +EK+AELV   +I+ I+D+RDESDR
Sbjct: 242 RGVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDR 301

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G R+VIELK+ ++++++++ LY+ T+LQ+ F    +AL   KP +  L   L  F+ FR
Sbjct: 302 DGMRIVIELKKDSNSELVISNLYKKTTLQTNFGAIFLALIKGKPVQLNLKKYLNYFLEFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + +RT Y L    D+  +  GL+ A  ++ +V+ II  S N   AR +L+++     
Sbjct: 362 EETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEK----- 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 +LSE Q  ++L++ L +LT L ++ I NE+ +L  +  
Sbjct: 417 ---------------------FFLSEKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKN 455

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVRED 537
               +L+ R  LL ++ +ELL +K + +  R+T+I++ L   E+ +          + + 
Sbjct: 456 YFQKLLNERELLLKLLIEELLILKKKYNVIRKTKIIKNLNQNEELETLNNQILEDFINKK 515

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             + + +  Y+KR+ LS Y+    G            +    +  +  +T ++  ++ G 
Sbjct: 516 TKLYIDNRLYLKRMILSNYKKSFEGVNKIIDNK----NIQKFICNIEKNTKLIGITNTGR 571

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V+              +   L N   +      + I+ F   +    N Y+      G  
Sbjct: 572 VFNIDWESS-----INKDYKLDN--KILGNIHPSEIINFHSIKKETRN-YLCILNSDGRF 623

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI-SAIRVF 716
           ++      +  +       KL +  + +      +  ++++ T +G+  +F + +     
Sbjct: 624 KKVLFDKDMIKSNRSFTITKLKNNLKTVDSFISNESKNLIILTSIGRIFKFNLSNKFLTA 683

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADA 746
             + S G+    L   ++++S       + 
Sbjct: 684 TSKQSKGLIIAKLLPTEKIVSCCTFHDGEN 713


>gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 751

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 371/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPNSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+  + P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P+       
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 -----------------------------DLTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DE 530
            L  E  E   +LSS  +    +  E+  VK +         RRT+  +     E    +
Sbjct: 452 ELTKEKGEIETLLSSDDKQWQTVAWEIGEVKKKFAKATEIGRRRTQFADAPETDEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G        +I  +  +Q                 +   ++ 
Sbjct: 564 ILTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAV-------LTAFVHDPSRKQLIV 616

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  GN      ++ +   R GK  M +   +E   +   +  + + +  +  + + FP+
Sbjct: 617 STA-GNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSG-DHVAVVGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +   +     GVR      G
Sbjct: 675 AQVPEMS--RGKGVRLQRYKDG 694


>gi|188518293|ref|ZP_03003816.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
 gi|188998204|gb|EDU67301.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 11 str. ATCC 33695]
          Length = 852

 Score =  569 bits (1465), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 393/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L+  L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|225550780|ref|ZP_03771729.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379934|gb|EEH02296.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 852

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 393/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L+  L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|188518298|ref|ZP_03003819.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195867504|ref|ZP_03079507.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225551137|ref|ZP_03772083.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|188998129|gb|EDU67226.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660748|gb|EDX54002.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|225378952|gb|EEH01317.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 852

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 393/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGVTGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEVKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L+  L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLLTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706


>gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO
           3283-12]
          Length = 742

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/731 (32%), Positives = 374/731 (51%), Gaps = 58/731 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    
Sbjct: 11  ETAGHIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASG 70

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+V+GK+HPHG+A++Y+AL R+AQD++ R  L+EGQGNFGSVDGD PAA RY
Sbjct: 71  FKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRY 130

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD +  D VDFRP YDG  QEPVVL + +PN+L NG  GIAVGMAT+I
Sbjct: 131 TEARLTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSI 190

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN  EV      ++  P      L+E++ GPDFPTG  ++     I  AY TGRGS  
Sbjct: 191 PPHNAAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFR 250

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +E+       IVVT+IPYQV K+ ++E+IA+L+ +K++  + D+RDES     R
Sbjct: 251 MRARWEVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDES-TDEIR 309

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREE 367
           +V+E K RG   +V++  L+R T L+S F +NM  L   +      L  +++A++  R E
Sbjct: 310 LVLEPKTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLDHRHE 369

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+++ L     R  +L G      NLD+V+RIIR   +   A+  L+         
Sbjct: 370 VLERRSRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREEDD---AKASLIA-------- 418

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  L+++Q  ++L +RL  L  L   +IR E ++L  E    
Sbjct: 419 ------------------TFKLTDLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEKAAL 460

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDE--DCIVREDMVVT 541
           + +L S  +    I++EL  +           RR+ I+     ++    + + RE + + 
Sbjct: 461 MALLDSEKQRWKTIERELTGMIKAFGKGRLGERRSTILSAPKPVDISVVEEVEREPLTMI 520

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        RA +           ++ D +       T   + FF++ G  Y  
Sbjct: 521 LSQKGWV--------RAVKGHNVDLENQKFKEGDALKLAIPCQTTDRLCFFATDGRAYTV 572

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   LP G     G+ +  ++ L+  E +  + P  + +        + A+  G     +
Sbjct: 573 KGADLPRGRGD--GQPIRLLIDLSNDEDLLAVFPIEDGKRR------LVASSAGRGMLVE 624

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
               +   RSG+  + L    E   V    + + + +     + + FP+  + V A    
Sbjct: 625 EEALVAEKRSGRQVLNLKEG-EFARVCVPAEGDHVAVVGDNRRFLIFPLEQLPVMA--RG 681

Query: 722 VGVRGISLAKG 732
           +GV     + G
Sbjct: 682 LGVALQKYSDG 692


>gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246]
          Length = 779

 Score =  568 bits (1464), Expect = e-159,   Method: Composition-based stats.
 Identities = 263/788 (33%), Positives = 399/788 (50%), Gaps = 61/788 (7%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM-QMGVEWNKKYV 72
           + I +V+I DE++  +LTYA++V+ GRA+PD+RDGLKPV RRIL+ M   + +  +KK +
Sbjct: 3   ETIETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKKAL 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCA+I GEVMG YHPHG++A+Y+AL RM+Q+W LR+ L+ GQGNFGSVDGDPPAA RYTE
Sbjct: 63  KCAKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L + A  LLD+LG+DTVD   +YDG+  EP VL A++PN+LVNG  GIAVGMAT IP 
Sbjct: 123 AKLTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIR 251
           HNLGEV+  C  +IDNPD  +  L++ I+GPDFP  G ++  R  ++  Y  G GSI ++
Sbjct: 183 HNLGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIKVQ 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRV 310
                EK      QIVVT IPY VNK  +   I  ++ ++++  +    +ES+ + G R+
Sbjct: 243 AEWKEEKIDRGV-QIVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGLRL 301

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-------RFTLIGILKAFVA 363
           V+E+K G   ++++  LY++T LQ  +S NM AL   +         R +L  +L  F+ 
Sbjct: 302 VLEIKNGTDPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEFLK 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L + R R H+L G  I    LD  +++IR S                
Sbjct: 362 FRLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIRESS--------------- 406

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L + Q  AIL+ +L ++  L    I +EL     +
Sbjct: 407 -----------GKPDAAEKLKAAFKLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQ 455

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
            KE   IL+S  +L G+IK EL ++ ++    R+TR+       +  +E  I RE+  V 
Sbjct: 456 AKEIETILASEKKLWGVIKSELEALIEKFPERRKTRMASDEDVLEFNEEAYIARENTNVV 515

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  G +KRV                   + + D V  +   ST   V FF+  G  Y  
Sbjct: 516 LTKNGRIKRVGRLA---------SVETTRVEEGDAVAAVVPGSTLDHVSFFADDGAAYTM 566

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN---------NLYVVFAT 652
           ++  +P  +    G+ +     L  G ++   +      +  +           ++V AT
Sbjct: 567 RINEVPATAGY--GEPITKFFKLADGAKVVAAVTTDPRFTPADLPAKGDTPGGPFLVVAT 624

Query: 653 KHGNVRRNKLSDFIQINRS-GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           ++G V R  L+ F   +   G+  +KL+  D+++ V     E  ++L T  G    FP+ 
Sbjct: 625 RNGFVLRLPLTAFRSESTKVGRRFVKLEEGDKVVMVRLAGAEEGVMLATSGGYVTHFPLD 684

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            + + +G    GV GI L   D  +   +V              K        +      
Sbjct: 685 QVSILSG-AGKGVIGIELESKDDCLGGVLVGGRFDKLVVETENGKTQDFGPGAVKTRKRG 743

Query: 772 ITSLKNDS 779
               K  +
Sbjct: 744 AKGEKPGA 751



 Score = 75.6 bits (184), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 76/260 (29%), Gaps = 49/260 (18%)

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
              ++ F E+         V  TK+G ++R           +     +++  D + +V  
Sbjct: 495 DEDVLEFNEEAYIARENTNVVLTKNGRIKRV-------GRLASVETTRVEEGDAVAAVVP 547

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
            +  + +      G      I+ +   AG      +   LA G +V++           D
Sbjct: 548 GSTLDHVSFFADDGAAYTMRINEVPATAGYGEPITKFFKLADGAKVVAAVTTDPRFTPAD 607

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                                                            F++  +  GF 
Sbjct: 608 LPAKGDTPG--------------------------------------GPFLVVATRNGFV 629

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
            R     FR  +   K        K+ E   +V V      + ++L +  G +   P+++
Sbjct: 630 LRLPLTAFRSES--TK--VGRRFVKLEEGDKVVMVRLAGAEEGVMLATSGGYVTHFPLDQ 685

Query: 870 IRIASRATKGVVIFSTAKDE 889
           + I S A KGV+       +
Sbjct: 686 VSILSGAGKGVIGIELESKD 705


>gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 752

 Score =  568 bits (1463), Expect = e-159,   Method: Composition-based stats.
 Identities = 245/725 (33%), Positives = 374/725 (51%), Gaps = 60/725 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V++ + ++  YL YA++ I GRA+PD RDGLKPVHRRIL+GM  + ++    + KCA+I 
Sbjct: 20  VNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKCAKIV 79

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYTE R+ + 
Sbjct: 80  GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTEI 139

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL+ + +D +DFR NY G  +EP+VL A  PN+L NG  GIAVGMAT+IP HNL E+
Sbjct: 140 ARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHNLSEL 199

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIE 257
            D  + +I + D   D L+  +RGPDFPTG +++     I   Y TGRG+  +R     E
Sbjct: 200 CDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRARWERE 259

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-R 316
           + +     IVVTEIPY V K+ ++EK+AEL+ +K++  + D+RDES     R+VIE K R
Sbjct: 260 EGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDESAE-DVRIVIEPKSR 318

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKY 375
               ++++  L++ T L++ F VNM  L     P   +L   L+ ++  R EV++RR+++
Sbjct: 319 AVEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLRRSRH 378

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +   R  VL G+ I   NLDEV+RIIR    P+                        
Sbjct: 379 RLAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEPKE----------------------- 415

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                     T  LS++Q   IL+ RL  L  L   ++R E  +L  E  E   +L+S S
Sbjct: 416 ------VLKATFTLSDIQANYILDTRLRSLRRLEEMELRREYENLEKEKSEIEGLLASES 469

Query: 496 RLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMEDE---DCIVREDMVVTVSHLGY 547
           +    I  ++  +K           RRT           +     I RE + + VS  G+
Sbjct: 470 KQWKEISSQIRDLKKRYGEATPLGRRRTTFGNVPDVGAVDVATALIEREPVTIVVSEKGW 529

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +        RA +      S +  + +D +   F   T + +L F+S G V+  +  +LP
Sbjct: 530 I--------RALKGHVADLSTLTFKGDDQLAFQFFAETTSKILLFASDGKVFTLEASKLP 581

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
            G  +  G+ L  ++ L +GE +T+I+P+           ++     G        D I 
Sbjct: 582 GG--RGHGEPLRLMVDLGEGEEVTSIIPYET------GAKLLLTASDGRGFIVGQDDLIG 633

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R GK  +  D+  ++  +      + + +  +  + + FP+  I         GVR  
Sbjct: 634 TTRKGKQVLNCDAPAKLSHIVPAAG-DHLAIIGENRKLLIFPLVQIAEMT--RGKGVRLQ 690

Query: 728 SLAKG 732
               G
Sbjct: 691 KYKDG 695


>gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003]
 gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003]
          Length = 767

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 261/741 (35%), Positives = 387/741 (52%), Gaps = 50/741 (6%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T  + S DE       +  ++  +   YLTYA++ I+ RA+PD RDGLKPVHRRILF M 
Sbjct: 13  TATMSSDDETPTSATHAEPLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMR 72

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQD+++R  L++GQGN+G++D
Sbjct: 73  ELKLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGNID 132

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE RL   A  LL+ L +D+VDFRPNYDG+  EPVVL A +PN+L NG  G
Sbjct: 133 GDGPAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGASG 192

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNA 240
           IAVGMATN+P HNL E+VDGC+A+I +P I+   L+++I GPDFPTG VI+     I  A
Sbjct: 193 IAVGMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANILEA 252

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG+  +R    +E     + QIVVTEIPYQV KA ++E++AEL+  K++  +AD+R
Sbjct: 253 YRTGRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALADVR 312

Query: 301 DESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGIL 358
           DES     R+V+E + R      ++  L+R + L+  FS+NM   ++G  P+  +L  +L
Sbjct: 313 DESAE-DVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEVL 371

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AF+  R EV+ RR+++ L K  +R  VL G  IA  NLD V+ IIR   +P+ A     
Sbjct: 372 RAFLDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAALMAEN 431

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
             +   + +                    +L+EVQ  AIL +RL  L  L   ++R E +
Sbjct: 432 WAAEAGAVV--------------------HLTEVQAEAILNMRLRSLRRLEEMELRAERD 471

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME--DED 531
            L  E      +L+S       I  EL  ++           RRT   E     E   E 
Sbjct: 472 DLLKERAGLEALLASEVAQWAQISSELEDLRKTWGKATKIGARRTDFAEAGEVEEVPIEA 531

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I RE + V +S +G+V        RA +      + V  +D D         T   ++ 
Sbjct: 532 MIEREPITVILSKMGWV--------RAMKGHQPLDAEVKFKDGDGQAFALHAETTDRIVL 583

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  +      LP G  +  G+ +  +L +     +T ++            Y++  
Sbjct: 584 MGSNGRAWTLLGANLPGG--RGMGEPVRLMLEMPNEVEVTHVL-----VPKPGEKYLLA- 635

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G+       + I   R+GK  + +            +  + +    +  + + FP+ 
Sbjct: 636 SSEGDGFIAPAEELIASTRTGKQVLNMSDGVRTRVCRVASG-DAVACVGENRKLLVFPLE 694

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            +   A     GVR      G
Sbjct: 695 ELPEMA--RGKGVRLQKFKDG 713


>gi|209554161|ref|YP_002284902.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
 gi|209541662|gb|ACI59891.1| DNA topoisomerase IV, A subunit family protein [Ureaplasma
           urealyticum serovar 10 str. ATCC 33699]
          Length = 855

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 226/795 (28%), Positives = 392/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G AT+IP
Sbjct: 124 ETRLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L++I   PDFPTG  I    G  NA+ TG G  VIR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGEGKFVIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                + +     QI++  IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ASIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ TSL+  ++   +A+    P   +L   L A +    +V+ +
Sbjct: 304 IDTKKDVNLENVKNYLYKKTSLEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T   +  Q  AI+ +RL  LT     D+RNE  SL  + K   + +
Sbjct: 412 --------------TFAFTNNQAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKILKERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            S       +KQ+++  K E    R+T         ++ ++  I ++ + + +S  GY+K
Sbjct: 458 KSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    ++++H  +L  +S   +      ++   
Sbjct: 518 IVSKKSFESSK-----YDELGLKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N    +  E++   +    ++   +   +V  +K   ++R +L++     
Sbjct: 573 RWKDVGEHLNNYAKFDANEKVV-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     ++++  ++  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D++ S+ IV +        +       +   L         S     + +    
Sbjct: 691 MKLKPNDEISSILIVPNNGYSIQLFLDQGNKCFSISELKLSKRAMTPSPLYLPTKKAQSV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVGNENVFYLL 765



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 588 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 643

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 644 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 703

Query: 896 RIR 898
            + 
Sbjct: 704 IVP 706



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 16/171 (9%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             I+         R  Y+K    + +   G   +          E N  +     +  K+
Sbjct: 450 AKILKERIKSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKAEVNEDQ-----MIEKQ 504

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
              L +S  G+ K  S   F  S     G++  D+   +          +N +D+I++++
Sbjct: 505 SLNLVISRDGYIKIVSKKSFESSKYDELGLKTNDLLFYHN--------VINSHDRILIIT 556

Query: 858 DKGTLIRVPVNEIRIASRATKGVVI---FSTAKDERVVSVERIRESEIVDE 905
            K  LI +  ++I        G  +        +E+VV+V    E   VDE
Sbjct: 557 SKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDE 607


>gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444]
 gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444]
          Length = 744

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 241/754 (31%), Positives = 379/754 (50%), Gaps = 61/754 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E     I +  +++ +   YL YA++ I  RA+PD+RDGLKPV RRIL+GM
Sbjct: 1   MSKST---AEPPADRIINEPMSEALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    Y KCA+I G+VMG YHPHG+++IYD L R+AQD+++R  L++GQGNFG++
Sbjct: 58  RVLRLDPEGGYRKCAKIVGDVMGNYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  L++ L ++ VDFRPNY  + +EPVVL A +PN+L NG  
Sbjct: 118 DGDSAAAYRYTEARMTRGAELLMEGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGAT 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN+ E++D    +I+ P    + LME ++GPDFPTG  ++  R  +  
Sbjct: 178 GIAVGMATSIPPHNVAEIIDAARHLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R   H+E T     QI+VTEIPYQV K+ +LEK++EL+  K++  + D+
Sbjct: 238 AYETGRGAFRMRARWHVEDTGRGTYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDES      V++   +    DV++  L+R   L++ FS+NM  L+   P+   L  +L+
Sbjct: 298 RDESAEDVRLVLVPRAKTVEPDVLMESLFRTCDLETRFSLNMNVLHKGAPQVMGLRDVLQ 357

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           A++  R EVVVRR ++ L+K   R H+L G   A  N+DEV+RIIR    P+        
Sbjct: 358 AYLDHRREVVVRRAEFRLDKIEKRLHILEGFLKAYLNIDEVIRIIRTEDEPK-------- 409

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        +S++Q  AIL LRL  L  L   +I+ E   
Sbjct: 410 ---------------------PVLMKRFKISDIQAEAILNLRLRALRKLEEMEIQGEHTK 448

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP----RRTRIVEGLLDME----DED 531
           L  E  E + ++ S  R    + +EL + +DE D      RR    E    ++     E 
Sbjct: 449 LTEERDELVLLIGSVRRQWTRVSKELKAARDEFDPSTALGRRRATFEQAPTVDLAAALEA 508

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
              +E + V +S  G++        R  +  G     +  ++ D  +    V +   ++F
Sbjct: 509 TRPKEPVTVVLSAQGWI--------RGMKGHGLDPDTIKFKEGDGPSFTEEVMSTDKLVF 560

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
            SS G  +     +LP G  +  G+ +   + L     I  +  F  +         V A
Sbjct: 561 MSSDGRAFMLPADKLPGG--RGHGEPIRISIELEDNVAIVGMFKFEPERKR------VMA 612

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G       ++     ++GK  +        + V      + I +     + + FP+ 
Sbjct: 613 SSTGYGFVVPEAELESNRKAGKQIVNTGGGHLNVCVPVL--GDMIAVVGTNRKMLIFPLK 670

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            +         G +  S + G ++  +      D
Sbjct: 671 DLPEMP--RGKGNKLQSYSGGAELADLITFDKRD 702


>gi|145594226|ref|YP_001158523.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
 gi|145303563|gb|ABP54145.1| DNA topoisomerase IV subunit A [Salinispora tropica CNB-440]
          Length = 827

 Score =  567 bits (1461), Expect = e-159,   Method: Composition-based stats.
 Identities = 281/895 (31%), Positives = 412/895 (46%), Gaps = 116/895 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S+ ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G 
Sbjct: 11  LSAFDQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGH 70

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR+ G+VMGKYHPH + AIYDAL R+AQD+SL   LI+G GNFGS D D P
Sbjct: 71  RPDRGHVKSARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNAPLIDGHGNFGSPD-DGP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ + A  L+ +LG++TVD  PNYDGS  +P VL A +PN+LVNG  GIAVG
Sbjct: 130 AAARYTEARMSREAMLLVGELGEETVDLGPNYDGSLTQPTVLPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY TGR
Sbjct: 190 MATNMIPHNLGEVVSAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGR 249

Query: 246 GSIVIRGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRDE 302
           G + +R        + S  R+ I V E+PY +    ++  +   V + KR+  IAD++D 
Sbjct: 250 GVVRMRAKVEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDL 309

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F
Sbjct: 310 TDRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVF 369

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A R EVV RR+ Y   +  +R H++ GL +A+ ++D+VV++IR S + + A+  LM+R 
Sbjct: 370 LAHRYEVVTRRSAYRKRRREERLHLVDGLLVALLDIDQVVKLIRGSEDAQAAKDGLMRR- 428

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE+Q   IL+  L RLT   R ++  E   L 
Sbjct: 429 -------------------------FGLSEIQATYILDTPLRRLTRYDRLELEAEQEKLR 463

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------- 534
            EI E   +L     L  ++  EL +V  +   PRRT +V+G L       +        
Sbjct: 464 GEITELSRLLDDPKVLRKVVSTELAAVVRQFAAPRRTTLVDGDLKEVLAASVPAGPLEVA 523

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +   V +S  G V R       A     +G         D V  +   +    VL  +S
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEAV----EGHRRHGRVRHDAVRAVAHSTARGKVLLVTS 579

Query: 595 LGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G  +K  V  LP+   Q        G +   ++ L  GE +  I P      +  +  +
Sbjct: 580 GGRAFKVDVLPLPVLPDQSGTVSLRGGMSAAELVPLAPGETVVGIAPLGA--PAEGSPGL 637

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVR 707
              T+ G V+       +         + L   DE++           +   T     +R
Sbjct: 638 ALGTRQGMVKVCAPDWPV--RADEFEVISLRDGDEVVGTTWLTDGAESLAFVTSEASLLR 695

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           +P+  +R   G    GV G+SL    +V+    V   D  + E                 
Sbjct: 696 YPVGLVRP-QGLRGGGVAGVSLPGDARVVYFGAVRTDDPAHGEP---------------- 738

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNRSGKG 826
                                            + V+  G   K T    +    R+  G
Sbjct: 739 ---------------------------------MVVTSTGATVKVTPFAAYPAKGRATGG 765

Query: 827 IRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +R+    K     A+  V   PV         +  G  + +P  + R   R   G
Sbjct: 766 VRSQRFLKGETEAAVAWVGPRPVG-------ATANGEPVELPAADPR---RDGSG 810



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 82/272 (30%), Gaps = 30/272 (11%)

Query: 644 NNLYVVFATKHGNVRRN---KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           ++   V  +  G V R             R G++       D + +V   T    +LL T
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEAVEGHRRHGRV-----RHDAVRAVAHSTARGKVLLVT 578

Query: 701 KLGQCVRFPISAIRVFAGRNS----VGVRGIS------LAKGDQVISMAIVLHADADYDE 750
             G+  +  +  + V   ++      G  G+S      LA G+ V+   I          
Sbjct: 579 SGGRAFKVDVLPLPVLPDQSGTVSLRG--GMSAAELVPLAPGETVVG--IAPLGAPAEGS 634

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
               +       ++ + D           S+           L    + +  V+ +    
Sbjct: 635 PGLALGTRQGMVKVCAPDWPVRADEFEVISLRDGDEVVGTTWLTDGAESLAFVTSEASLL 694

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIR-V 865
           R      R     G G+    +        +V    V  +D    + ++V+  G  ++  
Sbjct: 695 RYPVGLVRPQGLRGGGVAGVSLP---GDARVVYFGAVRTDDPAHGEPMVVTSTGATVKVT 751

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           P        RAT GV      K E   +V  +
Sbjct: 752 PFAAYPAKGRATGGVRSQRFLKGETEAAVAWV 783


>gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510]
 gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510]
          Length = 741

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 242/731 (33%), Positives = 372/731 (50%), Gaps = 54/731 (7%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            +     I    + D +   YL+YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ +E  
Sbjct: 3   PQNPASEILEKPLADALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLRLEPT 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
               K AR+ G+V+GK+HPHG++++YDAL R+AQD+S+R  L++GQGNFG++DGD  AA 
Sbjct: 63  TPPKKSARVVGDVIGKFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDNAAAM 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + A  LL+ + +D VDFRP YDG  +EP VL A +PN+L NG  GIAVGMAT
Sbjct: 123 RYTEARLTEVAKALLEGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGS 247
           NIP HN+GE+ D    +I + D  ++ L+  + GPDFPTG V +  R  +  AY TGRG+
Sbjct: 183 NIPPHNVGEICDALRHLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRTGRGA 242

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R    +EK +    QIVVTE+PYQV KA ++EKIAEL+  K+++ + D+RDES    
Sbjct: 243 FRLRARWEVEKLAQGTWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDESAEDV 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFRE 366
             V++   R    +V++  L++ T L+  FS+NM  L     P    L  +L+AF+  R 
Sbjct: 303 RLVLVPKSRNVDPEVLMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFLDHRH 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EV+VRR+ + L +   R  VL G   A  NLDEV+RIIR    P+               
Sbjct: 363 EVLVRRSNHRLTQIDHRLEVLGGYLAAYLNLDEVIRIIREEDEPKQ-------------- 408

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L++VQ  AIL +RL  L  L   +IR E  +L  E   
Sbjct: 409 ---------------ELIRAFTLTDVQADAILNMRLRNLRKLEEMEIRREHEALTGEKNG 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMED--EDCIVREDMVV 540
            L++L   +     I + +  +K +  T     RRT + +    +E   +  + RE + V
Sbjct: 454 LLELLGDEALRWKRIAEGVAEIKKKFGTGALGKRRTDVADAPAVIEVPLDALVEREPVTV 513

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S  G+++ V   +  A+    K       +D D    +    T   +L F+S G  + 
Sbjct: 514 ICSAKGWIRTVRGHLTDAEAEDVK------YKDGDERGFVERCETTDKLLVFASNGKFFT 567

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             V +LP G     G+ +  ++ L             +         ++  ++ G   R 
Sbjct: 568 IGVDKLPRGRGF--GEPVRLMIDLGNDVD------IVDLFRHQPGRTLLVVSEDGRGFRV 619

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           + ++ +   RSGK  + L+        +  +  + + +     + + FP+  + V     
Sbjct: 620 EEAEVLAQTRSGKQVLNLEDGKSARICQPVSG-DTVAIIGNNRKMLVFPLDQVPVMT--R 676

Query: 721 SVGVRGISLAK 731
             GV+      
Sbjct: 677 GKGVQLQKYKD 687


>gi|183508622|ref|ZP_02958127.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|182676081|gb|EDT87986.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
          Length = 850

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 225/796 (28%), Positives = 396/796 (49%), Gaps = 38/796 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K 
Sbjct: 3   DNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNI
Sbjct: 123 TEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +I
Sbjct: 183 PPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  +
Sbjct: 243 RACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ 
Sbjct: 303 IIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q           
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ +RL  LT     D++NE  +L  E K     
Sbjct: 412 ---------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQKR 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           ++S       +KQ+++  K      R+T++ +    +++ ++  I ++++ + +S  GY+
Sbjct: 457 INSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    + + +        + ++  D +    I+++H  +L  +S   +      ++  
Sbjct: 517 KTVSKKSFESSK-----YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITS 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-Q 667
              +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+    
Sbjct: 572 MRWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDIN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N      MKL+  D ++S     + ++  I+  +KLG  + F +  I     R + G++
Sbjct: 631 KNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLN-RLAKGIK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D+V ++ I  +   +    +           L         +     + +   
Sbjct: 690 IMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISELKLSKRAATPTNLYPITKKVQN 749

Query: 786 SEERCQELKLKEQFIL 801
                        ++L
Sbjct: 750 VLAAFLVAHENVFYLL 765



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 58/300 (19%)

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGN 656
           +    ++     + +           +  ++      +   ED+        +  ++ G 
Sbjct: 456 RINSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGY 515

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++      F          + L + D +         + IL+ T                
Sbjct: 516 IKTVSKKSFESSKYDE---LGLKTNDILFYHNIINSHDKILIITSKA------------- 559

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                   + I+L    ++ SM                        R           +K
Sbjct: 560 --------KLINLVA-HKITSM------------------------RWKDVGEHLNNYVK 586

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D++ +        ++ K+ E  ++  S     KR    +  I N++ K I    +   N
Sbjct: 587 FDANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDI-NKNSKQISIMKL---N 642

Query: 837 EIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   L++   +       II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 643 DNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
 gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53]
          Length = 753

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 240/744 (32%), Positives = 373/744 (50%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + D ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D V FR NYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL++ ++GPDFPTG VI+  R  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY+TGRG+   R     E+ +     +V+TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYSTGRGAFRTRAKWSQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K R    ++++  L+R T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DIRLVIEPKSRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+++Q  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMRTFKLTDIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    IL+S       + +++  V+D          RRT   +         +
Sbjct: 448 KNLRAELKGINAILASEKEQWAKVGEQVRKVRDLFGPKTALGKRRTSFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + + VS  G+V        R  +      S +  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTIVVSDKGWV--------RTLKGHVADLSSLAFKQDDKLGTTFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           + F++ G  Y  +V +LP G  +  G+ +   + L+Q               S  +   +
Sbjct: 560 MLFATNGRFYSLEVAKLPGG--RGHGEPIRMFIDLDQDA------AIVSLFVSTGDRRFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRF 708
            A+  G       +D +   R GK  + +    +           + + +  +  + + F
Sbjct: 612 VASHDGQGFVVGEADCVSNTRKGKQVLNVEMPNEARALTVVGEGADTVAVIGENRKMLLF 671

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +   A     GVR      G
Sbjct: 672 PLDQVPEMA--KGRGVRLQKYKDG 693


>gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42]
 gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42]
          Length = 751

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/742 (31%), Positives = 375/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QI++TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+  + P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+       
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 -----------------------------DLTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRI---VEGLLDMEDE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+     E   +   +
Sbjct: 452 ELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAEAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHISETATLTFKEGDGLKVAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + +                 ++ 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAV-----LTAFVHDPTRKQLIV 616

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  GN      ++ +   R GK  M +   +E   +   +  + + +  +  + + FP+
Sbjct: 617 STA-GNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSG-DHVAVVGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +   +     GVR      G
Sbjct: 675 AQVPEMS--RGKGVRLQRYKDG 694


>gi|186701721|ref|ZP_02971413.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|186700988|gb|EDU19270.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 850

 Score =  567 bits (1460), Expect = e-159,   Method: Composition-based stats.
 Identities = 225/796 (28%), Positives = 397/796 (49%), Gaps = 38/796 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K 
Sbjct: 3   DNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNI
Sbjct: 123 TEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +I
Sbjct: 183 PPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  +
Sbjct: 243 RACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ 
Sbjct: 303 IIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q           
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ +RL  LT     D++NE  +L  E K   + 
Sbjct: 412 ---------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQER 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           ++S       +KQ+++  K      R+T++ +    +++ ++  I ++++ + +S  GY+
Sbjct: 457 INSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    + + +        + ++  D +    I+++H  +L  +S   +      ++  
Sbjct: 517 KTVSKKSFESSK-----YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITS 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-Q 667
              +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+    
Sbjct: 572 MRWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDIN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N      MKL+  D ++S     + ++  I+  +KLG  + F +  I     R + G++
Sbjct: 631 KNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLN-RLAKGIK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D+V ++ I  +   +    +           L         +     + +   
Sbjct: 690 IMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISELKLSKRAATPTNLYPITKKVQN 749

Query: 786 SEERCQELKLKEQFIL 801
                        ++L
Sbjct: 750 VLAAFLVAHENVFYLL 765



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 58/300 (19%)

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGN 656
           +    ++     + +           +  ++      +   ED+        +  ++ G 
Sbjct: 456 RINSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGY 515

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++      F          + L + D +         + IL+ T                
Sbjct: 516 IKTVSKKSFESSKYDE---LGLKTNDILFYHNIINSHDKILIITSKA------------- 559

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                   + I+L    ++ SM                        R           +K
Sbjct: 560 --------KLINLVA-HKITSM------------------------RWKDVGEHLNNYVK 586

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D++ +        ++ K+ E  ++  S     KR    +  I N++ K I    +   N
Sbjct: 587 FDANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDI-NKNSKQISIMKL---N 642

Query: 837 EIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   L++   +       II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 643 DNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
 gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5]
          Length = 753

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/744 (31%), Positives = 364/744 (48%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +++     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWAQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     RVVIE K R    ++++  L+R T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DVRVVIEPKSRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+++Q  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKTFSLTDIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    IL S +     + +++  V++          RRT+  +         +
Sbjct: 448 KNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDRLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y   V +LP G              +     +                  +
Sbjct: 560 LLLATNGRFYSLDVAKLPGGRGHGE--------PIRMFIDMEQDAAIVAVFVYKGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTKLGQCVRF 708
            A+  G        D +   R GK  + +D   +           + + +  +  + + F
Sbjct: 612 IASHDGQGFIVGEDDCVGTTRKGKQIINVDMPNEARALTVVGEGSDSVAVIGENRKMLIF 671

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +         GVR      G
Sbjct: 672 PMDQVPEMT--RGRGVRLQKYKDG 693


>gi|171920470|ref|ZP_02931772.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|171902927|gb|EDT49216.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
          Length = 850

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 225/796 (28%), Positives = 397/796 (49%), Gaps = 38/796 (4%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K 
Sbjct: 3   DNHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RY
Sbjct: 63  YKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNI
Sbjct: 123 TEARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +I
Sbjct: 183 PPHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFII 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  +
Sbjct: 243 RACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           +I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ 
Sbjct: 303 IIDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVIN 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +   Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q           
Sbjct: 363 KVDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ----------- 411

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +  Q  AI+ +RL  LT     D++NE  +L  E K   + 
Sbjct: 412 ---------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQER 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYV 548
           ++S       +KQ+++  K      R+T++ +    +++ ++  I ++++ + +S  GY+
Sbjct: 457 INSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYI 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K V    + + +        + ++  D +    I+++H  +L  +S   +      ++  
Sbjct: 517 KTVSKKSFESSK-----YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITS 571

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-Q 667
              +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+    
Sbjct: 572 MRWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDIN 630

Query: 668 INRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N      MKL+  D ++S     + ++  I+  +KLG  + F +  I     R + G++
Sbjct: 631 KNSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLN-RLAKGIK 689

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            + L   D+V ++ I  +   +    +           L         +     + +   
Sbjct: 690 IMKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISELKLSKRATTPTNLYPITKKVQN 749

Query: 786 SEERCQELKLKEQFIL 801
                        ++L
Sbjct: 750 VLAAFLVAHENVFYLL 765



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 58/300 (19%)

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGN 656
           +    ++     + +           +  ++      +   ED+        +  ++ G 
Sbjct: 456 RINSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGY 515

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++      F          + L + D +         + IL+ T                
Sbjct: 516 IKTVSKKSFESSKYDE---LGLKTNDILFYHNIINSHDKILIITSKA------------- 559

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                   + I+L    ++ SM                        R           +K
Sbjct: 560 --------KLINLVA-HKITSM------------------------RWKDVGEHLNNYVK 586

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D++ +        ++ K+ E  ++  S     KR    +  I N++ K I    +   N
Sbjct: 587 FDANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDI-NKNSKQISIMKL---N 642

Query: 837 EIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   L++   +       II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 643 DNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|227872281|ref|ZP_03990640.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
 gi|227841893|gb|EEJ52164.1| DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus F0268]
          Length = 744

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/728 (33%), Positives = 398/728 (54%), Gaps = 29/728 (3%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SYL Y+++VI  RA+PD+RDGLKPV RR+LF M ++ V  ++  +K
Sbjct: 3   EQILTTEFSEEMQKSYLDYSMSVITSRAVPDIRDGLKPVQRRVLFDMGELRVFHDRPTLK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  +AQ +     L+EGQGNFGS++GD  AA RYTE 
Sbjct: 63  SARICGDTMGKYHPHGDSSIYETLVVLAQGFKKNQALVEGQGNFGSIEGDSAAAPRYTEA 122

Query: 134 RLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K     LL DL   +V F+PNYDG  +EPVVL A+ P  L+NG  GIAVGM T+ P+
Sbjct: 123 RLEKFTEEVLLQDLAL-SVPFQPNYDGKLEEPVVLPAKIPYFLLNGSEGIAVGMTTSTPS 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+   ++ + NP++ L  ++EI+ GPDFPTG ++  ++ ++  Y TG+G + +RG
Sbjct: 182 HNLSEVISLILSYLKNPELSLSEMLEIMPGPDFPTGGIVANQSELEEIYRTGQGRLRLRG 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               E  +   DR+++VVTEIPY +     +  ++ +A L  EK+I DI D+ ++S+ QG
Sbjct: 242 KLSFEKKEGRSDRDKLVVTEIPYTMVGQGISKFMQDVANLCEEKKINDILDISNQSNEQG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK GA  + I N LY+ T L+  F VNM+A+   +PE  +L  IL+ ++ F+ E
Sbjct: 302 IRIVLELKSGADIEKIENILYKKTKLEDSFPVNMLAIAHGRPETLSLKRILEEYLGFQVE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            +  +   LL K   +  +  GL  AV  +D ++ ++R + N + A+  LMQ   +    
Sbjct: 362 RLEAKFSKLLEKEERKREIEEGLISAVDCIDAIIALLRGAKNHKDAKTALMQGDLS---- 417

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
             LI L +       +      +++Q +AIL++RL++L GL    ++         IK  
Sbjct: 418 --LIQLKERDEVFRKTIEGFRFTDLQAQAILDMRLSKLIGLEILSLQKSHRESLKNIKNY 475

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            ++L S+  L   ++QELL ++ +    R+T+I +    + D+  I   D+       GY
Sbjct: 476 KELLGSKKVLYAHLEQELLQIQKDYGKERKTKICDAREAVYDDTAIEEMDLYYLQDRFGY 535

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VK V    ++  +             E     +        +LFF+ LG +++ K+  +P
Sbjct: 536 VKCVDPGTFQRNKES----------IEADYAYVLPCKNTDRLLFFTDLGNMHQIKILDVP 585

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           +   + +G  L N+   +  +     +   +         ++F T+   ++R K  +F  
Sbjct: 586 VTKFKDKGVPLDNLSKFSAEQERVVAVFIRK---VLEEETLLFVTEQAQIKRVKGEEFAT 642

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
            N     A KL   D +LSV     E DI+L T+    +RF +S +     + + GV  +
Sbjct: 643 QN-RLVQATKLGEEDRLLSV-LPVGEEDIVLETEDSYFLRFSLSEV-PLQKKTAKGVLAM 699

Query: 728 SLAKGDQV 735
           SL   D V
Sbjct: 700 SLRPKDYV 707



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 86/270 (31%), Gaps = 63/270 (23%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              +D +           + G V+      F +   S +             V  C   +
Sbjct: 514 AVYDDTAIEEMDLYYLQDRFGYVKCVDPGTFQRNKESIEADYAY--------VLPCKNTD 565

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            +L  T LG   +  I  + V   ++  GV   +L+K                       
Sbjct: 566 RLLFFTDLGNMHQIKILDVPVTKFKD-KGVPLDNLSK----------------------- 601

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                    S E            L+E+ +L V+E+   KR   
Sbjct: 602 ------------------------FSAEQERVVAVFIRKVLEEETLLFVTEQAQIKRVKG 637

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            +F   NR          +K+ E   L++V PV + D I+L ++    +R  ++E+ +  
Sbjct: 638 EEFATQNR------LVQATKLGEEDRLLSVLPVGEED-IVLETEDSYFLRFSLSEVPLQK 690

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVD 904
           +  KGV+  S    + V  V  +   E V+
Sbjct: 691 KTAKGVLAMSLRPKDYVKKVYSLAAEENVE 720



 Score = 52.5 bits (124), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 67/172 (38%), Gaps = 6/172 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +  A     +     +      +   G  + +       + E   ++            +
Sbjct: 508 ICDAREAVYDDTAIEEMDLYYLQDRFGYVKCVDPGTFQRNKESIEADYAYVLPCKNTDRL 567

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-EIGALVAVFP--VNDNDQIILVS 857
           L  ++ G   +    D  ++    KG+   ++SK + E   +VAVF   V + + ++ V+
Sbjct: 568 LFFTDLGNMHQIKILDVPVTKFKDKGVPLDNLSKFSAEQERVVAVFIRKVLEEETLLFVT 627

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           ++  + RV   E    +R    V      +++R++SV  + E +IV E E +
Sbjct: 628 EQAQIKRVKGEEFATQNRL---VQATKLGEEDRLLSVLPVGEEDIVLETEDS 676


>gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009]
 gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009]
          Length = 753

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 237/744 (31%), Positives = 367/744 (49%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FR NYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVT+IP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K R     +++  L+R T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR++Y   +   R  VL G  IA  N+D+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+E+Q  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKAFNLTEIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM---ED 529
            +L  E+K    +L S +     + +++  V++          RRT+  +         +
Sbjct: 448 KNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDKLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y   V +LP G              +     +                  +
Sbjct: 560 LLLATNGRFYALDVAKLPGGRGHGE--------PIRMFIDMEQDAAIVTVFVHTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            A+  G        + +   R GK  + +D  +E  ++   ++ +D I +     + V F
Sbjct: 612 IASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSIAVIGDNRKMVIF 671

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +         GVR      G
Sbjct: 672 PLDQVPEMT--RGRGVRLQKYKDG 693


>gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601]
 gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601]
          Length = 807

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 260/775 (33%), Positives = 399/775 (51%), Gaps = 65/775 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   +        +  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MNDIVDDPNMNPRD--VAEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  N  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RRLRLSSNGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD L +++VDFRPNYDG  +EP VL A YPN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTIMAEALLDGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMATNIP HN+GE++D C+ +I  P    D L++ + GPDFPTG  ++  R  I  
Sbjct: 179 GIAVGMATNIPPHNIGELIDACLHLIKAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R    +E     + Q VVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGSIRLRAKWEVEDLGRGQWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADI 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGI 357
           RDES     R+V+E K +    D+++N L++ + L++ FS+NM  L +G  P+  +L  +
Sbjct: 299 RDESAE-DIRMVLEPKSKNVDPDLLMNMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA---- 413
           L+AF+ FR +V+ RR ++ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDFRRDVLCRRARHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYE 417

Query: 414 -----RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT---------------------- 446
                 +  + R+ +  D +  +  ID  +  +  D                        
Sbjct: 418 DWSKPHQATIARATDERDYRSPLAGIDVKALELRPDPEAEARGVLADEGTPTQIPQRFGG 477

Query: 447 --MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S       + ++
Sbjct: 478 RSEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDLQWKRVSEQ 537

Query: 505 LLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L  VK           R T   E     +   E  I RE + V  S +G++        R
Sbjct: 538 LREVKKAFAKDLDRGARLTTFAEAGEAEDVPLEAMIEREPITVVCSQMGWI--------R 589

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           A          +  +D D    +F   T   +L   S G  Y      LP G  +  G+ 
Sbjct: 590 AMTGHIDLNRELKFKDGDGPRFIFHAETTDKLLVVGSNGRFYTLSAANLPGG--RGMGEP 647

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +  ++ L             +         ++ A+  G+      +D +   RSGK  + 
Sbjct: 648 VRLMVDLPNEAE------IHDLLVHTPGRKLLVASSAGDGFIVPENDVLAQTRSGKQVLN 701

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +    +    +  T  + + +  +  + + F +  +    GR   GVR      G
Sbjct: 702 VKDGVKTQVCKPVTG-DAVAVVGENRKVLVFMLDELPEM-GRG-KGVRLQKYKDG 753


>gi|13358030|ref|NP_078304.1| topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|170761865|ref|YP_001752552.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11270990|pir||H82886 topoisomerase IV subunit A UU467 [imported] - Ureaplasma
           urealyticum
 gi|6899461|gb|AAF30879.1|AE002143_4 topoisomerase IV subunit A [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827442|gb|ACA32704.1| DNA topoisomerase IV, A subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
          Length = 850

 Score =  566 bits (1459), Expect = e-159,   Method: Composition-based stats.
 Identities = 225/795 (28%), Positives = 396/795 (49%), Gaps = 38/795 (4%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
             + I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+ ++K Y
Sbjct: 4   NHQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFYDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  +L +L KD V F PN+D S +EP +L + +PN+L+NG  GIA G ATNIP
Sbjct: 124 EARLSKIASVMLANLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HN  EV D  +  ID+PD  ++ L+EI   PDFPTG  I    G  NA+ TG G  +IR
Sbjct: 184 PHNPNEVFDALIYRIDHPDCSVEKLIEICPAPDFPTGGEIHDLNGCANAHKTGEGKFIIR 243

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                +       QI+++ IPY+ NKA ++++I +++  K +  + ++RDESD +G  ++
Sbjct: 244 ACIDFKINDNKINQIIISSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGISII 303

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I+ K+  + + + N LY+ T+L+  ++   +A+    P    L   L A +    +V+ +
Sbjct: 304 IDTKKDINLENVKNYLYKKTNLEISYNTKFIAIVHRTPTLVNLSTYLDAQINHSLDVINK 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              Y LNK   R  ++ GL   V  +DE+++IIR S + + A+  L+Q            
Sbjct: 364 VDLYDLNKILLRIEIVEGLIKCVDLIDEIIKIIRASESRQDAKNTLIQ------------ 411

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                             +  Q  AI+ +RL  LT     D++NE  +L  E K   + +
Sbjct: 412 --------------VFNFTNNQAEAIIMMRLHNLTRTDIFDLKNEWQTLQDEAKTLQERI 457

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVSHLGYVK 549
           +S       +KQ+++  K      R+T++ +    +++ ++  I ++++ + +S  GY+K
Sbjct: 458 NSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGYIK 517

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
            V    + + +        + ++  D +    I+++H  +L  +S   +      ++   
Sbjct: 518 TVSKKSFESSK-----YDELGLKTNDILFYHNIINSHDKILIITSKAKLINLVAHKITSM 572

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QI 668
             +  G+ L N +  +  E++  +  + E +   +   +V A++   ++R +LS+     
Sbjct: 573 RWKDVGEHLNNYVKFDANEKVIAVYIWNE-QFKIDEYQLVLASRLNLIKRIELSELDINK 631

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N      MKL+  D ++S     + ++  I+  +KLG  + F +  I     R + G++ 
Sbjct: 632 NSKQISIMKLNDNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLN-RLAKGIKI 690

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L   D+V ++ I  +   +    +           L         +     + +    
Sbjct: 691 MKLKPNDEVSAILITPNNGYNVQLFLERGSKCFNISELKLSKRAATPTNLYPITKKVQNV 750

Query: 787 EERCQELKLKEQFIL 801
                       ++L
Sbjct: 751 LAAFLVAHENVFYLL 765



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 58/300 (19%)

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITT---IMPFPEDESSWNNLYVVFATKHGN 656
           +    ++     + +           +  ++      +   ED+        +  ++ G 
Sbjct: 456 RINSLQVRKNYLKQKMIEFKKTFGFERKTKLFDELVKVEINEDQMIEKQNLNLVISRDGY 515

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++      F          + L + D +         + IL+ T                
Sbjct: 516 IKTVSKKSFESSKYDE---LGLKTNDILFYHNIINSHDKILIITSKA------------- 559

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
                   + I+L    ++ SM                        R           +K
Sbjct: 560 --------KLINLVA-HKITSM------------------------RWKDVGEHLNNYVK 586

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            D++ +        ++ K+ E  ++  S     KR    +  I N++ K I    +   N
Sbjct: 587 FDANEKVIAVYIWNEQFKIDEYQLVLASRLNLIKRIELSELDI-NKNSKQISIMKL---N 642

Query: 837 EIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +   L++   +       II +S  G  +   V+EI   +R  KG+ I     ++ V ++
Sbjct: 643 DNDNLISANLIKKGHNQFIIAISKLGLALLFLVHEINCLNRLAKGIKIMKLKPNDEVSAI 702


>gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8]
 gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8]
          Length = 778

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 257/740 (34%), Positives = 363/740 (49%), Gaps = 70/740 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 27  ITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVV 86

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 87  GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPI 146

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP HNL EV
Sbjct: 147 AKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLREV 206

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
              CVA+I +P +    L  +I GPDF  G  I+     I   YA GRGS+ +R     E
Sbjct: 207 AQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQFE 266

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE--------------- 302
           + +  + Q+VVTE+P   +   +LE+I E+   K       L  E               
Sbjct: 267 EMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLDAV 326

Query: 303 ----SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIG 356
                     R+V E K      D  +N L   TS++S  S+N+V +    +P +  L  
Sbjct: 327 RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLRD 386

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   VVRRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P   R  
Sbjct: 387 ILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEP---RAA 443

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+R                            LSE Q   ILE+RL +L  L    I  E
Sbjct: 444 LMER--------------------------FKLSERQAEDILEMRLRQLARLEGFKIEQE 477

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L     +     ++L + + L  ++ +E+ +   +    RRT I         E  ++ E
Sbjct: 478 LADKREDQVRLQELLDNPASLKRLLIKEIEADAKQYGDDRRTLIE-TAERAVLETKVLDE 536

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V VS  G++        RA++  G   S    +  D +   F   T  +++     G
Sbjct: 537 PVTVIVSQKGWL--------RARQGHGHDASQFGFKQGDDLYGAFECRTTDTLIAVGDNG 588

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            VY   V  LP       G+ +  ++ L  G RI   +    D         + AT+ G 
Sbjct: 589 RVYSVPVGGLPSARGD--GQPVTTMIDLGSGTRIVHTIAAAPDSRW------LLATRGGY 640

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRV 715
               KLSD +   R+GK  + L+  DE+L  V        + L +  G+ + F +  ++ 
Sbjct: 641 GFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFAGAKQLALLSHKGKFLVFGLDEVKT 700

Query: 716 FAGRNSVGVRGISLAKGDQV 735
            +G    G   + L   D++
Sbjct: 701 LSG-GGRGTILMGLDGTDKL 719


>gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1]
 gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1]
          Length = 753

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/744 (31%), Positives = 367/744 (49%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FR NYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVT+IP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWEQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K R     +++  L+R T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DVRIVIEPKSRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR++Y   +   R  VL G  IA  N+D+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSEYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+E+Q  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKAFNLTEIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM---ED 529
            +L  E+K    +L S +     + +++  V++          RRT+  +         +
Sbjct: 448 KNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDKLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y   V +LP G              +     +                  +
Sbjct: 560 LLLATNGRFYALDVAKLPGGRGHGE--------PIRMFIDMEQDAAIVTVFVHTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            A+  G        + +   R GK  + +D  +E  ++   ++ +D + +     + V F
Sbjct: 612 IASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSVAVIGDNRKMVIF 671

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +         GVR      G
Sbjct: 672 PLDQVPEMT--RGRGVRLQKYKDG 693


>gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 751

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/742 (31%), Positives = 375/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+  + P    L  +L
Sbjct: 301 RDESAEDIRVVLVPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+       
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+++Q  AIL +RL  L  L   +IR E +
Sbjct: 421 -----------------------------DLTDIQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E    +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKIAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + +             +   ++ 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAV-----LTAFVHDPSRKQLIV 616

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  GN      ++ +   R GK  M +   +E   +   +  + + +  +  + + FP+
Sbjct: 617 STA-GNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSG-DHVAVVGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +   +     GVR      G
Sbjct: 675 AQVPEMS--RGKGVRLQRYKDG 694


>gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
 gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503]
          Length = 754

 Score =  566 bits (1458), Expect = e-159,   Method: Composition-based stats.
 Identities = 247/792 (31%), Positives = 385/792 (48%), Gaps = 64/792 (8%)

Query: 1   MTEHIISSDEEE--EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +    + +     + I    + + +   YL YA++ I  RA+PD+RDGLKPVHRRIL+
Sbjct: 1   MAKRPTKTPDRPAGPETIIEEPMGEALSRRYLAYALSTITARALPDIRDGLKPVHRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M QM +     Y K A+++G+VMG YHPHG+ AIYDA+ R+ QD+S+R+ LI+GQGNFG
Sbjct: 61  AMRQMRLGSGGSYRKSAKVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           ++DGD  AA RYTECRL +AA  LL+ +  DTVDFR  YDG  +EPVVL A +P++L NG
Sbjct: 121 NIDGDNAAAMRYTECRLTEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGI 237
             GIAVGMATNIP HN+ E++D C+ +I  P+   + L+  ++GPD PTG V    +  +
Sbjct: 181 SSGIAVGMATNIPPHNVAELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDL 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AYATGRG   IR     E     R QIVVTEIPYQV K+ ++E+IA+L++ K++  + 
Sbjct: 241 AEAYATGRGGFRIRARWETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLT 300

Query: 298 DLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLI 355
           D+RDES     R+V+E K G+   + ++  +++ T L++  S+N+  +        F L 
Sbjct: 301 DVRDESAE-DIRLVLEPKAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADGAPGVFGLR 359

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             L+AF+  R +V++R T+Y L+K   R  +L G  IA  NLDEV+RIIR+  +P+    
Sbjct: 360 DCLQAFLDHRRDVLLRGTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKA--- 416

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                         T  LSE+QT AIL +RL  L  L   +++ 
Sbjct: 417 --------------------------ELMATFDLSEIQTEAILNMRLRSLRKLEEMELKR 450

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRT--RIVEGLLDME 528
           E   L  E K+   +L S       I  +L   +   D       RRT         +++
Sbjct: 451 EHKDLKAEQKDLQALLKSEDIQWERIAGQLKETRKSFDPRSDLGRRRTALSDAPITEEVD 510

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            ++ I +E + V +S  G+V        RA +   + ++ +  +D D    +    T   
Sbjct: 511 LDELIEKEPVTVVISEKGWV--------RALKGHVEDKASIKYKDGDQGRFVLPAMTTDK 562

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           V+  S+ G  +   V  LP G  +  G+    ++ L     +  +           +  +
Sbjct: 563 VILVSTNGRFFALDVKDLPGG--RGHGEPFRLMVDLTNEHDLIDVFL------YQGDRTL 614

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQ 704
           + A+  G+       D +   R GK  + + +  E       T      + +       +
Sbjct: 615 LLASSAGHGLFVPEEDVLATTRKGKQVLNVAAGAEAQVCRLLTAAPGPNDYLATIGSNRK 674

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            + FP   + V       GV    +  G  V +          + +R    +     +  
Sbjct: 675 LLIFPAGDVPVMV--KGKGVVLQKITNGTLVDAKCFSPEEGLTWTDRAGRQQSAEEWKEW 732

Query: 765 ISGDTEEITSLK 776
           +    +      
Sbjct: 733 VGKRAQAGKLPP 744


>gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
 gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001]
          Length = 735

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 236/731 (32%), Positives = 374/731 (51%), Gaps = 58/731 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    I    + + +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ ++    
Sbjct: 3   ETAGHIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCAR+ G+V+GK+HPHG+A++Y+AL R+AQD++ R  L+EGQGNFGSVDGD PAA RY
Sbjct: 63  FKKCARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + A  LLD +  D VDFRP YDG  QEPVVL + +PN+L NG  GIAVGMAT+I
Sbjct: 123 TEARLTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIV 249
           P HN  EV      ++  P      L+E++ GPDFPTG  ++     I  AY TGRGS  
Sbjct: 183 PPHNAAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFR 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +E+       IVVT+IPYQV K+ ++E+IA+L+ +K++  + D+RDES     R
Sbjct: 243 MRARWEVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDES-TDEIR 301

Query: 310 VVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREE 367
           +++E K RG   +V++  L+R T L+S F +NM  L   +      L  +++A++  R E
Sbjct: 302 LILEPKTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ RR+++ L     R  +L G      NLDEV+RIIR   +   A+  L+         
Sbjct: 362 VLERRSRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREEDD---AKASLIA-------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                             T  L+++Q  ++L +RL  L  L   +IR E ++L  E    
Sbjct: 411 ------------------TFKLTDLQAESVLNMRLRSLRRLEEMEIRKEHDALSAEQAAL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDE--DCIVREDMVVT 541
           + +L S  +    I++EL ++           RR+ I+     ++    + + RE + + 
Sbjct: 453 MALLDSEKQRWKTIERELTTMIKAFGKGRLGERRSTILSAPKPVDISVVEEVEREPLTMI 512

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        RA +           ++ D         T   + FF++ G  Y  
Sbjct: 513 LSQKGWV--------RAVKGHNVDLENQKFKEGDAFKLAIPCQTSDRLCFFATDGRAYTV 564

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           K   LP G     G+ +  ++ L+  E +  + P  + +        + A+  G     +
Sbjct: 565 KGADLPRGRGD--GQPIRLLIDLSNDEDLLAVFPIEDGKRR------LVASSAGRGMLVE 616

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
               +   RSG+  + L    E   +    + + + +     + + FP+  + V A    
Sbjct: 617 EEALVAEKRSGRQVLNLKEG-EFARICVPAEGDHVAVVGDNRRFLIFPLEQLPVMA--RG 673

Query: 722 VGVRGISLAKG 732
           +GV     + G
Sbjct: 674 LGVALQKYSDG 684


>gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H]
 gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H]
          Length = 736

 Score =  565 bits (1457), Expect = e-159,   Method: Composition-based stats.
 Identities = 234/725 (32%), Positives = 366/725 (50%), Gaps = 58/725 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I    + + +   Y+ YA++ I+ R++PD+RDGLKPVHRR+L+ M Q+ ++    + KCA
Sbjct: 9   IEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPTSGFKKCA 68

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GK+HPHG+A++Y+AL R+AQD+++R  L+EGQGNFGS+DGD  AA RYTE RL
Sbjct: 69  RVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAMRYTESRL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LLD +  D VDFR  YD    EP+VL   +PN+L NG  GIAVGMAT+IP HN 
Sbjct: 129 TEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMATSIPPHNA 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVS 254
            E+      +I+ PD+ +  L++++ GPDFPTG + +  R  I  +Y TGRGS   R   
Sbjct: 189 AEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGSFRTRARW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E+       I+VTEIPYQV K+ ++E+IA+L+ ++++  + D+RDES     R+V+E 
Sbjct: 249 EVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTT-DIRLVLEP 307

Query: 315 K-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRR 372
           K +G   +V++  L+R T+L++ FS+NM  L G +     +L  +L+A++    EV+VRR
Sbjct: 308 KTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVHEVLVRR 367

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           + + L     R  +L G      NLDEV+RIIR    P+                     
Sbjct: 368 SNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPK--------------------- 406

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                   +    T  L++VQ  A+L +RL  L  L   +IR E + L  E K    +L 
Sbjct: 407 --------VSLMATFSLTDVQAEAVLNMRLRSLRRLEEMEIRRERDKLADEQKALETLLG 458

Query: 493 SRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMEDEDCIV--REDMVVTVSHLG 546
           S  R    I ++L     +  +     RRT I      ++    +   RE + V +S  G
Sbjct: 459 SERRRWTRIGKDLDGTIKKFGSGPLGERRTLIAAAPELIDISAALEIDREPLTVLLSREG 518

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +  G    G   ++ D         +   +   SS G  Y  K   L
Sbjct: 519 WI--------RAMKGHGLDPQGHRFKEGDEGWLSVECQSTDRLCLISSSGKAYTIKAADL 570

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G     G+    ++ + Q +R+ T+ P  ++         + A+  G       +  +
Sbjct: 571 PRGRGF--GQPFRTVVDVPQEDRVVTLFPVSDEGRR------LIASAAGRGMIVSEAGLV 622

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              R+GK    +   DE +          +L   +  + + FP+  +         GV  
Sbjct: 623 AEKRTGKQVFNIKDGDE-VFACVPVGGTHVLTLGQNKRALIFPLEQVPEMT--RGGGVAF 679

Query: 727 ISLAK 731
             L  
Sbjct: 680 QKLGD 684


>gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060]
 gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS
           2060]
          Length = 748

 Score =  565 bits (1457), Expect = e-158,   Method: Composition-based stats.
 Identities = 249/742 (33%), Positives = 371/742 (50%), Gaps = 61/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      +    GI SV +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKPFEPPSD--HGGIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ N  + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 59  RLLRLDPNTAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +D VDFRP+Y+G   EPVVL   +PN+L NG  
Sbjct: 119 DGDGPAAYRYTEARLTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQ 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I +P    + L   ++GPDFPTG +++     I  
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+  +R     E        +VVTEIPY V KA ++EK+AEL+ E+++  +AD+
Sbjct: 239 AYRTGRGAFRVRARWTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E + R     V++  L+R T L+S FS+NM  L   + P    L   
Sbjct: 299 RDESAE-DVRIVLEPRSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEA 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++  R  V+ RR+++ L +   R  +L GL I   +LD+V+RIIR    P+      
Sbjct: 358 LREWLDHRRTVLQRRSRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEPKA----- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ  AIL+ RL  L  L   +++ E 
Sbjct: 413 ------------------------ELMRYFQLTEVQANAILDTRLRSLRKLEEMELKREQ 448

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---D 529
            +L  E  +   +L S +     I  ++ +VK           RRT +       +    
Sbjct: 449 AALTAEKADLDALLGSEALQWKSIAAQVRAVKKTFGPETPLGRRRTTLENPPDTSDLDLA 508

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I RE + V VS  G++        R+ +      SGV  + +D +   F   T   +
Sbjct: 509 EAMIEREPITVIVSQKGWI--------RSLKGHVADLSGVQFKGDDALKLSFPTETTAKL 560

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  +S G V+     +LP G     G  +  +  L++G  I T+ P+           ++
Sbjct: 561 LVLASNGKVFTLDAAKLPGGRGF--GDPIRLMADLDEGTDIVTVWPYRA------GAKLL 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
           F T  G          +   R GK  + LD    +       + + +    +    V FP
Sbjct: 613 FGTIDGRGFTTGSDGLVANTRKGKQVVALDGAAVVTHCVEVGEGDHVAACGENRLLVVFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAK 731
           ++ I   A     GVR     +
Sbjct: 673 LTEIPEMA--RGKGVRLQRYRE 692


>gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48]
 gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48]
          Length = 738

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 251/753 (33%), Positives = 391/753 (51%), Gaps = 64/753 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I  +      I S  + + +   YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSKDVIPDEG---GRILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             M +       K A++ GEVMG +HPHG+ +IYDAL RMAQ ++ R  +++GQGNFG++
Sbjct: 58  HNMRLNPQAAARKSAKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTEC++  AA  LLD + ++ VDFRP YDG  +EPVVL A +PN+L NG  
Sbjct: 118 DGDSAAAMRYTECKMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGAT 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN+ E++D C  +I  P+ D + LM II GPDFPTG + + R   I  
Sbjct: 178 GIAVGMATSIPPHNVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ +R    +E       +I+V+EIPYQV K+ ++E++A+L+  K+   + D+
Sbjct: 238 AYETGRGSVRVRARYEVEDLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGI 357
           RDESD +  R+++E K R    +V++  L++ + L++ F+ NM  L+    P    L  I
Sbjct: 298 RDESDEE-VRLILEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTI 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L +F+  R EV++R++++ L+K   R HVL GL IA  NLDEV+RIIR    P+      
Sbjct: 357 LTSFLDHRREVLIRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETPKQ----- 411

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+EVQ   IL+ RL +L  L    I+ E 
Sbjct: 412 ------------------------TLMARFELTEVQVDYILDTRLRQLARLEEMAIKGEH 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIV 534
           + L  E    L +L S  +    I ++L  V+ +L + RRT   E    +E    E  + 
Sbjct: 448 DKLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAIESYLP 507

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +E + V +S  G++        RA +      S +  ++ D +  L        +L  +S
Sbjct: 508 KEALTVILSERGWI--------RATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLLIMTS 559

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  +     +LP G  +  G+ L  +L + +  RI  +  F            +  +K+
Sbjct: 560 DGRFFTLGCDKLPSG--RGHGEPLQLMLEMEENTRIVNVFMFTPGAKR------LMVSKN 611

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G        D +   ++GK  +  D       V      + +++  +  + + +P+S + 
Sbjct: 612 GYGFVMNEEDAVGNKKAGKSVLNADG--TEAFVALPVTGDHVVILGENNKVLVYPVSELP 669

Query: 715 VFAGRNSVGVRGISLA--KGDQVISMAIVLHAD 745
                 + G +G+ L   K   V  +AI   A 
Sbjct: 670 EM----ARG-KGVKLQGYKDGGVKDIAIFDQAG 697


>gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
 gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45]
          Length = 807

 Score =  565 bits (1456), Expect = e-158,   Method: Composition-based stats.
 Identities = 259/774 (33%), Positives = 394/774 (50%), Gaps = 63/774 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +   +        +  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MNDIVDDPNMNPRN--VAEPLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +  +  ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RRLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL+ L +D+VDFRPNYDG  +EP VL A YPN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTIMAEALLEGLDEDSVDFRPNYDGRLEEPTVLPASYPNLLANGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+GE++D C+ +I  PD   + L+  + GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNIGELIDACLHLIKTPDARDETLLNYVPGPDFPTGGVIVEPRENIAE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R    +E       Q VVTEIPYQV K+ ++E++AEL++ K++  +AD+
Sbjct: 239 AYRTGRGSIRLRAKWEVEDLGRGMWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGIL 358
           RDES      V+    +    DV++N L+R + L+  FS+NM  L +G  P+  +L  +L
Sbjct: 299 RDESAEDVRMVLEPKTKNVDPDVLMNMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA----- 413
           +AF+ FR +V+ RR+++ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A     
Sbjct: 359 RAFLDFRRDVLCRRSRHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYED 418

Query: 414 ----RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT----------------------- 446
                +  + R+ + SD    +  +D  +  +  D                         
Sbjct: 419 WSKPHQATISRATDDSDYVSPLLGVDVKALELRPDPEAVARGVLADEGGPGTIPQRFGGR 478

Query: 447 -MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S       I ++L
Sbjct: 479 SEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASDELQWKRISEQL 538

Query: 506 LSVKDELDTP-----RRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
             VK           R T   E     E   E  I RE + V  S +G++        RA
Sbjct: 539 REVKKSFAKDLDRGARLTSFAEAGEAEEVPLEAMIEREPITVVCSQMGWI--------RA 590

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                     +  +D D    +F   T   +L F + G  Y      LP G  +  G+ L
Sbjct: 591 MTGHIDLNRELKFKDGDGPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGG--RGMGEPL 648

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
             ++ L             +      +  ++ A+  G+      ++ +   R+GK  + +
Sbjct: 649 RLMVDLPNEAE------ILDIFIHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNV 702

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
               +    +  +  + + +  +  + + F    +    GR   GVR      G
Sbjct: 703 KDGVKAKVCKPVSG-DAVAVVGENRKVLVFMADELPEM-GRG-KGVRLQKYKDG 753



 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 27/236 (11%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V+++   D  +  R    A   ++ +  L      +   ++  +++G         IR  
Sbjct: 541 VKKSFAKDLDRGARLTSFAEAGEAEEVPLEAMIEREPITVVC-SQMGW--------IRAM 591

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G   +  R +    GD       V HA+      +             S          
Sbjct: 592 TGHIDL-NRELKFKDGD---GPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGGRGMGEP 647

Query: 777 NDSSVEGNISEERCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
               V+     E         ++ +L  S  G G      +     R+GK +        
Sbjct: 648 LRLMVDLPNEAEILDIFIHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNVKDGVK 707

Query: 836 NEIGALV---AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            ++   V   AV  V +N ++++            +E+    R  KGV +      
Sbjct: 708 AKVCKPVSGDAVAVVGENRKVLV---------FMADELPEMGR-GKGVRLQKYKDG 753


>gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
 gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18]
          Length = 751

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 241/743 (32%), Positives = 370/743 (49%), Gaps = 63/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LLD + +D V FR NYDG  +EP+VL   +PN+L NG  
Sbjct: 118 DGDNAAAYRYTEARMTDVARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD     L++ ++GPDFPTG VI+  R  I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS   R   H E  +     + +TEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGSFRTRAKWHQEDGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDV 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     RVVIE K R    ++++  L+R T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DIRVVIEPKSRAVDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR  Y   +   R  VL G  IA  N+D+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRCSYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L+++Q  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKAFNLTDIQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
            +L  E+K    IL S +     + +++  V++          RRT   +         +
Sbjct: 448 KNLRAELKGINAILKSETEQWAKVAEQVRKVREMFGPKTALGKRRTMFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +      SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWV--------RTLKGHVADLSGLTFKTDDKLGQAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G  Y   V +LP G  +  G+ +   + L+Q                      +
Sbjct: 560 LLFATNGRFYALDVAKLPGG--RGHGEPIRMFIDLDQDA------AIVALFVHTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G        D +   R GK  + ++  +E  +V T +  + + +  +  + + F 
Sbjct: 612 VASHDGQGFIVNEDDCVGNTRKGKQILNVEMPNEARAVCTVSG-DSVAVIGENRKLLIFA 670

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +   A     GVR      G
Sbjct: 671 LDQVPEMA--RGRGVRLQKYKDG 691


>gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1]
 gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1]
          Length = 753

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/744 (32%), Positives = 368/744 (49%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +I+ PD    AL+  ++GPDFPTG +I+     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWAQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K R     +++  L+R T L+S  S+N+  L   + P+   L   
Sbjct: 298 RDESAE-DVRIVIEPKSRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEA 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ +   +   R  VL G  IA  N+DEV+RIIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSNHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L+E+Q  AIL +RL  L  L   +I+ E 
Sbjct: 411 -----------------------PVLMKTFNLTEIQAEAILNMRLRSLRKLEEFEIKKED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM---ED 529
             L  E+K    +L S +     + +++  V++          RRT+  +         +
Sbjct: 448 KDLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +   +  SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWV--------RTLKGHVEDLSGLNFKQDDKLGQSFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y   V +LP G              +     +                  +
Sbjct: 560 LLLATNGRFYALDVAKLPGGRGHGE--------PIRMFIDMEQDAAIVTVFVHTGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRF 708
            A+  G        + +   R GK  + +D  +E  ++   ++ +D + +     + V F
Sbjct: 612 IASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVSEGDDSVAVIGDNRKMVIF 671

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +         GVR      G
Sbjct: 672 PLDQVPEMT--RGRGVRLQKYKDG 693


>gi|238809641|dbj|BAH69431.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 857

 Score =  565 bits (1455), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/804 (28%), Positives = 388/804 (48%), Gaps = 39/804 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++  +   +    I   ++   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M
Sbjct: 2   MNKNQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSM 61

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNK + K AR+ G+V+GKYHPHG+++IY+A+ RMAQDW +   L+E  GN GS+
Sbjct: 62  YELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSI 121

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL   A  ++ DL K+TV F PN+D S +EPVVL +  PN+L+NG  
Sbjct: 122 DDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAK 181

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A I NPDI L  L + ++GPDFPTG V+ G+ GI  A
Sbjct: 182 GIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGGVVYGQQGIYEA 241

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  GRG I +       +   ++  I + EIPY V K+ ++  I  ++ ++ +  + +++
Sbjct: 242 FERGRGRITLVSRYRTFEDKKNKF-IEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIK 300

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D+SDR G  ++I L + A+ +VILN L + T +Q  ++ N VA+    P+   L  +L  
Sbjct: 301 DQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTYNNVAIKNNSPQTLGLNDLLNC 360

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++    +V  +  ++ L K + R  +++G        DEV+ +IR S N +         
Sbjct: 361 YLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSK--------- 411

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                           +            +  Q  AI ELRL +L+   ++    E   L
Sbjct: 412 ----------------AGVIQNLMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEEL 455

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             +IK    +L+ +      + + L  +K +   PRRT I E    +   + D +  E+ 
Sbjct: 456 EKQIKHVEMLLNDKEAFDQYLIETLQEIKKQFGRPRRTTITEEAFKVSYNEADLVKEEET 515

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + V+  GY+KR+   V  +            +++ D +      +T  ++L F++LG  
Sbjct: 516 YIGVTKHGYLKRMSNKVVNSN-----DFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNY 570

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               ++++     +  G  L + + L  GE +   +   +        YV   TK    +
Sbjct: 571 AMVPIYKIEESKWKDFGVHLSDFVELVSGEELVGAINVTDFNIQN---YVCLFTKEAQGK 627

Query: 659 RNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R  L +F     +    AMKL   DE++  +      D+LL TK G    +  + ++   
Sbjct: 628 RVVLKEFEVSRPNKTFTAMKLRKGDELVGAKLSNGYKDVLLITKRGMASLYTENDVQ-IY 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           G  S G +   +   D +++ A+V  H          Y+K +       SG       + 
Sbjct: 687 GTKSNGTKSCYMPPMDSIVAFAMVEAHETLAMLANETYVKRIHVSNITKSGKKNLGKPIF 746

Query: 777 NDSSVEGNISEERCQELKLKEQFI 800
                +  I  +          F+
Sbjct: 747 AQLKTKPYIVTDAYPMTVDDYIFV 770



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLH 743
            +   +E   +  TK G   R   + +       + G++     +GD++I       + +
Sbjct: 507 ADLVKEEETYIGVTKHGYLKRMS-NKVVNSNDFLTYGIK-----EGDKIICFEKSNTINN 560

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                +     M  +         D     S   +      +           + ++   
Sbjct: 561 LLLFTNLGNYAMVPIYKIEESKWKDFGVHLSDFVELVSGEELVGAINVTDFNIQNYVCLF 620

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++  GKR    +F + +R  K   A  +    +   LV     N    ++L++ +G   
Sbjct: 621 TKEAQGKRVVLKEFEV-SRPNKTFTAMKLR---KGDELVGAKLSNGYKDVLLITKRGMAS 676

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               N+++I    + G         + +V+   +   E
Sbjct: 677 LYTENDVQIYGTKSNGTKSCYMPPMDSIVAFAMVEAHE 714



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 96/259 (37%), Gaps = 11/259 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                 + + E +        +  TKHG ++R         N +  +   +   D+I+  
Sbjct: 496 TEEAFKVSYNEADLVKEEETYIGVTKHGYLKRMSNKVV---NSNDFLTYGIKEGDKIICF 552

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHA 744
           E     N++LL T LG     PI  I     ++  GV     + L  G++++    V   
Sbjct: 553 EKSNTINNLLLFTNLGNYAMVPIYKIEESKWKD-FGVHLSDFVELVSGEELVGAINVTDF 611

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           +      + + K    +R ++        +    +       E    +L    + +L ++
Sbjct: 612 NIQNYVCL-FTKEAQGKRVVLKEFEVSRPNKTFTAMKLRKGDELVGAKLSNGYKDVLLIT 670

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G    +   +  +     K    T    +  + ++VA   V  ++ + +++++  + R
Sbjct: 671 KRGMA--SLYTENDVQIYGTK-SNGTKSCYMPPMDSIVAFAMVEAHETLAMLANETYVKR 727

Query: 865 VPVNEIRIASRATKGVVIF 883
           + V+ I  + +   G  IF
Sbjct: 728 IHVSNITKSGKKNLGKPIF 746


>gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
 gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222]
          Length = 747

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 256/746 (34%), Positives = 389/746 (52%), Gaps = 67/746 (8%)

Query: 1   MTEHI----ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M++       +  +  +   TS  ++  +   YLTYA++ I+ RA+PD RDGLKPVHRRI
Sbjct: 1   MSDDPNVPDPTPPDPSQDQTTSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M ++ +     + K A+ISG+VMG YHPHG+AAIYDA+AR+AQ +++R  L++GQGN
Sbjct: 61  LFAMRELRLSPTGAFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGN 120

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FG++DGD PAA RYTE RL  AA  L++ L ++ VDFRPNYDG+ +EP+VL A +PN+L 
Sbjct: 121 FGNIDGDNPAASRYTEARLTAAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLC 180

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRT 235
           NG  GIAVGMATN+P HNL EV+D C+ +I  PD   D L+ I+ GPDFPTG V +  R 
Sbjct: 181 NGASGIAVGMATNVPPHNLHEVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRE 240

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    +E     + QIVVTEIPYQV K+ ++E++AE+++ K++  
Sbjct: 241 TIAEAYRTGRGSLRLRARWSVEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPI 300

Query: 296 IADLRDESDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFT 353
           +AD+RDES     R+V+E +     A+ ++  L+R + L+  F +NM   ++G  P+  +
Sbjct: 301 LADVRDESAE-DIRIVLEPRTRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCS 359

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  +L+AF+  R EV+VRR+ + L+K   R  VL G  IA  NLD V+ IIR   +P+  
Sbjct: 360 LKEVLRAFLDHRREVLVRRSNHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKA- 418

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                                              LS+VQ  AIL +RL  L  L   ++
Sbjct: 419 ----------------------------VMIAEFKLSDVQVEAILNMRLRALRRLEEIEL 450

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL--D 526
           R E  +L  E +    +L+        I +EL   + +         RRT I E     +
Sbjct: 451 RAEHENLTREREGLAAMLADEGAQWARIAEELRETRAKFGKSASGGQRRTEIGEAGEVAE 510

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           ++ +  I RE + V +S +G++        RA +      + V  +D D         T 
Sbjct: 511 IDMDAMIEREPITVILSKMGWI--------RAMKGHQPLDAEVKFKDGDGPFMALHAETT 562

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             ++ F++ G  Y      LP G  +  G+ L  ++ L             +     +  
Sbjct: 563 DKLMVFAANGRFYTLPANNLPGG--RGMGEPLRLMIDLPNDA------AVIDMFPWRDGE 614

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
             + A+K G+      +D +   R+GK  +     +  L        + + +  +  + +
Sbjct: 615 RYLVASKAGDGFVVAGADILAQTRAGKQVLN---GEAALCRRVT--GDHVAVVGQNRKLL 669

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKG 732
            FP+S +   A     GVR      G
Sbjct: 670 VFPLSELPEMA--RGKGVRLQKYKDG 693


>gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419]
 gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419]
          Length = 758

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 379/750 (50%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGQSLLPPSGG-DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  
Sbjct: 120 DGDNAAAYRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGPDFPTGA-VI 231
           GIAVGMAT+IP HN  E+ D  + +I +PD  L+AL+          I GPDFPTG  ++
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIV 239

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             RT +  +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +
Sbjct: 240 ESRTSMMESYRTGRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIAR 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           ++  + D+RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P 
Sbjct: 300 KLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++A R EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P
Sbjct: 360 VMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEP 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                  +I+                L++VQ  AIL +RL  L  L  
Sbjct: 420 K----------------AVMIER-------------FGLTDVQAEAILNMRLRSLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL 525
            +IR E ++L  E  E   +L+S  +    +  E+  VK +         RR+   +   
Sbjct: 451 FEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKKFAKATELGKRRSTFADAPE 510

Query: 526 DM---EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  +  I +E + V +S  G++        RA +      + +  +D D +   F 
Sbjct: 511 ADVEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTTSLQFKDGDALKVSFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F++ G VY     +LP G  +  G+ L  ++ +   + + T          
Sbjct: 563 AQTTDKILIFTTGGKVYTLGSDKLPGG--RGHGEPLRIMVDMENDQDVLTAF------VH 614

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                +V ++  GN      SD +   R GK  M +   DE   V      + + +  + 
Sbjct: 615 DPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKG-DHLAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + + FP++ +   A     GVR      G
Sbjct: 674 RKMLVFPLAQVPEMA--RGKGVRLQRYKDG 701


>gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512]
          Length = 751

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/742 (31%), Positives = 374/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+  + P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL +A  N+DEV+RIIR    P+       
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEPKPVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 -----------------------------DLTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E    +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + +                 ++ 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAV-----LTAFVHDPARKQLIV 616

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  GN      ++ I   R GK  M +   +E   +   +  + + +  +  + + FP+
Sbjct: 617 STA-GNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSG-DHVAVVGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +         GVR      G
Sbjct: 675 AQVPEMT--RGKGVRLQRYKDG 694


>gi|308189673|ref|YP_003922604.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|319776856|ref|YP_004136507.1| topoisomerase iv subunit a [Mycoplasma fermentans M64]
 gi|307624415|gb|ADN68720.1| topoisomerase IV subunit A [Mycoplasma fermentans JER]
 gi|318037931|gb|ADV34130.1| Topoisomerase IV subunit A [Mycoplasma fermentans M64]
          Length = 856

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 233/804 (28%), Positives = 389/804 (48%), Gaps = 39/804 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++  +   +    I   ++   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M
Sbjct: 1   MNKNQENKLNDLLSKIIKENLDTIMADRFSRYSKYIIQQRALPDVRDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++WNK + K AR+ G+V+GKYHPHG+++IY+A+ RMAQDW +   L+E  GN GS+
Sbjct: 61  YELGLQWNKPFKKSARVVGDVIGKYHPHGDSSIYEAMVRMAQDWKMGHTLLEMHGNVGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL   A  ++ DL K+TV F PN+D S +EPVVL +  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTEVRLAALADLVIGDLKKNTVKFAPNFDDSEKEPVVLPSLIPNLLLNGAK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HNL E++D  +A I NPDI L  L + ++GPDFPTG V+ G+ GI  A
Sbjct: 181 GIASGFATEMPPHNLNEILDASIAKIKNPDIQLSKLFKYVKGPDFPTGGVVYGQQGIYEA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           +  GRG I +       + + ++  I + EIPY V K+ ++  I  ++ ++ +  + +++
Sbjct: 241 FERGRGRITLVSRYRTFEDNKNKF-IEINEIPYGVIKSKLVHDIDLIIAKESVSGLLEIK 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D+SDR G  ++I L + A+ +VILN L + T +Q  ++ N VA+    P+   L  +L  
Sbjct: 300 DQSDRNGISILITLDKKANEEVILNYLLQKTEMQIYYTYNNVAIKNNSPQTLGLNDLLNC 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++    +V  +  ++ L K + R  +++G        DEV+ +IR S N +         
Sbjct: 360 YLDHVRDVKRKTLEFDLVKYKARLEIVLGFLKVAEITDEVIAVIRKSENSK--------- 410

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                           +            +  Q  AI ELRL +L+   ++    E   L
Sbjct: 411 ----------------AGVIQNLMNHFGFTLNQATAIAELRLYKLSKTDKEAFLLEKEEL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDM 538
             +IK    +L+ +      + + L  +K +   PRRT I E    +   + D +  E+ 
Sbjct: 455 EKQIKHVEMLLNDKEAFDQYLIETLQEIKKQFGRPRRTTITEEAFKVSYNEADLVKEEET 514

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + V+  GY+KR+   V  +            +++ D +      +T  ++L F++LG  
Sbjct: 515 YIGVTKHGYLKRMSNKVVNSN-----DFLTYGIKEGDKIICFEKSNTINNLLLFTNLGNY 569

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
               ++++     +  G  L + + L  GE +   +   +        YV   TK    +
Sbjct: 570 AMVPIYKIEESKWKDFGVHLSDFVELVSGEELVGAINVTDFNIQN---YVCLFTKEAQGK 626

Query: 659 RNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           R  L +F     +    AMKL   DE++  +      D+LL TK G    +  + ++   
Sbjct: 627 RVVLKEFEVSRPNKTFTAMKLRKGDELVGAKLSNGYKDVLLITKRGMASLYTENDVQ-IY 685

Query: 718 GRNSVGVRGISLAKGDQVISMAIVL-HADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           G  S G +   +   D +++ A+V  H          Y+K +       SG       + 
Sbjct: 686 GTKSNGTKSCYMPPMDSIVAFAMVEAHETLAMLANETYVKRIHVSNITKSGKKNLGKPIF 745

Query: 777 NDSSVEGNISEERCQELKLKEQFI 800
                +  I  +          F+
Sbjct: 746 AQLKTKPYIVTDAYPMTVDDYIFV 769



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA---IVLH 743
            +   +E   +  TK G   R   + +       + G++     +GD++I       + +
Sbjct: 506 ADLVKEEETYIGVTKHGYLKRMS-NKVVNSNDFLTYGIK-----EGDKIICFEKSNTINN 559

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                +     M  +         D     S   +      +           + ++   
Sbjct: 560 LLLFTNLGNYAMVPIYKIEESKWKDFGVHLSDFVELVSGEELVGAINVTDFNIQNYVCLF 619

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           +++  GKR    +F + +R  K   A  +    +   LV     N    ++L++ +G   
Sbjct: 620 TKEAQGKRVVLKEFEV-SRPNKTFTAMKLR---KGDELVGAKLSNGYKDVLLITKRGMAS 675

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
               N+++I    + G         + +V+   +   E
Sbjct: 676 LYTENDVQIYGTKSNGTKSCYMPPMDSIVAFAMVEAHE 713



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 96/259 (37%), Gaps = 11/259 (4%)

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
                 + + E +        +  TKHG ++R         N +  +   +   D+I+  
Sbjct: 495 TEEAFKVSYNEADLVKEEETYIGVTKHGYLKRMSNKVV---NSNDFLTYGIKEGDKIICF 551

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHA 744
           E     N++LL T LG     PI  I     ++  GV     + L  G++++    V   
Sbjct: 552 EKSNTINNLLLFTNLGNYAMVPIYKIEESKWKD-FGVHLSDFVELVSGEELVGAINVTDF 610

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           +      + + K    +R ++        +    +       E    +L    + +L ++
Sbjct: 611 NIQNYVCL-FTKEAQGKRVVLKEFEVSRPNKTFTAMKLRKGDELVGAKLSNGYKDVLLIT 669

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           ++G    +   +  +     K    T    +  + ++VA   V  ++ + +++++  + R
Sbjct: 670 KRGMA--SLYTENDVQIYGTK-SNGTKSCYMPPMDSIVAFAMVEAHETLAMLANETYVKR 726

Query: 865 VPVNEIRIASRATKGVVIF 883
           + V+ I  + +   G  IF
Sbjct: 727 IHVSNITKSGKKNLGKPIF 745


>gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
 gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652]
          Length = 751

 Score =  564 bits (1454), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/742 (32%), Positives = 374/742 (50%), Gaps = 58/742 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + I+     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGQEILPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+     + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  NEMGLRPTSAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 241 SYRTGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDI 300

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R     +++  +++ T L+S F +NM  L+  + P+   L  +L
Sbjct: 301 RDESAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVL 360

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+       
Sbjct: 361 KEWLDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARW 420

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 421 -----------------------------DLTDNQVEAILNMRLRALRKLEEFEIRKEFD 451

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +     E    +
Sbjct: 452 ELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQ 511

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +      + +  ++ D +   F   T   +L
Sbjct: 512 AMIEKEPITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKIL 563

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  +     +LP G  +  G+ L  ++ ++  + +                 ++ 
Sbjct: 564 IVTTGGKAFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAV-----LTAFVHDPARKQLIV 616

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           +T  GN      ++ I   R GK  M +   +E   +   +  + + +  +  + + FP+
Sbjct: 617 STA-GNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSG-DHVAVVGENRKLLVFPL 674

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + +         GVR      G
Sbjct: 675 AQVPEMT--RGKGVRLQRYKDG 694


>gi|261337210|ref|ZP_05965094.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
 gi|270277558|gb|EFA23412.1| putative DNA gyrase subunit A [Bifidobacterium gallicum DSM 20093]
          Length = 933

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 276/915 (30%), Positives = 416/915 (45%), Gaps = 129/915 (14%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                ++ I    + +EM  S+L YA +VI  RA+PD RDG+KPV RRI++ M QM +  
Sbjct: 13  DPRTVKEHIVETPLNEEMSTSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMHLLP 72

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N+ Y+K AR+ GEVMGK HPHG++AIY+A+ R+AQ +++RL L++G GNFGS+D D PAA
Sbjct: 73  NRPYMKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAA 131

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL  AA  +  ++ +DTVDF PNYD   +EP VL A  PN+LVNG  GIAVGMA
Sbjct: 132 SRYTEARLAPAALGMNANIDEDTVDFTPNYDNKLKEPTVLPAAIPNLLVNGASGIAVGMA 191

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TN+ THNLGEVV     V+ +PD  LD LME + GPD+P G +I+GR GI++AY  GRG+
Sbjct: 192 TNMATHNLGEVVAAAKYVMKHPDASLDTLMEYVPGPDWPGGGIIIGRDGIRDAYRDGRGT 251

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQ 306
           +  R  +H+E  +  ++ IVVTE+PY V    +LE+I+E V+  ++  I+   D +D   
Sbjct: 252 VTTRATTHMENVTARKKAIVVTELPYMVGPERVLERISEGVKNHKLEGISGAIDLTDRHN 311

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+K G   D +L QL ++T LQ  F++N VAL   +P    L  +L  ++  R 
Sbjct: 312 GTRIVIEIKTGYDPDAVLVQLLKHTPLQENFTINNVALVDGRPHTLGLRAMLDVWIDHRR 371

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RR++Y   KA +R H++ GL +A+ ++DEV+ +IR S + +TA+  LMQ       
Sbjct: 372 NVIRRRSEYRRAKALERLHLVDGLLMALIDIDEVIEVIRTSQDADTAKSRLMQ------- 424

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L ++Q + IL+LRL RLT + R ++  E + L   I E
Sbjct: 425 -------------------VFDLDDIQAQYILDLRLRRLTKMSRIELETERDDLRRSIAE 465

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI------------- 533
              IL+S   L  ++ +E+       +TPRRT +++   D                    
Sbjct: 466 LEGILASAQALDEVVVREMDEAVAAYNTPRRTVLLDTADDGTLHPVSAHGDDTLSASALS 525

Query: 534 -----------------------------------VREDMVVTVSHLGYVKRVPLSVYRA 558
                                                E  V+ +S  G + RVP+   +A
Sbjct: 526 AARKAQTLQATAQEVHEASKAKGNDAANMVQALQIEDEPCVIALSASGLIARVPV---QA 582

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
                  RS +     D V   F  +T +     +S G +       LP  +        
Sbjct: 583 LSVLEGRRSDMPRTAHDMVRCAFATTTRSDYALITSAGRLVLAHAVELPSLALATVD--G 640

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +  + L  G     ++   +     +   V+ A   GN      S  +  N +   A   
Sbjct: 641 VTNVDLTGGIHAEELIGATQHTDPIDGERVIAAVPMGNANTTARS--VNTNDTDNAA--- 695

Query: 679 DSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           DS D   + +  T       + L T+ G   R+   A       +      I L  GD+V
Sbjct: 696 DSGDTSATADAPTTPAQLAPLALGTRRGLVKRWNREAPTTMDSWS-----VIDLKDGDEV 750

Query: 736 ISMAIVLHADA-------------DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           ++                      D        ++      +   +  E  +       E
Sbjct: 751 LAARDAPDGSRLVFVSSDSSLLTFDAKHVRPQGRNSGGMAGIRLAEGCEAIAFSVVEPQE 810

Query: 783 GNISEERCQELKLKEQ-------------FILTV---------SEKGFGKRTSSYDFRIS 820
                E   E    +               +LTV         +E G  K T    +   
Sbjct: 811 LPWIPEEPVEDGTSQPADGIDTVFHATGAVVLTVAGDADALAGTENGSAKITPLSLYPTK 870

Query: 821 NRSGKGIRATDVSKI 835
            R+  G+R+    K 
Sbjct: 871 GRATGGVRSQRFLKG 885


>gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
 gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii
           ATCC 43553]
          Length = 776

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 258/764 (33%), Positives = 368/764 (48%), Gaps = 76/764 (9%)

Query: 1   MTEHIIS------SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
           MT+            + +     ++++    + +YL YA++V+ GRA+PD+ DG KPV R
Sbjct: 1   MTDSNQPGLFDSTPPDGDGDANAAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQR 60

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQ
Sbjct: 61  RILFAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQ 120

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS DGD  AA RYTE RL   A  LLD+L + TVDF PNYDGS QEP +L AR P +
Sbjct: 121 GNFGSRDGDNAAAMRYTEARLTPIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVM 180

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IP HNL EV   CVA+I  P +    L  +I GPDF  G  I+  
Sbjct: 181 LLNGASGIAVGMATEIPPHNLREVAQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITP 240

Query: 235 -TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
              I   Y TGRGS+ +R     E+ +  + Q+V+TE+P   +   +LE+I E+   K  
Sbjct: 241 AADIAQIYGTGRGSLKVRARWTFEEMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVK 300

Query: 294 VDIADLRDE-------------------SDRQGYRVVIELKRGA-SADVILNQLYRYTSL 333
                L  E                         R+V E K      D  +N L   TS+
Sbjct: 301 SGKKSLTPEQTQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSM 360

Query: 334 QSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +S  S+N+V +    +P +  L  IL  +VAFR   VVRRT++ L+K  DR HVL G  +
Sbjct: 361 ESSSSINLVCIGTDGRPRQKGLRDILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRML 420

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
              N+DEV++ IR S  P   R  LM+R                            LSE 
Sbjct: 421 VYLNVDEVIQTIRESDEP---RAALMER--------------------------FKLSER 451

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q   ILE+RL +L  L    I  EL     +     ++L + + L  ++ +E+ +   + 
Sbjct: 452 QAEDILEMRLRQLARLEGFKIEQELADKRKDQISLQELLDNPTTLKRLLIKEIEADAKQY 511

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I         E  ++ E + V VS  G++        RA++  G   S    +
Sbjct: 512 GDERRTLIE-TAERAVLETKVLDEPVTVIVSQKGWL--------RARQGHGHDASQFTFK 562

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             D +   F   T  +++     G VY   V  LP       G+ +  ++ L  G RI  
Sbjct: 563 QGDDLYGAFECRTTDTLIAMGDNGRVYSVPVGGLPSARGD--GQPVTTMIDLESGTRIVH 620

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCT 691
            +    +         + AT+ G     KLSD +   R+GK  + L++ DE+L  V    
Sbjct: 621 TIAAAPESRW------LLATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFE 674

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
               + L +  G+ + F +   +  +G    G   + L   D++
Sbjct: 675 GATHLALLSAKGKFLVFGLDECKSLSG-GGRGTILMGLDASDKL 717


>gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16]
 gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16]
          Length = 780

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 257/823 (31%), Positives = 391/823 (47%), Gaps = 78/823 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +     +E  +     +++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +
Sbjct: 5   DITFQPEEPADS----LTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   +  LLD++ + TVDF PNYDGS QEP +L AR P VL+NG  GI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGASGI 180

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
           AVGMAT IP HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+   + I   Y
Sbjct: 181 AVGMATEIPPHNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQIY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA---- 297
             GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K          
Sbjct: 241 EGGRGSLKVRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTQ 300

Query: 298 --------------DLRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM 341
                          +RDES +    R+V E K +       ++ L  +TSL+S   +N+
Sbjct: 301 DQQQLKATVLAVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPINL 360

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  L  IL  ++AFR + V RRT++ L K  DR H+L G  + + N+DEV
Sbjct: 361 VMIGTDGRPRQKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEV 420

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A                                   LS+ Q   ILE+
Sbjct: 421 IRIIRESDEPKPA-----------------------------LIEAFGLSDRQAEDILEI 451

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPR 516
           RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +       PR
Sbjct: 452 RLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRRRIIKEIETDAKQYSPEDKDPR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I E       E  ++ E + V +S  G+V        R ++  G        +  D 
Sbjct: 512 RTLIQEERRA-AAEVRVIDEPVTVVMSQKGWV--------RTRQGHGHDAQQFTFKAGDA 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T   +L F + G VY   V  LP G     G  +  ++ L  G ++      
Sbjct: 563 LYGTFECRTVDVLLVFGTNGRVYSVPVASLPGGRGD--GVPITTLIELQSGSQVAHTFAG 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             ++       ++ AT  GN  + K+ D I   + GK  + LD  D  L       +   
Sbjct: 621 SAEQR------MLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGDTPLAPAPIGDEATH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ +   +  ++V +     GV  I L   ++++    V              
Sbjct: 675 VACLSGNGRLLLVALDEVKVLSA-GGRGVILIELEPKEKLLQAVGVGAPGLMLSGAGRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           K  S +   ++         +   ++E  + E R   ++++  
Sbjct: 734 KPTSQKLAGVALQAYVGKRARKGKAIEAKLKEPRIDPVRVEPP 776



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 8/166 (4%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +   GD +         D           +      L  G  + +          G  S
Sbjct: 555 FTFKAGDALYGTFECRTVDVLLVFGTNGRVYSVPVASLPGGRGDGVPITTLIELQSG--S 612

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYD-FRISNRSGKGIRATDVSKINEIGALVAVF 845
           +         EQ +L  +  G G +T   D        GK     D    +    L    
Sbjct: 613 QVAHTFAGSAEQRMLIATAGGNGFQTKVGDMISRQK-GGKSFLTLD----DGDTPLAPAP 667

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             ++   +  +S  G L+ V ++E+++ S   +GV++      E++
Sbjct: 668 IGDEATHVACLSGNGRLLLVALDEVKVLSAGGRGVILIELEPKEKL 713


>gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
 gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1]
          Length = 739

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 228/730 (31%), Positives = 369/730 (50%), Gaps = 58/730 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++  ++    +    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+++ M Q+ +
Sbjct: 1   MNMPDDMIGRVEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLRL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +  + KCARI G+V+GKYHPHG++A Y+AL R+AQD++ R  L++GQGNFG++DGD  
Sbjct: 61  DPDAGFKKCARIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDGA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL + A  +L+ +  D VD RP Y+    EP VL A +PN+L NG  GIAVG
Sbjct: 121 AAYRYTEARLTEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATG 244
           MAT+IP HN G+V D  +A+I+NP  D   L++ ++GPDFPTG + +  R  +  AY TG
Sbjct: 181 MATSIPPHNAGQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG   +R   H E       +I++TEIPYQV KA ++E++A L+ EK++  +AD+RDES 
Sbjct: 241 RGGFRVRARWHKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDEST 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
               R+V+E K R  + DV++  ++R T+L+S F +NM  L+    P    +  +L+ ++
Sbjct: 301 ET-VRIVLEPKSRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R EV++RR+ + L     R  +L G  +   NLDEV+RI+R    P+ A         
Sbjct: 360 DHRHEVLIRRSTHRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAA--------- 410

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+++Q  ++L +RL  L  L   +IR E   L  
Sbjct: 411 --------------------LIAAFSLTDMQAESVLNMRLRSLRKLEEMEIRREHAKLSK 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT----PRRTRIVEGLLDMED--EDCIVRE 536
           E K+   +L S       I  E+ +V+D+  +     RRT I      +E   E  + RE
Sbjct: 451 ERKDLDALLKSEPLRWKRIAHEVAAVRDQFGSGKLGDRRTDIAGPPATVEVAAEAFVERE 510

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S  G++        RA +        +  ++ D +       T   +   ++ G
Sbjct: 511 PITVILSEKGWM--------RALKGHIADTVELRFKEGDALRFALPCETTDRLCLLATNG 562

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y  K   LP G    +   L+                             +  +  G 
Sbjct: 563 KAYTLKAADLPRGRGDGQPVRLLAGFGNEDD--------VIALLVPKEEARYLLVSSAGR 614

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
               + +D +   R+G+ A+ +   +E        + + + + ++  + + FP+  +   
Sbjct: 615 GFVIRGADLLAEKRTGRQALNVKPGEEAAFC-VPAEGDHVAVISESRKLLVFPLEQVPEM 673

Query: 717 AGRNSVGVRG 726
           A R + GV  
Sbjct: 674 A-RGA-GVIL 681


>gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
 gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM
           3776]
          Length = 781

 Score =  564 bits (1453), Expect = e-158,   Method: Composition-based stats.
 Identities = 268/856 (31%), Positives = 421/856 (49%), Gaps = 114/856 (13%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ-MGVEWN 68
           E +E  I    I+ E +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M + + +  +
Sbjct: 3   ENQEDRIQFREISSETRRRYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEELRLMAD 62

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
            K  KCA+ISG+  G YHPHGN ++YD L R+AQD++LR  L++GQGNFGS+ G P AAE
Sbjct: 63  AKTRKCAKISGDTTGNYHPHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGLPAAAE 122

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  L+++L  DTV+ RPNYDG+ +EPVVL  R+PN+LVNG  GIAVGMAT
Sbjct: 123 RYTEARLTGIAEQLMNELRFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIAVGMAT 182

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGS 247
           N+P HNL EV++ C+ +I NP+     L++ I+GPDFP G  +   R  +   Y  GRG+
Sbjct: 183 NMPPHNLKEVLEACIHLITNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYEEGRGA 242

Query: 248 IVIRGVSHI--EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-D 304
             +R    +  EK +   +++V+  +PY V    +L +I  ++  +++  + +  DE+ D
Sbjct: 243 FKVRAEWRMDKEKRAEVEDRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAADETDD 302

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-----KPERFTLIGILK 359
           + G RVV+ELK+G+  + ++  LY+ T L+  F+ N   L         P R  L  +L 
Sbjct: 303 KHGLRVVLELKKGSDPESVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPLHRLLG 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            F+ FR +VV +R ++ L++ + R H+L GL I    +D+ ++IIR S     A  +LM 
Sbjct: 363 EFLKFRLKVVKKRFQFQLDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDACDKLMA 422

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L E QT AILE++L R++ L  D +  ELN+
Sbjct: 423 --------------------------AFPLDEPQTMAILEMQLYRISQLEIDTVLAELNT 456

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
              E      IL+   R+  +I+ EL  + ++    RRT +       + ++   IVRE+
Sbjct: 457 KQKEADRITRILAKDDRIWNVIEGELRELSEQFGDKRRTTLGSSDEVTEFDESHYIVREN 516

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             V +S  G++KRV            +      +R+ D V D+   ST   V+FF+S G 
Sbjct: 517 TNVVLSKDGWIKRVGRL---------QSVESTRVREGDQVLDVLPGSTVDHVIFFASDGI 567

Query: 598 VYKEKVWRLPIG-------SPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNLYVV 649
            Y   + ++P+        +   + K  + ++ ++    R T +     + +     ++ 
Sbjct: 568 AYTMPISQVPVSSGYGEPLTKHYKFKDGVQVIAAVTTDPRFTAVAEETAEGAEPAPPHLF 627

Query: 650 FATKHGNVRRNKLSDFIQ-INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
             T  G V R  L  F     RSG+   KL   D +  VE    +  + L T+  + + F
Sbjct: 628 VTTAQGQVMRVPLQPFRTASTRSGRKFCKLQEGDVVAKVELIVDQTSVFLVTREARLIHF 687

Query: 709 PISAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            +  I V +G    GVRGI L   + D V+  A++         ++   K ++       
Sbjct: 688 SLEEIPVLSG-AGKGVRGIRLEEKEKDLVLGAALMSRPSDVLRLKLANEKELTC------ 740

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                                   G  K      + ++ R GKG
Sbjct: 741 ----------------------------------------GQMK------YALTTRGGKG 754

Query: 827 IRATDVSKINEIGALV 842
           +    VS  +++G +V
Sbjct: 755 V---KVSHRSQVGEIV 767



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 77/243 (31%), Gaps = 50/243 (20%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  +K G ++R               + ++   D++L V   +  + ++     G     
Sbjct: 519 VVLSKDGWIKRV-------GRLQSVESTRVREGDQVLDVLPGSTVDHVIFFASDGIAYTM 571

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           PIS + V +G      +      G QVI+                               
Sbjct: 572 PISQVPVSSGYGEPLTKHYKFKDGVQVIAAVTTDP------------------------- 606

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGI 827
                           ++EE  +  +     +   + +G   R     FR  S RSG+  
Sbjct: 607 ------------RFTAVAEETAEGAEPAPPHLFVTTAQGQVMRVPLQPFRTASTRSGR-- 652

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
                 K+ E   +  V  + D   + LV+ +  LI   + EI + S A KGV      +
Sbjct: 653 ---KFCKLQEGDVVAKVELIVDQTSVFLVTREARLIHFSLEEIPVLSGAGKGVRGIRLEE 709

Query: 888 DER 890
            E+
Sbjct: 710 KEK 712


>gi|260437350|ref|ZP_05791166.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810262|gb|EFF69467.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876]
          Length = 761

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 240/757 (31%), Positives = 390/757 (51%), Gaps = 43/757 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     +D MQ SY+ Y+++VI  RA+PD+RDGLKPV RR+L+ M ++G+ ++K + K
Sbjct: 3   ETILKTEYSDVMQKSYIDYSMSVITARAVPDVRDGLKPVQRRVLYAMNELGLNYDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  + QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDAMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDVAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K    + L DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGM T+IPT
Sbjct: 123 RLKKFTQDVYLKDLDKDVVDFVPNFDETEKEPSVLPVRVPNLLINGAEGIAVGMTTSIPT 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV++G  A +DN DI    LME I GPDFPTG +++ ++ + + Y +G G + +RG
Sbjct: 183 HNLTEVINGVEAYLDNEDITTAELMEYIPGPDFPTGGIVINKSELADIYESGVGKVKVRG 242

Query: 253 VSHIE--KTSGDREQIVVTEIPYQ---VNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               E  K   D++++V+TEIPY          +  + +L+  K+  DI D+ +ES ++G
Sbjct: 243 KVVFEPGKKKTDKDKLVITEIPYTMIGTGIGKFISDVVDLIETKKTQDITDISNESSKEG 302

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A    + + LY+ T L+  F VNM+ +   +PE   L  I++  V F+ E
Sbjct: 303 IRIVLELKKNADVKKLEHLLYKKTKLEDTFGVNMLTIADGRPEVLGLRDIIRYNVEFQYE 362

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+   LL K  D   +  GL  A   +D ++ I+R S N + A+  L+         
Sbjct: 363 INTRKYTTLLKKEYDNKEIKEGLIKACNIIDLIIEILRGSTNLKQAKNCLISGDTEG--- 419

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                +   S  +      ++ +E Q  AILELRL +L GL  + +  E       I E 
Sbjct: 420 -----IRFKSDKSEKDAKKLHFTERQATAILELRLYKLIGLEIEALEKEYEETLARIAEY 474

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL S+  +   IK++L  +K E    R T I +G + + +E   V +++V  +   GY
Sbjct: 475 EEILGSKKVMKKTIKKDLERIKKEYGMERLTVIEDGEVAVYEEPKFVEQEVVFIMDRFGY 534

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K +  + +   +                   +F       +  F+  G +++ KV  +P
Sbjct: 535 AKTIDTASFERNKET----------IYAENKYVFKCLNTEKICIFTDNGNLHQVKVVNIP 584

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G  + N+ + N        +   +          +F TK G ++    S+F  
Sbjct: 585 FTKFRDKGTPIDNLGNYNSAGEEIIYLCASK---QLEGRKFLFVTKQGMMKLVDGSEFDA 641

Query: 668 INRSGKIAMKLDSRDEILSVETCT--------------QENDILLTTKLGQCVRFPISAI 713
             ++     KL+  D I  +                      ++L T+ G  ++FP++ I
Sbjct: 642 SKKTVAST-KLNIGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNEI 700

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
                +++ GVRGI L K D++  + ++        +
Sbjct: 701 PEKK-KSAAGVRGIKLEKEDKIAEVYLIPENADISID 736



 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 22/151 (14%)

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           D         + +  G      C   +L+ +  L V+++G  K     +F  S       
Sbjct: 590 DKGTPIDNLGNYNSAGEEIIYLCASKQLEGRKFLFVTKQGMMKLVDGSEFDASK------ 643

Query: 828 RATDVSKINEIGALVAVFPVND---------------NDQIILVSDKGTLIRVPVNEIRI 872
           +    +K+N IG  +A+  V D               +  ++L ++ G  ++ P+NEI  
Sbjct: 644 KTVASTKLN-IGDSIAMIHVTDAVSEITLESDGTIISSQTVVLQTENGYFLKFPLNEIPE 702

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             ++  GV      K++++  V  I E+  +
Sbjct: 703 KKKSAAGVRGIKLEKEDKIAEVYLIPENADI 733


>gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T]
 gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T]
          Length = 814

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 237/737 (32%), Positives = 368/737 (49%), Gaps = 70/737 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+  RA+P + DGLKPV RRILF M +M +    K+VK AR+ G+
Sbjct: 69  LDRYAERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVVGD 128

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL   A 
Sbjct: 129 VIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAE 188

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNL EV +
Sbjct: 189 LLLSEIDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVAE 248

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKT 259
               +I +P+  LD ++ ++ GPDFP G  ++     I+ AYATGRGS+ +R    IE+ 
Sbjct: 249 ATCHLIRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIEEL 308

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE----------------- 302
           +  + + +V E+P+ V+ A +L +I  L   +      ++  E                 
Sbjct: 309 ARGQWRAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTVRD 368

Query: 303 --SDRQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
             SD+   R+V+E K    + D  +  L  +TSL++  SVNM  +    +P++  L+ IL
Sbjct: 369 ESSDKAPVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQIL 428

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RRT++ L++   R H+L G  IA  +++EV+R+IR S  P+ A     
Sbjct: 429 REWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPA----- 483

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         LS+VQ   ILE+RL +L  L    I  EL 
Sbjct: 484 ------------------------LIAAFGLSDVQAEDILEIRLRQLARLEGFKIEKELA 519

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L SR+ +  +I +E+     +    RRT +         E  +  E +
Sbjct: 520 ELKDERAGLQHLLDSRAAMTKLILKEIQDDAKKYGDDRRTLVEAVAAVAPAEISVPDEPV 579

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V VS  G+V        R+++  G   +G+  +  DF   +    T   ++     G  
Sbjct: 580 TVIVSKNGWV--------RSRQGHGIDPAGIAYKAGDFGFAVLETRTTWPLIVIDGNGRA 631

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV  LP G              +             +  +   +    FA   G   
Sbjct: 632 YTVKVSELPGGRGDGA--------PITTLVEFQDGGKLAQVVTDTPDSVYFFANSGGYGF 683

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
              ++D     R+GK  M L+  +++L+       + I   ++ G+ + FP   ++  +G
Sbjct: 684 LCSVADASSRQRAGKAFMSLEKGEKVLAPAKVFG-DWIAAASENGRILVFPRPEMKTQSG 742

Query: 719 RNSVGVRGISLAKGDQV 735
               GV  ++L +G+ +
Sbjct: 743 --GRGVIVMALDEGEAL 757



 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 26/198 (13%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGV--RGISLAKGDQVISMAIVLHADADYDERICYM 755
           + +K G         +R   G    G+   GI+   GD     A++          I   
Sbjct: 582 IVSKNGW--------VRSRQG---HGIDPAGIAYKAGDF--GFAVLETRTTWPLIVIDGN 628

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                 +           +         +  +         +      +  G+G   S  
Sbjct: 629 GRAYTVKVSELPGGRGDGAPITTLVEFQDGGKLAQVVTDTPDSVYFFANSGGYGFLCSVA 688

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA-- 873
           D     R+GK         + +   ++A   V   D I   S+ G ++  P  E++    
Sbjct: 689 DASSRQRAGK-----AFMSLEKGEKVLAPAKVF-GDWIAAASENGRILVFPRPEMKTQSG 742

Query: 874 SRATKGVVIFSTAKDERV 891
            R   GV++ +  + E +
Sbjct: 743 GR---GVIVMALDEGEAL 757


>gi|218133090|ref|ZP_03461894.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991963|gb|EEC57967.1| hypothetical protein BACPEC_00952 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  564 bits (1452), Expect = e-158,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 406/765 (53%), Gaps = 51/765 (6%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++ MQ SY+ Y+++VI  RA+PD RDGLKPV RR+L+ M Q+G+ ++K + K
Sbjct: 10  EQIVKTEYSELMQKSYIDYSMSVITARALPDARDGLKPVQRRVLYAMDQLGLNYDKPHRK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  + QD+   + L++G GNFGS++GD  AA RYTE 
Sbjct: 70  SARIVGDTMGKYHPHGDSSIYETLVVLEQDFKKGMALVDGHGNFGSIEGDGAAAMRYTEA 129

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L+K    + L DL KD VDF PN+D + +EP VL  R PN+L+NG  GIAVGM TNIPT
Sbjct: 130 KLKKFTQDVYLADLDKDVVDFIPNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTNIPT 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD C A +D+ +I  + LME + GPDFPTG +++ ++ +   Y +G G I +RG
Sbjct: 190 HNLGEVVDACCAYMDDENITTEGLMEYVIGPDFPTGGLVVNKSELPAIYESGTGKIKLRG 249

Query: 253 VSHIEK--TSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
               E      +R+++V+TEIPY +  A + +    + +LV  K+  DI D+ +ES ++G
Sbjct: 250 KVVFEPAAKKSERDKLVITEIPYTMIGANIGKFLSDVIDLVETKKTSDIVDISNESSKEG 309

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELKR A  + + N LY+ T L+  F VNM+A+   KPE   L  I+K  + F+ +
Sbjct: 310 IRIVLELKRNADVEKLKNMLYKKTKLEDTFGVNMLAIVDGKPETLGLKSIIKHHIDFQYQ 369

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  R+   LL + RD   +  GL  A   +D ++ I+R   N   A+  L+  +      
Sbjct: 370 LATRKYNTLLARERDNKEIQEGLIKACDIIDLIIEILRGCKNRSQAKDCLVNGNVK---- 425

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
               D+   S  +  +   ++ +E Q  AILELRL RL GL   +++ +      +I E 
Sbjct: 426 ----DINFKSETSRKAASGLHFTERQASAILELRLYRLIGLEILELQKQYEQTLKKIAEY 481

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
             IL SR+ +  +IK++L ++K E   PR+T I +    + +E+ +  +++V  +   GY
Sbjct: 482 EKILGSRTAMKNVIKKDLQAIKKEYALPRKTVIEDAKAAVFEEEKVKEQEVVFIMDRFGY 541

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K + ++ Y                  +    +F       +  F+  G +++ KV  LP
Sbjct: 542 SKTIDIAAYERNMEA----------VHNENKYIFKCMNTDKIYIFTDNGNLHQIKVMDLP 591

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               + +G  + N+ + +        +    + +      ++F TK G ++    S+F  
Sbjct: 592 FTKFRDKGVPIDNVGNYDSSGENIVFLSAAGNITGCK---LLFVTKQGMMKLVDTSEFEA 648

Query: 668 INRSGKIAMKLDSRDEILSVE----------------------TCTQENDILLTTKLGQC 705
                  A KL   D I ++                             ++++ T+ G  
Sbjct: 649 SK-KTVAATKLADGDSIAAILKTDATVEVYSRFNYDGSMAEDEVIESSQNVVVRTENGVF 707

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
           ++FP++ I     +N+VGVRGI L K D V  + ++ + +    E
Sbjct: 708 LKFPLTEI-PQKKKNAVGVRGIKLVKDDTVDDVYLIGNTEDVSTE 751



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 22/123 (17%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV-------------------SKINEIGA 840
           +L V+++G  K   + +F  S    K + AT +                   S+ N  G+
Sbjct: 629 LLFVTKQGMMKLVDTSEFEASK---KTVAATKLADGDSIAAILKTDATVEVYSRFNYDGS 685

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +     +  +  +++ ++ G  ++ P+ EI    +   GV      KD+ V  V  I  +
Sbjct: 686 MAEDEVIESSQNVVVRTENGVFLKFPLTEIPQKKKNAVGVRGIKLVKDDTVDDVYLIGNT 745

Query: 901 EIV 903
           E V
Sbjct: 746 EDV 748


>gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
 gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021]
 gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C]
          Length = 758

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/750 (32%), Positives = 374/750 (49%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGQSLLPPSGG-DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  
Sbjct: 120 DGDNAAAYRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGPDFPTGA-VI 231
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+          I GPDFPTG  ++
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIV 239

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             R  +  +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +
Sbjct: 240 ESRASMAESYRTGRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIAR 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           ++  + D+RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P 
Sbjct: 300 KLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++A R EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P
Sbjct: 360 VMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEP 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                  +I+                L++VQ  AIL +RL  L  L  
Sbjct: 420 K----------------AVMIER-------------FGLTDVQAEAILNMRLRSLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL 525
            +IR E +SL  E  E   +L+S  +    +  E+  VK +         RR+   +   
Sbjct: 451 FEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPD 510

Query: 526 DM---EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  +  I +E + V +S  G++        RA +      S +  +D D +   F 
Sbjct: 511 ADVEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F++ G  Y     +LP G  +  G+ L  ++ +   + +            
Sbjct: 563 AQTTDKILIFTTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDV-----LTAFVHD 615

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                +V +T  GN      SD +   R GK  M +   DE   V      + + +  + 
Sbjct: 616 PARKLIVSSTA-GNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG-DHLAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + + FP+  +   A     GVR      G
Sbjct: 674 RKMLVFPLVQVPEMA--RGKGVRLQRYKDG 701


>gi|293363538|ref|ZP_06610294.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
 gi|292552887|gb|EFF41641.1| DNA gyrase/topoisomerase IV, A subunit [Mycoplasma alligatoris
           A21JP2]
          Length = 880

 Score =  563 bits (1451), Expect = e-158,   Method: Composition-based stats.
 Identities = 251/823 (30%), Positives = 421/823 (51%), Gaps = 50/823 (6%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            ++++ + I + S+   M   +  Y+  +I  RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   ENQQKLEKIINNSLDKIMAEKFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTS 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K AR+ G+V+GKYHPHG+ ++YDA+  M+Q W   + L++  GN GS+D DP AA
Sbjct: 64  DKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKNGIALLDMHGNVGSLDNDPAAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K  +++LDDL K+TV F PN+D S +EP VL + +PN+LVNG  GIA+GMA
Sbjct: 124 MRYTEVRMSKICNYMLDDLKKNTVSFIPNFDDSEKEPSVLPSIFPNLLVNGTTGIAIGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG--- 244
           T +P HNL EV++  +A +  P I LD LME I+GPDFPTG +I G  GI  A+  G   
Sbjct: 184 TEMPPHNLNEVLEATIAKLKRPTITLDGLMEHIKGPDFPTGGIIYGNKGIFEAFYNGKLD 243

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +  I +     +++T  + + I +TEIP+ V K+ ++  I  L+  + I  + +++D+SD
Sbjct: 244 KEKIKLFSNYTVKQTDKN-KLIEITEIPFGVVKSQLVYDIDVLINNESIDGLLEIKDQSD 302

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VI L + A+ + I++ L + TS+Q  +S N V ++   P+   L  +L A++A 
Sbjct: 303 REGIRIVITLSKDANEESIISFLLQKTSMQVNYSYNNVVISNNSPKLMNLNELLDAYIAH 362

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            ++V  +   Y  NK   R  +++G        D V+++IR S                +
Sbjct: 363 IKDVKTKTLTYDYNKYLLRLEIVLGFLKVAEITDAVIKVIRNSE------------GSKS 410

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             IK L +             +   S+ Q  AI ELRL RL+   +     E   L   I
Sbjct: 411 GVIKALKE-------------SFGFSQNQATAIAELRLYRLSKTDKQAFLIEKAELEKNI 457

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTV 542
               ++LS   + +G + + L  +  E+ TPR+T+I   E   + + +D +  E + ++ 
Sbjct: 458 ANIKELLSDEKKFVGYLIELLRGIIKEIPTPRKTQIVAEEFSFNHDKKDLVKEEIVNISF 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  GY+KR+   +  +           ++++ED +      +T  ++L F++LG      
Sbjct: 518 SKNGYIKRLSQKIIDSNSPE-----SYMLKEEDNLVFFDKSNTMHNILIFTNLGNYAIIP 572

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+++     +  G  L + ++L  GE I  ++   +        YVV  +K G  ++  +
Sbjct: 573 VYKILESKWKDLGTHLSDFVALYPGESIVNVIDVEDWNV---GDYVVIMSKQGYAKKTLI 629

Query: 663 SDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           SDF     +    A+K+D  DEI++V       DIL+ T +G   ++  + +    G  +
Sbjct: 630 SDFEVSRINKSYTALKIDKNDEIVNVALSDGTKDILIVTAMGYTSKYNENDLN-IYGPKA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADA-DYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
            G + + L+  D V S  +V   D         Y K M A+  L    T +   +  +  
Sbjct: 689 KGSKAVYLSNKDYVASFEMVKFNDTVSMLTDDGYFKKMKAKDILYVPKTNKGKEIFKNRK 748

Query: 781 VEGNISEERCQELKLKEQF-------ILTVSEKGFGKRTSSYD 816
           +      +    L   E +       IL  S  G+ K + + +
Sbjct: 749 LNPFFVTDMFSSLNETEFWIKTETNEILLQSSLGY-KLSKNDE 790



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 64/178 (35%), Gaps = 7/178 (3%)

Query: 729 LAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L + D ++       + +     +     +  +         D     S         +I
Sbjct: 541 LKEEDNLVFFDKSNTMHNILIFTNLGNYAIIPVYKILESKWKDLGTHLSDFVALYPGESI 600

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E      +++ +S++G+ K+T   DF + +R  K   A  +   ++   +V V 
Sbjct: 601 VNVIDVEDWNVGDYVVIMSKQGYAKKTLISDFEV-SRINKSYTALKI---DKNDEIVNVA 656

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             +    I++V+  G   +   N++ I     KG      +  + V S E ++ ++ V
Sbjct: 657 LSDGTKDILIVTAMGYTSKYNENDLNIYGPKAKGSKAVYLSNKDYVASFEMVKFNDTV 714



 Score = 45.9 bits (107), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 91/239 (38%), Gaps = 11/239 (4%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +  +K+G ++R         +    +   L   D ++  +     ++IL+ T LG     
Sbjct: 515 ISFSKNGYIKRLSQKIIDSNSPESYM---LKEEDNLVFFDKSNTMHNILIFTNLGNYAII 571

Query: 709 PISAIRVFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           P+  I     ++ +G      ++L  G+ ++++  V   +   D  +   K   A++ LI
Sbjct: 572 PVYKILESKWKD-LGTHLSDFVALYPGESIVNVIDVEDWNVG-DYVVIMSKQGYAKKTLI 629

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
           S       +    +       E     L    + IL V+  G+  + +  D  I     K
Sbjct: 630 SDFEVSRINKSYTALKIDKNDEIVNVALSDGTKDILIVTAMGYTSKYNENDLNIYGPKAK 689

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           G +A  +S       + +   V  ND + +++D G   ++   +I    +  KG  IF 
Sbjct: 690 GSKAVYLSNK---DYVASFEMVKFNDTVSMLTDDGYFKKMKAKDILYVPKTNKGKEIFK 745


>gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
 gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83]
          Length = 758

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/750 (32%), Positives = 374/750 (49%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGQSLLPPSGG-DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++ + A  LL+ + +D VDFRP Y+   QEP VL   +PN+L NG  
Sbjct: 120 DGDNAAAYRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGPDFPTGA-VI 231
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+          I GPDFPTG  ++
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIV 239

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             R  +  +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +
Sbjct: 240 ESRASMAESYRTGRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIAR 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           ++  + D+RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P 
Sbjct: 300 KLPLLEDIRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPR 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++A R EV+ RR+++ L     R  +L G  IA  N+DEV+RIIR    P
Sbjct: 360 VMALNEVLSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEP 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           +                  +I+                L++VQ  AIL +RL  L  L  
Sbjct: 420 K----------------AVMIER-------------FGLTDVQAEAILNMRLRSLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL 525
            +IR E +SL  E  E   +L+S  +    +  E+  VK +         RR+   +   
Sbjct: 451 FEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKRRSTFSDAPD 510

Query: 526 DM---EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  +  I +E + V +S  G++        RA +      S +  +D D +   F 
Sbjct: 511 ADVEAIQQAMIEKEPITVVISEKGWI--------RALKGHIADTSSLQFKDGDGLKVSFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L F++ G  Y     +LP G  +  G+ L  ++ +   + +            
Sbjct: 563 AQTTDKILIFTTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDV-----LTAFVHD 615

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                +V +T  GN      SD +   R GK  M +   DE   V      + + +  + 
Sbjct: 616 PARKLIVSSTA-GNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG-DHLAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + + FP+  +   A     GVR      G
Sbjct: 674 RKMLVFPLVQVPEMA--RGKGVRLQRYKDG 701


>gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
 gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5]
 gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301]
          Length = 744

 Score =  563 bits (1450), Expect = e-158,   Method: Composition-based stats.
 Identities = 236/742 (31%), Positives = 368/742 (49%), Gaps = 68/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++         +    +   +   YL YA++ I+ R++PD+RDGLKPVHRR++F M
Sbjct: 1   MPDDLL-------GNVQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + KCAR+ G+VMGK+HPHG+ +IY+AL R+AQD++ R  LIEGQGNFG++
Sbjct: 54  RQLRLDPGSGFKKCARVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LL+ + +D VDFRP YD    EPVVL   +PN+L NG  
Sbjct: 114 DGDNAAAMRYTESRLTEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAA 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+    + +I +P+ D  AL++ ++GPDFPTG   +  R  + +
Sbjct: 174 GIAVGMATSIPPHNAAELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLS 233

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS+ +R         G   QIVVTEIPYQV K+ ++E++A+L+ E+++  + D+
Sbjct: 234 AYETGRGSLRVRARWSRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDI 293

Query: 300 RDESDRQGYRVVIELKRGAS---ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           RDES     RV I L+  +     D+++  L+R T+ +  FS+NM  L+    P    L 
Sbjct: 294 RDESTE---RVRIVLEPKSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLR 350

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+A++  R EV+ RR+++ L     R  +L G      NLDEV+RIIR    P+ A  
Sbjct: 351 EMLRAWLDHRHEVLERRSRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPA-- 408

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            L++ Q  AIL +RL  L  L   +IR 
Sbjct: 409 ---------------------------LIAAFTLTDTQAEAILNMRLRSLRKLEEMEIRK 441

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL---DTPRRTRIV--EGLLDMEDE 530
           E  +L  E K    +L+  ++    I+ E+ +           RRT I     + ++  E
Sbjct: 442 EHKALTAERKALDAMLADPAKRWARIETEIEATAKTFGGGPGARRTTISGAVPVTEVAVE 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      + +  ++ D +  L   S+   V 
Sbjct: 502 ALVEREPLTVILSEKGWI--------RALKGHAVAEAELKFKEGDRLKALLRCSSLDRVT 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G VY  +   LP G    +   L+  L                  +     Y+V 
Sbjct: 554 VFATNGRVYSLRAADLPRGRGDGQAIRLMVDLGNEDEVAAL-------FIADPEARYLVA 606

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            T  G       ++     R+GK  + +    E +        + + +  +  + + FP+
Sbjct: 607 GT-DGRGFIIAGAELGAEKRTGKQILTVRPGQEAMLCRKVAG-DHLAVIGQNRKLLVFPL 664

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
             +   A R + GV       G
Sbjct: 665 EQVPEMA-RGA-GVILQKYKDG 684


>gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
 gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS]
          Length = 772

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 252/814 (30%), Positives = 375/814 (46%), Gaps = 73/814 (8%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +S  EE  + +    +    + +YL YAI+V+ GRA+PD+ DG KPV RRIL+ M ++
Sbjct: 9   DQLSPAEEPRETLM---LASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNEL 65

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +  + K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+G GNFGS DGD
Sbjct: 66  RLAPDAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGD 125

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL+++G+ TV+F+ NYDGS QEP  L AR P  L+NG  GIA
Sbjct: 126 GAAAMRYTEARLTPIARLLLEEIGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNGASGIA 185

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYA 242
           VG+AT IP+HNL EV +   A+I NP I  D LMEI+ GPDFP G  I+     I   Y 
Sbjct: 186 VGLATEIPSHNLNEVAEAAKALIRNPKISHDELMEILPGPDFPGGGQIITAPHAISEIYR 245

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRGS+ +R    IE+ +  + Q VVTE+P   +   +LE+I E+   K       L  E
Sbjct: 246 NGRGSLKVRARWKIEELARGQWQAVVTELPPGTSAQKVLEEIEEITNPKVRNGKKALSPE 305

Query: 303 -------------------SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMV 342
                              S     R+V+E K    +    +  L  +TSL+    VN+V
Sbjct: 306 QISLRQQFLGMLDAVRDEASRDAPVRLVLEPKSKRINPGEFMQSLLAHTSLECNTPVNLV 365

Query: 343 AL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
            +    +P + +L  ILK ++ FR   V  RT + L +  DR H+L G    + N+D V+
Sbjct: 366 MIGIDGRPRQKSLSDILKEWIEFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLNIDRVI 425

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           RIIR S  P+TA                                T  LSE Q   ILE+R
Sbjct: 426 RIIRESDEPKTA-----------------------------LIETFRLSEKQADDILEIR 456

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L +L  L +  I  EL  L  E +   D+L + + +  ++ +E+ + + +    RRT I 
Sbjct: 457 LRQLARLEKIRIEQELAELRREKETLHDLLDNPASMKRLVIREIEADRKKFGDIRRTLIE 516

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                   E  I  E + V VS  G+V        R +   G   SG+  +  D +   +
Sbjct: 517 -EAEKAVVEPKIADEPVTVIVSQNGWV--------RQRTGHGLTLSGLSFKSGDSLLAAY 567

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
              +   +L FSS G +Y   V  LP G              +                +
Sbjct: 568 ECRSTDLLLAFSSTGRIYTVAVHALPGGRGDGM--------PITTFAETGIDETIVRYFA 619

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTT 700
              +  V+ +T  G     K++D     R+GK  + L+  + +L  V     +  I   +
Sbjct: 620 GSPDTTVLISTDSGYGFSAKVADMSSRVRNGKSFISLEKDETLLPPVAISPDDKWIGALS 679

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
             G  + F ++ +R        GV  + L KGD++++   V         +       + 
Sbjct: 680 GNGHLLLFDMTELRALLS-GGRGVILMGLEKGDKLMAARPVSEKGCTVVCQARNGNPYTV 738

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +    + +       +    VE   +    + +K
Sbjct: 739 RIAGGAIEAHLGKRARKGKPVESRFTPVMLENIK 772



 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 87/252 (34%), Gaps = 41/252 (16%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           K G++RR  + +  +     KIA      DE ++V          + ++ G         
Sbjct: 506 KFGDIRRTLIEEAEKAVVEPKIA------DEPVTV----------IVSQNGW-------- 541

Query: 713 IRVFAGRNSVGVR--GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +R    R   G+   G+S   GD +++       D           +  A   L  G  +
Sbjct: 542 VRQ---RTGHGLTLSGLSFKSGDSLLAAYECRSTDLLLAFSSTGRIYTVAVHALPGGRGD 598

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +       +                +  +L  ++ G+G      D     R+GK   + 
Sbjct: 599 GMPITTFAETGIDETIVRYFA--GSPDTTVLISTDSGYGFSAKVADMSSRVRNGKSFISL 656

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA---SRATKGVVIFSTAK 887
           +  +       VA+ P  D+  I  +S  G L+   + E+R      R   GV++    K
Sbjct: 657 EKDETLL--PPVAISP--DDKWIGALSGNGHLLLFDMTELRALLSGGR---GVILMGLEK 709

Query: 888 DERVVSVERIRE 899
            +++++   + E
Sbjct: 710 GDKLMAARPVSE 721


>gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
 gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2]
          Length = 753

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/744 (31%), Positives = 362/744 (48%), Gaps = 63/744 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + K A+I G+VMG +HPHG+ +IYDAL R+AQD+S R  L++GQGNFG++
Sbjct: 58  RLLRLDPGTPFKKSAKIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LLD + +D V FRPNYDG  +EPVVL   +PN+L NG  
Sbjct: 118 DGDNPAAYRYTEARMTDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP HN  E+ D  + +ID PD    AL+  ++GPDFPTG +++     I  
Sbjct: 178 GIAVGMATAIPPHNAAELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG+   R     E+ +     +VVTEIP+ V K+ ++EKIAEL+ EK++  + D+
Sbjct: 238 AYTTGRGAFRTRAKWMQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDI 297

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     RVVIE K R     +++  L+R T L+S   +N+  L   + P+   L   
Sbjct: 298 RDESAE-DVRVVIEPKSRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAEC 356

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+      
Sbjct: 357 LREWLDHLRDVLLRRSNYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPK------ 410

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L++VQ  AIL +RL  L  L   +IR E 
Sbjct: 411 -----------------------PVLMKAFNLTDVQAEAILNMRLRSLRKLEEFEIRTED 447

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM---ED 529
            +L  E+K    IL S +     + +++  V++          RRT+  +         +
Sbjct: 448 KNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRRTQFADAPEHDLAAIE 507

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  + RE + V +S  G+V        R  +      SG+  + +D +   F   T + +
Sbjct: 508 EAFVEREPVTVVISDKGWV--------RTLKGHVADLSGLNFKQDDKLDRAFFAETTSKL 559

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y  +V +LP G              +     +                  +
Sbjct: 560 LLLATNGRFYSLEVAKLPGGRGHGE--------PIRMFIDMEQDAAIVAMFVHKGGRKFL 611

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCTQENDILLTTKLGQCVRF 708
            A+  G        D +   R GK  + +    +           +++ +     + + F
Sbjct: 612 IASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALTVVGDGSDNVAVIGDNRKMLIF 671

Query: 709 PISAIRVFAGRNSVGVRGISLAKG 732
           P+  +   A     GVR      G
Sbjct: 672 PLDQVPEMA--RGRGVRLQKYKDG 693


>gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15]
 gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15]
          Length = 759

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 247/737 (33%), Positives = 381/737 (51%), Gaps = 69/737 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    +T+ +   YL YA++ I  RA+PD+RDGLKPVHRR+L+ M  M +  +    KC
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ GEVMG +HPHG+A+IYDAL R+AQ++S R+ L+EGQGNFG++DGD  AA RYTEC+
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +AA  LLD + +D VDFRP YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGV 253
             E++D C  ++ NPD     L+E + GPDFPTG  ++  R  +   Y TGRG + +R  
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES     R+V+E
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAE-DIRLVLE 315

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEVVVR 371
            K +    +V++  L++ ++L+S F VN+  L+         +   L AF+A R EV+ R
Sbjct: 316 PKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L K   R H+L GL IA  NLDEV+RI+R+   P   + +L++            
Sbjct: 376 RARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKP---KEKLIE------------ 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T  L+++Q  AIL  RL +L  L   +IR E   L  E    L +L
Sbjct: 421 --------------TFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILAML 466

Query: 492 SSRSRLLGIIKQELLSVKDEL-------------DTPRRTRIVEGLLDMED---EDCIVR 535
           +S ++   ++   L  V+  L                 R+   E      D   E  IVR
Sbjct: 467 ASEAKQWKLVGVGLSEVRAALLKIKHPLDKPAPTGVTGRSVFGEAPQVDADAAIEAMIVR 526

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + + +S  G++        RA +      S +  ++ D +  L    T   +L FSS 
Sbjct: 527 EPITIILSERGWI--------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKLLIFSSD 578

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +     +LP    +  G+ +  ++ L+   +I  + PF            + A+K G
Sbjct: 579 GRFFTLGCDKLPSA--RGHGEPVRMMIELDDKVKIIDVFPFKAGRKR------ILASKGG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
                   + +   ++GK  + +   +E  +       + + +    G+ + FP+  +  
Sbjct: 631 YGFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIFPLEELPE 688

Query: 716 FAGRNSVGVRGISLAKG 732
                  GV+  +  +G
Sbjct: 689 MP--RGKGVKLQAYREG 703



 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 18/192 (9%)

Query: 704 QCVRFPISAIRVFAG--RNSVGVRG----ISLAKGDQVISMAIVLHADADYDERICYMKH 757
             VR PI+ I    G  R + G       +   +GD++    +               + 
Sbjct: 523 MIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDKL-GFLVPAETTDKLLIFSSDGRF 581

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            +     +         ++    ++  +        K   + IL  S+ G+G      + 
Sbjct: 582 FTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRIL-ASKGGYGFLMPEEE- 639

Query: 818 RISNR-SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            ++NR +GK      V  +   GA   +  V   DQ+ ++ D G ++  P+ E+    R 
Sbjct: 640 ALANRKAGK-----QVLNVGNEGAAFCLEAV--GDQLAVIGDNGKILIFPLEELPEMPR- 691

Query: 877 TKGVVIFSTAKD 888
            KGV + +  + 
Sbjct: 692 GKGVKLQAYREG 703


>gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
 gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58]
          Length = 750

 Score =  562 bits (1449), Expect = e-158,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 374/745 (50%), Gaps = 59/745 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKDLVPPSGG-DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 120 DGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+E I GPD PTG  +I  R  I +
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILD 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 240 AYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R   A +++  L+R + L+S   +NM  L+  K P+   L  +L
Sbjct: 300 RDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEVL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A R++V+VRR+++ L     R  +L GL IA  NLDEV+RIIR    P+       
Sbjct: 360 SEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQVMMARW 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 420 S-----------------------------LTDNQAEAILNMRLRNLRKLEEFEIRKEHD 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---EDE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +          +
Sbjct: 451 DLSKEKSEIEGLLASDDKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAIQQ 510

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +      S +  ++ D     F   T   +L
Sbjct: 511 AMIEKEPVTIVISQKGWI--------RALKGHMSDTSALTFKEGDGPKLAFPAQTTDKLL 562

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y     +LP G  +  G+ +  ++ +   + I T            +  ++ 
Sbjct: 563 LLTTGGKAYTLGADKLPGG--RGHGEPIRIMVDMENDQDILTAF------VHDPSRKLLL 614

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  GN      S+ I   R GK  M +   DE       T  + + +  +  + + FP+
Sbjct: 615 VSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTG-DHVAVVGENRKLLAFPL 673

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQV 735
           S +   +     GVR      G  V
Sbjct: 674 SQVPEMS--RGKGVRLQRYKDGGVV 696


>gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
 gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199]
          Length = 744

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 250/778 (32%), Positives = 382/778 (49%), Gaps = 63/778 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT   +         I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M
Sbjct: 1   MTTTSVEDPPP----IHDTWLADALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + K AR+ G+VMGK+HPHG+++IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 57  RQLRLDPGSGFKKSARVVGDVMGKFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD + +DTVDFR  YDG  +EPVVL + +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARLTEVAALLLDGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQ 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+      +I +P+   + L+E++ GPD PTG V +  R  +  
Sbjct: 177 GIAVGMATSIPPHNVDELCTALQHLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R    +E       QIVVTEIPYQV K+ ++E++AEL++ +++  + D+
Sbjct: 237 AYRTGRGSFRVRAKWEVEPLKNGTWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDI 296

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E K R    DV++  L+R T L+S  S+N+  L+    P   +L   
Sbjct: 297 RDESAM-DIRLVLEPKSRNVDPDVLMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREA 355

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+AF+  R++V+VRRT++ L K   R  VL G  IA  NLDE++RI+R    P+      
Sbjct: 356 LQAFLDHRQDVLVRRTRHRLEKIAHRLEVLGGYLIAYLNLDEIIRIVREEDEPKAVMMR- 414

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  LS+VQ  AIL +RL  L  L   +IR E 
Sbjct: 415 ----------------------------TFELSDVQAEAILNMRLRALRRLEEIEIRKEF 446

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI--VEGLLDMEDE 530
            +L  E  +   +L+  +R    +  +L  ++           RRT I      + +  E
Sbjct: 447 ENLSAERDDLTALLNDDARQWRAVSDQLGEIRRGFGKTTEIGRRRTVIGSTPNPVVVPTE 506

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V  S  G++        RA +        V  ++ D         T   +L
Sbjct: 507 ALVEREPITVICSEKGWI--------RALKGHIGLDQEVKYKEGDGERFRLHAETTDKIL 558

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F++ G  Y     +LP G  +  G+ L  ++ L   E +  I P+   +       ++ 
Sbjct: 559 VFATDGRFYTIGGDKLPSG--RGHGEPLRLMIDLANDEDVVAIRPYRTGDR------LLV 610

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  G      + D +   R+GK  + +DS        T    + + +     + + F  
Sbjct: 611 ASSEGRGFVVPVDDVVAQTRAGKQVLVVDSGARANICVTVAG-DTVAVVGTNRKLLVFDA 669

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           + I         GV       G  +    +    D          +       +  G 
Sbjct: 670 ADIPEMV--RGKGVILQKYKPGGHLADAVVFKAEDGLSWVLQGGRRRTEPDLGVWRGK 725



 Score = 40.5 bits (93), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 7/106 (6%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
              +L  S +G G      D     R+GK +   D            +      D + +V
Sbjct: 605 GDRLLVASSEGRGFVVPVDDVVAQTRAGKQVLVVDSGAR------ANICVTVAGDTVAVV 658

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                L+     +I    R  KGV++        +      +  + 
Sbjct: 659 GTNRKLLVFDAADIPEMVR-GKGVILQKYKPGGHLADAVVFKAEDG 703


>gi|331001825|ref|ZP_08325347.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412799|gb|EGG92182.1| hypothetical protein HMPREF0491_00209 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 745

 Score =  562 bits (1448), Expect = e-158,   Method: Composition-based stats.
 Identities = 238/740 (32%), Positives = 397/740 (53%), Gaps = 32/740 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SYL Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  ++ + K
Sbjct: 3   EKILRTEYSEEMQKSYLDYSMSVITARAIPDARDGLKPVQRRVLYDMSELRIFSDRPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  ++QD+   + LI+G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALIDGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           +L K    + L DL K TVDF  NYD + +EP VL  R PN+L+NG  GIAVGM+T+IPT
Sbjct: 123 KLAKFTEEVYLKDLDK-TVDFISNYDETEKEPAVLPVRVPNLLINGAEGIAVGMSTSIPT 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV + C+A I N +ID   L+EI+ GPDFPTG +I  +  + + Y TG G + IRG
Sbjct: 182 HNLLEVCNTCIAYIKNRNIDTKGLLEILHGPDFPTGGIIANKKDLFDIYDTGNGKLKIRG 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              +E  +   D+++++++EIPY +  A + +    +A LV  K++ D+ D+ ++SD+ G
Sbjct: 242 KIEVELGRKKSDKDKLIISEIPYTMIGAGINKFLVDVANLVESKKLSDVVDISNQSDKNG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+V+ELK+ A  + I N LY+ T L+  F VNM+A+   +PE  +L  ILK ++ F+ E
Sbjct: 302 TRIVLELKKDADIEKIKNILYKKTKLEDTFGVNMLAIVDGRPEILSLRDILKNYLDFQYE 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  ++   LLNK  ++  +  GL  AV  +D ++ I+R S N   A++ L+       + 
Sbjct: 362 ITTKKYNILLNKELEKKEIQEGLIRAVDVIDIIIAILRGSKNLTQAKKCLISGDTTGINF 421

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K                  +  +E Q +AIL++RL +L GL  + +  +  +    I++ 
Sbjct: 422 KV--------KTFEKDAKKLSFTEKQAQAILDMRLYKLIGLEIEALLKDNAATLKNIEDY 473

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL     +  +  ++L  +K +    R+T I +    +  E+ +  E+++  +   GY
Sbjct: 474 ENILKDHKNMDKLFIKDLEKIKRDFALQRKTLIEDAKEAIYIEEPLASEEVIFVMDKFGY 533

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K      +    +            E     +F V     V  FS+ G +YK KV  LP
Sbjct: 534 CKVYDRGTFDKNAQA----------VESENIYVFPVMNTDKVCIFSNTGILYKIKVIDLP 583

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
           +   + +G  + N+   +        +     E S     ++  TK G +++    +F  
Sbjct: 584 LSKLRDKGTPIDNLTKFDSSTEE---ILLAVSEDSMRGNSILMLTKKGFIKKVSCEEFKT 640

Query: 668 INRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            N     + KL + D +++V+  +     DI + +  G  +RF IS +  F  +++ G +
Sbjct: 641 -NNKQVASTKLTNDDVLIAVKMISSGINTDIFIISDAGYILRFNISEVNEFK-KSTRGEK 698

Query: 726 GISLAKGDQVISMAIVLHAD 745
            ++L   + +  + ++    
Sbjct: 699 AMTLGYNEYIKELYLLNDTG 718



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +  I Y   +         D                       E  ++   IL +++KG
Sbjct: 569 SNTGILYKIKVIDLPLSKLRDKGTPIDNLTKFDSSTEEILLAVSEDSMRGNSILMLTKKG 628

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--NDQIILVSDKGTLIRV 865
           F K+ S  +F+ +N   K + +T ++       L+AV  ++   N  I ++SD G ++R 
Sbjct: 629 FIKKVSCEEFKTNN---KQVASTKLT---NDDVLIAVKMISSGINTDIFIISDAGYILRF 682

Query: 866 PVNEIRIASRATKGVVIFSTAKDERV 891
            ++E+    ++T+G    +   +E +
Sbjct: 683 NISEVNEFKKSTRGEKAMTLGYNEYI 708


>gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15]
 gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000]
 gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15]
 gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000]
          Length = 759

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 249/737 (33%), Positives = 381/737 (51%), Gaps = 69/737 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    +T+ +   YL YA++ I  RA+PD+RDGLKPVHRR+L+ M  M +  +    KC
Sbjct: 17  RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A++ GEVMG +HPHG+A+IYDAL R+AQ++S R+ L+EGQGNFG++DGD  AA RYTEC+
Sbjct: 77  AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECK 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + +AA  LLD + +D VDFRP YDG  +EPVVL + +PN+L NG  GIAVGMAT+IP HN
Sbjct: 137 MTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGV 253
             E++D C  ++ NPD     L+E + GPDFPTG VI   R  +   Y TGRG + +R  
Sbjct: 197 AAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D+RDES     R+V+E
Sbjct: 257 WEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAE-DIRLVLE 315

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEVVVR 371
            K +    +V++  L++ ++L+S F VN+  L+         +   L AF+A R EV+ R
Sbjct: 316 PKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTR 375

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L K   R H+L GL IA  NLDEV+RI+R+   P   + +L++            
Sbjct: 376 RARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKP---KEKLIE------------ 420

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         T  L+++Q  AIL  RL +L  L   +IR E   L  E    L +L
Sbjct: 421 --------------TFGLTDIQADAILNTRLRQLAKLEEMEIRREHAELVEERDGILAML 466

Query: 492 SSRSRLLGIIKQELLSVKDEL-------------DTPRRTRIVEGLLDMED---EDCIVR 535
           +S ++   ++   L  V+  L                 R+   E      D   E  IVR
Sbjct: 467 ASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGRSVFGEAPQVDADAAIEAMIVR 526

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + + +S  G++        RA +      S +  ++ D +  L    T   +L FSS 
Sbjct: 527 EPITIILSERGWI--------RAAKGKIDDPSELKFKEGDKLGFLVPAETTDKLLIFSSD 578

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +     +LP    +  G+ +  ++ L+   +I  + PF            + A+K G
Sbjct: 579 GRFFTLGCDKLPSA--RGHGEPVRMMIELDDKVKIIDVFPFKAGRKR------ILASKGG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
                   + +   ++GK  + +   +E  +       + + +    G+ + FP+  +  
Sbjct: 631 YGFLMPEEEALANRKAGKQVLNV--GNEGAAFCLEAVGDQLAVIGDNGKILIFPLEELPE 688

Query: 716 FAGRNSVGVRGISLAKG 732
                  GV+  +  +G
Sbjct: 689 MP--RGKGVKLQAYREG 703



 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 18/192 (9%)

Query: 704 QCVRFPISAIRVFAG--RNSVGVRG----ISLAKGDQVISMAIVLHADADYDERICYMKH 757
             VR PI+ I    G  R + G       +   +GD++    +               + 
Sbjct: 523 MIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDKL-GFLVPAETTDKLLIFSSDGRF 581

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            +     +         ++    ++  +        K   + IL  S+ G+G      + 
Sbjct: 582 FTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRIL-ASKGGYGFLMPEEE- 639

Query: 818 RISNR-SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            ++NR +GK      V  +   GA   +  V   DQ+ ++ D G ++  P+ E+    R 
Sbjct: 640 ALANRKAGK-----QVLNVGNEGAAFCLEAV--GDQLAVIGDNGKILIFPLEELPEMPR- 691

Query: 877 TKGVVIFSTAKD 888
            KGV + +  + 
Sbjct: 692 GKGVKLQAYREG 703


>gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
 gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242]
          Length = 754

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 229/727 (31%), Positives = 355/727 (48%), Gaps = 60/727 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V + + ++  YL YA++ I  RA+PD RDGLKPVHRRIL+GM  + ++    + KCA+
Sbjct: 21  TPVDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPFKKCAK 80

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+VMG +HPHG+ AIYDAL R+AQD+S R  L++GQGNFG++DGD  AA RYTE R+ 
Sbjct: 81  IVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMT 140

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LL+ + +D +DF+PNY G  +EP+VL +  PN+L NG  GIAVGMAT+IP HNL 
Sbjct: 141 SVARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIPPHNLA 200

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSH 255
           E+ D  + +I + +   + L+  ++GPDFPTG +I+  R  I  AY TGRGS  +R    
Sbjct: 201 ELCDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRVRARWT 260

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+        VVTEIPY V K+ ++EK+AEL+ E+++  +AD+RDES     R+V+E +
Sbjct: 261 KEELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDESAE-DVRIVLEPR 319

Query: 316 -RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRT 373
            R   A +++  L++ + L++ F +NM  L     P   +L   L+ ++  R EV+ RR+
Sbjct: 320 SRNIDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREVLQRRS 379

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L     R   L G+ I   NLDEV+RIIR   + +                      
Sbjct: 380 RHRLAAILRRIEQLEGMIIVFLNLDEVIRIIREEDDAKG--------------------- 418

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+++Q   IL+ RL  L  L   ++R EL  L  E  +   +L+ 
Sbjct: 419 --------ELKKAFKLTDLQVDYILDTRLRSLRKLEEMELRRELKELTDERADIEALLAD 470

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DEDCIVREDMVVTVSHL 545
             R    I  ++  +K           RRT   +    ++    E  I RE + V VS  
Sbjct: 471 DGRQWKTIAAQVRELKKIYGPQTEIGKRRTTFEDAPAAVDLDLAEAMIEREPITVVVSKK 530

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +   +  S +  + +D +   F   T + +L  ++ G  Y     +
Sbjct: 531 GWI--------RALKGHVQDLSTLQFKGDDELDTSFFAQTTSKILVLATNGKAYTLDASK 582

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G        L   +  +                      ++     G        D 
Sbjct: 583 LPGGRGHGEPIRLFADIDEDA--------SVARVLPHEPQASLLLVADDGRGFVVAQDDL 634

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           +   + G+  + ++     L V T    + + +  +  + + FP+      A     GVR
Sbjct: 635 LSSTKKGRAVLNVEPPAR-LKVVTEAAGDHVAIIGENRKLLVFPLEEAPRMA--RGKGVR 691

Query: 726 GISLAKG 732
                 G
Sbjct: 692 MQRYKDG 698


>gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
 gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13]
          Length = 772

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 254/822 (30%), Positives = 379/822 (46%), Gaps = 78/822 (9%)

Query: 1   MTE-----HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MTE       +  D+E ++ +    +    + +YL YAI+V+ GRA+PD+ DG KPV RR
Sbjct: 1   MTEQPTLFDQLPPDDEHKESLM---LASFAERAYLDYAISVVKGRALPDVCDGQKPVQRR 57

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M ++ ++   K  K A + G+V+GK HPHG+ ++YDAL RMAQD+S+R  LI+G G
Sbjct: 58  ILYAMNELRLDSEAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHG 117

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS DGD  AA RYTE RL   A  LL+++ + TV+F+ NYDGS QEP +L AR P  L
Sbjct: 118 NFGSRDGDGAAAMRYTEARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTL 177

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-R 234
           +NG  GIAVGMAT IP+HNL EV    VA+I NP I    LMEII GPDFP G  I+   
Sbjct: 178 LNGASGIAVGMATEIPSHNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAP 237

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I   Y  GRGS+ +R    IE+ +  + Q VV+E+P   +   +LE+I E+   K   
Sbjct: 238 NTISEIYENGRGSVKVRARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRA 297

Query: 295 DIADLRDE-------------------SDRQGYRVVIELKRG-ASADVILNQLYRYTSLQ 334
               L  E                   S     R+V+E K    + D  +  L  +TSL+
Sbjct: 298 GKKALSAEQVALRQQFLGILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLE 357

Query: 335 SLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
               VN+V +    +P +  L  I+  ++ FR   V RRT + L +  DR H+L G    
Sbjct: 358 CNAPVNLVMIGIDGRPRQKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETV 417

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + N+D V+ IIR S  P+ A                                   LSE Q
Sbjct: 418 LLNIDAVIHIIRESDEPKAA-----------------------------LIDAFQLSERQ 448

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              ILE+RL +L  L +  I  EL  L  E K   D+L + S +  +I +E+ + + +  
Sbjct: 449 ADDILEIRLRQLARLEKIRIEQELAELRKEKKGLHDLLDNPSSMKRLIIREIEADRKKYG 508

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRT I         E  IV E + V +S  G+V        R +   G   S +  + 
Sbjct: 509 DARRTLIE-EAERATAEQKIVDEPVTVIISQNGWV--------RQRTGHGLNLSAITFKS 559

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +   F   +   +L FSS G +Y   V +LP G            + +++       
Sbjct: 560 GDNLFSSFECRSTDFLLAFSSTGRIYTIPVHQLPGGRGDGMPITTFAEIGIDE------- 612

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ- 692
               +   S  +  V+ +   G     K SD +   R+GK  + L+  + +L      + 
Sbjct: 613 -TIVQYLVSSPDKSVLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDGETLLPPLVIPEA 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
              I + ++ G+ + F  + +RV +     GV  + L KG+++ +   V           
Sbjct: 672 SKSIGVLSEKGRFLLFDATELRVLSS-GGHGVILMGLDKGEKIRATLPVDDNGCLVICMA 730

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                   +      +T      +    VE   +    + +K
Sbjct: 731 KNDNRYEVRISGNQIETYTGKRARKGKPVETRFTPASLENIK 772



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 77/209 (36%), Gaps = 17/209 (8%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +    V  +++G VR+         +     A+   S D + S   C   + +L  +  G
Sbjct: 529 DEPVTVIISQNGWVRQ------RTGHGLNLSAITFKSGDNLFSSFECRSTDFLLAFSSTG 582

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQR 762
           +    P+  +    GR      G+ +    ++ I   IV +  +  D+ +          
Sbjct: 583 RIYTIPVHQLP--GGRGD----GMPITTFAEIGIDETIVQYLVSSPDKSVLLSMDSGYGF 636

Query: 763 RLISGDT-EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
              + D    + + K+  S+E   +      +    + I  +SEKG      + + R+ +
Sbjct: 637 AAKTSDMMSRVRNGKSFISLEDGETLLPPLVIPEASKSIGVLSEKGRFLLFDATELRVLS 696

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDN 850
             G G+    + K  +   + A  PV+DN
Sbjct: 697 SGGHGVILMGLDKGEK---IRATLPVDDN 722


>gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1]
 gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum
           aromaticum EbN1]
          Length = 786

 Score =  562 bits (1448), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/753 (32%), Positives = 384/753 (50%), Gaps = 74/753 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            + +    + +YL YA++V+  RA+P + DG+KPV RRIL+ M +M +    K+VK AR+
Sbjct: 34  PLPLDRHAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAASKHVKSARV 93

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ ++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL  
Sbjct: 94  VGDVIGKYHPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTP 153

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL ++ + TVDF PNYDG+F EP +L AR P VL+NG  GIAVGMAT IP HNL E
Sbjct: 154 IAELLLAEIDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLRE 213

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V D    +I +PD  LD ++ ++ GPDFP G   I     I++AYA GRGS+ +R   H+
Sbjct: 214 VADAVCHLIRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGSLRMRARWHV 273

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-------------- 302
           E+ +  + ++++ E+P+ V+ A++L  I  L   +      D+  E              
Sbjct: 274 EELARGQWRVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLKQLVLGVLET 333

Query: 303 -----SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVAL-----NGYKPER 351
                SD+   R+V+E +    + D  +  L  +TSL++  SVNM  +     +G +P++
Sbjct: 334 VRDESSDKSPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHGPVHGGRPQQ 393

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L+ IL+ ++ FR   V RRT++ L++   R H+L G  IA  ++++V+R+IR S  P+
Sbjct: 394 KNLVQILREWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIRVIRESDEPK 453

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A                                   LSE+Q   ILE+RL +L  L   
Sbjct: 454 PA-----------------------------LIDAFGLSEIQAEDILEIRLRQLARLEGF 484

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED 531
            I  EL  L  E ++   +L SR+ +  +I +E+     +    RRT I         E 
Sbjct: 485 RIEKELAELKEEREKLQHLLDSRAAMTKLILKEITDDAKKYGDERRTLIESVAAVAPAEI 544

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E + V VS  G+V        RA++  G   + V  +  DF   L    +   ++ 
Sbjct: 545 SVPDEPVTVIVSKNGWV--------RARQGHGIDAAAVTYKAGDFAFALVETRSTWPLVV 596

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             + G  Y  +V  LP G     G  +  ++    G ++  ++    + +        FA
Sbjct: 597 LDTHGRAYTIRVAELPGGRGD--GVPIATLVDFQNGAKLAQVVSAEPESAWM------FA 648

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
              G      L +     R+GK  M ++  +++L+      E  I   ++ G+ + FP S
Sbjct: 649 NSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPARVLGER-IAAVSENGRLLVFPRS 707

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
            ++V AG    GV  ++L +G+ ++++A     
Sbjct: 708 EMKVQAG--GRGVIVMALDEGESMVAVAAPADE 738


>gi|294155860|ref|YP_003560244.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
 gi|291599928|gb|ADE19424.1| DNA topoisomerase IV, A subunit [Mycoplasma crocodyli MP145]
          Length = 912

 Score =  562 bits (1447), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/820 (29%), Positives = 406/820 (49%), Gaps = 42/820 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             EE  + I + S+   M   +  Y+  +I  RA+PD+RDGLKPVHRRIL+ M ++G+  
Sbjct: 4   EKEEIVERIINNSLDKIMAERFGRYSKYIIQQRALPDVRDGLKPVHRRILYAMSELGLTN 63

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K AR+ G+V+GKYHPHG+ ++YDA+  M+Q W   + L++  GN GS+D DP AA
Sbjct: 64  DKPYKKSARVVGDVIGKYHPHGDTSVYDAMVNMSQWWKSGIPLLDMHGNVGSLDNDPAAA 123

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K  +++L+DL K+TV F PN+D S +EP VL   +PN+LVNG  GIA+GMA
Sbjct: 124 MRYTEVRMAKVCNYMLEDLKKNTVAFIPNFDDSEKEPSVLPTIFPNLLVNGTTGIAIGMA 183

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG--- 244
           T +P HNL EV++  +A +  P I LD LME I+GPDFPTG +I G  G+  A+ +G   
Sbjct: 184 TEMPPHNLNEVLEATIAKLRRPSITLDGLMEHIKGPDFPTGGIIYGNKGVFEAFESGKLE 243

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +  I +     + K     + I +TEIP+ V K+ ++  I  L+  + I  + +++D+SD
Sbjct: 244 KEKIKLFCKYEVVK-KDKLQFIEITEIPFGVVKSQLVYDIDVLINTETIDGLLEIKDQSD 302

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G ++VI L   A+ + I++ L + TS+Q  +S N V ++   P+   L  +L+A++  
Sbjct: 303 REGIKIVITLSEEANVESIISFLLQKTSMQVNYSYNNVVIHNNSPKLMGLNELLEAYIEH 362

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + +  R   Y L K   R  +++G        D+V+++IR +   + A  E +      
Sbjct: 363 IKIIKTRTLTYDLEKYLLRLEIVLGFIKVSEIPDKVIKVIRATEGGKAAVIENL------ 416

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +  Q  AI ELRL RL+   ++    E   L  +I
Sbjct: 417 -------------------MNAFNFTTNQATAIAELRLYRLSKTDKEAFLIEQADLEKKI 457

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTV 542
               ++L    + +  +   L  +  ++ TPRRT+I   E   + + +D +  E + +  
Sbjct: 458 ANTKELLDDEKKFVNYLILLLKQMIKDMPTPRRTQIFEEEFTFNHDKKDLVKEEIVNIAF 517

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S LGY+KR+       +       S   ++++D++  +   +T  + L F++ G      
Sbjct: 518 SKLGYIKRLS-----QKVVDSNDFSTFALKEDDYLLYIDKANTVHNFLVFTNWGNYAIIP 572

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V+++     +  G  L   + L  GE    I+   E E   +  ++V ATK G  +R K+
Sbjct: 573 VYKIQETKWKELGTHLSAFVDLAPGE---NIINVIEVEDWNSPDFIVMATKLGFFKRTKI 629

Query: 663 SDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            DF     +    A+ +D++DE+++V       DIL+ T +G   ++  + I    G  +
Sbjct: 630 KDFEVSRTNKTYTAINIDNKDEVINVAVSDGTKDILIITAMGFATKYNEAEI-SLYGPKA 688

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G +G+ L   D V +     H +               + R I    +     +   + 
Sbjct: 689 KGTKGVYLVNKDFV-ACFTPTHFNDIVIMISDDGYIKKMKSREIYYVPKTAKGKEIFKNR 747

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
           + N            ++ IL   E       S+ D+ I+N
Sbjct: 748 KLNPYFISDMHSSENDEKILIKLEDNKIAVRSTKDYSITN 787



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 10/164 (6%)

Query: 729 LAKGDQVISMA---IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           L + D ++ +     V +     +     +  +   +     +     S   D +   NI
Sbjct: 541 LKEDDYLLYIDKANTVHNFLVFTNWGNYAIIPVYKIQETKWKELGTHLSAFVDLAPGENI 600

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E      FI+  ++ GF KRT   DF + +R+ K   A ++   +    ++ V 
Sbjct: 601 INVIEVEDWNSPDFIVMATKLGFFKRTKIKDFEV-SRTNKTYTAINI---DNKDEVINVA 656

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS---RATKGVVIFSTA 886
             +    I++++  G   +    EI +     + TKGV + +  
Sbjct: 657 VSDGTKDILIITAMGFATKYNEAEISLYGPKAKGTKGVYLVNKD 700



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 90/244 (36%), Gaps = 21/244 (8%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +  +K G ++R         + S      L   D +L ++     ++ L+ T  G     
Sbjct: 515 IAFSKLGYIKRLSQKVVDSNDFSTF---ALKEDDYLLYIDKANTVHNFLVFTNWGNYAII 571

Query: 709 PISAIRVFAGR--NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           P+  I+    +   +     + LA G+ +I   ++   D +  + I     +   +R   
Sbjct: 572 PVYKIQETKWKELGTHLSAFVDLAPGENII--NVIEVEDWNSPDFIVMATKLGFFKRTKI 629

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYD-----FRIS 820
            D E   + K  +++  +  +E          + IL ++  GF   T   +     +   
Sbjct: 630 KDFEVSRTNKTYTAINIDNKDEVINVAVSDGTKDILIITAMGFA--TKYNEAEISLYGPK 687

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
            +  KG+   +         +    P + ND +I++SD G + ++   EI    +  KG 
Sbjct: 688 AKGTKGVYLVN------KDFVACFTPTHFNDIVIMISDDGYIKKMKSREIYYVPKTAKGK 741

Query: 881 VIFS 884
            IF 
Sbjct: 742 EIFK 745


>gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
 gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255]
          Length = 748

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 248/743 (33%), Positives = 382/743 (51%), Gaps = 60/743 (8%)

Query: 1   MTEHIISSDEEEEKG-ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M   I  ++E++  G   S  +   + + YLTYA++ I+ RA+PD RDGLKPVHRRIL+ 
Sbjct: 1   MANLINKNNEDDGGGSTLSEPLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  N K++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+S+R  +++GQGNFG+
Sbjct: 61  MYRLKLVSNGKFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD PAA RYTE R+   A  +L  + ++ VDF+ NYDG   EP VL A +PN+L NG 
Sbjct: 121 IDGDNPAAARYTEARMTAVAEAMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMATNIP HN+GE++D  + +I  P+   + L++ + GPDFPTG + +  R  + 
Sbjct: 181 TGIAVGMATNIPPHNIGELLDASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSLL 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG + +R    IE       QIVVTEIPYQV K+ ++EKIAEL++ K++  +AD
Sbjct: 241 ETYRTGRGPMRLRSKWEIEDLPRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILAD 300

Query: 299 LRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVN-MVALNGYKPERFTLIG 356
           +RDES     R+V+E + +     V++  L+R + L+  F++N    ++G  P+  ++  
Sbjct: 301 VRDESAE-DIRLVLEPRAKTVDPTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKE 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +L+AF+  + +V++RR+K+ ++K   R  VL G  +A  NLD V+ IIR    P+     
Sbjct: 360 VLRAFIDHKRDVLLRRSKHRMDKIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEPKK---- 415

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+VQ  AIL +RL  L  L   ++R E
Sbjct: 416 -------------------------IMMKEFSLSDVQVEAILNMRLRSLRKLEEIELRTE 450

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME--D 529
           L+SL +E  +  D+L+S       I  EL   +           RRT + E     E   
Sbjct: 451 LDSLQLERADLDDLLASEKMQWERIINELRETRKVFGKNSDSGNRRTELAEAPDFEEVPI 510

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           E  I +E + V  S +G++        RA +        +  +D D    +F   T   +
Sbjct: 511 EAMIEKEPITVVCSSMGWL--------RAMKGHVDLSQELKYKDGDEKRFVFHAETTDKL 562

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F   G  Y      LP G        LI  L  +            +      +  ++
Sbjct: 563 LMFGGNGRFYTMSCSELPGGRGMGEPIRLIVDLPNDA--------NMVDLFIHQPDRKLL 614

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A+  G+    + +D +   R+GK A+ +      L  +     + +    +  + + FP
Sbjct: 615 LASSAGDGFVVEENDIVAQTRTGKQALNVKGDITALICKPVVG-DYVATVGQNRKVLIFP 673

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           I  + V +     GVR      G
Sbjct: 674 IDELPVMS--RGKGVRMQKYKDG 694


>gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
 gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170]
          Length = 743

 Score =  561 bits (1446), Expect = e-157,   Method: Composition-based stats.
 Identities = 243/742 (32%), Positives = 375/742 (50%), Gaps = 63/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +    E    I    +++ +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSKGPVPEPLE----IRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCAR+ G+V+GKYHPHG+AA+Y+A+ R+AQ++++R  L+EGQGNFG++
Sbjct: 57  RMLKLDPGSGFKKCARVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNI 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  L++ L  D VDFRP YDG   EPVV+ A +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARLTAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMATNIP HN+GE+ +  + +I  P    +AL+  ++GPDFPTG V+      I  
Sbjct: 177 GIAVGMATNIPPHNVGELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG++ +R     E  S    QIV+TEIPYQ+ KA ++E+IAEL+  +++  +AD+
Sbjct: 237 AYRTGRGAMRLRARWEKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADV 296

Query: 300 RDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E +     A+ ++ QL+R T L+  F++NM  L+G   P+   L   
Sbjct: 297 RDESA-DDLRLVLEPRNRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEA 355

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L AF+  R  V+ RR+++ L K   R  VL G  IA  NLDEV+RIIR    P+ A    
Sbjct: 356 LVAFLDHRLVVLGRRSRHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPA---- 411

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          LS+VQT AIL +RL  L  L   +IR E 
Sbjct: 412 -------------------------LMAAFGLSDVQTEAILNMRLRSLRRLEEMEIRREH 446

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME--DE 530
           ++L  E      +L+       +I +++   +           RRT +      +    E
Sbjct: 447 DALSAEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRRTELGSAPTAVIVPIE 506

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +   +       ++ D +       T   +L
Sbjct: 507 ALVEREPITVLLSERGWL--------RAVKGHQEPGEENKFKEGDALLLALHAQTTDKLL 558

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  +     +L  G     G+ +  +L L     I +++             ++ 
Sbjct: 559 ILDSTGRFFTLPADKLARGRGF--GEPVRLMLDLPNDADIVSLL------VHDPARRLIL 610

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G     +  D +   R+GK  M +D+ +  L        + + +  +  + + FP+
Sbjct: 611 AASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREVRG-DHVAVIGQNRKLLVFPL 669

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           + + V A     GV       G
Sbjct: 670 TQVPVLA--RGKGVILQRYKDG 689


>gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM
           2831]
 gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM
           2831]
          Length = 748

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/737 (33%), Positives = 370/737 (50%), Gaps = 60/737 (8%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +     GI SV +   ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM  + ++
Sbjct: 4   PFEPPSGDGIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLD 63

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
               + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++DGD PA
Sbjct: 64  PTTAHKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPA 123

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + A  LLD + +DTVDFRP+Y+G  +EPVVL A +PN+L NG  GIAVGM
Sbjct: 124 AYRYTEARLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGM 183

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGR 245
           AT+IP HN  E+ D  + +I++P+     L + ++GPDFPTG +++     +  AY TGR
Sbjct: 184 ATSIPPHNAAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGR 243

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G+  +R     E        IVVTEIPY + K  ++EK+AEL++EK++  +AD+RDES  
Sbjct: 244 GAFRVRARWAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDESAE 303

Query: 306 QGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVA 363
              R+V+E + R     +++  L+R T L++   +N+  L G   P+   L   L+ +V 
Sbjct: 304 -DVRIVLEPRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVD 362

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            R  V+ RR++Y L +   R  +L GL I   +LDEV+RIIR    P+ A          
Sbjct: 363 HRRVVLQRRSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAA---------- 412

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q  AIL+ RL  L  L   +++ E ++L  E
Sbjct: 413 -------------------LMARFELTEIQANAILDTRLRSLRKLEEMELKREFDALTAE 453

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLL---DMEDEDCIVR 535
             E   +L+S       I+ ++ +VK           RRT +               + R
Sbjct: 454 KAEIDALLASEPAQWKAIQAQIRAVKKTFGPETKLGRRRTTLASPPDVGGIDFTAALVER 513

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V VS  G++        RA +      SGV  + +D +   F   T   +L  ++ 
Sbjct: 514 EPITVIVSTKGWI--------RALKGHVADLSGVAFKGDDTLKIAFPTETTQKILLLATN 565

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V+  +  +LP G     G  +  +  L+ G  I   +P            ++ A   G
Sbjct: 566 GKVFTLEASKLPGGRGF--GDPVRLMADLDDGTEIVAALP------YRPETKLLIAGSDG 617

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
                     +   R GK  + L   D   +V      + + +       + FP+S +  
Sbjct: 618 RGFVAPADALVANTRKGKNVLGL-DGDATAAVLVPADGDHVAVVNTEKLLLIFPVSEVAE 676

Query: 716 FAGRNSVGVRGISLAKG 732
            A     GVR      G
Sbjct: 677 LA--RGKGVRLQRCRSG 691


>gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54]
          Length = 773

 Score =  561 bits (1445), Expect = e-157,   Method: Composition-based stats.
 Identities = 261/761 (34%), Positives = 370/761 (48%), Gaps = 73/761 (9%)

Query: 1   MTEHIIS---SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MT+           +E G  ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL
Sbjct: 1   MTDSNQQGLFDAAPDEGGDAAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNF
Sbjct: 61  FAMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS DGD  AA RYTE RL   A  LLD+L + TVDF PNYDGS QEP +L AR P +L+N
Sbjct: 121 GSRDGDNAAAMRYTEARLTPIAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TG 236
           G  GIAVGMAT IP HNL EV   CVA+I  P +    L  +I GPDF  G  I+     
Sbjct: 181 GASGIAVGMATEIPPHNLREVAQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAAD 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I   YA GRGS+ +R     E+ +  + Q+VVTE+P   +   +LE+I E+   K     
Sbjct: 241 IAQIYAGGRGSLKVRARWQFEEMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGK 300

Query: 297 ADLRDE-------------------SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
             L  E                         R+V E K      D  +N L   TS++S 
Sbjct: 301 KSLTPEQTQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESS 360

Query: 337 FSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            SVN+V +    +P +  L  IL  ++AFR   V+RRT++ L+K  DR HVL G  +   
Sbjct: 361 ASVNLVCIGTDGRPRQKGLRDILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYL 420

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV++ IR S  P   R  LM+R                            LS+ Q  
Sbjct: 421 NVDEVIQTIRESDEP---RAALMER--------------------------FNLSDRQAE 451

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            ILE+RL +L  L    I  EL     E     ++L + + L  ++ +E+ +   +    
Sbjct: 452 DILEVRLRQLARLEGFKIEQELEDKRKEQVALQELLDNPNTLKRLLIKEIEADAKQYGDD 511

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RRT I         E  ++ E + V VS  G++        RA++  G   S    +  D
Sbjct: 512 RRTLIE-TAERAVLETKVLDEPVTVIVSQKGWL--------RARQGHGHDASQFGFKQGD 562

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            +   F   T  +++     G VY   V  LP       G+ +  ++ L  G RI   + 
Sbjct: 563 DLYGAFECRTTDTLIAMGDNGRVYSVPVAGLPSARGD--GQPVTTMIDLESGTRIVHTIA 620

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEN 694
              D         + AT+ G     KLSD     R+GK  + L++ DE+L  V       
Sbjct: 621 AAADSRW------LLATRGGYGFAAKLSDMTSRQRAGKQFITLEAGDELLRPVPLFEGAT 674

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
            + L ++ G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 QLALLSQKGKFLVFGLDEVKSLSG-GGRGTILMGLDGADKL 714


>gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
 gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72]
          Length = 801

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 242/795 (30%), Positives = 395/795 (49%), Gaps = 71/795 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+  RA+P + DG+KPV RRIL+ M +M +    K+VK AR+ 
Sbjct: 54  LPLDLYAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARVV 113

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++++YDA+ R+AQD+SLR  L++GQGNFGS DGD  AA RYTECRL   
Sbjct: 114 GDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPI 173

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDG+F+EP +L AR P VL+NG  GIAVGMAT IP HNL EV
Sbjct: 174 AELLLSEIDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREV 233

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +    +I +P+  LD ++ ++ GPDFP G   I     I++AYA GRGS+ +R    IE
Sbjct: 234 AEATCHLIRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRIE 293

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE--------------- 302
           + +  + +++V E+P+ V+ A +L +I  L   +      ++  E               
Sbjct: 294 ELARGQWRVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDTV 353

Query: 303 ----SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIG 356
               SD+   R+V+E K    + D  +  L  +TSL++  SVNM  +    +P++  L+ 
Sbjct: 354 RDESSDKAPVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLVQ 413

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ FR   V RRT++ L++   R H+L G  IA  ++++V+R+IR S  P+ A   
Sbjct: 414 ILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPA--- 470

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+VQ   ILE+RL +L  L    I  E
Sbjct: 471 --------------------------LIAAFGLSDVQAEDILEIRLRQLARLEGFKIEKE 504

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           LN L  E +    +L +RS +  +I +E+     +    RRT I         E  +  E
Sbjct: 505 LNELKEEREGLQHVLDNRSAMTRLILKEIGEDTKKYGDDRRTLIETVAPIASAEISVADE 564

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S  G++        R+++  G   + +  +  DF   L    T   ++   + G
Sbjct: 565 PVTVILSKNGWI--------RSRQGHGLDAAAISYKAGDFAFALLETRTTWPLIVIDTHG 616

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y  KV  LP G     G  +  ++    G +   ++      +       +FA   G 
Sbjct: 617 RAYTVKVSDLPGGRGD--GVPIATLVEFQDGGKPAQVVSDDPATTW------LFANSGGY 668

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                ++D     R+GK  M L+  +++L+      E  I   ++ G+ + FP + ++  
Sbjct: 669 GFLCSVADATSRQRAGKAFMALEKGEKVLAPAKVFGE-WIAAGSENGRILVFPRAEMKTQ 727

Query: 717 AGRNSVGVRGISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           +G    GV  ++L +G+ + ++A+    A    +      K  + + +    +       
Sbjct: 728 SG--GRGVIVMALDEGEALSAVAVPADDAVLTIEGAGRGGKSTTVELKPAQREGLRHRRA 785

Query: 776 KNDSSVEGNISEERC 790
           +  + +   +  ER 
Sbjct: 786 RKGAPLTPKVKPERM 800



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 66/224 (29%), Gaps = 33/224 (14%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DE ++V          + ++ G              G ++     IS   GD   + A++
Sbjct: 563 DEPVTVILSKNG---WIRSRQGH-------------GLDAA---AISYKAGDF--AFALL 601

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                     I         +                     +  +             L
Sbjct: 602 ETRTTWPLIVIDTHGRAYTVKVSDLPGGRGDGVPIATLVEFQDGGKPAQVVSDDPATTWL 661

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             +  G+G   S  D     R+GK   A       +   ++A   V   + I   S+ G 
Sbjct: 662 FANSGGYGFLCSVADATSRQRAGKAFMAL-----EKGEKVLAPAKVF-GEWIAAGSENGR 715

Query: 862 LIRVPVNEIRIA--SRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++  P  E++     R   GV++ +  + E + +V  +   + V
Sbjct: 716 ILVFPRAEMKTQSGGR---GVIVMALDEGEALSAVA-VPADDAV 755


>gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
 gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37]
          Length = 809

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 268/775 (34%), Positives = 405/775 (52%), Gaps = 65/775 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  +        +  +   +   YLTYA++ I+ RA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MSDDDLDPNMNARN--LAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +     ++K A+ISG+ MG +HPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++
Sbjct: 59  RRLRLSSTGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   +  LL+ L +++VDFRPNYDG  +EP VL A YPN+L NG  
Sbjct: 119 DGDNPAASRYTEARMTVMSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN+GE+++ C+ +I +P+   D LM+ + GPDFPTG VI+     I  
Sbjct: 179 GIAVGMATNIPPHNIGELINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIAT 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGSI +R   H+E     + Q VVTEIPYQV K+ ++E+IAEL++ K+I  +AD+
Sbjct: 239 AYRTGRGSIRLRARWHVEDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADV 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGI 357
           RDES     R+V+E K +    D+++N L+R + L+  FS+NM   ++G  P+  +L   
Sbjct: 299 RDESA-DDIRMVLEPKTKNVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKEC 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA---- 413
           L+AF+ FR +V++RR+K+ + K  +R  VL GL IA  NLD V+ IIR+  +P+ A    
Sbjct: 358 LRAFLDFRRDVLIRRSKHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYE 417

Query: 414 -----RRELMQRSWNASDIK--------DLIDLIDDSSYTIG----------------SD 444
                 +  + R+ +  D +          ++L DD                        
Sbjct: 418 DWSRPHQSTIPRATDERDYRSPLTGVDVKALELRDDPDAVERGVLADDGTSSAVPRRFVG 477

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
            +  LS+VQ  AIL +RL  L  L   ++ NE + L  E     D+L+S     G IK+E
Sbjct: 478 RSEGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEE 537

Query: 505 LLSVKDELDT-----PRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           L  VK           R T   E     +   E  I RE + V  S +G++        R
Sbjct: 538 LNEVKKTFTKGYKRGQRLTTFAEATEAEDVPLEAMIEREPVTVVCSKMGWI--------R 589

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           A          +  +D D    +F   T   +L F S G  Y      LP G  +  G+ 
Sbjct: 590 AMTGHIALDRELKFKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGG--RGMGEP 647

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           L  ++ L     I  I+             ++ A+  G+       + I   R+GK  + 
Sbjct: 648 LRLMVDLPNDTEIVDIL------VHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLN 701

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +    + +  +  +    + +  +  + + F +  +    GR   GVR      G
Sbjct: 702 VKDPVKAMICKPVSGNA-VAVVGENRKVLIFMLDELPEM-GRG-KGVRLQKYKDG 753



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 69/238 (28%), Gaps = 27/238 (11%)

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             V++     + +  R    A   ++ D  L      +   ++  +K+G         IR
Sbjct: 539 NEVKKTFTKGYKRGQRLTTFAEATEAEDVPLEAMIEREPVTVVC-SKMGW--------IR 589

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G  ++  R +    GD       + HA+      +             +        
Sbjct: 590 AMTGHIAL-DRELKFKDGD---GPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGGRGMG 645

Query: 775 LKNDSSVEGNISEERCQELK-LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 V+     E    L     Q +L  S  G G      +     R+GK +      
Sbjct: 646 EPLRLMVDLPNDTEIVDILVHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNVKDP 705

Query: 834 KINEIGALV---AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
               I   V   AV  V +N ++++           ++E+    R  KGV +      
Sbjct: 706 VKAMICKPVSGNAVAVVGENRKVLI---------FMLDELPEMGR-GKGVRLQKYKDG 753


>gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424]
 gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424]
          Length = 780

 Score =  560 bits (1444), Expect = e-157,   Method: Composition-based stats.
 Identities = 256/816 (31%), Positives = 381/816 (46%), Gaps = 78/816 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +     +E  +     +++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +
Sbjct: 5   DITFQPEEPADS----LTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   +  LLD++ + TVDF PNYDGS QEP +L AR P VL+NG  GI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGASGI 180

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
           AVGMAT IP HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+     I   Y
Sbjct: 181 AVGMATEIPPHNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQIY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA---- 297
             GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K          
Sbjct: 241 ENGRGSLKVRARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTP 300

Query: 298 --------------DLRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM 341
                          +RDES +    R+V E K +       +  L  +TSL+S   +N+
Sbjct: 301 DQQQLKATVLAVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPINL 360

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  L  IL  ++AFR + V RRT++ L K  DR H+L G  + + N+DEV
Sbjct: 361 VMIGTDGRPRQKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEV 420

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A                                   LS+ Q   ILE+
Sbjct: 421 IRIIRESDEPKPA-----------------------------LVEAFGLSDRQAEDILEI 451

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPR 516
           RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +       PR
Sbjct: 452 RLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRRRIIKEIETDAKQYSPEDKDPR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I E       E  ++ E + V +S  G+V        R ++  G        +  D 
Sbjct: 512 RTLIQEERRA-AAEVRVIDEPVTVVMSQKGWV--------RTRQGHGHDPQQFTFKAGDA 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           + + F   T   +L F + G VY   V  LP G     G  +  ++ L  G ++      
Sbjct: 563 LYNTFDCRTVDVLLVFGTNGRVYSVPVSSLPGGRGD--GVPITTLIELQSGSQVAHTFA- 619

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
                   +  V+ AT +GN  +  + D     + GK  + LD  D  L       +   
Sbjct: 620 -----GNASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDGDAPLAPAPIGEEATH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
               +  G+ +   +  ++V +     GV  + L   ++++    V              
Sbjct: 675 AACLSGNGRLLLVALEEVKVLSA-GGRGVILMELEPKEKLLQAVAVGAPGLVLSGAGRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           K  S +    S         +    +E  + E R  
Sbjct: 734 KPSSQKLAGQSLLPYVGKRARKGKQLEAKLKEPRID 769



 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR--SGKGIRATDVSKINEIGALVA 843
           S+          Q +L  +  G G +T+  D  ++ R   GK     D    +    L  
Sbjct: 612 SQVAHTFAGNASQRVLIATANGNGFQTTVGD--MTGRQKGGKSFLTLD----DGDAPLAP 665

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                +      +S  G L+ V + E+++ S   +GV++      E++
Sbjct: 666 APIGEEATHAACLSGNGRLLLVALEEVKVLSAGGRGVILMELEPKEKL 713


>gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
 gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM
           14365]
          Length = 787

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 263/747 (35%), Positives = 393/747 (52%), Gaps = 52/747 (6%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM- 61
           +    +D+    G    S+  E +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M  
Sbjct: 15  DAPSGTDDYMGGGELDASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQA 74

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
              +    K+ K A++ G V+G+YHPHG+ A+YDA+ RMAQ +SLRL L++G GNFGS+D
Sbjct: 75  DEKLSHEAKHKKSAKVVGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLD 134

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD PAA RYTE RL  AA  LLD+L   TV FR NYD + +EP VL AR+PN+LVNG  G
Sbjct: 135 GDSPAAYRYTEARLTAAAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTG 194

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNA 240
           IAVGMATNIP HNL E+    +A+ D+P++++  L++ I+GPDFPTG  IL     ++  
Sbjct: 195 IAVGMATNIPPHNLRELTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREI 254

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  GRG+I +RG   +E      + +VVT +PY V KA ++E+IAE++ ++++  + D+R
Sbjct: 255 YEEGRGAIRVRGEYKLETQKR-SKILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVR 313

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-----YKPERFTLI 355
           DES     RVV+E+K+ A  ++I+  L+++T LQ  F+VN+  L        +P +  L 
Sbjct: 314 DESTT-DVRVVLEIKKDADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLK 372

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ F+ FR EV  RR ++ L     R H+L G  +    LDE +RIIR S   + A +
Sbjct: 373 DMLRHFLDFRYEVTERRYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQ 432

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           ++M++                            L + Q  AILELRL RL  L  + IR 
Sbjct: 433 KIMKK--------------------------FGLDKEQVDAILELRLYRLAKLEINIIRE 466

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCI 533
           EL     + K    IL S  +L G++K EL  V + L   RRT+       L+ + +  I
Sbjct: 467 ELADKRSQAKSIEAILRSEKKLWGVVKTELGEVAELLGDARRTKTGGAAAELEFDADAYI 526

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           + ED  V ++  G++KR          R  K  +   +R+ D V  +   ST   V FF+
Sbjct: 527 IDEDAHVVLTRDGWLKRQ---------RELKDPTSTRLREGDEVMAVLAGSTKEHVAFFT 577

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  Y  K++ +P       G  +  +     GERI   M F       +   ++  + 
Sbjct: 578 NYGSAYVIKIYDVPAT--SGYGDPVQKLFKFKDGERIVAAMAFDPRAMPPDE--LLTVSS 633

Query: 654 HGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            G  +R     F Q      +   +    DEI+ V    +++ +++ T+ G  +      
Sbjct: 634 GGFGQRFASEPFTQPTTRAGRKFARPPKGDEIVDVVATEEDDIVVVATRKGYTLACRSGE 693

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMA 739
           I         GV  I   + D+VI   
Sbjct: 694 INKLEN-PGKGVTVIKTGEHDKVIGFI 719



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 24/278 (8%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           INI+     ++ +          S   L+ V  T+ G V         +  ++G  A +L
Sbjct: 461 INIIREELADKRSQAKSIEAILRSEKKLWGVVKTELGEVAELLGD--ARRTKTGGAAAEL 518

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           +            ++  + + T+ G   R      R      S       L +GD+V+++
Sbjct: 519 EFD---ADAYIIDEDAHV-VLTRDGWLKR-----QRELKDPTST-----RLREGDEVMAV 564

Query: 739 AIVLHAD--ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                 +  A +                 SG  + +  L      E  ++        + 
Sbjct: 565 LAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFKFKDGERIVAAMAFDPRAMP 624

Query: 797 EQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
              +LTVS  GFG+R +S  F   + R+G+       ++  +   +V V    ++D +++
Sbjct: 625 PDELLTVSSGGFGQRFASEPFTQPTTRAGR-----KFARPPKGDEIVDVVATEEDDIVVV 679

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            + KG  +     EI       KGV +  T + ++V+ 
Sbjct: 680 ATRKGYTLACRSGEINKLENPGKGVTVIKTGEHDKVIG 717



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 59/245 (24%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           + F  D    +    V  T+ G ++R       Q       + +L   DE+++V   + +
Sbjct: 518 LEFDADAYIIDEDAHVVLTRDGWLKR-------QRELKDPTSTRLREGDEVMAVLAGSTK 570

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   T  G      I  +   +G      +      G+++++           DE + 
Sbjct: 571 EHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFKFKDGERIVAAMAFDPRAMPPDELLT 630

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF----- 808
                  QR      T+  T      +      E        ++  ++  + KG+     
Sbjct: 631 VSSGGFGQRFASEPFTQPTTRAGRKFARPPKGDEIVDVVATEEDDIVVVATRKGYTLACR 690

Query: 809 ----------GK--------------------RTSSYDF-----------------RISN 821
                     GK                    R +   +                 R++ 
Sbjct: 691 SGEINKLENPGKGVTVIKTGEHDKVIGFISGGRRAEALYVESAKGGRTFELHAVAQRLTT 750

Query: 822 RSGKG 826
           R GKG
Sbjct: 751 RGGKG 755


>gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis]
 gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis]
          Length = 485

 Score =  560 bits (1443), Expect = e-157,   Method: Composition-based stats.
 Identities = 231/509 (45%), Positives = 332/509 (65%), Gaps = 27/509 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 QRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           +L+    +  II++EL  +     TPRRT
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRT 485


>gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis]
          Length = 492

 Score =  560 bits (1442), Expect = e-157,   Method: Composition-based stats.
 Identities = 232/516 (44%), Positives = 334/516 (64%), Gaps = 27/516 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
           +L+    +  II++EL  +     TPRRT+I     
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTKIEMDAG 492


>gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
 gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234]
          Length = 753

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 240/743 (32%), Positives = 372/743 (50%), Gaps = 66/743 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
                +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M +MG+  
Sbjct: 2   PPSGGDDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++DGD  AA
Sbjct: 62  NSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ + A  LL+ + +D VDFRP Y+   +EP VL   +PN+L NG  GIAVGMA
Sbjct: 122 YRYTEAKMTEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGPDFPTGAVI-LGRTGIK 238
           T+IP HN  E+ D  + +I +P   L+ L+          I GPDFPTG +I   R  + 
Sbjct: 182 TSIPPHNAHELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASML 241

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +Y TGRG   +R    +E       QIVVTEIPYQV K+ ++EKIAEL+  +++  + D
Sbjct: 242 ESYRTGRGGFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLED 301

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           +RDES      V++   R   A++++  L++ T L+S   +NM  L+  + P    L  +
Sbjct: 302 IRDESAEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEV 361

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++A R EV+ RR+++ L     R  +L G  +A  N+DEV+RIIR    P+      
Sbjct: 362 LSEWLAHRREVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPKAM---- 417

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                       +I+                L++VQ  AIL +RL  L  L   +IR E 
Sbjct: 418 ------------MIER-------------FALTDVQAEAILNMRLRSLRKLEEFEIRTEF 452

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---ED 529
           ++L  E  E   +L+S  +    +  E+  VK +         RR+   +          
Sbjct: 453 DALSKEKAEIEALLASDDKQWQAVAWEIGEVKKKFAKATELGKRRSTFADAPDADIEAIQ 512

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           +  I +E + V +S  G++        RA +      S +  +D D +   F   T   +
Sbjct: 513 QAMIEKEPITVVISEKGWI--------RALKGHISDTSALQFKDGDALKVAFPAQTTDKI 564

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F++ G VY     +LP G  +  G+ L  ++ +   + + T +             ++
Sbjct: 565 LVFTTGGKVYTLGGDKLPGG--RGHGEPLRIMVDMENDQDVLTAL------VHDPARKLI 616

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            ++  GN      SD +   R GK  M +   DE   V      + + +     + + FP
Sbjct: 617 VSSAAGNGFVVTESDIVANTRKGKQVMNVVMPDEAKLVVPTKG-DHVAVVGDNRKMLVFP 675

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           ++ I   A     GVR      G
Sbjct: 676 LAQIPEMA--RGKGVRLQRYKDG 696


>gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis]
          Length = 494

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 233/517 (45%), Positives = 335/517 (64%), Gaps = 27/517 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           +L+    +  II++EL  +     TPRRT+I     D
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTKIEMDAGD 493


>gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis]
 gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis]
 gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis]
 gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis]
 gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis]
 gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis]
 gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis]
 gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis]
 gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis]
          Length = 493

 Score =  559 bits (1441), Expect = e-157,   Method: Composition-based stats.
 Identities = 233/517 (45%), Positives = 335/517 (64%), Gaps = 27/517 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               SE Q  AILELRL +LTGL  D ++ E + L  +I     
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRK 456

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
           +L+    +  II++EL  +     TPRRT+I     D
Sbjct: 457 VLAEEELVKDIIREELQELHKVHKTPRRTKIEMDAGD 493


>gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
 gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476]
          Length = 749

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 227/747 (30%), Positives = 364/747 (48%), Gaps = 60/747 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLPFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +PD   + L + + GPDFPTG +++     I+ 
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  S     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRIGRGFFRLRSRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           +DES      V++   R    ++++  L++ T  +  F +N+  L+  K     +L   L
Sbjct: 299 QDESAEDIRIVLVPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y L++   R  +L G  IA  NLDEV++IIR    P+       
Sbjct: 359 QQWLVHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKR------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 413 -----------------------KLINRFELTENQAEAILNMRLRSLRKLEEFEIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           +L  E ++  ++L+S  +   I+ +E+  V++          RRT         LD   +
Sbjct: 450 TLKAEKEKLQNLLASPIKQWKIVSEEIKKVRNTFGPETLLGKRRTTFEEAPRHDLDDIQQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTVVISEKGWM--------RALKGHLNDYKALSFKEGDSLKLAFPAFTTDKIV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G              +     +                 ++ 
Sbjct: 562 LISTGGKFFALGANSLPGGRGHGE--------PIRLLVDMDDEHDVLTAFVHHAEEKLLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  GN      ++ I   R GK  M + S D++         + + +  +  + + F I
Sbjct: 614 VSSQGNGFIVPAAEVIANTRKGKQVMNVKSPDKVKLCAPVHG-DHVAVVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             I         GVR     +G  V +
Sbjct: 673 EQIPEMN--RGKGVRLQRYKEGGIVDA 697



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 9/167 (5%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +S  +GD +           D    I       A                       +
Sbjct: 538 KALSFKEGDSLK--LAFPAFTTDKIVLISTGGKFFALGANSLPGGRGHGEPIRLLVDMDD 595

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +     +   E+ +L VS +G G    + +   + R GK +             +   
Sbjct: 596 EHDVLTAFVHHAEEKLLLVSSQGNGFIVPAAEVIANTRKGKQVMNVK-----SPDKVKLC 650

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            PV+  D + +V +   ++   + +I   +R  KGV +    +   V
Sbjct: 651 APVH-GDHVAVVGENRKMLIFSIEQIPEMNR-GKGVRLQRYKEGGIV 695


>gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
 gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506]
          Length = 750

 Score =  559 bits (1440), Expect = e-157,   Method: Composition-based stats.
 Identities = 245/743 (32%), Positives = 377/743 (50%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +          I  V + + ++  YL YA++ I+GRA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKPVDPPSG--GGEIQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++  + Y KCARI G+VMG++HPHG+AAIYDAL R+AQD+S+R  L++GQGNFG+V
Sbjct: 59  RVLRLDPGQAYKKCARIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL  + ++ VDFRP Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDSAAAMRYTEARMTEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN  E+ D  + +I+NPD  +D L+  I GPDFPTG VI+     I+ 
Sbjct: 179 GIAVGMATNIPPHNAAELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E  +  +  +VV EIPYQV K+ ++EKIAEL++ +++  +AD+
Sbjct: 239 AYETGRGSFRVRARWEREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADI 298

Query: 300 RDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+V+E K      ++++  L+R T L+S   +NM  L+G K P+  +L  +
Sbjct: 299 RDESAE-DIRIVLEPKSKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++A + EV+ RR ++ L +   R  +L G  I   N+D+V+RIIR    P+      
Sbjct: 358 LAEWLAHQREVLERRARHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEPKQ----- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          LS+VQ  A+L +RL  L  L   ++R E 
Sbjct: 413 ------------------------ELMRFFTLSDVQAEAVLNMRLRSLRKLEEFELRREF 448

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMEDE-- 530
           + L +E  E   +L S  +    + +E+ +V++          RRTR  +       +  
Sbjct: 449 DQLTVEKAEKEALLGSTEKQWSAVAEEVRAVRETFSKKTKLGKRRTRFADAPDHDIGDIT 508

Query: 531 -DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
              I +E + + +S  G++        R  +      S +  R+ D +   F   T   +
Sbjct: 509 TALIEKESVTIVLSKKGFL--------RGMKGHLADFSNLTFREGDGLNIAFHAMTTDKL 560

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           LF S  G V+  +  +LP G  + +G  +     L   + I        +         +
Sbjct: 561 LFVSKHGRVFTMQADKLPGG--RGQGDPIRLAFDLEDKDDIAAAFTAEPERRR------L 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  G        D I   R GK  M +     +   +   + + + +  +  + + FP
Sbjct: 613 MVSSEGTGFVATEGDMISGTRKGKQLMNVGKGSVVELAQEIGEGDTVAIVGENRKLLVFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +S +   A     GVR      G
Sbjct: 673 LSQVPQMA--RGKGVRLQRYKDG 693


>gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
 gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105]
          Length = 773

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 249/772 (32%), Positives = 370/772 (47%), Gaps = 74/772 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  + +         ++++    + +YL YAI+V+ GRA+P+  DG KPV RRIL+ M
Sbjct: 1   MEQLTLDATPPSGDDSETITLGLYAERAYLDYAISVVKGRALPECADGQKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N K VK AR+ G+V+GKYHPHG+ A YDAL RMAQ+++LR  LI+GQGNFGS 
Sbjct: 61  NEMGLGNNAKPVKSARVVGDVLGKYHPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSR 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LLD++   TVDF PNYDGSFQEP +L AR P VL+NG  
Sbjct: 121 DGDGAAAMRYTEARLTPIAKLLLDEVDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT+IP HN+ EV    + +I +P+ DLD +M  +  PDFP GA I+   + +K 
Sbjct: 181 GIAVGMATDIPPHNIREVAAATIHLIKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKE 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            YA GRGSI +R    IE+ +  + Q+VV E+P   + A +LE+I EL   K       L
Sbjct: 241 IYAGGRGSIKVRARWDIEEMARGQWQLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGL 300

Query: 300 RDE-------------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSV 339
             E                         R+V E K R  S +   N L  +TSL++  S+
Sbjct: 301 STEQQNLKAQVLAMLDAVRDESGKENAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSI 360

Query: 340 NMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V+++   +P +  LI +L  ++ FR+  V RR+++ L +  DR HVL G  IA  N+D
Sbjct: 361 NLVSIDNAGRPGQRGLIAMLLDWIEFRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNID 420

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S  P+ A                                   LS+ Q   IL
Sbjct: 421 EVIKVIRESDEPKPA-----------------------------LIEAFKLSDRQAEDIL 451

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L +  I  EL  L  E  +   +L+   +L   I  E+    D     RRT
Sbjct: 452 EIRLRQLARLEKIKIEQELAKLAEEKADLEALLADEGKLKTRIIGEIRKDTDTYGDDRRT 511

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I         E  +V E   V VS   ++        R ++  G   +    +  D + 
Sbjct: 512 LIE-EAEKASVEVKVVEEPTTVIVSQKFWI--------RNRQGHGHDAAQFGFKVGDALY 562

Query: 579 DLFIVSTHTSVLFF---SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             F   T  +   F   ++LG V+   V   P G         +  L+            
Sbjct: 563 AAFECKTTDNTYLFGAGNALGKVFSVPVAAWPGGRGDGIPAQSLVELNGGSLSHALAAPA 622

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
                 + +  Y   AT                 ++GK  + L+  +++LS       +D
Sbjct: 623 TQPVFLACSAAYGFLATAGN---------MESRMKAGKQFISLNPGEKLLSPALLQPTDD 673

Query: 696 -ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            + + ++ G+   F +  ++  +G    GV+ + L   D +++      AD+
Sbjct: 674 RVAVLSESGRFHVFMLDELKQLSG-GGRGVQLLPLDDKDTLVAAVAFGPADS 724


>gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra
 gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra
          Length = 500

 Score =  559 bits (1439), Expect = e-156,   Method: Composition-based stats.
 Identities = 243/490 (49%), Positives = 342/490 (69%), Gaps = 9/490 (1%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 2   RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH +L DL K+TVDF PNYDG
Sbjct: 62  MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +   P V+  R PN+LVNG  GIAVGMATNIP HNL EV++ C+A+IDN ++  + ++E 
Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS-GDREQIVVTEIPYQVNKA 278
           I GPDFPT  +I GR GI+ AY TGRG I IR  + I+      +E I+V E+PYQVNKA
Sbjct: 182 IPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNKA 241

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EK+AELV++KR+  I+ LRDESD+ G R+VIE+KRG   +V+LN LY+ T +Q  F 
Sbjct: 242 RLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFG 301

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           +NMVAL   +P+ F +  +L+AFV  R EVV RRT + L KARDRAH+L GL+IA+AN+D
Sbjct: 302 LNMVALTNGQPKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANID 361

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLS 450
            ++ +I+ S N + +  +L+ + W   ++ +++    + +             DG  YL+
Sbjct: 362 PIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYYLT 421

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
             Q +AI++L+L +L+G+  D I +E  +L   I E + IL++ +RL+ +I +EL++++D
Sbjct: 422 AEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRD 481

Query: 511 ELDTPRRTRI 520
           E    RRT I
Sbjct: 482 EFGDERRTEI 491


>gi|313609056|gb|EFR84776.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes FSL F2-208]
          Length = 586

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/610 (38%), Positives = 364/610 (59%), Gaps = 33/610 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +        SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 407 ----------LNLQTNYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYV
Sbjct: 457 LGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYV 516

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     Y A          + M++ D    +  +++  S+L F+S G      V  LP 
Sbjct: 517 KRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELPD 571

Query: 609 GSPQARGKAL 618
              +  G  +
Sbjct: 572 IRWKNLGDHV 581



 Score = 39.4 bits (90), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +  L     +  T+ + +   E    +   + L   E  I++V+++G+ KRTS   +  S
Sbjct: 468 KEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS 527

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           N +     A       E    + +  +N  D ++L + KG  I  PV+E+ 
Sbjct: 528 NGAEL---AMK-----EADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 570


>gi|304372932|ref|YP_003856141.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
 gi|304309123|gb|ADM21603.1| Topoisomerase IV subunit A [Mycoplasma hyorhinis HUB-1]
          Length = 881

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 231/795 (29%), Positives = 395/795 (49%), Gaps = 38/795 (4%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++ E+ +   S+   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M  +G++ +K
Sbjct: 2   KKNEEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWMLGLKNDK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN GS+D DP AA R
Sbjct: 62  AFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDDDPAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LVNG  GIA G AT+
Sbjct: 122 YTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGIASGFATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNL E++D C+  + N       + +II+GPDFPTG +I    GI  A+ TG+G +V
Sbjct: 182 IPPHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTKGIDEAFETGQGKVV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +     I       + I + EIP+ V K+ ++++I E+  EK+I  I D+ D+SDR G  
Sbjct: 242 LVSKYKIIN-EPKYKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQSDRTGIS 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IEL++ A+ ++ILN L + T +Q  +S N VA++ Y P+  ++  +L  ++   +E+ 
Sbjct: 301 ILIELEKEANIELILNYLLQKTQMQISYSYNSVAIHNYTPKLLSIYKMLDYYLDHLKEIK 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            +  ++ L K   R  ++ G        DEV++IIR S N +    E + +         
Sbjct: 361 TKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALVQ--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               + +Q  AI E+RL RL+ + + +  NE N+L  ++ +   
Sbjct: 412 ----------------NFDFTLLQATAIAEMRLYRLSRIDQQNYLNEKNTLIDQVAKLTT 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGY 547
           +L +       +   L  +K +    R+T+I      +++  E+ I  E+    ++  G 
Sbjct: 456 LLENDLEFNQYLVSILKEIKTKFGRERKTQIINQNFKIEINQEELIKNEESYFVITKQGL 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++   V+ +        S + ++++D+   +  + T   +L F+S+G      +  + 
Sbjct: 516 YKKMSNKVFESN-----DISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIFIPLHTIE 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             + +A    L     L + E I + +   +      N +V   TK+G  +R  L D   
Sbjct: 571 DATFKATWSDLQIDYLLKKDETIISAIEIADFS---ENQFVCLITKNGMGKRISLKDLEV 627

Query: 668 INRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 I AMK+   D+++  +      DI L T   +  R+    +    G N+ GVR 
Sbjct: 628 SRFKKTILAMKIKQDDQLIGAKLSDNYQDIALFTNQNRASRYSEIEV-PIYGTNTAGVRI 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           + L +G+ +    +    D              +   +  G+         +S       
Sbjct: 687 LKLKEGEYIDHFVLGQSDDVFVFVAKSGFVRNISLSSIYYGNKNSQAKFYLESKFTHLKI 746

Query: 787 EERCQELKLKEQFIL 801
               ++   +  FI 
Sbjct: 747 VNIIKQKNKEICFIF 761



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 59/263 (22%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
              +   ++E   N       TK G  ++     F     +    + L  +D  + V   
Sbjct: 490 NFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFES---NDISNISLKEKDYFVFVNKI 546

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS--LAKGDQVISMAIVLHADADY 748
             +N +L+ T +G  +  P+  I     + +     I   L K + +IS   +       
Sbjct: 547 QTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDYLLKKDETIISAIEIAD----- 601

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                          + QF+  +++ G 
Sbjct: 602 ---------------------------------------------FSENQFVCLITKNGM 616

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKR S  D  + +R  K I A  + +      L+     ++   I L +++    R    
Sbjct: 617 GKRISLKDLEV-SRFKKTILAMKIKQ---DDQLIGAKLSDNYQDIALFTNQNRASRYSEI 672

Query: 869 EIRIASRATKGVVIFSTAKDERV 891
           E+ I    T GV I    + E +
Sbjct: 673 EVPIYGTNTAGVRILKLKEGEYI 695


>gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1]
 gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 771

 Score =  558 bits (1438), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/809 (31%), Positives = 375/809 (46%), Gaps = 71/809 (8%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT+     D+        S++++   + +YL YAI+V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MTDQPTLFDQVPSAPDGESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +    K  K A + G+V+GK HPHG+ ++YDAL RMAQD+SLR  LI+G GNFGS
Sbjct: 61  MNELSLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++   TV+F+PNYDGS +EP +L AR P +L+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IK 238
            GIAVGMAT IP+HNL EV    VA+I NP I    LME+I GPDFP G  I+     I 
Sbjct: 181 SGIAVGMATEIPSHNLTEVAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +GRGS+ +R    IE  +  + Q V+TE+P  V+   +LE+I EL   K  +    
Sbjct: 241 EMYQSGRGSLKVRARWKIEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKS 300

Query: 299 ------------------LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFS 338
                             +RDES R    R+V E K +       +N L   TSL++  S
Sbjct: 301 LTPEQQAQKAAILGLLDAVRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSAS 360

Query: 339 VNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +++FR E V RRT++ + K  DR H+L G    + N+
Sbjct: 361 LNLVMIGGDGRPRQKNLTDILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V+RIIR S  P+ A                                   LS+ Q   I
Sbjct: 421 DKVIRIIRESDEPKPA-----------------------------LIEAFRLSDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I+ EL  L  E     D+L + S +  ++ +E+          RR
Sbjct: 452 LEIRLRQLARLEAIKIQQELAELRNEKSTLQDLLDNPSSMKKLVIKEIEGDAKTYGDARR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I         E  ++ E + V +S  G+V        RA+   G   +    +  D +
Sbjct: 512 TIIE-EAERATFEQKVIDEPVTVIISQKGWV--------RARTGHGHDATQFTFKAGDSL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  ++L F S G VY   V  LP       G  +  +L L  G  I      P
Sbjct: 563 YGAFECRTVDNLLAFGSNGRVYTIAVNALPNARGD--GVPVTTLLELASGSSILHYFAGP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDI 696
            D      L +      G + +     F ++   GK    LD     L      T  + +
Sbjct: 621 ADT----TLLLASDAAAGFIAK-ASDMFGRVKG-GKSFFTLDEGALPLAPTPVPTDASAV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +     GV  + L K +++++   +              K
Sbjct: 675 ACVSGNGRLLVFGLDEMKTLSS-GGRGVNLMELEKNEKLVAAQAISQKGVVVYGTGNVGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                   +S         +   ++E  I
Sbjct: 734 AKEIALSAVSLALHIGKRARKGKALESRI 762


>gi|330723479|gb|AEC45849.1| DNA topoisomerase IV subunit A [Mycoplasma hyorhinis MCLD]
          Length = 888

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 231/802 (28%), Positives = 399/802 (49%), Gaps = 38/802 (4%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + + ++ ++ E+ +   S+   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M  
Sbjct: 2   KKLDNNMKKNEEQLIVNSLDSIVSERFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWM 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++ +K + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN GS+D 
Sbjct: 62  LGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGNKGSIDD 121

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           DP AA RYTE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LVNG  GI
Sbjct: 122 DPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLVNGTKGI 181

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           A G AT+IP HNL E++D C+  + N       + +II+GPDFPTG +I    GI  A+ 
Sbjct: 182 ASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIKGPDFPTGGIIYDTKGIDEAFE 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TG+G +V+     I       + I + EIP+ V K+ ++++I E+  EK+I  I D+ D+
Sbjct: 242 TGQGKVVLVSKYKIIN-EPKYKAIEIEEIPFSVVKSELVKQIDEIRFEKKIEGILDVIDQ 300

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G  ++IEL++ A+ ++ILN L + T +Q  +S N VA++ Y P+  ++  +L  ++
Sbjct: 301 SDRTGISILIELEKEANIELILNYLLQKTQMQISYSYNSVAIHNYTPKLLSIYKMLDYYL 360

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              +E+  +  ++ L K   R  ++ G        DEV++IIR S N +    E + +  
Sbjct: 361 NHLKEIKTKEIEFDLKKNNQRLEIVKGFLKVADITDEVIKIIRNSDNSKQGVIEALVQ-- 418

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                      + +Q  AI E+RL RL+ + + +  NE N+L  
Sbjct: 419 -----------------------NFDFTLLQATAIAEMRLYRLSRIDQQNYLNEKNTLID 455

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVV 540
           ++ +   +L +       +   L  +K +    R+T+I      +++  E+ I  E+   
Sbjct: 456 QVAKLTTLLENDLEFNQYLVSILKEIKTKFGRERKTQIINQNFKIEINQEELIKNEESYF 515

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++  G  K++   V+ +        S + ++++D+   +  + T   +L F+S+G    
Sbjct: 516 VITKQGLYKKMSNKVFESN-----DISNISLKEKDYFVFVNKIQTKNKLLIFTSVGNYIF 570

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             +  +   + +A    L     L + E I + +   +      N +V   TK+G  +R 
Sbjct: 571 IPLHTIEDATFKATWSDLQIDYLLKKDETIISAIEIADFS---ENQFVCLITKNGMGKRI 627

Query: 661 KLSDFIQINRSGKI-AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            L D         I AMK+   D+++  +      DI L T   +  R+    +    G 
Sbjct: 628 SLKDLEVSRFKKTILAMKIKQDDQLIGAKLSDNYQDIALFTNQNRASRYSEIEV-PIYGT 686

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GVR + L +G+ +    +    D              +   +  G+         +S
Sbjct: 687 NTAGVRILKLKEGEYIDHFVLGQSDDVFVFVAKSGFVRNISLSSIYYGNKNSQAKFYLES 746

Query: 780 SVEGNISEERCQELKLKEQFIL 801
                      ++   +  FI 
Sbjct: 747 KFTHLKIVNIIKQKNKEICFIF 768



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 81/263 (30%), Gaps = 59/263 (22%)

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
              +   ++E   N       TK G  ++     F     +    + L  +D  + V   
Sbjct: 497 NFKIEINQEELIKNEESYFVITKQGLYKKMSNKVFES---NDISNISLKEKDYFVFVNKI 553

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS--LAKGDQVISMAIVLHADADY 748
             +N +L+ T +G  +  P+  I     + +     I   L K + +IS   +       
Sbjct: 554 QTKNKLLIFTSVGNYIFIPLHTIEDATFKATWSDLQIDYLLKKDETIISAIEIAD----- 608

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                          + QF+  +++ G 
Sbjct: 609 ---------------------------------------------FSENQFVCLITKNGM 623

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKR S  D  + +R  K I A  + +      L+     ++   I L +++    R    
Sbjct: 624 GKRISLKDLEV-SRFKKTILAMKIKQ---DDQLIGAKLSDNYQDIALFTNQNRASRYSEI 679

Query: 869 EIRIASRATKGVVIFSTAKDERV 891
           E+ I    T GV I    + E +
Sbjct: 680 EVPIYGTNTAGVRILKLKEGEYI 702


>gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
 gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07]
          Length = 781

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 259/764 (33%), Positives = 373/764 (48%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPAE--ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
            Y TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K        
Sbjct: 239 IYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 299 -----------------LRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSV 339
                            +RDES +    R+V E K +        N L  +TSL+S   +
Sbjct: 299 TPDQLQLKQTMLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPI 358

Query: 340 NMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++A+R E V RRT++ L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LSE Q   IL
Sbjct: 419 EVIRIIRESDEPKPA-----------------------------LMQAFGLSERQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKDLREEQADLDVLLKSETVMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E       E  +V E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRA-AAEVKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDVLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G     G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +             V+ +T+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LA------GHAEQNVLISTRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   +  G+ + FP+S ++  A     GV  + L K + + 
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLA 715


>gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4]
 gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4]
          Length = 758

 Score =  558 bits (1437), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/750 (32%), Positives = 371/750 (49%), Gaps = 67/750 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   +     +T + +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDG-GDNVTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ + +D VDFRP Y+    EPVVL   +PN+L NG  
Sbjct: 120 DGDSAAAYRYTEARMTDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI--------IRGPDFPTGAV-I 231
           GIAVGMAT+IP HN  E+ D  + +I N    ++ L           I GPDFPTG + I
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVI 239

Query: 232 LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
             R  +   Y TGRG   +R     E       QIV+T+IP+QV K+ ++EKIAEL+  K
Sbjct: 240 ESRESMLETYRTGRGGFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAK 299

Query: 292 RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PE 350
           R+  + D+RDES      V++   R     +++  L++ + L+S   +NM  L+  K P+
Sbjct: 300 RLPLLEDIRDESAEDVRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPK 359

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
              L  +L  ++  R++V+VRR+++ L     R  +L GL IA  NLDEV+RIIR     
Sbjct: 360 VMALNEVLLEWLDHRKDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIREE--- 416

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           + A+  L+ R                            L++ Q  AIL +RL  L  L  
Sbjct: 417 DEAKDALIAR--------------------------FELTDNQAEAILNMRLRNLRKLEE 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLL 525
            +IR E ++L  E  E   +L+S     G I  E+  VK +         RRT       
Sbjct: 451 FEIRKEHDALSKEKAEIETLLASDDLQWGTIASEIGEVKKKYAKATDIGRRRTLFANAPD 510

Query: 526 DM---EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                  +  I +E + V +S  G+++ +    Y         +  +  ++ D +   F 
Sbjct: 511 ADVDAIQQAMIEKEPITVVISEKGWIRALKGHSY--------DKVSLTFKEGDGLRVAFP 562

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             T   +L  ++ G VY     +LP G  +  G+ +  ++ +   + + T          
Sbjct: 563 AQTTDKILLVTTGGKVYTLGGDKLPGG--RGHGEPIRIMVDMENDQDVLTAF------VH 614

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                ++ A+  GN      SD     R GK  M +   DE   V   +  + + +  + 
Sbjct: 615 DPARKLLIASTGGNGFIVAESDITANTRKGKQVMNVGMPDETKLVVPISG-DHVAVVGEN 673

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            + V FP++ +   +     GVR      G
Sbjct: 674 RKMVVFPLAQVPEMS--RGKGVRLQRYKDG 701



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 80/240 (33%), Gaps = 20/240 (8%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            A++ G V++          R    A   D+  + +      +E   ++ ++ G      
Sbjct: 481 IASEIGEVKKKYAKATDIGRRRTLFANAPDADVDAIQQAMIEKEPITVVISEKGW----- 535

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              IR   G +   V  ++  +GD + ++                 +  +   +      
Sbjct: 536 ---IRALKGHSYDKV-SLTFKEGDGLRVAFPAQTTDKILLVTTGGKVYTLGGDKLPGGRG 591

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
             E   +  D   + ++      +   K   +L  S  G G   +  D   + R  KG +
Sbjct: 592 HGEPIRIMVDMENDQDVLTAFVHDPARK---LLIASTGGNGFIVAESDITANTR--KGKQ 646

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             +V   +E   +V +      D + +V +   ++  P+ ++   SR  KGV +      
Sbjct: 647 VMNVGMPDETKLVVPI----SGDHVAVVGENRKMVVFPLAQVPEMSR-GKGVRLQRYKDG 701


>gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I]
 gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I]
          Length = 771

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 366/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       D        ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I NP +  + L+ ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------ 291
              YATGRGS+  R     E+ +  + Q+VVTE+P   +   +LE+I E+   K      
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 292 ---------RIVDIADLRDESDRQGYRVVIEL-----KRGASADVILNQLYRYTSLQSLF 337
                    + V ++ L    D  G    + L           D  +N L   TS++S  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 338 SVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR +  P  A                                   L+E Q   
Sbjct: 421 VDEVIQTIREAEEPRAA-----------------------------LMARFGLTERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     D+L +   L  ++ +E+     +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I         E  +V E + V VS  G++        RA++  G        +  D 
Sbjct: 512 RTLIE-TAERAVLETKVVDEPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP       G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGD--GQPVTTMIDLEAGTRIVHTIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             D         + AT+ G     +LSD     R+GK  + L+  DE+L  V        
Sbjct: 621 APDSRW------LLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 LALLSAKGKFLVFDLDEVKSLSG-GGRGTILMGLDTADKL 713


>gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid
           E]
 gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii]
 gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22]
          Length = 738

 Score =  557 bits (1436), Expect = e-156,   Method: Composition-based stats.
 Identities = 244/745 (32%), Positives = 375/745 (50%), Gaps = 61/745 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +E  I ++   + +   YL YA++ I+ R++PD+RDGLKPVHRR+L+ M+Q+ +E N  Y
Sbjct: 2   KEAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+GKYHPHG+ A+YD L R+AQ +SLR  LI+GQGNFGS+DGD  AA RYT
Sbjct: 62  KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+ +    L++D+ KDTVDFR  YD S  EPV++ A +PN+L NG  GIAVGMATNIP
Sbjct: 122 ESRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HNL E+ D  + +IDNP   ++ +M  I+GPDFPTG +I+ +   I  AY TGRGS  +
Sbjct: 182 PHNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFRV 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E+ S    QIVVTEIPYQ+ K+ ++E+IA L+++K+I  I+ +RDES     RV
Sbjct: 242 RSRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDES-TDIIRV 300

Query: 311 VIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           VIE   R     +++  L++ T+L+S   +NM  +     P    ++ IL+ F+  R+ +
Sbjct: 301 VIEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNI 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RR+ YLLNK + R  +L  L I   NLDE++ IIR    P   +  +M+R        
Sbjct: 361 IIRRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEP---KTIIMER-------- 409

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               +S +Q   IL  RL  L  L    I +E ++L  +     
Sbjct: 410 ------------------FKISAIQVEVILNTRLRSLQKLEEHAIIDEHSNLQKQQAILE 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVE---GLLDMEDEDCIVREDMVV 540
            IL +   L  I+K+E+ +V+ +         RRT   E       ++    I +E + +
Sbjct: 452 KILKNHKELWQIVKKEIKAVQTKFGLNTIIGARRTSFEEVDLTNQVVDITAFITKEPITI 511

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             S +G+V        R+ +      S +  ++ D    +    T   +L  SS G  + 
Sbjct: 512 ICSKMGWV--------RSLKGHNTDLSTIKYKEGDTEKFIIEAYTTDKILIISSKGRFFT 563

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +  G            + L        I      +    N  ++ A+  G     
Sbjct: 564 LLADNISKGKGTGGVS-----IKLLVDIGNNDITNILVYK---PNQLLLLASSIGKGFLV 615

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             ++ I   ++GK  M +      ++       + I    +  + + F I  I       
Sbjct: 616 NSNEVIAQTKTGKQIMNIPEGYSCIACLPVNG-DSIACIGESRRLLVFNIDEIPEMK--K 672

Query: 721 SVGVRGISLAKGDQVISMAIVLHAD 745
             GV      K  +++ + I    D
Sbjct: 673 GQGVVLQRF-KNAKLLDIKIFNKQD 696


>gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
 gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84]
          Length = 752

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 246/743 (33%), Positives = 380/743 (51%), Gaps = 59/743 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGKNLLPPGGGDDDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++
Sbjct: 61  SEMGLRPNAAFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  
Sbjct: 121 DGDSPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME-IIRGPDFPTGA-VILGRTGIK 238
           GIAVGMAT+IP+HN  E+ D  + +I + D  ++ L+E  I GPDFPTG  +I  R  I 
Sbjct: 181 GIAVGMATSIPSHNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSII 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            +Y TGRG   +R    IE       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D
Sbjct: 241 ESYKTGRGGFRVRAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLED 300

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           +RDES      V+I   R   A +++  +++ + L+S F +NM  L+  + P+   L  +
Sbjct: 301 IRDESAEDIRVVLIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNEV 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK ++  R EV+ RR+++ L     R  +L G  IA  N+DEV+ IIR    P   +  +
Sbjct: 361 LKEWLDHRREVLQRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEP---KPVM 417

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+R                            L++ Q  AIL +RL  L  L   +IR E 
Sbjct: 418 MER--------------------------FGLTDNQVEAILNMRLRSLRKLEEFEIRKEF 451

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---D 529
           + L  E  E   +L+S  +    +  E+  VK +         RRT+  E     +    
Sbjct: 452 DGLSKEKSEIEVLLASDEKQWQTVAWEIGEVKKKFAKATEVGRRRTQFAEAPEADDAALQ 511

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           +  I +E + V VS  G++        RA +      S +  ++ D +   F   T   +
Sbjct: 512 QAMIEKEPITVVVSEKGWI--------RALKGHISETSTLTFKEGDALKVAFPAQTTDKI 563

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L  ++ G  Y     +LP G  +  G+ L  ++ +   + +                 +V
Sbjct: 564 LIITTGGKAYTLGGDKLPGG--RGHGEPLRIMVDMENDQDV-----LTAFVHDPQRKQLV 616

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            +T  GN      ++ +   R GK  M L + DE   +   +  + + +  +  + V FP
Sbjct: 617 ASTA-GNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSG-DHVAVVGENRKMVVFP 674

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +S I   +     GVR      G
Sbjct: 675 LSQIPEMS--RGKGVRLQRYKDG 695



 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 9/161 (5%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +  +GD +         D           +     +L  G                    
Sbjct: 544 TFKEGDALKVAFPAQTTDKILIITTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVL 603

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                   ++Q  L  S  G G   +  +   + R  KG +  +++  +E   LV   PV
Sbjct: 604 TAFVHDPQRKQ--LVASTAGNGFVVAETELVANTR--KGKQIMNLTTPDETKLLV---PV 656

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           +  D + +V +   ++  P+++I   SR  KGV +      
Sbjct: 657 S-GDHVAVVGENRKMVVFPLSQIPEMSR-GKGVRLQRYKDG 695


>gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
 gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3]
          Length = 750

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/745 (32%), Positives = 374/745 (50%), Gaps = 59/745 (7%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++++      +  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKNLVPPSGG-DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S R  +++GQGNFG++
Sbjct: 60  SEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 120 DGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +PD  ++ L+E I GPD PTG  +I  R  I  
Sbjct: 180 GIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E       QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+
Sbjct: 240 AYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDV 299

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V++   R   A +++  L+R + L+S   +NM  L+  + P+   L  +L
Sbjct: 300 RDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEVL 359

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A R++V+VRR+++ L     R  +L GL +A  NLDEV+RIIR    P+       
Sbjct: 360 SEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEPKQVMMAKW 419

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L++ Q  AIL +RL  L  L   +IR E +
Sbjct: 420 S-----------------------------LTDNQAEAILNMRLRNLRKLEEFEIRKEFD 450

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---EDE 530
            L  E  E   +L+S  +    +  E+  VK +         RRT+  +          +
Sbjct: 451 ELSSEKAEIEGLLASDEKQWQTVAWEIGEVKKKYAKATEIGRRRTQFADAPDADIEAIQQ 510

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +      S +  ++ D     F   T   +L
Sbjct: 511 AMIEKEPVTIVISQKGWI--------RALKGHMSDTSALTFKEGDGPKLAFPAQTTDKLL 562

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y     +LP G  +  G+ +  ++ +   + I T            +  ++ 
Sbjct: 563 LLTTGGKAYTLGADKLPGG--RGHGEPIRIMVDMENDQDILTAF------VHDPSRKLLL 614

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            +  GN      S+ +   R GK  M +   DE       T  + + +  +  + + FP+
Sbjct: 615 VSTGGNGFIVAESEMVANTRKGKQIMNVAMPDEAKLAVPVTG-DHVAVVGENRKLLAFPL 673

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQV 735
           S +   +     GVR      G  V
Sbjct: 674 SQVPEMS--RGKGVRLQRYKDGGVV 696


>gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
 gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43]
          Length = 748

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/742 (31%), Positives = 364/742 (49%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++         I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M
Sbjct: 1   MGKSLVPPGG--GDDIQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+     + KCA+I GEVMG +HPHG+ +IYDAL R+AQD+++R  L+ GQGNFG++
Sbjct: 59  SDMGLRSGGSFKKCAKIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE ++   A  L++ +G+D VDFR  YD    EP VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTESKMTAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGAT 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I  PD  ++ L+E ++GPDFPTG + I  R  +  
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E T     QIV+TE+PYQV K+ ++EKIAEL+  +R+  + D+
Sbjct: 239 AYKTGRGGFRVRAKWETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDV 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           RDES      V+I   R     +++  L+R T L+S   +N+  L+  + P+   L  +L
Sbjct: 299 RDESAEDVRLVLIPKSRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             ++A R EV+ RR+++ L     R  +L G  IA  NLDEV+RIIR    P+       
Sbjct: 359 SEWLAHRREVLQRRSRHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEPK------- 411

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                 +    T  LS+VQ  AIL +RL  L  L   +IR E +
Sbjct: 412 ----------------------LELMKTFELSDVQAEAILNMRLRSLRKLEELEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDM---EDE 530
           +L  E  E   +L+S ++    +  E+ +V+           RRT   E  +      ++
Sbjct: 450 ALTAEKAEIESLLASDAKQWQTVAWEVGNVRKTFSKETELGARRTNFAEAPVADLAAIEQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + V +S  G++        R  +      + +  +D D +   F  +T   ++
Sbjct: 510 AMIEKEPITVVISEKGWI--------RGMKGHLPDFASLQFKDGDGLKLAFHANTTDKLV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             ++ G  Y     +LP G              L     +             +   ++ 
Sbjct: 562 IVTTGGKAYTLGADKLPGGRGHGE--------PLRIMVDMDNDQAVLTAFVHDSARKLLM 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A+  GN      SD +   R GK  M +   DE       +  + + +  +  + + F +
Sbjct: 614 ASTAGNGFIVAESDMVANTRKGKQIMNVGLPDETRLCVPVSG-DHVAVIGENRKMLIFAL 672

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +   +     GVR      G
Sbjct: 673 SQLPEMS--RGKGVRLQRYKDG 692


>gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
 gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           MolK2]
          Length = 783

 Score =  557 bits (1435), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/812 (31%), Positives = 377/812 (46%), Gaps = 77/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPAE--ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       L
Sbjct: 239 IYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 300 RDE-------------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSV 339
             E                         R+V E K +        N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L++ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLTDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E       E  ++ E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRA-AAEVKVIDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G     G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +             V+ AT+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LA------GHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVAED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
              +   +  G+ + FP+S ++  A     GV  + L K + ++       A        
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLVQALAFGPAGFAVSGAG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                 + Q    +   E     +        
Sbjct: 732 PRSGKAAEQAFTTTRAQEPYAGKRARKGKAIE 763


>gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31]
 gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31]
          Length = 759

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 239/753 (31%), Positives = 376/753 (49%), Gaps = 71/753 (9%)

Query: 1   MTEHIISSDEE-EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M + ++      +   I    +++ +   YL YA++ I  RA+PD+RDGLKPVHRR+L  
Sbjct: 1   MNKPVLPPGGPGDGDRILDEPLSEALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  M +       KCA++ GEVMG +HPHG+ +IYDAL R+AQ++S R+ L++GQGNFG+
Sbjct: 61  MNNMRLNPEGGARKCAKVVGEVMGNFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTEC++  AA  LLD + +D VDF+P+YDG  +EPVVL + +PN+L NG 
Sbjct: 121 IDGDSAAAMRYTECKMTAAAVLLLDGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIK 238
            GIAVGMAT+IP HN  E++D C+ ++  P+     ++E + GPDFPTG  ++  R  + 
Sbjct: 181 SGIAVGMATSIPPHNPAELIDACLLLLSKPEATTAEILERVPGPDFPTGGVIVESRESLL 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TGRG +  R     E T     QIVVTEIPYQV K+ ++E++A+L+  K+   + D
Sbjct: 241 ETYETGRGGVRTRAKWEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGD 300

Query: 299 LRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIG 356
           +RDES     R+V+E K +    +V++  L++ ++L+S F VN+  L+         +  
Sbjct: 301 VRDESAE-DIRLVLEPKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQ 359

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            L AF+A R +V+ RR +  L+K   R H+L GL IA  NLDEV+RI+R+   P+     
Sbjct: 360 ALIAFLAHRRDVLTRRARNRLSKIEARLHILDGLLIAYLNLDEVIRIVRYEDEPKQ---- 415

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS++Q  AIL  RL +L  L   +IR E
Sbjct: 416 -------------------------KLMAAFALSDIQADAILNTRLRQLAKLEEMEIRRE 450

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--------DTPRRTRIVEGLLDME 528
              L  E    L +L+S  +   ++   L  V+  L         T R T ++   +  +
Sbjct: 451 HAQLVEERDGILAMLASDKKQWDLVGTGLRQVRAVLLKIKHPLDKTGRATGVIGRSVFED 510

Query: 529 D---------EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                     E  IVRE + V +S  G++        RA +   +  S +  ++ D +  
Sbjct: 511 APVVDAEAALEALIVREPITVILSDRGWI--------RAAKGKVEDPSELKFKEGDKLGF 562

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           L    T   +L F+S G  +      LP    +  G+ +  ++ L+   +I  + PF   
Sbjct: 563 LVPAETTDKLLLFTSDGRFFTIGCANLPSA--RGHGEPVRMMIELDDKVKIIDVFPFKAG 620

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                      A+K G        + +   ++GK  + +       +       + + + 
Sbjct: 621 RKR------FLASKQGYGFLMPEEEALANRKAGKQVLTV--DAAGAAFCLEAVGDQLAVV 672

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
              G+ + FP+  +         GV+  S  +G
Sbjct: 673 GDNGKILIFPLEELPEMP--RGKGVKLQSYREG 703



 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 12/162 (7%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +GD++    +               +  +     +         ++    ++  +  
Sbjct: 553 KFKEGDKL-GFLVPAETTDKLLLFTSDGRFFTIGCANLPSARGHGEPVRMMIELDDKVKI 611

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR-SGKGIRATDVSKINEIGALVAVFP 846
                 K   +  L  S++G+G      +  ++NR +GK +        +  GA   +  
Sbjct: 612 IDVFPFKAGRKRFL-ASKQGYGFLMPEEE-ALANRKAGKQVLTV-----DAAGAAFCLEA 664

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
           V   DQ+ +V D G ++  P+ E+    R  KGV + S  + 
Sbjct: 665 V--GDQLAVVGDNGKILIFPLEELPEMPR-GKGVKLQSYREG 703


>gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
 gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480]
          Length = 772

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 250/813 (30%), Positives = 379/813 (46%), Gaps = 74/813 (9%)

Query: 1   MTEHIISSD---EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
           MTE     D    E   G  ++++    + +YL YAI+V+ GRA+PD+ DG KPV RRIL
Sbjct: 1   MTEQATLFDGDTPEPPDGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRIL 60

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           F M Q+G+    K  K A + G+V+GK HPHG+ ++YDAL RMAQ +SLR  LI+GQGNF
Sbjct: 61  FAMNQLGLNAAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNF 120

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS DGD  AA RYTE RL   +  LLD++   TVDF+PNYDGS +EP +L  R P VL+N
Sbjct: 121 GSRDGDGAAAMRYTEARLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLN 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTG 236
           G  GIAVGMAT IP+HNL EV    VA+I NP +    LM II GPDFP+G   I     
Sbjct: 181 GASGIAVGMATEIPSHNLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAA 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK----- 291
           +   YA GRGS+ +R +  IE+ +  + Q VVTE+P+  +   +LE+I EL   K     
Sbjct: 241 LSEMYANGRGSLKVRALWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGK 300

Query: 292 ----------RIVDIADLRDESDRQGYRVVIEL-----KRGASADVILNQLYRYTSLQSL 336
                     + + ++ L    D  G    + L      +        N L   TSL++ 
Sbjct: 301 KALSPDQLAQKQLMLSLLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETS 360

Query: 337 FSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+N+V +    +P +  L  IL+ ++AFR + V RR+ + L K  DR H+L G    + 
Sbjct: 361 ASINLVMIGGDGRPRQKGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILL 420

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+RIIR S  P+ A                               G   LS+ Q  
Sbjct: 421 NIDEVIRIIRESDEPKPA-----------------------------LMGAFKLSDRQAE 451

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
            ILE+RL +L  L    I+ EL  L  E     ++L++   +  +I +E+ + +      
Sbjct: 452 DILEIRLRQLARLEAIKIQQELAGLRTEKSTLEELLNNPGAMKKLIIKEIDADEKRFGDA 511

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           RRT I         E  ++ E + V +S  G++        RA+   G   +    +  D
Sbjct: 512 RRTLIE-AAERATVEQKVIDEPVTVVISQKGWL--------RARTGHGHDPAQFAFKAGD 562

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
            +   F   T  S+L F S G +Y   V  LP         + +  L+            
Sbjct: 563 DLYRTFECRTLDSLLAFGSNGRIYSIAVSSLPGARGDGAPISALVELASGS--------T 614

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-N 694
                +   +  ++ A+  G     + +D I  N++GK  + LD+ D  L  +      +
Sbjct: 615 VLHYFAGSADSTMLLASTAGYGFIARAADMIGRNKAGKAFITLDAGDLPLPPQMLIPSAS 674

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            +   +  G+ + F +  ++  +G    G+  ++L  G+++++   V             
Sbjct: 675 SVACLSGEGRLLVFGLDELKTMSG--GRGMILMALEDGEKLLAAQPVSQRGVLVSGIGRG 732

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            K                   +   ++E  +  
Sbjct: 733 GKTQEVSLSATGLALHTGKRARKGKALESKLKP 765


>gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
 gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633]
          Length = 746

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 245/769 (31%), Positives = 375/769 (48%), Gaps = 62/769 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I   S  D + + YL YA++ I  RA+PD RDGLKPVHRR+L+ M  + +  +  +
Sbjct: 8   DGGRIFDESFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRLLKLSPDTAF 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ G+V+G++HPHG+ A+Y+AL R+AQD++ R  L+EGQGNFG+VDGD  AA RYT
Sbjct: 68  KKCARVVGDVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNVDGDGAAAMRYT 127

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL +AA  +L D  + TVDFR  YDG  +EP+VL A +PN+L NG  GIAVGMATNIP
Sbjct: 128 EARLTEAAILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSAGIAVGMATNIP 187

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVI 250
            HN  E+ D    +I  P    + L+  ++GPDFPTG V +     I  AY TGRG   +
Sbjct: 188 PHNAAELCDAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILEAYETGRGGFRL 247

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R    +E+    + QIVVTEIPY V KA ++E+IA L+ +K++  +AD+ DES     R+
Sbjct: 248 RARWEVEELGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADVMDESAE-DVRL 306

Query: 311 VIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
           ++E K R     +++  +++ T L+  F++N+  L+    P    L   L+ ++  R  V
Sbjct: 307 ILEPKSRTIDPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEALQIWLDHRRVV 366

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           VVRR    L    DR  VL G  +A  NLDEV+RIIRF  +P+                 
Sbjct: 367 VVRRATTRLEHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHPKD---------------- 410

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                            T  L++ Q  AIL +RL  L  L   +IR+E + L  E  E  
Sbjct: 411 -------------ELIKTFSLTDRQAEAILNMRLRSLRKLEEMEIRDEQSRLEGERDELN 457

Query: 489 DILSSRSRLLGIIKQELLSVKDELDT-----PRRTRI----VEGLLDMEDEDCIVREDMV 539
            +++  S     +  E+  VK           RRT         L DM +E  I RE + 
Sbjct: 458 ALIADESLQWKKVDSEVADVKKRFGPNTELGKRRTTFADAPAADLADMVEEALIPREPIT 517

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + +S +G+V        RA +      +G+  +D D         T   +L  ++ G VY
Sbjct: 518 IVLSRMGWV--------RALKGHTDDVTGIKHKDGDETAFSLKAETTDKILMLTTDGRVY 569

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                +LP G     G+ +  ++ +++        P    + S +   ++ +T  G+   
Sbjct: 570 TLDASKLPGGRGF--GEPVRLLIDMDESAE-----PVALFKYSPDRKLLLASTS-GHGFV 621

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
               +   I R+G+  + +    + +     T  + I +  +  + + F    I      
Sbjct: 622 VAEKELPAIKRAGRQVLNVIDGHKAMMALPMTG-DRIAVLGENKKLLVFAADEIPEMV-- 678

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
              GVR +    G +V  + +    +          +H+    R   G 
Sbjct: 679 RGKGVRLLGGKAG-EVADITVFNAEEGLVRVDPAGRRHLVEDWRYYEGK 726


>gi|159037301|ref|YP_001536554.1| DNA topoisomerase IV subunit A [Salinispora arenicola CNS-205]
 gi|157916136|gb|ABV97563.1| DNA topoisomerase (ATP-hydrolyzing) [Salinispora arenicola CNS-205]
          Length = 827

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 283/895 (31%), Positives = 412/895 (46%), Gaps = 116/895 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S+ ++    +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G 
Sbjct: 11  LSAFDQAGARVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILWSMYESGH 70

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ +VK AR+ G+VMGKYHPH + AIYDAL R+AQD+SL   LI+G GNFGS D D P
Sbjct: 71  RPDRGHVKSARVVGDVMGKYHPHSDVAIYDALVRLAQDFSLNTPLIDGHGNFGSPD-DGP 129

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE R+ + A  L+ +LG+DTVD  PNYDGS  +P VL A +PN+LVNG  GIAVG
Sbjct: 130 AAARYTEARMSREAMLLVGELGEDTVDLEPNYDGSLTQPTVLPAAFPNLLVNGASGIAVG 189

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+  HNLGEVV     +I++PD  LD LME + GPD PTG ++LG   ++ AY TGR
Sbjct: 190 MATNMIPHNLGEVVTAARWLINHPDATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGR 249

Query: 246 GSIVIRGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRDE 302
           G + +R        + S  R+ I V E+PY +    ++  +   V + KR+  IAD++D 
Sbjct: 250 GVVRMRAKVEIGPIEGSRGRQAITVVELPYGIGAEKVIAAVTNEVTKTKRLTGIADVKDL 309

Query: 303 SDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           +DR  G R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F
Sbjct: 310 TDRENGTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVF 369

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +A R EVV RR+ Y   +  +R H++ GL +A+ ++D+VVR+IR S + + A+  LM+R 
Sbjct: 370 LAHRYEVVTRRSAYRRRRREERLHLVDGLLVALLDIDQVVRLIRGSEDAQAAKEGLMRR- 428

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSEVQ   IL+  L RLT   R ++  E   L 
Sbjct: 429 -------------------------FGLSEVQATYILDTPLRRLTRYDRLELEAEQEKLR 463

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV------- 534
            EI E   +L  R  L  ++  EL +V  +   PRRT +V+G L       +        
Sbjct: 464 SEIAELSRLLDDRKVLRKVVSNELAAVVKQSAAPRRTTLVDGDLKEVLAASVPSGPLEVA 523

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +   V +S  G V R             +G         D V  +   +    VL  +S
Sbjct: 524 DDPCQVILSSTGLVARTAAE----SEEAAEGSRRHGRVRHDAVRAVAHSTARGRVLLVTS 579

Query: 595 LGFVYKEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
            G  +K  V  LP+   Q        G ++  ++ L  GE +  I P     S+  +  +
Sbjct: 580 GGRAFKVDVLPLPVLPEQSGTVSLRGGMSVAELVPLAPGETVVGIAPLG--PSAEGSPGL 637

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVR 707
              T+ G V+       +         + L   DE++           +   T     +R
Sbjct: 638 ALGTRRGMVKVCAPEWPV--RADEFEVISLRDGDEVVGATWLTDGAESLTFVTSEASLLR 695

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           +    +R   G    GV G+ L+   +V+    V   D  + E                 
Sbjct: 696 YSTGLVRP-QGLRGGGVAGVGLSGDARVVFFGAVRTDDPTHGEP---------------- 738

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNRSGKG 826
                                            + V+  G   K T    +    R+  G
Sbjct: 739 ---------------------------------MVVTSTGATVKVTPFAAYPAKGRATGG 765

Query: 827 IRATDVSKINEIGAL--VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
           +R+    K     A+  V   PV         +  G  + +P  + R   R   G
Sbjct: 766 VRSQRFLKGETEVAVAWVGPRPVG-------ATATGEPVELPAADPR---RDGSG 810



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 85/267 (31%), Gaps = 20/267 (7%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           ++   V  +  G V R           S +        D + +V   T    +LL T  G
Sbjct: 524 DDPCQVILSSTGLVARTAAESEEAAEGSRRHGR--VRHDAVRAVAHSTARGRVLLVTSGG 581

Query: 704 QCVRF---PISAIRVFAG----RNSVGVR-GISLAKGDQVISMAIVLHADADYDERICYM 755
           +  +    P+  +   +G    R  + V   + LA G+ V+   I     +        +
Sbjct: 582 RAFKVDVLPLPVLPEQSGTVSLRGGMSVAELVPLAPGETVVG--IAPLGPSAEGSPGLAL 639

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                  ++ + +           S+           L    + +  V+ +    R S+ 
Sbjct: 640 GTRRGMVKVCAPEWPVRADEFEVISLRDGDEVVGATWLTDGAESLTFVTSEASLLRYSTG 699

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIR-VPVNEI 870
             R     G G+    +S       +V    V  +D    + ++V+  G  ++  P    
Sbjct: 700 LVRPQGLRGGGVAGVGLS---GDARVVFFGAVRTDDPTHGEPMVVTSTGATVKVTPFAAY 756

Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897
               RAT GV      K E  V+V  +
Sbjct: 757 PAKGRATGGVRSQRFLKGETEVAVAWV 783


>gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
 gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551]
 gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum
           IPO1609]
          Length = 783

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/764 (33%), Positives = 371/764 (48%), Gaps = 77/764 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPAE--ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       L
Sbjct: 239 IYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 300 RDE-------------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSV 339
             E                         R+V E K +        N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L++ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLTDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E       E  ++ E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRA-AAEVKVIDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G     G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +             V+ AT+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LA------GHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPVAVAED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
              +   +  G+ + FP+S ++  A     GV  + L K + ++
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLV 715


>gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 808

 Score =  557 bits (1434), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/764 (31%), Positives = 370/764 (48%), Gaps = 73/764 (9%)

Query: 2   TEHIISSDEEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           ++    S   +   + +  + I    + +YL YA++V+ GR +PD+ DG KPV RR+L+ 
Sbjct: 38  SDTPPPSRTVDLSELPNGRIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYA 97

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  MG+    K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 98  MNDMGLTATAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 157

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++ + TVDF+PNYDG+F+EP +L AR P +L+NG 
Sbjct: 158 RDGDGAAAMRYTEARLTPFADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGA 217

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIK 238
            GIAVGMAT+IP+HNL EV D C  +I  PD     +M ++ GPD+P GA I+     I 
Sbjct: 218 SGIAVGMATDIPSHNLREVADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIH 277

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  GRGS+ +R    +E+ +  + QI VTE+P+ V+   +LE+I EL   K       
Sbjct: 278 KVYEGGRGSLRVRARWSLEQLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKA 337

Query: 299 LRDES-------------------DRQGYRVVIELKRGAS-ADVILNQLYRYTSLQSLFS 338
           L  E                    ++   R+V E        + ++N L  +TSL+   S
Sbjct: 338 LTQEQGNMKALLLSVLDSVRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNAS 397

Query: 339 VNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           VN+V +    +P++  ++  L  +V FR   V RRT++ L +   R H+L G  IA  N+
Sbjct: 398 VNLVTIGLDGRPQQKGIVPALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNI 457

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           D+V+++IR S  P+                                  T +LSEVQ   I
Sbjct: 458 DQVIKVIRESDEPKR-----------------------------DLIATFHLSEVQAEDI 488

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I  EL  L  E +    +L+ R+ +   I +E+ + K +    RR
Sbjct: 489 LEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKFGDDRR 548

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTV-SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           T I               +D V  + S  G++        RA+   G   S +  +  D 
Sbjct: 549 TLIESAEKVTSGAVVPTADDPVTIIVSRSGWL--------RARSGHGIDISTLTFKAGDD 600

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +       T TS+  F + G  Y      +P G     G  L +++ L  G R+T ++  
Sbjct: 601 LLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGD--GVPLTSLIELQGGGRLTHVIVI 658

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
            +  +       + A+  G       +D +   +    A       E++        + +
Sbjct: 659 DQTANY------LIASSGGYGYVCAGADLLT-RQKAGKAFATLEPGEVMHPPAKIAGDTV 711

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                 G+ V FP+S ++V       GV+ + L   + ++++AI
Sbjct: 712 SAVCSGGRLVLFPLSEVKVMP--KGKGVKLMELEARETLVAVAI 753


>gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
 gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2]
          Length = 761

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/805 (31%), Positives = 405/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHNVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822]
 gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis]
          Length = 771

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 252/760 (33%), Positives = 366/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       D        ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I NP +  + L+ ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------ 291
              YATGRGS+  R     E+ +  + Q+VVTE+P   +   +LE+I E+   K      
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 292 ---------RIVDIADLRDESDRQGYRVVIEL-----KRGASADVILNQLYRYTSLQSLF 337
                    + V ++ L    D  G    + L           D  +N L   TS++S  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 338 SVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR +  P  A                                   L+E Q   
Sbjct: 421 VDEVIQTIREAEEPRAA-----------------------------LMARFGLTERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     D+L +   L  ++ +E+     +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I         E  +V E + V VS  G++        RA++  G        +  D 
Sbjct: 512 RTLIE-TAERAVLETKVVDEPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP       G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGD--GQPVTTMIDLEAGTRIVHTIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             D         + AT+ G     +LSD     R+GK  + L+  DE+L  V        
Sbjct: 621 ASDSRW------LLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSG-GGRGTILMGLDTADKL 713


>gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
 gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4]
          Length = 748

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 364/740 (49%), Gaps = 61/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPP---SDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG +++     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A     
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 413 ------------------------LMARFELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +             
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +GV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVTELAGVAFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G     G  +  ++ L+ G  I   +P            ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGGRGF--GDPVRLMVDLDDGTEIVAALP------YKPESKLLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     +      + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVL-LVPAEGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           S +    GR   GVR     
Sbjct: 672 SEVTEL-GRG-KGVRLQRCR 689


>gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498]
          Length = 749

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 231/747 (30%), Positives = 368/747 (49%), Gaps = 60/747 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG + +  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L   K     +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NL+EV++IIR    P+       
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKK------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  +IL +RL  L  L    +R E +
Sbjct: 413 -----------------------ELILRFKLTENQAESILNMRLRSLRKLEEFQLRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           SL IE ++  ++L+S  +   +I +E+  V+           RRT          +   +
Sbjct: 450 SLKIEKEKLQNLLNSNIKQWKVIAEEITRVRKIFGPETFLGKRRTTFEDAPRHDENDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G+V        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWV--------RALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G        ++  ++         +               + 
Sbjct: 562 VISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGKR--------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      +D I   R GK  M + S D +       + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLC-IPVEGDYIAIVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             I   +     GVR      G  V +
Sbjct: 673 EQIPEMS--RGKGVRLQRYKDGGIVDA 697



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S  G G   S  D   + R GK +          + +L    PV + D I +V +  
Sbjct: 612 LLISSYGNGFIVSETDIIANTRKGKQVMNVK-----SLDSLKLCIPV-EGDYIAIVGENR 665

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++   + +I   SR  KGV +        V
Sbjct: 666 KMLIFSIEQIPEMSR-GKGVRLQRYKDGGIV 695


>gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
 gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797]
          Length = 802

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 265/813 (32%), Positives = 407/813 (50%), Gaps = 54/813 (6%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVE 66
           +   E   I  V I+D  +  YL YA++VI  RA+PD+RDGLKPV RRIL+ M   + + 
Sbjct: 16  TPGTESDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLM 75

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            N K  KCA+I G+  G YHPHG+A++YDAL R+AQD++LR  LI GQGNFGS+ G P A
Sbjct: 76  ANAKPRKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAA 135

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL   A  L+++L   TV+ RPNYDG+  EPVVL AR+PN+LVNG  GIAVGM
Sbjct: 136 AARYTEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGM 195

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGR 245
           ATNIP HNLGEV+  CV +I + D  +  LM+ I+GPDFP G  I   +  +   Y  GR
Sbjct: 196 ATNIPPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGR 255

Query: 246 GSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G + +RG    E    +   +++VV  +PY V   ++L +I  +V  +++  + D+ DE+
Sbjct: 256 GPVKVRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADET 315

Query: 304 -DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-----PERFTLIGI 357
            D+ G ++V+E+K  A  + ++  LY++T+L+  FSVNM  L   +     P R  L  +
Sbjct: 316 DDKNGLKIVLEIKPDADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEM 375

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+ F+ FR   V +R +Y L     R H+L G AI   +LD+ +++IR S   + A ++L
Sbjct: 376 LQYFLDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKL 435

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M                              L E+QT AILEL+L R++ L  + IR EL
Sbjct: 436 MA--------------------------NFPLDEIQTMAILELQLYRISKLEINTIREEL 469

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVR 535
                E ++   IL+S  RL  +++ EL  + DE    R+T++       + + +  IVR
Sbjct: 470 AEKEAEAEKIRKILASDKRLWKVVENELKELADEFPEKRQTKLGSSEEITEFDPQAYIVR 529

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E+  V VS  G++KRV        + G +  +    R+ D V  +   ST   V+FFSS 
Sbjct: 530 ENTNVVVSREGWIKRVGRL---KTKEGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSD 586

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN---------L 646
           G  Y   + ++P+      G+ L     ++ G  +   +      +  +           
Sbjct: 587 GVAYTLPIEQVPVS--SGYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTP 644

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           +V+  T+ G   R   S F   +    +   +L   D ++      +   + + T+  + 
Sbjct: 645 HVLIVTEKGQFMRISFSLFRTASTKAGRKYCRLGKDDRVVYAGLVEEAETMFIATQDARV 704

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +   I    + +     GV+GI L KGDQVI +  +              K M+  +   
Sbjct: 705 LHCEIEEAALLSN-AGKGVKGIRLEKGDQVIGVLQLTRPSDCLRVINTAGKKMTFGQMKY 763

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              +     +K               E+   ++
Sbjct: 764 GVTSRGGKGVKTSQRSGFAEILYPPIEVVDWDE 796



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 47/248 (18%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  ++ G ++R           + ++A  +    D +L+V   +  + ++  +  G    
Sbjct: 534 VVVSREGWIKRV--GRLKTKEGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYT 591

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            PI  + V +G      +   ++ G  +++           D+        +        
Sbjct: 592 LPIEQVPVSSGYGEPLSKHARMSDGAVLVAAVTTDSRFTPEDKATKKQPLPT-------- 643

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKG 826
                                           +L V+EKG   R S   FR  S ++G+ 
Sbjct: 644 ------------------------------PHVLIVTEKGQFMRISFSLFRTASTKAGR- 672

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                  ++ +   +V    V + + + + +    ++   + E  + S A KGV      
Sbjct: 673 ----KYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLE 728

Query: 887 KDERVVSV 894
           K ++V+ V
Sbjct: 729 KGDQVIGV 736


>gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
 gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup]
          Length = 749

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 229/747 (30%), Positives = 372/747 (49%), Gaps = 60/747 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLPFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLKLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +PD++ + L + + GPDFPTG + +  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  S     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRVGRGFFRLRSRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           +DES      V++   R    ++++  L++ T  +  F +N+  L+  K     +L   L
Sbjct: 299 QDESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y L++   R  +L G  IA  NLDEV++IIR    P   +++L+
Sbjct: 359 QQWLEHRQEVLIRRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEP---KKQLI 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            R                            L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 416 SR--------------------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           SL  E ++  ++L+S  +   II +E+  V++          RRT         LD   +
Sbjct: 450 SLKAEKEKLQNLLASPIKQWKIISEEIKKVRNTFGPETPLGKRRTTFEEAPRHDLDDIQQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPITIVISEKGWM--------RALKGHLNDYKALSFKEGDSLKLAFPAFTTDKIV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G              +     +                 ++ 
Sbjct: 562 LISTGGKFFAIGANSLPGGRGHGE--------PIRLLVDMDDEHDVLTAFVHHAEEKLLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + HGN      ++ I   R GK  M + + D++         + + +  +  + + F I
Sbjct: 614 VSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLC-VQVNGDHVAVVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             I         GVR     +G  V +
Sbjct: 673 EQIPEMN--RGKGVRLQRYKEGGVVDA 697



 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 50/167 (29%), Gaps = 9/167 (5%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +S  +GD +           D    I       A                       +
Sbjct: 538 KALSFKEGDSLK--LAFPAFTTDKIVLISTGGKFFAIGANSLPGGRGHGEPIRLLVDMDD 595

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +     +   E+ +L VS  G G   SS +   + R GK +             +   
Sbjct: 596 EHDVLTAFVHHAEEKLLLVSSHGNGFIVSSAEVIANTRKGKQVMNVK-----APDKVKLC 650

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
             VN  D + +V +   ++   + +I   +R  KGV +    +   V
Sbjct: 651 VQVN-GDHVAVVGENRKMLIFSIEQIPEMNR-GKGVRLQRYKEGGVV 695


>gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
 gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426]
          Length = 761

 Score =  556 bits (1433), Expect = e-156,   Method: Composition-based stats.
 Identities = 256/805 (31%), Positives = 405/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957]
 gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957]
          Length = 783

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 258/812 (31%), Positives = 377/812 (46%), Gaps = 77/812 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I  D  E     ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MEQQDILFDPSEPAE--ALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS 
Sbjct: 59  HEMGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSR 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  
Sbjct: 119 DGDGAAAMRYTEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGAS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKN 239
           GIAVGMAT IP+HNL EV    VA+I +  +    L + + GPDFP G  I+     I  
Sbjct: 179 GIAVGMATEIPSHNLREVAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQ 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       L
Sbjct: 239 IYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSL 298

Query: 300 RDE-------------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSV 339
             E                         R+V E K +        N L  +TSL+S  ++
Sbjct: 299 TPEQLQLKQTLLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAI 358

Query: 340 NMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R E V RRT+Y L K  DR H+L G  + +  ++
Sbjct: 359 NLVMIGTDGRPRQKGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIE 418

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L++ Q   IL
Sbjct: 419 EVIRIIRESDEPKAA-----------------------------LIQAFNLTDRQAEDIL 449

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL +L  E  E   +L S + +   I +E+ +   +    RRT
Sbjct: 450 EIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRRIVKEIETDAKQYGDDRRT 509

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I E       E  ++ E + V VS  G+V        R ++  G   +    +  D + 
Sbjct: 510 LIQEERRA-AAEVKVIDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLY 560

Query: 579 DLFIVSTHTSVLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
           D F   T  ++L F +      G VY   V  LP G     G  L  ++ L  G  I   
Sbjct: 561 DTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHT 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +             V+ AT+ GN    K+ D +   + GK  + LD  D+        ++
Sbjct: 619 LA------GHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVAED 672

Query: 694 ND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
              +   +  G+ + FP+S ++  A     GV  + L K + ++       A        
Sbjct: 673 AYGVACLSANGRLLLFPLSEVKTLAS-GGRGVILMELEKNETLVQALAFGPAGFAVSGAG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                 + Q    +   E     +        
Sbjct: 732 PRSGKAAEQAFTTTRAQEPYAGKRARKGKAIE 763


>gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395]
 gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385]
 gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33]
 gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395]
 gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9]
 gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33]
 gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286]
 gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236]
 gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10]
 gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101]
 gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27]
 gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385]
          Length = 761

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/805 (31%), Positives = 405/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3]
          Length = 749

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 237/747 (31%), Positives = 372/747 (49%), Gaps = 64/747 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I S+ +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLKLNPGQPYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D + L + + GPDFPTG + +  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L   K     +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NLDEV++IIR S  P+       
Sbjct: 359 QQWLQHRKEVLIRRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEPKK------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  +IL +RL  L  L    IR E  
Sbjct: 413 -----------------------ELILRFKLTENQAESILNMRLRSLRKLEEFQIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           SL IE ++  ++L+S  +   II +E+  V+           RRT         ++   +
Sbjct: 450 SLKIEKEKLQNLLASNIKQWKIIAEEITRVRKIFGPETFLGKRRTTFEEAPRHDVNDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLNDYKTLSFKEGDCLKLAFSAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G        ++  +          +               + 
Sbjct: 562 VISTGGKFFTISANILPGGRGHGEPIRILVDMDNEHNILTAFVHNTQRKR--------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      SD I   R GK  M + S D +       + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSLKLC-IPVEGDYIAIVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISL-AKGDQVI 736
             I       S G +G+ L    D V+
Sbjct: 673 EQIPEM----SRG-KGVRLQRYKDSVV 694



 Score = 39.4 bits (90), Expect = 2.8,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 59/171 (34%), Gaps = 12/171 (7%)

Query: 725 RGISLAKGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           + +S  +GD + ++ +                  +SA          E   +  D   E 
Sbjct: 538 KTLSFKEGDCLKLAFSAFTTDKIIVISTGGKFFTISANILPGGRGHGEPIRILVDMDNEH 597

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
           NI        + K    L +S  G G   S  D   + R GK +            +L  
Sbjct: 598 NILTAFVHNTQRKR---LLISSYGNGFIVSESDIIANTRKGKQVMNVK-----SPDSLKL 649

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             PV + D I +V +   ++   + +I   SR  KGV +    KD  VV V
Sbjct: 650 CIPV-EGDYIAIVGENRKMLIFSIEQIPEMSR-GKGVRLQR-YKDSVVVDV 697


>gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1]
 gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1]
          Length = 748

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 364/740 (49%), Gaps = 61/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPP---SDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG +++     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A     
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 413 ------------------------LMARFELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLD---MEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +             
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +GV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVTELAGVAFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G     G  +  ++ L+ G  I   +P            ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGGRGF--GDPVRLMVDLDDGTEIVAALP------YKPESKLLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     +      + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVL-LVPAEGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           S +    GR   GVR     
Sbjct: 672 SEVTEL-GRG-KGVRLQRCR 689


>gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum
           CM4]
 gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum
           CM4]
          Length = 748

 Score =  556 bits (1432), Expect = e-156,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 364/740 (49%), Gaps = 61/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPP---SDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG +++     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A     
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 413 ------------------------LMARFELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLD---MEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +             
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      +GV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVTELAGVAFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G     G  +  ++ L+ G  I   +P            ++ 
Sbjct: 561 LLASNGKVFTLEASKLPGGRGF--GDPVRLMVDLDDGTEIVAALP------YKPESKLLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     +      + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVL-LVPAEGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           S +    GR   GVR     
Sbjct: 672 SEVTEL-GRG-KGVRLQRCR 689


>gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
 gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226]
          Length = 761

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 254/805 (31%), Positives = 404/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E  +  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERNKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
 gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587]
          Length = 761

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/805 (31%), Positives = 404/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
 gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)]
          Length = 761

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 255/805 (31%), Positives = 405/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|33860565|ref|NP_892126.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
 gi|33633507|emb|CAE18464.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 813

 Score =  555 bits (1431), Expect = e-156,   Method: Composition-based stats.
 Identities = 241/710 (33%), Positives = 395/710 (55%), Gaps = 44/710 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++  TS+S+ +EMQ SYL YA++VI+GRA+PD RDGLKPV RRILF M ++G+  ++ + 
Sbjct: 3   KEKFTSISLQEEMQRSYLEYAMSVIIGRALPDARDGLKPVQRRILFAMHELGLTPDRPFR 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ G+V+GKYHPHG+ A+Y+AL R+ QD+S +   ++G GNFGSVD DPPAA RYTE
Sbjct: 63  KCARVVGDVLGKYHPHGDQAVYEALVRLVQDFSTKYPTLDGHGNFGSVDNDPPAAMRYTE 122

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RL   AH   L ++G +TV +  N+DGS QEP +L A+ P +L+NG  GIAVGMATNIP
Sbjct: 123 TRLAPIAHECFLQEIGSETVSYSNNFDGSQQEPDILPAQLPFLLLNGSSGIAVGMATNIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGE+VDG +A+I++ +I    L +II GPDFPTG  ++  + +   Y  GRGS+ +R
Sbjct: 183 PHNLGEIVDGLIALINDKEISDLRLSKIILGPDFPTGGELICNSAMNEVYLQGRGSVTVR 242

Query: 252 GVSHIEKTSGD-----REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           GV   E+ +       +  ++++E+PYQ++KA  +EK+AELV   +I  I+D+RDESDR 
Sbjct: 243 GVIKNEEINLGKGRHKKNALIISELPYQISKAGWIEKLAELVNLGKIDGISDIRDESDRD 302

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELK+ ++++++++ L++ T+LQS F    +AL   KP + TL   L  F+ FRE
Sbjct: 303 GMRVVIELKKDSNSEIVVSNLFKKTALQSNFGAIFLALVDGKPIQLTLRKYLNYFLEFRE 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + +RTKY L  A ++  +L G +IA  N+ +++ +I+ S N   A+  L+ +      
Sbjct: 363 ETIRKRTKYFLRIASEKFEILEGFSIATKNIKDIIEVIQNSENATEAKSILIVK------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               + LSE Q  A+L + L +LT L R  I  ++  L  + K 
Sbjct: 417 --------------------LSLSEKQADAVLSMPLKKLTTLERKQIEIDMKELLEKKKY 456

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             ++L++R  LL  + +EL S+K + +  R+T+I++ +   ++ D I  + +   ++   
Sbjct: 457 LNNLLNNRRLLLDTLIEELKSLKKKFNVKRKTKILKDINQEKEIDTINNQILEDLINKET 516

Query: 547 YVKRVPLSVYRA--QRRGGKGRSGVVMRDEDFVTDLFIVSTHT--SVLFFSSLGFVYKEK 602
            +       ++        K         ++     FI        ++  +S G + +  
Sbjct: 517 KISVDNRFYFKKIIYNNYKKILDHENKFIDNKNVQKFICRIDKSLKIIGITSSGKIIQI- 575

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            W+  I S     K ++  +   +       +       S    Y+   +  G  ++   
Sbjct: 576 DWKSNITSEFKMDKKVLGNIDPKE-------IINFHYLDSKLKNYLCILSSDGRFKKVLF 628

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            + +  +       KL +   I+      ++  +++ T +G+  +F +S 
Sbjct: 629 DEDMIKSNRIFSITKLKNSTSIIDSFILNKQQQLVILTSIGRLFKFDLSD 678


>gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
 gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21]
          Length = 761

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 255/805 (31%), Positives = 405/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 RERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
 gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2]
          Length = 761

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/805 (31%), Positives = 405/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHSLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   +         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGSSITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
 gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1]
          Length = 748

 Score =  555 bits (1431), Expect = e-155,   Method: Composition-based stats.
 Identities = 241/740 (32%), Positives = 364/740 (49%), Gaps = 61/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPP---SDGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFR +Y+G  +EP+VL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG +++     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L+S   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A     
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 413 ------------------------LMARFELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLD---MEDE 530
           +L  E +    +L+S       I +++ +VK           RRT +             
Sbjct: 449 ALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGRRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      SGV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVADLSGVTFKGDDTLKVAFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G     G  +  ++ L+ G  I   +P            ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGGRGF--GDPVRLMVDLDDGTEIVAALP------YKPESKLLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
               G          +   R GK  + LD     +      + + + + +     + FP 
Sbjct: 613 GGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVL-LVPAEGDHVAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           S +    GR   GVR     
Sbjct: 672 SEVTEL-GRG-KGVRLQRCR 689


>gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
 gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3]
          Length = 774

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/813 (30%), Positives = 379/813 (46%), Gaps = 77/813 (9%)

Query: 1   MTEHII-----SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +             ++  +   ++ D  + +YL YA++V+ GRA+PD+ DG KPV RR
Sbjct: 1   MDDKTPDFFDEPPSPPDDGNVL--TLGDYAERAYLDYAVSVVKGRALPDVCDGQKPVQRR 58

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQG
Sbjct: 59  ILYAMNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQG 118

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP +L AR P  L
Sbjct: 119 NFGSRDGDGAAAMRYTEARLTPIAQLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFAL 178

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM+++ GPDFP G  I+   
Sbjct: 179 LNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHADLMQLVPGPDFPGGGQIISSD 238

Query: 236 -GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I  AY  GRGS+ +R    IE+ +  + Q+VV E+P   +   +LE+I EL   K   
Sbjct: 239 AEISAAYEVGRGSLKVRARWKIEELARGQWQLVVNELPPNTSCQKVLEEIEELTNPKIKA 298

Query: 295 DIADLRDESDRQ-------------------GYRVVIELKRGA-SADVILNQLYRYTSLQ 334
               L  E                         R+V E K  A   +  +  L  +TSL+
Sbjct: 299 GKKTLTQEQANTKKTLLDLLDAVRDESGKDAPVRLVFEPKSRALDQNEFVQSLLAHTSLE 358

Query: 335 SLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S   +N+V + N  +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I 
Sbjct: 359 SNAPLNLVMIGNDGRPAQKGLGAILGEWVGFRQLTVTRRCRHRLGKVDDRIHILEGRMIV 418

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             N+DEV+RIIR S  P+ A                                   LSE Q
Sbjct: 419 FLNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQ 449

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              ILE+RL +L  L +  I  EL  L  E  +  D+L++ S +  ++ +E+     +  
Sbjct: 450 AEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEDLLANESAMKRLLIKEIEGDARQFG 509

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRT +++       E  ++ E + V VS  G+V        RA +  G   +    + 
Sbjct: 510 DDRRT-LIQQEKRATFEARVIDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKA 560

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +   F   T  +++ + S G V+   V  LP G     G  + +++ L  G  +   
Sbjct: 561 GDGLYAAFQCRTPDTLIAWGSKGRVHSVPVQVLPGGRGD--GVPVTSLIELESGTHLMHY 618

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ- 692
                ++       ++ A+ +G     K+ D I   ++GK  M +D     L+       
Sbjct: 619 FAAGAEQP------LLLASSNGFGFIAKVGDMISRQKTGKAFMTIDEGAVPLAPMPVMPL 672

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
              +   +  G+ + F +  ++  +     GV  ++L   + ++    +           
Sbjct: 673 ATQVACLSAQGRLLVFGLDEMKTLSA-GGRGVILMALEDKEALVQALAIDGRGVVLQGTG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              K         +         +   + +  +
Sbjct: 732 RGGKAQEVVLAGAALAPLVGKRARKGRAPDLKL 764


>gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C]
          Length = 749

 Score =  555 bits (1430), Expect = e-155,   Method: Composition-based stats.
 Identities = 231/747 (30%), Positives = 367/747 (49%), Gaps = 60/747 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +S+R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSA 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG + +  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L   K     +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NL+EV++IIR    P+       
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKK------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  +IL +RL  L  L    +R E +
Sbjct: 413 -----------------------ELILRFKLTENQAESILNMRLRSLRKLEEFQLRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           SL IE ++   +L+S  +   +I +E+  V+           RRT          +   +
Sbjct: 450 SLKIEKEKLQSLLNSNIKQWKVIAEEITRVRKIFGPETFLGKRRTTFEDAPRHDENDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G+V        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWV--------RALKGHLNDYKTLSFKEGDGLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G        ++  ++         +               + 
Sbjct: 562 VISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGKR--------LL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN      +D I   R GK  M + S D +       + + I +  +  + + F I
Sbjct: 614 ISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLC-IPVEGDYIAIVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             I   +     GVR      G  V +
Sbjct: 673 EQIPEMS--RGKGVRLQRYKDGGIVDA 697



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           L +S  G G   S  D   + R GK +          + +L    PV + D I +V +  
Sbjct: 612 LLISSYGNGFIVSETDIIANTRKGKQVMNVK-----SLDSLKLCIPV-EGDYIAIVGENR 665

Query: 861 TLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            ++   + +I   SR  KGV +        V
Sbjct: 666 KMLIFSIEQIPEMSR-GKGVRLQRYKDGGIV 695


>gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4]
          Length = 761

 Score =  555 bits (1429), Expect = e-155,   Method: Composition-based stats.
 Identities = 246/732 (33%), Positives = 388/732 (53%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDLQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001]
 gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001]
          Length = 748

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 242/740 (32%), Positives = 365/740 (49%), Gaps = 61/740 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + ++        GI SV +   ++  Y  YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGQPVLPPPG---DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    + KCA+I G+VMG +HPHG+ AIYDAL R++QD++ R  L++GQGNFG++
Sbjct: 58  RLLRLDPTSAFKKCAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNI 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE RL + A  LLD + +DTVDFRP+Y+G  +EPVVL A +PN+L NG  
Sbjct: 118 DGDGPAAYRYTEARLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQ 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I N +   + L   ++GPDFPTG +++     I+ 
Sbjct: 178 GIAVGMATSIPPHNAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIRE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG   +R     E        IVVTEIPY V KA ++EK+A+L++EK++  +AD+
Sbjct: 238 AYRTGRGGFRVRARWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADV 297

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGIL 358
           RDES      V+    R     +++  L+R + L++   +N+  L G   P    L   L
Sbjct: 298 RDESAEDVRVVLEPRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECL 357

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + +V  R  V+ RR+ Y L +   R  +L GL I   +LDEV+RIIR    P+ A     
Sbjct: 358 REWVDHRRVVLQRRSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAA----- 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+EVQ  AIL+ RL  L  L   +++ E  
Sbjct: 413 ------------------------LMARFELTEVQANAILDTRLRSLRKLEEMELKREFE 448

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDE 530
           +L  E +    +L S       I +++ +VK           RRT +             
Sbjct: 449 ALTQEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPETKLGKRRTTLENPPDTAGIDFTA 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G++        RA +      SGV  + +D +   F+  T   +L
Sbjct: 509 AMVEREPITVILSEKGWI--------RALKGHVADLSGVTFKGDDTLKVSFLSETTAKIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G V+  +  +LP G     G  +  ++ L+ G  I   +P            ++ 
Sbjct: 561 LLASNGKVFTIEASKLPGGRGF--GDPVRLMVDLDDGTEIVAALP------YKPESKLLV 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           A   G          +   R GK  + LD      ++    + + I + +     + FP 
Sbjct: 613 AGSDGRGFIAPSDALVANTRKGKAILGLDEGTSA-TLLVPAEGDHIAVCSSDKLMLVFPA 671

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           S +   +     GVR     
Sbjct: 672 SEVTELS--RGKGVRLQRCR 689


>gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW]
 gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum
           SW]
          Length = 757

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 247/752 (32%), Positives = 375/752 (49%), Gaps = 76/752 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  I         I    + + +   YL+YA++ I+ R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDAAI--------EILDKRLAEALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ +E      K AR+ G+V+GK+HPHG+ ++YDAL R+AQ+++ R  L+EGQGNFG++
Sbjct: 53  SQLRLEPTTPPKKSARVVGDVIGKFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNI 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  +L  + +D  DFRP YDG  +EP+VL A +PN+L NG  
Sbjct: 113 DGDNAAAMRYTEARLTEVAKAMLAGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSA 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCV---------AVIDNPDIDLDALMEIIRGPDFPTGAV- 230
           GIAVGMATNIP HN+GE+              A      + ++ L+  I GPDFPTG V 
Sbjct: 173 GIAVGMATNIPPHNVGEICGALNLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVL 232

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           +  R  I  AY TGRG+   R     E  +    QI+VT+IPYQV K+ ++EKIAEL+ E
Sbjct: 233 VESRENILEAYRTGRGAFRTRARWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAE 292

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-- 348
           K++  + D+RDES      V++   R    DV++ Q++R T L++ FS+NM  L+  +  
Sbjct: 293 KKLPLLEDVRDESAEDIRLVLVPKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGG 352

Query: 349 --PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
             P   TL  +L+AF+  R+EV++RR+++ L +   R  VL G  IA  N+DEV+RIIR 
Sbjct: 353 LVPRVMTLYEVLRAFLEHRQEVLLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIRE 412

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
              P   +RELM R                            L++VQ  AIL +RL  L 
Sbjct: 413 EDEP---KRELMAR--------------------------FSLTDVQAEAILNMRLRSLR 443

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV 521
            L   +IR E ++L  E    + +L    +    I +E+  +  +         RRT I 
Sbjct: 444 KLEEFEIRKENDALTKERGVLVGLLEDGHKRWKAISKEVAEMDRKFGRTTALGERRTLIG 503

Query: 522 EGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           E   D  +  E  I RE + V +S  G+++ V         +  +  +G   +D D    
Sbjct: 504 EPPKDLAVPAEAMIEREPVTVFLSEKGWIRTVR------GHQSAQEVAGTKYKDGDRERF 557

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   +L F+  G  Y   V RLP G     G+ +  ++ L + E           
Sbjct: 558 VLHAETTDRLLLFAGSGKFYTLGVDRLPGGRGF--GEPVRLMVDLGEAE-------IVAL 608

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                   +V A+  G   + +  D +   R+GK  +        +      + + + + 
Sbjct: 609 LRHQPGQRLVVASADGRGFQVEADDVVAQTRAGKQVLTPADGAAAVLA-VPAEGDAVAVI 667

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
               + + F +  + V       GV+      
Sbjct: 668 GNNRKLLVFKLEELPVMT--RGKGVQLQKYKD 697



 Score = 41.7 bits (96), Expect = 0.61,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 13/177 (7%)

Query: 713 IRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           IR   G +++  V G     GD+      VLHA+      +           +       
Sbjct: 532 IRTVRGHQSAQEVAGTKYKDGDR---ERFVLHAETTDRLLLFAGSGKFYTLGVDRLPGGR 588

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                    V+   +E          Q ++  S  G G +  + D     R+GK +    
Sbjct: 589 GFGEPVRLMVDLGEAEIVALLRHQPGQRLVVASADGRGFQVEADDVVAQTRAGKQVLT-- 646

Query: 832 VSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
                      AV  V  + D + ++ +   L+   + E+ + +R  KGV +     
Sbjct: 647 -----PADGAAAVLAVPAEGDAVAVIGNNRKLLVFKLEELPVMTR-GKGVQLQKYKD 697


>gi|284931407|gb|ADC31345.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str. F]
          Length = 796

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 393/741 (53%), Gaps = 48/741 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQTWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL    + +L+++ K+TV+F  N+D S  EP +L +  PN+LVNG  GIA G ATNIP
Sbjct: 122 EARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  ID+P+  L+++++++ GPDFPTG +IL   GIKNAY TG+G IVIR
Sbjct: 182 PFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E      +Q+VVT+IP++ NKA+++  I E++   ++  + ++RDESDR G RVV
Sbjct: 242 AKIVNEN-----DQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVV 296

Query: 312 IELKRGASA--DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++           I N LY+YT LQ  +S N V ++  KP + ++   L +++     ++
Sbjct: 297 LQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTIL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                + L K + R  V+ GL  A + +D+++ II+ S + + A   L+ +         
Sbjct: 357 RNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINK--------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S +Q  AI+ LRL RLT      ++ E  SL   IK+   
Sbjct: 408 -----------------YQFSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           +L  ++ L   +K+ L S K   +T RR+ I   +    + +   I ++++ +  S  G 
Sbjct: 451 LLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYLVSSVDGL 510

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +     +         + + ++ +D+++DL  VS+   V F ++ G V      ++ 
Sbjct: 511 IKTIAYDQNKQLNP-----TSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIK 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              P+  G  +  + ++   E+I  ++   +      N  +V  +K+G +++  ++D + 
Sbjct: 566 QAKPREIGMDINELTTIKDNEKIVKLVELSD-----QNDRIVLVSKYGMIKQISVNDLVN 620

Query: 668 IN-RSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           I        M L   DE++          ++++ TK    +RF I+ +    G  S+GVR
Sbjct: 621 IKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVN-LTGLKSMGVR 679

Query: 726 GISLAKGDQVISMAIVLHADA 746
            I L   D+VI    + ++  
Sbjct: 680 AIKLKTNDEVIGFDQIKNSID 700



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 68/181 (37%), Gaps = 18/181 (9%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNIS 786
            + + D +  +  V   +            +    ++      EI    N+ ++++ N  
Sbjct: 528 KIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEK 587

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI------NEIGA 840
             +  EL  +   I+ VS+ G  K+ S  D          +     +K        +   
Sbjct: 588 IVKLVELSDQNDRIVLVSKYGMIKQISVND----------LVNIKSTKPTTCMSLKDDDE 637

Query: 841 LVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           LV    ++D N ++I+++     +R  +NE+ +    + GV       ++ V+  ++I+ 
Sbjct: 638 LVCANLISDPNAELIIITKNAYALRFFINEVNLTGLKSMGVRAIKLKTNDEVIGFDQIKN 697

Query: 900 S 900
           S
Sbjct: 698 S 698



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 82/254 (32%), Gaps = 20/254 (7%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
            +   E          + ++  G ++      + Q  +    ++K+   D +  +   + 
Sbjct: 487 KLVINEASIIEKKELYLVSSVDGLIK---TIAYDQNKQLNPTSLKIKQDDYLSDLIKVSS 543

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI------SLAKGDQVISMAIVLHADA 746
            N +   T  G  V      I+    R      G+      ++   ++++ +  +   + 
Sbjct: 544 LNKVAFITNYGNVVVINAHKIKQAKPRE----IGMDINELTTIKDNEKIVKLVELSDQND 599

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                  Y          +        +       +  +           E  I  +++ 
Sbjct: 600 RIVLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELII--ITKN 657

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRV 865
            +  R    +  ++     G+RA  +        ++    + ++ DQ++LV +K  + ++
Sbjct: 658 AYALRFFINEVNLTGLKSMGVRAIKLKT---NDEVIGFDQIKNSIDQLVLVKNK-QIKKL 713

Query: 866 PVNEIRIASRATKG 879
             + I   SRAT+G
Sbjct: 714 KASLIENQSRATQG 727



 Score = 38.2 bits (87), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 828 RATDVSK---INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNE-IRIASRATKGVVI 882
              D+++   I +   +V +  ++D ND+I+LVS  G + ++ VN+ + I  ++TK    
Sbjct: 572 IGMDINELTTIKDNEKIVKLVELSDQNDRIVLVSKYGMIKQISVNDLVNI--KSTKPTTC 629

Query: 883 FSTAKDERVVSVERIRESEIV 903
            S   D+ +V    I +    
Sbjct: 630 MSLKDDDELVCANLISDPNAE 650


>gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
 gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52]
          Length = 761

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/805 (31%), Positives = 406/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     D D+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DKDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
 gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334]
          Length = 751

 Score =  554 bits (1428), Expect = e-155,   Method: Composition-based stats.
 Identities = 228/762 (29%), Positives = 374/762 (49%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT A I+     I
Sbjct: 176 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 236 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 351 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 408 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 442 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 502 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 554 DSAGKSYALPAHTLPSARGLGD--------PLTSRLKPASGAHFVGVLMGADDDLFLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 606 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 665

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 666 AELPELP--KGKGNKIIQIAPARVANREEYCVALAVLHEKSS 705



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A           +  
Sbjct: 518 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGD 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 576 PLTSRLKPASGAHFVGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 630

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I         +
Sbjct: 631 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKIIQ-------I 682

Query: 893 SVERIRESEI 902
           +  R+   E 
Sbjct: 683 APARVANREE 692


>gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N]
 gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N]
          Length = 772

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/733 (34%), Positives = 356/733 (48%), Gaps = 70/733 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M  MG+    K VK AR+ G+V+GKY
Sbjct: 29  EQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARVVGDVLGKY 88

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   A  LL++
Sbjct: 89  HPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTPIARLLLEE 148

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS QEP +L AR P +L+NG  GIAVGMAT IP+HNL EV   CVA+
Sbjct: 149 LDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACVAL 208

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP +  + L+ +I GPDF  G  I+     I + YATGRGS+  R     E+ +  + 
Sbjct: 209 IRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQFEEMARGQW 268

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREK---------------RIVDIADLRDESDRQGYR 309
           Q+VV E+P   +   +LE+I EL   K               + + +A L    D  G  
Sbjct: 269 QLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDAVRDESGKD 328

Query: 310 VVIEL-----KRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVA 363
             + L           D  +N L   TS++    VN+V +    +P +  L  +L  ++A
Sbjct: 329 AAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLRSVLDEWLA 388

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR E VVRRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P+ A          
Sbjct: 389 FRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPA---------- 438

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q   ILE+RL +L  L    I  EL     E
Sbjct: 439 -------------------LMDRFALTERQAEDILEMRLRQLARLEGFKIEQELADKREE 479

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                D+L +   L  ++ +E+ +   +    RRT I         E  ++ E + V VS
Sbjct: 480 QSRLQDLLDNPGSLKRLLIKEIEADAKQHGDERRTLIE-SAERAVLETKVLDEPVTVVVS 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA++  G   +    +  D +   F   T  S++     G VY   V
Sbjct: 539 RNGWL--------RARQGHGHDAAQFTFKQGDDLYGAFECRTTDSLIAVGDNGRVYTVAV 590

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP       G+ +  ++ L  G RI   +    D         + AT+       +LS
Sbjct: 591 SALPSARGD--GQPVTTMIDLEAGTRIVHTIAAAADSRW------LLATQSAYGFATRLS 642

Query: 664 DFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D     R+GK  + LD  D +L  V        + L +   + + F +  ++  +G    
Sbjct: 643 DMSSRQRAGKQFVTLDKGDVLLRPVPLFEGAVQLALLSSKAKLLVFGLDELKSLSG-GGR 701

Query: 723 GVRGISLAKGDQV 735
           G   + L   D++
Sbjct: 702 GTILMGLDANDRL 714


>gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
 gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177']
          Length = 751

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/762 (29%), Positives = 373/762 (48%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT   +I     I
Sbjct: 176 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 236 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 351 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 408 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 442 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 502 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 554 DSAGKSYALPAHTLPSARGLGD--------PLTSRLKPASGAHFVGILMGADDDLFLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 606 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 665

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 666 AELPELP--KGKGNKIIQIAPARVANREEYCVALAVLHEKSS 705



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A           +  
Sbjct: 518 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGD 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 576 PLTSRLKPASGAHFVGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 630

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I         +
Sbjct: 631 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKIIQ-------I 682

Query: 893 SVERIRESEI 902
           +  R+   E 
Sbjct: 683 APARVANREE 692


>gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
 gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50]
          Length = 771

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 251/760 (33%), Positives = 365/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++       D        ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQAMGLAAGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I NP +  + L+ ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------ 291
              YATGRGS+  R     E+ +  + Q+VVTE+P   +   +LE+I E+   K      
Sbjct: 241 AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKK 300

Query: 292 ---------RIVDIADLRDESDRQGYRVVIEL-----KRGASADVILNQLYRYTSLQSLF 337
                    + V ++ L    D  G    + L           D  +N L   TS++S  
Sbjct: 301 SLSAEQQQAKAVMLSLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNV 360

Query: 338 SVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P + +L  +L+ +VAFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR +  P  A                                   L+E Q   
Sbjct: 421 VDEVIQTIREAEEPRAA-----------------------------LMARFGLTERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     D+L +   L  ++ +E+     +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLDNPGSLKRLLIKEIEGDAKQYGDDR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I         E  +V E + V VS  G++        RA++  G        +  D 
Sbjct: 512 RTLIE-TAERAVLETKVVDEPVTVIVSQKGWL--------RARQGHGHDAGQFSFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP       G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGD--GQPVTTMIDLEAGTRIVHTIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
                       + AT+ G     +LSD     R+GK  + L+  DE+L  V        
Sbjct: 621 APGSRW------LLATRRGFGFAARLSDMSSRQRAGKQFITLEQGDELLRPVPLFEGATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + L +  G+ + F +  ++  +G    G   + L   D++
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSG-GGRGTILMGLDTADKL 713


>gi|294660439|ref|NP_853201.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812099|gb|AAP56769.2| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930683|gb|ADC30622.1| DNA topoisomerase IV subunit A [Mycoplasma gallisepticum str.
           R(high)]
          Length = 796

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 393/741 (53%), Gaps = 48/741 (6%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL    + +L+++ K+TV+F  N+D S  EP +L +  PN+LVNG  GIA G ATNIP
Sbjct: 122 EARLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             NL E++D  +  ID+P+  L+++++++ GPDFPTG +IL   GIKNAY TG+G IVIR
Sbjct: 182 PFNLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGGIILDDDGIKNAYLTGKGKIVIR 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                E      +Q+VVT+IP++ NKA+++  I E++   ++  + ++RDESDR G RVV
Sbjct: 242 AKIVNEN-----DQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVV 296

Query: 312 IELKRGASA--DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++           I N LY+YT LQ  +S N V ++  KP + ++   L +++     ++
Sbjct: 297 LQTNTKDEKVLATIKNYLYKYTQLQINYSFNNVVIDQKKPIQMSIFNYLDSYLNHAYTIL 356

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                + L K + R  V+ GL  A + +D+++ II+ S + + A   L+ +         
Sbjct: 357 RNAISFDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINK--------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               S +Q  AI+ LRL RLT      ++ E  SL   IK+   
Sbjct: 408 -----------------YQFSAIQAEAIVSLRLYRLTNTDILALKEEKKSLDTNIKQYQL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGY 547
           +L  ++ L   +K+ L S K   +T RR+ I   +    + +   I ++++ +  S  G 
Sbjct: 451 LLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASIIEKKELYLVSSVDGL 510

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +     +         + + ++ +D+++DL  VS+   V F ++ G V      ++ 
Sbjct: 511 IKTIAYDQNKQLNP-----TSLKIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIK 565

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
              P+  G  +  + ++   E+I  ++   +      N  +V  +K+G +++  ++D + 
Sbjct: 566 QAKPREIGMDINELTTIKDNEKIVKLVELSD-----QNDRIVLVSKYGMIKQISVNDLVN 620

Query: 668 IN-RSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           I        M L   DE++          ++++ TK    +RF I+ +    G  S+GVR
Sbjct: 621 IKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEVN-LTGLKSMGVR 679

Query: 726 GISLAKGDQVISMAIVLHADA 746
            I L   DQVI    + ++  
Sbjct: 680 AIKLKTNDQVIGFDQIKNSID 700



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 69/181 (38%), Gaps = 18/181 (9%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND-SSVEGNIS 786
            + + D +  +  V   +            +    ++      EI    N+ ++++ N  
Sbjct: 528 KIKQDDYLSDLIKVSSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEK 587

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI------NEIGA 840
             +  EL  +   I+ VS+ G  K+ S  D          +     +K        +   
Sbjct: 588 IVKLVELSDQNDRIVLVSKYGMIKQISVND----------LVNIKSTKPTTCMSLKDDDE 637

Query: 841 LVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           LV    ++D N ++I+++     +R  +NE+ +    + GV       +++V+  ++I+ 
Sbjct: 638 LVCANLISDPNAELIIITKNAYALRFFINEVNLTGLKSMGVRAIKLKTNDQVIGFDQIKN 697

Query: 900 S 900
           S
Sbjct: 698 S 698



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 82/254 (32%), Gaps = 20/254 (7%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
            +   E          + ++  G ++      + Q  +    ++K+   D +  +   + 
Sbjct: 487 KLVINEASIIEKKELYLVSSVDGLIK---TIAYDQNKQLNPTSLKIKQDDYLSDLIKVSS 543

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI------SLAKGDQVISMAIVLHADA 746
            N +   T  G  V      I+    R      G+      ++   ++++ +  +   + 
Sbjct: 544 LNKVAFITNYGNVVVINAHKIKQAKPRE----IGMDINELTTIKDNEKIVKLVELSDQND 599

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                  Y          +        +       +  +           E  I  +++ 
Sbjct: 600 RIVLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELII--ITKN 657

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQIILVSDKGTLIRV 865
            +  R    +  ++     G+RA  +        ++    + ++ DQ++LV +K  + ++
Sbjct: 658 AYALRFFINEVNLTGLKSMGVRAIKLKT---NDQVIGFDQIKNSIDQLVLVKNK-QIKKL 713

Query: 866 PVNEIRIASRATKG 879
            V+ I   SRA +G
Sbjct: 714 KVSLIENQSRANQG 727



 Score = 38.2 bits (87), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 7/81 (8%)

Query: 828 RATDVSK---INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNE-IRIASRATKGVVI 882
              D+++   I +   +V +  ++D ND+I+LVS  G + ++ VN+ + I  ++TK    
Sbjct: 572 IGMDINELTTIKDNEKIVKLVELSDQNDRIVLVSKYGMIKQISVNDLVNI--KSTKPTTC 629

Query: 883 FSTAKDERVVSVERIRESEIV 903
            S   D+ +V    I +    
Sbjct: 630 MSLKDDDELVCANLISDPNAE 650


>gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15]
          Length = 769

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/757 (33%), Positives = 375/757 (49%), Gaps = 70/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP 
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIA
Sbjct: 120 SFAAMRYTESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HN+ EV   C+ ++D P+  +D L E I+GPDFPT   +I  R  I+  Y 
Sbjct: 180 VGMATDIPPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R     E        IVVT++P+QV+   +LE+IA  ++ K++  +ADLRDE
Sbjct: 240 TGRGSLRMRARWIRESGE-----IVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           SD +   R+VI  +      D ++  L+  T L+  + VN+  + N  +P    L  IL 
Sbjct: 295 SDHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V+RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM 
Sbjct: 355 EWLTFRRTTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKP---KAELMA 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS  Q  AILEL+L  L  L    IR E + 
Sbjct: 412 R--------------------------FGLSADQAEAILELKLRHLAKLEEMKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  E  E   IL S  RL  +IK E+ +  +     RR+ IVE        + D I  + 
Sbjct: 446 LAAERDELQSILGSEDRLRELIKSEMQADAETFGDDRRSPIVEREEAKAFSEVDLISNDP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +       G+  +  D  +       +   +F  S G 
Sbjct: 506 VTVVLSEKGWV--------RAAKGHDIEPEGLSYKAGDRFSLAARGRNNQQTIFLDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y       P    Q           L       +   F        +   +  T  G  
Sbjct: 558 AYSLMAHSFPSARGQGE--------PLTGRINPPSGASFSGLLMGDPSRKALLVTDGGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIR 714
               L+D I  NR+GK  + +     I+   T         +   +  G+ + FP+S + 
Sbjct: 610 FVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKTLYLGAVSNEGRMLVFPLSELP 669

Query: 715 VFAGRNSVGVRGISL------AKGDQVISMAIVLHAD 745
             A     G + IS+      ++ + V+++A+    D
Sbjct: 670 ELA--KGKGNKIISIPSARVQSREEYVVAVAVFAEDD 704



 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 39/125 (31%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII------ 854
           L V++ G+G  TS  D    NR+GK                 AV  V    +I+      
Sbjct: 601 LLVTDGGYGFVTSLNDMISKNRNGK-----------------AVVSVPKGARIMPPLTIP 643

Query: 855 ---------LVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRE 899
                     VS++G ++  P++E+   ++  KG  I S       +++E VV+V    E
Sbjct: 644 TTEKTLYLGAVSNEGRMLVFPLSELPELAK-GKGNKIISIPSARVQSREEYVVAVAVFAE 702

Query: 900 SEIVD 904
            + ++
Sbjct: 703 DDQLE 707


>gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
 gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96]
          Length = 743

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/748 (33%), Positives = 380/748 (50%), Gaps = 68/748 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +     + + D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    K+ 
Sbjct: 4   QGNFEQLPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAKFK 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQD+S R  L++GQGN+GS D DP   AA RY
Sbjct: 64  KSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL +LG+ TVD+  N+D + +EPV+L AR PN+L+NG  GIAVGMAT+I
Sbjct: 123 TESRLTAYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV + C+ ++D+P+  LD L   I+GPD+PT   +I     I+  Y +G GSI 
Sbjct: 183 PPHNLREVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSIK 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY- 308
           +R     E  +     IV+T +P+QV+ A +LE+IA  +  K++  I DLRDESD +   
Sbjct: 243 MRAKYEQEDGN-----IVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENPT 297

Query: 309 -RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
             +VI   +   AD +++ L+  T L+  + VNM  +    +P+   L  IL  ++AFR 
Sbjct: 298 RLLVIPRSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDGRPKVKGLRDILVEWLAFRT 357

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V +R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM+R      
Sbjct: 358 ETVRKRLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHP---KPVLMER------ 408

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 ++++QT AILEL+L  L  L    IR E + L +E   
Sbjct: 409 --------------------FGITDIQTEAILELKLRHLAKLEEMKIRGEQDELELERAA 448

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSH 544
               L S   L  +I++EL    ++    RR+ IV        E    I  E + V +S 
Sbjct: 449 LEKTLGSPRLLNRLIRKELERDAEKYGDDRRSPIVARDAAQALETTALITNEPLTVILSE 508

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +      + +  R  D   D     T   V    S G  Y     
Sbjct: 509 KGWI--------RAAKGHDIDVASLNYRSGDGFLDAVKCRTTQPVYILDSTGRAYSTATH 560

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    + +G+ L   L+   G     ++    D+        V A+  G   R +L +
Sbjct: 561 DLPSA--RTQGEPLTGRLNPPPGSLFLHLLAGQPDDWY------VLASHFGYGFRVQLKE 612

Query: 665 FIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +  N++GK+ + L    ++L      ++ + + + T  G+ + FP++ +   A     G
Sbjct: 613 LLSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTLQGRLLIFPVAELPALA--KGKG 670

Query: 724 VRGISL------AKGDQVISMAIVLHAD 745
            + I +      A  D VI+   +    
Sbjct: 671 NKLIQIPTADLTAGKDYVIAAVALPENG 698



 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 19/193 (9%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V  ++   GD    +  V          +       +              
Sbjct: 513 RAAKGHDIDVASLNYRSGDGF--LDAVKCRTTQPVYILDSTGRAYSTATHDLPSARTQGE 570

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      S          + + +  S  G+G R    +    N++GK +       
Sbjct: 571 PLTGRLNPPPGSLFLHLLAGQPDDWYVLASHFGYGFRVQLKELLSKNKAGKLLITL---- 626

Query: 835 INEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS------TAK 887
             +   ++   P+ ++ D + +V+ +G L+  PV E+   ++  KG  +        TA 
Sbjct: 627 -PDGAKVLKPTPIRSEADSLAVVTLQGRLLIFPVAELPALAK-GKGNKLIQIPTADLTAG 684

Query: 888 DERVVSVERIRES 900
            + V++   + E+
Sbjct: 685 KDYVIAAVALPEN 697


>gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804]
 gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii]
          Length = 771

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/761 (33%), Positives = 365/761 (47%), Gaps = 72/761 (9%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT+       D    +   ++++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MTDSNQPGLFDAAAGEADEAITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+G GNFG
Sbjct: 61  AMQDMGLGPGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD+L + TVDF PNYDGS QEP +L AR P +L+NG
Sbjct: 121 SRDGDNAAAMRYTEARLTPFSRLLLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGI 237
             GIAVGMAT IP+HNL EV   CVA+I  P +  + L  ++ GPDF  G  I+     I
Sbjct: 181 ASGIAVGMATEIPSHNLREVAQACVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YA GRGS+  R     E+ +  + Q+VV E+P   +   +LE+I E+   K      
Sbjct: 241 AQIYAGGRGSLKARARWRFEEMARGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKK 300

Query: 298 D------------------LRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLF 337
                              +RDES +    R+V E K      D  +N L   TS++S  
Sbjct: 301 SLTTDQQQAKAVMLNLLDAVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSV 360

Query: 338 SVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
            VN+V +    +P +  L  IL  ++AFR + VVRRT++ L+K  DR HVL G  +   N
Sbjct: 361 PVNLVCIGTDGRPRQKGLRDILTEWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV++ IR S  P+ A                                   LSE Q   
Sbjct: 421 VDEVIQTIRESDEPKAA-----------------------------LMQRFQLSERQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L    I  EL     E     ++L + + L  ++ +E+ +   +    R
Sbjct: 452 ILEMRLRQLARLEGIKIEQELADKREEQSRLQELLDNPASLKRLLVKEIEADAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I         E  +V E + V VS  G++        RA++  G   +    +  D 
Sbjct: 512 RTLIE-TAERAVLETKVVDEPVTVIVSQKGWL--------RARQGHGHDAAQFGFKQGDD 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++     G VY   V  LP       G+ +  ++ L  G RI   +  
Sbjct: 563 LYGAFECRTTDTLIAVGDNGRVYSVAVAGLPSARGD--GQPVTTMIDLAPGTRIVHSIAA 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             D         + AT+ G     +L D +   R GK  + L++ D +L  V        
Sbjct: 621 SPDSRW------LLATQRGFGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDGARQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           + L +  G+ + F +  ++  +     G   I L   D++ 
Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSA-GGRGTILIGLDAADKLA 714


>gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331]
 gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331]
          Length = 751

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/762 (29%), Positives = 373/762 (48%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT   +I     I
Sbjct: 176 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 236 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 351 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 408 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 442 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 502 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 554 DSAGKSYALPAHILPSARGLGD--------PLTSRLKPASGAHFVGVLMGADDDLFLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 606 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 665

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 666 AELPELP--KGKGNKIIQIAPARVANREEYCVALAVLHEKSS 705



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A    I      +  
Sbjct: 518 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGD 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 576 PLTSRLKPASGAHFVGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 630

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I         +
Sbjct: 631 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKIIQ-------I 682

Query: 893 SVERIRESEI 902
           +  R+   E 
Sbjct: 683 APARVANREE 692


>gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586]
 gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586]
          Length = 761

 Score =  554 bits (1427), Expect = e-155,   Method: Composition-based stats.
 Identities = 244/732 (33%), Positives = 388/732 (53%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         +    +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSSQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     D D+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DKDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
 gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111]
          Length = 753

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/762 (29%), Positives = 373/762 (48%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 119 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT   +I     I
Sbjct: 178 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEI 237

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 238 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 292

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 293 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 352

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 353 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 410 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 443

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 444 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 503

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 504 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 555

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 556 DSAGKSYALPAHTLPSARGLGD--------PLTSRLKPASGAHFVGVLMGADDDLFLLAS 607

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 608 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 667

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 668 AELPELP--KGKGNKIIQIAPARVANREEYCVALAVLHEKSS 707



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A           +  
Sbjct: 520 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGD 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 578 PLTSRLKPASGAHFVGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 632

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I         +
Sbjct: 633 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKIIQ-------I 684

Query: 893 SVERIRESEI 902
           +  R+   E 
Sbjct: 685 APARVANREE 694


>gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
 gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154]
          Length = 753

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/762 (29%), Positives = 373/762 (48%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 119 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT   +I     I
Sbjct: 178 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEI 237

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 238 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 292

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 293 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 352

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 353 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 410 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 443

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 444 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 503

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 504 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 555

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 556 DSAGKSYALPAHTLPSARGLGD--------PLTSRLKPASGAHFVGILMGADDDLFLLAS 607

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 608 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 667

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 668 AELPELP--KGKGNKIIQIAPARVANREEYCVALAVLHEKSS 707



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A           +  
Sbjct: 520 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGD 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 578 PLTSRLKPASGAHFVGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 632

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I         +
Sbjct: 633 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKIIQ-------I 684

Query: 893 SVERIRESEI 902
           +  R+   E 
Sbjct: 685 APARVANREE 694


>gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493]
 gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493]
          Length = 753

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/762 (29%), Positives = 373/762 (48%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 119 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT   +I     I
Sbjct: 178 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEI 237

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 238 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 292

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 293 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 352

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 353 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 410 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 443

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 444 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 503

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 504 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 555

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 556 DSAGKSYALPAHILPSARGLGD--------PLTSRLKPASGAHFVGVLMGADDDLFLLAS 607

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 608 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 667

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 668 AELPELP--KGKGNKIIQIAPARVANREEYCVALAVLHEKSS 707



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 21/190 (11%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A    I      +  
Sbjct: 520 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGD 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 578 PLTSRLKPASGAHFVGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 632

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I         +
Sbjct: 633 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKIIQ-------I 684

Query: 893 SVERIRESEI 902
           +  R+   E 
Sbjct: 685 APARVANREE 694


>gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
 gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212]
          Length = 753

 Score =  554 bits (1426), Expect = e-155,   Method: Composition-based stats.
 Identities = 227/762 (29%), Positives = 373/762 (48%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+            +    +++ ++ +YL Y+++VIL RA+P + DGLKPV RRI++ M
Sbjct: 3   MTKSTTP----NALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSA 118

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+ PN+DG+ +EP +L AR PNVL+NG
Sbjct: 119 D-DPKSFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNG 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV D C+ ++++P+  L  +M+ I+GPD+PT   +I     I
Sbjct: 178 TSGIAVGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEI 237

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GS+ +R     E        IV+T +P+QV+   ++E+IA  +  K++  ++
Sbjct: 238 RTLYRTGQGSLRMRATYQKENGE-----IVITALPHQVSGNRVMEQIAAQMVAKKLPAVS 292

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           D+RDESD +   R+VI  +    +   ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 293 DIRDESDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDL 352

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I +LK ++ FR + V +R +Y L    +R H+L G  IA  NLD ++ IIR    P+   
Sbjct: 353 ISLLKEWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPK--- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILE++L +L  L    IR
Sbjct: 410 --------------------------PVLMKKFKLSDRQAEAILEIKLRQLAKLEEKKIR 443

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
           +E   L  E  E    L+S+++L  +I+ EL + K++    R + ++E      + +E+ 
Sbjct: 444 DEQAILTKERDEIEKTLASKTKLKKLIRGELAADKEKYGDKRCSPLMERPIAKMIREEEM 503

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +        +  R  D         T+   +F 
Sbjct: 504 VPSEPVTVVLSKKGWI--------RAAKGHEVEGETLNYRSGDEFLMQAQGRTNELAVFL 555

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP                L    +  +   F       ++   + A+
Sbjct: 556 DSAGKSYALPAHILPSARGLGD--------PLTSRLKPASGAHFVGVLMGADDDLFLLAS 607

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G      L +    NRSGK  +KL    +++  +     +   +   T  G+ + FPI
Sbjct: 608 DAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPI 667

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +         G + I +A        +  +++A++    +
Sbjct: 668 AELPELP--KGKGNKIIQIAPSRVANREEYCVALAVLHEKSS 707



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD+   +        +    +       A    I      +  
Sbjct: 520 RAAKGHEVEGETLNYRSGDEF--LMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGD 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                    + +      +   +   L  S+ G+G  TS  +  + NRSGK +      K
Sbjct: 578 PLTSRLKPASGAHFVGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVI-----K 632

Query: 835 INEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           + +   ++    V+D +   +  ++ +G L+  P+ E+    +  KG  I 
Sbjct: 633 LPKGAQVMLPQRVHDKETQYLAAITSEGRLLLFPIAELPELPK-GKGNKII 682


>gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
 gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893]
          Length = 774

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 252/757 (33%), Positives = 377/757 (49%), Gaps = 70/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP 
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K A  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIA
Sbjct: 120 SFAAMRYTESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HN+ EV   CV ++D P+   D L E ++GPDFPT   +I  R  I+  Y 
Sbjct: 180 VGMATDIPPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R     E        IVVT++P+QV+   +LE+IA+ ++ K++  +ADLRDE
Sbjct: 240 TGRGSLRMRARWINESGE-----IVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           SD +   R+VI  +      + ++  L+  T L+  + VN+  + N  +P    L  +L 
Sbjct: 295 SDHENPTRLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +++FR   V RR ++ L+K   R H+L GL +A  N+DEV+ IIR+   P   + ELM 
Sbjct: 355 EWLSFRRTTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKP---KAELMS 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS  Q  AILEL+L  L  L    IR E + 
Sbjct: 412 R--------------------------FGLSGEQAEAILELKLRHLAKLEEMKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  E  E   IL S  RL  +IK ELL+  +     RR+ IVE        + + +  + 
Sbjct: 446 LSAERDELQSILGSEDRLRELIKDELLADAETYGDDRRSPIVERREAKAFSETELVSNDP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +       G+  +  D          +   +F  S G 
Sbjct: 506 VTVVLSEKGWV--------RAAKGHDIEPEGLSYKAGDAFAMAAKGRNNQQAVFLDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y       P    Q           L+      +   F           V+  T  G  
Sbjct: 558 AYSLVAHTFPSARGQGE--------PLSGRINPPSGATFSGLLMGDPARRVLLVTDGGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIR 714
               L D I  NR+GK  + +    +I+S       +    +   +  G+ + FP+S + 
Sbjct: 610 FVTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKPLYLGAISNEGRMLVFPLSELP 669

Query: 715 VFAGRNSVGVRGISLAK------GDQVISMAIVLHAD 745
             A     G + IS+         + V+++A+    D
Sbjct: 670 ELA--KGKGNKIISIPSARVQNREEYVVAVAVFAEDD 704



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 78/199 (39%), Gaps = 21/199 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD   +MA     +          +  S           +   
Sbjct: 517 RAAKGHDIEPEGLSYKAGDAF-AMAAKGRNNQQAVFLDSTGRAYSLVAHTFPSARGQGEP 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    +     +      +    + +L V++ G+G  TS  D    NR+GK + +     
Sbjct: 576 LSGRINPPSG-ATFSGLLMGDPARRVLLVTDGGYGFVTSLDDMISKNRNGKAVVSV---- 630

Query: 835 INEIGALVAVFPVNDNDQ-IIL--VSDKGTLIRVPVNEIRIASRATKGVVIFST------ 885
             +   +++   V ++D+ + L  +S++G ++  P++E+   ++  KG  I S       
Sbjct: 631 -PKGAKIMSPVVVPNSDKPLYLGAISNEGRMLVFPLSELPELAK-GKGNKIISIPSARVQ 688

Query: 886 AKDERVVSVERIRESEIVD 904
            ++E VV+V    E + ++
Sbjct: 689 NREEYVVAVAVFAEDDQLE 707


>gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse]
 gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse]
          Length = 749

 Score =  553 bits (1425), Expect = e-155,   Method: Composition-based stats.
 Identities = 226/749 (30%), Positives = 371/749 (49%), Gaps = 64/749 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLPFDKEH--IEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  L++GQGNFG++
Sbjct: 59  RLLKLNPEQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EPVVL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN  E+ D  + +I +PD + + L + + GPDFPTG + +  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  S     I+VTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRIGRGFFRLRSRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L+  K     +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R++V++RR+ Y LN+   R  +L G  IA  NLDEV++IIR    P+       
Sbjct: 359 QQWLEHRQQVLIRRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKK------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  AIL +RL  L  L   +IR E +
Sbjct: 413 -----------------------ELINCFELTENQAEAILNMRLRSLHKLEEFEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           +L  + ++  ++L+S ++   +I +E+  V+           RRT         +D   +
Sbjct: 450 ALKADKEKLQNLLASSTKQWKMISEEIRKVRKIFGPETLLGKRRTTFEEAPRHAIDDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVK--RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
             I +E + + +S  G+++  R  LS Y+A          +  ++ D +   F   T   
Sbjct: 510 AMIEKEPVTIVISEKGWMRALRGHLSDYKA----------LSFKEGDCLKLAFPAFTTDK 559

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +   S+ G  +      LP G        ++  +          +    E         +
Sbjct: 560 ITMISTGGKFFCINANDLPGGRGHGEPIRILVDMDDEHDILTAFVHNVEE--------KL 611

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           +  + +GN      ++ I   R GK  M +   D++         + + +  +  + + F
Sbjct: 612 LLISSYGNGFIVPATEVIANTRKGKQVMNVKFLDKVKLCIPVKG-DHLAVIGENRKMLIF 670

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            I  I   +     GVR     +G  V +
Sbjct: 671 AIEQIPEMS--RGKGVRLQRYKEGGVVDA 697



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 9/167 (5%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +S  +GD +           D    I                               +
Sbjct: 538 KALSFKEGDCLK--LAFPAFTTDKITMISTGGKFFCINANDLPGGRGHGEPIRILVDMDD 595

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +     +   E+ +L +S  G G    + +   + R GK +          +  +   
Sbjct: 596 EHDILTAFVHNVEEKLLLISSYGNGFIVPATEVIANTRKGKQVMNVKF-----LDKVKLC 650

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            PV   D + ++ +   ++   + +I   SR  KGV +    +   V
Sbjct: 651 IPVK-GDHLAVIGENRKMLIFAIEQIPEMSR-GKGVRLQRYKEGGVV 695


>gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000]
 gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia
           solanacearum GMI1000]
          Length = 781

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 254/754 (33%), Positives = 366/754 (48%), Gaps = 75/754 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  +   ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K
Sbjct: 9   DPREPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RY
Sbjct: 69  PVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL++L + TVDF PNYDGS  EP +L AR P VL+NG  GIAVGMAT I
Sbjct: 129 TEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGASGIAVGMATEI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIV 249
           P+HNL EV    VA+I +  +    LM+ + GPDFP G  I+     I   Y TGRGS+ 
Sbjct: 189 PSHNLREVATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLK 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE------- 302
           +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       L  E       
Sbjct: 249 VRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSLTPEQLQLKQT 308

Query: 303 ------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-K 348
                             R+V E K +        N L  +TSL+S  ++N+V +    +
Sbjct: 309 LLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGR 368

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + + N+DEV+RIIR S 
Sbjct: 369 PRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESD 428

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P+ A                                   LSE Q   ILE+RL +L  L
Sbjct: 429 EPKPA-----------------------------LMQAFGLSERQAEDILEIRLRQLARL 459

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               I  EL  L  E  E   +L S + +   I +E+ +   +    RRT I E      
Sbjct: 460 EAIKIEQELKDLREEQAELDVLLKSETMMRRRIVKEIETDAKQFGDDRRTLIQEERRA-A 518

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  +V E + V VS  G+V        R ++  G   +    +  D + D F   T  +
Sbjct: 519 AEVKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDA 570

Query: 589 VLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +L F +      G VY   V  LP G     G  L  ++ L  G  I   +       S 
Sbjct: 571 LLIFGTRDDKGTGRVYSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHTLA------SH 622

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKL 702
               V+ +T+ GN    K+ D +   + GK  + LD  D+        ++       +  
Sbjct: 623 AEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPEDAYGAACLSAN 682

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           G+ + FP++ ++  A     GV  + L K + + 
Sbjct: 683 GRLLLFPLAEVKTLAS-GGRGVILMELEKNETLA 715


>gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003]
 gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003]
          Length = 774

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 248/813 (30%), Positives = 381/813 (46%), Gaps = 72/813 (8%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +        E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MDDDNTLDLFTEPPAPEGDFLTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+++R  LI+GQGNFG
Sbjct: 61  AMNELGLSDNAKPVKSARVVGDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD++ + TVDF PNYDG  +EP  L AR P +L+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGVEEEPRQLPARLPFLLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GI 237
             GIAVG+AT IP+HNL EV    VA+I NP I    LM+ + GPDFP G  I+     I
Sbjct: 181 ASGIAVGLATEIPSHNLREVAAATVAMIRNPKIAHAELMQHLPGPDFPGGGQIISSEAEI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E    K  +   
Sbjct: 241 AAAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKK 300

Query: 298 DLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLF 337
            L  E                         R+V E K         +N L  +TSL+S  
Sbjct: 301 ALTPEQLQAKQTMLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNA 360

Query: 338 SVN-MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+N ++     +P +  L  IL  ++AFR   V RRT++ L K  DR H+L G  I   N
Sbjct: 361 SLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+RIIR S  P+ A                                   LS+ Q   
Sbjct: 421 IDEVIRIIRESDEPKVA-----------------------------LMAAFGLSDRQADD 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E  +  ++L S S +  ++ +E+ +   +    R
Sbjct: 452 ILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGSESAMKRLLIKEIEADAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  ++ E + V VS  G+V        RA +  G   +G   +  D 
Sbjct: 512 RT-LIQQEKRATYEARVIDEPVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDG 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++ + S G VY   V  LP G     G  + +++ L  G         
Sbjct: 563 LYAAFQCRTPDTLVAWGSNGRVYSVAVASLPGGRGD--GVPVTSLIELESGSH------L 614

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
               ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L  +      + 
Sbjct: 615 MHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPLLPDASQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A           
Sbjct: 675 VACLSSTGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALAINGAGVMLIGARRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +    +    +         +   + E  +  E
Sbjct: 734 RLDEEKLSGAALAAHVGKRARKGRAPESKLKLE 766



 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +  A   L  G  + +          G+ 
Sbjct: 554 GFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVASLPGGRGDGVPVTSLIELESGSH 613

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 614 LMHYYA--ASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAV----PLAPMP 667

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + D  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 668 LLPDASQVACLSSTGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 714


>gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 791

 Score =  552 bits (1423), Expect = e-155,   Method: Composition-based stats.
 Identities = 261/812 (32%), Positives = 389/812 (47%), Gaps = 75/812 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
            H     +  E G  S+++    + +YL YAI+V+ GRA+PD+ DG KPV RRILF M +
Sbjct: 22  NHDPKPIDLNEDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSMSE 81

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  + K VK AR+ G+V+GK+HPHG+ + YDAL R+AQ +SLR  LI+GQGNFGS DG
Sbjct: 82  MGLRADAKPVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDG 141

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K A  LL ++ + TVDF PNYDGSFQEP +L AR P VL+NG  GI
Sbjct: 142 DGAAAMRYTEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGI 201

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
           AVGMAT IP+HNL EV    VA++ +P +    L+EI+ GPD+P G  I+     I   Y
Sbjct: 202 AVGMATEIPSHNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQIY 261

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA---- 297
            TGRGSI +R    IE+ +  + QIVV E+P   +   +L++I E+   K  V       
Sbjct: 262 ETGRGSIKVRARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTLTL 321

Query: 298 --------------DLRDESDRQ-GYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM 341
                          +RDES +    R+V E K +    +  +N L  +TSL+S   +N+
Sbjct: 322 EQNNLKSTILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNL 381

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V + N  +P +  L  IL  ++ FR   V RRT++ L+K ++R H+L G    + N+D+V
Sbjct: 382 VMIGNDDRPRQKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNIDKV 441

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           ++IIR S  P+                                     LS+ Q   IL++
Sbjct: 442 IKIIRNSDEPKA-----------------------------DLIKEFKLSDRQAEDILDI 472

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E  +   +L S + L   I +E+ S   +    RRT I
Sbjct: 473 RLRQLARLEGIKIEQELKELKTERDDLEGLLQSDTALRKRIIKEIESDMKDFGDDRRTLI 532

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            E    +  E  ++ E + V VS  G+V        R ++      +    +  D +   
Sbjct: 533 QEDKRAV-AETKVIDEPVTVIVSQKGWV--------RVRQGHEHDPTQFSFKAGDALYAT 583

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F V T   +  F S G VY   V  LP       G  L + ++L  G ++          
Sbjct: 584 FEVRTVDVIQGFGSDGRVYTVPVSELPGARGD--GSPLTSFVNLASGSQM------VAYY 635

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEIL-SVETCTQENDI 696
           +  ++  V+ +TK G      ++D    N++GK  + +D     D  L + +       +
Sbjct: 636 AGQSDDLVLLSTKAGFGFLANVADMTTRNKAGKSFLSMDAKVPGDAPLGAAKVRVGMKQV 695

Query: 697 LLTTKLGQCVRFPISAI-RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
              ++  + + FP+  + R+  G    GV  + L   + + S   V    A Y       
Sbjct: 696 ACLSEASKLLVFPLDELKRLPTG--GKGVILMGLDDNEFLASAIAVGPDGATYSGAGRAG 753

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           K         +  +      +    VE  + +
Sbjct: 754 KPTELGLDAKTLKSFAGNRARKGHFVEPRLKD 785


>gi|1495800|emb|CAA65021.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 620

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/651 (36%), Positives = 366/651 (56%), Gaps = 35/651 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            +   KA  R  ++ GL   ++ LDEV+ +IR S N    +  L                
Sbjct: 362 PFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              +  ++K+EL  VK    TPR + + +    ++++    I  ED  V+V+  GY+KR 
Sbjct: 456 ERTMYNLMKKELREVKKNFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRT 515

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
               + A          +  RD+D +  +    T   +L F+SLG V    +  L     
Sbjct: 516 SPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRW 570

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           +  G+ L   ++  +       +   +     +      AT+ G ++R + 
Sbjct: 571 KDIGEHLSQTITNFETNEAILYVEVLD--QFDDATTYFAATRLGQIKRVER 619



 Score = 37.8 bits (86), Expect = 7.3,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 97/350 (27%), Gaps = 21/350 (6%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V+  +   +   + V +I     N + A    ++   +  
Sbjct: 235 RVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 294

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            ++  I+L  D++  +  +     +++Q        +  +       +            
Sbjct: 295 GLRIAIELKKDANTELVLNYLFKYTDLQINY--NFNMVAIDNFTPRQVGIVPILSSYIAH 352

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT--VS 543
               IL+         ++ L  V+  +        V  L+   +     +E++ V+   +
Sbjct: 353 RREVILARSPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFT 412

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
                  V L +YR                 + +  L                 +Y    
Sbjct: 413 EEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLMK 464

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L                 L+  E     +              V  TK G ++R    
Sbjct: 465 KELREVKKNFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPR 518

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            F          +     D ++ V++      +L+ T LG  +  PI  +
Sbjct: 519 SFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHEL 565


>gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1]
          Length = 749

 Score =  552 bits (1422), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/734 (33%), Positives = 367/734 (50%), Gaps = 72/734 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
              +  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+    KY K 
Sbjct: 9   EFETRPLREFTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKS 68

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE
Sbjct: 69  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYTE 127

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL +LG+ TVD+ PN+DG+ +EP +L AR PNVL+NGG GIAVGMAT+IP 
Sbjct: 128 ARLAPYAKLLLQELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPP 187

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  CV ++D P+ D  ALM  +  PDFPT   +I  +  I+  Y TG G++ +R
Sbjct: 188 HNLREVVSACVHLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMR 247

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
                E        I+VT +PYQV+ + +LE+IA  ++ K++  + DLRDESD +   R+
Sbjct: 248 ARYERENGD-----IIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRL 302

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           VI  +        ++  L+  T L+  + VN+  +    +P    L  +L  ++ FR + 
Sbjct: 303 VITPRSNRVDIHRVMEHLFATTDLEKNYRVNLNVIALDGRPRVLGLRELLLEWLTFRTDT 362

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR  + L K +DR H+L GL IA  N+DEV+ IIR    P+                 
Sbjct: 363 VRRRLNWRLQKVQDRLHILEGLLIAYLNIDEVIAIIREEDEPK----------------- 405

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE Q  AILEL+L  L  L    IR E   L  E  E  
Sbjct: 406 ------------PVLMARFGLSERQAEAILELKLRHLAKLEEMKIRGEQGDLERERDELQ 453

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLG 546
            IL S  RL  +IK+EL +  ++    RR+ +V        ++ D +  E + V +S  G
Sbjct: 454 TILGSDERLRELIKEELRADAEQYGDERRSPLVTRSAARALDETDLMPSEPVTVVLSEKG 513

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +       G+  +  D   D     ++   +F    G  Y      L
Sbjct: 514 WV--------RAAKGHEVDAPGLNYKAGDQYRDHAPGRSNQQAVFLDHTGRSYSLTAHTL 565

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G+ L   LS   G R   ++              V AT  G      LSD  
Sbjct: 566 PSA--RGQGEPLTGRLSPAPGARFEHVLCGDPASLW------VLATDAGYGFVCALSDMY 617

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             NRSGK  + +     +L+    T +   ++   +  G+ + FP+S +     R + G 
Sbjct: 618 AKNRSGKALLTVPQGARVLAPTPATADEGAELAAVSSGGRLLVFPLSELP----RLAKG- 672

Query: 725 RGISLAKGDQVISM 738
                 KG+++I +
Sbjct: 673 ------KGNKIIGI 680


>gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
 gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8]
          Length = 768

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 255/811 (31%), Positives = 383/811 (47%), Gaps = 70/811 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   VS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP 
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +LG+ TVD+ PN+DG+ +EP VL AR P+VL+NG  GIA
Sbjct: 120 SFAAMRYTESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HN+ EV   C+ ++D PD  +D L E I+GPDFPT   +I  R  ++  Y 
Sbjct: 180 VGMATDIPPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R     E        +V+T++P+QV+   +LE+IA+ ++ K++  +ADLRDE
Sbjct: 240 TGRGSLRMRARWIRENGE-----VVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           SD +   R+VI  +      D ++  L+  T L+  + VN+  + N  +P    L  IL 
Sbjct: 295 SDHENPTRLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++AFR+  V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM 
Sbjct: 355 EWLAFRKTTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKP---KAELMA 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS  Q  AILEL+L  L  L    IR E + 
Sbjct: 412 R--------------------------FGLSAEQAEAILELKLRHLAKLEEMKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  E  E   IL S  RL  +IK EL    +     RR+ IVE        + D +  + 
Sbjct: 446 LSAERDELQAILGSEDRLRELIKTELEQDAETFGDDRRSPIVEREEARAFSETDLVSNDP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +      +G+  +  D          +   +F  S G 
Sbjct: 506 VTVVLSDKGWV--------RAAKGHDIDPAGLSYKSGDRFALAAKGRNNQQAIFLDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP    Q           L       +   F            +  T  G  
Sbjct: 558 AYSLMAHSLPSARGQGE--------PLTGRINPPSGATFSGLLMGNPERKTLLVTDGGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIR 714
               L+D I  NR+GK  + +     I+      +      +   +  G+ + FP+S + 
Sbjct: 610 FVTSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETASTLYLAAISNEGRMLVFPLSELP 669

Query: 715 VFAGRNSVGVRGISLAK------GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             A     G + IS+         + V+++A+    D    +       +          
Sbjct: 670 ELA--KGKGNKIISIPSARVQNREEYVVAVAVFGEEDQLEVKAGKRKLGLRFGDLEHYLG 727

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                  K    ++     +        E+ 
Sbjct: 728 ERGRRGHKLPRGLQRVDGIDVIPSAARAEEE 758



 Score = 45.6 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 15/196 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD+    A   +             +      L S   +    
Sbjct: 517 RAAKGHDIDPAGLSYKSGDRFALAAKGRNNQQAIFLDSTGRAYSLMAHSLPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G         +   E+  L V++ G+G  TS  D    NR+GK + +  V K
Sbjct: 577 TGRINPPSGATFSGLL--MGNPERKTLLVTDGGYGFVTSLNDMISKNRAGKAVVS--VPK 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
              I   V +        +  +S++G ++  P++E+   ++  KG  I S        ++
Sbjct: 633 GARIMPPVMIPETASTLYLAAISNEGRMLVFPLSELPELAK-GKGNKIISIPSARVQNRE 691

Query: 889 ERVVSVERIRESEIVD 904
           E VV+V    E + ++
Sbjct: 692 EYVVAVAVFGEEDQLE 707


>gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J]
 gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J]
          Length = 780

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/801 (32%), Positives = 385/801 (48%), Gaps = 77/801 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 24  ERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVKSARVVGDVLGKF 83

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 84  HPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLEE 143

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 144 LDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVAAATVAL 203

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +  +    LM+ + GPDFP G  I+     I   Y +GRGS+ +R    IE+ +  + 
Sbjct: 204 IRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRARWKIEELARGQW 263

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------LRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                         +RDES + 
Sbjct: 264 QLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLGLLDAVRDESGKD 323

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVA 363
              R+V E K +        N L  +TSL+S  ++N+V +    +P +  L  IL+ ++ 
Sbjct: 324 APVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQKGLAEILREWIV 383

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R   V RRT++ L K  DR H+L G  + +  +++V+RIIR S +P+ A          
Sbjct: 384 YRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEDPKAA---------- 433

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   ILE+RL +L  L    I  EL +L  E
Sbjct: 434 -------------------LIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREE 474

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             E   +L S + +   I +E+ +   +    RRT I E       E  +V E + V VS
Sbjct: 475 QGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTFIQEERRA-AAEVKVVDEPVTVIVS 533

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL-----GFV 598
             G+V        R ++  G   +    +  D + D F   T  ++L F +      G V
Sbjct: 534 QKGWV--------RTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRV 585

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y   V  LP G     G  L  ++ L  G  I                 +V +T+ GN  
Sbjct: 586 YSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHTFA------GHAEQNLVISTRGGNGF 637

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFA 717
             K+ D +   ++GK  + LD  D+         +   +   ++ G+ + F IS ++  A
Sbjct: 638 LAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRMLLFQISELKTLA 697

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                GV  + L K + +  +  V    A +       +   A  + ++   +E  + K 
Sbjct: 698 S-GGRGVILMELEKNEAL--LQAVAFGAAGFVLSGTGPRGGKAVEQTMTTRAQEPYAGKR 754

Query: 778 DSSVEGNISEERCQELKLKEQ 798
               +    + R  +L L + 
Sbjct: 755 ARKGKTLEPKLRDPKLSLPKP 775


>gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
 gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223]
          Length = 762

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/732 (33%), Positives = 387/732 (52%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +ID+P   L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTSIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTSIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|293510133|ref|ZP_06668841.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|291467077|gb|EFF09595.1| DNA topoisomerase IV, A subunit [Staphylococcus aureus subsp.
           aureus M809]
          Length = 752

 Score =  552 bits (1421), Expect = e-154,   Method: Composition-based stats.
 Identities = 254/843 (30%), Positives = 423/843 (50%), Gaps = 102/843 (12%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M   G   +K + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS
Sbjct: 1   MYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D DPPAA RYTE +L   A  LL D+ K+TV F  NYD +  EP+VL +R+PN+LVNG 
Sbjct: 61  IDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFISNYDDTTLEPMVLPSRFPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI+ G AT+IP HNL EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK 
Sbjct: 121 TGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +G+G I++R     E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++
Sbjct: 181 AYESGKGRIIVRSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEV 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDE+DR G R+ IELK+  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ 
Sbjct: 241 RDETDRTGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIID 300

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
           +++  + EVV  RTK+ L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++
Sbjct: 301 SYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE 360

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                         +E Q  AI+ L+L RLT      +  E   
Sbjct: 361 --------------------------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKE 394

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVRED 537
           L   IK+   IL +   LL +IK+EL  +K +  + R +        + ++ E  +  E+
Sbjct: 395 LEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLIEAEIEEIKIDKEVMVPSEE 454

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           ++++++  GY+KR  +  Y A          + ++D D +     V+T  +VL F++ G 
Sbjct: 455 VILSMTRHGYIKRTSIRSYNASG-----VEDIGLKDGDSLLKHQEVNTQDTVLVFTNKGR 509

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
                V +L     +  G+ +  I+ +        ++    ++    + + VFAT++G +
Sbjct: 510 YLFIPVHKLADIRWKELGQHVSQIVPIE---EDEVVINVFNEKDFNTDAFYVFATQNGMI 566

Query: 658 RRNKLSDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++ +  F     +   IA K+   D+++SV    ++  I + T  G  + +  S +   
Sbjct: 567 KKSTVPLFKTTRFNKPLIATKVKENDDLISVMRFEKDQLITIITNKGMSLTYNTSEL-SD 625

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ I+L   D V+    V   D                               
Sbjct: 626 TGLRAAGVKSINLKAEDFVVMTEGVSENDT------------------------------ 655

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  IL  +++G  KR S    +++ R+ +GI      K N
Sbjct: 656 -----------------------ILMATQRGSLKRISFKILQVAKRAQRGITLLKELKKN 692

Query: 837 EIGALVAVFPVN-DNDQIILVSDK----GTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               +VA   V  ++ Q  L S      G +     N+I  + + T G  I  T     V
Sbjct: 693 PH-RIVAAHVVTGEHSQYTLYSKSNEEHGLI-----NDIHKSEQYTNGSFIVDTDDFGEV 746

Query: 892 VSV 894
           + +
Sbjct: 747 IDM 749



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 16/225 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  IL  T+ G   R   ++IR +   N+ GV  I L  GD ++    V
Sbjct: 445 DKEVMVP---SEEVILSMTRHGYIKR---TSIRSY---NASGVEDIGLKDGDSLLKHQEV 495

Query: 742 LHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
              D      ++       +     +   +  +  S       +  +     ++    + 
Sbjct: 496 NTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIEEDEVVINVFNEKDFNTDA 555

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
           F +  ++ G  K+++   F+ + R  K + AT V +      L++V     +  I ++++
Sbjct: 556 FYVFATQNGMIKKSTVPLFKTT-RFNKPLIATKVKE---NDDLISVMRFEKDQLITIITN 611

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           KG  +    +E+        GV   +   ++ VV  E + E++ +
Sbjct: 612 KGMSLTYNTSELSDTGLRAAGVKSINLKAEDFVVMTEGVSENDTI 656


>gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 793

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/789 (32%), Positives = 376/789 (47%), Gaps = 75/789 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+PD+ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 47  ERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGLRADAKPVKSARVVGDVLGKF 106

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQ +SLR  LI+GQGNFGS DGD  AA RYTE RL K A  LL +
Sbjct: 107 HPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTKIAGLLLSE 166

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSFQEP +L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 167 IDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVASAAIAL 226

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           + +P +    L+ I+ GPD+P G  I+     I   Y TGRGSI +R    +E+ +  + 
Sbjct: 227 MKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETGRGSIKVRARWSVEELARGQW 286

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-------------------SDR 305
           QIVV E+P   +   +L++I E+   K  V    L  E                   S  
Sbjct: 287 QIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQNNLKSTILNVLDGVRDESSKD 346

Query: 306 QGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+V E K +    +  +N L  +TSL+S   +N+V + N  +P +  L  IL  +V 
Sbjct: 347 AAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDGRPRQKGLKEILSEWVE 406

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RRT+Y L K +DR H+L G  I + N+D+V++IIR S  P++           
Sbjct: 407 FRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKIIRNSDEPKS----------- 455

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   IL++RL +L  L    I  EL  L  E
Sbjct: 456 ------------------DLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKQLQTE 497

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +   +L S + L   I +E+ S   +    RRT I E    +  E  ++ E + V VS
Sbjct: 498 RDDLEGLLQSDAVLRKRIIKEIESDLKDFGDDRRTLIQEDKRAV-AETKVIDEPVTVIVS 556

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        R ++      +    +  D +   F V T   +  F S G VY  +V
Sbjct: 557 QKGWV--------RVRQGHEHDATQFSFKAGDALYGTFEVRTIDVIQGFGSDGRVYTVQV 608

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP       G  L + ++L  G ++          +   +  V+ +TK G      +S
Sbjct: 609 SELPGARGD--GSPLTSFVNLATGSQM------VAYYAGQPDDLVLLSTKAGYGFLANVS 660

Query: 664 DFIQINRSGKIAMKLDS---RDEILSVETCT-QENDILLTTKLGQCVRFPISAI-RVFAG 718
           D    N++GK  + +DS    D  L           +   ++  + + F +  + R+  G
Sbjct: 661 DMSTRNKAGKSFISVDSKVPGDAPLGAAKVKVGMKQVACLSEASKLLVFSLDELKRLPTG 720

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
               GV  + L   + + S   V    A Y       K         +  +      +  
Sbjct: 721 --GKGVILMGLDDKEFLASAIAVGSDGATYSGAGRAGKPTELSLDAKTLKSFAGNRARKG 778

Query: 779 SSVEGNISE 787
             VE  + +
Sbjct: 779 HFVEPRLKD 787



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 55/171 (32%), Gaps = 3/171 (1%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD +     V   D           +      L     +        +   G+  
Sbjct: 574 FSFKAGDALYGTFEVRTIDVIQGFGSDGRVYTVQVSELPGARGDGSPLTSFVNLATGSQM 633

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +  +L  ++ G+G   +  D    N++GK   + D SK+     L A   
Sbjct: 634 VAYYA--GQPDDLVLLSTKAGYGFLANVSDMSTRNKAGKSFISVD-SKVPGDAPLGAAKV 690

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                Q+  +S+   L+   ++E++      KGV++      E + S   +
Sbjct: 691 KVGMKQVACLSEASKLLVFSLDELKRLPTGGKGVILMGLDDKEFLASAIAV 741


>gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
 gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11]
          Length = 758

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/732 (33%), Positives = 397/732 (54%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL ++G+ TVD++PN+DG+ +EP +L +R P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  V +++NP  DLD +M+ ++GPD+PT   +I   + IK  Y +G
Sbjct: 181 MATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E+       IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +     A+ ++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R 
Sbjct: 356 IEFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDP---KHELMTR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AILE++L +L  L    IR E + L 
Sbjct: 412 -------------------------FDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDELA 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E      +L S  RL  +IK+E+L+  ++    RR+ +VE      M + D I  E + 
Sbjct: 447 KERDYLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLIPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +      + +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSDKGWI--------RHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVFMGSNGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G +IT ++   E+++       + ++  G    
Sbjct: 559 ALESHTLPSA--RSQGEPITGRLNITAGSQITHVVMGEEEQTW------LISSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  N++GK  + L    ++++ E  +    ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEILAITNEGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S+     +  +EQ  L  S+ G+G      D    N++GK +     +        V+  
Sbjct: 585 SQITHVVMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              ++D+I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 645 ---ESDEILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 679


>gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114]
 gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114]
          Length = 758

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 243/732 (33%), Positives = 397/732 (54%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL ++G+ TVD++PN+DG+ +EP +L +R P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  V +++NP  DLD +M+ ++GPD+PT   +I   + IK  Y +G
Sbjct: 181 MATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E+       IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEEGD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +     A+ ++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R 
Sbjct: 356 IEFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDP---KHELMTR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AILE++L +L  L    IR E + L 
Sbjct: 412 -------------------------FDLSEKQAEAILEIKLRQLAKLEEIKIRGEQDELA 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E      +L S  RL  +IK+E+L+  ++    RR+ +VE      M + D I  E + 
Sbjct: 447 KERDYLEKLLGSERRLNTLIKKEILADAEKFGDDRRSPLVERAEAKAMTERDLIPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +      + +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSDKGWI--------RHAKGHDVDPTTLNYKSGDKYLAHARGKSNAPAVFMGSNGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G +IT ++   E+++       + ++  G    
Sbjct: 559 ALESHTLPSA--RSQGEPITGRLNITAGSQITHVVMGEEEQTW------LISSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  N++GK  + L    ++++ E  +    ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEILAITNEGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S+     +  +EQ  L  S+ G+G      D    N++GK +     +        V+  
Sbjct: 585 SQITHVVMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              ++D+I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 645 ---ESDEILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 679


>gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
 gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1]
          Length = 750

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/750 (32%), Positives = 378/750 (50%), Gaps = 74/750 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+  S  E +        + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MSENAASDFETQ-------PLREFTERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG+AA Y+A+  MAQ ++ R  LI+GQGN+GS 
Sbjct: 54  SELGLSAAAKYKKSARTVGDVLGKYHPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL++LG+ TV++ PN+DG+ QEP  L AR PNVL+NG
Sbjct: 114 D-DPKSFAAMRYTEARLTPYARVLLNELGQGTVEWIPNFDGALQEPERLPARLPNVLLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGI 237
           G GIAVGMAT+IP HNL EVVD CV ++D P+     L E +  PDFPT +  I  R  +
Sbjct: 173 GSGIAVGMATDIPPHNLREVVDACVHLLDRPEATTAELCEHVPAPDFPTASDVITPREEL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  G G++  R     E+      QIV+  +PYQV  A ++E+IA  ++ +++  + 
Sbjct: 233 RTIYERGHGTVRARARWEYEREQA---QIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVE 289

Query: 298 DLRDESDRQG-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD     R+V++L+ R    + +++ L+  T L+  + V++  +    +P  F+L
Sbjct: 290 DLRDESDHDAPVRIVVQLRSRRQDPERVMDHLFATTDLERGYRVHLNVIGLDGRPRVFSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  +++FR E V RR  + L K  DR H+L GL  A  N+DEV+ IIR    P   +
Sbjct: 350 RDLLAEWLSFRTETVRRRLTWRLEKVEDRLHILEGLLTAYLNIDEVIAIIREEDEP---K 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LS+ Q  AILELRL  L  L    IR
Sbjct: 407 PVLMER--------------------------FGLSDAQAEAILELRLRHLARLEEMKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E   L  E  E    L   +RL   +K ELL   +     RR+ +V+      M++ + 
Sbjct: 441 GEQGDLERERDELRATLGDAARLREQVKSELLGDAEAHGDERRSPLVQRGPARAMDETEL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        RA +      +G+  +  D   D  +  ++   +F 
Sbjct: 501 MPSEPVTVVLSEKGWV--------RAAKGHEVDATGLSYKAGDGYLDHALGRSNQPAIFL 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    +++G+ L   L+  +  R  +++    +         + A+
Sbjct: 553 DSTGRAYAVPAHTLPSA--RSQGEPLTKRLTPPEKARFQSVLAGDSESRW------LLAS 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFP 709
             G   R  L +    NRSGK  + L         ++V       ++++ +  G+ + FP
Sbjct: 605 DAGYGFRVPLRELFSRNRSGKAVLTLPDGAAVLPPVTVPAEADGAEVVVASSDGRLLVFP 664

Query: 710 ISAIRVFAGRNSVGVRGI-----SLAKGDQ 734
           +  +   A     G + I      L   ++
Sbjct: 665 LEELPEMA--RGKGNKLIGIPAQRLRDREE 692



 Score = 41.7 bits (96), Expect = 0.62,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 18/107 (16%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN----- 848
              E   L  S+ G+G R    +    NRSGK +           GA V + PV      
Sbjct: 594 GDSESRWLLASDAGYGFRVPLRELFSRNRSGKAVLTL------PDGAAV-LPPVTVPAEA 646

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF-----STAKDER 890
           D  ++++ S  G L+  P+ E+   +R  KG  +           E 
Sbjct: 647 DGAEVVVASSDGRLLVFPLEELPEMAR-GKGNKLIGIPAQRLRDREE 692


>gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107]
 gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107]
          Length = 752

 Score =  551 bits (1420), Expect = e-154,   Method: Composition-based stats.
 Identities = 250/760 (32%), Positives = 399/760 (52%), Gaps = 72/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +  + EE      +S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTEIPVLPEAEER-----ISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSP 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LLD+LG+ TVD++PN+DG+  EP V  AR PN+L+NG
Sbjct: 116 D-DPKSFAAMRYTESRLTKYSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV+ CV ++DNP   +  L + + GPD PT   +I  R  +
Sbjct: 175 TTGIAVGMATDIPPHNLREVVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDEL 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V   ++ SGD   IV+T +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 235 IKMYETGRGSVRMRAVWQKDEESGD---IVITALPHQVSGAKILEQIAAQMQAKKLPMVA 291

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD +   R+V+  +      + ++  L+  T L+  + VNM  +    +P   +L
Sbjct: 292 DLRDESDHENPTRLVVVPRSNRVDLEQVMQHLFATTELERTYRVNMNVIGIDGRPAVKSL 351

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  +++FR     RR +Y L+K   R H+L GL IA  NLDEV+RIIR   +P   +
Sbjct: 352 SKILGEWLSFRTVTTRRRLQYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDP---K 408

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM+R                            L+E QT  ILE +L +L  L    IR
Sbjct: 409 AELMKR--------------------------FGLTEDQTEYILETKLRQLARLEEMKIR 442

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S  +L  ++++ELL   ++    RR+ IV         + + 
Sbjct: 443 GEQSDLEKERDQLQSVLGSAVKLKNLVRKELLQAAEQYGDDRRSPIVVRAEAQALSETEL 502

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        R+ +      +G+  +  D         ++ +V+  
Sbjct: 503 MSVEPITVVISDKGWI--------RSAKGHDIDPTGLSYKAGDSFKFAVHGKSNQNVILL 554

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   ++   G     ++         ++  V+ A+
Sbjct: 555 DSTGRSYAIPAHNLPSA--RGQGEPLSGRINPPSGATFEGVL------MGADDQRVLLAS 606

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G     KL D    N+SGK  + L    ++L  +         +   +  G+ + FP+
Sbjct: 607 DAGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQALLAAVSNDGRLLVFPV 666

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHA 744
           + +   A     G + +++      A+ + V++++++L  
Sbjct: 667 TELPELA--RGKGNKIMNIPSARAAAREEFVVAVSVILPG 704


>gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
 gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451]
          Length = 761

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/732 (33%), Positives = 387/732 (52%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +ID+P   L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTSIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTSIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341]
 gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341]
          Length = 761

 Score =  551 bits (1419), Expect = e-154,   Method: Composition-based stats.
 Identities = 253/805 (31%), Positives = 404/805 (50%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID+P   L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR E V  R +Y L+K   R HVL GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ITFRRETVRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FNLTDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDGQSLSYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +      +++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++        ++V+S  +VL   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +     E
Sbjct: 729 RRGALLPRGLQRVTAIEIETSAEPE 753



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 64/169 (37%), Gaps = 15/169 (8%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV----- 781
           I  AKG  V   ++   A  +Y    C   +  A      G +  + S    S+      
Sbjct: 515 IRHAKGHDVDGQSLSYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEP 574

Query: 782 ------EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                     +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +  
Sbjct: 575 ITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSE 634

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                ++A     D D+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 635 VMTPQVIADL---DKDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1]
 gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1]
          Length = 749

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 232/745 (31%), Positives = 377/745 (50%), Gaps = 60/745 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    ++E   I S+ +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDKMNLPFDKEH--IESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +     Y KCARI G+VMGK+HPHG+A+IYDAL R+AQ++++R  L++GQGNFG++
Sbjct: 59  RLLKLNPGHSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I +P+   + L   + GPDFPTG + +  +  I+ 
Sbjct: 179 GIAVGMATSIPPHNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y  GRG   +R   H E  +     +VVTEIPYQV K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRVGRGFFRLRSRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
           RDES      V+I   R    ++++  L++ T  +  F +N+  L+  K     +L   L
Sbjct: 299 RDESAEDIRIVLIPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K ++  R+EV++RR++Y L++   R  +L G  I   NLDEV++IIR    P+       
Sbjct: 359 KQWLEHRQEVLIRRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEPK------- 411

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                    K LID                L+E Q  AIL +RL  L  L   +IR E  
Sbjct: 412 ---------KKLIDR-------------FELTENQAEAILNMRLRSLRKLEEFEIRKEFE 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           +L  E ++  ++L SR++   II +E++ V+           RRT          D   +
Sbjct: 450 TLRAEKEKLQNLLDSRTKQWKIISEEIIKVRKVFGPHTLLGKRRTTFEEAPRHDFDDIYQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +      + +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLSDYNALSFKEGDCLKLAFPAFTTDKIV 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ ++    + T               ++ 
Sbjct: 562 VISTGGKFFAIAANSLPGG--RGHGEPIRILVDMDDEHDLLTAF------VHHTQEKLLL 613

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + HGN      ++ I   R GK  M +   D++         + + +  +  + + F I
Sbjct: 614 VSSHGNGFIVPATEVIANTRKGKQVMNVKFPDKVKLCVPVKG-DHVAVVGENRKMLIFAI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQV 735
             I   +     GVR     +G  V
Sbjct: 673 EQIPEMS--RGKGVRLQRYKQGGVV 695



 Score = 44.8 bits (104), Expect = 0.068,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 10/169 (5%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +S  +GD +           D    I       A                       + 
Sbjct: 539 ALSFKEGDCLK--LAFPAFTTDKIVVISTGGKFFAIAANSLPGGRGHGEPIRILVDMDDE 596

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +     +   ++ +L VS  G G    + +   + R GK +             +    
Sbjct: 597 HDLLTAFVHHTQEKLLLVSSHGNGFIVPATEVIANTRKGKQVMNVKF-----PDKVKLCV 651

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           PV   D + +V +   ++   + +I   SR  KGV +    +   VV V
Sbjct: 652 PVK-GDHVAVVGENRKMLIFAIEQIPEMSR-GKGVRLQRYKQGG-VVDV 697


>gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
 gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73]
          Length = 749

 Score =  550 bits (1418), Expect = e-154,   Method: Composition-based stats.
 Identities = 233/747 (31%), Positives = 374/747 (50%), Gaps = 60/747 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +I S ++E   I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MSDEMIRSFDKEH--IEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +   K Y KCARI G+VMGK HPHG+ +IYDAL R+AQ +++R  LI+GQGNFG++
Sbjct: 59  RLLRLNPGKAYTKCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDNAAAMRYTEARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT+IP HN+ E+ D  + +I NP  D   L + + GPDFPTG + +  +  I++
Sbjct: 179 GIAVGMATSIPPHNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIED 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           +Y TGRG   +R   H E+ +     IVVTEIPYQ+ K+ ++EK AEL+  +R+  + D+
Sbjct: 239 SYRTGRGLFRLRSRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDI 298

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGIL 358
            DES      V++   R    ++++  L++ T  +  F +N+  L   K     +L   L
Sbjct: 299 HDESAEDIRIVLVPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESL 358

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++  R+EV++RR+ Y LN+   R  +L G  IA  NLDE+V+IIR +  P+       
Sbjct: 359 QQWLQHRKEVLIRRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEPKK------ 412

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E Q  +IL +RL  L  L   +IR E +
Sbjct: 413 -----------------------ELIVCFKLTENQAESILNMRLRSLRKLEEFEIRKEFD 449

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIV---EGLLDMEDE 530
           SL IE ++  ++L+S  +   II +E+  V+           RRT         ++   +
Sbjct: 450 SLKIEKEKLQNLLASNIKQWKIIAEEITRVRKSFGPDTFLGKRRTTFEDAPRHDVNDIHQ 509

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             I +E + + +S  G++        RA +        +  ++ D +   F   T   ++
Sbjct: 510 AMIEKEPVTIVISEKGWM--------RALKGHLNDYKTLSFKEGDCLKLAFPAFTTDKII 561

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G  +      LP G  +  G+ +  ++ +++   I           +     ++ 
Sbjct: 562 VISTGGKFFTISANTLPGG--RGHGEPIRILVDMDKEHDI-----LTAFVYNMEGKRLLI 614

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
            + +GN       D I   R GK  M + S D +         + I +  +  + + F I
Sbjct: 615 -SSYGNGFIVSEIDIIANTRKGKQVMNIKSPDSLKLCIPVKG-DYIAVVGENRKMLIFSI 672

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             I   +     GVR      G  V +
Sbjct: 673 EQIPEMS--RGKGVRLQRYKDGGVVDA 697



 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 9/167 (5%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +S  +GD +  +A                K  +     + G       ++    ++  
Sbjct: 538 KTLSFKEGDCLK-LAFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMDKE 596

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     ++ + +L +S  G G   S  D   + R GK +            +L   
Sbjct: 597 HDILTAFVYNMEGKRLL-ISSYGNGFIVSEIDIIANTRKGKQVMNIK-----SPDSLKLC 650

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            PV   D I +V +   ++   + +I   SR  KGV +        V
Sbjct: 651 IPVK-GDYIAVVGENRKMLIFSIEQIPEMSR-GKGVRLQRYKDGGVV 695


>gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix]
 gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix]
          Length = 753

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 252/785 (32%), Positives = 378/785 (48%), Gaps = 71/785 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S          + + D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDIETPSLFANSGE--QLPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 59  SELGLSATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSP 118

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL +LG+ TVD+ PN+DG+  EP VL AR PNVL+NG
Sbjct: 119 D-DPKSFAAMRYTESRLSRYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNG 177

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
           G GIAVGMAT+IP HNL EV   CV ++++P   L  L E +  PDFPT   +I     +
Sbjct: 178 GSGIAVGMATDIPPHNLREVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAEL 237

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GSI  R     E        IVVT +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 238 RKVYETGQGSIRARARYEREGDD-----IVVTALPHQVSGAKLLEQIASQIRAKKLPMVE 292

Query: 298 DLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD     R+VI  +      + ++  L+  T L+  + VNM  +    +P+   L
Sbjct: 293 DLRDESDHEHPTRLVITPRSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDGRPQVRDL 352

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            G+L  ++ FR E V RR ++ L K + R HVL GL IA  N+DEV+ IIR    P   +
Sbjct: 353 AGLLGEWLEFRIETVRRRLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQP---K 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS++Q  AILEL+L  L  L    IR
Sbjct: 410 PELMSR--------------------------FGLSDIQAEAILELKLRHLAKLEEMKIR 443

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +    L S  RL   +++E+     +    RR+ +V+       ++   
Sbjct: 444 GEQDELATERDQLEKTLGSERRLRTQVRREIEKDAADYGDERRSPLVQRAAAQALDESAL 503

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+         RA +       G+  +  D         ++  V F 
Sbjct: 504 VPTEPLTVVLSEKGWA--------RAAKGHDVDARGLNYKAGDAFQAAVTGRSNQPVAFI 555

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   ++  +G R   +    E++        +  T
Sbjct: 556 DSTGRTYTIAAHTLPSA--RGQGEPLSGRVNPPEGARFVGMATGAEEDRW------LLGT 607

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
            HG     KL D +   ++GK  + + +   +L         E+ I + T  G  + FP 
Sbjct: 608 DHGYGFVAKLGDLLGRQKAGKNVLTVPAGAAVLQPAPVRNPHEDHIAVVTTRGYLLLFPA 667

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           + +   A     G + I     +L  G ++V+ +A++   D          K +      
Sbjct: 668 TELPELA--RGKGNKLIGIPSAALKDGSERVLDVAVLGPQDTLVVHAGKRFKALVPAEWA 725

Query: 765 ISGDT 769
                
Sbjct: 726 EYVGE 730


>gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330]
 gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365]
 gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445]
 gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457]
 gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330]
 gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365]
 gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445]
 gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457]
 gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915]
 gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40]
 gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya]
 gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94]
 gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1]
 gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1]
 gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99]
 gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513]
 gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686]
 gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1]
 gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str.
           63/9]
 gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026]
 gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28]
 gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90]
          Length = 770

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 431

 Score =  550 bits (1417), Expect = e-154,   Method: Composition-based stats.
 Identities = 224/456 (49%), Positives = 317/456 (69%), Gaps = 26/456 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG++A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ K+T+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +K+G   +++LN+LY+YT LQ+ F V M++L    P    L  +L  ++  R +V+ RRT
Sbjct: 302 VKKGEEPELVLNKLYKYTDLQTTFGVIMLSLVNNVPRVLNLKEMLNEYIKHRFDVITRRT 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L+KA  RAH+L G  IA+ N+D ++ +IR S +   AR +L+++             
Sbjct: 362 AFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEK------------- 408

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                           +++Q R+IL+++L RLTGL 
Sbjct: 409 -------------YAFTDIQARSILDMKLQRLTGLE 431


>gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941]
 gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus
           2308]
 gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
 gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase
           IV, subunit A:DNA gyrase C-terminal repeat,
           beta-propeller [Brucella melitensis biovar Abortus 2308]
 gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19]
 gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038]
 gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292]
 gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 770

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRVFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
 gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870]
 gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68]
          Length = 770

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRVFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001]
 gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001]
          Length = 774

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 249/813 (30%), Positives = 386/813 (47%), Gaps = 72/813 (8%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +        E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+
Sbjct: 1   MDDDNTLDLFTEPPPPEGDFLTLGNYAEGAYLQYAVSVVKGRALPDVCDGQKPVQRRILY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+++R  LI+GQGNFG
Sbjct: 61  AMNELGLSDNAKPVKSARVVGDVIGKYHPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   +  LLD++ + TVDF PNYDG  QEP  L AR P +L+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGVEQEPRQLPARLPFLLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GI 237
             GIAVG+AT IP+HNL EV    VA+I NP I    LM+ + GPDFP G  I+     I
Sbjct: 181 ASGIAVGLATEIPSHNLREVAAATVAMIRNPKIAHADLMQHMPGPDFPGGGQIISSEAEI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------ 291
             AY +GRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E    K      
Sbjct: 241 AAAYESGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKK 300

Query: 292 ---------RIVDIADLRDESDRQG----YRVVIELKRGASAD-VILNQLYRYTSLQSLF 337
                    +   ++ L    D  G     R+V E K         +N L  +TSL+S  
Sbjct: 301 ALTPEQLQAKQTMLSLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNA 360

Query: 338 SVN-MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+N ++     +P +  L  IL  ++AFR   V RRT++ L K  DR H+L G  I   N
Sbjct: 361 SLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVYLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+RIIR S  P+ A                                   LS+ Q   
Sbjct: 421 IDEVIRIIRESDEPKVA-----------------------------LMAAFGLSDRQADD 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E  +  ++L+S S +  ++ +E+ +   +    R
Sbjct: 452 ILEIRLRQLARLEKIKIEKELADLRDEKAKLEELLASESAMKRLLIKEIEADAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  ++ E + V VS  G+V        RA +  G   +G   +  D 
Sbjct: 512 RT-LIQQEKRATYEARVIDEPVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDG 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++ + S G VY   V  LP G     G  + +++ L  G         
Sbjct: 563 LYAAFPCRTPDTLIAWGSNGRVYSVAVASLPGGRGD--GVPVTSLIELESGSH------L 614

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
               ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+      + + 
Sbjct: 615 MHYYAAAADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDASQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A           
Sbjct: 675 VACLSSTGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALAINGAGVMLIGARRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +    +    +         +   + E  +  E
Sbjct: 734 RLDEEKLSGAALAAHVGKRARKGRAPESKLKLE 766


>gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
 gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130]
          Length = 765

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/731 (32%), Positives = 363/731 (49%), Gaps = 61/731 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + +   ++  YL YA++ I+GRA+PD+RDG+KPVHRRIL  M  + +     + KCA
Sbjct: 25  IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGK+HPHG+A+IYDAL R++Q +++R  L++GQGNFG+VDGD PAA RYTE R+
Sbjct: 85  RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             AA  LL+ + +D VDFR  Y+   +EP+VL A +PN+L NG  GIAVGMATNIP HN+
Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVS 254
            E+ D  + +I  P+   D LME + GPDFPTG +I      +   Y TG+G   +R   
Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
             E     + QIVVTEIPYQV K+ ++EK AEL+  K++  + D+ DES      V+   
Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDESAEDIRVVLTPK 324

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRT 373
            R     +++ QL+R T L++ F +NM  L+G K P+  ++  +L+A++  R+ V+VRR 
Sbjct: 325 SRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRRN 384

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L +   R  VL G  IA  N+DEV+RIIR   +P+ A                    
Sbjct: 385 RNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQA-------------------- 424

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  A+L LRL  L  L   ++R E + L  E      +L+S
Sbjct: 425 ---------LIARFELTDAQAEAVLNLRLRALHKLEEMELRKEFSDLKEEKASIEGLLAS 475

Query: 494 RSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM---EDEDCIVREDMVVTVSHL 545
                  I  E+   K +         RRT     +           I +E + + VS  
Sbjct: 476 DELQWKTIAWEVGQTKKKFSKATDLGARRTTFETAMEVDLDAVAAAMIEKEPVTIVVSQK 535

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        RA +      + +  ++ D +   F   T   +L F++ G  Y     +
Sbjct: 536 GWI--------RALKGHAPDFAALTFKEGDKLLTAFHAETTDKLLMFTTAGKFYTLAADK 587

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP G  +  G+ +  ++ ++    I ++               +  +  GN      +D 
Sbjct: 588 LPGG--RGHGEPVRIMVDMDNDADILSLF------IHKPGRKRMLVSSLGNGFVVAETDL 639

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE----NDILLTTKLGQCVRFPISAIRVFAGRNS 721
           I   R GK ++ +    E         E    + + +  +  + + FP+  +    GR  
Sbjct: 640 IANTRKGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLLIFPLDQVPEM-GRG- 697

Query: 722 VGVRGISLAKG 732
            GVR      G
Sbjct: 698 KGVRLQRYKDG 708


>gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
 gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA]
          Length = 780

 Score =  550 bits (1416), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/801 (32%), Positives = 384/801 (47%), Gaps = 77/801 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 24  ERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVKSARVVGDVLGKF 83

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 84  HPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLEE 143

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 144 LDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVAAATVAL 203

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +  +    LM+ + GPDFP G  I+     I   Y +GRGS+ +R    IE+ +  + 
Sbjct: 204 IRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRARWKIEELARGQW 263

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------LRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                         +RDES + 
Sbjct: 264 QLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLGLLDAVRDESGKD 323

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVA 363
              R+V E K +        N L  +TSL+S  ++N+V +    +P +  L  IL+ ++ 
Sbjct: 324 APVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQKGLAEILREWIT 383

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R   V RRT++ L K  DR H+L G  + +  +++V+RIIR S  P+ A          
Sbjct: 384 YRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVEDVIRIIRESEEPKAA---------- 433

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   ILE+RL +L  L    I  EL +L  E
Sbjct: 434 -------------------LIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREE 474

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             E   +L S + +   I +E+ +   +    RRT I E       E  +V E + V VS
Sbjct: 475 QGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTFIQEERRA-AAEVKVVDEPVTVIVS 533

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL-----GFV 598
             G+V        R ++  G   +    +  D + D F   T  ++L F +      G V
Sbjct: 534 QKGWV--------RTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRV 585

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y   V  LP G     G  L  ++ L  G  I                 +V +T+ GN  
Sbjct: 586 YSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHTFA------GHAEQSLVISTRGGNGF 637

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFA 717
             K+ D +   ++GK  + LD  D+         +   +   ++ G+ + F IS ++  A
Sbjct: 638 LAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTLA 697

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                GV  + L K + +  +  V    A +       +   A  + ++   +E  + K 
Sbjct: 698 S-GGRGVILMELEKNEAL--LQAVAFGAAGFVLSGTGPRGGKAVEQTMTTRAQEPYAGKR 754

Query: 778 DSSVEGNISEERCQELKLKEQ 798
               +    + R  +L L + 
Sbjct: 755 ARKGKTLEPKLRDPKLSLPKP 775


>gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D]
 gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D]
          Length = 780

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 254/803 (31%), Positives = 370/803 (46%), Gaps = 75/803 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YAI+V+ GRA+P++ DG KPV RRILF M +MG+  + K VK AR+ G+V+GK+
Sbjct: 24  ERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVKSARVVGDVLGKF 83

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 84  HPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISRLLLEE 143

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L + TVDF PNYDGS +EP +L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 144 LDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSHNLREVAAATVAL 203

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I +  +    LM+ + GPDFP G  I+     I   Y +GRGS+ +R    IE+ +  + 
Sbjct: 204 IRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRARWKIEELARGQW 263

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------LRDESDRQ 306
           Q+VV E+P   +   +LE+I EL   K                         +RDES + 
Sbjct: 264 QLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLGLLDAVRDESGKD 323

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVA 363
              R+V E K +        N L  +TSL+S  ++N+V +    +P +  L  IL+ ++ 
Sbjct: 324 APVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQKGLAEILREWIT 383

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R   V RRT++ L K  DR H+L G  + +  +++V+RIIR S  P+ A          
Sbjct: 384 YRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEEPKAA---------- 433

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   ILE+RL +L  L    I  EL +L  E
Sbjct: 434 -------------------LIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREE 474

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             E   +L S + +   I +E+ +   +    RRT I E       E  IV E + V VS
Sbjct: 475 QGELDVLLKSETMMRRRIIKEIETDAKQYGDDRRTLIQEERRA-AAEVKIVDEPVTVIVS 533

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL-----GFV 598
             G+V        R ++  G   +    +  D + D F   T  ++L F +      G V
Sbjct: 534 QKGWV--------RTRQGHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRV 585

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y   V  LP G     G  L  ++ L  G  I                 +V +T+ GN  
Sbjct: 586 YSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHTFA------GHAEQNLVISTRGGNGF 637

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFA 717
             K+ D +   ++GK  + LD  D+         +   +   ++ G+ + F IS ++  A
Sbjct: 638 LAKVGDMVGRQKAGKAFLTLDEGDQPNKPAPVPADAYGVACLSEGGRLLLFQISELKTLA 697

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                GV  + L K + ++       A                Q                
Sbjct: 698 S-GGRGVILMELEKNEALLQAVAFGAAGFVLSGTGPRGGKAVEQTMTTRAQEPYAGKRAR 756

Query: 778 DSSVEGNISEERCQELKLKEQFI 800
                     +    L      +
Sbjct: 757 KGKTLEPKLRDPKLSLPKPAPDV 779


>gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
 gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2]
          Length = 770

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M]
 gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
 gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M]
 gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo]
          Length = 775

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 423

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 424 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 454

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 455 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 514

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 515 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 566

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 567 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 624

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 625 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 678

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 679 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
 gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12]
          Length = 756

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 258/761 (33%), Positives = 389/761 (51%), Gaps = 75/761 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I++   E++      ++T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKKIMNEVAEQK------ALTEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS 
Sbjct: 55  SELGLKATAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSP 114

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG
Sbjct: 115 D-DPKSFAAMRYTEARLSAYADVLLAELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNG 173

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGI 237
             GIAVGMA++I  HNL EV + CV ++DNP  DL A+M+ I+GPDFPT A I      I
Sbjct: 174 ATGIAVGMASDILPHNLTEVANACVHLLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAI 233

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATG GSI +R + + EK     + IV+T +PYQV+ A ++E+IA  +++K++  + 
Sbjct: 234 TTLYATGHGSIKMRAIYNPEK-----QNIVITALPYQVSGAKVMEQIALQMQQKKLPMVE 288

Query: 298 DLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD     R+VI  +      D +++ L+  T L+  + VN   +    KP    L
Sbjct: 289 DLRDESDHEHPTRLVIIPRSNRVDVDGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKNL 348

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           I IL  ++ +R  VV RR +Y L K  +R HVL GL IA  N+DEV+ IIR   +P+   
Sbjct: 349 ITILSEWLIYRVSVVKRRLEYRLAKVLERIHVLEGLLIAYLNIDEVIAIIREHEHPKQ-- 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                      G      LSE Q  AILE++L  L  L    IR
Sbjct: 407 ---------------------------GLIARFNLSERQAEAILEMKLRHLAKLEEIKIR 439

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            EL+ L IE      IL+S  +L  ++K E++  +D     RR+ I+        ++ED 
Sbjct: 440 GELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDAFGDVRRSPIIVRQESQALKEEDI 499

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        RA +      S +  +  D         ++  ++FF
Sbjct: 500 LPNEPITVVLSKNGWV--------RAAKGHDINGSELSYKAGDEFKAQATARSNQQIVFF 551

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G VY      LP    Q           L         + F           V+ A+
Sbjct: 552 DSEGKVYSLPGHSLPSARGQGE--------PLTGKLNPAEGILFETVVGGEAEQLVLLAS 603

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G     K+SD    NR+GK  +KL +   IL       + +  +   T +G+ + F I
Sbjct: 604 DAGYGFVAKMSDLYVKNRNGKACVKLPAASRILPPRILPNQEELLVACATSVGRLLIFSI 663

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHAD 745
             +   +     G + IS+      ++ + VI + ++ + D
Sbjct: 664 KELPELS--RGKGNKLISIPATKTASREEYVIDVQVLSNQD 702



 Score = 44.4 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 25/213 (11%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + +K G         +R   G +  G    S   GD+  + A                 +
Sbjct: 508 VLSKNGW--------VRAAKGHDINGSEL-SYKAGDEFKAQATARSNQQIVFFDSEGKVY 558

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                 L S   +        +  EG + E         EQ +L  S+ G+G      D 
Sbjct: 559 SLPGHSLPSARGQGEPLTGKLNPAEGILFETVVG--GEAEQLVLLASDAGYGFVAKMSDL 616

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASR 875
            + NR+GK      +   +    ++    + + +++++   +  G L+   + E+   SR
Sbjct: 617 YVKNRNGK--ACVKLPAASR---ILPPRILPNQEELLVACATSVGRLLIFSIKELPELSR 671

Query: 876 ATKGVVIFST------AKDERVVSVERIRESEI 902
             KG  + S       +++E V+ V+ +   ++
Sbjct: 672 -GKGNKLISIPATKTASREEYVIDVQVLSNQDV 703


>gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
 gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1]
          Length = 770

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKTPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
 gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603]
          Length = 761

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 242/732 (33%), Positives = 386/732 (52%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +ID+P   L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+ +Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTGIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTSIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTSIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|54020319|ref|YP_115549.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
 gi|53987492|gb|AAV27693.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 232]
          Length = 846

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 222/814 (27%), Positives = 392/814 (48%), Gaps = 44/814 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    + +  +   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M Q+G++ +K
Sbjct: 2   NKSLDSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+++IYDAL R+AQ+W +   L+E  GN GS+D DPPAA R
Sbjct: 62  NYKKSARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + +  LL+ + K+ V F PN+D S +EP +L A +PN+L+NG  GIA G AT 
Sbjct: 122 YTEVRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + +I NP I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I 
Sbjct: 182 IPPHNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I     I +    +  I +T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  
Sbjct: 242 ISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVS 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IEL++  + D+I+N L + T LQ  +S N VA+    P+  ++  ++  ++    ++ 
Sbjct: 301 ILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIK 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +    + L K + R  ++ G        DEV+++IR S N                 + D
Sbjct: 361 LAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDN------------SKVGVVSD 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI                  S+ Q  AI  +RL RL+ + +     E  +L   I     
Sbjct: 409 LIKF-------------FNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           ++ ++      +   L   K     PR+T     +  + +  ++ +  E     ++  G 
Sbjct: 456 LIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGL 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++ +     +           + + DF     I++     +F ++ G +    V ++P
Sbjct: 516 YKKLDI-----KNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             + +     L   L +   ++I   +     +S  ++ +++F +K    +R  L   ++
Sbjct: 571 ELNLKNSPNNLKITLGIPNNQQI---LSVFFADSFESSQFLIFISKFSFAKRMNLDQLMK 627

Query: 668 INRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I +     + +    DE++SV    +  +I+L T   + ++  IS I     RNS G++ 
Sbjct: 628 IKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEI-PIYTRNSTGIKI 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
               K + + +   +  +++                 L  G+                  
Sbjct: 687 FRHRKNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGNKILTPKNFKTKLDFSLSP 746

Query: 787 EERCQELKLKEQFILTVSEKGFG-KRTSSYDFRI 819
           +      +      L + E G G K  S  DFR 
Sbjct: 747 KSIIIYNEN-----LQIFEFGEGLKIFSLNDFRK 775



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNI 785
           L  GD  I   I+                + A  ++   + +   +    +        I
Sbjct: 534 LPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQI 593

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +     QF++ +S+  F KR +        +     +  ++ +  E   L++VF
Sbjct: 594 LSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQK----KLQNIFRFKEGDELISVF 649

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                  I+L++ +   +++ ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 650 LEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
 gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A]
          Length = 775

 Score =  549 bits (1415), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 423

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 424 NLDEVIRIIREEDEPKQ-----------------------------ELMRVFELTDVQAE 454

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 455 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 514

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 515 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 566

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 567 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 624

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 625 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 678

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 679 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
 gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33]
          Length = 770

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKGG 715


>gi|227496006|ref|ZP_03926317.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834437|gb|EEH66820.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 519

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 224/519 (43%), Positives = 317/519 (61%), Gaps = 28/519 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   ++    +  I    ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF M
Sbjct: 1   MSKSATTTPPPIDGEIVEQDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS+
Sbjct: 61  DRMGLRPDRPHVKSSRVVGDVMGRLHPHGDVAIYEALVRLAQPFTMRLPLIDGHGNFGSL 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D D PAA RYTE RL   A  L  D+ +DTVDF PNYD +  EP VL A +PN+LVNG  
Sbjct: 121 D-DGPAAPRYTEARLASPALALTADIDEDTVDFSPNYDYTLTEPDVLPAAFPNLLVNGTS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATN+P HNL EVV     +I +P+  L+ LM  + GPD PTG +I+G  GI+ A
Sbjct: 180 GIAVGMATNMPPHNLVEVVSAARHLITHPEASLEDLMAFVPGPDLPTGGMIVGLDGIREA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG  + R  + IE  +  ++ IVVTE+PY V    ++ +I + V  K++  I D+ 
Sbjct: 240 YRTGRGKFLTRATARIENITPRKKGIVVTELPYLVGPEKVIARIKDAVSAKKLQGITDVA 299

Query: 301 DESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           D +DR  G R+VI +K G + + +L QLY++T L+  F +N V L   +P    L  +L 
Sbjct: 300 DLTDRKNGTRLVIGVKNGYNPEAVLAQLYKHTPLEDSFGINNVCLVDGQPRTLGLRELLD 359

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            FV  R  VV RRT++ L K R+R H++ GL IA+ ++DEV++++R S +  TAR  LMQ
Sbjct: 360 VFVRHRMTVVERRTRFRLGKRRERQHLVEGLLIAILDIDEVIQVVRSSDDAATARTRLMQ 419

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILEL+L RLT     ++  E + 
Sbjct: 420 --------------------------VFDLSEAQASYILELQLRRLTKFSVIELEKERDE 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           L  EI++   IL+  + L G++ +EL +V +E  TPRRT
Sbjct: 454 LAREIEQLEAILADETLLRGVVSRELAAVAEEFGTPRRT 492


>gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
 gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196]
          Length = 775

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 247/765 (32%), Positives = 391/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 423

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 424 NLDEVIRIIREEDEPKQ-----------------------------ELMRVFELTDVQAE 454

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 455 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 514

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 515 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 566

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 567 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 624

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 625 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 678

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 679 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
 gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 752

 Score =  549 bits (1414), Expect = e-154,   Method: Composition-based stats.
 Identities = 237/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV +  + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVANAAITLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
            + E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WNKEDG-----AVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDKLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D    E + + +S  G+V
Sbjct: 451 LASERKMNTLLKKELQADADAFGDDRRSPLHEREEARAMNEHDMQPSEPVTIVLSQSGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKAGDSFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFICTFNDLVSR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       ++D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALISLPDNAHVMPPLVIENDSDMLLAITAAGRMLMFPVSDLPALS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 46.7 bits (109), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLSYKAGDSFKAA--VKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK + +   + 
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFICTFNDLVSRNRAGKALISLPDNA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     ND+D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IENDSDMLLAITAAGRMLMFPVSDLPALSK-GKGNKIINIPSAE 678


>gi|269219416|ref|ZP_06163270.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211209|gb|EEZ77549.1| DNA gyrase/topoisomerase IV, A subunit [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 558

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 224/567 (39%), Positives = 325/567 (57%), Gaps = 34/567 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + +  + +T EM+ S+L Y+ +VI  RA+PD RDGLKPV RRILF M QMG+  ++
Sbjct: 6   EPSAEKVIDIDVTQEMRTSFLEYSYSVIYARALPDARDGLKPVQRRILFQMGQMGLRPDR 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            +VK +R+ G+VMG+ HPHG+ AIYDA+ R+AQ ++LRL +I+G GNFGS+D D PAA R
Sbjct: 66  GHVKSSRVVGDVMGRLHPHGDVAIYDAMVRLAQPFTLRLPMIDGHGNFGSLD-DGPAAPR 124

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+  AA  ++  L +DTVD  PNYD + ++P VL A  PN+LVNG  GIAVGMATN
Sbjct: 125 YTEVRMAPAAMAMISSLDEDTVDMAPNYDNTLEQPEVLPAAIPNLLVNGSSGIAVGMATN 184

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           +P HNL EV+     ++ NPD DL+ +M  + GPD P G  I+G  GI+ AYA+GRG   
Sbjct: 185 MPPHNLVEVIAAARCLLANPDADLEEIMRFVPGPDLPEGGKIVGLEGIREAYASGRGIFK 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGY 308
            R  +HIE  +  ++ IV TE+PY V    ++EK+ + +  K++  +  +++ +D   G 
Sbjct: 245 TRATAHIENVTARKKGIVFTELPYLVGPEKVIEKLKDAINAKKVQGVTGIQNLTDRHHGM 304

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+V+E+K G + + +L QLYR+T L+  F +N VAL G +P+   LI +L+ F+  R +V
Sbjct: 305 RLVVEVKNGFNPEAVLLQLYRHTPLEDSFGINNVALVGGQPQTLGLIELLRVFLDHRLDV 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR+++ L+KA    H++ GL  AV N+DEV+ +IR S +  TAR  LMQ         
Sbjct: 365 TRRRSRFRLDKASRELHLVDGLLAAVVNIDEVIALIRSSDDAATARTRLMQ--------- 415

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E Q   ILELRL RLT     ++    + L   I +  
Sbjct: 416 -----------------VFDLTEPQAEYILELRLRRLTKYSVIELEQRRSELLEAIADLE 458

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC------IVREDMVVTV 542
           D+L+S  RL  ++  EL  V     TPRRT ++E     E          +  +   V +
Sbjct: 459 DVLNSPERLRDLVSAELDEVARAHGTPRRTVLLESDGATEAGSSAALPLEVADDPCFVLL 518

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           S  G   R   S   A+         +
Sbjct: 519 SGTGLAARTADSSPPAREGERGPHDAI 545


>gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7]
          Length = 749

 Score =  549 bits (1414), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/787 (31%), Positives = 384/787 (48%), Gaps = 69/787 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +SS +   +G   + + D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MSSLDLNLEGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  SAASKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +LG+ TVD+ PN+DG+ +EP VL AR PNVL+NGG GIA
Sbjct: 120 SFAAMRYTESRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HNL EV   CV ++DNP   +  L E I+GPDFPT   +I  R  ++  Y 
Sbjct: 180 VGMATDIPPHNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G G + +R     E        I++T +PYQV+ + +LE+IA  +  K++  + DLRDE
Sbjct: 240 SGNGGLRMRARYERE-----GTDIIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI+ +      + ++  L+  T L+  + VN+  +    +P+   L+ +L 
Sbjct: 295 SDHEHPTRLVIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDGRPQVKGLLTLLG 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR E V RR ++ L+K   R H+L GL IA  N+DEV+RIIR +  P   +  LM+
Sbjct: 355 EWLHFRTETVRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEP---KPVLME 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L++ Q  AILEL+L  L  L    IR E + 
Sbjct: 412 R--------------------------FGLTDTQAEAILELKLRHLAKLEEMKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVRED 537
           L  E       L S +RL  +I++E+ +  ++    RR+ IV       M++ + +  E 
Sbjct: 446 LEKERDSLEKTLGSAARLKRLIREEIQADAEKFGDERRSPIVARAAAQAMDESELVPTEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S +G+V        RA +       G+  +  D         ++   +F  S G 
Sbjct: 506 LTVVLSKMGWV--------RAAKGHDVDAEGLSYKSGDAFLSAARGRSNQPAVFIDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP    + +G+ L   LS   G R   +M          +   + +T +G  
Sbjct: 558 TYTLPAHTLPSA--RGQGEPLSGRLSPPDGARFVGVM------MGAPSDLFLLSTDYGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRV 715
               L D    N++GK  + + +  ++L          + I   T  G  +   ++ +  
Sbjct: 610 FVCSLEDMQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAATSEGHLLVTRLNELPR 669

Query: 716 FAGRNSVGVRGI-----SLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            A     G + I      L   ++ V ++ +V   +          K M           
Sbjct: 670 MA--RGKGNKIINVPSAKLKTREEWVAAITLVQDGEPLTVVAGKKFKTMKGPEVDEYAAE 727

Query: 770 EEITSLK 776
                 K
Sbjct: 728 RGKRGKK 734



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 16/193 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD  +S A                 +      L S   +    
Sbjct: 517 RAAKGHDVDAEGLSYKSGDAFLSAARGRSNQPAVFIDSTGRTYTLPAHTLPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S  +G  +      +       L  ++ G+G   S  D +  N++GK +    V  
Sbjct: 577 SGRLSPPDG--ARFVGVMMGAPSDLFLLSTDYGYGFVCSLEDMQSRNKAGKAV--LSVPA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK------D 888
             ++   V V  + D D I   + +G L+   +NE+   +R  KG  I +         +
Sbjct: 633 GAKVLPPVRVRDI-DADWIAAATSEGHLLVTRLNELPRMAR-GKGNKIINVPSAKLKTRE 690

Query: 889 ERVVSVERIRESE 901
           E V ++  +++ E
Sbjct: 691 EWVAAITLVQDGE 703


>gi|1321899|emb|CAA63254.1| gyrA [Mycobacterium smegmatis]
          Length = 469

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 208/455 (45%), Positives = 285/455 (62%), Gaps = 5/455 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +  + E    I  V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M
Sbjct: 1   MTDTTLPPEGEAHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
              G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS 
Sbjct: 61  YDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             DPPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG G
Sbjct: 121 GNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSG 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDN----PDIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNLGE+ +     ++N     +   +A+ME ++GPDFPT  +I+G  G
Sbjct: 181 GIAVGMATNIPPHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG 240

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I++ Y TGRGSI +RGV  IE+ S  R  IV+TE+PYQVN    +  IAE VR+ ++  I
Sbjct: 241 IEDTYKTGRGSIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGI 300

Query: 297 ADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           +++ D+ SDR G R+V+ELKR A A V+LN LY++T LQ+ F  NM+++    P    L 
Sbjct: 301 SNIEDQSSDRVGLRIVVELKRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLD 360

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +++ +V  + +V+VRRT+Y L KA +RAH+L GL  A+  LDEV+ +I  +     A  
Sbjct: 361 QLIRLYVDHQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALILVALATGRAGD 420

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
             +                  +           LS
Sbjct: 421 ITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLS 455


>gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus]
          Length = 761

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/784 (31%), Positives = 403/784 (51%), Gaps = 68/784 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +    + D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  +  D         +    +F  S G  Y
Sbjct: 507 VVLSEKGWV--------RHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMSEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A
Sbjct: 611 CKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++      + ++V+S  I L   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGKRKLGLKPADLENFRGERG 728

Query: 773 TSLK 776
               
Sbjct: 729 RRGS 732



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  ++Q  L  S+ G+G      D    NRSGK +     +        V   
Sbjct: 585 SSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 693


>gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
 gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573]
          Length = 761

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/732 (32%), Positives = 386/732 (52%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID+P   L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVRMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+ +Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FDLTGIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   +
Sbjct: 611 CKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 582 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 641

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 642 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 679


>gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840]
 gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840]
          Length = 775

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/765 (32%), Positives = 390/765 (50%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +      +L G  IA  
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYL 423

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 424 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 454

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 455 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 514

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 515 TRLGKRRTTFTHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 566

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 567 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 624

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 625 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 678

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 679 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 720


>gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
 gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301]
          Length = 787

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/765 (32%), Positives = 395/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D+ E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 18  MGKSLIPPDDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 76

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 77  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 136

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 137 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 196

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++P+  ++ L+                       
Sbjct: 197 GIAVGMATNIPPHNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLKC 256

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I +AY TGRG+  +R     E+ +     IV+TEIPYQV K
Sbjct: 257 KVRGPDFPTGGILVEEHGNILDAYRTGRGAFRVRARWEKEEGNRGTWVIVITEIPYQVQK 316

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 317 SRLIEKIAELLLAKKLPLLDDVRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 375

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L GL IA  
Sbjct: 376 VSLNMNVLSHGKVPNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIAYL 435

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                  T  L++VQ  
Sbjct: 436 NLDEVIRIIREEDEPKQ-----------------------------DLMRTFELTDVQAE 466

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           +IL +RL  L  L   +IR E + L +E  +   +L+S +R    I  E+ SV+++    
Sbjct: 467 SILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQWKKISAEIKSVREKFGPK 526

Query: 516 -----RRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT   +     L+   +  I RE + + VS  G++        RA +      S
Sbjct: 527 TELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 578

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 579 TLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 636

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T               ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 637 QDILTAF------VHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 690

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + V FP+S I         GVR      G
Sbjct: 691 QRVSG-DHIAVVGENRKMVVFPLSDIPEMT--RGKGVRLQKYKDG 732



 Score = 39.4 bits (90), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 11/161 (6%)

Query: 729 LAKGDQV-ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             +GD++ ++          +         + A          E   +  D   + +I  
Sbjct: 582 FKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQDILT 641

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
               +   K   +L VS +G G      +   + R GK +         ++   V+    
Sbjct: 642 AFVHDPAAK---LLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVS---- 694

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              D I +V +   ++  P+++I   +R  KGV +      
Sbjct: 695 --GDHIAVVGENRKMVVFPLSDIPEMTR-GKGVRLQKYKDG 732


>gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583]
 gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583]
          Length = 745

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 228/736 (30%), Positives = 370/736 (50%), Gaps = 60/736 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD+ +E+ I  + +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  + +  
Sbjct: 2   SDKIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  LI+GQGNFG++DGD  AA
Sbjct: 62  AQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDNAAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ + A  LL+ + ++ +DFR  Y+   +EP+VL   +PN+L NG  GIAVGMA
Sbjct: 122 MRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  + +I + D   + L + + GPDFPTG + +  +  I+ AY TGRG
Sbjct: 182 TSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R   H E  + +   IV+TEIPYQ+ K+ ++EK AEL+  +R+  + D++DES   
Sbjct: 242 SFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDESAE- 300

Query: 307 GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILKAFVAF 364
             R+V+  K      ++++  L++ T  +  F +N+  L   K     +L   L+ ++  
Sbjct: 301 DVRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWLEH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R+EV++RR+ + L +   R  +L G  IA  NLD+V++IIR    P+             
Sbjct: 361 RQEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEPKK------------ 408

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+E Q  AIL +RL  L  L   +IR E  +L  E 
Sbjct: 409 -----------------ELLTHFQLTENQAEAILNMRLRSLRKLEEFEIRKEFENLKAEE 451

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLD---MEDEDCIVRE 536
           ++   +L S  +   +I +E+  V+ +         RRT   +          +  I +E
Sbjct: 452 EKLQALLGSNVKQWQMISEEIKKVRKKFAPETSLGKRRTTFEDSPKRDVDDIYQAMIEKE 511

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA +        +  ++ D +   F   T   ++  S+ G
Sbjct: 512 PVTIVISEKGWM--------RALKGHLNDYKALSFKEGDCLKLAFPAFTTDKIVVVSTGG 563

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             +      LP G  +  G+ +  ++ ++    I T               ++  + +GN
Sbjct: 564 KFFTIGANTLPGG--RGHGEPIRILVDMDNEHDILTAF------VHNAQGKLLLVSSYGN 615

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
                 ++ I   R GK  M + S D++         + I +  +  + + FPI  I   
Sbjct: 616 GFIISETEVIANTRKGKQIMNVKSPDKVKLCIPVKG-DHIAVIGENRKMLIFPIEQIPEI 674

Query: 717 AGRNSVGVRGISLAKG 732
           +     GVR      G
Sbjct: 675 S--RGKGVRLQRYKDG 688



 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 47/167 (28%), Gaps = 9/167 (5%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           + +S  +GD +           D    +                               N
Sbjct: 534 KALSFKEGDCLK--LAFPAFTTDKIVVVSTGGKFFTIGANTLPGGRGHGEPIRILVDMDN 591

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +     +   +  +L VS  G G   S  +   + R GK I             +   
Sbjct: 592 EHDILTAFVHNAQGKLLLVSSYGNGFIISETEVIANTRKGKQIMNVK-----SPDKVKLC 646

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            PV   D I ++ +   ++  P+ +I   SR  KGV +        V
Sbjct: 647 IPVK-GDHIAVIGENRKMLIFPIEQIPEISR-GKGVRLQRYKDGVVV 691


>gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466]
 gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034]
 gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037]
 gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329]
          Length = 761

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 249/784 (31%), Positives = 402/784 (51%), Gaps = 68/784 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  +  D         +    +F  S G  Y
Sbjct: 507 VVLSEKGWV--------RHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMSEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A
Sbjct: 611 CKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++      + ++V+S  I L   A         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGKRKLGLKPADLENFRGERG 728

Query: 773 TSLK 776
               
Sbjct: 729 RRGS 732



 Score = 47.1 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  ++Q  L  S+ G+G      D    NRSGK +     +        V   
Sbjct: 585 SSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 693


>gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
 gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC
           51599]
          Length = 780

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/820 (31%), Positives = 390/820 (47%), Gaps = 81/820 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   II  +EE   G+T   +    + +YL YAI+ I  RA+PD+ DG KPV RRILF M
Sbjct: 1   MDTEIILDEEESTDGLT---LARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G+V+GKYHPHG++A YDA+ RMAQD+SLR  L++GQGNFGS 
Sbjct: 58  HEMGLGPAAKPVKSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  LLD++ + TV+F PNYDGS  EP +L AR P +L+NG  
Sbjct: 118 DGDGAAAMRYTEARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKN 239
           GIAV MAT IP+HNL EV    +A+I +P +  +ALM+I+ GPDFP G  I+  +  +  
Sbjct: 178 GIAVAMATEIPSHNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAE 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD---- 295
           AY +GRGSI +R   HIE+ +  + Q+VV E+P+ V+   +LE++ EL   K        
Sbjct: 238 AYRSGRGSIRVRARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKAL 297

Query: 296 --------------IADLRDESDRQ-GYRVVIELKRGASAD-VILNQLYRYTSLQSLFSV 339
                         +  +RDES R+   R+V E K       +++N L   TSL++  S+
Sbjct: 298 TPEQLQAKSQILNVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSI 357

Query: 340 NMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V L   K P + TL  IL+ ++ FR   V RR+ + L K  DR H+L G  + + N+D
Sbjct: 358 NLVMLGQDKRPRQKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   L+E Q   IL
Sbjct: 418 EVIRIIRESDEPKPA-----------------------------LMQAFGLTERQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    I  EL  L  E K+   +L S + L   + +E+ +        RRT
Sbjct: 449 EIRLRQLARLEAIRIEQELKELFDERKKLQGLLGSEATLKKAVIKEIEADIKTYGDDRRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I        +    V E + V +S  G+V        R+++  G        +  D + 
Sbjct: 509 LIEAAEKAAVE-ARQVEEPVTVIISAKGWV--------RSRQGHGHDARQFNFKTGDELA 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             + V T   +   +S G VY   V  LP       G  + + + L  G +I        
Sbjct: 560 GAYEVKTTDQLHALASNGRVYSIPVAGLPSARGD--GVPVTSFVELEAGSQILHAFA--- 614

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ---END 695
              +  +  V+ AT+ G        D+    ++GK  + L+  D  L          +  
Sbjct: 615 ---APADAGVLLATEKGFGLTCVAGDWQSRMKAGKHFLTLEEGDVPLPPVLFDASRTDAT 671

Query: 696 ILLTT------KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           ++  +        G+ + +P+S ++    +   GV  + L K +++  + +         
Sbjct: 672 VVCLSDGQGGGDKGRVLAYPVSEVKTLH-KGGRGVTLMGLEKKEKLRQVIVAADTGLVVT 730

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
                 K  S             T  +    ++    + R
Sbjct: 731 GTGRMAKPQSRTMSTREIAANTGTRGRKGKQLDPRWKDVR 770


>gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34]
 gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34]
          Length = 776

 Score =  549 bits (1413), Expect = e-153,   Method: Composition-based stats.
 Identities = 257/823 (31%), Positives = 385/823 (46%), Gaps = 78/823 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +    +DE  +     +++    + +YL YA++V+ GRA+P++ DG KPV RRILF M  
Sbjct: 5   DITFQADEPADS----LTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQA 60

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  + K VK AR+ GEV+GK+HPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DG
Sbjct: 61  MGLRADAKPVKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   +  LLD++   TVDF PNYDGS +EP +L AR P VL+NG  GI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGI 180

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
           AVGMAT IP HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+   + I   Y
Sbjct: 181 AVGMATEIPPHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK---------- 291
            +GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I E+   K          
Sbjct: 241 ESGRGSLKVRARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTP 300

Query: 292 -----RIVDIADLRDESDRQG----YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM 341
                +   ++ L    D  G     R+V E K +       +  L  +TSL+S   +N+
Sbjct: 301 EQTQLKTTMLSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINL 360

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  L  IL+ ++ FR   V RRT++ L K  DR H+L G  + + N+DEV
Sbjct: 361 VMIGTDGRPRQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEV 420

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A                                   LS+ Q   ILE+
Sbjct: 421 IRIIRESDEPKPA-----------------------------LIEAFRLSDRQAEDILEI 451

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPR 516
           RL +L  L    I  EL  L  E  E   +L S + +   I +E+     +       PR
Sbjct: 452 RLRQLARLEAIKIEQELAKLRDEQAELDVLLKSETMMRRRIIKEIEQDAKQYSPEDKDPR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  ++ E + V VS  G+V        R ++  G   S    +  D 
Sbjct: 512 RT-LIQEASRAAAEVKVIDEPVTVIVSGKGWV--------RTRQGHGHDASQFTFKAGDN 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  ++L F S G VY   V  LP G     G  +  ++ L  G +I      
Sbjct: 563 LYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGGRGD--GVPVTTLIDLAAGTQIAHTFAG 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-D 695
             ++       ++ AT  GN    K+ D I   ++GK  + LD  D +L+     +E   
Sbjct: 621 AAEQR------MLIATAGGNGFVTKVGDMIGRQKAGKAFVTLDEGDTLLAPTPIGEECTH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ +   +  ++V +     GV  + L   + ++    V              
Sbjct: 675 VACFSANGRLLLAGLDEVKVLSA-GGRGVILMELEPKETLMQAVAVGAPGLMISGIGVRG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
             +  Q+         +              +E   E     +
Sbjct: 734 GKVPPQKLAGKTLIPYVGKRARKGKAIEPRLKEVKIEPVKVGE 776


>gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396]
 gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396]
          Length = 759

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/725 (33%), Positives = 371/725 (51%), Gaps = 63/725 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+GI    + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ 
Sbjct: 6   EEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAAAKHK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA RY
Sbjct: 66  KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSAD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL ++G+ TVD+ PN+DGS  EP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIV 249
           P HNL EV   C+ ++D+P   ++ L E I GPDFP+G  I   R+ ++  Y TGRGS+ 
Sbjct: 185 PPHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRGSVK 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R     E      + IVVTE+P+QV+ A ++E+IA+ ++ K++  +ADLRDESD +   
Sbjct: 245 MRAKYTKE-----GQDIVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHENPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+VI  +     A+ ++  L+  T L+  + VN+  +    +P    L  +L+ ++ FR 
Sbjct: 300 RLVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVLLQEWLTFRT 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y L K   R H+L GL +A  N+DEV+ IIR    P   +  LM+R      
Sbjct: 360 QTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKP---KPVLMER------ 410

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+VQ   +L+ +L +L  L    IR E + L  E K+
Sbjct: 411 --------------------FGLSDVQAEYVLDTKLRQLARLEEMKIRAEQDELEKERKK 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
             DIL S ++L  ++K EL    +     RR+ IVE        + D I  E + V +S 
Sbjct: 451 LEDILGSEAKLRKLVKTELKQDMETFGDERRSPIVERKEAQAFSETDLIASEPVTVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        RA +       G+  +  D         +H + +F    G  Y     
Sbjct: 511 KGWV--------RAAKGHDIDAQGLSYKAGDKFLAAAKGRSHQNAIFLDDTGRSYCVAAH 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    Q           L       +   F       +++ VV A+  G     +L D
Sbjct: 563 SLPSARGQGE--------PLTGRVNPPSGAGFTHVLMGPDSMKVVLASDAGYGFVARLED 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
               NR+GK  + L     +       ++N   ++  +  G+ + FP+S +   A     
Sbjct: 615 LQSKNRAGKALISLPKGACVSPPILLERQNNPHLVAISNEGRMLVFPVSELPELA--KGK 672

Query: 723 GVRGI 727
           G + I
Sbjct: 673 GNKII 677


>gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
 gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42]
          Length = 784

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 242/778 (31%), Positives = 371/778 (47%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++              S+ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPTLDFSAPADHGDSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYV-------KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++           K AR+ G+V+G++HPHG+ + YDAL R+AQD++ R  LI+G
Sbjct: 61  DRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL + A  LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA++  P +  + L  ++ GPD+P G  I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIIS 240

Query: 234 RT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
               I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K 
Sbjct: 241 TDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKV 300

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASADV-ILNQLYRYTS 332
                 L  E                   S     R+VIE K G      ++  L  +TS
Sbjct: 301 KTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L++   +N+  +    +P + +L  +L+ ++ FR+  + RR+++ L+K  DR H+L G  
Sbjct: 361 LETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           + + N+DEV+ IIR +  P+ A                                  +LS+
Sbjct: 421 LVLLNIDEVIAIIRQADEPKAA-----------------------------LIARFHLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +    
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILANPASLRRLMVKEIEADAKL 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      +  E  ++ E + V VS  G+V        RA++  G        
Sbjct: 512 FGDARRTLIQAEKKAV-AEVKVLDEPVTVVVSEKGWV--------RARQGHGHEAGSFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T  +++ F S G VY   V  LP G     G+ +  ++ L  G +  
Sbjct: 563 KSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGGRGD--GQPITTLIELEAGTQPV 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SVE 688
                        N  ++ A   G    + +      NR GK  + L   + +       
Sbjct: 621 HYFA------GPANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAA 674

Query: 689 TCTQEN------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             +          +   +  G+ + F I+ +++   +   G+  I L   DQ+   A 
Sbjct: 675 FTSGSQPLAPATHVCCASVGGRVLTFEIAELKLME-KGGRGLMLIDLEPKDQLAGAAA 731


>gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
 gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3]
          Length = 755

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/769 (31%), Positives = 390/769 (50%), Gaps = 62/769 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WSKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSSRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           S+   +       + H      +    +     + +L   + +++T  +
Sbjct: 673 SIPAAEAAAGQDGLAHLFVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD     A            I       A   +          
Sbjct: 511 RSAKGHDIDAQGLSYKAGDS--WKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +   ++    + D   ++L ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 625 -PDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIISIPAAE 678


>gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901]
 gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901]
          Length = 748

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/759 (32%), Positives = 390/759 (51%), Gaps = 74/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +    +E+     + +    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTESTLVPYADEQ-----LPLKVFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQ 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL      LL +L + TV++ PN+DG+  EP VL AR P VL+NG
Sbjct: 116 D-DPKSFAAMRYTEARLSAFTEVLLSELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVVD  + +++NPD D   L E I GPD PT   +I  +  +
Sbjct: 175 TTGIAVGMATDIPPHNLREVVDATIHLLENPDADNAQLCEFIPGPDMPTDAEIITPKADL 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V   E+       IV+T +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 235 QKVYETGRGSMKMRAVWRKEEGD-----IVITALPHQVSGAKILEQIAAQMQAKKLPMVA 289

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + +N+  +    +P   +L
Sbjct: 290 DLRDESDHENPIRLVIVPRSNRIDQEAVMNHLFATTDLERSYRINLNMIGIDGRPGVKSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ +++FR   V RR ++ L+    R H+L GL IA  NLDEV+ IIR   +P   +
Sbjct: 350 REILQDWLSFRMVTVRRRLQHRLDWVERRLHLLDGLLIAFLNLDEVIHIIRTEDHP---K 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           ++LM+R                            LSE Q   IL+ RL +L  L    IR
Sbjct: 407 QKLMER--------------------------FELSEDQANYILDTRLRQLARLEEMKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
           +E   L  E  E   IL S  RL  +IK+ELL+V DE    RR+ +VE        + + 
Sbjct: 441 DEQQKLEKERDELQKILDSARRLKTLIKKELLAVVDEFGDARRSPMVERSEAQAFSETEL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R+ +      S +  +  D         +  + L  
Sbjct: 501 ISSEPVTVVLSEKGWI--------RSAKGHDIDPSALSYKAGDSFRVAARGKSSQATLLL 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ +   L+   G     ++         +   V+ A+
Sbjct: 553 DSTGRSYALPTHTLPSA--RGQGEPVTGRLNPPSGAVFEGLL------MGDDTQKVLLAS 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G      LSD    NRSGK  + + +   +L+ +    T  + +   +  G+ + FP+
Sbjct: 605 DAGYGFIASLSDLYTKNRSGKAMLSVPAGGRVLAPQLLETTDASWLAAFSNEGRLLAFPV 664

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
           S +   A     G + I++      ++ + V+++ +   
Sbjct: 665 SELPELA--RGKGNKIINIPAARVQSREEFVVALVVFNE 701



 Score = 40.2 bits (92), Expect = 1.9,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND- 851
           +    Q +L  S+ G+G   S  D    NRSGK      +  +   G ++A   +   D 
Sbjct: 593 MGDDTQKVLLASDAGYGFIASLSDLYTKNRSGK-----AMLSVPAGGRVLAPQLLETTDA 647

Query: 852 -QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRE 899
             +   S++G L+  PV+E+   +R  KG  I +       +++E VV++    E
Sbjct: 648 SWLAAFSNEGRLLAFPVSELPELAR-GKGNKIINIPAARVQSREEFVVALVVFNE 701


>gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 752

 Score =  548 bits (1412), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/769 (31%), Positives = 390/769 (50%), Gaps = 62/769 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WSKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           S+   +       + H      +    +     + +L   + +++T  +
Sbjct: 673 SIPAAEAAAGQDGLAHLFVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD     A            I       A   +          
Sbjct: 511 RSAKGHDIDAQGLSYKAGDS--WKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +   ++    + D   ++L ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 625 -PDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIISIPAAE 678


>gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
 gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3]
          Length = 762

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/745 (32%), Positives = 398/745 (53%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT   +   +  I+  Y  G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  K      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +FF S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAEGLSYKSGDNYLAHARGKSNQQAVFFGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   +++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMGEDEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K S+ +  NRSGK  + L +  E+++ +T      ++IL  T  G+ + FPI  +   A
Sbjct: 611 CKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEILAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      + ++V+S
Sbjct: 671 --KGKGNKIINIPAAKAKEREEVLS 693



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   EQ  L  S+ G+G      +    NRSGK +     +        +A  
Sbjct: 585 SSIRQVIMGEDEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 693


>gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47]
          Length = 825

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 262/762 (34%), Positives = 398/762 (52%), Gaps = 49/762 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE     I ++ +    Q+ YL Y+++VI  RA+PD+RDGLKPV RRIL+ M Q  ++
Sbjct: 22  PFDESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTMSQQRLD 81

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
              K+ KCA++ G+VMG YHPHG+++IY+AL RM+Q +SLR+ +I+G GNFGS+DGD  A
Sbjct: 82  ATAKHRKCAKVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAA 141

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECR+   A  +L DL   TV F+PNYDG+ +EPVVL +R P++LVNG  GIAVGM
Sbjct: 142 AMRYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGM 201

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--EIIRGPDFPTGAVILG-RTGIKNAYAT 243
           ATNIP HNL EV +  + ++ NP+I    L+  + I+GPDFPTG  I   +  ++  YAT
Sbjct: 202 ATNIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYAT 261

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G G+I +RGV+ + + S   + + +TEIP+ VNKAAM+E+IAELV   ++  + ++RD S
Sbjct: 262 GTGTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLS 321

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGI 357
             +  RV + LK+ A AD +L  LY++T LQ+ F+VN+  L   +      P+R  L  I
Sbjct: 322 -TEDIRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEI 380

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+ FR +V+  R    L     R H+L GLA+    LDE+++IIR S     A  ++
Sbjct: 381 LWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKI 440

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+R          +  +  +     +  +  L   QT AILEL+L RL  L  + + +EL
Sbjct: 441 MKRFP--------VKELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDEL 492

Query: 478 NSLGIEIKECLDILSSRSR------LLGIIKQELLSVKDELDTP----RRTRIVEGLL-- 525
                 + E   +L+             IIK+EL S+  +        RR+ IV      
Sbjct: 493 KKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEV 552

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +  +ED IV ED  V V+  G+VKR       ++           +R  D V      +T
Sbjct: 553 EYTEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKS---------RLRQGDAVLACVAGNT 603

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS--------LNQGERITTIMPFP 637
            T++ FFSSLG  Y  ++  +P  +        +            L+   RI   +   
Sbjct: 604 RTTLAFFSSLGVCYTARMIDIPASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISED 663

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDI 696
              + +   + + A+  G   R  L  F + +    +   ++     I+ V        +
Sbjct: 664 PKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETV 723

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           L  +   + +  P   I   +G    GV  + LA  D+++  
Sbjct: 724 LAVSADARAMVCPADEINYLSG-AGKGVLLLKLAASDKLLGF 764



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 26/261 (9%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T  G V+R       Q   +     +L   D +L+         +   + LG C   
Sbjct: 567 VMVTVDGWVKR-------QKQIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTA 619

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY---------MK 756
            +  I    G      +      G+++I   SM   +  D   D +  Y           
Sbjct: 620 RMIDIPASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAAST 679

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A R  +    E  T      +     +           + +L VS         + +
Sbjct: 680 DGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADE 739

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LVSDKGTLIRVPVNEIRIASR 875
               + +GKG+    ++       L+   P   +  ++ +V+++G    V   + R  SR
Sbjct: 740 INYLSGAGKGVLLLKLAA---SDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTAKYRTTSR 796

Query: 876 ATKGVVIFSTAKDERVVSVER 896
              G       K+ ++  + R
Sbjct: 797 ---GGRGIELQKNGKIAEIVR 814


>gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22]
 gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
 gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342]
 gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22]
 gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55]
          Length = 752

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/769 (31%), Positives = 389/769 (50%), Gaps = 62/769 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WSKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D    E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADADAFGDERRSPLHEREEAKAMSEHDMQPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MESDDRKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           S+   +       + H      +    +     + +L   + +++T  +
Sbjct: 673 SIPAAEAAAGQDGLAHLFILPPQSTLTIHVGKRKIKLRPEELQKVTGER 721



 Score = 45.6 bits (106), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD     A            I       A   +          
Sbjct: 511 RSAKGHDIDAQGLSYKAGDS--WKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  ++ +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMESDDRKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +   ++    + D   ++L ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 625 -PDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIISIPAAE 678


>gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
 gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134]
          Length = 780

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 257/792 (32%), Positives = 377/792 (47%), Gaps = 78/792 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +     +E  +     +++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +
Sbjct: 5   DITFQPEEPADS----LTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHE 60

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DG
Sbjct: 61  MGLRADAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDG 120

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   +  LLD++ + TVDF  NYDGS +EP +L AR P VL+NG  GI
Sbjct: 121 DGAAAMRYTEARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGASGI 180

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAY 241
           AVGMAT +P HNL EV    VA+I NP+I L  L+ ++ GPD+P G  I+     I   Y
Sbjct: 181 AVGMATEVPPHNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQIY 240

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            +GRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       L  
Sbjct: 241 ESGRGSLKVRARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKALTP 300

Query: 302 E-------------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNM 341
           E                         R+V E K +       +  L  +TSL+S   VN+
Sbjct: 301 EQQQLKASVLAVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPVNL 360

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  L  IL+ ++ FR   V RRT+Y L K  DR H+L G  + + N+DEV
Sbjct: 361 VMIGTDGRPRQKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNIDEV 420

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A   LM+R                            LS+ Q   ILE+
Sbjct: 421 IRIIRESDEPKPA---LMER--------------------------FGLSDRQAEDILEI 451

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL----DTPR 516
           RL +L  L    I  EL  L  E  +   +L S + +   I +E+ +   +       PR
Sbjct: 452 RLRQLARLEAIRIEKELKDLREEQADLDVLLKSDTMMRRRIIKEIETDAKQYSPEDKDPR 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT I E       E  +V E + V VS  G+V        R ++  G        +  D 
Sbjct: 512 RTLIQEERRA-AAEVRVVDEPVTVVVSQKGWV--------RTRQGHGHDAQQFTFKAGDA 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           + D F   T   +L F + G VY   V  LP G     G  L  ++ L  G +I      
Sbjct: 563 LYDTFECRTIDVLLAFGTNGRVYSVPVASLPGGRGD--GVPLTTLIELQPGSQIAHTFAG 620

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQEND 695
             ++       ++ AT+ GN    K++D     + GK  + LD  D  L      ++   
Sbjct: 621 SAEQR------MLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDGDAPLTPAPIASEATH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ +   +  ++V +     GV  + L   ++++    V              
Sbjct: 675 VACLSGNGRLLLVALDEVKVLSA-GGRGVILMELEPKEKLLQAVGVGAPGLVVSGTTPRG 733

Query: 756 KHMSAQRRLISG 767
                Q+   + 
Sbjct: 734 GKPDTQKLAGAN 745



 Score = 42.9 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR--SGKGIRATDVSKINEIGALVA 843
           S+         EQ +L  ++ G G  T   D  ++ R   GK     D    +    L  
Sbjct: 612 SQIAHTFAGSAEQRMLIATQGGNGFLTKIAD--MTGRQKGGKSFLTLD----DGDAPLTP 665

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               ++   +  +S  G L+ V ++E+++ S   +GV++      E++
Sbjct: 666 APIASEATHVACLSGNGRLLLVALDEVKVLSAGGRGVILMELEPKEKL 713


>gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15]
          Length = 781

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 251/754 (33%), Positives = 365/754 (48%), Gaps = 75/754 (9%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  +   ++++    + +YL YA++V+ GRA+P++ DG KPV RRILF M +MG+  + K
Sbjct: 9   DPREPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAK 68

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS DGD  AA RY
Sbjct: 69  PVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRY 128

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL++L + TVDF PNYDGS  EP ++ AR P VL+NG  GIAVGMAT I
Sbjct: 129 TEARLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGASGIAVGMATEI 188

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIV 249
           P+HNL EV    VA+I +  +    L + I GPDFP G  I+     I   Y TGRGS+ 
Sbjct: 189 PSHNLREVATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQIYETGRGSLK 248

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE------- 302
           +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       L  E       
Sbjct: 249 VRARWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQT 308

Query: 303 ------------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-K 348
                             R+V E K +        N L  +TSL+S  ++N+V +    +
Sbjct: 309 MLGLLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGR 368

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P +  L  IL+ ++ +R   V RRT++ L K  DR H+L G  + +  ++EV+RIIR S 
Sbjct: 369 PRQKGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESD 428

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
            P+ A                                   LS+ Q   ILE+RL +L  L
Sbjct: 429 EPKAA-----------------------------LIQAFNLSDRQAEDILEIRLRQLARL 459

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
               I  EL +L  E  E   +L S + +   I +E+ +   +    RRT I E      
Sbjct: 460 EAIKIEQELKNLREEQAELDVLLKSETMMRRRIVKEIETDAKQFGDDRRTLIQEERRA-A 518

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            E  +V E + V VS  G+V        R ++  G   +    +  D + D F   T  +
Sbjct: 519 AEVKVVDEPVTVIVSQKGWV--------RTRQGHGHDATQFGFKAGDTLYDTFECRTTDA 570

Query: 589 VLFFSSL-----GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +L F +      G VY   V  LP G     G  L  ++ L  G  I   +       S 
Sbjct: 571 LLIFGTRDDKGTGRVYSVAVANLPGGRGD--GVPLTTLIELAPGTHIAHTLA------SH 622

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKL 702
               V+ +T+ GN    K+ D +   + GK  + LD  D+        ++       +  
Sbjct: 623 AEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQPNKPAAVPEDAYGAACLSAN 682

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           G+ + FP+S ++  A     GV  + L K + + 
Sbjct: 683 GRLLLFPLSEVKTLAS-GGRGVILMELEKNETLA 715


>gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
 gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002]
          Length = 773

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 248/806 (30%), Positives = 380/806 (47%), Gaps = 70/806 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++ +    E       +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRI F M +
Sbjct: 4   DNTLDLFNEPPADGDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFAMNE 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DG
Sbjct: 64  MGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   A  LL ++ + TVDF PNYDGSF EP VL AR P VL+NG  GI
Sbjct: 124 DGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGASGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAY 241
           AVG+AT IP+HNL EV    VA+I +P +    LM+ + GPDFP G  I+     I  AY
Sbjct: 184 AVGLATEIPSHNLREVASAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E    K  +    L  
Sbjct: 244 ETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKTLTP 303

Query: 302 E-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFSVNM 341
           E                         R+V E K         +N L  +TSL+S   +NM
Sbjct: 304 EQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNM 363

Query: 342 VAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV
Sbjct: 364 VMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEV 423

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A                                   L++ Q   ILE+
Sbjct: 424 IRIIRESDEPKVA-----------------------------LMAAFGLTDRQAEDILEI 454

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L +  I  EL  L  E  +  ++L S   +   + +E+ +   +    RRT +
Sbjct: 455 RLRQLARLEKIKIEKELAELREEKAKLEELLGSEPAMKRQLIKEIEADAKQYGDERRT-L 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           ++       E  +V E + V VS  G+V        RA +  G   +G   +  D +   
Sbjct: 514 IQQEKRATFEARVVDEPVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDGLYAA 565

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F   T  +++ + S G VY   V +LP G     G  + +++ L  G             
Sbjct: 566 FQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGD--GVPVTSLIELESGSH------LMHYY 617

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLT 699
           ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+      +   +   
Sbjct: 618 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAAQVACL 677

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           +   
Sbjct: 678 SSGGRLLVFGLDEMKTLSG-GGRGVTLMALDDKETLVQALAINKAGVMLIGTRRGGRVDE 736

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNI 785
            +              +   + +  +
Sbjct: 737 EKLAGAELAAHVGKRARKGRTPDSKM 762



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +  A  +L  G  + +          G+ 
Sbjct: 553 GFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 613 LMHYYA--ASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAA----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + D  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 MLPDAAQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMALDDKETLV 713


>gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
 gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1]
          Length = 825

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 261/762 (34%), Positives = 400/762 (52%), Gaps = 49/762 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             DE     I ++ +    Q+ YL Y+++VI  RA+PD+RDGLKPV RR+L+ M  + ++
Sbjct: 22  PFDESLLAEIQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLD 81

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            + K+ KCA++ G+VMGKYHPHG+++IY+AL RM+Q +SLR+ +I+G GNFGS+DGD  A
Sbjct: 82  SSAKHSKCAKVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAA 141

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTECR+   A  +L DL   TV F+PNYDG+ +EPVVL +R P++LVNG  GIAVGM
Sbjct: 142 AMRYTECRMTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGM 201

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALM--EIIRGPDFPTGAVILG-RTGIKNAYAT 243
           ATNIP HNL EV +  + ++ NP+I    L+  + I+GPDFPTG  I   +  ++  YAT
Sbjct: 202 ATNIPPHNLKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYAT 261

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G G+I +RGV+ + + S   + + +TEIP+ VNKAAM+E+IAELV   ++  + ++RD S
Sbjct: 262 GTGTIKLRGVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLS 321

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK------PERFTLIGI 357
             +  RV + LK+ A AD +L  LY++T LQ+ F+VN+  L   +      P+R  L  I
Sbjct: 322 -TEDIRVDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEI 380

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  F+ FR +V+  R    L     R H+L GLA+    LDE+++IIR S     A  ++
Sbjct: 381 LWYFLHFRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKI 440

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M+R          +  +  +     +  +  L   QT AILEL+L RL  L  + + +EL
Sbjct: 441 MKRFP--------VKELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDEL 492

Query: 478 NSLGIEIKECLDILSSRSR------LLGIIKQELLSVKDELDTP----RRTRIVEGLL-- 525
                 + E   +L+             IIK+EL S+  +        RR+ IV      
Sbjct: 493 KKKRKRVDEINKLLADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEV 552

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +  +ED IV ED  V V+  G+VKR       ++           +R  D V      +T
Sbjct: 553 EYTEEDFIVAEDCHVMVTVDGWVKRQKQIADPSKS---------RLRQGDAVLACVAGNT 603

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS--------LNQGERITTIMPFP 637
            T++ FFSSLG  Y  ++  +P  +        +            L+   RI   +   
Sbjct: 604 RTTLAFFSSLGVCYTARMIDIPASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISED 663

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDI 696
              + +   + + A+  G   R  L  F + +    +   ++     I+ V        +
Sbjct: 664 PKGNYYPATHALAASTDGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETV 723

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
           L  +   + +  P   I   +G    GV  + LA  D+++  
Sbjct: 724 LAVSADARAMVCPADEINYLSG-AGKGVLLLKLAASDKLLGF 764



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 81/261 (31%), Gaps = 26/261 (9%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
           V  T  G V+R       Q   +     +L   D +L+         +   + LG C   
Sbjct: 567 VMVTVDGWVKR-------QKQIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTA 619

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVI---SMAIVLHADADYDERICY---------MK 756
            +  I    G      +      G+++I   SM   +  D   D +  Y           
Sbjct: 620 RMIDIPASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAAST 679

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A R  +    E  T      +     +           + +L VS         + +
Sbjct: 680 DGYALRFGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADE 739

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII-LVSDKGTLIRVPVNEIRIASR 875
               + +GKG+    ++       L+   P   +  ++ +V+++G    V   + R  SR
Sbjct: 740 INYLSGAGKGVLLLKLAA---SDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTAKYRTTSR 796

Query: 876 ATKGVVIFSTAKDERVVSVER 896
              G       K+ ++  + R
Sbjct: 797 ---GGRGIELQKNGKIAEIVR 814


>gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY]
 gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY]
          Length = 784

 Score =  548 bits (1411), Expect = e-153,   Method: Composition-based stats.
 Identities = 242/778 (31%), Positives = 371/778 (47%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++              S+ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPTLDFSAPADHGDSLELAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYV-------KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++           K AR+ G+V+G++HPHG+ + YDAL R+AQD++ R  LI+G
Sbjct: 61  DRMGLGYSGPNRNVAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFNQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL + A  LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLTRIAGLLLDEIDMGTVDFVPNYDGSTQEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA++  P +  + L  ++ GPD+P G  I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREVADACVALVKKPQLSDEELFALVPGPDYPGGGQIIS 240

Query: 234 RT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
               I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K 
Sbjct: 241 TDADIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKV 300

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASADV-ILNQLYRYTS 332
                 L  E                   S     R+VIE K G      ++  L  +TS
Sbjct: 301 KTGKKALTQEQTQLKAALLALLDGVRDESSKDAPVRLVIEPKTGKVPQQDLITALLAHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L++   +N+  +    +P + +L  +L+ ++ FR+  + RR+++ L+K  DR H+L G  
Sbjct: 361 LETSAPINLTMVGLDGRPVQKSLREMLQEWIDFRQTTITRRSQHRLDKVLDRIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           + + N+DEV+ IIR +  P+ A                                  +LS+
Sbjct: 421 LVLLNIDEVIAIIRQADEPKAA-----------------------------LIARFHLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +    
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILANPASLRRLMAKEIEADAKL 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      +  E  ++ E + V VS  G+V        RA++  G        
Sbjct: 512 FGDARRTLIQAEKKAV-AEVKVLDEPVTVVVSEKGWV--------RARQGHGHEAGSFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T  +++ F S G VY   V  LP G     G+ +  ++ L  G +  
Sbjct: 563 KSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGGRGD--GQPITTLIELEAGTQPV 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SVE 688
                        N  ++ A   G    + +      NR GK  + L   + +       
Sbjct: 621 HYFA------GPANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAA 674

Query: 689 TCTQEN------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             +          +   +  G+ + F I+ +++   +   G+  I L   DQ+   A 
Sbjct: 675 FTSGSQPLAPATHVCCASVGGRVLTFEIAELKLME-KGGRGLMLIDLEPKDQLAGAAA 731


>gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
 gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473]
          Length = 757

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/738 (32%), Positives = 370/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    VA+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVVALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKILEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDMEQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V +R  Y L+K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 MAILTEWLEFRRDTVRKRLNYRLDKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFGISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E   L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQEELAKERDQLQALLASERKLNTLIKKEIQADALAYGDERRSPLTERGEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       SD +  NR+GK  + L    + L+       +D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFSDLVAKNRAGKAMISLPENAKALTPLEIHGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 DLPELS--KGKGNKIVSI 678



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV--- 724
           +    A  L   DE  S  T   E      ++       P++ +    G  R++ G    
Sbjct: 466 KKEIQADALAYGDERRSPLTERGEA--KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDID 523

Query: 725 -RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             G+S   GD   + A                 +      L S   +        +   G
Sbjct: 524 PSGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPG 583

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E+    +   +Q +L  S+ G+G   +  D    NR+GK + +   +         A
Sbjct: 584 ATIEQVL--MAPDDQKLLMASDAGYGFVCTFSDLVAKNRAGKAMISLPENAK-------A 634

Query: 844 VFPVN---DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + P+     +D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 635 LTPLEIHGPDDMLLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris]
 gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris]
          Length = 751

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 244/757 (32%), Positives = 373/757 (49%), Gaps = 69/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +       +      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  KATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G GSI +R +   EK     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDE
Sbjct: 240 SGNGSIKMRAIYAQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI  +      + +++ L+  T L+  + VN   +    KP    L+ IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLTILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P+        
Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQ------- 407

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                 G      L+E Q  AILE++L  L  L    +R EL+ 
Sbjct: 408 ----------------------GLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E       L+S S L  ++K+E+   +DE   PRR+ I+        ++ED +  E 
Sbjct: 446 LSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  T+  VLFF   G 
Sbjct: 506 ITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGK 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY      LP    Q           L         + F           V+ AT  G  
Sbjct: 558 VYSLPGHALPSARGQGE--------PLTGKLNPAEGILFEAIVGGEPEQKVLLATDSGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              K+ D    NR+GK  +KL     IL            +   T +G+ + F +  +  
Sbjct: 610 FIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +     G + IS+      ++ + ++ M ++   D+
Sbjct: 670 LS--RGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS 704



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+  +  +                +      L S   +    
Sbjct: 517 RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + E         EQ +L  ++ G+G      D  + NR+GK      +S+
Sbjct: 577 TGKLNPAEGILFEAIVG--GEPEQKVLLATDSGYGFIAKIEDLYVKNRNGK--ACIKLSE 632

Query: 835 INEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TA 886
            +    ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +
Sbjct: 633 NS---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSR-GKGNKLISIPVAKAVS 688

Query: 887 KDERVVSVERIRESE 901
           ++E +V ++ +  ++
Sbjct: 689 REEYIVDMQVLTTND 703


>gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 752

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/732 (32%), Positives = 382/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ + M+N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815]
 gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815]
          Length = 773

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/769 (31%), Positives = 377/769 (49%), Gaps = 71/769 (9%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFTEPAAPEGDVLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P I    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVAMIRHPKITHAELMQLVPGPDFPGGGQIISSEAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+V+TE+P   +   +LE+I E    K  +    
Sbjct: 241 QAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKS 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S  +
Sbjct: 301 LTPEQLQTKQTLLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAT 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  +  +L  ++ FR   V RR+++ LNK  +R H+L G  I   N+
Sbjct: 361 LNLVMVGADGRPRQKGIGEMLHEWIGFRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                                   LS+ Q   I
Sbjct: 421 DEVIRIIRESEEPKAA-----------------------------LIEAFKLSDRQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I  EL+ L  E  +  ++L S   +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEAIKIEKELSELRDEKAKLEELLGSEPAMKRLLIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 T-LIQQEKRATFEARVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V +LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDMLIAWGSKGRVYSVAVSQLPGGRGD--GVPVTSLIELESGTH------LM 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++     ++ A+ +G     K+ D +   ++GK  M +D     L+      +   +
Sbjct: 615 HYYAASAEQALLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGATPLAPMPMLPDATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
              +  G+ + F +  ++  +G    GV  ++L   + +     + +A 
Sbjct: 675 ACLSGGGRLLVFGLDEMKTLSG-GGRGVILMALDPNEVLKQALAISNAG 722


>gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
 gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12]
          Length = 777

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/815 (29%), Positives = 373/815 (45%), Gaps = 76/815 (9%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+E   +  D   E    S+++ D  + +YL YAI+V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+G++HPHG+ A YDAL R++QD++ R  LI+GQGNFGS
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++   T DF PNYDGS  EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT IP HNL EV   CVA++ NP ++L   + ++ GPDF TG   I     I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AYA GRGS+ +R    +E+ +  + Q+V+ E+P+  +   +LE+I EL   K       
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E +         +N L   TSL++   
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    KP +  L+ IL+ +VA+R + V RR+K+ L +   R H+L G    + NL
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+  IR S +P  A                                   L+E+Q   I
Sbjct: 421 DEVIETIRNSDDPRPA-----------------------------LMARFDLTELQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L++RL +L  L    I  EL +   E  E   +L+    +   I  E+ +   +    RR
Sbjct: 452 LDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTRRIISEIEADAKQFGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I      +  E  +V E + V VS  G++        R Q+  G   S +  +  D +
Sbjct: 512 TLIQAEQRAV-AEVKVVDEAVTVIVSQKGWL--------RVQKGHGLVLSALTFKPGDAL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   +   ++   S G  Y   V  LP G     G+ + + + L  G +    +   
Sbjct: 563 YATFECRSVDPLVVLGSDGRAYSMDVADLPGGRGD--GQPVTSFIELAPGTQALHYLA-- 618

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-- 695
                     ++  T  G      +SD +   R+GK  + L+  D +        + D  
Sbjct: 619 ----GARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTLEDGDTLQRPLVLDTDADGS 674

Query: 696 ----ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
               +   +  G+ + +P + ++  A R   G+  ++L   + + S+A +          
Sbjct: 675 PVGRLATLSADGRLLLYPAAEVKTLA-RGGRGITLMALDAKETLQSVAQLAAERDALLVS 733

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
                       L +         +     +  ++
Sbjct: 734 GKGRGGTERSATLSAAQQTAYVGKRARRGRKLEVT 768



 Score = 38.6 bits (88), Expect = 5.2,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 19/184 (10%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            ++   GD + +         D    +       +                         
Sbjct: 553 ALTFKPGDALYA--TFECRSVDPLVVLGSDGRAYSMDVADLPGGRGDGQPVTSFIELAPG 610

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD---------VSKIN 836
           ++        +   +L  + +GFG  T   D     R+GK     +         V   +
Sbjct: 611 TQALHYLAGARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTLEDGDTLQRPLVLDTD 670

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G+ V             +S  G L+  P  E++  +R  +G+ + +    E + SV +
Sbjct: 671 ADGSPVGRLAT--------LSADGRLLLYPAAEVKTLARGGRGITLMALDAKETLQSVAQ 722

Query: 897 IRES 900
           +   
Sbjct: 723 LAAE 726


>gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 758

 Score =  547 bits (1410), Expect = e-153,   Method: Composition-based stats.
 Identities = 242/758 (31%), Positives = 386/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQRFAISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+L+        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEILADAAAYGDDRRSPLTEREEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAACGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++       + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGANIEHVL------MAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISLAK------GDQVISMAIVLH 743
            +   +     G + +S+         D+++ + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPAADAATGKDRLVWLFVLPP 698



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 20/180 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPSGLSYKAGDSFRAAACGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G  +      +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 575 TGKLTLPPG--ANIEHVLMAADDQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N   AL  +     +D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 630 ENAK-ALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
 gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909]
          Length = 755

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 242/815 (29%), Positives = 388/815 (47%), Gaps = 69/815 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFAISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L+       +D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKALTPLEIHGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +   +     G + +S+           +        +    +     +  L   D ++
Sbjct: 663 DLPELS--KGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLTLRPEDLQK 720

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
             + +           +R   + +    + T +E+
Sbjct: 721 FRAERGRKGSPLPRGLQRIDRVDVDAPPVPTNTEE 755



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 71/221 (32%), Gaps = 37/221 (16%)

Query: 692 QENDILLTTKLGQCVRFPISAIRV---------FAG--RNSVGV----RGISLAKGDQVI 736
            ++     T+ G+        I             G  R++ G      G+S   GD   
Sbjct: 477 GDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFR 536

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           + A  +              +      L S   +        +   G   E+    +   
Sbjct: 537 AAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL--MAPD 594

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN---DNDQI 853
           +Q +L  S+ G+G   +  D    NR+GK          N      A+ P+     +D +
Sbjct: 595 DQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLPENAK----ALTPLEIHGPDDML 647

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           + ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 648 LSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|330980281|gb|EGH78416.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 806

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 303/768 (39%), Positives = 437/768 (56%), Gaps = 52/768 (6%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMA
Sbjct: 1   MRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG 
Sbjct: 61  TNIPPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGR 120

Query: 248 IVIRGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           I +R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+
Sbjct: 121 IYMRARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDK 180

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R
Sbjct: 181 DGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHR 240

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S
Sbjct: 241 REVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESS 300

Query: 426 DIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            + ++++     S             +G  +LS  Q +AILELRL RLTGL  + +  E 
Sbjct: 301 AVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEY 360

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+
Sbjct: 361 QEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEE 420

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            VVT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G 
Sbjct: 421 RVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGK 480

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS--------------- 642
           VY  K + +P  S  ARG+ L+N+L L+ GE ITT++P   +                  
Sbjct: 481 VYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELD 540

Query: 643 ---------------------WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR 681
                                    ++  +T +G V++  L  F +   SG IA++LD  
Sbjct: 541 DAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEG 600

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D ++S      E +I+L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I 
Sbjct: 601 DILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIP 659

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                            +A              +   S+          Q L  +E  I+
Sbjct: 660 EEGSQILTASERGYGKRTAISEFPEYKRGGQGGIAMVSNERNGRLVGAVQVLDGEE--IM 717

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +S++G   RT   +     R+ +G+    ++   +   LV +  V +
Sbjct: 718 LISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEK---LVGLERVQE 762



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 97/270 (35%), Gaps = 15/270 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 546 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 603

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 604 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 657

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 658 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGGIAMVSNERNGRLVGAVQVLDGE 714

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 715 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 773

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                        D        + +S E  
Sbjct: 774 ELVDGVIVDAAEVDDAGEGLQADAASDEDE 803


>gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 752

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/722 (32%), Positives = 371/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLTFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+                   
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPK------------------- 400

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E N L  E  +   I
Sbjct: 401 ----------PVLMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D    E + + +S  G+V
Sbjct: 451 LASERKMNTLLKKELQADADAFGDDRRSPLHEREEAKAMNEHDMQPSEPVTIVLSQSGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKAGDSFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MEADDQKLLLASDAGYGFICTFNDLVSR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKAMISLPDNAHVMPPLVVENESDMLLAITSAGRMLMFPVSDLPELS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLSYKAGDSFKAA--VKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK + +   + 
Sbjct: 569 PLTGKLTLPPGATVDHMLMEADDQKLLLASDAGYGFICTFNDLVSRNRAGKAMISLPDNA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 +V     N++D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 629 HVMPPLVVE----NESDMLLAITSAGRMLMFPVSDLPELSK-GKGNKIINIPSAE 678


>gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
 gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1]
          Length = 773

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 255/812 (31%), Positives = 387/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDAPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LYAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDA 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I +AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIASAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  +TSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            NLDEV+RIIR S  P+ A                                   L+E Q 
Sbjct: 418 LNLDEVIRIIRESDEPKAA-----------------------------LMSAFGLTERQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D     L+        
Sbjct: 613 -LMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGIDEMKALSG-GGRGVTLMALDDKETLVQALAIDPAGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + +  +
Sbjct: 731 GGKVQDETLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G S   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--ASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGIDEMKALSGGGRGVTLMALDDKETLV 713


>gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044]
 gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 752

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/769 (31%), Positives = 389/769 (50%), Gaps = 62/769 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WSKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+                   
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPK------------------- 400

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 401 ----------PPLMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           S+   +       + H      +    +     + +L   + +++T  +
Sbjct: 673 SIPAAEAAAGQDGLAHLFVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD     A            I       A   +          
Sbjct: 511 RSAKGHDIDAQGLSYKAGDS--WKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +   ++    + D   ++L ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 625 -PDNAHVMPPLVIEDESDMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIISIPAAE 678


>gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1]
          Length = 752

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAVIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       SD +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFSDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +  +    ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPL--HEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFSDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357]
          Length = 749

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 122 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 182 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 242 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 296

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 297 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 357 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 399

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 400 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 448 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 508 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 559

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 560 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 611

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 612 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 669

Query: 728 SL 729
           ++
Sbjct: 670 NI 671



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 508 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 565

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 566 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 621

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 622 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 675


>gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
 gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby]
          Length = 751

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 244/757 (32%), Positives = 373/757 (49%), Gaps = 69/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +       +      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  KATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G GSI +R +   EK     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDE
Sbjct: 240 SGNGSIKMRAIYAQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI  +      + +++ L+  T L+  + VN   +    KP    L+ IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P+        
Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQ------- 407

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                 G      L+E Q  AILE++L  L  L    +R EL+ 
Sbjct: 408 ----------------------GLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E       L+S S L  ++K+E+   +DE   PRR+ I+        ++ED +  E 
Sbjct: 446 LSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  T+  VLFF   G 
Sbjct: 506 ITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGK 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY      LP    Q           L         + F           V+ AT  G  
Sbjct: 558 VYSLPGHALPSARGQGE--------PLTGKLNPAEGVLFEAIVGGEPEQKVLLATDSGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              K+ D    NR+GK  +KL     IL            +   T +G+ + F +  +  
Sbjct: 610 FIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +     G + IS+      ++ + ++ M ++   D+
Sbjct: 670 LS--RGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS 704



 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+  +  +                +      L S   +    
Sbjct: 517 RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + E         EQ +L  ++ G+G      D  + NR+GK      +S+
Sbjct: 577 TGKLNPAEGVLFEAIVG--GEPEQKVLLATDSGYGFIAKIEDLYVKNRNGK--ACIKLSE 632

Query: 835 INEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TA 886
            +    ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +
Sbjct: 633 NS---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSR-GKGNKLISIPVAKAVS 688

Query: 887 KDERVVSVERIRESE 901
           ++E +V ++ +  ++
Sbjct: 689 REEYIVDMQVLTTND 703


>gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
 gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99
           Alcoy]
          Length = 751

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 372/757 (49%), Gaps = 69/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +       +      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  KATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G GSI +R +   EK     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDE
Sbjct: 240 SGNGSIKMRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI  +      + +++ L+  T L+  + VN   +    KP    L+ IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P+        
Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQ------- 407

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                 G      L+E Q  AILE++L  L  L    +R EL+ 
Sbjct: 408 ----------------------GLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E       L+S S L  ++K+E+   +DE    RR+ I+        ++ED +  E 
Sbjct: 446 LSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDLRRSPIITREDSQALKEEDILPNEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  T+  VLFF   G 
Sbjct: 506 ITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGK 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY      LP    Q           L         + F           V+ AT  G  
Sbjct: 558 VYSLPGHALPSARGQGE--------PLTGKLNPAEGVLFEAIVGGEPEQKVLLATDSGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              K+ D    NR+GK  +KL     IL            +   T +G+ + F +  +  
Sbjct: 610 FIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +     G + IS+      ++ + ++ M ++   D+
Sbjct: 670 LS--RGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS 704



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+  +  +                +      L S   +    
Sbjct: 517 RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + E         EQ +L  ++ G+G      D  + NR+GK      +S+
Sbjct: 577 TGKLNPAEGVLFEAIVG--GEPEQKVLLATDSGYGFIAKIEDLYVKNRNGK--ACIKLSE 632

Query: 835 INEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TA 886
            +    ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +
Sbjct: 633 NS---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSR-GKGNKLISIPVAKAVS 688

Query: 887 KDERVVSVERIRESE 901
           ++E +V ++ +  ++
Sbjct: 689 REEYIVDMQVLTTND 703


>gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15]
          Length = 752

 Score =  547 bits (1409), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASEHKMNSLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|71893388|ref|YP_278834.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
 gi|71851515|gb|AAZ44123.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae J]
          Length = 846

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/814 (27%), Positives = 394/814 (48%), Gaps = 44/814 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    + +  +   +   ++ Y+  VI  RAIPD++DGLKPV RRIL+ M Q+G++ +K
Sbjct: 2   NKSLDSVINSQLEKILAEKFIRYSKYVIQQRAIPDVKDGLKPVQRRILYSMWQLGLKNSK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+++IYDAL R+AQ+W +   L+E  GN GS+D DPPAA R
Sbjct: 62  NYKKSARVVGDVIGKYHPHGDSSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + +  LL+ + K+ V F PN+D S +EP +L A +PN+L+NG  GIA G AT 
Sbjct: 122 YTEVRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + +I NP I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I 
Sbjct: 182 IPPHNLGEVIDAAILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I     I +    +  I +T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  
Sbjct: 242 ISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDVKIYGIKNVIDQSDQNGVS 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IEL++  + D+I+N L + T LQ  +S N VA+    P+  ++  ++  ++    ++ 
Sbjct: 301 ILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIK 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +    + L K + R  ++ G        DEV+++IR S N                 + D
Sbjct: 361 LAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDN------------SKVGVVND 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI                  S+ Q  AI  +RL RL+ + +     E  +L   I +   
Sbjct: 409 LIKF-------------FNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNITKFKK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTR--IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           ++ ++      +   L   K     PR+TR    +  + +  ++ +  E     ++  G 
Sbjct: 456 LIENKDEFDKNLINMLTDFKKHHGKPRKTRIIDSDIKIKINKDELVKDEFFYFWITKSGL 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++ +     +           + + DF     I++     +F ++ G +    V ++P
Sbjct: 516 YKKLDI-----KNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             + +     L   L +   ++I   +     +S  ++ +++F +K    +R  L   ++
Sbjct: 571 ELNLKNSPNNLKITLGIPNNQQI---LSVFFADSFESSQFLIFISKFSFAKRMNLDQLMK 627

Query: 668 INRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I +     + +    DE++SV    +  +I+L T   + ++  IS I     RNS G++ 
Sbjct: 628 IKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEI-PIYTRNSTGIKI 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
               K + + +   +  +++                 L  G+                  
Sbjct: 687 FRHRKNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGNKILTPKNFKTKLDFSLSP 746

Query: 787 EERCQELKLKEQFILTVSEKGFG-KRTSSYDFRI 819
           +      +      L + E G G K  S  DFR 
Sbjct: 747 KSIIIYNEN-----LQIFEFGEGLKIFSLNDFRK 775



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 98/300 (32%), Gaps = 26/300 (8%)

Query: 609 GSPQARGKALINILSLNQGERITTIMP----FPEDESSWNNLYVVFATKHGNVRRNKLSD 664
                R   +   + L + + +   +       E++  ++   +   T      +     
Sbjct: 425 SMRLYRLSKIEQQIYLEESKNLEKNITKFKKLIENKDEFDKNLINMLTD----FKKHHGK 480

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             +            ++DE++       E      TK G   +  I          +   
Sbjct: 481 PRKTRIIDSDIKIKINKDELV-----KDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQ-- 533

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SV 781
               L  GD  I   I+                + A  ++   + +   +    +     
Sbjct: 534 ----LPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPN 589

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
              I      +     QF++ +S+  F KR +        +     +  ++ +  E   L
Sbjct: 590 NQQILSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQK----KLQNIFRFKEGDEL 645

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++VF       I+L++ +   +++ ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 646 ISVFLEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88]
 gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a]
 gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
 gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89]
 gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1]
 gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11]
 gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88]
 gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a]
 gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82]
 gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA]
 gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034]
 gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1]
 gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101]
 gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146]
 gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75]
 gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3]
 gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3]
 gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327]
 gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252]
 gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263]
 gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1]
 gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206]
          Length = 752

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2]
          Length = 752

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++   +F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPGVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPGVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536]
 gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
 gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073]
 gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536]
 gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972]
 gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042]
 gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354]
 gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1]
 gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1]
 gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1]
 gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972]
 gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1]
 gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86]
 gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605]
          Length = 752

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218]
          Length = 757

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/745 (32%), Positives = 392/745 (52%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP   L  LM+ ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V H E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 IQFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      +S++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGISDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+EL +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDCESLNYKAGDNYLAHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTSIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  NRSGK  + L    EI++ +       ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++        ++V+S
Sbjct: 671 --KGKGNKIINIPAAKAKAREEVVS 693



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 71/185 (38%), Gaps = 24/185 (12%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV----- 781
           I  AKG +V   ++   A  +Y    C   +  A      G +  + S    S+      
Sbjct: 515 IRHAKGHEVDCESLNYKAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEP 574

Query: 782 ------EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                     +  R   +  ++Q  L  S+ G+G      D    NRSGK +        
Sbjct: 575 ITGRLNVAEGTSIRQVVMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNL----- 629

Query: 836 NEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKD 888
            E   ++A   VND  +D+I+ ++++G ++  P+ ++    +  KG  I +         
Sbjct: 630 PENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLGK-GKGNKIINIPAAKAKAR 688

Query: 889 ERVVS 893
           E VVS
Sbjct: 689 EEVVS 693


>gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
 gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280]
          Length = 752

 Score =  547 bits (1408), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIKDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 +V     + +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 629 HVMP-PVV---IKDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
 gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19]
          Length = 733

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 242/728 (33%), Positives = 365/728 (50%), Gaps = 59/728 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    I    + D +   YL YA++ I+ RA+PD+RDGLKPVHRR+L+ M  M +    
Sbjct: 3   PDAGGRIVDEPLGDALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
              KCA++ GEVMG +HPHG+ AIYDAL RMAQ+++ R  L++GQGNFG++DGD  AA R
Sbjct: 63  AARKCAKVVGEVMGNFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTECRL  AA  +LD + +D VDFRP YD    EPVVL   +PN+L NG  GIAVGMAT+
Sbjct: 123 YTECRLTLAAMMILDGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATS 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSI 248
           +P HN+ E+VD C  ++ N       LME I GPDFPTG V    R  I+ AY TGRGS+
Sbjct: 183 VPPHNVVELVDACRKLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSV 242

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R    +E     + +I+V EIPYQV K+ ++E++A+L+  K+   + D+RDESD    
Sbjct: 243 RVRARYEVEDAGRGQWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDE-NI 301

Query: 309 RVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+V+E K R    +V++  L++ + L++ F +NM  L+    P    L   L A++  R 
Sbjct: 302 RLVLEPKSRNIEPEVLMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRR 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V++R + + L K   R H+L GL IA  NLDEV+RI+R    P                
Sbjct: 362 VVLLRMSNWRLEKIEKRLHLLDGLMIAFLNLDEVIRIVREEDKPRDM------------- 408

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q   IL+ RL +L  L    I++E   L  E + 
Sbjct: 409 ----------------LMSRFTLSELQADYILDTRLRQLARLEEMVIQDEHKKLSEEREG 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVS 543
            L +L S       I Q L+ V+ +L +PRRT   +          E  + +E + V +S
Sbjct: 453 ILALLGSEKMQWKRIDQLLVEVRKKLPSPRRTTYADAPVGIEVAAIESYLPKEAITVILS 512

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA +   +  S +  ++ D ++ L         L  ++ G       
Sbjct: 513 KRGWI--------RAAKGKVEDPSELKFKEGDELSFLVPGYNTDKFLILTTDGRFLTLSG 564

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
            +LP    +  G+ L  +L + +  +I T+  +            V   K+G        
Sbjct: 565 DKLPSA--RGHGEPLRLMLDIEESAKIVTVFAYTAGAKR------VMVAKNGYGFVMNEE 616

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           D +   R+GK  M +D              + I +  +  + + +P++ +       + G
Sbjct: 617 DAVANKRAGKQTMTVDG--TEAMAALQVTGDLICVLGENNKVLVYPVTELPEM----ARG 670

Query: 724 VRGISLAK 731
            +G+ L  
Sbjct: 671 -KGVKLQA 677


>gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
 gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ IR V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRIRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
 gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972]
          Length = 757

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 246/745 (33%), Positives = 393/745 (52%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP   L  LM+ ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V H E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 IQFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      +S++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGISDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+EL +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPLVEREEAKALTERDLMPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDCEGLNYKAGDNYLAHACGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNVAEGTSIRQVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  NRSGK  + L    EI++ +       ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++        ++V+S
Sbjct: 671 --KGKGNKIINIPAAKAKAREEVVS 693



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 69/186 (37%), Gaps = 19/186 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD  ++ A                 +      L S   +    
Sbjct: 516 RHAKGHEVDCEGLNYKAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPI 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG     R   +  ++Q  L  S+ G+G      D    NRSGK +       
Sbjct: 576 TGRLNVAEGTSI--RQVVMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNL---- 629

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AK 887
             E   ++A   VND  +D+I+ ++++G ++  P+ ++    +  KG  I +        
Sbjct: 630 -PENAEIMAPQAVNDLESDEILAITNQGRMLLFPIKDLPQLGK-GKGNKIINIPAAKAKA 687

Query: 888 DERVVS 893
            E VVS
Sbjct: 688 REEVVS 693


>gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str.
           11368]
 gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   L+ L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
 gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
 gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638]
          Length = 757

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 238/758 (31%), Positives = 376/758 (49%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFAISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D+++ + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPAADAAAGKDRLVWLFVLPP 698



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 74/230 (32%), Gaps = 28/230 (12%)

Query: 692 QENDILLTTKLGQCVRFPISAIRV---------FAG--RNSVGV----RGISLAKGDQVI 736
            ++     T+ G+        I             G  R++ G      G+S   GD   
Sbjct: 477 GDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFR 536

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           + A                 +      L S   +        +   G   E+    +   
Sbjct: 537 AAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL--MAPD 594

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +Q +L  S+ G+G   +  D    NR+GK          N   AL  +     +D ++ +
Sbjct: 595 DQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLPENAK-ALPPLEIYGPDDMLLSI 650

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           +  G ++  PV ++   S+  KG  I S       A  +R+V +  +   
Sbjct: 651 TAAGRMLMFPVADLPELSK-GKGNKIVSIPAADAAAGKDRLVWLFVLPPQ 699


>gi|72080375|ref|YP_287433.1| DNA topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
 gi|71913499|gb|AAZ53410.1| topoisomerase IV subunit A [Mycoplasma hyopneumoniae 7448]
          Length = 846

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 222/814 (27%), Positives = 391/814 (48%), Gaps = 44/814 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +    + +  +   +   ++ Y+  VI  RAIPD+RDGLKPV RRIL+ M Q+G++ +K
Sbjct: 2   NKSLDSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSK 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ +IYDAL R+AQ+W +   L+E  GN GS+D DPPAA R
Sbjct: 62  NYKKSARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPPAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + +  LL+ + K+ V F PN+D S +EP +L A +PN+L+NG  GIA G AT 
Sbjct: 122 YTEVRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATE 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+D  + +I NP I ++ +  II GPDFPTG ++ G++GI +A+ TG+G I 
Sbjct: 182 IPPHNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGGIVYGKSGIFDAFKTGKGKIK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I     I +    +  I +T IP+ ++K++++E+I ++  + +I  I ++ D+SD+ G  
Sbjct: 242 ISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVS 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++IEL++  + D+I+N L + T LQ  +S N VA+    P+  ++  ++  ++    ++ 
Sbjct: 301 ILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAICDNSPKLLSIKEMIFYYLEHLRKIK 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +    + L K + R  ++ G        DEV+++IR S N                 + D
Sbjct: 361 LAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDN------------SKVGVVSD 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI                  S+ Q  AI  +RL RL+ + +     E  +L   I     
Sbjct: 409 LIKF-------------FNFSQTQAEAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKK 455

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           ++ ++      +   L   K     PR+T     +  + +  ++ +  E     ++  G 
Sbjct: 456 LIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGL 515

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++ +     +           + + DF     I++     +F ++ G +    V ++P
Sbjct: 516 YKKLDI-----KNSLPDEIEKTQLPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIP 570

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             + +     L   L +   ++I   +     +S  ++ +++F +K    +R  L   ++
Sbjct: 571 ELNLKNSPNNLKITLGIPNNQQI---LSVFFADSFESSQFLIFISKFSFAKRMNLDQLMK 627

Query: 668 INRSGKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           I +     + +    DE++SV    +  +I+L T   + ++  IS I     RNS G++ 
Sbjct: 628 IKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQNRALKMSISEI-PIYTRNSTGIKI 686

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
               K + + +   +  +++                 L  G+                  
Sbjct: 687 FRHRKNEFISASQTIESSESLAVIDFNSQFEKINTENLFFGNKILTPKNFKTKLDFSLSP 746

Query: 787 EERCQELKLKEQFILTVSEKGFG-KRTSSYDFRI 819
           +      +      L + E G G K  S  DFR 
Sbjct: 747 KSIIIYNEN-----LQIFEFGEGLKIFSLNDFRK 775



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNI 785
           L  GD  I   I+                + A  ++   + +   +    +        I
Sbjct: 534 LPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQI 593

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +     QF++ +S+  F KR +        +     +  ++ +  E   L++VF
Sbjct: 594 LSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQK----KLQNIFRFKEGDELISVF 649

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                  I+L++ +   +++ ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 650 LEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 705


>gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
 gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088]
          Length = 753

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/759 (31%), Positives = 377/759 (49%), Gaps = 69/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++  +  +E+E     SVS+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M
Sbjct: 1   MSDMPMLPEEDE-----SVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSA 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL A+ PNVL+NG
Sbjct: 116 D-DPKSFAAMRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV   + +++ P   LD L E I+ PDFPT   +I  R  I
Sbjct: 175 TTGIAVGMATDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEI 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y +GRGSI +R     E        I+V  +P+QV+ A +LE+IA  ++ K++  + 
Sbjct: 235 KAFYRSGRGSIKMRAHWRKEDG-----AIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVN 289

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD +   R+VI  K      D ++  L+  T L+  + +N+  + N  +P   +L
Sbjct: 290 DLRDESDHENPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL+ ++ FR E V RR +Y L K   R H+L G  IA  N+DEV+ IIR    P+   
Sbjct: 350 DAILREWLEFRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPK--- 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  A+LEL+L  L  L    IR
Sbjct: 407 --------------------------PVLMQRFGLSDAQAEAVLELKLRNLAKLEEMKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E ++    L S +R+  +IK+ELL+V ++    R + +V         +++ 
Sbjct: 441 GEQDELEKEREQLELTLGSTARMRTLIKKELLAVAEQFGDERSSPLVAREEAKAFSEKEL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        RA +      + +  +  D         ++ S +  
Sbjct: 501 MSTEPITVVLSEKGWI--------RAAKGHDIDPTSLSYKAGDNFNLAAAGRSNQSAILI 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           +         + F           ++ A+
Sbjct: 553 DSTGRAYTLPTHNLPSARGQGE--------PVTGRISPPPGVGFKALLLGDERQKILLAS 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G     +L   +  N++GK  + L +  E+L        +D  +   +  G+ + FP+
Sbjct: 605 DAGYGFVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDLLVAAVSTEGRLLVFPL 664

Query: 711 SAIRVF---AGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           + +       G   + V    +   ++++    VL  ++
Sbjct: 665 ADLPELARGKGNKILSVPSARVKSREEMVKGIAVLTQES 703


>gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV
           subunit A and topoisomerase IV [Escherichia coli
           BL21(DE3)]
 gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606]
 gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 376/722 (52%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WSKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADADAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLSYKAGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E++ +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPDNAHVMPPLVIEDESNMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           S+
Sbjct: 673 SI 674



 Score = 45.2 bits (105), Expect = 0.051,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD     A            I       A   +          
Sbjct: 511 RSAKGHDIDAQGLSYKAGDS--WKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +   ++    + D   ++L ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 625 -PDNAHVMPPLVIEDESNMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIISIPAAE 678


>gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
 gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969]
          Length = 757

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/758 (31%), Positives = 374/758 (49%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVIALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYENGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFAISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M D D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAYGDDRRSPLTERAEAKAMSDHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +       G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPGGLSYKAGDSFRAAARGMSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        +D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D++  + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPGAQAAAGEDRLAWLFVLPP 698



 Score = 45.2 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A  +              +      L S   +    
Sbjct: 515 RSAKGHDIDPGGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 575 TGKLTPPPGATIEQVL--MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N   AL  +     +D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 630 ENAK-ALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933]
 gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           W3110]
 gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A]
 gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS]
 gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739]
 gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1]
 gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989]
 gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39]
 gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026]
 gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9]
 gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B]
 gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736]
 gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           EDL933]
 gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           Sakai]
 gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301]
 gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T]
 gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr.
           W3110]
 gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401]
 gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS]
 gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A]
 gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739]
 gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638]
 gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC869]
 gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22]
 gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019]
 gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171]
 gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012]
 gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1]
 gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli]
 gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11]
 gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989]
 gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1]
 gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39]
 gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026]
 gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952]
 gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str.
           12009]
 gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str.
           11128]
 gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1]
 gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615]
 gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088]
 gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412]
 gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185]
 gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302]
 gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1]
 gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1]
 gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1]
 gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1]
 gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7]
 gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1]
 gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W]
 gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407]
 gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70]
 gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T]
 gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W]
 gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1]
 gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431]
 gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905]
 gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212]
 gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B]
 gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           G5101]
 gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str.
           493-89]
 gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H
           2687]
 gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010]
 gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68]
 gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180]
 gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11]
 gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520]
 gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482]
 gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120]
 gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489]
 gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509]
 gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167]
 gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125]
 gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736]
 gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718]
 gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271]
 gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591]
 gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74]
 gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1]
 gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 381/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   ++  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        +VVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKMYESGRGSIRMRAVYRVEDGD-----VVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     AD ++  L+  T L+S + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A 
Sbjct: 351 RTILVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E+Q   ILE RL +L  L    IR
Sbjct: 410 ----------------------------LIARFELTEIQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S ++L  +++ EL+   +     RR+ IVE        + + 
Sbjct: 442 GEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVERAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +  
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLPAHSLPSA--RGQGEPLTGRLTPPPGATFECVLL------PDDDALYVVAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  GD+V S
Sbjct: 666 SDLPQLG--KGKGNKIIGV-PGDRVAS 689



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 59/184 (32%), Gaps = 20/184 (10%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD            ++    +      S      S  +           +    
Sbjct: 529 GLSYKAGD---GFKAAAAGRSNQFAVLIDSTGRSYSLPAHSLPSARGQGEPLTGRLTPPP 585

Query: 786 SEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  L   +  +  V S+ G+G      D +  N++GKG+ +           ++  
Sbjct: 586 GATFECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL-----PNGAKVMTP 640

Query: 845 FPV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS-------VE 895
            PV   + D +  V+ +G L+   V+++    +  KG  I      +RV S       + 
Sbjct: 641 RPVADREQDWLAAVTTEGRLLVFKVSDLPQLGK-GKGNKIIGV-PGDRVASREEFVTDLA 698

Query: 896 RIRE 899
            I E
Sbjct: 699 VIPE 702


>gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703]
          Length = 758

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/758 (32%), Positives = 386/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQRFAISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTEREEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++       + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGANIEHVL------MAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        +D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D+++ + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPAADAAAGKDRLVWLFVLPP 698



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A            +       A   L          
Sbjct: 515 RSAKGHDIDPSGLSYKAGDSFRAAA--RGKSNQPVVFMDSTGRSYALDPLTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 573 PLTGKLTLPPGANIEHVLMAADDQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
            N   AL  +     +D ++ ++  G ++  PV ++   S+  KG  I S       A  
Sbjct: 630 ENAK-ALPPLEIYGSDDMLLSITAAGRMLMFPVADLPELSK-GKGNKIVSIPAADAAAGK 687

Query: 889 ERVVSVERIRES 900
           +R+V +  +   
Sbjct: 688 DRLVWLFVLPPQ 699


>gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b]
          Length = 751

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 372/757 (49%), Gaps = 69/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +       +      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  KATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G GSI +R +   EK     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDE
Sbjct: 240 SGNGSIKMRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI  +      + +++ L+  T L+  + VN   +    KP    L+ IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P+        
Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQ------- 407

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                 G      L+E Q  AILE++L  L  L    +R EL+ 
Sbjct: 408 ----------------------GLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E       L+S   L  ++K+E+   +DE   PRR+ I+        ++ED +  E 
Sbjct: 446 LSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  T+  VLFF   G 
Sbjct: 506 ITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGK 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY      LP    Q           L         + F           V+ AT  G  
Sbjct: 558 VYSLPGHVLPSARGQGE--------PLTGKLNPAEGVLFEAIVGGEPEQKVLLATDSGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              K+ D    NR+GK  +KL     IL            +   T +G+ + F +  +  
Sbjct: 610 FIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +     G + IS+      ++ + ++ M ++   D+
Sbjct: 670 LS--RGKGNKLISIPAAKAVSREEYIVDMQVLTTNDS 704



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+  +  +                +      L S   +    
Sbjct: 517 RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + E         EQ +L  ++ G+G      D  + NR+GK      +S+
Sbjct: 577 TGKLNPAEGVLFEAIVG--GEPEQKVLLATDSGYGFIAKIEDLYVKNRNGK--ACIKLSE 632

Query: 835 INEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TA 886
            +    ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +
Sbjct: 633 NS---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSR-GKGNKLISIPAAKAVS 688

Query: 887 KDERVVSVERIRESE 901
           ++E +V ++ +  ++
Sbjct: 689 REEYIVDMQVLTTND 703


>gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
 gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970]
          Length = 757

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 239/758 (31%), Positives = 375/758 (49%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVIALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYENGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFAISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M D D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAYGDDRRSPLTERAEAKAMSDHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D++  + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPSAQAAAGEDRLAWLFVLPP 698



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A  +              +      L S   +    
Sbjct: 515 RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 575 TGKLTPPPGATIEQVL--MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N   AL  +     +D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 630 ENAK-ALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC
           17616]
 gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC
           17616]
 gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616]
          Length = 773

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/812 (31%), Positives = 387/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDAPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LYAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDA 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I +AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIASAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  +TSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            NLDEV+RIIR S  P+ A                                   L++ Q 
Sbjct: 418 LNLDEVIRIIRESDEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D     L+        
Sbjct: 613 -LMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALAIDPAGVVLIGAGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + +  +
Sbjct: 731 GGKVQDETLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G S   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--ASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 713


>gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227]
 gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112]
 gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
 gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+I+ P+  LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L  IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLREILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
 gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2]
 gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M]
          Length = 773

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 254/812 (31%), Positives = 387/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDSPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LYAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +  + LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDA 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I +AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIASAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  +TSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            NLDEV+RIIR S  P+ A                                   L++ Q 
Sbjct: 418 LNLDEVIRIIRESDEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL SL  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D     L+        
Sbjct: 613 -LMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALAIDPAGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + +  +
Sbjct: 731 GGKVQDETLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G S   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--ASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 713


>gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
 gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM
           12444]
          Length = 761

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 234/756 (30%), Positives = 374/756 (49%), Gaps = 72/756 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M       D  +   I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MATDTTEPDPFDA--IVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++  + + K AR+ G+V+GKYHPHG+A++YDA+ R+AQDW+LR  L+EGQGNFG++
Sbjct: 59  RQLKLDPAQAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGNI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  L+  L + TVDF P Y+G  +EP +    +PN+L NG  
Sbjct: 119 DGDNAAAYRYTEARLTKTAIQLMSGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP+HN+ E++D  + +IDNP  +   LME+  GPD PTG VI+     I N
Sbjct: 179 GIAVGMATNIPSHNVAEIIDATLLLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVISN 238

Query: 240 AYATGRGSIVIRGVSHI-------------EKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           AY TGRG+I +RG                 EK  G + Q+VV+EIPY V K  ++E+IA+
Sbjct: 239 AYETGRGAIRVRGRFSTGRDEAGNWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIAQ 298

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L+ +K++  + D+RDESD Q   V+I   R    D++   LYR T L++ F +N+  L+ 
Sbjct: 299 LIADKKLPILEDIRDESDEQIRLVLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLDS 358

Query: 347 YKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            +      L  +L+ +V  + ++++RR+++ L+K   R  +L G  IA  NLD ++ IIR
Sbjct: 359 RRTPGVLGLKLVLQEWVISQIDILLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEIIR 418

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               P+                                     L++ Q  AIL +RL  L
Sbjct: 419 TEDEPK-----------------------------PVMMAEFELTDRQAEAILNMRLRSL 449

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI 520
             L   ++R E ++L  E +E   +L S +R    +K++L +++ +         RRT I
Sbjct: 450 RKLEEMELRKERDALLAEQEELQKLLDSPARQRTRLKRDLAALRKDYAEDTALGRRRTTI 509

Query: 521 VE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            E     +   +  I +E + V +S  G++        RA +           ++ D   
Sbjct: 510 AEAAPTREFSMDAMIEKEPVTVILSAKGWI--------RAAKGHVPLDGDFKFKEGDGPA 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   +L     G  Y     +LP       G+ +  ++ ++   +I +++P   
Sbjct: 562 FALHCQTTDKLLVAVDNGRFYTLGADKLPGARGF--GEPIRTMVDIDPDAQIVSVLP--- 616

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDIL 697
                    ++ A   G     ++ + +   R G+  +      ++  V     + + + 
Sbjct: 617 ---YKPKGQLLLAANTGRGFAAEMDELLAETRKGRGVVSTKPGVKLAVVREIAPEHDHVA 673

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +  +  + V F +S + + A     GV       G+
Sbjct: 674 VIGENRKLVIFALSEVPLLA--KGQGVTLQRYKDGE 707


>gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016]
 gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016]
          Length = 761

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/755 (32%), Positives = 390/755 (51%), Gaps = 68/755 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP   L  LM+ ++GPDFPT   +I   + ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D ++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 ITFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  ++    RR+ +V         + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNTLLKKEIRADAEKFGDDRRSPLVVREEAKALTERDLMPNEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +   S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDCQGLSYKAGDSYLAHACGKSNQQAVLLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++  G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNITPGSSIRQVIMGEEEQLW------LIGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  NRSGK  + L    E+++         +DIL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDILAITNQGRMLMFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADAD 747
                G + I++        ++++S  I L   A 
Sbjct: 671 --KGKGNKIINIPAAKAKAKEEILSHLIALPKGAS 703



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 10/170 (5%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD  ++ A                 +      L S   +    
Sbjct: 516 RHAKGHEVDCQGLSYKAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPI 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G  S  R   +  +EQ  L  S+ G+G      D    NRSGK + +   + 
Sbjct: 576 TGRLNITPG--SSIRQVIMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENA 633

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                   +     DND I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 634 EVMTP---SAVLDLDNDDILAITNQGRMLMFPIKDLPQLGK-GKGNKIIN 679


>gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v]
          Length = 752

 Score =  546 bits (1407), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNKLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594]
 gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594]
          Length = 769

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 233/755 (30%), Positives = 379/755 (50%), Gaps = 64/755 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    ++ +    I        ++  YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MSDPTEITEPDPFDAIVDAPFDSALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ ++    + K AR+ GEV+GKYHPHG+ A YDA+ R+AQD++LR  L+EGQGNFG++
Sbjct: 61  RQLKLDPTNTFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  L+  L + TVDF P Y+G  +EP ++   +PN+L NG  
Sbjct: 121 DGDNAAAYRYTEARLTRTAMALMAGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGAS 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP+HN+ E++D  + +IDNP ++   LME+ +GPD PTG +I+     I N
Sbjct: 181 GIAVGMATNIPSHNVHEIIDATLELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISN 240

Query: 240 AYATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           AY TGRGS  IRG  H             IE+  G + Q+V++EIPYQV K  ++E+IA+
Sbjct: 241 AYETGRGSFRIRGRFHAAEAEKQADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQ 300

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
            + +K++  + D+RDESD Q   V++   R    +++   +Y+ T +++ F +N+  L+ 
Sbjct: 301 AIADKKLPILDDVRDESDEQIRIVLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDA 360

Query: 347 YKPER-FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            +      L  +L+ +V  + E++ RRT++ L++   R  ++ G  IA  NLD V+ IIR
Sbjct: 361 TRTPMVMGLKELLENWVRSQIEILQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIR 420

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
           +   P+                                     L++ Q  AIL +RL  L
Sbjct: 421 YEDEPKQ-----------------------------VMMAEFSLTDRQAEAILNMRLRSL 451

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI 520
             L   +++ E   L  E +E   +L S +R    +K++L +++ E         RRT I
Sbjct: 452 RKLEEMELKQEKTDLLAEQEELEKLLGSPARQRTRLKRDLKALQKEYGLDTELGARRTTI 511

Query: 521 --VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
              E  ++   +  I +E + V +S  G+V+     V     + G        ++ D   
Sbjct: 512 AEAEPTVEFSMDAMIEKEPVTVVLSQKGWVRAAKGHVDLEGSKDG--CGDFKYKEGDGPA 569

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   VL  +  G  +     +LP       G+ + N L ++   +I  ++    
Sbjct: 570 FAVHCQTTDKVLLAADNGRFFTLGADKLPGARGF--GEPVRNTLDIDAEAQIVAML---- 623

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDIL 697
              S     ++ A   G     ++ + +   R GK  + L    ++  V      ++ + 
Sbjct: 624 --VSNPRGRLLLAADTGKGFAAEMGELVAETRKGKQVVNLKGDAKLRVVRPIADCDDHVA 681

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + V F +  + V A     GV+      G
Sbjct: 682 VVGENRKLVVFNLEELPVLA--RGQGVQLQRYRDG 714


>gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6]
 gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
 gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6]
 gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O]
          Length = 761

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/755 (32%), Positives = 390/755 (51%), Gaps = 68/755 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP   L  LM+ ++GPDFPT   +I   + ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D ++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   +  LM R 
Sbjct: 356 ITFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+  ++L S  RL  ++K+E+ +  ++    RR+ +V         + D +  E + 
Sbjct: 447 KERKKLEELLGSERRLNTLLKKEIRADAEKFGDDRRSPLVVREEAKALTERDLMPNEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +   S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDCQGLSYKAGDSYLAHACGKSNQQAVLLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++  G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHTLPSA--RGQGEPITGRLNITPGSSIRQVIMGEEEQLW------LIGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  NRSGK  + L    E+++         +DIL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDILAITNQGRMLMFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADAD 747
                G + I++        ++++S  I L   A 
Sbjct: 671 --KGKGNKIINIPAAKAKAKEEILSHLIALPKGAS 703



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 10/170 (5%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD  ++ A                 +      L S   +    
Sbjct: 516 RHAKGHEVDCQGLSYKAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPI 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G  S  R   +  +EQ  L  S+ G+G      D    NRSGK + +   + 
Sbjct: 576 TGRLNITPG--SSIRQVIMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENA 633

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                   +     DND I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 634 EVMTP---SAVLDLDNDDILAITNQGRMLMFPIKDLPQLGK-GKGNKIIN 679


>gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 752

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 241/736 (32%), Positives = 378/736 (51%), Gaps = 62/736 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E N L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLARLEEMKIRGEQNELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S  G+V
Sbjct: 451 LASERKMNTLLKKELQADADAFGDDRRSPLHEREEAKAMNEHDMLPSEPVTIVLSQSGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKSGDSFKAAVKGKSNQPVAFIDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MEADDQKLLMASDAGYGFICTFNDLVSR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALISLPDNAHVMPPLIIENESDMLLAITAAGRMLMFPVSDLPELS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLH 743
           S+   +    +  + H
Sbjct: 673 SIPSAEAAKGVDGLAH 688



 Score = 45.6 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 61/175 (34%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLSYKSGDSFKAA--VKGKSNQPVAFIDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK + +   + 
Sbjct: 569 PLTGKLTLPPGATVDHMLMEADDQKLLMASDAGYGFICTFNDLVSRNRAGKALISLPDNA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 ++     N++D ++ ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 629 HVMPPLIIE----NESDMLLAITAAGRMLMFPVSDLPELSK-GKGNKIISIPSAE 678


>gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94]
 gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94]
          Length = 752

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 758

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 243/758 (32%), Positives = 386/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQRFAISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTEREEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++       + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGANIEHVL------MAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        +D +L  T  G+ + FP++
Sbjct: 603 DVGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D+++ + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPAADAAAGKDRLVWLFVLPP 698



 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A            +       A   L          
Sbjct: 515 RSAKGHDIDPSGLSYKAGDSFRAAA--RGKSNQPVVFMDSTGRSYALDPLTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 573 PLTGKLTLPPGANIEHVLMAADDQKLLMASDVGYGFVCTFNDLVAKNRAGK---TMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
            N   AL  +     +D ++ ++  G ++  PV ++   S+  KG  I S       A  
Sbjct: 630 ENAK-ALPPLEIYGSDDMLLSITAAGRMLMFPVADLPELSK-GKGNKIVSIPAADAAAGK 687

Query: 889 ERVVSVERIRES 900
           +R+V +  +   
Sbjct: 688 DRLVWLFVLPPQ 699


>gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188]
 gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 770

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 250/765 (32%), Positives = 393/765 (51%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  D+ E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPDDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R     E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWEKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                  T  L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------DLMRTFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           +IL +RL  L  L   +IR E + L +E  +   +L+S +R    I  E+ SV+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQWKKISAEIKSVREKFGPK 509

Query: 516 -----RRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT   +     L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T               ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + V FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMVVFPLSDIPEMT--RGKGVRLQKYKDG 715



 Score = 39.4 bits (90), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 44/160 (27%), Gaps = 9/160 (5%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +GD++           D                                    N  + 
Sbjct: 565 FKEGDKLK--LAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQDI 622

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +      +L VS +G G      +   + R GK +         ++   V+     
Sbjct: 623 LTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVS----- 677

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             D I +V +   ++  P+++I   +R  KGV +      
Sbjct: 678 -GDHIAVVGENRKMVVFPLSDIPEMTR-GKGVRLQKYKDG 715


>gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica]
          Length = 748

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 247/759 (32%), Positives = 382/759 (50%), Gaps = 72/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNTAKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  V ++D P   LD LME ++GPD+PT   +I     I
Sbjct: 173 TTGIAVGMATDIPPHNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  +     +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYKNGRGSVRMRAVWSKEDGN-----VVITALPHQVSGAKILEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR E V +R  + L K   R HVL GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE QT AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMARFGLSETQTEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL S  +L  ++K+E+++        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDKLQAILGSERKLNTLLKKEIIADAATYGDERRSPMRERDEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 TPSEPVTIVLSEMGWV--------RSAKGHDIDPAGLNYKAGDSFRGAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    + +G+ L   L+L  G  +  ++       + +    + A+
Sbjct: 551 DTTGRSYSLDPRDLPSA--RGQGEPLTGKLTLPAGATVEHVL------MASDEQKFLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       SD +  NR+GK  + L     +++      E D  +L  T  G+ + FP+
Sbjct: 603 DAGYGFICTFSDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLAITSTGRMLMFPV 662

Query: 711 SAIRVFAGRNSVGVRGISL--AKGDQVISMAIVLHADAD 747
           + +   +     G + IS+  A GD+++S   +L   + 
Sbjct: 663 ADLPQLS--KGKGNKIISVQAASGDELLSGLFILPPQSS 699



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 18/233 (7%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV--- 724
           +   IA      DE        + ++    ++       P++ +    G  R++ G    
Sbjct: 466 KKEIIADAATYGDERR--SPMRERDEAKAMSEHDITPSEPVTIVLSEMGWVRSAKGHDID 523

Query: 725 -RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             G++   GD     A                 +    R L S   +        +   G
Sbjct: 524 PAGLNYKAGDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTLPAG 583

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E     +   EQ  L  S+ G+G   +  D    NR+GK +     +  N +  L  
Sbjct: 584 ATVE--HVLMASDEQKFLMASDAGYGFICTFSDLVAKNRAGKALITLPENA-NVMTPL-- 638

Query: 844 VFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVVS 893
               N+ D ++L ++  G ++  PV ++   S+  KG  I S   A  + ++S
Sbjct: 639 -EINNEQDDMLLAITSTGRMLMFPVADLPQLSK-GKGNKIISVQAASGDELLS 689


>gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1]
          Length = 749

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 231/744 (31%), Positives = 371/744 (49%), Gaps = 58/744 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            +  S   +++ I  V +   +Q  YL YA++ I  RA+PD+RDGLKPVHRRI+  M  +
Sbjct: 2   SVKMSQPFDKECIEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLL 61

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +   + Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++DGD
Sbjct: 62  KLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGD 121

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ + A  LL+ + +D++DFR  Y+   +EPVVL   +PN+L NG  GIA
Sbjct: 122 NAAAMRYTEARMTEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIA 181

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYA 242
           VGMAT+IP HN+ E+ D  + +I +P+ + + L + + GPDFPTG + +  +  I+ +Y 
Sbjct: 182 VGMATSIPPHNVAELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYR 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG   +R   H E++S     IVVTEIPYQV K+ ++EK AEL+  +R+  + D+ DE
Sbjct: 242 TGRGLFRLRSRWHQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDE 301

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILKAF 361
           S      V++   R   A++++  L++ T  +  F +N+  L   K     +L   L+ +
Sbjct: 302 SAEDIRIVLVPKNRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQW 361

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R+EV+VRR+ Y LN+   R  +L G  IA  NLD+V++I+R    P+          
Sbjct: 362 LEHRKEVLVRRSSYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEPK---------- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                 K+LI+                L++ Q  AIL +RL  L  L   +IR E  SL 
Sbjct: 412 ------KELIE-------------HFKLTDNQAEAILNMRLRSLRKLEEFEIRKEFESLK 452

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE---GLLDMEDEDCI 533
            E  +   +L+S  +   +I  E+  V+           RRT   +     ++   +  I
Sbjct: 453 TEEAQLQALLASNIKQWKMISDEITKVRKIFGPETILGKRRTTFEDAPKHDVNDIQQAMI 512

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            RE + + +S  G++        RA +        +  ++ D +       T   ++  S
Sbjct: 513 EREPVTIIISEKGWM--------RALKGHLNDYKMLSFKEGDCLKLALPAFTTDKIVVVS 564

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  +      LP G        ++  +          +    E          +  + 
Sbjct: 565 TGGKFFTIGANVLPGGRGHGEPIRILVDMDGEHDILTAFVHNAQEKR--------LLVSA 616

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
           +GN      ++ I   R GK  M + S D++         + + +  +  + + F I  I
Sbjct: 617 YGNGFIVSENEVIANTRKGKQIMHVKSPDKVKLCVPVNG-DYVAVVGENRKLLIFAIEQI 675

Query: 714 RVFAGRNSVGVRGISLAKGDQVIS 737
              +     GVR      G  V +
Sbjct: 676 PEMS--RGKGVRLQRYKDGGVVDA 697


>gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
 gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60]
          Length = 749

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 233/760 (30%), Positives = 386/760 (50%), Gaps = 59/760 (7%)

Query: 1   MTEHIISSDEEEEKGITSV-SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++ +++   +         S+ +  +N+YL YA+ VI+ RA+P + DGLKPV RRI++ 
Sbjct: 1   MSDTLVAKTTKANDLNNPTRSVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++   K  K AR  G+V+GKYHPHG++A Y+A+  M+Q +S R  LI GQGNFGS
Sbjct: 61  MSELGLKNTAKPKKSARTIGDVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGS 120

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L   A+ LL++LG+ TVD++ N+DG+ QEPV L AR PN+L+N
Sbjct: 121 PD-DPKSFAAMRYTEAKLSAYANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLN 179

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTG 236
           G  GIAVGMAT+IP HNL EVV GC+A++  P +    L + I  PD PT   +I     
Sbjct: 180 GTTGIAVGMATDIPPHNLSEVVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPED 239

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           +   Y TGRGS  +R   H++    +   +++  +PYQ++   ++E+IA L+  K++  +
Sbjct: 240 LLQLYKTGRGSYKMRATYHVDDKEKNL--VIIDALPYQISGNKIIEQIANLINAKKLPWV 297

Query: 297 ADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFT 353
            D+ DESD Q   R+V+EL+      + +++ L+  T L+S + VN+  +    KP+  +
Sbjct: 298 TDIHDESDHQNACRIVLELRSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNGKPQVKS 357

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L+ IL  +++ R + V RR +Y L+K   R H+L GL IA  ++DEV+RIIR   +P   
Sbjct: 358 LLTILTEWLSVRRDTVTRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDP--- 414

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           + ELM R                            L+E Q  AIL++RL +L  L   ++
Sbjct: 415 KAELMTR--------------------------YDLTESQANAILDIRLRQLARLEEIEL 448

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
           + E + L  E  +    L++  +L G++ +EL +   E    R++ IVE       ++ D
Sbjct: 449 KREQSDLEAEKAQIEGYLNNPDKLTGLMIEELTADMKEHGDKRQSPIVERTEATALKETD 508

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               E + V VS  G++        R+ +      + +  R  D         ++  V  
Sbjct: 509 LAPSEPVTVIVSKSGWI--------RSAKGHDVDAANMNYRSGDAYLAHAQGKSNEKVYL 560

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             + G  Y+     LP    Q           L    + T    F       ++  ++ A
Sbjct: 561 MDNTGRSYRLDAHTLPSARGQGE--------PLTSLLKPTGGASFVNVLMGQDDSKLIMA 612

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  G    N  +D     ++GK  +  D    +++ +   Q+  + + +  G  + +P++
Sbjct: 613 SSQGYGFINTFADLDTNQKAGKNVINFDDAFSLITHQIGEQDTLVGVVSSAGHLLVYPLT 672

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
            + +       G + I L  GD V+++      D+   + 
Sbjct: 673 ELPMMK--KGKGNKLIDLKDGDSVVAITTFSEGDSLSLDS 710



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   +  ++  S +G+G   +  D   + ++GK +        ++  +L+    + + D 
Sbjct: 602 MGQDDSKLIMASSQGYGFINTFADLDTNQKAGKNVINF-----DDAFSLI-THQIGEQDT 655

Query: 853 II-LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++ +VS  G L+  P+ E+ +  +  KG  +      + VV++    E +
Sbjct: 656 LVGVVSSAGHLLVYPLTELPMMKKG-KGNKLIDLKDGDSVVAITTFSEGD 704


>gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 750

 Score =  546 bits (1406), Expect = e-153,   Method: Composition-based stats.
 Identities = 245/743 (32%), Positives = 370/743 (49%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +            I  + +   ++  YL YA++ I+GRA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKATEPPAG--GGDIEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAM 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++  + Y KCARI G+VMGK+HPHG+A+IYDAL R++QD+++R  LI+GQGNFG+V
Sbjct: 59  RILRLDPGQGYKKCARIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNV 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+   A  LL  + +D VDF+  Y+   +EP+VL   +PN+L NG  
Sbjct: 119 DGDSPAAMRYTEARMTDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSS 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT+IP HN  E+ D  + +I+NPD   DAL+  ++GPD PTG VI+     I+ 
Sbjct: 179 GIAVGMATSIPPHNAAELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIRE 238

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRGS  +R     E        +VVTEIPYQV K+ ++EKIAEL+  +++  + D+
Sbjct: 239 AYDTGRGSFRVRARWETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDI 298

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
           RDES     R+VIE K R    ++++  L+R T L+S   +NM  L+G K P   +L  +
Sbjct: 299 RDESAE-DVRIVIEPKSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDV 357

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++A + +V+VRR+++ L +   R  +L G  IA  NLDEV+RIIR    P+T     
Sbjct: 358 LAEWLAHQRDVLVRRSRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKT----- 412

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                       T  L++ Q  AIL +RL  L  L   +++ E 
Sbjct: 413 ------------------------ELMRTFELTDTQAEAILNMRLRSLRKLEEFELKREF 448

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLD---MED 529
           ++L  E  E   +L+S  R    I  E+  V++          RRT   +          
Sbjct: 449 DTLTGEKAEKEALLASDERQWAGIAAEVREVRETYSKKTKIGRRRTMFADAPNRALDDIT 508

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
              I +E + V +S  G++        R  +      S +  R+ D +   F   T   +
Sbjct: 509 VALIEKEPITVVLSKKGFL--------RGMKGHLADFSSLAFREGDGLQLAFHAMTTDKL 560

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           LF S+ G  +     +LP G  Q         L+    +     + F  D         +
Sbjct: 561 LFLSTGGRAFTHGADKLPGGRGQGEPI----RLAFELEDDQDIALAFVADPERRR----L 612

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             +  GN      +D +   R GK  M +  + ++         + + +  +  + + FP
Sbjct: 613 LVSSDGNGFVASEADMLANTRKGKQLMNVAGKTKLALAAPVGAGDHVAIVGENRKLLVFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +         GVR      G
Sbjct: 673 LVQVPQMT--RGKGVRLQRYKDG 693


>gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G]
          Length = 752

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/722 (32%), Positives = 376/722 (52%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++ SV+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQSVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQSVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
 gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson]
          Length = 757

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 236/758 (31%), Positives = 381/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+ID P   LD L+  ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V + E         V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWNKED-----NSAVITALPHQVSGAKVLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD+Q   R+V+  +      + ++N L+  T L+  + VNM  +    +P+   L
Sbjct: 288 DLRDESDQQNPTRLVVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R + V RR  Y L K   R H+L GL +A  N+D+V+ IIR    P+   
Sbjct: 348 VEILTEWLTYRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                          +  +S+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQSFGISDTQAEAILELKLRHLAKLEEFKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E ++L  E  +   +L+S  +L  ++K+E+ +        RR+ I+E      M + D 
Sbjct: 439 GEQDALVKERDQLQALLASERKLNILLKKEIQADAQAYGDDRRSPIIERAEAKAMNEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +       G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIEPGGLSYKAGDSFRSAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK+ + L    ++L       E++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFICTFNDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNMLLSITAAGRILMFPVT 662

Query: 712 AIRVFAGRNSVGVRGISLAK------GDQVISMAIVLH 743
            +   +     G + +S+         D++  + ++  
Sbjct: 663 DLPQLS--KGKGNKIVSIPATQAATGEDKLAWLLVLPP 698



 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 63/181 (34%), Gaps = 22/181 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S A                 +      L S   +    
Sbjct: 515 RSAKGHDIEPGGLSYKAGDSFRSAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 575 TGKLTPPPGATIEQVL--MAPDDQKLLMASDAGYGFICTFNDLVARNRAGKVMITL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +   ++    ++  D ++L ++  G ++  PV ++   S+           K  ++VS
Sbjct: 629 -PDDAKVLPPIEIHGEDNMLLSITAAGRILMFPVTDLPQLSK----------GKGNKIVS 677

Query: 894 V 894
           +
Sbjct: 678 I 678


>gi|269115286|ref|YP_003303049.1| Topoisomerase IV subunit A [Mycoplasma hominis]
 gi|117582117|gb|AAC33842.2| topoisomerase IV subunit [Mycoplasma hominis ATCC 23114]
 gi|268322911|emb|CAX37646.1| Topoisomerase IV subunit A [Mycoplasma hominis ATCC 23114]
          Length = 933

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 233/733 (31%), Positives = 377/733 (51%), Gaps = 40/733 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +      +E  + I   ++ D M + +  Y+  +I  RAIPD RDGLKPV RRIL+ M
Sbjct: 1   MKKDRKEEIQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++ ++ + K ARI G+V+G+YHPHG+++IY+AL RMAQDW     LIE  GN GS+
Sbjct: 61  WNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL+K +  +L DL +  V   PN+D S  EP+VL A +PN+LVNG  
Sbjct: 121 DDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT IP HNLGEV+D  +A+I NP I ++ L EI++GPDFPTGA+I G   IK A
Sbjct: 181 GIAAGFATEIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGAIINGINEIKKA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQ---IVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            ++G+G I I    H      D  +   I + EIP+ V K+ ++  I  +  +K+I  I 
Sbjct: 241 LSSGQGRITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIK 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++ D++DR G  + I+L+ GA+AD I+  L   T L   +S NMVA++  +P    L   
Sbjct: 301 EVLDQTDRNGISIFIQLEDGANADAIIAYLMNKTELSISYSYNMVAIDNNRPVILNLYSA 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L A+++  +EV +    Y L K + R  ++ G        DEV+ +I+ S N +      
Sbjct: 361 LIAYLSHLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKK----- 415

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                  +        SE+Q  AI ELRL +L+ + + + + E 
Sbjct: 416 --------------------GVILALMNKFKFSELQATAIAELRLYKLSRMDQIEFQEEK 455

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVR 535
            +L I+I+ C  +L+ +      + ++LL +K++   PR T I +     +++ +     
Sbjct: 456 KNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDKEIDHKLLTKN 515

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED  + ++  GY K++ L VY +        S   +++ED V     V++ + +LFF++L
Sbjct: 516 EDFYLYITKDGYYKKISLKVYTSN-----ELSTFKLKEEDNVFYFDKVNSLSKILFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +          + +  G+ + +I++L   E+I  ++      +  N    +  +K G
Sbjct: 571 GNYFIIDCHLFKDCNWKDLGQHISSIVALESSEKIIRVIEITSFNNYAN---FILMSKLG 627

Query: 656 NVRRNKLSDFIQINR-SGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAI 713
             ++  L DF   +    K  M      DE++  +    E  + +    G       + +
Sbjct: 628 YAKKVNLRDFENKSSLKTKTCMSFKDDNDELIDAQISNDEKMLFILLNNGMYHLVSENEL 687

Query: 714 RVFAGRNSVGVRG 726
           +V     + G+R 
Sbjct: 688 KVGISLKARGIRL 700


>gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
 gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1]
          Length = 757

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/752 (31%), Positives = 376/752 (50%), Gaps = 68/752 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TV+++PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID P   L+ L++I++GPD+PT   +I  R  I+  Y TGRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI  R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SIRQRAVWKKEEGE-----VVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      D ++N L+  T L+  + VN+  +    +P    L  IL  ++ 
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLV 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+            
Sbjct: 357 FRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPK------------ 404

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    +SE Q  +ILEL+L  L  L    IR E   L  E
Sbjct: 405 -----------------PVLMSRFGISETQAESILELKLRHLAKLEEMKIRGEQADLEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +    L+S  ++  ++K+EL +        RR+ + E        + + +  E + + 
Sbjct: 448 RDQLQATLASERKMNTLLKKELQADSASYGDERRSPLCEREEAKALSETELVPSEPVTIV 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y  
Sbjct: 508 LSQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    Q           L             +     ++  ++ A+  G      
Sbjct: 560 DPTSLPSARGQGE--------PLTGKLTPPPGAVVEQVLMEPDDQRLLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            SD I  NR+GK  + L     ++  +    +++ +L  T+ G+ + FP+  +   +   
Sbjct: 612 FSDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMS--K 669

Query: 721 SVGVRGISL------AKGDQVISMAIVLHADA 746
             G + IS+      A  D++  + I+    A
Sbjct: 670 GKGNKIISIPSAEAAAGQDKLAWLMILPPGSA 701



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  ++ A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 575 TGKLTPPPGAVVEQVL--MEPDDQRLLMASDAGYGFICTFSDLISRNRAGKALLTLPDNA 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
                 ++    V+  D ++L ++  G ++  PV E+   S+  KG  I S       A 
Sbjct: 633 R-----VMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSK-GKGNKIISIPSAEAAAG 686

Query: 888 DERVVSVERIRE 899
            +++  +  +  
Sbjct: 687 QDKLAWLMILPP 698


>gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2]
 gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
 gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1]
 gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719]
 gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58]
 gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016]
          Length = 754

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 237/747 (31%), Positives = 379/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 QKVYETGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L++ + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P   +
Sbjct: 351 RQLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSEVQ   IL+ RL +L  L    IR
Sbjct: 408 AVLMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E K    +L S ++L  ++++EL+   +     RR+ IV         + + 
Sbjct: 442 GEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLPAHSLPSA--RGQGEPLSGRLTPPPGASFECVLL------PDDDALFVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +   +++        ++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 44.4 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD            ++           S      S  +     
Sbjct: 518 RCAKGHDIDAAGLSYKAGD---GFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQG 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L   +  +  + S+ G+G      D +  N++GK + +    
Sbjct: 575 EPLSGRLTPPPGASFECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSL--- 631

Query: 834 KINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                 A+VA  PV D   D +  V+ +G L+   V+++    +  KG  I      ERV
Sbjct: 632 --PNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK-GKGNKIIGI-PGERV 687

Query: 892 VS 893
            S
Sbjct: 688 AS 689


>gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440]
 gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440]
          Length = 752

 Score =  545 bits (1405), Expect = e-153,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 381/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   ++  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A 
Sbjct: 351 RTLLVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                          LI+                L+E+Q   ILE RL +L  L    IR
Sbjct: 410 ---------------LIER-------------FELTEIQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S ++L  +++ EL+   +     RR+ IV         + + 
Sbjct: 442 GEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +  
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLL------PDDDALYVVAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  GD+V S
Sbjct: 666 SDLPQLG--KGKGNKIIGV-PGDRVAS 689



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 18/183 (9%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD   + A                 +  A   L S   +        +   G  
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E  C  L   +   +  S+ G+G      D +  N++GKG+ +           ++   
Sbjct: 589 FE--CVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL-----PNGAKVMTPR 641

Query: 846 PV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS-------VER 896
           PV   + D +  V+ +G L+   V+++    +  KG  I      +RV S       +  
Sbjct: 642 PVADREQDWLAAVTTEGRLLVFKVSDLPQLGK-GKGNKIIGV-PGDRVASREEFVTDLAV 699

Query: 897 IRE 899
           I E
Sbjct: 700 IPE 702


>gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1]
          Length = 752

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 381/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   ++  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A 
Sbjct: 351 RTILVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                          LI+                L+E+Q   ILE RL +L  L    IR
Sbjct: 410 ---------------LIER-------------FELTEIQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S ++L  +++ EL+   +     RR+ IV         + + 
Sbjct: 442 GEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +  
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLL------PDDDALYVVAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  GD+V S
Sbjct: 666 SDLPQLG--KGKGNKIIGV-PGDRVAS 689



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 18/183 (9%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD   + A                 +  A   L S   +        +   G  
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E  C  L   +   +  S+ G+G      D +  N++GKG+ +           ++   
Sbjct: 589 FE--CVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL-----PNGAKVMTPR 641

Query: 846 PV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS-------VER 896
           PV   + D +  V+ +G L+   V+++    +  KG  I      +RV S       +  
Sbjct: 642 PVADREQDWLAAVTTEGRLLVFKVSDLPQLGK-GKGNKIIGV-PGDRVASREEFVTDLAV 699

Query: 897 IRE 899
           I E
Sbjct: 700 IPE 702


>gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa]
          Length = 754

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/747 (31%), Positives = 377/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V   E        IV+  +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 QKVYETGRGSVRMRAVYRFEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L++ + VN+  +    KP    L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P   +
Sbjct: 351 RQLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSEVQ   IL+ RL +L  L    IR
Sbjct: 408 AVLMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E K    +L S ++L  ++++EL+   +     RR+ IV         + + 
Sbjct: 442 GEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLPAHSLPSA--RGQGEPLSGRLTPPPGASFECVLL------PDDDALFVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +   +++        ++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 44.4 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD            ++           S      S  +     
Sbjct: 518 RCAKGHDIDAAGLSYKAGD---GFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQG 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L   +  +  + S+ G+G      D +  N++GK + +    
Sbjct: 575 EPLSGRLTPPPGASFECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSL--- 631

Query: 834 KINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                 A+VA  PV D   D +  V+ +G L+   V+++    +  KG  I      ERV
Sbjct: 632 --PNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK-GKGNKIIGI-PGERV 687

Query: 892 VS 893
            S
Sbjct: 688 AS 689


>gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
 gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641]
          Length = 757

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/758 (31%), Positives = 377/758 (49%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFAISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPDSQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    ++L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D+++ + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPAADAAAGKDRLVWLFVLPP 698



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 72/230 (31%), Gaps = 28/230 (12%)

Query: 692 QENDILLTTKLGQCVRFPISAIRV---------FAG--RNSVGV----RGISLAKGDQVI 736
            ++     T+ G+        I             G  R++ G      G+S   GD   
Sbjct: 477 GDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAGDSFR 536

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           + A                 +      L S   +        +   G   E+    +   
Sbjct: 537 AAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVL--MAPD 594

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            Q +L  S+ G+G   +  D    NR+GK          N    L  +     +D ++ +
Sbjct: 595 SQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLPENAK-VLPPLEIYGPDDMLLSI 650

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           +  G ++  PV ++   S+  KG  I S       A  +R+V +  +   
Sbjct: 651 TAAGRMLMFPVADLPELSK-GKGNKIVSIPAADAAAGKDRLVWLFVLPPQ 699


>gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
 gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1]
          Length = 752

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 381/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   ++  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR    P+ A 
Sbjct: 351 RTILVEWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                          LI+                L+E+Q   ILE RL +L  L    IR
Sbjct: 410 ---------------LIER-------------FELTEIQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S ++L  +++ EL+   +     RR+ IV         + + 
Sbjct: 442 GEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +  
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLL------PDDDALYVVAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++++       +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQDWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  GD+V S
Sbjct: 666 SDLPQLG--KGKGNKIIGV-PGDRVAS 689



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 18/183 (9%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD   + A                 +  A   L S   +        +   G  
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E  C  L   +   +  S+ G+G      D +  N++GKG+ +           ++   
Sbjct: 589 FE--CVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL-----PNGAKVMTPR 641

Query: 846 PV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS-------VER 896
           PV   + D +  V+ +G L+   V+++    +  KG  I      +RV S       +  
Sbjct: 642 PVADREQDWLAAVTTEGRLLVFKVSDLPQLGK-GKGNKIIGV-PGDRVASREEFVTDLAV 699

Query: 897 IRE 899
           I E
Sbjct: 700 IPE 702


>gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
 gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1]
          Length = 750

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 231/743 (31%), Positives = 370/743 (49%), Gaps = 61/743 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+     ++     + +      + + YL YA++ I  R++PD+RDGLKPVHRR+L+ M
Sbjct: 1   MTDIAELPEDS----VRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + ++    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQ +SLR  L++GQGNFG+V
Sbjct: 57  RLLRLDPASGYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL  AA  L+  L + TVDFRP Y+G  +EP +    +PN+L NG  
Sbjct: 117 DGDNAAAMRYTEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT+IP HN+ E++D  V +ID P+ +   L++ ++GPDFPTG V++     I  
Sbjct: 177 GIAVGMATSIPPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAE 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AYATGRG+  +R         G    +VV++IPYQV K+ ++E+IAEL+ +K++  +AD+
Sbjct: 237 AYATGRGAFRVRAKIEKVDEKGGGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADV 296

Query: 300 RDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGI 357
           RDESD +  R+V+E + R   AD+++  L+R T L+   S+N+  L+  +     +L   
Sbjct: 297 RDESDEE-IRIVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQA 355

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L A++  + EV++RR+++ L K  DR  +L G  I   NLD V++IIR    P+      
Sbjct: 356 LAAWLKHQFEVLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEPK------ 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                                          L++ Q  AIL +RL  L  L   ++  E 
Sbjct: 410 -----------------------PVMMAEFGLTDRQAEAILNMRLRSLRRLEEMELTRER 446

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--E 530
            +L  E KE   +++S +R    +K++L ++++          RRT + E     E   E
Sbjct: 447 ATLDAEGKELEALIASPARQRTRMKRDLAALRERYGPETALGARRTLLSEAAPAREIPLE 506

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             + RE + V +S  G+++ +   +  A +   K       ++ D         T   +L
Sbjct: 507 AMVEREPVTVILSQRGWIRAMKGHLDEAAQAAVK------FKEGDGPAHAIRAQTTDRIL 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +  G  Y     +LP G        L   +  +               ++     ++ 
Sbjct: 561 LATDQGRFYTLPADKLPGGRGFGEPVRLFADIDADAR--------VAALLAAKPGAELLL 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFP 709
           A+  G      ++D     R GK  + L     +  V      ++ +       + V FP
Sbjct: 613 ASGDGKGFVVDMADVTAETRKGKQVVNLREGGRLKVVHPVAPTDDYVAAIGDNRKMVIFP 672

Query: 710 ISAIRVFAGRNSVGVRGISLAKG 732
           +  +   A     GV       G
Sbjct: 673 LGELPRMA--RGQGVTIQRYKDG 693


>gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863]
          Length = 752

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFVTTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNKLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116]
 gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116]
          Length = 762

 Score =  545 bits (1405), Expect = e-152,   Method: Composition-based stats.
 Identities = 243/745 (32%), Positives = 399/745 (53%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  K      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLERLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +FF S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAEGLSYKSGDKYLAHARGKSNQQAVFFGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSNIRQVIMGEEEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K S+ +  NRSGK  + L +  E+++ +T      ++IL  T  G+ + FPI  +   A
Sbjct: 611 CKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEILAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      + ++V+S
Sbjct: 671 --KGKGNKIINIPAAKAKEREEVLS 693



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      +    NRSGK +     +        +A  
Sbjct: 585 SNIRQVIMGEEEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 645 ---DSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 693


>gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
 gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A]
          Length = 752

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E +    E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSEREKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061]
 gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC
           19061]
          Length = 750

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 242/801 (30%), Positives = 390/801 (48%), Gaps = 70/801 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    +A++D P++ LD  ME I+GPD+PT   +I  +  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVASALIAMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E+ +     +++T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYKNGRGSVRMRAIWSKEEGN-----VIITALPHQVSGAKVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDVEQVMNHLFATTDLERSYRVNLNMIGLDNRPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R E V  R  + L K   R H+L GL  A  N+DEV+ +IR    P+   
Sbjct: 348 VEILSEWLVYRRETVRNRLNHRLEKVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E Q  A+LEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFGLTETQAEAVLELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL S  +L  ++K+E+++  +     RR+ + E +    M D D 
Sbjct: 439 GEQDELSKERDKLQSILGSERKLNTLLKKEIIADAESYGDDRRSPLKERIEAKAMSDHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 LPSEPITVVMSEMGWV--------RSAKGHEIDPAGLNYKSGDSFRSAVRGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    + +G+ L   L+L  G              +      + A+
Sbjct: 551 DTTGRSYSVDPLDLPSA--RGQGEPLTGKLALPAGA------LVEHLLMAKEEQKFLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       SD I  NR+GK  + L    +++       E D  +L  TK G+ + FP+
Sbjct: 603 DAGYGFICTFSDLIAKNRAGKALITLPENAKVMEPLEINNEQDEMLLAITKAGRMLMFPV 662

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S +   +     G + +S+     V     +        +    +     + +L   D +
Sbjct: 663 SDLPQLS--KGKGNKIVSIPAAQAVSGEDTLSWLLVLSPQSTITLYFGKRKLQLRPEDLQ 720

Query: 771 EITSLKNDSSVEGNISEERCQ 791
           +  + +           +R +
Sbjct: 721 KFRAERGRKGTSLPRGLQRVE 741



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 21/181 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   S   V          I       +   L          
Sbjct: 515 RSAKGHEIDPAGLNYKSGDSFRSA--VRGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +  +EQ  L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 573 PLTGKLALPAGALVEHLLMAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENA 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                    +   N+ D+++L ++  G ++  PV+++   S+           K  ++VS
Sbjct: 633 KVME----PLEINNEQDEMLLAITKAGRMLMFPVSDLPQLSK----------GKGNKIVS 678

Query: 894 V 894
           +
Sbjct: 679 I 679


>gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
 gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197]
          Length = 752

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DE++ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRCEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  I+         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHIL------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHILMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
 gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM
           4582]
          Length = 757

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 248/751 (33%), Positives = 379/751 (50%), Gaps = 74/751 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+ID P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VNM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++AFR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEIITEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFGISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADSLAYGDERRSPLTERAEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         T+  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDTFRAAARGKTNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVIMAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK+ + L    + L       ++D +L  TK G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKVMITLPENAKALPPMEIHGDDDMLLSITKAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL-----AKGDQVIS 737
            +   +     G + +S+     A G+ V+S
Sbjct: 663 DLPQLS--KGKGNKIVSIPSAQAASGEDVLS 691



 Score = 47.9 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 78/235 (33%), Gaps = 32/235 (13%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV--- 724
           +    A  L   DE  S    T+  +    ++       P++ +    G  R++ G    
Sbjct: 466 KKEIQADSLAYGDERRSPL--TERAEAKAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDID 523

Query: 725 -RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             G+S   GD   + A                 +      L S   +        +   G
Sbjct: 524 PSGLSYKAGDTFRAAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPG 583

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E+    +   +Q +L  S+ G+G   +  D    NR+GK          N       
Sbjct: 584 ATIEQVI--MAADDQKLLMASDAGYGFVCTFNDLVARNRAGK---VMITLPEN-----AK 633

Query: 844 VFP---VNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             P   ++ +D ++L ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 634 ALPPMEIHGDDDMLLSITKAGRMLMFPVADLPQLSK----------GKGNKIVSI 678


>gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
 gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17]
          Length = 768

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 249/761 (32%), Positives = 387/761 (50%), Gaps = 74/761 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +   +  ++G   V++ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G+
Sbjct: 1   MPEFQTTDEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP 
Sbjct: 61  KSTSKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL + A  LL +LG+ T D+ PN+DG+  EP +L AR P+VL+NG  GIA
Sbjct: 120 SFAAMRYTESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HN+ EV   CV ++  PD  ++ L E I+GPD+PT   +I  R  +   Y 
Sbjct: 180 VGMATDIPPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R     E        +V+T++P+QV+   +LE+IA+ ++ K++  +ADLRDE
Sbjct: 240 TGRGSLRMRARWVNEGGD-----LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           SD +   R+VI  +     A+ ++  L+  T L+  + VN+  + N  +P    L+ +L 
Sbjct: 295 SDHENPTRLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V+RR +Y L+K   R H+L GL IA  NLDEV+ IIR+   P   + ELM 
Sbjct: 355 EWLTFRRATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKP---KAELMV 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS  Q  AILEL+L  L  L    IR E + 
Sbjct: 412 R--------------------------FSLSADQAEAILELKLRHLAKLEEMKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVRED 537
           L IE      IL S  +L  +IK EL    +     RR+ IVE        + D +  + 
Sbjct: 446 LAIERDHLQSILGSEKKLRQLIKTELQQDAETYGDDRRSPIVERGESRAFSNIDLVSNDP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +       G+  +  D  +       +  V+F  S G 
Sbjct: 506 VTVVLSEKGWV--------RAAKGHDIDPLGLSYKAGDKFSLQAHGRNNQQVIFLDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP    + +G+ L   ++   G +   ++         +   VV  T  G  
Sbjct: 558 AYALMAHSLPSA--RGQGEPLSGHINPPPGAQFCGLL------MGDSQRKVVLVTDGGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDE---ILSVETCTQEN----DILLTTKLGQCVRFPI 710
               L D +  NR+GK  + +         + V     E+     +   +  G+ + FP+
Sbjct: 610 FATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPESRETLYLAAVSNEGRMLVFPL 669

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHAD 745
           + +         G + IS+      ++ + V+++A+  H+D
Sbjct: 670 TELPELV--KGKGNKLISIPSARVQSRDEFVVAVAVFAHSD 708


>gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
 gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231]
          Length = 747

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/743 (31%), Positives = 362/743 (48%), Gaps = 66/743 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            +  + +  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+    KY K AR
Sbjct: 9   ETQPLREFTEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKYKKSAR 68

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYTECRL 135
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D     AA RYTE RL
Sbjct: 69  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADEPKSFAAMRYTEARL 128

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + A  LL +LG+ TV++ PN+DG+ +EP +L AR PN+L+NG  GIAVGMAT+IP HNL
Sbjct: 129 TRYAQLLLTELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDIPPHNL 188

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVS 254
            EVV  C+ ++D PD  +  L E I GPDFPT   +I     I+  Y  G G +  R   
Sbjct: 189 REVVAACIHLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLRQRACW 248

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIE 313
                  D   IV+T +PYQV+ + +LE+IA  ++ K++  + DLRDESD     R++I 
Sbjct: 249 ER-----DGLDIVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPTRLIIT 303

Query: 314 LKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
            +     A+ ++  L+  T L+  + VN+  +    +P    L  IL  ++ FR E V R
Sbjct: 304 PRSARVDAEPLMQHLFATTDLEKTYRVNLNVIGLDARPRVRNLREILTEWLRFRTETVCR 363

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R ++ L+K   R H+L G  IA  N+DEV+ IIR    P+                    
Sbjct: 364 RLQWRLDKVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPK-------------------- 403

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                    +       L+E Q  AILELRL  L  L    I  E + L  E      IL
Sbjct: 404 ---------LVLMERFGLTERQAEAILELRLRHLAKLEEIKIHAEQDELLRERDRLRSIL 454

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVK 549
           +S +RL  +IK EL     +   PR + +V+        D + +  E + + +S  G++ 
Sbjct: 455 NSEARLKALIKSELQEDAQKYGDPRCSPLVQRGSARALSDTELVPSEPVTLVLSQRGWI- 513

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +        +  +  D   D  I  T+   +F  S G  Y      LP  
Sbjct: 514 -------RAAKGHDVDAQRLSYKAGDGYRDAAIGRTNQQAVFLDSQGRAYSLPAHTLPSA 566

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             + +G+ L   LSL  G   + ++    D         + A+ HG     +L +    N
Sbjct: 567 --RGQGEPLTGRLSLPGGGEFSYVLLGDPDSLW------LLASDHGYGFITRLGNLYSKN 618

Query: 670 RSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           R+GK  + +    + L         ++ ++  T  G+ + FP+  +         G + I
Sbjct: 619 RAGKAVLSVAGGAQPLKPARIYALAQDRLVAATTAGRLLVFPLQELPELG--KGKGNKLI 676

Query: 728 -----SLAKGDQVISMAIVLHAD 745
                 L   ++V++  + +   
Sbjct: 677 QIPSPRLKTREEVVAGVLAVPPG 699


>gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
 gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054]
 gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424]
          Length = 773

 Score =  545 bits (1404), Expect = e-152,   Method: Composition-based stats.
 Identities = 255/812 (31%), Positives = 386/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++        D  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFASPDAPESDALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR S  P+ A                                   LSE Q 
Sbjct: 418 LNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+        
Sbjct: 613 -LMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + +  +
Sbjct: 731 GGKPQDDTLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--APADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 713


>gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3]
 gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Burkholderia cenocepacia PC184]
 gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3]
          Length = 773

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 254/812 (31%), Positives = 386/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++        D  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFASPDAPESDALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR S  P+ A                                   LSE Q 
Sbjct: 418 LNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+        
Sbjct: 613 -LMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  +         
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPSGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + +  +
Sbjct: 731 GGKVQDETLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 6/175 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--APADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V    I  S
Sbjct: 667 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLVQALAIDPS 721


>gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
 gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192]
          Length = 754

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/747 (31%), Positives = 379/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 QKVYETGRGSVRMRAVYRVEDGD-----IVIQALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L++ + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P   +
Sbjct: 351 RQLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSEVQ   IL+ RL +L  L    IR
Sbjct: 408 AVLMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E K    +L S ++L  ++++EL+   +     RR+ IV         + + 
Sbjct: 442 GEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLPAHSLPSA--RGQGEPLSGRLTPPPGASFECVLL------PDDDALFVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +   +++        ++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 44.4 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD            ++           S      S  +     
Sbjct: 518 RCAKGHDIDAAGLSYKAGD---GFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQG 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L   +  +  + S+ G+G      D +  N++GK + +    
Sbjct: 575 EPLSGRLTPPPGASFECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSL--- 631

Query: 834 KINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                 A+VA  PV D   D +  V+ +G L+   V+++    +  KG  I      ERV
Sbjct: 632 --PNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK-GKGNKIIGI-PGERV 687

Query: 892 VS 893
            S
Sbjct: 688 AS 689


>gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469]
 gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469]
 gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253]
 gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227]
          Length = 752

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 234/722 (32%), Positives = 376/722 (52%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   L+ L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKAGDSYKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ +   L+L  G  I  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPVTGKLTLPPGATIDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++      ++ + +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRTGKAMITLPENARVMPPLVIRSETDMLLAITHAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 5/151 (3%)

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
           A V          +       A   +                     +      ++  +Q
Sbjct: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPVTGKLTLPPGATIDHMLMESDDQ 592

Query: 799 FILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSD 858
            +L  S+ G+G   +  D    NR+GK +     +       ++      + D ++ ++ 
Sbjct: 593 KLLMASDAGYGFVCTFNDLVARNRTGKAMITLPENARVMPPLVIRS----ETDMLLAITH 648

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            G ++  PV+++   S+  KG  I +    E
Sbjct: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
 gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046]
          Length = 752

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 237/722 (32%), Positives = 376/722 (52%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++ SV+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKVAVKGKSNQSVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 59/176 (33%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD       V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFK--VAVKGKSNQSVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
 gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1]
          Length = 752

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +        ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMAQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
 gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94]
 gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10]
 gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1]
          Length = 770

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 246/765 (32%), Positives = 390/765 (50%), Gaps = 83/765 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+A D+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 449

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT- 514
           +IL +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++    
Sbjct: 450 SILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPT 509

Query: 515 ----PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                RRT         L+   +  I RE + + VS  G++        RA +      S
Sbjct: 510 TRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFS 561

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            +  ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   
Sbjct: 562 TLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMEND 619

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           + I T            +  ++  +  GN      S+ +   R GK  M + + DE    
Sbjct: 620 QDILTAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLC 673

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + I +  +  + + FP+S I         GVR      G
Sbjct: 674 QRVSG-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 715


>gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007]
          Length = 752

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
 gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1]
          Length = 752

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN]
 gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN]
          Length = 774

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 263/813 (32%), Positives = 389/813 (47%), Gaps = 72/813 (8%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +        E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF
Sbjct: 1   MDDDNTLDLFTEPPPPEGDFLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFG
Sbjct: 61  AMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGS +EP +L AR P VL+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMPNYDGSSEEPRLLPARLPFVLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GI 237
             GIAVG+AT IP+HNL EV    VA+I NP I+   LM+ I GPDFP GA I+     I
Sbjct: 181 ASGIAVGLATEIPSHNLREVAAATVAMIRNPKIEHAELMQHIAGPDFPGGAQIISSDAEI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY +GRGS+ +R    IE+ +  + Q+V+TE+P       +LE+I E    K  +   
Sbjct: 241 SAAYESGRGSLKVRARWKIEELARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKK 300

Query: 298 ------------------DLRDESDRQG-YRVVIELKRGASADV-ILNQLYRYTSLQSLF 337
                              +RDES R    R+V E K         +N L  YTSL+S  
Sbjct: 301 ALTPEQLQTKQTMLALLDAVRDESGRDAPVRLVFEPKSSRIDQTDFVNTLLAYTSLESNA 360

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NMV +    +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I   N
Sbjct: 361 SLNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+RIIR S  P+ A                                   LS+ Q   
Sbjct: 421 IDEVIRIIRESDEPKVA-----------------------------LMAAFGLSDRQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E  +  ++L S S +  ++ +E+     +    R
Sbjct: 452 ILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGSESAMKRLLIKEIEGDAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  +V E + V VS  G+V        RA +  G   +G   +  D 
Sbjct: 512 RT-LIQQEKRATFEARVVDEPVTVVVSQKGWV--------RALKGHGLDVAGFTFKAGDG 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++ + S G VY   V  LP G     G  + +++ L  G         
Sbjct: 563 LYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGD--GVPVTSLIELESGSH------L 614

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
               ++     ++ A+ +G     K+ D +   ++GK  M +D+    L       +   
Sbjct: 615 LHYYAASAEQALLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLKPMPMLPDATH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I   +  G+ + F I  ++  +G    GV  ++L   + ++    + +A           
Sbjct: 675 IACLSSGGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALSINNAGVVLIGTRRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +    +    +         +   + E  +  E
Sbjct: 734 RVDEEKVSGAALAPHIGKRARKGRAPESKMKLE 766



 Score = 44.8 bits (104), Expect = 0.073,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 11/182 (6%)

Query: 713 IRVFAGRNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +R   G    G  V G +   GD + +       D           +  A   L  G  +
Sbjct: 542 VRALKG---HGLDVAGFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGD 598

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
            +          G+            EQ +L  S  GFG      D     ++GK     
Sbjct: 599 GVPVTSLIELESGSHLLHYYA--ASAEQALLLASSNGFGFVAKVGDMVSRVKAGKSFMTI 656

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
           D         L  +  + D   I  +S  G L+   ++E++  S   +GV + +    E 
Sbjct: 657 DAGAA----PLKPMPMLPDATHIACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDDKET 712

Query: 891 VV 892
           +V
Sbjct: 713 LV 714


>gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
 gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M]
          Length = 774

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/813 (31%), Positives = 377/813 (46%), Gaps = 72/813 (8%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +        E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF
Sbjct: 1   MDDDNTLDLFTEPPPPEGDFLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFG
Sbjct: 61  AMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   A  LL ++ + TVDF  NYDG F EP +L AR P VL+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPIAKLLLAEIDQGTVDFMKNYDGEFDEPRLLPARLPFVLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GI 237
             GIAVG+AT IP+HNL EV    VA+I NP I    LME + GPDFP G  I+     I
Sbjct: 181 ASGIAVGLATEIPSHNLREVAAATVAMIRNPKITHAELMEHVPGPDFPGGGQIISSEAEI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY TGRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E    K  +   
Sbjct: 241 SAAYETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQTNPKIKLGKK 300

Query: 298 DLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLF 337
            L  E                         R+V E K         +N L  +TSL+S  
Sbjct: 301 ALTPEQLQGKQTMLGLLDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNA 360

Query: 338 SVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+NMV +    +P +  L  IL  ++AFR   V RRT++ L K  DR H+L G  I   N
Sbjct: 361 SLNMVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLTKVDDRIHILEGRMIVFLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+RIIR S  P+ A                                   LS+ Q   
Sbjct: 421 IDEVIRIIRESDEPKVA-----------------------------LMAAFGLSDRQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E  +  ++L S S +  ++ +E+ +   +    R
Sbjct: 452 ILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGSESAMKRLLIKEVEADAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  +V E + V VS  G+V        RA +  G   +G   +  D 
Sbjct: 512 RT-LIQQEKRATYEARVVDEPVTVVVSQKGWV--------RALKGHGLDTAGFTFKAGDS 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++ + S G VY   V  LP G            + +     + +    
Sbjct: 563 LYAAFQCRTPDTLIAWGSNGRVYSVAVASLPGGRGDG--------VPVTSLIEMESGSHL 614

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
               ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+      +   
Sbjct: 615 MHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDATQ 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           +   +  G+ + F I  ++  +G    GV  ++L   + ++    +  A           
Sbjct: 675 VACLSSAGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQALAINAAGVMLIGARRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +    +    +         +   + E  +  E
Sbjct: 734 RLDEEKLSGAALAAHVGKRARKGRAPESKLKLE 766



 Score = 44.8 bits (104), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +  A   L  G  + +          G+ 
Sbjct: 554 GFTFKAGDSLYAAFQCRTPDTLIAWGSNGRVYSVAVASLPGGRGDGVPVTSLIEMESGSH 613

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 614 LMHYYA--ASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAA----PLAPMP 667

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + D  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 668 MLPDATQVACLSSAGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 714


>gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83]
          Length = 752

 Score =  545 bits (1403), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSLMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 15/188 (7%)

Query: 709 PISAIRVFAG--RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           P++ +    G  R++ G      G++   GD   +   V          +       A  
Sbjct: 499 PVTIVLSLMGWVRSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAID 556

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
            +                     +      ++  +Q +L  S+ G+G   +  D    NR
Sbjct: 557 PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 616

Query: 823 SGKGIRATDVSKINEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           +GK +         E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  
Sbjct: 617 AGKALITL-----PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNK 670

Query: 882 IFSTAKDE 889
           I +    E
Sbjct: 671 IINIPSAE 678


>gi|121511862|gb|ABM55382.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511864|gb|ABM55383.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511866|gb|ABM55384.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511868|gb|ABM55385.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511870|gb|ABM55386.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|121511872|gb|ABM55387.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 660

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 290/745 (38%), Positives = 435/745 (58%), Gaps = 87/745 (11%)

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTV+F PNYD + +EP VL  R P +L+NG  GIAVGMAT IP HNLGE+++  + +I
Sbjct: 1   DKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMATKIPPHNLGELLEAILYLI 60

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           D P+   D LM+ ++GPDFPTG  I GR GI +AY TGRG + IR   HIE     +E I
Sbjct: 61  DTPEATADELMQFVQGPDFPTGGTIFGRRGIIDAYNTGRGRVRIRAKHHIET-KAKKEII 119

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           V+ E+PYQVNKA ++E IA L ++K+I  I+++RDESDR+G RVVIELK+ A ++++LN 
Sbjct: 120 VIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREGIRVVIELKKDAMSEIVLNN 179

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           LY+ T +++ F + ++A+   +P+ F L  IL  F++ R+ V++RRT + L KA+ RAH+
Sbjct: 180 LYKSTPMETTFGIILLAVYNKEPKVFNLPQILNIFLSHRKTVIIRRTIFDLEKAKARAHI 239

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           L GL IAV N+DEVVRIIR S N   A+  L  R                          
Sbjct: 240 LEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETR-------------------------- 273

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             LS +Q++AIL++RL RLTGL RD +  E   L I I E   IL S  +L  II++EL 
Sbjct: 274 FDLSAIQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELT 333

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            +K++    R+T I +   +++ ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+
Sbjct: 334 EIKEKFSNDRKTEIEDSYDEIDIEDLIPNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGK 393

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
             V   D+DF+   F+ +TH +++F +++G +Y  KV+++P GS  A+GKA++N+++L  
Sbjct: 394 VAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIAKGKAVVNLINLRP 453

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
            E+I  I+P P+ +    +  +VF T++G ++R  L++F  I  +G  A+ LD  DEI++
Sbjct: 454 DEKIMEIIPTPDFD---ESKSLVFFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVT 510

Query: 687 VETCT-QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHA 744
            +    +   I++ T LGQC+RF +   R   GR++ GVRGI      D V+   ++   
Sbjct: 511 AKIADVETQYIMIFTSLGQCIRFELEKTRD-QGRSTRGVRGIKFKIDTDFVVDADVISSE 569

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           D                                                    Q ILTVS
Sbjct: 570 D----------------------------------------------------QEILTVS 577

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           EKG GKRT+  ++R++NR+G G+ +  +S   + G ++    V+D   ++L++  G +IR
Sbjct: 578 EKGIGKRTTVEEYRLTNRAGSGVISMKLST--KTGNVIGEVLVDDTQDLMLLTSIGKMIR 635

Query: 865 VPVNEIRIASRATKGVVIFSTAKDE 889
           V +N IR A R T GV+I +   ++
Sbjct: 636 VDMNTIRKAGRNTSGVIIVNVDSND 660



 Score = 98.3 bits (243), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 91/268 (33%), Gaps = 63/268 (23%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 361 PNEPMVVTITHNGYVKRVPIKAYEKQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 420

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  M I+   D D          
Sbjct: 421 NMGQLYWLKVYKI-PEGSRIAKGKAVVNLINLRPDEKI--MEIIPTPDFD---------- 467

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                 + + ++  +  G  KRTS  +F
Sbjct: 468 --------------------------------------ESKSLVFFTRNGIIKRTSLNEF 489

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRA 876
             SN    G+RA  +   ++   +V     + +   I++ +  G  IR  + + R   R+
Sbjct: 490 --SNIRSNGVRAIVL---DDADEIVTAKIADVETQYIMIFTSLGQCIRFELEKTRDQGRS 544

Query: 877 TKGVVIFSTA-KDERVVSVERIRESEIV 903
           T+GV         + VV  + I   +  
Sbjct: 545 TRGVRGIKFKIDTDFVVDADVISSEDQE 572


>gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 751

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 243/757 (32%), Positives = 372/757 (49%), Gaps = 69/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +       +      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  KATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAIYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G GSI +R +   EK     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDE
Sbjct: 240 SGNGSIKMRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI  +      + +++ L+  T L+  + VN   +    KP    L+ IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P+        
Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQPKQ------- 407

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                 G      L+E Q  AILE++L  L  L    +R EL+ 
Sbjct: 408 ----------------------GLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E       L+S S L  ++K+E+   +DE   PR + I+        ++ED +  E 
Sbjct: 446 LSDERDTLQKTLASHSLLKELVKEEITKDRDEFGDPRLSPIITREDSQALKEEDILPNEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  T+  VLFF   G 
Sbjct: 506 ITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGK 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY      LP    Q           L         + F           V+ AT  G  
Sbjct: 558 VYSLPGHVLPSARGQGE--------PLTGKLNPAEGVLFEAIVGGEPEQKVLLATDSGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              K+ D    NR+GK  +KL     IL            +   T +G+ + F +  +  
Sbjct: 610 FIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +     G + IS+      ++ + ++ M ++   D+
Sbjct: 670 LS--RGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS 704



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+  +  +                +      L S   +    
Sbjct: 517 RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + E         EQ +L  ++ G+G      D  + NR+GK      +S+
Sbjct: 577 TGKLNPAEGVLFEAIVG--GEPEQKVLLATDSGYGFIAKIEDLYVKNRNGK--ACIKLSE 632

Query: 835 INEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TA 886
            +    ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +
Sbjct: 633 NS---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSR-GKGNKLISIPVAKAVS 688

Query: 887 KDERVVSVERIRESE 901
           ++E +V ++ +  ++
Sbjct: 689 REEYIVDMQVLTTND 703


>gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82]
          Length = 752

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L  R PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
 gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25]
 gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25]
          Length = 761

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/745 (32%), Positives = 396/745 (53%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  K      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMSEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + FPI  +   A
Sbjct: 611 CKGADLLSKNRSGKALVTLPANSEVMTPKAIEDLDSDEILAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      + ++V+S
Sbjct: 671 --KGKGNKIINIPAAKAKEREEVLS 693



 Score = 45.2 bits (105), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  ++Q  L  S+ G+G      D    NRSGK   A      N    ++   
Sbjct: 585 SSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGK---ALVTLPANS--EVMTPK 639

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
            + D  +D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 640 AIEDLDSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 693


>gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 752

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Thiomonas sp. 3As]
          Length = 777

 Score =  544 bits (1402), Expect = e-152,   Method: Composition-based stats.
 Identities = 245/795 (30%), Positives = 374/795 (47%), Gaps = 79/795 (9%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+E   +  D   E    S+++ D  + +YL YAI+V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSEQATLEFDNRPEDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+G++HPHG+ A YDAL R++Q+++ R  LI+GQGNFGS
Sbjct: 61  MWRMGLTADAKPVKSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LL ++   T DF PNYDGS  EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT IP HNL EV   CVA++ NP ++L   + ++ GPDF TG   I     I 
Sbjct: 181 SGIAVGMATEIPAHNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AYA GRGS+ +R    +E+ +  + Q+V+ E+P+  +   +LE+I EL   K       
Sbjct: 241 AAYAVGRGSLKVRARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKA 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E +         +N L   TSL++   
Sbjct: 301 LAPEQIALKATLLNLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVP 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    KP +  L+ IL+ +VA+R + V RR+K+ L +   R H+L G    + NL
Sbjct: 361 INLVMIGTDGKPRQKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNL 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+  IR S +P  A                                   L+E+Q   I
Sbjct: 421 DEVIETIRNSDDPRPA-----------------------------LMARFDLTELQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           L++RL +L  L    I  EL +   E  E   +L+    +   I  E+ +   +    RR
Sbjct: 452 LDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTRRIISEIEADAKQFGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I      +  E  +V E + V VS  G++        R Q+  G   S +  +  D +
Sbjct: 512 TLIQAEQRAVA-EVKVVDEAVTVIVSQKGWL--------RTQKGHGLVLSALTFKPGDAL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   +   ++   S G  Y   V  LP G     G+ + + + L  G +    +   
Sbjct: 563 YATFECRSVDPLVVLGSDGRAYSIDVADLPGGRGD--GQPVTSFIELAPGTQALHYLA-- 618

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVETCTQEN 694
                     ++  T  G     ++ D +   R+GK  M L+  D     L +     ++
Sbjct: 619 ----GARTTALLLWTAQGFGFVTRIGDALSRQRAGKTFMTLEDGDVPQRPLVLGIDVGDS 674

Query: 695 ---DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
               + L +  G+ + +  + ++      S G RG++L + D   ++  + H   + +  
Sbjct: 675 PTGRLALLSTGGRLLIYAAAEVKAL----SRGGRGVTLMEQDAKEALLSIAHLVGEREAL 730

Query: 752 ICYMKHMSAQRRLIS 766
           +   K      R  S
Sbjct: 731 LVSGKGRGGTERSTS 745



 Score = 40.9 bits (94), Expect = 0.91,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           DE ++V    +     L T+ G  +                    ++   GD + +    
Sbjct: 528 DEAVTVIVSQKG---WLRTQKGHGLVLS----------------ALTFKPGDALYA--TF 566

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                D    +       +                         ++        +   +L
Sbjct: 567 ECRSVDPLVVLGSDGRAYSIDVADLPGGRGDGQPVTSFIELAPGTQALHYLAGARTTALL 626

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN-EIGALVAVFPVNDN--DQIILVSD 858
             + +GFG  T   D     R+GK      +   +     LV    V D+   ++ L+S 
Sbjct: 627 LWTAQGFGFVTRIGDALSRQRAGK--TFMTLEDGDVPQRPLVLGIDVGDSPTGRLALLST 684

Query: 859 KGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
            G L+     E++  SR  +GV +      E ++S+  + 
Sbjct: 685 GGRLLIYAAAEVKALSRGGRGVTLMEQDAKEALLSIAHLV 724


>gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
 gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015]
          Length = 750

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/722 (32%), Positives = 364/722 (50%), Gaps = 63/722 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I +  I D  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++G+  + K+ K
Sbjct: 6   NDIETQPIKDFTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ ++ R  L++GQGN+GS D DP   AA RYT
Sbjct: 66  AARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPD-DPKSFAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L+  +  +L +LG+ TVD++PN+DG+  EPVVL AR PNVL+NG  GIAVGMAT+IP
Sbjct: 125 EAKLRPYSRLMLHELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HNL EV   C+A++DN  + ++ LM  I  PD+PT   V+  ++ I+  Y TG GSI +
Sbjct: 185 PHNLREVASACIALLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRM 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R    +E+       +V+T +P+Q   A ++E+IA+ +R+K++  + DLRDESD +   R
Sbjct: 245 RAKYTVEEGD-----VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIR 299

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
            VI  +    + D +++ L+  T L+  + VNM  +    +P    L  IL  ++ FR +
Sbjct: 300 FVISPRSNRVNIDELMSHLFATTDLERNYRVNMNVIGLDGRPRVRNLREILVEWLKFRIQ 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL +A  NLDEV+RIIR    P+                
Sbjct: 360 TVTRRLQWRLDKVEKRLHILEGLLVAYLNLDEVIRIIRTEDEPKA--------------- 404

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  AILE +L  L  L    IR E   L  E  + 
Sbjct: 405 --------------VLMKAFKLSDEQAEAILETKLRHLAKLEEMKIRGEQEDLERERDDL 450

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHL 545
              L S+ RL  +IK+EL +   +    RR+ +VE      M++   +  E   + +S  
Sbjct: 451 QKTLGSKQRLKTLIKKELKADAQDYGDDRRSPLVEREAAQQMDETALVPSEPTTIVISEK 510

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +        +  +  D      +  T+   +F  S G  Y      
Sbjct: 511 GWV--------RAGKGHDLKPEELNYKAGDGYQHHALGRTNQQAVFIDSNGRTYTLVAHS 562

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            P    ++ G+ L   L +  G                 +LY++  T  G     KL D 
Sbjct: 563 FPSA--RSFGEPLTGKLKVKDGAEF-----VGVMAGKPQDLYLLA-TDAGYGYVAKLEDM 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK  + +    ++L        +++ ++  T+ G C    +  +         G
Sbjct: 615 MTRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQGYCGVIKLDELPQLP--KGKG 672

Query: 724 VR 725
           V+
Sbjct: 673 VK 674


>gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619]
 gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619]
          Length = 752

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 247/809 (30%), Positives = 395/809 (48%), Gaps = 69/809 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ QEP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   L+ L E I+GPD+PT   +I  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     AD ++  L+  T L+S + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDGRPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR ++ L K   R H+L GL  A  NLDEV+ IIR   +P+ A 
Sbjct: 351 RALLLEWLQYRIGTVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E+Q   ILE RL +L  L    IR
Sbjct: 410 ----------------------------LIARFDLTEIQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  + L +L S ++L  +++ EL+   +     RR+ IV         + + 
Sbjct: 442 GEQDELLKEQAKLLALLGSDAKLRKLVRSELIKDAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +  
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGRLTPPPGATFECVLL------PDDDALYVVAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++S       +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQDWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + +         G + I +  GD+V S    V       +     ++       L   D 
Sbjct: 666 ADLPQLG--KGKGNKIIGV-PGDRVASREEYVTDLAVIPEGATLVLQAGKRTLSLKPDDL 722

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798
           E     +     +     +R   L+++  
Sbjct: 723 EHYKGERGRRGSKLPRGFQRVDGLQVEGP 751



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 16/182 (8%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD   + A                 +  A   L S   +        +   G  
Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGAT 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E  C  L   +   +  S+ G+G      D +  N++GKG+ +           +++  
Sbjct: 589 FE--CVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSL-----PNGAKVISPR 641

Query: 846 PV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ERVVSVERI 897
           PV   + D +  V+ +G L+   V ++    +  KG  I     D      E V  +  I
Sbjct: 642 PVANREQDWLAAVTTEGRLLVFKVADLPQLGK-GKGNKIIGVPGDRVASREEYVTDLAVI 700

Query: 898 RE 899
            E
Sbjct: 701 PE 702


>gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens]
 gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens]
          Length = 751

 Score =  544 bits (1401), Expect = e-152,   Method: Composition-based stats.
 Identities = 242/757 (31%), Positives = 373/757 (49%), Gaps = 69/757 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +       +      +T+  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MKKIPNMNEVTEKKPLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP 
Sbjct: 61  KATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL   A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYA 242
           VGMA++I  HNL EV + C+ ++DNP  D+  + E I+GPDFPT A I+  +  I+  Y 
Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G GSI +R +   EK     + IV+T +PYQV+ A ++E+IA  +++K++  + DLRDE
Sbjct: 240 SGNGSIKMRAIYTQEK-----QNIVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294

Query: 303 SDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD     R+VI  +      + +++ L+  T L+  + VN   +    KP    L+ IL 
Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L K  +R H+L GL IA  N+DEV+ IIR    P+        
Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQ------- 407

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                 G      L+E Q  AILE++L  L  L    +R EL+ 
Sbjct: 408 ----------------------GLISRFNLTERQAEAILEMKLRHLAKLEEIKLRGELDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E       L+S   L  ++K+E+   +DE   PRR+ I+        ++ED +  E 
Sbjct: 446 LSDERDTLQKTLASHFLLKELVKEEITKDRDEFGDPRRSPIITREDSQALKEEDILPNEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  T+  VLFF   G 
Sbjct: 506 ITVVLSKNGWV--------RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGK 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY      LP    Q           L         + F           V+ AT  G  
Sbjct: 558 VYSLPGHVLPSARGQGE--------PLTGKLNPAEGVLFEAIVGGEPEQKVLLATDSGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRV 715
              K+ D    NR+GK  +KL  +  IL            +   T +G+ + F +  +  
Sbjct: 610 FIAKIEDLYVKNRNGKACIKLSEKSHILPPRLIPNREQLFVACATNVGRLLIFSLEELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +     G + IS+      ++ + ++ + ++   D+
Sbjct: 670 LS--RGKGNKLISIPAAKAVSREEYIVDIQVLTTNDS 704



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 20/195 (10%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+  +  +                +      L S   +    
Sbjct: 517 RAAKGHDVDGKELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + E         EQ +L  ++ G+G      D  + NR+GK      +S+
Sbjct: 577 TGKLNPAEGVLFEAIVG--GEPEQKVLLATDSGYGFIAKIEDLYVKNRNGK--ACIKLSE 632

Query: 835 INEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------TA 886
            +    ++    + + +Q+ +   ++ G L+   + E+   SR  KG  + S       +
Sbjct: 633 KS---HILPPRLIPNREQLFVACATNVGRLLIFSLEELPELSR-GKGNKLISIPAAKAVS 688

Query: 887 KDERVVSVERIRESE 901
           ++E +V ++ +  ++
Sbjct: 689 REEYIVDIQVLTTND 703


>gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
 gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400]
          Length = 774

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 252/813 (30%), Positives = 383/813 (47%), Gaps = 72/813 (8%)

Query: 1   MTEHIISS--DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M +        E        +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF
Sbjct: 1   MDDDNTLDLFTEPPPPEGDFLTLGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRRILF 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFG
Sbjct: 61  AMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFG 120

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S DGD  AA RYTE RL   A  LLD++ + TVDF  NYDG F EP +L AR P VL+NG
Sbjct: 121 SRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVLLNG 180

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GI 237
             GIAVG+AT IP+HNL EV    VA+I NP +    LM+ I GPDFP G  I+     I
Sbjct: 181 ASGIAVGLATEIPSHNLREVAAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSEAEI 240

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
             AY +GRGS+ +R    IE+ +  + Q+V+TE+P       +LE+I E    K  +   
Sbjct: 241 SAAYESGRGSLKVRARWKIEELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKLGKK 300

Query: 298 DLRDE-------------------SDRQGYRVVIELKRGASADV-ILNQLYRYTSLQSLF 337
            L  E                         R+V E K         +N L  +TSL+S  
Sbjct: 301 TLTPEQLQTKQTMLALLDAVRDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLESNA 360

Query: 338 SVN-MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN 396
           S+N ++     +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I   N
Sbjct: 361 SLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIVFLN 420

Query: 397 LDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA 456
           +DEV+RIIR S  P+ A                                   LS+ Q   
Sbjct: 421 IDEVIRIIRESDEPKVA-----------------------------LMAAFGLSDRQAED 451

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           ILE+RL +L  L +  I  EL  L  E     ++L S S +  ++ +E+     +    R
Sbjct: 452 ILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGSESAMKRLLIKEIEGDAKQYGDER 511

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +++       E  +V E + V VS  G+V        RA +  G   +G   +  D 
Sbjct: 512 RT-LIQQEKRATFEARVVDEPVTVVVSQKGWV--------RALKGHGLDAAGFTFKAGDG 562

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
           +   F   T  +++ + S G VY   V  LP G     G  + +++ L  G         
Sbjct: 563 LYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGD--GVPVTSLIELESGSH------L 614

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-ND 695
               ++  +  ++ A+ +G     ++ D +   ++GK  M +D+  + L+      +   
Sbjct: 615 MHYYAASADQALLLASSNGFGFIARVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDATH 674

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           I   +  G+ + F +  ++  +G    GV  ++L + + ++    + +A           
Sbjct: 675 IACLSSNGRLLVFGLDEMKTLSG-GGRGVTLMALDEKETLVQALSINNAGVVLIGTRRGG 733

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           +    +    +         +   + E  +  E
Sbjct: 734 RVDEEKVSGAALAPHIGKRARKGRAPESKMKLE 766



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +  A   L  G  + +          G+ 
Sbjct: 554 GFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSH 613

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 614 LMHYYA--ASADQALLLASSNGFGFIARVGDMVSRVKAGKSFMTIDAGAQ----PLAPMP 667

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + D   I  +S  G L+   ++E++  S   +GV + +  + E +V
Sbjct: 668 MLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMALDEKETLV 714


>gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 753

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 373/740 (50%), Gaps = 58/740 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++I +S+   E+ + +VS+   ++  YL YA++ I  RAIPDLRDG KPVHRRI+  M +
Sbjct: 4   DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+++   + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++DG
Sbjct: 64  MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ + A  +L  + +D VDFR  Y+    EPVV  +++PN+L NG  GI
Sbjct: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAY 241
           AVGMAT+IP+HN+ E+ +  +A+IDNP+I ++ L+E I GPDFPTG +I   R  I  +Y
Sbjct: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             GRG   +R    +E+       IVVTEIPYQV K+ ++EKIAEL+  KRI  + D+RD
Sbjct: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG-ILKA 360
           ES      V+    R    D+++  ++  + +++ F +NM  L+  +  +   +  ILK 
Sbjct: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++A R EV+ RR+ + +     R  +L GL IA  N+DE++ IIR    P+         
Sbjct: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------- 414

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E Q  AIL LRL  L  L    I++EL++L
Sbjct: 415 --------------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---DEDC 532
             E ++   +L+S  +    I  E+  VK+          RRT   E     +    +  
Sbjct: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I +E + V +S+ G++        R+ +      S +  ++ D +       T   +L  
Sbjct: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+ G  Y      L  G        L+  L+ NQ                 +   ++  +
Sbjct: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD--------IVTAFVYDSTCKLLVVS 618

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             GN    + S+ I   R GK  +K+ S +++  V   T  + + +  +  + + F I  
Sbjct: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQ 677

Query: 713 IRVFAGRNSVGVRGISLAKG 732
           I   +     GVR  S   G
Sbjct: 678 IPEMS--RGKGVRLQSYKDG 695



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 11/161 (6%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
             +GD   S+ I LHA       +      +      +  +           ++ N +++
Sbjct: 545 FKEGD---SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601

Query: 789 RCQEL-KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                       +L VS KG        +   + R  KG     VS   ++  +V V   
Sbjct: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVT-- 657

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              D + +V +   L+   +++I   SR  KGV + S    
Sbjct: 658 --GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695


>gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 755

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/759 (31%), Positives = 373/759 (49%), Gaps = 73/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNTAKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EVV+  V ++D P   LD LME ++GPD+PT   +I     I
Sbjct: 173 TTGIAVGMATDIPPHNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  +     +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYKNGRGSVRMRAVWSKEDGN-----VVITALPHQVSGAKVLEQIANQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR E V +R  + L K   R HVL GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE QT AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFGLSETQTEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   ILSS  +L  ++K+E+++        RR+ + E      M + D 
Sbjct: 439 GEQSELAKERDKLQAILSSERKLNTLLKKEIMADAATYGDERRSPMRERDEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 TPSEPVTIVLSEMGWV--------RSAKGHDIDPAGLNYKAGDSFRGAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    Q           L     +           + +    +  +
Sbjct: 551 DTTGRSYSLDPRDLPSARGQGE--------PLTGKLTVPAGATVEHVLMAPDEQQFLMVS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G       SD +  NR+GK  + L     +++        ++ +L  T+ G+ + FP+
Sbjct: 603 DAGYGFICTFSDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLAITRAGRMLMFPV 662

Query: 711 SAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHADA 746
           + +   +     G + IS+   A+ D +  + I+    +
Sbjct: 663 ADLPQLS--KGKGNKIISVQSAAENDLLSWLLILPPQSS 699



 Score = 55.2 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 27/241 (11%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV--- 724
           +   +A      DE        + ++    ++       P++ +    G  R++ G    
Sbjct: 466 KKEIMADAATYGDERR--SPMRERDEAKAMSEHDITPSEPVTIVLSEMGWVRSAKGHDID 523

Query: 725 -RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             G++   GD     A                 +    R L S   +        +   G
Sbjct: 524 PAGLNYKAGDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTVPAG 583

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E     +   EQ  L VS+ G+G   +  D    NR+GK +     +       ++ 
Sbjct: 584 ATVE--HVLMAPDEQQFLMVSDAGYGFICTFSDLVAKNRAGKALITLPENAR-----VMT 636

Query: 844 VFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
              +N+  +D ++ ++  G ++  PV ++   S+           K  +++SV+   E++
Sbjct: 637 PLEINNPQDDMLLAITRAGRMLMFPVADLPQLSK----------GKGNKIISVQSAAEND 686

Query: 902 I 902
           +
Sbjct: 687 L 687


>gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
 gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43]
 gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017]
 gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1]
          Length = 752

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
 gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01]
          Length = 761

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/745 (32%), Positives = 397/745 (53%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  K      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMSEEEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K +D +  NRSGK  + L +  EI++ +       ++IL  T  G+ + FPI  +   A
Sbjct: 611 CKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      + ++V+S
Sbjct: 671 --KGKGNKIINIPAAKAKEREEVLS 693



 Score = 44.4 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      D    NRSGK   A      N    ++   
Sbjct: 585 SSIRQVIMSEEEQLWLVGSDAGYGFVCKGADLLSKNRSGK---ALVTLPANS--EIMTPK 639

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
            + D  +D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 640 EIEDLDSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 693


>gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
 gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1]
          Length = 752

 Score =  544 bits (1400), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/722 (32%), Positives = 365/722 (50%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              Q           L     +             ++  ++ A+  G       +D +  
Sbjct: 563 ARGQGE--------PLTGKLTLLPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLLPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010]
 gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010]
          Length = 746

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/726 (33%), Positives = 371/726 (51%), Gaps = 63/726 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             +    + D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 6   DDLEQQPLRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALSKHKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+GS+D DP   AA RYT
Sbjct: 66  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMD-DPKSFAAMRYT 124

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL +LG+ T D+ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 125 EARLAPYAQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMATDIP 184

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
            HNL EVV   + ++ +P + LD L+E I+GPDFPTGA I+  +  I+  Y TG GS+  
Sbjct: 185 PHNLREVVSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGSVKQ 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R   + E        I++  +PYQV+ A +LE+IA  +  K++  +ADLRDESD     R
Sbjct: 245 RASYNKEDGE-----IIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEHPVR 299

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREE 367
           +VI  +      D +++ L+  T L+    VNM  +    +P+   L  +L  ++ +R E
Sbjct: 300 LVIVPRSNRVDIDSLMSHLFATTDLERSHRVNMNMIGMDGRPQVKNLRDMLIEWLGYRVE 359

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K  DR HVL GL IA  N+DEV+ IIR   +P   +  +M+R       
Sbjct: 360 TVRRRLQYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDP---KAVMMER------- 409

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +++ Q  +ILELRL  L  L    IR E++ L  E K+ 
Sbjct: 410 -------------------FSITDRQAESILELRLRHLAKLEEMKIRGEMDELSKERKQL 450

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
             +LSS +RL  +I++EL +  ++    RR++IVE       +  + +  E + + +S  
Sbjct: 451 ELLLSSDTRLKTLIRKELTADAEKFGDDRRSQIVERKASKALDATELLPTEPLTIVLSES 510

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        +A +      + +  R  D         ++  ++F    G  Y      
Sbjct: 511 GWV--------KAAKGHDVDPTSLNFRTGDRYLTSVKARSNQQIVFLDETGRSYSLSAHT 562

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    + +G+ L   L      R  +++          +  ++     G      L + 
Sbjct: 563 LPSA--RGQGEPLSGRLQSAPEVRFVSVLAVEA------DKTILLTNTAGYGFVTTLENL 614

Query: 666 IQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK    L    +IL          + + + +  G+ + F  S I         G
Sbjct: 615 LAKNKAGKALFNLPKGAQILPPLLLEDQDNDQMAVASGDGRLLVFAASEIPTLN--KGKG 672

Query: 724 VRGISL 729
           VR I++
Sbjct: 673 VRLINI 678


>gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
 gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315]
          Length = 773

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/809 (31%), Positives = 385/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                                   LSE Q   I
Sbjct: 421 DEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH------LM 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+          +
Sbjct: 615 HYYAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLIGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                              +   + E  +
Sbjct: 734 AQDDTLSYAGLAPHIGKRARKGRTPETKL 762



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--APADQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 713


>gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
 gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380]
          Length = 757

 Score =  543 bits (1399), Expect = e-152,   Method: Composition-based stats.
 Identities = 239/758 (31%), Positives = 374/758 (49%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP  L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYADVLLGELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFAISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  ++K+E+ +        RR+ + E      M D D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLLKKEIQADAAAYGDDRRSPLKERAEAKAMSDHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPTGLNYKAGDSFRAAARGMSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   +  +  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAPEHQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D I  NR+GK  + L    + L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLIAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D+++ + ++  
Sbjct: 663 DLPELS--KGKGNKIVSIPAPDAAAGKDRLVWLFVLPP 698



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   + A  +              +      L S   +    
Sbjct: 515 RSAKGHDIDPTGLNYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +  + Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 575 TGKLTPPPGATIEQVL--MAPEHQKLLMASDAGYGFVCTFNDLIAKNRAGK---TMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
            N   AL  +     +D ++ ++  G ++  PV ++   S+  KG  I S       A  
Sbjct: 630 ENAK-ALPPLEIYGPDDMLLSITAAGRMLMFPVADLPELSK-GKGNKIVSIPAPDAAAGK 687

Query: 889 ERVVSVERIRES 900
           +R+V +  +   
Sbjct: 688 DRLVWLFVLPPQ 699


>gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
 gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp]
          Length = 749

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 238/747 (31%), Positives = 385/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPDFPT   VI  +  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGS+ +R V  +E        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYESGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     AD ++  L+  T L+S + VN   +    KP+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR ++ L+K   R H+L GL IA  NLDEV+RIIR    P+   
Sbjct: 351 RTLLSEWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+EVQ   IL+ RL +L  L    IR
Sbjct: 408 --------------------------PVLMEAFGLTEVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++ L +L S ++L  ++++E++   ++    RR+ IV         + + 
Sbjct: 442 GEQDELAKEREKLLALLGSEAKLKKLVRKEIIEDAEKYGDDRRSPIVARAEARALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     +M         ++   V A+
Sbjct: 554 DSTGRSYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVML------PEDSALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++++ +  T  +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLEDDWLAAVTTEGRLLLFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           + +         G + I +  G++V S
Sbjct: 666 TDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 56/171 (32%), Gaps = 13/171 (7%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD            ++           S      S  +           +    
Sbjct: 529 GLSYKAGD---GFKAAAPGRSNQYAVFIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPP 585

Query: 786 SEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  +  ++  +  + S+ G+G      D +  N++GK + +           +VA 
Sbjct: 586 GATFECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLSL-----PNGAKVVAP 640

Query: 845 FPVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            PV   ++D +  V+ +G L+   V ++    +  KG  I      ERV S
Sbjct: 641 KPVTNLEDDWLAAVTTEGRLLLFKVTDLPQLGK-GKGNKIIGI-PGERVAS 689


>gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
 gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297]
          Length = 747

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 251/753 (33%), Positives = 395/753 (52%), Gaps = 69/753 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +++    ++S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 2   TDQQNYSETISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLRNTA 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA
Sbjct: 62  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAA 120

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K AH LL++LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMA
Sbjct: 121 MRYTESRLHKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMA 180

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T+IP HNL E+   CV +ID PD  +  LM  +RGPDFPTGA ++     I+  Y  GRG
Sbjct: 181 TDIPPHNLKELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYEGGRG 240

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           ++ +R     E        IV+TE+P+QV+ + +LE+IA+ ++ K++  +ADLRDESD +
Sbjct: 241 TLRLRSKYIQE-----GTDIVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDESDHE 295

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+VIE +      D ++N L+  T L+    VN+  +    KP+   L  IL  ++ 
Sbjct: 296 NPTRLVIEPRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDGKPQVKPLNHILSEWLE 355

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR E V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R   
Sbjct: 356 FRTETVRRRLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKP---KEELMAR--- 409

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+VQ  AILE++L +L  L    IR E + L  E
Sbjct: 410 -----------------------FGLSDVQAEAILEIKLRQLAKLEEIKIRGEQDELSKE 446

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             +   IL S++R+  +IK+E+L+  +     RRT +V         + + +  E + V 
Sbjct: 447 RDQLEKILGSKARMRTLIKKEILADAETYGDDRRTLLVSRAEASAFSETEILPSEAVTVV 506

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++        R+ +       G+  +  D         ++ + +   S G  Y  
Sbjct: 507 LSERGWI--------RSGKGHELEPEGLNYKSGDSFAFAARGKSNQATVLLDSTGRSYSL 558

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP    + +G+ +   L+   G  +  ++       + ++ Y+   +  G     K
Sbjct: 559 QTHTLPSA--RGQGEPITTRLNPPPGAAMKGLLL-----GNPDDQYL-LTSDAGYGFIGK 610

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGR 719
           LSD +  N++GK  + L    E++  +   Q   + +   +  G+ + FP+  +   A  
Sbjct: 611 LSDMVSKNKAGKALLSLPKGAEVMPPQPVKQLSTDYLAAISNEGRLLVFPVRDLPELA-- 668

Query: 720 NSVGVRGISL------AKGDQVISMAIVLHADA 746
              G + I++      A+ + ++   ++   D 
Sbjct: 669 KGKGNKIINIPSSRAAAREELMVGAVVLGADDT 701


>gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
 gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01]
          Length = 749

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 386/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E + GPDFPT   VI  +  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKLYETGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     AD ++  L+  T L+S + VN   +    KP+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR ++ L+K   R H+L GL IA  NLDEV+RIIR   +P+   
Sbjct: 351 RTLLSEWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                          T  L++VQ   IL+ RL +L  L    IR
Sbjct: 408 --------------------------PVLMETFGLTDVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++ L +LSS ++L  ++++E+L   ++    RR+ IV         + + 
Sbjct: 442 GEQDELAKEREKLLALLSSEAKLKKLVRKEILEDAEKYGDDRRSPIVARAEAKALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     +M         ++   V A+
Sbjct: 554 DSTGRSYSLTAHSLPSA--RGQGEPLTGRLTPPPGATFECVML------PEDSALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++++ +     +++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLEDDWLAAVTTEGRLLLFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           + +         G + I +  G++V S
Sbjct: 666 TDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 13/171 (7%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD            ++           S      S  +           +    
Sbjct: 529 GLSYKAGD---GFKAAAPGRSNQYAVFIDSTGRSYSLTAHSLPSARGQGEPLTGRLTPPP 585

Query: 786 SEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  +  ++  +  + S+ G+G      D +  N++GK +             +VA 
Sbjct: 586 GATFECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLTL-----PNGAKVVAP 640

Query: 845 FPVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            PVN  ++D +  V+ +G L+   V ++    +  KG  I      ERV S
Sbjct: 641 KPVNNLEDDWLAAVTTEGRLLLFKVTDLPQLGK-GKGNKIIGI-PGERVAS 689


>gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
 gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168]
          Length = 752

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 239/769 (31%), Positives = 391/769 (50%), Gaps = 62/769 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L+EI++GPDFPT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+V+
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVV 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGITETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLNYKAGDSYKSDVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         +   ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEADERKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V    + + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIDDESDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           ++   + +     + H      +    +     + +L   + +++T  +
Sbjct: 673 NIPSAEALKGEDGLAHLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 11/177 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G++   GD   S   V          I       A   +          
Sbjct: 511 RSAKGHDIDAQGLNYKAGDSYKS--DVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  E+ +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEADERKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                 ++     +++D ++ ++  G ++  PV+++   S+  KG  I +    E +
Sbjct: 629 HVMPPVVID----DESDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAL 680


>gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
 gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627]
          Length = 752

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 374/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPIRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+                   
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPK------------------- 400

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++E Q  AILEL+L  L  L    IR E N L  E  +   I
Sbjct: 401 ----------PKLMSRFGITETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQSI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5]
 gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5]
          Length = 752

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 373/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDERRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 75/236 (31%), Gaps = 17/236 (7%)

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG-- 718
                  + +    A      DE  S     +E      ++       P++ +    G  
Sbjct: 453 SERKMNNLLKKELQADAQAYGDERRSPLQEREEA--KAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 752

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I+ R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
 gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158]
          Length = 773

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 250/812 (30%), Positives = 385/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M +        SD  E   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDITPDLFAGSDAPEADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LYAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDA 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY +GRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYESGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLAILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+D+V+RIIR S  P+ A                                T  L++ Q 
Sbjct: 418 LNIDDVIRIIRESDEPKAA-----------------------------LISTFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANDSAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +    +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQRGWV--------RALKGHGLDPAAFSFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D     L+        
Sbjct: 613 -LMHYYAAAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVTLMALDDKETLVQALAIEPAGVVLVGSGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + +  +
Sbjct: 731 GGKVQEETLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 53/167 (31%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             S   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 AFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--AAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVTLMALDDKETLV 713


>gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 752

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180]
 gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180]
          Length = 748

 Score =  543 bits (1398), Expect = e-152,   Method: Composition-based stats.
 Identities = 232/760 (30%), Positives = 364/760 (47%), Gaps = 73/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  I +     +G+    + D  + +YL Y++ VIL RA+P + DGLKPV RRIL+ M
Sbjct: 1   MPDTAIYT----AEGLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS 
Sbjct: 57  SELGLSATAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +  + T+D++PN+DG+  EP +L AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV   C+ ++++PD  L+ L+ II  PDFPT   ++     I
Sbjct: 176 ATGIAVGMATDIPAHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TG GS+  R     E+       IV+T +PYQV+ + +LE+IA     K++  I 
Sbjct: 236 LKLYRTGNGSLRQRARYTREQGD-----IVITALPYQVSGSRVLEQIAAQFNAKKLPMIE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D RDESD +   R+VI  +      + +++ L+  T L+  + VN+  +    +P    L
Sbjct: 291 DFRDESDHEYPTRLVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNGRPRVMDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ +R E V RR ++ L K  +R H+L GL IA  NLDEV+RI+R    P    
Sbjct: 351 REILSEWLIYRTETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEP---- 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E Q   +L  RL +L  L    IR
Sbjct: 407 -------------------------RPVLMERFGLTEPQADYVLNTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E   L  E      +L     L G+++ E+ +  +     RR+ +VE      +++ + 
Sbjct: 442 AEQAELAAERDGLQRLLGDERALKGLVRDEIAADAERYGDARRSPLVERAAAAAIDETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        RA +      + +  R  D    L  + ++ + +F 
Sbjct: 502 TPSEPLTVVLSEKGWV--------RAAKGHEVDATTLSYRAGDAFLSLARLRSNQTAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y       P    + +G+ L   L    G R            +    Y++  +
Sbjct: 554 DSTGRSYALPAHTFPSA--RGQGEPLTGRLDPPPGARF-----VTVLGDNAETRYLLA-S 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     +  + I   + GK  + L     +L          + +   T  G  + FP+
Sbjct: 606 DAGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEGSSVAAVTTAGHLLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHA 744
           + +   A     G + I +      A+G+++I++A+V   
Sbjct: 666 AELPEMA--RGKGNKIIGIPAGRAGAEGERLIAVAVVGEG 703



 Score = 44.4 bits (103), Expect = 0.087,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 18/192 (9%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GD  +S+A +               +        S   +    
Sbjct: 518 RAAKGHEVDATTLSYRAGDAFLSLARLRSNQTAVFLDSTGRSYALPAHTFPSARGQGEPL 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G        +    E   L  S+ G+G      +     + GK +       
Sbjct: 578 TGRLDPPPGARFVTVLGD--NAETRYLLASDAGYGFIVRFDELIAKPKGGKAVLTLPDGA 635

Query: 835 I-NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
              +   +  +    +   +  V+  G L+  P+ E+   +R  KG  I         A+
Sbjct: 636 RLLDPVRIAGI----EGSSVAAVTTAGHLLLFPLAELPEMAR-GKGNKIIGIPAGRAGAE 690

Query: 888 DERVVSVERIRE 899
            ER+++V  + E
Sbjct: 691 GERLIAVAVVGE 702


>gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
 gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7]
          Length = 752

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 373/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E +    E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSEREKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
 gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB]
          Length = 805

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 233/735 (31%), Positives = 353/735 (48%), Gaps = 76/735 (10%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
             YL YA++V+ GRA+P   DG KPV RRIL+ M +MG+  + ++VK AR+ G+V+GKYH
Sbjct: 76  RRYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVGDVIGKYH 135

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++++YDA+ RMAQDWSLR  +++GQGNFGS DGD  AA RYTE RL   A  LL +L
Sbjct: 136 PHGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIAELLLAEL 195

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            + TVD++PNYDG+  EP +L AR P  L+NG  GIAVGMAT IP HNL EV +  V +I
Sbjct: 196 DEGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVANAAVNLI 255

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
            NPD   D ++++I GPD+P GA I+     I   Y +GRGS+ +R    IE  +  + +
Sbjct: 256 RNPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIENLARGQWK 315

Query: 266 IVVTEIPYQVNKAAMLEKIAE----LVREKRIVDI------------------ADLRDES 303
           +V+TE+P  V+ A ++ +I      + +EK    +                  + +RDES
Sbjct: 316 LVITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISESGVRDES 375

Query: 304 DR-QGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKA 360
            +    R+VIE        D ++  L  +TSL++  S+N+  L     P + +L  ++  
Sbjct: 376 GKEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNGTPRQASLYSMIAE 435

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +  FR   V RRT++ L  A  R H+L G    + ++D V+++IR S +P+         
Sbjct: 436 WCRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKA-------- 487

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       LSE+Q   ILE+RL +L  L    I  EL  L
Sbjct: 488 ---------------------DLMAHFKLSEIQAEDILEIRLRQLARLEGIKIGEELAKL 526

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV---RED 537
             E      +L S   L   +  E+ +   +    RRT I         +   V    E 
Sbjct: 527 REEAAGLNKLLDSEEALRACVAAEIEADAKKYGDDRRTLIEADAKVTMSDAKTVSIVDEP 586

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             + VS  G++        R++       + +  R  D +       T  S++    LG 
Sbjct: 587 TTLIVSKHGWL--------RSRTGHNIDPTQLTFRSGDSLLACLPCRTVDSLIILDHLGR 638

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      +P G     G    +++    G ++   +         +  Y+V A   G  
Sbjct: 639 AYSISAADIPGGKGD--GVPATSVVDFQDGGKLCLALSTSA-----DKRYLVAA-DGGYG 690

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            R + SDF+   ++GK  + L   +          E +I   TK G+ + F I  +R+ A
Sbjct: 691 FRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAEGEIACVTKDGRALVFNIEEVRLLA 750

Query: 718 GRNSVGVRGISLAKG 732
                G++ I  A G
Sbjct: 751 --KGRGLKLIDAAPG 763


>gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
 gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1]
          Length = 774

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 254/816 (31%), Positives = 382/816 (46%), Gaps = 78/816 (9%)

Query: 1   MTEHII-----SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M +        +    E   +T   + +  + +YL YA++V+ GRA+PD+ DG KPV RR
Sbjct: 1   MDDDNTLDLFTAPPPPEGDFLT---LGNYAERAYLDYAVSVVKGRALPDVCDGQKPVQRR 57

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ILF M  MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQG
Sbjct: 58  ILFAMNDMGLSDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQG 117

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS DGD  AA RYTE RL   A  LLD++ + TVDF  NYDG F EP +L AR P VL
Sbjct: 118 NFGSRDGDGAAAMRYTEARLTPIAKLLLDEINQGTVDFMKNYDGEFDEPRLLPARLPFVL 177

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           +NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM+ I GPDFP G  I+   
Sbjct: 178 LNGASGIAVGLATEIPSHNLREVAAAAVAMIRNPKLQHAELMQYIPGPDFPGGGQIISSE 237

Query: 236 -GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I  AY +GRGS+ +R    IE+ +  + Q+V+TE+P       +LE+I E    K  +
Sbjct: 238 AEISAAYESGRGSLKVRARWKIEELARGQWQLVITELPPSTAAQKVLEEIEEQTNPKIKL 297

Query: 295 DIADLRDE-------------------SDRQGYRVVIELKRGASADV-ILNQLYRYTSLQ 334
               L  E                         R+V E K         +N L  +TSL+
Sbjct: 298 GKKTLTPEQLQTKQTMLALLDAVRDESGKDAPVRLVFEPKSSRIDQTDFVNTLLAHTSLE 357

Query: 335 SLFSVN-MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S  S+N ++     +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I 
Sbjct: 358 SNASLNLVMVGGDGRPRQKGLSEILHEWIAFRFATVTRRTRHRLSKVDDRIHILEGRMIV 417

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             N+DEV+RIIR S  P+ A                                   LS+ Q
Sbjct: 418 FLNIDEVIRIIRESDEPKVA-----------------------------LMAAFGLSDRQ 448

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              ILE+RL +L  L +  I  EL  L  E     ++L S S +  ++ +E+     +  
Sbjct: 449 AEDILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGSESAMKRLLIKEIEGDAKQYG 508

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
             RRT +++       E  +V E + V VS  G+V        RA +  G   +G   + 
Sbjct: 509 DERRT-LIQQEKRATFEARVVDEPVTVVVSQKGWV--------RALKGHGLDAAGFTFKA 559

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +   F   T  +++ + S G VY   V  LP G     G  + +++ L  G      
Sbjct: 560 GDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGD--GVPVTSLIELESGSH---- 613

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
                  ++  +  ++ A+ +G     K+ D +   ++GK  M +D+  + L+      +
Sbjct: 614 --LMHYYAASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPD 671

Query: 694 -NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
              I   +  G+ + F +  ++  +G    GV  ++L   + ++    + +A        
Sbjct: 672 ATHIACLSSNGRLLVFGLDEMKTLSG-GGRGVTLMALDDEETLVQALSINNAGVVLIGTR 730

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              +    +              +   + E  +  E
Sbjct: 731 RGGRVDEEKVSGAVLAPHIGKRARKGRAPESKMKLE 766



 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +  A   L  G  + +          G+ 
Sbjct: 554 GFTFKAGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSH 613

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 614 LMHYYA--ASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAQ----PLAPMP 667

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + D   I  +S  G L+   ++E++  S   +GV + +   +E +V
Sbjct: 668 MLPDATHIACLSSNGRLLVFGLDEMKTLSGGGRGVTLMALDDEETLV 714


>gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 750

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/745 (32%), Positives = 380/745 (51%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV    + +IDNP  +L  +ME ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E        I++T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWKKEGPE-----IIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D ++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILAEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + +R   V RR +Y L+K   R HVL GL +A  NLDEV+ IIR    P   + ELM R 
Sbjct: 356 IEYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIRNEDEP---KAELMSR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L+E+Q  AIL+ +L  L  L    IR E   L 
Sbjct: 412 -------------------------FGLTEIQADAILDTKLRHLAKLEEMKIRGEQEELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E K+   +L S  RL  ++K+E+ +  ++    RR+ ++E        + D +  E + 
Sbjct: 447 KERKKLETLLGSERRLNTLLKKEIEADAEKYGDDRRSPLIEREEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +      + +  +  D         +   V+   S G  Y
Sbjct: 507 VVLSDKGWV--------RHAKGHELDPATLNYKSGDKYLAHARGKSSQPVVLLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L+++ G                     +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNISSGS------NIRHLVMGEEEQLWLVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  ++SGK  + L    E+L          ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSDEILAVTNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++        D+ +S
Sbjct: 671 --KGKGNKIINIPAAKAKSRDEFVS 693



 Score = 44.4 bits (103), Expect = 0.096,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 12/103 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT----DVSKINEIGAL 841
           S  R   +  +EQ  L  S+ G+G      D    ++SGK +       +V     IG L
Sbjct: 585 SNIRHLVMGEEEQLWLVGSDAGYGFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHL 644

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                  D+D+I+ V+++G ++  P+ ++    +  KG  I +
Sbjct: 645 -------DSDEILAVTNQGRMLLFPIKDLPQLGK-GKGNKIIN 679


>gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
 gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1]
          Length = 790

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 253/751 (33%), Positives = 376/751 (50%), Gaps = 70/751 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V I +  + +YL YA++V+ GRA+P++ DG KPV RRIL+ M QMG+    K+VK AR+
Sbjct: 42  EVKIAEYAERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKSARV 101

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+++ Y+A+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL  
Sbjct: 102 VGDVLGKYHPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEARLTP 161

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL +L   TVDF PNYDG+FQEP +L AR P VL+NG  GIAVGMAT IP+HNL E
Sbjct: 162 IADLLLSELDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLKE 221

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V    VA+  NP++  D L+  I GPDFP G  I+     I++AYA+GRGS+ +R    I
Sbjct: 222 VAKAAVALAKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRARWSI 281

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR---------------- 300
           E+ +  + Q+VV+E P+ V+   +LE+I EL   K   +   L                 
Sbjct: 282 EQLARGQWQVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSVLDA 341

Query: 301 --DESDR-QGYRVVIELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
             DESD+ Q  R+V + K      D ++  L  +TSLQ+  SVN+  +    +P++  L 
Sbjct: 342 VADESDKSQKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDGRPQQKALT 401

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+ +V FR   V RR  Y L +  DR H+L G  I   N+DEV+++IR S  P   + 
Sbjct: 402 QVLREWVEFRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAP---KE 458

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +LM++                            LSE Q   ILE+RL +L  L    I  
Sbjct: 459 DLMKK--------------------------FDLSERQAEDILEIRLRQLARLEGIKIER 492

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           E+  L  E KE   +L S   L  ++  E+ +   +    RRT I E  +          
Sbjct: 493 EIKELKAEAKELKRVLGSEEALRELVVGEIEADAKQYGDERRTLIEEAQITKVTAQV-SD 551

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S   +V        R +   G   S +  +D D +   +   T    +   S 
Sbjct: 552 EPVTVFISQRFWV--------RTRLGHGIDASAIAFKDGDSIAATYECRTTDQCIVICSN 603

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G V    V  LP G     G  L   + L  G +I                 V+ +T  G
Sbjct: 604 GRVCSIPVSALPTGRGD--GAPLATFIELAPGAKIAHAF------CGKTETPVLISTSAG 655

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET-CTQENDILLTTKLGQCVRFPISAIR 714
                 + D +  N++GK  + +     +  V    TQ + +   +K  + + F +S ++
Sbjct: 656 YGFPCFIGDMVGRNKAGKQFISVKEETILPPVLLAPTQHSLVAALSKNARLLVFVLSELK 715

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +  G    G+  I L +GD++ +  ++   +
Sbjct: 716 LLQG-GGKGMMLIDLKEGDELTACTVINTPE 745


>gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 752

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 241/732 (32%), Positives = 382/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  YLL K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYLLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC]
 gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601]
 gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC]
 gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601]
          Length = 780

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/750 (32%), Positives = 367/750 (48%), Gaps = 82/750 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK----KYVKCARISGEV 81
           Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M +MG+ ++     K VK AR+ G+V
Sbjct: 25  QRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLSYSGNAPAKPVKSARVVGDV 84

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G++HPHG+ + YDAL R+AQD+S R  LI+GQGNFGS DGD  AA RYTE RL K A  
Sbjct: 85  LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTKIAGL 144

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL ++ + TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP+HNL EV D 
Sbjct: 145 LLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 204

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           CVA++ NP +  + L  ++ GPD+P G  I+     I++AY  GRGS+ +R    IE  +
Sbjct: 205 CVALVKNPRLSDEELFALVPGPDYPGGGQIISSVADIQDAYRGGRGSLKVRARWKIEDLA 264

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE------------------ 302
             + Q+VVTE+P  V+   +LE+I ++   K       L  E                  
Sbjct: 265 RGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAGKKALTQEQQQLKASMLAVLDGVRDE 324

Query: 303 -SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
            S     R+V E K G      ++  L  +TSL++   +N+  +    +P + +L  +L 
Sbjct: 325 SSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLETSAPINLTMVGLDGRPVQKSLRQMLA 384

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +V FR++ + RR+++ L K  DR H+L G  + + N+DEV+ IIR + +P+ A      
Sbjct: 385 EWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVLLNIDEVIAIIRAADDPKAA------ 438

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        LSE Q   ILE+RL +L  L    I  EL+ 
Sbjct: 439 -----------------------LMARFSLSERQAEDILEIRLRQLARLEAIKIEQELSE 475

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  E  +  DIL++ + L  ++ +E+ +   +    RRT I E    + +   +V E   
Sbjct: 476 LRKEQGQLEDILANPASLRRLMVREIEADAKQFADARRTLIQEEKKVVAE-VKVVDEPTT 534

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V VS  G+V        R ++  G        +  D +   F   T   ++ F S G +Y
Sbjct: 535 VVVSQKGWV--------RTRQGHGHAADSFAFKAGDGLYGTFECRTVDQLIVFGSNGRLY 586

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
              V +LP G     G+ +  ++ L  G +I      P          ++ A   G    
Sbjct: 587 SVPVAQLPGGRGD--GQPVTTLIELEPGTQIAHYFAGPVQAQ------LLLAGSGGYGFV 638

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---------DILLTTKLGQCVRFPI 710
            ++   +  N+ GK  + L   + + +       +          +   +  G+ + F I
Sbjct: 639 AQVEHMVSRNKGGKAFVALGEGETLCAPSHVAGTSASQPLAAATHVCCASAGGRILTFDI 698

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             ++    +   G+  I+L   D +   A 
Sbjct: 699 GELKQMD-KGGRGLMLIALEDKDSLAGAAA 727


>gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 749

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 63  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 122 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 182 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 242 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 296

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 297 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 357 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 399

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 400 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 448 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 508 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 559

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 560 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 611

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 612 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 669

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 670 NIPSAEAAKGDD 681



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 508 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 565

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 566 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 621

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 622 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 675


>gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 752

 Score =  542 bits (1397), Expect = e-152,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
 gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238]
          Length = 756

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 244/726 (33%), Positives = 395/726 (54%), Gaps = 63/726 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+  N KY K
Sbjct: 8   EGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSANAKYKK 67

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 68  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 126

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L K A  LL ++ + TVD++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP
Sbjct: 127 ESKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVGMATDIP 186

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HN+ EV +  V ++DNP  DLD +M  I+GPD+PT   +I   + IK  Y+TGRGS+ +
Sbjct: 187 PHNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTGRGSVKM 246

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V H E +      IV+T +P+QV+ + +LE+IA  +R K++  + DLRDESD +   R
Sbjct: 247 RAVWHKEGSD-----IVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDHENPTR 301

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREE 367
           +VI  +     A+ ++N L+  T L+  F VN+  +    +P+   L+ IL  ++ FR  
Sbjct: 302 IVIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLDLRPQVKGLVSILNEWIEFRRT 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V +R ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   + ELM R       
Sbjct: 362 TVRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDP---KHELMTR------- 411

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L+ +Q  AILE++L +L  L    IR E + L  E  + 
Sbjct: 412 -------------------FDLTAIQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDQL 452

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
             +L S  RL  +IK+E+L+  ++    RR+ ++E      M + D I  E + V +S  
Sbjct: 453 EKLLGSERRLSTLIKKEILADAEKFGDDRRSPLIERDEAKAMTERDLIPSEAITVILSDK 512

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G++        R  +      + +  +  D         ++   +F  + G  Y  +   
Sbjct: 513 GWI--------RHAKGHEVDPTTLNFKSGDKYLTHAHGKSNAPAVFIGNNGRSYALESHT 564

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +++G+ +   L++  G +IT ++   ED++       + ++  G     K SD 
Sbjct: 565 LPSA--RSQGEPITGRLNITAGSQITHVVMGEEDQTW------LISSDAGYGFVCKGSDL 616

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK  + L     +++ ET +    ++IL  T  G+ + FPI  +         G
Sbjct: 617 LSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEILAITNEGRMLLFPIKDLPQLG--KGKG 674

Query: 724 VRGISL 729
            + I++
Sbjct: 675 NKIINI 680



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S+     +  ++Q  L  S+ G+G      D    N++GK          N +  ++   
Sbjct: 585 SQITHVVMGEEDQTWLISSDAGYGFVCKGSDLLSKNKNGK---TLLTLPDNSL--VMNPE 639

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            V+D  +D+I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 640 TVSDLDSDEILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 679


>gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 752

 Score =  542 bits (1396), Expect = e-152,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVC 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 760

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 133 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 193 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 253 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 307

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 308 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 368 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 411 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 459 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 519 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 571 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 622

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 623 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 680

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 681 NIPSAEAAKGDD 692



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 519 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 577 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 633 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 686


>gi|240047650|ref|YP_002961038.1| DNA topoisomerase IV subunit A [Mycoplasma conjunctivae HRC/581]
 gi|239985222|emb|CAT05235.1| Topoisomerase IV subunit A [Mycoplasma conjunctivae]
          Length = 864

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 222/725 (30%), Positives = 378/725 (52%), Gaps = 38/725 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I + S+ + +   ++ YA  VI  RAIPD+RDGLKPV RRIL+ M  +G++  K Y K
Sbjct: 6   NQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKK 65

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG+++IYDAL RM+Q+W + + L++  GN GS+D DP AA RYTE 
Sbjct: 66  SARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPAAAMRYTEV 125

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL++ +  +L+ L K+ + + PN+D S +EP VL    PN+LVNG  GIA G AT IP H
Sbjct: 126 RLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPH 185

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+DG +A+I N  I    L  II GPDFPTG ++    GI +A++ G+G I +   
Sbjct: 186 NLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGGIVYDNGGISDAFSKGKGRISLVAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I   + D   I +++IPY + KA ++ +I ++  E+++  I ++ D+SDR G  + I+
Sbjct: 246 YEIVNKNKDI-SIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISID 304

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L+  A+ D+++N L + T +Q  +S N VA+    P+  +L  ++K ++   + + ++  
Sbjct: 305 LEADANVDLVVNYLLQKTDMQIYYSYNSVAICNNSPKLVSLSEMIKYYLDHLKNIKLKEI 364

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L K++ R  ++ G        DEV+++IR S N                 IKDLI  
Sbjct: 365 DYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDN------------SKIGVIKDLI-- 410

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                           +++Q  AI ++RL RL+ + +++  +E   L  +I+   ++ + 
Sbjct: 411 -----------AHFGFTQIQAEAIAQMRLYRLSKIDQENFLSESKELENKIELLNNLKND 459

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
            +     + + L  V++    PR+T+I   +  + +  ED I  E++   ++  GY K++
Sbjct: 460 STAFKKFLIKTLKQVQNNFGQPRKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKI 519

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            L  +              ++ +DF+  L  ++    +   ++   +      +L   S 
Sbjct: 520 SLKNFSLS-----DLDKYAIKKDDFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSY 574

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G  L   +   Q E I   +   E++   NN  ++  +KHG  +R  L     +   
Sbjct: 575 KNIGNDLKIEVDFQQDEYIVAQINISENK---NNSNIILVSKHGLAKRVSLDSLFNLRTK 631

Query: 672 GKIAM-KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               + KL   DE++         +I + + L + ++     I    GRNS GV+  +L 
Sbjct: 632 KLTNIFKLKEHDELIGAYLTDNLANIAIISNLNRSLKVAEIDI-PIYGRNSAGVKLATLK 690

Query: 731 KGDQV 735
           KG+Q+
Sbjct: 691 KGEQI 695



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 13/179 (7%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL---KNDSSVEGNI 785
           + K D +I +  +   D  +         + A  +L     + I +    + D   +  I
Sbjct: 534 IKKDDFLILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYI 593

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDF---RISNRSGKGIRATDVSKINEIGALV 842
             +           I+ VS+ G  KR S       R         + T++ K+ E   L+
Sbjct: 594 VAQINISENKNNSNIILVSKHGLAKRVSLDSLFNLRTK-------KLTNIFKLKEHDELI 646

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             +  ++   I ++S+    ++V   +I I  R + GV + +  K E++     I + E
Sbjct: 647 GAYLTDNLANIAIISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQIQLAYPIADGE 705


>gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/754 (30%), Positives = 367/754 (48%), Gaps = 70/754 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++    ++ +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M 
Sbjct: 3   SKDQGPAEPDSPAAIVDAPFETALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMR 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           Q+ +  +  Y K AR+ GEV+GKYHPHG+ A+YDA+ R+AQ ++LR  L+EGQGNFG++D
Sbjct: 63  QLRLSPDSAYKKSARVVGEVLGKYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGNID 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL + A  L+  L + TVDF P Y+   +EPV+    +PN+L NG  G
Sbjct: 123 GDNAAAARYTEARLTRTAISLMAGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNA 240
           IAVGMATNIP+HN+ EV++  + VI+NP ++   LM+I++GPD  TG +I+     I  A
Sbjct: 183 IAVGMATNIPSHNVDEVIEATLEVIENPAVEHARLMQIMQGPDLATGGLIVDSPETISAA 242

Query: 241 YATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
           Y TGRGS  IR   H             IE+  G + Q++++EIPYQV K  ++E+IA++
Sbjct: 243 YETGRGSFRIRARFHAAEAESAADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIAQV 302

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           + +K++  + D+RDESD Q   V++   R    +++   LYR T L++ F +NM  L+  
Sbjct: 303 IADKKVPILEDVRDESDEQIRIVLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLDAT 362

Query: 348 KPER-FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           +      L  +L+ ++A + +++ RRT++ L K  DR  +L G  IA  NLD V+ IIR 
Sbjct: 363 RTPMVMGLKELLQNWIASQIDILQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEIIRT 422

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
              P+                                     L++ QT AIL +RL  L 
Sbjct: 423 EDEPK-----------------------------PVMMAEFGLTDRQTEAILNMRLRSLR 453

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV 521
            L    +R E + L  E  E   +L S  R    +K++L +++ E         RRT I 
Sbjct: 454 KLEEMQLRQEKDDLLKEQDELQKLLESPVRQRTRLKRDLNALRKEYGKDTALGARRTTID 513

Query: 522 E--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           E    ++   +  I +E   V +S  G++        RA +           ++ D +  
Sbjct: 514 EAEPTVEFSMDAMIEKEPTTVILSARGWI--------RAAKGHADLSQEWKFKEGDELAF 565

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            F   T   +L  +  G  Y     +LP       G+ +  ++ ++    I         
Sbjct: 566 AFHAQTTDKLLIATDDGRFYTLGADKLPGARGF--GEPVRTMVDIDNSAHIVFAWA---- 619

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILL 698
                   ++ A+  G     K  D +   R G+  M L    ++  V       + + +
Sbjct: 620 --HKPGERLLLASTLGKGFVIKSDDLLAETRKGRAVMTLKGDAKLARVAHIGEGHDHVAV 677

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
                + V F +  +   +     GV+      G
Sbjct: 678 VGDNRKLVVFNLEEMPEMS--RGQGVQLQRYRDG 709


>gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
 gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685]
          Length = 758

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/738 (32%), Positives = 372/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    + E        V++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLTHDNSE-------RVALRAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL +LG+ TV++  N+DG+ QEP  L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRYAEVLLSELGQGTVEYTANFDGTLQEPKYLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  VA++DNPD  LD L+  I+GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVANALVALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V   E+       IV++ +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 RKIYRTGRGSVRMRAVWRKEEGE-----IVISALPHQTSGAKVLEQIASQMRSKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDFDQVMNHLFATTDLEKSYRINLNMIGLDRRPAVKDL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++++R E V RR  Y L K   R H+L GL IA  N+DEV+ +IR    P+   
Sbjct: 348 REILTEWLSYRRETVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILEL+L +L  L    IR
Sbjct: 405 --------------------------PVLVARFGLSETQAEAILELKLRQLARLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E      +L+S  +L  +IK+E+++        RR+ + +      M + D 
Sbjct: 439 GEQDELAQERDRLQALLASERKLATLIKKEIIADAQNYGDARRSPLHQRAEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSESGWV--------RSAKGHDIDPSGLNYKAGDSFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L                 + +N  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEHVLMAADNQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       SD +  NR+GK  + L    ++L+      ++D +L  T+ G+ + FP+ 
Sbjct: 603 DAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLAPLAIHGDDDMLLAITQAGRMLMFPVH 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 DLPQLS--KGKGNKIVSI 678



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   + A            I       A   L          
Sbjct: 515 RSAKGHDIDPSGLNYKAGDSFRAAA--RGKSNQPVVFIDSTGRSYALDPLTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +    Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 573 PLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDLVARNRAGK---AMLTLP 629

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            N    ++A   ++ +D ++L ++  G ++  PV+++   S+           K  ++VS
Sbjct: 630 ENA--KVLAPLAIHGDDDMLLAITQAGRMLMFPVHDLPQLSK----------GKGNKIVS 677

Query: 894 V 894
           +
Sbjct: 678 I 678


>gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus
           c2]
 gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2]
          Length = 758

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/764 (30%), Positives = 368/764 (48%), Gaps = 72/764 (9%)

Query: 1   MTEHIISSDEEEEKGI----------TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M+    +   E   GI             SI +  + +YL YA+ VIL RA+P + DGLK
Sbjct: 1   MSSDEFNHGPENGHGIGMGGNSTDGFERRSIAEFSEQAYLNYAMYVILDRALPSVCDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+    K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L
Sbjct: 61  PVQRRIVYAMSELGLTAASKHKKSARTVGDVIGKFHPHGDSACYEAMVLMAQPFSYRYPL 120

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           I+GQGNFGS D DP   AA RYTE RL   AH LL +  + TVD++PN+DG+ +EP +L 
Sbjct: 121 IDGQGNFGSPD-DPKSFAAMRYTESRLTAYAHSLLAEAEQGTVDWQPNFDGTLEEPTLLP 179

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT- 227
           AR PNVL+NGG GIAVG++T+IP HNL EVV   +A++D P+  +D L   +RGPDFPT 
Sbjct: 180 ARLPNVLLNGGMGIAVGLSTDIPPHNLREVVAATIALLDEPESTVDDLCRHLRGPDFPTE 239

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
             +I     I   Y TG GS+  R    +E+       I++T +P+QV+ + +LE+IA  
Sbjct: 240 AEIITPPDEIMQMYRTGTGSVRQRARYEVEQGE-----IIITALPFQVSGSKILEQIAAQ 294

Query: 288 VREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN 345
           +  K++  + DLRDESD +   R+VI  +     A+ ++  L+  T L+  + VNM  + 
Sbjct: 295 MNAKKLPLVTDLRDESDHEAPTRLVIIPRSRQVDAEALMAHLFATTDLEKSYRVNMNVIA 354

Query: 346 -GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              +P    L  +L  ++ FR + + RR ++ L K  +R  +L GL IA  N+DEV+ +I
Sbjct: 355 LDGRPRVMNLKDLLSEWLQFRRQTLTRRIQWRLAKVENRLEILAGLLIAFLNIDEVIAVI 414

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R +  P   + EL+ R                            L+E Q  AILE+RL +
Sbjct: 415 READEP---KAELIAR--------------------------FDLTERQAEAILEIRLRQ 445

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
           L  L    I+ E   L  E +    +L+  SRL  +++ EL     +    RR+R+V   
Sbjct: 446 LAKLEEIAIKKEQGELMAESEILRGLLADESRLRNLLRDELQDDAQKYGDARRSRLVTRG 505

Query: 525 LDMEDED--CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                 +   I  E + V +S  G++        RA +        +  +  D       
Sbjct: 506 AAQALAETALISSEPVTVVLSKNGWI--------RAAKGHDVDPVALSYKAGDGYLVHMN 557

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
             +  SV+     G  Y      LP    + +G+ L   LS   G +   ++       +
Sbjct: 558 GKSTQSVILLDDTGRAYTLAAHSLPSA--RGQGEPLTGRLSPPTGAQFNQMV------MA 609

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTK 701
            +   V+     G        + +   R+GK+ + L     +   +    Q   I   + 
Sbjct: 610 DDKDAVLLWQSGGYGFITPFEELLSRQRAGKVMVSLQDGATLGAPIRLDDQVQRIAFASS 669

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
            G  +    + I   +     G + + L  G  +I+   ++  +
Sbjct: 670 DGHVLILERAEIPQLS--KGRGNKLMGLKSGFTLIAACALVEGE 711


>gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
 gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160]
          Length = 773

 Score =  542 bits (1396), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/766 (32%), Positives = 377/766 (49%), Gaps = 70/766 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++ +    E       +++ +  + +YL YA++V+ GRA+PD+ DG KPV RRILF M +
Sbjct: 4   DNTLDLFNEPPSDSDVLTLGNYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFAMNE 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DG
Sbjct: 64  MGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDG 123

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL   A  LL ++ + TVDF PNYDGSF+EP VL AR P VL+NG  GI
Sbjct: 124 DGAAAMRYTEARLTPIAKLLLGEIDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGASGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAY 241
           AVG+AT IP+HNL EV    VA+I +P +    LM+ + GPDFP G  I+     I  AY
Sbjct: 184 AVGLATEIPSHNLREVAGAAVALIRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAY 243

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGS+ +R    IE  +  + Q+V+TE+P       +LE+I E +  K  +    L  
Sbjct: 244 ETGRGSLKVRARWKIEDLARGQWQLVITELPPNTAAQKVLEEIEEQINPKIKLGKKALTP 303

Query: 302 E-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFSVNM 341
           E                         R+V E K         +N L  +TSL+S   +NM
Sbjct: 304 EQLQTKQTLLGLVDAVRDESGKDAPVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNM 363

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V + G  +P +  L  IL  ++AFR   V RRT++ L+K  DR H+L G  I   N+DEV
Sbjct: 364 VMVGGDGRPRQKGLSEILHEWIAFRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEV 423

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +RIIR S  P+ A                                   L++ Q   ILE+
Sbjct: 424 IRIIRESDEPKVA-----------------------------LMAAFGLTDRQAEDILEI 454

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L +  I  EL  L  E  +  ++L S S +   + +E+ +   +    RRT +
Sbjct: 455 RLRQLARLEKIKIEKELAELREEKAKLEELLGSESAMKRQLIKEIEADAKQYGDERRT-L 513

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           ++       E  +V E + V VS  G+V        RA +  G   +G   +  D +   
Sbjct: 514 IQQEKRATFEARVVDEPVTVVVSQKGWV--------RALKGHGLDAAGFTFKAGDGLYAA 565

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F   T  +++ + S G VY   V +LP G     G  + +++ L  G             
Sbjct: 566 FQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGD--GVPVTSLIELESGSH------LMHYY 617

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLT 699
           ++     ++ A+ +G     K+ D +   ++GK  M +D+    L+      +   +   
Sbjct: 618 AASAEQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAEQVACL 677

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +  G+ + F +  ++  +G    GV  + L   + ++    +  A 
Sbjct: 678 SSGGRLLVFGLDEMKTLSG-GGRGVTLMGLDDNETLVQALAINKAG 722



 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 56/167 (33%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +  A  +L  G  + +          G+ 
Sbjct: 553 GFTFKAGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      EQ +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 613 LMHYYA--ASAEQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAA----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + D +Q+  +S  G L+   ++E++  S   +GV +     +E +V
Sbjct: 667 MLPDAEQVACLSSGGRLLVFGLDEMKTLSGGGRGVTLMGLDDNETLV 713


>gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
 gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2]
          Length = 752

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/722 (33%), Positives = 379/722 (52%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P   + ELM R          
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEP---KPELMSR---------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 407 ----------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S  G+V
Sbjct: 451 LASERKMSNLLKKELQADADAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQSGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V    + + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENARVMQPVVIEDETDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLSYKAGDSFKSA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 +V     ++ D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 629 RVMQ-PVV---IEDETDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
 gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881]
          Length = 745

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/733 (32%), Positives = 371/733 (50%), Gaps = 64/733 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
               S  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K
Sbjct: 3   DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYT
Sbjct: 63  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   A  LL +LG+ TV++ PN+DG+  EP +L AR PNVL+NG  GIAVGM+T+IP
Sbjct: 122 ESKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HNL EV + C+ ++ +P   LD LM+ I+GPDFPT   VI     I   YA G+GS+  
Sbjct: 182 PHNLREVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLKQ 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E        IVVT +PYQV+ A +LE+IA+ + +K++  ++DLRDESD +   R
Sbjct: 242 RAVYEREDGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTR 296

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
           +VI  +      + +++ L+  T L+  + VN+  +    +P+  +L  IL  ++ FR  
Sbjct: 297 LVITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMV 356

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K  +R H+L GL  A  N+DEV+ IIR    P   +  LM+R       
Sbjct: 357 TVRRRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAP---KPVLMER------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S+ Q  AILEL+L  L  L    IR E + L  E +  
Sbjct: 407 -------------------FGISDRQAEAILELKLRHLAKLEEMKIRGEQDELNEEREYL 447

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
              L S +++  ++ +EL    ++    RR+ +VE       ++ D +  + + V +S  
Sbjct: 448 ETTLGSMAKMKKLVAKELKDDAEKYGDDRRSPLVERDDAKALDETDLLSADPVTVVLSEK 507

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +       G+  +  D         ++  V F  S G  Y      
Sbjct: 508 GWV--------RAAKGHEVDVEGLSYKAGDKYKASAKGKSNQPVCFIDSTGRTYSLPAHT 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    Q           L+      +   F       +    + +T  G     + +D 
Sbjct: 560 LPSARGQGE--------PLSGRVSPPSGASFMAAVMGKDKDAYLMSTDAGYGFVVRYADL 611

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +   ++GK  + +     +LS +    T ++ I L +  G+ + FP+S +         G
Sbjct: 612 LANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSNEGRLLVFPVSELPEMV--RGKG 669

Query: 724 VRGISLAKGDQVI 736
            + +S+  G +V 
Sbjct: 670 NKMMSI-PGARVA 681


>gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
 gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F]
          Length = 757

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/821 (29%), Positives = 390/821 (47%), Gaps = 79/821 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +L + TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D +++ L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  + L K   R H+L GL IA  N+DEV+ IIR   +P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQRFSISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIAPSGLSYKAGDSFRAAARGMSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L                 + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEHVLMAPDSQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    ++L        ++ +L  T +G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITAVGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            +   +     G + +S+      A  D++  + ++    +       +        R  
Sbjct: 663 DLPELS--KGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTS----ITLHFGKRKLTLRPE 716

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                     +  S +   +      ++    + I T SE+
Sbjct: 717 DLQKFRAERGRKGSPLPRGLQRIDRIDVDAPPRAIATESEE 757



 Score = 44.8 bits (104), Expect = 0.077,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 31/218 (14%)

Query: 692 QENDILLTTKLGQCVRFPISAIRV---------FAG--RNSVGV----RGISLAKGDQVI 736
            ++     T+ G+        I             G  R++ G      G+S   GD   
Sbjct: 477 GDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIAPSGLSYKAGDSFR 536

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           + A            I       A   L                     +      +   
Sbjct: 537 AAA--RGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMAPD 594

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            Q +L  S+ G+G   +  D    NR+GK          N    L  +     +D ++ +
Sbjct: 595 SQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLPENAK-VLPPLEIYGPDDMLLSI 650

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  G ++  PV ++   S+           K  ++VS+
Sbjct: 651 TAVGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           31758]
 gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola]
 gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1]
 gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII]
 gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+]
 gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10]
 gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP
           32953]
 gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua]
 gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92]
 gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125]
 gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola]
 gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII]
 gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+]
 gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516]
 gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A]
 gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004]
 gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038]
 gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27]
 gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003]
 gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 757

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/814 (29%), Positives = 384/814 (47%), Gaps = 69/814 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +L + TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D +++ L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  + L K   R H+L GL IA  N+DEV+ IIR   +P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQRFSISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGDDRRSPLTERGEAKAMSEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L                 + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEHVLMAPDSQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    ++L        ++ +L  T +G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITAVGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +   +     G + +S+           +        +    +     +  L   D ++
Sbjct: 663 DLPELS--KGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLTLRPEDLQK 720

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
             + +           +R   + +        +E
Sbjct: 721 FRAERGRKGSPLPRGLQRIDRIDVDAPPRAIATE 754



 Score = 44.8 bits (104), Expect = 0.075,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 31/218 (14%)

Query: 692 QENDILLTTKLGQCVRFPISAIRV---------FAG--RNSVGV----RGISLAKGDQVI 736
            ++     T+ G+        I             G  R++ G      G+S   GD   
Sbjct: 477 GDDRRSPLTERGEAKAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFR 536

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
           + A            I       A   L                     +      +   
Sbjct: 537 AAA--RGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMAPD 594

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
            Q +L  S+ G+G   +  D    NR+GK          N    L  +     +D ++ +
Sbjct: 595 SQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLPENAK-VLPPLEIYGPDDMLLSI 650

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           +  G ++  PV ++   S+           K  ++VS+
Sbjct: 651 TAVGRMLMFPVADLPELSK----------GKGNKIVSI 678


>gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7]
          Length = 767

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 358/742 (48%), Gaps = 70/742 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            +++    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+
Sbjct: 17  DITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPVKSARV 76

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A YDA+ RMAQD+ LR  L++GQGNFGS DGD  AA RYTE RL  
Sbjct: 77  VGDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTEARLTP 136

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L + TVDF  NYDGS +EPV+L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 137 FARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPSHNLRE 196

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHI 256
           V   CVA+I NP +  + L  ++ GPDF  G  I+     I + YA+GRGSI  R     
Sbjct: 197 VAQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKARARWQF 256

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-------------- 302
           E+ +  + Q+VV E+P   +   +LE+I +    K       L  E              
Sbjct: 257 EELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALMLGLLDA 316

Query: 303 -----SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLI 355
                      R+V E K      D  +N L   TS++   S+N+V +    +P +  L 
Sbjct: 317 VRDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPGQRALR 376

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ FR + + RRT+Y L+K  DR HVL G  +   N+DEV++ IR S  P  A  
Sbjct: 377 QVLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAA-- 434

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LSE Q   ILE+RL +L  L    I  
Sbjct: 435 ---------------------------LMQRFDLSERQAEDILEMRLRQLARLEGFKIEK 467

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
           EL +   E     ++L + S    ++ +E+ +   +    RRT I         E+ +V 
Sbjct: 468 ELAAQRDEQAALRELLDNPSAFKRLMIKEIEADAKQYGDDRRTLIE-VAERAVLENRVVE 526

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E + V +S  G++        R+++  G   S    +  D + D     +   ++ FS+ 
Sbjct: 527 EPVTVIISQRGWL--------RSRQGHGHDASQFNFKAGDGLYDAIECLSTDELVAFSNT 578

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G VY   V  LP       G+ + +++ +  G RIT ++     +        V  T+ G
Sbjct: 579 GRVYTVAVSSLPSARGD--GQPVTSMMEVESGSRITHMIAGAAQQRY------VLGTQAG 630

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIR 714
                 L D     R+GK  + LD  D ++        +  + +  K G+ +   +S ++
Sbjct: 631 YGFITTLKDLTTRQRAGKQFITLDDGDVLIKPLRLRDTDQHLAMLAKKGRFLVVALSELK 690

Query: 715 VFAGRNSVGVRGISLAKGDQVI 736
             +G    G   + L  GD + 
Sbjct: 691 RLSG-GGRGTILMGLDAGDILA 711



 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            +   GD +      L  D           +  A   L S   +            G+  
Sbjct: 552 FNFKAGDGLYDAIECLSTDELVAFSNTGRVYTVAVSSLPSARGDGQPVTSMMEVESGSRI 611

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                    +++++L  ++ G+G  T+  D     R+GK          ++   L+    
Sbjct: 612 THMIAG-AAQQRYVL-GTQAGYGFITTLKDLTTRQRAGKQFITL-----DDGDVLIKPLR 664

Query: 847 VNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D DQ + +++ KG  + V ++E++  S   +G ++      + + 
Sbjct: 665 LRDTDQHLAMLAKKGRFLVVALSELKRLSGGGRGTILMGLDAGDILA 711


>gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 752

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895]
 gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895]
          Length = 752

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/745 (31%), Positives = 380/745 (51%), Gaps = 68/745 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   L+ +++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGITETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAQGLNYKSGDSWKASAKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         +   ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDEQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V    + + +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDETDMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL------AKGDQVISMAIVLHADA 746
           ++         D +  + ++     
Sbjct: 673 NIPSAEAARGDDTLAQLYVLPPQST 697



 Score = 50.2 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G++   GD     A            I       A   +          
Sbjct: 511 RSAKGHDIDAQGLNYKSGDS--WKASAKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  EQ +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDEQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
                 +V     ++ D ++ ++  G ++  PV+++   S+  KG  I +         D
Sbjct: 629 HVMP-PVV---IEDETDMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGD 683

Query: 889 ERVVSVERIRES 900
           + +  +  +   
Sbjct: 684 DTLAQLYVLPPQ 695


>gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
 gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383]
          Length = 773

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/809 (31%), Positives = 385/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFASSDAPDAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    V +I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIA 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P++A                                   LSE Q   I
Sbjct: 421 DEVIRIIRESDEPKSA-----------------------------LMSAFGLSERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDHL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G     G  + +++ L  G  +       
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSHLMHYFA-- 618

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
               +  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+          +
Sbjct: 619 ----APADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLIGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            M                 +   + +  +
Sbjct: 734 AMDETLSYAGLAPHVGKRARKGRAPDTKL 762



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +      L  G  + +          G+  
Sbjct: 554 FSFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +Q +L  S  GFG      D     ++GK     D   +     L  +  
Sbjct: 614 MHYFA--APADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAV----PLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 713


>gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
 gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4]
          Length = 773

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/809 (30%), Positives = 387/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +     ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTADLFAGPDAPDTDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGNFGS
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  +    
Sbjct: 241 AAYETGRGSLKVRAKWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  YTSL+S  +
Sbjct: 301 LTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNAT 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L+ IL  +V +R+  + RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGADGRPGQKGLLTILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P++A                                   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKSA-----------------------------LMSAFGLTERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGDDRR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +G   +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   ++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH------LM 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++  +  ++ A+ +G     K+ D +   ++GK  M +D+    L+          +
Sbjct: 615 HYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPVLPNATQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFAMDEMKTLSG-GGRGVTLMALDDKETLVQALAIDPAGVVLIGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                              +   + +  +
Sbjct: 734 VQDETLSYAGLAPHIGKRARKGRAPDTKL 762



 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G S   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFSFKAGDGLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYYA--APVDQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFAMDEMKTLSGGGRGVTLMALDDKETLV 713


>gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
 gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1]
          Length = 752

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/722 (32%), Positives = 364/722 (50%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              Q           L     +             ++  ++ A+  G       +D +  
Sbjct: 563 ARGQGE--------PLTGKLTLLPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLLPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2]
 gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2]
          Length = 745

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/734 (32%), Positives = 372/734 (50%), Gaps = 64/734 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
               S  + +  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K
Sbjct: 3   DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKYKK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYT
Sbjct: 63  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L   A  LL +LG+ TV++ PN+DG+  EP +L AR PNVL+NG  GIAVGM+T+IP
Sbjct: 122 ESKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HNL EV + C+ ++ +P   LD LM+ I+GPDFPT   VI     I   YA G+GS+  
Sbjct: 182 PHNLREVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLKQ 241

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E+       IVVT +PYQV+ A +LE+IA+ + +K++  ++DLRDESD +   R
Sbjct: 242 RAVYEREEGD-----IVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTR 296

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
           +VI  +      + +++ L+  T L+  + VN+  +    +P+  +L  IL  ++ FR  
Sbjct: 297 LVITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMV 356

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K  +R H+L GL  A  N+DEV+ IIR    P   +  LM+R       
Sbjct: 357 TVRRRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAP---KPVLMER------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S+ Q  AILEL+L  L  L    IR E + L  E +  
Sbjct: 407 -------------------FGVSDRQAEAILELKLRHLAKLEEMKIRGEQDELNEEREYL 447

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
              L S +++  ++ +EL    ++    RR+ +VE       ++ D +  + + V +S  
Sbjct: 448 ETTLGSMAKMKKLVAKELKDDAEKYGDDRRSPLVEREDAKALDESDLLSADPITVVLSEK 507

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        RA +       G+  +  D         ++ SV F  S G  Y      
Sbjct: 508 GWV--------RAAKGHEVDVEGLSYKAGDKYKACAKGKSNQSVCFIDSTGRTYSLPAHT 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    Q           L+      +   F       +    + +T  G     + +D 
Sbjct: 560 LPSARGQGE--------PLSGRVSPPSGASFMAAVMGKDKDAYLMSTDAGYGFVVRYADL 611

Query: 666 IQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +   ++GK  + +     +L  +    T ++ I L +  G+ + FP+S +         G
Sbjct: 612 LANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSNEGRLLVFPVSELPEMV--RGKG 669

Query: 724 VRGISLAKGDQVIS 737
            + +S+  G +V  
Sbjct: 670 NKMMSI-PGARVAD 682



 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 16/193 (8%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD+  + A      +          +      L S   +    
Sbjct: 511 RAAKGHEVDVEGLSYKAGDKYKACAKGKSNQSVCFIDSTGRTYSLPAHTLPSARGQGEPL 570

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G  +      +   +   L  ++ G+G      D   + ++GK +       
Sbjct: 571 SGRVSPPSG--ASFMAAVMGKDKDAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
                  +A      +D I LVS++G L+  PV+E+    R  KG  + S        + 
Sbjct: 629 RVLPPQPIASTT---DDLIALVSNEGRLLVFPVSELPEMVR-GKGNKMMSIPGARVADRV 684

Query: 889 ERVVSVERIRESE 901
           E V  V+ +  ++
Sbjct: 685 EFVQDVQVVGPND 697


>gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 760

 Score =  542 bits (1395), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 133 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 193 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 253 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 307

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 308 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 368 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 411 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 459 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 519 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 571 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 622

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 623 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 680

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 681 NIPSAEAAKGDD 692



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 519 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 577 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 633 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 686


>gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
 gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN]
          Length = 784

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/778 (30%), Positives = 366/778 (47%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++              ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQPTLDFTTAGDAGDALDLAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYV-------KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++           K AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  LI+G
Sbjct: 61  DRMGLGYSGPTRSTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL +    LLD++ + TVDF PNYDGS +EP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLSRITSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL E+ D C+A+I  P +  D L+ ++ GPD+P G  I+ 
Sbjct: 181 ALLNGASGIAVGLATEIPSHNLREIADACIALIKTPSLSQDDLLALVPGPDYPGGGQIIS 240

Query: 234 RTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             G I +AY TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   K 
Sbjct: 241 SAGDIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQRVLEEIEEITNPKV 300

Query: 293 IVDIADL-------------------RDESDRQGYRVVIELKRGASA-DVILNQLYRYTS 332
                 L                    + S     R+V E K G +    ++  L  +TS
Sbjct: 301 KAGKKALSQDQTQLKASMLAVLDVVRDESSKDAPVRLVFEPKTGKTPQQELITALLAHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L++   +N+  +    KP + +L  +L+ ++AFR+  + RR+++ L K  DR H+L G  
Sbjct: 361 LETSAPINLTMVGLDGKPVQKSLRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+DEV+ IIR +  P+ A                                   LS+
Sbjct: 421 TVLLNIDEVIAIIRAAEEPKAA-----------------------------LIARFNLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L     +  DIL++   L   + +E+ +    
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKELRESQGKLEDILNNPGSLRRTMVKEIEADAKT 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I      +  E  +V E + V VS  G+V        RA+   G   +    
Sbjct: 512 FADARRTLIQAEKKAV-AEVKVVDEPVTVIVSQKGWV--------RARTGHGHEAASFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   ++ F S G VY   V +LP G     G+ +  ++ L  G ++ 
Sbjct: 563 KAGDGLYATFECRTVDQLIGFGSNGRVYSVPVAQLPGGRGD--GQPVTTLIELESGTQLL 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS----- 686
                        +  ++ +   G      + + +   + GK  + L   + +       
Sbjct: 621 HYFA------GPASATLLLSNSGGYGFLASVENLVSRQKGGKAFLTLGEGETVCPPSHAA 674

Query: 687 ----VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                +       +   +  G+ + F IS ++  A     G+  I L   DQ+   A 
Sbjct: 675 GSTGAQPLPPATHVACASAGGRILTFEISELKTMAN-GGRGLMLIDLEPKDQLAGAAA 731


>gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
 gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92]
          Length = 759

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 251/809 (31%), Positives = 409/809 (50%), Gaps = 69/809 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++     E G   +++ D  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++G+
Sbjct: 1   MTVQTTFEDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP 
Sbjct: 61  KASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL + A  LL ++ + TVD+ PN+DG+ +EP +L AR PNVL+NG  GIA
Sbjct: 120 SFAAMRYTESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+I  HNL EV   CV ++DNP  DLD + EI+ GPD PT   +I  R  +K  Y 
Sbjct: 180 VGMATDILPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRGS+ +R V   E+       I++T +P+QV+ A +LE+IA  +++K++  ++DLRDE
Sbjct: 240 TGRGSVRMRAVYTKEQGE-----IIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           SD +   R+VI  +      + ++  L+  T L+  + VNM  +    KP+   L  IL 
Sbjct: 295 SDHENPTRLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDGKPQVKDLRQILV 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++++R E+V +R  + L K  DR H+L GL +A  N+DEV+ IIR   +P   + EL++
Sbjct: 355 EWLSWRTEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDP---KAELIK 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            L+E+Q  AIL+L+L  L  L    I++E N 
Sbjct: 412 R--------------------------FGLTEIQADAILDLKLRHLAKLEEFKIQSEQNE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  E K+   IL S +++  +IK+E+    +E    RR+ IVE        ++D +  + 
Sbjct: 446 LEEERKKLEGILGSDAKMRKLIKKEIQDAAEEYGDDRRSPIVEREEAQAFSEKDLLSSDP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +       G+  +  D         T+   +   + G 
Sbjct: 506 VTVVISKQGWI--------RAAKGHEIDAVGLNYKSGDAFKLACKGRTNQPTILLDTTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            +  +   LP    + +G+ +   ++L +G  I   +         +   ++ A+  G  
Sbjct: 558 SFTIETHNLPSA--RGQGEPVTGRITLPKGSTIDAAVA------GKDADKILMASDAGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRV 715
              K+SD     ++GK A+ L     I+S       + + +   T  G+ + FP+S +  
Sbjct: 610 FVAKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAAVTNEGRLLVFPVSELPE 669

Query: 716 FAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            A     G + I++      A+ + V+++A +   D            +           
Sbjct: 670 LA--RGKGNKIINIPSARAAAREELVVALATLSKDDTLMVHAGKQHLRLKPSDIEHYRGE 727

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQ 798
                 K     +   S E   + +  EQ
Sbjct: 728 RGRRGNKLPRGYQRVDSLEVDSKQQEAEQ 756



 Score = 45.6 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 69/196 (35%), Gaps = 22/196 (11%)

Query: 719 RNSVGVR----GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G++   GD   +  +      +    +      S      +  +     
Sbjct: 517 RAAKGHEIDAVGLNYKSGD---AFKLACKGRTNQPTILLDTTGRSFTIETHNLPSARGQG 573

Query: 775 LKNDSSVEGNISEERCQELKLKEQF-ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           +  K+   IL  S+ G+G      D     ++GK   A    
Sbjct: 574 EPVTGRITLPKGSTIDAAVAGKDADKILMASDAGYGFVAKISDLTSKTKNGK---AALTL 630

Query: 834 KINEIGALVAVFPV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------ 885
             N    +++   V   + D +  V+++G L+  PV+E+   +R  KG  I +       
Sbjct: 631 PKNA--NIISPIKVATPETDLLAAVTNEGRLLVFPVSELPELAR-GKGNKIINIPSARAA 687

Query: 886 AKDERVVSVERIRESE 901
           A++E VV++  + + +
Sbjct: 688 AREELVVALATLSKDD 703


>gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum]
          Length = 758

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 389/745 (52%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITFDGVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  + +IDNP+  L  +M+ ++GPD+PT   +I  R  I+  Y +G
Sbjct: 181 MATDIPPHNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D++++ L+  T L+  F VN+  +    +PE   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNNRPEVKGLVTILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   +  LM R 
Sbjct: 356 IEFRRTTVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      +S +Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGISAIQADAILDTKLRHLAKLEEMKIRGEQDELA 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ ++E        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLIERAESKALTERDLVPSEAIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  +  D         ++  V+F  S G  Y
Sbjct: 507 VVLSEKGWV--------RHAKGHDVDCQSLSYKSGDQYLAHACGKSNQQVVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    + +G+ +   L++ +G  I  ++   E++        +  +  G    
Sbjct: 559 SLEAHSLPSA--RTQGEPITGRLNITEGSSIRQVVMGEEEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            K  + +  NRSGK  + L    E++        + +DIL  T  G+ + FPI  +    
Sbjct: 611 CKGGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDILAITNQGRMLLFPIKDLPQLT 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      + ++ +S
Sbjct: 671 --KGKGNKIINIPAAKSKEREEFVS 693



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 9/115 (7%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             S  R   +  +EQ  L  S+ G+G      +    NRSGK +     +          
Sbjct: 583 EGSSIRQVVMGEEEQLWLVGSDAGYGFVCKGGELLSKNRSGKALVNLPENSEVMTPQ--- 639

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
                ++D I+ ++++G ++  P+ ++   ++  KG  I +       + E  VS
Sbjct: 640 ASVNLESDDILAITNQGRMLLFPIKDLPQLTK-GKGNKIINIPAAKSKEREEFVS 693


>gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 752

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 752

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH]
          Length = 772

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/809 (30%), Positives = 385/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIREIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
            ++       ++ A+ +G     K+ D +   ++GK  M +D+    L+      + + +
Sbjct: 621 AEQP------LLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEESLAGGALEPHVGKRARKGRAPDTRL 762



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D         L  +  
Sbjct: 614 LHYFA--APAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAA----PLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264]
 gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264]
          Length = 772

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/809 (30%), Positives = 385/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
            ++       ++ A+ +G     K+ D +   ++GK  M +D+    L+      + + +
Sbjct: 621 AEQP------LLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGGALEPHVGKRARKGRAPDTRL 762



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D         L  +  
Sbjct: 614 LHYFA--APAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAA----PLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 756

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 376/742 (50%), Gaps = 69/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEMT-------HDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    V +++NP   L+ L++ ++GPDFPT   +I  R  +
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEV 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKLYQNGRGSVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + VNM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMRQFSLSETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ S        RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQLQALLASDRKLSNLIKKEIQSDAQAYGDDRRSPLRERSEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D    +    ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAVAKGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPITLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQPLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L+      ++++L+  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAITAAGRMLLFPVS 662

Query: 712 AIRVFAGRNSVGVRGISLAKGD 733
            +   +     G + +S++  D
Sbjct: 663 DLPQLS--KGKGNKIVSISSAD 682



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 20/190 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   +  +           I       A   +          
Sbjct: 515 RSAKGHDIDPTGLSYKAGDSFRA--VAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK I     + 
Sbjct: 573 PLTGKLTPPPGATIEQVLMAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                AL  +    D++ ++ ++  G ++  PV+++   S+           K  ++VS+
Sbjct: 633 K----ALAPIEIKGDDNLLMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSI 678

Query: 895 ERIRESEIVD 904
                +E  D
Sbjct: 679 SSADFAEGKD 688


>gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3]
          Length = 752

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/722 (32%), Positives = 373/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586]
 gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586]
          Length = 758

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/761 (31%), Positives = 387/761 (50%), Gaps = 75/761 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDMT-------HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    +A+ID PD  L+AL+  ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKMYESGRGSVRMRAVWRKEDGS-----VVITSLPHQVSGARVLEQIASQMRAKKLPMLD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDGRPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++AFR + V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 REILTEWLAFRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMAKFGLSDTQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDC 532
            E + L  E  +   +L+S  ++  ++K+E+          RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAYGDDRRSPLHERGEAKAMSEHDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 SPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++       + +N  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGASIEQVL------MAADNQRLLLAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR GK  + L     +L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFICTFADLVARNRVGKAVLTLPDNARVLPPLELQRDDDLLLTITAAGRMLLFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +   +     G + +S+      +  D+++ +  +    +
Sbjct: 663 DLPALS--KGKGNKIVSIPAAQLASGDDRILWLMAIAPQSS 701



 Score = 42.1 bits (97), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR GK +     +       ++    +  +D 
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNAR-----VLPPLELQRDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 646 LLLTITAAGRMLLFPVADLPALSK----------GKGNKIVSI 678


>gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
 gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB]
          Length = 757

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/752 (31%), Positives = 376/752 (50%), Gaps = 68/752 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TV+F+PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID P   L+AL++I++GPD+PT   +I  R  I+  Y TGRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI  R V   E+        V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SIRQRAVWKKEEGEA-----VITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      D I+N L+  T L+  + VN+  +    +P    L  IL  ++ 
Sbjct: 297 NPTRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLV 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+            
Sbjct: 357 FRRDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPK------------ 404

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    +SE Q  +ILEL+L  L  L    IR E   L  E
Sbjct: 405 -----------------PVLMSRFGISETQAESILELKLRHLAKLEEVKIRAEQADLEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +    L+S  ++  ++K+EL +        RR+ + E        + + +  E + + 
Sbjct: 448 RDQLQATLASERKMNTLLKKELQADSASYGDDRRSPLREREEAKALSETELVPSEPVTIV 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y  
Sbjct: 508 LSQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    Q           L             +     ++  ++ A+  G      
Sbjct: 560 DPTSLPSARGQGE--------PLTGKLTPPPGAVVEQVLMEPDDQRLLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            SD +  NR+GK  + L     ++  +    +++ +L  T+ G+ + FP+  +   +   
Sbjct: 612 FSDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMS--K 669

Query: 721 SVGVRGISL------AKGDQVISMAIVLHADA 746
             G + IS+      A  D++  + I+    A
Sbjct: 670 GKGNKIISIPSAEAAAGQDKLAWLMILPPGSA 701



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 71/192 (36%), Gaps = 19/192 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  ++ A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    ++  +Q +L  S+ G+G   +  D    NR+GK + A   + 
Sbjct: 575 TGKLTPPPGAVVEQVL--MEPDDQRLLMASDAGYGFICTFSDLVSRNRAGKALLALPENA 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
                 ++    V+  D ++L ++  G ++  PV E+   S+  KG  I S       A 
Sbjct: 633 R-----VMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSK-GKGNKIISIPSAEAAAG 686

Query: 888 DERVVSVERIRE 899
            +++  +  +  
Sbjct: 687 QDKLAWLMILPP 698


>gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 752

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 752

 Score =  541 bits (1394), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 379/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 760

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 378/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 133 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I     I+  Y  GRGS+ +R V
Sbjct: 193 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENGRGSVRMRAV 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 253 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 307

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 308 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 368 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 411 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 459 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 519 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 571 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 622

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+ ++   +     G + I
Sbjct: 623 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLS--KGKGNKII 680

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 681 NIPSAEAAKGDD 692



 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 519 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 577 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 633 -PENAHVMPPLVIEDEHDMLLAITLAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 686


>gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
 gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755]
          Length = 747

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/734 (32%), Positives = 383/734 (52%), Gaps = 63/734 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           + E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   TTEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+    V ++DNP   L  ++++++GPD+PT   +I  R+ I   Y  G
Sbjct: 181 MATDIPPHNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E+ +     IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 241 RGSIKMRAVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+E +      D +++ L+  T L+  + +NM  +    KP    L+ IL  +
Sbjct: 296 HENPIRIVLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDSKPAVKNLLTILTEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFR   V RR  + L+K   R H+L GL IA  NLDEV+ IIR   NP   + EL+ R 
Sbjct: 356 LAFRRTTVTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNP---KAELIAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS+ Q  AIL LRL  L  L   +++ E   L 
Sbjct: 412 -------------------------FQLSDEQAEAILNLRLRHLAKLEEHELKAEQQKLE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E +    IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    E + 
Sbjct: 447 EEREHLQGILGSERRLNNLIKKEIEADAKAFASPRRSPLVERAEAKAISESDLTPTEPVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  +  D         ++  V+F  S G  Y
Sbjct: 507 VILSEKGWV--------RCAKGHDIDVQNLSYKAGDSYLAHAYGKSNQPVVFIDSTGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ +   +SL  G  +  ++       +  +  V+ A+  G    
Sbjct: 559 ALDPLSLPSA--RSQGEPITGKISLPDGATVQCVL------MAEESRKVLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFA 717
            +  D +  N++GK  + L    ++L  +   +  +  ++  +  G+ + FP+S +   +
Sbjct: 611 CQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVSELPELS 670

Query: 718 GRNSVGVRGISLAK 731
                G + I+++ 
Sbjct: 671 --KGKGNKIINISA 682



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+ +S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQNLSYKAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPI 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S  +G   +  C  +  + + +L  S+ G+G      D    N++GK + +   + 
Sbjct: 576 TGKISLPDGATVQ--CVLMAEESRKVLMASDSGYGFICQFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L       + + ++ +S+ G ++  PV+E+   S+  KG  I + +
Sbjct: 634 KVLPPQL---LKEGEENLLVAMSNTGRVLVFPVSELPELSK-GKGNKIINIS 681


>gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 752

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 381/732 (52%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
 gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1]
          Length = 751

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 247/737 (33%), Positives = 378/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I    E  E G+  +++    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDQI----EINEDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 57  SELGLKNSAKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +LG+ TVD++PN+DG+ +EPV+L AR PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNLGEV   C+ ++ +P   LD L E + GPDFPT   +I  R  +
Sbjct: 176 ATGIAVGMATDIPPHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHEL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRGSI +R V   E +      IV+T +P+QV+ A +LE+IA+ +  K++  + 
Sbjct: 236 IRMYATGRGSIKMRAVYTREGSD-----IVITALPHQVSGARILEQIAQQMNAKKLPMVQ 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VNM  +    +P    L
Sbjct: 291 DLRDESDHENPTRLVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDGRPRVRGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L+K  +R H L GL IA  N+DEV+ IIR   +P   +
Sbjct: 351 YDILSEWLEFRITTVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            +S++Q  AILEL+L  L  L    IR
Sbjct: 408 PRLMER--------------------------FGISDIQAEAILELKLRHLAKLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E   L  E K+   +L S  +L   I +EL +  +     RR+ ++E      M++ + 
Sbjct: 442 GEQAELEKERKDLESVLGSAQKLKNKIVKELEADIERYGDARRSPLIEREEARAMDETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        RA +      +G+  +  D +  +    ++ +V+F 
Sbjct: 502 VGAEPVTVILSQKGWV--------RAAKGHDIDAAGLSYKTGDALLGIAQGKSNQTVIFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L           F       ++   + A+
Sbjct: 554 DSTGRSYTLPAHGLPSARGQGE--------PLIGKLTPPPGASFEALLMGADHDRYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPI 710
             G     KLSD    N++GK  + +    ++L+    +  +   +      G+ + FP+
Sbjct: 606 DAGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDREYVAAVANDGRLLVFPL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
             +   A     G + +
Sbjct: 666 KELPELA--RGKGNQMM 680


>gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
 gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3]
          Length = 749

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 233/760 (30%), Positives = 373/760 (49%), Gaps = 72/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D     GI  +S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDTSSIDD----DGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ++S R  L++GQGN+G+ 
Sbjct: 57  SELGLKSTAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP +L A+ PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV   + ++D P   L  L EII+GPDFPT   +I     I
Sbjct: 176 TTGIAVGMATDIPPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRGS+ +R V  +E        IVV+ +P+Q + + +LE+IA+ ++ K++  +A
Sbjct: 236 AQIYATGRGSLRMRAVWELEHGD-----IVVSALPHQASGSRVLEQIAQQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           DLRDESD +   R+VI  +      + +++ L+  T L+  + VN+  +          +
Sbjct: 291 DLRDESDHENPTRLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDGRPGVRSL 350

Query: 356 G-ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR + V RR  Y L +   R H+L G  +A  N+DEV+ IIR   +P+ A 
Sbjct: 351 DGILNQWLKFRRDTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +S+VQ  AILEL+L  L  L    IR
Sbjct: 410 ----------------------------LMQRFEISDVQAEAILELKLRNLAKLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E +     L S +RL  +IK+EL ++ ++    RR+ +          + + 
Sbjct: 442 GEQDELEKEREWLEKTLGSDARLKTLIKKELTAIAEKYGDDRRSPLASREEARAFSELEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  + + V +S  G++        RA +      + +  +  D         ++   +  
Sbjct: 502 MTADPITVVLSEKGWI--------RAAKGHDMDPATLSYKSGDSFKLAARGRSNQPAVII 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L       +   F       N    + A+
Sbjct: 554 DSTGRAYTLATHNLPSARGQGE--------PLTGRINPPSGAGFDGLMMGDNEQRCLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
             G      L++    NR+GK A+ L +  +++  V        +   +  G+ + FP++
Sbjct: 606 DAGYGFVTTLAELQTKNRAGKAALSLPAGAKVVSPVPINEGAQWVAAVSNEGRLLLFPLA 665

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHAD 745
            +   +     G + I++       + + V++ A++   D
Sbjct: 666 DLPSLS--RGKGNKIIAIPGPRARDREEYVVATAVLKDDD 703



 Score = 54.4 bits (129), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 13/117 (11%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQ  L  S+ G+G  T+  + +  NR+GK   A  +        +V+  P+N+  Q
Sbjct: 594 MGDNEQRCLLASDAGYGFVTTLAELQTKNRAGK--AALSLPAG---AKVVSPVPINEGAQ 648

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEI 902
            +  VS++G L+  P+ ++   SR  KG  I +        ++E VV+   +++ + 
Sbjct: 649 WVAAVSNEGRLLLFPLADLPSLSR-GKGNKIIAIPGPRARDREEYVVATAVLKDDDG 704


>gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48]
 gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48]
          Length = 751

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 379/742 (51%), Gaps = 64/742 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S   +  +G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSDLLDSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP 
Sbjct: 61  DADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ QEP VL AR PN+L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT++P HNL EV   CV ++D P   L+ L E I+GPD+PT   ++  R  I   Y 
Sbjct: 180 VGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TG+GSI +R V  +E        I+VT +P+QV+ A +LE+IA  ++ K++  +ADLRDE
Sbjct: 240 TGKGSIRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD +   R+VI  +     A  ++  L+  T L+S + VN+  +    +P+  +L  +L 
Sbjct: 295 SDHENPCRIVIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDGRPQLKSLRALLL 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A      
Sbjct: 355 EWLEFRIGTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQA------ 408

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                                        L+E+Q   ILE RL +L  L    IR E + 
Sbjct: 409 -----------------------LIARFDLTEIQADYILETRLRQLARLEEMKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVRED 537
           L  E K    +L S ++L  +++ ELL   +     RR+ IVE        + + +  E 
Sbjct: 446 LLKEQKRLTTLLGSDAKLRKLVRSELLEDAETYGDDRRSPIVERAEAKALSENELMPTEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        R  +      +G+  +  D         ++   +   S G 
Sbjct: 506 VTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLIDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP    + +G+ L   L+   G     ++         +    V A+  G  
Sbjct: 558 SYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFECVLL------PEDEALYVVASDAGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPISAIRV 715
              K  D    N++GK  + L +  ++++       +++ +   T  G+ + F ++ +  
Sbjct: 610 FVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASREQDWLAAVTTEGRLLVFKVADLPQ 669

Query: 716 FAGRNSVGVRGISLAKGDQVIS 737
                  G + I +  GD+V S
Sbjct: 670 LG--KGKGNKIIGV-PGDRVAS 688



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 9/169 (5%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD            ++    +      S      S  +           +    
Sbjct: 528 GLSYKAGD---GFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPP 584

Query: 786 SEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  L  +++ +  V S+ G+G      D +  N++GKG+ +            VA 
Sbjct: 585 GATFECVLLPEDEALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVAS 644

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
               + D +  V+ +G L+   V ++    +  KG  I      +RV S
Sbjct: 645 R---EQDWLAAVTTEGRLLVFKVADLPQLGK-GKGNKIIGV-PGDRVAS 688


>gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
          Length = 752

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea
           MMB-1]
 gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1]
          Length = 756

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/754 (31%), Positives = 396/754 (52%), Gaps = 69/754 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           SD    +   ++S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ 
Sbjct: 2   SDLSNFESNETLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K +  LL ++ + TVD+ PN+DG+ +EP VL AR PN+L+NG  GIAVG
Sbjct: 121 AAMRYTESRLSKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATG 244
           MAT++P HNL E+ + CV +++NP  +LD L+E ++GPDFPTG   I  R+ ++  Y  G
Sbjct: 181 MATDVPPHNLREIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYELG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G +  R    IE        IVV E+P+QV+ + +LE++A  ++ K++  + DLRDESD
Sbjct: 241 KGQVKARARYRIEDGE-----IVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT-LIGILKAF 361
            +   R VI  K      + ++  L+  T L+  + VNM  +      +   L   +K +
Sbjct: 296 HENPTRFVIVPKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKGLRAFIKEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR +VV +R ++ L+K  +R H+L GL +A  N+DEV+ IIR    P   + EL++R 
Sbjct: 356 LTFRIDVVRKRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIRNEDKP---KEELIKR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS+ Q  AILEL+L  L  L    I++E + L 
Sbjct: 412 -------------------------FGLSDSQAEAILELKLRHLAKLEEMRIKSEQDELN 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E ++   +L S  +L  +I +E+    ++    RRT ++E        +ED +  + + 
Sbjct: 447 KEREQLEALLGSDRKLKKLITEEIKEAIEDFGDERRTPLIERKEAQAFSEEDLLSNDPVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        RA +      +G+  +  D         T+ +++  +S G  Y
Sbjct: 507 VVLSKQGWI--------RAAKGHDIDVTGLSYKSGDEFLLSAKGRTNQTLVLIASNGRTY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K   LP    + +G+ +   +SL +G  I   +            + + A+  G    
Sbjct: 559 SLKAHTLPSA--RGQGEPITGRISLEKGATIVAAVL------DSEEAHYLLASDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            +L D    N++GK  + L S  E++S       + + +++ +  G+ + F + ++   A
Sbjct: 611 AQLKDLYAKNKAGKATLSLPSNAEVISPVKVESPEGDKVVVVSNEGRMLAFSVKSLPQMA 670

Query: 718 GRNSVGVRGISL------AKGDQVISMAIVLHAD 745
                G + +S+       + + VI+MA +   D
Sbjct: 671 --KGKGNKMLSIPSSRAADREELVIAMATIQSND 702



 Score = 46.3 bits (108), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 24/236 (10%)

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVG----VRGISLAKGDQ 734
            DE  +        +    ++       P++ +    G  R + G    V G+S   GD+
Sbjct: 478 GDERRTPLIER--KEAQAFSEEDLLSNDPVTVVLSKQGWIRAAKGHDIDVTGLSYKSGDE 535

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              +             I       + +                       +      L 
Sbjct: 536 F--LLSAKGRTNQTLVLIASNGRTYSLKAHTLPSARGQGEPITGRISLEKGATIVAAVLD 593

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQ 852
            +E   L  S+ G+G      D    N++GK         +     +++   V   + D+
Sbjct: 594 SEEAHYLLASDAGYGFVAQLKDLYAKNKAGK-----ATLSLPSNAEVISPVKVESPEGDK 648

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEI 902
           +++VS++G ++   V  +   ++  KG  + S        ++E V+++  I+ +++
Sbjct: 649 VVVVSNEGRMLAFSVKSLPQMAK-GKGNKMLSIPSSRAADREELVIAMATIQSNDL 703


>gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 752

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 231/745 (31%), Positives = 381/745 (51%), Gaps = 68/745 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   L+ L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             ++E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGITETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++++EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNSLLRKELQADSDAYGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  I  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATIEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V    + + +L  T+ G+ + FP+ ++   +     G + +
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDENDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKIV 672

Query: 728 SL------AKGDQVISMAIVLHADA 746
           ++         D +  + ++     
Sbjct: 673 NIPSAEAAKGDDSLAHLYVLPPQST 697



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATIEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
                 +V     ++ND ++ ++  G ++  PV+ +   S+  KG  I +         D
Sbjct: 629 HVMP-PVV---IEDENDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIVNIPSAEAAKGD 683

Query: 889 ERVVSVERIRES 900
           + +  +  +   
Sbjct: 684 DSLAHLYVLPPQ 695


>gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
 gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638]
          Length = 752

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/722 (33%), Positives = 375/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI+F M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P+  LD +++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAMTLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFVTTDLEKSYRINLNMIGLNGRPSVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E N L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQNELEKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S  G+V
Sbjct: 451 LASERKMSNLLKKELQADSDAFGDDRRSPLHEREEAKAMNEHDMLPSEPVTIVLSQSGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFIDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ +   L+L  G  +  ++             ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPITGKLTLPPGATVDHML------MEGEEQKLLMASDAGYGFICTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       +ND +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALISLPDNAHVMPPLVIENDNDMLLAITAAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           S+
Sbjct: 673 SI 674



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLSYKAGDSFKSA--VKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++ +EQ +L  S+ G+G   +  D    NR+GK + +   + 
Sbjct: 569 PITGKLTLPPGATVDHMLMEGEEQKLLMASDAGYGFICTFNDLVARNRAGKALISLPDNA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     NDND ++ ++  G ++  PV+++   S+  KG  I S    E
Sbjct: 629 HVMP-PLV---IENDNDMLLAITAAGRMLMFPVSDLPQLSK-GKGNKIISIPSAE 678


>gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163]
 gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163]
          Length = 756

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 376/742 (50%), Gaps = 69/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEMT-------HDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    V +++NP   LD L++ ++GPDFPT   +I  R  +
Sbjct: 173 TTGIAVGMATDIPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEV 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKLYQNGRGSVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + VNM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMRQFSLSETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ S        RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQLQALLASERKLSNLIKKEIQSDAQAYGDDRRSPLHERSESKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D    +    ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAVAKGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPISLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQPLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L+      ++++L+  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAITAAGRMLLFPVS 662

Query: 712 AIRVFAGRNSVGVRGISLAKGD 733
            +   +     G + +S++  D
Sbjct: 663 DLPQLS--KGKGNKIVSISSAD 682



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 63/190 (33%), Gaps = 20/190 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   +  +           I       A   +          
Sbjct: 515 RSAKGHDIDPTGLSYKAGDSFRA--VAKGKSNQPVVFIDSTGRSYALDPISLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK I     + 
Sbjct: 573 PLTGKLTPPPGATIEQVLMAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                AL  +    D++ ++ ++  G ++  PV+++   S+           K  ++VS+
Sbjct: 633 K----ALTPIEIKGDDNLLMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSI 678

Query: 895 ERIRESEIVD 904
                +E  D
Sbjct: 679 SSADFAEGKD 688


>gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b]
 gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b]
          Length = 756

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/752 (32%), Positives = 387/752 (51%), Gaps = 68/752 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ EV    + +I+ P+  LD L++I+ GPDFPT   +I  R  I+  Y  GRG
Sbjct: 182 TDIPPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI  R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SIRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + ++N L+  T L+  + VN+  +    +P    L+ I+  ++ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLLEIISEWLV 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P   +  LM R   
Sbjct: 357 YRRDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEP---KAVLMSR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    +SE Q  AILEL+L  L  L    IR E   L  E
Sbjct: 411 -----------------------FEISETQAEAILELKLRHLAKLEEMKIRGEQAELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +   IL+S  ++  ++K+EL +        RR+ + E        + D +  E + + 
Sbjct: 448 RDQLQAILASDRKMSNLLKKELQADSQTYGDDRRSPLREREEAKALSETDLVSAEPVTIV 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y  
Sbjct: 508 LSQMGWV--------RSAKGHDIDPAGLSYKAGDNYLAAARGKSNQPVAFIDSTGRSYTL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    + +G+ L   L+L  G  +  ++         +   ++ A+  G      
Sbjct: 560 DPTSLPSA--RGQGEPLTGKLTLPPGAVMEQVL------MEPDEQKLLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +D +  NRSGK  + L    +++  +    +++ +L  T+ G+ + FP+  +   +   
Sbjct: 612 FADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAITQAGRMLMFPVGELPQMS--K 669

Query: 721 SVGVRGISL------AKGDQVISMAIVLHADA 746
             G + IS+      A  D+++ + I+    A
Sbjct: 670 GKGNKIISIPSAEAAAGSDKLVWLLILPTGSA 701



 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 71/191 (37%), Gaps = 19/191 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  ++ A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDNYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    ++  EQ +L  S+ G+G   +  D    NRSGK +       
Sbjct: 575 TGKLTLPPGAVMEQVL--MEPDEQKLLMASDAGYGFICTFADLVSRNRSGKALLTL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
             E   ++    VN  D ++L ++  G ++  PV E+   S+  KG  I S       A 
Sbjct: 629 -PENAKVMTPMAVNHEDDMLLAITQAGRMLMFPVGELPQMSK-GKGNKIISIPSAEAAAG 686

Query: 888 DERVVSVERIR 898
            +++V +  + 
Sbjct: 687 SDKLVWLLILP 697


>gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
 gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220]
          Length = 752

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/722 (32%), Positives = 378/722 (52%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P   + ELM R          
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEP---KPELMSR---------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 407 ----------------FGISETQAEAILELKLRHLAKLEEMKIRGEQDELAKERDQLQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  +     RR+ + E      M + D +  E + + +S  G+V
Sbjct: 451 LASERKMNNLLKKELQADAEAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQSGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLSYKAGDSFKSAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MENDDRKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V    + + +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDETDMLLAITTAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLSYKAGDSFKSA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  ++ +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMENDDRKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 +V     ++ D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 629 HVMP-PVV---IEDETDMLLAITTAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568]
 gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568]
          Length = 757

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/758 (32%), Positives = 381/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+ID P   L+ L+E ++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWSKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +    +P+   L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++AFR + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +S+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFGISDTQAEAILELKLRHLAKLEEFKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ I E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAQAYGDDRRSPITERAEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         T+  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSFRSAARGKTNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK+ + L    + L+      E+D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKVMITLPDNAKALAPMEIHGEDDMLLSITAAGRMLFFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      +  D++  + ++  
Sbjct: 663 DLPQLS--KGKGNKIVSIPSAQAASGEDKLAWLFVLPP 698



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 67/192 (34%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPSGLSYKAGDSFRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 575 TGKLTPPPGATIEQVL--MAADDQKLLMASDAGYGFVCTFNDLVARNRAGK---VMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
            N   AL  +    ++D ++ ++  G ++  PV ++   S+  KG  I S       + +
Sbjct: 630 DNAK-ALAPMEIHGEDDMLLSITAAGRMLFFPVADLPQLSK-GKGNKIVSIPSAQAASGE 687

Query: 889 ERVVSVERIRES 900
           +++  +  +   
Sbjct: 688 DKLAWLFVLPPQ 699


>gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 760

 Score =  541 bits (1393), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 14  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 73

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 74  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 132

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 133 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 192

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 193 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 252

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 253 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 307

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 308 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 367

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 368 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 410

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 411 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 458

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 459 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 518

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 519 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 570

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 571 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 622

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 623 NRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 680

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 681 NIPSAEAAKGDD 692



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 519 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 577 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL---- 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 633 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 686


>gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 752

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 753

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/741 (32%), Positives = 372/741 (50%), Gaps = 58/741 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++   +SD+  E+   SVS+   ++  YL YA++ I  RAIPD RDG KPVHRRI+  M 
Sbjct: 3   SDKTPNSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHAMS 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           +MG+++N  + K ARI GEV+GK HPHG+ ++YD+L R+AQ +  R  LI GQGNFG++D
Sbjct: 63  EMGLDFNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGNID 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE R+ + A  +L  + ++ VDFR  Y+    EPVV   ++PN+L NG  G
Sbjct: 123 GDSAAAYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGSSG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNA 240
           IAVGMAT+IP+HN+ E+ +  + +I++P+  L+ L+E I GPDFPTG +I   R  I  +
Sbjct: 183 IAVGMATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIFES 242

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRG   +R    +E        IVV+EIPYQV K+ ++EKIA+L+  KRI  + D+R
Sbjct: 243 YRSGRGGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLEDIR 302

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG-ILK 359
           DES      V+    R    D+++  ++  + L++ F +NM  L+  +  +   +  +LK
Sbjct: 303 DESAEDIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGVLK 362

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++  R EV++RR+ + +     R  VL GL+IA  N+DE++ IIR    P++       
Sbjct: 363 EWLVHRREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSV------ 416

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                     +I                 L+E Q  AIL LRL  L  L    I++EL++
Sbjct: 417 ----------MISR-------------FSLTENQADAILNLRLRSLRKLEEYQIKSELDN 453

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---DED 531
           L +E      +L+S  +    I  E+  VK+          RRT   E L   +    + 
Sbjct: 454 LLLEKDNLNLLLNSEKKQWDQIACEIREVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQA 513

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I +E + V +S  G++        R+ +      S +  ++ D +   F   T   +L 
Sbjct: 514 MIEKEPVTVVISKRGWI--------RSLKGHSIDLSALNFKEGDGLKIAFHAYTTERILL 565

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           FS+ G  Y   V  L  G        L+  ++ NQ                     ++F 
Sbjct: 566 FSTDGRAYTLPVGNLLSGRGHGEAIQLLIDINHNQD--------IMAAFVQDPTCKLLFV 617

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
           +  GN    + S  I   R GK   K+ S D +  V      +++ +  +  + + FPI 
Sbjct: 618 SNKGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIG-DNVAVVGENRKLLIFPID 676

Query: 712 AIRVFAGRNSVGVRGISLAKG 732
            I         GVR  S   G
Sbjct: 677 QIPEMN--RGKGVRLQSYKDG 695


>gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344]
 gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1]
 gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229]
 gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247]
 gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
 gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344]
 gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1]
 gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229]
 gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247]
 gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH]
 gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU]
 gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280]
 gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399]
 gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4]
 gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20]
          Length = 772

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/809 (30%), Positives = 382/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM ++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K  A      +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTLLDLLDAVRDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQRGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSH------LL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++     ++ A+ +G     K+ D +   ++GK  M +D     L+      + + +
Sbjct: 615 HYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGRALEPHVGKRARKGRAPDTRL 762



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D    +    L  +  
Sbjct: 614 LHYYA--APAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668]
 gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668]
          Length = 772

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/809 (30%), Positives = 382/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM ++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K  A      +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTLLDLLDAVRDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSH------LL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++     ++ A+ +G     K+ D +   ++GK  M +D     L+      + + +
Sbjct: 615 HYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGRALEPHVGKRARKGRAPDTRL 762



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D    +    L  +  
Sbjct: 614 LHYYA--APAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b]
 gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a]
 gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98]
 gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14]
 gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91]
 gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210]
 gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC
           13177]
 gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112]
 gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215]
 gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
 gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243]
 gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b]
 gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a]
 gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e]
 gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13]
 gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655]
 gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576]
 gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346]
 gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b]
 gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a]
          Length = 772

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/809 (30%), Positives = 382/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM ++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K  A      +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTLLDLLDAVRDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSH------LL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++     ++ A+ +G     K+ D +   ++GK  M +D     L+      + + +
Sbjct: 615 HYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGRALEPHVGKRARKGRAPDTRL 762



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D    +    L  +  
Sbjct: 614 LHYYA--APAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 756

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 375/742 (50%), Gaps = 69/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEMT-------HDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    V +++NP   LD L++ ++GPDFPT   +I  R  +
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEV 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKLYQNGRGSVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + VNM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMRQFSLSETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQTYGDDRRSPLYERSEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPITLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQPLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L+      ++++L+  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAITAAGRMLLFPVS 662

Query: 712 AIRVFAGRNSVGVRGISLAKGD 733
            +   +     G + +S++  D
Sbjct: 663 DLPQLS--KGKGNKIVSISSAD 682



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK I     + 
Sbjct: 575 TGKLTPPPGATIEQVL--MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                AL  +    D++ ++ ++  G ++  PV+++   S+           K  ++VS+
Sbjct: 633 K----ALAPMEIHGDDNLLMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSI 678

Query: 895 ERIRESEIVD 904
                +E  D
Sbjct: 679 SSADFAEGKD 688


>gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4]
          Length = 772

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/809 (30%), Positives = 384/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S   
Sbjct: 301 LTQEQINTKKTMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAV 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
            ++       ++ A+ +G     K+ D +   ++GK  M +D+    L+      + + +
Sbjct: 621 AEQP------LLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGGALEPHVGKRARKGRAPDTRL 762



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D         L  +  
Sbjct: 614 LHYFA--APAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAA----PLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
 gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1]
          Length = 762

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 229/767 (29%), Positives = 383/767 (49%), Gaps = 71/767 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    +     + + + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDITTPASVIPNEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LI GQGN+GS 
Sbjct: 61  SELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSP 120

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE ++   A+ LL +LG+ TVD++ N+DGS QEPV L AR PN+L+NG
Sbjct: 121 D-DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNG 179

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV   + ++ NPD+ +  L + I  PD PT   +I  +  +
Sbjct: 180 TTGIAVGMATDIPPHNLNEVVRAAIRLLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDL 239

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS  +R V H+++   +   +++  +PYQV+   + E+IA+L+ +K++  + 
Sbjct: 240 QAMYETGRGSYKMRAVYHVDQQEKNL--VIIDALPYQVSGNKVQEQIAKLMMDKKLPWVV 297

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+ DESD +    ++   R    DV  +++ L+  T L+S + VNM  +    KP+   L
Sbjct: 298 DIHDESDHENACRIVLELRSTRVDVARVMSHLFASTDLESSYRVNMNMIGLNGKPQVKNL 357

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ ++  R +VV RR ++ L+K   R H+L GL IA  N+DEV+RIIR   +P+   
Sbjct: 358 KEVLEEWLISRRQVVTRRVQFRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKQ-- 415

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                         G   LS++Q  AIL++RL +L  L   ++R
Sbjct: 416 ---------------------------ELMGKYDLSDIQANAILDIRLRQLARLEEIELR 448

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E     ++L +   L  ++ +EL +   E    R + +VE       ++ D 
Sbjct: 449 SEKDALEAERATLQELLDNPESLTQLMIEELEADMKEHGNDRMSSVVEREEATALKESDL 508

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E +   +S  G++        RA +       G+  R  D         ++  +   
Sbjct: 509 VPSEPITAVLSKAGWI--------RAAKGHDVDAKGMSYRSGDSYQAHVHSKSNEKIYIM 560

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   L     Q           L    +      F +  +  ++  ++ A+
Sbjct: 561 DSTGRSYSIEAHTLASARGQGD--------PLTSVLKPPAGASFEQLLAGADDQRIILAS 612

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-------------DILLT 699
             G    N L +     ++GK  +  D+  ++L+V T  + +              I + 
Sbjct: 613 SQGYGFINTLGNLETNQKAGKNVINFDADAKLLTVATIDKTDSETPDDAQALTQNQIAVV 672

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           T  G  + F +  +         G + I+L  G++V+++  +   D+
Sbjct: 673 TSAGYLLIFGVDELPEQQ--RGKGNKLINLKAGEEVLAVIALNSHDS 717



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 67/203 (33%), Gaps = 23/203 (11%)

Query: 709 PISAIRVFAG--RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           PI+A+   AG  R + G     +G+S   GD     A V     +    +       +  
Sbjct: 513 PITAVLSKAGWIRAAKGHDVDAKGMSYRSGDS--YQAHVHSKSNEKIYIMDSTGRSYSIE 570

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                  +          +Q I+  S +G+G   +  +   + +
Sbjct: 571 AHTLASARGQGDPLTSVLKPPAGASFEQLLAGADDQRIILASSQGYGFINTLGNLETNQK 630

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDND-----------QIILVSDKGTLIRVPVNEIR 871
           +GK +   D          VA     D++           QI +V+  G L+   V+E+ 
Sbjct: 631 AGKNVINFDADAKLLT---VATIDKTDSETPDDAQALTQNQIAVVTSAGYLLIFGVDELP 687

Query: 872 IASRATKGVVIFSTAKDERVVSV 894
              R  KG  + +    E V++V
Sbjct: 688 EQQRG-KGNKLINLKAGEEVLAV 709


>gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
 gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546]
          Length = 760

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 244/805 (30%), Positives = 402/805 (49%), Gaps = 68/805 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M  ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E       +IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKE-----GNEIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D ++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 IEFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLELLLGSERRLNTLLKKEIKADAEKYGDDRRSPMVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +        +  +  D         ++   +F  + G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAGSLNYKSGDNYLAHSRGKSNQQAVFLGNDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNIAAGTNIRHVVMGEEEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  NRSGK  + L    E+L  +     + ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEILAITNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++      + ++ +S  I L   +         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKEREEFVSHLIALPQQSSVTLYAGKRKLGLKPSDLENFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKE 797
                       ++    +    +E
Sbjct: 729 RRGGLLPRGLQRVTRIEIENGAAEE 753



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 20/183 (10%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE---- 782
           I  AKG  V + ++   +  +Y        +  A      G +  + S    S+      
Sbjct: 515 IRHAKGHDVDAGSLNYKSGDNYLAHSRGKSNQQAVFLGNDGRSYSLESHSLPSARSQGEP 574

Query: 783 -------GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                     +  R   +  +EQ  L  S+ G+G      D    NRSGK   A      
Sbjct: 575 ITGRLNIAAGTNIRHVVMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGK---ALVTLPQ 631

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDER 890
           N    L       +ND+I+ ++++G ++  P+ ++    +  KG  I +       + E 
Sbjct: 632 NSEVLLPKAVGNLENDEILAITNQGRMLLFPIKDLPQLGK-GKGNKIINIPAAKAKEREE 690

Query: 891 VVS 893
            VS
Sbjct: 691 FVS 693


>gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
 gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326]
          Length = 760

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/755 (32%), Positives = 399/755 (52%), Gaps = 68/755 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  V +IDNP  +L  +M  ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D ++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 IEFRRSTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++E+Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEKLLGSERRLNTLLKKEIQADAEKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +FF S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAEGLSYKSGDKYLAHARGKSNQQAVFFGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++  G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNITAGSAIRQVIMGEEEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  NRSGK  + L +  E++  +T      ++I+  T  G+ + FPI  +   A
Sbjct: 611 CKGSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIVAITNQGRMLLFPIKDLPQLA 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADAD 747
                G + I++      + ++++S  I +  DA 
Sbjct: 671 --KGKGNKIINIPAAKAKEREEILSHLIAVPKDAT 703



 Score = 45.9 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  +EQ  L  S+ G+G      D    NRSGK +     +        +A  
Sbjct: 585 SAIRQVIMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPANSEVMEPKTIADL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E ++S
Sbjct: 645 ---DSDEIVAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEILS 693


>gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 756

 Score =  540 bits (1392), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/742 (32%), Positives = 374/742 (50%), Gaps = 69/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEMT-------HDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    V +++NP   LD L++ ++GPDFPT   +I  R  +
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEV 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKLYQNGRGSVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + VNM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMRQFSLSETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQAYGDERRSPLHERGEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPAGLSYKAGDSFRAAAKGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPITLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQPLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    +  +      ++++L+  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAITAAGRMLLFPVS 662

Query: 712 AIRVFAGRNSVGVRGISLAKGD 733
            +   +     G + +S++  D
Sbjct: 663 DLPQLS--KGKGNKIVSISSAD 682



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 79/241 (32%), Gaps = 24/241 (9%)

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV--- 724
           +    A      DE  S      E      ++       P++ +    G  R++ G    
Sbjct: 466 KKEIQADAQAYGDERRSPLHERGEA--KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDID 523

Query: 725 -RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             G+S   GD   + A                 +      L S   +        +   G
Sbjct: 524 PAGLSYKAGDSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPG 583

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E+    +   +Q +L  S+ G+G   +  D    NR+GK I     +      A   
Sbjct: 584 ATIEQVL--MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAK----AFAP 637

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +    D++ ++ ++  G ++  PV+++   S+           K  ++VS+     +E  
Sbjct: 638 IEIKGDDNLLMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSISSADFAEGK 687

Query: 904 D 904
           D
Sbjct: 688 D 688


>gi|26554099|ref|NP_758033.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
 gi|26454107|dbj|BAC44437.1| DNA topoisomerase IV subunit A [Mycoplasma penetrans HF-2]
          Length = 1481

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 232/729 (31%), Positives = 374/729 (51%), Gaps = 41/729 (5%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I + S+ D M  S+  YA  +I  RA+PD+RDGLKPV RRIL  M ++ +  +K Y
Sbjct: 4   QNDKIWNRSLDDIMSESFGKYAKYIIQDRALPDVRDGLKPVQRRILHAMNELKIHHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+Q+W   L L++ QGN GS+DGD PAA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQEWKNNLPLLDMQGNKGSIDGDSPAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    +L D+ K+TV F  N+D S QEP VL +  PN+L+NG  GIA G ATNIP
Sbjct: 124 ECRLSKFGQTILKDIDKNTVKFINNFDDSEQEPTVLPSLLPNILINGATGIAAGYATNIP 183

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             N  EV+DG +  I  P+  L  L +II+GPDFPTG +I G+  I+  Y TG+G   IR
Sbjct: 184 PFNPSEVIDGTIYRILRPESSLAELAKIIKGPDFPTGGIIQGKEFIQEIYKTGKGKFFIR 243

Query: 252 GVSHIEKTS--GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                E T    + ++++V EIPY  NK+A+++ + E+     +    ++RD+SD+ G  
Sbjct: 244 AKIEEEPTKSTKNVKRLIVKEIPYDTNKSAIVKSLDEIKYNNELPGFKEVRDDSDKNGIS 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +V+E       ++I   LY+ T LQ  ++ NMV +   KP +  L+ IL +F+     VV
Sbjct: 304 IVLEFDTEKDLEIIKTFLYKKTQLQISYNANMVLIKDRKPVQAGLLEILDSFIEHANNVV 363

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           ++  +Y L K+  R  ++ GL  A++ +D +V +I+ S + E A+               
Sbjct: 364 IKAAQYDLEKSLLRKEIIEGLIKAISEIDVLVNLIKSSVSKEEAK--------------- 408

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      +       ++E Q+ AI+ LRL  LT    + ++ E   L   IKE   
Sbjct: 409 -----------LKIQDYFKVNERQSEAIVNLRLYVLTSFDTEKLKKEYEELLEFIKEKEL 457

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM--VVTVSHLGY 547
           I++S       I   L + K      RR+ I   + ++E E   + E+      V+   Y
Sbjct: 458 IINSVPYRNKFIVSILENHKKSFGYKRRSLIENEVEELEIETVDIVEERNGTCIVTRDNY 517

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K +               S   ++D D   D+F +ST   ++  ++ G +     +++ 
Sbjct: 518 IKFIDDVS-----IEELDLSKAKIKDADIPVDIFRLSTLDHLVCLTNRGKMITIPAYKIK 572

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF-I 666
           +   +  G  +  +++++  E+        +      N  ++ ATK+  ++R  L D  +
Sbjct: 573 MTKLKDNGVHINELITIDSFEKTILAFGVSKYSDI--NTEILVATKNSLIKRISLEDINL 630

Query: 667 QINRSGKIAMKLDSR-DEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             N      + L    D+++S     +E ++++  T+ G   R+ I  I    GR + GV
Sbjct: 631 SKNAKSSTYVSLKGGNDDVVSAYILKKEYSEVVSVTQNGYATRYKIDEI-PLVGRTAAGV 689

Query: 725 RGISLAKGD 733
           + +SL   D
Sbjct: 690 KNMSLKDKD 698



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 96/241 (39%), Gaps = 14/241 (5%)

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              T+   ++        +++ S     K+   D  + +   +  + ++  T  G+ +  
Sbjct: 510 CIVTRDNYIKFIDDVSIEELDLSKA---KIKDADIPVDIFRLSTLDHLVCLTNRGKMITI 566

Query: 709 PISAIRVFAGRNSVGV---RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRL 764
           P   I+        GV     I++   ++ +++  +  ++D + +  +     +  +  L
Sbjct: 567 PAYKIK-MTKLKDNGVHINELITIDSFEKTILAFGVSKYSDINTEILVATKNSLIKRISL 625

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKE-QFILTVSEKGFGKRTSSYDFRISNRS 823
              +  +        S++G   +     +  KE   +++V++ G+  R    +  +  R+
Sbjct: 626 EDINLSKNAKSSTYVSLKGGNDDVVSAYILKKEYSEVVSVTQNGYATRYKIDEIPLVGRT 685

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             G++   +   +    +    P+  ++  +  +S++G   R+ +N+I + SR+  G  I
Sbjct: 686 AAGVKNMSLKDKDL---MAFTVPIPKHENFLFFISNRG-AKRIHINDIVVTSRSKLGKRI 741

Query: 883 F 883
           F
Sbjct: 742 F 742



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           E  I      +       IL  ++    KR S  D  +S  +     +T VS       +
Sbjct: 593 EKTILAFGVSKYSDINTEILVATKNSLIKRISLEDINLSKNAKS---STYVSLKGGNDDV 649

Query: 842 VAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           V+ + +  +  +++ V+  G   R  ++EI +  R   GV   S    + +     I + 
Sbjct: 650 VSAYILKKEYSEVVSVTQNGYATRYKIDEIPLVGRTAAGVKNMSLKDKDLMAFTVPIPKH 709

Query: 901 EI 902
           E 
Sbjct: 710 EN 711


>gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
 gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13]
          Length = 757

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/738 (32%), Positives = 372/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+ID P   L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAIWKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +    +P+   L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++AFR + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +S+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFGISDTQAEAILELKLRHLAKLEEFKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E      +L+S  +L  +IK+E+ +        RR+ I E      M + D 
Sbjct: 439 GEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAYGDDRRSPITERAEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      SG+  +  D         T+  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDSYRSAARGKTNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L+      ++D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAMITLPDNAKALAPMEIHGDDDMLLSITAAGRMLLFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 DLPQLS--KGKGNKIVSI 678



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 20/190 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPSGLSYKAGDSYRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 575 TGKLTPPPGATIEQVL--MAADDQKLLMASDAGYGFVCTFNDLVARNRAGK---AMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N   AL  +    D+D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 630 DNAK-ALAPMEIHGDDDMLLSITAAGRMLLFPVADLPQLSK----------GKGNKIVSI 678

Query: 895 ERIRESEIVD 904
              + +   D
Sbjct: 679 PAAQAASGED 688


>gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450]
          Length = 756

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 393/745 (52%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  + +IDNP  +L  +M  ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E        IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGGD-----IVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D ++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 IEFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E   L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQEELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  ++K+E+ +  ++    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEQLLGSERRLNTLLKKEIKADAEKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSDKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++N G  I  ++   ED+        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNINAGTNIRHVVMGEEDQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  NRSGK  + L    E+++ +T +    ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEILAITNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      + ++++S
Sbjct: 671 --KGKGNKIINIPAAKAKEREEMVS 693



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAV 844
           +  R   +  ++Q  L  S+ G+G      D    NRSGK +      S++     +  +
Sbjct: 585 TNIRHVVMGEEDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVMTPDTISNL 644

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
               DND+I+ ++++G ++  P+ ++    +  KG  I +       + E +VS
Sbjct: 645 ----DNDEILAITNQGRMLLFPIKDLPQLGK-GKGNKIINIPAAKAKEREEMVS 693


>gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9]
 gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan
           9]
          Length = 772

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/809 (30%), Positives = 382/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM ++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K  A      +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTLLDLLDAVRDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSH------LL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++     ++ A+ +G     K+ D +   ++GK  M +D     L+      + + +
Sbjct: 615 HYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKEALVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGRALEPHVGKRARKGRAPDTRL 762



 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D    +    L  +  
Sbjct: 614 LHYYA--APAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKEALV 713


>gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
 gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9]
          Length = 768

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 255/758 (33%), Positives = 369/758 (48%), Gaps = 71/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M +  +  D E      SV +      +YL YA +V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MEDTELELDFESNSQ-ESVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+SLR  LI+GQGNFGS 
Sbjct: 60  DRMGLRAGVKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LLD+LG+ TV+F PNYDG   EP +L AR P +L+NG  
Sbjct: 120 DGDGAAAMRYTEARLSPIAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMAT IP+HNLGEV + C+A+I NP+I  D L +I+ GPD+ +GA I+ +   +K 
Sbjct: 180 GIAVGMATEIPSHNLGEVANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQ 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+G++ +R     E+ +  + Q+VVTE+P   +   +LE+I EL   K       L
Sbjct: 240 IYETGKGTVKVRARWEFEELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSL 299

Query: 300 RDE-------------------SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
             E                         R+V E K      +  +N L  +TS++   S+
Sbjct: 300 NSEQQNTKSMMLGLLDAVRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSI 359

Query: 340 NMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    KP +  L  IL  +V FR E V+ RTKY L +  DR HVL G  I + N+D
Sbjct: 360 NLVCIGIDGKPRQRNLKEILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVD 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+  IR S  P+ A                                   LS+ Q   IL
Sbjct: 420 EVISTIRNSDEPKPA-----------------------------LIEKFNLSDRQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E++L +L  L    I+ EL    +E K+  ++L+S S L   I +E+ S   +    RRT
Sbjct: 451 EMKLRQLAKLEGIKIQQELEDKRLEQKKLENLLNSNSSLKKQIIKEIESDAKKYADARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I         E  +V E + V +S  G+V        RA++  G   S +  +  D + 
Sbjct: 511 LIK-HAEKATLEVKVVDEPVTVIISDKGWV--------RARQGHGVEESALNFKSGDSLY 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             F V T  +++   S G VY   V  LP       G+    ++ L    +I+  +   E
Sbjct: 562 GTFEVRTVDNLIGIGSNGRVYTVPVSSLPSARGD--GQPYSAMIDLESKTQISHYVCAKE 619

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDIL 697
           D         +    +G        D +   ++GK  + ++    +L      +    I 
Sbjct: 620 DSVW------LLMQDNGLGFVTTFKDMVSRIKAGKSFISMEEGANLLRPIPVGSSARYIG 673

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           + +K  + +  PI  I+        G   + L   D++
Sbjct: 674 MLSKNDRFLIVPIQDIKHLNS-GGRGTILMGLDPKDKI 710


>gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
 gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886]
          Length = 759

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 245/739 (33%), Positives = 388/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDITY-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD++PN+DG+ +EP  L +R P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  VA+ID+P +DLD L+E ++GPD+PT   +I  +  +
Sbjct: 173 VTGIAVGMATDIPPHNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVEL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y  GRGSI +R   H +        IV+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 KKLYRDGRGSIKMRARWHKDNGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VN+  +    +P+   L
Sbjct: 288 DLRDESDHENPTRIVIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDGRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR E V RR +Y L+K   R H+L GL +A  N+DEV+ IIR    P   +
Sbjct: 348 LKILTEWLEFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
           +ELM R                            LSE Q  AILE++L +L  L    IR
Sbjct: 405 KELMSR--------------------------FGLSEKQAEAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E ++   +L S  R+  ++K+E+L+  ++    RR+ +VE      M + D 
Sbjct: 439 GEQDELNKEREQLEKVLGSERRMNTLLKKEILADAEKYGDERRSPLVERAEAKAMTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      + +  +  D         ++  V+F 
Sbjct: 499 IPSEPITVVLSEKGWI--------RHAKGHDVDPTSLSYKSGDSYLASARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L++  G                N+  V+ A+
Sbjct: 551 GSDGRSYALESHTLPSA--RSQGEPITGRLNITAGT------AVRHVMMGENDNLVLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K  D +  NRSGK  + L    E++  +       +DI+  T  G+ + FP+
Sbjct: 603 DAGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVAITNEGRMLVFPV 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KELPQLG--KGKGNKIINI 679



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAV 844
           +  R   +   +  +L  S+ G+G      D    NRSGK + +    +++     +  +
Sbjct: 584 TAVRHVMMGENDNLVLMASDAGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADI 643

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
               + D I+ ++++G ++  PV E+    +  KG  I +
Sbjct: 644 ----ETDDIVAITNEGRMLVFPVKELPQLGK-GKGNKIIN 678


>gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 752

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I+ R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 629 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
 gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256]
          Length = 777

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 232/755 (30%), Positives = 368/755 (48%), Gaps = 68/755 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M          E            +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 12  MASTTDDLPPSESGTSIDTPFDSALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAM 71

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             M ++ ++ Y K AR+ G+V+GK+HPHG+ A+YDA+ R+AQD+SLR  L++GQGNFG++
Sbjct: 72  RAMRLDPSQGYKKSARVVGDVIGKFHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNI 131

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL + A  L+  L + TVDFRP Y+G  +EP ++   +PN+L NG  
Sbjct: 132 DGDNAAAYRYTEARLTRVAVDLMQGLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGAS 191

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKN 239
           GIAVGMATNIP HN  EV+D  + +IDNP   L  L++ ++GPDFPTG ++      I  
Sbjct: 192 GIAVGMATNIPPHNAAEVIDAALLLIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQ 251

Query: 240 AYATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           AY +GRGS  +R                 IEK SG   Q+V++EIPY V K  ++E++A+
Sbjct: 252 AYESGRGSFRVRARFSIGKDADGKWEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQ 311

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN- 345
           L+ ++++  + D+RDES      V++   R   A+V+ + LYR T L+S F++N+  L+ 
Sbjct: 312 LIADRKLPILEDVRDESAEDLRIVLVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDA 371

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P+   L  +L  ++  +  V+VRR ++ + K  DR  ++ G  IA  NLD ++ IIR
Sbjct: 372 TRTPKVMGLKQLLTEWLQHQIIVLVRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIR 431

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               P+                                     L++ Q  AIL +RL  L
Sbjct: 432 TEDEPK-----------------------------PVMIAEFELTDRQAEAILNMRLRSL 462

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI 520
             L   +++ E   L  E +E   ++ S +R    ++++L  ++           RRT I
Sbjct: 463 RKLEEMELKREQTDLTAEREELAKLVESPARQRTRLRKDLERLRGVYGLDTSLGARRTTI 522

Query: 521 VEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            E     E   +  I +E + V +S  G+++       R      +       ++ D + 
Sbjct: 523 AEAAPTREIPLDAMIEKEPVTVILSKRGWIRAQ-----RGHVAPDQW-GEFKFKEGDELL 576

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   +L  +S G  +     +LP G     G+ L  ++ ++   RI  ++P   
Sbjct: 577 FAAHAQTTDKLLIAASDGRFFTVGADKLPGGRGF--GEPLRLMVDIDPDARIVAMVPASA 634

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-IL 697
                    ++ A+  G+       D     R G+  + L  R  ++        +D + 
Sbjct: 635 GGR------LLLASTSGHGFIVNTDDVTAETRKGRNVVNLKPRAALVVARPIAPGDDSVA 688

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +     + V FP++ + V  GR   GV       G
Sbjct: 689 VVGDNRKLVVFPLAEVPVM-GRG-QGVMLQRYRDG 721



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 47/172 (27%), Gaps = 12/172 (6%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
               +GD+++  A       D                                      +
Sbjct: 567 FKFKEGDELLFAA--HAQTTDKLLIAASDGRFFTVGADKLPGGRGFGEPLRLMVDIDPDA 624

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                        +L  S  G G   ++ D     R G+ +            ALV   P
Sbjct: 625 RIVAMVPASAGGRLLLASTSGHGFIVNTDDVTAETRKGRNVVNLK-----PRAALVVARP 679

Query: 847 VNDNDQ-IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD---ERVVSV 894
           +   D  + +V D   L+  P+ E+ +  R  +GV++         + V  V
Sbjct: 680 IAPGDDSVAVVGDNRKLVVFPLAEVPVMGR-GQGVMLQRYRDGGLSDAVSFV 730


>gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7]
 gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7]
          Length = 754

 Score =  540 bits (1391), Expect = e-151,   Method: Composition-based stats.
 Identities = 236/747 (31%), Positives = 378/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 QKVYETGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L++ + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P   +
Sbjct: 351 RQLLSEWLQYRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSEVQ   IL+ RL +L  L    IR
Sbjct: 408 AVLMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E K    +L S ++L  ++++EL+   +     RR+ IV         + + 
Sbjct: 442 GEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLPAHSLPSA--RGQGEPLSGRLTPPPGASFECVLL------PDDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +   +++        ++ +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQDWLAAVTTEGRLLLFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 34/182 (18%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD            ++           S      S  +     
Sbjct: 518 RCAKGHDIDAAGLSYKAGD---GFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQG 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L   +  +  + S+ G+G      D +  N++GK + +    
Sbjct: 575 EPLSGRLTPPPGASFECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSL--- 631

Query: 834 KINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                 A+VA  PV D   D +  V+ +G L+   V+++    +  KG  I      ERV
Sbjct: 632 --PNGAAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLGK-GKGNKIIGI-PGERV 687

Query: 892 VS 893
            S
Sbjct: 688 AS 689


>gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath]
 gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str.
           Bath]
          Length = 744

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/733 (32%), Positives = 360/733 (49%), Gaps = 63/733 (8%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            E      + + D  + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++G+    K
Sbjct: 2   NEVANYERIPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSK 61

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
             K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA 
Sbjct: 62  PKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPD-DPKSFAAM 120

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL   A  LL +L   TVD+ PN+DG+ +EP +L AR PN+L+NG  GIAVGMAT
Sbjct: 121 RYTEARLTPYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMAT 180

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGS 247
           +IP HNL EVV+ C+ +ID P+  ++ L   IRGPDFP    +I  R  +   Y TG G+
Sbjct: 181 DIPPHNLREVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGA 240

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           + +R    +E  +     IVVT +PYQV+ A ++E+IA  ++ K++  + DLRDESD + 
Sbjct: 241 VRLRARYELEDGN-----IVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHEN 295

Query: 308 -YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAF 364
             R+VI  K      + +++ L+  T L+  + VN+  +    +P+   L  IL  +++F
Sbjct: 296 PTRLVIMPKSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNGRPQVKNLREILTEWLSF 355

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R E V RR ++ L+K   R H+L GL +A  ++DEV+ IIR    P+             
Sbjct: 356 RTETVRRRLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPK------------- 402

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+++Q  AILELRL  L  L    IR E  +L  E 
Sbjct: 403 ----------------PVLMTRFGLTDLQAEAILELRLRHLARLEEIKIRGEQEALEQER 446

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTV 542
                 L SR+ L  +IKQEL    ++    RR+ IV        +    I  E + V +
Sbjct: 447 ARLERTLGSRAELDALIKQELRQDAEKFGDARRSPIVARQASQALDTTALIASEPVTVVL 506

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++        R+ +      + +  R  D      +  +     F  S G  Y   
Sbjct: 507 SEKGWI--------RSAKGHEVDPATLSYRAGDGFLCAALGRSTQPAYFLDSTGRSYSLA 558

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP    + +G+ L   L+   G     ++   E++        + AT  G     +L
Sbjct: 559 VHDLPSA--RGQGEPLTGRLNPPPGAIFVAVLAGSEEDWY------LLATDGGYGFLVQL 610

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +    NRSGK  + +    +++          + +   +  G+ + +P   I       
Sbjct: 611 GELGSKNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGRLLVYPAEEIPRLN--K 668

Query: 721 SVGVRGISLAKGD 733
             G + I +   D
Sbjct: 669 GKGSKLIQIPPAD 681


>gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu]
          Length = 712

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 250/762 (32%), Positives = 378/762 (49%), Gaps = 77/762 (10%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD      +T   + +  + +YL+YA++V+ GRA+PD+ DG KPV RRI
Sbjct: 1   MDDNTPDLFTGSDAPAGDALT---LGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP +L  R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I +P +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDA 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY +GRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EISTAYESGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  +TSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR S  P+ A                                   LSE Q 
Sbjct: 418 LNIDEVIRIIRESDEPKAA-----------------------------LMSAFGLSERQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL++L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLANESAMKRLMIKEIEADAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFSFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G  +    
Sbjct: 560 DSLYAAFQCRTPDRLIAWGSRGRVYSVDVAVLPGGRGD--GVPVTSLIELESGTHLMHYF 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
                  +  +  ++ A+ +G     K+ D +   ++GK  M +D     L+        
Sbjct: 618 A------ASADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDEGAAPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
             +   +  G+ + F +  ++  +G    GV  ++L   + +
Sbjct: 672 KQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETL 712



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 6/166 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G S   GD + +       D           +      L  G  + +          G  
Sbjct: 553 GFSFKAGDSLYAAFQCRTPDRLIAWGSRGRVYSVDVAVLPGGRGDGVPVTSLIELESGTH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 613 LMHYFA--ASADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTID----EGAAPLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +
Sbjct: 667 VLPNAKQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETL 712


>gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 749

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 380/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 3   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 62

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 63  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 121

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 122 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 181

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 182 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 242 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 296

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 297 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 356

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 357 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 399

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 400 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 448 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 508 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 559

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 560 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 611

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 612 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 669

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 670 NIPSAEAAKGDD 681



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 508 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 565

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 566 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 621

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 622 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 675


>gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 754

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/739 (33%), Positives = 388/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDMTM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    V +IDNP  DLDALME ++GPD+PT   +I  +  +
Sbjct: 173 VTGIAVGMATDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAEL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y TGRGSI +R V H E        IV+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 KKVYRTGRGSIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      + ++N L+  T L+  F VN+  L    +P+   L
Sbjct: 288 DLRDESDHENPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ +R   V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   +
Sbjct: 348 VSIISEWLEYRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L+ +Q  AILE++L +L  L    IR
Sbjct: 405 AELMSR--------------------------FDLTAIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E +    +L S  RL  +IK+ELL+  +     RR+ +VE        + D 
Sbjct: 439 GEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDDRRSPMVERAEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      S +  +  D         ++   +F 
Sbjct: 499 IPSEPITVVLSEKGWI--------RHAKGHEVDPSTLSYKSGDSYLAHARGKSNQPAIFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  +  +M   +++        + A+
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPITGRLNLTPGSNMRQVMMAEDEQLW------LMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K SD +  N+SGK  + L    ++++ +       + IL  T  G+ + FPI
Sbjct: 603 DAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 43.2 bits (100), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  
Sbjct: 584 SNMRQVMMAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTL-----PENAQVMAPQ 638

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            + D  +DQI+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 639 EIRDIEHDQILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum
           SCRI1043]
 gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043]
          Length = 756

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 374/742 (50%), Gaps = 69/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G  S+++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEMT-------HDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    V +++NP   LD L++ ++GPDFPT   +I  R  +
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEV 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKLYQNGRGSVRMRAVWKKEDGD-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + VNM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILSEWLVFRRDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMRQFSLSETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E   L  E  +   +L+S  +L  +IK+E+ S        RR+ + E      M + D 
Sbjct: 439 GEQGDLAKERDQLQALLASERKLSNLIKKEIQSDAQAYGDDRRSPLHERGEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPTGLSYKAGDSFRAAAKGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      +P    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPISMPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQPLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L+      E+++L+  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAITAAGRMLLFPVS 662

Query: 712 AIRVFAGRNSVGVRGISLAKGD 733
            +   +     G + +S++  D
Sbjct: 663 DLPQLS--KGKGNKIVSISSAD 682



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A                 +      + S   +    
Sbjct: 515 RSAKGHDIDPTGLSYKAGDSFRAAAKGKSNQPVVFIDSTGRSYALDPISMPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK I     + 
Sbjct: 575 TGKLTPPPGATIEQVL--MAADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                AL  +    +++ ++ ++  G ++  PV+++   S+           K  ++VS+
Sbjct: 633 K----ALAPIEIKGEDNLLMAITAAGRMLLFPVSDLPQLSK----------GKGNKIVSI 678

Query: 895 ERIRESEIVD 904
                SE  D
Sbjct: 679 SSADFSEGKD 688


>gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
 gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1]
          Length = 758

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 385/732 (52%), Gaps = 63/732 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEMSFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL ++G+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATG 244
           MAT+IP HN+ E+ D  + +IDNP  DL  +M+ ++GPD+PT A I+  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D ++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR E V +R +Y L+K   R H+L GL +A  NLDEV+ IIR    P   +  LM+R 
Sbjct: 356 IQFRRETVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E   L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQEELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E ++   +L S  R+  ++K+E+ +  ++    RR+ IVE      M + D +  E + 
Sbjct: 447 KEREKLEKLLGSERRMNTLLKKEIQADAEKYGDDRRSPIVERAEAKAMTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +      S +  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDASSLNYKAGDKYLASARGKSNQPAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L++N G          +      +   +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNINAGT------NIRQVVMGEESQLWLVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  NRSGK  + L    E+++         ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEILAITNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL 729
                G + I++
Sbjct: 671 --KGKGNKIINI 680



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +  + Q  L  S+ G+G      D    NRSGK +            +++   
Sbjct: 585 TNIRQVVMGEESQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDL 644

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              ++D+I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 645 ---ESDEILAITNQGRMLLFPIKDLPQLGK-GKGNKIIN 679


>gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
 gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71]
          Length = 749

 Score =  540 bits (1390), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/760 (31%), Positives = 369/760 (48%), Gaps = 72/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE     D     GI  +S+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTETNTIDD----DGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 57  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +LG+ TVD+ PN+DG+ +EP +L A+ PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV   V ++D P   L  L EII+GPD+PT   +I  R  I
Sbjct: 176 TTGIAVGMATDIPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              YATGRG + +R V   E        IVVT +P+Q + + +LE+IA+ ++ K++  +A
Sbjct: 236 AQIYATGRGGLRMRAVWDTEHGD-----IVVTALPHQASGSRVLEQIAQQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           DLRDESD +   R+VI  +      D +++ L+  T L+  + VN+  +          +
Sbjct: 291 DLRDESDHENPTRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDGRPGVRSL 350

Query: 356 G-ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             ILK ++ FR E V RR  Y L + + R H+L G   A  N+DEV+ IIR   +P+ A 
Sbjct: 351 DGILKQWLKFRRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS++Q  AILEL+L  L  L    IR
Sbjct: 410 ----------------------------LIARFELSDIQAEAILELKLRNLAKLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E       L S +RL  +IK+EL ++ ++    RR+ +          + + 
Sbjct: 442 GEQDELEKERDWLEKTLGSEARLKTLIKKELTAIAEKYGDDRRSPLASREEAQAFSELEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  + + V +S  G++        RA +      + +  +  D         ++   +  
Sbjct: 502 MTADPITVVLSEKGWI--------RAAKGHDMDPASLSYKSGDSFKLAARGRSNQPAVII 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L       +   F       +    + ++
Sbjct: 554 DSTGRAYTLATHNLPSARGQGE--------PLTGRINPPSGAGFDGLMMGDSGQRCLLSS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPIS 711
             G      L +    NR+GK A+ L +   ++           +   +  G+ + FP++
Sbjct: 606 DAGYGFITTLGELQTKNRAGKAALTLPAGARVVSPAPIGEDAQWVAAVSNEGRLLLFPLA 665

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHAD 745
            +   +     G + I++       + + +I+ A++   D
Sbjct: 666 DLPSLS--RGKGNKIIAIPGPRARDREEFMIATAVLREND 703



 Score = 45.6 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 13/117 (11%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q  L  S+ G+G  T+  + +  NR+GK               +V+  P+ ++ Q
Sbjct: 594 MGDSGQRCLLSSDAGYGFITTLGELQTKNRAGKAALTLPAGAR-----VVSPAPIGEDAQ 648

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEI 902
            +  VS++G L+  P+ ++   SR  KG  I +        ++E +++   +RE++ 
Sbjct: 649 WVAAVSNEGRLLLFPLADLPSLSR-GKGNKIIAIPGPRARDREEFMIATAVLRENDG 704


>gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
 gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968]
 gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150]
          Length = 753

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/742 (33%), Positives = 372/742 (50%), Gaps = 69/742 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+
Sbjct: 15  LAEFTEKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGD 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG++A Y+A+  MAQ +S R   ++GQGN+GS D DP   AA RYTE RL + 
Sbjct: 75  VLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSRY 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMA++I  HNL EV
Sbjct: 134 AEVLLAELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVGMASDILPHNLTEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            + CV ++DNP  DL A+ + I+GPDFPT   +I     I   Y TG GSI +R V + E
Sbjct: 194 ANACVYLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETGNGSIKMRAVYNQE 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIELKR 316
           K     + IV+T +PYQV+ A +LE+IA  +++K++  + DLRDESD     R+VI  + 
Sbjct: 254 K-----QNIVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIVPRS 308

Query: 317 GA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
                + +++ L+  T L+  + VN   +    KP    L+ I+  ++ +R  VV RR +
Sbjct: 309 NRVDIEGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLVEIISEWLVYRISVVRRRLE 368

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           Y L K  DR HVL GL IA  N+DEV+ IIR    P+                       
Sbjct: 369 YRLAKVLDRIHVLEGLLIAYLNIDEVIAIIREHEQPKQ---------------------- 406

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                  G      +S+ Q  AILE++L  L  L    +R EL+ L +E      IL+S 
Sbjct: 407 -------GLIARFNISDRQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILASE 459

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVP 552
            RL  ++K+E+ + +DE    RR+ I+        ++ED +  E + V +S  G+V    
Sbjct: 460 QRLKKLVKEEITNDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKGWV---- 515

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               RA +        +  +  D         ++  +LFF S G VY      LP    Q
Sbjct: 516 ----RAAKGHDINGCELSFKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLPSARGQ 571

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                      L           F        +  V+ A+  G     K+ D    NR+G
Sbjct: 572 GE--------PLTGKLNPAEGALFEAAVGGEADQSVLLASDAGYGFIAKIGDLYVKNRNG 623

Query: 673 KIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL- 729
           K  +KL     IL      + ++  I   T  G+ +      I   +     G + IS+ 
Sbjct: 624 KACIKLPETSHILPPRILPKHDELFIACATNAGRLLICSTKEIPELS--RGKGNKLISIP 681

Query: 730 -----AKGDQVISMAIVLHADA 746
                ++ + VI + ++   D 
Sbjct: 682 TAKVVSREEYVIDIQVLTADDT 703



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 69/197 (35%), Gaps = 17/197 (8%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   G +  G    S   GD   + A                 +      L S   +  
Sbjct: 515 VRAAKGHDINGCEL-SFKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLPSARGQGE 573

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                 +  EG + E         +Q +L  S+ G+G      D  + NR+GK      +
Sbjct: 574 PLTGKLNPAEGALFE--AAVGGEADQSVLLASDAGYGFIAKIGDLYVKNRNGK--ACIKL 629

Query: 833 SKINEIGALVAVFPVNDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFS------ 884
            + +    ++    +  +D++ +   ++ G L+     EI   SR  KG  + S      
Sbjct: 630 PETS---HILPPRILPKHDELFIACATNAGRLLICSTKEIPELSR-GKGNKLISIPTAKV 685

Query: 885 TAKDERVVSVERIRESE 901
            +++E V+ ++ +   +
Sbjct: 686 VSREEYVIDIQVLTADD 702


>gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 751

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 383/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P+  +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E  +L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQEALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAIFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 748

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 388/742 (52%), Gaps = 68/742 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           + E   +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  V ++DNP   LD ++ +++GPD+PT   +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E+       IV++ +P+Q + + ++E++A  +R K++  + D+RDESD
Sbjct: 241 RGSIKMRAVWKKEEGE-----IVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D +++ L+  T L+  + VNM  +    KP    L+ IL  +
Sbjct: 296 HENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P   + ELM R 
Sbjct: 356 LSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEP---KAELMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L++VQ  AIL LRL  L  L    ++ E + L 
Sbjct: 412 -------------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMV 539
            E  E   IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ 
Sbjct: 447 KERDELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  R  D         ++  V+F  S G  Y
Sbjct: 507 VILSEKGWV--------RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L +G  +  ++       + +   V+ A+  G    
Sbjct: 559 ALDPTSLPSA--RSQGEPLTGKITLPEGATVQQVL------MANSETKVLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +
Sbjct: 611 CTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALS 670

Query: 718 GRNSVGVRGISL-----AKGDQ 734
                G + I++       GD+
Sbjct: 671 --KGKGNKIINISAAAAKSGDE 690



 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+ +S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG   ++    +   E  +L  S+ G+G   +  D    N++GK + +   + 
Sbjct: 576 TGKITLPEGATVQQVL--MANSETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+      +ND+   ++ +S+ G ++  PV+E+   S+  KG  I + +
Sbjct: 634 KVLPPQLL------ENDENLSLVAMSNVGRMLVFPVSELPALSK-GKGNKIINIS 681


>gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
 gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661]
          Length = 757

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 234/738 (31%), Positives = 371/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E          +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLTQDGAERRA-------LHKFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    +A+ID P   LD L++I++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAIALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRAVWKREDGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDES+ +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESNHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLNNRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R + V RR ++ L+K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILSEWLIYRRDTVRRRLQHRLDKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFEISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL+S  ++  ++K+EL +  D     RR+ + E      + + + 
Sbjct: 439 GEQDELAKERDQLQGILASERKMNTLLKKELQADSDLYGDDRRSPLREREEAKAISESEL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R+ +       G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSQSGWV--------RSAKGHDIDPGGLSYKAGDSYRAAARGKSNQPVVFV 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +     ++  ++ A+
Sbjct: 551 DSTGRSYALDPITLPSARGQGE--------PLTGKLTPPPGAVMEQVLMEADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       SD +  NR+GK  + L    ++++      ++D+LL  T  G+ + FP+ 
Sbjct: 603 NAGYGFVCTFSDLVSRNRAGKALLTLPQNAKVMTPLAIHHDDDLLLAITSAGRMLLFPVG 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + IS+
Sbjct: 663 DLPQLS--KGKGNKIISI 678



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S  G+G   +  D    NR+GK   A      N    ++    ++ +D 
Sbjct: 591 MEADDQKLLMASNAGYGFVCTFSDLVSRNRAGK---ALLTLPQNA--KVMTPLAIHHDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L ++  G ++  PV ++   S+           K  +++S+
Sbjct: 646 LLLAITSAGRMLLFPVGDLPQLSK----------GKGNKIISI 678


>gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis]
          Length = 436

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 217/460 (47%), Positives = 308/460 (66%), Gaps = 27/460 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                               SE Q  AILELRL +LTGL 
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTGLE 436


>gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894]
          Length = 738

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 249/785 (31%), Positives = 376/785 (47%), Gaps = 71/785 (9%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TV+F PNYDGSF EP +L AR P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM ++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K  A      +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKTLLDLLDAVRDESGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR +  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIREADEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G          
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGD--GVPVTSLIELESGSH------LL 614

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
              ++     ++ A+ +G     K+ D +   ++GK  M +D     L+      + + +
Sbjct: 615 HYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDAKETLVQALAIDAAGVVLTGTGRGGK 733

Query: 757 HMSAQ 761
                
Sbjct: 734 AQEEA 738



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  A + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D    +    L  +  
Sbjct: 614 LHYYA--APAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTID----DGAAPLAPMPV 667

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + D  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 668 LPDASQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDAKETLV 713


>gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp.
           piscicida]
          Length = 754

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 248/739 (33%), Positives = 388/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDMTM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    V +IDNP  DLDALME ++GPD+PT   +I  +  +
Sbjct: 173 VTGIAVGMATDIPPHNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAEL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y TGRGSI +R V H E        IV+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 KKVYRTGRGSIKMRAVWHKENGD-----IVITSLPHQVSGAKLLEQIATQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      + ++N L+  T L+  F VN+  L    +P+   L
Sbjct: 288 DLRDESDHENPTRIVVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ +R   V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +P   +
Sbjct: 348 VSIISEWLEYRRITVRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L+ +Q  AILE++L +L  L    IR
Sbjct: 405 AELMSR--------------------------FDLTAIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E +    +L S  RL  +IK+ELL+  +     RR+ +VE        + D 
Sbjct: 439 GEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDDRRSPMVERAEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      S +  +  D         ++   +F 
Sbjct: 499 IPSEPITVVLSEKGWI--------RHAKGHEVDPSTLSYKSGDSYLAHARGKSNQPAIFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  +  +M   +++        + A+
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPITGRLNLTPGSNMRQVMMAEDEQLW------LMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K SD +  N+SGK  + L    ++++ +       + IL  T  G+ + FPI
Sbjct: 603 DAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 42.9 bits (99), Expect = 0.23,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  
Sbjct: 584 SNMRQVMMAEDEQLWLMASDAGYGFICKSSDMVSKNKSGKALLTL-----PENAQVMAPQ 638

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            + D  +DQI+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 639 EIRDIEHDQILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 751

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 382/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E  +L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQEALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032]
 gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032]
          Length = 756

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/761 (31%), Positives = 386/761 (50%), Gaps = 75/761 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+  EP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    V++ID+P   LD L++I++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E        +V++ +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  Y L+K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRDTVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFGISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL+S  ++  ++K+E+ +  D     RR+ + E      M + D 
Sbjct: 439 GEQSDLEKERDQLQGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDM 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +        +  +  D         T+  V+F 
Sbjct: 499 LPSEPVTIVLSQMGWV--------RSAKGHDIDAKALSYKAGDNWLSSAKGKTNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  +  ++       +  +  ++ A+
Sbjct: 551 DSTGRSYALDPVSLPSA--RGQGEPLTGKLTLPPGAVVEHML------MTGEDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L     +L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +   +     G + IS+         D++  + I+     
Sbjct: 663 DLPQLS--KGKGNKIISIPSADAAKGDDKLAYLTILPPQST 701



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     + +S   GD    ++            I       A   +          
Sbjct: 515 RSAKGHDIDAKALSYKAGDN--WLSSAKGKTNQPVVFIDSTGRSYALDPVSLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +  ++Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 573 PLTGKLTLPPGAVVEHMLMTGEDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
             E   ++    +  +D ++L ++  G ++  PV ++   S+  KG  I S         
Sbjct: 629 -PENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLPQLSK-GKGNKIISIPSADAAKG 686

Query: 888 DERVVSVERIRES 900
           D+++  +  +   
Sbjct: 687 DDKLAYLTILPPQ 699


>gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 751

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 382/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E  +L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQEALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
 gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B]
          Length = 749

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/765 (30%), Positives = 383/765 (50%), Gaps = 69/765 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I          + ++S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVIAGPLS-----VETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  L++GQGN+GS 
Sbjct: 56  SELGLKAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSA 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L + A  LL +LG+ TVD++PN+DG+  EPVVL A+ PNVL+NG
Sbjct: 116 D-DPKSFAAMRYTESKLARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL E+VD  V +++NP   +  L E ++GPD+PT   +I     +
Sbjct: 175 TTGIAVGMATDVPPHNLREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDL 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R    +E        IVV  +PYQV+ + +LE+IA  ++ +++  ++
Sbjct: 235 QAMYQSGRGSVKMRASWSVEDG-----AIVVNALPYQVSGSRVLEQIAAQMQARKLPMVS 289

Query: 298 DLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD     R VI  +      + +++ L+  T L+  + VN+  +    +P    L
Sbjct: 290 DLRDESDHEHATRFVIVPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDGRPAVKAL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L++   R HVL G  IA  N+DEV+RIIR    P+ A 
Sbjct: 350 NVILGEWLRFRRTTVQRRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPA- 408

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+VQ  AIL+L+L  L  L    IR
Sbjct: 409 ----------------------------LIARFGLSDVQAEAILDLKLRNLAKLEEMKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +    L S +R+  +IK+EL++V +     RR+ I +        + + 
Sbjct: 441 GEQDELAAERDKLELTLGSDARMKTLIKKELMAVAEVHGDERRSPITQREEARPFSETEL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              + + + +S +G++        RA +      + +  +  D         ++   + F
Sbjct: 501 ASSDPLTIVLSEMGWI--------RAAKGHDIDPTSLNYKSGDGFKLAARGKSNLPTVVF 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   ++   G     ++         ++   + A+
Sbjct: 553 DSTGRAYSIASHALPSA--RGQGEPLTGRINPPSGATFEGLLT------GADSDKFLLAS 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G     + +D    N++GK  + L     +L        +   +   T LG+ + FP+
Sbjct: 605 DAGYGFVARFADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGRLLVFPL 664

Query: 711 SAIRVF---AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           S +       G   +G+ G   A  ++V+     + +D   +   
Sbjct: 665 SDLPEMARGKGNKIIGIPGPKAAAREEVVVGVCAMRSDDVLEVTA 709



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 31/245 (12%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISA---------IRVFAG--RNSVGV----RGI 727
           E+++V     +      T+  +   F  +          +    G  R + G       +
Sbjct: 470 ELMAVAEVHGDERRSPITQREEARPFSETELASSDPLTIVLSEMGWIRAAKGHDIDPTSL 529

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           +   GD    +A    ++          +  S     +     +   L    +     + 
Sbjct: 530 NYKSGDGFK-LAARGKSNLPTVVFDSTGRAYSIASHALPSARGQGEPLTGRINPPSGATF 588

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
           E        ++F+L  S+ G+G      D +  N++GK     ++    +   ++    V
Sbjct: 589 EGLLTGADSDKFLL-ASDAGYGFVARFADLQSKNKAGK--ACLNLP---KGARVLQPAAV 642

Query: 848 NDNDQIIL--VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRE 899
              DQ+++  V+  G L+  P++++   +R  KG  I         A++E VV V  +R 
Sbjct: 643 PLGDQLLVAAVTSLGRLLVFPLSDLPEMAR-GKGNKIIGIPGPKAAAREEVVVGVCAMRS 701

Query: 900 SEIVD 904
            ++++
Sbjct: 702 DDVLE 706


>gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
 gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1]
          Length = 752

 Score =  539 bits (1389), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/769 (31%), Positives = 387/769 (50%), Gaps = 62/769 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTEKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYADVLLGELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           + EV    +A+ID P   LD +++I++GPD+PT   +I  R  I+  Y +GRGS+ +R V
Sbjct: 185 VREVAQAAIALIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+  +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPSVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+                   
Sbjct: 360 RRLNYRLEKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPK------------------- 400

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E N L  E  +   I
Sbjct: 401 ----------PVLMSRFAISETQAEAILELKLRHLAKLEEMKIRGEQNDLEKERDQIQAI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  +     RR+ + E      M + D +  E + + +S + +V
Sbjct: 451 LASERKMNNLLKKELQADAEAFGDDRRSPLHEREEAKAMSEHDMLPSEPVTIVLSQMSWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAKGLSYKAGDSWKASVKGKSNQPVVFIDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         +   ++ A+  G       SD +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MEGDEQKLLMASDAGYGFVCTFSDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T  G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENARVMPPLVIEDESDMLLAITSAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +   D       + H      +    +     + +L   + +++T  +
Sbjct: 673 GIPTADAANGADGLAHLYILPPQSTLTIHVGKRKIKLRPEELQKVTGER 721



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     +G+S   GD     A V          I       A   +          
Sbjct: 511 RSAKGHDIDAKGLSYKAGDS--WKASVKGKSNQPVVFIDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  EQ +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 569 PLTGKLTLPPGATVDHMLMEGDEQKLLMASDAGYGFVCTFSDLVARNRAGKALITLPENA 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 LV     +++D ++ ++  G ++  PV+++   S+  KG  I 
Sbjct: 629 RVMP-PLV---IEDESDMLLAITSAGRMLMFPVSDLPQLSK-GKGNKII 672


>gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont]
          Length = 757

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 239/736 (32%), Positives = 371/736 (50%), Gaps = 62/736 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV +  V +ID P+  LD L+EI++GPDFPT   +I  R  I+  Y  GRGSI 
Sbjct: 185 PPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSIR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
            R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   
Sbjct: 245 QRAVWKKEDGE-----VVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHENPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+VI         D ++N L+  T LQ  + VN+  +    +P    L+ IL  ++ +R 
Sbjct: 300 RLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDNRPAVKNLLEILSEWLVYRR 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR  + L +   R H+L GL +A  N+DEV+ IIR    P+               
Sbjct: 360 DTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPK--------------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +SE Q  AILEL+L  L  L    IR E   L  E  +
Sbjct: 405 --------------PVLMSRFDISETQAEAILELKLRHLAKLEEMKIRGEQAELEKERDQ 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSH 544
              IL+S  ++  ++K+ELL+     D  RR+ + E        + + +  E + + +S 
Sbjct: 451 LQAILASDRKMSNLLKKELLADSQTYDDDRRSPLHEREEAKALSENELVSAEPVTIVLSQ 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
           +G+V        R+ +      +G+  +  D         ++  V F  S G  Y     
Sbjct: 511 MGWV--------RSAKGHDIDPAGLSYKAGDSYRAAARGKSNQPVAFIDSTGRSYTLDPT 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    Q           L             +     ++  ++ A+  G       +D
Sbjct: 563 SLPSARGQGE--------PLTGKLTPPPGAVIEQVLMEADDQKLLMASDAGYGFICTFAD 614

Query: 665 FIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +  NR+GK  + L    E+++     + ++ +L  T+ G+ + FP++ +   +     G
Sbjct: 615 LVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAITQAGRMLMFPVADLPQMS--KGKG 672

Query: 724 VRGISLAKGDQVISMA 739
            + IS+   D    + 
Sbjct: 673 NKIISIPSADAAAGVD 688



 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 18/226 (7%)

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV----RGISLAKG 732
              D         +  +    ++       P++ +    G  R++ G      G+S   G
Sbjct: 476 YDDDRR---SPLHEREEAKALSENELVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D   + A                 +      L S   +        +   G + E+    
Sbjct: 533 DSYRAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVIEQVL-- 590

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++A   V+  D 
Sbjct: 591 MEADDQKLLMASDAGYGFICTFADLVSRNRAGKALLTL-----PENAEVMAPLAVHSGDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           ++L ++  G ++  PV ++   S+  KG  I S    +    V+++
Sbjct: 646 MLLAITQAGRMLMFPVADLPQMSK-GKGNKIISIPSADAAAGVDKL 690


>gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1]
 gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1]
 gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1]
          Length = 752

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 235/722 (32%), Positives = 373/722 (51%), Gaps = 62/722 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   A  RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAEMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKII 672

Query: 728 SL 729
           ++
Sbjct: 673 NI 674



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678


>gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
 gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM
           30120]
          Length = 751

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/759 (31%), Positives = 382/759 (50%), Gaps = 76/759 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG  TVD+ PN+DG+  EP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA+++ P ++LD +M+ I GPDFPT   +I     I
Sbjct: 173 TTGIAVGMATDIPPHNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E+ +      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKVYQNGRGSVRMRAVWEKEEGNA-----VITALPHQVSGAKILEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 348 VEILNEWIIYRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM R                            +S+ Q  AILEL+L  L  L    IR
Sbjct: 405 AVLMSR--------------------------FNISDTQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  E   IL S +RL  +IK+E+ +        RR+ + E        + + 
Sbjct: 439 GEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAYGDDRRSPLQEREEAKALSEHEI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R+ +      S +  +  D         ++ + +F 
Sbjct: 499 LPSEPITVVLSDMGWV--------RSAKGHDIEPSNLSYKAGDSFKGAARGKSNQAAVFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    +++G+ L   L+L  G  I  ++       +      + A+
Sbjct: 551 DSTGRSYSIDPLELPSA--RSQGEPLTGKLTLPPGATIEHVL------MAPEEQKYLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  M L    ++++      E +  +L  TK G+ + FP+
Sbjct: 603 DAGYGFICTFNDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLAITKAGRMLLFPV 662

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
           S +   +     G + I++      +  D ++ + ++  
Sbjct: 663 SDLPQLS--KGKGNKIINITGAQAASGEDLLVWLMVIPP 699



 Score = 44.8 bits (104), Expect = 0.064,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 14/178 (7%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD     A      A          +      L S  ++        +   G   E  
Sbjct: 530 KAGDSFKGAARGKSNQAAVFLDSTGRSYSIDPLELPSARSQGEPLTGKLTLPPGATIE-- 587

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +  +EQ  L  S+ G+G   +  D    N++GK + +   +       +  +   N+
Sbjct: 588 HVLMAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKALMSLPENAK----VMAPIELNNE 643

Query: 850 NDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
            + ++L ++  G ++  PV+++   S+  KG  I +       + ++ +V +  I   
Sbjct: 644 KEDLLLAITKAGRMLLFPVSDLPQLSK-GKGNKIINITGAQAASGEDLLVWLMVIPPQ 700


>gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
 gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica
           PHL213]
          Length = 748

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 242/742 (32%), Positives = 388/742 (52%), Gaps = 68/742 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           + E   +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  V ++DNP   LD ++ +++GPD+PT   +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E+       IV++ +P+Q + + ++E++A  +R K++  + D+RDESD
Sbjct: 241 RGSIKMRAVWKKEEGE-----IVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D +++ L+  T L+  + VNM  +    KP    L+ IL  +
Sbjct: 296 HENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P   + ELM R 
Sbjct: 356 LSFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEP---KAELMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L++VQ  AIL LRL  L  L    ++ E + L 
Sbjct: 412 -------------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMV 539
            E  E   IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ 
Sbjct: 447 KERDELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPTEDVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  R  D         ++  V+F  S G  Y
Sbjct: 507 VILSEKGWV--------RCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L +G  +  ++       +     V+ A+  G    
Sbjct: 559 ALDPTSLPSA--RSQGEPLTGKITLPEGAVVQQVL------MASPETKVLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
              +D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +
Sbjct: 611 CTFADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQ 734
                G + I++       GD+
Sbjct: 671 --KGKGNKIINISAAAAKSGDE 690



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 68/175 (38%), Gaps = 16/175 (9%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+ +S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQALSHRAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG + ++    +   E  +L  S+ G+G   +  D    N++GK + +   + 
Sbjct: 576 TGKITLPEGAVVQQVL--MASPETKVLMASDSGYGFICTFADLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+      +ND+   ++ +S+ G ++  PV+E+   S+  KG  I + +
Sbjct: 634 KVLPPQLL------ENDENLSLVAMSNVGRMLVFPVSELPQLSK-GKGNKIINIS 681


>gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
 gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891]
          Length = 758

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 246/808 (30%), Positives = 407/808 (50%), Gaps = 68/808 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SSEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +ID+P  +L  +M  ++GPD+PT   +I  +  ++  Y TG
Sbjct: 181 MATDIPPHNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS+ +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSVKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D ++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++E+Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  R+  ++K+E+ +  D+    RR+ +VE        + D +  E + 
Sbjct: 447 KEREKLEKLLGSERRMNTLLKKEIQADADKYGDDRRSPLVERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  + G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQQAVFLGNDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   +P    +++G+ +   L++N G  I  ++   E++        +  +  G    
Sbjct: 559 SLESHSMPSA--RSQGEPITGRLNINAGTSIRHVVMGEEEQLW------LIGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  N+SGK  + L +  E++S +T +    ++IL  T  G+ + FPI  +    
Sbjct: 611 CKGSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEILTITNQGRMLLFPIKDLPQLG 670

Query: 718 GRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G + I++      + ++ +S  I L   +         K       L +   E  
Sbjct: 671 --KGKGNKIINIPAAKAKEREEYVSHLISLPQGSSVTLYAGKRKLGLKASDLENFRGERG 728

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFI 800
                       ++    +     +  I
Sbjct: 729 RRGGLLPRGLQRVTRIDIESADSTDSEI 756



 Score = 45.6 bits (106), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
           R   +  +EQ  L  S+ G+G      D    N+SGK   A      N    +++   ++
Sbjct: 588 RHVVMGEEEQLWLIGSDAGYGFVCKGSDLLSKNKSGK---ALVTLPANS--EVISPQTIS 642

Query: 849 --DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
             D D+I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 643 NLDTDEILTITNQGRMLLFPIKDLPQLGK-GKGNKIIN 679


>gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355]
          Length = 757

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/739 (32%), Positives = 368/739 (49%), Gaps = 62/739 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   ELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID+P   LDAL+EI++GPDFPT   +I  R  I+  Y  GRG
Sbjct: 182 TDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+  R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ 
Sbjct: 297 NPTRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLV 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+            
Sbjct: 357 FRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPK------------ 404

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    +SE Q  AILEL+L  L  L    IR E + L  E
Sbjct: 405 -----------------PVLMSRFDISETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +   IL+S  ++  ++K+EL +  +     RR+ + E        + + +  E + + 
Sbjct: 448 RDQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVPSEPVTIV 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R+ +      +G+  +  D         ++  V F  S G  Y  
Sbjct: 508 LSQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    Q           L             +         ++ A+  G      
Sbjct: 560 DPTSLPSARGQGE--------PLTGKLTPPPGAVMEQVLMEPEEQRLLMASDAGYGFICT 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            +D I  NR+GK  + L     ++  +    +++ +L  T+ G+ + FP+  +   +   
Sbjct: 612 FNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMS--K 669

Query: 721 SVGVRGISLAKGDQVISMA 739
             G + IS+   D      
Sbjct: 670 GKGNKIISIPSADAASGAD 688



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 13/185 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  ++ A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    ++ +EQ +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 575 TGKLTPPPGAVMEQVL--MEPEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENA 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 ++    V+  D ++L ++  G ++  PV E+   S+  KG  I S    +    
Sbjct: 633 R-----VMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSK-GKGNKIISIPSADAASG 686

Query: 894 VERIR 898
            +++ 
Sbjct: 687 ADKLA 691


>gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103]
 gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103]
          Length = 771

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 237/746 (31%), Positives = 369/746 (49%), Gaps = 62/746 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E      E  + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M +
Sbjct: 10  EDEDLMSELTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSE 69

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D 
Sbjct: 70  LGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD- 128

Query: 123 DPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DP   AA RYTE RL K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  
Sbjct: 129 DPKSFAAMRYTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTT 188

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKN 239
           GIAVGMAT+IP HNL EV    +A+ID+P   LDAL+EI++GPDFPT   +I  R  I+ 
Sbjct: 189 GIAVGMATDIPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRK 248

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  GRGS+  R V   E        +V+T +P+QV+ A +LE+IA  +R K++  + DL
Sbjct: 249 IYQNGRGSVRQRAVWKKEDGE-----VVITALPHQVSGARVLEQIANQMRNKKLPMVEDL 303

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD +   R+VI  +      + ++N L+  T L+  + +N+  +    +P    L+ 
Sbjct: 304 RDESDHENPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLE 363

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++ FR + V RR  Y L++   R H+L GL +A  N+DEV+ IIR    P+     
Sbjct: 364 ILSEWLVFRRDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPK----- 418

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           +SE Q  AILEL+L  L  L    IR E
Sbjct: 419 ------------------------PVLMSRFDISETQAEAILELKLRHLAKLEEMKIRGE 454

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIV 534
            + L  E  +   IL+S  ++  ++K+EL +  +     RR+ + E        + + + 
Sbjct: 455 QSELEKERDQLQAILASERKMNTLLKKELQADSNNFGDDRRSPLREREEAKALSETELVP 514

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + + +S +G+V        R+ +      +G+  +  D         ++  V F  S
Sbjct: 515 SEPVTIVLSQMGWV--------RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDS 566

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y      LP    Q           L             +         ++ A+  
Sbjct: 567 TGRSYTLDPTSLPSARGQGE--------PLTGKLTPPPGAVMEQVLMEPEEQRLLMASDA 618

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAI 713
           G       +D I  NR+GK  + L     ++  +    +++ +L  T+ G+ + FP+  +
Sbjct: 619 GYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQAGRMLMFPVGEL 678

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMA 739
              +     G + IS+   D      
Sbjct: 679 PQMS--KGKGNKIISIPSADAASGAD 702



 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 13/185 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  ++ A                 +      L S   +    
Sbjct: 529 RSAKGHDIDPAGLSYKAGDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPL 588

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    ++ +EQ +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 589 TGKLTPPPGAVMEQVL--MEPEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENA 646

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 ++    V+  D ++L ++  G ++  PV E+   S+  KG  I S    +    
Sbjct: 647 R-----VMTPMAVHHEDDMLLAITQAGRMLMFPVGELPQMSK-GKGNKIISIPSADAASG 700

Query: 894 VERIR 898
            +++ 
Sbjct: 701 ADKLA 705


>gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
 gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827]
          Length = 752

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/758 (31%), Positives = 376/758 (49%), Gaps = 76/758 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +L   TVD+ PN+DG+  EP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA++D P + LD +M  +  PDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  +      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VDILNEWIVYRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFNLSDTQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  E   IL S  +L  +IK+E+ +        RR+ + E        + + 
Sbjct: 439 GEQDELIKERDELQSILGSERKLNTLIKKEIQADAKAYGDERRSPLREREEAKALSEHEI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R+ +      S +  +  D         T+  V+F 
Sbjct: 499 LPSEPITVVLSEMGWV--------RSAKGHDIEPSNLNYKAGDSFKGAARGKTNQPVVFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    +++G+ L   LSL  G  +  ++       + +    + A+
Sbjct: 551 DTTGRSYSVDPLELPSA--RSQGEPLTGRLSLPPGATVEHVL------MAQDEQKYLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L    +IL+      E +  +L  TK G+ + FP+
Sbjct: 603 DAGYGFICTFNDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLAITKAGRMLMFPV 662

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVL 742
           + +   +     G + I++      +  D ++ + ++ 
Sbjct: 663 ADLPQLS--KGKGNKIINITGAQAASGEDLLVWLLVLP 698



 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 8/156 (5%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD     A            +       +   L                     +   
Sbjct: 530 KAGDSFKGAA--RGKTNQPVVFLDTTGRSYSVDPLELPSARSQGEPLTGRLSLPPGATVE 587

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   EQ  L  S+ G+G   +  D    N++GK +     +       L  +   N+
Sbjct: 588 HVLMAQDEQKYLMASDAGYGFICTFNDLVTKNKTGKALINLPDNAK----ILTPIEINNE 643

Query: 850 NDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            + ++L ++  G ++  PV ++   S+  KG  I +
Sbjct: 644 QEDVLLAITKAGRMLMFPVADLPQLSK-GKGNKIIN 678


>gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894]
 gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894]
          Length = 756

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 240/761 (31%), Positives = 385/761 (50%), Gaps = 75/761 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+  EP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    V++ID+P   LD L++I++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E        +V++ +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++AFR + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFGISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL+S  ++  ++K+E+ +  D     RR+ + E      M + D 
Sbjct: 439 GEQSDLEKERDQIQGILASERKMNTLLKKEIQADADAYGDDRRSPLHEREEAKAMSEHDM 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +        +  +  D         ++  V+F 
Sbjct: 499 LPSEPVTIVLSQMGWV--------RSAKGHDIDAKALSYKAGDGWLSSVKGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ +   L+L  G  +  ++       +     ++ A+
Sbjct: 551 DSTGRSYALDPVSLPSA--RGQGEPITGKLTLPPGAVVEHML------MTGEEQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D I  NR+GK  + L     +L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +   +     G + IS+         D++  + I+     
Sbjct: 663 DLPQLS--KGKGNKIISIPSADAAKGDDKLAYLTILPPQST 701



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 19/193 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G     + +S   GD    ++ V          I       A   +          
Sbjct: 515 RSAKGHDIDAKALSYKAGDG--WLSSVKGKSNQPVVFIDSTGRSYALDPVSLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +  +EQ +L  S+ G+G   +  D    NR+GK +       
Sbjct: 573 PITGKLTLPPGAVVEHMLMTGEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
             E   ++    +  +D ++L ++  G ++  PV ++   S+  KG  I S         
Sbjct: 629 -PENAHVLKPLEIEHDDDMLLAITAAGRMLMFPVADLPQLSK-GKGNKIISIPSADAAKG 686

Query: 888 DERVVSVERIRES 900
           D+++  +  +   
Sbjct: 687 DDKLAYLTILPPQ 699


>gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 748

 Score =  539 bits (1388), Expect = e-151,   Method: Composition-based stats.
 Identities = 238/743 (32%), Positives = 385/743 (51%), Gaps = 68/743 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+G
Sbjct: 183 TDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +
Sbjct: 243 SIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + +++ L+  T L+  + VNM  +    KP   TL  IL  ++ 
Sbjct: 298 NPIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKTLHTILTEWLV 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR  + L+K  +R H+L GL IA  N+DE + IIR    P+TA          
Sbjct: 358 FRRTTVTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTA---------- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q  AIL LRL  L  L   +++ E + L  E
Sbjct: 408 -------------------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V 
Sbjct: 449 RDELQLTLGSERRLNTLIKKEIQADAKVFASPRRSPLVERAEAKAISESDLTPTEDVTVI 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y  
Sbjct: 509 LSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYAL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G      
Sbjct: 561 DPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFICS 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +  
Sbjct: 613 FEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS-- 670

Query: 720 NSVGVRGISL-----AKGDQVIS 737
              G + I++      +G+++++
Sbjct: 671 KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  +G   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 576 TGKITLPDGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 634 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
 gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10]
          Length = 773

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 254/812 (31%), Positives = 386/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  +   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDAPDADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR +  P+ A                                   L++ Q 
Sbjct: 418 LNIDEVIRIIREADEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIETDAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G  +    
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSHLMHYF 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
             P       +  ++ A+ +G     K+ D +   ++GK  M +DS    L+        
Sbjct: 618 AAPV------DQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDSGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + E  +
Sbjct: 731 GGKAQDETLSYAGLAPHIGKRARKGRAPETKL 762



 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL-VAV 844
                      +Q +L  S  GFG      D     ++GK     D       GA+ +A 
Sbjct: 613 LMHYFA--APVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTID------SGAVPLAP 664

Query: 845 FPVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            PV  N  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 665 MPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 713


>gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
 gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17]
          Length = 750

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 373/729 (51%), Gaps = 57/729 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           GI        +   YL YA++ I  R++PD+RDGLKPVHRR+L+ M  + ++    Y KC
Sbjct: 12  GILDAPFDSALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLKLDPAAGYKKC 71

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  AA RYTE R
Sbjct: 72  ARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAYRYTEAR 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + A  L+D L +D V +RP Y+G  QEP +    +PN+L NG  GIAVGMAT+IP HN
Sbjct: 132 LTQVAIDLMDGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGASGIAVGMATSIPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRGV 253
             E++D  + V+D+PD D DA++  ++GPDFPTG +++    I + +Y TGRG   +R  
Sbjct: 192 AAELLDAAIHVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILRESYTTGRGGFRVRAR 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+  G   QIVV+EIPY V K  ++E+IA L+ +K++  +AD+RDESD Q  R+V+E
Sbjct: 252 WEIEREKGGGWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILADVRDESDAQ-VRIVLE 310

Query: 314 LK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVR 371
            + R     V+++ L+R++ L++  S+N+  L+  + P   +L   L A+V  +  V+ R
Sbjct: 311 PRSRTVDPQVLMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREALAAWVEHQFVVLRR 370

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++ L K  DR  +L G  +A  NLD V+ IIR    P+                  +I
Sbjct: 371 RSEHRLGKIADRIELLDGYLVAYLNLDRVIEIIRTEDEPK----------------AVMI 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
           +                L++ Q  AIL +RL  L  L   +IR E + L  E ++   +L
Sbjct: 415 E-------------EFRLTDRQAEAILNMRLRSLRRLEEFEIRGERDKLDKEREQLTQLL 461

Query: 492 SSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVREDMVVTVSH 544
            S  R    +K++L  ++D          RRT I E     +   E  I RE + V +S 
Sbjct: 462 GSEQRQRTRMKKDLGKIRDRYGLETILGARRTLIEEAAPTRDIPLEAMIEREPITVILSQ 521

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+++ +   V  A     K       ++ D     F   T   +L  ++ G  +     
Sbjct: 522 RGWIRAMKGHVDLASAETAK------FKEGDGPAFAFHAQTTDKLLLAAANGRFFTLAAD 575

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           +LP G     G+ +  ++ L+        +       +     ++ A   G       +D
Sbjct: 576 KLPGGRGF--GEPVRAMIDLDGS------IGIVGFLPAARAAKLLVAASDGRGFIVPAAD 627

Query: 665 FIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            I   R GK  +   +   +  V     +++ +       + + FP++     +     G
Sbjct: 628 TIAETRKGKTVLTPRAGASLKVVRPVGAEDDYVAAIGDNRKLLVFPLTEFVELS--RGTG 685

Query: 724 VRGISLAKG 732
           V+      G
Sbjct: 686 VQLQRYRDG 694


>gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43]
          Length = 772

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 250/809 (30%), Positives = 383/809 (47%), Gaps = 71/809 (8%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E        +++    +  YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDNTPDLFAEPAAPEGDFLTLGRYAERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGDNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF EP +L  R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLLDEIDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I +P +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKAMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAA 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLASILGEWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                                   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKAA-----------------------------LISAFGLTERQADDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIETDAKQYGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGD--GVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDI 696
            ++       ++ A+ +G     K+ D +   ++GK  M +D+    L+      +   +
Sbjct: 621 AEQP------LLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPVLPDAAQV 674

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
              +  G+ + F +  ++  +G    GV  ++L   + ++    +  A           K
Sbjct: 675 ACLSSGGRLLVFGMDEMKALSG-GGRGVILMALDAKETLVQALAINAAGVVLTGTGRGGK 733

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                    + +       +   + +  +
Sbjct: 734 AQEEALAGRALEPHVGKRARKGRAPDTRL 762


>gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202]
 gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60]
          Length = 758

 Score =  539 bits (1388), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/738 (32%), Positives = 371/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    + E        V++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLTHDNSE-------RVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL +LG+ TVD+  N+DG+ QEP  L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA++DNP   LD L+  I+GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V   E++      IV++ +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 RKIYRTGRGSVRMRAVWRKEESE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++++R E V RR  Y L K   R H+L GL  A  N+DEV+ IIR    P+   
Sbjct: 348 REILSEWLSYRRETVRRRLNYRLEKVLKRLHILEGLLCAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLVARFGLSDTQAEAILELKLRHLARLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E ++L  E      +L+S  +L  +IK+E+++  +     RR+ + E      M + D 
Sbjct: 439 GEQDALAQERDRLQTLLASERKLGTLIKKEIMADAETYGDARRSPLQERSEARAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEGGWV--------RSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L                 + +N  ++ A+
Sbjct: 551 DSSGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEHVLMAADNQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       SD +  NR+GK  + L    ++L+      ++D +L  T+ G+ + FP+ 
Sbjct: 603 DAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVH 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 DLPQLS--KGKGNKIVSI 678



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   + A            I       A   L          
Sbjct: 515 RSAKGHDIDPSGLNYKAGDAFRAAA--RGKSNQPVVFIDSSGRSYALDPLTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +    Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 573 PLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDLVARNRAGK---AMLTLP 629

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            N    ++    +N +D ++L +++ G ++  PV+++   S+           K  ++VS
Sbjct: 630 ENA--KVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSK----------GKGNKIVS 677

Query: 894 V 894
           +
Sbjct: 678 I 678


>gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 751

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 383/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR K+ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            L+E+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLTEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +L S ++L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLGSEAKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVPAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 748

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/739 (30%), Positives = 372/739 (50%), Gaps = 59/739 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++S   + + I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 1   MTSLSSDIENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILKAFV 362
               R+V+E K R     ++++ L+  TSL++  S+NM  L+ +       L  +LK ++
Sbjct: 301 E-NIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P++          
Sbjct: 360 AHQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKS---------- 409

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q  AIL +RL  L  L   +I  E +SL  
Sbjct: 410 -------------------VMIAEFKLSDRQAEAILNMRLRALKRLEEAEITAERDSLKE 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVR 535
           E      ++ S +     +K +L +++           R+T I E         +  I R
Sbjct: 451 ERAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLGARQTLIEEQTPAKAIPLDAMIER 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E M V +S  G+++ +            K    +  ++ D    +    T   +L  +  
Sbjct: 511 EPMTVVLSKRGWIRGLK------GHVDLKSTEAMRFKEGDEADFICHAYTTDRLLIATED 564

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y     RLP G     G+ +  +L ++   +I  ++P            ++  +  G
Sbjct: 565 GRFYTLLADRLPGGRGF--GEPVRLMLDISNDTKIMALLPLN------PEGKLLVVSSSG 616

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAI 713
                ++++ +   R GK  +++   DE L V        + I L  +  + + FP+S I
Sbjct: 617 RGFITQMTNLVAETRKGKQIVRVKK-DEYLMVLKVIEEGHDHIALIGENRKLLAFPLSQI 675

Query: 714 RVFAGRNSVGVRGISLAKG 732
              A     GV+      G
Sbjct: 676 PELA--KGSGVQLQRYRGG 692


>gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6]
 gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6]
          Length = 773

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 253/812 (31%), Positives = 386/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  +   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDAPDADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR +  P+ A                                   L++ Q 
Sbjct: 418 LNIDEVIRIIREADEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLANESAMKRLMIKEIETDAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G  +    
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSHLMHYF 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
             P       +  ++ A+ +G     K+ D +   ++GK  M +D+    L+        
Sbjct: 618 AAPV------DQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + E  +
Sbjct: 731 GGKAQDETLSYAGLAPHIGKRARKGRTPETKL 762



 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYFA--APVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 713


>gi|99035107|ref|ZP_01314893.1| hypothetical protein Wendoof_01000267 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 711

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 334/702 (47%), Positives = 474/702 (67%), Gaps = 5/702 (0%)

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            ++NP++  D L+E++ GPDFPTG  ILGR+GI++A+ATGRGSIV++G +HIE    DR+
Sbjct: 5   YVNNPEVTFDELLEVMPGPDFPTGGTILGRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQ 64

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            IV+ EIPYQVNK  ++EKI ELV+EKRI  I ++RDESD+ G RVVI+LKR A A  IL
Sbjct: 65  AIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLKRNAEASFIL 124

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           NQ+   T L+S FSVN + LN  +P   +L  I+ AFV FR+EV++RRT++ L K R++A
Sbjct: 125 NQILGLTPLRSSFSVNTLVLNNNRPALMSLKEIITAFVDFRKEVLIRRTEFRLRKTREKA 184

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+ +GL IAV ++DEV++IIR + +P  A REL+ + W  S+  + I  +   S +   D
Sbjct: 185 HIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKD 244

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G   L+E+Q +AIL+++L RLTGL +D +  EL+S+   IKE +  L S  +L+  IK  
Sbjct: 245 GVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNN 304

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L   K+    PR+T I E   D+E ED I +EDMV+TV+  GY+KRV LS YR QRRGGK
Sbjct: 305 LQETKNRFAVPRKTSIEESDADIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGK 364

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
           G+ G  +++ED +T+LF+ +THTS LFFS++G VY+ KV++LP+  P ARG+AL+NI  L
Sbjct: 365 GKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPL 424

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
           + GE IT IMP P +     N  +VFAT +GN+RRN L+DF  I  +GKIA+KLD  D++
Sbjct: 425 SDGETITNIMPLPSEN--DENQNIVFATAYGNIRRNSLADFHYIPSNGKIAIKLDEGDKL 482

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           +SV+ C + + +LL+T LG+ +RF +S +R F  RNS GVRGI L K D VISM I+   
Sbjct: 483 VSVKVCNEIDHVLLSTTLGKSIRFVVSDVRQFKSRNSDGVRGIKLVKNDSVISMTILNGI 542

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
               + +  Y+K   A+R L +     I S    +  +  I  E   +L + E+FILT++
Sbjct: 543 GVATETKELYLKVPLAKR-LGTAINNSIDSKLEKTLNDLGIDNELFLKLAVNEEFILTIT 601

Query: 805 EKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
           E GFGKRTS+Y++R++NR G GI     +  N  G +VA FPV   D I+L++DKG LIR
Sbjct: 602 ENGFGKRTSAYEYRVTNRGGVGITNILTTSRN--GNVVASFPVEQGDNIMLITDKGKLIR 659

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           + VNEIRIA R+T+GV +F T   E+VVSV +I + +  +++
Sbjct: 660 ISVNEIRIAGRSTQGVTLFKTESREKVVSVAKIEDPDSTEDS 701


>gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 751

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 380/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLSEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEARALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L    +++        ++N +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQNWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSL-----PGGAKVILPRPVA 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKVSDLPQLGK-GKGNKIIGI-PGERVAS 689


>gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187]
 gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187]
          Length = 759

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/743 (32%), Positives = 399/743 (53%), Gaps = 65/743 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S  E   +G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSDAELSLEGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP 
Sbjct: 61  SALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL + +  LL +L + TV+++PN+DG+ QEP +L AR P++L+NG  GIA
Sbjct: 120 SFAAMRYTEARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HN+ EV   C+ +++ PD  +  L+E ++GPD+PT   +I  R+ I+  Y 
Sbjct: 180 VGMATDIPPHNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +G+GSI  R V H+E        IV+T +P+Q + A ++E+IA  ++ K++  ++DLRDE
Sbjct: 240 SGKGSIKARAVYHMEDGD-----IVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILK 359
           SD +   R+VI  +      + ++  L+  T L+  + VN+  L   ++P+   L+ IL 
Sbjct: 295 SDHENPTRLVIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++AFR E V RR ++ L+K  +R H+L GL IA  N+DEV+ IIR    P   ++ELM+
Sbjct: 355 EWLAFRRETVRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIRNEDEP---KKELMR 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LSE+Q  AIL+L+L  L  L    IR E + 
Sbjct: 412 R--------------------------FGLSEIQADAILDLKLRHLAKLEEFKIRGEQDE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVRED 537
           L  E  +   +L S  +L  ++K+E+ +  ++    RR+ +VE     +  +++    E 
Sbjct: 446 LAKERDQLEALLGSARKLGNLLKKEIQADAEKYGDDRRSPLVERQEAKQLTEKELTPSEL 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V VS +G+V        RA +       G+  +  D         ++   +F ++LG 
Sbjct: 506 VTVVVSEMGWV--------RAAKGHDVDVQGLNYKAGDGYLVSAQGRSNQQTVFMTNLGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y  +   LP    + +G+ L   LS   GE+   ++   EDE        +  +  G  
Sbjct: 558 TYSLEAHTLPSA--RGQGEPLTGKLSFTAGEQTRYVLLGNEDERY------LICSDAGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIR 714
              + +D I  N++GK  + L    ++L  +   +++D    L+ +  G+ + FP++ + 
Sbjct: 610 FLCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDDALCLVISNEGRMLLFPLNTLP 669

Query: 715 VFAGRNSVGVRGISLAKGDQVIS 737
                   G + I +   D+V S
Sbjct: 670 QLG--KGKGNKLIGIPA-DKVAS 689



 Score = 41.7 bits (96), Expect = 0.57,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 719 RNSVG----VRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R + G    V+G++   GD  ++S              +  +    +             
Sbjct: 517 RAAKGHDVDVQGLNYKAGDGYLVSA---QGRSNQQTVFMTNLGRTYSLEAHTLPSARGQG 573

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                        + R   L  +++  L  S+ G+G      D    N++GK +      
Sbjct: 574 EPLTGKLSFTAGEQTRYVLLGNEDERYLICSDAGYGFLCEYNDLISKNKNGKALLTLPEG 633

Query: 834 KINEIGALVAVFPVNDNDQI-ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                  L A     D+D + +++S++G ++  P+N +    +  KG  +      ++V 
Sbjct: 634 AQVLPPQLTA---KQDDDALCLVISNEGRMLLFPLNTLPQLGK-GKGNKLIGI-PADKVA 688

Query: 893 S 893
           S
Sbjct: 689 S 689


>gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
 gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD]
          Length = 773

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 253/812 (31%), Positives = 387/812 (47%), Gaps = 77/812 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  +   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDAPDADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR+++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR +  P+ A                                   L++ Q 
Sbjct: 418 LNIDEVIRIIREADEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLANESAMKRLMIKEIETDAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G  +    
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSHLMHYF 617

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE- 693
             P       +  ++ A+ +G     K+ D +   ++GK  M +D+    L+        
Sbjct: 618 AAPV------DQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNA 671

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A         
Sbjct: 672 TQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLIGTGR 730

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             K                   +   + E  +
Sbjct: 731 GGKAQDETLSYAGLAPHIGKRARKGRAPETKL 762



 Score = 41.7 bits (96), Expect = 0.56,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 6/167 (3%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D   +     L  + 
Sbjct: 613 LMHYFA--APVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAV----PLAPMP 666

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 667 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 713


>gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 751

 Score =  538 bits (1387), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 382/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E  +L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQEALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGAAFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|237732925|ref|ZP_04563406.1| DNA topoisomerase IV subunit A [Mollicutes bacterium D7]
 gi|229383994|gb|EEO34085.1| DNA topoisomerase IV subunit A [Coprobacillus sp. D7]
          Length = 614

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 237/638 (37%), Positives = 362/638 (56%), Gaps = 37/638 (5%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+   M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  
Sbjct: 1   MSLETIMGDRFGKYSKYIIQDRALPDVRDGLKPVQRRILYSMYKEGNLYSKPYRKSAKTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G YHPHG+ ++YDA+ R++QDW +R+ L++ QGN GS+D DP AA RYTE RL   
Sbjct: 61  GNVIGNYHPHGDISVYDAMVRLSQDWKMRVPLVDMQGNNGSIDNDPAAAMRYTEARLSAI 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL DL KDTV    N+D +  EP VL A YPN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AVELLKDLDKDTVLMSLNFDDTEYEPTVLPAAYPNLLVNGATGISAGYATDIPPHNLEEV 180

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +D  +  I  P+  L+ LME I+GPDFPTGA++ G+ GI NA+ +GRG +++R  S + +
Sbjct: 181 IDATIHRIKYPNCSLEKLMEFIKGPDFPTGAIVEGKQGILNAFKSGRGKVIVRSTSEMIE 240

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                 +IV+TEIPY+VNKA ++ KI E+   + I  I ++RDESDR G R+VI+LK+  
Sbjct: 241 EKT-MNKIVITEIPYEVNKAELVRKIDEIRFNRNIDGIIEVRDESDRTGLRIVIDLKKDI 299

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +    LN LY+ T LQ  ++ NMVA+   +P    +I IL  ++A + +VV R + + LN
Sbjct: 300 NVQNTLNYLYKNTDLQKNYNYNMVAIKDKRPVLMGVIEILDGYIAHQIDVVTRSSIHDLN 359

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KA +R H++ GL  A++ LDEVV+ IR S +   A+  L+++                  
Sbjct: 360 KANERKHIVEGLIKAISILDEVVKTIRQSKDKSDAKNNLIEK------------------ 401

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      SE Q  AI+ L+L RLT      + NE   L   I    +IL+S   L 
Sbjct: 402 --------YGFSEKQAEAIVMLQLYRLTNTDIVTLENENKELDNRIAYLNNILNSDEVLR 453

Query: 499 GIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +I  +L  +K +   PR ++I +    + ++++  I+ ED+ V+++  GY+KR+     
Sbjct: 454 KVIIDQLKGIKKKYPMPRLSKIRDEVQEIKIDEKAMILSEDINVSITRDGYIKRISNRSI 513

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
           +A             ++ D++  ++  +T   +L F+  G      V ++     +  GK
Sbjct: 514 KASEG-----IPFGKKENDYLVSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGK 568

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            +  ++ LN GE+I   +   +       LYV+ ATK 
Sbjct: 569 HVSYLVKLNAGEKIIGTILVKDFNL---PLYVMLATKK 603



 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D ++++        +    +  + +     R +  D  +    K        I +
Sbjct: 419 RLTNTD-IVTLENENKELDNRIAYLNNILNSDEVLRKVIIDQLKGIKKKYPMPRLSKIRD 477

Query: 788 ERCQELKLKEQFILT------VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
           E  +    ++  IL+      ++  G+ KR S       NRS K        K  E   L
Sbjct: 478 EVQEIKIDEKAMILSEDINVSITRDGYIKRIS-------NRSIKASEGIPFGKK-ENDYL 529

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEI-----RIASRATKGVVIFSTAKDERVVSVER 896
           V+++  N  D ++L +D G  + +PV++I     + A +      +      E+++    
Sbjct: 530 VSMYQANTLDHLLLFTDAGNYLFIPVHKIEEFKWKDAGKHVS--YLVKLNAGEKIIGTIL 587

Query: 897 IRE 899
           +++
Sbjct: 588 VKD 590


>gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 751

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 380/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLSEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L    +++        ++N +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQNWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
            C  L   +   +  S+ G+G      D +  N++GK + +           ++   PV 
Sbjct: 590 ECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSL-----PGGAKVILPRPVA 644

Query: 849 DNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           D +Q  +  V+ +G L+   V+++    +  KG  I      ERV S
Sbjct: 645 DREQNWLAAVTTEGRLLVFKVSDLPQLGK-GKGNKIIGI-PGERVAS 689


>gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis]
          Length = 435

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/458 (47%), Positives = 307/458 (67%), Gaps = 27/458 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                               SE Q  AILELRL +LTG
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTG 434


>gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 752

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 379/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 750

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 246/752 (32%), Positives = 385/752 (51%), Gaps = 68/752 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +G+    +++ ++ +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ + 
Sbjct: 6   NFNSEGLERRPMSEYVEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKASA 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA
Sbjct: 66  KYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSAD-DPKSFAA 124

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ T ++RPN+D +  EP +L AR PNVL+NG  GIAVGMA
Sbjct: 125 MRYTESKLSKYADALLSELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIAVGMA 184

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL EVV  C+ ++DNP  D+  LME I+ PD+PT   +I  +  I+N Y TGRG
Sbjct: 185 TDIPPHNLNEVVSACLHMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYETGRG 244

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R + H E        I+VT +P+Q + + +LE+IA  +R K++  + DLRDESD +
Sbjct: 245 SIKMRAIWHREDGD-----IIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDESDHE 299

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+VI  +      D +++ L+    L+  + VN+  +    KP    L  I+K ++ 
Sbjct: 300 NPTRLVITPRSNRVDVDALMDHLFATCDLERSYRVNLNIIGINGKPGVMNLRQIIKDWLL 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR +V  RR  Y L K   R H+L GL IA  N+DEV+ +IR    P+ A          
Sbjct: 360 FRTDVTRRRLSYRLEKVDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPA---------- 409

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS++Q   IL+ +L +L  L    IR E + L  E
Sbjct: 410 -------------------LIARFGLSDIQAEYILDTKLRQLARLEEFKIRAEQDELAKE 450

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E   IL S +RL  ++K+EL +  +E    RR+ +V         ++D +  E + V 
Sbjct: 451 KAELELILGSETRLKTLVKKELKAAAEEFGDERRSPLVARGEASAFNEKDLLTAEPITVV 510

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++        R  +      + +  +  D         ++ +V    S+G  Y  
Sbjct: 511 LSDKGWI--------RGAKGHDIDPTTLSYKSGDKFLSAACGRSNQNVFLQDSVGRFYAL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    + +G+     L++  G   T ++         ++  V+  T  G     K
Sbjct: 563 GGHTLPSA--RGQGEPATGRLNVASGALFTDVI------MGADDQKVLLGTDAGYGFIGK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRN 720
           + D    NR+GK  + L    +ILS +     N  I   +  G+ + FPI+ +   A   
Sbjct: 615 IGDLYTKNRAGKAVVSLPKGAKILSPKMVNDANALIAAVSNEGRLLVFPIAELPELA--R 672

Query: 721 SVGVRGISL------AKGDQVISMAIVLHADA 746
             G + I++      A+ + VI   ++   D+
Sbjct: 673 GKGNKIINIPGSRLQAREEFVIDYGVISEGDS 704



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 71/179 (39%), Gaps = 15/179 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+ +S A        + +      +      L S   +   +    +   G +  + 
Sbjct: 533 KSGDKFLSAACGRSNQNVFLQDSVGRFYALGGHTLPSARGQGEPATGRLNVASGALFTDV 592

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   +Q +L  ++ G+G      D    NR+GK + +       +   +++   VND
Sbjct: 593 I--MGADDQKVLLGTDAGYGFIGKIGDLYTKNRAGKAVVSL-----PKGAKILSPKMVND 645

Query: 850 NDQII-LVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
            + +I  VS++G L+  P+ E+   +R  KG  I +       A++E V+    I E +
Sbjct: 646 ANALIAAVSNEGRLLVFPIAELPELAR-GKGNKIINIPGSRLQAREEFVIDYGVISEGD 703


>gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 752

 Score =  538 bits (1386), Expect = e-150,   Method: Composition-based stats.
 Identities = 238/732 (32%), Positives = 379/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591]
 gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591]
          Length = 758

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/761 (31%), Positives = 385/761 (50%), Gaps = 75/761 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDMT-------HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    +A+ID PD  L+AL+  ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  I 
Sbjct: 233 RKMYESGRGSVRMRAVWKKEDG-----SVVITALPHQVSGARVLEQIASQMRAKKLPMID 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++AFR + V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 REILTEWLAFRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMAKFGLSDTQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  ++  ++K+E+          RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAYGDDRRSPLHERGEAKAMSEHDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 SPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++       + +N  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGATIEQVL------MAADNQRLLLAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR GK  + L     +L        +  +L  T  G+ + FP++
Sbjct: 603 DAGYGFICTFADLVARNRVGKAVLTLPDHARVLPPLELQRDDELLLTITAAGRLLLFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
            +   +     G + +S+      +  D+++ +  +    +
Sbjct: 663 DLPALS--KGKGNKIVSIPAAQLASGDDRILWLMTIAPQSS 701



 Score = 42.5 bits (98), Expect = 0.39,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR GK +         +   ++    +  +D+
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTL-----PDHARVLPPLELQRDDE 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           ++L ++  G L+  PV ++   S+  KG  I S       + D+R++ +  I   
Sbjct: 646 LLLTITAAGRLLLFPVADLPALSK-GKGNKIVSIPAAQLASGDDRILWLMTIAPQ 699


>gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004]
 gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004]
          Length = 751

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 246/739 (33%), Positives = 375/739 (50%), Gaps = 69/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNSAKFKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EVV   VA++DNP+  LD +ME I+GPD+PT   +I  +  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E+++     +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYKNGRGSVRMRAVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  K      + ++N L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDNRPNVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR E V  R  Y L K   R H+L GL  A  ++DEV++IIR    P+   
Sbjct: 348 VEILSEWLVFRRETVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFELTETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL S  +L  ++K+E+++  +     RR+ + E      M D D 
Sbjct: 439 GEQDGLAKERDKLQAILGSERKLSTLLKKEIIADAENYGDHRRSPLKERSEAKAMSDHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 LPSEPITVVLSEMGWV--------RSAKGHEIDPAGLNYKSGDSFRSAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    Q        +L+L  G              +      + A+
Sbjct: 551 DTTGRSYSVDPLDLPSARGQGEPL-TGKLLALPAGA------SIEHLLIAKEEQKFLMAS 603

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       SD I  NR+GK  + L    +++     T E D  +L  TK G+ + FP+
Sbjct: 604 DAGYGFICTFSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLLAITKEGRMLMFPV 663

Query: 711 SAIRVFAGRNSVGVRGISL 729
           + +   +     G + +S+
Sbjct: 664 ADLPQLS--KGKGNKIVSI 680



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 20/191 (10%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   S A                 +      L S   +    
Sbjct: 515 RSAKGHEIDPAGLNYKSGDSFRSAARGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                ++    S E     K +++F L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 575 TGKLLALPAGASIEHLLIAKEEQKF-LMASDAGYGFICTFSDLIAKNRAGKALITLPENA 633

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                    +   N+ D ++L ++ +G ++  PV ++   S+           K  ++VS
Sbjct: 634 KVMQ----PLEITNEQDDMLLAITKEGRMLMFPVADLPQLSK----------GKGNKIVS 679

Query: 894 VERIRESEIVD 904
           +   + +   D
Sbjct: 680 IPAAQAASGED 690


>gi|313635483|gb|EFS01722.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 722

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 285/719 (39%), Positives = 424/719 (58%), Gaps = 33/719 (4%)

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGM
Sbjct: 1   AMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGM 60

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ATNIPTH+LGEV+DG +A+ ++PDI +  LME I GPDFPT  +I+GR+GI+ AY +GRG
Sbjct: 61  ATNIPTHHLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIMGRSGIRRAYESGRG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR 
Sbjct: 121 SITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRS 180

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R  SA VI+N L++ T+LQ+ F +NM+AL    P+   L  IL  ++  ++
Sbjct: 181 GMRIVIEVRRDISASVIVNNLFKMTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQK 240

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT++ L KA  RAH+L GL IA+ N+D ++++IR S   + A+  LM +      
Sbjct: 241 VVIRRRTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ------ 294

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q +AIL++RL RLTGL R+ I  E  +L   I +
Sbjct: 295 --------------------FNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 334

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHL 545
              IL+   R+L II++EL  +K +    RRT I+ G L   EDED I  E++ +T++  
Sbjct: 335 LKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKR 394

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           GY+KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + 
Sbjct: 395 GYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYE 454

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F
Sbjct: 455 VPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDNYLFFTTKHGVVKRTTLSQF 511

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +I +SG  A++L   DE++SV+      ++++ TK GQ + FP + IRV  GR + GVR
Sbjct: 512 AKIRQSGLRAVELRENDELISVQMTDGNKNMIIATKHGQSIYFPEANIRVM-GRTAAGVR 570

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           GI L +GD+VI M ++   +             +   +    +   +       + +   
Sbjct: 571 GIRLREGDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGN 630

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                     ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 631 LVAMKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 687



 Score = 85.6 bits (210), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 99/240 (41%), Gaps = 24/240 (10%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 266 IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 316

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 317 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 376

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 377 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 433

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 434 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 491


>gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z]
 gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z]
          Length = 750

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 234/736 (31%), Positives = 374/736 (50%), Gaps = 62/736 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL E+ D  V ++DNP   LD L+ +++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   E        IV+T +P+Q + + + ++IA+ +  K++  + D+RDE+D++
Sbjct: 242 SVKMRAVWKKEDGE-----IVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDEADQE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      D ++N L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPVRLVIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILTEWLQ 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+T           
Sbjct: 357 FRRATVTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKT----------- 405

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L   +++ E   L  E
Sbjct: 406 ------------------VLMARFKLSDEQAEAILNLRLRHLAKLEETELKAEKARLEEE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
            +    ILSS  RL  +IK+E+        + RR+ +VE      + + + +  E + V 
Sbjct: 448 RQHLEQILSSERRLNTLIKKEIQQDAKTYASTRRSPLVEREEAKAISETEMMPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++   +F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDVQNLNYKAGDKYLAHAYGKSNQPAVFIDSSGRSYAV 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  +  ++          N  ++ A+  G     +
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPAGASMEQVL------IENENQPLLMASDAGYGFICQ 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +       +LL  T  G+ + FP+  +   +   
Sbjct: 612 FEDLIARNKAGKAVLTLPENAKVLPPKIIKNSTALLLALTHAGRMLMFPVQELPSLS--K 669

Query: 721 SVGVRGISLAKGDQVI 736
             G + I +   D  +
Sbjct: 670 GKGNKIIGIPAADAKV 685


>gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454]
 gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica
           HKI 454]
          Length = 778

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 253/793 (31%), Positives = 381/793 (48%), Gaps = 75/793 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +         G   +++ D  + +YL YA++V+  RA+P++ DG KPV RRIL+ M
Sbjct: 1   MSEELELDFSPPSDG-EYLTLGDYAERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  + K VK AR+ G+V+GKYHPHG+++ Y+AL R+AQD+S+R  LI+GQGNFGS 
Sbjct: 60  HEMGLAADAKPVKSARVVGDVLGKYHPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LLD++ + TVDF PNYDGSF+EP  L  R P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAQLLLDEIDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKN 239
           GIAVGMAT +P HNL EV    + +I NP++D  ALME I GPDFP G  I+     I  
Sbjct: 180 GIAVGMATEVPPHNLREVAQAAIELIRNPNLDHAALMERIPGPDFPGGGQIISSPAEIAA 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGS+ +R    IE+ +  + Q+V+TE+P   +   +LE+I EL   K  +    L
Sbjct: 240 AYESGRGSLKVRARWKIEELARGQWQLVITELPPGTSSQKVLEEIEELTNPKVKLGKKTL 299

Query: 300 RDE-------------------SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
             E                         R+V+E K         +N L  YTSL+S   +
Sbjct: 300 TPEQLQTKQSLLALLDAVRDESGKDSPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAPI 359

Query: 340 NMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ +R   V RRT++ L+K +DR H+L G  I   NLD
Sbjct: 360 NLVMIGADGRPRQKGLGEILREWIGYRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNLD 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+RIIR S  P+ A                                   LS+ Q   IL
Sbjct: 420 EVIRIIRESDEPKAA-----------------------------LIAAFGLSQRQADDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L +  I  EL  L  E      +L S   +  +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEKIKIEKELGELRDEKARLEQLLGSDVAMKRLIIKEIEADAKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I +       E  +V E + V VS  G+V        R  +  G   SG   +  D + 
Sbjct: 511 LIQQDKRA-TFEARVVDEPVTVVVSQRGWV--------RTLKGHGLDASGFTFKAGDSLY 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P 
Sbjct: 562 AAFQCRTPDTLIAWGSNGRVYSVPVAALPGGRGD--GVPVTSLIELEAGTHLMHYFAAPL 619

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDIL 697
           ++       ++ A+ +G     ++ D I   ++GK  M +D+  + L+      + + + 
Sbjct: 620 EQP------LLLASSNGFGFIARIGDMISRVKAGKSFMTIDAGAQPLAPMPMWPDASQVA 673

Query: 698 LTT----KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
                     + + F +  ++  +     GV  I L   +Q++    +  A         
Sbjct: 674 CLALGAKDETRLLVFGLDEMKTLSS-GGRGVTLIGLDGNEQLLQALAIGQAGLLLSGAGR 732

Query: 754 YMKHMSAQRRLIS 766
             K    +    +
Sbjct: 733 GGKPQQQRLVGDA 745


>gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
 gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC
           25976]
          Length = 748

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/745 (32%), Positives = 388/745 (52%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+V+  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GSI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 241 KGSIKMRAVWKKEDGE-----IVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      + +++ L+  T L+  + VNM  +    KP    L  IL  +
Sbjct: 296 HENSIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +AFR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA        
Sbjct: 356 LAFRRTTVRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTA-------- 407

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AIL LRL  L  L   +++ E + L 
Sbjct: 408 ---------------------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ 
Sbjct: 447 KERDELQLTLGSERRLNTLIKKEIQADAKVFASPRRSPLVERAEAKAISESDLTPTEDVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y
Sbjct: 507 VILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G    
Sbjct: 559 ALDPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +
Sbjct: 611 CSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      +G+++++
Sbjct: 671 --KGKGNKIINISAPAAKEGNELLA 693



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD       + HA    ++ + ++        L         S
Sbjct: 516 RCAKGHDIDVQGLSYRAGD-----GYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARS 570

Query: 775 LKNDSSVEGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                + +  + +    +   +   +  +L  S+ G+G   S  D    N++GK + +  
Sbjct: 571 QGEPLTGKITLPDGATVQQVLMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLT 630

Query: 832 VSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
            +       L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 631 ENAKVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 748

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/745 (32%), Positives = 386/745 (51%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GSI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 241 KGSIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      + +++ L+  T L+  + VNM  +    KP    L  IL  +
Sbjct: 296 HENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA        
Sbjct: 356 LVFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA-------- 407

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AIL LRL  L  L   +++ E + L 
Sbjct: 408 ---------------------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ 
Sbjct: 447 KERDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y
Sbjct: 507 VILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G    
Sbjct: 559 ALDPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +
Sbjct: 611 CSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      +G+++++
Sbjct: 671 --KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  +G   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 576 TGKITLPDGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 634 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
 gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2]
          Length = 742

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 249/769 (32%), Positives = 388/769 (50%), Gaps = 60/769 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S      +GI   S+    + +YL YA+ VIL RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSQQMINYEGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  L++GQGN+GSVD DP 
Sbjct: 61  KSTAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSVD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE +L K +  LL++  + TVD+ PN+DGS  EP VL AR P+VL+NG  GIA
Sbjct: 120 SFAAMRYTEAKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGTSGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK-NAYA 242
           VGMAT+IP HNL EVV+ CVA++DN ++    L E + GPD+P  A+++     +   Y 
Sbjct: 180 VGMATDIPPHNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYE 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TG GSI  R    +E+       +V+  +P+QV+ A +LE+IA  +R K++  + DLRDE
Sbjct: 240 TGSGSIRQRANYFVEEGVN----VVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDE 295

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           SD +   R+V+EL+      +  +  L+  T L+  + VN+  +    +P+  +L  +L 
Sbjct: 296 SDHENPIRLVVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSLKTMLT 355

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            ++ +R E V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P   +  LM+
Sbjct: 356 EWLVYRTETVRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKP---KPVLME 412

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+ Q  A+LEL+L +L  L    IR E   
Sbjct: 413 R--------------------------FGLSDTQAEAVLELKLRQLAKLEEMRIRGEQEE 446

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVRED 537
           L  E K+   IL S +R+  ++K+ELLS  +     RR+ + +      M ++D +  E 
Sbjct: 447 LEAERKKIEKILGSAARMKTLVKKELLSDAEAYGDDRRSPLSDAKQAQAMSEQDLLPSES 506

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G+V        RA +        +  +  D      +  +    +F    G 
Sbjct: 507 ITVVLSENGWV--------RAAKGHDVDGRTLGYKSGDAFCSQALGQSRQLSVFLDDTGR 558

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP    ++ G+ L   LS   G +   +M              V A+  G  
Sbjct: 559 AYSLPAHSLPSA--RSHGEPLTGRLSPASGAKFKQVML------GQPKEQYVLASSAGYG 610

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
              +L +    N++GK A+ L    E+L+      EN +++ T   + + F +S + V +
Sbjct: 611 FITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVMVVTDEPRMLVFEMSELPVLS 670

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
                G + + + KG  V ++               Y K   A     +
Sbjct: 671 --KGKGNKLMQMPKGVSVKAIFAFKPGQKVEVVAGKYSKSFGATAIEEA 717



 Score = 44.4 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 69/180 (38%), Gaps = 12/180 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G +L    GD   S   +  +           +  S     +         
Sbjct: 518 RAAKGHDVDGRTLGYKSGDAFCS-QALGQSRQLSVFLDDTGRAYSLPAHSLPSARSHGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S       ++    + KEQ++L  S  G+G  T   +    N++GK   A  + K
Sbjct: 577 LTGRLSPASGAKFKQVMLGQPKEQYVL-ASSAGYGFITELENLYSKNKAGK--AAISLPK 633

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +    L+A   V   + +++V+D+  ++   ++E+ + S+  KG  +    K   V ++
Sbjct: 634 GS---ELLAPARVEAENWVMVVTDEPRMLVFEMSELPVLSK-GKGNKLMQMPKGVSVKAI 689


>gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 748

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/739 (30%), Positives = 372/739 (50%), Gaps = 59/739 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++S   + + I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 1   MTSLSSDIENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILKAFV 362
               R+V+E K R     ++++ L+  TSL++  S+NM  L+ +       L  +LK ++
Sbjct: 301 E-NIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P++          
Sbjct: 360 AHQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKS---------- 409

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q  AIL +RL  L  L   +I  E +SL  
Sbjct: 410 -------------------VMIAEFKLSDRQAEAILNMRLRALKRLEEAEITAERDSLKE 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVR 535
           E      ++ S +     +K +L +++           R+T I E         +  I R
Sbjct: 451 ERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGARQTLIEEQTPAKAIPLDAMIER 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E M V +S  G+++ +            K    +  ++ D    +    T   +L  +  
Sbjct: 511 EPMTVVLSKRGWIRGLK------GHVDLKSTEAMRFKEGDEADFICHAYTTDRLLIATED 564

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y     RLP G     G+ +  +L ++   +I  ++P            ++  +  G
Sbjct: 565 GRFYTLLADRLPGGRGF--GEPVRLMLDISNDTKIMALLPLN------PEGKLLVVSSSG 616

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAI 713
                ++++ +   R GK  +++   DE L V        + I L  +  + + FP+S I
Sbjct: 617 RGFITQMTNLVAETRKGKQIVRVKK-DEYLMVLKVIEEDHDHIALIGENRKLLAFPLSQI 675

Query: 714 RVFAGRNSVGVRGISLAKG 732
              A     GV+      G
Sbjct: 676 PELA--KGSGVQLQRYRGG 692



 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 9/164 (5%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +   +GD+  +  I      D                                    N 
Sbjct: 537 AMRFKEGDE--ADFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISND 594

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           ++         E  +L VS  G G  T   +     R GK      + ++ +   L+ + 
Sbjct: 595 TKIMALLPLNPEGKLLVVSSSGRGFITQMTNLVAETRKGK-----QIVRVKKDEYLMVLK 649

Query: 846 PVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            + ++ D I L+ +   L+  P+++I   ++ + GV +      
Sbjct: 650 VIEEDHDHIALIGENRKLLAFPLSQIPELAKGS-GVQLQRYRGG 692


>gi|162950918|gb|ABY21498.1| ParC [Shigella boydii]
          Length = 657

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 233/703 (33%), Positives = 366/703 (52%), Gaps = 60/703 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657



 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 12/154 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPV 867
             E   ++    + D +D ++ ++  G ++  PV
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657


>gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis]
          Length = 434

 Score =  538 bits (1385), Expect = e-150,   Method: Composition-based stats.
 Identities = 216/458 (47%), Positives = 307/458 (67%), Gaps = 27/458 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG   IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMATNI
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGE+++  + V+ N    ++ ++E++ GPDFPTG +I G  GI++ Y TGRG + +
Sbjct: 183 PPHNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRL 242

Query: 251 RGVSHIEKTSGDR-EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           R   H+E+ S  + E I++TE+PY VNK+ ++E+IAEL+ EK +  I+D+RDESD+ G R
Sbjct: 243 RARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIR 302

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           VV+ELK+G S++V++N+LY++T +Q  F  NM+AL+   P    +  ++ A++  R +V+
Sbjct: 303 VVLELKKGESSEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVI 362

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT+Y LNKA  RAH+L G   A++ +DEVV+ IR S N E A+++L++          
Sbjct: 363 RRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE---------- 412

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                               SE Q  AILELRL +LTG
Sbjct: 413 ----------------LFSFSEAQALAILELRLYQLTG 434


>gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM
           4541]
 gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541]
          Length = 751

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/762 (31%), Positives = 379/762 (49%), Gaps = 76/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +L   TVD+ PN+DG+  EP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA+++ P ++LD +M+ I GPD+PT   +I     I
Sbjct: 173 TTGIAVGMATDIPPHNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  +      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILNEWITYRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFNISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  E   IL S +RL  +IK+E+ +        RR+ + E        + + 
Sbjct: 439 GEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAYGDDRRSPLQEREEAKALSEHEI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R+ +      S +  +  D   +     ++ + +F 
Sbjct: 499 LPSEPITVVLSDMGWV--------RSAKGHDIEPSNLSYKAGDSFKEAARGKSNQAAVFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    +++G+ L   L+L  G  I  ++       +      + A+
Sbjct: 551 DSTGRSYSVDPLELPSA--RSQGEPLTGKLTLPPGATIEHVL------MAPEEQKYLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L    ++LS      E +  +L  TK G+ + FP+
Sbjct: 603 DAGYGFICTFNDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLAITKAGRMLLFPV 662

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
           S +   +     G + I++      +  D ++ + +V    A
Sbjct: 663 SNLPQLS--KGKGNKIINITGAQAASGEDLLVWLMVVPPQSA 702



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +EQ  L  S+ G+G   +  D    N++GK + +   +       L  +   N+ + 
Sbjct: 591 MAPEEQKYLMASDAGYGFICTFNDLVTKNKTGKALISLPENAK----VLSPIELNNEKED 646

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           ++L ++  G ++  PV+ +   S+  KG  I +       + ++ +V +  +   
Sbjct: 647 LLLAITKAGRMLLFPVSNLPQLSK-GKGNKIINITGAQAASGEDLLVWLMVVPPQ 700


>gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 770

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 231/756 (30%), Positives = 369/756 (48%), Gaps = 66/756 (8%)

Query: 1   MTEHIISSDEEEE-KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M     + DE +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ 
Sbjct: 1   MASDTPTRDEPDPFDAIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q+ ++    + K AR+ G+V+GKYHPHG+A++YDA+ R+AQD++LR  L+EGQGNFG+
Sbjct: 61  MRQLRLDPTGAFKKSARVVGDVIGKYHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGN 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +DGD  AA RYTE RL   A  L+  L + TVDF P Y+G   EP +    +PN+L NG 
Sbjct: 121 IDGDNAAAYRYTEARLTATAARLMAGLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGS 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIK 238
            GIAVGMAT+IP+HN+ E+VD  + +IDNP ++   LM +  GPDFPTG V++     I 
Sbjct: 181 TGIAVGMATSIPSHNVAEIVDATLMLIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAIS 240

Query: 239 NAYATGRGSIVIRGVSHI-------------EKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           +AY  G+G+I +RG                 EK    + Q+V++EIPY V K  ++E+IA
Sbjct: 241 SAYEVGKGAIRVRGRFSTGRDEAGEWEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIA 300

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
            L+ +K++  + D+RDESD     V++   R    D++   LYR T L+S FS+N+  L+
Sbjct: 301 ALIADKKLPILEDVRDESDEHIRIVLVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLD 360

Query: 346 GYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
             +      L  IL+ +V  + +++VRR+++ L+K   R  +L G  IA  NLD ++ II
Sbjct: 361 ARRTPGVLGLKQILQEWVIAQIDILVRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEII 420

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
           R    P+                                     L++ Q  AIL +RL  
Sbjct: 421 RTEDEPK-----------------------------PVMMAEFGLTDRQAEAILNMRLRS 451

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTR 519
           L  L   ++R E ++L  E  E   +L + +R    +K++L +++ E         RRT 
Sbjct: 452 LRKLEEMELRRERDALLAEQDELTKLLENPARQRTRLKRDLAALRKEYGPDTALGRRRTT 511

Query: 520 IVE--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           I E     +   +  I +E + V +S  G+++     V       G+       ++ D  
Sbjct: 512 IAEAAPTREFSMDAMIEKEPVTVILSQRGWIRAAKGHVPLGTDGKGEDF---KFKEGDGP 568

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T   +L     G  Y     +LP       G+ +  +L ++   ++  I P  
Sbjct: 569 AFAFHAQTTDKLLIAIDNGRFYTLGADKLPGARGF--GEPIRTVLDIDPNGQVVAIFP-- 624

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDI 696
                 +   ++ A  +G     ++ + +   R G+  +       +  V     + + +
Sbjct: 625 ----WRHGGQLLLAANNGRGFVAEMDELLAETRKGRGVVSTKPGVHLAVVREIAPEHDHV 680

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +  +  + V F +S + V       GV       G
Sbjct: 681 AVVGENRKLVIFALSEMPVLG--KGQGVTLQRYKDG 714


>gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
 gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34]
          Length = 758

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 244/739 (33%), Positives = 384/739 (51%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  V +I+NP  DLDALME ++GPD+PT   +I  +  +
Sbjct: 173 VTGIAVGMATDIPPHNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y +GRGSI +R V H E        IV+T +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 KKVYKSGRGSIRMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  F  N+  L    +P+   L
Sbjct: 288 DLRDESDHENPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ +R   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P   +
Sbjct: 348 VEIIAEWLEYRRTTVRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIRNEEDP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            E M R                            LS +Q  AILE++L +L  L    IR
Sbjct: 405 AEFMSR--------------------------FGLSAIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +L S  RL  +IK+E+L+  ++    RR+ +VE        + D 
Sbjct: 439 AEQDELAKEREQLEKLLGSERRLNTLIKKEILADAEKYGDDRRSPLVEREEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      S +  +  D         ++   +F 
Sbjct: 499 IPSEAITVVLSEKGWI--------RHAKGHEVDPSSLNYKSGDSYLAHARGKSNLPAIFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  +  ++   +D+        + A+
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPITGRLNLTPGTNMRQVLMAEDDQIW------LMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +     +L  +       + IL  T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +   +Q  L  S+ G+G    S D    N+SGK +     +        VA  
Sbjct: 584 TNMRQVLMAEDDQIWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADI 643

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              +NDQI+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 644 ---ENDQILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 748

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 227/739 (30%), Positives = 372/739 (50%), Gaps = 59/739 (7%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++S   + + I+  +    +   YL YA++ I  R++PD+RDGLKPV RR+L+ M  + +
Sbjct: 1   MTSLSSDIENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    Y KCAR+ G+V+GKYHPHG+ ++YDA+ R+AQD++LR  L++GQGNFG++DGD  
Sbjct: 61  DPASAYKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL  AA+ L++ + +  VDFRP Y+   +EP      +PN+L NG  GIAVG
Sbjct: 121 AAMRYTEARLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATG 244
           MAT+IP HN+ E++D    +ID+P+ +   L+  ++GPDFPTG  I+     I++AY TG
Sbjct: 181 MATSIPPHNVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGS  +R    +E        IV+ EIP+Q+ K+ ++E+IA L+ EK++  ++D+RDESD
Sbjct: 241 RGSFRVRARYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESD 300

Query: 305 RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF-TLIGILKAFV 362
               R+V+E K R     ++++ L+  TSL++  S+NM  L+ +       L  +LK ++
Sbjct: 301 E-NIRIVLEPKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWL 359

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
           A +  ++ RR ++ L +  DR  +L G   A  NLD V+ IIR   +P++          
Sbjct: 360 AHQFAMLQRRCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKS---------- 409

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     LS+ Q  AIL +RL  L  L   +I  E +SL  
Sbjct: 410 -------------------VMIAEFKLSDRQAEAILNMRLRALKRLEEAEITAERDSLKE 450

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED--EDCIVR 535
           E      ++ S +     +K +L +++           R+T I E         +  I R
Sbjct: 451 ERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGARQTLIEEQTPAKAIPLDAMIER 510

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           E M V +S  G+++ +            K    +  ++ D    +    T   +L  +  
Sbjct: 511 EPMTVVLSKRGWIRGLK------GHVDLKSTEAMRFKEGDEADFICHAYTTDRLLIATED 564

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  Y     RLP G     G+ +  +L ++   +I  ++P            ++  +  G
Sbjct: 565 GRFYTLLADRLPGGRGF--GEPVRLMLDISNDTKIMALLPLN------PEGKLLVVSSSG 616

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSV--ETCTQENDILLTTKLGQCVRFPISAI 713
                ++++ +   R GK  +++   DE L V        + I L  +  + + FP+S I
Sbjct: 617 RGFITQMTNLVAETRKGKQIVRVKK-DEYLMVLKVIEEDHDHIALIGENRKLLAFPLSQI 675

Query: 714 RVFAGRNSVGVRGISLAKG 732
              A     GV+      G
Sbjct: 676 PELA--KGSGVQLQRYRGG 692



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 51/164 (31%), Gaps = 9/164 (5%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            +   +GD+  +  I      D                                    N 
Sbjct: 537 AMRFKEGDE--ADFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISND 594

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           ++         E  +L VS  G G  T   +     R GK      + ++ +   L+ + 
Sbjct: 595 TKIMALLPLNPEGKLLVVSSSGRGFITQMTNLVAETRKGK-----QIVRVKKDEYLMVLK 649

Query: 846 PVNDN-DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
            + ++ D I L+ +   L+  P+++I   ++ + GV +      
Sbjct: 650 VIEEDHDHIALIGENRKLLAFPLSQIPELAKGS-GVQLQRYRGG 692


>gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617]
          Length = 758

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/738 (31%), Positives = 373/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++         + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    + +ID+P   LD L++I++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDES+ +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESNHENPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILSEWLIFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE+Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFDISEIQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDC 532
            E + L  E      IL+S  ++  ++K+EL +  D     RR+ + E        + + 
Sbjct: 439 GEQDELEKERAHLEAILASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHEL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + + +S  G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 IPSEPVTIVLSQSGWV--------RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   +     ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGAVVEQVLMADETQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPIS 711
             G       S+ +  NR+GK  + L S  ++++     + ++ +L  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVS 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 ELPQLS--KGKGNKIVSI 678



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  +  A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    +  + Q +L  S+ G+G   +  +    NR+GK +       
Sbjct: 575 TGKLTPPPGAVVEQVL--MADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 ++    +  ND ++L ++  G ++  PV+E+   S+           K  ++VS
Sbjct: 629 -PSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVSELPQLSK----------GKGNKIVS 677

Query: 894 VERIRESEIVD 904
           +     +   D
Sbjct: 678 IPSAEAASGED 688


>gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
 gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40]
          Length = 748

 Score =  537 bits (1384), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 382/762 (50%), Gaps = 74/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE  +  D EE+     + +    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTESTVVYDAEEQ-----IPLKQFSEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKSTAKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQ 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   +  LL +LG+ TVD++PN+DG+  EP VL A+ P VL+NG
Sbjct: 116 D-DPKSFAAMRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL E+V+  + +++NP+  +  L E + GPD PT   +I  R  I
Sbjct: 175 TTGIAVGMATDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDI 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TG+GS+ +R +   E         V+T +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 235 IKMYETGKGSLKMRAIWTKEGNDA-----VITALPHQVSGAKILEQIAAQMQAKKLPMVA 289

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + VN+  +    +P   +L
Sbjct: 290 DLRDESDHENPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGINGRPGVRSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  +++FR   V RR ++ L+    R H+L    IA  NLDEV+ I+R    P   R
Sbjct: 350 DKILGDWLSFRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKP---R 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LMQR                            L+E Q   IL+ RL +L  L    IR
Sbjct: 407 EVLMQR--------------------------FDLTEEQANYILDTRLRQLARLEEMKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDC 532
            E + L  E       L S   +  +IK+++L V  E    RR+ IV         ++  
Sbjct: 441 GEQDELQKERDTIEKTLGSARMMKTLIKKDMLQVLKEHGDERRSPIVTREESQAFSEDQL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        R+ +      + +  +  D         ++ SV+  
Sbjct: 501 LTSEPVTVVLSEKGWI--------RSAKGHEMDPASLSYKAGDEFKFASRGKSNQSVILI 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ +   L+   G  I  ++          +  V+ A+
Sbjct: 553 DSTGRSYALAAHTLPSA--RGQGEPVTGRLNPPSGATIEGML------MGSEDQRVLLAS 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G     KL D +  N++GK A+ L    E+L        ++  +   +  G+ + F +
Sbjct: 605 DAGYGFVGKLGDLVSKNKAGKAALTLPKGAEVLPPTVIEDLDNTWLAAFSNEGRLLVFKV 664

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           + +   A     G + I++         + VI++A+V  +D 
Sbjct: 665 TELPELA--RGKGNKIINIPSARVQNREEFVIALAVVQASDT 704



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 24/236 (10%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVGV----RGISLAKGD 733
             DE  S     +E+     ++       P++ +    G  R++ G       +S   GD
Sbjct: 478 HGDERRSPIVTREESQ--AFSEDQLLTSEPVTVVLSEKGWIRSAKGHEMDPASLSYKAGD 535

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +    +      +          +  A   L S   +        +   G   E     +
Sbjct: 536 EFKFASRGKSNQSVILIDSTGRSYALAAHTLPSARGQGEPVTGRLNPPSGATIEGML--M 593

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ- 852
             ++Q +L  S+ G+G      D    N++GK           +   ++    + D D  
Sbjct: 594 GSEDQRVLLASDAGYGFVGKLGDLVSKNKAGKAALTL-----PKGAEVLPPTVIEDLDNT 648

Query: 853 -IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
            +   S++G L+   V E+   +R  KG  I +        ++E V+++  ++ S+
Sbjct: 649 WLAAFSNEGRLLVFKVTELPELAR-GKGNKIINIPSARVQNREEFVIALAVVQASD 703


>gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 751

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/745 (32%), Positives = 386/745 (51%), Gaps = 68/745 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 5   STEINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 64

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   
Sbjct: 65  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSF 123

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 124 AAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 183

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G
Sbjct: 184 MATDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQG 243

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +GSI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD
Sbjct: 244 KGSIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESD 298

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      + +++ L+  T L+  + VNM  +    KP    L  IL  +
Sbjct: 299 HENPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEW 358

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA        
Sbjct: 359 LVFRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA-------- 410

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LSE Q  AIL LRL  L  L   +++ E + L 
Sbjct: 411 ---------------------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLE 449

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E  E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ 
Sbjct: 450 KERDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVT 509

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y
Sbjct: 510 VILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAY 561

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G    
Sbjct: 562 ALDPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFI 613

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +
Sbjct: 614 CSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS 673

Query: 718 GRNSVGVRGISL-----AKGDQVIS 737
                G + I++      +G+++++
Sbjct: 674 --KGKGNKIINISAQAAKEGNELLA 696



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 519 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 578

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  +G   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 579 TGKITLPDGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 636

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 637 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 684


>gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96]
 gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96]
 gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163]
          Length = 758

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 235/738 (31%), Positives = 373/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++         + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    + +ID+P   LD L++I++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAVQMRNKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDES+ +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESNHENPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILSEWLIFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE+Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFDISEIQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDC 532
            E + L  E      IL+S  ++  ++K+EL +  D     RR+ + E        + + 
Sbjct: 439 GEQDELEKERAHLEAILASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHEL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + + +S  G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 IPSEPVTIVLSQSGWV--------RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   +     ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGAVVEQVLMADETQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPIS 711
             G       S+ +  NR+GK  + L S  ++++     + ++ +L  T  G+ + FP+S
Sbjct: 603 DAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVS 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 ELPQLS--KGKGNKIVSI 678



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 66/191 (34%), Gaps = 22/191 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  +  A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    +  + Q +L  S+ G+G   +  +    NR+GK +       
Sbjct: 575 TGKLTPPPGAVVEQVL--MADETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 ++    +  ND ++L ++  G ++  PV+E+   S+           K  ++VS
Sbjct: 629 -PSNAKVMTPLAIQSNDDLLLAITAAGRMLMFPVSELPQLSK----------GKGNKIVS 677

Query: 894 VERIRESEIVD 904
           +     +   D
Sbjct: 678 IPSAEAASGED 688


>gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
 gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65]
          Length = 748

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 236/746 (31%), Positives = 393/746 (52%), Gaps = 67/746 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++   KY 
Sbjct: 8   EDGVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKAGSKYK 67

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 68  KSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 126

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K A  LL +LG+ TVD++PN+DG+  EP  L +R PNVL+NG  GIAVGMAT+I
Sbjct: 127 TESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGTTGIAVGMATDI 186

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV + C+ ++DNP  D + L++ I GPDFPT   +I  +  ++  Y +GRGS+ 
Sbjct: 187 PQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQKMYHSGRGSVK 246

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V   E        IV+T +P+Q + A +LE+IA+ +++K++  ++DLRDESD +   
Sbjct: 247 MRAVYTREDGD-----IVITALPHQASGAKVLEQIADQMQKKKLPMVSDLRDESDHENPT 301

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI-LKAFVAFRE 366
           R+VI  K      + +++ L+  T L+  + VN+  +      +   + + +K ++ +R 
Sbjct: 302 RLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGLPQVKSLDMIIKEWLEYRI 361

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L+K   R H+L GL +A  N+DEV+ IIR    P   ++EL++R      
Sbjct: 362 TTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEP---KQELIKR------ 412

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AILEL+L  L  L    I+ E + L  E  +
Sbjct: 413 --------------------FGLSDKQAEAILELKLRHLAKLEEMKIKGEQDELSKERDQ 452

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSH 544
               L S  RL  ++K+E+ +  +     RR+ IV         + D +  + + V +S 
Sbjct: 453 LEKTLGSERRLKTLVKKEITADAETYGDDRRSPIVSRDEAQALSEIDLMGADPVTVVMSE 512

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +      +G+  +  D         T+   +F  + G  Y   + 
Sbjct: 513 KGWI--------RAAKGHDVDGTGLQYKSGDKFLIQANAKTNQQAIFLDTGGRAYSVNIH 564

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    +  G+ +   ++L  G++I+T++          + Y+  A++ G     +  D
Sbjct: 565 GLPGA--RGYGEPVTGSINLASGQKISTMVI-----GQPKDQYL-MASEAGYGFITQYED 616

Query: 665 FIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            +        A+     D+ +         +++ ++  +  G+ + FP++ + V A    
Sbjct: 617 MVS-KNKAGKALLNKPDDKAIHSPVKVSDVEQDWVVAVSNEGRLLTFPVADLPVMA--KG 673

Query: 722 VGVRGISLA-KGDQV-ISMAIVLHAD 745
            G + I+L   GD+V I ++++   D
Sbjct: 674 KGNKIINLGTSGDEVLIGISLMKEGD 699



 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V G  L    GD+   +             +       +              
Sbjct: 517 RAAKGHDVDGTGLQYKSGDKF--LIQANAKTNQQAIFLDTGGRAYSVNIHGLPGARGYGE 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S    +  +     +   +   L  SE G+G  T   D    N++GK +       
Sbjct: 575 PVTGSINLASGQKISTMVIGQPKDQYLMASEAGYGFITQYEDMVSKNKAGKALLN-KPDD 633

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST--AKDERVV 892
                 +       + D ++ VS++G L+  PV ++ + ++  KG  I +   + DE ++
Sbjct: 634 KAIHSPVKVSDV--EQDWVVAVSNEGRLLTFPVADLPVMAK-GKGNKIINLGTSGDEVLI 690

Query: 893 SVERIRESE 901
            +  ++E +
Sbjct: 691 GISLMKEGD 699


>gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 748

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 238/743 (32%), Positives = 385/743 (51%), Gaps = 68/743 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+G
Sbjct: 183 TDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +
Sbjct: 243 SIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ 
Sbjct: 298 NPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLV 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA          
Sbjct: 358 FRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---------- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q  AIL LRL  L  L   +++ E + L  E
Sbjct: 408 -------------------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V 
Sbjct: 449 RDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVI 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y  
Sbjct: 509 LSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYAL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G      
Sbjct: 561 DPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFICS 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +  
Sbjct: 613 FEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS-- 670

Query: 720 NSVGVRGISL-----AKGDQVIS 737
              G + I++      +G+++++
Sbjct: 671 KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  +G   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 576 TGKITLPDGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 634 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           K40]
 gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           T1]
          Length = 751

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 378/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD     R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHDNPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLSEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L    +++        + N +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADRELNWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 751

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/747 (32%), Positives = 379/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLSEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSAIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L    +++        + N +   T  G+ + F +
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADRELNWLAAVTTEGRLLVFKV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ]
 gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ]
          Length = 752

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 234/738 (31%), Positives = 371/738 (50%), Gaps = 64/738 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++ + 
Sbjct: 6   DPGLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADA 65

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 66  KHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 124

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL + A  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG  GIAVGMA
Sbjct: 125 MRYTEARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMA 184

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T++P HNL EV   CV ++D P   +  L E I GPDFPT   ++  R  +   Y +GRG
Sbjct: 185 TDVPPHNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYESGRG 244

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           ++ +R +  +E        +V+T +P+QV+ A +LE+IA  ++ K++  +ADLRDESD +
Sbjct: 245 TLRMRALYRVEDGD-----VVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHE 299

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + ++  L+  T L++ + VN+  +    +P+   L  +L  ++ 
Sbjct: 300 NPCRIVIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDGRPQVKNLRALLSEWLE 359

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR ++ L+K   R H+L GL IA  NLDEV+RIIR    P+            
Sbjct: 360 FRVRTVRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPK------------ 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q   IL+ RL +L  L    IR E  +L  E
Sbjct: 408 -----------------PVLIERFALSEAQADYILDTRLRQLARLEEMKIRGEQEALAKE 450

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             + L +L S +RL  ++++ELL+  +     RR+ IVE        + + +  E + V 
Sbjct: 451 RDKLLGLLGSEARLKKLVRKELLADAETYGDARRSPIVERAEARALSETELLPTEPVTVV 510

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +      + +  +  D         ++   +F  S G  Y  
Sbjct: 511 LSEKGWV--------RCAKGHDIDPAALSYKSGDTFKAAAQGRSNQYAVFIDSSGRSYSL 562

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    + +G+ L   L+   G     ++         +    V A+  G     K
Sbjct: 563 AAHSLPSA--RGQGEPLTGRLAPPPGAGFECVLL------PDDEALYVLASDAGYGFVAK 614

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             D    N++GK  + L +   +++         + +   T  G+ + F ++ +   A  
Sbjct: 615 GEDLQAKNKAGKALLSLPAGARVMAPRPLGDAGSDWLAAVTSEGRLLLFRVAELPQLA-- 672

Query: 720 NSVGVRGISLAKGDQVIS 737
              G R I++  G +V S
Sbjct: 673 KGKGNRIIAI-PGARVAS 689


>gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum]
          Length = 755

 Score =  537 bits (1383), Expect = e-150,   Method: Composition-based stats.
 Identities = 240/755 (31%), Positives = 376/755 (49%), Gaps = 72/755 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I  +  E   I  V + + ++  YL YA++ I+ RA+PD RDGLKPVHRRIL+GM
Sbjct: 1   MGKRLIPPEPAE---IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL--IEGQGNFG 118
             + ++    + K A+I G+VMG +HPHG+ AIYDA+ R+AQD+S R  L  ++GQGNFG
Sbjct: 58  RLLRLDPGTAFKKSAKIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFG 117

Query: 119 SVDGDPPAAE---RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           ++DGD PAA    R     +   A  LL+ + +D V+FRPNYDG  +EP+VL   +PN+L
Sbjct: 118 NIDGDNPAAYPLHR--SAHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLL 175

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-R 234
            NG  GIAVGMAT+IP HN  E+ D  + +I+ PD    AL++ ++GPDFPTG + +  +
Sbjct: 176 ANGAQGIAVGMATSIPPHNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSK 235

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I  AY TGRGS  +R     E+ +     +VVTEIP+ V K+ ++EKIAEL  +K++ 
Sbjct: 236 QAIAEAYTTGRGSFRVRARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLP 295

Query: 295 DIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERF 352
            + D+RDES     R+VIE K +     +++  L+R T L++   +N+  L   + P+  
Sbjct: 296 LVGDVRDESAE-DVRIVIEPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVV 354

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L   L+ ++    +V++RR+ Y   +   R  VL G  IA  N+D+V++IIR    P+ 
Sbjct: 355 GLAECLREWLDHLRDVLIRRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKP 414

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A                                   L+EVQ  AIL +RL  L  L   +
Sbjct: 415 A-----------------------------LMKAFKLTEVQAEAILNMRLRSLRKLEEME 445

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDM 527
           IR E  +L  E+K    +L+S +     + +++  V+D          RRT   +     
Sbjct: 446 IRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRRTTFADAPEHD 505

Query: 528 ---EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
               +E  + RE + V VS  G++        R  +   +  SG+  + +D +   F   
Sbjct: 506 LAAIEEAFVEREPVTVVVSDKGWI--------RTMKGHVEDLSGLAFKQDDRLGFAFFAE 557

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
           T + +L F++ G  Y   V +LP G  +  G+ +   + L Q        P     +   
Sbjct: 558 TTSKLLLFATNGKFYSLDVAKLPGG--RGHGEPIRLFIDLEQEA-----APVALFVNKGG 610

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
             ++V  +  G        D +   + GK  + +D  +E  +V     +       +  +
Sbjct: 611 RKFLVA-SHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVAGHRRETAK 669

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKG---DQVI 736
            + FP+  I   A     GVR      G   D V+
Sbjct: 670 MLVFPLDQIPEMA--RGRGVRLQKYKDGGLSDVVV 702


>gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 748

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/743 (32%), Positives = 385/743 (51%), Gaps = 68/743 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+G
Sbjct: 183 TDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +
Sbjct: 243 SIKMRAVWKKEDGE-----IVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ 
Sbjct: 298 NPIRIVLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLV 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA          
Sbjct: 358 FRRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---------- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE QT AIL LRL  L  L   +++ E + L  E
Sbjct: 408 -------------------LMARFNLSEAQTEAILNLRLRHLAKLEEHELQAEKSQLEKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V 
Sbjct: 449 RDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVI 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y  
Sbjct: 509 LSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYAL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G      
Sbjct: 561 DPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFICS 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +  
Sbjct: 613 FEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS-- 670

Query: 720 NSVGVRGISL-----AKGDQVIS 737
              G + I++      +G+++++
Sbjct: 671 KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  +G   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 576 TGKITLPDGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 634 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 752

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/732 (32%), Positives = 379/732 (51%), Gaps = 67/732 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ I  V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRIGAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +  D     RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  + G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVEHML------MEGDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           NR+GK  + L     ++       E+D +L  T+ G+ + FP+ ++   +     G + I
Sbjct: 615 NRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLS--KGKGNKII 672

Query: 728 SL-----AKGDQ 734
           ++     AKGD 
Sbjct: 673 NIPSAEAAKGDD 684



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL---- 624

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D   ++L ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 625 -PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 678


>gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 751

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/747 (32%), Positives = 382/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1]
 gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1]
          Length = 774

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 249/785 (31%), Positives = 374/785 (47%), Gaps = 70/785 (8%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N K VK AR+ G+V+GKY
Sbjct: 29  ESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVVGDVLGKY 88

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS DGD  AA RYTE RL   A  LLD+
Sbjct: 89  HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQLLLDE 148

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDGSF EP +L AR P VL+NG  GIAVG+AT IP+HNL E+    VA+
Sbjct: 149 IDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREIAAAAVAL 208

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP +    LM+I+ GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + 
Sbjct: 209 IRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQW 268

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DLRDESDRQ 306
           Q+VVTE+P   +   +LE+I EL   K                         +RDES + 
Sbjct: 269 QLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLDLLDAVRDESGKD 328

Query: 307 G-YRVVIELKRGASAD-VILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+V E K  +      +  L  +TSL+S   +N+V + N  +P +  L  IL  +V 
Sbjct: 329 APVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGTILGEWVR 388

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  + RR ++ L K  DR H+L G  I   N+DEV+RIIR S  P+ A          
Sbjct: 389 FRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA---------- 438

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E Q   ILE+RL +L  L +  I  EL  L  E
Sbjct: 439 -------------------LMSAFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAE 479

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
             +  ++L++ S +  ++ +E+     +    RRT +++       E  +V E + V VS
Sbjct: 480 KAKLEELLANESAMKRLMIKEIEGDAKQYGDDRRT-LIQQEKRATFEAKVVDEPVTVVVS 538

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        RA +  G   +    +  D +   F   T   ++ + S G V+   V
Sbjct: 539 QKGWV--------RALKGHGLDPASFTFKAGDGLYAAFQCRTPDVLIAWGSKGRVHSVPV 590

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G     G  + +++ L  G  +           +     ++ A+ +G     KL 
Sbjct: 591 QVLPGGRGD--GVPVTSLIELESGTHLMHYFA------ANAEQQLLLASSNGFGFIAKLG 642

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D +   ++GK  M +D   E L+          +   +  G+ + F +  ++  +     
Sbjct: 643 DMVSRVKAGKAFMTIDEGAEPLAPMPVMPLATQVACLSGQGRLLVFGLDEMKTLSA-GGR 701

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GV  ++L   + +     +              K         +         +   + +
Sbjct: 702 GVILMALEDKETLAQALAIDGRGVVLLGAGRGGKAQEVTLAGAALAPYLGKRARKGRAPD 761

Query: 783 GNISE 787
             +  
Sbjct: 762 VKLKP 766


>gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146]
 gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri
           93-146]
          Length = 760

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 239/738 (32%), Positives = 367/738 (49%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    + E        V++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLTHDNSE-------RVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL +LG+ TVD+  N+DG+ QEP  L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA++DNP   LD L+  I+GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V   E+       IV++ +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 HKIYRTGRGSVRMRAVWRKEEGE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVD 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++++R E V RR  Y L K   R H+L GL  A  N+DEV+ IIR    P+   
Sbjct: 348 REILSEWLSYRRETVRRRLNYRLEKVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLVARFGLSDTQAEAILELKLRHLARLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E      +L+S  +L  +IK+E+++  +     RR+ + E      M + D 
Sbjct: 439 GEQDELAQERDRLQTLLASERKLGTLIKKEIMADAETYGDARRSPLQERSEARAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 VPNEPVTIVLSEGGWV--------RSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L                 + ++  ++ A+
Sbjct: 551 DSSGRSYALDPLTLPSARGQGE--------PLTGKLTPPPGATIEHVLMAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       SD +  NR+GK  + L     +L+      ++D +L  T+ G+ + FP+ 
Sbjct: 603 DAGYGFVCTFSDLVARNRAGKAMLTLPENANVLTPLEINGDDDMLLAITEAGRMLMFPVH 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 DLPQLS--KGKGNKIVSI 678



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 22/181 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   + A            I       A   L          
Sbjct: 515 RSAKGHDIDPSGLNYKAGDAFRAAA--RGKSNQPVVFIDSSGRSYALDPLTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 573 PLTGKLTPPPGATIEHVLMAADDQKLLMASDAGYGFVCTFSDLVARNRAGK---AMLTLP 629

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            N    ++    +N +D ++L +++ G ++  PV+++   S+           K  ++VS
Sbjct: 630 ENA--NVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSK----------GKGNKIVS 677

Query: 894 V 894
           +
Sbjct: 678 I 678


>gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
 gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5]
          Length = 777

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 252/816 (30%), Positives = 387/816 (47%), Gaps = 81/816 (9%)

Query: 1   MTEHIIS----SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M ++       SD  +   +T   + +  + +YL+YA++V+  RA+PD+ DG KPV RRI
Sbjct: 1   MDDNTSDLFAGSDAPDADALT---LGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRI 57

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR  LI+GQGN
Sbjct: 58  LFAMNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGN 117

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGSF+EP  L +R P VL+
Sbjct: 118 FGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLL 177

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I GPDFP G  I+    
Sbjct: 178 NGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDT 237

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K  + 
Sbjct: 238 EIAAAYETGRGSLKVRARWKIEELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLG 297

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQS 335
              L  E                         R+V E K         +N L  YTSL+S
Sbjct: 298 KKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLES 357

Query: 336 LFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             ++N+V +    +P +  L+ IL  +V FR+  + RR ++ L K  DR H+L G  I  
Sbjct: 358 NATLNLVMIGADGRPGQKGLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVF 417

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV+RIIR +  P+ A                                   L++ Q 
Sbjct: 418 LNIDEVIRIIRDADEPKAA-----------------------------LMSAFGLTDRQA 448

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L +  I  EL +L  E  +  ++L++ S +  ++ +E+ +   +   
Sbjct: 449 EDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLANESAMKRLMIKEIETDAKQYGD 508

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT +++       E  +V E + V VS  G+V        RA +  G   +G   +  
Sbjct: 509 DRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RALKGHGLDPAGFTFKAG 559

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   ++ + S G VY   V  LP G     G  + +++ L  G       
Sbjct: 560 DHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPVTSLIELESGSH----- 612

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC---- 690
                 ++  +  ++ A+ +G     K+ D +   ++GK  M +D+     +V       
Sbjct: 613 -LMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPLAPMPV 671

Query: 691 -TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                 +   +  G+ + F +  ++  +G    GV  ++L   + ++    +  A     
Sbjct: 672 LPNATQVACLSSGGRLLVFGMDEMKTLSG-GGRGVILMALDDKETLVQALAIDPAGVVLI 730

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
                 K                   +   + E  +
Sbjct: 731 GTGRGGKAQDETLSYAGLAPHIGKRARKGRAPETKL 766



 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 54/167 (32%), Gaps = 2/167 (1%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G +   GD + +       D           +      L  G  + +          G+ 
Sbjct: 553 GFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSH 612

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                      +Q +L  S  GFG      D     ++GK     D         L  + 
Sbjct: 613 LMHYYA--APVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPLAPMP 670

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + +  Q+  +S  G L+   ++E++  S   +GV++ +    E +V
Sbjct: 671 VLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKETLV 717


>gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 751

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 383/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P+HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +       G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 751

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 383/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P+HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +       G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|73916818|gb|AAZ93277.1| topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 764

 Score =  537 bits (1382), Expect = e-150,   Method: Composition-based stats.
 Identities = 257/826 (31%), Positives = 416/826 (50%), Gaps = 81/826 (9%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYT
Sbjct: 1   RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP
Sbjct: 61  EARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIP 120

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R
Sbjct: 121 PHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVR 180

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IEK  G +EQIV+ EIPY++NKA +++KI ++    ++  IA++RDESDR G R+ 
Sbjct: 181 SKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIA 240

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ 
Sbjct: 241 IELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILA 300

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R+++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L              
Sbjct: 301 RSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL-------------- 346

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                         +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+
Sbjct: 347 ------------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAII 394

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYVK 549
                +  ++K+EL  VK +  TPR + + +    ++++    I  ED  V+V+  GY+K
Sbjct: 395 GDERTMYNLMKKELREVKKKFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIK 454

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           R     + A          +  RD+D +  +    T   +L F+SLG V    +  L   
Sbjct: 455 RTSPRSFAAS-----TLEEIGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADI 509

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
             +  G+ L   +     E    I+     +   +       T+ G ++R +  +F    
Sbjct: 510 RWKDIGEHLSQTI--TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWR 567

Query: 670 RSGKIAM---KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                ++   KL    + +      + +D++L ++ G  +RF I  +    G  + GV+ 
Sbjct: 568 TYRSKSVKYAKLKDDTDQIVAVAPIKLDDVVLVSQNGYALRFNIEEV-PVVGAKAAGVKA 626

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           ++L + D + S  I   +      +   +K +S +  L +   +    +  +   + +  
Sbjct: 627 MNLKEDDVLQSGFICNTSSFYLLTQRGSLKRVSIEEILATSRAKRGLQVLRELKNKPHRV 686

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                           V+E+GF       DF                             
Sbjct: 687 FLAGA-----------VAEQGF-----VGDF-------------------------FSTE 705

Query: 847 VNDNDQIILV-SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           V+ NDQ +LV S+KGT+    + ++ ++ R + G  I  T  DE V
Sbjct: 706 VDVNDQTLLVQSNKGTIYESRLQDLNLSERTSNGSFISDTISDEEV 751



 Score = 74.8 bits (182), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 145/533 (27%), Gaps = 76/533 (14%)

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             VV  +T+    K      V++ +   +   + V +I     N + A    ++   +  
Sbjct: 176 RVVVRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRD 235

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRA---ILELRLARLTGLGRDDIRNELNSLGI 482
            ++  I+L  D++  +  +     +++Q      ++ +       +G   I +   +   
Sbjct: 236 GLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRR 295

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E+               +   E L     +       I          D      +    
Sbjct: 296 EVILARSRFDKEKAEKRLHIVEGLIRVISILDE---VIALIRASENKADAKENLKVSYDF 352

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +       V L +YR                 + +  L                 +Y   
Sbjct: 353 TEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAML--------AAIIGDERTMYNLM 404

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              L     +           L+  E     +              V  TK G ++R   
Sbjct: 405 KKELREVKKKFATP------RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSP 458

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             F          +     D ++ V++      +L+ T LG  +  PI  +         
Sbjct: 459 RSFAASTLEE---IGKRDDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELA-------- 507

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
                 +   D                                    E ++    +    
Sbjct: 508 -----DIRWKD----------------------------------IGEHLSQTITNFETN 528

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSKINEIGA 840
             I      +          V+  G  KR    +F    + R  K ++   +   ++   
Sbjct: 529 EEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYR-SKSVKYAKL--KDDTDQ 585

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +VAV P+  +D ++LVS  G  +R  + E+ +      GV   +  +D+ + S
Sbjct: 586 IVAVAPIKLDD-VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQS 637


>gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 750

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 233/747 (31%), Positives = 374/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E ++GPDFPT   ++  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  +E        IVVT +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+S + VN   +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR    P+   
Sbjct: 351 RTLLSEWLTYRIGTVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE+Q   IL+ RL +L  L    IR
Sbjct: 408 --------------------------PVLMARFELSELQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E +  L +L S ++L  ++++ELL   +     RR+ IVE        + + 
Sbjct: 442 GEQDELAKERERLLALLGSEAKLKKLVRKELLEDAETYGDDRRSPIVERAEARALTENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+         R  +       G+  +  D         ++   +F 
Sbjct: 502 LPSEPVTVVISEKGWA--------RCAKGHDIDAGGLSYKAGDNFKAAAAGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         +    V A+
Sbjct: 554 DSTGRSYSLAAHTLPSA--RGQGEPLTGRLTPPPGASFECVLL------PDDEALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +   +++       +++ +   T  G+ + FP+
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDDWLAAVTTEGRLLVFPV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             +         G + I +  G++V S
Sbjct: 666 RDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD   + A                 +  A   L S   +        +   G  
Sbjct: 529 GLSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGAS 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E  C  L   E   +  S+ G+G      D +  N++GK + +           +VA  
Sbjct: 589 FE--CVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAR-----VVAPR 641

Query: 846 PV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           P+   ++D +  V+ +G L+  PV ++    +  KG  I      ERV S
Sbjct: 642 PLASREDDWLAAVTTEGRLLVFPVRDLPQLGK-GKGNKIIGI-PGERVAS 689


>gi|309807859|ref|ZP_07701791.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
 gi|308168961|gb|EFO71047.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 01V1-a]
          Length = 662

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 268/742 (36%), Positives = 427/742 (57%), Gaps = 86/742 (11%)

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           PVVL AR P +LVNG  GIAVGM TNIP HNL E++ G   +++NPD+ +  LM  I GP
Sbjct: 5   PVVLPARVPALLVNGVSGIAVGMTTNIPPHNLSEIISGLHMLMENPDVSVRELMTAITGP 64

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DFPTG +I+GR+GI  AY TG+G+IV+R  ++I+     RE+I+++EIPY VNKA +++K
Sbjct: 65  DFPTGGIIMGRSGILRAYKTGKGNIVVRAKTNIDTEKSGRERIIISEIPYMVNKAELVKK 124

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           IA+L R+K +  I  ++DESD++G R+ I+++R ASA V+LN L++ T LQS F VNMVA
Sbjct: 125 IADLARDKVVDGITGIQDESDQKGLRITIDIRRDASASVVLNNLFKQTQLQSNFGVNMVA 184

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +    P    L  IL+ ++A +E ++ RRTKY L KA  RAH++ GL IA+ ++DE+++I
Sbjct: 185 IVDGSPHVLNLKQILQYYLAHQENIITRRTKYDLKKAEARAHIIEGLRIALDHIDEIIKI 244

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
           IR S N + A+ +L+ R                            L + Q +AIL++RL 
Sbjct: 245 IRGSKNSDIAKDQLITR--------------------------FGLDDRQAQAILDMRLV 278

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE- 522
           RLTGL RD +  E   L  +I +  DIL+   R+  II  ELL ++      RRT I + 
Sbjct: 279 RLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDERRTEISDS 338

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
            ++ ++DED I ++++++T++H GY+KR+P   ++ Q RGG+G  G+ ++++DF+  L  
Sbjct: 339 EIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIRGMGVQNDDFINHLIY 398

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+TH  +LFF++ G VY +K + +P     A+G  +IN++ L +GE++  ++    +++ 
Sbjct: 399 VNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLEKGEKVQAVVKIATNDT- 457

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
             N Y++F TK+G V+R  +S+F  I RSG IA+ L   DE+ +V       +IL+ T+L
Sbjct: 458 --NKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRENDELSNVLLTDGSQNILIGTRL 515

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G  V F  + +R   GR + GVRGI L   D V+  +IV                     
Sbjct: 516 GYAVIFNENEVRTM-GRVASGVRGIKLRANDYVVGSSIVDD------------------- 555

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                                +L +SEKG+GKRT + ++ I +R
Sbjct: 556 ----------------------------------HSEVLVISEKGYGKRTLASEYPIKSR 581

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
              G++  +V++ N  G LV V  V+ ++ ++L++D G +IR+ V+ +    RAT GV +
Sbjct: 582 GCMGVKTANVTEKN--GPLVGVTVVDGSEDLMLITDAGVIIRLEVDGVSQTGRATIGVRL 639

Query: 883 FSTAKDERVVSVERIRESEIVD 904
               +  +V S+ R++  +  +
Sbjct: 640 IKLDQGTKVASLTRVKSEDNSE 661


>gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501]
 gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501]
          Length = 750

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 233/747 (31%), Positives = 374/747 (50%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP  L AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E ++GPDFPT   ++  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  +E        IVVT +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRVEDGD-----IVVTALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+S + VN   +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR    P+   
Sbjct: 351 RTLLSEWLTYRIGTVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE+Q   IL+ RL +L  L    IR
Sbjct: 408 --------------------------PVLMARFELSELQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E +  L +L S ++L  ++++ELL   +     RR+ IVE        + + 
Sbjct: 442 GEQDELAKERERLLALLGSEAKLKKLVRKELLEDAETYGDDRRSPIVERAEARALTENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+         R  +       G+  +  D         ++   +F 
Sbjct: 502 LPSEPVTVVISEKGWA--------RCAKGHDIDAGGLSYKAGDNFKAAAAGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         +    V A+
Sbjct: 554 DSTGRSYSLAAHTLPSA--RGQGEPLTGRLTPPPGASFECVLL------PDDEALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +   +++       +++ +   T  G+ + FP+
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDDWLAAVTTEGRLLVFPV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
             +         G + I +  G++V S
Sbjct: 666 RDLPQLG--KGKGNKIIGI-PGERVAS 689



 Score = 45.9 bits (107), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+S   GD   + A                 +  A   L S   +        +   G  
Sbjct: 529 GLSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGAS 588

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            E  C  L   E   +  S+ G+G      D +  N++GK + +           +VA  
Sbjct: 589 FE--CVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAR-----VVAPR 641

Query: 846 PV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           P+   ++D +  V+ +G L+  PV ++    +  KG  I      ERV S
Sbjct: 642 PLASREDDWLAAVTTEGRLLVFPVRDLPQLGK-GKGNKIIGI-PGERVAS 689


>gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           642]
          Length = 751

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 384/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +LSS S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 751

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 382/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLSEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            L+E+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLTEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVPAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv.
           syringae B728a]
          Length = 751

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 384/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +LSS S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946]
 gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430]
 gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158]
          Length = 758

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 241/818 (29%), Positives = 391/818 (47%), Gaps = 70/818 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++         + G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------QDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNTAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    + +ID+P   LD L++I++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDES+ +   R+VI  +      + ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESNHENPTRLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE+Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFDISEIQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDC 532
            E + L  E      +L S  +L  ++K+EL +  D     RR+ + E        + + 
Sbjct: 439 GEQDELEKERAHLEGLLGSERKLNTLLKKELQADSDAYGDERRSPLREREEAKAIGEHEL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 MPSEPVTIVLSQSGWV--------RSAKGHDIDPAGLSYKAGDSFLGAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + +   ++ A+
Sbjct: 551 DSTGRSYALDPVTLPSARGQGE--------PLTGKLTPPPGAVVEQVLMADDTQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPIS 711
             G       SD +  NR+GK  + L S   +++       ++ +L  T  G+ + FP+ 
Sbjct: 603 DAGYGFVCTFSDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDLLLAITAAGRMLMFPVG 662

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +   +     G + IS+   +       +        E    +     +  L + D ++
Sbjct: 663 DLPQLS--KGKGNKIISIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLTLKAADLQK 720

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
             + +           +R   + ++      V+E G G
Sbjct: 721 FRADRGRRGTLLPRGLQRIDRVDVEGTPRAAVTE-GSG 757



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  +  A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDSFLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    +    Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 575 TGKLTPPPGAVVEQVL--MADDTQKLLMASDAGYGFVCTFSDLVSRNRAGKALLTLPSNA 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST------AK 887
                 ++A   ++ ND ++L ++  G ++  PV ++   S+  KG  I S       + 
Sbjct: 633 R-----VMAPLAIHRNDDLLLAITAAGRMLMFPVGDLPQLSK-GKGNKIISIPSAEAASG 686

Query: 888 DERVVSVERIRESEIV 903
           ++++  +  +     +
Sbjct: 687 EDKLAWLLLLTPENAI 702


>gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786]
          Length = 776

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/813 (31%), Positives = 389/813 (47%), Gaps = 75/813 (9%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E       S+++    +++YL+YA++V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTPDLFAEPAAPEGDSLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++G+ TVDF PNYDGSF EP +L  R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASADV-ILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKSMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNAT 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLAAILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                               G   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKQA-----------------------------LIGAFGLTERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQFGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFETKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGD--GVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQ 692
            ++       ++ A+ +G     K+ D +   ++GK  M +D+        +  +     
Sbjct: 621 AEQP------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPVLPA 674

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + +   +  G+ + F I  ++   G    GV  ++L   + ++    +  A        
Sbjct: 675 ASRVACLSSGGRLLVFGIDEMKTLGG-GGRGVILMALDPKETLVQALAIDAAGVVLTGTG 733

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              K         + +       +   + +  +
Sbjct: 734 RGGKAQEETLAGRALEPHVGKRARKGRAPDTKL 766



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  + + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D         L  +  
Sbjct: 614 LHYFA--APAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPV 671

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +    ++  +S  G L+   ++E++      +GV++ +    E +V
Sbjct: 672 LPAASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMALDPKETLV 717


>gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147]
          Length = 776

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 255/813 (31%), Positives = 389/813 (47%), Gaps = 75/813 (9%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++      E       S+++    +++YL+YA++V+ GRA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTPDLFAEPAAPEGDSLTLGRYAESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  N K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+S+R  LI+GQGNFGS
Sbjct: 61  MNEMGLGNNAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++G+ TVDF PNYDGSF EP +L  R P VL+NG 
Sbjct: 121 RDGDGAAAMRYTEARLTPIAQLLLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGA 180

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT IP+HNL EV    VA+I NP +    LM+++ GPDFP G  I+     I 
Sbjct: 181 SGIAVGLATEIPSHNLREVAAAAVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEIS 240

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 241 AAYETGRGSLKVRARWKIEELARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKT 300

Query: 299 LRDE-------------------SDRQGYRVVIELKRGASADV-ILNQLYRYTSLQSLFS 338
           L  E                         R+V E K         +N L  +TSL+S  +
Sbjct: 301 LTQEQINTKKSMLDLLDAVRDESGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNAT 360

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+V +    +P +  L  IL  +V FR+  V RR ++ L K  DR H+L G  I   N+
Sbjct: 361 LNLVMIGEDGRPAQKGLAAILGEWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNI 420

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                               G   L+E Q   I
Sbjct: 421 DEVIRIIRESDEPKQA-----------------------------LIGAFGLTERQAEDI 451

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L +  I  EL  L  E  +  ++L++ S +  ++ +E+ +   +    RR
Sbjct: 452 LEIRLRQLARLEKIKIEKELEELRAEKAKLEELLANESAMKRLMIKEIEADAKQFGDERR 511

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T +++       E  +V E + V VS  G+V        RA +  G   +    +  D +
Sbjct: 512 T-LIQQEKRATFETKVVDEPVTVVVSQKGWV--------RALKGHGLDPASFSFKAGDGL 562

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++ + S G VY   V  LP G     G  + +++ L  G  +      P
Sbjct: 563 YAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGD--GVPVTSLIELESGSHLLHYFAAP 620

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-----DEILSVETCTQ 692
            ++       ++ A+ +G     K+ D +   ++GK  M +D+        +  +     
Sbjct: 621 AEQP------LLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPVLPA 674

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
            + +   +  G+ + F I  ++   G    GV  ++L   + ++    +  A        
Sbjct: 675 ASRVACLSSGGRLLVFGIDEMKTLGG-GGRGVILMALDPKETLVQALAIDAAGVVLTGTG 733

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              K         + +       +   + +  +
Sbjct: 734 RGGKAQEETLAGRALEPHVGKRARKGRAPDTKL 766



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 2/166 (1%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +  + + L  G  + +          G+  
Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     EQ +L  S  GFG      D     ++GK     D         L  +  
Sbjct: 614 LHYFA--APAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPV 671

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +    ++  +S  G L+   ++E++      +GV++ +    E +V
Sbjct: 672 LPAASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMALDPKETLV 717


>gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624]
          Length = 792

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 245/788 (31%), Positives = 375/788 (47%), Gaps = 97/788 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+      ++ E     S+ + +  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MSTETTDLNQGETGD--SLWLANYAQRAYLEYALSVVKGRALPDVSDGQKPVQRRILYAM 58

Query: 61  MQMGVEWNK----KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
            +MG+ ++     K VK AR+ G+V+G++HPHG+ A YDAL RMAQD++ R  LI+GQGN
Sbjct: 59  ERMGLGYSGNTAAKPVKSARVVGDVLGRFHPHGDQAAYDALVRMAQDFAQRYPLIDGQGN 118

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGS DGD  AA RYTE RL K +  LLD++ + TVDF PNYDGS +EP  L AR P  L+
Sbjct: 119 FGSRDGDGAAAMRYTEARLAKISSLLLDEIDEGTVDFMPNYDGSTEEPKQLPARLPFTLL 178

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT- 235
           NG  GIAVG+AT IP+HN+ EV   CVA+I  P +  + L E++ GPD+P G  I+    
Sbjct: 179 NGASGIAVGLATEIPSHNISEVAAACVALIKTPKLKDEELFELLPGPDYPGGGQIISAEA 238

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            I  AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I EL   K    
Sbjct: 239 DIAEAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSTQKVLEEIEELSNPKVKAG 298

Query: 296 IADLRDE-------------------SDRQGYRVVIELKRGA-SADVILNQLYRYTSLQS 335
              +  E                   S     R+V E K      + ++  L  +TSL++
Sbjct: 299 KKTVTQEQTQLKSTLLSVLDGVRDESSKDAPVRLVCEPKTSKIDQNELITTLLAHTSLET 358

Query: 336 LFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
              +N+  +    KP + ++  +L+ ++AFR + + RR+++ L K +DR H+L G    +
Sbjct: 359 SAPINLTMVGLDGKPVQKSMRQMLEEWIAFRRQTIARRSQHRLGKVQDRIHILEGRQTVL 418

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            N+DEV++IIR S  P+ A                                   LS+ Q 
Sbjct: 419 LNVDEVIKIIRNSDEPKPA-----------------------------LIKRFRLSDRQA 449

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
             ILE+RL +L  L    I  EL  L  + KE  DIL S + L  ++ +E+ +       
Sbjct: 450 EDILEIRLRQLARLEAIKIEQELAELRGKEKELQDILGSPAALRKLMVKEIEADAKAFGD 509

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            RRT I      +  E  ++ E + V VS  G+V        RA++  G   +    +  
Sbjct: 510 ARRTLIQAEKKAV-AEVKVIDEPVTVVVSQKGWV--------RARQGHGHDAASFAFKAG 560

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
           D +   F   T   +L F S G VY   V  LP       G+ L  ++ L  G +     
Sbjct: 561 DGLYGTFECRTVDVMLAFGSNGRVYSVPVSALPGARGD--GQPLTTMVELEAGTQ----- 613

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------ 688
                 +   + +++ +T  G     ++   +   + GK  +   S     +V       
Sbjct: 614 -LVHYYAGPASAWLLLSTSGGYGFLAQVEHMVSRQKGGKAFINCGSDGTPDTVCRPSMAH 672

Query: 689 ----------------TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
                             +  + ++  +  G+ + F I  ++        G+  I L   
Sbjct: 673 APNPATGVVASAAEGGLHSPASHVVCVSTGGRILSFQIGELKPMPS-GGRGLMLIDLEPK 731

Query: 733 DQVISMAI 740
           DQ+   A 
Sbjct: 732 DQLAGAAA 739


>gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
 gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222]
          Length = 752

 Score =  536 bits (1381), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/754 (32%), Positives = 390/754 (51%), Gaps = 70/754 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT   +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D +++ L+  T L+  F VN+  +    +P+   L+ ILK +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P           
Sbjct: 356 IEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPC---------- 405

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      +SE+Q  AIL+++L  L  L    IR E   L 
Sbjct: 406 -------------------PVLMSRFNISEIQANAILDIKLRNLAKLEEFKIRAEQEELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E        + D +  E + 
Sbjct: 447 AEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L+++ G  I  ++    ++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNVSPGSSIRQVVMGENEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFA 717
            K SD +  N+SGK  + L    E++        +   IL  T  G+ + FPI  +   +
Sbjct: 611 CKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS--MAIVLHA 744
                G + I++      + ++ +S  MAI  +A
Sbjct: 671 --KGKGNKIINIPSAKAKEREEFVSHLMAIPENA 702



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 14/182 (7%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   GD+ ++ A            +       +                         
Sbjct: 527 GLNYKSGDKFLASA--KGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPG 584

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAV 844
           S  R   +   EQ  L  S+ G+G      D    N+SGK +      S++     +  +
Sbjct: 585 SSIRQVVMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADL 644

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIR 898
               D++QI+ ++++G ++  P+ ++   S+  KG  I +        ++E V  +  I 
Sbjct: 645 ----DSNQILAITNQGRMLLFPIKDLPQLSK-GKGNKIINIPSAKAKEREEFVSHLMAIP 699

Query: 899 ES 900
           E+
Sbjct: 700 EN 701


>gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32]
 gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus]
 gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32]
          Length = 752

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/754 (32%), Positives = 390/754 (51%), Gaps = 70/754 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT   +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D +++ L+  T L+  F VN+  +    +P+   L+ ILK +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P           
Sbjct: 356 IEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPC---------- 405

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      +SE+Q  AIL+++L  L  L    IR E   L 
Sbjct: 406 -------------------PVLMSRFNISEIQANAILDIKLRNLAKLEEFKIRAEQEELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E        + D +  E + 
Sbjct: 447 AEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L+++ G  I  ++    ++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNVSPGTSIRQVVMGENEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFA 717
            K SD +  N+SGK  + L    E++        +   IL  T  G+ + FPI  +   +
Sbjct: 611 CKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS--MAIVLHA 744
                G + I++      + ++ +S  MAI  +A
Sbjct: 671 --KGKGNKIINIPSAKAKEREEFVSHLMAIPENA 702



 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 65/182 (35%), Gaps = 14/182 (7%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   GD+ ++ A            +       +                         
Sbjct: 527 GLNYKSGDKFLASA--KGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPG 584

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAV 844
           +  R   +   EQ  L  S+ G+G      D    N+SGK +      S++     +  +
Sbjct: 585 TSIRQVVMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADL 644

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIR 898
               D++QI+ ++++G ++  P+ ++   S+  KG  I +        ++E V  +  I 
Sbjct: 645 ----DSNQILAITNQGRMLLFPIKDLPQLSK-GKGNKIINIPSAKAKEREEFVSHLMAIP 699

Query: 899 ES 900
           E+
Sbjct: 700 EN 701


>gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 751

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 384/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +LSS S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDERRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
 gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01]
          Length = 752

 Score =  536 bits (1380), Expect = e-150,   Method: Composition-based stats.
 Identities = 243/754 (32%), Positives = 390/754 (51%), Gaps = 70/754 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV +  + +ID P  +L  +M  I+GPD+PT   +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D +++ L+  T L+  F VN+  +    +P+   L+ ILK +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P           
Sbjct: 356 IEFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPC---------- 405

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      +SE+Q  AIL+++L  L  L    IR E   L 
Sbjct: 406 -------------------PVLMNRFNISEIQANAILDIKLRNLAKLEEFKIRAEQEELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMV 539
            E ++   +L S  RL  +IK+E+ +  D+    RR+ ++E        + D +  E + 
Sbjct: 447 AEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLIERAEAKALTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASTKGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L+++ G  I  ++    ++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNVSPGTSIRQVVMGENEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFA 717
            K SD +  N+SGK  + L    E++        +   IL  T  G+ + FPI  +   +
Sbjct: 611 CKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS--MAIVLHA 744
                G + I++      + ++ +S  MAI  +A
Sbjct: 671 --KGKGNKIINIPSAKAKEREEFVSHLMAIPENA 702



 Score = 45.9 bits (107), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 14/182 (7%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   GD+   +A            +       +                         
Sbjct: 527 GLNYKSGDKF--LASTKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPG 584

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT-DVSKINEIGALVAV 844
           +  R   +   EQ  L  S+ G+G      D    N+SGK +      S++     +  +
Sbjct: 585 TSIRQVVMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADL 644

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIR 898
               D++QI+ ++++G ++  P+ ++   S+  KG  I +        ++E V  +  I 
Sbjct: 645 ----DSNQILAITNQGRMLLFPIKDLPQLSK-GKGNKIINIPSAKAKEREEFVSHLMAIP 699

Query: 899 ES 900
           E+
Sbjct: 700 EN 701


>gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
 gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82]
 gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens
           SH164]
          Length = 739

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 231/737 (31%), Positives = 368/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + +  LL +LG+ TV+++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSQYSEVLLSELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV+ G +A+I NP+     L E I GPD PT   +I  +  +    +TGRGS  +R V
Sbjct: 189 LREVIKGTIALIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             +EK       I++TE+PYQV+ + ++ +IA+ ++ K++  ++DLRDESD     R+VI
Sbjct: 249 YTVEKNE-----IIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHVNPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     AD +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R+E V 
Sbjct: 304 VLRSNRVDADTVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRKILLEWIGIRKETVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LNK   R H+L GL IA  ++D V+RIIR   +P+                   
Sbjct: 364 RRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDHPKA------------------ 405

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  + E Q  AILEL+L  L  L   +IR E + L        + 
Sbjct: 406 -----------VLIQTFKIDETQAEAILELKLRHLAKLQEMEIRQEQDELSARAALIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I  EL     +    RR+ IVE      M ++D I  E + V +S  G++
Sbjct: 455 LANPESLKNLIIGELKEDAKKFGDERRSPIVEREGAVQMREQDLIPAEPVTVILSEAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +        +  R  D         ++  V      G  Y   +  LP 
Sbjct: 515 --------RSAKGADVDAEKLNYRAGDQYLSHASGKSNQRVYILDETGRSYALAINSLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+        + F +     ++  ++  +  G   + +       
Sbjct: 567 ARGLGE--------PLSSKLSPANGVSFIQILVEEDDQEIIAISSKGYGFKTQAKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +    + L +      + + L T  G+ +  P+S +         G + I 
Sbjct: 619 AKAGKAFLSIPEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSELPSLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L + +Q++SM  +   +
Sbjct: 677 LEQDEQLLSMTTLNLNE 693



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 77/189 (40%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G  V    L    GDQ +S A        Y        +  A   L S        
Sbjct: 515 RSAKGADVDAEKLNYRAGDQYLSHASGKSNQRVYILDETGRSYALAINSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G    +   E    +Q I+ +S KG+G +T +     + ++GK   +     
Sbjct: 575 SSKLSPANGVSFIQILVE--EDDQEIIAISSKGYGFKTQAKQLDTNAKAGKAFLSI---- 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             E G  + +    D   + L++D G L+ +PV+E+   ++  KG  +    +DE+++S+
Sbjct: 629 -PEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSELPSLNK-GKGNKLIQLEQDEQLLSM 686

Query: 895 ERIRESEIV 903
             +  +EI+
Sbjct: 687 TTLNLNEII 695


>gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1]
 gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1]
          Length = 765

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/754 (32%), Positives = 390/754 (51%), Gaps = 69/754 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+    +   ++S+ D  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++ 
Sbjct: 2   SELSNFESNETLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  LL ++ + TVD+ PN+DG+ QEP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTESRLSKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATG 244
           MAT+IP HNL E+   C+ +++NP+ +LD L+  ++GPDFPTG   I  ++ I   Y TG
Sbjct: 181 MATDIPPHNLREIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYETG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G I  R    IE+       IVV E+P+QV+ + +LE+IA  ++ K++  + DLRDESD
Sbjct: 241 KGQIKARARFTIEEGE-----IVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL-IGILKAF 361
            +   R+VI  K      D ++  L+  T L+  + VNM  +      +       L  +
Sbjct: 296 HENPTRLVIVPKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKPLKNFLSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR +VV RR ++ L+K  +R H+L GL IA  N+DEV+ IIR    P   + ELM R 
Sbjct: 356 LRFRIDVVRRRLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKP---KVELMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS++Q  +ILEL+L  L  L    I+ E + L 
Sbjct: 412 -------------------------FGLSDMQAESILELKLRHLAKLEEMRIKGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E K+   +LSS  +L  +I +E+    D+    RRT IV         +ED +  + + 
Sbjct: 447 KERKQLEGLLSSDRKLKKLITEEIQEAIDDFGDDRRTPIVARKEAQAFSEEDLLSNDPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        RA +      +G+  +  D         ++ +++  +S G  Y
Sbjct: 507 VVISKQGWI--------RAAKGHDIDVNGLSYKSGDEFLVSTKGRSNQTLVLLASNGRTY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             K   LP    + +G+ +   +SL +   I + +            + + A+  G    
Sbjct: 559 SIKAHTLPSA--RGQGEPITGRISLEKDATIVSAVL------DNEEAHYLIASDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            +L D    N++GK  + L     +++           ++  +  G+ + F ++++   A
Sbjct: 611 AQLKDLYAKNKAGKATLSLPKGARVMAPVPVQDPVSGRVVAISNEGRMLAFDVASLPQMA 670

Query: 718 GRNSVGVRGISL------AKGDQVISMAIVLHAD 745
                G + +S+       + + VI++A V   D
Sbjct: 671 --KGKGNKMLSIPSSRAADREELVIALACVQPND 702



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 81/242 (33%), Gaps = 25/242 (10%)

Query: 675 AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG--RNSVG----VRGIS 728
           A+     D    +    +       ++       PI+ +    G  R + G    V G+S
Sbjct: 473 AIDDFGDDRRTPIVARKEAQ---AFSEEDLLSNDPITVVISKQGWIRAAKGHDIDVNGLS 529

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
              GD+   +             +       + +                       +  
Sbjct: 530 YKSGDEF--LVSTKGRSNQTLVLLASNGRTYSIKAHTLPSARGQGEPITGRISLEKDATI 587

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               L  +E   L  S+ G+G      D    N++GK         + +   ++A  PV 
Sbjct: 588 VSAVLDNEEAHYLIASDAGYGFVAQLKDLYAKNKAGK-----ATLSLPKGARVMAPVPVQ 642

Query: 849 D--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRES 900
           D  + +++ +S++G ++   V  +   ++  KG  + S        ++E V+++  ++ +
Sbjct: 643 DPVSGRVVAISNEGRMLAFDVASLPQMAK-GKGNKMLSIPSSRAADREELVIALACVQPN 701

Query: 901 EI 902
           ++
Sbjct: 702 DL 703


>gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5]
 gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5]
          Length = 752

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 388/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP+VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  +E        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRVEDGD-----IIVTALPHQVSGAKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     AD ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P   R
Sbjct: 351 RALLVEWLEFRVTTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP---R 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L++R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AKLIER--------------------------FALSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L+S ++L  +++ ELL   +     RR+ IV         + + 
Sbjct: 442 AEQDELLKEQAKLQALLNSEAKLKKLVRTELLQDAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTIVLSEKGWV--------RCAKGHDIDATGLSYKAGDGYKTAAPGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGRLTPPPGATFECVLL------PDDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  ++L+       ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVLAPRPVADREQNWLASVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
 gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14]
          Length = 758

 Score =  535 bits (1379), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/739 (33%), Positives = 385/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  V +I+NP  DLDALME ++GPD+PT   +I  +  +
Sbjct: 173 VTGIAVGMATDIPPHNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y +GRGSI +R V H E        IV+T +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 KKVYKSGRGSIKMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  F  N+  L    +P+   L
Sbjct: 288 DLRDESDHENPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ +R   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P   +
Sbjct: 348 VQIIAEWLEYRRTTVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS +Q  AILE++L +L  L    IR
Sbjct: 405 AELMSR--------------------------FDLSAIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +L S  RL  +IK+E+L+  ++    RR+ +VE        + D 
Sbjct: 439 GEQDELSKEREQLEKLLGSERRLNTLIKKEILADAEKYGDERRSPLVEREEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      S +  +  D         ++   +F 
Sbjct: 499 IPSEAITVVLSEKGWI--------RHAKGHEVDPSTLNYKSGDSYLAHARGKSNLPAIFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  I  ++   +D+        + A+
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPITGRLNLTPGTNIRQVLMAEDDQLW------LMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +     +L  +       + IL  T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 41.7 bits (96), Expect = 0.63,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +   +Q  L  S+ G+G    S D    N+SGK +     +        VA  
Sbjct: 584 TNIRQVLMAEDDQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADI 643

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              +NDQI+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 644 ---ENDQILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2
           str. OVINE]
          Length = 748

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 388/742 (52%), Gaps = 68/742 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           + E   +GI  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   TTEINYEGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  V ++DNP   LD ++ +++GPD+PT   +I  +  I   Y  G
Sbjct: 181 MATDIPPHNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E+       IV++ +P+Q + + ++E++A  +R K++  + D+RDESD
Sbjct: 241 RGSIKMRAVWKKEEGE-----IVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D +++ L+  T L+  + VNM  +    KP    L+ IL  +
Sbjct: 296 HENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR   V RR  Y L+K  +R ++L GL IA  N+DEV+ IIR    P   + ELM R 
Sbjct: 356 LSFRRTTVTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIRNEDEP---KAELMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L++VQ  AIL LRL  L  L    ++ E + L 
Sbjct: 412 -------------------------FNLTDVQAEAILNLRLRHLAKLEEHQLQAEKSELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDCIVREDMV 539
            E  E   IL S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ 
Sbjct: 447 KERDELQLILGSERRLNSLIKKEIQADAKAFASPRRSPLVERAESKAIAESDLTPIEDVT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +        +  R  D         ++  V+F  S G  Y
Sbjct: 507 VILSEKGWV--------RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L +G  +  ++       + +   V+ A+  G    
Sbjct: 559 ALDPTSLPSA--RSQGEPLTGKITLPEGATVQQVL------MANSETKVLMASDSGYGFI 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FP+S +   +
Sbjct: 611 CTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVGRMLVFPVSELPALS 670

Query: 718 GRNSVGVRGISL-----AKGDQ 734
                G + I++       GD+
Sbjct: 671 --KGKGNKIINISAAAAKSGDE 690



 Score = 42.1 bits (97), Expect = 0.50,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 67/175 (38%), Gaps = 16/175 (9%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+ +S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQALSYRAGDDYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG   ++    +   E  +L  S+ G+G   +  D    N++GK + +   + 
Sbjct: 576 TGKITLPEGATVQQVL--MANSETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+      +ND+   ++ +S+ G ++  PV+E+   S+  KG  I + +
Sbjct: 634 KVLPPQLL------ENDENLSLVAMSNVGRMLVFPVSELPALSK-GKGNKIINIS 681


>gi|301633131|gb|ADK86685.1| DNA topoisomerase IV, A subunit [Mycoplasma pneumoniae FH]
          Length = 789

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 229/742 (30%), Positives = 365/742 (49%), Gaps = 42/742 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ ++ +   +I D    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   EKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+A+IYDA+ RM+Q W   L  I   GN GS+DGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S  EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+GE++DG    I+NPD DL A+++I++GPDFPTG ++     + N Y TG+G  V
Sbjct: 182 IAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+        +  + QIV+TEIPY+  KA ++++I EL+ + ++  +  + D SDR G R
Sbjct: 242 IQAKYETNT-AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I  K   SAD I+  L+++T LQ  F++N   +    P R  L+     F+AF  E++
Sbjct: 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +   KY L  A  R  ++ GL  AV+ +DE++R+IR + + + A+ +L+ +         
Sbjct: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT      +  E   L   I+    
Sbjct: 412 -----------------YAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAEC 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGY 547
           +++       +++ +    K + + PRR +IV  +   + +  D I  +++ + +SH G 
Sbjct: 455 LIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGI 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
                   ++ +             ++D +    +V         +SLG +    +++  
Sbjct: 515 Y-------FKFEPEQLAKHLVEFKSEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTL 567

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +     + L     L + E++        D+       +V  ++ G V+R +LS  I 
Sbjct: 568 SNTKTKMNELLAKKPILMEDEKLVLAGIVNPDK--MEQQLLVLTSQCGMVKRVELSKVIN 625

Query: 668 INRSGKI-AMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             +      M L  RD++++    T  +   + L +       F    I        +GV
Sbjct: 626 TKQIKSSCCMALRERDKLVNAFVQTKREPKLVCLVSSSNSFATFLAEEI-PIISNKGIGV 684

Query: 725 RGISLAKGDQVISMAIVLHADA 746
           +GI L   ++V     +   DA
Sbjct: 685 KGIKLKAEEKVRFAMPLQDNDA 706



 Score = 48.2 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ DQ+I   +V ++D  +              + +S    ++  L     +     +  
Sbjct: 532 SEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLV 591

Query: 790 CQELKLK---EQFILTVSEK-GFGKRTSSYDFRISNRSGKGIR---ATDVSKINEIGALV 842
              +      EQ +L ++ + G  KR      ++ N   K I+      + + ++   LV
Sbjct: 592 LAGIVNPDKMEQQLLVLTSQCGMVKRVELS--KVIN--TKQIKSSCCMALRERDK---LV 644

Query: 843 AVFP--VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             F     +   + LVS   +       EI I S    GV       +E+V     ++++
Sbjct: 645 NAFVQTKREPKLVCLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDN 704

Query: 901 E 901
           +
Sbjct: 705 D 705



 Score = 45.6 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 82/213 (38%), Gaps = 17/213 (7%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKGDQ 734
            +D+++        +   + T LG  +  PI               +   + I L + ++
Sbjct: 533 EQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAK--KPI-LMEDEK 589

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSSVEGNISEERCQE 792
           ++   IV     +    +   +    +R  +S   +T++I S    +  E +       +
Sbjct: 590 LVLAGIVNPDKMEQQLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQ 649

Query: 793 LKLKEQFI-LTVSEKGFGKRT-SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            K + + + L  S   F   T  + +  I +  G G++   +    +   +    P+ DN
Sbjct: 650 TKREPKLVCLVSSSNSFA--TFLAEEIPIISNKGIGVKGIKLKAEEK---VRFAMPLQDN 704

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           D +++++  G +    V E+ +ASR + G  + 
Sbjct: 705 DALVVINSDGGVYNFEVVELAVASRMSVGKKLI 737


>gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri]
          Length = 657

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/703 (33%), Positives = 366/703 (52%), Gaps = 60/703 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V 
Sbjct: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ A                 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L+E Q  AILEL+L  L  L    IR E + L  E  +   I
Sbjct: 403 ------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L+S  ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V
Sbjct: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R+ +       G+  +  D         ++  V+F  S G  Y      LP 
Sbjct: 511 --------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              + +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  
Sbjct: 563 A--RGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVAR 614

Query: 669 NRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPI 710
           NR+GK  + L     ++  V      + +L  T+ G+ + FP+
Sbjct: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 12/154 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 511 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 624

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPV 867
             E   ++    + D +D ++ ++  G ++  PV
Sbjct: 625 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657


>gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069]
 gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069]
          Length = 746

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 382/750 (50%), Gaps = 71/750 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G++   KY K
Sbjct: 4   EGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 64  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 122

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL +LG+ TV++ PN+DG+  EP VL AR PN+L+NG  GIAVGMAT+IP
Sbjct: 123 ESRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATDIP 182

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HNL EV   CV +++NP  +L  L+E I+GPDFPT   +I  R  I   Y  GRGSI +
Sbjct: 183 PHNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSIRM 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R     E        IV+T +P+Q + + +LE+IA  ++ K++  ++DLRDESD +   R
Sbjct: 243 RARFEKEDGD-----IVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENPTR 297

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREE 367
           +VIE +      + ++  L+  T L+  + VNM  +    +P+   L  +LK ++ FR E
Sbjct: 298 LVIEPRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFRHE 357

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K  DR H+L GL IA  N+DEV+ IIR    P   + +LM+R       
Sbjct: 358 TVRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKP---KLKLMER------- 407

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS+ Q  +ILEL+L  L  L    I+ E + L  E    
Sbjct: 408 -------------------FDLSDRQAESILELKLRHLAKLEEMKIKGEQSELEDEADWL 448

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
              L S+ R+  +IK+E+  V ++    RR+ IVE        + + +  E + V +S  
Sbjct: 449 QLTLGSKQRMKTLIKKEIEEVIEQYGDDRRSPIVERKEAKALSETELLPTEPVTVILSEK 508

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R  +       G+  R  D   D     ++   +F  S G  +      
Sbjct: 509 GWV--------RCAKGHDVDAVGMNYRSGDKYLDSAQGKSNQYAVFLDSTGRTFSLLANT 560

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +  G+ +   ++   G      M         ++   +FAT  G     K SD 
Sbjct: 561 LPSA--RGLGEPVTGRVNPIAGAEFMATM------MGEDDDKFLFATDAGYGFVAKFSDL 612

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +   R+GK  + L S  +++   +         +  +  G+ + FP++ +   A     G
Sbjct: 613 VTKTRNGKAFLNLPSGSKVVKPCSVKDSASQFCVAVSNEGRMLVFPLADLPELA--KGKG 670

Query: 724 VRGI-------SLAKGDQVISMAIVLHADA 746
            + I        L + + +I++  +   D+
Sbjct: 671 NKIISIPTAKLKLRE-EFMIAVTAIGEDDS 699


>gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
 gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44]
          Length = 796

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/791 (30%), Positives = 375/791 (47%), Gaps = 99/791 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQTTLDLSQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKK-------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++          VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 60  DRMGLGYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 119

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 120 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPF 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL- 232
            L+NG  GIAVG+AT IP+HNL EV   CVA+I  P +  + L+ +I GPD+P G  I+ 
Sbjct: 180 SLLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIIS 239

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I +AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 240 SSSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKV 299

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 300 KTGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTS 359

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+ ++    +P + +L  +L+ ++AFR + V RR+++ L K  DR H+L G  
Sbjct: 360 LESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQ 419

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P+ A                                   LSE
Sbjct: 420 AVLLNIDKVIAIIRASDEPKQA-----------------------------LIDAFNLSE 450

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S + +  +I +E+ +    
Sbjct: 451 RQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMRRLICKEIEADAKT 510

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT ++     +  E  +V E   V +S  G+V        R ++  G     +  
Sbjct: 511 FGDARRT-LIHEEKKVVAEVKVVDEPTTVIISEKGWV--------RTRQGHGVDAGTLSF 561

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G VY   V  LP G     G+ +  ++ L  G ++ 
Sbjct: 562 KAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGD--GQPVTTMIELEAGTQLL 619

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                        +  ++ +          + D +   ++GK  + L   + + +     
Sbjct: 620 YYFA------GSESTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVH 673

Query: 692 Q----------------------ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                   + ++  +  G+ + F I+ ++    +   G+  ISL
Sbjct: 674 GVPMNARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMP-KGGRGLMLISL 732

Query: 730 AKGDQVISMAI 740
              DQ+   A 
Sbjct: 733 EDKDQLAGAAA 743


>gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
 gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165]
          Length = 735

 Score =  535 bits (1378), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/723 (32%), Positives = 377/723 (52%), Gaps = 63/723 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GK+HPHG+ A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE +L 
Sbjct: 61  GDVLGKFHPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLS 119

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP HN+ 
Sbjct: 120 KMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNIN 179

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSH 255
           E+    V ++DNP   L  ++++++GPD+PT   +I  R+ I   Y  GRGSI +R V  
Sbjct: 180 ELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWK 239

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIEL 314
            E+ +     IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +   R+V+E 
Sbjct: 240 REENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEP 294

Query: 315 KRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           +      D +++ L+  T L+  + +NM  +    KP    L+ IL  ++AFR   V RR
Sbjct: 295 RSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDGKPAVKNLLTILTEWLAFRRTTVTRR 354

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + L+K   R H+L GL IA  N+DEV+ IIR   NP   + EL+ R            
Sbjct: 355 LNFRLDKIISRLHILEGLMIAFLNIDEVIEIIRNEDNP---KAELIAR------------ 399

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q  AIL LRL  L  L   +++ E   L  E +    IL 
Sbjct: 400 --------------FQLSDEQAEAILNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILG 445

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           S  RL  +IK+E+ +      +PRR+ +VE      + + D    E + V +S  G+V  
Sbjct: 446 SERRLNNLIKKEIEADAKAFASPRRSPLVERAEAKAISESDLTPTEPVTVILSEKGWV-- 503

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  +        +  +  D         ++  V+F  S G  Y      LP   
Sbjct: 504 ------RCAKGHDIDVQNLSYKAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLPSA- 556

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +++G+ +   +SL  G  +  ++       +  +  V+ A+  G     +  D +  N+
Sbjct: 557 -RSQGEPITGKISLPDGATVQCVL------MAEESRKVLMASDSGYGFICQFEDLVSRNK 609

Query: 671 SGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +GK  + L    ++L  +   +  +  ++  +  G+ + FP+S +   +     G + I+
Sbjct: 610 AGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVSELPELS--KGKGNKIIN 667

Query: 729 LAK 731
           ++ 
Sbjct: 668 ISA 670



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+ +S   GD  ++ A                 +      L S  ++    
Sbjct: 504 RCAKGHDIDVQNLSYKAGDSYLAHAYGKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPI 563

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S  +G   +  C  +  + + +L  S+ G+G      D    N++GK + +   + 
Sbjct: 564 TGKISLPDGATVQ--CVLMAEESRKVLMASDSGYGFICQFEDLVSRNKAGKAVISLTENA 621

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L       + + ++ +S+ G ++  PV+E+   S+  KG  I + +
Sbjct: 622 KVLPPQL---LKEGEENLLVAMSNTGRVLVFPVSELPELSK-GKGNKIINIS 669


>gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2]
          Length = 803

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/791 (30%), Positives = 375/791 (47%), Gaps = 99/791 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 8   MSDQTTLDLSQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAM 66

Query: 61  MQMGVEWNKK-------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++          VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 67  DRMGLGYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 126

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 127 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPF 186

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL- 232
            L+NG  GIAVG+AT IP+HNL EV   CVA+I  P +  + L+ +I GPD+P G  I+ 
Sbjct: 187 SLLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIIS 246

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I +AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 247 SSSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKV 306

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 307 KTGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTS 366

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+ ++    +P + +L  +L+ ++AFR + V RR+++ L K  DR H+L G  
Sbjct: 367 LESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQ 426

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P+ A                                   LSE
Sbjct: 427 AVLLNIDKVIAIIRASDEPKQA-----------------------------LIDAFNLSE 457

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S + +  +I +E+ +    
Sbjct: 458 RQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMRRLICKEIEADAKT 517

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT ++     +  E  +V E   V +S  G+V        R ++  G   + +  
Sbjct: 518 FGDARRT-LIHEEKKVVAEVKVVDEPTTVIISEKGWV--------RTRQGHGVDAATLSF 568

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G VY   V  LP G     G+ +  ++ L  G ++ 
Sbjct: 569 KAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGD--GQPVTTMIELEAGTQLL 626

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                           ++ +          + D +   ++GK  + L   + + +     
Sbjct: 627 YYFA------GSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVH 680

Query: 692 Q----------------------ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                                   + ++  +  G+ + F I+ ++    +   G+  ISL
Sbjct: 681 GVPMNARAEHVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMP-KGGRGLMLISL 739

Query: 730 AKGDQVISMAI 740
              DQ+   A 
Sbjct: 740 EDKDQLAGAAA 750


>gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
 gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1]
          Length = 796

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/785 (31%), Positives = 375/785 (47%), Gaps = 87/785 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQTTLDLSQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVSDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKK-------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++          VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 60  ERMGLSYSGPNGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 119

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 120 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPKQLPARLPF 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL- 232
            L+NG  GIAVG+AT IP+HNL EV   CVA+I  P +  + L+ +I GPD+P G  I+ 
Sbjct: 180 SLLNGASGIAVGLATEIPSHNLPEVAAACVALIKKPQLPEEELLALIPGPDYPGGGQIIS 239

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I +AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 240 SSSDIADAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGVSAQKVLEEIEDITNPKV 299

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 300 KTGKKALSQEQTQLKASMLAVLDCVRDESSKDAPVRIVFEPKTGKIPQSELITALLAHTS 359

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+ ++    +P + +L  +L+ ++AFR + V RR+++ L K  DR H+L G  
Sbjct: 360 LESSSSINLTSIGLDGRPVQKSLRQMLEEWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQ 419

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P+ A                                   LSE
Sbjct: 420 AVLLNIDKVIAIIRASDEPKQA-----------------------------LIEAFNLSE 450

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S + +  +I +E+ +    
Sbjct: 451 RQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGSEATMRRLICKEIEADAKT 510

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT ++     +  E  +V E   V +S  G+V        R ++  G   + +  
Sbjct: 511 FGDARRT-LIHEEKKVVAEVKVVDEPTTVIISEKGWV--------RTRQGHGVDAATLSF 561

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G VY   V  LP G     G+ +  ++ L  G ++ 
Sbjct: 562 KAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGD--GQPVTTMIELEAGTQLL 619

Query: 632 TIMPFPE-----------DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
                 E              + N   +V   K G               S    + +++
Sbjct: 620 YYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMNA 679

Query: 681 RDEILS-----VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           R E +             + ++  +  G+ + F I+ ++    +   G+  ISL   DQ+
Sbjct: 680 RAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMP-KGGRGLMLISLEDKDQL 738

Query: 736 ISMAI 740
              A 
Sbjct: 739 AGAAA 743


>gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
 gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK]
          Length = 756

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/739 (32%), Positives = 385/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  V ++DNP  DLD LME ++GPD+PT   +I     +
Sbjct: 173 ITGIAVGMATDIPPHNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y +GRGSI +R + H E        IV+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 KKVYKSGRGSIRMRAIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     ++ ++N L+  T L+  F VN+  L    +P    L
Sbjct: 288 DLRDESDHENPTRIVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ FR   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   NP   +
Sbjct: 348 LEIITEWLVFRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS +Q  AILE++L +L  L    IR
Sbjct: 405 AELMSR--------------------------FELSVIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E      +L S  RL  +IK+E+ +  ++    RR+ +VE        + D 
Sbjct: 439 GEQDELAKERDYLEKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      + +  +  D         ++   +  
Sbjct: 499 IPSEAITVVLSEKGWI--------RHAKGYDVDPTSLSYKSGDNYLAHARGKSNLPAILI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  +  ++   +++        +  +
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPVTGRLNLTPGTNLRQVLMADDEQMW------LMGS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +  + ++++ +  +    ++IL+ T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  
Sbjct: 584 TNLRQVLMADDEQMWLMGSDAGYGFICKSTDMVSKNKSGKALLTV-----PEKAKVMAPQ 638

Query: 846 PVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           P++  D D+I++++++G ++  P+ ++    +  KG  I +
Sbjct: 639 PISNLDTDEILVITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 759

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 245/739 (33%), Positives = 386/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  V +IDNP  DLDALME ++GPD+PT   +I  +  +
Sbjct: 173 VTGIAVGMATDIPPHNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y +GRGSI +R V H E        IV+T +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 KKVYKSGRGSIKMRAVWHKENGD-----IVITALPHQTSGAKLLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  F  N+  L    +P+   L
Sbjct: 288 DLRDESDHENPTRIVIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ +R   V RR +Y L+K   R H+L GL  A  N+DEV+ IIR   +P   +
Sbjct: 348 VQIIAEWLEYRRTTVRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS +Q  AILE++L +L  L    IR
Sbjct: 405 AELMSR--------------------------FDLSAIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +L S  RL  +IK+E+LS  ++    RR+ +VE        + D 
Sbjct: 439 GEQDELSKEREQLEKLLGSERRLNTLIKKEILSDAEKYGDERRSPLVEREEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      + +  +  D         ++   +F 
Sbjct: 499 IPSEAITVVLSDKGWI--------RHAKGHEVDPTTLSYKSGDNYLAHARGKSNQPAIFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  +  ++   +++        + A+
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPITGRLNLTPGTNMRQVLMAEDEQLW------LMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +     +L  +       ++IL  T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILAITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +   EQ  L  S+ G+G    S D    N+SGK   A      N      AV 
Sbjct: 584 TNMRQVLMAEDEQLWLMASDAGYGFICKSTDMVSKNKSGK---ALLTVPEN-----AAVL 635

Query: 846 P---VN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           P   V+  D+D+I+ ++++G ++  P+ ++    +  KG  I +
Sbjct: 636 PPQPVDNIDSDEILAITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 748

 Score =  535 bits (1377), Expect = e-149,   Method: Composition-based stats.
 Identities = 233/729 (31%), Positives = 368/729 (50%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   EINYEGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL E+ D  V ++DNP   LD ++ +++GPDFPT   +I  +  I+  Y  GRG
Sbjct: 182 TDIPPHNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   E        I++T +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SVKMRAVWKKEDGE-----IIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +     ++ ++  L+  T L+  + VNM  +    KP    L+ IL  +++
Sbjct: 297 NPVRIVLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDNKPAVKNLLQILTEWLS 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+            
Sbjct: 357 FRRSTVTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIRNEDEPK------------ 404

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L   +++ E + L  E
Sbjct: 405 -----------------PVLMARFELSDEQAEAILNLRLRHLAKLEEHELQAEKDQLEQE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             +   ILSS  RL  +IK+E+        +PRR+ IVE      + + + I  E + V 
Sbjct: 448 RAQLEQILSSERRLNTLIKKEIQQDAKTYASPRRSPIVERAEAKAISESEMIPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +       G+  +  D         +    +F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPQGLNYKAGDKYLAHACGKSSQPAVFIDSSGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G                 N  ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLTLPAGA------SVDYLLIENENQQLLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP+  +   +   
Sbjct: 612 FEDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVALTAAGRMLIFPVKDLPSLS--K 669

Query: 721 SVGVRGISL 729
             G + +++
Sbjct: 670 GKGNKIVTI 678


>gi|13507862|ref|NP_109811.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
 gi|2501298|sp|P75352|PARC_MYCPN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1673679|gb|AAB95679.1| topoisomerase IV subunit A [Mycoplasma pneumoniae M129]
          Length = 789

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 229/742 (30%), Positives = 365/742 (49%), Gaps = 42/742 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E+ ++ +   +I D    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   EKNKQALLLQAIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+A+IYDA+ RM+Q W   L  I   GN GS+DGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S  EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTEARLSPYGFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+GE++DG    I+NPD DL A+++I++GPDFPTG ++     + N Y TG+G  V
Sbjct: 182 IAPHNVGELLDGLSYRIENPDCDLKAILKIVKGPDFPTGGLVYFEQELANIYQTGKGKFV 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+        +  + QIV+TEIPY+  KA ++++I EL+ + ++  +  + D SDR G R
Sbjct: 242 IQAKYETNT-AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR 300

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I  K   SAD I+  L+++T LQ  F++N   +    P R  L+     F+AF  E++
Sbjct: 301 IIINHKDFLSADKIMAFLFKHTQLQVNFNLNNTVIANRCPVRVGLLAYFDQFLAFAHELI 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           +   KY L  A  R  ++ GL  AV+ +DE++R+IR + + + A+ +L+ +         
Sbjct: 361 INSAKYDLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDK--------- 411

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT      +  E   L   I+    
Sbjct: 412 -----------------YAFTLNQAEAIVSLRLYQLTNTDIKVLFAEQKELEQTIQTAER 454

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGY 547
           +++       +++ +    K + + PRR +IV  +   + +  D I  +++ + +SH G 
Sbjct: 455 LIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVGLIEKQKVQDSDFIEHKEVGLLISHDGI 514

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
                   ++ +             ++D +    +V         +SLG +    +++  
Sbjct: 515 Y-------FKFEPEQLAKHLVEFKSEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTL 567

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +     + L     L + E++        D+       +V  ++ G V+R +LS  I 
Sbjct: 568 SNTKTKMNELLAKKPILMEDEKLVLAGIVNPDK--MEQQLLVLTSQCGMVKRVELSKVIN 625

Query: 668 INRSGKI-AMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             +      M L  RD++++    T+     + L +       F    I        +GV
Sbjct: 626 TKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFATFLAEEI-PIISNKGIGV 684

Query: 725 RGISLAKGDQVISMAIVLHADA 746
           +GI L   ++V     +   DA
Sbjct: 685 KGIKLKAEEKVRFAMPLQDNDA 706



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           ++ DQ+I   +V ++D  +              + +S    ++  L     +     +  
Sbjct: 532 SEQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLV 591

Query: 790 CQELKLK---EQFILTVSEK-GFGKRTSSYDFRISNRSGKGIR---ATDVSKINEIGALV 842
              +      EQ +L ++ + G  KR      ++ N   K I+      + + ++   LV
Sbjct: 592 LAGIVNPDKMEQQLLVLTSQCGMVKRVELS--KVIN--TKQIKSSCCMALRERDK---LV 644

Query: 843 AVFPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
             F     +   + LVS   +       EI I S    GV       +E+V     ++++
Sbjct: 645 NAFVQTKGEPKLVCLVSSSNSFATFLAEEIPIISNKGIGVKGIKLKAEEKVRFAMPLQDN 704

Query: 901 E 901
           +
Sbjct: 705 D 705



 Score = 45.6 bits (106), Expect = 0.042,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 82/213 (38%), Gaps = 17/213 (7%)

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV-----FAGRNSVGVRGISLAKGDQ 734
            +D+++        +   + T LG  +  PI               +   + I L + ++
Sbjct: 533 EQDQLIFGGVVQNSDYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAK--KPI-LMEDEK 589

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISG--DTEEITSLKNDSSVEGNISEERCQE 792
           ++   IV     +    +   +    +R  +S   +T++I S    +  E +       +
Sbjct: 590 LVLAGIVNPDKMEQQLLVLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQ 649

Query: 793 LKLKEQFI-LTVSEKGFGKRT-SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
            K + + + L  S   F   T  + +  I +  G G++   +    +   +    P+ DN
Sbjct: 650 TKGEPKLVCLVSSSNSFA--TFLAEEIPIISNKGIGVKGIKLKAEEK---VRFAMPLQDN 704

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           D +++++  G +    V E+ +ASR + G  + 
Sbjct: 705 DALVVINSDGGVYNFEVVELAVASRMSVGKKLI 737


>gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 753

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 238/726 (32%), Positives = 374/726 (51%), Gaps = 65/726 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+ +EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E  +L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQEALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDNRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVF 716
           S +   
Sbjct: 666 SDLPQL 671


>gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7]
          Length = 751

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 384/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +LSS S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLSSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  + + V +S  G+V        R  +      +G+  +  D      I  ++   +F 
Sbjct: 502 MPTQPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
 gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1]
          Length = 785

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/779 (31%), Positives = 376/779 (48%), Gaps = 86/779 (11%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+++   + +  + +    + +    Q +YL YA++V+ GRA+PD+ DG+KPV RRILF 
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYV-------KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +            K AR+ G+V+G++HPHG+ + YDAL R+AQD+S R  LI+
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL + A  LLD++ + TVDF PNYDGS +EP  L AR P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
             L+NG  GIAVG+AT IP+HNL E+ D CVA++ NP +  + L  ++ GPD+P G  I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQII 240

Query: 233 GRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
              G I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 292 RIVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYT 331
                  L  E                   S     R+V E K G      ++  L  +T
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHT 360

Query: 332 SLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N+  +    KP + +L  +L+ ++AFR++ + RR+++ L K  DR H+L G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              + N+DEV+ IIR S  P+ A                LI+                LS
Sbjct: 421 QTVLLNIDEVIAIIRASDEPKAA----------------LIER-------------FRLS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +   
Sbjct: 452 DRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           +    RRT I         E  +V E + V VS  G+V        RA++  G       
Sbjct: 512 QFADARRTLIQADKRA-TAEVKVVDEPVTVVVSQKGWV--------RARQGHGHDAGTFA 562

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D +   F   T  +++ F S G VY   V +LP       G+ +  ++ L  G + 
Sbjct: 563 FKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGD--GQPITTLIDLEAGTQP 620

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SV 687
                         N  ++ A   G      +      NR GK  + L   +++      
Sbjct: 621 VHYFA------GPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHA 674

Query: 688 ETCTQEN------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
              +          +   +  G+ + F I+ ++  A     G+  I L   D +   A 
Sbjct: 675 AFTSGSQPLAPATHVCCASAGGRILTFEITELKQMAN-GGRGLMLIDLEPKDTLAGAAA 732


>gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7]
          Length = 745

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 379/740 (51%), Gaps = 55/740 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K 
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 123 ANMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ ++ NP++    L++ +  PD P T  +I  +  +   Y TG+GS  +R
Sbjct: 183 HNLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
              H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+
Sbjct: 243 ATYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRI 300

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEV 368
           VIELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ V
Sbjct: 301 VIELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+                 
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPK----------------- 403

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       I       L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 404 ------------IELMTRFGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLG 546
           + L++   L  ++  EL +        RR+ +V+       +  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      + +  R  D      +  +   ++   + G  Y      L
Sbjct: 512 WI--------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G  + ++L+L  G +I  ++       +  +  V+ A+  G    N+L++  
Sbjct: 564 PSA--RTQGDPITSLLNLPAGAKIDQLL---FYNQTNGSPNVLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +SGK ++ L     +  V     ++ + ++   G  + F    +   A     G + 
Sbjct: 619 TAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKL 676

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L  G+ + ++  +   DA
Sbjct: 677 ANLKAGETITAITALSDTDA 696


>gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
 gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3]
          Length = 752

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/754 (32%), Positives = 402/754 (53%), Gaps = 70/754 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S+E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   SNEITFDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
             KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  + +ID+P  +L  +ME ++GPD+PT   +I  ++ I+  Y TG
Sbjct: 181 MATDIPPHNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYKTG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  +      D +++ L+  T L+  F VN+  +    +P+   L+ ILK +
Sbjct: 296 HENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++E+Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITEIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E ++   +L S  RL  +IK+E+ +  D+    RR+ +VE      M + D +  E + 
Sbjct: 447 KEREKLEKLLGSERRLNTLIKKEIQADADKYGDDRRSPLVERAEAKAMTERDLVPSEPIT 506

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G++        R  +       G+  +  D         ++   +F  S G  Y
Sbjct: 507 VVLSEKGWI--------RHAKGHEVDAEGLNYKSGDKFLASAKGKSNQQAVFLGSDGRSY 558

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             +   LP    +++G+ +   L+++ G  I  ++   +++        +  +  G    
Sbjct: 559 SLESHSLPSA--RSQGEPITGRLNISAGTSIRQVVMGEDEQLW------LVGSDAGYGFV 610

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFA 717
            K SD +  N+SGK  + L    E+++         N IL  T  G+ + FPI  +   +
Sbjct: 611 CKGSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESNQILAITNQGRMLLFPIKDLPQLS 670

Query: 718 GRNSVGVRGISL-----AKGDQVIS--MAIVLHA 744
                G + I++      + ++ +S  MAI  +A
Sbjct: 671 --KGKGNKIINIPSAKAKEREEFVSHLMAIPENA 702



 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 16/183 (8%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   GD+ ++ A                 +      L S  ++        +   G  
Sbjct: 527 GLNYKSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNISAGTS 586

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
              R   +   EQ  L  S+ G+G      D    N+SGK +     S       ++A  
Sbjct: 587 I--RQVVMGEDEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQSS-----EVIAPS 639

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERI 897
           P+ D  ++QI+ ++++G ++  P+ ++   S+  KG  I +        ++E V  +  I
Sbjct: 640 PIADLESNQILAITNQGRMLLFPIKDLPQLSK-GKGNKIINIPSAKAKEREEFVSHLMAI 698

Query: 898 RES 900
            E+
Sbjct: 699 PEN 701


>gi|71894081|ref|YP_278189.1| DNA topoisomerase IV subunit A [Mycoplasma synoviae 53]
 gi|71850869|gb|AAZ43478.1| topoisomerase IV subunit A [Mycoplasma synoviae 53]
          Length = 860

 Score =  534 bits (1376), Expect = e-149,   Method: Composition-based stats.
 Identities = 227/801 (28%), Positives = 384/801 (47%), Gaps = 40/801 (4%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S +E  + I + S+   M+  + TY+  VI  RAIPD+RDGLKPVHRRIL+ M  +G+++
Sbjct: 2   SKKEIIEKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +KK+ K ARI G+V+GKYHPHG+ ++Y+A+  +AQ W + + L+   GN GS+D D  AA
Sbjct: 62  DKKFKKSARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A++++ D+ K TV F PN+D S  EP+VL + +PN+LVNG  GIA+GMA
Sbjct: 122 MRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-- 245
           T +P HNLGE++D CV  I +P      L   + GPDFPTG VI G  GI  A   GR  
Sbjct: 182 TEMPPHNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGGVIKGTKGIAEALENGRNE 241

Query: 246 -GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
              I +     I    G  + I +TEIPY V K  ++ +I  +++ K I  I +++D SD
Sbjct: 242 KNKIKLFCKYEIYT-KGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSD 300

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R G  ++I L   ++ + ILN L+  T +Q  +S N + ++   P    L  ++ +++A 
Sbjct: 301 RDGINILITLDINSNEESILNYLFSKTQMQITYSYNNIVIDNNSPTLMNLENLISSYIAH 360

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            + V      Y LNKA+ R  ++ G         +V+ +IR +   +      + +    
Sbjct: 361 IKNVKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQV--- 417

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +++Q  +I ELRL +L+   ++    E   +   I
Sbjct: 418 ----------------------FNFTKLQAESIAELRLYKLSQTDKEIYLKEKVEVKETI 455

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTV 542
               ++L++       +  E+ ++K E   PR+T+I E   ++     D +  E + V++
Sbjct: 456 NIIENLLNNEKEFNNFLINEIKAIKKEFSVPRKTQIEEKDFEVSYNKLDLVKEEIINVSI 515

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++KR     +  +           ++++D +     V+T   +L F++LG      
Sbjct: 516 SKNGFIKR-----FSDKVLENNEWKNYALKEKDNLVFFSKVNTVNFLLCFTNLGNYVIVA 570

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           ++++     +  G  +   L  +       I+   E      NL V+  TK G  +R  L
Sbjct: 571 IYQIQEVKWKDLGNNI--NLFASDIRPDEEIVSVIEVSDFEENLSVMLGTKQGYFKRVML 628

Query: 663 SDFIQINRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            DF+    + K  AM L+  D ++  +    ++ ++  T+     +F  S I +F    +
Sbjct: 629 KDFLVSRFTKKYTAMPLNEDDYLIKAKLTNLDSYLVAITENSIISKFSESEI-MFYSTKA 687

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G + I  + GD++ +  I  + D  +            +  ++            D   
Sbjct: 688 RGSKAIYFSVGDKLSNFTIASYGDEIFAFSSDLNYFYFNEADIVLTPKNIKGRNIFDKKY 747

Query: 782 EGNISEERCQELKLKEQFILT 802
           +         E  L   F+  
Sbjct: 748 KLQNKNYLLFEDALATDFLYF 768



 Score = 45.2 bits (105), Expect = 0.060,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 84/250 (33%), Gaps = 29/250 (11%)

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL--------------TTKLGQC 705
           N   +F     +   A+K          +   ++ ++                 +K G  
Sbjct: 463 NNEKEFNNFLINEIKAIK-KEFSVPRKTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFI 521

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
            RF    +     +N        L + D ++  + V   +            + A  ++ 
Sbjct: 522 KRFSDKVLENNEWKNYA------LKEKDNLVFFSKVNTVNFLLCFTNLGNYVIVAIYQIQ 575

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELK----LKEQFILTVSEKGFGKRTSSYDFRISN 821
               +++ +  N  + +    EE    ++     +   ++  +++G+ KR    DF + +
Sbjct: 576 EVKWKDLGNNINLFASDIRPDEEIVSVIEVSDFEENLSVMLGTKQGYFKRVMLKDF-LVS 634

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R  K   A  +   NE   L+     N +  ++ +++   + +   +EI   S   +G  
Sbjct: 635 RFTKKYTAMPL---NEDDYLIKAKLTNLDSYLVAITENSIISKFSESEIMFYSTKARGSK 691

Query: 882 IFSTAKDERV 891
               +  +++
Sbjct: 692 AIYFSVGDKL 701


>gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
 gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1]
          Length = 769

 Score =  534 bits (1375), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/752 (32%), Positives = 363/752 (48%), Gaps = 73/752 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK----KYVKC 74
           +++    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M ++G+ +      K +K 
Sbjct: 17  ITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERLGLAFTTAGGPKAMKS 76

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+G+YHPHG+ A YDAL RMAQD+S R  LI+GQGNFGS DGD  AA RYTE R
Sbjct: 77  ARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEAR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L      LLD++ + TVDF PNYDGS QEP  L AR P VL+NG  GIAVG+AT IP+HN
Sbjct: 137 LAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGASGIAVGLATEIPSHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGV 253
           L EV    VA+I    +  D L  ++ GPD+P G  I+     I++AY +GRGS+ +R  
Sbjct: 197 LREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIRDAYRSGRGSLKVRAK 256

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE----------- 302
             IE  +  +  +VVTE+P   +   +LE+I EL   K       L  E           
Sbjct: 257 WKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKALSAEQTQLKTTVLAV 316

Query: 303 --------SDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERF 352
                         R+V E K R      ++N L  +TSL++  S+N+  +    +P + 
Sbjct: 317 LDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSASINLTMVGADGRPTQK 376

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           ++  +L  ++ FR E V RRT++ L K  DR H+L G  + + N+DEV+RIIR +  P+ 
Sbjct: 377 SMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNIDEVIRIIRNADEPKP 436

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A                LI+                LS+ Q   ILE+RL +L  L    
Sbjct: 437 A----------------LIER-------------FRLSDRQAEDILEIRLRQLARLEAIK 467

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
           I  EL SL  E     +IL+S + L   + +E+ +        RRT I      +  E  
Sbjct: 468 IEQELKSLREEQGRLEEILNSPAALKRTVVKEIEADAKTHGDERRTLIQAEKKAVA-EVK 526

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +V E + V +S  G+V        RA++  G   +    +  D +   F   T  ++L F
Sbjct: 527 VVDEPVTVVISSKGWV--------RARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLLVF 578

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G VY   V  LP       G+ + +++ L  G +               +  ++ A 
Sbjct: 579 GSNGRVYSVAVSGLPGARGD--GQPITSMIELESGTQPQHYFA------GPADATLLLAN 630

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G     K  D     R GK  + L   ++ L          I   +  G+ + F +  
Sbjct: 631 TGGYGLLAKAGDLQSRQRGGKGFLTLAEGEKPLPPSRADAAGQIACLSLGGRLLVFALDD 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           ++    +   G+  + L   D ++S+A     
Sbjct: 691 LK-LQPKGGRGLTLMDLEAKDALVSVAAFDKT 721



 Score = 44.8 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 7/170 (4%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
             +   GD +         D           +  A   L     +            G  
Sbjct: 554 AFAFKAGDTLYGTFECRTVDTLLVFGSNGRVYSVAVSGLPGARGDGQPITSMIELESGTQ 613

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
            +         +  +L  +  G+G    + D +   R GKG       +     +     
Sbjct: 614 PQHYFA--GPADATLLLANTGGYGLLAKAGDLQSRQRGGKGFLTLAEGEKPLPPSRADAA 671

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
                 QI  +S  G L+   ++++++  +  +G+ +      + +VSV 
Sbjct: 672 G-----QIACLSLGGRLLVFALDDLKLQPKGGRGLTLMDLEAKDALVSVA 716


>gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1]
 gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169]
 gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8]
 gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E]
 gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72]
          Length = 745

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 379/740 (51%), Gaps = 55/740 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K 
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 123 ANMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ ++ NP++    L++ +  PD P T  +I  +  +   Y TG+GS  +R
Sbjct: 183 HNLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
              H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+
Sbjct: 243 ATYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRI 300

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEV 368
           VIELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ V
Sbjct: 301 VIELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+                 
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPK----------------- 403

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       I       L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 404 ------------IELMTRFGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLG 546
           + L++   L  ++  EL +        RR+ +V+       +  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      + +  R  D      +  +   ++   + G  Y      L
Sbjct: 512 WI--------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G  + ++L+L  G +I  ++       +  +  V+ A+  G    N+L++  
Sbjct: 564 PSA--RTQGDPITSLLNLPAGAKIDQLL---FYNQTNGSPNVLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +SGK ++ L     +  V     ++ + ++   G  + F    +   A     G + 
Sbjct: 619 TAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKL 676

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L  G+ + ++  +   DA
Sbjct: 677 ANLKAGETITAITALSDTDA 696


>gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
 gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1]
          Length = 754

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 390/749 (52%), Gaps = 70/749 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++++  S      G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDNLADSL----DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+ QEP+VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVD 295
              Y TG+GS+ +R V H+E        I+VT +P+QV+ A +LE+IA L++ K  +   
Sbjct: 236 LKMYETGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKAPQ 290

Query: 296 IADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           IADLRDESD +     V+I +      + ++  L+  T L+S + VN+  +    KP+  
Sbjct: 291 IADLRDESDHENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P  
Sbjct: 351 NLRALLVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP-- 408

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + +L++R                            LSE+Q   IL+ RL +L  L    
Sbjct: 409 -KAKLIER--------------------------FALSEIQADYILDTRLRQLARLEEMK 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R+E + L  E  +   +LSS ++L  +++ ELL   +     RR+ IVE        + 
Sbjct: 442 LRDEQDELLKEQAKLQALLSSEAKLKKLVRSELLKDAETYGDDRRSPIVERAEAKALTEH 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D +  E + V +S  G++        R+ +      +G+  +  D         ++ S +
Sbjct: 502 DLLPNEKVTVVLSEKGWI--------RSAKGHEIDATGLSYKAGDGFKTSAAGRSNQSAV 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  Y      LP    + +G+ L   L+   G     ++          +   V 
Sbjct: 554 VIDSTGRSYSLATHTLPSA--RGQGEPLTGRLTPPPGATFECVL------MPEEDSLYVI 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  ++++       + N +   T  G+ + F
Sbjct: 606 ASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADREHNWLASVTTEGRLLIF 665

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            IS +         G + I ++ G++V S
Sbjct: 666 KISDLPQLG--KGKGNKIIGIS-GERVAS 691



 Score = 44.4 bits (103), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 24/195 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD            ++    +      S      +  +     
Sbjct: 520 RSAKGHEIDATGLSYKAGD---GFKTSAAGRSNQSAVVIDSTGRSYSLATHTLPSARGQG 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L  +E  +  + S+ G+G      D +  N++GK + +   +
Sbjct: 577 EPLTGRLTPPPGATFECVLMPEEDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNN 636

Query: 834 KINEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                  ++A  PV D +   +  V+ +G L+   ++++    +  KG  I   +  ERV
Sbjct: 637 A-----KVIAPRPVADREHNWLASVTTEGRLLIFKISDLPQLGK-GKGNKIIGIS-GERV 689

Query: 892 VS-------VERIRE 899
            S       +  + E
Sbjct: 690 ASREEYVTDIAVLPE 704


>gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1]
          Length = 745

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 380/740 (51%), Gaps = 55/740 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K 
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 123 ANMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ ++ NP++    L++ +  PD P T  +I  +  +   Y TG+GS  +R
Sbjct: 183 HNLHEVVKACIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
              H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+
Sbjct: 243 ATYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRI 300

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEV 368
           VIELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ V
Sbjct: 301 VIELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+                 
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPK----------------- 403

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       I       L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 404 ------------IELMTRFGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLG 546
           + L++   L  ++  EL++        RR+ +V+       +  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELIADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      + +  R  D      +  +   ++   + G  Y      L
Sbjct: 512 WI--------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G  + ++L+L  G +I  ++       +  +  V+ A+  G    N+L++  
Sbjct: 564 PSA--RTQGDPITSLLNLPAGAKIDQLL---FYNQTNGSPNVLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +SGK ++ L     +  V     ++ + ++   G  + F    +   A     G + 
Sbjct: 619 TAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKL 676

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L  G+ + ++  +   DA
Sbjct: 677 ANLKAGETITAITALSDTDA 696


>gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
 gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans
           ES-2]
          Length = 798

 Score =  533 bits (1374), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/773 (30%), Positives = 367/773 (47%), Gaps = 73/773 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V +    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+  N  +VK AR+ 
Sbjct: 44  VPLAQYAERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSARVV 103

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GK+HPHG+++ YDA+ R+AQ++SLR  L++GQGNFGS DGD  AA RYTE RL   
Sbjct: 104 GEVLGKFHPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLTPI 163

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +L   TVD  PNYDG FQEP +L AR P VL+NG  GIAVGMAT IP+HNL E+
Sbjct: 164 AAVLLSELDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLREI 223

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIE 257
                  + NPD   + ++  I GPD P+GA I+     I+  Y TGRGS+ +R    +E
Sbjct: 224 GGAAALCVRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWSVE 283

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR----------------- 300
           + +  + ++ V E+P+ V+   ++E+I EL   K  +    L                  
Sbjct: 284 ELARGQWRVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLDKV 343

Query: 301 -DESDR-QGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIG 356
            DESD+ Q  R+V E K G  + + ++  L  +TSL+   S+NMV +    +P++  +  
Sbjct: 344 ADESDKDQAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDGRPKQKAITD 403

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           I++ +  FR   V RR  Y L++  DR HVL G      NLDEV+RIIR S +P+ A   
Sbjct: 404 IIREWAQFRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVA--- 460

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LS+ Q   ILE+RL +L  +    I  E
Sbjct: 461 --------------------------LIARFELSDRQAEDILEIRLRQLARMEGIKIERE 494

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  L  E  +   +L+S S L   + +E+          RRT I      +     +V E
Sbjct: 495 LKGLQEEGADLNKMLASESLLRRRVAREIDEDIKAYGDDRRTLIE-QAERVSLTATVVDE 553

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + V +S   +         R +   G   S V  ++ D +   F   +    +  SS G
Sbjct: 554 PVTVLISQKYW--------GRTRIGHGLDLSAVAFKEGDSLLAAFECRSTDQCIVISSNG 605

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            V    V  LP G            + L     +                 V+ AT    
Sbjct: 606 RVCSIPVSVLPGGRGDG--------VPLTTLVELAAGAKIVRVFCGAAEQNVLLATSASY 657

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVRFPISAI 713
               +LSD I  N++GK  + +   DE++        +++  ++  ++ G+ + F +  +
Sbjct: 658 GFVCQLSDMIGRNKAGKQFITI-EGDELILPPVLYTPSEQAQVISVSRSGRLLSFALPEM 716

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           +  +     G+  + L +GD + S+ +   +      +    +  + +     
Sbjct: 717 KRLSS-GGRGLIVMGLEEGDVLASLMVAEKSKITVISQTASGREQAIRLSEAE 768


>gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 751

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 242/747 (32%), Positives = 382/747 (51%), Gaps = 68/747 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P+HN  EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPSHNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P   +
Sbjct: 351 KTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE+Q   IL+ RL +L  L    +R
Sbjct: 408 AELIAR--------------------------FGLSEIQADYILDTRLRQLARLEEMKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E ++L  E  + L +L S S+L  +++ EL++  +     RR+ IV         + + 
Sbjct: 442 SEQDALRKEQAKLLALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +       G+  +  D      I  ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAIGLSYKAGDGFKTSSIGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L    G     ++         ++   V A+
Sbjct: 554 DSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVL------MPEDDALYVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F I
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQNWLAAVTTEGRLLVFKI 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVIS 737
           S +         G + I +  G++V S
Sbjct: 666 SDLPQLG--KGKGNKIIGI-PGERVAS 689


>gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
 gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937]
          Length = 758

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 387/758 (51%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDMT-------HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+ID PD  LDAL+  ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E  S     +V+T +P+QV+ A +LE+IA  +R K++  I 
Sbjct: 233 RKMYESGRGSVRMRAVWKKEDGS-----VVITALPHQVSGARVLEQIASQMRAKKLPMID 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D+++N L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++AFR + V RR  + L+K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 REILTEWLAFRRDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMAKFGLSDTQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD--MEDEDC 532
            E + L  E  +   +L+S  ++  ++K+E+          RR+ + E      M + D 
Sbjct: 439 GEQDDLAKERDQIQALLASERKMNSLLKKEIQEDAKAYGDERRSPLHERGEAKAMSEHDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 SPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLSYKAGDAYRAAARGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++       + +N  ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGATIEQVL------MAADNQRLLLAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G       +D +  NR GK  + L     +L        ++ +L  T  G+ + FP++
Sbjct: 603 DAGYGFICTFADLVARNRVGKAVLTLPDNAHVLPPLELQRDDDLLLTVTAAGRMLLFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      +  D+++ +  +  
Sbjct: 663 DLPELS--KGKGNKIVSIPAAQLASGDDRILWLLAIAP 698



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +    Q +L  S+ G+G   +  D    NR GK +         +   ++    +  +D 
Sbjct: 591 MAADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTL-----PDNAHVLPPLELQRDDD 645

Query: 853 IIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           ++L V+  G ++  PV ++   S+           K  ++VS+
Sbjct: 646 LLLTVTAAGRMLLFPVADLPELSK----------GKGNKIVSI 678


>gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9]
 gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9]
          Length = 756

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 241/739 (32%), Positives = 386/739 (52%), Gaps = 70/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+  +        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVSM-------DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP +L AR P++L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV +  V ++DNP  DLD LM  ++GPD+PT   +I     +
Sbjct: 173 ITGIAVGMATDIPPHNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  YATGRGSI +R + H E        IV+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 KKVYATGRGSIRMRAIWHKENGD-----IVITALPHQVSGAKLLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     ++ ++N L+  T L+  F VN+  L    +P    L
Sbjct: 288 DLRDESDHENPTRIVIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + I+  ++ FR   V RR +Y L+K   R H+L GL  A  NLDEV+ IIR   NP   +
Sbjct: 348 LEIITEWLVFRRSTVRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS +Q  AILE++L +L  L    IR
Sbjct: 405 AELMSR--------------------------FDLSVIQADAILEIKLRQLAKLEEIKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E + L  E      +L S  RL  +IK+E+ +  ++    RR+ +VE        + D 
Sbjct: 439 SEQDELAKERDYLDKLLGSERRLSTLIKKEIQADAEKYGDDRRSPLVERAEAKALTERDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G++        R  +      + +  +  D         ++   +  
Sbjct: 499 IPSEAITVVLSEKGWI--------RHAKGYDVDPTSLSYKSGDNYLAHARGKSNLPAILI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ +   L+L  G  +  ++   +++        +  +
Sbjct: 551 GSDGRSYALESHSLPSA--RSQGEPVTGRLNLTPGTNLRQVLMADDEQMW------LMGS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     K +D +  N+SGK  + +  + ++++ +  +    ++IL+ T  G+ + FPI
Sbjct: 603 DAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEGRMLLFPI 662

Query: 711 SAIRVFAGRNSVGVRGISL 729
             +         G + I++
Sbjct: 663 KDLPQLG--KGKGNKIINI 679



 Score = 43.2 bits (100), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +  R   +   EQ  L  S+ G+G    S D    N+SGK +         E   ++A  
Sbjct: 584 TNLRQVLMADDEQMWLMGSDAGYGFICKSTDMVSKNKSGKALLTV-----PEKAKVMAPQ 638

Query: 846 PVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           P++  D D+I++++++G ++  P+ ++    +  KG  I +
Sbjct: 639 PISNLDTDEILVITNEGRMLLFPIKDLPQLGK-GKGNKIIN 678


>gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
 gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602]
          Length = 757

 Score =  533 bits (1373), Expect = e-149,   Method: Composition-based stats.
 Identities = 239/758 (31%), Positives = 380/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEMT-------HDGTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNNAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+++ P+  L+ L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +G+GS+ +R V H E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKMYESGKGSVRMRAVWHKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++N L+  T L+  + +NM  +   ++P+   L
Sbjct: 288 DLRDESDHENPTRLVVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDHRPQVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++A+R + V RR  + L+K   R H+L GL  A  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLAYRRDTVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFELSDTQAEAILELKLRHLAKLEETKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   +L+S  +L  +I++E+ +  +     RR+ I E      M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLSTLIRKEIQADAEAFGDERRSPITEREEARAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + + +S  G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 IPSEPVTIVLSESGWV--------RSAKGHDIDASGLSYKAGDSFRAAAKGKSNQPVVFM 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L                 + ++  ++ A+
Sbjct: 551 DSTGRSYALDPTTLPSARGQGE--------PLTGKLTPPPGATIEHVLMAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    +          +D +L  T  G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSITAAGRMLLFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      +  D++  + ++  
Sbjct: 663 DLPQLS--KGKGNKIVSIPAAQAASGEDKLAWLLVLPP 698



 Score = 45.6 bits (106), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 28/194 (14%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A            +       A              
Sbjct: 515 RSAKGHDIDASGLSYKAGDSFRAAA--KGKSNQPVVFMDSTGRSYALDPTTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 573 PLTGKLTPPPGATIEHVLMAADDQKLLMASDAGYGFVCTFNDLVARNRAGK---AMITLP 629

Query: 835 INEIGALVAVFP---VNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
            N        FP   ++ +D ++L ++  G ++  PV ++   S+           K  +
Sbjct: 630 DN-----AKAFPPMELHGSDDMLLSITAAGRMLLFPVADLPQLSK----------GKGNK 674

Query: 891 VVSVERIRESEIVD 904
           +VS+   + +   D
Sbjct: 675 IVSIPAAQAASGED 688


>gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
 gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58]
          Length = 787

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 247/755 (32%), Positives = 381/755 (50%), Gaps = 72/755 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             ++   +    I      + +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  +
Sbjct: 24  DGMTDFRDPFDAIKDHPFDEALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLL 83

Query: 64  GVEWNKK---------------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
            +E                   Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+SLR 
Sbjct: 84  RMEPGGASADVLTANPARNTTAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRT 143

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            L++GQGNFG++DGD  AA RYTE RL +AA  L+  L + TVDFRP Y+G  +EP V  
Sbjct: 144 PLVDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVFP 203

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
             +PN+L NG  GIAVGMAT+IP HN+ E++D    +ID+PD D  ALM+I+RGPDFPTG
Sbjct: 204 GLFPNLLANGASGIAVGMATSIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDFPTG 263

Query: 229 AVILGRTGIK-NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
            V++    I   AYATGRG+   R   H E         VVTEIPYQV K+ ++E+IA L
Sbjct: 264 GVLVDSPSIIAEAYATGRGAFRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQIAAL 323

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFSVNMVALN- 345
           + +K++  +AD+RDESD    R+VIE +     D V+++ L+R T L++ F +N+  L+ 
Sbjct: 324 INDKKLPILADVRDESDA-DIRIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVLDS 382

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
            + P    L  +L  ++  + +V+VRR ++ L+K   R  +L G  IA  NLD V+ IIR
Sbjct: 383 THTPRVLGLKPLLVEWLRHQIDVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEIIR 442

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               P+                                     L++ Q  AIL +RL  L
Sbjct: 443 TEDEPKE-----------------------------VMMVEFGLTDRQAEAILNMRLRSL 473

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRI 520
             L   ++R E + L  E  E   ++ S +R    +K++L +++           RRT +
Sbjct: 474 RKLEEMELRREHDELLKERDELEKLVESPARQRTRLKKDLAALRKRYGPETDLGRRRTLV 533

Query: 521 VEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            E     E   E  I RE + V +S  G+++ +      +  R       +  ++ D   
Sbjct: 534 EEAAPAREIPLEAMIEREPITVILSERGWIRAM------SGHRDLAAADTLKFKEGDGPQ 587

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
             F   T   +L  +S G V+     +LP G     G  + +++ ++    I  +MP   
Sbjct: 588 FAFHAYTTDKLLLATSTGRVFTLSSDKLPGGRGF--GDPVRSLVDMDNEGAIVALMP--- 642

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDIL 697
              +     ++ A+  G      ++D +   R GK  + + +   +  V   T + + I 
Sbjct: 643 ---ARAGGDLLLASSDGRGFIAAMADIMAETRKGKQVVNVRAGARLAVVHPVTADADSIA 699

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +  +  + + F IS +   A     GV+      G
Sbjct: 700 VIGENRKLLVFAISEMPRMA--RGQGVQLQRYRDG 732


>gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
 gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25]
          Length = 754

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 388/749 (51%), Gaps = 70/749 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +  S      G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDILADSL----DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVD 295
              Y TG+GS+ +R V HIE        I+VT +P+QV+ A +LE+IA L++ K  ++  
Sbjct: 236 LKMYETGKGSVRMRAVYHIEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQ 290

Query: 296 IADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           +ADLRDESD +   R+VI         +V++  L+  T L+S + VN+  +    KP+  
Sbjct: 291 VADLRDESDHENPCRIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDGKPQLK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR + +P  
Sbjct: 351 NLRNLLVEWLEFRINTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHP-- 408

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + EL+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 409 -KAELIAR--------------------------FELSEIQADYILDTRLRQLARLEEMK 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R+E ++L  E  +   +L S ++L  +++ EL+   +     RR+ IV+        + 
Sbjct: 442 LRDEQDALLKEQAKLQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTET 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E + V +S  G+V        R+ +      +G+  +  D         ++   +
Sbjct: 502 ELLPNEKITVVLSEKGWV--------RSAKGHDIDATGLSYKAGDGFKTAAAGRSNQFAV 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP    + +G+ L   L+   G     ++         ++   V 
Sbjct: 554 FIDSTGRSYSVPAHTLPSA--RGQGEPLTGRLTPPPGANFECVLL------PDDDALYVI 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++          N +   T  G+ + F
Sbjct: 606 ASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTTEGRLLVF 665

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            IS +         G + I +  G++V S
Sbjct: 666 KISDLPQLG--KGKGNKIIGI-PGERVAS 691



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 24/195 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD            ++           S      +  +     
Sbjct: 520 RSAKGHDIDATGLSYKAGD---GFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQG 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L   +  +  + S+ G+G      D +  N++GK + +   +
Sbjct: 577 EPLTGRLTPPPGANFECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNN 636

Query: 834 KINEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                  ++   PV+D +   +  V+ +G L+   ++++    +  KG  I      ERV
Sbjct: 637 A-----KVILPRPVDDRESNWLASVTTEGRLLVFKISDLPQLGK-GKGNKIIGI-PGERV 689

Query: 892 VS-------VERIRE 899
            S       +  I E
Sbjct: 690 ASREEYVTDIAVIPE 704


>gi|193216449|ref|YP_001999691.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
 gi|193001772|gb|ACF06987.1| topoiosmerase IV subunit A [Mycoplasma arthritidis 158L3-1]
          Length = 949

 Score =  533 bits (1372), Expect = e-149,   Method: Composition-based stats.
 Identities = 220/752 (29%), Positives = 373/752 (49%), Gaps = 40/752 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+          + I   ++ D M   +  Y+  +I  RAIPD RDGLKPV RRIL+ M
Sbjct: 1   MTKKQKEEMYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  N+ + K A+I GEVMG+YHPHG+++IY+AL RM+Q+W     LIE  GN GS+
Sbjct: 61  YGLKLYNNQAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL+K +  +L DL +  V   PN+D +  EPVVL +  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT IP HNL EV+D  + +I NP I L+ L +I++GPDFPTG VI G  GI  A
Sbjct: 181 GIAAGFATEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIV---VTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + TG+G I I              +I+   + E P+ V K+ ++  I  LV +K I  + 
Sbjct: 241 FETGQGKINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVK 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++RD+S+R+G  + +EL+  A+A+ I+N L   T L+  ++ NMVA++   P+   L  +
Sbjct: 301 EVRDQSNREGISIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQML 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  +++  +++  +  ++ L K   R  ++ G        DEV+R+I+ S N +    E 
Sbjct: 361 LFTYLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEA 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           +++                         T   + +Q  AI ELRL +L+ + + + +NE 
Sbjct: 421 LEK-------------------------TFGFTNIQATAIAELRLYKLSKMDQLEFQNEA 455

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVR 535
             L I+I  C ++L + +     I ++L  +K E   PR + I +     ++  +     
Sbjct: 456 KELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRTEINTKLLAKN 515

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED    +S  GY+KR+    + +    G       ++D D +     +++ + ++FF++L
Sbjct: 516 EDFYFFLSKEGYIKRISKKAFSSNGFSG-----FKLKDNDAIFYYDKINSLSKLIFFTNL 570

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +      L     +  G  + ++++L   ERI  +M      +       +  TK G
Sbjct: 571 GNYFIIDAHTLKENGWKDIGNHISSLVALENNERIIRVMEIESFNTYSR---FIILTKKG 627

Query: 656 NVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             ++ ++ +F        +  + L   DE+  V    +E  + +    G       + + 
Sbjct: 628 MAKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDEN-VV 686

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                 + G+  I   +  ++ + + +   + 
Sbjct: 687 PEYSLKASGISLIKTDRDQEIEAFSPISPKNK 718



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 89/249 (35%), Gaps = 31/249 (12%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           N  +  F +K G ++R     F     SG    KL   D I   +     + ++  T LG
Sbjct: 515 NEDFYFFLSKEGYIKRISKKAFSSNGFSGF---KLKDNDAIFYYDKINSLSKLIFFTNLG 571

Query: 704 QCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
                    ++   G   +G      ++L   +++I   ++     +   R   +     
Sbjct: 572 NYFIIDAHTLKE-NGWKDIGNHISSLVALENNERII--RVMEIESFNTYSRFIILTKKGM 628

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV----------SEKGFGK 810
            +++   + +     +  S +    ++E C    + ++ +L +           E     
Sbjct: 629 AKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIVNKEKLLFILLTGGLYYLIDEN---- 684

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
                ++ +      GI        +    + A  P++  +++I+++DKG   R  +  +
Sbjct: 685 --VVPEYSLK---ASGISLIKT---DRDQEIEAFSPISPKNKVIIMTDKGQFKRTKMETV 736

Query: 871 RIASRATKG 879
           ++  R++ G
Sbjct: 737 KLVGRSSHG 745


>gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
 gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581]
          Length = 752

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 234/727 (32%), Positives = 368/727 (50%), Gaps = 63/727 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E  +  +S+ +  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++ +  N KY 
Sbjct: 9   EGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELALSANAKYK 68

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RY
Sbjct: 69  KSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPD-DPKSFAAMRY 127

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +LG+ TVD+ PN+DG+  EPVVL AR P+VL+NGG GIAVGMAT+I
Sbjct: 128 TEARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIAVGMATDI 187

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIV 249
           P HN+GEVV+    ++  P+     LM  + GPDFP+ A I+   + ++  Y  GRGS+ 
Sbjct: 188 PPHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYENGRGSVK 247

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
           +R     E+ +     +V+T +PYQV+ A +LE+IA  ++ K++  +ADLRDES   +  
Sbjct: 248 VRARFVREEGN-----VVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHEEPT 302

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+VIE +      + ++  L+  T L+    VNM  +    +P   +L G+L  ++ FR 
Sbjct: 303 RLVIEPRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDGRPRVLSLAGLLSEWLDFRR 362

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             V RR ++ L K  DR H+L GL  A  N+DEV+RIIR    P+ A             
Sbjct: 363 STVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPA------------- 409

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE Q  AILELRL  L  L    IR E + L  E K 
Sbjct: 410 ----------------LMEAFGLSERQAEAILELRLRHLAKLEEMKIRGEQDELEEERKR 453

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSH 544
             ++L + + L  +I++EL +  +E   PRR  IVE        + + +  + + V +S 
Sbjct: 454 LKELLGNEAALTDLIERELRAAGEEYGDPRRAPIVEREEARALSEVELVGADPVTVVLSE 513

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R+ +      +G+  +  D         T+  ++     G  Y     
Sbjct: 514 KGWI--------RSAKGHDIDPAGLSYKAGDRFALAARGKTNQPLVLLDDTGRAYTLTAH 565

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    +++G+ +   +++  G  +  +M              + A+  G      L  
Sbjct: 566 NLPSA--RSQGEPVTGRVNVAAGAHMAGVML------GPPTTRYLLASDGGYGFIAPLEA 617

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVFAGRNSV 722
               ++SGK  + +     +L+     +     +   +  G+ + FP+  +   A     
Sbjct: 618 LTGKSKSGKGVLSVPKGCNVLAPLMVPEGEGISVAAVSNEGRLLVFPLDQLPEMA--KGK 675

Query: 723 GVRGISL 729
           G + I +
Sbjct: 676 GNKMIDI 682


>gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703]
 gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703]
          Length = 757

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 246/758 (32%), Positives = 392/758 (51%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDMT-------HDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA+IDNPD  LDAL++ ++ PDFPT   +I  R  +
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVALIDNPDATLDALLQHVQAPDFPTEAEIITSRDEL 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V   E        +V+T +P+QV+ A +LE+IA  +R K++  I 
Sbjct: 233 RKMYETGRGSVRMRAVWKKEDG-----SVVITALPHQVSGARVLEQIASQMRAKKLPMID 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D+++N L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVLVPRSNRIDLDMVMNHLFATTDLEKSYRINMNMIGLDGRPGVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++AFR + V RR  + L+K   R HVL GL +A  N+DEV+ IIR    P+   
Sbjct: 348 QEILTEWLAFRRDTVRRRLSFRLDKVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMARFGLSDTQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +  DIL+S  ++  ++K+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDQIQDILASERKMSSLLKKEIQADAKAYGDDRRSPLQERAEAKAMSEHDL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + + +S +G+V        R+ +      SG+  +  D         ++  V+F 
Sbjct: 499 SPSEPVTIVLSEMGWV--------RSAKGHDIDPSGLNYKAGDNYRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  +  ++       + +   ++ A+
Sbjct: 551 DSTGRSYALDPLTLPSA--RGQGEPLTGKLTLPPGATVEQVL------MTADEQRLLLAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       SD +  NR GK  + L    ++L     + ++D +L  T  G+ + FP++
Sbjct: 603 DAGYGFICTFSDLVARNRVGKAVLALPDNAKVLPPLEVSHDDDLLLTITAAGRMLLFPVA 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +++      +  D+++ + ++  
Sbjct: 663 DLPQLS--KGKGNKIVAIPAAQAASGEDRILWLQVISP 698



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 63/191 (32%), Gaps = 22/191 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   + A            I       A   L          
Sbjct: 515 RSAKGHDIDPSGLNYKAGDNYRAAA--RGKSNQPVVFIDSTGRSYALDPLTLPSARGQGE 572

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   EQ +L  S+ G+G   +  D    NR GK + A     
Sbjct: 573 PLTGKLTLPPGATVEQVLMTADEQRLLLASDAGYGFICTFSDLVARNRVGKAVLAL---- 628

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
             +   ++    V+ +D ++L ++  G ++  PV ++   S+           K  ++V+
Sbjct: 629 -PDNAKVLPPLEVSHDDDLLLTITAAGRMLLFPVADLPQLSK----------GKGNKIVA 677

Query: 894 VERIRESEIVD 904
           +   + +   D
Sbjct: 678 IPAAQAASGED 688


>gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110]
          Length = 730

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 232/705 (32%), Positives = 364/705 (51%), Gaps = 62/705 (8%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTV 151
           Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T 
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTA 119

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P  
Sbjct: 120 DWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKT 179

Query: 212 DLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V   E        +V++ 
Sbjct: 180 TLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISA 234

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLY 328
           +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI  +      D ++N L+
Sbjct: 235 LPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLF 294

Query: 329 RYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             T L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   R H+L
Sbjct: 295 ATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHIL 354

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL +A  N+DEV+ IIR    P+ A                                  
Sbjct: 355 EGLLVAFLNIDEVIEIIRNEDEPKPA-----------------------------LMSRF 385

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +
Sbjct: 386 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 445

Query: 508 VKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
                   RR+ + E      M + D +  E + + +S +G+V        R+ +     
Sbjct: 446 DAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDID 497

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G+  +  D         ++  V+F  S G  Y      LP    + +G+ L   L+L 
Sbjct: 498 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLP 555

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            G  +  ++         ++  ++ A+  G       +D +  NR+GK  + L     ++
Sbjct: 556 PGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVM 609

Query: 686 -SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             V      + +L  T+ G+ + FP+S +   +     G + I++
Sbjct: 610 PPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKIINI 652



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 489 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 546

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 547 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 602

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 603 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 656


>gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
 gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR]
          Length = 747

 Score =  532 bits (1371), Expect = e-149,   Method: Composition-based stats.
 Identities = 236/720 (32%), Positives = 378/720 (52%), Gaps = 63/720 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++   + +YL Y++ VI+ RA+P++ DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 10  PLSRFTEEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAKYKKSARTVG 69

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GK+HPHG++A Y+A+  MAQ ++ R  L++GQGN+GS D DP   AA RYTE RL K
Sbjct: 70  DVLGKFHPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPD-DPKSFAAMRYTEARLSK 128

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL +LG+ TVD+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+IP HN  E
Sbjct: 129 FSEVLLSELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATDIPPHNARE 188

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           V + C  +++ P   L+ +ME+++GPD+PT   +I     I   Y TGRGSI +R    +
Sbjct: 189 VANACAMLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSIKMRACYSV 248

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELK 315
           E        IV+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +   R+V+  +
Sbjct: 249 EDGE-----IVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENPTRLVVVPR 303

Query: 316 RGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
                 + ++N L+  T L+  + VN+  L    +P+   L+GILK ++ FR+  V RR 
Sbjct: 304 SNRVDTEQLMNHLFATTDLEKQYRVNLNILGLDGRPKVKPLVGILKEWLEFRQTTVTRRL 363

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++ L+K   R H+L GL IA  N+DEV+ IIR    P   + ELM R             
Sbjct: 364 QHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKP---KEELMSR------------- 407

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L++ Q  AILEL+L  L  L    +  E + L  E ++   +L S
Sbjct: 408 -------------FALTDKQAEAILELKLRHLAKLEEMKLTGEQDELNKEREKLETLLGS 454

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRV 551
             RL  +IK+ELL+  +     RR+ IVE        + D    E + V +S  G+V   
Sbjct: 455 DRRLKTLIKKELLADAENYGDERRSPIVERSEAKALSERDLTPAEAVTVVLSKKGWV--- 511

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +        +  +  D         ++  V+F  S G  +  +   LP    
Sbjct: 512 -----RTAKGHDIEGDKLSYKSGDSYLASAEGKSNQPVVFLDSSGKSFSCEAHLLPSA-- 564

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +++G+ L    SL  GE             + +  +++ A+  G     + SD +  N++
Sbjct: 565 RSQGEPLTGRFSLVAGE------NVEHVLMAKDESHLLLASDAGYGFVCQFSDLVSRNKN 618

Query: 672 GKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           GK  + L +  +IL          + +++ +  G+ + FP++ +   +     G + IS+
Sbjct: 619 GKAIITLPTGAKILPPNNVNDLQHDKVIVISNEGRMLVFPVADLPQLS--KGKGNKLISI 676



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 14/172 (8%)

Query: 719 RNSVG--VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           R + G  + G  L+       +A            +       +    +           
Sbjct: 512 RTAKGHDIEGDKLSYKSGDSYLASAEGKSNQPVVFLDSSGKSFSCEAHLLPSARSQGEPL 571

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT----DV 832
                           +   E  +L  S+ G+G      D    N++GK I        +
Sbjct: 572 TGRFSLVAGENVEHVLMAKDESHLLLASDAGYGFVCQFSDLVSRNKNGKAIITLPTGAKI 631

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
              N +  L        +D++I++S++G ++  PV ++   S+  KG  + S
Sbjct: 632 LPPNNVNDL-------QHDKVIVISNEGRMLVFPVADLPQLSK-GKGNKLIS 675


>gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
 gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2]
          Length = 784

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/778 (31%), Positives = 371/778 (47%), Gaps = 85/778 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M     + + +  +     S+    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MDLFTPAVEADIPEPADQDSLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSM 60

Query: 61  MQMGVEWNKK-------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ +           VKCAR+ G+V+G++HPHG+ A YDAL RMAQD+S R  LI+G
Sbjct: 61  ARMGLAFGGPNGATGARPVKCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL +    L+D++ + TVDF PNYDGS +EP  L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA+I  P +  + L  +I GPD+P G  I+ 
Sbjct: 181 TLLNGASGIAVGLATEIPSHNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIIS 240

Query: 234 R-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
               I  AY TGRGS+ +R    IE+ +  + Q+VV E+P  V+   +LE+I E+   K 
Sbjct: 241 SGAEIAAAYRTGRGSLKVRARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKI 300

Query: 293 IVDIADL-------------------RDESDRQGYRVVIELKRGASAD-VILNQLYRYTS 332
            +    L                    + S     R+V E K   +A   ++N L  +TS
Sbjct: 301 KLGKKALSLDQVQLKQSMLAVLDVVRDESSKDAAVRLVFEPKTSRTAQAELINTLLSHTS 360

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S   +NM  +    +P + +L  +L  ++AFR+  + +R+++ L+K   R H+L G  
Sbjct: 361 LESSSPINMTMIGLDGRPTQKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQ 420

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+DEV+ IIR S  P++A                                   LS+
Sbjct: 421 TVLLNIDEVIAIIRQSDEPKSA-----------------------------LIARFSLSD 451

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL +L  E     DIL + + L  ++ +E+ +   +
Sbjct: 452 RQAEDILEIRLRQLARLEAIKIEQELKTLREEQGRLEDILGNPTALRRLMIKEIEADAKQ 511

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
              PRRT I      +  E  ++ E + V VS  G+V        RA+   G   S    
Sbjct: 512 FADPRRTLIQAEKKSV-LEVKVLDEPVTVVVSSKGWV--------RARGGHGHAPSSFAF 562

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T  ++L F S G +Y   V  LP       G+ +  ++ L  G ++ 
Sbjct: 563 KAGDALYGTFECRTVDTLLAFGSNGRLYSVPVAMLPGARGD--GQPVTTLIDLESGTQLL 620

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
                        +  ++ ++  G      + + +  NRSGK  + L   + +      +
Sbjct: 621 HYFA------GPASAMLLLSSSGGYGFLATVENMVSRNRSGKAFITLAEGETLCRPSHVS 674

Query: 692 QEN---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
             +          +   +   + + F I  I+    +   G+  I L   D +   A 
Sbjct: 675 GASGSQPLPPATHVACASTGQRILTFDIGEIKQME-KGGRGLMLIDLEDKDTLAGAAA 731


>gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4]
          Length = 743

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/750 (31%), Positives = 376/750 (50%), Gaps = 69/750 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              I   S+ D  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+  + KY 
Sbjct: 2   NTDIEERSLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSASAKYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RY
Sbjct: 62  KSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPD-DPKSFAAMRY 120

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL ++G+ TV++ PN+DG+ +E  +L AR P+VL+NG  GIAVGMAT+I
Sbjct: 121 TEARLAPFAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMATDI 180

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNLGEVV  C+ +++ P   +  L + + GPD+PT   +I   T +   Y TG GS+ 
Sbjct: 181 PPHNLGEVVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHGSVR 240

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R    +EK       IV+  +PYQV+ A +LE+IA+ ++ K++  + DLRDESD +   
Sbjct: 241 MRACYTLEKGD-----IVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHENPT 295

Query: 310 VVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
            ++ + R    +V  +++ L+  T L+  + VN+  +    +P+   L  +L  ++ FR 
Sbjct: 296 RLVLVPRTRRVEVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLAEWLHFRI 355

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E++ RR ++ L K +DR  +L GL IA  N+DEV+ IIR    P+               
Sbjct: 356 EIIRRRLQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPK--------------- 400

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AILEL+L  L  L    IR E  +L  E K 
Sbjct: 401 --------------PVLMARFELSDRQAEAILELKLRHLMRLEETKIRAEDKALAAERKR 446

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSH 544
              IL S  ++ G++++EL++  ++    RR+ IVE       +++  +  E + V +S 
Sbjct: 447 LEKILGSERQIKGLLRKELVADVEKFGDARRSPIVERPSATALDEQALLPAEPITVVLSE 506

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        RA +      + +  R  D         ++   +F  S G  Y     
Sbjct: 507 KGWV--------RAAKSHEVDPTTLSYRTGDGYRASARGRSNQPAIFLDSTGRSYTLPAH 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    + +G+ L   L +  G     ++       +   ++ + A+  G     +   
Sbjct: 559 GLPSA--RGQGEPLSGHLQVVPGAEFVAVLL------AEPEIFYLMASDAGYGFLCQAKH 610

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               NR+GK  + L +    L            I + T  G+ + FP+  + +       
Sbjct: 611 LYAKNRAGKAVLNLSAGARALPPVPVADIEVEQIAIATNTGRLLLFPLGELPIMT--RGK 668

Query: 723 GVRGISL------AKGDQVISMAIVLHADA 746
           GV+ I +       + + V ++A+V    A
Sbjct: 669 GVKLIHIPSPRSAQRQEAVRALAVVPPGGA 698



 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   E F L  S+ G+G    +      NR+GK +              VA   V   +Q
Sbjct: 587 LAEPEIFYLMASDAGYGFLCQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEV---EQ 643

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK------DERVVSVERIRE 899
           I + ++ G L+  P+ E+ I +R  KGV +            E V ++  +  
Sbjct: 644 IAIATNTGRLLLFPLGELPIMTR-GKGVKLIHIPSPRSAQRQEAVRALAVVPP 695


>gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
 gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str.
           'morsitans']
          Length = 757

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/737 (32%), Positives = 378/737 (51%), Gaps = 62/737 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G   +++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  N 
Sbjct: 3   ELTHDGAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  +++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL + A  LL +LG+ TVD+ PN+DG+  EP +L AR PNVL+NG  GIAVGMA
Sbjct: 122 MRYTESRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ EV    +A++ NP   L+ L+E ++GPDFPT   +I  +  ++  Y TGRG
Sbjct: 182 TDIPPHNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R +  +E         V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 242 SVRMRALWTVEDGEA-----VISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +        ++N L+  T L+  + VNM  +    +P    L  IL  ++ 
Sbjct: 297 NPTRLVIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDGRPAVKNLHEILSEWLV 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R + V RR  + L K   R H+L GL +A  NLDEV+ IIR     +  ++ LMQR   
Sbjct: 357 YRRDTVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIR---TKDEPKQVLMQR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q  AILEL+L  L  L    +R E + L  E
Sbjct: 411 -----------------------FELSETQADAILELKLRHLAKLEEMKLRGEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
             +   IL+S  +L  ++K+E+ +        RR+ ++E        + + +  E + V 
Sbjct: 448 RDKIQAILASERKLSNLLKKEIEADDAAYGDARRSPLIERGEAKALSENELMPSEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R+ +      SG+  R  D         ++  V+F  S G  Y  
Sbjct: 508 LSTMGWV--------RSAKGHDIDPSGLGYRSGDNYLSSVRGKSNQPVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +   LP    + +G+ L   L+L  G          +  +  +   ++ A+  G      
Sbjct: 560 EPACLPSA--RGQGEPLTGKLTLPPGA------AVEQMLTGADERKLLMASDAGYGFVCS 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRN 720
            SD +  NR+GK  + L    +++         + +L  T+ G+ + FP+  +   +   
Sbjct: 612 FSDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLALTEAGRLLMFPVDDLPQLS--K 669

Query: 721 SVGVRGISLAKGDQVIS 737
             G + IS+   D    
Sbjct: 670 GKGNKIISIPSADAAAG 686



 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 5/161 (3%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           ++ V          I       A                         +          E
Sbjct: 536 LSSVRGKSNQPVVFIDSTGRSYALEPACLPSARGQGEPLTGKLTLPPGAAVEQMLTGADE 595

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + +L  S+ G+G   S  D    NR+GK +     +          ++     D+++ ++
Sbjct: 596 RKLLMASDAGYGFVCSFSDLVARNRAGKALLTLPENAKVMP----PLWLNGAADKLLALT 651

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           + G L+  PV+++   S+  KG  I S    +     +R+ 
Sbjct: 652 EAGRLLMFPVDDLPQLSK-GKGNKIISIPSADAAAGKDRLA 691


>gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 754

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/749 (32%), Positives = 387/749 (51%), Gaps = 70/749 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +  S      G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDILADSL----DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVD 295
              Y TGRGS+ +R V H+E        I+VT +P+QV+ A +LE+IA +++ K  +   
Sbjct: 236 LKIYETGRGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQ 290

Query: 296 IADLRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           +ADLRDESD +     V+I +      D ++  L+  T L+S + VN+  +    KP+  
Sbjct: 291 VADLRDESDHENPCRIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR + V RR ++ L+K   R H+L GL IA  NLDEV+ IIR   +P  
Sbjct: 351 NLRALLVEWLEFRVKTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHP-- 408

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            +  L+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 409 -KASLIAR--------------------------FALSEIQADYILDTRLRQLARLEEMK 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R E + L  E  +   +L S ++L  +++ ELL   +     RR+ IVE        + 
Sbjct: 442 LRAEQDELLKEQAKLQALLGSEAKLKKLVRTELLKDAETYGDDRRSPIVERAEAKALSEH 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D +  E + V +S  G+V        R+ +      +G+  +  D    L    ++   +
Sbjct: 502 DLLPNEKVTVVLSEKGWV--------RSAKGHDIDATGLSYKAGDGFKALAAGRSNQFAV 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP    + +G+ L   L+   G     ++         ++   V 
Sbjct: 554 FVDSTGRSYSVPAHTLPSA--RGQGEPLTGRLTPPPGATFECVL------MPDDDGLYVI 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  ++++       + N +   T  G+ + F
Sbjct: 606 ASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRESNWLASVTTEGRLLVF 665

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            IS +         G + I ++ G++V S
Sbjct: 666 KISDLPQLG--KGKGNKIIGIS-GERVAS 691



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 22/194 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   ++A                 +      L S   +    
Sbjct: 520 RSAKGHDIDATGLSYKAGDGFKALAAGRSNQFAVFVDSTGRSYSVPAHTLPSARGQGEPL 579

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E  C  +   +   +  S+ G+G      D +  N++GK + +   + 
Sbjct: 580 TGRLTPPPGATFE--CVLMPDDDGLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNA 637

Query: 835 INEIGALVAVFPV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
                 ++A  PV   +++ +  V+ +G L+   ++++    +  KG  I   +  ERV 
Sbjct: 638 -----KVIAPRPVADRESNWLASVTTEGRLLVFKISDLPQLGK-GKGNKIIGIS-GERVA 690

Query: 893 S-------VERIRE 899
           S       +  + E
Sbjct: 691 SREEYVTDIAVLPE 704


>gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4]
 gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1]
          Length = 745

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 225/740 (30%), Positives = 379/740 (51%), Gaps = 55/740 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I + S++D  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K 
Sbjct: 4   QIDTRSVSDFTEYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKS 63

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE
Sbjct: 64  ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPD-DPKSFAAMRYTE 122

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             + + A  LL ++ + TVD++ N+DGS  EPV L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 123 ANMSRYADILLGEIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPP 182

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ ++ NP++    L++ +  PD P T  +I  +  +   Y TG+GS  +R
Sbjct: 183 HNLHEVVKVCIRLLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMR 242

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
              H +        +++  +PYQV+   ++E+IA+L+ +K++  + ++RDESD     R+
Sbjct: 243 ATYHTDPKQN--HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRI 300

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEV 368
           VIELK+   + D I++ L+  T L++ + VNM  +    KPE   L  IL  +++ R+ V
Sbjct: 301 VIELKKSKLNIDKIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSV 360

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V+RR +Y L+K  +R H+L GL IA  N+DE++ IIR + +P+                 
Sbjct: 361 VIRRLQYRLDKINERLHILAGLLIAYLNIDEIIDIIRTAEDPK----------------- 403

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       I       L++ Q  AIL+++L +L  L   ++  E + L  E     
Sbjct: 404 ------------IELMTRFGLTQTQANAILDIKLRQLAKLEEIELTAEHDRLEAERLLIS 451

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLG 546
           + L++   L  ++  EL +        RR+ +V+       +  D I  E +   +S  G
Sbjct: 452 EQLNNPEMLTKLLIDELTADAKTHGDARRSPVVQRAESSSLKAVDLIASEPITAILSQAG 511

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA +      + +  R  D      +  +   ++   + G  Y      L
Sbjct: 512 WI--------RAAKGHHADPAEMNYRTGDAYLTHALGKSTERLILVDNTGRSYGLDSIHL 563

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G  + ++L+L  G +I  ++       +  +  V+ A+  G    N+L++  
Sbjct: 564 PSA--RTQGDPITSLLNLPAGAKIDQLL---FYNQTNGSPNVLMASSLGYGFINQLANLD 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +SGK ++ L     +  V     ++ + ++   G  + F    +   A     G + 
Sbjct: 619 TAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDELPKLA--KGKGNKL 676

Query: 727 ISLAKGDQVISMAIVLHADA 746
            +L  G+ + ++  +   DA
Sbjct: 677 ANLKAGETITAITALSDTDA 696


>gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 751

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/733 (32%), Positives = 382/733 (52%), Gaps = 62/733 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++++    +GI  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MTTESINYEGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+VD DP 
Sbjct: 61  NATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVD-DPK 119

Query: 126 --AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIA
Sbjct: 120 SFAAMRYTESRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIA 179

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYA 242
           VGMAT+IP HN+ E+ D  V ++DNP   LD L+ +++GPDFPT   +I  +  I+  Y 
Sbjct: 180 VGMATDIPPHNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQ 239

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            GRGSI +R     E        IV++ +P+Q + + ++ +IAE +  K++  + D+RDE
Sbjct: 240 LGRGSIKMRATWKKEDGE-----IVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDE 294

Query: 303 SDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILK 359
           +D +   R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL 
Sbjct: 295 ADHENPVRIVLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILT 354

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
            +++FR   V RR +Y LNK   R H+L GL IA  N+DEV+ IIR+   P   + ELM 
Sbjct: 355 EWLSFRRTTVTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEP---KAELMA 411

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           R                            LS+ Q  AIL LRL  L  L   +++ E   
Sbjct: 412 R--------------------------FNLSDEQAEAILNLRLRHLAKLEEHELQAEQAE 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVRED 537
           L  E     +IL S  RL  ++K+E+        +PRR+ +VE      + + + +  E 
Sbjct: 446 LEKERSSLEEILGSERRLNTLLKKEIQQDAKIYASPRRSPLVERAEAKAIAENEMLPTEP 505

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S +G+V        R  +       G+  +  D         ++ + +F  S G 
Sbjct: 506 VTVILSEMGWV--------RCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGR 557

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y      LP    +++G+ L   L+L  G  I  ++          +  ++ A+  G  
Sbjct: 558 SYALDPLTLPSA--RSQGEPLTGKLTLPAGATIDQLL------IENEDQPLLMASDAGYG 609

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVF 716
              K +D I  N++GK  + L    ++L   T      +L+  T  G+ + FP   +   
Sbjct: 610 FICKFADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFPAQDLPEL 669

Query: 717 AGRNSVGVRGISL 729
           +     G + +++
Sbjct: 670 S--KGKGNKIVTI 680


>gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 759

 Score =  532 bits (1370), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/758 (31%), Positives = 379/758 (50%), Gaps = 75/758 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E +        +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLIHDGSERQA-------LHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP  L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    V +ID P + LD ++E ++GPD+PT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVRELAKALVELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R +   E        +V++ +P+Q + A +LE+IA  +R K++  + 
Sbjct: 233 RKIYRTGRGSVRMRAIWKKEDGE-----VVISALPHQTSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  + +NM  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDMDQVMAHLFATTDLEKSYRINMNMIGLDNRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++A+R + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P   +
Sbjct: 348 LEILTEWLAYRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L++R                            +SE Q  AILEL+L  L  L    IR
Sbjct: 405 PKLIER--------------------------FGISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E      +L+S  +L  +IK+E+ +        RR+ + E      M + D 
Sbjct: 439 GEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAYGDDRRSPLQEREEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + + +S  G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 IPSEPVTIVLSEGGWV--------RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + ++  ++ A+
Sbjct: 551 DSTGRSYALDPTTLPSARGQGE--------PLTGKLTPPPGATIEQVLMAADDQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK  + L    + L        +D +L  T+ G+ + FP++
Sbjct: 603 DAGYGFVCTFNDLVARNRAGKAMITLPENAKALPPIEINGADDMLLAITQAGRMLMFPVN 662

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      +  D++  + ++  
Sbjct: 663 DLPQLS--KGKGNKIVSIPSAQAASGEDKLAWLFVLPP 698



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 17/192 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPTGLSYKAGDSFRAAARGKSNQPVVFIDSTGRSYALDPTTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 575 TGKLTPPPGATIEQVL--MAADDQKLLMASDAGYGFVCTFNDLVARNRAGK---AMITLP 629

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
            N   AL  +     +D ++ ++  G ++  PVN++   S+  KG  I S       + +
Sbjct: 630 ENAK-ALPPIEINGADDMLLAITQAGRMLMFPVNDLPQLSK-GKGNKIVSIPSAQAASGE 687

Query: 889 ERVVSVERIRES 900
           +++  +  +   
Sbjct: 688 DKLAWLFVLPPQ 699


>gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
 gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens
           WH6]
          Length = 754

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 243/749 (32%), Positives = 390/749 (52%), Gaps = 70/749 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +  S      G+   S+ D  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDILADSL----DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP+VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK--RIVD 295
              Y TG+GS+ +R V H+E        I+VT +P+QV+ A +LE+IA L++ K  ++  
Sbjct: 236 LKMYETGKGSVRMRAVYHVEDGD-----IIVTALPHQVSGAKVLEQIAALMQAKPSKLPQ 290

Query: 296 IADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           +ADLRDESD +   R+VI         +V++  L+  T L+S + VN+  +    KP+  
Sbjct: 291 VADLRDESDHENPCRIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDGKPQLK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++AFR + V RR ++ L+K   R H+L GL IA  NLDEV+ IIR + +P  
Sbjct: 351 NLRNLLVEWLAFRVQTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHP-- 408

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + EL+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 409 -KAELIAR--------------------------FELSEIQADYILDTRLRQLARLEEMK 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R+E ++L  E  +   +L S ++L  +++ EL+   +     RR+ IV+        + 
Sbjct: 442 LRDEQDALLKEQAKLQALLGSEAKLKKLVRSELIKDAETYGDDRRSPIVQRAEAKALTET 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E + V +S  G+V        R+ +      +G+  +  D         ++   +
Sbjct: 502 ELLPNEKITVVLSEKGWV--------RSAKGHDIDATGLSYKAGDGFKTAAAGRSNQFAV 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP    + +G+ L   L+   G     ++         ++   V 
Sbjct: 554 FIDSTGRSYSVPAHTLPSA--RGQGEPLTGRLTPPPGANFECVLL------PDDDSLYVI 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++          N +   T  G+ + F
Sbjct: 606 ASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTTEGRLLVF 665

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            IS +         G + I +  G++V S
Sbjct: 666 KISDLPQLG--KGKGNKIIGI-PGERVAS 691



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 24/195 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD            ++           S      +  +     
Sbjct: 520 RSAKGHDIDATGLSYKAGD---GFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQG 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                 +           L   +  +  + S+ G+G      D +  N++GK + +   +
Sbjct: 577 EPLTGRLTPPPGANFECVLLPDDDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNN 636

Query: 834 KINEIGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
                  ++   PV+D +   +  V+ +G L+   ++++    +  KG  I      ERV
Sbjct: 637 A-----KVILPRPVDDRESNWLASVTTEGRLLVFKISDLPQLGK-GKGNKIIGI-PGERV 689

Query: 892 VS-------VERIRE 899
            S       +  I E
Sbjct: 690 ASREEYVTDIAVIPE 704


>gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
 gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655]
          Length = 747

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 377/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R +   E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SIKMRAIWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISENDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
          Length = 736

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/734 (32%), Positives = 380/734 (51%), Gaps = 68/734 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K AR  
Sbjct: 1   MPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYTE +L 
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLS 119

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMAT+IP HN+ 
Sbjct: 120 KMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNIN 179

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSH 255
           E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+GSI +R V  
Sbjct: 180 ELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAVWK 239

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIEL 314
            E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +   R+V+  
Sbjct: 240 KEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVP 294

Query: 315 KRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           +      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ FR   V RR
Sbjct: 295 RSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTTVTRR 354

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA                   
Sbjct: 355 LNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA------------------- 395

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE Q  AIL LRL  L  L   +++ E + L  E  E    L 
Sbjct: 396 ----------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLG 445

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           S  RL  +IK+E+ +      +PR + +VE      + + D    ED+ V +S  G+V  
Sbjct: 446 SERRLNTLIKKEIQADAKAFASPRHSPLVERAEAKAISESDLTPTEDVTVILSEKGWV-- 503

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  +       G+  R  D         ++  V+F  S G  Y      LP   
Sbjct: 504 ------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSA- 556

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +++G+ L   ++L  G  +  ++       + ++  V+ A+  G        D +  N+
Sbjct: 557 -RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFICSFEDLVSRNK 609

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +     G + I+
Sbjct: 610 AGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS--KGKGNKIIN 667

Query: 729 L-----AKGDQVIS 737
           +      +G+++++
Sbjct: 668 ISAQAAKEGNELLA 681



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 504 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 563

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  +G   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 564 TGKITLPDGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 621

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 622 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 669


>gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
 gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202]
          Length = 747

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/734 (32%), Positives = 381/734 (51%), Gaps = 61/734 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S++    +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSNEIINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               KY K AR  G+V+GK+HPHG++A Y A+  MAQD++ R  LI+GQGN+GS++ D  
Sbjct: 61  NATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DDA 119

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  LL +L + TVDF+PN+DGS  EPV   +R P++L+NG  GIAVG
Sbjct: 120 AAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVG 179

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ +  V +++NP   L  L+ +++GPD+PT   +I  ++ I   Y  G
Sbjct: 180 MATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQG 239

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E        IV+  +P+Q + + ++ +IA+ +R K++  + D+RDESD
Sbjct: 240 RGSIRMRAVWSKEDGE-----IVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESD 294

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D +++ L+  T L+  + VNM  +    KP    L  IL  +
Sbjct: 295 HENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHEILTEW 354

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR   V RR    L+K  +R H+L GL IA  N+DEV+ IIR    P   +  LM R 
Sbjct: 355 LSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEP---KAVLMAR- 410

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS++Q  AIL LRL  L  L   +++ E N L 
Sbjct: 411 -------------------------FNLSDIQAEAILNLRLRHLAKLEEHELQAEKNQLE 445

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E  E   IL S  RL  +IK+E+ +       PRR+ +VE      + + D    ED+ 
Sbjct: 446 SERDELRLILGSERRLNTLIKKEIQADAKTFADPRRSPLVERAEAKAISESDLTPTEDVT 505

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y
Sbjct: 506 VILSEKGWV--------RCAKGHDIDVEGLSYRAGDGYLAHTRGRSNQPVVFLDSTGRTY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L +G  +  ++       +     V+ A+  G    
Sbjct: 558 ALDPTSLPSA--RSQGEPLTGKITLPEGATVEQVL------MAAPETKVLMASDSGYGFI 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L+ +    E DI L   +  G+ + FP++ + + +
Sbjct: 610 CTFEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDISLVAMSSAGRMLVFPLAELPILS 669

Query: 718 GRNSVGVRGISLAK 731
                G + I+++ 
Sbjct: 670 --KGKGNKIINISA 681



 Score = 45.6 bits (106), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 68/177 (38%), Gaps = 20/177 (11%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD       + H     ++ + ++        L         S
Sbjct: 515 RCAKGHDIDVEGLSYRAGD-----GYLAHTRGRSNQPVVFLDSTGRTYALDPTSLPSARS 569

Query: 775 LKNDSSVEGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                + +  + E    E   +   E  +L  S+ G+G   +  D    N++GK + +  
Sbjct: 570 QGEPLTGKITLPEGATVEQVLMAAPETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLT 629

Query: 832 VSKINEIGALVAVFPVNDNDQIILV--SDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                E   ++A   +++ + I LV  S  G ++  P+ E+ I S+  KG  I + +
Sbjct: 630 -----ENAKVLAPQLIDNEEDISLVAMSSAGRMLVFPLAELPILSK-GKGNKIINIS 680


>gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
 gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400]
          Length = 767

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/737 (32%), Positives = 379/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+ PN+DG+ +EPV L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V  C+ +IDNP  DL  LME + GPD+PT   +I  R  I
Sbjct: 176 ITGIAVGMATDIPPHNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GSI  R V   E+       IV+T +P+Q +   +LE+IA  ++ K++  ++
Sbjct: 236 ERIYDTGKGSIRARAVYSEEQGE-----IVITSLPHQASSGKILEQIANQMQAKKLPMVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  F VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPVRLVIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDGRPKVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR +Y L+K   R H+L  L +A  N+DEV+ IIR++  P   +
Sbjct: 351 KQLLTEWLEFRLTTVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  +ILEL+L  L  L    I+
Sbjct: 408 AELMAR--------------------------FNLSDKQAESILELKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +LSS  RL  ++K+EL+   +     RR+ I+E +      +++ 
Sbjct: 442 GEQDELAAERDKLELLLSSERRLKTLVKKELIQDGETYGDNRRSPIIERVDAKALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +       G+  +  D      +  ++ + +F 
Sbjct: 502 TPTESVTVVLSDKGWV--------RCAKGHDVDVEGLSYKSGDSYLCSVMGKSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  G  +  ++         +  + + AT
Sbjct: 554 DSTGRAFATDSHTLPSA--RSQGEPITTRFNMAPGATMQHVL------MGEDEQFFLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +    +  +   +  +  +L  T  G+ + F +
Sbjct: 606 DAGYGFICAYPDLVSRNKAGKALLSLPTNALAMQPKLINKTADQSLLAITSEGRMLMFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 DALPQLS--KGKGNKII 680



 Score = 38.6 bits (88), Expect = 4.6,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD    +  V+         I       A              
Sbjct: 518 RCAKGHDVDVEGLSYKSGDS--YLCSVMGKSNQAAVFIDSTGRAFATDSHTLPSARSQGE 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +  +   +   EQF L  ++ G+G   +  D    N++GK + +   + 
Sbjct: 576 PITTRFNMAPGATMQHVLMGEDEQFFLLATDAGYGFICAYPDLVSRNKAGKALLSLPTNA 635

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           +     L+       +  ++ ++ +G ++   ++ +   S+  KG  I 
Sbjct: 636 LAMQPKLINKTA---DQSLLAITSEGRMLMFSLDALPQLSK-GKGNKII 680


>gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
 gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1]
          Length = 758

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/737 (31%), Positives = 372/737 (50%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGS+  R V  +E        I++T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYESGRGSLRARAVYTVESGE-----IIITALPHQASSGKILEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P+   
Sbjct: 351 KTLLTEWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                     +       L++ Q  AILEL+L  L  L    I 
Sbjct: 408 --------------------------VELMARFSLTDKQAEAILELKLRHLAKLEEFKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV+        +++ 
Sbjct: 442 AEQNELEAEREKLEQLLGSERRLKTLIKKELIQDAETYGDNRRSPIVQRHESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSEKGWV--------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++              + AT
Sbjct: 554 DSSGRAFATDSHTLPSA--RSQGEPITTRFNMAPGETMQHVI------MGEEEQCYLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L  +   +  +  +L  T  G+ + F +
Sbjct: 606 DAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREMSLLAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 764

 Score =  532 bits (1369), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/813 (30%), Positives = 388/813 (47%), Gaps = 72/813 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EPVVL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV   CV ++DNP+  LDALM  ++GPD+PT   +I  R  I
Sbjct: 176 VTGIAVGMATDIPPHNAREVAHACVELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GSI  R V + E        IV+T +P+Q + A ++E+IA  +  K++  + 
Sbjct: 236 RKIYETGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVT 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  +++FR E V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P    
Sbjct: 351 KTILTEWLSFRRETVRRRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEEEP---- 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    +R
Sbjct: 407 -------------------------GRVMMERFNISEAQAEAILELKLRHLAKLEEFKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E  +   IL S  RL  ++K+E+L+  ++    RRT +VE    +   +++ 
Sbjct: 442 AEQNELAEERDKLELILGSERRLSTLLKKEILADAEKYGDDRRTPLVERATAVALTEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        RA +       G+  +  D         ++   +F 
Sbjct: 502 TPSEPVTVILSDKGWV--------RAAKGHDVDVEGLSYKAGDNYLAHAHGRSNQQAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+LG  Y  +   LP    +++G+ L    +L  GE                    +  +
Sbjct: 554 STLGRTYSLEAHTLPSA--RSQGEPLTGRFALGAGEE------VRHLVMGNEGEPYLICS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLT-TKLGQCVRFPI 710
             G     K  D I  N++GK  + +      +   +    + D+ +  +  G+ + FP+
Sbjct: 606 DAGYGFVCKYDDLIGKNKNGKALLTVPEGGLVMAPQKIGAPDTDLCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + + V       G + I      +   ++ + MA V+             K       L 
Sbjct: 666 NTLPVLG--KGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTLFAGKRKLTLKPADLD 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
               E              +     + +   E 
Sbjct: 724 YYRGERGRRGAKLPRGLQRVDRIEIETVAGAEP 756



 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 64/193 (33%), Gaps = 22/193 (11%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD  ++ A            +  +    +              
Sbjct: 518 RAAKGHDVDVEGLSYKAGDNYLAHA--HGRSNQQAVFLSTLGRTYSLEAHTLPSARSQGE 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E R   +  + +  L  S+ G+G      D    N++GK +       
Sbjct: 576 PLTGRFALGAGEEVRHLVMGNEGEPYLICSDAGYGFVCKYDDLIGKNKNGKALLTV---- 631

Query: 835 INEIGALVAVFP---VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------ 885
               G LV         D D  + +S++G ++  P+N + +  +  KG  + S       
Sbjct: 632 --PEGGLVMAPQKIGAPDTDLCMAISNEGRMLLFPLNTLPVLGK-GKGNKLISIPSARVK 688

Query: 886 AKDERVVSVERIR 898
           A++E VV    I 
Sbjct: 689 AREEFVVMAAVIP 701


>gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma
           proteobacterium eBACHOT4E07]
          Length = 748

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/800 (30%), Positives = 409/800 (51%), Gaps = 67/800 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +    S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY
Sbjct: 2   PKDQSNSISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSKY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA R
Sbjct: 62  KKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAMR 120

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L   A+ L+ +L   TVD++PN+DGS  EPV+  A+ P +L+NG  GIAVGMAT+
Sbjct: 121 YTESKLTNFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATD 180

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSI 248
           IP+HN+ EV+D  V +++ P  DL  L++II+GPDF    +++     ++  Y++GRG  
Sbjct: 181 IPSHNINEVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGF 240

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG- 307
            I+          D+ QI++  +PYQ + + +LE+IAE +  K++  + DL DE D +  
Sbjct: 241 KIQAQWMQ-----DKNQIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDP 295

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+VI LK    +A+ ++N LY  T LQ  + VNM  ++    P+ F+L+ +LK +V FR
Sbjct: 296 IRLVITLKSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWVIFR 355

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++ + R+ ++ L++  DR H+L GL     +LD+V++IIR S  P+              
Sbjct: 356 KDTLKRKLEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEPKK------------- 402

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q  AILE+RL +L  L +  I NE N L  E  
Sbjct: 403 ----------------ELIKAFKLSEIQANAILEIRLRQLAKLEQLKIENERNELVNERD 446

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVS 543
           +   IL S+SRL  +IK EL  +K+     R++ I+         +E+ IV E + V +S
Sbjct: 447 DIEKILKSKSRLKTLIKNELNEIKELFGEERKSPIINSTNAKIFSEEETIVTEPITVVLS 506

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+V        R+ +      + +  R +D + D     ++   +F  S G  Y  + 
Sbjct: 507 KAGWV--------RSAKGHEIDPNTLSYRGDDSLQDFARGRSNQLAIFLDSNGKAYSIQS 558

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +  G+ +   L+ + G +  + +   E      N +++  T  G    ++  
Sbjct: 559 HSLPSA--RGMGEPITGRLNADSGVQFISSVIGVE-----GNKFLIMNTA-GYGYISEYQ 610

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + I   ++G+  MKL    ++L        +  I   + +G+ + F I  + +       
Sbjct: 611 NMISNKKTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSNIGKLLIFNIEELPILG--KGK 668

Query: 723 GVRGISLAKGDQVIS----MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           G + I++ K D++ +    MA       D   +I   K     +     +     + +  
Sbjct: 669 GNKIINIPK-DKLAAGEEFMAHAQLLADDSSLKIEVGKRSVTLKPKDWSEYVLSRAKRGK 727

Query: 779 SSVEGNISEERCQELKLKEQ 798
              +    E   +E K  E+
Sbjct: 728 KVGKLINIERLIEEPKSLEE 747


>gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047]
 gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047]
          Length = 747

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRATVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678



 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               ++ ++  G ++  P  ++ + S+  KG  + 
Sbjct: 643 STALVVAITSAGRMLIFPAQDLPVLSK-GKGNKMI 676


>gi|12045056|ref|NP_072866.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|1352714|sp|P47446|PARC_MYCGE RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3844802|gb|AAC71422.1| DNA topoisomerase IV, A subunit [Mycoplasma genitalium G37]
 gi|166078896|gb|ABY79514.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 781

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 207/726 (28%), Positives = 354/726 (48%), Gaps = 39/726 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +++   +   +I +    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   DQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTT 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+++IYDA+ RM+Q W      +   GN GSVDGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S +EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E++D     ID P+ +L  +++I++GPDFPTG  +     + + Y  G+G  +
Sbjct: 182 IAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+      + + +  QI +T+IPY+  KA ++++I E++ + ++  I  + D SDR G R
Sbjct: 242 IQAKY---EVNKNLNQIEITQIPYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIR 298

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I+ K    A+ I+  L+++T LQ  F++N   +    P +  L+  L  F+ F  E++
Sbjct: 299 IIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELI 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + + KY L  A  R  +++GL  A++ +D+++++IR + +   AR +L+           
Sbjct: 359 INKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLI----------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT     ++  E N L   +     
Sbjct: 408 ---------------DNFKFTFNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQ 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           +++S      ++K++    K +    RR++I   +   + E+  + E+        G + 
Sbjct: 453 LIASEKARNKLLKKQFEGYKKQFHQQRRSQICGFINQKKVEESELIENKTY-----GVLI 507

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
               + ++ +       +     + D +     ++    +   +SLG +    V++L   
Sbjct: 508 TKAGNYHKFESNQLLKSTTDFKSESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKLAFN 567

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S       L +++S          + F    +S N   +V  +K G V+R  L+      
Sbjct: 568 SKN----KLASLVSKKPILLEYETIVFVGTMNSVNQPILVLTSKLGMVKRIDLTKLNIKP 623

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
               + + L  +D ++S      +  I L +       F  + I + +    +GV+G+ L
Sbjct: 624 LKATLCISLRDKDHLVSAFLQQDDKLICLVSDHNYYTVFHTNEIPLISS-KGMGVKGMKL 682

Query: 730 AKGDQV 735
              DQ+
Sbjct: 683 KLEDQI 688



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 74/241 (30%), Gaps = 18/241 (7%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               Q        +     +E    E    +   +L TK G   +F  + +     +++ 
Sbjct: 474 QFHQQRRSQICGFINQKKVEES---ELIENKTYGVLITKAGNYHKFESNQLL----KSTT 526

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
             +    ++ D +I    + + D  +              +L      ++ SL +   + 
Sbjct: 527 DFK----SESDTIIFAQTIANTDQIFIVTSLGNIINIPVYKLAFNSKNKLASLVSKKPIL 582

Query: 783 GNISEERCQ-ELKLKEQFILTVSEK-GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                      +    Q IL ++ K G  KR       I     K      +        
Sbjct: 583 LEYETIVFVGTMNSVNQPILVLTSKLGMVKRIDLTKLNIKPL--KATLCISLRDK---DH 637

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           LV+ F   D+  I LVSD         NEI + S    GV       ++++  V     +
Sbjct: 638 LVSAFLQQDDKLICLVSDHNYYTVFHTNEIPLISSKGMGVKGMKLKLEDQIKFVVAFEAN 697

Query: 901 E 901
           E
Sbjct: 698 E 698


>gi|47459295|ref|YP_016157.1| DNA topoisomerase IV subunit A [Mycoplasma mobile 163K]
 gi|47458625|gb|AAT27946.1| topoisomerase IV subunit A [Mycoplasma mobile 163K]
          Length = 858

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/720 (32%), Positives = 367/720 (50%), Gaps = 43/720 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E +      S+   M N Y  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+   K
Sbjct: 4   NELKDKFLLQSLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEK 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GKYHPHG+++IY+A+ RM+Q+W + + LI+  GN GS+D DP AA R
Sbjct: 64  PFKKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPAAAMR 123

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL D+  DTV F  N+D S +EP VL A +PN+LVNG  GIA G AT 
Sbjct: 124 YTEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATE 183

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP HNLGEV+DG +A I NP+I ++ L  II+GPDFPTG +I G  GIK A  +GRG I 
Sbjct: 184 IPPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAFSGRGRIT 243

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I     + K      QIV+TEIPY V K+ ++ +I E+  +K I  + ++RDE++R G +
Sbjct: 244 ITSKYEVHK-----NQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIK 298

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VI+L+ GA A  I+  L + T LQ  +S N +A++   P    L  +++AF+   + + 
Sbjct: 299 IVIDLEAGADASKIMKFLMQKTELQLYYSYNNIAIHNNAPVLMNLHDLIQAFLDHVKVIQ 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +  + L K   R  ++ G        D+V+ +IR S                   +++
Sbjct: 359 TNKINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSE------------GSKVGVVEN 406

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI +                SE+Q  +I  LRL RL+    ++   E   L   I     
Sbjct: 407 LIKI-------------FNFSEIQAESIANLRLYRLSKTDVEEFIKEKQELETRINFLKT 453

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGY 547
           +LSS S     + +    +K    TPR+T I +  L ++    D I  E+  V +S  GY
Sbjct: 454 LLSSESEFNAELIKIFKDIKKTYATPRKTEIKDQALKLDVSLSDLIQAEETFVGISRDGY 513

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +KR     +  +          +++++D +  L    T   +L F++ G      ++++ 
Sbjct: 514 IKR-----FNQKIHDSNEMQTYLLKEDDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIA 568

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
               +  G  L +  +L   E +  ++   +      +  +   TK G  ++ +L +F  
Sbjct: 569 EEKWKNLGIHLNDFATLLPNEFLIKVLYVDDFS---KDFSITLITKKGFGKKVQLPEFEV 625

Query: 668 INRSGKI-AMKL-DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              +    A+K     DE+L+        DILL     +  +F  +  +   G  + GV+
Sbjct: 626 SRENKSYPAIKFKKDGDELLNAFITNDRLDILLVNTKLEVYKFSENDFKT-YGIKAAGVK 684



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 18/231 (7%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP--ISAIR 714
           + ++    +    ++      L     +        E   +  ++ G   RF   I    
Sbjct: 468 IFKDIKKTYATPRKTEIKDQALKLDVSLSD--LIQAEETFVGISRDGYIKRFNQKIHDSN 525

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
                         L + D +I ++  L                    ++     + +  
Sbjct: 526 EMQTYL--------LKEDDALIFLSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGI 577

Query: 775 LKNDSS---VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
             ND +       + +    +   K+  I  +++KGFGK+    +F + +R  K   A  
Sbjct: 578 HLNDFATLLPNEFLIKVLYVDDFSKDFSITLITKKGFGKKVQLPEFEV-SRENKSYPAIK 636

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
             K  +   L+  F  ND   I+LV+ K  + +   N+ +       GV I
Sbjct: 637 FKK--DGDELLNAFITNDRLDILLVNTKLEVYKFSENDFKTYGIKAAGVKI 685


>gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 747

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 229/729 (31%), Positives = 393/729 (53%), Gaps = 62/729 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +    S+S+    ++SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++ + KY 
Sbjct: 3   KDKFDSISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSKYK 62

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA RY
Sbjct: 63  KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAMRY 121

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   A+ L+ +L   TVD++PN+DGS  EPV+  ++ P +L+NG  GIAVGMAT+I
Sbjct: 122 TESKLTSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATDI 181

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P+HN+ EV+D  V +++ P  +L+ L++II+GPDF     +I+    ++  Y++GRG   
Sbjct: 182 PSHNINEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGFK 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           I+     EK       I++  +PYQ + + +LE+IAE +  K++  + DL DE D +   
Sbjct: 242 IQAQWKQEK-----NSIIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDPV 296

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+VI LK    +A+ ++N L+  T LQ  + +NM  ++    P+ F L+ +LK ++AFR+
Sbjct: 297 RLVITLKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKGGPKVFPLVDLLKEWLAFRK 356

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V R+ ++ L++  DR H+L GL     ++DEV++IIR S  P+               
Sbjct: 357 DTVKRKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPKK-------------- 402

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q  AILE++L +L  L +  + +E N+L  E  E
Sbjct: 403 ---------------DLIKAFKLSEIQANAILEIKLRQLAKLEQIKLEDEKNNLDNEQNE 447

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
              +L S++RL  +IK+EL+ +K+     R++ I+E        +ED +V E + V +S 
Sbjct: 448 IEKVLKSKARLKTLIKKELIEIKEMFGEERKSPIIESSNAKVFSEEDTLVTEPITVVLSK 507

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R+ +        +  R +D + D     ++   +F  S G  Y     
Sbjct: 508 AGWI--------RSAKGHDIDPHSLSYRGDDNLQDFARGKSNQLAVFLDSNGKAYSIPSH 559

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    +  G+ +   L+ + G +  + +   +     N  Y++  T  G    ++  +
Sbjct: 560 SLPSA--RGMGEPITGRLNADSGVQFISSIIGED-----NGKYLIMNTA-GYGYISEFKN 611

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
                ++G+  MKL    ++L      +++  I   + +G+ + F +  + +       G
Sbjct: 612 MTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSNIGKLLIFKLEELPILG--KGKG 669

Query: 724 VRGISLAKG 732
            + I++ K 
Sbjct: 670 NKIINIPKD 678


>gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
 gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7]
          Length = 758

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/737 (32%), Positives = 376/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  S      G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAIKLSL----DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+  R V  +E        IV+T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYETGRGSLKARAVYSVEAGE-----IVITALPHQASSGKILEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KELLTEWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AILEL+L  L  L    I+
Sbjct: 408 AELMAR--------------------------FNLTDRQAEAILELKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +LSS  RL  +IK+EL+   +     RR+ IVE        +++ 
Sbjct: 442 AEQDELEAEREKLEQLLSSERRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSEKGWV--------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++         +    + AT
Sbjct: 554 DSSGRAFATDSHSLPSA--RSQGEPITTRFNMAPGETMQHVIL------GEDEQCFLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L    + L      +  +  IL  T  G+ + F +
Sbjct: 606 DAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREMSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336]
 gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336]
          Length = 747

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/723 (32%), Positives = 372/723 (51%), Gaps = 62/723 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K
Sbjct: 7   EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL +LG+ TV+++ N+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HNL EV D  + ++DNP+ DLD LM  ++GPDFPT   +I  +  I+  Y  GRGSI +
Sbjct: 186 PHNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E        I++T +P+Q + + ++ +IAE ++ K++  + D+RDE+D +   R
Sbjct: 246 RAVWKKENGE-----IIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIR 300

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI  +      D ++  L+  T L+  + VNM  +    KP    L+ IL  ++ FR +
Sbjct: 301 LVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLTFRRQ 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL IA  N+DE++ IIR    P   +  L+ R       
Sbjct: 361 TVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKP---KEILIAR------- 410

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AIL LRL  L  L   +++ E N+L  E    
Sbjct: 411 -------------------FNLTDEQAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
             IL+S  RL  +IK+E+        +PR + +VE      + + D    E + + +S +
Sbjct: 452 EQILNSEIRLNNLIKKEIQQDAKTFASPRLSPLVERAEAKAISETDMTPSEPITIILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R  +        +  +  D         ++  V+F  S G  Y      
Sbjct: 512 GWV--------RCAKGHDINARALSYKTGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +++G+ L   L+L  G  I  ++          N  ++ A+  G     K  D 
Sbjct: 564 LPSA--RSQGEPLTGKLTLPSGATIEHLL------IENENQSLLMASDAGYGFICKFEDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGV 724
           +  N++GK  + L     +L          +L+  T + + + FP++ +   +     G 
Sbjct: 616 VSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNRMLVFPVADLPELS--KGKGN 673

Query: 725 RGI 727
           + I
Sbjct: 674 KII 676


>gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
 gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32]
          Length = 758

 Score =  531 bits (1368), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/737 (31%), Positives = 377/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGS+  R V  +E        I++T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYESGRGSLRARAVYTVESGE-----IIITALPHQASSGKILEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KTLLTEWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AILEL+L  L  L    I 
Sbjct: 408 VELMAR--------------------------FSLTDKQAEAILELKLRHLAKLEEFKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV+        +++ 
Sbjct: 442 AEQNELEAEREKLEQLLGSERRLKTLIKKELIQDAETYGDNRRSPIVQRHESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSEKGWV--------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++              + AT
Sbjct: 554 DSSGRAFATDSHTLPSA--RSQGEPITTRFNMAPGETMQHVI------MGEEEQCYLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L+ +   +  +  +L  T  G+ + F +
Sbjct: 606 DAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
           +A+   +     G + I
Sbjct: 666 AALPQLS--KGKGNKII 680


>gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
 gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305]
          Length = 747

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/734 (32%), Positives = 381/734 (51%), Gaps = 61/734 (8%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +S++    +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+
Sbjct: 1   MSNEIINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGL 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
               KY K AR  G+V+GK+HPHG++A Y A+  MAQD++ R  LI+GQGN+GS++ D  
Sbjct: 61  NATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DDA 119

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL K A  LL +L + TVDF+PN+DGS  EPV   +R P++L+NG  GIAVG
Sbjct: 120 AAYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVG 179

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ +  V +++NP   L  L+ +++GPD+PT   +I  ++ I   Y  G
Sbjct: 180 MATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQG 239

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E        IV+  +P+Q + + ++ +IA+ +R K++  + D+RDESD
Sbjct: 240 RGSIRMRAVWSKEDGE-----IVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESD 294

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D +++ L+  T L+  + VNM  +    KP    L  IL  +
Sbjct: 295 HENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHDILTEW 354

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR   V RR    L+K  +R H+L GL IA  N+DEV+ IIR    P   +  LM R 
Sbjct: 355 LSFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEP---KAVLMAR- 410

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      LS++Q  AIL LRL  L  L   +++ E N L 
Sbjct: 411 -------------------------FNLSDIQAEAILNLRLRHLAKLEEHELQAEKNQLE 445

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMV 539
            E  E   IL S  RL  +IK+E+ +       PRR+ +VE      + + D    ED+ 
Sbjct: 446 SERDELRLILGSERRLNTLIKKEIQADAKTFADPRRSPLVERAEAKAISESDLTPTEDVT 505

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y
Sbjct: 506 VILSEKGWV--------RCAKGHDIDVEGLSYRAGDGYLAHARGRSNQPVVFLDSTGRAY 557

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
                 LP    +++G+ L   ++L +G  +  ++       +     V+ A+  G    
Sbjct: 558 ALDPTSLPSA--RSQGEPLTGKITLPEGAIVEQVL------MAAPETKVLMASDSGYGFI 609

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFA 717
               D +  N++GK  + L    ++L+ +    E D+ L   +  G+ + FPI+ + + +
Sbjct: 610 CTFDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVSLVAMSSAGRMLVFPIAELPILS 669

Query: 718 GRNSVGVRGISLAK 731
                G + I+++ 
Sbjct: 670 --KGKGNKIINISA 681



 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 69/177 (38%), Gaps = 20/177 (11%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD       + HA    ++ + ++        L         S
Sbjct: 515 RCAKGHDIDVEGLSYRAGD-----GYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARS 569

Query: 775 LKNDSSVEGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                + +  + E    E   +   E  +L  S+ G+G   +  D    N++GK + +  
Sbjct: 570 QGEPLTGKITLPEGAIVEQVLMAAPETKVLMASDSGYGFICTFDDLVSRNKAGKAVISLT 629

Query: 832 VSKINEIGALVAVFPVNDNDQIILV--SDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                E   ++A   +++ + + LV  S  G ++  P+ E+ I S+  KG  I + +
Sbjct: 630 -----ENAKVLAPQLIDNEEDVSLVAMSSAGRMLVFPIAELPILSK-GKGNKIINIS 680


>gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
 gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT]
          Length = 748

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/727 (32%), Positives = 373/727 (51%), Gaps = 62/727 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ TV+++ N+DG+ +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL EV +  + ++DNP+ DLD LM  ++GPDFPT   +I  +  I+  Y  GRG
Sbjct: 183 TDIPPHNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        I++T +P+Q + + ++ +IAE ++ K++  + D+RDE+D +
Sbjct: 243 SIKMRAVWKKENGE-----IIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      D ++  L+  T L+  + VNM  +    KP    L+ IL  ++ 
Sbjct: 298 NPIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLT 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR + V RR +Y L+K   R H+L GL IA  N+DE++ IIR    P   +  L+ R   
Sbjct: 358 FRRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKP---KEILIAR--- 411

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++ Q  AIL LRL  L  L   +++ E N+L  E
Sbjct: 412 -----------------------FNLTDEQAEAILNLRLRHLAKLEEQELQAEKNNLAKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL+S  RL  +IK+E+        +PR + +VE      + + D    E + + 
Sbjct: 449 RNSLEQILNSEIRLNNLIKKEIQQDAKTFASPRLSPLVERAEAKAISETDMTPSEPITII 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++  V+F  S G  Y  
Sbjct: 509 LSEMGWV--------RCAKGHDINARALSYKTGDNYLTHACGKSNQPVVFIDSTGRSYTL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++          N  ++ A+  G     K
Sbjct: 561 DPLSLPSA--RSQGEPLTGKLTLPSGATIEHLL------IENENQSLLMASDAGYGFICK 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPISAIRVFAGRN 720
             D +  N++GK  + L     +L          +L+  T + + + FP++ +   +   
Sbjct: 613 FEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNRMLVFPVADLPELS--K 670

Query: 721 SVGVRGI 727
             G + I
Sbjct: 671 GKGNKII 677


>gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 750

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 230/725 (31%), Positives = 366/725 (50%), Gaps = 62/725 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI    + +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HN+ E+ +  V +IDNP   LD L+ +++GPD+PT   +I  +  I+  Y  GRGS+ +
Sbjct: 186 PHNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V   E        I++T +P+Q + + ++ +IAE +  K++  + D+RDE+D +   R
Sbjct: 246 RAVWKKEDGE-----IIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHENPIR 300

Query: 310 VV-IELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +V I        D ++  L+  T L+  + VNM  +    +P    L+ IL  ++ FR  
Sbjct: 301 IVLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDNRPAVKNLVQILTEWLQFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y LNK  DR H+L GL IA  N+DEV+ +IR    P+ A              
Sbjct: 361 TVTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAA-------------- 406

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE Q  AIL LRL  L  L  ++++ E + L  E    
Sbjct: 407 ---------------LIDRFGLSETQAEAILNLRLRHLAKLEENELQAEKDRLEEERDSL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
             IL S  RL  +IK+E+        +PR + +V+      + + D    E + V +S +
Sbjct: 452 QLILGSERRLNTLIKKEIQQDAQTYASPRLSPLVQRAEAKAISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R  +        +  +  D         ++ + +F  S G  Y      
Sbjct: 512 GWV--------RCAKGHDIDVQNLSYKAGDKYLSHAYGKSNQAAVFIDSTGRSYALDPLS 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +++G+ L   LSL  G                +   ++ A+  G     +  D 
Sbjct: 564 LPSA--RSQGEPLTGKLSLPAGA------SVEHVLMEQDKQALLMASDAGYGFICQFDDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           I  N++GK  + L    ++L+      +   ++  T  G+ + FP+  +   A     G 
Sbjct: 616 IARNKAGKALISLPENAKVLTPLRIDNENARLVALTSAGRMLIFPVKDLPSLA--KGKGN 673

Query: 725 RGISL 729
           + +++
Sbjct: 674 KIVTI 678


>gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
 gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH]
          Length = 747

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 377/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R +   E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRAIWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILESERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678



 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               ++ ++  G ++  P  ++ + S+  KG  + 
Sbjct: 643 STALVVAITSAGRMLIFPAQDLPVLSK-GKGNKMI 676


>gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20]
 gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
 gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20]
 gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW]
          Length = 747

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +   PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678



 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               ++ ++  G ++  P  ++ + S+  KG  + 
Sbjct: 643 STALVVAITSAGRMLIFPAQDLPVLSK-GKGNKMI 676


>gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
 gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2080]
          Length = 752

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/738 (31%), Positives = 377/738 (51%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ ++ +   E      +S+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M
Sbjct: 1   MSDPVMGATSPET-----LSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQD+S R  LI+GQGN+GS 
Sbjct: 56  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSP 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL +LG+ TVD++PN+DG+  EP+VL AR PN+L+NG
Sbjct: 116 D-DPKSFAAMRYTESRLTRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV   + +++ P   L+ L +II+GPDFPT   +I  R+ I
Sbjct: 175 TTGIAVGMATDIPPHNLREVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEI 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R    +E        +VV  +P+QV+ + +LE+IA  ++ +++  +A
Sbjct: 235 SAMYKTGRGSLKMRAAWRVEDG-----AVVVHALPHQVSGSKVLEQIAAQMQARKLPMVA 289

Query: 298 DLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD     R V+  +      D +++ L+  T L+  + VN+  +    +P   +L
Sbjct: 290 DLRDESDHEHPTRFVVVPRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDGRPGVKSL 349

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L K   R H+L G  +A  N+DEV+RI+R    P  A 
Sbjct: 350 ATILLEWLEFRRTTVRRRLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPA- 408

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E+Q  AIL+L+L  L  L    IR
Sbjct: 409 ----------------------------LMARFQLTELQADAILDLKLRNLAKLEEMKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E N L  E  +    L S +RL  +IK+EL SV ++    RR+ IVE        + + 
Sbjct: 441 GEQNELAEERDDLQKTLGSDARLKTLIKKELESVANDHGDDRRSPIVEREEAKAFSELEL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              + + + +S  G++        RA +        +  +  D         ++   + F
Sbjct: 501 TTADPLTIVLSEKGWI--------RAAKGHDIDPEALSYKSGDGFKLAAKGRSNQPTVVF 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y     +LP    + +G+ L   ++   G     ++   +      + Y++  +
Sbjct: 553 DSTGRSYSLPSHQLPSA--RGQGEPLTGRINPPSGATFEALLTGVD-----ADRYLLA-S 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS---VETCTQENDILLTTKLGQCVRFP 709
             G     + +D    N++GK  + L     +L    V +  +   +   T  G+ + FP
Sbjct: 605 DAGYGFVGRFADLQTKNKAGKAVLSLPKGAGVLQPGSVGSADETAMVAAVTNEGRLLVFP 664

Query: 710 ISAIRVFAGRNSVGVRGI 727
           ++ +   +     G + I
Sbjct: 665 LTDLPELS--RGKGNKII 680


>gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200]
          Length = 758

 Score =  531 bits (1367), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/737 (31%), Positives = 377/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGS+  R V  +E        I++T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYESGRGSLRARAVYTVESGE-----IIITALPHQASSGKILEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KTLLTEWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AILEL+L  L  L    I 
Sbjct: 408 VELMAR--------------------------FSLTDKQAEAILELKLRHLAKLEEFKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV+        +++ 
Sbjct: 442 AEQNELEAEREKLEQLLGSERRLKTLIKKELIQDGETYGDNRRSPIVQRHESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSEKGWV--------RCAKGHDIDPLSLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++              + AT
Sbjct: 554 DSSGRAFATDSHTLPSA--RSQGEPITTRFNMAPGETMQHVL------MGEEEQCYLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L+ +   +  +  +L  T  G+ + F +
Sbjct: 606 DAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
           +A+   +     G + I
Sbjct: 666 AALPQLS--KGKGNKII 680


>gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846]
          Length = 747

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 376/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPISLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1]
 gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1]
          Length = 795

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/790 (31%), Positives = 377/790 (47%), Gaps = 98/790 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++       ++  G  ++ +    Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ M
Sbjct: 1   MSDQTSLDLAQQAAG-DALDLGQYAQRAYLEYALSVVKGRALPDVTDGLKPVQRRILYAM 59

Query: 61  MQMGVEWNKK-------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ ++          VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  L++G
Sbjct: 60  DRMGLSYSGPNHNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFNQRYPLVDG 119

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL K    LLD++   TVDF PNYDGS QEP  L AR P 
Sbjct: 120 QGNFGSRDGDGAAAMRYTEARLSKITGLLLDEIDMGTVDFVPNYDGSTQEPQQLPARLPF 179

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            L+NG  GIAVG+AT IP+HNL EV D CVA+I  P +  + L +II GPD+P G  I+ 
Sbjct: 180 ALLNGASGIAVGLATEIPSHNLREVADACVALIKRPQLSDEELFQIIPGPDYPGGGQIIS 239

Query: 234 R-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             + I++AY TGRGS+ +R    IE+ +  + Q+VVTE+P  V+   +LE+I ++   K 
Sbjct: 240 SASDIQDAYRTGRGSLKLRARWKIEELARGQWQMVVTELPPGVSAQKVLEEIEDITNPKV 299

Query: 293 IVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYTS 332
                 L  E                   S     R+V E K G      ++  L  +TS
Sbjct: 300 KTGKKALSQEQTQLKASMLAVLDGVRDESSKDAPVRLVFEPKTGKVPQQELITALLAHTS 359

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+S  S+N+  +    +P + +L  +L+ ++AFR+  V RR+++ L K  DR H+L G  
Sbjct: 360 LESSSSINLTMIGLDGRPVQKSLRLMLEEWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQ 419

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + N+D+V+ IIR S  P  A                                   LSE
Sbjct: 420 AVLLNIDKVIAIIRASDEPRQA-----------------------------LIDAFALSE 450

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q   ILE+RL +L  L    I  EL  L  E  +  DIL S S +  +I +E+ +   +
Sbjct: 451 RQADDILEIRLRQLARLEAIKIEQELKELRTEQGKLEDILGSESTMRRLICKEIEADAKQ 510

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
               RRT I E    + +   +V E   V +S  G+V        R ++  G     +  
Sbjct: 511 FADARRTLIQEEKKVVAE-VKVVDEPTTVIISDKGWV--------RTRQGHGVDAGTLSF 561

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           +  D +   F   T   +L F S G +Y   V +LP G     G+ +  ++ L  G +I 
Sbjct: 562 KAGDSLHGTFECRTVDQLLAFGSNGRIYSVPVAQLPGGRGD--GQPVTTLIELEAGTQIL 619

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL------ 685
                           ++ +   G      + D +   ++GK  + L   + +       
Sbjct: 620 YYFA------GAEGTALLLSGSGGYGFVAMVGDMVSRQKAGKAFVTLADGETLCAPSTAY 673

Query: 686 ------SVETCTQEN---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
                   E    E           ++  +  G+ + F I++++  A +   G+  + L 
Sbjct: 674 GVPMGARAEPQEGEQGAGLLLPATHVICASTGGRILTFEIASLKHMA-KGGRGLMLLDLE 732

Query: 731 KGDQVISMAI 740
             D +   A 
Sbjct: 733 DKDTLAGAAA 742


>gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
 gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC
           43325]
          Length = 752

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/773 (30%), Positives = 377/773 (48%), Gaps = 71/773 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI    + +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 7   EGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 67  SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 126 ESRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HN+ E+ D  V +IDNP   LD L+ +++GPD+PT   +I  +  I+  Y  GRGS+ +
Sbjct: 186 PHNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRGSVRM 245

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYR 309
           R V   E        IV+T +P+Q + + ++ +IA+ +  K++  + D+RDE+D +   R
Sbjct: 246 RAVWKKEDGE-----IVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHESPIR 300

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI  +      D ++  L+  T L+  + VNM  +    KP   +L+ IL  ++ FR  
Sbjct: 301 IVIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKSLVEILTEWLQFRRT 360

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL IA  N+DEV++IIR    P+                
Sbjct: 361 TVTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIRNEDEPKQ--------------- 405

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AIL LRL  L  L   +++ E + L  E    
Sbjct: 406 --------------VLIARFNLTDEQAEAILNLRLRHLAKLEEHELQAEKDRLEEERDSL 451

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHL 545
              L S  RL G+IK+E+        +PR + +VE      + + D    E + V +S +
Sbjct: 452 QLTLGSERRLNGLIKKEIQQDAKTYTSPRLSPLVERAEAKAISESDMTPAEPVTVILSEM 511

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R  +        +  +  D         ++ + +F  S G  Y      
Sbjct: 512 GWV--------RCAKGHDIDVQNISYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLT 563

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +++G+ L   L+L  G          +      N  ++ A+  G     K  D 
Sbjct: 564 LPSA--RSQGEPLTGKLTLPAGA------SVEQVLIETENQPLLMASDAGYGFICKFEDL 615

Query: 666 IQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +  N++GK  + L     +L   +   +   ++  T  G+ + FP   +       + G 
Sbjct: 616 VARNKAGKALISLPENARVLPPLKLTNETALLVALTSAGRMLIFPAKDLPSL----AKG- 670

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
                 KG++++++  V   D         +   S+     SG  +     + 
Sbjct: 671 ------KGNKIVTIPAVNAKDRSELLVRLLLIEESSTLVFHSGKRKVTLKPEE 717



 Score = 40.5 bits (93), Expect = 1.3,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 67/190 (35%), Gaps = 20/190 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+ IS   GD+ ++ A      A          +      L S  ++    
Sbjct: 515 RCAKGHDIDVQNISYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+   E   + Q +L  S+ G+G      D    N++GK + +   + 
Sbjct: 575 TGKLTLPAGASVEQVLIET--ENQPLLMASDAGYGFICKFEDLVARNKAGKALISLPENA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                 L  +   N+   ++ ++  G ++  P  ++       KG       K  ++V++
Sbjct: 633 R----VLPPLKLTNETALLVALTSAGRMLIFPAKDLPSL---AKG-------KGNKIVTI 678

Query: 895 ERIRESEIVD 904
             +   +  +
Sbjct: 679 PAVNAKDRSE 688


>gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
 gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1]
 gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1]
          Length = 747

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 376/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPISLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
 gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131]
          Length = 751

 Score =  530 bits (1366), Expect = e-148,   Method: Composition-based stats.
 Identities = 240/740 (32%), Positives = 378/740 (51%), Gaps = 70/740 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+  + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG  TVD+ PN+DG+  EP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA++D P ++LD +M  + GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E  +      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWEKEDGNA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDES+ +   R+VI  +      + ++  L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESNHENPTRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++A+R + V  R  + L K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 348 VEILNEWIAYRRQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEP---K 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM R                            +S+ Q  AILEL+L  L  L    IR
Sbjct: 405 AVLMSR--------------------------FNISDTQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL S  RL  +IK+E+ +   +    RR+ + E      M + + 
Sbjct: 439 GEQDELAKERDDLQAILGSERRLNTLIKKEIQADAKDYGDDRRSPLHEREEAKAMSEHEI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R+ +      + +  +  D         ++ + +F 
Sbjct: 499 LPSEPITVVLSDMGWV--------RSAKGHDIEPTNLNYKAGDGFKGAARGKSNQAAVFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    +++G+ L   L+L  G  I  ++       + +    + A+
Sbjct: 551 DTTGRSYSVDPLELPSA--RSQGEPLTGKLTLPPGATIEHVL------MAPDEQKYLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L    ++L+      E +  +L  TK G+ + FP+
Sbjct: 603 DAGYGFICTFNDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLAITKAGRMLIFPV 662

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           + +   +     G + I++A
Sbjct: 663 ADLPQLS--KGKGNKIINIA 680



 Score = 45.6 bits (106), Expect = 0.040,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 8/159 (5%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD     A      A          +      L S  ++        +   G   E  
Sbjct: 530 KAGDGFKGAARGKSNQAAVFLDTTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIE-- 587

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   EQ  L  S+ G+G   +  D    N++GK + +   +       L  +   N+
Sbjct: 588 HVLMAPDEQKYLMASDAGYGFICTFNDLVTKNKAGKALISLPENAK----VLAPIELHNE 643

Query: 850 NDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            + ++L ++  G ++  PV ++   S+  KG  I + A 
Sbjct: 644 QEDLLLAITKAGRMLIFPVADLPQLSK-GKGNKIINIAG 681


>gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
 gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4]
          Length = 758

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 236/737 (32%), Positives = 375/737 (50%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  S      G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAIKLSL----DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+  R V  +E        IV+T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYETGRGSLKARAVYSVEAGE-----IVITALPHQASSGKILEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KDLLTEWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AILEL+L  L  L    I+
Sbjct: 408 AELMAR--------------------------FNLTDKQAEAILELKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +L S  RL  +IK+EL+   +     RR+ IVE        +++ 
Sbjct: 442 AEQDELEAEREKLELLLGSDRRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSEKGWV--------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++         +    + AT
Sbjct: 554 DSSGRAFATDSHSLPSA--RSQGEPITTRFNMAPGETMQHVIL------GEDEQCFLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L    + L      +  +  IL  T  G+ + F +
Sbjct: 606 DAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREMSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
 gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP]
          Length = 747

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKQEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILNEWLD 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678



 Score = 38.2 bits (87), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               ++ ++  G ++  P  ++ + S+  KG  + 
Sbjct: 643 STALVVAITSAGRMLIFPAQDLPVLSK-GKGNKMI 676


>gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
 gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002]
          Length = 791

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/784 (30%), Positives = 367/784 (46%), Gaps = 77/784 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 37  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVV 96

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 97  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 156

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++   TVDF PNYDG+F EP +L AR P VL+NG  GIAVG+AT IP HNL EV
Sbjct: 157 AELLLSEIDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 216

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
               VA++DNP++    LM  + GPDFP G   I     I  AY +GRGS+ +R    +E
Sbjct: 217 AGAAVALLDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVE 276

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------------DL 299
           K +  + +++VTE+P   +   +L +I E    K                         +
Sbjct: 277 KLARGQWRVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRV 336

Query: 300 RDESDRQ-GYRVVIELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD     R+V E K      D  +N L   TSL+   ++N+V +    +P +  L  
Sbjct: 337 RDESDSDSPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDGRPGQKGLKP 396

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++AFR   V RR ++ L++   R H+L G  IA  ++DEV+R+IR S  P+     
Sbjct: 397 ILAEWLAFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPK----- 451

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+EVQ   ILE+RL +L  L    +  E
Sbjct: 452 ------------------------PDLIKAFGLTEVQAEDILEIRLRQLARLEGFKLEKE 487

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L+ L  E +    +L++   L G+++ E+ +   +    RR+ I            I  E
Sbjct: 488 LSELREEREGLRHLLATPDALTGLMRDEIQADAAKYGDARRSEIK-AAERAVLTQTIADE 546

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+       S +  +D D +  +    T   V+   S G
Sbjct: 547 PVTIILSQKGWI--------RARVGHNVDLSALSFKDGDALATVVETRTVWPVIVLDSKG 598

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G     G  + +++ L  G +   ++         ++   V A   G 
Sbjct: 599 RAYTVDPAVVPTGRGD--GVPVASLVELQDGAKPAQLLS------GPDSTRFVLANSGGY 650

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN------DILLTTKLGQCVRFPI 710
               K+ D     ++GK  M L+   E +        +       ++     G+ + FP 
Sbjct: 651 GFIAKIGDMAGRVKAGKAFMTLEDG-ESVLAPLHVPASAKLDALRLVAAADNGRLLAFPA 709

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
             ++  A     G+  + L +G+ + ++ +V    A    +    K    +  L   D +
Sbjct: 710 GELKELA--KGRGLMLMQLGEGEALTAIGLVGGDKAQLTAQSVRGKQSEEKVALAEYDGK 767

Query: 771 EITS 774
               
Sbjct: 768 RARR 771


>gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 785

 Score =  530 bits (1365), Expect = e-148,   Method: Composition-based stats.
 Identities = 244/779 (31%), Positives = 375/779 (48%), Gaps = 86/779 (11%)

Query: 1   MTEHIISSDE-EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M+++   + +  + +    + +    Q +YL YA++V+ GRA+PD+ DG+KPV RRILF 
Sbjct: 1   MSDNDQPTLDFSQPESGDHLGLASYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYV-------KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +            K AR+ G+V+G++HPHG+ + YDAL R+AQD+S R  LI+
Sbjct: 61  MERMGLAYGGPTRNVPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL + A  LLD++ + TV F PNYDGS +EP  L AR P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLTRIASLLLDEIDQGTVGFVPNYDGSTEEPRQLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
             L+NG  GIAVG+AT IP+HNL E+ D CVA++ NP +  + L  ++ GPD+P G  I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLREIADACVALVKNPKLADEELAAMVPGPDYPGGGQII 240

Query: 233 GRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
              G I++AY TGRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+I EL   K
Sbjct: 241 SSPGDIQDAYRTGRGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPK 300

Query: 292 RIVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYT 331
                  L  E                   S     R+V E K G      ++  L  +T
Sbjct: 301 VKAGKKALSQEQTQLKATVLGVLDVVRDESSKDAPVRIVFEPKTGKVPQQELITTLLAHT 360

Query: 332 SLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N+  +    KP + +L  +L+ ++AFR++ + RR+++ L K  DR H+L G 
Sbjct: 361 SLETSAPINLTMVGLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              + N+DEV+ IIR +  P+ A                LI+                LS
Sbjct: 421 QTVLLNIDEVIAIIRTADEPKAA----------------LIER-------------FRLS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q   ILE+RL +L  L    I  EL  L  E  +  DIL++ + L  ++ +E+ +   
Sbjct: 452 DRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILANPASLRRLMVKEIEADAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           +    RRT I         E  +V E + V VS  G+V        RA++  G       
Sbjct: 512 QFADARRTLIQADKRA-TAEVKVVDEPVTVVVSQKGWV--------RARQGHGHDAGTFA 562

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D +   F   T  +++ F S G VY   V +LP       G+ +  ++ L  G + 
Sbjct: 563 FKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGD--GQPITTLIELEAGTQP 620

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL---SV 687
                         N  ++ A   G      +      NR GK  + L   +++      
Sbjct: 621 VHYFA------GPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHA 674

Query: 688 ETCTQEN------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
              +          +   +  G+ + F I+ ++  A     G+  I L   D +   A 
Sbjct: 675 AFTSGSQALVPATHVCCASAGGRILTFEITELKQMAN-GGRGLMLIDLEPKDTLAGAAA 732


>gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 748

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/743 (32%), Positives = 387/743 (52%), Gaps = 68/743 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+G
Sbjct: 183 TDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +
Sbjct: 243 SIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ 
Sbjct: 298 NPIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLT 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA          
Sbjct: 358 FRRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---------- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q+ AIL LRL  L  L   +++ E + L  E
Sbjct: 408 -------------------LMARFNLSEAQSEAILNLRLRHLAKLEEHELQAEKSQLEKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V 
Sbjct: 449 RDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVI 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y  
Sbjct: 509 LSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYAL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   ++L +G  +  ++       + ++  V+ A+  G      
Sbjct: 561 DPTSLPSA--RSQGEPLTGKITLPEGATVQQVL------MANSDTKVLMASDSGYGFICS 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L  +    + ++ L   + +G+ + FPI+ +   +  
Sbjct: 613 FEDLVSRNKAGKAVISLTENAKVLPPQLIENDAELSLVAMSSVGRMLVFPITELPQLS-- 670

Query: 720 NSVGVRGISL-----AKGDQVIS 737
              G + I++      +G+++++
Sbjct: 671 KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 67/178 (37%), Gaps = 22/178 (12%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD       + HA    ++ + ++        L         S
Sbjct: 516 RCAKGHDIDVQGLSYRAGD-----GYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARS 570

Query: 775 LKNDSSVEGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                + +  + E    +   +   +  +L  S+ G+G   S  D    N++GK + +  
Sbjct: 571 QGEPLTGKITLPEGATVQQVLMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLT 630

Query: 832 VSKINEIGALVAVFPVNDND---QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
            +       L+      +ND    ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 631 ENAKVLPPQLI------ENDAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
 gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S]
          Length = 762

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/753 (31%), Positives = 378/753 (50%), Gaps = 72/753 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++   +    I      D +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  + +
Sbjct: 1   MTDFRDPFDAIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLKM 60

Query: 66  EWNKK---------------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           E                   Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+SLR  L
Sbjct: 61  EPGGASPDVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFG++DGD  AA RYTE RL +AA  L+  L + TV+FRP Y+G  QEP V    
Sbjct: 121 VDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGL 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+L NG  GIAVGMAT+IP HN+ E++D    +IDNPD +   LM I+RGPDFPTG V
Sbjct: 181 FPNLLANGASGIAVGMATSIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDFPTGGV 240

Query: 231 ILGRTGIKNA-YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++    I +  YATGRGS   R   H E         VVT+IP+QV K+ ++E+IA L+ 
Sbjct: 241 LVDSPSIISEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALIN 300

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GY 347
           ++++  +AD+RDESD    R+VIE + R    DV+++ L+R T L++ F +N+  L+   
Sbjct: 301 DRKLPILADVRDESDEL-IRIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVLDATR 359

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P    L  +L  ++  + +V+V+R ++ L+K   R  +L G  IA  NLD V+ IIR  
Sbjct: 360 TPRVLGLKPVLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTE 419

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P+                                     L++ Q  AIL +RL  L  
Sbjct: 420 DEPKE-----------------------------VMMAEFGLNDRQAEAILNMRLRSLRK 450

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE 522
           L   ++R E + L  E  + + ++ S +R    +K++L  ++           RRT + E
Sbjct: 451 LEEMELRREHSELLKERDDLIKLVESPARQRTRLKKDLADLRKRYSPDSDFGRRRTLVEE 510

Query: 523 GLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                E   E  I +E + V +S  G+++ +      +  R       +  ++ D     
Sbjct: 511 AAPAREIPLEAMIEKEPITVILSERGWIRAM------SGHRDLASADTLKFKEGDGPMIA 564

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F   T   +L  +  G ++     +LP G     G  + +++ ++   +I  +MP     
Sbjct: 565 FHAQTTDKLLLATETGRIFTLGADKLPGGRGF--GDPVRSLVDMDGTGQIVALMP----- 617

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE-NDILLT 699
            +     ++ A+  G      ++D I   R GK  + + +  ++  V     + + + + 
Sbjct: 618 -ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAPDADSVAVV 676

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +  + + F +  +   A     GV+      G
Sbjct: 677 GENRKLLVFSLIEMPRMA--RGQGVQMQRYRDG 707


>gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1]
 gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1]
          Length = 758

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 238/737 (32%), Positives = 377/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  S      G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAIKLSL----DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V+ CVA++D P +DL+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+  R V  +E        IV+T +P+Q +   +LE IA  ++ K++  +A
Sbjct: 236 AKIYETGRGSLKARAVYSVEAGE-----IVITALPHQASSGKILELIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KDLLTEWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AILEL+L  L  L    I+
Sbjct: 408 AELMAR--------------------------FNLTDKQAEAILELKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +L S  RL  +IK+EL+   +     RR+ IVE        +++ 
Sbjct: 442 AEQDELEAEREKLEQLLGSERRLKTLIKKELIQDGETYGDDRRSPIVERHESKALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R+ +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSDKGWV--------RSAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++         +    + AT
Sbjct: 554 DSSGRAFATDSHSLPSA--RSQGEPITTRFNMAPGETMQHVIL------GEDEQCFLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L  +   +  +  IL  T  G+ + F +
Sbjct: 606 DAGYGFICTFNDMVSRNKAGKALLSLPTNAKSLPPKPIDRNREMSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB0_50A10]
          Length = 753

 Score =  530 bits (1364), Expect = e-148,   Method: Composition-based stats.
 Identities = 247/804 (30%), Positives = 409/804 (50%), Gaps = 62/804 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E+    S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY
Sbjct: 3   EQDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA R
Sbjct: 63  KKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K A  L+ +L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+
Sbjct: 122 YTESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP+HN+ EV+D  +  ++NP  +L  L +II+GPDF     +I     +   Y+TGRG  
Sbjct: 182 IPSHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGGF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             +     EK       I++  +PYQ + + +LE+IA+ + +K+I  + DL DE D  + 
Sbjct: 242 KAQAHWTQEKNE-----IIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKEP 296

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+VI LK    +A  ++N L+  T LQ  +  NM  ++    P+ FTL+ ++K ++ FR
Sbjct: 297 VRLVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKGGPKVFTLVELIKEWLVFR 356

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +  V R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+              
Sbjct: 357 KNTVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK------------- 403

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS++Q  AILE+RL +L  L +  +  E ++L  E  
Sbjct: 404 ----------------EIIKAFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLLEEQN 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVS 543
           +   IL S++RL  +IK ELL +KDE    R++ I E        +E+ +V E + V +S
Sbjct: 448 KIEKILGSKTRLKTLIKNELLEIKDEFGEDRKSPIKESSEAKVFSEEETLVTESITVVLS 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+ +      S +  R ED + D     ++   +F  S G  Y    
Sbjct: 508 EAGWI--------RSAKGHEIDPSSLSYRGEDKLQDFCRGKSNQLSVFLDSNGKAYSLPS 559

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           + LP    +  G  +   +S + G +  + +   +     ++ Y++  T  G    ++  
Sbjct: 560 YSLPSA--RGMGDPISGRVSADSGVKFISTLIGND-----DDKYMIMNTA-GYGYISEFK 611

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +   +SGK  MKL +  ++L      +++  I   + +G+ + F I+ + V       
Sbjct: 612 NMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIGRLLIFEINELPVLP--KGK 669

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G + I++     V     + HA          ++       L   D E   S +      
Sbjct: 670 GNKIINIPTSKFVAKEEYMAHAQLISPSSSLRVESGKRFLTLKLKDLENYISSRAKRGNM 729

Query: 783 GNISEERCQELKLKEQFILTVSEK 806
                 +   +  + +   +VSE+
Sbjct: 730 LPQGYRKVDNMIEEVEATDSVSEE 753


>gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 939

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 233/782 (29%), Positives = 374/782 (47%), Gaps = 71/782 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
             +YL YAI+V+ GRA+PD+ DG+KPV RRIL+ M ++G+  + K VK AR+ GEV+GKY
Sbjct: 177 SRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAMKRLGLNPDVKTVKSARVVGEVLGKY 236

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG++A YDA+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL K A  LL +
Sbjct: 237 HPHGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSADGDGAAAMRYTEVRLSKYADLLLGE 296

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L K TV F PNYDG+ +EPV+L AR P +L+NG  GIAVGMAT IP+HNL EV +  + V
Sbjct: 297 LDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSSGIAVGMATEIPSHNLTEVGEAAIEV 356

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP+I  D L+EI++GPDFP GA ++   + IKN Y +G G++ +R   H E+ S  + 
Sbjct: 357 IRNPEITTDELLEIVKGPDFPGGAQVISSASDIKNVYRSGYGNLQVRATYHFEELSRGQW 416

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRDESDRQ 306
           Q+V   +PY+V+   ++ ++  L   K                      ++ +RDES  +
Sbjct: 417 QLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSLTAKQQQDKQLIMNVMSGMRDESSAE 476

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+VI+ K +    + +++ +   TSL++    N+V +    KP +  L  IL  +V+
Sbjct: 477 APVRLVIDPKSKSIDREELVSTILSKTSLETSCKFNLVVIGIDGKPRQKGLKDILSEWVS 536

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V  R++  LN+A  R H L G  I + +++EV+RIIR + +P+            
Sbjct: 537 FRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIEEVIRIIRGADDPKK----------- 585

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   ILE++L +L  L    +R EL  L  E
Sbjct: 586 ------------------ELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNE 627

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
            +    +L+   +L   + +E+    D     RRT I E          ++ E + V VS
Sbjct: 628 AERLRGLLTDEKKLRREVTKEIRQDIDTYGDERRTLIEEAKGA-SIAKQVIDEPVTVIVS 686

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+++  G     +  +  D         +  ++   S+ G +Y   V
Sbjct: 687 EKGFL--------RSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPV 738

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +  G  +   +    G+         +     ++  ++F +        K+S
Sbjct: 739 SSLPSA--RGEGTHVSAFVQFQDGDVP------FDYICGASDTVLLFTSDAAMGFFCKMS 790

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D   + + G  +  +    + L V+  T     I   +  G+ V F    +R  +     
Sbjct: 791 DL-AVRQRGGKSFFILDGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDELRALSS-GGK 848

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G   ++L   +++++   +         +    K         S +       +    VE
Sbjct: 849 GTTIMALQDDEKLVAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRRGRKGRFVE 908

Query: 783 GN 784
             
Sbjct: 909 AK 910


>gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae]
          Length = 751

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 246/762 (32%), Positives = 378/762 (49%), Gaps = 76/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E           G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSEIT-------HDGVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG  TV + PN+DG+  EP  L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV    VA+++NP  DL+ LM+ I  PD+PT   +I  +  I
Sbjct: 173 TTGIAVGMATDIPPHNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V  I+         V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 QKIYQTGRGSIRLRAVWEIDDGHA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR E V  R  + L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 VEILNEWLLFRRETVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKA-- 405

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  +ILEL+L  L  L    +R
Sbjct: 406 ---------------------------VLVARFALSETQAESILELKLRHLAKLEEFKLR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  +   IL S  RL  +IK+E+ +        RR+ + E +    M + D 
Sbjct: 439 GEQDDLAKERDQLQAILGSERRLNTLIKKEIETDAQTYGDDRRSPLKERIEAKAMNEHDI 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      + +  +  D         T+  V+F 
Sbjct: 499 LPSEPVTIILSVMGWV--------RSAKGHDIDPTNLNYKAGDGFCSAARGKTNQPVVFL 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+L  G  I  ++   E++        + A+
Sbjct: 551 DSTGRSYSLDPLDLPSA--RGQGEPLTGKLALPPGATIEHVLTAAEEQKY------LLAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       SD +  N++GK  + L S  ++L+      E    +L  TK G+ + FP+
Sbjct: 603 DAGYGFICTFSDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLAITKAGRMLIFPV 662

Query: 711 SAIRVFAGRNSVGVRGISLAK------GDQVISMAIVLHADA 746
           S +   +     G + I+++        D ++ +  +    +
Sbjct: 663 SELPQLS--KGKGNKIINISAAQSASRDDLLVWLMFLQPQSS 702



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
              +EQ  L  S+ G+G   +  D    N++GK +             ++A   VN+  Q
Sbjct: 591 TAAEEQKYLLASDAGYGFICTFSDLVAKNKAGKALITL-----PSNAKVLAPLEVNNEQQ 645

Query: 853 --IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
             ++ ++  G ++  PV+E+   S+  KG  I + +
Sbjct: 646 DLLLAITKAGRMLIFPVSELPQLSK-GKGNKIINIS 680


>gi|310816010|ref|YP_003963974.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
 gi|308754745|gb|ADO42674.1| DNA gyrase, A subunit [Ketogulonicigenium vulgare Y25]
          Length = 424

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 232/391 (59%), Positives = 293/391 (74%), Gaps = 7/391 (1%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M++     + + EK          ++SI  EM+ +YL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MSDTPDLPETDAEKTPERPIHAGPTISIAQEMRTAYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M + G   +K + K AR  G+ MGKYHPHG+++IYDALARMAQD+S+ L LIEG
Sbjct: 61  RRILFAMNESGNTHDKAFRKSARAVGDTMGKYHPHGDSSIYDALARMAQDFSMSLQLIEG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD PAA RYTE RL K A F+L D+ KDTVDF+ NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSPAAMRYTEARLAKVASFMLADIDKDTVDFQDNYDGKDKEPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D  +A+I NPD+  + LM+ +  PDFPTG +ILG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDATIALIKNPDLTSEDLMQYVPAPDFPTGGMILG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGSI++R  SH+E+   DR  I+V ++PYQVNK+ M++KIAE VR+KRI
Sbjct: 241 RSGARKAYLEGRGSILMRARSHVEEIRKDRYAIIVDDVPYQVNKSNMIDKIAEAVRDKRI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
             IA ++DESDR G RVVIELKR A+ADV+LNQLYR++ +Q  F  NM+ALNG +PE  T
Sbjct: 301 EGIAHIQDESDRNGVRVVIELKRDATADVVLNQLYRFSPMQISFGANMLALNGGRPETLT 360

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           L   L+ F+ FREEVV RRT + L KAR+RA
Sbjct: 361 LYRFLQCFIDFREEVVARRTAFELRKARERA 391


>gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113]
 gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113]
          Length = 747

 Score =  529 bits (1363), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/748 (31%), Positives = 373/748 (49%), Gaps = 69/748 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    + +  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+  + KY K 
Sbjct: 8   DIEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKS 67

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RYTE
Sbjct: 68  ARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPD-DPKSFAAMRYTE 126

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL   A  LL ++G+ TV++ PN+DG+ QEP +L AR P+VL+NG  GIAVGMAT+IP 
Sbjct: 127 ARLAPFAELLLAEVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPP 186

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIR 251
           HNL EV   C+ ++  P+  +  L E + GPD+PT   +I     +   Y TG+GS+ +R
Sbjct: 187 HNLHEVAAACLHLLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLR 246

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E+ +     IVV  +P+QV+ A +LE+IA+ ++ K++  +ADLRDESD +    +
Sbjct: 247 ARYRVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRL 301

Query: 312 IELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEV 368
           + +      +V  +++ L+  T L+  + VN   +    +P+   L  +L  +  FR   
Sbjct: 302 VLVPHARRIEVETVMSHLFATTDLERSYRVNFNVIGLDGRPQVKNLRDLLGEWFHFRIGT 361

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR +Y L K  DR  VL GL IA  N+DEVV IIR    P+                 
Sbjct: 362 LRRRFQYRLEKVEDRLQVLAGLLIAYLNIDEVVAIIRNEEVPK----------------- 404

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AILEL+L  L  L    I+ E  +L  E K   
Sbjct: 405 ------------PVLIARFKLSDRQAEAILELKLRYLARLEETKIQAENKALAAERKRLE 452

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLG 546
            +L S SR+  +++QELL+  ++    RR+ IVE       + +  +  E + V +S  G
Sbjct: 453 KMLGSESRIKDLLRQELLADTEKFGDARRSPIVERPSATALDQQSLLPAELITVVLSEKG 512

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        RA +      + +  R  D         ++   +F  S G  Y      L
Sbjct: 513 WV--------RAAKSQDVNPAALSYRTGDSYRASARGRSNQPAVFLDSTGRSYTLPAHGL 564

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    + +G+ L   L +  G     I+       +    + + A+  G     +     
Sbjct: 565 PSA--RGQGEPLSGHLQVAPGAEFVAILL------AEPEEFYLMASNMGYGFLCQARHLY 616

Query: 667 QINRSGKIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             NR+GK  + + +  + L        + + + + T +G+ + FP+  +  F  R   GV
Sbjct: 617 TKNRAGKAVLNVSAGAKALPPVPVVDRELDQVAVATNVGRLLLFPLRDL-PFIARG-KGV 674

Query: 725 RGISLAK------GDQVISMAIVLHADA 746
           + I+++        + V ++A++    A
Sbjct: 675 KLINISSTRFAQGQEAVRALAVISQGGA 702



 Score = 43.6 bits (101), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 12/113 (10%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-D 851
           L   E+F L  S  G+G    +      NR+GK +            AL  V  V+   D
Sbjct: 591 LAEPEEFYLMASNMGYGFLCQARHLYTKNRAGKAVLNVSAGAK----ALPPVPVVDRELD 646

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ERVVSVERIR 898
           Q+ + ++ G L+  P+ ++   +R  KGV + + +        E V ++  I 
Sbjct: 647 QVAVATNVGRLLLFPLRDLPFIAR-GKGVKLINISSTRFAQGQEAVRALAVIS 698


>gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
 gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36]
          Length = 751

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 237/739 (32%), Positives = 382/739 (51%), Gaps = 67/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I  S E    G+    + +  + +YL Y++ VI+ RA+P + DGLKPV RRI + M
Sbjct: 1   MTDVIDMSLE----GVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLHAGAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L K A  LL ++G  TVD+ PN+DG+ +EP +L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEAKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV + C+ +IDNP  +L  LM  ++GPD+PT   +I     I
Sbjct: 176 VTGIAVGMATDIPPHNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TG+GSI +R V  IE        IV++ +P+QV+   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYETGKGSIKMRAVFTIESGD-----IVISALPHQVSGGKILEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT-L 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  F VN+  +   +  +   L
Sbjct: 291 DLRDESDHENPTRLVIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLNEKPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L+K   R H+L GL IA  N+DEV+ IIR   +P+   
Sbjct: 351 KKILSEWLVFRHSTVRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                         +LI                 LS  Q  A+LEL+L  L  L    IR
Sbjct: 408 -------------AELISR-------------FDLSVKQAEAVLELKLRHLAKLEEMRIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E  +   +LSS  RL  ++K+EL++  ++    RR+ I+E        +++ 
Sbjct: 442 GEQGELNTERHKLEQLLSSDRRLATLVKKELIADAEKFGDERRSPIIERKEAKALTEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+         R  +       G+  +  D   D     ++   +F 
Sbjct: 502 MPNEAVTVVLSQQGWA--------RCAKGHDVDAKGLSYKASDGYKDAAEGRSNCPAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ L    +L  G+     +       + ++   + ++
Sbjct: 554 DSSGRSFALDAHTLPSA--RSQGEPLTTRFTLAAGKTFVHAL------MADDSQQYLLSS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K SD I  N++GK  + L +   ++  +  T    +  L+ +  G+ + FP+
Sbjct: 606 DAGYGFIGKFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATDHCLIISNEGRMLIFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL 729
           S++ + +     G + +++
Sbjct: 666 SSLPLLS--KGKGNKLMNI 682


>gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Actinobacillus pleuropneumoniae serovar
           1 str. 4074]
 gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae
           L20]
 gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 748

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 239/743 (32%), Positives = 386/743 (51%), Gaps = 68/743 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+G
Sbjct: 183 TDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        IV++ +P+Q + + ++E+IA  +R K++  + D+RDESD +
Sbjct: 243 SIKMRAVWKKEDGE-----IVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ 
Sbjct: 298 NPIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLT 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA          
Sbjct: 358 FRRTTVTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTA---------- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q  AIL LRL  L  L   +++ E + L  E
Sbjct: 408 -------------------LMARFNLSEAQAEAILNLRLRHLAKLEEHELQAEKSQLEKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V 
Sbjct: 449 RDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVI 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y  
Sbjct: 509 LSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYAL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   ++L +G  +  ++       + ++  V+ A+  G      
Sbjct: 561 DPTSLPSA--RSQGEPLTGKITLPEGATVQQVL------MANSDTKVLMASDSGYGFICS 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +  
Sbjct: 613 FEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS-- 670

Query: 720 NSVGVRGISL-----AKGDQVIS 737
              G + I++      +G+++++
Sbjct: 671 KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 12/173 (6%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD  ++ A                 +      L S  ++    
Sbjct: 516 RCAKGHDIDVQGLSYRAGDGYLAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPL 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +  EG   ++    +   +  +L  S+ G+G   S  D    N++GK + +   + 
Sbjct: 576 TGKITLPEGATVQQVL--MANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENA 633

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
                 L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 634 KVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
 gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565]
          Length = 758

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 248/814 (30%), Positives = 391/814 (48%), Gaps = 72/814 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EPVVL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV   C  ++DNP+  LD LM+ I+GPD+PT   +I  R  I
Sbjct: 176 VTGIAVGMATDIPPHNAREVAYACAELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GSI  R V   E        IV+T +P+Q + A ++E+IA  +  K++  + 
Sbjct: 236 RKIYETGKGSIKQRAVWSEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVT 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P    
Sbjct: 351 KTILSEWIQFRRETVRRRLQFRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDEP---- 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             ++E Q  AILEL+L  L  L    +R
Sbjct: 407 -------------------------GKVMVERFNITETQAEAILELKLRHLAKLEEFKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E  +   IL S  RL  ++K+ELL+  ++    RRT +VE    +   +++ 
Sbjct: 442 AEQNELAEERDKLELILGSERRLNTLLKKELLADAEKYGDDRRTPLVERATAVALTEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+V        RA +      +G+  +  D         ++   +F 
Sbjct: 502 IPSEPVTVILSDKGWV--------RAAKGHDVDVAGLSYKAGDSYLAHACGRSNQQAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+LG  Y  +   LP    +++G+ L    +L  GE                    + A+
Sbjct: 554 STLGRTYALESHTLPSA--RSQGEPLTGRFALGAGEE------VRHLVMGNEGEPYLIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLT-TKLGQCVRFPI 710
             G        D I  N++GK  + +    ++++  +  + E D+ +  +  G+ + FP+
Sbjct: 606 DAGYGFVCTYDDLIGKNKNGKALLTVPEGGQVMAPQKIGSPETDLCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + + V       G + I      +   ++ + MA V+             K       L 
Sbjct: 666 NTLPVLG--KGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTLFAGKRKLTLKPSDLD 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
               E              +     +    + Q 
Sbjct: 724 YYRGERGRRGAKLPRGLQRVDRIEIEPAAGENQE 757



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 20/192 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD  ++ A            +  +    A              
Sbjct: 518 RAAKGHDVDVAGLSYKAGDSYLAHACGRSN--QQAVFLSTLGRTYALESHTLPSARSQGE 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E R   +  + +  L  S+ G+G   +  D    N++GK +       
Sbjct: 576 PLTGRFALGAGEEVRHLVMGNEGEPYLIASDAGYGFVCTYDDLIGKNKNGKALLTV---- 631

Query: 835 INEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------A 886
             E G ++A   +   + D  + +S++G ++  P+N + +  +  KG  + S       A
Sbjct: 632 -PEGGQVMAPQKIGSPETDLCMAISNEGRMLLFPLNTLPVLGK-GKGNKLISIPSARVKA 689

Query: 887 KDERVVSVERIR 898
           ++E VV    I 
Sbjct: 690 REEFVVMAAVIP 701


>gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
 gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21]
          Length = 765

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 226/754 (29%), Positives = 366/754 (48%), Gaps = 70/754 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           T  +  S  +    I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M 
Sbjct: 3   TTDLDDSGADPFDAIVDAPFDSALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMR 62

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           Q+ ++    + K AR+ GEV+GKYHPHG+ A YDA+ R+AQD++LR  L+EGQGNFG++D
Sbjct: 63  QLKLDPASGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNID 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RYTE RL K A  L++ L   TVDF P Y+   +EP ++   +PN+L NG  G
Sbjct: 123 GDNAAAYRYTEARLTKTAMRLMEGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGASG 182

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNA 240
           IAVGMATNIP+HN+ E+VD  + VIDNP ++   LMEI +GPDF TG V+      I +A
Sbjct: 183 IAVGMATNIPSHNVAEIVDATLEVIDNPHVEHARLMEIFKGPDFATGGVVPESTETISHA 242

Query: 241 YATGRGSIVIRGVSH-------------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
           Y TGRGS  +RG  H             IE+  G + Q+V++EIPYQV K  ++E+IA  
Sbjct: 243 YETGRGSFRVRGRFHAAEAEKEEDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAAA 302

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           + ++++  + D+RDESD Q   V++   R    +++   +Y+ T +++ F +N+  L+  
Sbjct: 303 IADRKLPILEDVRDESDEQIRIVLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLDRT 362

Query: 348 KPER-FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           +      L  +L+ ++A + +++ RR+++ L++   R  ++ G  IA  NLD V+ IIR 
Sbjct: 363 RTPMVMGLKELLENWIASQIDILQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEIIRT 422

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
              P+                                     L++ Q  AIL +RL  L 
Sbjct: 423 EDEPK-----------------------------PVMMDEFKLTDRQAEAILNMRLRSLR 453

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIV 521
            L    +R E + L  E  E   +L S +R    +K++L +++ E         RRT I 
Sbjct: 454 KLEEMQLRGEKDELLKEQDELEKLLGSPARQRTRLKRDLGALRKEYSEDTALGARRTTIE 513

Query: 522 E--GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           E    ++   +  I +E + V +S  G++        R  +           ++ D    
Sbjct: 514 EAAPAVEFSMDAMIEKEPVTVILSQKGWI--------RGAKGHLPLDQEFKYKEGDAPAF 565

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   +L   + G V+     +LP       G+ + N L ++   +  +++     
Sbjct: 566 VLHAQTTDKLLLIGNDGRVFTLGADKLPGARGF--GEPVRNTLDIDGQAQFVSVV----- 618

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILL 698
                   V+ A  +G          +   R G+  M +    +++         + + +
Sbjct: 619 -VHSEGQEVLLAASNGKGFAVGTDAMLAETRKGRQVMNVKGNVKLVVARPIAKAHDHVAV 677

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
                + V F +  +   A     G +  +   G
Sbjct: 678 VGDNRKLVVFNLEELPRLA--KGQGNKLQNYRDG 709


>gi|2181179|emb|CAB09528.1| gyrase alpha subunit [Acholeplasma laidlawii]
 gi|2204066|dbj|BAA20473.1| gyrase A subunit [Acholeplasma laidlawii]
          Length = 387

 Score =  529 bits (1362), Expect = e-148,   Method: Composition-based stats.
 Identities = 199/386 (51%), Positives = 277/386 (71%), Gaps = 5/386 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E+     ++    I  V+IT EM+ S+L YA++VI+ RA+P+ +DGLKPV RRIL+GM
Sbjct: 1   MSENT----DKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +  +  N  + K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++G GNFGSV
Sbjct: 57  HENNMYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL K A  ++ D+ K+TV+F  NYDGS +EP VL +RYPN+LVNG  
Sbjct: 117 DGDGAAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGST 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNLGEV+D   A +DNPDI +  LM+ ++GPDFPTG  ILG TG++ A
Sbjct: 177 GIAVGMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQILGITGLRQA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TG+G I +R    I +T  +R ++++TEIPYQVNK  ++E+IAE+V+ K I  I+DLR
Sbjct: 237 YETGKGIIAVRAQHEIVETK-NRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DES+R+G R+VIEL++  +  V LN LY++T LQ+ F +NM+AL   +P   +L   L  
Sbjct: 296 DESNRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQPRLLSLKDALTH 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHV 386
           ++A + E++ RRT++ L K +  A++
Sbjct: 356 YIAHQIEIITRRTQFDLEKLKLDAYI 381


>gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 748

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/743 (32%), Positives = 385/743 (51%), Gaps = 68/743 (9%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 4   EINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASA 63

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 64  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 122

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L AR P++L+NG  GIAVGMA
Sbjct: 123 MRYTESKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMA 182

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ +  V +++NP   L  LM +++GPD+PT   +I  +  I   Y  G+G
Sbjct: 183 TDIPPHNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKG 242

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E        IV+  +P+Q + + ++E+IA  +R K++  + D+RDESD +
Sbjct: 243 SIKMRAVWKKEDGE-----IVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHE 297

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + +++ L+  T L+  + VNM  +    KP    L  IL  ++ 
Sbjct: 298 NPIRIVIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLT 357

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR  Y L+K  +R H+L GL IA  N+DEV+ IIR    P+TA          
Sbjct: 358 FRRTTVTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTA---------- 407

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LSE Q+ AIL LRL  L  L   +++ E + L  E
Sbjct: 408 -------------------LMARFNLSEAQSEAILNLRLRHLAKLEEHELQEEKSQLEKE 448

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
             E    L S  RL  +IK+E+ +      +PRR+ +VE      + + D    ED+ V 
Sbjct: 449 RDELQLTLGSERRLNTLIKKEIQADAKAFASPRRSPLVERAEAKAISESDLTPTEDVTVI 508

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G+V        R  +       G+  R  D         ++  V+F  S G  Y  
Sbjct: 509 LSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHAHGRSNQPVVFLDSTGRAYAL 560

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   ++L  G  +  ++       + ++  V+ A+  G      
Sbjct: 561 DPTSLPSA--RSQGEPLTGKITLPDGATVQQVL------MANSDTKVLMASDSGYGFICS 612

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT--TKLGQCVRFPISAIRVFAGR 719
             D +  N++GK  + L    ++L  +    E ++ L   + +G+ + FPI+ +   +  
Sbjct: 613 FEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPITELPQLS-- 670

Query: 720 NSVGVRGISL-----AKGDQVIS 737
              G + I++      +G+++++
Sbjct: 671 KGKGNKIINISAQAAKEGNELLA 693



 Score = 40.2 bits (92), Expect = 1.6,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 67/176 (38%), Gaps = 18/176 (10%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V+G+S   GD       + HA    ++ + ++        L         S
Sbjct: 516 RCAKGHDIDVQGLSYRAGD-----GYLAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARS 570

Query: 775 LKNDSSVEGNISEERCQE---LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                + +  + +    +   +   +  +L  S+ G+G   S  D    N++GK + +  
Sbjct: 571 QGEPLTGKITLPDGATVQQVLMANSDTKVLMASDSGYGFICSFEDLVSRNKAGKAVISLT 630

Query: 832 VSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
            +       L+     N+ +  ++ +S  G ++  P+ E+   S+  KG  I + +
Sbjct: 631 ENAKVLPPQLID----NEAELSLVAMSSVGRMLVFPITELPQLSK-GKGNKIINIS 681


>gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
 gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2]
          Length = 785

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/779 (30%), Positives = 364/779 (46%), Gaps = 86/779 (11%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++  IS           ++ + D  Q +YL YA++V+ GRA+PD+ DGLKPV RRIL+ 
Sbjct: 1   MSDPSISDFSTAGNDEGETLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 60

Query: 60  MMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +         K VK AR+ G+V+G++HPHG+ + YDAL RMAQD++ R  LI+
Sbjct: 61  MGRMGLGYGGAAGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLID 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL + A  LLD++ + TVDF PNYDGS +EP  L AR P
Sbjct: 121 GQGNFGSRDGDSAAAMRYTEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
             L+NG  GIAVG+AT IP+HNLGE+   C+A+I  P +  + L+ ++ GPD+P G  I+
Sbjct: 181 FALLNGASGIAVGLATEIPSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQII 240

Query: 233 GR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
                I  AY TGRGS+ +R    IE+ +  + Q+VV E+P  V+   +LE+I EL   K
Sbjct: 241 SSAAEIAGAYQTGRGSLKLRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNPK 300

Query: 292 RIVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYT 331
             V    L  E                         R+V E K G +    ++  L  +T
Sbjct: 301 IKVGKKALSQEQTQLKASLLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAHT 360

Query: 332 SLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N+  +    +P + +L  +L+ ++AFR+  + RR+++ LNK  +R H+L G 
Sbjct: 361 SLETSAPINLTLVGLDGRPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            I + +LDEV+ IIR +  P+ A                                   LS
Sbjct: 421 QIVLLHLDEVIAIIRQADEPKAALMARWS-----------------------------LS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q   ILE+RL +L  L    I  EL  L     +  DIL+    L   + +E+ +   
Sbjct: 452 DRQAEDILEIRLRQLARLEALRIGQELKELRDRQGKLEDILNHPGALRRTLIKEIETDAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
               PRRT I      +  E  +  E + V VS  G+V        R +   G   +   
Sbjct: 512 TFADPRRTLIQAEKKAVI-EVRVPDEPVTVVVSQKGWV--------RVRSGHGHEAASFA 562

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
            +  D +   F   T  ++L F + G VY   V  LP       G+ +  ++ L  G + 
Sbjct: 563 FKAGDGLYGTFECRTVDTLLAFGNNGRVYSVAVSLLPGARGD--GQPVTTLIELEAGTQ- 619

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
                     +      ++ +   G      +   I   + GK  + L   +        
Sbjct: 620 -----VLHYFAGPAQATLLLSNSGGYGFLATVEHMISRQKGGKTFLTLAGGETPCPPSHA 674

Query: 691 TQE---------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                         +   +  G+ + F +  ++  A     G+  I L   D++   A 
Sbjct: 675 FGSTGSAPVLPATHVACASTGGRILTFELGELKTMAN-GGRGLLLIDLEDKDRLAGAAA 732


>gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
 gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799]
          Length = 754

 Score =  528 bits (1361), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/737 (32%), Positives = 376/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+H   S E    G+    +    + +YL YA+ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDHNAMSLE----GVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ ++ R  L++GQGN+G+ 
Sbjct: 57  SELGLSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TV++ PN+DG+ +EP +L +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV   C  +++NP  +L+ LM  ++GPD+PT   +I  RT I
Sbjct: 176 VTGIAVGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  +         IV+T +P+QV+ + ++E+IA  ++ K++  + 
Sbjct: 236 AKIYQTGRGSVKMRAVYQVIDGE-----IVITALPHQVSGSKLIEQIASQMQAKKLPMVT 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  + VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDNRPGVRDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR + V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P+ A 
Sbjct: 351 KSILSEWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q  AILE++L +L  L    IR
Sbjct: 410 ----------------------------LMSRFGLSEKQAEAILEIKLRQLAKLEEIKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E  +   IL S  RL  ++K+ELL+  +     RR+ +VE        +++ 
Sbjct: 442 AEQEELAAERDKLQTILGSERRLKTLVKKELLADAETYGDDRRSPLVERGEARALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S   +         R  +        +  R  D         ++  V+F 
Sbjct: 502 TPAEPVTVVMSQKAW--------GRCAKGHDVEPESLSYRAGDGYLAHARGRSNQPVVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y  +   LP    +++G+ L    +L  G R+  ++         ++ + + AT
Sbjct: 554 ESSGRAYTTEPHSLPSA--RSQGEPLSGRFNLVAGARLEHVV------MGQDDDHYLMAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     +  + +  N++GK  + + +  EIL  +       + +L  +  G+ + FP+
Sbjct: 606 DAGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQANDRLLAISTEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
           S + V A     G + I
Sbjct: 666 SQLPVLA--KGKGNKII 680


>gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1]
          Length = 644

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/697 (32%), Positives = 359/697 (51%), Gaps = 63/697 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E +    +   +G+   S+ +  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSESL----DLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   +  L E + GPDFPT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R V  +E        IV+  +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 QKVYETGRGSVRMRAVYRVEDGD-----IVIHALPHQVSGSKVLEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L++ + VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L GL IA  NLDEV+ IIR    P   +
Sbjct: 351 RQLLSEWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            LSEVQ   IL+ RL +L  L    IR
Sbjct: 408 AVLMER--------------------------FELSEVQADYILDTRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E K    +L S ++L  ++++EL+   +     RR+ IV         + + 
Sbjct: 442 GEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAEARALSETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      +G+  +  D         ++   +F 
Sbjct: 502 MPTEPVTVVLSEKGWV--------RCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ L   L+   G     ++         ++   V A+
Sbjct: 554 DSTGRSYSLPAHSLPSA--RGQGEPLSGRLTPPPGASFECVLL------PDDDALFVIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
             G     K  D    N++GK  + L +   +++   
Sbjct: 606 DAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRP 642


>gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 750

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/762 (31%), Positives = 383/762 (50%), Gaps = 73/762 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I    E +E GI  VS+    + +YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDVI----EIDEDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ++S R  L++GQGN+GS 
Sbjct: 57  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   A  LL +LG+ TVD+ PN+DG+  EP VL A+ PNVL+NG
Sbjct: 117 D-DPKSFAAMRYTESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EVV   + ++++P   +  L E ++ PDFPT   +I  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRG++ +R V   E        IVV+ +P+QV+ + +LE+IA  ++ K++  +A
Sbjct: 236 MAMYETGRGALKMRAVWEKEGPD-----IVVSALPHQVSGSKVLEQIAHQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + VN+  +    +P    L
Sbjct: 291 DLRDESDHENPTRLVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDGRPGVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             ILK ++ FR E V RR +Y L +   R H+L G  +A  N+DEV+ IIR    P+ A 
Sbjct: 351 DRILKEWLKFRTETVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +S+VQ  AIL+L+L  L  L    IR
Sbjct: 410 ----------------------------LMKRFGISDVQAEAILDLKLRNLAKLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L +E  +   IL S +RL  +IK+EL SV ++    RR+ ++         + D 
Sbjct: 442 GEQDELEVERDQLQTILGSAARLKTLIKKELQSVAEKFGDDRRSPLMARGEAQAFSELDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  + + V +S  G++        RA +      S +  +  D         ++   +  
Sbjct: 502 MTADPITVVMSEKGWI--------RAAKGHDIDPSSLSYKSGDGFKMAAKGRSNQPTVIL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+ +   ++   G     +M              + A+
Sbjct: 554 DSTGRAYTVPSHNLPSA--RGQGEPVTGRINPPSGATFEGLM------MGDEGDLYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     KL +    N++GK A+ L     ++     +  +   +   T  G+ + FP+
Sbjct: 606 DAGYGFVAKLGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGAWVAAVTNEGRLLVFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADA 746
             +   A     G + I +      ++ + VI++ ++   D 
Sbjct: 666 EDLPQMA--RGKGNKIIGIPTARVQSREEFVIAVQVLTDKDT 705



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +  +    L  S+ G+G      + +  N++GKG  A ++ K + +    A+    +   
Sbjct: 594 MGDEGDLYLLASDAGYGFVAKLGELQTKNKAGKG--ALNLPKGSGVMQPAAISEA-EGAW 650

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESE 901
           +  V+++G L+  P+ ++   +R  KG  I         +++E V++V+ + + +
Sbjct: 651 VAAVTNEGRLLVFPLEDLPQMAR-GKGNKIIGIPTARVQSREEFVIAVQVLTDKD 704


>gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
 gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3]
          Length = 758

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 239/737 (32%), Positives = 378/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  S      G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAIKLSL----DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  E+V+ CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V      S D  +IV+T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKVYETGRGSIKARAVY-----SVDAGEIVITALPHQASSGKILEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KELLTEWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AILEL+L  L  L    I+
Sbjct: 408 AELMAR--------------------------FNLTDRQAEAILELKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +LSS  RL  +IK+EL+   +     RR+ IVE        +++ 
Sbjct: 442 AEQDELEAEREKLEQLLSSDRRLKTLIKKELIQDGETYGDDRRSPIVERHESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++ + +F 
Sbjct: 502 TPSEPVTVVLSEKGWV--------RCAKGHDIDAESLSYKAGDQYLCSAMGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++         +    + AT
Sbjct: 554 DSSGRAFATDSHSLPSA--RSQGEPITTRFNMAPGETMQHVIL------GEDEQCFLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L      +  +  IL  T  G+ + F +
Sbjct: 606 DAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPRPIDRNREMSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
 gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC
           23834]
          Length = 770

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 250/823 (30%), Positives = 376/823 (45%), Gaps = 81/823 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  S++  +   +         + +YL YA++V+ GRA+PD+ DG KPV RRILF M
Sbjct: 1   MPENTASAEHSDILLLAP-----YAERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+  N K VK AR+ GE++GKYHPHG+A+ YDA+ RMAQD++LR  LI+G GNFGS 
Sbjct: 56  KEMGLAANSKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSR 115

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL +L + TVDF PNYDG+F+EPV L AR P VL+NG  
Sbjct: 116 DGDGAAAMRYTEARLTPIAELLLSELHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGAS 175

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP HNLGEV    VA++  P +    LME    PDF  G  I+     +  
Sbjct: 176 GIAVGMATEIPPHNLGEVTAAAVALLKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQ 235

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK-------- 291
            Y TG+GSI +R    IEK +  + ++V+TE+P   +   +L +I E    K        
Sbjct: 236 LYETGKGSIRVRARYEIEKLARGQWRLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQL 295

Query: 292 ----------RIVDIADLRDESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                      +  I  +RDESD     R+V E K      D  +N L   T L+     
Sbjct: 296 NQDQLNTKKLMLELIDKVRDESDGEHPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPA 355

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR ++ L +   R H+L G   A  ++D
Sbjct: 356 NLVMIGLDNRPAQKNLKTILQEWLDFRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHID 415

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+R+IR +  P+                                     LSE+Q   IL
Sbjct: 416 EVIRVIREADEPK-----------------------------PELMAAFGLSEIQAEDIL 446

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  EL  L  E     ++L+       +I +E+ +   +   PRRT
Sbjct: 447 EIRLRQLARLEGFKLEQELADLREEEGYLKNLLADEGAKKKLIIKEMQADAKQFGDPRRT 506

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++   G   S    ++ D + 
Sbjct: 507 LVA-EAERAALTHTTADEPVTLILSRQGWI--------RSRAGHGLDLSATAFKEGDELQ 557

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   +LG  Y      +P G     G  L ++L L  G  +  ++    
Sbjct: 558 QTLETRTVDPVVVLDTLGRSYTIDPAEIPGGRGD--GVPLASLLELQPGASVLAMLA--- 612

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
                   Y++  +  G     KL D +   ++GK  +KL++ + +L             
Sbjct: 613 --GQPQEHYLLAGS-GGYGFIAKLGDLVGRVKAGKEVVKLEAGETLLMPQPVHQSALINP 669

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +     + FPI  ++V A     G++ +SL   D +   A+V   D     R 
Sbjct: 670 DCRLVLASAEKHLLAFPIGELKVMA--KGRGLQLMSLRGNDTLQLTALVSTPDFWVCSRG 727

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
                   + R+   + +     +        IS    QE + 
Sbjct: 728 KRGAAHRERLRVQDIEGKRGRKGRMLDVSGSLISLSSTQEGEA 770


>gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
 gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella
           insecticola LSR1]
          Length = 751

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 240/798 (30%), Positives = 391/798 (48%), Gaps = 65/798 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              + S ++    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ 
Sbjct: 6   HDVVESQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAKFK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K A  LL +L + TVD+  N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TESRLSKYAQILLAELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HN+ E+    + +ID P+  LD L+E ++GPDFPT   +I  R  IK  Y TGRGSI 
Sbjct: 185 PPHNVQEIAQALIQLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRGSIR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R + + E+ +     +V+T +P+QV+ A +LE+IA  +R K++  I DLRDES+ +   
Sbjct: 245 MRAIWNKEEAN-----VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHENPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+VI  +      D +++ L+  T L+  + +NM  +    +P    L+ IL  ++ +R 
Sbjct: 300 RLVIIPRSNRIDLDQVMSHLFATTDLEKSYRINMNMIGLDNRPSVKGLLTILSEWLVYRC 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR  Y L+  + R H+L GL  A  N+D+V+ IIR   + ++              
Sbjct: 360 DTVRRRLNYRLDNVQRRLHILEGLLTAFLNIDKVIDIIRTEDDAKS-------------- 405

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE QT AILEL+L +L  L    +R+E      E+ +
Sbjct: 406 ---------------VLITCFSLSESQTEAILELKLRQLAKLEEKKLRSEEAEFQQELAQ 450

Query: 487 CLDILSSRSRLLGIIKQELLS----VKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVV 540
              +L S++    ++K+E+ +       + +  RR+ +++      M + D    E + V
Sbjct: 451 LQMLLESKAAFNQLLKKEIQADTAVCHHQQNHCRRSPLIQRDDAKAMNEHDIQPSEPVTV 510

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S +G+V        R+ +      SG   +  D         ++   +F  S G  Y 
Sbjct: 511 VLSKMGWV--------RSAKGHDVDPSGFNYKAGDCFRTAAQGKSNQPAVFIDSTGRSYS 562

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                LP    Q        I S                  + N+  ++ ++  G     
Sbjct: 563 LDPLTLPSARGQGEPLTGRFISSTEAVIEYV--------LMADNDQQLLLSSDAGYGFIC 614

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             SD I  NR+GK  M L S  +IL        +D+LL+   G+ + FP + +       
Sbjct: 615 HFSDLITKNRAGKALMALPSNAKILPPLKLHGADDMLLSITAGRILMFPAADLPRLT--K 672

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
             G + IS++K +++     +        +          +  L   + ++ ++ +    
Sbjct: 673 GKGNKIISISKQERMAGSDNLRWLLRLSVQASVTFYSGKRKLTLKPEELKKFSAKRGSKG 732

Query: 781 VEGNISEERCQELKLKEQ 798
                   R   +++ E 
Sbjct: 733 SLLPRGLTRIDRIEVLEP 750



 Score = 42.5 bits (98), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 21/182 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G +   GD   + A            I       +   L          
Sbjct: 519 RSAKGHDVDPSGFNYKAGDCFRTAA--QGKSNQPAVFIDSTGRSYSLDPLTLPSARGQGE 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                 +    +      +   +Q +L  S+ G+G      D    NR+GK + A     
Sbjct: 577 PLTGRFISSTEAVIEYVLMADNDQQLLLSSDAGYGFICHFSDLITKNRAGKALMAL---- 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                 ++    ++  D ++L    G ++  P  ++    R TKG       K  +++S+
Sbjct: 633 -PSNAKILPPLKLHGADDMLLSITAGRILMFPAADLP---RLTKG-------KGNKIISI 681

Query: 895 ER 896
            +
Sbjct: 682 SK 683


>gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
 gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99]
          Length = 758

 Score =  528 bits (1360), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/738 (31%), Positives = 371/738 (50%), Gaps = 69/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++      E        +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLTPDGAE-------RLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLSNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+  N+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EV    + +ID+P   LD L++I++GPD+PT   +I  R+ I
Sbjct: 173 TTGIAVGMATDIPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R V   E+       +V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRAVWKKEEGD-----VVITALPHQVSGARVLEQIAAQMRNKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +N+  +    +P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V RR  + L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 LEILSEWLVFRRDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMSRFDISETQAEAILELKLRHLAKLEEMKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDC 532
            E + L  E      +L+S  ++  ++K+EL +  D     RR+ + E        + + 
Sbjct: 439 GEQDELEKERAHLEGLLASERKMNTLLKKELQADSDAYGDDRRSPLREREEAKAIGEHEL 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S  G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 MPSEPVTIVLSQSGWV--------RSAKGHDIDPAGLSYKAGDGYLGAARGKSNQPVVFI 550

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    Q           L             +   + +   ++ A+
Sbjct: 551 DSTGRSYALDPVTLPSARGQGE--------PLTGKLTPPPGAVVEQVLMADDTQKLLMAS 602

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT-TKLGQCVRFPIS 711
             G       +D +  NR+GK  + L +   +++       +D+LL  T  G+ + FP+ 
Sbjct: 603 DAGYGFVCTFADLVSRNRAGKALLTLPANANVMAPLAIHSNDDLLLAITAAGRMLMFPVG 662

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +S+
Sbjct: 663 DLPQLS--KGKGNKIVSI 678



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 22/191 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD  +  A                 +      L S   +    
Sbjct: 515 RSAKGHDIDPAGLSYKAGDGYLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G + E+    +    Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 575 TGKLTPPPGAVVEQVL--MADDTQKLLMASDAGYGFVCTFADLVSRNRAGKALLTLPANA 632

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 ++A   ++ ND ++L ++  G ++  PV ++   S+           K  ++VS
Sbjct: 633 -----NVMAPLAIHSNDDLLLAITAAGRMLMFPVGDLPQLSK----------GKGNKIVS 677

Query: 894 VERIRESEIVD 904
           +     +   D
Sbjct: 678 IPSAEAASGED 688


>gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
 gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145]
          Length = 739

 Score =  528 bits (1359), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/737 (30%), Positives = 370/737 (50%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++W  K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWTSKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L + +  LL +LG+ T +++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSQYSELLLSELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP++  + + E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
                 S D+ +I++TE+PYQV+ + ++ +IA+ ++ K++  ++D+RDESD     R+VI
Sbjct: 249 Y-----SVDKNEIIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHANPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VNM  +    +P+  ++  IL  ++  R+  V 
Sbjct: 304 VLRSNRIDAESVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKTTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LNK   R H+L GL IA  N+DEV++IIR    P+                   
Sbjct: 364 RRLQYHLNKIEKRLHILGGLIIAYLNIDEVIQIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   ++R E   L  +     + 
Sbjct: 405 ----------PVLMQRFNIDEIQAEAILELKLRHLAKLEEMEMRREQEELEAKAAVIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I  EL     +    RR+ IV+      + + + +  + + V +S  G++
Sbjct: 455 LANPESLKSLIISELKDDAKKFGDDRRSPIVQRAEAAVINETEMLPADPVTVVLSEAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           +        A+         +  R  D         ++  V      G  Y   +  LP 
Sbjct: 515 RCAKGHEVDAEN--------LNFRAGDQYLSHAQGKSNQRVYVLDDTGRSYALAINTLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +   + +   ++ A+  G   + +       
Sbjct: 567 ARGLGE--------PLSSKLSPGSGVGFKQVLVAEDETEILAASNKGYGFKTQAKQLDTS 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + L    E+++++       + L +  G+ +   ++ + V       G + I 
Sbjct: 619 AKAGKAFLNLSEGAEVMNLQPLEDATHVALLSSAGRLLIVDLAELPVLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L  GDQ++SM ++   +
Sbjct: 677 LEDGDQILSMTLLKLDE 693



 Score = 53.6 bits (127), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 77/188 (40%), Gaps = 17/188 (9%)

Query: 727 ISLAKGDQVISMAI--------VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           I  AKG +V +  +        + HA    ++R+  +        L          L   
Sbjct: 514 IRCAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDDTGRSYALAINTLPSARGLGEP 573

Query: 779 SSVE---GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
            S +   G+    +   +   E  IL  S KG+G +T +     S ++GK         +
Sbjct: 574 LSSKLSPGSGVGFKQVLVAEDETEILAASNKGYGFKTQAKQLDTSAKAGK-----AFLNL 628

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           +E   ++ + P+ D   + L+S  G L+ V + E+ + ++  KG  +      ++++S+ 
Sbjct: 629 SEGAEVMNLQPLEDATHVALLSSAGRLLIVDLAELPVLNK-GKGNKLIQLEDGDQILSMT 687

Query: 896 RIRESEIV 903
            ++  EI+
Sbjct: 688 LLKLDEII 695


>gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
 gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1]
          Length = 762

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 237/753 (31%), Positives = 379/753 (50%), Gaps = 72/753 (9%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           ++   +    I      D +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M  + +
Sbjct: 1   MTDFRDPFDAIKDHPFDDALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRM 60

Query: 66  EWNKK---------------YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           E                   Y KCAR+ G+V+GKYHPHG+A++YDA+ R+AQD+SLR  L
Sbjct: 61  EPGGASPDVLVANPARNTTSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPL 120

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++GQGNFG++DGD  AA RYTE RL +AA  L+  L + TV+FRP Y+G  QEP V    
Sbjct: 121 VDGQGNFGNIDGDNAAAMRYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGL 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+L NG  GIAVGMAT+IP HN+ E++D    +IDNPD +   LM+++RGPDFPTG V
Sbjct: 181 FPNLLANGATGIAVGMATSIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDFPTGGV 240

Query: 231 ILGRTGIKNA-YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
           ++    I +  YATGRGS   R   H E         VVT+IP+QV K+ ++E+IA L+ 
Sbjct: 241 LVDSASIISEAYATGRGSFRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALIN 300

Query: 290 EKRIVDIADLRDESDRQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GY 347
           ++++  +AD+RDESD Q  R+VIE + R    D++++ L+R T L++ F +N+  L+   
Sbjct: 301 DRKLPILADVRDESDEQ-IRIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVLDATR 359

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P    L  +L  ++  + +V+V+R ++ L+K   R  +L G  IA  NLD V+ IIR  
Sbjct: 360 TPRVLGLKPVLIEWLKHQIDVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTE 419

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
             P+                                     L++ Q  AIL +RL  L  
Sbjct: 420 DEPKE-----------------------------VMMAEFGLNDRQAEAILNMRLRSLRK 450

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE 522
           L   ++R E + L  E  + L ++ S +R    +K++L  ++           RRT + E
Sbjct: 451 LEEMELRREHSELLKERDDLLKLVESPARQRTRLKKDLADLRKRYSPDSDFGRRRTLVEE 510

Query: 523 GLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
                E   E  I +E + V +S  G+++ +      +  R       +  ++ D     
Sbjct: 511 AAPAREIPLEAMIEKEPITVILSERGWIRAM------SGHRDLASADTLKFKEGDGPMIA 564

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F   T   +L  +  G ++     +LP G     G  + +++ ++   +I  +MP     
Sbjct: 565 FHAQTTDKLLLATETGRIFTLGADKLPGGRGF--GDPVRSLVDMDGTGQIVALMP----- 617

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLT 699
            +     ++ A+  G      ++D I   R GK  + + +  ++  V       + + + 
Sbjct: 618 -ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAADADSVAVV 676

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
            +  + + F +  +   A     GV+      G
Sbjct: 677 GENRKLLVFSLIEMPRMA--RGQGVQMQRYRDG 707


>gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
 gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989]
          Length = 749

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/759 (30%), Positives = 377/759 (49%), Gaps = 74/759 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+  +   + +E      +S+ D  + +YL Y++ VIL RA+P++ DGLKPV RRI++ M
Sbjct: 1   MSNIVKPPESDET-----ISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++   K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS 
Sbjct: 56  SELGLKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSP 115

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL   +  LL +LG+ TV++ PN+DG+  EP VL A+ PN+L+NG
Sbjct: 116 D-DPKSFAAMRYTESRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNG 174

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HNL EVV  C+ ++ NP   +  LME +  PD PT   +I     I
Sbjct: 175 TTGIAVGMATDIPPHNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDI 234

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGS+ +R +   E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 235 QTMYETGRGSLRMRCIWGQEDGD-----IVVTSLPHQVSGAKILEQIAAQMQAKKLPMVA 289

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           DLRDESD +   R+VI  +      + +++ L+  T L+  + +NM  +          +
Sbjct: 290 DLRDESDHENPTRLVIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGLPAVKPL 349

Query: 356 GIL-KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            ++   +++FR   V RR +Y L+K   R H+L G   A  N+DEV+ IIR    P+   
Sbjct: 350 NVILTEWLSFRMVTVRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKPKQ-- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             ++++Q  AILEL+L ++  L    IR
Sbjct: 408 ---------------------------VLMDRFGVTDIQAEAILELKLRQIAKLEEIKIR 440

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E +    IL+S ++L  ++K+EL ++ ++    RR+ IV         + D 
Sbjct: 441 GEQDELAKEGEWLEGILASATKLKNLVKKELQAIAEKYGNDRRSPIVVRGEAQALSEMDL 500

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  + + V +S  G++        R+ +      + +  +  D         T+ + L  
Sbjct: 501 LTSDPITVVLSEKGWI--------RSAKGHDVDPAALSYKAGDAYMFSAKGKTNQNALLI 552

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    + +G+     L+   G   T ++             V+ A+
Sbjct: 553 DSTGRSYALASHTLPSS--RGQGEPASGRLNPPSGAVFTGLL------MGVEKQRVLIAS 604

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC--TQENDILLTTKLGQCVRFPI 710
             G     +L +    N++GK  + L     +L         +  +   +  G+ + FP+
Sbjct: 605 DAGYGFVTELGNLYTKNKAGKALLTLPKGARVLPPFMIDDVADAYVAAASNEGRLLIFPL 664

Query: 711 SAIRVFAGRNSVGVR-----GISLAKGDQ-VISMAIVLH 743
           S +   A     G +     G  +   ++ V+S+A++  
Sbjct: 665 SDLPELA--RGKGNKMLSIPGARVEAREEFVVSIAVIHS 701


>gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063]
          Length = 752

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/738 (31%), Positives = 370/738 (50%), Gaps = 62/738 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++ +  IT   + ++    YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +    
Sbjct: 2   KKNKNNITEEQLKNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLTSKS 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            + K AR+ G+V+GK+HPHG+ ++YDAL R+AQD+S +  LI GQGNFG++DGD  AA R
Sbjct: 62  SFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L + + FLL D+G +TV+FR  YDG   EP VL A +PN+L NG  GIAVGMATN
Sbjct: 122 YTETKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGMATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSI 248
           IP HNL E+    + + ++ D  +  L++I++GPDFPTG ++   +  +   Y TGRG  
Sbjct: 182 IPPHNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGRGFF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +R    +E  S  + Q+ +++IPYQVNK+ ++EKIA+L+  K+   I ++ DESD    
Sbjct: 242 ELRAKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESDE-NI 300

Query: 309 RVVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFRE 366
           RVVI    R     V++N LY+ T L+  F +NM  LN   +P+  ++  IL +F+  R 
Sbjct: 301 RVVIRPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKHRY 360

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ +++K+ LNK   R  +L G  IA  NL+ +++IIR S NP   + EL+++      
Sbjct: 361 IILEKKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNP---KAELVKK------ 411

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  +E Q  AIL+++L  L  +   +I+ E + L  + K 
Sbjct: 412 --------------------YRFTENQVNAILDMKLRSLRKIEEKEIKEENSKLLNKKKL 451

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDME---DEDCIVREDM 538
            + +LSS+S     I +E+  +  +         R+T I +         DE+    + +
Sbjct: 452 LMKLLSSKSLQKKEINKEMEDLILQFGNNSAYGLRKTVIEKFNRIESSELDEELKSTDPI 511

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
              +   G++K                         +              +F SS G  
Sbjct: 512 TAILLKTGFLKAKIGYSVCKVNAD----------FSENEHLYVNGRKSDKFIFLSSFGKS 561

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      L  G    +GK   +  SL + E I             NN  ++  + +G   
Sbjct: 562 YTLDGENLVFG--SQKGKPFSSYFSLKENEEIVDSFL------YKNNEKILLCSSNGYGF 613

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                + I   +SGK    +   D +  SV+    +  I L TK  +  R  + +++   
Sbjct: 614 FINSDNLISNKKSGKKVFNIKKNDFLHSSVQIHKDQKYIFLLTKNKKENRASVISMKDIP 673

Query: 718 GRNSVGVRGISLAKGDQV 735
                GV GI L KG +V
Sbjct: 674 T-QEKGV-GIILFKGKKV 689


>gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H]
 gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H]
          Length = 769

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/739 (31%), Positives = 390/739 (52%), Gaps = 67/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+  V +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAL----EYSLDGVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD++PN+DG+ QEP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV D CV +I+NP  ++  L+E ++GPD+PT   +I  +  I
Sbjct: 176 ITGIAVGMATDIPPHNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V  +E+       IV+T +P+Q +   +LE+IA  +  K++  + 
Sbjct: 236 EKIYQTGRGSIRMRAVYDVEQGD-----IVITSLPHQASGGKILEQIAGQMTAKKLPMVV 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  +    +P    L
Sbjct: 291 DLRDESDHENPVRLVIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDNRPAVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R E V RR +Y L+K   R H+L GL +A  N+DEV+ IIR   +P   +
Sbjct: 351 LVILSEWLEYRRETVRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  +ILE++L +L  L    IR
Sbjct: 408 AELMSR--------------------------FALSDTQAHSILEIKLRQLAKLEEIKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L IE      IL+S++R+  ++K+E+L+  ++    RR+++VE        ++D 
Sbjct: 442 AEQDELRIEQDYLEKILNSKARMSTLMKKEILAAAEQYGDDRRSQLVERSESKALTEKDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V VS  G+         R  +      + +  +  D         ++  V+F 
Sbjct: 502 VPSEAVTVVVSDKGWA--------RCAKGHDIDPTSLSYKAGDGYLCASKGRSNRPVVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ L    +L+ G+     +       S ++   +  +
Sbjct: 554 GSDGRAFTTDAHTLPTA--RSQGEPLTGRFNLSTGKTFVHSI------MSDDDAQYLLVS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G    +   D +  N++GK  + L    ++L  +     + ++ L  T  G+ + FP+
Sbjct: 606 DAGYGFVSSFGDMVSRNKNGKALISLPEAAKVLMPQCINNIENDNCLTITSEGRMLVFPV 665

Query: 711 SAIRVFAGRNSVGVRGISL 729
             + V +     G + I++
Sbjct: 666 KNLPVLS--KGKGNKIINI 682


>gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis
           ATCC 33393]
          Length = 750

 Score =  527 bits (1358), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/738 (31%), Positives = 375/738 (50%), Gaps = 68/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I        +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDSI------NYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+V
Sbjct: 55  SELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAV 114

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG
Sbjct: 115 D-DPKSFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNG 173

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+ D  V ++DNP   L+ L+ +++GPDFPT   +I  +  I
Sbjct: 174 TTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEI 233

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGSI +R     E        I+++ +P+Q + + ++ +IAE +  K++  + 
Sbjct: 234 RKIYQQGRGSIKMRAAWKKEDGE-----IIISALPHQASPSKVIAQIAEQMTAKKLPMVE 288

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDE+D +   R+VI  +      D ++  L+  T L+  + VNM  +   YKP    L
Sbjct: 289 DIRDEADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNL 348

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 349 LEILTEWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEP---K 405

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AIL LRL  L  L    ++
Sbjct: 406 AELMAR--------------------------FNLSDAQAEAILNLRLRHLAKLEEHQLQ 439

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E   L  E     +IL S  RL  ++K+E+        +PRR+ +VE      + + + 
Sbjct: 440 AEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEM 499

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R  +       G+  +  D         ++   +F 
Sbjct: 500 LPTEPVTVILSEMGWV--------RCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQPAVFI 551

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    +++G+ L   L+L  G  +  ++          +  ++ A+
Sbjct: 552 DSTGRSYALDPLSLPSA--RSQGEPLTGKLTLPAGATVDQLL------IENEDQPLLMAS 603

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G     K +D +  N++GK  + L    ++L           ++  T  G+ + FP  
Sbjct: 604 DAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFPAQ 663

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +++
Sbjct: 664 DLPELS--KGKGNKIVTI 679


>gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1]
 gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1]
          Length = 738

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 224/737 (30%), Positives = 363/737 (49%), Gaps = 62/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ TVD++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP+   + L E I  PD PT   +I  +  +     TGRGS   R V
Sbjct: 189 LREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRGSYRARAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
            HI     D+ +IV+TE+PYQV+ + ++ +IA+ ++ K++  ++D+RDESD +   R+VI
Sbjct: 249 YHI-----DKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHRNPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A  +++ L+  T L++ + VN+  +    +P+  ++  IL  ++  R+  V 
Sbjct: 304 VLRSNRVDAAAVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRILLEWIEIRKTTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LNK   R H+L GL IA  ++D V++IIR    P+                   
Sbjct: 364 RRLQYHLNKIEKRLHILAGLLIAYLDIDTVIKIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR E   L        + 
Sbjct: 405 ----------PVLMQHFNIDEIQAEAILELKLRHLAKLEEMEIRREQEELEARAAVIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV+      + ++D +  E + V +S  G++
Sbjct: 455 LGNPESLKNLIINELKEDAKKFGDDRRSPIVQREEAVQIREQDLLPAETVTVVLSEAGWI 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           +           +G      +  R  D      I  ++  V      G  Y   +  LP 
Sbjct: 515 R---------SAKGEVDAENLNYRAGDQYQSHAIGKSNQRVYVLDETGRSYALSIGNLPS 565

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+        + F +   +     ++  +  G   + +       
Sbjct: 566 ARGLGE--------PLSSKLSPANGVSFIQVYINDEESELIAVSDAGYGFKTQTKQLDTN 617

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +    + L + T      + + +  G+ +   +S + +       G + I 
Sbjct: 618 AKAGKAFLSVPEGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPILN--KGKGNKLIQ 675

Query: 729 LAKGDQVISMAIVLHAD 745
           L   DQ++SM ++   +
Sbjct: 676 LDDKDQILSMTLLSLNE 692



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 719 RNSVG-VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           R++ G V   +L    GDQ  S AI       Y        +  +   L S         
Sbjct: 515 RSAKGEVDAENLNYRAGDQYQSHAIGKSNQRVYVLDETGRSYALSIGNLPSARGLGEPLS 574

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
              S   G    +    +  +E  ++ VS+ G+G +T +     + ++GK         +
Sbjct: 575 SKLSPANGVSFIQVY--INDEESELIAVSDAGYGFKTQTKQLDTNAKAGK-----AFLSV 627

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            E    + +  + D   + ++S  G L+ V ++E+ I ++  KG  +      ++++S+ 
Sbjct: 628 PEGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPILNK-GKGNKLIQLDDKDQILSMT 686

Query: 896 RIRESEIV 903
            +  +EI+
Sbjct: 687 LLSLNEII 694


>gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
 gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47]
          Length = 813

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 233/782 (29%), Positives = 372/782 (47%), Gaps = 71/782 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
             +YL YAI+V+ GRA+PD+ DG+KPV RRIL+ M ++G+  + K VK AR+ GEV+GKY
Sbjct: 51  SRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAMKRLGLNPDVKTVKSARVVGEVLGKY 110

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A YDA+ R+AQD+++R  L++GQGNFGS DGD  AA RYTE RL K A  LL +
Sbjct: 111 HPHGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSADGDGAAAMRYTEVRLSKYADLLLGE 170

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L K TV F PNYDG+ +EPV+L AR P +L+NG  GIAVGMAT IP+HNL EV +  + V
Sbjct: 171 LDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSSGIAVGMATEIPSHNLTEVGEAAIEV 230

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           I NP+I  D L+EI++GPDFP GA ++   + IKN Y +G G++ +R   H E+ S  + 
Sbjct: 231 IRNPEITTDELLEIVKGPDFPGGAQVISSASDIKNVYRSGYGNLQVRATYHFEELSRGQW 290

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVD------------------IADLRDESDRQ 306
           Q+V   +PY+V+   ++ ++  L   K                      ++ +RDES  +
Sbjct: 291 QLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSLTAKQQQDKQLIMNVMSGMRDESSAE 350

Query: 307 G-YRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+VI+ K +    + +++ +   TSL++    N+V +    KP +  L  IL  +V+
Sbjct: 351 APVRLVIDPKSKSIDREELVSTILSKTSLETSCKFNLVVIGIDGKPRQKGLKDILSEWVS 410

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V  R++  LN+A  R H L G  I + +++EV+RIIR + +P+            
Sbjct: 411 FRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIEEVIRIIRGTDDPKK----------- 459

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q   ILE++L +L  L    +R EL  L  E
Sbjct: 460 ------------------ELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNE 501

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
            +    +L+   +L   + +E+    D     RRT I E          ++ E + V VS
Sbjct: 502 AERLRGLLTDEKKLRREVTKEIRQDIDTYGDERRTLIEEAKGA-SIAKQVIDEPVTVIVS 560

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+++  G     +  +  D         +  ++   S+ G +Y   V
Sbjct: 561 EKGFL--------RSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPV 612

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +  G  +   +    G+         +      +  ++F +        K+S
Sbjct: 613 SSLPSA--RGEGTHVSAFVQFQDGDVP------FDYICGAPDTVLLFTSDAAMGFFCKMS 664

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D   + + G  +  +    + L V+  T     I   +  G+ V F    +R  +     
Sbjct: 665 DL-AVRQRGGKSFFILDGAKPLPVQVSTPLTGWIAALSSSGRLVVFTTDELRALSS-GGK 722

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G   ++L   +++++   +         +    K         S +       +    VE
Sbjct: 723 GTTIMALQDDEKLVAAVPISPNGVVVVGKGRGGKIQELLVGPRSIEDYRTRRGRKGRFVE 782

Query: 783 GN 784
             
Sbjct: 783 AK 784


>gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999]
          Length = 788

 Score =  527 bits (1357), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/749 (30%), Positives = 384/749 (51%), Gaps = 69/749 (9%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            + G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M  +G+  N KY
Sbjct: 8   NQDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLGLSANAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ ++ R  L++GQGN+G+ D DP   AA R
Sbjct: 68  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPD-DPKSFAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL + +  LL +LG+ T D+ PN+DG+ +EP VL AR P++L+NG  GIAVGMAT+
Sbjct: 127 YTEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIAVGMATD 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ E+ + C  ++DN   +L  L+E ++GPD+PT   +I  +  I+  Y TGRGSI
Sbjct: 187 IPPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYETGRGSI 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG- 307
            +R V   E        +++T +P+Q +   +LE+IA  ++ K++  ++DLRDESD +  
Sbjct: 247 KMRAVYTEENGE-----VIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDESDHENP 301

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+V+  +      + ++  L+  T L+  + VN+  +    +P+   L  IL  ++ FR
Sbjct: 302 TRLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDGRPQVKDLKSILSEWLVFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   ++ELM R     
Sbjct: 362 RDTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEP---KQELMAR----- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS+ Q  AILEL+L  L  L    I+ E + L  E  
Sbjct: 414 ---------------------FGLSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERD 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVS 543
                L S  R+  +IK+EL++  ++    RR+ IV+        +++ +  E + V +S
Sbjct: 453 ALQLTLGSDRRMKTLIKKELMADAEKYGDDRRSPIVQRGESKALSEKELVPSEPVTVVIS 512

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+         R  +        +  + +D         ++   +FF S G  +    
Sbjct: 513 AKGWA--------RCAKGHDVDAPNLSYKGDDSYLASAKGRSNQPAVFFDSSGRTFSCDA 564

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +++G+ L    ++  GE+   ++       +  +   + A+  G       +
Sbjct: 565 HTLPSA--RSQGEPLTGRFNMVSGEQFEHVI------MANESQKFLMASDAGYGFVGSFA 616

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           D +  N++GK  + L S  ++L+         +  L  +  G+ + FP+  +        
Sbjct: 617 DMLSKNKAGKAYLSLPSAAKVLTPVLVNDIETDRCLAISNEGRMLLFPLRDLPSLG--KG 674

Query: 722 VGVRGISLAK------GDQVISMAIVLHA 744
            G + I++         + ++++AIV + 
Sbjct: 675 KGNKIINIPSAKAKTREEFIVALAIVPNG 703


>gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
 gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B]
          Length = 756

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 232/737 (31%), Positives = 373/737 (50%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLNAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  E+   C+ +IDNP  +L  LME++ GPD+PT   +I     I
Sbjct: 176 VTGIAVGMATDIPPHNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        +V++ +P+Q + + +LE+IA  ++ K++  + 
Sbjct: 236 AKIYESGRGSIRMRAVYEMENGE-----VVISALPHQASSSKILEQIAAQMQAKKLPMVT 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      + ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPVRLVLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDGRPKVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR E V RR ++ L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KDMLAEWLVFRTETVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AILEL+L  L  L    I+
Sbjct: 408 AELMAR--------------------------FGLSDRQAEAILELKLRHLAKLEEMKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   IL S  RL  +IK+EL    +     RR+ +V         +++ 
Sbjct: 442 AEQSELEEERNKLEQILGSERRLKTLIKKELEKDAETYGDDRRSPLVVRGESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +        +  +  D         ++   +F 
Sbjct: 502 LPTEPVTVVLSEKGWV--------RCAKGHDIDAGALSYKAGDGFLCAAQGRSNQQSVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L  GE +  ++            + + A+
Sbjct: 554 DSSGRAFSTDTHTLPSA--RSQGEPITTRFNLAPGETMEHVLL------GEEQHHYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D I  N++GK  + L S  + L+     ++ +  IL  T  G+ + F +
Sbjct: 606 DAGYGFVCSFADMISRNKAGKALLSLPSGAKALAPRRVDKDANPSILAITNEGRMLVFGL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   A     G + I
Sbjct: 666 DALPQLA--KGKGNKII 680


>gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700]
 gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus
           NJ8700]
          Length = 750

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 236/738 (31%), Positives = 375/738 (50%), Gaps = 68/738 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I        +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDSI------NYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+V
Sbjct: 55  SELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAV 114

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+ +EP  L AR P++L+NG
Sbjct: 115 D-DPKSFAAMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNG 173

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+ D  V ++DNP   LD L+ +++GPDFPT   +I  +  I
Sbjct: 174 TTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEI 233

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  GRGSI +R     E        I+++ +P+Q + + ++ +IAE +  K++  + 
Sbjct: 234 HKIYQQGRGSIKMRAAWKKEDGE-----IIISALPHQASPSKVIAQIAEQMTAKKLPMVE 288

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDE+D +   R+VI  +      D ++  L+  T L+  + VNM  +   YKP    L
Sbjct: 289 DIRDEADHENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNL 348

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 349 LEILTEWLTFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEP---K 405

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AIL LRL  L  L    ++
Sbjct: 406 AELMAR--------------------------FNLSDAQAEAILNLRLRHLAKLEEHQLQ 439

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E   L  E     +IL S  RL  ++K+E+        +PRR+ +VE      + + + 
Sbjct: 440 AEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKTYASPRRSPLVERAEAKAIAENEM 499

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S +G+V        R  +       G+  +  D         ++   +F 
Sbjct: 500 LPTEPVTVILSEMGWV--------RCAKGHDIDPQGLNYKAGDKYLAHAYGKSNQPAVFI 551

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    +++G+ L   L+L  G  I  ++          +  ++ A+
Sbjct: 552 DSTGRSYALDPLSLPSA--RSQGEPLTGKLTLPAGATIDQLL------IENEDQPLLMAS 603

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPIS 711
             G     K +D +  N++GK  + L    ++L           ++  T  G+ + FP+ 
Sbjct: 604 DAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVALTSAGRMLIFPVQ 663

Query: 712 AIRVFAGRNSVGVRGISL 729
            +   +     G + +++
Sbjct: 664 DLPELS--KGKGNKIVTI 679


>gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
 gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320]
 gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906]
          Length = 985

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 242/780 (31%), Positives = 383/780 (49%), Gaps = 65/780 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + 
Sbjct: 3   ELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG  TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN  E+      ++DNPD  L  +M+ ++GPD+PT   VI     IK  Y TGRG
Sbjct: 182 TDIPPHNAREIGQALTMLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R V   E+        V+T +P+QV+ A +LE+IA L+R K++  + DLRDESD +
Sbjct: 242 SIRMRAVWQKEEG-----CAVITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+VI  +      + ++  L+  T L+  + VN+  +    +P    L+ IL  ++ 
Sbjct: 297 NPTRLVIVPRSNRVDLEQVMYYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLV 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R + V  R  + L K   R  +L GL IA  N+DEV+ IIR+   P   + ELM+R   
Sbjct: 357 YRRQTVTNRLNHRLEKVLRRLEILKGLLIAYLNIDEVIEIIRYEDEP---KAELMRR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS++Q  AILELRL  L  L    ++ E + L  E
Sbjct: 411 -----------------------FALSDIQAEAILELRLRHLAKLEEIKLQAESDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVT 541
                 +L+S  RL  ++K+E+ +   E    RR+ I          ++D +  E + + 
Sbjct: 448 RDSIEKLLNSPRRLNTLLKKEIEADAKEFGDERRSPIRPQEEAKVVNEQDMLPSEPVTIV 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R+ +      S +  R  D         ++  VLF  S G  Y  
Sbjct: 508 LSEMGWV--------RSAKGHEIDPSTMSYRAGDSYHSAVRGMSNQPVLFLDSTGRSYSL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +P G  +++G+ L   L+      +  ++              + ATK G      
Sbjct: 560 SPNDMPSG--RSQGEPLTGKLTFPPDASVKYMLA------GAAKQEYLLATKEGYGSVLS 611

Query: 662 LSDFIQINRSGKIAMKLDSRDE-----ILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
             +    N++GK  + +    E     ++  E    ++ +++ T   + +      +   
Sbjct: 612 YEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHWLVIITDKTRILAISAEHLNEM 671

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             +   G R ++L K    +   IVL A  +        +  + +   IS  + ++    
Sbjct: 672 N-KKGRGTRLVALGKEQSDVIEQIVLIAKNEALTFTVDGQQQTLKAEEISYFSGDVGDEP 730


>gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185]
 gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195]
 gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155]
 gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185]
 gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195]
 gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183]
 gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175]
 gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678]
          Length = 758

 Score =  527 bits (1356), Expect = e-147,   Method: Composition-based stats.
 Identities = 234/737 (31%), Positives = 377/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  S      G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAIKLSL----DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V  CVA++D+P ++L+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGS+  R V  +     D  +I++T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYESGRGSLRARAVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KTLLTEWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  +ILEL+L  L  L    I 
Sbjct: 408 AELMAR--------------------------FSLSDKQAESILELKLRHLAKLEEFKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV         +++ 
Sbjct: 442 AEQNELEAEREKLEQLLGSERRLKTLIKKELIQDAETYGDDRRSPIVLRNESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      I  ++ + +F 
Sbjct: 502 TPTEAVTVVLSEKGWV--------RCAKGHDIDPLSLSYKSGDQYLCSAIGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++          +   + AT
Sbjct: 554 DSSGRAFATDSHTLPSA--RSQGEPITTRFNMAPGETMQHVL------MGEEDQCYLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L+ +   +  +  +L  T  G+ + F +
Sbjct: 606 DAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|256370589|ref|YP_003108414.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
 gi|256009381|gb|ACU52741.1| putative partial DNA gyrase A subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 519

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 211/520 (40%), Positives = 326/520 (62%), Gaps = 29/520 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I S+++ +E++ SY+ Y+++VI+ RA+PD +DGLKPV RR+L+GM + G    K Y K
Sbjct: 2   EKIISINLEEEIKASYIDYSMSVIVSRALPDGKDGLKPVQRRVLYGMYEQGAF--KNYRK 59

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+V+GKYHPHG++++Y+A+ RMAQ WSLR  LI+GQGNFGS+D DPPAA RYTE 
Sbjct: 60  SARIVGDVLGKYHPHGDSSVYEAIVRMAQSWSLRYPLIDGQGNFGSIDNDPPAAMRYTEI 119

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +LQK +  +L DL KDTVD + N+D S +EP+VL    PN+L+NG  GIAVG+ATN+P H
Sbjct: 120 KLQKVSEEMLFDLKKDTVDIKLNFDSSCKEPIVLPTVIPNLLINGSSGIAVGIATNMPPH 179

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ E ++   + I+N DI ++ LM+ I  PDFPTG +I G  G+K A+ TGRG I++R  
Sbjct: 180 NIVESINAICSYIENTDISIEELMKDIIAPDFPTGGIIYGYEGVKKAFLTGRGKILLRSK 239

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
              EK       +++ EIPYQ+ K  +++K  +L++E+++  I+ +RDESDR G R+V  
Sbjct: 240 VFFEKIG-GCYCLIIKEIPYQIRKEDLIKKTLKLIKEEKLEGISKIRDESDRTGMRIVFY 298

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+  +  ++L  +++YT L++ FSVN +AL   KP +  L  I+K FV  R EV++RR+
Sbjct: 299 LKKNVNKHLLLKNIFKYTPLETTFSVNNIALVNGKPVQLNLKDIIKHFVNHRHEVLIRRS 358

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           K+ L  A+++AH++ G  + + N++ V+ +I+ S     A+++L+ +             
Sbjct: 359 KFDLKNAKEKAHIIKGFYLVLDNIETVIELIKSSKEKNHAKKKLLIK------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q +AIL L+L  LT L  + I+ +   L  +I    +I + 
Sbjct: 406 -------------FNLSEKQVKAILNLKLNSLTKLENEKIKKDYLKLKKDISYYTNIKTD 452

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI 533
                 IIK+EL  +K++    RRT+I    +     D +
Sbjct: 453 IFFQKKIIKKELKQIKEKYGDLRRTQIDYLGIKSSLYDVM 492


>gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
 gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans
           ATCC 33394]
          Length = 761

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 228/755 (30%), Positives = 364/755 (48%), Gaps = 76/755 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+ GRA+P ++DG KPV RRIL+ M  MG+  N K VK AR+ 
Sbjct: 8   LDLAAYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSARVV 67

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+A+ RMAQ+++LR  LI+G GNFGS DGD  AA RYTE RL   
Sbjct: 68  GEILGKYHPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLSPI 127

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDG+ +EPV+L AR P VL+NG  GIAVGMAT IP+HNL E+
Sbjct: 128 ADLLLSEIQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLTEI 187

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
               +A++ NP+++   LM  +  PDF  G  I+     ++  Y TG+GS+ +R    I+
Sbjct: 188 TQAAIALLKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYEID 247

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           K +  + +++V+E+P   + A +L +I E    K                         +
Sbjct: 248 KMARGQWRVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIEKV 307

Query: 300 RDESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RD+SD     R++ E K         +N L   T L+   SVN+V +    +P +  L  
Sbjct: 308 RDDSDGEHPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNLKT 367

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ +R   V RR ++ LN    R H+L G  IA  ++DEV+R+IR +  P+     
Sbjct: 368 ILQEWLDYRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKA---- 423

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           LSE+Q   ILE+RL +L  L    + NE
Sbjct: 424 -------------------------DLMANFSLSEIQAEDILEIRLRQLARLEGIKLENE 458

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           LN L  E      +L   +     I +E+ +   +    RRT +               E
Sbjct: 459 LNELREEQSSLHTLLGDENAKKKHIIKEMQADAKQFGDARRTLVEA-AERATLTQTTADE 517

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+       +  V ++ D +  +    T   V+     G
Sbjct: 518 PVTLILSQKGWI--------RARSGHDVDIAQTVFKEGDGLQQILPARTVQPVIVLDDSG 569

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G     G  L +++ +    +I +++          + Y++  +  G 
Sbjct: 570 RSYTINPADIPKGRGD--GVPLASLIDMPANAQIVSMLT-----GEPEDHYLLANS-GGY 621

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPI 710
               KL       ++GK  M LD+ + +L             +  I+L T   + + FP+
Sbjct: 622 GFICKLEHLHSRLKAGKTVMTLDNGETVLPPVCVHLSSLINPDCKIMLATAHNRLLAFPL 681

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
             +++ A     G++ ISL +GD+V  + ++  AD
Sbjct: 682 GEMKIMA--KGRGLQMISLQEGDRVQRLNVLSSAD 714


>gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE
           PC73]
 gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas
           albilineans]
          Length = 747

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 244/760 (32%), Positives = 381/760 (50%), Gaps = 71/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTD----LPRPVFHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +LG+ TVD+ PN+DG+  EP  + AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E +RGPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  YATG GS+  R     E  +     IVVT +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RTIYATGHGSVRARATYEKENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + +N+  +    +P+   L
Sbjct: 291 DIRDESDHANPVRVVLVPRSNRVDAEHLMGHLFATTDLERSYRINLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ ++ FR + VVRR  + L K   R H+L GL +A  NLDEV+RIIR    P+ A 
Sbjct: 351 KTLLEEWLRFRSDTVVRRLNHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE QT  ILE RL +L  L    IR
Sbjct: 410 ----------------------------LIARFALSEEQTDYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
            E ++L  E ++   +L+S+++L  +IK EL++   +    RR+ +V+      +++ + 
Sbjct: 442 GEQDALAKEREQLQAVLASKTKLKKLIKDELIADAKKFGDARRSPLVQREAAQAIDETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M + +S  G++        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VPSEPMTIVMSEKGWI--------RAAKSHDVDPAGLAYRDGDSLLAAVRGRSTQQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP            N   L           F    +  N+  VV A+
Sbjct: 554 DSEGRAYSTLAHTLPSARG--------NGEPLTGRFSPAAGAAFQALATGENDTRVVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L    ++L+  T      + I+  T  G  + FP+
Sbjct: 606 SHGYGFITRFENLTSRNKAGKAMLNLTPNAKVLAPATVGNADTDRIVAVTSAGHLLAFPV 665

Query: 711 SAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHADA 746
           + +         G + I + K     ++V+++A V   + 
Sbjct: 666 ADLPELD--KGKGNKIIDIPKAKLGTERVVAIAAVTPGNT 703



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 14/174 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD +++   V          +       +                         +  +
Sbjct: 533 RDGDSLLAA--VRGRSTQQVAFLDSEGRAYSTLAHTLPSARGNGEPLTGRFSPAAGAAFQ 590

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN- 848
                  +  ++  S  G+G  T   +    N++GK +             ++A   V  
Sbjct: 591 ALATGENDTRVVLASSHGYGFITRFENLTSRNKAGKAMLNLT-----PNAKVLAPATVGN 645

Query: 849 -DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----DERVVSVERI 897
            D D+I+ V+  G L+  PV ++    +  KG  I    K     ERVV++  +
Sbjct: 646 ADTDRIVAVTSAGHLLAFPVADLPELDK-GKGNKIIDIPKAKLGTERVVAIAAV 698


>gi|260656380|pdb|3ILW|A Chain A, Structure Of Dna Gyrase Subunit A N-Terminal Domain
 gi|260656381|pdb|3ILW|B Chain B, Structure Of Dna Gyrase Subunit A N-Terminal Domain
          Length = 470

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 222/491 (45%), Positives = 307/491 (62%), Gaps = 31/491 (6%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY
Sbjct: 4   SVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIY 63

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D+L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +L ++ ++TVDF 
Sbjct: 64  DSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFI 123

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA----VIDNPD 210
           PNYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HNL E+ D           + +
Sbjct: 124 PNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELADAVFWALENHDADEE 183

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             L A+M  ++GPDFPT  +I+G  G  +AY TGRGSI +RGV  +E+ S  R  +V+TE
Sbjct: 184 ETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEEDSRGRTSLVITE 243

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYR 329
           +PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R+VIE+KR A A V++N LY+
Sbjct: 244 LPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYK 303

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           +T LQ+ F  NM+A+    P    L  +++ +V  + +V+VRRT Y L KA +RAH+L G
Sbjct: 304 HTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRG 363

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L  A+  LDEV+ +IR S   + AR  L++                           + +
Sbjct: 364 LVKALDALDEVIALIRASETVDIARAGLIE--------------------------LLDI 397

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
            E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL  + 
Sbjct: 398 DEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIV 457

Query: 510 DELDTPRRTRI 520
           D     RRTRI
Sbjct: 458 DRHGDDRRTRI 468


>gi|156181152|gb|ABU54855.1| GyrA [Bacillus licheniformis]
          Length = 341

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 201/340 (59%), Positives = 267/340 (78%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+A+ RMAQD++ R  L++G GNFGSVDGD  AA RYTE R+ K +  
Sbjct: 61  IGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG
Sbjct: 121 ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV  NPDI L  L+EII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS 
Sbjct: 181 VLAVSKNPDITLPELVEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+RGA+A+
Sbjct: 241 GKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRGANAN 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           V+LN LY+ T+LQ+ F +N++AL   +P+  +L   L+ +
Sbjct: 301 VLLNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHY 340


>gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223]
 gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223]
          Length = 758

 Score =  526 bits (1355), Expect = e-147,   Method: Composition-based stats.
 Identities = 235/737 (31%), Positives = 377/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I  S      G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAIKLSL----DGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TV++  N+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+V  CVA++D+P +DL+ LM  + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDIPPHNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGS+  R V  +     D  +I++T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYESGRGSLRARAVYTV-----DGGEIIITALPHQASSGKILEQIAGQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P    L
Sbjct: 291 DLRDESDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR +Y L+K   R H+L  L IA  N+DEV+ IIRF   P   +
Sbjct: 351 KTLLTEWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  +ILEL+L  L  L    I 
Sbjct: 408 AELMAR--------------------------FSLSDKQAESILELKLRHLAKLEEFKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E N L  E ++   +L S  RL  +IK+EL+   +     RR+ IV         +++ 
Sbjct: 442 AEQNELEAEREKLEQLLGSERRLKTLIKKELIQDAETYGDDRRSPIVLRNESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      I  ++ + +F 
Sbjct: 502 TPTEAVTVVLSEKGWV--------RCAKGHDIDPLSLSYKSGDQYLCSAIGRSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    ++  GE +  ++          +   + AT
Sbjct: 554 DSSGRAFATDSHTLPSA--RSQGEPITTRFNMAPGETMQHVL------MGEEDQCYLLAT 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D +  N++GK  + L +  + L+ +   +  +  +L  T  G+ + F +
Sbjct: 606 DAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEMSLLAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
 gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147]
          Length = 765

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 229/746 (30%), Positives = 353/746 (47%), Gaps = 76/746 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +++    + +YL YA++V+ GRA+P ++DG KPV RRILF M  MG+    K VK AR+ 
Sbjct: 14  LNLAQYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLTHGAKPVKSARVV 73

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   
Sbjct: 74  GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPL 133

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++ + TVDF PNYDG+F+EP  L AR P VL+NG  GIAVGMAT IP+HNLGEV
Sbjct: 134 AELLLSEINQGTVDFIPNYDGAFEEPESLPARLPMVLLNGASGIAVGMATEIPSHNLGEV 193

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIE 257
               VA++ NP +    L   I  PDF  GA I+     I   Y TG+GSI +R    +E
Sbjct: 194 AQAAVALLKNPALTTADLHHHIPAPDFAGGAHIITPAKDIAQIYETGKGSIRVRARYDVE 253

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR----------------- 300
           K +  + ++VV+E+P   + A +L +I E    K       L                  
Sbjct: 254 KLARGQWRVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLLEKV 313

Query: 301 -DESD-RQGYRVVIELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
            DESD     R+V E K      +  +N L   TS++   SVN+V +    +P +  L  
Sbjct: 314 RDESDGEHPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVSVNLVMMGLDNRPAQKNLKT 373

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ ++ +R   V RR ++ L+    R H+L G  IA  ++D+V+++IR +  P+     
Sbjct: 374 ILQEWLDYRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHIDQVIKVIREADEPK----- 428

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E+Q   ILE+RL +L  L    I  E
Sbjct: 429 ------------------------PELMAAFQLTEIQAEDILEIRLRQLARLEGIKIERE 464

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           LN L  E      +L   +    +I +E+ +   +    RRT +               E
Sbjct: 465 LNELREEAGSLKTLLGDENEKRKLIIKEIQADAKQFGDARRTLVE-AAERATLTQTTADE 523

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+   G   + +  ++ D +  +    T   V+ + S G
Sbjct: 524 PITLILSQQGWL--------RARAGHGVDAAQIAFKEGDALQQVLETRTVQPVVVWDSHG 575

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G            + +     + +        +   + Y + +  HG 
Sbjct: 576 RSYTLDAAEIPKGRGDG--------VPIASLIELPSQASVVALLAGAADDYYLLSGCHGY 627

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPI 710
               KL D     ++GK  + LD  +  L             ++ I+L +   + + FP+
Sbjct: 628 GFIAKLEDLFTRQKAGKAVLTLDDNETALPPVRIANDWLIAPDSRIVLASANKRLLAFPV 687

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVI 736
           S +++ A     G++ I L+ GD + 
Sbjct: 688 SEMKIMA--KGRGLQLIKLSDGDTLA 711


>gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium
           EB80_02D08]
          Length = 752

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 238/727 (32%), Positives = 394/727 (54%), Gaps = 62/727 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           E++ I S+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY
Sbjct: 3   EQEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKY 62

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG+ A Y+A+  MAQ++S +  L++GQGN+GS D DP   AA R
Sbjct: 63  KKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQD-DPKSFAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L K A+ L+ +L   TVD++PN+DGS  EPV+  ++ P++L+NG  GIAVGMAT+
Sbjct: 122 YTESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMATD 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP+HN+ EV+D  V +++NP  +L  L++I++GPDF     +I+    ++  Y+TGRG  
Sbjct: 182 IPSHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGGF 241

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QG 307
             +          D+ QI++  +PYQ + + +LE+IA+ + +K+I  + DL DE D  + 
Sbjct: 242 KAQAFW-----QQDKNQIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKEP 296

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+VI LK    +A+ ++N L+  T LQ  + VNM  ++    P+ F+LI +LK ++ FR
Sbjct: 297 VRLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLIDLLKEWLVFR 356

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +  V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+              
Sbjct: 357 KNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK------------- 403

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LS++Q  AILE+RL +L  L +  +  E ++L  E  
Sbjct: 404 ----------------DIIKAFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLLAEQT 447

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVS 543
           +   ILSS++RL  +IK ELL +K+     R++ I E        +E+ +V E + V +S
Sbjct: 448 DIEKILSSKTRLKTLIKNELLEIKEVFGEERKSPIKELSGAKVFSEEETLVTEPVTVVLS 507

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+ +      S +  R ED + D     ++   +F  S G  Y    
Sbjct: 508 AAGWI--------RSAKGHDIDPSSLSYRGEDTLQDFRRGKSNQVSVFLDSNGKAYSLPT 559

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +  G  +   +S + G +  + +   +     ++ +++  T  G    ++  
Sbjct: 560 HSLPSA--RGMGDPISGRVSADSGVKFISTLIGND-----DDKFMIMNTA-GYGYISEFK 611

Query: 664 DFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + I   +SGK  MK+    E+L   +       I   + +G+ + F I  + V       
Sbjct: 612 NMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIGRLLIFNIDELPVLG--KGK 669

Query: 723 GVRGISL 729
           G + I++
Sbjct: 670 GNKIINI 676


>gi|313638150|gb|EFS03408.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 507

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 215/531 (40%), Positives = 330/531 (62%), Gaps = 28/531 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+                
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK---------------- 406

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                     +    T   SE Q  AI+ L+L RLT     ++++   SL  +I     I
Sbjct: 407 ----------LNLQTTYDFSEKQAEAIVSLQLYRLTNTDIHELQSXXKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMV 539
           L   + L+ ++K EL  +K +  TPRRT +      + ++ E  +  ED++
Sbjct: 457 LGDEAELVAVLKAELSEIKKKYKTPRRTEVQAEIAEIKIDTEVLVANEDVI 507


>gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
 gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145]
          Length = 760

 Score =  526 bits (1354), Expect = e-147,   Method: Composition-based stats.
 Identities = 230/746 (30%), Positives = 394/746 (52%), Gaps = 69/746 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               ++   +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR
Sbjct: 7   ERTPLSKFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAKYKKSAR 66

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+GS D DP   AA RYTE +
Sbjct: 67  TVGDVLGKFHPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPD-DPKSFAAMRYTEAK 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ TVD+ PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN
Sbjct: 126 LSHFSEVLLSELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATDIPPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
             EV + C  +ID P  DLD +ME ++GPD+PT   +I  +  +K  Y +GRG+I +R  
Sbjct: 186 AREVANACALLIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTIKMRAK 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
            H+E+       IV+T +P+Q + A +LE+IA  ++ K++  ++DLRDESD +   R+V+
Sbjct: 246 YHLEENE-----IVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENPTRLVV 300

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++  L+  T L+  + VN+  L    +P+   L+GIL  ++ FR++ V 
Sbjct: 301 VPRSNRVDTEQLMKHLFATTDLEKQYRVNLNILGLDGRPQVKPLVGILGEWLEFRKQTVT 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L+K   R H+L GL IA  N+DEV+ IIR+   P   ++EL++R          
Sbjct: 361 RRLQYRLDKVEARLHILQGLLIAFLNIDEVIEIIRYEDEP---KKELIKR---------- 407

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q  AILEL+L  L  L    ++ E   L  E ++   +
Sbjct: 408 ----------------FALTDTQAEAILELKLRHLARLEEMKLKGEQEELEKEREKLSQL 451

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L+S  RL  +IK+E+L+  ++    RR+ +VE        + +    E + V +S  G+V
Sbjct: 452 LNSDRRLKTLIKKEILADAEKYGDERRSPLVERAEAKALSETELTPAEAVTVVLSAKGWV 511

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  +        +  +  D         ++  V+F  + G  Y  +   LP 
Sbjct: 512 --------RCAKGHDVDGEKLSYKSGDSFQAAAQGKSNLPVVFLDTSGRSYSCEAHSLPS 563

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +++G+ L    ++  GE +   +       + +  Y + ++  G     +  D +  
Sbjct: 564 A--RSQGEPLTGRFNMVAGEMVQHAL------MARDEQYYLLSSDAGYGFVCQFKDLVSR 615

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N++GK  + L +  +++         +  +++ +  G+ + FPI+ +   A     G + 
Sbjct: 616 NKNGKAILTLPTGAKVMPPVEVKDTAQAQVIVVSNEGRMLVFPIADLPQLA--KGKGNKM 673

Query: 727 ISL------AKGDQVISMAIVLHADA 746
           IS+      ++ + V+++++      
Sbjct: 674 ISIPTLRAQSREEYVVAVSVASPEST 699


>gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
 gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707]
 gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27]
          Length = 747

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/750 (32%), Positives = 376/750 (50%), Gaps = 69/750 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +    + +  + +YL Y++ VIL RA+P L DGLKPV RRI++ M ++G+    KY 
Sbjct: 6   NPDVEERPLGEFAEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAGAKYK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+GS D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  LL ++G+ TV++ PN+DG+ QEP +L AR P+VL+NG  GIAVGMAT+I
Sbjct: 125 TEARLAPFAELLLSEVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV   C+ ++  P+  +  L E + GPD+PT   +I     +   Y TG+GS+ 
Sbjct: 185 PPHNLHEVTAACLHLLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R    +E+ +     IVV  +P+QV+ A +LE+IA+ ++ K++  +ADLRDESD +   
Sbjct: 245 LRAQYMVEQGN-----IVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPT 299

Query: 309 RVVIEL-KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+V+    R    + +++ L+  T L+  + VN+  +    +P+   L  +L  +  FR 
Sbjct: 300 RLVLVPYARRMDVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLGEWFYFRI 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E + RR +Y L K  DR  VL GL IA  N+DEV+ IIR    P+               
Sbjct: 360 ETLRRRFRYRLEKVEDRLQVLAGLLIAYLNIDEVIAIIRDEEAPK--------------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS+ Q  AILEL+L  L  L    IR E  +L  E K 
Sbjct: 405 --------------PVLMARFKLSDRQAEAILELKLRYLARLEETKIRAENKALAAERKG 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSH 544
              +L S SR+  +++QELL+   +    RR+ IVE       + +  +  E + V +S 
Sbjct: 451 LEKMLGSESRIKDLLRQELLADAKKFGDARRSPIVERSSATVLDKQSLLPAELITVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G+V        RA +      + +  R  D         ++ S +F  S G  Y     
Sbjct: 511 KGWV--------RAAKSQDVNPAALSYRTGDSYRASARGRSNQSAIFLDSTGRSYTLPAH 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    + +G+ L   L +  G     I+       +    + + A+  G     +   
Sbjct: 563 GLPSA--RGQGEPLSGHLQVAPGAEFIAILL------AEPEEFYLMASNAGYGFLCQARH 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSV 722
               NR+GK  + + +  + L     T    + + + T +G+ + FP+  +  F  R   
Sbjct: 615 LYTKNRAGKAVLNVSAGAKALPPVPVTDRELDQVAVATNVGRLLLFPLRDL-PFIARG-K 672

Query: 723 GVRGI-----SLAKGDQVI-SMAIVLHADA 746
           GV+ I      LA+G + + ++A+V    A
Sbjct: 673 GVKLINISSTRLAQGQEAVRALAVVSQGGA 702



 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN-- 850
           L   E+F L  S  G+G    +      NR+GK +   +VS   +    V   PV D   
Sbjct: 591 LAEPEEFYLMASNAGYGFLCQARHLYTKNRAGKAV--LNVSAGAKALPPV---PVTDREL 645

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD------ERVVSVERIR 898
           DQ+ + ++ G L+  P+ ++   +R  KGV + + +        E V ++  + 
Sbjct: 646 DQVAVATNVGRLLLFPLRDLPFIAR-GKGVKLINISSTRLAQGQEAVRALAVVS 698


>gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 761

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 238/817 (29%), Positives = 398/817 (48%), Gaps = 73/817 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDEIII----NRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SDLGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L + A  LL++LG+ TVD+ PN+DG+ +EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEAKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+ + C  ++DN   +L  ++  + GPD+PT   +I  +  I
Sbjct: 176 VTGIAVGMATDIPPHNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V   E        +V+T +P+Q + A +LE+IA  ++ K++  ++
Sbjct: 236 QKLYETGRGSIKMRAVYSEESGD-----VVITALPHQASGAKILEQIAAQMQAKKLPMVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +        ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPTRLVITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ +R++ V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 351 RTILTEWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AILEL+L  L  L    I+
Sbjct: 408 PELMSR--------------------------FGLSDKQAEAILELKLRHLAKLEEMKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S  RL  +IK+E+L+  ++    RR+ IVE        +++ 
Sbjct: 442 GEQDELAAERDKLQQLLGSDRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+         R  +       G+  +  D         ++   +F 
Sbjct: 502 VPAESVTVVLSEKGWA--------RCAKGHDIDAEGLSYKAGDGYLSSAEGKSNQPAVFM 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ L    S+  GE     +       + ++   +  +
Sbjct: 554 DSSGRTFSCDAHGLPSA--RSQGEPLTGRFSIVGGESFQHAI------MAQDDSKFLVGS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  +++     T    +  L  +  G+ + FP+
Sbjct: 606 DAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDTDWCLSISNEGRMLMFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
             +         G + I++      ++ + V  + +V    A           +SA+   
Sbjct: 666 RDLPSLG--KGKGNKLINIPSAKSQSREEYVKILTVVPDGTAIKVGAGKRNMTLSAEDLT 723

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
                      K    ++   + E     K +   +L
Sbjct: 724 HYQGERGRRGNKLPRGLQRVDTVEVVVADKDEAPEVL 760


>gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 764

 Score =  525 bits (1353), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/813 (30%), Positives = 388/813 (47%), Gaps = 72/813 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    E    G+    +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----ELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ +EPVVL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN  EV   C  ++DNP+  LDALM  I+GPD+PT   +I  R  I
Sbjct: 176 ITGIAVGMATDIPPHNAREVAYACAELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG+GSI  R V + E        IV+T +P+Q + A ++E+IA  +  K++  + 
Sbjct: 236 RKIYETGKGSIKQRAVWNEEDGD-----IVITALPHQASGAKIMEQIAAQMVAKKLPMVT 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T L+  + VN+  L    +P+  TL
Sbjct: 291 DLRDESDHENPTRLVIIPRSNRVDMEALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V RR +Y L+K   R H+L GL +A  N+DEV+ IIR    P    
Sbjct: 351 KMILSEWIIFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEP---- 406

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    +R
Sbjct: 407 -------------------------GKVMVERFNISETQAEAILELKLRHLAKLEEFKLR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L IE  +   +L S  RL  ++K+ELL+  ++    RRT +VE    +   +++ 
Sbjct: 442 AEQDELAIERDKLELLLGSERRLNTLLKKELLADAEKYGDDRRTPLVERASAVALTEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        RA +      +G+  +  D         ++   +F 
Sbjct: 502 TPSEPVTVILSDKGWV--------RAAKGHDVDVAGLSYKAGDGYLAHACGRSNQQAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           S+LG  Y  +   LP    +++G+ L    +L  GE                    +  +
Sbjct: 554 STLGRTYALEAHTLPSA--RSQGEPLTGRFALGAGEE------VRHLVMGNEGEPYLICS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRD-EILSVETCTQENDILLT-TKLGQCVRFPI 710
             G        D I  N++GK  + +      +   +  + E D+ +  +  G+ + FP+
Sbjct: 606 DAGYGFVCTYDDLIGKNKNGKALLTVPEGGLVMAPQKIGSPETDLCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + + V       G + I      +   ++ + MA ++             K       L 
Sbjct: 666 NTLPVLG--KGKGNKLISIPSARVKAREEFMVMAAIIPQGQYVTLFAGKRKLTLKPADLD 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
               E              +     +     E 
Sbjct: 724 YYRGERGRRGAKLPRGLQRVDRIEIEPAAGPEP 756



 Score = 40.5 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 27/193 (13%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD  ++ A            +  +    A              
Sbjct: 518 RAAKGHDVDVAGLSYKAGDGYLAHACGRSN--QQAVFLSTLGRTYALEAHTLPSARSQGE 575

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                   G   E R   +  + +  L  S+ G+G   +  D    N++GK +       
Sbjct: 576 PLTGRFALGAGEEVRHLVMGNEGEPYLICSDAGYGFVCTYDDLIGKNKNGKALLTV---- 631

Query: 835 INEIGALVAVFPV---NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
               G LV         + D  + +S++G ++  P+N + +  +           K  ++
Sbjct: 632 --PEGGLVMAPQKIGSPETDLCMAISNEGRMLLFPLNTLPVLGK----------GKGNKL 679

Query: 892 VSV--ERIRESEI 902
           +S+   R++  E 
Sbjct: 680 ISIPSARVKAREE 692


>gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
 gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3]
          Length = 756

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/812 (29%), Positives = 398/812 (49%), Gaps = 72/812 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++          +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI+F M
Sbjct: 1   MSDK----QNLSLQGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ 
Sbjct: 57  SELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL ++ + T D++PN+DG+ QEP +L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV + C+ +ID+P   L  ++E ++GPD+PT   +I  R  I
Sbjct: 176 ITGIAVGMATDVPPHNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           K  Y +GRGS   R V H+E+       IV++ +P++V+   +L+ IA+ + +K++  +A
Sbjct: 236 KRIYTSGRGSFKSRAVYHMEEGD-----IVISALPHRVSGGKILKDIAKQMIDKKLPMVA 290

Query: 298 DLRDESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD     R+VI  +      + +++ L+  T L+    VN+  +    +P+   L
Sbjct: 291 DLRDESDRNHPTRLVIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDKRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R+  V RR ++ L+K   R H+L GL IA  N+DEV+ IIR   +   ++
Sbjct: 351 LKILNEWLVYRKRTVRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIRNYDD---SK 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL+ R                            LSE Q  AILE++L +L  L    IR
Sbjct: 408 AELITR--------------------------FDLSERQAHAILEIKLRQLAKLEEIQIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E++ L  E  + L +L+S  R   ++K+E+ +        RR+ +VE L      +++ 
Sbjct: 442 SEMSDLNTEKDKLLLLLNSERRFNTLLKKEIKADALNYGDARRSPLVERLEAKALTEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        R+ +        +  +  D         ++ S +F 
Sbjct: 502 LPNEQISVILSRQGWI--------RSAKGHDVDAQALNYKTGDEFLISAQGCSNQSAIFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  Y      LP    Q           L           F       +N   + ++
Sbjct: 554 DASGRAYSLDAHSLPSARSQGE--------PLTGRFNQNEQCAFVSVLLGDDNDQYIISS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDIL-LTTKLGQCVRFPI 710
            HG     K SD    N++GK  + L     +L V +     +D+    +  G+ + FP+
Sbjct: 606 DHGYGFIAKFSDINSRNKNGKALINLSENAYLLPVQKLSNNADDLCLTISNEGRMLIFPV 665

Query: 711 SAIRVFAGRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +++   +     G + I++      K ++ ++M  ++  +          K       L+
Sbjct: 666 NSLPNLS--RGKGNKMINIMGAKATKREEFVTMLRIIPKEGSVTLHAGKRKLTLKASDLV 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           +   E              +      ++  +E
Sbjct: 724 AYQGERGRRGGKLPRGLQRVDNIDVIKMSEEE 755



 Score = 41.7 bits (96), Expect = 0.51,   Method: Composition-based stats.
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 31/260 (11%)

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG- 718
           N    F  + +    A  L+  D   S      E      T+        IS I    G 
Sbjct: 459 NSERRFNTLLKKEIKADALNYGDARRSPLVERLEA--KALTEKELLPNEQISVILSRQGW 516

Query: 719 -RNSVGV----RGISLAKGDQ-VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            R++ G     + ++   GD+ +IS     +  A + +     +  S     +     + 
Sbjct: 517 IRSAKGHDVDAQALNYKTGDEFLISAQGCSNQSAIFID--ASGRAYSLDAHSLPSARSQG 574

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             L    +     +          +Q+I++ S+ G+G      D    N++GK +     
Sbjct: 575 EPLTGRFNQNEQCAFVSVLLGDDNDQYIIS-SDHGYGFIAKFSDINSRNKNGKALINLSE 633

Query: 833 SKINEIGALVAVFPV----NDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFST-- 885
           +          + PV    N+ D + L +S++G ++  PVN +   SR  KG  + +   
Sbjct: 634 N--------AYLLPVQKLSNNADDLCLTISNEGRMLIFPVNSLPNLSR-GKGNKMINIMG 684

Query: 886 ---AKDERVVSVERIRESEI 902
               K E  V++ RI   E 
Sbjct: 685 AKATKREEFVTMLRIIPKEG 704


>gi|296085401|emb|CBI29133.3| unnamed protein product [Vitis vinifera]
          Length = 823

 Score =  525 bits (1352), Expect = e-146,   Method: Composition-based stats.
 Identities = 276/790 (34%), Positives = 425/790 (53%), Gaps = 83/790 (10%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE  L       L DL +DTVDF PN+D S +EP +L AR P +L+NG  GIAVGMATNI
Sbjct: 101 TEAML-------LADLEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNI 153

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HN+GE+VD    +I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGRG I++
Sbjct: 154 PPHNIGELVDVLCVLIRNPEATLQELLEYMPGPDFPTGGLIMGNIGILEAYRTGRGRIIV 213

Query: 251 RGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG + +E   +   R  +++ EIPYQ NK++++EKIAELV  K +  I+D+RDESDR G 
Sbjct: 214 RGKTEVELLDSKTKRTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGM 273

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKRG+   ++LN+LYR T+LQS FS NM+ +   +P+   L  +L+AF+ FR  V
Sbjct: 274 RIVIELKRGSDPSIVLNKLYRLTALQSSFSCNMIGILDGQPKLMGLKELLQAFLDFRCSV 333

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L++A++R H++ G+ + + NLD V+R+I+ +P+   A               
Sbjct: 334 VERRARFKLSQAQERRHIVEGIVVGLDNLDAVIRVIKEAPSNAMA--------------- 378

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                      + G      LSE Q  AIL++ L R+T L R+    E  SL  +I +  
Sbjct: 379 -----------STGLRNEFGLSERQAEAILDISLRRITRLEREKFVTESKSLMEQISKLQ 427

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTR-IVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           ++LSSR ++L +I+QE + +K+   TPRR+         +ED D I  E+M++ VS  GY
Sbjct: 428 ELLSSRKQILQLIEQEAIELKNRFSTPRRSMLEDTDSGQLEDVDVIPNEEMLLAVSEKGY 487

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           VKR+  + +  Q RG  G+S   +R  D ++D  +   H  VL+FS  G V+  + +++P
Sbjct: 488 VKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAHDYVLYFSDRGIVHSARAYKIP 547

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
             +  A G  L+ IL L+ GERIT+I+P  E      + +++  T +G +++  L+ F  
Sbjct: 548 ECTRTAAGTPLVQILCLSDGERITSIIPVSEFA---EDQFLLMLTMNGYIKKVSLNFFSS 604

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           I  +G IA++L   DE+  V  CT ++ + + ++ G  +      IR   GRN+ G   +
Sbjct: 605 IRSTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCEIIRAL-GRNTRGSIAM 663

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +GD++ SM I+  A                                    +E  + +
Sbjct: 664 RLKQGDKMASMDIIPAA--------------------------------IRKDLEKALED 691

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
            + +   L   ++L VSE G GKR     FR+S  +  G+     S       L AVF V
Sbjct: 692 RQSRARNLNGPWLLFVSESGLGKRVPLSRFRLSPLNRVGLIGYKFSA---EDHLAAVFVV 748

Query: 848 --------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
                     ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ S   +  
Sbjct: 749 GFSLTEDGESDEQVVLVSQSGTINRIKVWDISIQSRFARGVILMRLEYAGKIQSASLMSA 808

Query: 900 SEIVDEAEST 909
           +E   + E  
Sbjct: 809 TETETDDEEA 818



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 92/283 (32%), Gaps = 67/283 (23%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G V+R K + F        GK   KL   D +     C   
Sbjct: 467 LEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDAMSDFIVCHAH 526

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     R + G   V+ + L+ G+++ S+  V         
Sbjct: 527 DYVLYFSDRGIVHSARAYKIPECT-RTAAGTPLVQILCLSDGERITSIIPVSE------- 578

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                                        ++QF+L ++  G+ K
Sbjct: 579 -------------------------------------------FAEDQFLLMLTMNGYIK 595

Query: 811 RTSS---YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           + S       R +     GI A  +        L  V    ++D + + S  G +I    
Sbjct: 596 KVSLNFFSSIRST-----GIIAIQLVPG---DELKWVRCCTNDDLVAMASQNGMVILSSC 647

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             IR   R T+G +     + +++ S++ I  +   D  ++ E
Sbjct: 648 EIIRALGRNTRGSIAMRLKQGDKMASMDIIPAAIRKDLEKALE 690


>gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
 gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244]
          Length = 739

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 368/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP+   + L E I  PD PT   +I     +     TGRGS  +R +
Sbjct: 189 LREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSI 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             +EK       IV+TE+PYQV+ + ++ +IA+ +  K++  +AD+RDESD +   R+VI
Sbjct: 249 YTVEKNE-----IVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L K   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR E   L  +     + 
Sbjct: 405 ----------PVLMQHFGIDEIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I  EL     +    RR+ IV       + ++D +  E + V +S  G+V
Sbjct: 455 LANPESLKSLIINELKEDAKKFGDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      + +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+ +G   + + +     
Sbjct: 567 ARGLGE--------PLSSKLSPASGVSFIQVLVEDDANELLVASSNGYGFKTQATQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L +    Q   + + +  G+ +   ++ + V       G + I 
Sbjct: 619 AKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L + +Q++SM  +   +
Sbjct: 677 LDEKEQILSMTTLALDE 693



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G    +   E    E  +L  S  G+G +T +     + ++GK      V +
Sbjct: 575 SSKLSPASGVSFIQVLVEDDANE--LLVASSNGYGFKTQATQLDTNAKAGKAFLT--VME 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +   L    P+     + ++S  G L+ + + E+ + ++  KG  +    + E+++S+
Sbjct: 631 KAKALPL---LPIQQATHVAILSSSGRLLIIDLAELPVLNK-GKGNKLIQLDEKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLALDEII 695


>gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908]
 gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908]
          Length = 758

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 241/815 (29%), Positives = 400/815 (49%), Gaps = 67/815 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLTSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN  E+V  C+ ++DNP  +L  +ME + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDVPPHNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  +E        IV+T +P+Q +   +LE+IA  ++ K++  + 
Sbjct: 236 VKIYTTGRGSIKARAVYAVENGE-----IVITALPHQASGGKILEQIAAQMQAKKLPMVV 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  F VN+  L    +P+   L
Sbjct: 291 DLRDESDHESPVRIVIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ +R + V RR +Y L+K   R H+L  L IA  N+DEV+ IIR+  +P   +
Sbjct: 351 LQILNEWLEYRFQTVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AIL+L+L  L  L    I+
Sbjct: 408 AELMSR--------------------------YNLSDKQADAILDLKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +LSS  R+  +IK+EL    +     RR+ ++E        + + 
Sbjct: 442 TEQSELEAERDKLQLLLSSDRRMKTLIKKELKQDAETYGDDRRSPLIERSESKALTEHEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D         ++   +F 
Sbjct: 502 APVEAVTVVLSEKGWV--------RCAKGHDIDAKALSYKAGDSFLCSATGRSNQPSVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +  +   LP    +++G+ +    +L+ GE +  ++          + Y + A+
Sbjct: 554 GSTGRAFATETHTLPSA--RSQGEPITTRFNLSPGEIMEHVLL------GDEDKYYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPI 710
             G        D I  N++GK  + L +  +++S +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFVGSYKDMISRNKAGKALLTLPANSKVISPKLVDRSRPESILAITNEGRMLLFSM 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
            A+   +     G + I +          +++H     ++    +     +  L   D E
Sbjct: 666 EALPQLS--KGKGNKIIGIPGERAKAREELLIHLYVVPEDTSVTLWAGKRKLTLKPSDLE 723

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                +     +     +R   ++L E     ++E
Sbjct: 724 HYRGERGRRGAKLPRGLQRVDSVELGEGTQQAITE 758


>gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
 gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121]
          Length = 735

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/728 (32%), Positives = 380/728 (52%), Gaps = 69/728 (9%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VIL RA+P + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG++A 
Sbjct: 1   MYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTV 151
           Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL ++ + TV
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSDVLLREVSQGTV 119

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PN+DG+ +EP VL AR PN+L+NG  GIAVGMAT++P HNL EV + C+ +++NP+ 
Sbjct: 120 DWVPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNS 179

Query: 212 DLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
           DLD LM  ++GPD+PTG  I   R  IK  Y TG+G I  R    +E+       IV+ E
Sbjct: 180 DLDDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEEGD-----IVIKE 234

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLY 328
           +P+  + + +LE+IA  ++ K++  I DLRDESD +   R+V+  K      + ++  L+
Sbjct: 235 LPHYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLF 294

Query: 329 RYTSLQSLFSVNMVALNGYKPERFT-LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             T L+  + VNM  +          L   L  ++ FR +VV +R ++ L+K  +R H+L
Sbjct: 295 ASTDLERSYRVNMNVIGLDGLPHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHIL 354

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL +A  N+DEV+ IIR    P+               ++ ++                
Sbjct: 355 EGLLVAFLNIDEVIEIIRNEEKPK---------------VELMLR--------------F 385

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            L+++Q  AILEL+L  L  L    I+ E + L  E K+   +L S  +L  +I +E+  
Sbjct: 386 GLTDIQAEAILELKLRHLAKLEEMRIKGEQDELEKERKQLEALLGSDRKLKKLISEEIQE 445

Query: 508 VKDELDTPRRTRIVEGLLD--MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             D     RRT IVE        +ED +  + + V +S  G++        R+ +     
Sbjct: 446 AVDAHGDERRTPIVERKESQAFSEEDLLSNDPVTVVISKQGWI--------RSAKGHDVD 497

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
              +  +  D  +      ++ +++  +S G  Y  K   LP    + +G+ +   +SL 
Sbjct: 498 PLALNYKSGDEFSISCKGRSNQTLVLLASNGRSYSIKAHTLPSA--RGQGEPITGRISLE 555

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +   I   M       + +N + + A+  G     KL D    N++GK  + L +  ++L
Sbjct: 556 KDVTIVAAML------NADNTFYLIASDAGYGFIAKLGDLHAKNKAGKATLTLPTSAKVL 609

Query: 686 SVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK------GDQVIS 737
           +  + +    + I++T+  G+ + F   ++   A     G + IS+         + V++
Sbjct: 610 TPISVSDPASSHIVVTSNEGRMLAFKADSLPQMA--KGKGNKMISIQASRAASHEEYVVA 667

Query: 738 MAIVLHAD 745
           MA VL  D
Sbjct: 668 MASVLADD 675


>gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
 gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205]
          Length = 739

 Score =  525 bits (1351), Expect = e-146,   Method: Composition-based stats.
 Identities = 227/737 (30%), Positives = 370/737 (50%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP+   + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             I     D+ +IV+TE+PYQV+ + ++ +IA+ +  K++  ++D+RDESD Q   R+VI
Sbjct: 249 YTI-----DKNEIVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQNPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LNK   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + ++Q  AILEL+L  L  L   +IR E   L  +     + 
Sbjct: 405 ----------PVLMQHFGIDDIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LANPESLKNLIINELKEDAKKFGDDRRSPIVTRADAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA + G    + +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGGDVDAANLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISSLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++  + +G   + + +     
Sbjct: 567 ARGLGE--------PLSSKLAPASGVSFIQVFIEDDASELLAVSSNGYGFKTQAAQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  +   L +    Q   + + +  G+ +   ++ + V       G + I 
Sbjct: 619 AKAGKSFLTVADKATALPLLPIQQATHVAILSSAGRLLIVDLTELPVLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L + +Q++SM  +   +
Sbjct: 677 LDEKEQILSMTTLNLDE 693



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 74/189 (39%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGGDVDAANLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +   E    E  +L VS  G+G +T +     + ++GK      ++ 
Sbjct: 575 SSKLAPASGVSFIQVFIEDDASE--LLAVSSNGYGFKTQAAQLDTNAKAGKSF----LTV 628

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++  AL  + P+     + ++S  G L+ V + E+ + ++  KG  +    + E+++S+
Sbjct: 629 ADKATAL-PLLPIQQATHVAILSSAGRLLIVDLTELPVLNK-GKGNKLIQLDEKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 739

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 368/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++   K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L+EGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP+   + L E I  PD PT   +I     +     TGRGS  +R +
Sbjct: 189 LREVVKGTIALIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSI 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             +EK       IV+TE+PYQV+ + ++ +IA+ +  K++  +AD+RDESD +   R+VI
Sbjct: 249 YSVEKNE-----IVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRVDAETVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y L K   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLTKIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR E   L  +     + 
Sbjct: 405 ----------PVLMQHFGIDEIQAEAILELKLRHLAKLEEMEIRREQEELEAKAAVIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L++   L  +I  EL     +    RR+ IV       + ++D +  E + V +S  G+V
Sbjct: 455 LANPESLKNLIITELKEDAKKFGDDRRSPIVARAEAVQIREQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      + +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+ +G   + + +     
Sbjct: 567 ARGLGE--------PLSSKLSPASGVSFIQVLVEDDANELLVASSNGYGFKTQATQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L +    Q   + + +  G+ +   ++ + V       G + I 
Sbjct: 619 AKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L + +Q++SM  +   +
Sbjct: 677 LDEKEQILSMTTLALDE 693



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAANLNYRAGDQYLSHAVGKTNQRVYFLDQKGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G    +   E    E  +L  S  G+G +T +     + ++GK      V +
Sbjct: 575 SSKLSPASGVSFIQVLVEDDANE--LLVASSNGYGFKTQATQLDTNAKAGKAFLT--VME 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             +   L    P+     + ++S  G L+ + + E+ + ++  KG  +    + E+++S+
Sbjct: 631 KAKALPL---LPIQQATHVAILSSSGRLLIIDLAELPVLNK-GKGNKLIQLDEKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLALDEII 695


>gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 764

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 242/815 (29%), Positives = 389/815 (47%), Gaps = 72/815 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDT----DTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV   C  ++D P  +L+ L+ ++  PD+PT   +I  +  I
Sbjct: 176 ITGIAVGMATDIPPHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI +R V   E+       IV+T +P+Q +   +LE+IA  +  K++  +A
Sbjct: 236 HKIYKTGRGSIKMRAVYTQEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     A+ ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P   +
Sbjct: 351 LTILTEWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            L+++Q  AILEL+L  L  L    IR
Sbjct: 408 PVLMER--------------------------FDLTDIQAEAILELKLRHLAKLEEFKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +    L S  R+  ++K+E+    +     RR+ +VE L      ++D 
Sbjct: 442 GEQDELAKERDKLQQTLGSDRRMSTLLKKEIQEAAEIYGDDRRSPVVERLEAKALNEKDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  R  D         ++   +F 
Sbjct: 502 IPSESVTVVLSDKGWA--------RVGKGHDLDVQGLSYRAGDAYRASARGKSNQPAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L+ G        F       +N  ++ A+
Sbjct: 554 DSAGRAFATDAHSLPSA--RSQGEPMTGRFNLSAGA------NFEHVVMGEDNQVLLMAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + +     +LS     +   +  +  +  G+ + FP+
Sbjct: 606 DAGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASDYCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
             +         G + I      +   ++ + +  V+   +         K       L 
Sbjct: 666 RDLPKLG--KGKGNKIISIPGAKVQAREEFVKVLAVVPEGSSVTLHAGKRKLTLKPSDLE 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
               E              + E   +     ++ I
Sbjct: 724 HYYGERGRRGNKLPRGLQRVDEAVVEFSPQNDEPI 758



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 73/193 (37%), Gaps = 27/193 (13%)

Query: 719 RNSVG----VRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   G    V+G+S   GD    S     +  A + +         A     +    E  
Sbjct: 518 RVGKGHDLDVQGLSYRAGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPM 577

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + + + S   N        +    Q +L  S+ G+G  T   D    N++GK + +    
Sbjct: 578 TGRFNLSAGANF---EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSV--- 631

Query: 834 KINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              + G L++   VN+  +D  + +S++G ++  P+ ++    +           K  ++
Sbjct: 632 --PKGGLLLSPIRVNEVASDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKI 679

Query: 892 VSV--ERIRESEI 902
           +S+   +++  E 
Sbjct: 680 ISIPGAKVQAREE 692


>gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
 gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114]
          Length = 767

 Score =  524 bits (1350), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/804 (29%), Positives = 370/804 (46%), Gaps = 77/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI +           + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHISAPSPSPIGE-DYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 562 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAM 614

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
                   Y++  +  G     KL+D +   ++GK+ M +DS + +L             
Sbjct: 615 LTGQPEQHYLLSGS-GGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SLA+G  +  + +    +       
Sbjct: 674 DCKVVLASSNHRLLAFSIGELKVMP--KGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   D +     K
Sbjct: 732 RRGAEHQEKLRIADIDGKRGKKGK 755


>gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 750

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/742 (32%), Positives = 374/742 (50%), Gaps = 67/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++    S      G+   S+ D  +++YL Y++ VIL RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDTTQMS----MDGVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  +LD+LG+ TVDF PN+DG+ QEP+ L AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   C+ +ID P   L+ L+E ++ PD+PT   +I     +
Sbjct: 176 TSGIAVGMATDVPPHNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y+TGRGSI +R V ++E        +V+T +P+QV+ A +LE+IA  ++ K++  + 
Sbjct: 236 HKVYSTGRGSIRMRAVYNVEDGD-----VVITGLPHQVSGAKVLEQIAAQMQAKKLPMVT 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +        +++ L+  T L+S + VNM  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P  A 
Sbjct: 351 RTMLSEWLQYRITTVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE RL +L  L    IR
Sbjct: 410 ----------------------------LMARFELSEAQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E +     L S ++L G++++E+++  D     RR+ +VE        + + 
Sbjct: 442 GEQEELLRERETLAGYLGSETQLKGLVREEIMADADYYGDDRRSPLVERAEAKALSESEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        RA +      S +  +  D         ++   +F 
Sbjct: 502 MPSEPVTVVLSEKGWV--------RAGKGSDVDGSTLSYKAGDTFKTSASGRSNQFAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      L   S + +G+ L   L+   G     ++         +    V A+
Sbjct: 554 DSTGRSFSLAAHTL--ASARTQGEPLSGKLTGQPGASYEWVV------MPDDEALYVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G     K  D    N++GK  + L    ++L     +   E  I+  T  G+ + F  
Sbjct: 606 DAGYGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADEQWIVALTSEGRLLMFKA 665

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
           S +         G + IS+   
Sbjct: 666 SELPQLG--KGKGNKIISVPSD 685



 Score = 42.9 bits (99), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   E   +  S+ G+G      D +  N++GK +        +E   ++   PV++ D+
Sbjct: 594 MPDDEALYVLASDAGYGFLVKGEDLQAKNKNGKALINL-----SENSKVLMPLPVSNADE 648

Query: 853 --IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             I+ ++ +G L+    +E+    +  KG  I S   D
Sbjct: 649 QWIVALTSEGRLLMFKASELPQLGK-GKGNKIISVPSD 685


>gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 770

 Score =  524 bits (1349), Expect = e-146,   Method: Composition-based stats.
 Identities = 244/813 (30%), Positives = 400/813 (49%), Gaps = 73/813 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II      + GI  + +    + SYL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSQEIII----NKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP +L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV + C  ++DN   +L  L+  ++GPD+PT   +I  ++ I
Sbjct: 176 ITGIAVGMATDIPPHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V + E        I++T +P+Q +   +LE+IA  ++ K++  ++
Sbjct: 236 RKMYETGRGSIKMRAVYYEEAGD-----IIITALPHQASGGKILEQIAAQMQAKKLPMVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R++I  +      + ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR++ VVRR ++ L+K   R H+L GL IA  N+DEV+RIIR+   P+   
Sbjct: 351 RMILSEWLVFRKDTVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQ-- 408

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                          T  LS++Q  AILEL+L  L  L    I+
Sbjct: 409 ---------------------------VLMDTFSLSDIQAEAILELKLRHLAKLEEMKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E ++L  E  E   IL S  RL  +IK+E+L+  +     RR+ I+E        +++ 
Sbjct: 442 GEQDALAKERDELQLILGSDRRLKTLIKKEILAAAELYGDDRRSPIIERSESKALTEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  +  D         ++   +F 
Sbjct: 502 IPSEPVTVVLSEKGWA--------RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFM 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  +      LP    +++G+ +    S+  GE +  ++         +    + A+
Sbjct: 554 DTSGRAFSCDAHVLPSA--RSQGEPITGRFSIVSGETVEHVV------MGQDEQQYLIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D I  NR+GK  + L    +++S +       +  L  +  G+ + FP+
Sbjct: 606 DAGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSDWCLAISNEGRMLMFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
             +         G + IS+      A+ + V  +A+V                ++A    
Sbjct: 666 RDLPSLG--KGKGNKIISIPSAKSQAREEFVKVLAVVPQGANVKVLAGKRGMTLTADDLT 723

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                      K    ++     E        E
Sbjct: 724 HYQGERGRRGNKLPRGLQRVDGIEVEAGAMATE 756



 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 23/182 (12%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD+ ++ +                        L S  ++    
Sbjct: 518 RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSCDAHVLPSARSQGEPI 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S V G   E     +   EQ  L  S+ G+G      D    NR+GK   +     
Sbjct: 578 TGRFSIVSGETVE--HVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYLSL---- 631

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             +   +++  PV+D  +D  + +S++G ++  P+ ++    +           K  +++
Sbjct: 632 -PKSAKVISPQPVHDLSSDWCLAISNEGRMLMFPLRDLPSLGK----------GKGNKII 680

Query: 893 SV 894
           S+
Sbjct: 681 SI 682


>gi|163814199|ref|ZP_02205591.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
 gi|158450648|gb|EDP27643.1| hypothetical protein COPEUT_00353 [Coprococcus eutactus ATCC 27759]
          Length = 758

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 233/777 (29%), Positives = 380/777 (48%), Gaps = 42/777 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + 
Sbjct: 2   SEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPHR 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFG+VDG   AA RYTE
Sbjct: 61  KCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYTE 120

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            R+ K    + + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIP
Sbjct: 121 ARISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIP 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
           THNLGEV+D  VA +++P+I+L+ L++++ GPDF TG +I      + N YATG G I +
Sbjct: 181 THNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIKV 240

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG   +      R+ I VTE+PY +    A  L+ +AELVR + +  + D+ D  D+ G 
Sbjct: 241 RGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNGE 300

Query: 309 RVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            + I++K+G S + I    N LY+  +L+  F VN+  +N  KPE   L  ILK +  F+
Sbjct: 301 CLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGKPEVMGLKKILKVYTDFK 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +   + + LL +  +   + +GL  AV  +D ++ I+R S     A+  LM    +  
Sbjct: 361 YGLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTSNV 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +      D           +  +E Q  AIL +RL +L GL  + ++ EL+     IK
Sbjct: 421 KFRFKGSEADA--------KFLCFTEKQADAILAMRLQKLIGLEINALKKELSDAEKLIK 472

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   ++ SR  +   +  ++L +K +   PRRT+I      +  +  +V  D+ V +   
Sbjct: 473 KYTRLMESRDAMKQQMIDDMLEIKAKYAIPRRTQIHNYGTVVVKKAEVVATDVAVLLDRF 532

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K V  +VY               +                +  F+    VY  KV  
Sbjct: 533 YYIKVVDANVYEKNIE----------QINRDYRFAVKCQNLDRIAVFADNNQVYTIKVAD 582

Query: 606 L----------PIGSPQARGKALINILSLNQGERIT--TIMPFPEDESSWNNLYVVFATK 653
           +            G     G+     + + +   +     + F +    +    ++F +K
Sbjct: 583 IIKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDKLLFVSK 642

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +    S F    R+   +    + D+I+ +   ++ + I+  ++ G  +R  IS I
Sbjct: 643 QGLAKVVDGSAFDTTRRAANAS---KAGDDIIYIGKFSEGDFIIAQSEKGYYIRVDISEI 699

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               G+ + GV+ I+L   D + S+ +    D         +       +     ++
Sbjct: 700 -PEKGKGAAGVKLINLEGDDVLESVFVGSTRDTFKVGDNEIIFTRVKPGKRGGKGSK 755



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS++G  K      F  + R+         +       ++ +   ++ D II  S+K
Sbjct: 637 LLFVSKQGLAKVVDGSAFDTTRRAA--------NASKAGDDIIYIGKFSEGDFIIAQSEK 688

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G  IRV ++EI    +   GV + +   D+ + SV
Sbjct: 689 GYYIRVDISEIPEKGKGAAGVKLINLEGDDVLESV 723


>gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
 gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666]
          Length = 784

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 248/776 (31%), Positives = 366/776 (47%), Gaps = 89/776 (11%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + +    E  ++     S+    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +
Sbjct: 7   DAVAPIPEPADQD----SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMAR 62

Query: 63  MGVE-------WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           MG+           K VK AR+ G+V+GKYHPHG+ A YDA+ RMAQD+S R  L++GQG
Sbjct: 63  MGLGFGGANGASGAKPVKSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQG 122

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS DGD  AA RYTE RL +    LLD+L + TVDF PNYDGSF+EP  L AR P  L
Sbjct: 123 NFGSRDGDGAAAMRYTEARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTL 182

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GR 234
           +NG  GIAVG+AT IP+HNL EV D CVA+I  P +  + L  +I GPD+P G  I+   
Sbjct: 183 LNGASGIAVGLATEIPSHNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISST 242

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             I  AY+TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I EL   K   
Sbjct: 243 AEIAAAYSTGRGSLKVRARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKA 302

Query: 295 DIADLRDE-------------------SDRQGYRVVIELKRGASAD-VILNQLYRYTSLQ 334
               L  E                   S     R+V E K        ++N L  +TSL+
Sbjct: 303 GKKALSQEQVQLKQTVLSVLDVVRDESSKDAAVRLVFEPKTSRIGQSELINTLLAHTSLE 362

Query: 335 SLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           S  S+N+  +    KP + TL  +L  ++ FR+  V RR+++ L+K  DR H+L G  + 
Sbjct: 363 SSASINLTMVGLDGKPTQKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLV 422

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
           + N+DEV+ IIR S  P+ A                                   LSE Q
Sbjct: 423 LLNIDEVIAIIRQSDEPKAA-----------------------------LIARFSLSERQ 453

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
              ILE+RL +L  L    I  EL +L  E  +  +IL S + L  ++ +E+ +   +  
Sbjct: 454 AEDILEIRLRQLARLEAIKIEQELKTLREEQGKLEEILGSPAALRRLLVKEIEADAKQFA 513

Query: 514 TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
            PRRT I      +  E  ++ E + V VS  G+V        RA+   G   +    + 
Sbjct: 514 DPRRTLIQAEKKAV-LEVKVLDEPVTVVVSAKGWV--------RARSGHGHDAASFAFKA 564

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI 633
            D +   F   T  ++L F S G +Y   V  LP       G+ L  ++ L  G ++   
Sbjct: 565 GDGLYATFECRTVDTLLAFGSRGRIYSVPVASLPGARGD--GQPLTTLIDLESGTQLVHY 622

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
                      N  ++ +   G      + +     ++GK  +     + +      +  
Sbjct: 623 FA------GPANATLLLSASGGYGFLATVENMTSRLKAGKAFISCAEGETVCRPSHVSGG 676

Query: 694 ---------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
                      +   +  G+ + F I+ ++        G+  + L   D +   A 
Sbjct: 677 TGATPLNPATHVACASTGGRILTFEIAELK-LQAAGGRGLMLLDLDAKDTLAGAAA 731


>gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644]
 gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644]
          Length = 906

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 258/837 (30%), Positives = 386/837 (46%), Gaps = 91/837 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM- 61
           E ++   + + + +  VS+ +  ++ YL YA++VI  RA+PD+RDGLKPV RRIL+ M  
Sbjct: 16  ERLLRRAQSQGEVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWA 75

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            +      ++VK A + GEVM  YHPHG+ +IYDAL RMAQD+SLR  LIEG GNFGS+D
Sbjct: 76  DLKAGATGRFVKSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSID 135

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GDPPAA RYTE RL  AA  LL +L + TV+FR NY  + +EPVVL AR+PN+LVNG  G
Sbjct: 136 GDPPAAMRYTEARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASG 195

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNA 240
           IAVGMAT IP HNL EV +  +A++DNP+I +D L   + GPDFPTG V+L     ++  
Sbjct: 196 IAVGMATTIPPHNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGI 255

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           YA G G+I +RG    E     +E +V+T IPY V K  ++ KI EL+ + ++  + +++
Sbjct: 256 YANGHGTIKLRGTW--EPHPERKEAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVNVK 313

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG-------------- 346
           D SD    R+V++L+ GA+A+  +  LY+ TSLQ    VNM  L                
Sbjct: 314 DLSDE-AIRIVLDLRPGANAEAAMAYLYKNTSLQINHHVNMTCLLPALPNQRVGDNADAT 372

Query: 347 -------YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR-------DRAHVLVGLAI 392
                   + E F L        A   +         L++         +R  +   L+ 
Sbjct: 373 AVRATLADELEPFDLDESEWDADAAASDPASTTLAAGLDQGEERSASVPERLDLKTMLSH 432

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI--------DDSSYTIGSD 444
            +    EVV  IR   +     R  +        + + +D            +       
Sbjct: 433 FLDFRMEVV--IRKLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASNGKADAAPKLA 490

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LS +Q  AILE +L RL  L  D+I  EL       +E   +L   +   G+I+ +
Sbjct: 491 TRFGLSALQADAILETKLYRLGKLEIDEILRELAERRARAEELRRLLGDEAARKGLIRDD 550

Query: 505 LLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           L  +     TPRRTRI     ++E   ED IV ED  V V+  G++KR            
Sbjct: 551 LKRIAKTYGTPRRTRIEGPAPEVEFREEDYIVDEDAWVIVTRDGWIKRQRSFT------- 603

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                 + +RD D V  LF      ++   +S G  Y  +V  L + +      + +  L
Sbjct: 604 --DIESIRVRDGDRVGWLFRARARRTLTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSL 661

Query: 623 SLNQG-----ERITTIMPFPEDESSW--------------------------NNLYVVFA 651
             N+            +P   D +                               YVV  
Sbjct: 662 EDNERIVGVVCHDPRCLPVHADPADHAAPKRQGVLLATAASGEESSSDNSQPQPPYVVVV 721

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAM----KLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           T  G   R  L+    ++     A+         DE+++       + ++L T   + +R
Sbjct: 722 TAGGKALRFSLAALAAVSTRKGRAVMRPDPDRPNDEVVAALVSNGHDQVMLATTSARVIR 781

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRR 763
           F ++ I V +G  + GV  I L    D+V+ + +   A      +      +  +  
Sbjct: 782 FAVTEIPVVSG-PAKGVLAIRLQDETDRVLGVLLTDRAQDTLTVKTSRGGTLELKAG 837



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 31/266 (11%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           + F E++   +    V  T+ G ++R       Q + +   ++++   D +  +      
Sbjct: 573 VEFREEDYIVDEDAWVIVTRDGWIKR-------QRSFTDIESIRVRDGDRVGWLFRARAR 625

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
             + + T  G      +  + +  G      +  SL   ++++ +               
Sbjct: 626 RTLTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSLEDNERIVGVVCHDPRCLPVHADPA 685

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                  Q  L++       S  ++S              + +  +++ V+  G   R S
Sbjct: 686 DHAAPKRQGVLLATAASGEESSSDNS--------------QPQPPYVVVVTAGGKALRFS 731

Query: 814 SYDF----RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
                       R+                 +VA    N +DQ++L +    +IR  V E
Sbjct: 732 LAALAAVSTRKGRA-----VMRPDPDRPNDEVVAALVSNGHDQVMLATTSARVIRFAVTE 786

Query: 870 IRIASRATKGVVIFST-AKDERVVSV 894
           I + S   KGV+      + +RV+ V
Sbjct: 787 IPVVSGPAKGVLAIRLQDETDRVLGV 812


>gi|158428820|pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
           Subunit A (Grla) From Staphylococcus Aureus
          Length = 514

 Score =  523 bits (1348), Expect = e-146,   Method: Composition-based stats.
 Identities = 207/511 (40%), Positives = 315/511 (61%), Gaps = 26/511 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  + I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K 
Sbjct: 23  EVSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKN 82

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RY
Sbjct: 83  FRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRY 142

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+I
Sbjct: 143 TEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDI 202

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV+   +  IDNPDI ++ LM+ I+GPDFPTG +I G  GIK AY +G+G I++
Sbjct: 203 PPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRIIV 262

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     E     R+Q+++TEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+
Sbjct: 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 322

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            IELK+  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV 
Sbjct: 323 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVA 382

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
            RTK+ L+ A  R H++ GL  A++ LD+V+ +IR S N   A+  L++           
Sbjct: 383 NRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIE----------- 431

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              +E Q  AI+ L+L RLT      +  E   L   IK+   I
Sbjct: 432 ---------------VYEFTEEQAEAIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHI 476

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L +   LL +IK+EL  +K +  + R + I 
Sbjct: 477 LDNHDALLNVIKEELNEIKKKFKSERLSLIE 507


>gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
 gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM
           3043]
          Length = 750

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/728 (32%), Positives = 367/728 (50%), Gaps = 63/728 (8%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           EE  +  +S+ +  + +YL Y++ VIL RA+P + DG+KPV RRI++ M ++ +  + KY
Sbjct: 8   EEGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKY 67

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA R
Sbjct: 68  KKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPD-DPKSFAAMR 126

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL +LG+ TVD+ PN+DG+  EP VL AR P+VL+NG  GIAVGMAT+
Sbjct: 127 YTEARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATD 186

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ EVVD    ++ +P   +  LM  +  PDFPT   +I   + +   Y +GRGS+
Sbjct: 187 IPPHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSV 246

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-G 307
            +RG   +E+ +     +VVT +PYQV+ A +LE+IA  ++ K++  +ADLRDES  +  
Sbjct: 247 KLRGRYTLEEGN-----VVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETP 301

Query: 308 YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFR 365
            R+VI  +      + ++  L+  T L+    VN+  +    +P    L  IL  ++ FR
Sbjct: 302 TRLVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILDEWLRFR 361

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
              V RR ++ L K  DR H+L GL  A  N+DEV+RIIR    P+TA            
Sbjct: 362 RATVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTA------------ 409

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE Q  AILELRL  L  L    IR E + L  E +
Sbjct: 410 -----------------LIEAFGLSERQAEAILELRLRHLAKLEEFKIRGEQDELLAERE 452

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVS 543
              ++L + + L  +I++EL    D     RR  +VE        + + I  + + V +S
Sbjct: 453 RLKELLGNDAALTDLIERELRQDADGYGDARRAPLVERGEAKALSEVELIGADPITVVLS 512

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R+ +      +G+  +  D         ++  ++     G  Y    
Sbjct: 513 EKGWI--------RSAKGHEIDPAGLSYKAGDRFHLAARGKSNQPLVLLDDAGRSYTLTA 564

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +++G+ +   ++   G R+                Y++  +  G     +L 
Sbjct: 565 HNLPSA--RSQGEPITGRINPGAGARM-----VGVMLDVPEARYLLA-SDGGYGFIARLD 616

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNS 721
           D I  +++GK A+ +     +L      +  D  I + +  G+ + FP+  + V A    
Sbjct: 617 DLIGKSKAGKAALSVPKGCNVLPPVAVPEGEDTRIAVVSNEGRLLVFPLEQLPVMA--KG 674

Query: 722 VGVRGISL 729
            G + I +
Sbjct: 675 KGNKMIDI 682


>gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
 gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG]
          Length = 747

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
 gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium
           HTCC2143]
          Length = 753

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/750 (31%), Positives = 366/750 (48%), Gaps = 69/750 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  VS+    + +YL Y++ VIL RA+P++ DGLKPV RRI++ M ++G++   KY K
Sbjct: 10  DGVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELGLKAGAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTE 132
            AR  G+V+GKYHPHG++++Y+A+  MAQ++S R  L++GQGN+G S D    AA RYTE
Sbjct: 70  SARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASDDPKSFAAMRYTE 129

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L   +  LL +LG+ TV ++ N+DG+  EP VL AR PNVL+NG  GIAVGMAT+IP 
Sbjct: 130 SKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIAVGMATDIPP 189

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIR 251
           HNL EVV  C+ +++ P   +D L E I+GPD+PT   +I     ++N Y TG+GSI +R
Sbjct: 190 HNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYKTGKGSIRMR 249

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRV 310
            V   E +      +VVT +P+QV+ + +LE+IA+ +  K++  +ADLRDESD +   R+
Sbjct: 250 AVWQKEGSD-----VVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDESDHENPTRL 304

Query: 311 VIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG-ILKAFVAFREEV 368
           VI  K      + ++N L+  T L+  + VN+  +          +  IL  ++ FR + 
Sbjct: 305 VIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDGGPEVKSLDKILTEWLQFRSDT 364

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V RR ++ L K  +R   L  L I   N+DEV+RIIR    P+                 
Sbjct: 365 VRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPK----------------- 407

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L E+Q   I+E +L +L  L    IR+E   L  E +   
Sbjct: 408 ------------PVLIERFDLVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENLE 455

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLG 546
            IL+S  RL  ++K+ELL V +E    RR+ I          +E+ +  E + V +S  G
Sbjct: 456 QILASARRLKTLVKKELLEVAEEYGDDRRSPIASRGEAKAFTEEELMTTEPVTVVLSEKG 515

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R+ +        +  +  D         ++ SV+   S G  Y      L
Sbjct: 516 WV--------RSAKGHDIDPQSLSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTVAAHSL 567

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P    Q           L       +   F        +   + A+  G     K SD  
Sbjct: 568 PSARGQGE--------PLTGRINSPSGASFEGLMMGRADDLYLLASDAGYGFVVKFSDLQ 619

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEN----DILLTTKLGQCVRFPISAIRVFAGRNSV 722
             N++GK A+ L     +L              +   +  G+ + FP++ +   +     
Sbjct: 620 TKNKAGKAALSLPKGARVLQPGMVAGTETELRYVAAVSNEGRMLIFPLTELPTMS--RGK 677

Query: 723 GVRGI-----SLAKGDQ-VISMAIVLHADA 746
           G + I      L   ++ V+++AI+   D 
Sbjct: 678 GNKIIGIPPSRLQAREEFVVAVAIINERDT 707



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/245 (17%), Positives = 85/245 (34%), Gaps = 35/245 (14%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISA---------IRVFAG--RNSVGV----RGI 727
           E+L V     ++        G+   F             +    G  R++ G     + +
Sbjct: 471 ELLEVAEEYGDDRRSPIASRGEAKAFTEEELMTTEPVTVVLSEKGWVRSAKGHDIDPQSL 530

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
           S   GD    +A    ++          K  +     +     +   L    +     S 
Sbjct: 531 SYKSGDSF-HLAAKGKSNQSVVILDSTGKAYTVAAHSLPSARGQGEPLTGRINSPSGASF 589

Query: 788 ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI---GALVAV 844
           E     +  + ++L  S+ G+G      D +  N++GK   A  + K   +   G +   
Sbjct: 590 EGLMMGRADDLYLL-ASDAGYGFVVKFSDLQTKNKAGK--AALSLPKGARVLQPGMVAG- 645

Query: 845 FPVNDND--QIILVSDKGTLIRVPVNEIRIASRATKGVVIF-----ST-AKDERVVSVER 896
               + +   +  VS++G ++  P+ E+   SR  KG  I         A++E VV+V  
Sbjct: 646 ---TETELRYVAAVSNEGRMLIFPLTELPTMSR-GKGNKIIGIPPSRLQAREEFVVAVAI 701

Query: 897 IRESE 901
           I E +
Sbjct: 702 INERD 706


>gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
 gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius
           ATCC 11116]
          Length = 747

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  + R +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASSRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
 gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c]
          Length = 770

 Score =  523 bits (1347), Expect = e-146,   Method: Composition-based stats.
 Identities = 246/814 (30%), Positives = 400/814 (49%), Gaps = 73/814 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II      + GI  + +    + SYL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSQEIII----NKDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSNNAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP +L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV + C  ++DN   +L  L+E ++GPD+PT   +I  ++ I
Sbjct: 176 ITGIAVGMATDIPPHNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V + E        I++T +P+Q +   +LE+IA  ++ K++  ++
Sbjct: 236 RKMYETGRGSIKMRAVYYEEAGD-----IIITALPHQASGGKVLEQIAAQMQAKKLPMVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R++I  +      + ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPTRLLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR++ VVRR +Y L+K   R H+L GL IA  N+DEV+RIIR+   P+   
Sbjct: 351 RMILSEWLIFRKDTVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                     +    T  LS++Q  AILEL+L  L  L    I+
Sbjct: 408 --------------------------LVLMDTFSLSDIQAEAILELKLRHLAKLEEMKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  E   IL S  RL  +IK+E+L+  +     RR+ I+E        +++ 
Sbjct: 442 GEQDELAKERDELQLILGSDRRLKTLIKKEILAAAEMYGDDRRSPIIERSESKALSEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  +  D         ++   +F 
Sbjct: 502 IPSEAVTVVLSEKGWA--------RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFM 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  +      LP    +++G+ +    S+  GE               +    + A+
Sbjct: 554 DTSGRAFSCDAHLLPSA--RSQGEPITGRFSIVSGE------SVEHVVMGQDEQQYLIAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G     K +D I  NR+GK  + L    +I++ +       +  L  +  G+ + FP+
Sbjct: 606 DAGYGFVGKFADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSDWCLAISNEGRMLMFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
             +         G + IS+      A+ + V  +A+V                ++A    
Sbjct: 666 RDLPSLG--KGKGNKIISIPSAKSQAREEFVKVLAVVPQGANIKVLAGKRGMTLTADDLT 723

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
                      K    ++     E      + +Q
Sbjct: 724 HYQGERGRRGNKLPRGLQRVDGIEVEAGTGVSDQ 757



 Score = 44.4 bits (103), Expect = 0.079,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 23/182 (12%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD+ ++ +                        L S  ++    
Sbjct: 518 RCAKGHDVDVVGLSYKAGDKYLASSKGRSNQQAVFMDTSGRAFSCDAHLLPSARSQGEPI 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S V G   E     +   EQ  L  S+ G+G      D    NR+GK   +     
Sbjct: 578 TGRFSIVSGESVE--HVVMGQDEQQYLIASDAGYGFVGKFADMISKNRAGKAYISL---- 631

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             +   ++A   V+D  +D  + +S++G ++  P+ ++    +           K  +++
Sbjct: 632 -PKAAKIIAPQAVHDLSSDWCLAISNEGRMLMFPLRDLPSLGK----------GKGNKII 680

Query: 893 SV 894
           S+
Sbjct: 681 SI 682


>gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179]
          Length = 731

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 239/783 (30%), Positives = 386/783 (49%), Gaps = 67/783 (8%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTV 151
           Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TV
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTV 119

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+    + +++NPD 
Sbjct: 120 DYQPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDT 179

Query: 212 DLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            +D +++I++ PDFPT   +I  +  ++  Y  G+GS+ +R V   E        IV+T 
Sbjct: 180 SMDEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAVWSKEDGE-----IVITA 234

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLY 328
           +PYQ + A ++E+IA  +R K++  + D++DESD +   R+VI  +      + ++  L+
Sbjct: 235 LPYQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLF 294

Query: 329 RYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             T L+  + VNM  +    KP    L  IL  +++FR + V RR +Y L+K   R H+L
Sbjct: 295 ATTDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHIL 354

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL IA  N+DEV+ IIR    P   ++ELM R                           
Sbjct: 355 DGLLIAFLNIDEVIHIIRNEDEP---KQELMSR--------------------------F 385

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LSE Q  AIL LRL  L  L   ++R E   L  E K+   ILSS   L  +IK+E+  
Sbjct: 386 ALSEEQAEAILNLRLRHLAKLEETELRAEQKQLEQERKQLEKILSSDKNLNQLIKKEIEQ 445

Query: 508 VKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
                 +PR ++IVE      + +   +  E + V +S +G+V        R  +     
Sbjct: 446 DAKTYASPRLSKIVEREEAKAISESALVPVEPVTVILSEMGWV--------RCAKGHDID 497

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
              +  +  D         ++  V+F  S G  Y      LP    +++G+ +   L+L 
Sbjct: 498 PQSLSYKAGDNYLAHVCGRSNQQVIFLDSTGRSYSLDPLSLPSA--RSQGEPITGKLTLP 555

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            G  I  ++             ++ A+  G        D I  N++GK A+ L    ++L
Sbjct: 556 AGAMIEQLL------MPKAEQALLMASDAGYGFVCNAEDLITRNKAGKAAISLPENAKVL 609

Query: 686 -SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-----AKGDQVISMA 739
             V    +   ++  T   + + FP+S +   +     G + I++        ++++   
Sbjct: 610 PPVVIENKSVLLVAITSANKMLLFPLSELPQLS--KGKGNKIINIPAAKAKAREELLVRL 667

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            V+   +    R    K     + +     E      +      + +E      +  E+F
Sbjct: 668 FVIEEGSSLIFRSGKRKVTLDAKEISHYYGERGRRGASLPRGVQHSAEIEIIPPEKPEEF 727

Query: 800 ILT 802
           +LT
Sbjct: 728 VLT 730



 Score = 39.0 bits (89), Expect = 3.7,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           +   EQ +L  S+ G+G   ++ D    N++GK   A  + +  ++   V    V +N  
Sbjct: 565 MPKAEQALLMASDAGYGFVCNAEDLITRNKAGK--AAISLPENAKVLPPV----VIENKS 618

Query: 853 IIL--VSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRE 899
           ++L  ++    ++  P++E+   S+  KG  I +       A++E +V +  I E
Sbjct: 619 VLLVAITSANKMLLFPLSELPQLSK-GKGNKIINIPAAKAKAREELLVRLFVIEE 672


>gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII]
 gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866]
          Length = 747

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 375/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  + R +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASSRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLLFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a]
 gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas
           maltophilia K279a]
          Length = 747

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 236/742 (31%), Positives = 365/742 (49%), Gaps = 67/742 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K AR
Sbjct: 13  EQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSAR 72

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE +
Sbjct: 73  TVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTESK 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P HN
Sbjct: 132 LTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           L E+V   + ++DNPD  +  L E ++GPD+P+ A I+     ++N Y TG GS+  R  
Sbjct: 192 LNEIVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYETGNGSVRARAT 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
            + E        IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD     RVV+
Sbjct: 252 FNKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVL 306

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +     AD ++  L+  T L+  + VN+  +    +P+   L  +L  ++ FR   V 
Sbjct: 307 VPRSNRVDADQLMGHLFATTDLERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVT 366

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A                 
Sbjct: 367 RRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA----------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LSE Q   ILE +L +L  L    IR E + L  E ++ L I
Sbjct: 410 ------------LIARFGLSEEQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L S+++L  +I+ EL +   +    RR+ +V+      +++ + +  E M V +S  G++
Sbjct: 458 LDSKAKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      S +  RD D +       +   V F  S G  Y   V  LP 
Sbjct: 518 --------RAAKGHDVDASALSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPS 569

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                      N   L           F    S+  +   V A+ HG     +  + I  
Sbjct: 570 ARG--------NGEPLTGRFSPAAGTSFVTLASAEPDARFVLASSHGYGFVTRFENLIGR 621

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N++GK  + L S   +L+         + I+  T  G  +    + +         G + 
Sbjct: 622 NKAGKAMLNLSSGSSVLTPSMVANVATDRIVAVTSSGNLLAIAANDLPELD--KGKGNKI 679

Query: 727 ISLAK----GDQVISMAIVLHA 744
           I + K     ++V+++  +   
Sbjct: 680 IEIPKAKLATERVVAIVAISPG 701


>gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
          Length = 747

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 376/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDNYRAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
 gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51]
          Length = 607

 Score =  523 bits (1346), Expect = e-146,   Method: Composition-based stats.
 Identities = 222/647 (34%), Positives = 342/647 (52%), Gaps = 57/647 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    E    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----ELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + A  LL ++G+ TVD+ PN+DG+ QEP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D P   ++ L E I+GPD+PT   ++  R  I
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +GRGSI +R V  +E        IVVT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKMYESGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     AD ++  L+  T L+S + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDGRPQLKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR   +P+ A 
Sbjct: 351 RTILVEWLEFRTHTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+E+Q   ILE RL +L  L    IR
Sbjct: 410 ----------------------------LIARFGLTEIQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S ++L  +++ EL+   +     RR+ IVE        + + 
Sbjct: 442 GEQDELLKEQAKLQALLGSEAKLRKLVRSELIKDAETYGDDRRSPIVERAEAKALSENEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G++        R  +      +G+  +  D         ++   +  
Sbjct: 502 MPTEPVTVVLSEKGWI--------RCAKGHDIDATGLSYKAGDGFKAAAAGRSNQFAVLI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            S G  Y      LP    + +G+ L   L+   G     ++   +D
Sbjct: 554 DSTGRSYSLAAHSLPSA--RGQGEPLTGRLTPPPGATFDCVLLPEDD 598


>gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit
          Length = 716

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 230/701 (32%), Positives = 361/701 (51%), Gaps = 62/701 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ P
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 119

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD 
Sbjct: 120 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 179

Query: 216 LMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V   E        +V++ +P+Q
Sbjct: 180 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISALPHQ 234

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTS 332
           V+ A +LE+IA  +R K++  + DLRDESD +   R+VI  +      D ++N L+  T 
Sbjct: 235 VSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTD 294

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL 
Sbjct: 295 LEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLL 354

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           +A  N+DEV+ IIR    P+ A                                   L+E
Sbjct: 355 VAFLNIDEVIEIIRNEDEPKPA-----------------------------LMSRFGLTE 385

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +    
Sbjct: 386 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 445

Query: 512 LDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ + E      M + D +  E + + +S +G+V        R+ +       G+
Sbjct: 446 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGL 497

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             +  D         ++  V+F  S G  Y      LP    + +G+ L   L+L  G  
Sbjct: 498 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGAT 555

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVE 688
           +  ++         ++  ++ A+  G       +D +  NR+GK  + L     ++  V 
Sbjct: 556 VDHML------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 609

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                + +L  T+ G+ + FP+S +   +     G + I++
Sbjct: 610 IEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKIINI 648



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 485 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 542

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 543 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 598

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 599 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 652


>gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
 gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703]
          Length = 767

 Score =  522 bits (1345), Expect = e-146,   Method: Composition-based stats.
 Identities = 240/804 (29%), Positives = 370/804 (46%), Gaps = 77/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI +           + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHISAPSPSPVGE-DYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EPV L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ L++   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 562 QTIEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAM 614

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
                   Y++  +  G     KL+D I   ++GK+ M +DS + +L             
Sbjct: 615 LTGQPEQHYLLSGS-GGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SLA+G  +  + +    +       
Sbjct: 674 DCKVVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   D +     K
Sbjct: 732 RRGAEHQEKLRIADIDGKRGKKGK 755


>gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
 gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913]
          Length = 765

 Score =  522 bits (1345), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/745 (31%), Positives = 372/745 (49%), Gaps = 68/745 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDT----DTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EP+VL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV   C  ++D P  +L+ L++++  PD+PT   +I  +  I
Sbjct: 176 VTGIAVGMATDIPPHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI +R V   E+       IV+T +P+Q + A +LE+IA  +  K++  +A
Sbjct: 236 HKIYKTGRGSIKMRAVYCEEQGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     A+ ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+   
Sbjct: 351 RSILTEWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+++Q  AILEL+L  L  L    IR
Sbjct: 408 --------------------------PLLMERFELTDIQAEAILELKLRHLAKLEEFKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +    L S  R+  ++K+E+    +     RR+ ++E +      ++D 
Sbjct: 442 GEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEAAEMYGDDRRSPVIERVEAKALSEKDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  R  D         ++   +F 
Sbjct: 502 IPSESVTVVLSDKGWA--------RVGKGHDLDVEGLNYRAGDGYRASARGKSNQPAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L  G     ++         +   ++ A+
Sbjct: 554 DSAGRAFATDAHSLPSA--RSQGEPMTGRFNLTSGASFEHVV------MGEDAQVLLMAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + +     +LS         +  +  +  G+ + FP+
Sbjct: 606 DAGYGFITDFKDLVSKNKNGKALVSVPKGGVLLSPIRVNDVASDYCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQV 735
             +         G + IS+  G +V
Sbjct: 666 RDLPKLG--KGKGNKIISI-PGAKV 687



 Score = 45.6 bits (106), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 72/193 (37%), Gaps = 27/193 (13%)

Query: 719 RNSVG----VRGISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   G    V G++   GD    S     +  A + +         A     +    E  
Sbjct: 518 RVGKGHDLDVEGLNYRAGDGYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPM 577

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           + + + +   +        +    Q +L  S+ G+G  T   D    N++GK + +    
Sbjct: 578 TGRFNLTSGASF---EHVVMGEDAQVLLMASDAGYGFITDFKDLVSKNKNGKALVSV--- 631

Query: 834 KINEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
              + G L++   VND  +D  + +S++G ++  P+ ++    +           K  ++
Sbjct: 632 --PKGGVLLSPIRVNDVASDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKI 679

Query: 892 VSV--ERIRESEI 902
           +S+   +++  E 
Sbjct: 680 ISIPGAKVQAREE 692


>gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 798

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/804 (29%), Positives = 372/804 (46%), Gaps = 80/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++   S   E +  I    +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M
Sbjct: 32  MSQETPSVLSENDTLI----LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAM 87

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 88  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 147

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F+EP +L AR P VL+NG  
Sbjct: 148 DGDGAAAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGAS 207

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP HNLGEV    +A++  P ++   LME I  PDF  G  I+     ++ 
Sbjct: 208 GIAVGMATEIPPHNLGEVTQAAIALLKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQ 267

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IE+ +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 268 IYETGKGSVRVRARYEIERLARGQWRVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQL 327

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+    +
Sbjct: 328 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLM 387

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ L++   R H+L G      ++D
Sbjct: 388 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHID 447

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+T                                    L+E+Q   IL
Sbjct: 448 EVIKVIRESDDPKT-----------------------------DLMAAFGLTEIQAEDIL 478

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 479 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKKKLIIKEMQADMKQYGDERRT 538

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 539 LVE-EAGRAVLTQTTADEPVTLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 589

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   +LG  Y      +P G     G  + +++ L  G +   ++    
Sbjct: 590 QTLEGRTVQPVIILDTLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAKPAAMLT--- 644

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
                   Y++  +  G     KL+D +  N++GK+ M LD+ + +L             
Sbjct: 645 --GVPEQHYLLAGS-GGYGFIAKLADMVSRNKNGKVLMTLDAGETVLPPVPVYASSLINP 701

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L     + + FP+  ++V       G++   L+   ++  +A+V   +   +   
Sbjct: 702 DCKVVLADSGNRLLAFPLGELKVMP--KGRGLQLTPLSDDLRLEHIAVVSTPEFIVESVG 759

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+     +     K
Sbjct: 760 KRGAAHQEKLRIQDIAGKRSRKGK 783


>gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
 gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1]
          Length = 739

 Score =  522 bits (1344), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 367/741 (49%), Gaps = 61/741 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   +  LL++LG+ T D++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV+ G +A+I NP    + L E I GPD PT   +I     +     TGRGS  
Sbjct: 185 PPHNLREVIKGTIALIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRGSYR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD     
Sbjct: 245 MRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFRE 366
           R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R+
Sbjct: 300 RLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRK 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+               
Sbjct: 360 KTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK--------------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + E+Q  AILEL+L  L  L   +IR+E + L  +   
Sbjct: 405 --------------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELAAKAAI 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
             + L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S 
Sbjct: 451 IREQLENPESLKNLIIGELKEDAKKFGDERRSPIVVRAEAVQIKEQDLMPAEAVTVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +        +  R  D      +  T+  + F    G  Y   + 
Sbjct: 511 AGWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPIS 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP                L+      + + F +         ++ A+  G   + +   
Sbjct: 563 SLPSARGLGE--------PLSSKLAPASGVSFIQVYLEDEESELIAASTSGYGFKTQTKQ 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                ++GK  + +  + + L + +      + + +  G+ +   ++ +         G 
Sbjct: 615 LDTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNLN--KGKGN 672

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + I L   +Q++SM  +   +
Sbjct: 673 KLIQLDAKEQILSMTTLNLDE 693



 Score = 41.7 bits (96), Expect = 0.65,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +   E   +E  ++  S  G+G +T +     + ++GK      V +
Sbjct: 575 SSKLAPASGVSFIQVYLE--DEESELIAASTSGYGFKTQTKQLDTNAKAGK--TFLSVPE 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++   L++   +     + ++S  G L+ + + E+   ++  KG  +      E+++S+
Sbjct: 631 KSKALPLISAQNMT---HLAVLSSAGRLLIIDLAELPNLNK-GKGNKLIQLDAKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
 gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC
           12472]
          Length = 783

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/754 (30%), Positives = 364/754 (48%), Gaps = 74/754 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL YA++V+ GRA+P++ DG KPV RRIL+ M  MG+    K VK AR+ 
Sbjct: 32  IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVV 91

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GE++GKYHPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS DGD  AA RYTE RL   
Sbjct: 92  GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 151

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL ++   TVDF PNYDG+F+EP +L AR P VL+NG  GIAVG+AT IP HNL EV
Sbjct: 152 AELLLSEIDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 211

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
              CVA++D+P++D  ALM+ + GPDFP G   I     I +AY TG+GS+ +R    +E
Sbjct: 212 AAACVALLDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVE 271

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD------------------L 299
           K +  + + +VTE+P   +   +L +I E    K                         +
Sbjct: 272 KLARGQWRAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRV 331

Query: 300 RDESDRQ-GYRVVIELKRGAS-ADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIG 356
           RDESD +   R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  
Sbjct: 332 RDESDSESPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDGRPGQKGLKP 391

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++ FR   V RR  + L +   R H+L G  IA  ++DEV+R+IR S  P+     
Sbjct: 392 ILTEWIDFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPK----- 446

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           L+E+Q   ILE+RL +L  L    +  E
Sbjct: 447 ------------------------PDLIKAFGLTEIQAEDILEIRLRQLARLEGFKLEKE 482

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L+ L  E +    +L +   L  +I+ E+ +   +    RRT I               E
Sbjct: 483 LSELREEREGLRHVLDTPDALTRLIRDEIQADAAKYGDKRRTEIK-AAERAVLTQTTADE 541

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
            + + +S  G++        RA+         +  +D D +  +    T  + +     G
Sbjct: 542 PVTLILSQKGWI--------RARVGHNVELETLSFKDGDGLAAVVETRTVWNAIVLDHNG 593

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
             Y      +P G     G  + +++ L  G +   ++   +      + +VV  +  G 
Sbjct: 594 RAYTIDPATVPTGRGD--GVPVASLVDLQDGAKPAQLISGRD-----EDRFVVAGS-GGY 645

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QENDILLTTKLGQCVRFPISA 712
               K+ D     ++GK  + LD+ + +L          ++  ++  +   + + FP + 
Sbjct: 646 GFIAKIGDMAGRVKAGKAFITLDASETVLEPVKLPAAPLEQLQLVAASDSDRLLAFPAAE 705

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           ++  A     G+  ++L  G  + ++ +V    A
Sbjct: 706 LKELA--KGRGLMLMALDDGAALTAIGLVAGGKA 737


>gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium
           MedeBAC35C06]
          Length = 743

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 236/721 (32%), Positives = 373/721 (51%), Gaps = 62/721 (8%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           ++S+    +++YL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY K AR 
Sbjct: 7   NISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSART 66

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
            G+V+GK+HPHG++A Y+A+  MAQD+S +  L++GQGN+GS D DP   AA RYTE +L
Sbjct: 67  VGDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQD-DPKSFAAMRYTESKL 125

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K A  L+D+L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+I +HN+
Sbjct: 126 TKFAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISSHNI 185

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIRGVS 254
            EV+D  + V++NP      L++II+GPDF     ++     +   Y+TGRG   I+   
Sbjct: 186 NEVLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQANW 245

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIE 313
             E        IV+T +PYQ + + +LE+IA+ +  K++  I DL DE D Q   R+VI 
Sbjct: 246 DKE-----GNDIVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRLVIS 300

Query: 314 LKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVR 371
           LK    +AD ++N L+  T LQ  +  NM  ++    P  F L  +LK ++ FR+  V R
Sbjct: 301 LKSNRVNADDVMNHLFATTDLQKSYRFNMNLISLSGNPRVFALDELLKEWIKFRKITVTR 360

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           + +  L++  DR H+L GLAI   N+DEV++IIR S  P+                    
Sbjct: 361 KLENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEPKK------------------- 401

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                            LS++Q  AILE+RL +L  L +  I  E N L  E  E   IL
Sbjct: 402 ----------ELSKKFKLSDIQVNAILEIRLRQLAKLEQIKIETEQNKLSEEQSEIEKIL 451

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
           +SRSRL  +IK EL+ +K E    R++ I+E        +E+ IV E + + +S  G++ 
Sbjct: 452 ASRSRLKTLIKNELIEIKQEFGEERKSPIIESSSAKVFSEEETIVTEPVTIVLSKAGWI- 510

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  R+ +      S +  R +D + D     ++ + +F +S G  Y      LP  
Sbjct: 511 -------RSAKGHEIDPSSLSYRGDDLLQDFCRGKSNQNTVFLASNGKAYTLSAHSLPSA 563

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                         +       + + F            V +   G    +  +  I   
Sbjct: 564 RGLGD--------PITGRISADSGIIFKSCAIGEQEDKYVVSNSAGFGYISDFASMISNK 615

Query: 670 RSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
           +SG+  MK+    ++       ++++ I+  + +G+ + F I  +         G + I+
Sbjct: 616 KSGRAFMKVPEGADVHKAIKYREDHEFIVAISNIGRMLIFNIEELPFLQ--KGKGNKIIN 673

Query: 729 L 729
           +
Sbjct: 674 I 674


>gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810]
          Length = 747

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 377/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D +  E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMMPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
 gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127]
          Length = 747

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/729 (32%), Positives = 376/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K A  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678



 Score = 38.2 bits (87), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               ++ ++  G ++  P  ++ + S+  KG  + 
Sbjct: 643 STALVVAITSAGRMLIFPAQDLPVLSK-GKGNKMI 676


>gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
 gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA]
          Length = 747

 Score =  522 bits (1343), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 376/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDP---KAELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYTSPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678



 Score = 38.2 bits (87), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               ++ ++  G ++  P  ++ + S+  KG  + 
Sbjct: 643 STALVVAITSAGRMLIFPAQDLPVLSK-GKGNKMI 676


>gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 739

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 365/741 (49%), Gaps = 61/741 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV+ G +A+I NP    + L E I  PD PT   +I     +     TGRGS  
Sbjct: 185 PPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   
Sbjct: 245 MRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFRE 366
           R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R+
Sbjct: 300 RLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRK 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+               
Sbjct: 360 KTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK--------------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + E+Q  AILEL+L  L  L   +IR E + L  +   
Sbjct: 405 --------------PVLMDHFKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELSAKAAI 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
             + L +   L  +I  EL     +    RR+ IV       + ++D +  E + V +S 
Sbjct: 451 IREQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIREQDLMPAEAVTVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +        +  R  D      +  T+  + F    G  Y   + 
Sbjct: 511 AGWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPIS 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP                L+      + + F +         ++ A+  G   + ++  
Sbjct: 563 NLPSARGLGE--------PLSSKLAPASGVAFIQVYLDDEESELIAASSSGYGFKTQVKQ 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                ++GK  + +  + + L + +      + + +  G+ +   +S +         G 
Sbjct: 615 LDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNLN--KGKGN 672

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + I L   +Q++SM  +   +
Sbjct: 673 KLIQLEAKEQILSMTTLNLDE 693



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISNLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +    L  +E  ++  S  G+G +T       + ++GK      V +
Sbjct: 575 SSKLAPASGVAFIQVY--LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSF--LSVPE 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++   L++   +     + ++S  G L+ + ++E+   ++  KG  +      E+++S+
Sbjct: 631 KSKALPLISAQNMT---HLAVLSSAGRLLIIDLSELPNLNK-GKGNKLIQLEAKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|295094763|emb|CBK83854.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Coprococcus sp. ART55/1]
          Length = 758

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 232/777 (29%), Positives = 377/777 (48%), Gaps = 42/777 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + 
Sbjct: 2   SEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLDGLA-GSDKPHR 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFG+VDG   AA RYTE
Sbjct: 61  KCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGAVDGSGAAAMRYTE 120

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            R+ K    + + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIP
Sbjct: 121 ARISKYTEDVCMKDLPFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIP 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
           THNLGEV+D  VA +++P+I+L+ L++++ GPDF TG +I      + N YATG G I +
Sbjct: 181 THNLGEVIDATVAYLNDPEIELEDLLKLMPGPDFATGGIINATPEELYNVYATGLGKIKV 240

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG   +      R+ I VTE+PY +    A  L+ +AELVR + +  + D+ D  D+ G 
Sbjct: 241 RGKVEVRDIGYGRKSICVTELPYTMIGGTAKFLDTVAELVRNRELPAVVDIADRGDKNGE 300

Query: 309 RVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            + I++K+G S + I    N LY+  +L+  F VN+  +N  KPE   L  ILK +  F+
Sbjct: 301 CLCIDVKKGTSDEEIQNIINILYKKAALEDTFGVNINCINNGKPEVMGLKKILKVYTDFK 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +   + + LL +  +   + +GL  AV  +D ++ I+R S     A+  LM    +  
Sbjct: 361 YGLYDTKYRKLLAQQEEIREIKMGLLTAVDCIDLIIEILRGSTKVADAKACLMHGDTSNV 420

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +      D           +  +E Q  AIL +RL +L GL  + ++ EL      IK
Sbjct: 421 KFRFKGSEADA--------KFLCFTEKQADAILAMRLQKLIGLEINALKKELADAEKLIK 472

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   ++ SR  +   +  ++L +K +   PRRT+I      +  +  +V  D+ V +   
Sbjct: 473 KYTRLMESRDAMKQQMIDDMLEIKAKYAIPRRTQIHNYGTVVVKKAEVVATDVAVLLDRF 532

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K V  +VY               +                +  F+    VY  KV  
Sbjct: 533 YYIKVVDANVYEKNID----------QITKDYRFAVKCQNLDRIAVFADNNQVYTIKVAD 582

Query: 606 L----------PIGSPQARGKALINILSLNQGERIT--TIMPFPEDESSWNNLYVVFATK 653
           +            G     G+     + + +   +     + F +    +    ++F +K
Sbjct: 583 IIKLQAKKNTSKKGGGSLIGRLADKGIQVFEFCNMNGDENILFMDCIEHFVTDKLLFVSK 642

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G  +    S F    R+   +      D+I+ +   ++ + I+  ++ G  +R   + I
Sbjct: 643 QGLAKVVDGSAFDTTRRAANAS---KVGDDIIYIGKISEGDFIIAQSEKGYYIRVDAAEI 699

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
               G+ + GVR I+L   D + S+ +    D         +       +     ++
Sbjct: 700 -PEKGKGAAGVRLINLEGDDVLESVFVGSTKDTFKVGDNEIIFTRVKPGKRGGKGSK 755



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L VS++G  K      F  + R+         +       ++ +  +++ D II  S+K
Sbjct: 637 LLFVSKQGLAKVVDGSAFDTTRRAA--------NASKVGDDIIYIGKISEGDFIIAQSEK 688

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           G  IRV   EI    +   GV + +   D+ + SV
Sbjct: 689 GYYIRVDAAEIPEKGKGAAGVRLINLEGDDVLESV 723


>gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
 gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4]
          Length = 772

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 226/777 (29%), Positives = 378/777 (48%), Gaps = 81/777 (10%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M++ I  + +     + + + S+ +  + +YL YA+ VI+ RA+P++ DGLKPV RRI++
Sbjct: 1   MSDVIDHTLDPILANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G++   K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+G
Sbjct: 61  AMSELGLKSTAKAKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWG 120

Query: 119 SVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           S D DP   AA RYTE ++   A+ LL +LG+ TVD++ N+DG+ QEP  L AR PN+L+
Sbjct: 121 SPD-DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILL 179

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRT 235
           NG  GIAVGMAT+IP HNL EVV   + ++ NP++ +  L + I  PD PT   +I  + 
Sbjct: 180 NGTTGIAVGMATDIPPHNLIEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKK 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            ++  Y TGRGS  +R   HI+    +   +++  +PYQV+   + E+IA+L+ +K++  
Sbjct: 240 DLQAMYETGRGSYKMRATFHIDPKEKNL--VIIDALPYQVSGNKIQEQIAKLMTDKKLPW 297

Query: 296 IADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           I D+ DESD +   R+V+EL+      D +++ L+  T L+S + VNM  +    KP+  
Sbjct: 298 ITDIHDESDHENACRIVLELRSTRVDVDRVMSHLFASTDLESNYRVNMNMIGLNGKPQVK 357

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  IL+ ++  R  VV RR +Y L+K   R H+L GL IA  N+DEV+RIIR   +P+ 
Sbjct: 358 NLKEILEEWLVCRRSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPK- 416

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                                       +       L+++Q  AIL++RL +L  L   +
Sbjct: 417 ----------------------------LSLMQDYDLTDIQANAILDIRLRQLAKLEEIE 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R E + L  E     + L +   L  ++  EL +   E    R + + E       ++ 
Sbjct: 449 LRREQDELAAERAIIQEYLDNPDSLTTLMIDELTADMKEHGNERVSPLAEREEAQALKES 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D +  E +   +S  G++        RA +      +G+  R  D         ++  + 
Sbjct: 509 DLVPSEPITAVLSKAGWI--------RAAKGHDVDAAGMSYRSGDAYQAHVRGKSNEKIY 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  Y      L     Q           L    +      F +  +  ++  ++ 
Sbjct: 561 VLDSTGRSYSIDAHSLASARGQGD--------PLTSVLKPPAGATFEQLLTGADDQRIIL 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE----------------- 693
           A+  G    N + +     ++GK  + L +   +L +     +                 
Sbjct: 613 ASSQGYGFINTIGNLDSNQKAGKNIINLAANSRLLPIACIDTQADLLVSAENNGISDTEN 672

Query: 694 ----NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               + I + T  G  + F +  +     R   G + I+L   ++V+++  +   D+
Sbjct: 673 SSTPDHIAVVTNAGYLLIFALDDL-PEQARG-KGNKMITLKGDEEVLTITPLSKQDS 727



 Score = 43.6 bits (101), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 25/215 (11%)

Query: 709 PISAIRVFAG--RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           PI+A+   AG  R + G      G+S   GD     A V     +    +       +  
Sbjct: 515 PITAVLSKAGWIRAAKGHDVDAAGMSYRSGD--AYQAHVRGKSNEKIYVLDSTGRSYSID 572

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                  +          +Q I+  S +G+G   +  +   + +
Sbjct: 573 AHSLASARGQGDPLTSVLKPPAGATFEQLLTGADDQRIILASSQGYGFINTIGNLDSNQK 632

Query: 823 SGKGIRATDVSKI--------NEIGALVAVFP--VNDN------DQIILVSDKGTLIRVP 866
           +GK I     +           +   LV+     ++D       D I +V++ G L+   
Sbjct: 633 AGKNIINLAANSRLLPIACIDTQADLLVSAENNGISDTENSSTPDHIAVVTNAGYLLIFA 692

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           ++++   +R  KG  + +   DE V+++  + + +
Sbjct: 693 LDDLPEQAR-GKGNKMITLKGDEEVLTITPLSKQD 726


>gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
 gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046]
          Length = 739

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/734 (31%), Positives = 372/734 (50%), Gaps = 61/734 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R   IEGQGN+GS D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L + +  LL +LG+ T D++ N+DGS +EPV L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEAKLSQYSEVLLSELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EVV G +A+I NP++  + + E I  PD PT   +I     +    +TGRGS  
Sbjct: 185 PPHNLREVVKGTIALIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRGSYR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V  IEK       IV+T++PYQV+ + ++ +IA+ ++ K++  ++D+RDESD Q   
Sbjct: 245 MRSVYRIEKNE-----IVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQNPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFRE 366
           R+VI L+     A+ +++ L+  T L+S + VNM  +    +P+  ++  IL  ++  R+
Sbjct: 300 RLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRK 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RR +Y LNK   R H+L GL IA  N+DEV+RIIR    P   + ELM R      
Sbjct: 360 ETVTRRLQYHLNKIEKRLHILGGLIIAYLNIDEVIRIIREEEQP---KAELMSR------ 410

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + ++Q  AILEL+L  L  L   ++R E   L  +   
Sbjct: 411 --------------------FNIDDIQAEAILELKLRHLARLEEMEMRREQEELEAKAAL 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
             + L++   L  +I  EL     +    RR+ IV       M ++D +  + + V +S 
Sbjct: 451 IREQLANPESLKALIINELKDDAKKYGDDRRSPIVHRAEATAMSEQDFMPADPVTVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R+ +        +  R  D         ++  V      G  Y   + 
Sbjct: 511 AGWI--------RSAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDESGRSYALAIN 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP                L+      + + F +   + +   V+  +  G   + +   
Sbjct: 563 SLPSARGLGE--------PLSSKLSPASGVGFKQVFIADDETEVMALSSKGYGFKTQAKQ 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                ++GK  + L  +  ++ + +  Q   + L T  G+ +   +S + V       G 
Sbjct: 615 LDTNAKAGKAFLTLPEKATVMPLTSVDQATHLALLTSTGRLLILELSELPVLN--KGKGN 672

Query: 725 RGISLAKGDQVISM 738
           + I L + DQ++ M
Sbjct: 673 KLIQLEEKDQIVFM 686



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 73/188 (38%), Gaps = 12/188 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G  V   +L    GDQ +S A        Y        +  A   L S        
Sbjct: 515 RSAKGHEVDAENLNFRAGDQYLSHAQGKSNQRVYVLDESGRSYALAINSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G   ++    +   E  ++ +S KG+G +T +     + ++GK         
Sbjct: 575 SSKLSPASGVGFKQVF--IADDETEVMALSSKGYGFKTQAKQLDTNAKAGKAFLTLPEKA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
                 ++ +  V+    + L++  G L+ + ++E+ + ++  KG  +    + +++V +
Sbjct: 633 T-----VMPLTSVDQATHLALLTSTGRLLILELSELPVLNK-GKGNKLIQLEEKDQIVFM 686

Query: 895 ERIRESEI 902
            R+   EI
Sbjct: 687 TRLTLDEI 694


>gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
 gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066]
          Length = 771

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 246/822 (29%), Positives = 405/822 (49%), Gaps = 71/822 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E     ++   +GI  + +    +N+YL Y++NVI  RA+P + DG+KPV RRI++ M
Sbjct: 1   MSETT-DKNKLSLEGIEQMPLERFAENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+VK AR  GEV+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G V
Sbjct: 60  AKLGIGPKAKHVKSARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDV 119

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            D    AA RYTE RL   +  LL DL    VDF PN+DG+ +EP  L AR PN+L+NG 
Sbjct: 120 EDPKSFAAMRYTESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGT 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIK 238
            GIAVGMAT+IP HNL EV +  V +++NP+  ++ LM+ ++GPD+P GA  I  ++ + 
Sbjct: 180 TGIAVGMATDIPPHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLL 239

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y TG+G +  R V  +EK     E IVV+ +P+QV+   + ++IA+L+ +K++  ++D
Sbjct: 240 KMYETGKGIVRQRAVYKVEK-----EGIVVSALPFQVSGGQVEKQIADLMAKKKLPMVSD 294

Query: 299 LRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           L + SD     R++I  +      D ++N L+  T L+S + VN+  L    KP+   L 
Sbjct: 295 LINASDHNNPCRLIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDGKPQVKNLK 354

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            IL  ++ FR++ V +R    L+    R H+L GL +   NLDEV+RIIR   NP   + 
Sbjct: 355 QILSEWLVFRQQTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENP---KA 411

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           +L++R                            L+E Q   ILE +L +L  L    I+ 
Sbjct: 412 KLIER--------------------------FNLTEAQVEYILETKLRQLARLEEMKIKE 445

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCI 533
           E   L  E K+   +L S++RL   IK+E+L+        RR  +VE        ++D +
Sbjct: 446 EQEKLLAEKKKLESLLGSQARLKTFIKKEILADVKLYGDERRCPVVERSEAVAFSEDDLM 505

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
               + V +S +G+V        R           +  R  D   D     ++   +F +
Sbjct: 506 PSTPVTVILSKMGWV--------RQASEYNADAEHMTYRAGDGFKDKASGRSNQQAVFIT 557

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           +LG  Y   +  LP    + +G+ L + ++L QGE    ++         +N Y + A+ 
Sbjct: 558 NLGRAYSVDIRELPSA--RGQGEPLSSKVNLQQGEFAEYVI------IGQSNDYFLLASD 609

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPIS 711
                  K  D +   + G+  + LD+  ++ +    + +  + + + ++ G+ + +   
Sbjct: 610 KAYGFICKYEDILTRLKGGRALVSLDADAKLFAPIKLSDKSSDLLAVASRQGKLLIYKAE 669

Query: 712 AIRVFAGRNSVGVRGI-----SLAKG-DQVISMAIVLHADADYD---ERICYMKHMSAQR 762
            + V       G + I      L  G D V ++A++    +      +RI  +       
Sbjct: 670 DLPVLP--RGKGNKLISIAGAKLDMGIDGVAAVAVLPEGSSIIIHCGKRILNLSASEITE 727

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
           RL        T  +    V+     +       ++  IL  S
Sbjct: 728 RLSVRTKRGDTLPRGFQKVDCIEVVKAKTNSSEEDPAILEFS 769


>gi|281429788|gb|ADA70033.1| DNA gyrase subunit A [Bacillus sp. NK-2]
          Length = 341

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/340 (57%), Positives = 266/340 (78%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G
Sbjct: 121 ILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS 
Sbjct: 181 VLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A 
Sbjct: 241 GKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAH 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           VILN LY+ T+LQ+ F +N++AL   +P+  +L   L+ +
Sbjct: 301 VILNNLYKQTALQTSFGINLLALVDGQPKVLSLKQCLEHY 340


>gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
 gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624]
          Length = 739

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 224/737 (30%), Positives = 366/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             +EK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YSVEKHE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTT 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + I 
Sbjct: 619 AKAGKTFLTVPEKSKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEAKEQILSMTTLNLDE 693



 Score = 40.9 bits (94), Expect = 0.98,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               S   G    +    L   E  ++  S  G+G +T +     + ++GK      V +
Sbjct: 575 SSKLSPASGVSFIQVY--LDDDESELIAASSAGYGFKTQTKQLDTTAKAGK--TFLTVPE 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++   L++   +     + ++S  G L+ + + E+   ++  KG  +      E+++S+
Sbjct: 631 KSKALPLISAQNMT---HLAVLSSAGRLLILDLAELPNLNK-GKGNKLIQLEAKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
 gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37]
          Length = 759

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/797 (29%), Positives = 395/797 (49%), Gaps = 68/797 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G+  + +T   + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  EGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELGLSALSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   +  LL ++   T D++PN+DG+ +EPV+L AR P++L+NG  GIAVGMAT+IP
Sbjct: 129 ESRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  +ID+P  +L  LM  ++GPD+PT   +I   + IK  Y TGRGS   
Sbjct: 189 PHNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYETGRGSFKS 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V  +E        IV+T +P++V+   +L++IA+ +++K++  IADLRDESD +   R
Sbjct: 249 RAVYTVENGE-----IVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDESDHENPTR 303

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI  +      + +++ L+  T L+    VN+  L    +P+   L+ IL  ++ +R +
Sbjct: 304 LVIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILNEWLVYRMK 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR ++ L+K   R H+L GL  A  N+DEV+ IIR   +   A+ ELM R       
Sbjct: 364 TVRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTCDD---AKAELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LS +Q  AILE++L +L  L    IR E+++L  E  + 
Sbjct: 414 -------------------FELSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
             +LSS  RL  ++K+E+ +   +    RR+ ++E +      +++ +  E + V +S  
Sbjct: 455 ERLLSSERRLNTLVKKEIQADALKYGDDRRSPLIERIEAKALTEKELMPSETVTVVLSTQ 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R+ +        +  +  D         ++ S +F  + G  Y   V  
Sbjct: 515 GWV--------RSAKGLDVDAQALNYKSGDEFLTKAQGRSNQSCIFIDASGRAYSLDVHS 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    Q           L         +PF       ++   + ++ HG     K SD 
Sbjct: 567 LPSARSQGE--------PLTGRFNQNENVPFVCALIGDDDDRYLISSDHGYGFIAKFSDI 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
              N++GK  + L    +++  +  T   ++  L  +  G+ + FP++++   +     G
Sbjct: 619 NSRNKNGKTLINLTPNAQLMPPKKMTAADDDWCLTISNEGRLLLFPVNSLPSLS--KGKG 676

Query: 724 VRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            R +++      K ++ ++M  ++   +         K       L+    E        
Sbjct: 677 NRMLNIISAKATKREEFVTMLEIIPQASSVTLHAGKRKLTLKPSDLVHYQGERGRRGSKL 736

Query: 779 SSVEGNISEERCQELKL 795
                 + +    E   
Sbjct: 737 PRGLQRVDKIEIIEAAQ 753


>gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF]
 gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
 gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii]
 gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC
           19606]
          Length = 739

 Score =  521 bits (1342), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 366/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126]
          Length = 761

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/818 (29%), Positives = 399/818 (48%), Gaps = 73/818 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ II        G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDEIII----NRDGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  N KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SDLGLSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L + +  LL++LG+ TVD+ PN+DG+  EP VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEAKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+ + C  ++DN   +L  ++E + GPD+PT   +I  ++ I
Sbjct: 176 VTGIAVGMATDIPPHNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TGRGSI +R V   E        +V+T +P+Q + A +LE+IA  ++ K++  ++
Sbjct: 236 QKLYETGRGSIKMRAVYMEENGD-----VVITALPHQASGAKILEQIAAQMQAKKLPMVS 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +        ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DLRDESDHENPTRLVITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ +R++ V RR +Y L+K   R H+L GL IA  N+DEV+ IIR    P   +
Sbjct: 351 RTILSEWLQYRKDTVTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AILEL+L  L  L    I+
Sbjct: 408 PELMAR--------------------------FGLSDTQAEAILELKLRHLAKLEEMKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +L S  RL  +IK+E+L+  ++    RR+ IVE        +++ 
Sbjct: 442 GEQDELAEERDKLQQLLGSDRRLKTLIKKEILADAEKYGDDRRSPIVERGEAKALSEKEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+         R  +       G+  +  D         ++   +F 
Sbjct: 502 VPAESVTVVLSEKGWA--------RCAKGHDIDAEGLSYKAGDAYLSSAEGKSNQPAVFM 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ L    S+  GE    ++       + +    +  +
Sbjct: 554 DSSGRTFSCDAHGLPSA--RSQGEPLTGRFSIVGGESFQHVI------MAQDESKFLVGS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  +++     T    +  L  +  G+ + FP+
Sbjct: 606 DAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSDWCLSISNEGRMLMFPL 665

Query: 711 SAIRVFAGRNSVGVRGISL------AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
             +         G + I++      ++ + V  +A+V    A           ++A    
Sbjct: 666 RDLPSLG--KGKGNKLINIPSAKSQSREEYVKVLAVVPDGAAIKVGAGKRNMTLTADDLT 723

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                      K    ++   + E     K +    L+
Sbjct: 724 HYQGERGRRGNKLPRGLQRVDTVEVVLPSKDETSEDLS 761


>gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021]
 gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21]
          Length = 747

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 233/729 (31%), Positives = 374/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  +  I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDP---KTELMAR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + +    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESEMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLNYKAGDSYRAHACGKSNQAVVFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MAGEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPKTLINSTALVIAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKIITI 678



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
               +  ++Q +L  S+ G+G      D    N++GK + +   +             +N
Sbjct: 587 EYVVMAGEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPK----TLIN 642

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               +I ++  G ++  P  ++ + S+  KG  I 
Sbjct: 643 STALVIAITSAGRMLIFPAQDLPVLSK-GKGNKII 676


>gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
 gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024]
          Length = 739

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 365/741 (49%), Gaps = 61/741 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV+ G +A+I NP    + L E I  PD PT   +I     +     TGRGS  
Sbjct: 185 PPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   
Sbjct: 245 MRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFRE 366
           R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R+
Sbjct: 300 RLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRK 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+               
Sbjct: 360 KTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK--------------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + E+Q  AILEL+L  L  L   +IR E + L  +   
Sbjct: 405 --------------PVLMDHFKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELSAKAAI 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
             + L +   L  +I  EL     +    RR+ IV       + ++D +  E + V +S 
Sbjct: 451 IREQLENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIREQDLMPAEAVTVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +        +  R  D      +  T+  + F    G  Y   + 
Sbjct: 511 AGWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPIS 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP                L+      + + F +         ++ A+  G   + ++  
Sbjct: 563 SLPSARGLGE--------PLSSKLAPASGVAFIQVYLDDEESELIAASSSGYGFKTQVKQ 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                ++GK  + +  + + L + +      + + +  G+ +   +S +         G 
Sbjct: 615 LDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNLN--KGKGN 672

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + I L   +Q++SM  +   +
Sbjct: 673 KLIQLEAKEQILSMTTLNLDE 693



 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 71/189 (37%), Gaps = 12/189 (6%)

Query: 719 RNSVG--VRGISL--AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G  V   +L    GDQ +S A+       Y        +      L S        
Sbjct: 515 RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPISSLPSARGLGEPL 574

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G    +    L  +E  ++  S  G+G +T       + ++GK      V +
Sbjct: 575 SSKLAPASGVAFIQVY--LDDEESELIAASSSGYGFKTQVKQLDTNAKAGKSF--LSVPE 630

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            ++   L++   +     + ++S  G L+ + ++E+   ++  KG  +      E+++S+
Sbjct: 631 KSKALPLISAQNMT---HLAVLSSAGRLLIIDLSELPNLNK-GKGNKLIQLEAKEQILSM 686

Query: 895 ERIRESEIV 903
             +   EI+
Sbjct: 687 TTLNLDEII 695


>gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
 gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21]
          Length = 747

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/729 (31%), Positives = 372/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P+            
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPK------------ 404

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                            +       LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 405 -----------------VELMARFNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + D    E + V 
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +        +  +  D         ++ +V F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVAFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +   
Sbjct: 612 FEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--K 669

Query: 721 SVGVRGISL 729
             G + I++
Sbjct: 670 GKGNKMITI 678


>gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
 gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617]
          Length = 726

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 230/701 (32%), Positives = 361/701 (51%), Gaps = 62/701 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ P
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 119

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD 
Sbjct: 120 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 179

Query: 216 LMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V   E        +V++ +P+Q
Sbjct: 180 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISALPHQ 234

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTS 332
           V+ A +LE+IA  +R K++  + DLRDESD +   R+VI  +      D ++N L+  T 
Sbjct: 235 VSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTD 294

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   R H+L GL 
Sbjct: 295 LEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLL 354

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           +A  N+DE++ IIR    P+ A                                   L+E
Sbjct: 355 VAFLNIDELIEIIRNEDEPKPA-----------------------------LMSRFGLTE 385

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K+EL +    
Sbjct: 386 TQAEAILELKLRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 445

Query: 512 LDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
               RR+ + E      M + D +  E + + +S +G+V        R+ +       G+
Sbjct: 446 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGL 497

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             +  D         ++  V+F  S G  Y      LP    + +G+ L   L+L  G  
Sbjct: 498 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGAT 555

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL-SVE 688
           +  I+         ++  ++ A+  G       +D +  NR+GK  + L     ++  V 
Sbjct: 556 VDHIL------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 609

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                + +L  T+ G+ + FP+S +   +     G + I++
Sbjct: 610 IEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKIINI 648



 Score = 49.4 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 485 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 542

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 543 PLTGKLTLPPGATVDHILMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 598

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 599 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 652


>gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
 gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4]
          Length = 755

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 241/742 (32%), Positives = 383/742 (51%), Gaps = 67/742 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN  E+VD CV +IDNP +DL+ LME++ GPD+PT   +I  RT I
Sbjct: 176 ITGIAVGMATDVPPHNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  +E        IV+T +P+Q +   +LE+IA  ++ K++  +A
Sbjct: 236 AKIYETGRGSIKARAVYSVESGE-----IVITALPHQASGGKILEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  F VN+  L    +P+   L
Sbjct: 291 DLRDESDHESPVRIVIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L  L IA  N+DEV+ IIR+  +P   +
Sbjct: 351 KQLLTEWLEFRLTTVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L++ Q  AIL+L+L  L  L    I+
Sbjct: 408 AELMSR--------------------------FNLTDEQANAILDLKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E ++   +LSS  R+  +IK+EL    +     RR+ +VE        +++ 
Sbjct: 442 TEQSELEAEREKLELLLSSDRRMKTLIKKELKQDAETYGDERRSPLVERSESRALSEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +      + +  +  D         ++ + +F 
Sbjct: 502 VPAEAVTVVLSEKGWV--------RCAKGHDIDPTALSYKAGDGFLCAASGRSNHATVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +     L+ GE +   +         +    + A+
Sbjct: 554 GSTGRAFATDTHTLPSA--RSQGEPVTTRFQLSPGESMAHALL------GEDGQCFLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  ++L  +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFIGDYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSESILAITNEGRMLLFSV 665

Query: 711 SAIRVFAGRNSVGVRGISLAKG 732
            A+   A     G + I +A  
Sbjct: 666 DALPQLA--KGKGNKIIGIASD 685


>gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica]
          Length = 764

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/813 (29%), Positives = 384/813 (47%), Gaps = 72/813 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDT----DTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EP+VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV   C  ++D P  +LD L+E++  PD+PT   +I  +  I
Sbjct: 176 VTGIAVGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI +R V   E        IV+T +P+Q + A +LE+IA  +  K++  +A
Sbjct: 236 HKIYKTGRGSIKMRAVYTEEHGD-----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     A+ ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V RR ++ L+K   R H+L GL  A  N+DEV+ IIR    P   +
Sbjct: 351 RSILSEWLTFRRETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            L++ Q  AILEL+L  L  L    IR
Sbjct: 408 PVLMER--------------------------FDLTDTQAEAILELKLRHLAKLEEFKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +    L S  R+  ++K+E+    D     RR+ ++E +      ++D 
Sbjct: 442 GEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEAADMYGDDRRSPVIERVEAKALSEKDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  R  D         ++   +F 
Sbjct: 502 IPSESVTVVLSDKGWA--------RVGKGHDIDVEGLNYRAGDEYKASAKGKSNQPAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L  G        F       +N  ++ A+
Sbjct: 554 DSAGRAFATDAHSLPSA--RSQGEPMTGRFNLTTGA------NFEHVVMGEDNQVLLMAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + +     +LS         +  +  +  G+ + FP+
Sbjct: 606 DAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVATDYCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
             +         G + I      +   ++ + +  V+   +         K       L 
Sbjct: 666 RDLPKLG--KGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLHAGKRKLTLKPSDLE 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
               E              + E   +     EQ
Sbjct: 724 HYHGERGRRGNKLPRGLQRVDEAVVEFTPADEQ 756



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 69/192 (35%), Gaps = 25/192 (13%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R   G    V G++   GD+  + A                   +    L S  ++    
Sbjct: 518 RVGKGHDIDVEGLNYRAGDEYKASAKGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPM 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G  +      +    Q +L  S+ G+G  T   D    N++GK + +     
Sbjct: 578 TGRFNLTTG--ANFEHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSV---- 631

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             + G L++   VND   D  + +S++G ++  P+ ++    +           K  +++
Sbjct: 632 -PKGGILLSPIRVNDVATDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKII 680

Query: 893 SV--ERIRESEI 902
           S+   +++  E 
Sbjct: 681 SIPGAKVQAREE 692


>gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
 gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2]
          Length = 768

 Score =  521 bits (1341), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/748 (31%), Positives = 384/748 (51%), Gaps = 68/748 (9%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +GI  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K
Sbjct: 10  QGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSAAKYKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAAD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ T D+ PN+DG+  EP+VL AR P++L+NG  GIAVGMAT+IP
Sbjct: 129 EARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HN+ EV   C  ++DNP  +L+ L+E ++ PD+PT   +I  R+ I+  Y TG+GSI +
Sbjct: 189 PHNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQTGKGSIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R +   E+       IV+T +P+Q +   +LE+IA  ++ K++  +ADLRDESD +   R
Sbjct: 249 RAIYTEEQGD-----IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDESDHENPTR 303

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +VI  +      + ++  L+  T L+  + VN+  L    +P+   L  IL  ++ FR E
Sbjct: 304 IVIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNGRPQVKDLKTILSEWLIFRRE 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P   +  LM+R       
Sbjct: 364 TVRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKP---KPVLMER------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                ++++Q  AILEL+L  L  L    IR E + L  E  + 
Sbjct: 414 -------------------FGITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
              L S  R+  +IK+E+    +     RR+ ++E        ++D I  E + V +S  
Sbjct: 455 ELTLGSERRMSTLIKKEIQEAAELYGDDRRSPVIERAEAKALSEKDLIPSEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+         R  +      + +  R  D    L    ++  V+F  S G  +      
Sbjct: 515 GWA--------RCAKGHDIDAAALSYRAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHS 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +++G+ +    +++ G      + F        +   + A+  G       +D 
Sbjct: 567 LPTA--RSQGEPMTGRFNMSTG------VNFEHVVMGELDAMFLMASDAGYGFVASFADL 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK  + L +  +++S         ++ L  +  G+ + FP+  +         G
Sbjct: 619 VSKNKNGKALVSLSTGAQLISPIKVNDITTDNCLAISNEGRMLMFPLRDLPKLG--KGKG 676

Query: 724 VRGISL-----AKGDQVISMAIVLHADA 746
            + IS+        ++ +S+  V+  ++
Sbjct: 677 NKIISIPSARAKTREEFVSVIAVVPKES 704



 Score = 42.1 bits (97), Expect = 0.49,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 60/179 (33%), Gaps = 16/179 (8%)

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
             GD+  ++A                   +    L +  ++        +   G      
Sbjct: 533 RAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHSLPTARSQGEPMTGRFNMSTGV--NFE 590

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
              +   +   L  S+ G+G   S  D    N++GK + +           L++   VND
Sbjct: 591 HVVMGELDAMFLMASDAGYGFVASFADLVSKNKNGKALVSLSTGA-----QLISPIKVND 645

Query: 850 --NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK------DERVVSVERIRES 900
              D  + +S++G ++  P+ ++    +  KG  I S         +E V  +  + + 
Sbjct: 646 ITTDNCLAISNEGRMLMFPLRDLPKLGK-GKGNKIISIPSARAKTREEFVSVIAVVPKE 703


>gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8]
 gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8]
          Length = 761

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/756 (30%), Positives = 370/756 (48%), Gaps = 71/756 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   ++ ++ EE     +V I +  + +YL YA++V+ GRA+P + DG KPV RRIL+ M
Sbjct: 1   MDTSMLENNNEEN----AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G V+G YHPHG+++ Y+A  R+AQD++LR  LI+GQGNFGS 
Sbjct: 57  KEMGLVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF+ NYDG+FQEPV+L AR P +L+NG  
Sbjct: 117 DGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT I  HN+ E+ +  + ++DNP+      M+ + GPDFP G   I     I +
Sbjct: 177 GIAVGMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADILS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            Y TGRGS+ +R    +E  +  + +I++ E+P+ V+   + ++I  +   K   D    
Sbjct: 237 TYETGRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKTI 296

Query: 298 ---------------DLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNM 341
                          D      ++  R++IE K    S+D ++  L  +TS++    VNM
Sbjct: 297 DQDQLLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNM 356

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  +I ILK ++AFR  VV RR ++ L+K   R H+L G  IA  ++DEV
Sbjct: 357 VMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEV 416

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +++IR S  P+T                                    LSE+Q   ILE+
Sbjct: 417 IKVIRNSDEPKT-----------------------------DLIAAFQLSEIQAEDILEI 447

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E      IL S ++L  +  +E+    ++    RRT I
Sbjct: 448 RLRQLARLEGFKIEKELKDLREEADGLQTILGSDTKLRRLTAKEIKQDAEKYGDDRRTLI 507

Query: 521 VEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                     +  +V E + + +S  G++        RA++  G  R  +  +  D    
Sbjct: 508 EPVERVQGGQKAFVVDEPVTILLSKNGWI--------RARQGHGVERDAISWKAGDSEFA 559

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   ++   S G  Y      +P G     G  L +I+ +  G ++   +   + 
Sbjct: 560 VIETRTTLPIVLLDSNGRCYAFDASTVPGGKGD--GIPLSSIIEVQNGAKLVHALSGKD- 616

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
               ++ Y+ FAT +       L   +   ++GK  MK + +  IL          +++T
Sbjct: 617 ----DDRYL-FATSNSYGFIAPLKGLVARPKAGKAFMKPEGKATILPPLALDDRTHLVVT 671

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +   + + F ++ +  +      GVR + +     +
Sbjct: 672 SSENKLLVFAVTEMNEYPN-GGKGVRIMDIPDNASL 706


>gi|255570742|ref|XP_002526325.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534352|gb|EEF36061.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 540

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/403 (52%), Positives = 286/403 (70%), Gaps = 4/403 (0%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            S+   +  +    +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+ 
Sbjct: 100 DSNGGRDARVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLS 159

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
             K + KCAR+ GEV+GK+HPHG++A+YDAL RMAQD+SLR  LI+G GNFGS+D DPPA
Sbjct: 160 SRKPFKKCARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPPA 219

Query: 127 AERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           A RYTECRL+      LL DL  DTVDF PN+D S +EP +L AR P +L+NG  GIAVG
Sbjct: 220 AMRYTECRLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVG 279

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNLGE+VD   A+I NP+  L  L+E + GPDFPTG +I+G  GI  AY TGR
Sbjct: 280 MATNIPPHNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIMGNLGILEAYRTGR 339

Query: 246 GSIVIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G I++RG + +E   +   R  +++ EIPYQ NKA+++EKIAELV  K +  ++D+RDES
Sbjct: 340 GRIIVRGKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDES 399

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR G R+VIE+KRG+   ++LN LYR T LQS FS NMV +   +P++  L  +L+A   
Sbjct: 400 DRSGMRIVIEVKRGSDPSIVLNNLYRLTPLQSSFSCNMVGILDGQPKQMGLKDLLQASY- 458

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           FR  VV RR ++ L +A++R H++ G+ I + NLD V+RII+ 
Sbjct: 459 FRCSVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKE 501


>gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3]
 gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3]
          Length = 757

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/737 (30%), Positives = 378/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN  E+V  C+ ++DNP  DL  +ME + GPD+PT   +I   + I
Sbjct: 176 ITGIAVGMATDVPPHNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  IE        +V+T +P+Q +   +LE++A  ++ K++  + 
Sbjct: 236 SKIYTTGRGSIKARAVYKIENGE-----VVITALPHQASGGKILEQVAAQMQAKKLPMVV 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+V+  +      D ++  L+  T L+  F VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPVRIVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ +R + V RR ++ L+K   R H+L  L  A  N+DEV+ IIR+  NP   +
Sbjct: 351 KQILTEWLEYRFQTVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            L+++Q  AIL+L+L  L  L    I+
Sbjct: 408 AELMSR--------------------------FNLTDIQADAILDLKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +LSS  R+  +IK+EL+   +     RR+ +VE        +++ 
Sbjct: 442 GEQSELEAERDKLQLLLSSDRRMKTLIKKELIQDGETYGDDRRSPLVERGESKALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D         ++   +F 
Sbjct: 502 APVEAVTVVLSEKGWV--------RCAKGHDIDAKALSYKSGDGFLCSAAGRSNQPSVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +  +   LP    +++G+ +    +L+ GE +  ++         ++ + + A+
Sbjct: 554 GSTGRAFATETHTLPSA--RSQGEPITTRFNLSPGEVMEHVLL------GDDDKFYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  +++  +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIVPQIVDKSKVESILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 EALPQLS--KGKGNKII 680


>gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301]
 gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301]
          Length = 761

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 243/802 (30%), Positives = 385/802 (48%), Gaps = 74/802 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M   ++ ++ EE     +V I +  + +YL YA++V+ GRA+P + DG KPV RRILF M
Sbjct: 1   MDTSMLENNNEEN----AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ G V+G YHPHG+++ Y+A  R+AQD++LR  LI+GQGNFGS 
Sbjct: 57  KEMGLIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGSR 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF+ NYDG+FQEPV+L AR P +L+NG  
Sbjct: 117 DGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGAS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKN 239
           GIAVGMAT +  HN+ E+ +  + V+DNPD      M+ + GPDFP G   I     I +
Sbjct: 177 GIAVGMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADILS 236

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA-- 297
            Y TGRGS+ +R    +E  +  + +I++ E+P+ V+   + ++I  +   K   D    
Sbjct: 237 TYETGRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKTI 296

Query: 298 ---------------DLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNM 341
                          D      ++  R++IE K    S+D ++  L  +TS++    VNM
Sbjct: 297 DQDQLLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVNM 356

Query: 342 VALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           V +    +P +  +I ILK ++AFR  VV RR ++ L+K   R H+L G  IA  ++DEV
Sbjct: 357 VMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDEV 416

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +R+IR S  P+T                                    LSE+Q   ILE+
Sbjct: 417 IRVIRNSDEPKT-----------------------------DLIAAFQLSEIQAEDILEI 447

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L  L    I  EL  L  E     +IL S ++L  +  +E+    ++    RRT I
Sbjct: 448 RLRQLARLEGFKIEKELKDLREEADGLQNILGSDNKLRKLTAKEIKQDAEKYGDNRRTLI 507

Query: 521 VEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                     +  +V E + + +S  G++        RA++  G  R  +V +  D    
Sbjct: 508 EPVERVQGGQKAFVVDEPVTILISKNGWI--------RARQGHGVERESIVWKSGDGEFA 559

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +    T   ++   + G  Y      +P G     G  L +I+ +  G ++   +   + 
Sbjct: 560 VIETRTVLPIVLLDTNGRCYAFDASTVPGGKGD--GIPLSSIIEVQNGAKLAHALSGKD- 616

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
               ++ Y+ FAT +       L   +   ++GK  MK +    IL      +   + +T
Sbjct: 617 ----DDRYL-FATSNSYGFVAPLKGLVARPKAGKAFMKPEDGALILPPIKLDERTHVAVT 671

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           +   + + FPIS +  +      GVR + +       S++ +  +D      I   K   
Sbjct: 672 SSENKFLVFPISEVNEYPN-GGKGVRMMDIPDK---ASLSRIELSDGLSANVIIRGKVKV 727

Query: 760 AQRRLISGDTEEITSLKNDSSV 781
            +   +S    +     +D   
Sbjct: 728 LEGEALSKFLLKRARKGHDVKE 749


>gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
 gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5]
          Length = 771

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 227/777 (29%), Positives = 376/777 (48%), Gaps = 81/777 (10%)

Query: 1   MTEHIISSDEE--EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M+  I ++ +     + + + S+ +  + +YL YA+ VI+ RA+P++ DGLKPV RRI++
Sbjct: 1   MSNVIDNTLDPILANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVY 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G++   K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI GQGN+G
Sbjct: 61  AMSELGLKSTAKAKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWG 120

Query: 119 SVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           S D DP   AA RYTE ++   A+ LL +LG+ TVD++ N+DG+  EP  L AR PN+L+
Sbjct: 121 SPD-DPKSFAAMRYTEAKMSAYANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILL 179

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRT 235
           NG  GIAVGMAT+IP HNL EVV   + ++ NP++ +  L + I  PD PT   +I  + 
Sbjct: 180 NGTTGIAVGMATDIPPHNLNEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKK 239

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            ++  Y TGRGS  +R   HI+    +   +++  +PYQV+   + E+IA+L+ +K++  
Sbjct: 240 DLQAIYETGRGSYKMRATFHIDPKEKNL--VIINALPYQVSGNKIQEQIAKLMTDKKLPW 297

Query: 296 IADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           I D+ DESD +   R+V+ELK        +++ L+  T L+S + VNM  +    KP+  
Sbjct: 298 IVDIHDESDHENACRIVLELKSTRVDVQRVMSHLFASTDLESNYRVNMNMIGLNGKPQVK 357

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  IL+ ++  R  VV RR +Y L+K   R H+L GL IA  N+DEV+RIIR   +P+ 
Sbjct: 358 NLKEILEEWLVCRRSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPK- 416

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                                       +       L+E+Q  AIL++RL +L  L   +
Sbjct: 417 ----------------------------LSLMQDYDLTEIQANAILDIRLRQLAKLEEIE 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R E + L  E     + L +   L  ++  EL +   E    R +++ E       ++ 
Sbjct: 449 LRREQDELAAERAIIQEYLDNPDSLTNLMIDELTADMKEHGNERVSQLAEREEAQALKES 508

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D +  E +   +S  G++        RA +      +G+  R  D          +  + 
Sbjct: 509 DLVPSEPVTAILSKAGWI--------RAAKGHDVDAAGMAYRSGDSYQAHVRAKANEKIY 560

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
              S G  Y      L     Q           L    +      F +  +  N+  ++ 
Sbjct: 561 VLDSTGRSYSIDAHSLASARGQGD--------PLTSVLKPPAGATFEQLLTGDNDQRIIL 612

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE----------------- 693
           A+  G    N + +     ++GK  + L +   +L +     +                 
Sbjct: 613 ASSQGYGFINTIGNLDSNQKAGKNIINLAADSRLLPIARIDAQTEVIVSSENNGIPASEN 672

Query: 694 ----NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
               + I + T  G  + F +  +     R   G + I+L   ++V+++  +   D+
Sbjct: 673 SSTLDHIAVVTNAGYLLIFALDDL-PEQARG-KGNKMINLKGDEEVLTITPLSKHDS 727



 Score = 42.9 bits (99), Expect = 0.25,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 81/249 (32%), Gaps = 30/249 (12%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG--ISLAKGDQV--IS 737
           DE+ +         +    +  +      S +       ++  +   I  AKG  V    
Sbjct: 479 DELTADMKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKAGWIRAAKGHDVDAAG 538

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           MA           R    + +          + +  SL +       ++           
Sbjct: 539 MAYRSGDSYQAHVRAKANEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATF 598

Query: 798 QFILT---------VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI-------NEIGAL 841
           + +LT          S +G+G   +  +   + ++GK I               +    +
Sbjct: 599 EQLLTGDNDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAADSRLLPIARIDAQTEV 658

Query: 842 VAV-----FPVNDN----DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           +        P ++N    D I +V++ G L+   ++++   +R  KG  + +   DE V+
Sbjct: 659 IVSSENNGIPASENSSTLDHIAVVTNAGYLLIFALDDLPEQARG-KGNKMINLKGDEEVL 717

Query: 893 SVERIRESE 901
           ++  + + +
Sbjct: 718 TITPLSKHD 726


>gi|119390532|pdb|2NOV|A Chain A, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390533|pdb|2NOV|B Chain B, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390534|pdb|2NOV|C Chain C, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|119390535|pdb|2NOV|D Chain D, Breakage-Reunion Domain Of S.Pneumoniae Topo Iv: Crystal
           Structure Of A Gram-Positive Quinolone Target
 gi|224036402|pdb|3FOE|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036403|pdb|3FOE|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036410|pdb|3FOF|A Chain A, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|224036411|pdb|3FOF|B Chain B, Structural Insight Into The Quinolone-Dna Cleavage Complex
           Of Type Iia Topoisomerases
 gi|262118792|pdb|3K9F|A Chain A, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|262118793|pdb|3K9F|B Chain B, Detailed Structural Insight Into The Quinolone-Dna
           Cleavage Complex Of Type Iia Topoisomerases
 gi|295789386|pdb|3KSA|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789387|pdb|3KSA|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Cleaved Form)
 gi|295789394|pdb|3KSB|A Chain A, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789395|pdb|3KSB|B Chain B, Detailed Structural Insight Into The Dna Cleavage Complex
           Of Type Iia Topoisomerases (Re-Sealed Form)
 gi|295789470|pdb|3LTN|A Chain A, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
 gi|295789471|pdb|3LTN|B Chain B, Inhibitor-Stabilized Topoisomerase Iv-Dna Cleavage Complex
           (S. Pneumoniae)
          Length = 496

 Score =  520 bits (1340), Expect = e-145,   Method: Composition-based stats.
 Identities = 212/508 (41%), Positives = 315/508 (62%), Gaps = 26/508 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I ++S+ D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K
Sbjct: 2   SNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE 
Sbjct: 62  SAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL + A +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP H
Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NL EV+D  V +ID+P   +D LME + GPDFPTGA+I GR  IK AY TG+G +V+R  
Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IEK  G +EQIV+TEIPY++NKA +++KI ++    ++  IA++RDESDR G R+ IE
Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LK+ A+ +++LN L++YT LQ  ++ NMVA++ + P +  ++ IL +++A R EV++ R+
Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARS 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  R H++ GL   ++ LDEV+ +IR S N   A+  L                
Sbjct: 362 RFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENL---------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                       +   +E Q  AI+ L+L RLT      ++ E   L  +I     I+  
Sbjct: 406 ----------KVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGD 455

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIV 521
              +  ++K+EL  VK +  TPR + + 
Sbjct: 456 ERTMYNLMKKELREVKKKFATPRLSSLE 483


>gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
 gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14]
          Length = 747

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 363/742 (48%), Gaps = 67/742 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K AR
Sbjct: 13  EQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSAR 72

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE +
Sbjct: 73  TVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTESK 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P HN
Sbjct: 132 LTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           L E+V   + ++DNP+  +  L E ++GPD+P+ A I+   + ++N Y TG GS+  R  
Sbjct: 192 LNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYETGNGSVRARAT 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD     RVV+
Sbjct: 252 FTKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVL 306

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +     A+ ++  L+  T ++  + VN+  +    +P+   L  +L  ++ FR   V 
Sbjct: 307 VPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVT 366

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A                 
Sbjct: 367 RRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA----------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q   ILE +L +L  L    IR E + L  E ++ L I
Sbjct: 410 ------------LIARFGLSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L S+++L  +I+ EL +   +    RR+ +V+      +++ + +  E M V +S  G++
Sbjct: 458 LDSKAKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      S +  RD D +       +   V F  S G  Y   V  LP 
Sbjct: 518 --------RAAKGHDVDASALSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPS 569

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                      N   L           F    S+      V A+ HG     +  + I  
Sbjct: 570 ARG--------NGEPLTGRFSPAPGTSFVTLASAEPETRFVLASSHGYGFVTRFENLIGR 621

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N++GK  + L +   +L          + I+  T  G  +    + +         G + 
Sbjct: 622 NKAGKAMLNLSAGSSVLIPSVVANVATDRIVAVTSSGNLLAIAANDLPELD--KGKGNKI 679

Query: 727 ISLAK----GDQVISMAIVLHA 744
           I + K     ++V+++  +   
Sbjct: 680 IEIPKAKLATERVVAIVAISPG 701


>gi|284050490|ref|ZP_06380700.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 451

 Score =  520 bits (1339), Expect = e-145,   Method: Composition-based stats.
 Identities = 228/477 (47%), Positives = 312/477 (65%), Gaps = 32/477 (6%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRRIL+ M ++G+  ++ Y KCAR+ G+V+GKYHPHG+ ++
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKYHPHGDQSV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVD 152
           YDAL R+ Q++S R  L+ G GNFGSVD DPPAA RYTE RL    +  LL  +G+ TVD
Sbjct: 61  YDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLATIGNEGLLTQVGEATVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           F  N+D S QEP VL A+ P +++NG  GIAVGMATNIP HNLGEVVDG +A+IDNPD+ 
Sbjct: 121 FTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHNLGEVVDGLIALIDNPDLC 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-----TSGDREQIV 267
              LM++I GPDFPTG  I+   GIK AY +GRGSIV+RGV+ IE+         +  IV
Sbjct: 181 DQKLMQLIPGPDFPTGGEIIATEGIKEAYTSGRGSIVMRGVAKIEQVPTSGRKRTKNAIV 240

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+P+QVNKA  +EK+A LV   ++  I+D+RDESDR+G RVVIELKR A+ +V+L+ L
Sbjct: 241 VTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGIRVVIELKREATPEVVLHNL 300

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y++T L S F    +AL   +P + +L  IL+ F+ FRE+ ++RR +  L  A  R H++
Sbjct: 301 YQHTDLMSKFGAIFLALVNSQPRQLSLKQILEEFLGFREQTLLRRYRSELEIAERREHLV 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL  A++ LDEV+ I+R +P+  +A+  L  R                          +
Sbjct: 361 GGLLKALSALDEVIDILRNAPDGSSAKMSLETR--------------------------L 394

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
             S  Q  AIL + L RLTGL    ++ E   L  +I+    +LS RS LL  +K+E
Sbjct: 395 DFSTEQADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLKKE 451


>gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 751

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 234/729 (32%), Positives = 374/729 (51%), Gaps = 62/729 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ TVDF+PN+DG+ +EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ EV D  V ++DNP + LD ++ II+GPDFPT   +I  +  I+  Y TGRG
Sbjct: 182 TDIPPHNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R   H E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWHKEDGE-----IIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ +L  ++ 
Sbjct: 297 NPVRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLTEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR ++ L+K   R H+L GL IA  N+DEV+ IIR    P+            
Sbjct: 357 FRRTTVTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQ----------- 405

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L    ++ E + L  E
Sbjct: 406 ------------------VLMARFNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVT 541
                 IL S  RL  +IK+E+     +  +PR +++VE      + + +    E + V 
Sbjct: 448 RSNLELILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTPAEPVTVI 507

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S +G+V        R  +      +G+  +  D         ++  V+F  S G  Y  
Sbjct: 508 LSEMGWV--------RCAKGHDIDPAGLSYKAGDKYLAHACGKSNQPVIFIDSTGRSYAL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               LP    +++G+ L   L+L  G  I  ++             ++ A+  G     K
Sbjct: 560 DPLSLPSA--RSQGEPLTGKLTLPAGATIEQVI------MEPEKQELLMASDAGYGFICK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRN 720
             D I  N++GK  + L    ++L  E  ++   +L+  T  G+ + FP+  +   +   
Sbjct: 612 FEDLIARNKAGKALISLPENAKVLKPEKLSESASLLVSLTSAGRMLIFPVRDLPALS--K 669

Query: 721 SVGVRGISL 729
             G + IS+
Sbjct: 670 GKGNKIISI 678


>gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
 gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202]
          Length = 739

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 223/741 (30%), Positives = 365/741 (49%), Gaps = 61/741 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +   + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI+F M ++G++ + K  
Sbjct: 6   HQATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNSGKPK 65

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+G+ D DP   AA RY
Sbjct: 66  KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPD-DPKSFAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L   +  LL++LG+ T D++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+I
Sbjct: 125 TEAKLSAYSELLLNELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIV 249
           P HNL EV+ G +A+I NP    + L E I  PD PT   +I     +     TGRGS  
Sbjct: 185 PPHNLREVIKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYR 244

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-Y 308
           +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD     
Sbjct: 245 MRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPT 299

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFRE 366
           R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R+
Sbjct: 300 RLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRK 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+               
Sbjct: 360 KTVTRRLEYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK--------------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + E+Q  AILEL+L  L  L   +IR E + L  +   
Sbjct: 405 --------------PVLMEHFKIDEIQAEAILELKLRHLAKLEEMEIRQEQDELAAKAAI 450

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
             + L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S 
Sbjct: 451 IREQLGNPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLVPAETVTVVLSE 510

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        RA +        +  R  D      +  T+  + F    G  Y   + 
Sbjct: 511 AGWI--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRIYFLDETGRSYALPIS 562

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP                L+      + + F +         ++ A+  G   + +   
Sbjct: 563 SLPSARGLGE--------PLSSKLAPASGVSFIQVYLEDEASELIAASTSGYGFKTQAKQ 614

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                ++GK  + +  + + L + +      + + +  G+ +   ++ +         G 
Sbjct: 615 LDTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNLN--KGKGN 672

Query: 725 RGISLAKGDQVISMAIVLHAD 745
           + I L   +Q++SM  +   +
Sbjct: 673 KLIQLEAKEQILSMTTLNLDE 693


>gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU]
 gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii
           ACICU]
          Length = 739

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 364/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP      L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   +  +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900]
          Length = 739

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   +  +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia
           R551-3]
 gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 747

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 231/742 (31%), Positives = 363/742 (48%), Gaps = 67/742 (9%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M ++G+    K  K AR
Sbjct: 13  EQLPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSAR 72

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RYTE +
Sbjct: 73  TVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRYTESK 131

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LL +LG+ T D+ PN+DG+ QEP  + AR P++L+NG  GIAVGMAT++P HN
Sbjct: 132 LTPIAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHN 191

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           L E+V   + ++DNP+  +  L E ++GPD+P+ A I+     ++N Y TG GS+  R  
Sbjct: 192 LNEIVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYETGNGSVRARAT 251

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        IVVT +P+QV+ + ++E+IA  +R K++  + D+RDESD     RVV+
Sbjct: 252 FTKE-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVL 306

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +     A+ ++  L+  T ++  + VN+  +    +P+   L  +L  ++ FR   V 
Sbjct: 307 VPRSNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVT 366

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR ++ L K   R H+L GL +A  NLDEV+ IIR    P+ A                 
Sbjct: 367 RRLQHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAA----------------- 409

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             LS+ Q   ILE +L +L  L    IR E + L  E ++ L I
Sbjct: 410 ------------LIARFGLSDDQAEYILETKLKQLARLEEMKIRGEQDELAKEREKILGI 457

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYV 548
           L S+++L  +I+ EL +   +    RR+ +V+      +++ + +  E M V +S  G++
Sbjct: 458 LDSKTKLKKLIRDELTADAKKFGDARRSPLVQRQAAQAIDETELVPSEPMTVVMSEKGWI 517

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +      S +  RD D +       +   V F  S G  Y   V  LP 
Sbjct: 518 --------RAAKGHDIDASTLSYRDGDALQGAVRARSTQQVAFLDSEGRAYSTPVHTLPS 569

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                      N   L           F    S+      V A+ HG     +  + I  
Sbjct: 570 ARG--------NGEPLTGRFSPAAGTSFVTLASAEPETRFVLASTHGYGFVTRFENLIGR 621

Query: 669 NRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
           N++GK  + L +   +L+         + I+  T  G  +    + +         G + 
Sbjct: 622 NKAGKAMLNLSAGSTVLTPSVVANVATDRIVAVTSSGNLLAIAANDLPELD--KGKGNKI 679

Query: 727 ISLAK----GDQVISMAIVLHA 744
           I + K     ++V+++  +   
Sbjct: 680 IEIPKAKLATERVVAIVAISPG 701


>gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
 gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256]
          Length = 769

 Score =  520 bits (1338), Expect = e-145,   Method: Composition-based stats.
 Identities = 239/804 (29%), Positives = 370/804 (46%), Gaps = 79/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EH+       E  +    +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MNEHVSVPSPVGEDYLL---LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 58  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 118 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 178 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 238 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 297

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 298 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 357

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 358 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+T                                    L+E+Q   IL
Sbjct: 418 EVIKVIRESDDPKT-----------------------------DLMAAFGLTEIQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 449 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 509 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 560 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAM 612

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
                   Y++  +  G     KL D +   ++GK+ M +DS + +L             
Sbjct: 613 LTGQPEQHYLLSGS-GGYGFITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I+L +   + + F I  ++V       G++ +SL +G  +  + +   A+   +   
Sbjct: 672 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTEGASLEHVLVTTAAEFIVETVG 729

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   + +     K
Sbjct: 730 KRGAAHQEKLRICDIEGKRGKKGK 753


>gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275]
          Length = 1278

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 235/812 (28%), Positives = 370/812 (45%), Gaps = 77/812 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------D 301
           +  + +++VTE+P   N A +L +I E    K       L                   D
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD     R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +               E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G     G  + +++ L  G +   ++            + + ++  G   
Sbjct: 577 YTLDAAEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +++ A     G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPEILIESEGRRGAAHKDRIPVSLLEAKRG 746

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
              K    + G        ++      I+ +S
Sbjct: 747 KKGKLLPHI-GQPETAFFPQINPIPHIIMVIS 777


>gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
 gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7]
          Length = 765

 Score =  519 bits (1337), Expect = e-145,   Method: Composition-based stats.
 Identities = 237/815 (29%), Positives = 382/815 (46%), Gaps = 72/815 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDT----DTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV   C  ++D P  +LD L+E++  PD+PT   +I  +  I
Sbjct: 176 ITGIAVGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI +R V   E+       IV+T +P+Q +   +LE+IA  +  K++  IA
Sbjct: 236 HKIYKTGRGSIKMRAVYSEEQGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     A+ ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P+   
Sbjct: 351 RSILSEWLIFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+++Q  AILEL+L  L  L    IR
Sbjct: 408 --------------------------PILMQRFDLTDIQAEAILELKLRHLAKLEEFKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +    L S  R+  ++K+E+    +     RR+ ++E        ++D 
Sbjct: 442 GEQDELAKERDKLELTLGSDRRMSTLLKKEIQEAAEMYGDDRRSPVIERSEAKALNEKDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  R  D         ++   +F 
Sbjct: 502 IPSESVTVVLSDKGWA--------RVGKGHDLDAQGLSYRSGDAYRASARGKSNQPAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L  G        F     + ++  ++ A+
Sbjct: 554 DSAGRAFATDAHSLPSA--RSQGEPMTGRFNLTTGA------NFEHVVMAEDSQVLLMAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + +     +L     +    +  +  +  G+ + FP+
Sbjct: 606 DAGYGFITDFKDLVSKNKNGKALVSVPKGGILLKPIRVSDVASDYCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
             +         G + I      +   ++ + +  V+   +         K       L 
Sbjct: 666 RDLPKLG--KGKGNKIISIPGAKVQAREEFVKVLAVVPLGSSVTLHAGKRKLTLKPTDLE 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
               E              + E   +     E+ +
Sbjct: 724 HYHGERGRRGNKLPRGLQRVDEAVVELTPQDEEPV 758



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 19/121 (15%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +      +    Q +L  S+ G+G  T   D    N++GK + +       + G L+   
Sbjct: 587 ANFEHVVMAEDSQVLLMASDAGYGFITDFKDLVSKNKNGKALVSV-----PKGGILLKPI 641

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV--ERIRESE 901
            V+D  +D  + +S++G ++  P+ ++    +           K  +++S+   +++  E
Sbjct: 642 RVSDVASDYCMAISNEGRMLLFPLRDLPKLGK----------GKGNKIISIPGAKVQARE 691

Query: 902 I 902
            
Sbjct: 692 E 692


>gi|84796010|gb|ABC66093.1| DNA gyrase subunit A [Bacillus sp. DAU101]
          Length = 341

 Score =  519 bits (1336), Expect = e-145,   Method: Composition-based stats.
 Identities = 196/340 (57%), Positives = 264/340 (77%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
           + EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV
Sbjct: 1   SQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  
Sbjct: 61  IGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAME 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG
Sbjct: 121 ILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDG 180

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T  
Sbjct: 181 VLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPS 240

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A 
Sbjct: 241 GKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAH 300

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           VILN LY+ T+LQ+ F +N++AL   +P+   L   L+ +
Sbjct: 301 VILNNLYKQTALQTSFGINLLALVDGEPKVLNLKQCLEHY 340


>gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 768

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/804 (29%), Positives = 369/804 (45%), Gaps = 79/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M EH+       E  +    +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MNEHVSVPSPVGEDYLL---LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 58  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 118 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 178 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 238 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQL 297

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 298 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 357

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 358 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 418 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 449 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 509 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 560 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAM 612

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
                   Y++  +  G     KL+D +   ++GK+ M +DS + +L             
Sbjct: 613 LTGQPEQHYLLSGS-GGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SL  G  +  + +   A+   +   
Sbjct: 672 DCKVVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTDGASLEHVLVTTSAEFIVETVG 729

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   D +     K
Sbjct: 730 KRGAAHQEKLRICDIDGKRGKKGK 753


>gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058]
          Length = 739

 Score =  519 bits (1336), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2]
          Length = 739

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9]
 gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9]
          Length = 760

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/772 (29%), Positives = 363/772 (47%), Gaps = 82/772 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+   + D         + +  E   +YL YA++V+ GRA+P++ DG KPV RRIL+ M
Sbjct: 1   MTDLTAAPDS------LPLDLYAE--RAYLEYAMSVVKGRALPEVADGQKPVQRRILYAM 52

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +MG+    K VK AR+ GE++GKYHPHG+++ Y+AL RMAQD++LR  LI+GQGNFGS 
Sbjct: 53  KEMGLAAGAKPVKSARVVGEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSR 112

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP +L AR P VL+NG  
Sbjct: 113 DGDGAAAMRYTEARLTPIADLLLAEIDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGAS 172

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKN 239
           GIAVGMAT IP HNL EV    VA++ +P +D   LM  + GPDFP G  I+     I+ 
Sbjct: 173 GIAVGMATEIPPHNLTEVAAAAVALLKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRA 232

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD- 298
           AY +GRGS+ +R    +EK +  + +++V+E+P   +   +L +I +    K        
Sbjct: 233 AYESGRGSVRVRAQWEVEKLARGQWRVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKAL 292

Query: 299 -----------------LRDESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                            +RDESD     R+V E K    + D  +  L   TS++   S+
Sbjct: 293 SQEQQNLKNLMLSQLDRVRDESDGEHPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSM 352

Query: 340 NMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P++  L  IL  ++ FRE  V RR  + L+K   R H+L G  +   +LD
Sbjct: 353 NLVMVGMDGRPQQKGLKAILSEWLGFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLD 412

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            V+R+IR S  P+                                     LSE+Q   IL
Sbjct: 413 AVIRVIRESDEPK-----------------------------PELMAAFGLSEIQAEDIL 443

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  EL  L  E      +L+S      +I +E+ +   +    RR+
Sbjct: 444 EIRLRQLARLEGFRLEKELGELRDEAGGLRHLLASDHARQKLIIKEIEADAAKYGDRRRS 503

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +            +  E + + +S  G++        RA+       + +  +D D + 
Sbjct: 504 ELK-PAEKATLTQTVADEPVTLILSKKGWL--------RARVGHHVDLATLAFKDGDALA 554

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
            +    T   V+   S G  Y      +P G            + +     +        
Sbjct: 555 AVLETRTVWPVVVLDSHGRAYTVDAADVPTGRGDG--------VPVTSLIDVQEQAQVCH 606

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT----QEN 694
             ++  +   V A   G     ++ D +   ++GK  + L++ +  L+    T       
Sbjct: 607 MLAAPEDARFVVAGSGGYGFVVEMKDMVSRVKAGKAFLTLEAHEIPLAPVPVTAAGLAAG 666

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
            ++  ++  + + FP S ++  A     G+  + L  GD + ++A+V  + A
Sbjct: 667 QLVAISQQARALVFPASELKALA--KGRGLMLMQLDDGDTLETLAVVEGSAA 716


>gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
 gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114]
          Length = 746

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 221/734 (30%), Positives = 365/734 (49%), Gaps = 68/734 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K I    + ++    YL YA++ I  RA+PD+RDGLKPVHRR+++ M  + +    ++ 
Sbjct: 2   SKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQFK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GK+HPHG+ ++YDAL R+AQD+S    L+ GQGNFG+VDGD  AA RYTE
Sbjct: 62  KSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L K + +LL D+ ++TV+F+  YDG   EP +L +++PN+L NG  GIAVGMAT+IP 
Sbjct: 122 TKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIR 251
           HN+ E+ +  + + DNP+  +  L++ I+GPDFPTG ++   +  I  AY TGRG   I+
Sbjct: 182 HNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEIK 241

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
               +E       QI VTEIPY VNK+ ++EK+A ++  K+   +  + DESD +  R+V
Sbjct: 242 SKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK-IRIV 300

Query: 312 IEL-KRGASADVILNQLYRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVV 369
           +    R  + + ++N L+  + L++   +NM  LN   +P+   L  ILK+ +  R  ++
Sbjct: 301 LRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIIL 360

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +  + L K + R  +L G  I   NL+++++IIR S +P+                K+
Sbjct: 361 NNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPK----------------KE 404

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           LI                  + +Q  +ILE+RL  L  +   DI+ E  +L +E K    
Sbjct: 405 LIKK-------------YKFTLIQVDSILEMRLRNLKKIEELDIKKEFKNLELEKKRLSK 451

Query: 490 ILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMEDE---DCIVREDMVVT 541
           IL+S++     I  E   V +E        PRR+ + + +   +DE      V E++ V+
Sbjct: 452 ILNSKTLQRKEINNEYTEVINEFGDNSTYGPRRSILEKFVKFTDDELESKLEVIENINVS 511

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           + +  ++K              KG      ++ D V+ +    T   +   S++G  Y  
Sbjct: 512 LINEKFLK------------SKKGTYKRSEKNSDDVSLIINCKTSDQICLLSNIGKSYIL 559

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               L  G    +G  + + L L   E+        +         ++ ++++G     K
Sbjct: 560 NCSNLKFG--STKGFLISSYLKLKDEEK------IVDLFVYKEKQEIILSSQNGYGFFVK 611

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLG---QCVRFPISAIRVF 716
             D     +SGK    +   D+        +E D  I+L  K     + + F +  +   
Sbjct: 612 SEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNLKYKLIIFELKEVPYL 671

Query: 717 AGRNSVGVRGISLA 730
                 GV      
Sbjct: 672 Q--KGSGVILFKTK 683


>gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
 gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP]
          Length = 748

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/740 (32%), Positives = 385/740 (52%), Gaps = 69/740 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I        +G+  + I    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MTKEI------SYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSM 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ 
Sbjct: 55  SELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAP 114

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L K A  LL++LG+ TVD++PN+DGS  EP  L AR P++L+NG
Sbjct: 115 D-DPKSFAAMRYTESKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNG 173

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    V +++NP   L+ L+ +I+GPD+PT   +I  +  I
Sbjct: 174 TMGIAVGMATDIPPHNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADI 233

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  GRGSI +R V   E+       IV+  +P+Q + + ++E+IA  +R K++  + 
Sbjct: 234 VKMYEQGRGSIKMRAVWKKEENE-----IVIYALPHQASPSKIIEQIATQMRNKKLPLVE 288

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD +   R+V+  +      + +++ L+  T L+  + VNM  +    KP    L
Sbjct: 289 DIRDESDHENPIRIVLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNL 348

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR   VVRR  Y L+K  +R H+L GL  A  N+D+V+ IIR    P   +
Sbjct: 349 VTILTEWLHFRRTTVVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEP---K 405

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            EL++R                            L+ +Q  AIL LRL  L  L    ++
Sbjct: 406 AELIER--------------------------FALTGIQADAILNLRLRHLAKLEEHQLQ 439

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDC 532
            E + L  E  E   +L+S  RL  +IKQE+        +PRR+ ++E      + + D 
Sbjct: 440 AEQHQLEHERNELQRLLASDRRLNNLIKQEIQQDAKAFVSPRRSPLIERAEAKAIAESDL 499

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              ED+ V +S  G+V        R  +       G+  R  D         ++  V+F 
Sbjct: 500 TPTEDITVILSEKGWV--------RCAKGHDIDVQGLSYRAGDGYLAHTRGRSNQPVVFL 551

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP    +++G+ L + +SL +G  I  ++       +     ++ A+
Sbjct: 552 DSTGRAYTIDPTTLPSA--RSQGEPLTSKISLPEGASIQQVL------MANPESKMLMAS 603

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPI 710
             G       +D I  N++GK  + L    +IL  +     ++  I+  + + + + FP+
Sbjct: 604 DAGYGFICTFNDLISRNKAGKAVISLPENAKILVPQWIENSDELSIVAMSTINRMLVFPL 663

Query: 711 SAIRVFAGRNSVGVRGISLA 730
           + +         G + +++A
Sbjct: 664 TELPTLT--KGKGNKIMNIA 681


>gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE]
 gi|294836969|ref|ZP_06781652.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6013113]
 gi|294857647|ref|ZP_06795416.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6013150]
 gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE]
          Length = 739

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
 gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens
           NRL30031/H210]
          Length = 767

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 238/804 (29%), Positives = 369/804 (45%), Gaps = 77/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI +           + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHISAPSPSPVGE-DYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    ++ +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLMIKEMQADMKQYGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 562 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPISSLIELQNGAK-----PIAM 614

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
                   Y++  +  G     KL D +   ++GK+ M +DS + +L             
Sbjct: 615 LTGLPEQHYLLSGS-GGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  ++L +   + + F I  ++V       G++ +SL  G  +  + +   A+   +   
Sbjct: 674 DCKVVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTDGASLEHVLVTTAAEFIVETVG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   D +     K
Sbjct: 732 KRGAAHQEKLRICDIDGKRGKKGK 755


>gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|294840502|ref|ZP_06785185.1| DNA topoisomerase IV subunit A [Acinetobacter sp. 6014059]
 gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056]
 gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059]
 gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057]
 gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 739

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 225/737 (30%), Positives = 365/737 (49%), Gaps = 61/737 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M ++G++ + K  K AR
Sbjct: 10  ENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSAR 69

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +
Sbjct: 70  TVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAK 128

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 129 LSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHN 188

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EVV G +A+I NP    + L E I  PD PT   +I     +     TGRGS  +R V
Sbjct: 189 LREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAV 248

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
             IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+RDESD +   R+VI
Sbjct: 249 YTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVI 303

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVV 370
            L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  IL  ++  R++ V 
Sbjct: 304 VLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVT 363

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+                   
Sbjct: 364 RRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK------------------- 404

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             + E+Q  AILEL+L  L  L   +IR+E + L  +     + 
Sbjct: 405 ----------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQ 454

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           L +   L  +I  EL     +    RR+ IV       ++++D +  E + V +S  G+V
Sbjct: 455 LENPESLKNLIIGELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWV 514

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   RA +        +  R  D      +  T+  V F    G  Y   +  LP 
Sbjct: 515 --------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPS 566

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+      + + F +     +   ++ A+  G   + +       
Sbjct: 567 ARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTN 618

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            ++GK  + +  + + L + +      + + +  G+ +   ++ +         G + I 
Sbjct: 619 AKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLN--KGKGNKLIQ 676

Query: 729 LAKGDQVISMAIVLHAD 745
           L   +Q++SM  +   +
Sbjct: 677 LEGKEQILSMTTLNLDE 693


>gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
 gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102]
          Length = 767

 Score =  518 bits (1335), Expect = e-144,   Method: Composition-based stats.
 Identities = 240/804 (29%), Positives = 370/804 (46%), Gaps = 77/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTEHI +           + +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MTEHISAPSPSPVGE-DYLLLGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 60  RDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 120 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 180 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 240 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 299

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 300 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 359

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 360 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 419

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 420 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 450

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 451 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 510

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 511 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 561

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 562 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAM 614

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQ 692
                   Y++  +  G     KL+D +   ++GK+ M +DS + +L             
Sbjct: 615 LTGQPEQHYLLSGS-GGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYASSLINP 673

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I+L +   + + F I  ++V       G++ +SLA+G  +  + +    +       
Sbjct: 674 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLAEGASLEHVMVTTSPEFTVVSVG 731

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   D +     K
Sbjct: 732 RRGAEHQEKLRIADIDGKRGKKGK 755


>gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE]
          Length = 745

 Score =  518 bits (1334), Expect = e-144,   Method: Composition-based stats.
 Identities = 226/751 (30%), Positives = 368/751 (49%), Gaps = 61/751 (8%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  ++          + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M +
Sbjct: 2   EDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSE 61

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D 
Sbjct: 62  LGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD- 120

Query: 123 DPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DP   AA RYTE +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  
Sbjct: 121 DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTT 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKN 239
           GIAVGMAT+IP HNL EVV G +A+I NP    + L E I  PD PT   +I     +  
Sbjct: 181 GIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLK 240

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
              TGRGS  +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+
Sbjct: 241 IQTTGRGSYRMRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDV 295

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIG 356
           RDESD +   R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  
Sbjct: 296 RDESDHENPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRR 355

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++  R++ V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+     
Sbjct: 356 ILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK----- 410

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           + E+Q  AILEL+L  L  L   +IR+E
Sbjct: 411 ------------------------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHE 446

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIV 534
            + L  +     + L +   L  +I  EL     +    RR+ IV       ++++D + 
Sbjct: 447 QDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMP 506

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V +S  G+V        RA +        +  R  D      +  T+  V F   
Sbjct: 507 AETVTVVLSEAGWV--------RAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDE 558

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  Y   +  LP                L+      + + F +     +   ++ A+  
Sbjct: 559 TGRSYALPISNLPSARGLGD--------PLSSKLSPASGVSFIQVYLDDDESELIAASSA 610

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G   + +        ++GK  + +  + + L + +      + + +  G+ +   ++ + 
Sbjct: 611 GYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELP 670

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
                   G + I L   +Q++SM  +   +
Sbjct: 671 NLN--KGKGNKLIQLEGKEQILSMTTLNLDE 699


>gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
 gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118]
          Length = 796

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 240/761 (31%), Positives = 370/761 (48%), Gaps = 80/761 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-------Y 71
           +++    Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +           
Sbjct: 24  LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           VK ARI G+V+G++HPHG++++YDA  RMAQD+S R  LI+G GNFGS DGD  AA RYT
Sbjct: 84  VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYT 143

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K    LLD++ + TVDF PNYDGS QEP  L AR P  L+NG  GIAVG+AT IP
Sbjct: 144 EARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIP 203

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVI 250
           +HNL EV D C+A+I +P +    L  +I GPD+P G  I+     I  AY +GRGS+  
Sbjct: 204 SHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKC 263

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA------------- 297
           R    IE  +  + ++V+TE+P  V+   +LE+I EL   K                   
Sbjct: 264 RARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATL 323

Query: 298 -----DLRDESDRQ-GYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKP 349
                 +RDES +    R+V E K    +   ++  L  +TSL++   +N+  +    +P
Sbjct: 324 LSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGRP 383

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            + +L  +L  ++AFR++ + RR+++ L K  DR H+L G A+ + N+DEV+ IIR +  
Sbjct: 384 TQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADE 443

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           P+ A                                  +LS+ Q   ILE+RL +L  L 
Sbjct: 444 PKAA-----------------------------LIARFHLSDRQAEDILEIRLRQLARLE 474

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
              I  EL  L  E ++  +IL S S L  ++ +E+ +       PRRT I      +  
Sbjct: 475 AIKIEQELAGLRGEQQKLEEILGSPSALRRLMIKEIEADAKTFADPRRTLIQAEKKAV-L 533

Query: 530 EDCIVREDMVVTVSHLGYVKRVP-LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           E  +V E + V VS  G+V+     +  RA    G   +    +  D + D F   T  +
Sbjct: 534 EVKVVDEPVTVVVSQKGWVRAQKGWASERAAN--GVLPAEYSFKAGDALYDTFECRTVDT 591

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           +L F S G VY   V  LP       G+ + ++L L  G ++                 +
Sbjct: 592 LLAFGSNGRVYSVAVALLPGARGD--GQPMTSLLELEAGTQLLYYFA------GPAPATL 643

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN---------DILLT 699
           + ++  G      + +     ++GK  +  ++ + +         +          +   
Sbjct: 644 LLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSPVAGGSGATPWPAATHVACA 703

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +  G+ + F IS ++  A     G+  I L   D++     
Sbjct: 704 SAGGRILTFEISQLKTMAT-GGRGLMLIDLEDKDRLAGACA 743


>gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505]
          Length = 764

 Score =  517 bits (1332), Expect = e-144,   Method: Composition-based stats.
 Identities = 244/821 (29%), Positives = 390/821 (47%), Gaps = 72/821 (8%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D    +GI   ++    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDT----DTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAA 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+ PN+DG+  EPVVL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV   C  ++D P  +L+ L+E++  PD+PT   +I  +  I
Sbjct: 176 ITGIAVGMATDIPPHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI +R V   E        IV+T +P+Q +   +LE+IA  +  K++  IA
Sbjct: 236 HKIYKTGRGSIKMRAVYTEEHGD-----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +     A+ ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR E V RR +Y L+K   R H+L GL  A  N+DEV+ IIR    P   +
Sbjct: 351 RCILSEWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             LM+R                            L++ Q  AILEL+L  L  L    IR
Sbjct: 408 PVLMER--------------------------FDLTDTQAEAILELKLRHLAKLEEFKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   IL S  R+  ++K+E+    +     RR+ ++E        ++D 
Sbjct: 442 GEQDELAKERDKLAQILGSERRMSTLLKKEIQEAAEMYGDDRRSPVIERSEAKALNEKDL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           I  E + V +S  G+         R  +       G+  R  D         ++   +F 
Sbjct: 502 IPSESVTVVLSDKGWA--------RVGKGHDLDVQGLNYRSGDGFRASARGKSNQPAVFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L  G        F     S +   ++ A+
Sbjct: 554 DSAGRAFATDAHSLPSA--RSQGEPMTGRFNLTPGA------NFEHVVMSEDEQVLLMAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + +     +LS         +  +  +  G+ + FP+
Sbjct: 606 DAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVASDYCMAISNEGRMLLFPL 665

Query: 711 SAIRVFAGRNSVGVRGI-----SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
             +   +     G + I      +   ++ + +  V+   +         K       L 
Sbjct: 666 RDLPKLS--KGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLHAGKRKLTLKPSDLE 723

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
               E              + E   +     ++ I  ++E+
Sbjct: 724 HYHGERGRRGNKLPRGLQRVDEAVVELTPQDDEPIEAINEE 764



 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 25/192 (13%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R   G    V+G++   GD   + A                   +    L S  ++    
Sbjct: 518 RVGKGHDLDVQGLNYRSGDGFRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPM 577

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G  +      +   EQ +L  S+ G+G  T   D    N++GK + +     
Sbjct: 578 TGRFNLTPG--ANFEHVVMSEDEQVLLMASDAGYGFITDFKDLVSKNKNGKALVSV---- 631

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
             + G L++   VND  +D  + +S++G ++  P+ ++   S+           K  +++
Sbjct: 632 -PKGGILLSPIRVNDVASDYCMAISNEGRMLLFPLRDLPKLSK----------GKGNKII 680

Query: 893 SV--ERIRESEI 902
           S+   +++  E 
Sbjct: 681 SIPGAKVQAREE 692


>gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58]
 gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
 gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385]
 gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76]
          Length = 767

 Score =  517 bits (1331), Expect = e-144,   Method: Composition-based stats.
 Identities = 230/736 (31%), Positives = 349/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +LS  +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSSGYGFITKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 696 --KGKGLQIIGLNAGE 709


>gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399]
 gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013]
          Length = 767

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 231/748 (30%), Positives = 354/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL+
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLA 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L  G+ +   A+    +
Sbjct: 696 --KGKGLQIIGLNAGESLTHTAVSSEPE 721


>gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
 gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217]
          Length = 770

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 229/737 (31%), Positives = 363/737 (49%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I         G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----NLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN+ E+V  CV ++D P  +L  L+EI+ GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDVPPHNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  +E+       I++T +P+Q     +LE+IA  +  K++  +A
Sbjct: 236 AKIYETGRGSIKARAVYTLEQGE-----IIITALPHQAGSGKILEQIANQMIAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T LQ  F VN+  L    +P+   L
Sbjct: 291 DLRDESDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ +R   V RR +Y L K   R H+L  L IA  N+DEV+ IIR+  +P++  
Sbjct: 351 KEMLSEWLVYRVGTVTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDPKS-- 408

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L++ Q  AIL+L+L  L  L    I 
Sbjct: 409 ---------------------------ELKARFNLTDKQAEAILDLKLRHLAKLEEFKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E   L  E  +   IL S  RL  ++K+EL++  +     RR+ IVE         ++ 
Sbjct: 442 AEQEELAAERDKLQLILGSERRLKTLVKKELIADGETYGDARRSPIVERSESKALTQQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      I  ++ + +F 
Sbjct: 502 TPTEAVTVVLSEKGWV--------RCAKGHDVDGQALSYKSGDSYLGSAIGKSNQAAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  +      LP    +++G+ +    ++  GE +  ++         ++   + A+
Sbjct: 554 DTSGRAFATDSHTLPSA--RSQGEPITTRFNMAPGESMQHVL------MGDDDQRYLMAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN--DILLTTKLGQCVRFPI 710
             G       SD    N++GK  + L    + L  +         IL  T  G+ + F +
Sbjct: 606 DAGYGFICSFSDMASRNKAGKALLTLPENAQSLMPKRIDSSQSPSILAITNEGRMLMFEL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 DALPQLS--KGKGNKII 680


>gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 769

 Score =  517 bits (1330), Expect = e-144,   Method: Composition-based stats.
 Identities = 236/784 (30%), Positives = 363/784 (46%), Gaps = 76/784 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 17  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 77  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 136

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 137 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 196

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 197 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 256

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------D 301
           +  + +++VTE+P   N A +L +I E    K       L                   D
Sbjct: 257 ARGQWRMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 316

Query: 302 ESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD     R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 317 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 376

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 377 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 430

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 431 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 467

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +               E +
Sbjct: 468 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTTADEPI 526

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 527 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 578

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G     G  + +++ L  G +     P           Y++  +  G   
Sbjct: 579 YTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAMLTGQPEQHYLLSGS-GGYGF 630

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M +DS + +L             +  I+L +   + + F I  
Sbjct: 631 IAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDCKIVLASSDHRLLAFSIGE 690

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           ++V       G++ +SL  G  +   A++  A+   +           + R+   D +  
Sbjct: 691 LKVMP--KGRGLQLMSLTDGASLEHTAVISSAEFTVETVGRRGAVHQERLRIRDIDGKRG 748

Query: 773 TSLK 776
              K
Sbjct: 749 KKGK 752


>gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
 gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996]
          Length = 769

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/804 (29%), Positives = 370/804 (46%), Gaps = 79/804 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++H+       E  +    +    + +YL YA++V+ GRA+P++ DG KPV RRILF M
Sbjct: 1   MSQHVSVPSPVGEDYLL---LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             MG+    K VK AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS 
Sbjct: 58  RDMGLAAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSR 117

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL   A  LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  
Sbjct: 118 DGDGAAAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGAS 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKN 239
           GIAVGMAT IP+HNL EV    +A++  P ++   LM+ I  PDF  G  I+     ++ 
Sbjct: 178 GIAVGMATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRR 237

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y TG+GS+ +R    IEK +  + +++VTE+P   N A +L +I E    K       L
Sbjct: 238 IYETGKGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQL 297

Query: 300 R------------------DESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
                              DESD     R+V E K      D  +N L   TSL+   S+
Sbjct: 298 NQDQLNTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSM 357

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           N+V +    +P +  L  IL+ ++ FR   V RR K+ LN+   R H+L G      ++D
Sbjct: 358 NLVMMGLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHID 417

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
           EV+++IR S +P+                                     L+E+Q   IL
Sbjct: 418 EVIKVIRESDDPKA-----------------------------DLMAAFGLTEIQAEDIL 448

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           E+RL +L  L    +  ELN L  E      +L   +    +I +E+ +   +    RRT
Sbjct: 449 EIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRT 508

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            +               E + + +S  G++        R++       S    ++ D + 
Sbjct: 509 LVE-EAGRAVLTQTTADEPITLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLK 559

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                 T   V+   SLG  Y      +P G     G  + +++ L  G +     P   
Sbjct: 560 QTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAM 612

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQ 692
                   Y++  +  G     KL D +   ++GK+ M +DS + +L             
Sbjct: 613 LTGQPEQHYLLSGS-GGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINP 671

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           +  I+L +   + + F I  ++V       G++ +SL +G  +  + +   A+   +   
Sbjct: 672 DCKIVLASSDHRLLAFSIGELKVMP--KGRGLQLMSLTEGASLEHVLVTTAAEFIVETVG 729

Query: 753 CYMKHMSAQRRLISGDTEEITSLK 776
                   + R+   + +     K
Sbjct: 730 KRGAAHQEKLRICDIEGKRGKKGK 753


>gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12]
 gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12]
          Length = 757

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/724 (32%), Positives = 375/724 (51%), Gaps = 63/724 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            G+  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K
Sbjct: 10  DGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSQSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG  GIAVGMAT++P
Sbjct: 129 EARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HN  E+V  CV ++DNP  DL+ LME + GPD+PT   +I  R  I   YATG+GSI  
Sbjct: 189 PHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYATGKGSIKA 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YR 309
           R V  IE        IV+T +P+Q +   +LE+IA  ++ K++  + DLRDESD +   R
Sbjct: 249 RAVYAIENGE-----IVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVR 303

Query: 310 VVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREE 367
           +V+  +      D ++  L+  T LQ  F VN+  L    +P+   L  IL  ++ FR  
Sbjct: 304 IVVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNGRPQVKGLKQILTEWLEFRLT 363

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            V RR  + L+K   R H+L  L +A  N+DEV+ IIR+  NP   + ELM R       
Sbjct: 364 TVTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENP---KAELMSR------- 413

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                +S++Q  AIL+L+L  L  L    I +E   L  E  + 
Sbjct: 414 -------------------FKVSDIQADAILDLKLRHLAKLEEMKITSEQGELATERDKL 454

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHL 545
             +LSS  RL  +IK+EL+   +     RR+ +VE        + +    E + V +S  
Sbjct: 455 QLLLSSDRRLKTLIKKELIQDGETYGDDRRSPLVERSESKALTEHELSPVEAVTVVLSEK 514

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G+V        R  +      +G+  +  D         ++   +F  S G  +  +   
Sbjct: 515 GWV--------RCAKGHDIDGNGLSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHT 566

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           LP    +++G+ +    +L+ GE +  ++          + + + A+  G        D 
Sbjct: 567 LPSA--RSQGEPITTRFNLSPGEVMEHVLL------GDEDKFYLLASDAGYGFVGSYKDM 618

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
           +  N++GK  + L +  +++  +   +     IL  T  G+ + F + A+   +     G
Sbjct: 619 VSRNKAGKALLSLPANAKVIKPKLVDKSKVESILAITNEGRMLLFSMEALPQLS--KGKG 676

Query: 724 VRGI 727
            + I
Sbjct: 677 NKII 680


>gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 745

 Score =  516 bits (1329), Expect = e-144,   Method: Composition-based stats.
 Identities = 237/732 (32%), Positives = 367/732 (50%), Gaps = 62/732 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+
Sbjct: 14  LHTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAKFKKSARAVGD 73

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K 
Sbjct: 74  VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 132

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL +LG+ TVD++ N+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+
Sbjct: 133 AEVLLRELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNIKEI 192

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
               + +ID P I L  LM  ++GPDFPT   +I  R  I+  Y TGRGSI +R V   E
Sbjct: 193 AYALIQLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIEQIYRTGRGSIRMRAVWKKE 252

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVIEL-K 315
           + +      V+T +P+QV+ A +LE+IA+ +R K++  + DLRDESD     R++I    
Sbjct: 253 EGNA-----VITALPHQVSGAKILEQIAQQMRAKKLPMLEDLRDESDHEHPTRLIIMPRH 307

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
            G   + ++N L+  T L+    +NM  +    +P    L+ IL  ++ FR   + RR  
Sbjct: 308 HGVHLEAVMNHLFATTDLEKSVRINMNMIGLDQRPLVKGLVSILTEWLTFRRATLRRRLL 367

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L+K   R HVL GL +A  N+DEV+ IIR                             
Sbjct: 368 FNLDKILKRLHVLKGLLVAFLNIDEVIHIIRT---------------------------- 399

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +            LS +Q  AILEL+L  L  L   +IR E ++L  E      +L+S 
Sbjct: 400 -EDEQKSFLISRFGLSLIQADAILELKLRHLAKLEEINIRAEQDALEKESGTLQSLLASE 458

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVP 552
            +L  +IK+++          RR+ +V+        + + +  E + V +S +G+     
Sbjct: 459 KKLNNLIKKDIQDDACLYGQNRRSPLVQRTASKESNENEVLPSEPVTVILSKMGWA---- 514

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               R  +       G+  +  D    +    +H S +   S G  Y     +LP    +
Sbjct: 515 ----RCAKGHEIDPVGLNYKKSDAFYAMARGKSHQSFVLLDSTGRTYALDPMKLPHA--R 568

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
            +G+ ++  L+  QG              +      + A+  G       +D +  NR G
Sbjct: 569 HQGEPVMGKLTPPQGA------VVKALMMAEPEQSYLMASDAGYGFICTFADMVAKNRGG 622

Query: 673 KIAMKLDSRDEILSVETCTQ-ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           KI M L    +IL     T   + +L  T LG+ + F ++ +   +     G + IS+  
Sbjct: 623 KILMTLPEGAQILPPLLITHANHYLLSITALGRMLIFSMADLPTLS--KGKGNKIISILS 680

Query: 732 GDQVISMAIVLH 743
            D    +  V+H
Sbjct: 681 ADWQAGLDRVIH 692


>gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1]
          Length = 747

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 239/739 (32%), Positives = 360/739 (48%), Gaps = 67/739 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE I  +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTETIRPA----FHGFEQIPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +LG+ TVD+ PN+DG+ +EP  + AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL E+V  CV ++D+PD  +  L E +RGPD+PT   +I   + +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  G GS+  R     E  +      VVT +PYQV+ + ++E+IA  +R K++  + 
Sbjct: 236 RAMYENGTGSVRARATWQKENGN-----FVVTALPYQVSPSKVIEQIAAQMRTKKLPWLE 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    KP    L
Sbjct: 291 DIRDESDHANPVRVVLVPRSNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDGKPAVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + VVRR K+   K   R H+L GL +A  NLDEV+RIIR    P  A 
Sbjct: 351 RTLLDEWLTFRTDTVVRRLKHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPA- 409

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             L+  Q   ILE RL +L  L    IR
Sbjct: 410 ----------------------------LIARFGLTGEQADYILETRLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E++  +  L S++RL  ++K ELL+   +    RR+ +V        ++ + 
Sbjct: 442 GEQDELARELERIVATLDSKARLKKLVKDELLADAKKFGDARRSPLVLREAAHAIDETEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        RA +      +G+  R+ D +       +   V F 
Sbjct: 502 VPSEPVTVVLSQKGWV--------RAAKGHDVDAAGLSYREGDALLGAVRARSTWQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y      LP            N   L       +   F    S  N+   V A+
Sbjct: 554 DSHGRSYSTPAHSLPSARG--------NGEPLTGRFSPASGASFLALASGENDTRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L        + + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKALINLATGANVLQPAVVGNPETDRIVAVTSAGHLLAIPA 665

Query: 711 SAIRVFAGRNSVGVRGISL 729
           + +         G + I +
Sbjct: 666 AELPELD--KGKGNKLIDI 682



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S  +GD ++  A+   +         + +  S     +         
Sbjct: 518 RAAKGHDVDAAGLSYREGDALLG-AVRARSTWQVAFLDSHGRSYSTPAHSLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S       +   +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGASFLALASGENDTRFVL-ASSHGYGFVTRFENLTGRNKAGKALINLATGA 635

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
                A+V      + D+I+ V+  G L+ +P  E+    +  KG  +  
Sbjct: 636 NVLQPAVVG---NPETDRIVAVTSAGHLLAIPAAELPELDK-GKGNKLID 681


>gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1]
          Length = 740

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/720 (32%), Positives = 370/720 (51%), Gaps = 62/720 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  
Sbjct: 1   MPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL 
Sbjct: 61  GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 119

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K +  LL +LG+ TVDF+PN+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP HN+ 
Sbjct: 120 KISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNIN 179

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSH 255
           EV D  V ++DNP   LD ++ II+GPDFPT   +I  +  I+  Y TGRGSI +R   H
Sbjct: 180 EVADAAVMLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWH 239

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIEL 314
            E        I+++ +P+Q + + ++ +IAE +  K++  + D+RDE+D +   R+V+  
Sbjct: 240 KEDGE-----IIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVP 294

Query: 315 KRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
           +      D ++  L+  T L+  + VNM  +   +KP    L+ +L  ++ FR   V RR
Sbjct: 295 RSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRR 354

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            ++ L+K   R H+L GL IA  N+DEV+ IIR    P+                     
Sbjct: 355 LQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQ-------------------- 394

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LS+ Q  AIL LRL  L  L    ++ E + L  E      IL 
Sbjct: 395 ---------VLMARFNLSDEQAEAILNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILG 445

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKR 550
           S  RL  +IK+E+     +  +PR +++VE      + + +    E + V +S +G+V  
Sbjct: 446 SERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKAISESEMTPAEPVTVILSEMGWV-- 503

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  +       G+  +  D         ++  V+F  S G  Y      LP   
Sbjct: 504 ------RCAKGHDIDPEGLSYKAGDKYLAHACGKSNQPVIFIDSTGRSYALDPLSLPSA- 556

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +++G+ L   L+L  G  I  ++             ++ A+  G     K  D I  N+
Sbjct: 557 -RSQGEPLTGKLTLPAGATIEQVI------MEPEKQELLMASDAGYGFICKFEDLIARNK 609

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILL-TTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +GK  + L    ++L  ET ++   +L+  T  G+ + FP+  +   +     G + IS+
Sbjct: 610 AGKALISLPENAKVLKPETLSESTSLLVSLTSAGRMLIFPVRDLPALS--KGKGNKIISI 667


>gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031]
 gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031]
          Length = 744

 Score =  516 bits (1328), Expect = e-144,   Method: Composition-based stats.
 Identities = 232/727 (31%), Positives = 374/727 (51%), Gaps = 61/727 (8%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
               +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3   NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 63  KYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMA
Sbjct: 122 MRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 182 TDIPPHNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 241

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R     E        I+++ +P+Q + + ++ +IA+ +  K++  + D+RDE+D +
Sbjct: 242 SIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHE 296

Query: 307 G-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V+  +      D ++  L+  T L+  + VNM  +   +KP    L+ IL  ++ 
Sbjct: 297 NPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLT 356

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR +Y L+K   R H+L GL IA  N+DEV+ IIR   +P   + ELM R   
Sbjct: 357 FRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDP---KAELMVR--- 410

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    LS+ Q  AIL LRL  L  L  + ++ E + L  E
Sbjct: 411 -----------------------FNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKE 447

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 IL S  RL  +IK+E+     +  +PR +++VE        +  +   + V +S
Sbjct: 448 RLNLEAILGSERRLNTLIKKEIQEDAKKYASPRMSQLVEREEAKMISESDMT-PVTVILS 506

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
            +G+V        R  +        +  +  D         ++ +V+F  S G  Y    
Sbjct: 507 EMGWV--------RCAKGHDIDPKSLSYKAGDNYLAHACGKSNQAVVFIDSTGRSYALDP 558

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP    +++G+ L   L+L  G  I  ++       +     ++ A+  G     K  
Sbjct: 559 LSLPSA--RSQGEPLTGKLNLPTGATIEYVV------MASEQQELLMASDAGYGFICKFE 610

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           D I  N++GK  + L    ++L  +        ++  T  G+ + FP   + V +     
Sbjct: 611 DLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLS--KGK 668

Query: 723 GVRGISL 729
           G + I++
Sbjct: 669 GNKMITI 675


>gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda]
          Length = 701

 Score =  515 bits (1327), Expect = e-144,   Method: Composition-based stats.
 Identities = 233/705 (33%), Positives = 353/705 (50%), Gaps = 62/705 (8%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG +A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTV 151
           Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL + A  LL +LG+ TV
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSRYAEILLSELGQGTV 119

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+  N+DG+ QEP  L AR PN+L+NG  GIAVGMAT+IP HN  EV    VA++DNP  
Sbjct: 120 DYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQS 179

Query: 212 DLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            LD L+  I+GPDFPT   +I  R  I+  Y TGRGS+ +R V   E++      IV++ 
Sbjct: 180 SLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEESE-----IVISA 234

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLY 328
           +P+Q + A +LE+IA  +R +    + DLRDESD +   R+VI  +      D ++N L+
Sbjct: 235 LPHQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLF 294

Query: 329 RYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             T L+  + +NM  +    +P    L  IL  ++++R E V RR  Y L K   R H+L
Sbjct: 295 ATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHIL 354

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL  A  N+DEV+ IIR    P+                                    
Sbjct: 355 EGLLCAFLNIDEVIHIIRSEDEPK-----------------------------PVLVARF 385

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            LS+ Q  AILEL+L  L  L    IR E ++L  E      +L+S  +L  +IK+E+++
Sbjct: 386 GLSDTQAEAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKEEIMA 445

Query: 508 VKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
             +     RR+ + E      M + D +  E + + +S  G+V        R+ +     
Sbjct: 446 DAETYGDARRSPLQERSEARAMSEHDFVPSEPVTIVLSEGGWV--------RSAKGHDID 497

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
            SG+  +  D         ++  V+F  S G  Y      LP    Q           L 
Sbjct: 498 PSGLNYKAGDAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGE--------PLT 549

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
                           + +N  ++ A+  G       SD +  NR+GK  + L    ++L
Sbjct: 550 GKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDLVACNRAGKAMLTLPENAKVL 609

Query: 686 SVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
           +      ++D +L  T+ G+ + FP+  +   +     G + +S+
Sbjct: 610 TPLEINGDDDMLLAITEAGRMLMFPVHDLPQLS--KGKGNKIVSI 652



 Score = 52.1 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   + A            I       A   L          
Sbjct: 489 RSAKGHDIDPSGLNYKAGDAFRAAA--RGKSNQPVVFIDSSGRSYALDPLTLPSARGQGE 546

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +    Q +L  S+ G+G   +  D    NR+GK   A     
Sbjct: 547 PLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDLVACNRAGK---AMLTLP 603

Query: 835 INEIGALVAVFPVNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
            N    ++    +N +D ++L +++ G ++  PV+++   S+           K  ++VS
Sbjct: 604 ENA--KVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSK----------GKGNKIVS 651

Query: 894 V 894
           +
Sbjct: 652 I 652


>gi|295111080|emb|CBL27830.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Synergistetes bacterium SGP1]
          Length = 536

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 193/384 (50%), Positives = 267/384 (69%), Gaps = 5/384 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E  I   +   + I S+ +  E+++SYL YA++VI+GRA+PD+RDGLKPV RR+L+ M
Sbjct: 24  MSEEKI-EGQRAGERILSLPLVGEIKDSYLNYAMSVIVGRALPDVRDGLKPVQRRVLYAM 82

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  N  Y K ARI GE MGKYHPHG+++IYD + R+AQDWSLR  L++GQGNFGSV
Sbjct: 83  SELGLRHNSAYKKSARIVGETMGKYHPHGDSSIYDTMVRLAQDWSLRYCLVDGQGNFGSV 142

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE RL +    +L D+ +DTV++ PN+D S +EP+ L +  PN+LVNG  
Sbjct: 143 DGDRAAAMRYTEARLHELGELMLADIDEDTVEWGPNFDESLKEPLSLPSVLPNLLVNGST 202

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVID---NP-DIDLDALMEIIRGPDFPTGAVILGRTG 236
           GIAVGMATNIP HNL EV D    +++   NP +  L  LME + GPDFPTG  ILGR G
Sbjct: 203 GIAVGMATNIPPHNLREVTDVLCWLLEEGINPAEASLADLMERLPGPDFPTGGQILGRQG 262

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I +AY TGRG +++RG  H+E     +  ++VTEIPY VNK  ++E + +  ++K I  I
Sbjct: 263 IYDAYRTGRGKVIVRGRMHVEDGRRGKVNVIVTEIPYAVNKTTLIETMVKAAQDKVIDGI 322

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D+RDES+R+G R+V+EL R A+ D+++ QLY+ T LQ+ F V  +AL+   P    L  
Sbjct: 323 QDIRDESNREGMRIVLELSRDANPDLVMRQLYKRTQLQATFGVINLALDRQTPRLLPLAS 382

Query: 357 ILKAFVAFREEVVVRRTKYLLNKA 380
           IL  F+++R +VV RRT++ LNKA
Sbjct: 383 ILGLFLSYRRDVVRRRTQFRLNKA 406


>gi|27262294|gb|AAN87428.1| DNA gyrase subunit A [Heliobacillus mobilis]
          Length = 639

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 265/722 (36%), Positives = 402/722 (55%), Gaps = 85/722 (11%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           M  NIP HNL EVVD    +IDNP++  + LM+ I+GPDFPTG +I+GR GI+ AY TGR
Sbjct: 1   MGXNIPPHNLSEVVDAVFMMIDNPNVTTEDLMKSIKGPDFPTGGLIMGREGIRQAYLTGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+++R  + IEK +G + +I+V EIPYQVNKA +LE+IAELVR+KR+  I DLRDESDR
Sbjct: 61  GSVIMRAKARIEKMNGGKMRILVHEIPYQVNKAKLLERIAELVRDKRVDGITDLRDESDR 120

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
           +G ++VIEL+R  +  V+LNQLY++T +Q  F VNM+AL    P+   L  I+  ++  +
Sbjct: 121 KGMQIVIELRRDVNPQVVLNQLYKHTQMQDTFGVNMLALVDNVPKVLNLRDIIYYYLEHQ 180

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++V+VRRT+Y L KA  RAH+L GL IA+ N+D ++ IIR S   + AR ++M       
Sbjct: 181 KDVIVRRTRYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSETEDVARSQMM------- 233

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL--GIE 483
                              G    SE Q +AIL++RL RL          +         
Sbjct: 234 -------------------GEFGFSEKQAQAILDMRLKRLVRNWTGKRLKKSIQSLLNSF 274

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                   +S   +L IIK+E+  +K +    RRT I  G  D + ED I  ED VVT++
Sbjct: 275 AYFRARNWNSEKLVLDIIKKEIGEIKAKFADARRTEITAGAGDFDIEDLIAEEDAVVTIT 334

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GY+KR+ ++ Y+AQRRGGKG + +  +++DFV  LFI +TH  +LFF+  G VY+ K 
Sbjct: 335 HNGYIKRLHVNTYKAQRRGGKGVTAMGTKEDDFVELLFITTTHHYLLFFTDKGKVYRLKT 394

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P  S  A+G A++N+L++   +++  ++P  E      + Y++ AT++G V++  L 
Sbjct: 395 HEIPEASRTAKGTAIVNLLNITGDDKVNAVIPVKEFS---KDQYLLTATRNGIVKKTVLQ 451

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +    + G IA+ LD  DE++ V+    E+DILL T+ G  VRFP   +R   GR + G
Sbjct: 452 QYDSSRKEGLIALTLDDGDELIGVKLTDGESDILLATRNGMAVRFPEGDVREM-GRTTRG 510

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           V+GI L+K D V++M      D                                      
Sbjct: 511 VKGIELSKDDFVVAMETFKDDDKID----------------------------------- 535

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                           +L ++E G GKRT+  ++R  +R GKGI +  +++  + G +  
Sbjct: 536 ----------------LLMITESGMGKRTAVEEYRSQHRGGKGIISMRLTQ--KTGLMAG 577

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +  V   D+++++S +G +IR+ V+EI   SR T+GV I     +++VV+V R+   E  
Sbjct: 578 IKVVRPGDELMVISAEGVIIRLNVDEISRFSRVTQGVSIMKINPNDKVVAVARVAMREED 637

Query: 904 DE 905
           DE
Sbjct: 638 DE 639


>gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
 gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685]
          Length = 752

 Score =  515 bits (1327), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/741 (31%), Positives = 351/741 (47%), Gaps = 76/741 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 2   LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGE 61

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 62  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 121

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 122 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 181

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 182 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 241

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------D 301
           +  + +++VTE+P   N A +L +I E    K       L                   D
Sbjct: 242 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 301

Query: 302 ESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD     R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 302 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 361

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 362 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 415

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 416 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 452

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +               E +
Sbjct: 453 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTTADEPI 511

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 512 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 563

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G     G  + +++ L  G +     P           Y++  +  G   
Sbjct: 564 YTLDAAEIPGGRGD--GVPVSSLIELQNGAK-----PVAMLTGQPEQHYLLSGS-GGYGF 615

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M +DS + +L             +  I+  T   + + FPI  
Sbjct: 616 ITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDCKIIAATNQNRAISFPIGE 675

Query: 713 IRVFAGRNSVGVRGISLAKGD 733
           +++       G++ I L  G+
Sbjct: 676 LKIMP--KGKGLQIIGLNAGE 694


>gi|227873175|ref|ZP_03991466.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841006|gb|EEJ51345.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 459

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 206/461 (44%), Positives = 296/461 (64%), Gaps = 31/461 (6%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           +      +  V +   M+N+Y+ YA++VI+ RAIPD+RDGLKPV RR+L+ +  +GV  +
Sbjct: 2   EPNIFDKVQDVDLKKTMENAYIDYAMSVIVSRAIPDVRDGLKPVQRRVLYALQSLGVTPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KK  KCA I GE MGKYHPHG+++IY +L  M Q WS+R +LI+ QGNFGS DGD PAA 
Sbjct: 62  KKTKKCATIVGETMGKYHPHGDSSIYGSLVYMGQPWSMRHVLIDKQGNFGSEDGDSPAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ + A  +L  + K+TVDF PN+   ++EPVVL +R+PN+LVNG  GIAVGM+T
Sbjct: 122 RYTEAKMSRLAGEMLAGINKNTVDFMPNFSNEYEEPVVLPSRFPNLLVNGATGIAVGMST 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           NIP HNL EV+ G   +IDN       +++ L+ II+GPDFPTGA ILG+ GI+ AY TG
Sbjct: 182 NIPPHNLREVIKGVDCIIDNKIAGRKTEIEELLPIIQGPDFPTGATILGKRGIEEAYRTG 241

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG I +R +  IE     + +I+V E+PY V ++ ++EKIAELV++KRI  I  + D + 
Sbjct: 242 RGKIKMRAICEIEPMHNGKNRILVKELPYLVYRSRVIEKIAELVKDKRIDGITYIHDAAG 301

Query: 305 RQG-YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           +    ++ IE ++  +  VILNQLY++T LQ  F V M+ +   +P+   L+ IL+ F+A
Sbjct: 302 KNSKAKIAIECRKDVNPHVILNQLYKHTQLQETFGVIMLCIVRGEPKILNLLEILEEFLA 361

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + +VV RRT+Y L K  DRAH+L GL  A+ ++DE+V IIR + N E A++ L+ R   
Sbjct: 362 HQIQVVTRRTQYDLQKCEDRAHILEGLLKALDHIDEIVAIIRAAKNVEEAKQNLITR--- 418

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
                                     +EVQ +AI+++RL  
Sbjct: 419 -----------------------FAFTEVQAQAIVDMRLRA 436


>gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 747

 Score =  515 bits (1326), Expect = e-143,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 360/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL ++ + T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  +  N+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 RQLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL++   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIMAILESKTKLKKLIKDELIADAKKFGDARRSPLVQRDAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSEGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           S +         G + I + K
Sbjct: 666 SDVPELD--KGKGNKIIEIPK 684



 Score = 42.9 bits (99), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 62/171 (36%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T      ++ R+  G    +++ 
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFE--NLTGRNKAGKAMLNLTA 633

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +    ++    V++   D+I+ V+  G L+ VP +++    +  KG  I 
Sbjct: 634 GS---HVLTPAQVSNPQTDRIVAVTSAGNLLAVPASDVPELDK-GKGNKII 680


>gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
 gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS]
          Length = 797

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 244/783 (31%), Positives = 367/783 (46%), Gaps = 82/783 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M             G T++++ D  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ M
Sbjct: 1   MDSQPPLDLGGPTDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSM 60

Query: 61  MQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
            +MG+ +         K VK AR+ G+V+G++HPH + A YDAL RMAQD+S R  L++G
Sbjct: 61  SRMGLGFGGTNGTVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLVDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS DGD  AA RYTE RL +    LLD++ + TVDF PNYDGS +EP +L AR P 
Sbjct: 121 QGNFGSRDGDGAAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPF 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVIL 232
            L+NG  GIAVG+AT IP+HNL E+ D CVA+I  N  +  + L  I+ GPD+P GA I+
Sbjct: 181 TLLNGASGIAVGLATEIPSHNLREIADACVALIKSNGKLSEEELFAIVPGPDYPGGAQII 240

Query: 233 -GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            G + I +AY TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   K
Sbjct: 241 SGASDIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPK 300

Query: 292 RIVDIADLRDE-------------------SDRQGYRVVIELKRGASA-DVILNQLYRYT 331
                  L  E                   S     R+V E K    + +  +  L   T
Sbjct: 301 VKAGKKALSAEQTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQEEFITTLLAQT 360

Query: 332 SLQSLFSVN-MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           SL++   +N  +     KP + +L  +L  ++AFRE  V +R+++ LNK  +R H+L G 
Sbjct: 361 SLETSSPINLTMVGIDGKPTQKSLRQMLNEWIAFREITVEKRSRHRLNKVLERIHILEGR 420

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            + + N+DEV+ IIR + +P+ A                                   LS
Sbjct: 421 QLVLLNIDEVIAIIRAAEDPKAA-----------------------------LIARFNLS 451

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q   ILE+RL +L  L    I  EL  L  E K+  DIL S + L  ++ +E+ +   
Sbjct: 452 ERQAEDILEIRLRQLARLEAIKIEQELKGLREEQKKLEDILGSPATLRRLLIKEIEADAK 511

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
             + PRRT I      +  E  +V E + V VS  G+V+             G       
Sbjct: 512 TFEDPRRTLIQAEKRAV-AEVKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGAAPEYS 570

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLG----FVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            +  D +   F   +  ++L F S       VY   V  LP       G+ +  ++ L+ 
Sbjct: 571 FKSGDTLYGAFECRSVDTLLVFGSSKDKSVRVYTVPVASLPGARGD--GQPVTTLIELDA 628

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILS 686
           G             +      V+ A   G      + + +   R GK  + +   +++  
Sbjct: 629 GTH------VTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLCR 682

Query: 687 VETCTQEN---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
                  +          +   +  G+ + F I+ ++    +   G+  I L   D +  
Sbjct: 683 PSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLP-KGGRGLTLIDLEPKDTLAG 741

Query: 738 MAI 740
            A 
Sbjct: 742 AAA 744


>gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
 gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970]
          Length = 767

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/748 (31%), Positives = 353/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +LS  +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +     P           Y++  +  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAK-----PVAMLTGLPEQHYLLSGS-GGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L  G+ +   A+    +
Sbjct: 696 --KGKGLQIIGLNAGESLTHTAVSSEPE 721


>gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
 gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453]
          Length = 759

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/752 (30%), Positives = 365/752 (48%), Gaps = 76/752 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P ++DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 13  ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSARVVGEILGKY 72

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE  L   A  LL +
Sbjct: 73  HPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLTPLAELLLSE 132

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EPV L AR P VL+NG  GIAVGMAT IP+HNL EV    VA+
Sbjct: 133 INQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAVAL 192

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P + L  LM+ I  PDF  G   I     +++ Y TG+GS+ +R    I+K +  + 
Sbjct: 193 LKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQIDKMARGQW 252

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++V+E+P   + A +L +I E    K       L                   DESD  
Sbjct: 253 RVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKVRDESDSE 312

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVA 363
              R+V E K      +  +N L   TSL+   SVN+V +    +P +  L  IL+ ++ 
Sbjct: 313 HPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNLKTILQEWLD 372

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           +R   V RR ++ L+    R H+L G  IA  ++DE++R+IR S  P+            
Sbjct: 373 YRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPKQ----------- 421

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +++ELN L  E
Sbjct: 422 ------------------DLIRQFGLTEIQADDILEIRLRQLARLEGVKLKSELNELREE 463

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                ++LS       +I +E+ +   +    RRT +               E + + +S
Sbjct: 464 QGSLKNLLSDEDAKKKLIIKEMKADAKQFGDARRTLVE-AAERATLTQTTADEPITLILS 522

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA+       S +  ++ D +  +    T  SV+    LG  Y    
Sbjct: 523 QKGWI--------RARAGHDVDLSQIAFKEGDDLQQVLQTRTVQSVVVLDDLGRSYTINP 574

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  L +++ +  G +   ++         ++ Y++  +  G     KL 
Sbjct: 575 ADVPKGRGD--GVPLGSLIEIQAGAKALAMLSGSN-----DDHYLLAHS-GGYGFICKLE 626

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D    +++GK  M L++ + +L             +  ++L T+  + + FPI  +++ A
Sbjct: 627 DLHSRSKTGKTVMMLEAGETVLPPVPVYLSALINPDCKVVLATEQKRLLAFPIGEMKIMA 686

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                G++ I L   D++I + ++   +   D
Sbjct: 687 --KGRGLQLIRLQGNDKLILINVLKTENCTLD 716


>gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568]
 gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196]
          Length = 765

 Score =  515 bits (1325), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/753 (30%), Positives = 356/753 (47%), Gaps = 76/753 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 135 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------D 301
           +  + +++VTE+P   N A +L +I E    K       L                   D
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD     R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +               E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G     G  + +++ L  G +   ++            + + ++  G   
Sbjct: 577 YTLDAAEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +++ A     G++ I L  G+ +   A+    +
Sbjct: 689 LKIMA--KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma
           proteobacterium EBAC31A08]
          Length = 749

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/726 (32%), Positives = 390/726 (53%), Gaps = 62/726 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ ITS+S+    + SYL YA+ VIL RA+P++ DGLKPV RRIL+ M ++G++   KY 
Sbjct: 2   KEQITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG+ A Y+A+  MAQ++S +   ++GQGN+GS D DP   AA RY
Sbjct: 62  KSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQD-DPKSFAAMRY 120

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L K A+ L+ +L   TVD++PN+DGS  EPV+  A+ P++L+NG  GIAVGMAT+I
Sbjct: 121 TESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDI 180

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIV 249
           P+HN+ E++D  V +IDNP   L  L++II GPDF     +I  +  +   Y+TG+G   
Sbjct: 181 PSHNINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKGGFK 240

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGY 308
            +          D+ QI++  +PYQ + + +LE+IA+ + +K+I  + DL DE D  +  
Sbjct: 241 AQAQWAQ-----DKNQIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPV 295

Query: 309 RVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFRE 366
           R+VI LK    +A+ ++N L+  T LQ  + VNM  ++    P+ F+L+ +LK ++ FR+
Sbjct: 296 RLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWLVFRK 355

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+               
Sbjct: 356 ETVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK-------------- 401

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LS++Q  AILE+RL +L  L +  +  E ++L  E  +
Sbjct: 402 ---------------DIITAFKLSDIQANAILEIRLRQLAKLEQIKLEQERDTLVAEQTD 446

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSH 544
              ILSS++RL  +IK EL+ +KDE    R + I E        +E+ +V E + V +S 
Sbjct: 447 IEKILSSKTRLKTLIKNELIEIKDEFGEVRXSPIREATEAKVFSEEETLVTEPITVVLSA 506

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R+ +      S +  R ED + D     ++   +F  S G  Y     
Sbjct: 507 AGWI--------RSAKGHEIDPSSLSYRGEDVLQDYGRGKSNQVSVFLDSNGKAYSLASH 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            LP    +  G  +   +S + G +  + +   +      + +++  T  G    ++  +
Sbjct: 559 SLPSA--RGMGDPITGRVSADSGVKFISSLIGND-----EDKFMIMNTA-GYGYISEFKN 610

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +   +SGK  MK+    ++L       ++  I   + +G+ + F I  +         G
Sbjct: 611 MVSNKKSGKAFMKIPHEADLLKAIKVRDDHLYIAAVSNIGRLLIFKIDELPTLG--KGKG 668

Query: 724 VRGISL 729
            + I++
Sbjct: 669 NKIINI 674


>gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149]
 gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33]
          Length = 765

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/748 (30%), Positives = 354/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L    +   ++            + + ++  G     KL+
Sbjct: 582 AEIPGGRGD--GVPVSSLIELQNSAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLA 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L  G+ +   A+    +
Sbjct: 694 --KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153]
          Length = 777

 Score =  514 bits (1324), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/736 (31%), Positives = 350/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 32  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 91

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 92  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 151

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 152 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 211

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 212 LKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 271

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 272 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 331

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 332 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 391

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 392 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 440

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 441 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 482

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +LS  +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 483 QGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 541

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 542 EKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDA 593

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 594 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSSGYGFITKLG 645

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 646 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 705

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 706 --KGKGLQIIGLNAGE 719


>gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710]
 gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304]
 gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579]
          Length = 765

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/748 (30%), Positives = 355/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL+
Sbjct: 582 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLA 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L  G+ +   A+    +
Sbjct: 694 --KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 767

 Score =  514 bits (1323), Expect = e-143,   Method: Composition-based stats.
 Identities = 231/748 (30%), Positives = 354/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +LS  +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLSDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTTADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTTDSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L  G+ +   A+    +
Sbjct: 696 --KGKGLQIIGLNAGESLTHTAVSSEPE 721


>gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
 gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442]
          Length = 765

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/741 (31%), Positives = 351/741 (47%), Gaps = 76/741 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 15  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 75  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 134

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV  
Sbjct: 135 LLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQ 194

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK 
Sbjct: 195 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKL 254

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------D 301
           +  + +++VTE+P   N A +L +I E    K       L                   D
Sbjct: 255 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 314

Query: 302 ESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD     R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 315 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 374

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+       
Sbjct: 375 QEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA------ 428

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 429 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 465

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +L   +    +I +E+ +   +    RRT +               E +
Sbjct: 466 ELREEQGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPI 524

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   SLG  
Sbjct: 525 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRT 576

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G     G  + +++ L  G +   ++            + + ++  G   
Sbjct: 577 YTLDAAEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGF 628

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISA 712
             KL+D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 629 IAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGE 688

Query: 713 IRVFAGRNSVGVRGISLAKGD 733
           +++ A     G++ I L  G+
Sbjct: 689 LKIMA--KGKGLQIIGLNAGE 707


>gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 812

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 253/806 (31%), Positives = 372/806 (46%), Gaps = 113/806 (14%)

Query: 1   MTEHI----ISSDEEEEKGITS-----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           MT+      I    E    +       +++    Q +YL YA++V+ GRA+PD+ DGLKP
Sbjct: 1   MTDQTTLDLIPDPAEPTGPVPPGDDGELNLATYAQRAYLEYALSVVKGRALPDVCDGLKP 60

Query: 52  VHRRILFGMMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           V RRIL+ M +MG+ +         K VK AR+ G+V+G++HPHG+ + YDAL RMAQD+
Sbjct: 61  VQRRILYSMGRMGLGFGGANGNAGAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDF 120

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R  L++GQGNFGS DGD  AA RYTE RL K    LLD++ + TVDF+PNYDGS +EP
Sbjct: 121 SQRYPLVDGQGNFGSRDGDGAAAMRYTEARLAKITTLLLDEIDQGTVDFQPNYDGSTEEP 180

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
             L AR P  L+NG  GIAVG+AT IP+HNL EV D CVA+I N  +  D L  +I GPD
Sbjct: 181 KQLPARLPFSLLNGASGIAVGLATEIPSHNLREVADACVALIKNDKLSDDELFTLIPGPD 240

Query: 225 FPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           FP G  I+   + I +AY +GRGS+ +R    IE  +  + Q+VVTE+P  V+   +LE+
Sbjct: 241 FPGGGQIISSASDIADAYRSGRGSLKVRARWKIEDLARGQWQLVVTELPPGVSSQRVLEE 300

Query: 284 IAELVREKRIVDIAD------------------LRDESDRQG-YRVVIELK-RGASADVI 323
           I EL   K                         +RDES++    R+V E K R      +
Sbjct: 301 IEELTNPKVKAGKKALSQEQTQLKASILSVLDVVRDESNKDALVRLVFEPKSRTVEQQEL 360

Query: 324 LNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +  L  +TSL++   +N+  +    KP + +L  +L  +VAFR   + RR+++ L K  D
Sbjct: 361 ITALLAHTSLETSSPINLTMVGLDGKPVQKSLRQMLVEWVAFRASTIERRSRHRLGKVLD 420

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H+L G    + N+DEV+ IIR S  P+ A                             
Sbjct: 421 RIHILEGRQTVLLNIDEVIAIIRNSDEPKAA----------------------------- 451

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 LS+ Q   ILE+RL +L  L    I  EL+ L  E  +  +IL S + L  ++ 
Sbjct: 452 LIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELSELRTEQGKLEEILGSPAALRRLMV 511

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +E+ +        RRT I      +  E  +V E + V VS  G+V        RA+   
Sbjct: 512 KEIEADAKVFADARRTLIQAEKKAV-AEVKVVDEPVTVVVSEKGWV--------RARTGH 562

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G   S    +  D +   F   T  ++L F S G +Y   V  LP G     G+ +  +L
Sbjct: 563 GHEASTFAFKAGDGLYGTFECRTVDTLLVFGSNGRIYTVPVSALPGGRGD--GQPVTTLL 620

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L  G +I      P       +         G      + +     ++GK  + +   +
Sbjct: 621 ELEGGTQILYYFAGPSSAQLLLSS------SGGYGFIASVENMTSRQKAGKAFVGVGEGE 674

Query: 683 EILSVETCTQEN----------------------------DILLTTKLGQCVRFPISAIR 714
              +    +                                +   +  G+ + F I+ ++
Sbjct: 675 TPCAPSVVSGAQGKVTFAGKEGSTAPGAAGAQATLLAPATHVACASTGGRILTFEITELK 734

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAI 740
             A     G+  I L   D +   A 
Sbjct: 735 TMAN-GGRGLMLIDLEAKDTLAGAAA 759


>gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355]
          Length = 765

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 230/748 (30%), Positives = 354/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIVKEMQADMKQFGDVRRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL+
Sbjct: 582 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLA 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L  G+ +   A+    +
Sbjct: 694 --KGKGLQIIGLNAGESLTHTAVSSEPE 719


>gi|258611537|ref|ZP_05711543.1| parC [Listeria monocytogenes FSL N3-165]
 gi|258601050|gb|EEW14375.1| parC [Listeria monocytogenes FSL N3-165]
          Length = 470

 Score =  513 bits (1322), Expect = e-143,   Method: Composition-based stats.
 Identities = 208/494 (42%), Positives = 313/494 (63%), Gaps = 26/494 (5%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLCTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+  L  +          
Sbjct: 363 KRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK---------- 412

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                              SE Q  AI+ L+L RLT     ++++E  SL  +I     I
Sbjct: 413 ----------------YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKI 456

Query: 491 LSSRSRLLGIIKQE 504
           L   + L+ ++K+ 
Sbjct: 457 LGDEAELIAVLKEN 470


>gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens]
          Length = 756

 Score =  513 bits (1321), Expect = e-143,   Method: Composition-based stats.
 Identities = 235/758 (31%), Positives = 372/758 (49%), Gaps = 76/758 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G+  + +    +N+YL Y++ VI+  A+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLTNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ EV    VA++D P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y +GRGS+ +R V   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQSGRGSVRMRAVGKKEDGSA-----VITALPHQVSGAKVLEQIASQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++N L+  T L+  + +NM  +     P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDNTPAVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++A+R + V RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+   
Sbjct: 348 VEILTEWLAYRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +S+ Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PVLMQRFGISDTQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP--RRTRIVEGLLDMEDEDC 532
            E + L  E  +   +L+S  +L  +IK+E+ +          RR         M + D 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKEIQADAQTYGDDRLRRLTERAEAKAMSEHDF 498

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + + +S +G+V        R+ +      +G+  +  D         ++  V+F 
Sbjct: 499 VPSEPVTIVLSEMGWV--------RSAKGHDIDPAGLSYKAGDSFA-AVRGKSNQVVVFI 549

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S          +LP    Q           L             +   + ++  ++ A+
Sbjct: 550 DSTERSTAVDPMKLPSARRQGE--------PLTGKLTPPPGATIEQVLMAADDQKLLMAS 601

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPIS 711
             G       +D +  NR+GK+ + L      L        +D +L  T  G+ + FP++
Sbjct: 602 DAGYGFVCTFNDLVARNRAGKVMITLPDNARALPPMEIHGADDMLLSITAAGRMLMFPVA 661

Query: 712 AIRVFAGRNSVGVRGISL------AKGDQVISMAIVLH 743
            +   +     G + +S+      A  D++  + ++  
Sbjct: 662 DLPQLS--KGKGNKIVSIPAAQAAAGEDKLAWLFVLPP 697



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 29/184 (15%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   S A V          I   +  +A   +          
Sbjct: 515 RSAKGHDIDPAGLSYKAGD---SFAAVRGKSNQVVVFIDSTERSTAVDPMKLPSARRQGE 571

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      +   +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 572 PLTGKLTPPPGATIEQVLMAADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNA 631

Query: 835 INEIGALVAVFP---VNDNDQIIL-VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
                      P   ++  D ++L ++  G ++  PV ++   S+           K  +
Sbjct: 632 R--------ALPPMEIHGADDMLLSITAAGRMLMFPVADLPQLSK----------GKGNK 673

Query: 891 VVSV 894
           +VS+
Sbjct: 674 IVSI 677


>gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 747

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 363/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RNIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 KHLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSQKGWV--------RAAKGHEVDPAGMSYRDGDGLLTAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSDGRAYSTAVHTLPSARG--------NGEPLTGRFSPASCAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TDVPELD--KGKGNKIIEIPK 684



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLT-AVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASCAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  ++    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDK-GKGNKII 680


>gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
 gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli]
          Length = 749

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 232/722 (32%), Positives = 369/722 (51%), Gaps = 63/722 (8%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL Y+++VIL RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+
Sbjct: 16  LRSFTEKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVGD 75

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GK+HPHG+ A Y+A+  MAQ +S R  LI+GQGN+GS D DP   AA RYTE RL + 
Sbjct: 76  VLGKFHPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQD-DPKSFAAMRYTESRLTRY 134

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH LL +L   TVD+ PN+D + +EP  L AR PN+L+NG  GIAVGMAT+IP+HNL EV
Sbjct: 135 AHALLTELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEV 194

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIE 257
           V+ C+ ++D P+  L  L  +I+GPDFP+ A  I  R+ +   Y  G G I  R +   E
Sbjct: 195 VNACIRLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIYREE 254

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ-GYRVVIELKR 316
           K      QI++T +PYQV+ A ++E+IAE +R+K++  I DLRDESD +   R+VI  + 
Sbjct: 255 K-----NQIIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRS 309

Query: 317 GA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTK 374
                D +++ L+  T L+  + +N+  +    +P+   L  IL+ ++ +R+  V +R +
Sbjct: 310 SRVDTDALMDHLFATTDLERSYRINLNMIGLDGRPQVKNLRAILQEWLEYRQTTVKKRLE 369

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + LNK   R H+L G  I   +LDEV+ +IR   +P+T                      
Sbjct: 370 FHLNKILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKT---------------------- 407

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LS++Q  AILE+RL +L  L    +R E  SL  E      ILSS+
Sbjct: 408 -------QLMRHYKLSDIQADAILEIRLRQLAKLEEIKLRAEQKSLIAERDNLQKILSSK 460

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVP 552
           ++L  +I+ EL          RR+  VE       +  + I  E M V +S  G++    
Sbjct: 461 TQLKRLIRSELQEDAKRYGDLRRSPFVERRAAQALQKTEIISSEPMTVILSTRGWI---- 516

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               RA +      SG+  +  D +    +  ++  ++   S G  Y   +  LP    +
Sbjct: 517 ----RAAKGHDFDVSGLSFKAGDALKSTVLGRSNQLLVLMDSTGRSYSTPLHSLPSA--R 570

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           + G+ L +  +   G +  +++          +  +V ++  G     +LS+    NR+G
Sbjct: 571 SSGEPLTSRFNPPPGVQFESMIS------GNPDQAIVVSSDAGYGFITQLSEMYSKNRNG 624

Query: 673 KIAMKLDSRDEILS--VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           K  +KL +   +L          + + L T  G  +      +   +     G + + ++
Sbjct: 625 KSLLKLSAHAHVLPLLALNAIDSSYVALATNTGYLLIISAYELPQLS--RGKGNKMMQIS 682

Query: 731 KG 732
             
Sbjct: 683 SK 684



 Score = 45.2 bits (105), Expect = 0.046,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 61/169 (36%), Gaps = 10/169 (5%)

Query: 719 RNSVG----VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G    V G+S   GD + S  +                + +    L S  +     
Sbjct: 517 RAAKGHDFDVSGLSFKAGDALKSTVLGRSNQLLVLMDSTGRSYSTPLHSLPSARSSGEPL 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E         +Q I+  S+ G+G  T   +    NR+GK      +S 
Sbjct: 577 TSRFNPPPGVQFESMIS--GNPDQAIVVSSDAGYGFITQLSEMYSKNRNGK--SLLKLSA 632

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              +  L+A+  + D+  + L ++ G L+ +   E+   SR  KG  + 
Sbjct: 633 HAHVLPLLALNAI-DSSYVALATNTGYLLIISAYELPQLSR-GKGNKMM 679


>gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
 gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826]
          Length = 749

 Score =  513 bits (1320), Expect = e-143,   Method: Composition-based stats.
 Identities = 227/716 (31%), Positives = 346/716 (48%), Gaps = 61/716 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +   ++ +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 7   EQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSAR 66

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQD++ R  L++GQGN+GS D DP   AA RYTE R
Sbjct: 67  TVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSAD-DPKSFAAMRYTESR 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  LL +L + TV++  N+DG+ QEP  L AR PN+L+NGG GIAVGMATN+  HN
Sbjct: 126 LTGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHN 185

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGV 253
           LGEVV  C A+I +P +  DALM+ I  PDFPTG  ++  R  I   Y TGRG++ +R  
Sbjct: 186 LGEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRAT 245

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYRVVI 312
            H+E  +     I++ ++PYQV+ + + E+IA+ ++ K++  + DLRDESD     R+V+
Sbjct: 246 WHLEDGN-----IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVL 300

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++  L+  T L+  +S  M  +    +P+   L  IL+ ++ +REE V 
Sbjct: 301 VPRSNRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVR 360

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L+   +R H+L GL IA  NLDE++RIIR    P                    
Sbjct: 361 RRLNHRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEP-------------------- 400

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                          T  LSE Q  AIL  RL  L  L    IR E  +L  E +   ++
Sbjct: 401 ---------RPVLMATFALSEAQAEAILNTRLRHLARLEEIQIRAEQEALAAEQQHLHEL 451

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYV 548
           L SR RLL +I  EL +        RRT I+E    +  ++ +    E + + +S +G++
Sbjct: 452 LQSRERLLTLIADELAADAATYGDARRTVIIEREAAVALDETELTPSEAVTLILSKMGWI 511

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                   R  +      + +  ++ D         ++      +  G  Y   +  LP 
Sbjct: 512 --------RGGKGHAIDGAALTYKNGDAYLTQISGRSNQQACLLADNGRSYTLALHGLPS 563

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                          L+    I                  + A  +G       ++    
Sbjct: 564 ARSYGE--------PLSSSMSIDASAHIIAAAIIEPERRYLIAADNGYGFLIPGAELTSK 615

Query: 669 NRSGKIAMKLDSRDEILS-VETCTQENDILLTTKLGQCVRFPISAIRVF-AGRNSV 722
            +SGK  +        ++       E DIL  +  G+    P   I     G+ S 
Sbjct: 616 TKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPELAKGKGSQ 671


>gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18]
 gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902]
 gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945]
 gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136]
          Length = 765

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 229/736 (31%), Positives = 350/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N + +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +LS  +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLSDENEKRKLIIKEIQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 582 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 694 --KGKGLQIIGLNAGE 707


>gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
 gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99]
          Length = 757

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 234/737 (31%), Positives = 380/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I         G+  +S+    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----NLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN  E+V  CV ++DNP  DL+ LME + GPD+PT   +I  R  I
Sbjct: 176 ITGIAVGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y+TG+GSI  R V  +E        IV+T +P+Q +   +LE+IA  ++ K++  + 
Sbjct: 236 AKIYSTGKGSIKARAVYAVESGE-----IVITALPHQASGGKILEQIAAQMQAKKLPMVV 290

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+++  +      D ++  L+  T LQ  F VN+  +    KP+   L
Sbjct: 291 DLRDESDHENPVRIIVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNGKPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             IL  ++ FR   V RR  + L+K   R H+L  L +A  N+DEV+ IIR+  NP   +
Sbjct: 351 KQILTEWLEFRLTTVTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            +SE+Q  AIL+L+L  L  L    I 
Sbjct: 408 TELMSR--------------------------FQISEIQADAILDLKLRHLAKLEEVKIT 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E + L +E  +   +LSS  RL  +IK+EL+   +     RR+ +VE        +++ 
Sbjct: 442 SEQDELEVERDKLELLLSSDRRLKTLIKKELIHDGETYGDDRRSPLVERSESKALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              E + V +S  G+V        R  +        +  +  D      +  ++   +F 
Sbjct: 502 APVEAVTVVLSEKGWV--------RCAKGHDIDGHALSYKSGDGFLCSAVGRSNQPAVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  +      LP    +++G+ +    +L+ GE +  ++         +  + + A+
Sbjct: 554 GSTGRSFATDTHTLPSA--RSQGEPITTRFNLSPGEVMEHLLL------GDDEKFYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  +++  +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPQLVDKSKVESILAITNEGRMLLFSM 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            ++   +     G + I
Sbjct: 666 ESLPQLS--KGKGNKII 680


>gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
 gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B]
          Length = 902

 Score =  512 bits (1319), Expect = e-143,   Method: Composition-based stats.
 Identities = 246/801 (30%), Positives = 374/801 (46%), Gaps = 80/801 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
             +YL YA++V+  RA+P++ DG KPV RRIL  M +MG+++  + VK ARI G+V+GKY
Sbjct: 115 SQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDMYRMGLKFEGRSVKSARIVGDVLGKY 174

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ ++YDAL RMAQ +SLR  L+  +GNFGS DGD  AA RYTE RL   +  LL++
Sbjct: 175 HPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSRDGDSAAAMRYTETRLTPISQLLLEE 234

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           +   +VDF+PNYDG+FQEPV L A+ P VL+NG  GIAVGMAT IP HNLGEV   CV +
Sbjct: 235 VDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSSGIAVGMATEIPPHNLGEVAAACVRL 294

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++NPD DL+ ++E++  PDFP G   I  +  I+  Y +GRG + +R   H E  +  + 
Sbjct: 295 LENPDADLNEILELMPAPDFPCGGQIITPKDEIRAIYRSGRGKLRVRARWHFEDLARGQW 354

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVR-----EKRIVDIADLRDES----------DRQGYR 309
           Q+V+ E+P   +  ++L++I ++       +K+ +     + +S          D  G  
Sbjct: 355 QLVIDELPPAASARSILDRIEQISNPRPKKDKKTLSAKQQQAKSAMLSLLDNVRDESGKS 414

Query: 310 VVIEL-----KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
           V + L           D  +N L   T L+S   VN+V L    KP +  L+ IL+ ++A
Sbjct: 415 VDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPVNLVMLGLDGKPRQKGLLEILQDWIA 474

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR  VV RR++  L K  DR HVL G ++ + N+D V+ IIR + +P+            
Sbjct: 475 FRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNIDRVIAIIRNADDPKA----------- 523

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L++ Q   ILE+RL +L  L    I  EL  L  E
Sbjct: 524 ------------------DLIKEFGLTDRQADDILEIRLKQLARLAAIAIEKELAQLAKE 565

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 IL S   L     +E+ +       PRRT +         E     E + V +S
Sbjct: 566 RAGLEKILGSDGALKRQTAKEIEAAAKSFADPRRTVVE-EAEQAAHEVQTADEPVTVVIS 624

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        RA+   G   S +  +  D +       + + + F    G VY   V
Sbjct: 625 RKGFL--------RARTGHGHDCSLMSFKTGDGLEATIECRSSSQISFLDQAGRVYTLAV 676

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             LP G     G  L   + L +G +    +       +  N   V  T  G     K S
Sbjct: 677 SALPGGRGD--GSPLSAFVDLPKGAQPAGWIS------ADPNAAAVIVTSGGKGMVLKAS 728

Query: 664 DFIQINRSGKIAMKLDSRDEILSV-----ETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           D     ++G+  + L   + +L       +    E  I   +   + + FP+  +RV   
Sbjct: 729 DVSTRLKAGRDFVTLGEGESLLPPIELPLKAAQGEQLIACLSSSNRLLVFPLKEVRV--- 785

Query: 719 RNSVGVRG---ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             + G +G   ++L  G+ ++S+A+V    A         K   AQ          +   
Sbjct: 786 -TASGGKGMSFMTLETGESLVSVALVDERGAIVTGTGRGGKAREAQISKRILGGATLHRA 844

Query: 776 KNDSSVEGNISEERCQELKLK 796
           +    +  +   E    L L+
Sbjct: 845 RRGKVLALSWKAEHIAGLPLE 865


>gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190]
          Length = 780

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/736 (31%), Positives = 350/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 35  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 94

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 95  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 154

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 155 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 214

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 215 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 274

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N + +L +I E    K       L                   DESD  
Sbjct: 275 RVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 334

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 335 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 394

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 395 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 443

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 444 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 485

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +LS  +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 486 QGRLNILLSDENEKRKLIIKEIQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 544

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 545 EKGWI--------RSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDA 596

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 597 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 648

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 649 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMA 708

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 709 --KGKGLQIIGLNAGE 722


>gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 747

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 359/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  +  N+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 RQLLSEWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSEGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TEVPELD--KGKGNKIIEIPK 684



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  E+    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATEVPELDK-GKGNKII 680


>gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 767

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/736 (31%), Positives = 351/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EPV L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMEAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    ++ +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLGDENEKRKLMIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTVLPVVILDSLGRTYTLDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL+
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLA 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 696 --KGKGLQIIGLNTGE 709


>gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013]
          Length = 765

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/748 (30%), Positives = 354/748 (47%), Gaps = 76/748 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL+
Sbjct: 582 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLA 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSV------ETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHAD 745
                G++ I L   + +   A+    +
Sbjct: 694 --KGKGLQIIGLNASESLTHTAVSSEPE 719


>gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3]
 gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3]
          Length = 755

 Score =  512 bits (1318), Expect = e-142,   Method: Composition-based stats.
 Identities = 233/737 (31%), Positives = 374/737 (50%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN  E+V  CV ++DNP  DL  LME + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDVPPHNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  IE        +V++ +P+Q +   +LE+IA  ++ K++  + 
Sbjct: 236 AKIYQTGRGSIKARAVYTIENGE-----VVISALPHQASSGKILEQIAAQMQAKKLPMVT 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++  L+  T L+  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHESPVRMVIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR   V RR ++ L+K   R H+L  L IA  N+DEV+ IIRF  +P   +
Sbjct: 351 RELLTEWLVFRMTTVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDP---K 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            ELM R                            LS+ Q  AIL+L+L  L  L    I+
Sbjct: 408 AELMTR--------------------------FELSDKQADAILDLKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
           +E + L  E  +   +LSS  R+  +IK+EL+   ++    RR+ +V         +++ 
Sbjct: 442 SEQSELEAERDKLQLLLSSERRMKTLIKKELIKDGEDYGDDRRSPLVVRGESKALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +        +  +  D         ++   +F 
Sbjct: 502 VPAESVTVVLSEKGWV--------RCAKGHEVDGKSLSYKAGDEFLCSAPGRSNQPSVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  +  +   LP    +++G+ +    +L  G  +  ++   E +        + A+
Sbjct: 554 DTSGRAFATETHTLPSA--RSQGEPITTRFNLAPGATMEHVLLADESQCY------ILAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPI 710
             G        D I  N++GK  + L +  ++L  +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFIAANKDMISRNKAGKALLSLPANAKVLLPQKVDKSKAQSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+         G + I
Sbjct: 666 DALPQLT--KGKGNKII 680


>gi|261886133|ref|ZP_06010172.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 385

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 209/390 (53%), Positives = 286/390 (73%), Gaps = 5/390 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+I SS+++    I ++ + D ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M
Sbjct: 1   MEENIFSSNQD----IDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  ++GQGNFGSV
Sbjct: 57  NDLGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSV 116

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR PN+L+NG  
Sbjct: 117 DGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSS 176

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H+L E+V+G + ++D+ ++ L+ +M  I+GPDFPTG +I G+ GI  A
Sbjct: 177 GIAVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIFGKKGIIEA 236

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG I +R  +HIEK   +++ IVV E+PYQVNKA +   IA+LV+EK I  I+++R
Sbjct: 237 YKTGRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVR 295

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK 
Sbjct: 296 DESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKL 355

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           F+  R+ V++RRT + L KAR RAH+L G 
Sbjct: 356 FLNHRKTVIIRRTIFELQKARARAHILEGF 385


>gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491]
 gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594]
          Length = 765

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/736 (31%), Positives = 350/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T           
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIVKEMQADMKQFGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTILPVVILDSSGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 582 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATNQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 694 --KGKGLQIIGLNAGE 707


>gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
 gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14]
          Length = 765

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/736 (31%), Positives = 347/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP HNL EV    +A+
Sbjct: 140 IHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G   I     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +     P           Y++  +  G     KL 
Sbjct: 582 AEIPGGRGD--GVPISSLIELQNGAK-----PVAMLTGLPEQHYLLSGS-GGYGFIAKLG 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRAIAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 694 --KGKGLQIIGLNAGE 707


>gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110]
 gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110]
          Length = 798

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 246/784 (31%), Positives = 373/784 (47%), Gaps = 83/784 (10%)

Query: 1   MTEHIISSD-EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     D +    G T++++ D  Q +YL YA++V+ GRA+PD+ DG KPV RRIL+ 
Sbjct: 1   MDDSQPPLDLQGPTDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYS 60

Query: 60  MMQMGVEWNK-------KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           M +MG+ +         K VK AR+ G+V+G++HPH + A YDAL RMAQD+S R  L +
Sbjct: 61  MSRMGLGFGGANGTVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLAD 120

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           GQGNFGS DGD  AA RYTE RL +    LLD++ + TVDF PNYDGS +EP +L AR P
Sbjct: 121 GQGNFGSRDGDGAAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLP 180

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID-NPDIDLDALMEIIRGPDFPTGAVI 231
             L+NG  GIAVG+AT IP+HNL E+ D CVA+I  N  +  + L++I+ GPD+P GA I
Sbjct: 181 FTLLNGASGIAVGLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQI 240

Query: 232 L-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           + G   I +AY TGRGS+ +R    IE  +  + Q+VV E+P  V+   +LE+I E+   
Sbjct: 241 ISGPADIADAYRTGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNP 300

Query: 291 KRIVDIADL-------------------RDESDRQGYRVVIELKRGASA-DVILNQLYRY 330
           K       L                    + S     R+V E K    + D  +  L   
Sbjct: 301 KVKAGKKALSADQTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQ 360

Query: 331 TSLQSLFSVN-MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
           TSL++   +N  +     KP + +L  +L  ++AFRE  V +R+++ LNK  DR H+L G
Sbjct: 361 TSLETSSPINLTMVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEG 420

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
             + + N+DEV+ IIR + +P+ A                                   L
Sbjct: 421 RQLVLLNIDEVIAIIRAAEDPKAA-----------------------------LIARFNL 451

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           SEVQ   ILE+RL +L  L    I+ +L+ L  E K+  DIL S + L  ++ +E+ +  
Sbjct: 452 SEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEADA 511

Query: 510 DELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              + PRRT I      +  E  +V E + V VS  G+V+             G      
Sbjct: 512 KTFEDPRRTLIQAEKRAV-AEVKVVDEPVTVIVSQKGWVRAQKGWASEKAAGNGGTAPEY 570

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSS----LGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             +  D +   F   +  ++L F S       VY   V  LP       G+ +  ++ L+
Sbjct: 571 SFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGARGD--GQPVTTLIELD 628

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
            G             +      V+ A   G      + + +   R GK  + +   +++ 
Sbjct: 629 AGTH------VTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQLC 682

Query: 686 SVETCTQEN---------DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                   +          +   +  G+ + F I+ ++    +   G+  I L   D + 
Sbjct: 683 RPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLP-KGGRGLTLIDLDAKDTLA 741

Query: 737 SMAI 740
             A 
Sbjct: 742 GAAA 745


>gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
 gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis
           ATCC 13091]
          Length = 780

 Score =  512 bits (1317), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/741 (31%), Positives = 351/741 (47%), Gaps = 76/741 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +    + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE
Sbjct: 30  LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           ++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A 
Sbjct: 90  ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAE 149

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL ++ + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV  
Sbjct: 150 LLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQ 209

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKT 259
             +A++  P ++   LM+ I  PDF  G  I+     ++  Y TG+G + +R    IEK 
Sbjct: 210 AAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGRVRVRARYEIEKL 269

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------D 301
           +  + +++VTE+P   N A +L +I E    K       L                   D
Sbjct: 270 ARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRD 329

Query: 302 ESD-RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGIL 358
           ESD     R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL
Sbjct: 330 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 389

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           + ++ FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+T      
Sbjct: 390 QEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKT------ 443

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                                         L+E+Q   ILE+RL +L  L    +  ELN
Sbjct: 444 -----------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELN 480

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            L  E      +LS  +    +I +E+ +   +    RRT +               E +
Sbjct: 481 ELREEQGRLNILLSDENEKRKLIVKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPI 539

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            + +S  G++        R++       S    ++ D +       T   V+   S G  
Sbjct: 540 TLILSEKGWI--------RSRAGHNLDLSQTAFKEGDCLKQTLEGRTILPVVILDSSGRT 591

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y      +P G     G  + +++ L  G +   ++            + + ++  G   
Sbjct: 592 YTLDAAEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGF 643

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISA 712
             KL D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  
Sbjct: 644 IAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGE 703

Query: 713 IRVFAGRNSVGVRGISLAKGD 733
           +++ A     G++ I L  G+
Sbjct: 704 LKIMA--KGKGLQIIGLNAGE 722


>gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
 gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118]
          Length = 747

 Score =  511 bits (1316), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 363/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RNIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 KHLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  R+ D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYREGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSDGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TDVPELD--KGKGNKIIEIPK 684



 Score = 42.5 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S  +GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYREGDGLLA-AVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  ++    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDK-GKGNKII 680


>gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640]
 gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06]
          Length = 765

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/736 (31%), Positives = 350/736 (47%), Gaps = 76/736 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 20  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 80  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 428

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 429 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 470

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 471 QGRLNILLGDENEKRKLIVKEMQADMKQYGDARRTLVE-EAGRAVLTQTTADEPITLILS 529

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   SLG  Y    
Sbjct: 530 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDA 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 582 AEIPGGRGD--GVPISSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 633

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 634 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 693

Query: 718 GRNSVGVRGISLAKGD 733
                G++ I L  G+
Sbjct: 694 --KGKGLQIIGLNAGE 707


>gi|116090719|gb|ABJ55986.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 325

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 197/321 (61%), Positives = 256/321 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 61  DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 121 TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 181 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+
Sbjct: 241 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYK 300

Query: 330 YTSLQSLFSVNMVALNGYKPE 350
            T+LQ+ F +N++AL   +P+
Sbjct: 301 QTALQTSFGINLLALVDGQPK 321


>gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 747

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 362/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R     E        I +  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RNIYETGHGSVRARATYKKE-----HANIFIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 KHLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAEERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSQKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSDGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TDVPELD--KGKGNKIIEIPK 684



 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  ++    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDK-GKGNKII 680


>gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
 gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937]
          Length = 747

 Score =  511 bits (1315), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 360/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RNIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 RQLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDSLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSEGRAYSTAVHTLPSARG--------NGEPLTGRFSPGSGASFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +LS    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TDVPELD--KGKGNKIIEIPK 684



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDSLLA-AVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +         +F+L  S  G+G  T      ++ R+  G    +++ 
Sbjct: 577 LTGRFSPGSGASFQVMASADNATRFVL-ASSHGYGFVTRFE--NLTGRNKAGKAMLNLTA 633

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
            +    +++   V++   D+I+ V+  G L+ VP  ++    +  KG  I 
Sbjct: 634 GS---HVLSPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDK-GKGNKII 680


>gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 747

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 363/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI++ M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +LG+ T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RNIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  +++FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 KHLLSEWLSFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  R+ D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYREGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSDGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TDVPELD--KGKGNKIIEIPK 684



 Score = 42.5 bits (98), Expect = 0.34,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S  +GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYREGDGLLA-AVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  ++    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDK-GKGNKII 680


>gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4]
 gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4]
          Length = 755

 Score =  510 bits (1314), Expect = e-142,   Method: Composition-based stats.
 Identities = 232/737 (31%), Positives = 374/737 (50%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN  E+V  CV ++DNP  DL  LME + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDVPPHNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  +E        IV+T +P+Q +   +LE+IA  ++ K++  + 
Sbjct: 236 TKIYQTGRGSIKARAVYTVENGE-----IVITALPHQASSGKILEQIASQMQAKKLPMVT 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R++I  +      D ++  L+  T LQ  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHESPVRMIIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + +L  ++ FR   V RR +Y L+K   R H+L  L IA  N+DEV+ IIR++ +P+   
Sbjct: 351 LELLTEWLTFRMTTVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                         +LI                 LS+ Q  AIL+L+L  L  L    I+
Sbjct: 408 -------------AELISR-------------FALSDKQADAILDLKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +LSS  R+  +IK+EL+   ++    RR+ +VE         ++ 
Sbjct: 442 GEQSELEAERDKLQLLLSSERRMKTLIKKELIKDGEDYGDERRSPLVERTESKALTQQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +        +  +  D         ++   +F 
Sbjct: 502 VAVESVTVVLSEKGWV--------RCAKGHEVDGQSLSYKAGDSFLRSAQGRSNQPSVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  +      LP    +++G+ +    +L  G  +  ++       S +    + A+
Sbjct: 554 DTSGRAFATDTHTLPSA--RSQGEPITTRFNLAPGTTMEHLLL------SDDEQCYLLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  ++L  +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFICANKDMVSRNKAGKALLSLPANAKVLLPQKVDKSKPQSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 DALPQLS--KGKGNKII 680


>gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
 gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1]
          Length = 767

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 358/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris]
          Length = 747

 Score =  510 bits (1313), Expect = e-142,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 358/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT   +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 KHLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLIARFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQLMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S  NN   V A+
Sbjct: 554 DSDGRAYSTLVHTLPSARG--------NGEPLTGRFSPASGASFQVLASGENNARFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +    
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAITA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           S +         G + I + K
Sbjct: 666 SDLPELD--KGKGNKLIEIPK 684



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +     +   +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGASFQVLASGENNARFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGA 635

Query: 835 INEIGALVAVFPV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V     D+I+ V+  G L+ +  +++    +  KG  + 
Sbjct: 636 -----HVLTPAQVLNPQTDRIVAVTSAGNLLAITASDLPELDK-GKGNKLI 680


>gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18]
 gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332]
 gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
 gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18]
 gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332]
 gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2]
          Length = 767

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 357/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPISSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
 gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090]
          Length = 767

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 357/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18]
 gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1]
 gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
 gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19]
 gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62]
          Length = 767

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 357/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPISSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140]
 gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679]
 gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679]
 gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679]
          Length = 767

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 357/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPISSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11]
 gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11]
 gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291]
 gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11]
          Length = 767

 Score =  510 bits (1312), Expect = e-142,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 357/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
 gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865]
          Length = 747

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 359/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 RQLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLMAKFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + L IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQILAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDSLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSEGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGASFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +  ++L+    T    + I+  T  G  +    
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSDRIVAVTSAGNLLAVAA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           S +         G + I + K
Sbjct: 666 SDVPELD--KGKGNKIIEIPK 684



 Score = 44.4 bits (103), Expect = 0.098,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDSLLA-AVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGASFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGA 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V +  +D+I+ V+  G L+ V  +++    +  KG  I 
Sbjct: 636 -----QVLTPAQVTNPQSDRIVAVTSAGNLLAVAASDVPELDK-GKGNKII 680


>gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum
           HRM2]
 gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2]
          Length = 753

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 229/729 (31%), Positives = 363/729 (49%), Gaps = 62/729 (8%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           +G          + +YL Y++ VIL RA+P + DGLKPV RRI++ M Q+G+  + K+ K
Sbjct: 10  EGFEKQPFDTFAETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLGLSSSSKHKK 69

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  +AQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 70  SARTVGDVLGKYHPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPD-DPKSFAAMRYT 128

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL   A  LL +L     ++ PN+DG+  EP +L AR PN+L+NG  GIAVGMAT+IP
Sbjct: 129 ESRLSTYADILLSELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIAVGMATDIP 188

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVI 250
            HNL EV    V ++D+PD  +D L E I+GPD+PT   +I   + I+  Y TG G I +
Sbjct: 189 PHNLTEVAQALVHLLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYKTGNGRIKM 248

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR-QGYR 309
           R   H++        IVVT +P+  +   +LE+IA  ++ K++  + DLRDESD  +  R
Sbjct: 249 RAKFHVDDGD-----IVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDESDHEEPTR 303

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL-KAFVAFREEV 368
           +VI  K   +   +++ L+  T L+  + +NM  +          + ++   ++AFR + 
Sbjct: 304 LVIIPKARTNTTALMDHLFATTDLERSYRINMNMIGINGRPEVKPLQVILSEWLAFRIDT 363

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V +R  + L+K  DR H+L GL  A  N+DE++ IIR S  P   +  LM+R        
Sbjct: 364 VRKRISHRLDKVNDRLHLLEGLLTAFLNIDEIIAIIRNSDEP---KPVLMER-------- 412

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS+ Q  AILE++L  L  L    I+ E +SL  E ++  
Sbjct: 413 ------------------FNLSDRQATAILEIKLRNLAKLEEIKIQAEKDSLDSERQQLE 454

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLG 546
            IL+S  RL  +IK+E+ +        RR+ I E        +E+ I  E M V +S  G
Sbjct: 455 KILASDKRLRTLIKREIQADAKTHGDLRRSPIFERKEAEAFSEEEVIQIEPMTVILSKNG 514

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +         R  +        +  +  D +       ++   +FF S G  Y      L
Sbjct: 515 WA--------RTAKGHDIDIEKLKFKFGDDLLVTAPTMSNRPAVFFDSSGRSYSIATHTL 566

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              S +  G+ L   L+L     I +++         ++   +  T  G     + S+ I
Sbjct: 567 --ASARTMGEPLTGRLTLKPENHIISLVT------GEDDDLFLLYTNTGFGFITRFSNLI 618

Query: 667 QINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             +R+GK  + ++   E ++ E     + + +   T  G+ + FP+  + +       G 
Sbjct: 619 AKSRTGKAVLTVEEFSEFMAPEPLKNPETDLLAAVTTSGRLIIFPVREMPIME--KGKGN 676

Query: 725 RGISLAKGD 733
           + I + K  
Sbjct: 677 KIIGIPKNQ 685



 Score = 42.1 bits (97), Expect = 0.39,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 59/215 (27%), Gaps = 30/215 (13%)

Query: 708 FPISAI---RVFA--------GRNSVG----VRGISLAKGDQVISMAIVLHADADYDERI 752
           F    +                R + G    +  +    GD +  +              
Sbjct: 495 FSEEEVIQIEPMTVILSKNGWARTAKGHDIDIEKLKFKFGDDL--LVTAPTMSNRPAVFF 552

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                  +           +             +          +   L  +  GFG  T
Sbjct: 553 DSSGRSYSIATHTLASARTMGEPLTGRLTLKPENHIISLVTGEDDDLFLLYTNTGFGFIT 612

Query: 813 SSYDFRISNRSGKGIRATD-VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
              +    +R+GK +   +  S+      L       + D +  V+  G LI  PV E+ 
Sbjct: 613 RFSNLIAKSRTGKAVLTVEEFSEFMAPEPLKN----PETDLLAAVTTSGRLIIFPVREMP 668

Query: 872 IASRATKGVVIFSTAKD-------ERVVSVERIRE 899
           I  +  KG  I    K+       ER+ +++ + E
Sbjct: 669 IMEK-GKGNKIIGIPKNQLSVPGTERIKTLKLLPE 702


>gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 747

 Score =  509 bits (1311), Expect = e-142,   Method: Composition-based stats.
 Identities = 237/741 (31%), Positives = 359/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL ++ + T D+  N+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++D+PD  +  L E + GPD+PT   +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  + VN+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 KHLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLIARFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E ++ L IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKEREQILSILGSKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTYHVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S  NN   V A+
Sbjct: 554 DSDGRAYSTLVHTLPSARG--------NGEPLTGRFSPASGASFQVLASGENNARFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+       Q + I+  T  G  +    
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAITA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           S +         G + I + K
Sbjct: 666 SDLPELD--KGKGNKLIEIPK 684



 Score = 39.8 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +     +   +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGASFQVLASGENNARFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGA 635

Query: 835 INEIGALVAVFPV--NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V     D+I+ V+  G L+ +  +++    +  KG  + 
Sbjct: 636 -----HVLTPAQVLNPQTDRIVAVTSAGNLLAITASDLPELDK-GKGNKLI 680


>gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035]
 gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035]
 gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035]
          Length = 767

 Score =  509 bits (1310), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 356/775 (45%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV++ IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKAIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 747

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 236/741 (31%), Positives = 359/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  +  N+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 RQLLSEWLTFRSDTVTRRLNHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    RR+ +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARRSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSEGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TEVPELD--KGKGNKIIEIPK 684



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  E+    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATEVPELDK-GKGNKII 680


>gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 747

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 235/741 (31%), Positives = 358/741 (48%), Gaps = 67/741 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    +      G   + + +  + +YL Y++ V+L RA+P L DGLKPV RRI+F M
Sbjct: 1   MTDLTRPT----FHGFEQLPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  SELGLNAAAKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGST 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   A  LL +L + T D+ PN+DG+ +EP  L AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPIAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGI 237
             GIAVGMAT++P HNL E+V   + ++DNPD  +  L E + GPD+P T  +I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y TG GS+  R     E        IV+  +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 RAIYETGHGSVRARATYKKE-----HANIVIDALPYQVSPSKVIEQIAQQMRAKKLPWLE 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           D+RDESD     RVV+  +     A+ ++  L+  T L+  +  N+  +    +P+   L
Sbjct: 291 DIRDESDHTSPVRVVLVPRSNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  ++ FR + V RR  + L K   R H+L GL IA  NLDEV+RI+R    P+   
Sbjct: 351 RQLLSEWLTFRSDTVTRRLDHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   ILE +L +L  L    IR
Sbjct: 408 --------------------------PVLISRFALSEEQAEYILETKLRQLARLEEMKIR 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDC 532
            E  +L  E  + + IL S+++L  +IK EL +   +    R + +V+      +++ + 
Sbjct: 442 GEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDARLSPLVQRGAAQAIDETEM 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E M V +S  G+V        RA +      +G+  RD D +       +   V F 
Sbjct: 502 VASEPMTVVLSEKGWV--------RAAKGHEVDPAGMSYRDGDGLLAAVRSRSTHQVAFL 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            S G  Y   V  LP            N   L       +   F    S+ N    V A+
Sbjct: 554 DSEGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATRFVLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPI 710
            HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  +  P 
Sbjct: 606 SHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAVPA 665

Query: 711 SAIRVFAGRNSVGVRGISLAK 731
           + +         G + I + K
Sbjct: 666 TEVPELD--KGKGNKIIEIPK 684



 Score = 42.1 bits (97), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 518 RAAKGHEVDPAGMSYRDGDGLLA-AVRSRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEP 576

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 577 LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  E+    +  KG  I 
Sbjct: 636 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATEVPELDK-GKGNKII 680


>gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345]
 gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345]
          Length = 755

 Score =  508 bits (1309), Expect = e-141,   Method: Composition-based stats.
 Identities = 231/737 (31%), Positives = 378/737 (51%), Gaps = 67/737 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ I    +    G+  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDAI----DLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ TVD+  N+DG+ +EP+VL AR P++L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HN+ E+V  CV ++DNP  DL  LME + GPD+PT   +I     I
Sbjct: 176 ITGIAVGMATDVPPHNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADI 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGSI  R V  +E        +V+T +P+Q +   +LE+IA  ++ K++  + 
Sbjct: 236 TKIYQTGRGSIKARAVYTVENGE-----VVITALPHQASSGKILEQIASQMQAKKLPMVT 290

Query: 298 DLRDESDRQ-GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      + ++  L+  T LQ  + VN+  L    +P+   L
Sbjct: 291 DLRDESDHESPVRMVIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGL 350

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + +L  ++ FR   V RR +Y L+K   R H+L  L IA  N+DEV+ IIR++ +P+   
Sbjct: 351 LELLTEWLTFRMTTVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDPK--- 407

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                         +LI                 LS+ Q  AIL+L+L  L  L    I+
Sbjct: 408 -------------AELISR-------------FNLSDKQADAILDLKLRHLAKLEEFKIK 441

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDC 532
            E + L  E  +   +LSS  R+  +IK+EL+   ++    RR+ +VE        +++ 
Sbjct: 442 AEQSELEAERDKLQLLLSSERRMKTLIKKELIKDSEDYGDERRSPLVERTESRALTEQEL 501

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +  E + V +S  G+V        R  +        +  +  D         ++   +F 
Sbjct: 502 VPVESVTVVLSEKGWV--------RCAKGHEVDGKSLSYKAGDGFLRSAQGRSNQPSVFI 553

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
            + G  +  +   LP    +++G+ +    +L  G  +  ++   E++        + A+
Sbjct: 554 DTSGRAFATETHTLPSA--RSQGEPITTRFNLASGATMEHLLLSDEEQCY------LLAS 605

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE--NDILLTTKLGQCVRFPI 710
             G        D +  N++GK  + L +  ++L  +   +     IL  T  G+ + F +
Sbjct: 606 DAGYGFICANKDMVSRNKAGKALLSLPANAKVLFPQRVDKSKAQSILAITNEGRMLLFSL 665

Query: 711 SAIRVFAGRNSVGVRGI 727
            A+   +     G + I
Sbjct: 666 DALPQLS--KGKGNKII 680


>gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
 gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945]
          Length = 767

 Score =  508 bits (1307), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 357/775 (46%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                 +L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|160892780|ref|ZP_02073570.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
 gi|156865821|gb|EDO59252.1| hypothetical protein CLOL250_00311 [Clostridium sp. L2-50]
          Length = 759

 Score =  507 bits (1306), Expect = e-141,   Method: Composition-based stats.
 Identities = 229/778 (29%), Positives = 375/778 (48%), Gaps = 43/778 (5%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I +V    EM  SY+ Y+++VI  RA+PD+RDGLKPV RRIL+ +  +    +K + 
Sbjct: 2   SEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPHR 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCARI G+ MGKYHPHG+++IY+ L  MAQ+W L + L++  GNFGSVDG   AA RYTE
Sbjct: 61  KCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGAAAMRYTE 120

Query: 133 CRLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            R+ K    + + DL      F PN+DG+  EP  L  + PN+LV+G  GIAVGMATNIP
Sbjct: 121 ARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIP 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
           THNLGEV+D  V  +++P++ L+ L+++++GPDF TG +I   +  +   Y TG G I +
Sbjct: 181 THNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIKV 240

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQV--NKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           RG   I      R+ I VTEIP+ +    A  L+ +AEL R + +  + D+ D  D+ G 
Sbjct: 241 RGKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKNGE 300

Query: 309 RVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            + I++K+G + + I    N LY+   L+  F VN+  +   KPE   L  IL  +  F+
Sbjct: 301 CLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCIYDGKPEVMGLRRILSIYTDFK 360

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +   +   LL    +   +  GL  AV  +D ++ I+R S     A+  LM    +  
Sbjct: 361 YGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDTS-- 418

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                 ++      +      +  +E Q  AIL +RL +L GL  + ++ EL      IK
Sbjct: 419 ------NITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIK 472

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           +   +L S+S +   +  ++L +K++   PR+T I +    +  +   V  ++ V +   
Sbjct: 473 KYSKLLESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAVETEVAVLLDRF 532

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K V  ++Y   +           + +      F       V  F+    +Y  KV  
Sbjct: 533 YYIKVVDANLYDKNKA----------QIDKDYRFSFKCKNTERVGVFADNNQMYMIKVAD 582

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN-------------NLYVVFAT 652
           +     +       N   L        I  F     + N             +  ++F T
Sbjct: 583 IIKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVT 642

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           KHG  +    +++  +     IA      D I+ +     E+ I++ + LG   R  IS 
Sbjct: 643 KHGQAKLVPGNNYDVLR--KMIAASKQEED-IIFIHDAEMEDFIVVKSMLGYYARIQISE 699

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           I    G+ +  +R +++   D++  +A+    D+ + +    +       +  S  T+
Sbjct: 700 I-PVKGKGAGCIRLVNITDDDEIEEVAVGSTKDSFFVDNTEILFTRIKACKRGSKGTK 756



 Score = 44.4 bits (103), Expect = 0.085,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 9/159 (5%)

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           M  V        ++    K   +       D         + +   NI    C E  + +
Sbjct: 577 MIKVADIIKLQAKKNTGKKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQII-D 635

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           + +L V++ G  K     ++ +        +    SK  E   ++ +      D I++ S
Sbjct: 636 KNLLFVTKHGQAKLVPGNNYDVLR------KMIAASKQEE--DIIFIHDAEMEDFIVVKS 687

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G   R+ ++EI +  +    + + +   D+ +  V  
Sbjct: 688 MLGYYARIQISEIPVKGKGAGCIRLVNITDDDEIEEVAV 726


>gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6]
 gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6]
          Length = 774

 Score =  507 bits (1304), Expect = e-141,   Method: Composition-based stats.
 Identities = 242/765 (31%), Positives = 373/765 (48%), Gaps = 81/765 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             +   ++    +T   +    + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +M
Sbjct: 9   STLPPGDDGGDALT---LAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMQRM 65

Query: 64  GVEWNK----KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           G+ +      K VKCAR+ G+V+G+YHPHG+ A YDAL RMAQD+S R  L++GQGNFGS
Sbjct: 66  GLAFAGAGGAKPVKCARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQGNFGS 125

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DGD  AA RYTE RL   A  LLD++ + T+DF PNYDGS +EP +L AR P VL+NG 
Sbjct: 126 RDGDGAAAMRYTEARLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVLLNGA 185

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIK 238
            GIAVG+AT +P+HNL EV    VA+I +  +  + L  ++  PD+P G  I+     I+
Sbjct: 186 SGIAVGLATEVPSHNLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSETDIR 245

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA- 297
            AY TGRGS+ +R    IE+ +  + Q+VVTE+P   +   +LE+I EL   K       
Sbjct: 246 EAYRTGRGSLKVRARWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKAGKKA 305

Query: 298 -----------------DLRDESDRQGY-RVVIELK-RGASADVILNQLYRYTSLQSLFS 338
                             +RDES++    R+V E + R      ++  L  +TSL+    
Sbjct: 306 LSTEQVQNKALLLSVLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLECSAP 365

Query: 339 VNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +N+  +    +P + +L  IL  ++ FR+  V RRT++ L +  DR HVL G  + + N+
Sbjct: 366 INLTMVGADGRPTQKSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLVLLNI 425

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR S  P+ A                                   LS+ Q   I
Sbjct: 426 DEVIRIIRESDEPKAA-----------------------------LIARFALSDRQAEDI 456

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
           LE+RL +L  L    I  EL  L  E  +  DIL++   L  ++ +E+ +        RR
Sbjct: 457 LEIRLRQLARLEAIRIEQELAELRTEQGKLDDILANPGTLRRLLIREIEADAKAHGDARR 516

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           T I      +  E  +V E + + VS  G+V        RA+   G   +G   +  D +
Sbjct: 517 TLIQAEKRAV-VEVKVVDEPVTLVVSQKGWV--------RARTGHGHDPAGFAFKAGDGL 567

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
              F   T  +++   S G VY   V  LP       G  + +++ L  G +I   +   
Sbjct: 568 YGTFECRTVDALVVLGSDGRVYSVPVNTLPGARGD--GVPITSLIELEAGSQILHYIA-- 623

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDI 696
                  +  ++ A   G     ++ D I   + GK  + L+  +  L       +   +
Sbjct: 624 ----GSASTPLLLAHSGGTGLLAQIGDLISRQKGGKAFLTLEPSERCLPPLPVALEHRQV 679

Query: 697 LLTTKLGQCVRFPISAI--RVFAGRNSVGVRGISLAKGDQVISMA 739
              +  G+ + F +  +  +   GR   G+  + L + D + ++A
Sbjct: 680 ACLSSSGRLLVFGLDELKRQPNGGR---GLMLMDLDEADALAAVA 721


>gi|225353986|gb|ACN88536.1| DNA gyrase subunit A [Arcobacter sp. CL-S1]
          Length = 470

 Score =  506 bits (1303), Expect = e-141,   Method: Composition-based stats.
 Identities = 224/496 (45%), Positives = 322/496 (64%), Gaps = 27/496 (5%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           +IL+ M  + +     Y K ARI G+V+GKYHPHG++++YDAL R+AQ++S+R  L++GQ
Sbjct: 1   KILYAMHDLNMTARSPYKKSARIVGDVIGKYHPHGDSSVYDALVRLAQNFSMRAPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGSVDGD  AA RYTE R+ K +  +L DL KDTV+F  NYD + +EP VL  R P +
Sbjct: 61  GNFGSVDGDNAAAMRYTEARMTKISEEILKDLDKDTVNFVQNYDDTLKEPAVLPTRVPTL 120

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NG  GIAVGMAT IP HNL E+++  +  IDN +   + LM+ I+GPDFPTG  I GR
Sbjct: 121 LLNGSEGIAVGMATKIPPHNLKELLEAVLYTIDNQEATAEDLMQFIQGPDFPTGGTIFGR 180

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            GI +AY TGRG + IR   HIE   G +E IV+ E+PYQVNK+ ++E+IA L +EK + 
Sbjct: 181 RGIIDAYKTGRGRVKIRAKHHIET-KGKKEVIVLDELPYQVNKSRLIEQIAILAKEKNVE 239

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+++RDESDR+G RVVIELK+ A ++++LN LY+ T +++ F + ++A++  +P+ F L
Sbjct: 240 GISEVRDESDREGIRVVIELKKDAMSEIVLNNLYKSTPMETTFGIILLAVHNKEPKVFNL 299

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ F++ R+ V++RRT + L KA+ RAH+L GL IAV N+DEVV+IIR S N   A+
Sbjct: 300 PELLRLFLSHRKTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAK 359

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
            +L +R                            LS +Q++AIL++RL RLTGL RD + 
Sbjct: 360 EKLQER--------------------------FELSLIQSQAILDMRLGRLTGLQRDKLE 393

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            +   +   I E   IL S  +L  IIK+E+  +K++    RR  I +   +++ ED I 
Sbjct: 394 ADYQDILRLIHELEAILKSEEKLNEIIKEEIQEIKEKYSDERRREIEDSYDEIDIEDLIP 453

Query: 535 REDMVVTVSHLGYVKR 550
            E M V ++  GYVKR
Sbjct: 454 NEPMAVNITRNGYVKR 469


>gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c]
 gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c]
          Length = 749

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 233/760 (30%), Positives = 366/760 (48%), Gaps = 73/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+    S      G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRPS----FHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGI 237
             GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A  I   + +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 QNLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLD 290

Query: 298 --DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
              +RDESD +   R+V+  +      + ++  L+  T L+    VN+  +    +P+  
Sbjct: 291 GEGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  +++FR + V  R KY L K   R H+L GL IA  NLD+V+ IIR    P+ 
Sbjct: 351 PLKQLLSEWLSFRSDTVTHRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPK- 409

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                                               LS+ QT  IL+ +L +L  L    
Sbjct: 410 ----------------------------PVLIARFGLSDAQTEYILDTKLRQLARLEEMA 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDE 530
           IRNE ++L  E  E   IL S  +L  +IK ELL+        RR  +V       +++ 
Sbjct: 442 IRNEQDALTKERDEINVILDSDIQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDES 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E M V +S  G++        RA +      SG+  R+ D +       +   V 
Sbjct: 502 ELVASEPMTVVLSEKGWI--------RAAKGHEVDPSGMSYREGDRLLAAVRTRSTHQVS 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y   V  LP            N   L           F    S+ N+   V 
Sbjct: 554 FLDSEGRAYSTLVHTLPSARG--------NGEPLTGRFSPAPGASFQAMASADNDKLFVL 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
           A+ HG     +  +    N++GK  + L    +++ +   T    + I+  T  G  +  
Sbjct: 606 ASSHGYGFITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLTDVRHDRIVAVTSAGNLLAI 665

Query: 709 PISAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHA 744
             S +         G + I + K     ++++++  V  +
Sbjct: 666 AASELPELD--KGKGNKLIDIPKTKLATERLVAVIAVASS 703



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 18/192 (9%)

Query: 719 RNSVGVR----GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S  +GD++++ A+   +           +  S     +         
Sbjct: 520 RAAKGHEVDPSGMSYREGDRLLA-AVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEP 578

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +        + F+L  S  G+G  T      ++ R+  G     ++ 
Sbjct: 579 LTGRFSPAPGASFQAMASADNDKLFVL-ASSHGYGFITRFE--NLTGRNKAGKTMIHLTP 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----D 888
                 ++ + P+ D  +D+I+ V+  G L+ +  +E+    +  KG  +    K     
Sbjct: 636 G---AQVMGLAPLTDVRHDRIVAVTSAGNLLAIAASELPELDK-GKGNKLIDIPKTKLAT 691

Query: 889 ERVVSVERIRES 900
           ER+V+V  +  S
Sbjct: 692 ERLVAVIAVASS 703


>gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
 gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02]
          Length = 768

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 230/776 (29%), Positives = 358/776 (46%), Gaps = 77/776 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 -QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD- 304
            +++VTE+P   N A +L +I E    K       L                   DESD 
Sbjct: 262 RRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDG 321

Query: 305 RQGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFV 362
               R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++
Sbjct: 322 EHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWL 381

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+           
Sbjct: 382 DFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA---------- 431

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E+Q   ILE+RL +L  L    +  ELN L  
Sbjct: 432 -------------------DLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELRE 472

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           E      +L   +    +I +E+ +   +    RRT +               E + + +
Sbjct: 473 EQGRLNILLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLIL 531

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           S  G++        R++       S    ++ D +       T   V+   S G  Y   
Sbjct: 532 SEKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSID 583

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +P G     G  + +++ L  G +   ++            + + ++  G     KL
Sbjct: 584 AAEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKL 635

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVF 716
            D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ 
Sbjct: 636 GDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIM 695

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           A     G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 A--KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 749


>gi|116090721|gb|ABJ55987.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 325

 Score =  506 bits (1302), Expect = e-141,   Method: Composition-based stats.
 Identities = 193/325 (59%), Positives = 259/325 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 181 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+
Sbjct: 241 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYK 300

Query: 330 YTSLQSLFSVNMVALNGYKPERFTL 354
            T+LQ+ F +N++AL   +P+   L
Sbjct: 301 QTALQTSFGINLLALVDGQPKVLNL 325


>gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 767

 Score =  505 bits (1299), Expect = e-140,   Method: Composition-based stats.
 Identities = 230/775 (29%), Positives = 355/775 (45%), Gaps = 76/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+   Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G++        R++       S    ++ D +       T   V+   S G  Y    
Sbjct: 532 EKGWI--------RSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDA 583

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 584 AEIPGGRGD--GVPISSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 635

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 636 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 695

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 696 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 748


>gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae]
          Length = 768

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 227/775 (29%), Positives = 352/775 (45%), Gaps = 75/775 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           + +YL YA++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKY
Sbjct: 22  ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL +
Sbjct: 82  HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + + TVDF PNYDG+F EP+ L AR P VL+NG  GIAVGMAT IP+HNL EV    +A+
Sbjct: 142 INQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +  P ++   LM+ I  PDF  G  I+     ++  Y TG+GS+ +R    IEK +  + 
Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR------------------DESD-R 305
           +++VTE+P   N A +L +I E    K       L                   DESD  
Sbjct: 262 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDESDGE 321

Query: 306 QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVA 363
              R+V E K      D  +N L   TSL+   S+N+V +    +P +  L  IL+ ++ 
Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR   V RR K+ LN+   R H+L G      ++DEV+++IR S +P+            
Sbjct: 382 FRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA----------- 430

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                    L+E+Q   ILE+RL +L  L    +  ELN L  E
Sbjct: 431 ------------------DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREE 472

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
                  L   +    +I +E+ +   +    RRT +               E + + +S
Sbjct: 473 QGRLNIFLGDENEKRKLIIKEMQADMKQFGDARRTLVE-EAGRAVLTQTAADEPITLILS 531

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G+++          +   K    +    E           H   +     G  Y    
Sbjct: 532 EKGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGPHCF---TRRHPRFI----RGRTYSIDA 584

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +P G     G  + +++ L  G +   ++            + + ++  G     KL 
Sbjct: 585 AEIPGGRGD--GVPVSSLIELQNGAKPVAMLT------GLPEQHYLLSSSGGYGFIAKLG 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVE------TCTQENDILLTTKLGQCVRFPISAIRVFA 717
           D +   ++GK+ M  DS + +L             +  I+  T   + + FPI  +++ A
Sbjct: 637 DMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIAATSQNRALAFPIGELKIMA 696

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
                G++ I L  G+ +   A+    +   +           +  +   + +  
Sbjct: 697 --KGKGLQIIGLNAGESMTHTAVSSEPEILIESEGRRGAAHKDRLPVALIEAKRG 749


>gi|254417301|ref|ZP_05031045.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196175954|gb|EDX70974.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 748

 Score =  504 bits (1297), Expect = e-140,   Method: Composition-based stats.
 Identities = 254/836 (30%), Positives = 399/836 (47%), Gaps = 128/836 (15%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYD 158
           M Q++S R  L+ G GNFGSVD DPPAA RYTE RL   +H  LL ++G+ TVDF  N+D
Sbjct: 1   MVQEFSTRYPLLAGHGNFGSVDNDPPAAMRYTETRLSPISHEALLSEIGEATVDFIDNFD 60

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS QEPVVL A+ P +L+NG  GIAVGMATNIP HNLGE+VDG +A+ID PD+  + L +
Sbjct: 61  GSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGEIVDGLIALIDRPDLADEKLWK 120

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ------IVVTEIP 272
           +I GPDFPTG  I+  +GI++AY++GRG I +RG++ +E+    R +      ++VTE+P
Sbjct: 121 LIPGPDFPTGGEIIDTSGIRDAYSSGRGIIPVRGIAKVEEIQVGRTRRHRRTALIVTELP 180

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKAA +EKIA+LV   R+  IADLRDESDR+G RVV+ELKR A    +L  LY+ T 
Sbjct: 181 YQVNKAAWIEKIADLVNHGRLDGIADLRDESDRRGMRVVVELKRDAHPRDVLKHLYKQTP 240

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQS F   M+AL   +P +  L   L+ F+ FRE+ + R+  Y L++ R R H++ GL +
Sbjct: 241 LQSNFGAIMLALVNGQPRQLALRQCLEEFLRFREQTLTRQYTYELDQKRQRRHLVEGLLV 300

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            +  L  V+ I+  +P+  TA+ +  ++                          + LSE 
Sbjct: 301 CLNQLTRVIEILTNAPDGTTAKTQFQEQ--------------------------LNLSES 334

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL + + RLTGL R  ++ E   L   I+   ++LSSR  LL  +K+EL S+K + 
Sbjct: 335 QADAILAMPMRRLTGLERQKLQTEFEELTARIETLQELLSSRHELLKTLKKELRSLKRKY 394

Query: 513 DTPRRTRIVEGLLDMEDEDCIVR------------------------------EDMVVTV 542
             PRRT+I       E +                                   E  V+  
Sbjct: 395 ADPRRTKIRSAQSLKEPKQPKSEKQTRKKAKTSDTPKTSASKSPSPNLIETEAEQTVLEF 454

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++ G+V+R+  +     +   K          DFV      +T +     +S G  Y  K
Sbjct: 455 TYQGHVQRLRSAPDPKSKPSIKD-------GNDFVIQTQQTTTASEFATLTSGGKAYPLK 507

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  +P  + + +G  +  +L      +  T++          ++ ++  T+ G V+R   
Sbjct: 508 VQDIPPAAGRKQGIPVTRLLP--DAAQSETVIAHFRPHELTESVSLILLTQQGRVKRLPA 565

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR-VFAGRNS 721
           ++ + +   G   +KL   D +  V      +D+++ T  G+ +RF I+       GR +
Sbjct: 566 TELLNLTARGLTTVKLKEEDVLAYVTLAQSTDDLIIATSNGRLLRFEINDQNLPIMGRTA 625

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            G + + L + +Q++    +   +                                    
Sbjct: 626 QGNQALRLRRREQLVGCVAIAPNEN----------------------------------- 650

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             +L VSE+G+GKR      R   R   G +A           L
Sbjct: 651 ------------------LLLVSEQGYGKRIGLGVVRRIKRGDLGTQALQFKT--STDRL 690

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + V   +  +  +L++    ++ V +  +++  +   G  +     +E ++ V  I
Sbjct: 691 IGVINASQTETAVLLTSDERVMTVSLKSVKLLGKDGCGDRLVKLKSNETIIDVTTI 746



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 55/146 (37%), Gaps = 10/146 (6%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF-R 818
                          L + +  E  I+  R  EL      IL ++++G  KR  + +   
Sbjct: 512 PPAAGRKQGIPVTRLLPDAAQSETVIAHFRPHELTESVSLIL-LTQQGRVKRLPATELLN 570

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRA 876
           ++ R   G+    + + +    L  V      D +I+ +  G L+R  +N+  + I  R 
Sbjct: 571 LTAR---GLTTVKLKEEDV---LAYVTLAQSTDDLIIATSNGRLLRFEINDQNLPIMGRT 624

Query: 877 TKGVVIFSTAKDERVVSVERIRESEI 902
            +G       + E++V    I  +E 
Sbjct: 625 AQGNQALRLRRREQLVGCVAIAPNEN 650


>gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 781

 Score =  503 bits (1296), Expect = e-140,   Method: Composition-based stats.
 Identities = 243/747 (32%), Positives = 366/747 (48%), Gaps = 71/747 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
           SV + D     YL YAI V+ GRA+PD++DGLKPV RR+LF M ++G+    K VK AR+
Sbjct: 35  SVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVKSARV 94

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ + YDA+ R+AQ + LR  L++GQGNFGS DGD  AA RYTE RL  
Sbjct: 95  VGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEARLTA 154

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL +LG+ TVDF+PNYDGSF EP  L AR P +L+NG  GIAVGMAT IP+HNL E
Sbjct: 155 IAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSHNLRE 214

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVSHI 256
           V    +  I++P   LD LME I GPD+P G   I     I  AYA+GRGS+ +R     
Sbjct: 215 VAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRARYEF 274

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR----------- 305
           E+ +    Q+V  E+P  V+ A +L +I  L+  +       +   + +           
Sbjct: 275 EEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMASQLDR 334

Query: 306 --------QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-NGYKPERFTLI 355
                      R+V E        +  +  L  +TSL++   +N+VA+    +P + +L 
Sbjct: 335 ARDESGKDDDVRLVFEPSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQKSLT 394

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ++  +  FR   V RRT++ L KA DR H+L G  I   N+DEV+RIIR S +P+ A  
Sbjct: 395 DLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPKAA-- 452

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                                            LS+ Q   ILE+RL +L  L    I  
Sbjct: 453 ---------------------------LIARFTLSDRQAEDILEIRLRQLARLEGIRIEQ 485

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE-DCIV 534
           EL+ L  E +  L +L S + L   + +E+ +  ++    RRT I+        E   + 
Sbjct: 486 ELDKLRGEREGLLKLLGSDALLRRQVIREIKADAEKHGDARRTIILAATTASRSEVAAVA 545

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V +S  G+         R ++  G   SGVV +D D         +  S++  SS
Sbjct: 546 DEPVTVIISEKGWA--------RVRQGHGLDLSGVVFKDGDRAGSAQECRSVDSLVIISS 597

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  +   +  LP G  +  G  L + + L  G+            +   +  ++FA   
Sbjct: 598 EGRAFTVAIASLPDG--RGMGAPLSSFVDLGGGK-------IAHVLTGRADDELLFAKTS 648

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G        D +   ++GK  + ++    IL       ++ +   ++ G+ + FP++ ++
Sbjct: 649 GYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPLRIAGKDHLAALSEDGRLLVFPLAQMK 708

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIV 741
             A  +  GV+ I L   + + ++  V
Sbjct: 709 RLA--SGKGVQIIGLRDAETLRAVLAV 733


>gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12]
 gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Dixon]
 gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12]
          Length = 749

 Score =  503 bits (1295), Expect = e-140,   Method: Composition-based stats.
 Identities = 231/760 (30%), Positives = 366/760 (48%), Gaps = 73/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRP----FFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGI 237
             GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A  I   + +
Sbjct: 176 TTGIAVGMATDVPPHNLNEITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 QNLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLD 290

Query: 298 --DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
              +RDESD +   R+V+  +      + ++  L+  T L+    VN+  +    +P+  
Sbjct: 291 GEGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  +++FR + V RR KY L K  +R H+L GL I   NLD+V+ IIR    P+ 
Sbjct: 351 PLKQLLSEWLSFRSDTVTRRLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIRNEDEPK- 409

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                                               LS+ QT  IL+ +L +L  L    
Sbjct: 410 ----------------------------PVLIARFGLSDAQTEYILDTKLRQLARLEEMA 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDE 530
           IR+E ++L  E  E   IL S  +L  +IK ELL+        RR  +V       +++ 
Sbjct: 442 IRSEQDALTKERDEINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDES 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E M V +S  G++        RA +      SG+  R+ D +       +   V 
Sbjct: 502 ELVASEPMTVVLSEKGWI--------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVS 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y   V  LP            N   L           F    S+ N+   V 
Sbjct: 554 FLDSEGRAYSTLVHTLPSARG--------NGEPLTGRFSPAPGASFQAMASADNDKLFVL 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
           A+ HG     +  +    N++GK  + L    +++ +   T    + I+  T  G  +  
Sbjct: 606 ASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAI 665

Query: 709 PISAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHA 744
             S +         G + I + K     ++++++  V  +
Sbjct: 666 AASELPELD--KGKGNKLIDIPKTKLATERLVAVIAVASS 703



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 18/192 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S  +GD++++ A+   +           +  S     +         
Sbjct: 520 RAAKGHDVDPSGMSYREGDRLLA-AVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEP 578

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +        + F+L  S  G+G  T      ++ R+  G     ++ 
Sbjct: 579 LTGRFSPAPGASFQAMASADNDKLFVL-ASSHGYGFITRFE--NLTGRNKAGKAMIHLTP 635

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----D 888
                 ++ + P+ D  +D+I+ V+  G L+ +  +E+    +  KG  +    K     
Sbjct: 636 G---AQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDK-GKGNKLIDIPKTKLAT 691

Query: 889 ERVVSVERIRES 900
           ER+V+V  +  S
Sbjct: 692 ERLVAVIAVASS 703


>gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23]
 gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1]
 gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23]
          Length = 749

 Score =  503 bits (1294), Expect = e-140,   Method: Composition-based stats.
 Identities = 232/760 (30%), Positives = 365/760 (48%), Gaps = 73/760 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRP----FFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGI 237
             GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A  I     +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 QNLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLD 290

Query: 298 --DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
              +RDESD +   R+V+  +      + ++  L+  T L+    VN+  +    +P+  
Sbjct: 291 GEGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  +++FR + V RR KY L K   R H+L GL IA  NLD+V+ IIR    P+ 
Sbjct: 351 PLKQLLSEWLSFRSDTVTRRLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPK- 409

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                                               LS+ QT  IL+ +L +L  L    
Sbjct: 410 ----------------------------PVLIARFGLSDAQTEYILDTKLRQLARLEEMA 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDE 530
           IR+E ++L  E  E   IL S  +L  +IK ELL+        RR  +V       +++ 
Sbjct: 442 IRSEQDALTKERDEINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDES 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E M V +S  G++        RA +      SG+  R+ D +       +   V 
Sbjct: 502 ELVASEPMTVVLSEKGWI--------RAAKGHDVDPSGMFYREGDRLLAAVRTRSTHQVS 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y   V  LP            N   L           F    S+ N+   V 
Sbjct: 554 FLDSEGRAYSTLVHTLPSARG--------NGEPLTGRFSPAPGASFQAMASADNDKLFVL 605

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
           A+ HG     +  +    N++GK  + L    +++ +   T    + I+  T  G  +  
Sbjct: 606 ASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVTSAGNLLAI 665

Query: 709 PISAIRVFAGRNSVGVRGISLAK----GDQVISMAIVLHA 744
             S +         G + I + K     ++++++  V  +
Sbjct: 666 AASELPELD--KGKGNKLIDIPKTKLATERLVAVIAVASS 703



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+   +GD++++ A+   +           +  S     +         
Sbjct: 520 RAAKGHDVDPSGMFYREGDRLLA-AVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEP 578

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +        + F+L  S  G+G  T      ++ R+  G     ++ 
Sbjct: 579 LTGRFSPAPGASFQAMASADNDKLFVL-ASSHGYGFITRFE--NLTGRNKAGKAMIHLTP 635

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----DER 890
             ++  L  +  V  +D+I+ V+  G L+ +  +E+    +  KG  +    K     ER
Sbjct: 636 GAQVMGLAPLTNVQ-HDRIVAVTSAGNLLAIAASELPELDK-GKGNKLIDIPKTKLATER 693

Query: 891 VVSVERIRES 900
           +V+V  +  S
Sbjct: 694 LVAVIAVASS 703


>gi|331678181|ref|ZP_08378856.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
 gi|331074641|gb|EGI45961.1| DNA gyrase/topoisomerase IV, A subunit [Escherichia coli H591]
          Length = 344

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 192/321 (59%), Positives = 247/321 (76%), Gaps = 1/321 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
            +E      RE I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+ G R+VIE
Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306

Query: 314 LKRGASADVILNQLYRYTSLQ 334
           +KR A  +V+LN LY  T LQ
Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQ 327


>gi|302864518|ref|YP_003833155.1| DNA gyrase subunit A [Micromonospora aurantiaca ATCC 27029]
 gi|302567377|gb|ADL43579.1| DNA gyrase, A subunit [Micromonospora aurantiaca ATCC 27029]
          Length = 1259

 Score =  502 bits (1293), Expect = e-140,   Method: Composition-based stats.
 Identities = 262/731 (35%), Positives = 401/731 (54%), Gaps = 44/731 (6%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TEC+L   A  +L D+ +DTVD + NYDG  +EP +L +R PN+L+NG  GIAVGMAT I
Sbjct: 562  TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 621

Query: 191  PTHNLGEVVDGCVAVIDNPD----IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            P HNL E+       +++P+      L+AL+EI++GPDFPT  +I+G+ GI++AY TGRG
Sbjct: 622  PPHNLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIVGQAGIQDAYRTGRG 681

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
            SI +R V  +E+    R  +VV+E+PYQVN   + E+IAEL++E ++  IAD+RDES  R
Sbjct: 682  SIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGR 741

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
             G R+V+ LKR A A V+LN LY++T LQ  F  NM+AL    P    L   ++ +V  +
Sbjct: 742  TGMRIVLVLKRDAVAKVVLNNLYKHTQLQETFGANMLALVDGVPRTLNLAQFIRYYVEHQ 801

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             EV+ RRT + L KA +RAH+L GL+ A+  LDEV+ +IR SP  E AR+ L+       
Sbjct: 802  IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLI------- 854

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                 + + EVQ  AIL+++L RL  L R  I ++L  L +EI 
Sbjct: 855  -------------------RLLDIDEVQATAILDMQLRRLAALERQRILDDLAKLEVEIA 895

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
            +  DIL+   R   I+ +EL  +  +    RRT+IV    ++  ED I RED+VVT++  
Sbjct: 896  DLKDILAKPERQRRIVSEELGEIVAKWGDDRRTKIVPFDGEVSMEDLIAREDVVVTITRT 955

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            GY KR  + +YR+QRRGGKG SG  +R +D V+  F+ STH  +LFF++ G VY+ K + 
Sbjct: 956  GYAKRTKVDLYRSQRRGGKGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYE 1015

Query: 606  LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
            LP  S  A+G+ + N+L+    E+I  I+  P  +      Y+V ATK+G V++ +L +F
Sbjct: 1016 LPEASRVAKGQHVANLLAFQPDEQIAQIIEIPNYQV---APYLVLATKNGLVKKTRLEEF 1072

Query: 666  IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                  G IA+ L   DE++       E+D+LL +K  Q +RF  +   +R   GR + G
Sbjct: 1073 DSNRSGGIIAINLRDEDELVGAVLVAPEDDLLLVSKNAQAIRFNATDEALRPM-GRATSG 1131

Query: 724  VRGISLAKGDQVISMAIVLHA-DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            V G+  +  D+++++ +V    D        Y K    +   + G   +       +   
Sbjct: 1132 VIGMRFSGEDELLAVEVVREGLDVLVATNGGYAKRTPIEEYPVQGRGGKGVLTAKITERR 1191

Query: 783  GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN-RSGKGIRATDVSKINEIGAL 841
            G +       +   E  +  ++  G   RT     R +  R+  G++  D+     I  +
Sbjct: 1192 GGLV---GAVVIDPEDELFAITSNGGVIRTPVKPVRRTRDRNTMGVKLMDLPDGVTI--V 1246

Query: 842  VAVFPVNDNDQ 852
                  ++ D+
Sbjct: 1247 AIARNADEPDE 1257



 Score =  266 bits (679), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/184 (44%), Positives = 109/184 (59%), Gaps = 27/184 (14%)

Query: 1   MTEHIISSDEE-----------EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
           MT+   S+  E           +   I  V +  EMQ SYL YA++VI+GRA+PD+RDGL
Sbjct: 1   MTDTPESTPNEPETPEPLAAVVQHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGL 60

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHR+IL+ M   G   ++ YVKC+R+ G+VMG++HPHG++AIYDAL RMAQ WSLR  
Sbjct: 61  KPVHRKILYAMFDSGYRPDRGYVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYP 120

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++G GNFGS   DP AA RY           L  D+   TV      DG+ +   V+  
Sbjct: 121 LVDGNGNFGSPGNDPAAAMRY----------CLAADVRVRTV------DGTVRIGDVVPD 164

Query: 170 RYPN 173
             P+
Sbjct: 165 AAPS 168


>gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2]
          Length = 771

 Score =  502 bits (1293), Expect = e-139,   Method: Composition-based stats.
 Identities = 242/729 (33%), Positives = 351/729 (48%), Gaps = 75/729 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK----KYVKCAR 76
           + D  + +YL YA++V+ GRA+PD+ DG KPV RRIL+ M +MG+ +N     K VK AR
Sbjct: 18  LADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGAKPVKSAR 77

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+G+YHPHG+ A YDA+ RMAQD+S R  L++GQGNFGS DGD  AA RYTE RL 
Sbjct: 78  VVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEARLA 137

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  LLD++ + TVDF+PNYDGS QEP  L AR P VL+NG  GIAVG+AT IP+HNL 
Sbjct: 138 PIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATEIPSHNLR 197

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSH 255
           EV    V +I +P +  DAL  ++ GPDFP G  I+     I+ AYA+GRGS+ +R    
Sbjct: 198 EVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSLKVRARWT 257

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE------------- 302
           IE  +  + Q+VV E+P   +   +LE+I EL   K       L  E             
Sbjct: 258 IEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQTVLAVLD 317

Query: 303 ------SDRQGYRVVIELKRGASADV-ILNQLYRYTSLQSLFSVNMVALNGY-KPERFTL 354
                 S     R+V E K    +   ++  L   TSL+    VN+  +    +P + +L
Sbjct: 318 AVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADGRPTQKSL 377

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+ ++ FR++ V RRT++ L+K  +R HVL G  + + N+DEV+RIIR S  P  A 
Sbjct: 378 RQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRESDEPRAA- 436

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LSE Q   IL+LRL +L  L    I 
Sbjct: 437 ----------------------------LIARFNLSERQADDILDLRLRQLARLEAIKIE 468

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            EL  L        +IL+S + L   + +E+ +        RRT I E    +  E  +V
Sbjct: 469 QELKELRETQARLEEILASPAVLKRTLIREIEADAKACGDERRTLIQEERRAV-AEIRVV 527

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E + V VS  G+V        RA +     RS +  +  D +   F   +  ++L F  
Sbjct: 528 DEPVTVVVSQKGWV--------RALKGHEVERSTLGFKAGDALYATFACRSVDTLLVFGD 579

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY   V  LP G            + +     +          +   +  ++ A   
Sbjct: 580 RGRVYSVAVSSLPGGRGDG--------VPITTLIELEAGTAIAHYWAGAADTTLLLANSG 631

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAI 713
           G     K  D     R+GK  + L++ +  L        + +       G+ + +P+  +
Sbjct: 632 GFGLLAKAGDLHGRQRAGKSFLTLEAGERPLEPWAVAAGQTNAACLAADGRLLVYPLDEL 691

Query: 714 --RVFAGRN 720
             +   GR 
Sbjct: 692 KHQPNGGRG 700


>gi|56159832|gb|AAV80727.1| gyrase subunit A [Bacillus subtilis]
          Length = 321

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/320 (59%), Positives = 257/320 (80%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG+
Sbjct: 1   DYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           +A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT
Sbjct: 61  SAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDT 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD
Sbjct: 121 IDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPD 180

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
           I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE
Sbjct: 181 ITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTE 240

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           +PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ 
Sbjct: 241 LPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 300

Query: 331 TSLQSLFSVNMVALNGYKPE 350
           T+LQ+ F +N++AL   +P+
Sbjct: 301 TALQTSFGINLLALVDGQPK 320


>gi|225353988|gb|ACN88537.1| DNA gyrase subunit A [Arcobacter halophilus]
          Length = 456

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 226/482 (46%), Positives = 318/482 (65%), Gaps = 27/482 (5%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
             Y K ARI G+V+GKYHPHG++++YDAL RMAQ++S+R  L++GQGNFGSVDGD  AA 
Sbjct: 1   SPYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDNAAAM 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+ K +  +L D+ KDTV+F  NYD + +EP VL  R P +L+NG  GIAVGMAT
Sbjct: 61  RYTEARMTKVSEEILRDIDKDTVNFVQNYDDTLKEPAVLPTRVPTLLLNGSEGIAVGMAT 120

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP HNL E++D  + ++DN     + LM+ I+GPDFPTG  I GR GI +AY TGRG +
Sbjct: 121 KIPPHNLKELLDAVLYMVDNKGATAEDLMQFIQGPDFPTGGTIFGRRGIIDAYKTGRGRV 180

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR   HIE   G +E IV+ E+PYQVNK+ ++E+IA L ++K++  I+++RDESDR+G 
Sbjct: 181 KIRAKHHIET-KGKKEVIVLDELPYQVNKSRLIEQIATLAKDKQVEGISEVRDESDREGI 239

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELK+ A ++++LN LY+ T L++ F + ++A++  +P+ F L  +L  F++ R+ V
Sbjct: 240 RVVIELKKDAMSEIVLNNLYKSTPLETTFGIILLAVHNKEPKVFNLPELLNLFLSHRKTV 299

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KA+ RAH+L GL IA+ N+DEVV+IIR S N   A+ +L  R        
Sbjct: 300 IIRRTIFDLEKAKARAHILEGLKIALDNIDEVVQIIRSSANDAEAKEKLQDR-------- 351

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LS +Q++AIL++RL RLTGL RD +  E   L   I E  
Sbjct: 352 ------------------FGLSIIQSQAILDMRLGRLTGLQRDKLEAEYQELLALIAELE 393

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
            IL S  +L  IIK+E+  +K++    RRT I +   +++ ED I  E MVVT++H GYV
Sbjct: 394 SILKSEDKLNEIIKEEVAEIKEKYSDERRTEIEDSYDEIDIEDLIPNEPMVVTITHNGYV 453

Query: 549 KR 550
           KR
Sbjct: 454 KR 455


>gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
 gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 745

 Score =  502 bits (1292), Expect = e-139,   Method: Composition-based stats.
 Identities = 227/723 (31%), Positives = 371/723 (51%), Gaps = 62/723 (8%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
                SI    + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   K+ K 
Sbjct: 5   NFEQQSIAQFSERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAKFKKS 64

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG-DPPAAERYTEC 133
           AR  G+V+GK+HPHG++A Y+++  MAQ +S R   I+GQGN+G+ D     AA RYTE 
Sbjct: 65  ARTVGDVLGKFHPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMRYTES 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + A  LL ++ + TV++  N+DGS QEP  L A+ PN+L+NG  GIAVGMAT++P H
Sbjct: 125 KLSRYADLLLLEINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATDVPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRG 252
           NL EVV  C+ ++DNP IDLD +M+ I+ PD+PT A I+  +  ++  Y TG GS+ +R 
Sbjct: 185 NLIEVVSACIVLLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSVKMRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           V   EK +     IV+  +P+QV+ A ++ +I   +R K++  + D+RDESD +   R+V
Sbjct: 245 VYQKEKGN-----IVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENPTRIV 299

Query: 312 IELKRG-ASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           I L       D ++  L+  T L+  + VNM  +    KP    LI +LK ++++R +VV
Sbjct: 300 IILHSNRFDVDALMLHLFATTELEKNYRVNMNVIGLDGKPRVLPLIPMLKEWLSYRMQVV 359

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             R     +K   R H+L GL IA+ N++EV+ +IR    P+                  
Sbjct: 360 TNRLTCRFDKIIVRLHILKGLLIALLNINEVIAVIREYDKPK------------------ 401

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      +       L+ +Q  AILEL+L  L  L    IR E   L +E K+   
Sbjct: 402 -----------LVLINHFKLNTIQAEAILELKLRHLAKLEEVRIRTEQQELVLERKQLEL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLG 546
           +LSS SRL  +IK+EL  +  +    RR+ I   +       +++ ++ ED+ V +S+ G
Sbjct: 451 LLSSNSRLKSLIKKELKIIIKDFGDERRSNIKSNVNVAQAFSEDNLVLAEDVTVVLSNKG 510

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V+R         +      + +  +  D         ++  V+F  S G  Y      L
Sbjct: 511 WVRR--------VKGHDIDPTTLNYKAGDSYLTSVKGKSNKMVIFIDSTGRSYSLLAHSL 562

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              + + +G+ L   LS   G +   I+          +  ++ ++  G        D +
Sbjct: 563 --SNSRGQGEPLTGKLSPPLGAQFIDII------MGKTSQNILLSSDVGYGFIATFDDLL 614

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              ++GK+ + L    +++ V      ++  + L T  G+ + F IS + + +     G 
Sbjct: 615 SSRQTGKVFLSLSKGAQVMRVINVDDVDNQLVALATNRGRLLIFSISELPMLS--KGKGN 672

Query: 725 RGI 727
           + I
Sbjct: 673 KLI 675


>gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 745

 Score =  501 bits (1289), Expect = e-139,   Method: Composition-based stats.
 Identities = 231/729 (31%), Positives = 376/729 (51%), Gaps = 64/729 (8%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G++   ++ K A
Sbjct: 6   LEQQSVAEFSERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTARFKKSA 65

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTEC 133
           R  G+V+GK+HPHG++A Y+A+  MAQ +S R   I+GQGN+G+ D DP   AA RYTE 
Sbjct: 66  RTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPD-DPKSFAAMRYTES 124

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + +  LL ++ + TV++  N+DGS QEP  L A+ PN+L+NG  GIAVGM TN+P H
Sbjct: 125 KLSRYSDLLLSEINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTNVPPH 184

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRG 252
           NL EVV  C+A++D P +DLD +M+IIR PD+PT A I      ++  Y TG GS+ +R 
Sbjct: 185 NLTEVVSACIALLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSVKMRA 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVV 311
           +   EK +     IV+  +P+Q + A ++ +IA  +R K++  + D+RDESD +   R+V
Sbjct: 245 IYQKEKGN-----IVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENPTRIV 299

Query: 312 IELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           I  +      DV++  L+  T L+  + VNM  +    KP   +LI +LK ++++R +VV
Sbjct: 300 IIPRSNRVDVDVLMLHLFATTELEKSYRVNMNVIGLNGKPGVLSLIPMLKEWLSYRMKVV 359

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + R  Y L+K   R H+L GL IA  N+DEV+ IIR    P+                  
Sbjct: 360 INRLTYRLDKILVRLHILKGLLIAFLNIDEVIAIIREHDKPK------------------ 401

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      +       LS++Q  AILEL+L  L  L    I+ E   L +E ++   
Sbjct: 402 -----------LVLIDHFKLSDIQVEAILELKLRYLAKLEEIKIQAEQQDLALEKEKLKL 450

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL---LDMEDEDCIVREDMVVTVSHLG 546
           +LSS  RL  +IK+EL ++  +    RR+ I   +       ++D    E++ V +S  G
Sbjct: 451 LLSSDLRLKILIKKELKAIIKDFGDERRSNIKRNVNTAQAFSEDDLAPAENITVVLSEKG 510

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           +V        R+ +      + +  +  D         ++  V+F  S G  Y      L
Sbjct: 511 WV--------RSAKGYSIDPNTLNYKAGDSYLTSVKGKSNKPVIFIDSTGRSYSLLANSL 562

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                + +G+ L   LS     R   ++          +  ++ A+  G      + D +
Sbjct: 563 SSA--RGQGEPLTGKLSPPSEARFVDVI------MGKASQNILLASNIGYGFIATIGDLL 614

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
              ++GK    L    +++ +      ++  I L T  G+ + FPIS + + +     G 
Sbjct: 615 SSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPILS--KGKGS 672

Query: 725 RGISLAKGD 733
           + I ++  D
Sbjct: 673 KLIQISTKD 681


>gi|56159846|gb|AAV80734.1| gyrase subunit A [Bacillus sp. NRRL B-23964]
          Length = 327

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/325 (58%), Positives = 256/325 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TNHELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPERFTLIG 356
           +LQ+ F +N++AL   +P+  +L  
Sbjct: 301 ALQTSFGINLLALVDGQPKVLSLKH 325


>gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 719

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 230/701 (32%), Positives = 360/701 (51%), Gaps = 62/701 (8%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+HPHG++A Y+A+
Sbjct: 1   MDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MAQ +S R  L++GQGN+G+VD DP   AA RYTE RL K A  LL +LG+ TVD++P
Sbjct: 61  VLMAQPFSYRYPLVDGQGNWGAVD-DPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQP 119

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           N+DG+ +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ D  V ++DNP   LD 
Sbjct: 120 NFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDE 179

Query: 216 LMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
           L  +++GPDFPT   +I  +  I+  Y  GRGSI +R     E        IV+  +P+Q
Sbjct: 180 LSTVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRATWKKEDGE-----IVIRALPHQ 234

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTS 332
            + + ++ +IAE +  K++  + D+RDE+D +   R+V+  +      D ++  L+  T 
Sbjct: 235 SSPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTD 294

Query: 333 LQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           L+  + VNM  +   +KP    L+ IL  +++FR   V RR +Y LNK   R H+L GL 
Sbjct: 295 LEKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLM 354

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           IA  N+DEV+ IIR    P   + ELM R                            LS+
Sbjct: 355 IAFLNIDEVIHIIRHEDEP---KAELMAR--------------------------FNLSD 385

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q  AIL LRL  L  L   +++ E   L  E     +IL S  RL  ++K+E+      
Sbjct: 386 EQAEAILNLRLRHLAKLEEHELQAEQTELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 445

Query: 512 LDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
             +PRR+ +VE      + + + +  E + V +S +G+V        R  +       G+
Sbjct: 446 YASPRRSPLVERAEAKAIAENEMLPTEPVTVILSEMGWV--------RCAKGHDIDPQGL 497

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
             +  D         ++ + +F  S G  Y      LP    +++G+ L   L+L  G  
Sbjct: 498 SYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLMLPSA--RSQGEPLTGKLTLPAGAT 555

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           I  ++          +  ++ A+  G     K +D I  N++GK  + L    ++L   T
Sbjct: 556 IDQLL------IENEDQPLLMASDAGYGFICKFADLIARNKAGKALISLPENAKVLPPLT 609

Query: 690 CTQENDILLT-TKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
                 +L+  T  G+ + FP   +   +     G + +++
Sbjct: 610 LKNSTALLVALTSAGRMLIFPAQDLPELS--KGKGNKIVTI 648


>gi|56159842|gb|AAV80732.1| gyrase subunit A [Bacillus subtilis]
          Length = 320

 Score =  500 bits (1288), Expect = e-139,   Method: Composition-based stats.
 Identities = 191/319 (59%), Positives = 257/319 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI
Sbjct: 121 DYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 241 PYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPE 350
           +LQ+ F +N++AL   +P+
Sbjct: 301 ALQTSFGINLLALVDGQPK 319


>gi|56159858|gb|AAV80740.1| gyrase subunit A [Bacillus sp. NRRL B-23980]
          Length = 327

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 190/319 (59%), Positives = 254/319 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 121 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVALNGYKPE 350
           +LQ+ F +N++AL   +P+
Sbjct: 301 ALQTSFGINLLALVDGQPK 319


>gi|13810761|gb|AAK40025.1|AF272015_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 313

 Score =  499 bits (1285), Expect = e-139,   Method: Composition-based stats.
 Identities = 192/313 (61%), Positives = 251/313 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 1   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 61  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I
Sbjct: 121 DYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEI 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 181 TIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T
Sbjct: 241 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQT 300

Query: 332 SLQSLFSVNMVAL 344
           +LQ+ F +N++AL
Sbjct: 301 ALQTSFGINLLAL 313


>gi|56159844|gb|AAV80733.1| gyrase subunit A [Bacillus sp. NRRL B-23936]
          Length = 319

 Score =  498 bits (1283), Expect = e-138,   Method: Composition-based stats.
 Identities = 190/318 (59%), Positives = 253/318 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++
Sbjct: 2   YAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+
Sbjct: 62  AVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTI 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I
Sbjct: 122 DYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEI 181

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
               LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+
Sbjct: 182 TNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTEL 241

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T
Sbjct: 242 PYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQT 301

Query: 332 SLQSLFSVNMVALNGYKP 349
           +LQ+ F +N++AL   +P
Sbjct: 302 ALQTSFGINLLALVDGQP 319


>gi|83953740|ref|ZP_00962461.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841685|gb|EAP80854.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 358

 Score =  498 bits (1282), Expect = e-138,   Method: Composition-based stats.
 Identities = 204/349 (58%), Positives = 261/349 (74%), Gaps = 7/349 (2%)

Query: 1   MTEHIISSDEEEEKGIT-------SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           M +   + + ++E   T       SV+I  EM+ SYL YA++VI+ RAIPDLRDGLKPVH
Sbjct: 1   MNDTPETPENDDEIPATRPVYDGPSVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVH 60

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M + G+   K Y K A+  G+VMG YHPHG++AIYDAL RMAQD+S+ L LI+G
Sbjct: 61  RRIIYSMYEKGITHEKAYRKSAKSVGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDG 120

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE RL K A F+  DL K+TVDF  NYDG  +EP VL AR+PN
Sbjct: 121 QGNFGSMDGDSAAAMRYTESRLDKVASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPN 180

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG GGIAVGMATNIP HNLGEV+D C A+I+NPD+  + L+E I GPDFPTG ++LG
Sbjct: 181 MLVNGAGGIAVGMATNIPPHNLGEVIDACQALIENPDLTSEELIEYIPGPDFPTGGIMLG 240

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+G + AY  GRGS+++R  + +E+   DR  IV+ EI YQVNK+ M+EKIAE VREK+I
Sbjct: 241 RSGARKAYLEGRGSVIMRAKTRVEEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKI 300

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
             IA ++DESDR G RVVIELKR A+A+V++NQLYR+T +Q+ F  NM+
Sbjct: 301 DGIAHVQDESDRNGVRVVIELKRDATAEVVMNQLYRFTPMQTYFGCNML 349


>gi|47094547|ref|ZP_00232209.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017079|gb|EAL07950.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 440

 Score =  497 bits (1280), Expect = e-138,   Method: Composition-based stats.
 Identities = 201/464 (43%), Positives = 297/464 (64%), Gaps = 26/464 (5%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K + K A+  G V+G 
Sbjct: 1   MGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKGFRKSAKTVGNVIGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RYTE RL   +  LL 
Sbjct: 61  YHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRYTEARLSPISAELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+IP HNL E+++  + 
Sbjct: 121 DIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIK 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+R  + IE   G R+
Sbjct: 181 RLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRK 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+ +ELK+ A+A+ +L
Sbjct: 241 QITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R 
Sbjct: 301 NYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQ 360

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL  A++ LDEV+++IR S +   A+  L  +                        
Sbjct: 361 HILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK------------------------ 396

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                SE Q  AI+ L+L RLT     ++++E  SL  ++    
Sbjct: 397 --YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQLVFLK 438


>gi|56159836|gb|AAV80729.1| gyrase subunit A [Bacillus subtilis]
          Length = 319

 Score =  497 bits (1279), Expect = e-138,   Method: Composition-based stats.
 Identities = 190/318 (59%), Positives = 256/318 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSLFSVNMVALNGYKPE 350
           LQ+ F +N++AL   +P+
Sbjct: 301 LQTSFGINLLALVDGQPK 318


>gi|56159864|gb|AAV80743.1| gyrase subunit A [Bacillus sp. NRRL B-23970]
          Length = 323

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/321 (59%), Positives = 252/321 (78%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 183 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 242

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 243 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 302

Query: 330 YTSLQSLFSVNMVALNGYKPE 350
            T+LQ+ F +NM+AL     +
Sbjct: 303 QTALQTSFGINMLALVDGSRK 323


>gi|56159866|gb|AAV80744.1| gyrase subunit A [Bacillus sp. NRRL B-23982]
          Length = 320

 Score =  497 bits (1278), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/317 (60%), Positives = 251/317 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 3   LDYAMSVIVSRPLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 62

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 63  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 122

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 123 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 182

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 183 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 242

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 243 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 302

Query: 330 YTSLQSLFSVNMVALNG 346
            T+LQ+ F +NM+AL  
Sbjct: 303 QTALQTSFGINMLALVD 319


>gi|330685619|gb|EGG97263.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU121]
          Length = 402

 Score =  496 bits (1277), Expect = e-138,   Method: Composition-based stats.
 Identities = 183/397 (46%), Positives = 275/397 (69%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           GEV+   +  IDNPDI +  LM+ I+GPDFPTG +I G  GIK AY +G+G IV+R    
Sbjct: 185 GEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGIIQGLDGIKKAYESGKGKIVVRSKVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E+    R++++VTEIPY+VNK++++++I EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           +  +++ I N LY+ + LQ  ++ NMVA++  +P+   +  I+ +++  + EVV  RTK+
Sbjct: 305 KDVNSEAIKNFLYKNSDLQISYNFNMVAISDGRPKLMGIKQIIDSYINHQIEVVANRTKF 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  A  R H++ GL  A++ LDEV+ +IR S N + 
Sbjct: 365 DLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKE 401


>gi|284803500|emb|CBJ15406.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|284803669|emb|CBJ21240.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 312

 Score =  496 bits (1276), Expect = e-138,   Method: Composition-based stats.
 Identities = 191/312 (61%), Positives = 250/312 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I 
Sbjct: 121 YQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTA 300

Query: 333 LQSLFSVNMVAL 344
           LQ+ F +N++AL
Sbjct: 301 LQTSFGINLLAL 312


>gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1]
          Length = 742

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 224/728 (30%), Positives = 376/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
              +++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILIDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I +I             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       Q++ +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 58/189 (30%), Gaps = 24/189 (12%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I  AKG+ +    +    +           ++        G    +   K  S+      
Sbjct: 514 IRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSARGYGEH 573

Query: 787 EERCQELKLKEQFI-----------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 L  ++Q I           L  SE G      + D          +    V+  
Sbjct: 574 ITTYIPLDKQDQIISIAFVNAAGYFLIASESGKAFVIPAED----------LITNKVTGK 623

Query: 836 N--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           N  +   +    P + + +++ +S +G +I        +  +  KG  I    K +++  
Sbjct: 624 NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK-GKGKSIIRLDKKDKLKF 682

Query: 894 VERIRESEI 902
           +E  R ++ 
Sbjct: 683 IELFRANQE 691


>gi|56159848|gb|AAV80735.1| gyrase subunit A [Bacillus sp. NRRL B-23958]
          Length = 325

 Score =  495 bits (1273), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/323 (58%), Positives = 254/323 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIG 356
           Q+ F +N++AL   +P+  +L  
Sbjct: 301 QTSFGINLLALVDGQPKVLSLKH 323


>gi|56159830|gb|AAV80726.1| gyrase subunit A [Bacillus subtilis]
 gi|56159838|gb|AAV80730.1| gyrase subunit A [Bacillus subtilis]
 gi|56159840|gb|AAV80731.1| gyrase subunit A [Bacillus subtilis]
          Length = 318

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/317 (59%), Positives = 255/317 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
 gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG]
          Length = 742

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 222/728 (30%), Positives = 375/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++ NP+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               ++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       ++  +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 21/237 (8%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E +   +    +  +K G +R        +        +     D+   V T     
Sbjct: 492 ALEEKDLMPSEKVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNSNI 545

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++  +KLG+     I  +    G        I L K DQ+ISMA V  A         Y
Sbjct: 546 KLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAG--------Y 597

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               S   +      E++ + K       +  +        K+  +L VS +G       
Sbjct: 598 FLIASESGKAFVIPAEDLITNKVTGKNIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-LIRVPVNEI 870
             F +  +  KG     +   ++   L  +     N ++ L  + G   IR+    I
Sbjct: 658 ASFALLKKG-KGKSIIRL---DKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNI 708


>gi|56159850|gb|AAV80736.1| gyrase subunit A [Bacillus sp. NRRL B-23959]
          Length = 324

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 189/323 (58%), Positives = 254/323 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPERFTLIG 356
           Q+ F +N++AL   +P+  +L  
Sbjct: 301 QTSFGINLLALVDGQPKVLSLKH 323


>gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
 gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548]
          Length = 742

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/728 (30%), Positives = 374/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIEL 314
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +     V+   
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I +I             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKIT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       Q++ +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 24/189 (12%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I  AKG+ +    +    +           ++        G    +   K  S+      
Sbjct: 514 IRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSARGYGEH 573

Query: 787 EERCQELKLKEQFI-----------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 L  ++Q I           L  SE G      + D          +    ++  
Sbjct: 574 ITTYIPLDKQDQIISIAFVNAAGYFLIASESGKAFVIPAED----------LITNKITGK 623

Query: 836 N--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           N  +   +    P + + +++ +S +G +I        +  +  KG  I    K +++  
Sbjct: 624 NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK-GKGKSIIRLDKKDKLKF 682

Query: 894 VERIRESEI 902
           +E  R ++ 
Sbjct: 683 IELFRANQE 691


>gi|56159860|gb|AAV80741.1| gyrase subunit A [Bacillus sp. NRRL B-23954]
          Length = 318

 Score =  494 bits (1271), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/317 (59%), Positives = 251/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549]
          Length = 742

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/728 (30%), Positives = 374/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIEL 314
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +     V+   
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I +I             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKKDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKIT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       Q++ +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 40.2 bits (92), Expect = 1.8,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 58/189 (30%), Gaps = 24/189 (12%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I  AKG+ +    +    +           ++        G    +   K  S+      
Sbjct: 514 IRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSARGYGEH 573

Query: 787 EERCQELKLKEQFI-----------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 L  K+Q I           L  SE G      + D          +    ++  
Sbjct: 574 ITTYIPLDKKDQIISIAFVNAAGYFLIASESGKAFVIPAED----------LITNKITGK 623

Query: 836 N--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           N  +   +    P + + +++ +S +G +I        +  +  KG  I    K +++  
Sbjct: 624 NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK-GKGKSIIRLDKKDKLKF 682

Query: 894 VERIRESEI 902
           +E  R ++ 
Sbjct: 683 IELFRANQE 691


>gi|284803673|emb|CBJ21242.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 316

 Score =  493 bits (1270), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/316 (59%), Positives = 251/316 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I 
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 300

Query: 333 LQSLFSVNMVALNGYK 348
           LQ+ F +N++AL   +
Sbjct: 301 LQTSFGINLLALVDGQ 316


>gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           novicida U112]
 gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112]
 gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           novicida FTE]
          Length = 742

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 225/728 (30%), Positives = 374/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIEL 314
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +     V+   
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I +I             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISIAFVNA------AGYFLIASESGKAFVIPAEDLITNKIT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       Q++ +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFMPFDQDHKMLAISSQGRVI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 58/189 (30%), Gaps = 24/189 (12%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
           I  AKG+ +    +    +           ++        G    +   K  S+      
Sbjct: 514 IRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSARGYGEH 573

Query: 787 EERCQELKLKEQFI-----------LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                 L  ++Q I           L  SE G      + D          +    ++  
Sbjct: 574 ITTYIPLDKQDQIISIAFVNAAGYFLIASESGKAFVIPAED----------LITNKITGK 623

Query: 836 N--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           N  +   +    P + + +++ +S +G +I        +  +  KG  I    K +++  
Sbjct: 624 NIFDADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK-GKGKSIIRLDKKDKLKF 682

Query: 894 VERIRESEI 902
           +E  R ++ 
Sbjct: 683 IELFRANQE 691


>gi|56159854|gb|AAV80738.1| gyrase subunit A [Bacillus sp. NRRL B-23973]
 gi|56159856|gb|AAV80739.1| gyrase subunit A [Bacillus sp. NRRL B-23976]
          Length = 318

 Score =  493 bits (1269), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/317 (59%), Positives = 252/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|56159852|gb|AAV80737.1| gyrase subunit A [Bacillus sp. NRRL B-23977]
          Length = 317

 Score =  493 bits (1268), Expect = e-137,   Method: Composition-based stats.
 Identities = 188/317 (59%), Positives = 252/317 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|56159868|gb|AAV80745.1| gyrase subunit A [Bacillus sp. NRRL B-41004]
          Length = 320

 Score =  492 bits (1267), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/312 (59%), Positives = 247/312 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+ R +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG
Sbjct: 1   LDYAMSVIVSRXLPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 61  DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 121 TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 180

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 181 DITIQELMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 240

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+
Sbjct: 241 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYK 300

Query: 330 YTSLQSLFSVNM 341
            T+LQ+ F +  
Sbjct: 301 QTALQTSFGITC 312


>gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 741

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 222/728 (30%), Positives = 375/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P GA I+G +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               ++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +                        
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD------------------------ 402

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 403 -----SSGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------ARYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       ++  +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 21/237 (8%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E +   +    +  +K G +R        +        +     D+   V T     
Sbjct: 492 ALEEKDLMPSEKVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNSNI 545

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++  +KLG+     I  +    G        I L K DQ+ISMA V            Y
Sbjct: 546 KLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVN--------AARY 597

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               S   +      E++ + K       +  +        K+  +L VS +G       
Sbjct: 598 FLIASESGKAFVIPAEDLITNKVTGKNIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-LIRVPVNEI 870
             F +  +  KG     +   ++   L  +     N ++ L  + G   IR+    I
Sbjct: 658 ASFALLKKG-KGKSIIRL---DKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNI 708


>gi|56159828|gb|AAV80725.1| gyrase subunit A [Bacillus subtilis]
          Length = 316

 Score =  492 bits (1266), Expect = e-136,   Method: Composition-based stats.
 Identities = 189/316 (59%), Positives = 254/316 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVNMVALNGYKPE 350
           + F +N++AL   +P+
Sbjct: 301 TSFGINLLALVDGQPK 316


>gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 741

 Score =  491 bits (1265), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/728 (30%), Positives = 373/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               ++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQVLEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   + +  ++FFS LG  Y   + +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNGNIKLVFFSKLGKAYSMYIDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       ++  +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 75/236 (31%), Gaps = 21/236 (8%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
             E +   +    +  +K G +R        +        +     D+   V T      
Sbjct: 493 LEEKDLMPSEKVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNGNIK 546

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++  +KLG+     I  +    G        I L K DQ+ISMA V  A         Y 
Sbjct: 547 LVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAG--------YF 598

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              S   +      E++ + K       +  +        K+  +L VS +G        
Sbjct: 599 LIASESGKAFVIPAEDLITNKVTGKNIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDFA 658

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-LIRVPVNEI 870
            F +  +  KG     +   ++   L  +     N ++ L  + G   IR+    I
Sbjct: 659 SFALLKKG-KGKSIIRL---DKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNI 708


>gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 741

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/728 (30%), Positives = 374/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               ++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       ++  +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 41.3 bits (95), Expect = 0.77,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 21/237 (8%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E +   +    +  +K G +R        +        +     D+   V T     
Sbjct: 492 ALEEKDLMPSEKVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNSNI 545

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++  +KLG+     I  +    G        I L K DQ+ISMA V  A         Y
Sbjct: 546 KLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAG--------Y 597

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               S   +      E++ + K       +  +        K+  +L VS +G       
Sbjct: 598 FLIASESGKAFVIPAEDLITNKVTGKNIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-LIRVPVNEI 870
             F +  +  KG     +   ++   L  +     N ++ L  + G   IR+    I
Sbjct: 658 ASFALLKKG-KGKSIIRL---DKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNI 708


>gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica OSU18]
 gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FSC200]
 gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           holarctica 257]
 gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 741

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/728 (30%), Positives = 374/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               ++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP----------------------- 403

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 404 ------SGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------AGYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       ++  +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 75/237 (31%), Gaps = 21/237 (8%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E +   +    +  +K G +R        +        +     D+   V T     
Sbjct: 492 ALEEKDLMPSEKVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNSNI 545

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++  +KLG+     I  +    G        I L K DQ+ISMA V  A         Y
Sbjct: 546 KLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAG--------Y 597

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               S   +      E++ + K       +  +        K+  +L VS +G       
Sbjct: 598 FLIASESGKAFVIPAEDLITNKVTGKNIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-LIRVPVNEI 870
             F +  +  KG     +   ++   L  +     N ++ L  + G   IR+    I
Sbjct: 658 ASFALLKKG-KGKSIIRL---DKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNI 708


>gi|284803679|emb|CBJ21245.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 317

 Score =  491 bits (1263), Expect = e-136,   Method: Composition-based stats.
 Identities = 188/317 (59%), Positives = 250/317 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSKREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRCGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVALNGYKPE 350
           Q+ F +N++AL   +P+
Sbjct: 301 QTSFGINLLALVDGQPK 317


>gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523]
          Length = 741

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 224/728 (30%), Positives = 376/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  PD  ++ ++EII  PD+P G  +I  +  I   Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES-DRQGYRVVIE-L 314
           +        +V+T++P+QV+ AA++E+IA  +++++I  I +++DES D++  R+V+   
Sbjct: 251 DNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSA 306

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               +   I+  L   T L+  F VNM  +    +P+   L+ +LK ++ +R+  + RR 
Sbjct: 307 TTKKNIKKIIGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDVLKQWLEYRKNTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                       
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSD--------------------- 405

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 406 --------ELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++++        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILADFGDSRRSKVIAAEKAQALEEKDLMPSERVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   V +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYVDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------AEYFLIASESGKGFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       Q++ +L  +  G+ +      +R F+     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPFDQDHKMLAISSEGRII------VRDFSSFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 80/272 (29%), Gaps = 76/272 (27%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E +   +    +  +K G +R        +        +     D+   V T     
Sbjct: 492 ALEEKDLMPSERVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNSNI 545

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++  +KLG+     +  +    G        I L K DQ+ISMA V  A          
Sbjct: 546 KLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAA---------- 595

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                                      ++ L  SE G G    +
Sbjct: 596 -------------------------------------------EYFLIASESGKGFVIPA 612

Query: 815 YDFRISNRSGKGIRATDVSKIN--EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
            D          +    V+  N  +   +    P + + +++ +S +G +I   V +   
Sbjct: 613 ED----------LITNKVTGKNIFDADDVFKFIPFDQDHKMLAISSEGRII---VRDFSS 659

Query: 873 AS--RATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +  KG  I    K +++  +E  R ++ 
Sbjct: 660 FALLKKGKGKSIIRLDKKDKLKFIELFRANQE 691


>gi|313633454|gb|EFS00280.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 407

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 185/404 (45%), Positives = 280/404 (69%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTSEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +D P    + +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDKPLSTTEEIMKIVKGPDFPTGGIIQGIDGIRKAYETGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G R+QI + EIPY+VNKA +++++ EL  EK+I  I+++RDE+DR G R+
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELRIEKKIEGISEVRDETDRTGLRI 302

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +ELK+ A+A+ +LN L++ T LQ  ++ NMVA++  +PE   +I +L A++  ++E++ 
Sbjct: 303 AVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAIHNKRPELMGIIPMLDAYIEHQKEIIT 362

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           +R+++ + KAR R H+L GL  A++ LDEV+++IR S +   A+
Sbjct: 363 KRSEHDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK 406


>gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC198]
 gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 741

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 221/728 (30%), Positives = 374/728 (51%), Gaps = 71/728 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  G
Sbjct: 12  SVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVG 71

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQD+S R   I+GQGN+GS+D DP   AA RYTE RL K
Sbjct: 72  DVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLSK 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ E
Sbjct: 131 YAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITE 190

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSHI 256
           +++ C+ ++  P+  ++ ++EI+  PD+P G  +I  +  I + Y +G GSI  + V   
Sbjct: 191 IINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEY 250

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           +  S     +V+T++P+QV+ AA++E+IA  +++++I  I +++DESD +    ++    
Sbjct: 251 DNHSN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSA 306

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               ++  I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R+  + RR 
Sbjct: 307 TIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRL 366

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +  L+K  DR H+L GL IA  N+DEV+ IIR   +                        
Sbjct: 367 QTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD------------------------ 402

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                 +        LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+S
Sbjct: 403 -----SSGELQTRFTLSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKERELLEGYLNS 457

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKRV 551
             +   ++K+E   +  +    RR++I+        E  D +  E + + +S  G++   
Sbjct: 458 EVKFRNLMKKEFKQILTDFGDSRRSKIIVAEKAQALEEKDLMPSEKVTIILSKAGWI--- 514

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +      +G+  + ED    +   +++  ++FFS LG  Y   + +LP    
Sbjct: 515 -----RCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKLVFFSKLGKAYSMYIDKLPSA-- 567

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           +  G+ +   + L++ ++I ++             Y + A++ G        D I    +
Sbjct: 568 RGYGEHITTYIPLDKQDQIISMAFVNA------ARYFLIASESGKAFVIPAEDLITNKVT 621

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG----RNSVGVRGI 727
           GK    +   D++       ++  +L  +  G+ +      IR FA     +   G   I
Sbjct: 622 GK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI------IRDFASFALLKKGKGKSII 672

Query: 728 SLAKGDQV 735
            L K D++
Sbjct: 673 RLDKKDKL 680



 Score = 40.9 bits (94), Expect = 0.90,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 74/237 (31%), Gaps = 21/237 (8%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E +   +    +  +K G +R        +        +     D+   V T     
Sbjct: 492 ALEEKDLMPSEKVTIILSKAGWIR------CAKGENIDPAGLSYKPEDKPFLVTTGNSNI 545

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++  +KLG+     I  +    G        I L K DQ+ISMA V            Y
Sbjct: 546 KLVFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVN--------AARY 597

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
               S   +      E++ + K       +  +        K+  +L VS +G       
Sbjct: 598 FLIASESGKAFVIPAEDLITNKVTGKNIFDADDVFKFIPYDKDLKMLAVSSQGRAIIRDF 657

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT-LIRVPVNEI 870
             F +  +  KG     +   ++   L  +     N ++ L  + G   IR+    I
Sbjct: 658 ASFALLKKG-KGKSIIRL---DKKDKLKFIELFRANQELTL--NAGKRFIRIDSKNI 708


>gi|218134382|ref|ZP_03463186.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989767|gb|EEC55778.1| hypothetical protein BACPEC_02276 [Bacteroides pectinophilus ATCC
           43243]
          Length = 342

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 179/325 (55%), Positives = 240/325 (73%), Gaps = 5/325 (1%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
           DE     +  V +   M++SY+ YA++VI  RA+PD+RDGLKPV RRILF M+++    +
Sbjct: 2   DEHIFDKVHDVDLQKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILFSMIELNNGPD 61

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + KCARI G+ MGKYHPHG+++IY+AL ++AQD+S R  L++G GNFGSVDGD  AA 
Sbjct: 62  KPHRKCARIVGDTMGKYHPHGDSSIYEALVKLAQDFSTRYPLVDGHGNFGSVDGDGAAAM 121

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL + +  +L D+ K+TVDF PN+D + +EP VL +RYPN+LVNG  GIAVGMAT
Sbjct: 122 RYTEARLSRISMEMLADINKNTVDFIPNFDETEKEPTVLPSRYPNLLVNGTSGIAVGMAT 181

Query: 189 NIPTHNLGEVVDGCVAVIDNP-----DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           NIP HNL EV++  V +IDN      D  ++ ++ I++GPDFPTGA+ILG+ GI+ AY T
Sbjct: 182 NIPPHNLREVINAVVKIIDNQVEEDRDTTIEEILNIVKGPDFPTGAMILGKMGIEEAYRT 241

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRG I +R V+ IE  +  + +IVVTE+PY VNKA ++EKIAELVREK+I  I DLRDES
Sbjct: 242 GRGKIRVRAVTDIEPMANGKNRIVVTELPYMVNKAKLIEKIAELVREKKIDGITDLRDES 301

Query: 304 DRQGYRVVIELKRGASADVILNQLY 328
           DR G R+ IEL+R  + +++LNQL 
Sbjct: 302 DRSGMRISIELRRDVNPNIVLNQLL 326


>gi|302839180|ref|XP_002951147.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f. nagariensis]
 gi|300263476|gb|EFJ47676.1| hypothetical protein VOLCADRAFT_91671 [Volvox carteri f. nagariensis]
          Length = 1159

 Score =  490 bits (1262), Expect = e-136,   Method: Composition-based stats.
 Identities = 248/1021 (24%), Positives = 410/1021 (40%), Gaps = 161/1021 (15%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            E     +    + DE  NSYL+YA++VI+ RAIPD+RDGLKPVHRRIL+ M ++G+  NK
Sbjct: 113  EPVTGRVEDTELYDEAYNSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYAMHELGLVHNK 172

Query: 70   KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
             + KCAR+ GEV+GK+HPHG+ A+YD+L RMAQ +++R  L++G GNFGS+D DP AA R
Sbjct: 173  PFKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQPFAMRQTLVDGHGNFGSLDNDPAAAMR 232

Query: 130  YTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            YTECRL +AA   LL D+G DTVD++P +D S                       VG+A+
Sbjct: 233  YTECRLTRAAGEALLADIGPDTVDWQPTFDESQ----------------------VGLAS 270

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            NIP HNLGEVV    A+I +P +  + L++ +RGPDFPTG  ++    +   Y TGRGS+
Sbjct: 271  NIPPHNLGEVVSALRALITDPRVTTEELLKHVRGPDFPTGGEVVVGPELLQVYETGRGSV 330

Query: 249  VIRGVSHIE-----------------KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            V+RG + IE                                     AA  + + E +   
Sbjct: 331  VVRGKATIERVGGGSGGGGGGDDGGGNDEVATAAGRTRRRRGAAAAAAAAQAVDEDIGGG 390

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
            R     +L   ++        +L    +  +   QL   + ++       V +     + 
Sbjct: 391  RGGSGRELVVITELPYQVYKSDLVASIAELIESKQLEGASDVRDESDRTGVRVVVEVKKG 450

Query: 352  FTLIGILKAFVAFREEVVVRRTKY--LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            ++   +L          V        LLN    +  +   L   +    +VV+  R S +
Sbjct: 451  YSGKVVLAQLYNSTRLQVNFHYNCTSLLNTKPLQMGLKDMLLAFLDFRCDVVQR-RSSAS 509

Query: 410  PETARRELM----------QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
               A++ L           +     + + D+    D  +          LSE Q  AIL 
Sbjct: 510  LRAAQQRLHLVEGFLRLLREEGRLDAVVADVRAAEDGGAARRALVAKHGLSEEQAEAILG 569

Query: 460  LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
            L L RLTGL    +  E   L   I    DIL++R+ LL +++QE  ++      PRRT 
Sbjct: 570  LTLRRLTGLEAAKLDQERRELQQSIARLGDILANRTTLLAVVEQEAEALAAAFPEPRRTA 629

Query: 520  I---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            +    +       E  +  +  +V  S  G+++R+      AQ R  +G+SG+ +R  D 
Sbjct: 630  LVAAEDVPATPSLESLVPPKPCLVLASRRGFLRRLAGDSLTAQNRNTRGKSGIRLRSGDQ 689

Query: 577  VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
            +  L   S    ++  +  G ++K +   +P  S  A   +     +    E +  +   
Sbjct: 690  LASLVAGSDRDLLMVVTPDGRMFKTRTAAVPPSSSSASSASPTAAAASGGTESVGRMKEV 749

Query: 637  PEDESSWN---------------NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS- 680
             +  S                     +V  T+ G ++R  L +  + ++ G + M L+S 
Sbjct: 750  EDAGSEAKEEEEVEGEDVGGAVAGPCLVLCTRGGRIKRLALKN-RRESKKGIMVMGLESS 808

Query: 681  -------------------------------RDEILSVET-CTQENDILLTTKLGQCVRF 708
                                            +E+       +  + +++ +  GQ + F
Sbjct: 809  SSKATGDGRDSSSSSSARDAASKKKGPDEAGEEELCWAALSRSPGDVVVVASAEGQVLLF 868

Query: 709  PISAIRVFAGRNSVGVRGISL---AKGDQVISMAIVLHA--------------------- 744
            P + +RV +G  S G   + +      D++  + ++                        
Sbjct: 869  PATDVRV-SGPQSAGTHAMRMSKRRPNDRIADITVLPAELAPLLGSQLPTTASASAGTAT 927

Query: 745  --DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                  ++          +     G+     ++  +   E    EE           +L 
Sbjct: 928  AASERGEDVAEDGDDDGEEEEEEGGEQGLTAAIDEEQEGEQEEGEEETSSRGPAGPCLLL 987

Query: 803  VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI------------------------ 838
            V+  G GKR      R+  R   G+ A  V+                             
Sbjct: 988  VTAHGIGKRIPLGQLRLGMRRQAGMVAIRVASAERARQRSRRSSSGGTAAQWQQQEQQQQ 1047

Query: 839  -----GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                   +VAV  V D +++I+ S  G ++R  V+ I +  R T+G  +      + VV 
Sbjct: 1048 GAAGPDHVVAVLVVRDGEEVIMASRNGVVVRQSVDGIAVQGRMTRGTFVMQLDGGDEVVD 1107

Query: 894  V 894
            V
Sbjct: 1108 V 1108


>gi|160905586|gb|ABX52351.1| gyrase subunit alpha [Bacillus sonorensis]
          Length = 309

 Score =  490 bits (1261), Expect = e-136,   Method: Composition-based stats.
 Identities = 193/309 (62%), Positives = 248/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  AMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGEVVDG +AV  NPDI L  
Sbjct: 121 NYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVVDGVLAVSKNPDISLAE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VTEIPYQV
Sbjct: 181 LMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVTEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148448|dbj|BAK20073.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148450|dbj|BAK20074.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148462|dbj|BAK20080.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148468|dbj|BAK20083.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 308

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 187/308 (60%), Positives = 249/308 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSLFSVN 340
           LQ+ F +N
Sbjct: 301 LQTSFGIN 308


>gi|50379830|gb|AAT76293.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/320 (57%), Positives = 247/320 (77%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILALIDNKDIEILELMNYIKGPDFPTGAIIDGRVGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSL 333
           +K+G   +++LN+LY+YT L
Sbjct: 302 VKKGEEPELVLNKLYKYTDL 321


>gi|160905556|gb|ABX52336.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905654|gb|ABX52385.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 190/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIEL+R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIELRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|284049783|emb|CBJ15409.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  488 bits (1257), Expect = e-135,   Method: Composition-based stats.
 Identities = 186/310 (60%), Positives = 247/310 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVA 343
           Q+ F +N++A
Sbjct: 301 QTSFGINLLA 310


>gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 739

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/696 (30%), Positives = 358/696 (51%), Gaps = 61/696 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  
Sbjct: 11  QSVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQ++S R   I+GQGN+GS+D DP   AA RYTE RL 
Sbjct: 71  GDVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLS 129

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ 
Sbjct: 130 KYAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNIT 189

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSH 255
           EV++ C+ ++ NP   ++ ++EII  PD+P G  +I  +  I   Y +G GSI  + V  
Sbjct: 190 EVINACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIE 313
            +        +++T +P+QV+ A+++E+IA  +++++I  I +++DESD +     V+  
Sbjct: 250 YDNHGN----VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYS 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
                +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R   + RR
Sbjct: 306 ASTKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L GL IA  N+DEV+ IIR   +P                      
Sbjct: 366 LQTSLDKVLDRLHILEGLLIAFLNIDEVIEIIRNFDDP---------------------- 403

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                  ++       LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 404 -------SLELQSRFALSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKEKELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+EL  +  +    RR++IV+       E  D +  E + V +S  G+V  
Sbjct: 457 SEVKFKNLMKKELKQILADFGDSRRSKIVQADKAQALEEKDLMPSERVTVILSKAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  +       G+  + ED        +++  ++FF+ LG  Y   V + P   
Sbjct: 515 ------RCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKLIFFTKLGKAYSMYVDKFPSA- 567

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ +   + L++ + I        + ++    +++ +T  G        D I    
Sbjct: 568 -RGYGEHITTYIPLDKEDEI-----INIEFANVAEHFLIASTS-GKGFVIPAEDLIANKV 620

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +GK    +   D++       ++  +L  +  G+ +
Sbjct: 621 TGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI 653


>gi|268610225|ref|ZP_06143952.1| DNA gyrase/topoisomerase IV, subunit A [Ruminococcus flavefaciens
           FD-1]
          Length = 747

 Score =  488 bits (1255), Expect = e-135,   Method: Composition-based stats.
 Identities = 219/773 (28%), Positives = 373/773 (48%), Gaps = 53/773 (6%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV-EWNK 69
           E    + S  I D ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M + G+   +K
Sbjct: 21  EGSGSVVSEKIADTLKKNYMPYAMSVIISRALPEI-DGFKPSHRKLLYMMYKRGLLSPDK 79

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV--DGDPPA 126
           +  K A + GE M K +PHG+ AIY+ L RM + + +L    I+ +GNFG         A
Sbjct: 80  ERSKSANVVGETM-KLNPHGDQAIYETLVRMTRGNEALLHPYIDSKGNFGKQYSSKMHFA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L+K  + L  D+ K+TVDF PNYD + QEP +L A +P VLVN   GIAV M
Sbjct: 139 APRYTEVKLEKICNELFRDIDKETVDFVPNYDNTMQEPTLLPASFPTVLVNSNTGIAVSM 198

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGR 245
           A+N+   NL EV +  +A++ +P+     ++  ++GPDFP G  +      +   Y TGR
Sbjct: 199 ASNVCPFNLEEVCETTIALMKDPNH---DILSTLKGPDFPGGGFMLYDEAELNKVYETGR 255

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GSI +R     +K +     + +TEIPY     A+++KI ELV+  +I +++ +RDE+D 
Sbjct: 256 GSIKVRSKYSYDKAA---NCLEITEIPYTTTVEAIIDKIIELVKAGKIREVSYIRDETDI 312

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G ++ I+LKR    D ++ +LYR T LQ  +  N   L    P+   +  IL  + AFR
Sbjct: 313 DGLKIAIDLKRNTDPDKLMQKLYRLTPLQDSYPCNFNILIAGTPKVMGVREILTEWTAFR 372

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           EE + RRT + L K +++ H+L  L+  + ++D+ +RIIR + N       LM       
Sbjct: 373 EECIQRRTYHDLTKKKEKLHLLEALSKILLDIDKAIRIIRETENEADVVPNLM------- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  + E+Q   + E++L  +          E++ L  +I+
Sbjct: 426 -------------------IGFGIDEIQAEFVAEIKLRNINKQYILRRVEEVDQLKKDIE 466

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVS 543
           E  DIL  + ++  II  EL  V      PR+T       + + E+ D      + + VS
Sbjct: 467 EMEDILRDKKKIRKIIINELRDVIKNYAKPRKTMFYYQSDIEEEEEIDDTPDYPVNLFVS 526

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++     R             +++ D+++  F  +  T ++FFS     YK K 
Sbjct: 527 KSGYFKKITPQSLRMSSEH-------KLKEGDYISQSFEATNKTDLIFFSDKAQAYKSKA 579

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                      G  +   LS ++ E + T++P  +      + Y+VF  ++G   +  + 
Sbjct: 580 SAFDDTKASVMGDYVPAKLSFDENENLVTMLPTTDY-----SGYIVFFFENGKAAKVPVK 634

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+A     +  +++     ++ DILL +  G  + F    I   + R+S G
Sbjct: 635 SYETKTNRKKLAKAYSEKSPLIAALFVGEDCDILLRSSSGHALVFNTGMILPKSTRDSQG 694

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           V+ ++L K   + S  I+   + +  E+       +A +           + +
Sbjct: 695 VQVMTLRKKALLASAVIITDEEREALEKYRSKAVPAAGKPAKELGDTNQLTFE 747



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 58/179 (32%), Gaps = 9/179 (5%)

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L +GD +  S       D  +           A     +  +     +    S + N +
Sbjct: 546 KLKEGDYISQSFEATNKTDLIFFSDKAQAYKSKASAFDDTKASVMGDYVPAKLSFDENEN 605

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVAVF 845
                       +I+   E G   +     +   +NR      A   S+ +    L+A  
Sbjct: 606 LVTMLPTTDYSGYIVFFFENGKAAKVPVKSYETKTNRKKL---AKAYSEKS---PLIAAL 659

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            V ++  I+L S  G  +      I   ++R ++GV + +  K   + S   I + E  
Sbjct: 660 FVGEDCDILLRSSSGHALVFNTGMILPKSTRDSQGVQVMTLRKKALLASAVIITDEERE 718


>gi|50379887|gb|AAT76296.1| DNA gyrase subunit A [Fusobacterium canifelinum]
          Length = 321

 Score =  487 bits (1254), Expect = e-135,   Method: Composition-based stats.
 Identities = 184/320 (57%), Positives = 247/320 (77%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             + +  I +E++ SYL Y+++VI+ RA+PD+RDGLKPVHRRILF M +MG+  +K + K
Sbjct: 2   SNVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI GEV+GKYHPHG+ A+Y  + RMAQD++ R LL+EG GNFGS+DGD  AA RYTE 
Sbjct: 62  SARIVGEVLGKYHPHGDLAVYRTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEA 121

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K    LL+D+ KDT+D+R N+D S  EP VL A+ PN+L+NG  GIAVGMATNIP H
Sbjct: 122 RMEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPH 181

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE+VDG +A+IDN DI++  LM  I+GPDFPTGA+I GR GI  AY TGRG I +RG 
Sbjct: 182 NLGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAIIDGRAGIIEAYKTGRGKIKVRGK 241

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             IE+    +  I+V+EIPYQ+NKA ++EKIA LV+EK+I +I+DLRDES+R+G R++IE
Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301

Query: 314 LKRGASADVILNQLYRYTSL 333
           +K+G   +++LN+LY+YT L
Sbjct: 302 VKKGEEPELVLNKLYKYTDL 321


>gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 801

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 228/737 (30%), Positives = 361/737 (48%), Gaps = 77/737 (10%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++V+ GRAIP L DG KPV RRIL+ M  MG++ + ++VK AR+ GEV+GK+HPHG+ ++
Sbjct: 81  MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDA+ RMAQ ++LR  +++GQGNFGS+DGD  AA RYTE  L   +  LL ++ + TVDF
Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           R NYDG+ +EPV L AR P +L+NG  GIAVGMAT IP HNL E+   C  ++  PD+  
Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260

Query: 214 DALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           D +++ I GPDFP G  I+   G I+ AY +GRGSI +R    +EK +    +I V ++P
Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320

Query: 273 YQVNKAAMLEKIAEL--------------------VREKRIVDIADLRDESDR-QGYRVV 311
             V+ A +L +I  L                     +   +  +  +RDES +    R+V
Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380

Query: 312 IELK-RGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVV 369
           IE + R      ++  L   TSL+S  SVN+  L+   K     L  IL+ +V +R   V
Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAPCMPLTRILRQWVRYRVTTV 440

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RR+++ L+KA  R H+L G    + ++D V+R+IR S +P+                  
Sbjct: 441 RRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKA----------------- 483

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                              LSE+Q   ILE+RL +L  L   ++  EL            
Sbjct: 484 ------------DLMTHFDLSEIQAEDILEIRLRQLARLAGIELERELADKQETAAYLSA 531

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRT-----RIVEGLLDMEDEDCIVREDMVVTVSH 544
           +L   SRL  +I +E+ +   +    RRT       +           I  E + V VS 
Sbjct: 532 LLQDESRLRALIAEEIQADAKKFGDDRRTLLEADTAITNKSIQTIAAAITDEPVTVIVSQ 591

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
            G++        R +   G   + +  ++ D +   F V +  +++     G  Y   V 
Sbjct: 592 KGWL--------RTRSGHGLDTATLGFKEGDALLQAFEVRSVDTLVLLDHSGRAYSIAVA 643

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
           ++P G     G  + + +    G  + ++        + ++L++V  T  G      L +
Sbjct: 644 QIPGGRGD--GIPVSSQVDFQPGGVLASVA-----CGAGDSLWLVAGT-GGYGFLTTLEN 695

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               NR+GK  + LD ++  L +   T    + L  +  G+ + FP+  ++        G
Sbjct: 696 MTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSSDGRGLLFPLVDVKNLP--KGKG 753

Query: 724 VRGISLAKGDQVISMAI 740
           V+ I+L     + S+++
Sbjct: 754 VKLIALGASATLQSLSV 770


>gi|603238|gb|AAA57342.1| DNA gyrase A subunit [Mycoplasma gallisepticum]
 gi|1583653|prf||2121321B DNA gyrase:SUBUNIT=A
          Length = 383

 Score =  487 bits (1253), Expect = e-135,   Method: Composition-based stats.
 Identities = 185/366 (50%), Positives = 259/366 (70%), Gaps = 1/366 (0%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   SIT E++ S++ YA++VI+ RA+P+ RDGLKPV   +L+G    G+  +K Y K A
Sbjct: 18  VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVT-WVLYGAYTSGLTHDKPYRKSA 76

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +I G VMGKYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD   A RYTE RL
Sbjct: 77  QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAGAMRYTEARL 136

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            K +  +L ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVGMATNIP HNL
Sbjct: 137 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 196

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++ G   ++ N +  ++ L E I+GPDFPT A ILG TGI   + TGRGS+ +R  S 
Sbjct: 197 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEILGETGINEYFNTGRGSVSVRAKSE 256

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           IE+ + ++  IV+T+IPY VNKA ++ KIAELV+ ++I  IADLRDES+R+G R+VIE K
Sbjct: 257 IEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIETK 316

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R    +V+LNQLY+ T LQ+ FSV M+AL   +P+   L   L+ ++  + ++++R+T +
Sbjct: 317 RDVIPEVLLNQLYKSTQLQTNFSVAMLALVNNQPKVLNLKEALQIYIDHQFDILLRKTNF 376

Query: 376 LLNKAR 381
            L KA+
Sbjct: 377 ELKKAK 382


>gi|160905606|gb|ABX52361.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905668|gb|ABX52392.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148454|dbj|BAK20076.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148464|dbj|BAK20081.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148466|dbj|BAK20082.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 307

 Score =  486 bits (1252), Expect = e-135,   Method: Composition-based stats.
 Identities = 186/307 (60%), Positives = 248/307 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSLFSVN 340
           Q+ F +N
Sbjct: 301 QTSFGIN 307


>gi|329725098|gb|EGG61592.1| DNA gyrase/topoisomerase IV, A subunit [Staphylococcus epidermidis
           VCU144]
          Length = 405

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/399 (46%), Positives = 278/399 (69%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G  ++K + K A
Sbjct: 5   IQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNFRKSA 64

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 65  KTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 124

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            + +  LL D+ K+TV F PNYD +  EP+VL AR+PN+L+NG  GI+ G AT+IP HNL
Sbjct: 125 SQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIPPHNL 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            EV+ G +  ID PDI ++ LM+ I+GPDFPTG +I G  GIK AY TG+G +V+R    
Sbjct: 185 AEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGKVVVRSRVD 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
            E     R+Q++VTEIPY+VNK+++++KI EL  +K++  I ++RDE+DR G R+ IELK
Sbjct: 245 EEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLRIAIELK 304

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+++ I N LY+ + LQ  ++ NMVA++  +P+   L  I+++++  + EVV  RT+Y
Sbjct: 305 KDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTNRTRY 364

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
            L +A  R H++ GL  A++ LDEV+ +IR S N +  +
Sbjct: 365 DLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKMLK 403


>gi|160905544|gb|ABX52330.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905546|gb|ABX52331.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905548|gb|ABX52332.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905550|gb|ABX52333.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905554|gb|ABX52335.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905562|gb|ABX52339.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905564|gb|ABX52340.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905568|gb|ABX52342.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905592|gb|ABX52354.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905594|gb|ABX52355.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905596|gb|ABX52356.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905598|gb|ABX52357.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905600|gb|ABX52358.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905602|gb|ABX52359.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905604|gb|ABX52360.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905620|gb|ABX52368.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905622|gb|ABX52369.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905624|gb|ABX52370.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905636|gb|ABX52376.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905638|gb|ABX52377.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905640|gb|ABX52378.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905642|gb|ABX52379.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905646|gb|ABX52381.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905648|gb|ABX52382.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905650|gb|ABX52383.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905656|gb|ABX52386.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905658|gb|ABX52387.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905660|gb|ABX52388.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905670|gb|ABX52393.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905676|gb|ABX52396.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905678|gb|ABX52397.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905680|gb|ABX52398.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 188/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905644|gb|ABX52380.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905662|gb|ABX52389.1| gyrase subunit alpha [Bacillus subtilis]
          Length = 309

 Score =  486 bits (1251), Expect = e-135,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV DNPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSDNPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905552|gb|ABX52334.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905608|gb|ABX52362.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905616|gb|ABX52366.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905618|gb|ABX52367.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905626|gb|ABX52371.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905628|gb|ABX52372.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 739

 Score =  486 bits (1250), Expect = e-135,   Method: Composition-based stats.
 Identities = 215/696 (30%), Positives = 358/696 (51%), Gaps = 61/696 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            S+ +  + +YL Y++ VIL RA+P + DGLKPV RRI++ M ++G+    KY K AR  
Sbjct: 11  QSVGEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTV 70

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           G+V+GKYHPHG++A Y+A+  MAQ++S R   I+GQGN+GS+D DP   AA RYTE RL 
Sbjct: 71  GDVLGKYHPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSID-DPKSFAAMRYTESRLS 129

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  LLD+L K TVD+  N+DG+  EP +L A+ PN+L+NG  GIAVGM+T IP HN+ 
Sbjct: 130 KYAVLLLDELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNIT 189

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIVIRGVSH 255
           EV++ C+ ++ NP   ++ ++EII  PD+P G  +I  +  I   Y +G GSI  + V  
Sbjct: 190 EVINACLHLLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYE 249

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR--VVIE 313
            +        +++T +P+QV+ A+++E+IA  +++++I  I +++DESD +     V+  
Sbjct: 250 YDNHGN----VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYS 305

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRR 372
                +   I+  L   T L+  F VNM  +    +P+   L+ IL  ++ +R   + RR
Sbjct: 306 ASTKKNIQKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRR 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +  L+K  DR H+L G+ IA  N+DEV+ IIR   +P                      
Sbjct: 366 LQTSLDKVLDRLHILEGMLIAFLNIDEVIDIIRNYDDP---------------------- 403

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                  ++       LSE+Q  AIL +RL +L  +   +I+ E   L  E +     L+
Sbjct: 404 -------SLELQSRFALSEIQAEAILNIRLRKLAKIEEIEIKKEQKELQKEKELLEGYLN 456

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKR 550
           S  +   ++K+EL  +  +    RR++IVE       E  D +  E + V +S  G+V  
Sbjct: 457 SEVKFKNLMKKELKQILADFGDSRRSKIVEADKAQALEEKDLMPSERVTVILSKAGWV-- 514

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                 R  +       G+  + ED        +++  ++FF+ LG  Y   V + P   
Sbjct: 515 ------RCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKLIFFTKLGKAYSMYVDKFPSA- 567

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            +  G+ +   + L++ + I        + ++    +++ +T  G        D I    
Sbjct: 568 -RGYGEHITTYIPLDKEDEI-----INIEFANVAEHFLIASTS-GKGFVIPAEDLIANKV 620

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           +GK    +   D++       ++  +L  +  G+ +
Sbjct: 621 TGK---NIFDADDVFKFIPYDKDLKMLAVSSQGRAI 653


>gi|160905572|gb|ABX52344.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905578|gb|ABX52347.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905584|gb|ABX52350.1| gyrase subunit alpha [Bacillus subtilis]
 gi|160905634|gb|ABX52375.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  486 bits (1250), Expect = e-134,   Method: Composition-based stats.
 Identities = 188/309 (60%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|309806046|ref|ZP_07700069.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167565|gb|EFO69721.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 487

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 208/508 (40%), Positives = 308/508 (60%), Gaps = 26/508 (5%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKTQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKDVDSENILNYLFKSTDLQISYNFNMVAIDNMAPVQLGLKRILSSYLEHKKS 361

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV++RT + L K++ R  ++ GL  A+  LD+V++ IR S + + A+  LM         
Sbjct: 362 VVLKRTHFDLVKSKQRLEIVEGLIYALNILDQVIKTIRASKDKKDAKVNLM--------- 412

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                 +E Q  AI+ L+L RLT    + + +E   L   I + 
Sbjct: 413 -----------------NNYSFTEKQAEAIVSLQLYRLTNTDVNQLLSEKKQLEANILDY 455

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP 515
           LDI+++++RL  +I +E   VK  LD  
Sbjct: 456 LDIINNKNRLEAVIVKEFEDVKKSLDQH 483


>gi|255030550|ref|ZP_05302501.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 323

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 185/321 (57%), Positives = 242/321 (75%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +RG   IE+    +E IV+TEIPYQVNKA ++E+IAEL REK+I  I  L DESDR G R
Sbjct: 243 VRGRVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMR 302

Query: 310 VVIELKRGASADVILNQLYRY 330
           +VIE++R  SA VI+N   + 
Sbjct: 303 IVIEVRRDISASVIVNNFIQK 323


>gi|160905588|gb|ABX52352.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905590|gb|ABX52353.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|160905664|gb|ABX52390.1| gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 309

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905558|gb|ABX52337.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905574|gb|ABX52345.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905576|gb|ABX52346.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
 gi|160905580|gb|ABX52348.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905582|gb|ABX52349.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905630|gb|ABX52373.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|160905632|gb|ABX52374.1| gyrase subunit alpha [Bacillus subtilis subsp. inaquosorum]
 gi|293627261|gb|ADE58305.1| DNA gyrase alpha subunit [Bacillus subtilis subsp. inaquosorum]
          Length = 309

 Score =  485 bits (1248), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|13810775|gb|AAK40032.1|AF272022_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVN 340
           + F +N
Sbjct: 301 TSFGIN 306


>gi|56159870|gb|AAV80746.1| gyrase subunit A [Bacillus sp. NRRL B-23956]
          Length = 312

 Score =  485 bits (1247), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/311 (60%), Positives = 247/311 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVALNG 346
            F +NM+AL  
Sbjct: 301 SFGINMLALVD 311


>gi|284049789|emb|CBJ16553.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTARQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148446|dbj|BAK20072.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148452|dbj|BAK20075.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148456|dbj|BAK20077.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148458|dbj|BAK20078.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148460|dbj|BAK20079.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148470|dbj|BAK20084.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148472|dbj|BAK20085.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148474|dbj|BAK20086.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148476|dbj|BAK20087.1| DNA gyrase subunit alpha [Bacillus subtilis]
 gi|332148478|dbj|BAK20088.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 306

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SLFSVN 340
           + F +N
Sbjct: 301 TSFGIN 306


>gi|332148498|dbj|BAK20098.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 304

 Score =  484 bits (1246), Expect = e-134,   Method: Composition-based stats.
 Identities = 185/304 (60%), Positives = 246/304 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI 
Sbjct: 121 YQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 IPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+
Sbjct: 241 YQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTA 300

Query: 333 LQSL 336
           LQ+ 
Sbjct: 301 LQTS 304


>gi|284049787|emb|CBJ16552.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 314

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/313 (59%), Positives = 247/313 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYKPE 350
            +N++AL   +P+
Sbjct: 301 GINLLALVDGQPK 313


>gi|160905614|gb|ABX52365.1| gyrase subunit alpha [Bacillus tequilensis]
          Length = 309

 Score =  484 bits (1245), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV ++PDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESPDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|284803677|emb|CBJ21244.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 245/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F + ++AL
Sbjct: 301 SFGIKLLAL 309


>gi|160905610|gb|ABX52363.1| gyrase subunit alpha [Bacillus mojavensis]
 gi|160905652|gb|ABX52384.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|284803675|emb|CBJ21243.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 310

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 185/310 (59%), Positives = 246/310 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EP V+ +R+ N+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGSEREPAVMPSRFLNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 QELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+L
Sbjct: 241 QVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTAL 300

Query: 334 QSLFSVNMVA 343
           Q+ F +N++A
Sbjct: 301 QTSFGINLLA 310


>gi|129921061|gb|ABO31934.1| GyrA [Bacillus amyloliquefaciens]
          Length = 309

 Score =  483 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 245/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++ KIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIGKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|145642256|ref|ZP_01797822.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273061|gb|EDK12941.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 316

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 183/317 (57%), Positives = 240/317 (75%), Gaps = 7/317 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRG + +R  + +E     REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ 
Sbjct: 234 YRTGRGKVYVRARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNIT 293

Query: 301 DESDRQGYRVVIELKRG 317
           D S+++G R+ I++KR 
Sbjct: 294 DLSNKEGIRIEIDIKRD 310


>gi|13810767|gb|AAK40028.1|AF272018_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 305

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 190/305 (62%), Positives = 245/305 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NPDI L  LMEI
Sbjct: 121 SEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEI 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++TEIPYQVNKA 
Sbjct: 181 IPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|160905566|gb|ABX52341.1| gyrase subunit alpha [Bacillus vallismortis]
          Length = 309

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 250/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGL+PVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLQPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQD 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|330953528|gb|EGH53788.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 285

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 176/283 (62%), Positives = 219/283 (77%), Gaps = 2/283 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEKTSG--DREQIVVTEIPYQVNKAAMLEKIAELVREK 291
           R  S +E       R+QIV+TE+PYQ+NKA ++EKIAELV+EK
Sbjct: 243 RARSIVEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEK 285


>gi|332148486|dbj|BAK20092.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 304

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 184/304 (60%), Positives = 243/304 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D
Sbjct: 61  VYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTID 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           ++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I 
Sbjct: 121 YQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEIT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 181 NQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 240

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 241 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 300

Query: 333 LQSL 336
           LQ+ 
Sbjct: 301 LQTS 304


>gi|160905666|gb|ABX52391.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|47079978|gb|AAT10175.1| gyrase A [Bacillus mojavensis]
          Length = 309

 Score =  483 bits (1242), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 248/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 SFGINMLAL 309


>gi|160905560|gb|ABX52338.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 309

 Score =  482 bits (1241), Expect = e-134,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 247/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +NM+AL
Sbjct: 301 YFGINMLAL 309


>gi|62946516|gb|AAY22401.1| GyrA [Bacillus subtilis]
          Length = 311

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/311 (59%), Positives = 249/311 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYK 348
            +N++AL   +
Sbjct: 301 GINLLALVDGQ 311


>gi|40786593|gb|AAR89868.1| putative DNA gyrase/topoisomerase A subunit [Oryza sativa Japonica
           Group]
          Length = 418

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/337 (54%), Positives = 243/337 (72%), Gaps = 7/337 (2%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           ++ +  V +  E   +Y+ YA++V+LGRA+PD+RDGLKPVHRRIL+ M +MG+   + + 
Sbjct: 79  KERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFR 138

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           KCAR+ GEV+GK+HPHG++A+Y+ L RMAQD+S+R  L++G GNFGS+D DPPAA RYTE
Sbjct: 139 KCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTE 198

Query: 133 CRLQKAAHFLLDDLGK----DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           CRL     F   D+        VDF PN+D S +EP +L AR P++L+NG  GIAVGMAT
Sbjct: 199 CRLD-VGCFFFLDIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMAT 257

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGE+VD    +I+NP+  L  L+E + GPDFPTG  I+G  GI  AY TGRG +
Sbjct: 258 NIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIVGNQGILEAYKTGRGRV 317

Query: 249 VIRGVSHIE--KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           V+RG + IE       R  I++ E+PYQ NK+ ++E+IAELV EK +  I+D+RDESDR 
Sbjct: 318 VMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRS 377

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           G RVVIELKRGA   ++LN LYR+T+LQS FS NMVA
Sbjct: 378 GMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVA 414


>gi|160905570|gb|ABX52343.1| gyrase subunit alpha [Bacillus subtilis subsp. spizizenii]
          Length = 309

 Score =  482 bits (1241), Expect = e-133,   Method: Composition-based stats.
 Identities = 189/309 (61%), Positives = 249/309 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITISE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + I++TS  +E+IVVTEIPYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVTEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 NKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|332148494|dbj|BAK20096.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 303

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/303 (60%), Positives = 245/303 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +
Sbjct: 121 QDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITI 180

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PY
Sbjct: 181 PELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPY 240

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
           QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+L
Sbjct: 241 QVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAL 300

Query: 334 QSL 336
           Q+ 
Sbjct: 301 QTS 303


>gi|28916600|gb|AAO59533.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +L RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SLVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|160905672|gb|ABX52394.1| gyrase subunit alpha [Bacillus atrophaeus]
          Length = 309

 Score =  481 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 187/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|327335378|gb|AEA49884.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 307

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/307 (60%), Positives = 248/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +N++AL
Sbjct: 301 GINLLAL 307


>gi|56112326|gb|AAV71141.1| GyrA [Bacillus amyloliquefaciens]
          Length = 311

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/311 (59%), Positives = 246/311 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            II GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 GIIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALNGYK 348
            +N++AL   +
Sbjct: 301 GINLLALVDGQ 311


>gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A]
 gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A]
          Length = 739

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 218/724 (30%), Positives = 355/724 (49%), Gaps = 61/724 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+    + +YL YA+ VIL RA+P L DGLKPV RR+++ M ++G+    KY K AR  G
Sbjct: 8   SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V+GKYHPHG++A Y+A+  MAQ++S R  LI+GQGN+GS D DP   AA RYTE +L  
Sbjct: 68  DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSAD-DPKSFAAMRYTESKLTA 126

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            AH LL +L  +TVD+  N+DG+ QEP  L AR PN+L+NGG GIAVGM+T+IP HN+GE
Sbjct: 127 YAHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGE 186

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHI 256
           +V  C A++ NP +  +AL++I+  PDFPTG V++  R  I + Y TG GS+ +R   HI
Sbjct: 187 IVAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHI 246

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           EK +     IV+ E+PYQV+ + + E+I + ++EK+++ +  +RDESD +    ++ L R
Sbjct: 247 EKDN-----IVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPR 301

Query: 317 GASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRT 373
               D   ++  L+  T L+    + +  +    KP+   LI IL+ ++ +RE+ V+RR 
Sbjct: 302 SHRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRL 361

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            Y L+   +R  +L GL IA   LD V++IIR   + +TA                    
Sbjct: 362 SYRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTA-------------------- 401

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                        + L+  Q+ AIL +RL +L  L  + I  E  +L  E K   +++ +
Sbjct: 402 ---------LMQALPLTAAQSEAILNIRLRQLAKLEENAIVQEEKTLIDEQKSLQNLIDN 452

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYVKRV 551
           R   L  I  EL +       PRRT  ++               E + + +S + +V   
Sbjct: 453 RDARLQFIADELAADAQNYADPRRTTFIKPDAKTALPARAWQPSEAVTLVLSKMAWV--- 509

Query: 552 PLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
                R  +        +  +  D         +  + +   + G  Y   +  +     
Sbjct: 510 -----RLAKTHQVDGRTLAYKSGDEFLLQIAAKSDQTAILCGNDGRYYALSLANIASARG 564

Query: 612 QARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                       L++              +     Y V A  +      K SD +   + 
Sbjct: 565 YGE--------PLSRYFSFAEKTTIVAAAALDPEQYYVLAANNAYGFVVKGSDLVAKTKK 616

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
           GK  + +   + +  +    +E+ +      G+ + FP   +   +     G + +++ +
Sbjct: 617 GKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPARDLPQQS--KGKGNKIMAITQ 674

Query: 732 GDQV 735
            + +
Sbjct: 675 KEWI 678


>gi|28916592|gb|AAO59529.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 309

 Score =  481 bits (1238), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 246/309 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSVNMVAL 344
            F +N++AL
Sbjct: 301 SFGINLLAL 309


>gi|284049779|emb|CBJ15407.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 308

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 185/308 (60%), Positives = 245/308 (79%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LM
Sbjct: 121 DGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVALN 345
            +N++AL 
Sbjct: 301 GINLLALV 308


>gi|160905674|gb|ABX52395.1| gyrase subunit alpha [Bacillus pumilus]
          Length = 306

 Score =  481 bits (1237), Expect = e-133,   Method: Composition-based stats.
 Identities = 183/305 (60%), Positives = 241/305 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K + K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE RL K +  +L D+ KDT+D++ 
Sbjct: 61  AMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEARLSKISMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NP++    
Sbjct: 121 NYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQLGEVIDGVLAISQNPEMTTQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LM+II GPDFPT   I+GR+GI+ AY TGRGSI +R  S IE+TS  +++IV+ EIPYQV
Sbjct: 181 LMDIIPGPDFPTAGQIIGRSGIRKAYETGRGSITLRAKSDIEETSSGKQRIVINEIPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIEL+R A+  V+LN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIELRRDATVHVLLNHLYKQTTLQT 300

Query: 336 LFSVN 340
            F +N
Sbjct: 301 SFGIN 305


>gi|302552702|ref|ZP_07305044.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302470320|gb|EFL33413.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 685

 Score =  480 bits (1235), Expect = e-133,   Method: Composition-based stats.
 Identities = 261/737 (35%), Positives = 394/737 (53%), Gaps = 98/737 (13%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAY 241
            ATNIP HNL EV  G    ++NP+   + L++     I+GPDFPTGA+++GR GI+ AY
Sbjct: 11  WATNIPPHNLREVASGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAY 70

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TGRGSI +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RD
Sbjct: 71  RTGRGSITMRAVIEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRD 129

Query: 302 E-SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           E S R G R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ 
Sbjct: 130 ETSSRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRH 189

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM  
Sbjct: 190 WVTHQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARHGLM-- 247

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                     + + E+Q  AILE++L RL  L R  I  E + L
Sbjct: 248 ------------------------DLLEIDEIQANAILEMQLRRLAALERQKIVQEHDEL 283

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E  +IL+S  R  GI+ +EL ++ ++    R+T+++    DM  ED I  ED+VV
Sbjct: 284 QAKISEYNEILASPVRQRGIVSEELAAIVEKYGDDRQTKLIPYEGDMSIEDLIAEEDIVV 343

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
           TV+  GY+KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+
Sbjct: 344 TVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYR 403

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            K + LP     ARG+ + N+L+    E I  I+   + E+     Y+V ATK G V++ 
Sbjct: 404 VKGYELPDAGRDARGQHVANLLAFQPDEAIAEILAIRDYEAV---PYLVLATKAGLVKKT 460

Query: 661 KLSDFIQINRSGKIAMKLD-----SRDEILSVETCTQENDILLTTKLGQCVRFPISA--I 713
            L D+      G IA+ L      S DE++  E  + ++D+LL +K  Q +RF  S   +
Sbjct: 461 PLKDYDSPRSGGVIAINLRSMEDGSDDELIGAELVSSDDDLLLISKKAQSIRFTASDETL 520

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GR + GV+G+S  +GD+++SM +V                                
Sbjct: 521 RPM-GRATSGVKGMSFREGDELLSMNVVRPGT---------------------------- 551

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                    F+ T ++ G+ KRT+  ++R+  R G GI+A  + 
Sbjct: 552 -------------------------FVFTATDGGYAKRTNVDEYRVQGRGGLGIKAAKIV 586

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
           +  + G+LV    V + D+I+ ++  G +IR  VNEIR   R T GV + +  K + VV 
Sbjct: 587 E--DRGSLVGALVVEETDEILAITLSGGVIRTRVNEIRETGRDTMGVQLINLGKRDAVVG 644

Query: 894 VERIRESEIVDEAESTE 910
           + R  E+    E    +
Sbjct: 645 IARNAEAGREAEEVDGD 661



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/248 (18%), Positives = 96/248 (38%), Gaps = 14/248 (5%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS---THTSVLFFS 593
             +V  +  G VK+ PL  Y + R GG     +   ++    +L       +   +L  S
Sbjct: 446 PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRSMEDGSDDELIGAELVSSDDDLLLIS 505

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                 +       +  P  R  + +  +S  +G+ + ++             +V  AT 
Sbjct: 506 KKAQSIRFTASDETL-RPMGRATSGVKGMSFREGDELLSMNVVR------PGTFVFTATD 558

Query: 654 HGNVRRNKLSDFIQINRSG--KIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPI 710
            G  +R  + ++    R G    A K+      ++      + ++IL  T  G  +R  +
Sbjct: 559 GGYAKRTNVDEYRVQGRGGLGIKAAKIVEDRGSLVGALVVEETDEILAITLSGGVIRTRV 618

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + IR   GR+++GV+ I+L K D V+ +A    A  + +E    +        + +  T+
Sbjct: 619 NEIRE-TGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGDIVVDETAEGVATTGTD 677

Query: 771 EITSLKND 778
           E  +   +
Sbjct: 678 EGEAPSAE 685


>gi|284803667|emb|CBJ21239.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 304

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/304 (60%), Positives = 241/304 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQT 300

Query: 336 LFSV 339
            F +
Sbjct: 301 SFGI 304


>gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
 gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa
           Ann-1]
          Length = 650

 Score =  480 bits (1234), Expect = e-133,   Method: Composition-based stats.
 Identities = 210/625 (33%), Positives = 319/625 (51%), Gaps = 57/625 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+           G   + + +  + +YL Y++ V+L RA+P + DGLKPV RRI++ M
Sbjct: 1   MTDLTRP----FFHGFEQMPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++ +    K  K  R  G+V+GKYHPHG+ A Y+AL  MAQ +S R  LIEGQGNFGS 
Sbjct: 57  HELRLNPKAKPKKSVRAVGDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSS 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE +L   +  LL +L + TV++  N+DG+ +EP  L +R P++L+NG
Sbjct: 117 D-DPKSFAAMRYTESKLTPISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGI 237
             GIAVGMAT++P HNL E+    + ++DNP+  + AL + IRGPD+PT A  I   + +
Sbjct: 176 TTGIAVGMATDVPPHNLNEIASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +N Y TG GS+  R   H E  +     +V+T +PYQV+ + ++E+IA+ +R K++  + 
Sbjct: 236 QNLYETGNGSVRTRATYHKEDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLD 290

Query: 298 --DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
              +RDESD +   R+V+  +      + ++  L+  T L+    VN+  +    +P+  
Sbjct: 291 GEGVRDESDHKNPVRIVLFPRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVK 350

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  +++FR + V RR KY L K   R H+L GL IA  NLD+V+ IIR    P+ 
Sbjct: 351 PLKQLLSEWLSFRSDTVTRRLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPK- 409

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                                               LS+ QT  IL+ +L +L  L    
Sbjct: 410 ----------------------------PVLIARFGLSDAQTEYILDTKLRQLARLEEMA 441

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDE 530
           IR+E ++L  E  E   IL S  +L  +IK ELL+        RR  +V       +++ 
Sbjct: 442 IRSEQDALTKERDEINVILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDES 501

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E M V +S  G++        RA +      SG+  R+ D +       +   V 
Sbjct: 502 ELVASEPMTVVLSEKGWI--------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVS 553

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARG 615
           F  S G  Y   V  LP        
Sbjct: 554 FLDSEGRAYSTLVHTLPAARGNGEP 578


>gi|332148484|dbj|BAK20091.1| DNA gyrase subunit alpha [Bacillus subtilis]
          Length = 302

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/302 (60%), Positives = 244/302 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIP 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQ 300

Query: 335 SL 336
           + 
Sbjct: 301 TS 302


>gi|56159834|gb|AAV80728.1| gyrase subunit A [Bacillus subtilis]
          Length = 317

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 184/309 (59%), Positives = 248/309 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMA
Sbjct: 8   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 67

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS 
Sbjct: 68  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 127

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LME+I 
Sbjct: 128 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIP 187

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++
Sbjct: 188 GPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLI 247

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N+
Sbjct: 248 EKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL 307

Query: 342 VALNGYKPE 350
           +AL   +P+
Sbjct: 308 LALVDGQPK 316


>gi|319826932|gb|ADV74760.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  479 bits (1233), Expect = e-133,   Method: Composition-based stats.
 Identities = 186/307 (60%), Positives = 247/307 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 300

Query: 340 NMVALNG 346
           N++AL  
Sbjct: 301 NLLALVD 307


>gi|319826934|gb|ADV74761.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/306 (60%), Positives = 247/306 (80%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+
Sbjct: 121 SEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEV 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAK 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGI 300

Query: 340 NMVALN 345
           N++AL 
Sbjct: 301 NLLALV 306


>gi|73916132|gb|AAZ92934.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 639

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 263/720 (36%), Positives = 405/720 (56%), Gaps = 88/720 (12%)

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           NLGE +D    V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  
Sbjct: 1   NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSR 60

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
           + IE T   RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE
Sbjct: 61  TEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIE 120

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           +KR ASA+VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT
Sbjct: 121 VKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRT 180

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           ++   KA  RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +             
Sbjct: 181 RFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------- 227

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL+ 
Sbjct: 228 -------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAK 274

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             R+  IIK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR+ 
Sbjct: 275 PERVSQIIKDELDEVKRKFSDKRRTELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLD 334

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              + AQ+RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     
Sbjct: 335 QDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRT 394

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           A+G  ++N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G
Sbjct: 395 AKGLPVVNLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNG 452

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             A+ L   DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +G
Sbjct: 453 LKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREG 511

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
           D V+  +                                                     
Sbjct: 512 DTVVGAS----------------------------------------------------- 518

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           L   +  +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  ++ 
Sbjct: 519 LITDQDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDED 576

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV---SVERIRESEIVDEAEST 909
           +++++D G +IR  +  I    RAT GV +    +D ++V   +V    + E+  E E+ 
Sbjct: 577 LMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENETE 636


>gi|332148480|dbj|BAK20089.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148490|dbj|BAK20094.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  479 bits (1232), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/302 (60%), Positives = 240/302 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 300

Query: 335 SL 336
           + 
Sbjct: 301 TS 302


>gi|332148482|dbj|BAK20090.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/302 (60%), Positives = 241/302 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D+  
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYHD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I +  
Sbjct: 121 NYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIPE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLR+ESDR G R+VIE++R A+A VILN LY+ T+LQ+
Sbjct: 241 NKARLIEKIADLVRDKKIEGIPDLREESDRNGMRIVIEIRRDANAHVILNHLYKQTALQT 300

Query: 336 LF 337
            F
Sbjct: 301 SF 302


>gi|332148488|dbj|BAK20093.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
 gi|332148496|dbj|BAK20097.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 302

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 183/302 (60%), Positives = 241/302 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ
Sbjct: 241 VNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQ 300

Query: 335 SL 336
           + 
Sbjct: 301 TS 302


>gi|28916618|gb|AAO59542.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 185/306 (60%), Positives = 246/306 (80%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+  +LQ+ F 
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQAALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|312275252|gb|ADQ57976.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 210/401 (52%), Positives = 276/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|13810777|gb|AAK40033.1|AF272023_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|13810779|gb|AAK40034.1|AF272024_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 309

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 186/309 (60%), Positives = 248/309 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 300

Query: 341 MVALNGYKP 349
           ++AL   +P
Sbjct: 301 LLALVDGQP 309


>gi|160905612|gb|ABX52364.1| gyrase subunit alpha [Bacillus mojavensis]
          Length = 307

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 187/307 (60%), Positives = 246/307 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 ELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 ARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSF 300

Query: 338 SVNMVAL 344
            +NM+AL
Sbjct: 301 GINMLAL 307


>gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 696

 Score =  477 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 227/667 (34%), Positives = 341/667 (51%), Gaps = 41/667 (6%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           MG YHPHG+AAIYDA+AR+AQD+++R  L++GQGNFG++DGD PAA RYTE R+   A  
Sbjct: 1   MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L+ L ++ VDFR NYDG+  EP VL A++PN+L NG  GIAVGMATNIP HN+ E+VD 
Sbjct: 61  MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           C+ +I  PD   D L++ + GPDFPTG +I      I NAY TG+G   +R     E   
Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK-RGAS 319
               QIV+TEIPYQV K+ ++EKIAEL++ K+I  + D+RDES     R++IE + +   
Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESA-DDIRLIIEPRSKNVD 239

Query: 320 ADVILNQLYRYTSLQSLFSVNMVA-LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +V++  LYR + L+  FS+NM   ++G  P+  ++  +L+AF+  R EV+ RR+ + + 
Sbjct: 240 PEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRME 299

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K   R  VL G  +A  NLD V+ IIR+  +P++A   LM   W    ++ + +      
Sbjct: 300 KIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSA---LMAEDWGKDHVRAMDEASYVPP 356

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                +    LSEVQ  AIL +RL  L  L   ++  E ++L  E     D+L +     
Sbjct: 357 APSTENA---LSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQW 413

Query: 499 GIIKQELLSVKDELDTP----------RRTRIVE--GLLDMEDEDCIVREDMVVTVSHLG 546
             I  +L   K +              RRT   E   + ++  E  I RE + V  S +G
Sbjct: 414 DTIIDQLRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPLEAMIDREPITVVCSQMG 473

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           ++        RA          +  +D D    +F   T   +L F S G  Y      L
Sbjct: 474 WI--------RAMTGHIDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTL 525

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
           P G  +  G+ L  ++ L    +I  I+             ++ A+  G+       D +
Sbjct: 526 PGG--RGMGEPLRLMVDLPNEVQIVDIL------IHKAGRKLLVASSAGDGFIVPEDDVL 577

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
              RSGK  + +    + +     T + D + +  +  + + F +  +    GR   GVR
Sbjct: 578 AQTRSGKQVLNVRGDAKAMICAPVTGDADAVAVVGENRKVLVFGLDELPEM-GRG-KGVR 635

Query: 726 GISLAKG 732
                 G
Sbjct: 636 LQKYKDG 642


>gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
 gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           K5030]
          Length = 461

 Score =  476 bits (1226), Expect = e-132,   Method: Composition-based stats.
 Identities = 193/493 (39%), Positives = 293/493 (59%), Gaps = 41/493 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T IP+QV+ + +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSR 494
            E ++   +L S 
Sbjct: 447 KEREKLEQLLGSE 459


>gi|302524595|ref|ZP_07276937.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
 gi|302433490|gb|EFL05306.1| DNA gyrase, A subunit [Streptomyces sp. AA4]
          Length = 832

 Score =  476 bits (1225), Expect = e-132,   Method: Composition-based stats.
 Identities = 256/785 (32%), Positives = 363/785 (46%), Gaps = 104/785 (13%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           +    MGKYHPHG+ AIYDA+ R+AQD+SL + LI+G GNFGS D D PAA RYTE R+ 
Sbjct: 88  VVHNCMGKYHPHGDVAIYDAMVRLAQDFSLNVPLIDGHGNFGSPD-DGPAASRYTEARMS 146

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             A  L+ +LG+DTVDFRPNYDGS +EP VL A YPN+LVNG  GIAVGMATN+  HNLG
Sbjct: 147 NEAMLLVGELGEDTVDFRPNYDGSLEEPSVLPAAYPNLLVNGTSGIAVGMATNMIPHNLG 206

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH- 255
           EV+     +I++P+  LD LME + GPD PTG  +LG   ++ AY TGRG + +R     
Sbjct: 207 EVIGAARWLINHPNATLDKLMEYVPGPDLPTGGSLLGLDEVRKAYETGRGVVRMRANVET 266

Query: 256 -IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDR-QGYRVVI 312
              + S  R+ I VTE+PY V    ++EKI + V + KR+  IAD++D +DR  G R+VI
Sbjct: 267 GPLEGSRGRQAITVTELPYGVGPEKVIEKITDEVNKSKRLTGIADVKDLTDRENGTRLVI 326

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
           E K G +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+  R EVV RR
Sbjct: 327 ECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLKHRYEVVTRR 386

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T+Y   K  +R H++ GL IA+ N+D+V+R+IR S N   A+  LM +            
Sbjct: 387 TRYRRRKREERLHLVDGLLIALLNIDKVIRLIRESENAAAAKDGLMTK------------ 434

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           LSE+Q   IL+  L RLT   R ++ NE + L  EI E   IL 
Sbjct: 435 --------------FKLSEIQATYILDTPLRRLTKYDRLELENEQDKLRAEIAELTTILE 480

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMVVTVSHL 545
             S L  ++  EL  +  +  T RRTR+++G L                 +   V +S  
Sbjct: 481 DESVLKKLVSTELAKIAKDFPTERRTRLIDGDLKEVLAASKPSGPLEVADDPCQVILSAT 540

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G V R       A     + R        D V+ +   +    VL  +S G  +K  V  
Sbjct: 541 GLVARTAAESEEAS----EVRRRNGRVKHDAVSAVVHTTARGQVLLVTSRGRAFKTDVLP 596

Query: 606 LPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           LP+   Q        G A   ++ L +GER+  I P  E   + ++  +   T+ G V+ 
Sbjct: 597 LPVLPEQAGTVSLRGGMAAKELVPLEKGERVVGIAPLGE--QAGDSPGLAIGTRGGVVKV 654

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISAIRVFAG 718
                 +         + L   DEI+           +   +     +RF  S IR   G
Sbjct: 655 CAPDWPV--RSDEFEVISLKPGDEIVGATWLTDGNETLAFISSDSSLLRFAASLIRP-QG 711

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
             S G+ G+ LA     I    +   D ++ E                            
Sbjct: 712 TKSGGMAGMKLAANATAIFFGAIRTDDEEHGEP--------------------------- 744

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKG-FGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                 + V+  G   K T   ++    R+  G+RA    K   
Sbjct: 745 ----------------------MVVTATGQSVKVTPFSEYPAKGRATGGVRAHRFLKGET 782

Query: 838 IGALV 842
              + 
Sbjct: 783 EVQVA 787



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 87/267 (32%), Gaps = 20/267 (7%)

Query: 644 NNLYVVFATKHGNVRRN--KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
           ++   V  +  G V R   +  +  ++ R           D + +V   T    +LL T 
Sbjct: 530 DDPCQVILSATGLVARTAAESEEASEVRRRNGRV----KHDAVSAVVHTTARGQVLLVTS 585

Query: 702 LGQCVR---FPISAIRVFAGRNS-VGVRGIS----LAKGDQVISMAIVLHADADYDERIC 753
            G+  +    P+  +   AG  S  G         L KG++V+   I    +   D    
Sbjct: 586 RGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGERVVG--IAPLGEQAGDSPGL 643

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
            +       ++ + D    +      S++          L    + +  +S      R +
Sbjct: 644 AIGTRGGVVKVCAPDWPVRSDEFEVISLKPGDEIVGATWLTDGNETLAFISSDSSLLRFA 703

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND--QIILVSDKGTLIR-VPVNEI 870
           +   R       G+    +   N           +D +  + ++V+  G  ++  P +E 
Sbjct: 704 ASLIRPQGTKSGGMAGMKL-AANATAIFFGAIRTDDEEHGEPMVVTATGQSVKVTPFSEY 762

Query: 871 RIASRATKGVVIFSTAKDERVVSVERI 897
               RAT GV      K E  V V  +
Sbjct: 763 PAKGRATGGVRAHRFLKGETEVQVAWV 789



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 81/251 (32%), Gaps = 40/251 (15%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA------GRNSVGVRGISL 729
           + L + D+++ +   ++        K G   +F +S I+          R +   R    
Sbjct: 406 IALLNIDKVIRLIRESEN---AAAAKDGLMTKFKLSEIQATYILDTPLRRLTKYDRLELE 462

Query: 730 AKGDQV---ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            + D++   I+    +  D    +++   +     +   +     +        +  +  
Sbjct: 463 NEQDKLRAEIAELTTILEDESVLKKLVSTELAKIAKDFPTERRTRLIDGDLKEVLAASKP 522

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSS-----YDFRISNRSGKGIRATDVSKINEIGAL 841
               +      Q IL+ +  G   RT++      + R   R+G            +  A+
Sbjct: 523 SGPLEVADDPCQVILSAT--GLVARTAAESEEASEVRR--RNG----------RVKHDAV 568

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI---------FSTAKDERVV 892
            AV       Q++LV+ +G   +  V  + +       V +             K ERVV
Sbjct: 569 SAVVHTTARGQVLLVTSRGRAFKTDVLPLPVLPEQAGTVSLRGGMAAKELVPLEKGERVV 628

Query: 893 SVERIRESEIV 903
            +  + E    
Sbjct: 629 GIAPLGEQAGD 639


>gi|262189909|ref|ZP_06048228.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
 gi|262034207|gb|EEY52628.1| DNA gyrase subunit A [Vibrio cholerae CT 5369-93]
          Length = 653

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 245/683 (35%), Positives = 373/683 (54%), Gaps = 92/683 (13%)

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + IE     +E I+V+EIPYQVNKA ++EKIAELV+EK++  I+ LRDESD+ G R
Sbjct: 1   MRSKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMR 60

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +VIE KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R EVV
Sbjct: 61  IVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRREVV 120

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++  
Sbjct: 121 TRRTIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAA 180

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++     +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   L 
Sbjct: 181 MLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLL 240

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            EI   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT
Sbjct: 241 EEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVT 300

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +SH GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ 
Sbjct: 301 LSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRM 360

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           KV++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  
Sbjct: 361 KVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFS---KDKFIFMATGDGTVKKTS 417

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--------- 712
           L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S          
Sbjct: 418 LDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENG 477

Query: 713 ----------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
                           +R   GR + GVRG+ L                           
Sbjct: 478 QPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKL--------------------------- 509

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                      +  +     +   E  +LTV+E G+GKRTS  +
Sbjct: 510 --------------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSE 543

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R 
Sbjct: 544 YPTKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRN 601

Query: 877 TKGVVIFSTAKDERVVSVERIRE 899
           T+GV +  T++ E VV ++RI E
Sbjct: 602 TQGVTLIRTSEGESVVGLQRIDE 624



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 228 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 285

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 286 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 333

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 334 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 393

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 394 PVTEFSKDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 451

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 452 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 511

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 512 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 571

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 572 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 630

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 631 PEGEEALVENDAPVAQDDDGEQE 653


>gi|257439263|ref|ZP_05615018.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
 gi|257198305|gb|EEU96589.1| DNA gyrase subunit A [Faecalibacterium prausnitzii A2-165]
          Length = 749

 Score =  476 bits (1224), Expect = e-132,   Method: Composition-based stats.
 Identities = 215/768 (27%), Positives = 357/768 (46%), Gaps = 56/768 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M  MG+    + 
Sbjct: 25  NAGSVLEDPITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGART 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG   S D    AA
Sbjct: 84  -KSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAA 141

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L+     L  D+ K+TVDF PNYDG+  EP +L   +P +L N   GIAVGMA
Sbjct: 142 -RYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
            NI + NL E+    VA++ +P  D+   M     PDF  G  IL     ++  Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI +R   ++         + +T+IP      A+++KIAELV+  +I +I+D+RDE+D  
Sbjct: 258 SIKVRARYNVV---PGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLN 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ ++LKRG   + ++ +LY+ T L+  FS N   L   +P    +  IL+ + AFR 
Sbjct: 315 GLKLTLDLKRGVDPEKLMAKLYKTTPLEDSFSCNFNVLVSGQPRVMGVREILQEWTAFRM 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RRT Y L+    R H+L GLA  + ++D+ + IIR +                   
Sbjct: 375 ECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTE------------------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                   +++           + EVQ   + E++L  L          E+  L  +I +
Sbjct: 417 --------EETEVVPNLMIGFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIAD 468

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVS 543
             DIL+  +R+  II  EL  V  +   PRR+ I+          +E+ I    + V  +
Sbjct: 469 LNDILAKPARIRRIIINELNDVAKKYAQPRRSEILYDLPEEESGAEEEVIPDYPVTVFFT 528

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K++P    R             +++ D +        +   LFF+    VYK ++
Sbjct: 529 REGYLKKIPPQSLRTAGAH-------KLKEGDEIIHQVETRNNVEALFFTDKQQVYKVRL 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L  G     G  L   L +++GE I  ++   +      + YV+F    G   +  L+
Sbjct: 582 NELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDY-----SGYVLFFFAGGKCAKIPLA 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+      ++ +  +    ++ ++ + T  G+ +    + I     R+S G
Sbjct: 637 SYATKQNRRKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTTRDSQG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           V  ++L K   + S+      +     R       +    + + D  E
Sbjct: 697 VAVVTLKKNQTIASVVPAETLELANPHRYRVRSLPATGALIRAEDEGE 744



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 69/201 (34%), Gaps = 17/201 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             T+ G      +  I   + R +       L +GD++I  +    + +A +      + 
Sbjct: 526 FFTREGY-----LKKIPPQSLRTAG---AHKLKEGDEIIHQVETRNNVEALFFTDKQQVY 577

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +           +    L     ++   +            ++L     G   +     
Sbjct: 578 KVRLNELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSGYVLFFFAGGKCAKIPLAS 637

Query: 817 F-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IAS 874
           +    NR  K ++A    +      L  +  + ++ ++ + +  G ++ V   +I    +
Sbjct: 638 YATKQNR-RKLLKAYSDKE-----PLAKLLFLPEDTELAIRTSAGRMLLVNTAQIAAKTT 691

Query: 875 RATKGVVIFSTAKDERVVSVE 895
           R ++GV + +  K++ + SV 
Sbjct: 692 RDSQGVAVVTLKKNQTIASVV 712


>gi|327335382|gb|AEA49886.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 304

 Score =  475 bits (1223), Expect = e-131,   Method: Composition-based stats.
 Identities = 185/304 (60%), Positives = 246/304 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I
Sbjct: 121 EREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIN 300

Query: 341 MVAL 344
           ++AL
Sbjct: 301 LLAL 304


>gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 478

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 195/512 (38%), Positives = 303/512 (59%), Gaps = 41/512 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ E+ D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y  G
Sbjct: 181 MATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+V+  K      D+++N L+  T L+  + VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           + FR   V RR ++ L+K   R H+L GL +A  NLDEV+ IIR   +P   +  LM+R 
Sbjct: 356 IEFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP---KAVLMER- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      ++++Q  AIL+ +L  L  L    IR E + L 
Sbjct: 412 -------------------------FGITDIQADAILDTKLRHLAKLEEMKIRGEQDELE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
            E ++   +L S  RL  ++++   S + E+ 
Sbjct: 447 KEREKLEQLLGSERRLNTLLEKRNQSRRREIR 478


>gi|28916608|gb|AAO59537.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/306 (60%), Positives = 242/306 (79%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVD D  AA RYTE R+ K A  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDSDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV DNP+I    LME
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSDNPEITNQELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
              GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 YSPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F 
Sbjct: 241 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|28916620|gb|AAO59543.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 306

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/306 (60%), Positives = 244/306 (79%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+G + AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGFRKAYKSGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA  VR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F 
Sbjct: 241 KLIEKIAVSVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|307692620|ref|ZP_07634857.1| DNA gyrase/topoisomerase IV subunit A [Ruminococcaceae bacterium
           D16]
          Length = 750

 Score =  475 bits (1221), Expect = e-131,   Method: Composition-based stats.
 Identities = 215/797 (26%), Positives = 358/797 (44%), Gaps = 62/797 (7%)

Query: 1   MTEHIISSDEEEEKG---------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           M +     + ++            +    IT+ ++ +Y+ YA++VI+ RAIP++ DG KP
Sbjct: 1   MAKKKTPQEGKKFDNPNVMGLHAEVLEQPITETLELNYMPYAMSVIVSRAIPEI-DGFKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLL 110
            HR++L+ M QM +       K A + G+ M K +PHG+AAIYD + R+++ + +L    
Sbjct: 60  SHRKLLYTMYQMKLL-GGARTKSANVVGQTM-KLNPHGDAAIYDTMVRLSRGYGALLHPF 117

Query: 111 IEGQGNFGSV-DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++ +GNFG V   D   AA RYTE RL      L  D+ +DTVDF  NYDG  +EP +L 
Sbjct: 118 VDSKGNFGKVYSRDMAWAASRYTEVRLDAICGELFRDIDQDTVDFVDNYDGKMKEPTLLP 177

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
             +PNVLV+   GIAVGMA+N+   NLGEV D  +A + +P+     LM  ++GPD PTG
Sbjct: 178 TTFPNVLVSANQGIAVGMASNLCGFNLGEVCDTTIAYLKDPEC---DLMATLKGPDLPTG 234

Query: 229 AV-ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
              I     +   Y TGRGS  +R      K+      I + EIPY     A+++K+AEL
Sbjct: 235 GELIYDEKALGEIYRTGRGSFKVRSKWRYLKSE---NLIEIYEIPYSTTSEAIMDKVAEL 291

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           ++  +I +IAD+RDE+D  G ++ I+LKRG   D ++ +L+R T L    S N   L   
Sbjct: 292 IKAGKIKEIADMRDETDLSGLKLTIDLKRGTDPDKLMAKLFRATPLMDSQSCNFNILIAG 351

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
            P    +  IL+ + A+R + V RR  + + K  D+ H+L GL   + ++D  + IIR +
Sbjct: 352 MPRVMGVREILEEWTAWRMDCVRRRVYHEMKKKEDKLHLLKGLRRILLDIDRAIAIIRET 411

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
                                      +D+           + ++Q   + ++RL  +  
Sbjct: 412 E--------------------------EDAEVVPNLMIGFGIDQIQAEYVADIRLRNINK 445

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLL 525
                   E+ +L  EI +    ++   R+  II +EL  VK +   PRRT I     L 
Sbjct: 446 EYILKRTQEVEALEGEIADLQATVNDPKRIRKIITKELTDVKKKYAQPRRTDIVYEHMLE 505

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           +   ED      + + +S  GY+K++     R              ++ D     +  + 
Sbjct: 506 EEPQEDETPDYPVNLFLSREGYLKKITPQSLRMASDQ-------KYKEGDGPFLQWEATN 558

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
              +L F+     YK ++           G  L   LS+   ER+       +      +
Sbjct: 559 RDELLVFTDKQQCYKTRLSEFDDSKASVLGDYLPTKLSMEAEERVLWACIPGDY-----S 613

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             ++F  ++G V R +LS +    R  K+      +  ++S     ++ ++ + +  G+C
Sbjct: 614 GQLLFFFENGKVARVELSAYQTQTRRKKLTGAYSDKSPLVSALLLREDLEMAVYSSDGRC 673

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           + F  +A+     R + GV  ++L     V     +         R        A   L 
Sbjct: 674 MIFHTAALAPKTTRTTQGVNVMALKPKRVVTDAKPLADTPIVNLSRYRARSLPIAGALLR 733

Query: 766 SGDTEEITSLKNDSSVE 782
             D  E      +   +
Sbjct: 734 EEDRGETQMSLLEPESK 750



 Score = 45.9 bits (107), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L   E G   R     ++   R  K          ++   LV+   + ++ ++ + S  
Sbjct: 616 LLFFFENGKVARVELSAYQTQTRRKK-----LTGAYSDKSPLVSALLLREDLEMAVYSSD 670

Query: 860 GTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVER 896
           G  +      +    +R T+GV + +     RVV+  +
Sbjct: 671 GRCMIFHTAALAPKTTRTTQGVNVMALKPK-RVVTDAK 707


>gi|312275250|gb|ADQ57975.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275256|gb|ADQ57978.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275260|gb|ADQ57980.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275262|gb|ADQ57981.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275264|gb|ADQ57982.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275266|gb|ADQ57983.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275270|gb|ADQ57985.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275282|gb|ADQ57991.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275284|gb|ADQ57992.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/401 (52%), Positives = 276/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|332148492|dbj|BAK20095.1| DNA gyrase subunit alpha [Bacillus amyloliquefaciens]
          Length = 301

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/301 (60%), Positives = 239/301 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+
Sbjct: 1   VIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           ++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ 
Sbjct: 61  SMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQD 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    
Sbjct: 121 NYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQE 180

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQV 275
           LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQV
Sbjct: 181 LMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQV 240

Query: 276 NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
           NKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ 
Sbjct: 241 NKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQR 300

Query: 336 L 336
            
Sbjct: 301 S 301


>gi|312275274|gb|ADQ57987.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275278|gb|ADQ57989.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/401 (52%), Positives = 276/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGIRDGQYYLSE 401


>gi|312275246|gb|ADQ57973.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275258|gb|ADQ57979.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275272|gb|ADQ57986.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275276|gb|ADQ57988.1| DNA gyrase subunit A [Haemophilus parasuis]
 gi|312275280|gb|ADQ57990.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/401 (52%), Positives = 276/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDYAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|312275244|gb|ADQ57972.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/401 (52%), Positives = 275/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR  L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYRLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I++  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIEDEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
 gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236]
          Length = 471

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 199/511 (38%), Positives = 288/511 (56%), Gaps = 48/511 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++           G   + +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDLT-------HDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 54  SELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 113

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 114 D-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNG 172

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++GPDFPT   +I  R  I
Sbjct: 173 TTGIAVGMATDIPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEI 232

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           +  Y  GRGS+ +R +   E  S      V+T +P+QV+ A +LE+IA  +R K++  + 
Sbjct: 233 RKIYQNGRGSVRMRALWKKEDGSA-----VITALPHQVSGAKVLEQIANQMRAKKLPMVE 287

Query: 298 DLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
           DLRDESD +   R+VI  +      D ++N L+  T L+  + +NM  +   ++P    L
Sbjct: 288 DLRDESDHENPTRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGL 347

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           + IL  ++ FR + V  R  Y L K   R H+L GL IA  N+DEV+ IIR    P+   
Sbjct: 348 LEILTEWLVFRRQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPK--- 404

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             +SE Q  AILEL+L  L  L    IR
Sbjct: 405 --------------------------PLLMQHFSISETQAEAILELKLRHLAKLEEVKIR 438

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            E + L  E  +   +L+S  +L  +IK+E 
Sbjct: 439 GEQDELAKERDQLQALLASERKLNTLIKKED 469


>gi|259129711|gb|ACV95365.1| topoisomerase II subunit A [Brucella melitensis]
          Length = 292

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 205/292 (70%), Positives = 246/292 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQ
Sbjct: 181 ELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           VNKA+M+EK+AEL R+KRI  I+DLRDESDR+GYRVV+ELKR A ADV+LNQ
Sbjct: 241 VNKASMIEKMAELARDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQ 292


>gi|332141550|ref|YP_004427288.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551572|gb|AEA98290.1| DNA gyrase subunit A [Alteromonas macleodii str. 'Deep ecotype']
          Length = 277

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 163/268 (60%), Positives = 206/268 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +  K I  V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++  ++NK 
Sbjct: 3   DNAKEILPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVDF PNYDG+   P VL  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMAKIAHELLADLDKETVDFVPNYDGTEYIPEVLPTKVPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL EV++GCVA+I +P I +D LM  I GPDFPT A+I GR GI++AY TGRG I +
Sbjct: 183 PPHNLTEVINGCVALIQDPSITIDDLMTHIPGPDFPTAAMISGRKGIEDAYRTGRGKIYL 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           R  + IE  +  +E IVV EIPYQVNKA
Sbjct: 243 RAKAEIETDANGKETIVVNEIPYQVNKA 270


>gi|225017578|ref|ZP_03706770.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
 gi|224949638|gb|EEG30847.1| hypothetical protein CLOSTMETH_01506 [Clostridium methylpentosum
           DSM 5476]
          Length = 744

 Score =  473 bits (1217), Expect = e-131,   Method: Composition-based stats.
 Identities = 203/731 (27%), Positives = 367/731 (50%), Gaps = 55/731 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    ITD ++ +Y+ YA++VIL RA+P++ DG KP HR++L+ M +MG+    +  K A
Sbjct: 26  VEEQLITDTLEKNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLTGART-KSA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFG---SVDGDPPAAERYT 131
            I G+ M + +PHG+  IY+ + R+++ + +L    ++ +GNFG   S D    AA RYT
Sbjct: 84  NIVGQTM-RLNPHGDQTIYETMVRLSRGYQALLHPYVDSKGNFGKAYSRDM-AYAASRYT 141

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L    + L  D+ KDTV+F PNYD S +EP +L   +P++LVN   GIAV MA+ I 
Sbjct: 142 EAKLDPICNELFRDIDKDTVEFVPNYDNSTKEPRLLPTTFPSILVNSNVGIAVSMASAIC 201

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVI 250
             NL EV +  +A + N + DL     I++GPDFP G   +   + ++  Y TGRGSI +
Sbjct: 202 PFNLQEVCEATIAFMKNSECDLTE---ILKGPDFPGGGFLVQNPSELEKIYRTGRGSIRV 258

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   + +K++     I +TEIP      A+++KI +LV++ ++ +I+D+RDE+D  G ++
Sbjct: 259 RSRYNYDKSN---NCIEITEIPPTTTVEAIMDKIIDLVKQNKVKEISDMRDETDLSGLKL 315

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRG   D ++ +L++ T L+  +S N   L    P    +  +L  +VAFR E + 
Sbjct: 316 TIDLKRGTDPDRLMRRLFKLTPLEDSYSCNFNVLIAGTPRVLGVYDLLDEWVAFRVECIK 375

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           RR  + L K +++ H+L GL   + ++D+ +RI+R +                       
Sbjct: 376 RRVWFELTKKKEKLHLLQGLQKILLDIDKAIRIVRETE---------------------- 413

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
               ++            + E+Q   + E++L  L          E++ L  EI +  +I
Sbjct: 414 ----EEKEVVPNLMIGFGIDEIQAEYVAEIKLRHLNREYILKRTAEIDQLIQEIADMEEI 469

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCI--VREDMVVTVSHLGYV 548
           L+ + R+  II +EL  V  +   PRR+  +      +DE+        + V +S  GY 
Sbjct: 470 LADKRRVKQIIIKELKDVIKKYAQPRRSLFIYPDSVFDDEEEEEIPNYPVHVFLSEQGYF 529

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++     R             ++++D +      + +T +LFF+    VYK  + + P 
Sbjct: 530 KKITPQSLRMSGEH-------KLKEDDRMITHIETTNNTDLLFFTDKMQVYKYNLSQFPD 582

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                 G+ +   L   + ER+  +    +   +     ++F  ++G V +  +  +   
Sbjct: 583 TKASVLGEYVPAKLGFEEEERLVGMALTKDYSGN-----ILFFFENGKVAKVPIKSYETK 637

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
               K+A     +  ++++    ++ + ++T+   + + F  + I V A +N+ GV+ ++
Sbjct: 638 TNRKKLANAYSDKSPLIALFPEAEDGEYIITSNNQKVLLFSSAMIAVKATKNTQGVQVMT 697

Query: 729 LAKGDQVISMA 739
           L K   V S+ 
Sbjct: 698 LNKNCTVESVV 708



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 64/176 (36%), Gaps = 9/176 (5%)

Query: 728 SLAKGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L + D++I+ +    + D  +      +   +  +   +  +     +      E    
Sbjct: 544 KLKEDDRMITHIETTNNTDLLFFTDKMQVYKYNLSQFPDTKASVLGEYVPAKLGFEEEER 603

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVAVF 845
                  K     IL   E G   +     +   +NR          +  ++   L+A+F
Sbjct: 604 LVGMALTKDYSGNILFFFENGKVAKVPIKSYETKTNRKKL------ANAYSDKSPLIALF 657

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRES 900
           P  ++ + I+ S+   ++      I + A++ T+GV + +  K+  V SV   +E 
Sbjct: 658 PEAEDGEYIITSNNQKVLLFSSAMIAVKATKNTQGVQVMTLNKNCTVESVVPYQEE 713


>gi|261367452|ref|ZP_05980335.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
 gi|282570224|gb|EFB75759.1| DNA gyrase subunit A [Subdoligranulum variabile DSM 15176]
          Length = 747

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 215/765 (28%), Positives = 358/765 (46%), Gaps = 56/765 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    IT+ ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K 
Sbjct: 27  EIIETPITETLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART-KS 84

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERY 130
           A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG   S D    AA RY
Sbjct: 85  ANIVGSTM-HLNPHGDAAIYDTMVRMGRSNESLLVPFVDSKGNFGKAYSRDMAYAAA-RY 142

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L+     L  D+ KDTVDF PNYDG+  EP +L   +P +L N   GIAVGMA+NI
Sbjct: 143 TEAKLEPVCEELFRDIDKDTVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMASNI 202

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIV 249
            + NL E+ +  +A++ +   DL     II  PDF  G  I      +KN    GRGS+ 
Sbjct: 203 CSFNLEELCNATIALMKDAKADLKE---IIPAPDFVGGGTILYDAAEMKNVLENGRGSVR 259

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +KT+     I VT IP      A+++KI ELV+  +I +I+D+RDE+D  G +
Sbjct: 260 VRAQWSYDKTN---NCIDVTHIPPTTTVEAIMDKITELVKLGKIREISDMRDETDLNGLK 316

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKRG   D ++ +L++ T L+  F+ N   L   +P+   +  IL  ++AFR E V
Sbjct: 317 LTIDLKRGQDPDKLMARLFKATPLEDSFACNFNVLIAGQPKVLGVRDILLEWIAFRAECV 376

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT Y L   + R H+L GL   + ++D+ + I+R +                      
Sbjct: 377 RRRTYYDLQGKQKRLHLLQGLKAILLDIDKAIEIVRNT---------------------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                +++           + EVQ   + E++L  L          E+  L   I++  D
Sbjct: 415 ----AEEAEVVPNLMIGFGIDEVQAEYVAEIKLRHLNREYILKRTAEIEELESAIEDLQD 470

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVSHLG 546
           +L   +R+  II  EL  V  +   PRR  I+         E E  I    + +  +  G
Sbjct: 471 VLKRPARINKIIMNELSDVAKKYGKPRRCEILYEVPASEAEEPEQQIPDYPVHLFFTRDG 530

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y K++     R             ++D D V      +    +LFF++   VYK   +  
Sbjct: 531 YFKKITPQSLRMSGEQ-------KLKDGDEVLFTCESTNSVELLFFTNHHQVYKSHAYDF 583

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  + + L + +GE    ++  P+ +       ++F  ++G   +  LS + 
Sbjct: 584 ADSKASVLGDYVASSLGMEEGEVPLYMVVTPDYKGW-----MLFFFQNGKCAKVPLSSYE 638

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 K+      + E+  +    +E ++ + T   + +    + I   + R++ GV  
Sbjct: 639 TKQNRRKLLKAYSDKAELACMRYLPEETELAIFTSNNRLLLAGSALIPEKSTRDTAGVNV 698

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +SL K  ++  + +    +     R       +A   L + D+ E
Sbjct: 699 VSLKKNARIARVTLSEGLELAEAHRYRVRTLPAAGAILRADDSVE 743



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 20/214 (9%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             T+ G   +    ++R  +G          L  GD+V+ +       +  +      + 
Sbjct: 525 FFTRDGYFKKITPQSLR-MSGEQ-------KLKDGDEVLFTCESTNSVELLFFTNHHQVY 576

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A     S  +     + +   +E              + ++L   + G   +     
Sbjct: 577 KSHAYDFADSKASVLGDYVASSLGMEEGEVPLYMVVTPDYKGWMLFFFQNGKCAKVPLSS 636

Query: 817 FRI-SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS- 874
           +    NR         +   ++   L  +  + +  ++ + +    L+      I   S 
Sbjct: 637 YETKQNRRKL------LKAYSDKAELACMRYLPEETELAIFTSNNRLLLAGSALIPEKST 690

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
           R T GV + S  K+ R+    R+  SE ++ AE+
Sbjct: 691 RDTAGVNVVSLKKNARI---ARVTLSEGLELAEA 721


>gi|312275248|gb|ADQ57974.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 210/401 (52%), Positives = 275/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KRI  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR S   + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|284049791|emb|CBJ16554.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 303

 Score =  473 bits (1216), Expect = e-131,   Method: Composition-based stats.
 Identities = 183/303 (60%), Positives = 241/303 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS
Sbjct: 61  AQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME I
Sbjct: 121 EREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYI 180

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
            GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA +
Sbjct: 181 PGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARL 240

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
           +EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N
Sbjct: 241 IEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGIN 300

Query: 341 MVA 343
           ++A
Sbjct: 301 LLA 303


>gi|327335380|gb|AEA49885.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 303

 Score =  472 bits (1215), Expect = e-131,   Method: Composition-based stats.
 Identities = 184/303 (60%), Positives = 245/303 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMA
Sbjct: 1   LPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS 
Sbjct: 61  QDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I 
Sbjct: 121 REPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIP 180

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++
Sbjct: 181 GPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLI 240

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N+
Sbjct: 241 EKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINL 300

Query: 342 VAL 344
           +AL
Sbjct: 301 LAL 303


>gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 465

 Score =  472 bits (1215), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/494 (38%), Positives = 287/494 (58%), Gaps = 56/494 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 1   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 60  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 120 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 180 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 239

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 240 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 299

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 300 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 358

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 359 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYL 418

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 419 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 449

Query: 456 AILELRLARLTGLG 469
           +IL +RL  L  L 
Sbjct: 450 SILNMRLRSLRKLE 463


>gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
 gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14]
          Length = 704

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 234/759 (30%), Positives = 377/759 (49%), Gaps = 71/759 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L K A  LL +LG+ TV+++PN+DG+ QEP +L AR P++L+N
Sbjct: 61  PD-DPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLN 119

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTG 236
           G  GIAVGMAT+IP HN+ EVV+  + +I++P   L  LM+ ++GPDFPT   +I   + 
Sbjct: 120 GVTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSD 179

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++  Y TGRGSI +R V H E +      IV++ +P+QV+ A +LE+IA  +R K++  +
Sbjct: 180 LEKIYQTGRGSIKMRAVWHKEGSD-----IVISALPHQVSGAKLLEQIAGQMRAKKLPMV 234

Query: 297 ADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
            DLRDESD +   R+VI  +      D ++N L+  T L+  F VN+  +    +PE   
Sbjct: 235 EDLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNNRPEVKG 294

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L  IL  ++ FR E V  R +Y L+K   R H+L GL IA  N+DEV+ IIR    P   
Sbjct: 295 LTQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEP--- 351

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +  LM+R                            +S++Q  AIL+ +L  L  L    I
Sbjct: 352 KGILMER--------------------------FGISDIQADAILDTKLRHLAKLEEVKI 385

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
           R E ++L  E  +  ++L S  RL  ++K+EL +  ++    RR+ IVE        + D
Sbjct: 386 RGEQDALDKERAKLEELLGSERRLNTLLKKELKADAEKYGDDRRSPIVERAEAKALTERD 445

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  E + V +S  G+V        R  +        +  +  D         ++  V F
Sbjct: 446 LMPNEMITVVISEKGWV--------RHAKGHEVDCHSLNYKSGDNYLAHACGKSNQQVAF 497

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y  +   LP    + +G+ +   L++ +G  I  ++   +D+        +  
Sbjct: 498 LGSDGRSYSLEAHTLPSA--RGQGEPITGRLNITEGSSIRQVIMGEDDQLW------LVG 549

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFP 709
           +  G     K SD +  NRSGK  + L +  E+L+ +       ++IL  T  G+ + FP
Sbjct: 550 SDAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVNDLQHDEILAVTNQGRMLLFP 609

Query: 710 ISAIRVFAGRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           I  +   +     G + I++        ++V+S  + + + +       Y        + 
Sbjct: 610 IKDLPQLS--KGKGNKIINIPSAKAKAREEVVSHLLAIPSGSS---ITLYAGKRKLGLKP 664

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
              D       +  + +   +      E+  +    L V
Sbjct: 665 TDLDNFRGERGRRGALLPRGLQRVTQIEIDAEPTEPLVV 703



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 13/117 (11%)

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
             S  R   +   +Q  L  S+ G+G      D    NRSGK +     +       L+A
Sbjct: 530 EGSSIRQVIMGEDDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVNLPNNS-----ELLA 584

Query: 844 VFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              VND  +D+I+ V+++G ++  P+ ++   S+  KG  I +         E VVS
Sbjct: 585 PQAVNDLQHDEILAVTNQGRMLLFPIKDLPQLSK-GKGNKIINIPSAKAKAREEVVS 640


>gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 470

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 192/494 (38%), Positives = 287/494 (58%), Gaps = 56/494 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +I   + E + I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI+  M
Sbjct: 6   MGKSLIPPGDGE-EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAM 64

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  ++ Y KCARI G+VMGK+HPHG+A+IYDAL R+AQD+++R  L++GQGNFG++
Sbjct: 65  RLLRLNPDQAYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNI 124

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ + A  LL+ + ++ +DFRP Y+   +EP+VL   +PN+L NG  
Sbjct: 125 DGDNAAAMRYTEARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSA 184

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME---------------------- 218
           GIAVGMATNIP HN+ E+    + +I++PD  ++ L+                       
Sbjct: 185 GIAVGMATNIPPHNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKC 244

Query: 219 IIRGPDFPTGAVILGRTG-IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            +RGPDFPTG +++   G I  AY TGRG+  +R   H E+ +     IVVTEIPYQV K
Sbjct: 245 KVRGPDFPTGGILVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQK 304

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA-SADVILNQLYRYTSLQSL 336
           + ++EKIAEL+  K++  + D+RDES     R+V+E K      ++++  L++ T L+S 
Sbjct: 305 SRLIEKIAELLLAKKLPLLDDIRDESAE-DIRIVLEPKNRTVDPELLMESLFKLTELESR 363

Query: 337 FSVNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            S+NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  
Sbjct: 364 VSLNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYL 423

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           NLDEV+RIIR    P+                                     L++VQ  
Sbjct: 424 NLDEVIRIIREEDEPKQ-----------------------------ELMRAFELTDVQAE 454

Query: 456 AILELRLARLTGLG 469
           +IL +RL  L  L 
Sbjct: 455 SILNMRLRSLRKLE 468


>gi|312275268|gb|ADQ57984.1| DNA gyrase subunit A [Haemophilus parasuis]
          Length = 401

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 208/401 (51%), Positives = 275/401 (68%), Gaps = 8/401 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M Q G   +K YVK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDQSGNVSSKPYVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           S+DGD PAA RYTE R+QK    LL DL K+TVDF PNYDG    P VL  + P +LVNG
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP HNL EV++GC+A I+N  I ++ LM+ I GPDFPT A+I GR GI+
Sbjct: 121 SSGIAVGMATNIPPHNLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAIINGRKGIE 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           +AY TGRG + +R  + +E TS  REQIVVTE+PYQVNK  ++EKIAELVR+KR+  I+ 
Sbjct: 181 DAYRTGRGKVYVRAKASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRVEGISS 240

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           + D SD++G  +VIE+K  A  +V+LN LY  T +Q  F +NMVAL+  +P+ F L  I+
Sbjct: 241 IEDYSDKKGISIVIEIKNNAVGEVVLNNLYALTQMQVTFGINMVALDHGQPKIFNLKQII 300

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +AFV  R EVV RRT + L KAR+RAH+L GLAIA+AN+D V+ +IR     + AR  L+
Sbjct: 301 EAFVMHRREVVTRRTVFELRKARERAHILEGLAIALANIDPVIELIRNFKTADEAREGLL 360

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGS--------DGTMYLSE 451
            R W+  ++  +++     +             DG  YLSE
Sbjct: 361 DRPWSLGNVAPMLEAAGVDASRPEDLASEFGVRDGQYYLSE 401


>gi|73916130|gb|AAZ92933.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 632

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 256/711 (36%), Positives = 397/711 (55%), Gaps = 85/711 (11%)

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
               V+DNP++    LME++ GPDFPTGA+++G++GI  AY TG+GSIV+R  + IE T 
Sbjct: 1   AVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSRTEIETTK 60

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
             RE+IVVTE PY VNK  + E I  LV+EKRI  I  +RDES+R+G R VIE+KR ASA
Sbjct: 61  TGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASA 120

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
           +VILN L++ T +Q+ F  NM+A+    P+  +L  IL A++  ++EVVVRRT++   KA
Sbjct: 121 NVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKA 180

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
             RAH+L GL IA+ ++DEV+RIIR S     A+ ELM +                    
Sbjct: 181 EARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK-------------------- 220

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                   LSE Q++AIL++RL RLTGL RD I++E + L   I +  DIL+   R+  I
Sbjct: 221 ------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQI 274

Query: 501 IKQELLSVKDELDTPRRTRIVE-GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
           IK EL  VK +    RRT ++   +L +EDED I   D+++T+S+ GY+KR+    + AQ
Sbjct: 275 IKDELDEVKRKFSDKRRTELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQ 334

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           +RGG+G  G  ++D+DFV +L   STH  +LFF++ G VY+ K + +P     A+G  ++
Sbjct: 335 KRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVV 394

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
           N+L L++ E I T++    D S  ++ Y+ F T+HG V+R  + +F  I ++G  A+ L 
Sbjct: 395 NLLKLDEDESIQTVINVESDRS--DDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLK 452

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+++V     + DI++ TK G  VRF  SA+R  + R + GV+G++L +GD V+  +
Sbjct: 453 DEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS-RIATGVKGVNLREGDTVVGAS 511

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
                                                                L   +  
Sbjct: 512 -----------------------------------------------------LITDQDE 518

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L ++EKG+GKRT + ++    R GKG++   +++ N  G L  +  V  ++ +++++D 
Sbjct: 519 VLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKN--GLLAGLMTVQGDEDLMIITDT 576

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           G +IR  +  I    RAT GV +    +D ++V+   +  +E  +     E
Sbjct: 577 GVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 627


>gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
 gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39]
          Length = 433

 Score =  470 bits (1210), Expect = e-130,   Method: Composition-based stats.
 Identities = 188/461 (40%), Positives = 278/461 (60%), Gaps = 41/461 (8%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           ++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R 
Sbjct: 356 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR- 411

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
                                      L+++Q  AIL+ + 
Sbjct: 412 -------------------------FDLTDLQADAILDTKY 427


>gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
           Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  470 bits (1209), Expect = e-130,   Method: Composition-based stats.
 Identities = 197/542 (36%), Positives = 300/542 (55%), Gaps = 43/542 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  ++          + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M +
Sbjct: 260 EDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSE 319

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D 
Sbjct: 320 LGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD- 378

Query: 123 DPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DP   AA RYTE +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  
Sbjct: 379 DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTT 438

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKN 239
           GIAVGMAT+IP HNL EVV G +A+I NP    + L E I  PD PT   +I     +  
Sbjct: 439 GIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLK 498

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
              TGRGS  +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+
Sbjct: 499 IQTTGRGSYRMRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDV 553

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIG 356
           RDESD +   R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  
Sbjct: 554 RDESDHENPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRR 613

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++  R++ V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+     
Sbjct: 614 ILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK----- 668

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           + E+Q  AILEL+L  L  L   +IR+E
Sbjct: 669 ------------------------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHE 704

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIV 534
            + L  +     + L +   L  +I  EL     +    RR+ IV       ++++D + 
Sbjct: 705 QDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMP 764

Query: 535 RE 536
            E
Sbjct: 765 AE 766


>gi|12597946|gb|AAB67040.2| gyrase A subunit [Pseudomonas stutzeri]
          Length = 275

 Score =  470 bits (1208), Expect = e-130,   Method: Composition-based stats.
 Identities = 166/273 (60%), Positives = 207/273 (75%), Gaps = 1/273 (0%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ + AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMARLAHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNLGEV+DGC+ +I NPDI +D LM  I GPDFPT ++I  R GI  AY TGRG I +
Sbjct: 183 PPHNLGEVIDGCLVLIANPDISIDELMTHIPGPDFPTASIINSRAGIIEAYRTGRGRIYM 242

Query: 251 RGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLE 282
           R  S IE       EQIV+TE+PYQ+NKA ++E
Sbjct: 243 RARSIIEDIDKVGAEQIVITELPYQLNKARLIE 275


>gi|28916598|gb|AAO59532.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 305

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 183/305 (60%), Positives = 242/305 (79%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
             QD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 61  RGQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           + +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME 
Sbjct: 121 AEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGI 300

Query: 340 NMVAL 344
           N++AL
Sbjct: 301 NLLAL 305


>gi|221482404|gb|EEE20752.1| DNA gyrase subunit A, putative [Toxoplasma gondii GT1]
          Length = 1594

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 203/608 (33%), Positives = 320/608 (52%), Gaps = 59/608 (9%)

Query: 3   EHIISSDEEEEKGI--TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           +   +    + K +        +E++ S+L YA + IL RA+PD+RDGLKPVHRR+++ M
Sbjct: 258 KERPAPTGSDAKDVALLDTQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAM 317

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            Q+ +  +  + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +  R  LIEG GNFGSV
Sbjct: 318 QQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGSV 377

Query: 121 DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           DGDPPAA RYTECRL +     LL +L    V FRPN+D + +EPVV  A  P VL+ G 
Sbjct: 378 DGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGS 437

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGM+T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I  
Sbjct: 438 SGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIPG 497

Query: 240 AYATGRGSIVIRGVSHIE------------------------------KTSGDREQIVVT 269
           AY  GRG +++RG  H+E                                  +  ++V+T
Sbjct: 498 AYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRHVRNGRKNERRLVIT 557

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PY VNK+ +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L +
Sbjct: 558 ELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLK 617

Query: 330 YTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           +T+LQ    ++++AL    KP RF+L  +L +++AFR   + R       + + R+H+L 
Sbjct: 618 HTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLE 677

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL  AV+ +D+VV+ +R S + + A+++L +                           + 
Sbjct: 678 GLLRAVSLMDDVVKTVRESLSADDAKQKLTE-------------------------PPLG 712

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            S  Q +A+L L L+RLT L R  +  E  +    + E   +L+    +  ++ +EL + 
Sbjct: 713 FSPAQAQALLRLTLSRLTRLERRQLEEEAKAQKDRLSELASLLAHDREIYELMVEELQAH 772

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K     PR+T+++      +              +             R      K  + 
Sbjct: 773 KTRHKAPRKTKVLGLRRAQQRARREEDARATTARNSQEAFAETDRHDSRRPDGREKEENP 832

Query: 569 VVMRDEDF 576
           V  + E  
Sbjct: 833 VKEKKETE 840



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 86/275 (31%), Gaps = 95/275 (34%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V     + + +    
Sbjct: 1325 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESR 1384

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            K   +       ++                        +  E  +L V+  GFGKR    
Sbjct: 1385 KEGDSDETQSKNESSN----------------------EKAEPSLLIVTAAGFGKRIRVS 1422

Query: 816  DFRISNRSGKGIRATDVSKINEIGA----------------------------------- 840
              R+  R G G+R   + K  ++                                     
Sbjct: 1423 ALRMQRRRGVGVRVIRLVKRKKVAREGDDRGLSDEAVGQESQGFPDEEPDSEERADPRSV 1482

Query: 841  ----------------LVAVFPVNDND--------------QIILVSDKGTLIRVPVNEI 870
                            +VAV  +  +D              +++ V+  G L+R     I
Sbjct: 1483 SQEKDPQSPETEGDNYVVAVLALPASDLPNRPKKSKGSDNAELLSVTQNGFLLRQSCRSI 1542

Query: 871  R-IASRATKGVVIFST-------AKDERVVSVERI 897
                 R  +GV +          +  + +V+ + +
Sbjct: 1543 PMPRGRLARGVSLQRLPATGKSRSSTDLIVAADIV 1577



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 95/308 (30%), Gaps = 56/308 (18%)

Query: 644  NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQEND------ 695
               ++V  T  G + + KL   +        K  + L   D I +     +E +      
Sbjct: 1165 KAKFLVVVTDQGRIAKIKLKRILGRRCETKVKKLLSLVQGDSIRAAALLEEEVEPLARGR 1224

Query: 696  ILLTTKLGQCVRFPISAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            +    K  + +R   S        R +         K D+          + + ++    
Sbjct: 1225 VSGAGKEIKHLRGNGSECNATDEERGAR--------KKDREEEDEETTEKEEEEEDDEEE 1276

Query: 755  MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE---QFILTVSEKGFGKR 811
                  +       +  +    +             +  + ++     I+ V+ +G G R
Sbjct: 1277 EDEEDEEEEEEEAGSRLVEDEDDMGGEGAEGEGTDLKSEEKRDTNSPSIVIVTRQGMGLR 1336

Query: 812  TSSYDFRISNR-SGKGIRATDVSKINEIGALVAVFP-VNDN------------DQ----- 852
              +   R S     +G+RA  +   + + ++  V P V ++            D+     
Sbjct: 1337 FPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESRKEGDSDETQSKN 1396

Query: 853  ----------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
                      +++V+  G   R+ V+ +R+  R   GV +    K ++V         E 
Sbjct: 1397 ESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKRKKVA-------REG 1449

Query: 903  VDEAESTE 910
             D   S E
Sbjct: 1450 DDRGLSDE 1457


>gi|28916622|gb|AAO59544.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 306

 Score =  469 bits (1206), Expect = e-129,   Method: Composition-based stats.
 Identities = 182/306 (59%), Positives = 241/306 (78%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           G+ +EPVV+ +R+PN+LVNG  GIAVGMATNI  H LGEV++G +A  +NP+I    LME
Sbjct: 121 GAEREPVVMPSRFPNLLVNGAAGIAVGMATNILPHQLGEVIEGVLAESENPEITNQELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
            I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 YIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F 
Sbjct: 241 RLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|146217173|gb|ABQ10651.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 183/306 (59%), Positives = 245/306 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD+
Sbjct: 1   VRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           + R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EP
Sbjct: 61  NYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           VV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPD
Sbjct: 121 VVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKI
Sbjct: 181 FPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKI 240

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           A+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL
Sbjct: 241 ADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLAL 300

Query: 345 NGYKPE 350
              +P+
Sbjct: 301 VDGQPK 306


>gi|154496378|ref|ZP_02035074.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
 gi|150274461|gb|EDN01538.1| hypothetical protein BACCAP_00666 [Bacteroides capillosus ATCC
           29799]
          Length = 747

 Score =  468 bits (1203), Expect = e-129,   Method: Composition-based stats.
 Identities = 211/755 (27%), Positives = 357/755 (47%), Gaps = 67/755 (8%)

Query: 1   MTEHIISSDEEEEKG----------ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M +     +  + K           +    IT+ ++ +Y+ YA++VI+ RAIP++ DG K
Sbjct: 1   MAKKKAPEEGAKHKNNPNVMGLRPEVLEQPITETLEINYMPYAMSVIVSRAIPEI-DGFK 59

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLL 109
           P HR++L+ M QM +       K A + G+ M K +PHG+AAIYD + R+++ + +L   
Sbjct: 60  PSHRKLLYTMYQMKLL-GGARTKSANVVGQTM-KLNPHGDAAIYDTMVRLSRGYGALLHP 117

Query: 110 LIEGQGNFGSV-DGDPP-AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
           L++ +GNFG V   D   AA RYTE RL      L  D+ +DTVDF  NYDG+ QEP +L
Sbjct: 118 LVDSKGNFGKVYSRDMAWAASRYTEVRLDGICAELFRDIDQDTVDFVDNYDGTMQEPTLL 177

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT 227
              +PNVLV+   GIAVGMA+N+   NL EV D  V  + +PD DL A++   + PDFPT
Sbjct: 178 PTTFPNVLVSANQGIAVGMASNLCGFNLAEVCDATVEYLKHPDCDLTAVL---KAPDFPT 234

Query: 228 GAV-ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           G   +     I   Y TGRGS  +R      K+      I + EIPY     A+++K+AE
Sbjct: 235 GGELLYDAAEIAQIYNTGRGSFKVRARWRYLKSE---NLIEIYEIPYSTTVEAIMDKVAE 291

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L++  ++ +IAD+RDE+D  G ++ I+LKRG   D ++ +L+R T L   F+ N   L  
Sbjct: 292 LIKAGKVKEIADMRDETDLTGLKLTIDLKRGTDPDKLMQKLFRATPLMDSFACNFNILIA 351

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
             P    +  IL+ + A+R E V RRT +++ K +++ H+L GL   + ++D  ++IIR 
Sbjct: 352 GMPRVMGVREILEEWTAWRMEGVRRRTYFVMKKKQEKLHLLKGLKKILLDIDRAIKIIRE 411

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           +                           +D+           +  +Q   + +++L  + 
Sbjct: 412 TE--------------------------EDAEVVPNLMIGFGIDNIQAEYVADIKLRNIN 445

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
                    E ++L  EI +  DI+S+  R+  II  EL +VK +   PRRT I+     
Sbjct: 446 KEYILKRIEETSTLEEEIADLQDIVSNPGRIKKIIIAELGAVKKKYAQPRRTEIIYEHQR 505

Query: 527 MEDEDCI---VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
           + + +         +   +S  GY K++  +  R              ++ D     +  
Sbjct: 506 LSEPEPEEEIPDYPVTAFLSREGYFKKITPASLRMNSEQ-------KYKEGDGAWLQWEC 558

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +    +L F+     YK ++           G  L   L +  GE +       +   + 
Sbjct: 559 TNRDELLVFTDRQQCYKTRMSDFDDAKASVLGDYLPTKLEMEAGESVVWACVPGDYSGN- 617

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
               ++F  ++G   R +LS +    R  K+      +  + +     ++ ++ + +  G
Sbjct: 618 ----LLFFFRNGKAARVELSAYQTQTRRRKLTGAYSDKSPLAAALLLREDLELAVISTEG 673

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKG---DQV 735
           +C+ F  + +   A R + GV  ++L      D+V
Sbjct: 674 RCLIFHTALLAPKATRTTQGVNVMTLKPKYSVDRV 708



 Score = 44.4 bits (103), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L     G   R     ++   R  K          ++   L A   + ++ ++ ++S +
Sbjct: 618 LLFFFRNGKAARVELSAYQTQTRRRK-----LTGAYSDKSPLAAALLLREDLELAVISTE 672

Query: 860 GTLIRVPVNEI-RIASRATKGVVIFSTAKDERVVSVERIRESEI 902
           G  +      +   A+R T+GV + +        SV+R+   E 
Sbjct: 673 GRCLIFHTALLAPKATRTTQGVNVMTLKPK---YSVDRVEPVEG 713


>gi|156084089|ref|XP_001609528.1| DNA gyrase A subunit [Babesia bovis T2Bo]
 gi|154796779|gb|EDO05960.1| DNA gyrase A subunit, putative [Babesia bovis]
          Length = 1051

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 245/957 (25%), Positives = 409/957 (42%), Gaps = 123/957 (12%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + + DE+  S++ YA+++ILGRA+PD RDGLK VHRRIL+ M  M +  +  Y KCA
Sbjct: 98   VQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRKCA 157

Query: 76   RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            ++ G+V+GKYHPH + ++YDAL R++Q + +R+ L++G GNFGS D DPPAA RYTECRL
Sbjct: 158  KVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTD-DPPAAMRYTECRL 216

Query: 136  QKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               +   LL ++GK+TVD  PN+D +  EP VL ++ P +L+NG  GIAVG+ATNIP HN
Sbjct: 217  SPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPPHN 276

Query: 195  LGEVVDGCVAVIDNP-DIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVIRG 252
              E++     +  N  ++D + L+ I+RGPDFPTG  I      ++  Y TG+GSI+++ 
Sbjct: 277  PEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIMLQA 336

Query: 253  VSHIEKTSGDRE--------------------------QIVVTEIPYQVNKAAMLEKIAE 286
                E+    R                            I+V E+PY V  + ++  I++
Sbjct: 337  KYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAISK 396

Query: 287  LVREKRIVDIADLRDESDRQGYRVVIELKRGA----SADVILNQLYRYTSLQSLFSVNMV 342
             V    +  I+DLRDESDR G R+VIELK+        + I+ +L + + L S F  N +
Sbjct: 397  AVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCNFI 456

Query: 343  ALNG--YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            AL+    KP R +L   LK ++ FR + V +R +    +A++R +++ G AIA   +D++
Sbjct: 457  ALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKIDDI 516

Query: 401  VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            V ++R S +   A R L ++ +                          L+  Q  A+L +
Sbjct: 517  VHMVRNSSSSAEAMRMLSEKRYG------------------------GLNAEQASAVLRM 552

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD---ELDTPRR 517
             L++L+ + RD I  E   L   IK    IL   S +  +I  EL  ++    +  T R 
Sbjct: 553  SLSQLSRIERDKIDLEEKELSESIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRH 612

Query: 518  TRIV------------EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
                            +   D   E     E+ V ++S       +            K 
Sbjct: 613  RCTTLSVSGHTSLGDGDVAQDYPPELGGNDEEFVDSISATIAEDHIANEPGNDPGDLVKQ 672

Query: 566  RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
               +   +      L +++ +  +         ++ +  R    S   +       +   
Sbjct: 673  NPDLEGHNPHDEPSLIVMNNYGLMQRIKLDNSFFRSQKSRYIPSSRLQQPYQGQYSIGEG 732

Query: 626  QGERITTIMPFPE----DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI------- 674
            + E +   +   E              +  +K G      +S     N+   I       
Sbjct: 733  ENEDVAPEITQSELQLHYGVCRPGDSCMMISKDGTCFVLPVSALRLCNKGYSIWKQVKLK 792

Query: 675  ---------------------------AMKLDSRDEILSVETCTQENDILLTTK----LG 703
                                         KL   +    +     +  + + +      G
Sbjct: 793  SPENVEYFTVTSKLLFSQDQNSGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHFPSG 852

Query: 704  QCVRFPISAIRVFAGRNSVGVRGISLAKGDQV-----ISMAIVLHADADYDERICYMKHM 758
               + P+  +R++  +    +  +     D +        ++ +  +          K  
Sbjct: 853  HLYKNPLIRLRLWNNKELKPIFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHRGKTR 912

Query: 759  SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                +L   D     ++    S   N ++E C+      + +L +SE G  K     + +
Sbjct: 913  KKLIKLKENDKVTCGAILESLSNVENDAKEICRFENYDNRHLLLLSEHGRAKLLHISELQ 972

Query: 819  ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            +    G G   T  S     G L A   V+ +D I+LVS  G L R     + +ASR
Sbjct: 973  LRRHGGYGYNITRQSSSTIEG-LYAATVVDTDDDILLVSKDGLLARKDPFTLPVASR 1028


>gi|145308239|gb|ABP57383.1| gyrase A [Brucella abortus]
          Length = 284

 Score =  467 bits (1201), Expect = e-129,   Method: Composition-based stats.
 Identities = 199/283 (70%), Positives = 239/283 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL  M +M + +N+ Y K A + GEVMGKYHPHG+A+IY
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+S+R  LI+GQGNFGS+DGDPPAA RYTECRL+K    LL D+ KDTV+F+
Sbjct: 61  DALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDG  QEPVVL AR+PN+LVNG GGIAVGMATNIP HNLGEV+DGCVA+IDNP I+L 
Sbjct: 121 DNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELS 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPTG +ILGR GI +AY TGRGS+++RG + IE   GDRE I++TEIPYQ
Sbjct: 181 ELMELIPGPDFPTGGIILGRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           VNKA+M+EK+AELVR+KRI  I+DLRDESDR+GYRVV+ELKR 
Sbjct: 241 VNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRD 283


>gi|806907|gb|AAC43991.1| PAR-C [Mycoplasma genitalium]
          Length = 479

 Score =  466 bits (1200), Expect = e-129,   Method: Composition-based stats.
 Identities = 170/507 (33%), Positives = 272/507 (53%), Gaps = 29/507 (5%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           +++   +   +I +    S+  YA  +I  RA+PDLRDGLKPV RRIL+GM QMG++   
Sbjct: 2   DQKNNNLFQKAIEEVFAVSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMFQMGLKPTT 61

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR  GE+MGKYHPHG+++IYDA+ RM+Q W      +   GN GSVDGD  AA R
Sbjct: 62  PYKKSARAVGEIMGKYHPHGDSSIYDAIIRMSQSWKNNWTTVSIHGNNGSVDGDNAAAMR 121

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL      LL D+ K  V F  N+D S +EP VL    PN+ +NG  GIA G ATN
Sbjct: 122 YTETRLSLYGFELLKDIDKKLVSFINNFDDSEKEPTVLPTLLPNLFINGASGIAAGYATN 181

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E++D     ID P+ +L  +++I++GPDFPTG  +     + + Y  G+G  +
Sbjct: 182 IAPHNTNELLDSLCLRIDQPNCELKQILKIVKGPDFPTGGNVYFEKSLSDIYQAGKGKFI 241

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           I+      + + +  QI +T+I Y+  KA ++++I E++ + ++  I  + D SDR G R
Sbjct: 242 IQAKY---EVNKNLNQIEITQIRYETLKANIVKQIEEIIFDNKLSAIESVIDSSDRNGIR 298

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I+ K    A+ I+  L+++T LQ  F++N   +    P +  L+  L  F+ F  E++
Sbjct: 299 IIIKHKDFLPAEKIMAFLFKHTQLQVNFNLNNTVIANRFPIQIGLLSYLDHFLKFCHELI 358

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
           + + KY L  A  R  +++GL  A++ +D+++++IR + +   AR +L+           
Sbjct: 359 INKAKYELELASKRLEIILGLIKAISIIDKIIKLIRSAVDKSDAREKLI----------- 407

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               +  Q  AI+ LRL +LT     ++  E N L   +     
Sbjct: 408 ---------------DNFKFTFNQAEAIVSLRLYQLTNTDIFELNQEQNELEKTVISSEQ 452

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPR 516
           +++S      ++K++    K +    R
Sbjct: 453 LIASEKARNKLLKKQFEGYKKQFHQQR 479


>gi|46019112|emb|CAE52020.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  466 bits (1199), Expect = e-129,   Method: Composition-based stats.
 Identities = 180/293 (61%), Positives = 236/293 (80%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 293


>gi|46019128|emb|CAE52028.1| gyrase subunit A [Bacillus subtilis]
 gi|46019130|emb|CAE52029.1| gyrase subunit A [Bacillus subtilis]
          Length = 293

 Score =  466 bits (1198), Expect = e-128,   Method: Composition-based stats.
 Identities = 179/293 (61%), Positives = 236/293 (80%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++
Sbjct: 1   VSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NY
Sbjct: 61  VRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LM
Sbjct: 121 DGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELM 180

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
           E+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNK
Sbjct: 181 EVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNK 240

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
           A ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ 
Sbjct: 241 AKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 293


>gi|295102725|emb|CBL00270.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii L2-6]
          Length = 749

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 213/771 (27%), Positives = 361/771 (46%), Gaps = 56/771 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    + 
Sbjct: 25  NAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLIKGART 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG   S D    AA
Sbjct: 84  -KSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAA 141

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L+     L  D+ K+TVDF PNYDG+  EP +L   +P +L N   GIAVGMA
Sbjct: 142 -RYTEAKLEGVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
            NI + NL E+ +  +A++ +   D+   M     PDF  G  IL     +++ +  GRG
Sbjct: 201 CNICSFNLAELCNTTIALMKDAKHDISTTM---PAPDFVGGGQILYDEAQMRDIFENGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R              I +T+IP      A+++KIAELV+  +I +I+D+RDE+D  
Sbjct: 258 SVKVRARYAAV---PGENMIEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLN 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  IL+ + AFR 
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILQEWTAFRM 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RRT Y L+    R H+L GLA  + ++D+ + IIR +                   
Sbjct: 375 ECVRRRTYYDLHGKEKRLHLLKGLAAILMDIDKAIHIIRTTE------------------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                   +++           + EVQ   + E++L  L          E+  L  +I +
Sbjct: 417 --------EETEVVPNLMIGFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEADIAD 468

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVS 543
             DIL+  +R+  II +EL  V  +   PRR+ I+          +E+ +    + V  +
Sbjct: 469 LNDILAKPARIRKIIMKELADVAKKYGQPRRSEILYDLPEEEGGAEEEAVPDYPVTVFFT 528

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY+K++P    R             +++ D +        +   LFF+    VYK ++
Sbjct: 529 REGYLKKIPPQSLRTAGAH-------KLKEGDEIVRQVETRNNVEALFFTDKQQVYKVRL 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L  G     G  L   L +++GE I  ++   +      + Y++F    G   +  LS
Sbjct: 582 AELEDGKVAQMGIYLPGRLGMDEGENILDMVITSDY-----SGYMLFFFAGGRCAKIPLS 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+      ++ + ++    +E ++ + T  G+ +    + I     R+S G
Sbjct: 637 SYATKQNRRKLLKAYCDKEPLATLFFLPEETELAIRTSAGRMLLVGTAQIAAKTTRDSQG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           V  ++L K   + S+      +     R       +    + + D  E  +
Sbjct: 697 VAVVTLKKNQTIASVVPADTLELANPHRYRVRSLPATGALVRAEDEGEQMT 747



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 66/201 (32%), Gaps = 17/201 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             T+ G      +  I   + R +       L +GD+++  +    + +A +      + 
Sbjct: 526 FFTREGY-----LKKIPPQSLRTAG---AHKLKEGDEIVRQVETRNNVEALFFTDKQQVY 577

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +           +    L     ++   +            ++L     G   +     
Sbjct: 578 KVRLAELEDGKVAQMGIYLPGRLGMDEGENILDMVITSDYSGYMLFFFAGGRCAKIPLSS 637

Query: 817 F-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IAS 874
           +    NR         +    +   L  +F + +  ++ + +  G ++ V   +I    +
Sbjct: 638 YATKQNRRKL------LKAYCDKEPLATLFFLPEETELAIRTSAGRMLLVGTAQIAAKTT 691

Query: 875 RATKGVVIFSTAKDERVVSVE 895
           R ++GV + +  K++ + SV 
Sbjct: 692 RDSQGVAVVTLKKNQTIASVV 712


>gi|28916610|gb|AAO59538.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 182/308 (59%), Positives = 244/308 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+ RA+P++RD LKP HRRIL+ M  +G+  +K Y K ARI GEV+G YHPHG++A+YD+
Sbjct: 1   IVSRALPEVRDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD++ R +L++G GNFGSVDGD  AA RYTE  + K +  +L D+ KDT+D++ N
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EPVV+ +R+PN+LVNG  GIAVGMA NIP H LGE++DG +AV +NPDI +  L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMAPNIPPHQLGEIIDGVLAVSENPDITIPEL 180

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVN
Sbjct: 181 MEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ 
Sbjct: 241 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 300

Query: 337 FSVNMVAL 344
           F +N++AL
Sbjct: 301 FGINLLAL 308


>gi|28916590|gb|AAO59528.1| gyrase A [Bacillus subtilis]
          Length = 310

 Score =  465 bits (1197), Expect = e-128,   Method: Composition-based stats.
 Identities = 181/310 (58%), Positives = 244/310 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+P++RDGLKP HRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPEVRDGLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE  + K +  +L D+ KDT+D++
Sbjct: 61  DSMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAGMSKISMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
             YDGS +EPVV+ +R+PN+L NG  GIA GMA NIP H LGE++DG +AV +NPDI + 
Sbjct: 121 DXYDGSEREPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQ
Sbjct: 181 ELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQ 240

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ
Sbjct: 241 VNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQ 300

Query: 335 SLFSVNMVAL 344
           + F +N++AL
Sbjct: 301 TSFGINLLAL 310


>gi|28916596|gb|AAO59531.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 308

 Score =  465 bits (1196), Expect = e-128,   Method: Composition-based stats.
 Identities = 182/308 (59%), Positives = 244/308 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+ RA+PD+ D LKP HRRIL+ M  +G+  +K Y K ARI GEV+G YHPHG++A+YD+
Sbjct: 1   IVSRALPDVPDDLKPAHRRILYAMNDLGMTSDKPYKKSARIVGEVIGNYHPHGDSAVYDS 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD++ R +L++G GNFGSVDGD   A RYTE R+ K +  +L D+ KDT+D++ N
Sbjct: 61  MVRMAQDFNYRYMLVDGHGNFGSVDGDSAVAMRYTEARMSKISMEILRDITKDTIDYQDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           YDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H +GE++DG +AV +NPDI +  L
Sbjct: 121 YDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQVGEIIDGVLAVSENPDIPIPEL 180

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           ME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVN
Sbjct: 181 MEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVN 240

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           KA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ 
Sbjct: 241 KAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTS 300

Query: 337 FSVNMVAL 344
           F +N++AL
Sbjct: 301 FGINLLAL 308


>gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
 gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
           Topo Iv (Pare-Parc Fusion Truncate)
          Length = 767

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 196/542 (36%), Positives = 299/542 (55%), Gaps = 43/542 (7%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E  ++          + S+ +  + +YL YA+ VI+ RA+P + DGLKPV RRI++ M +
Sbjct: 260 EDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSE 319

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D 
Sbjct: 320 LGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD- 378

Query: 123 DPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DP   AA R TE +L   +  LL +LG+ T +++ N+DGS +EP+ L AR PN+L+NG  
Sbjct: 379 DPKSFAAMRXTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTT 438

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKN 239
           GIAVGMAT+IP HNL EVV G +A+I NP    + L E I  PD PT   +I     +  
Sbjct: 439 GIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLK 498

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
              TGRGS  +R V  IEK       IV+TE+PYQV+ + ++ +IA+ ++ K++  + D+
Sbjct: 499 IQTTGRGSYRMRAVYTIEKNE-----IVITELPYQVSGSKVITQIADQMQAKKLPLVVDV 553

Query: 300 RDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIG 356
           RDESD +   R+VI L+     A+ +++ L+  T L+S + VN+  +    +P+  ++  
Sbjct: 554 RDESDHENPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRR 613

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++  R++ V RR +Y LN+   R H+L GL IA  ++D V+RIIR    P+     
Sbjct: 614 ILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPK----- 668

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                                           + E+Q  AILEL+L  L  L   +IR+E
Sbjct: 669 ------------------------PVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHE 704

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIV 534
            + L  +     + L +   L  +I  EL     +    RR+ IV       ++++D + 
Sbjct: 705 QDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMP 764

Query: 535 RE 536
            E
Sbjct: 765 AE 766


>gi|167749706|ref|ZP_02421833.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
 gi|167657329|gb|EDS01459.1| hypothetical protein EUBSIR_00664 [Eubacterium siraeum DSM 15702]
          Length = 743

 Score =  464 bits (1193), Expect = e-128,   Method: Composition-based stats.
 Identities = 214/721 (29%), Positives = 362/721 (50%), Gaps = 55/721 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           + +  ITD +  +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    +  K A
Sbjct: 27  VENQPITDTLTENYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMGLLTGART-KSA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERYT 131
            I G+ M K +PHG+ AIY+ + R+A+ + +L    ++ +GNFG   S D    AA RYT
Sbjct: 85  NIVGQTM-KLNPHGDMAIYETMVRLARGNEALLHPYVDSKGNFGKAYSRDM-SFAASRYT 142

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L      +  D+ +D VDF PNYD S  EPV+L  R+P VLVN   GIAV MA+NI 
Sbjct: 143 EAKLDPICAEIFADIDRDIVDFVPNYDNSMTEPVLLPTRFPAVLVNNNVGIAVSMASNIC 202

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGRGSIVI 250
           + NL EV +   A++ N + D+ + +   +GPDFP G  I      ++  YATGRGS+ +
Sbjct: 203 SFNLSEVCETAAALMKNLEHDIVSTL---KGPDFPGGGFILQDENELRRIYATGRGSVKV 259

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R     +KT+     I VTEIP      A+++KI E V+  ++ +I+D+RDESD  G ++
Sbjct: 260 RSKYIYDKTA---NCIEVTEIPPTTTIEAIIDKIVEQVKLGKLKEISDVRDESDLSGLKI 316

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKRG  ++ ++ +L+R T LQ +FS N   L G  P+   +  IL+ +  FR   V 
Sbjct: 317 TIDLKRGQDSEAVMKKLFRITPLQDVFSCNFNILVGGMPKVMGVAEILEQWTDFRITCVK 376

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+TK+ L + +++ H+L GL   + ++D+ ++IIR + +                     
Sbjct: 377 RKTKFELARKKEKLHLLTGLKKILLDIDKAIKIIRETED--------------------- 415

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                D+           + E Q   + +++L  +          E++SL  EI +  DI
Sbjct: 416 -----DAEVVPNLMIGFGIDETQAEYVADIKLRNINKGYILKRIEEIDSLKEEIADMEDI 470

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSHLGYV 548
           LSS  R+  II  EL  +  +   PR+T  +      + E E+ I    + +  +  GY 
Sbjct: 471 LSSERRVKQIIISELGDIAKKYGKPRKTMFIYGTEDEENEAEEEIPDYPVNLFFTREGYF 530

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++     R             +++ D + + +  S    +LFF+    VYK +      
Sbjct: 531 KKITPQSLRMSGEQ-------KLKENDEIIETYDGSNRAELLFFTDKFQVYKARACDFED 583

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
           G     G  L   L L+  ERI  ++   +      +  +V   ++G   +  ++ F   
Sbjct: 584 GKASVMGDYLPVKLELDPDERIIKMIAAEDY-----SGTLVMFFENGKCAKVPMASFETK 638

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            R  K+A   +    ++S+     + + +L+++ G+ + F    I   A R++ GV+ + 
Sbjct: 639 TRRKKLANAYNDGSPLVSMTLIDGDCEFMLSSEAGKVMIFNTVLILPKAARDTQGVQVMR 698

Query: 729 L 729
           L
Sbjct: 699 L 699



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 19/192 (9%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             T+ G   +    ++R  +G          L + D++I       ++            
Sbjct: 523 FFTREGYFKKITPQSLR-MSGEQ-------KLKENDEII--ETYDGSNRAELLFFTDKFQ 572

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF---ILTVSEKGFGKRTSS 814
           +   R     D +                +ER  ++   E +   ++   E G   +   
Sbjct: 573 VYKARACDFEDGKASVMGDYLPVKLELDPDERIIKMIAAEDYSGTLVMFFENGKCAKVPM 632

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEI-RIA 873
             F    R  K       +  N+   LV++  ++ + + +L S+ G ++      I   A
Sbjct: 633 ASFETKTRRKK-----LANAYNDGSPLVSMTLIDGDCEFMLSSEAGKVMIFNTVLILPKA 687

Query: 874 SRATKGVVIFST 885
           +R T+GV +   
Sbjct: 688 ARDTQGVQVMRL 699


>gi|325068644|ref|ZP_08127317.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 373

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 176/374 (47%), Positives = 243/374 (64%), Gaps = 3/374 (0%)

Query: 1   MTEH-IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M +     +    +  I  + ++ EM+ S+L YA +VI  RA+PD RDGLKPV RRILF 
Sbjct: 1   MPKSATTRTPPPTDGEIVDLDLSTEMRTSFLEYAYSVIYARALPDARDGLKPVQRRILFQ 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +MG+  ++ +VK +R+ G+VMG+ HPHG+ AIY+AL R+AQ +++RL LI+G GNFGS
Sbjct: 61  MDRMGLRPDRPHVKSSRVVGDVMGRLHPHGDTAIYEALVRLAQPFTMRLPLIDGHGNFGS 120

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           +D D PAA RYTE RL  +A  L  DL +DTVDF PNYD +  EP VL A +PN+LVNG 
Sbjct: 121 LD-DGPAAPRYTEARLAASALALTADLDEDTVDFAPNYDYTLTEPEVLPAAFPNLLVNGA 179

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATN+P HNL EVV     ++ +P+  L+ LM  + GPD P G +I+G  GI+ 
Sbjct: 180 AGIAVGMATNMPPHNLVEVVAAARHLLTHPEATLEELMAFVPGPDLPAGGMIVGLDGIRE 239

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY TGRG  + R  +H+E  S  R+ IVVTE+PY V    ++ +I E V  K++  I D+
Sbjct: 240 AYRTGRGKFLTRATAHVESVSPRRKGIVVTELPYMVGPEKVIARIKEAVGSKKLQGITDV 299

Query: 300 RDESDR-QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            D +DR  G R+VI +K G + + +L QLY++T L+  F +N V+L   +P    L  +L
Sbjct: 300 ADLTDRKHGTRLVISVKNGYNPEAVLAQLYKHTPLEDSFGINNVSLVDGQPHTLGLRELL 359

Query: 359 KAFVAFREEVVVRR 372
           + FV  R  VV RR
Sbjct: 360 EVFVRHRLTVVTRR 373


>gi|256005840|ref|ZP_05430790.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|255990204|gb|EEU00336.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           2360]
 gi|316940937|gb|ADU74971.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum DSM
           1313]
          Length = 727

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 216/728 (29%), Positives = 369/728 (50%), Gaps = 55/728 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K 
Sbjct: 2   STNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEKT 60

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A + G+ M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG   S D    AA
Sbjct: 61  -KSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK-YAA 117

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMA 177

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRG 246
           ++I + NL EV +  V  I +   +   L+ I++ PDFPTG  ++     ++  Y  GRG
Sbjct: 178 SSICSFNLVEVCNAAVEFIKD---ENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGRG 234

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +  +R     +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  
Sbjct: 235 TFKLRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLN 291

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ +++KR A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR 
Sbjct: 292 GLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRM 351

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + R+T Y ++K   + H+L+GL   + ++D+ ++IIR +         LM+       
Sbjct: 352 DCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLME------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + + Q   + E++L  L         +E+ SL  EI E
Sbjct: 405 -------------------GFGIDQAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAE 445

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV--VTVSH 544
             ++  S  ++  +I ++L  +  +   PRRT IV      E     + ED    + ++ 
Sbjct: 446 LNELYGSEKKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTK 505

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+K++PL+  R             +++ DF+           +L FS+   VYK K++
Sbjct: 506 QNYLKKIPLTSLRTSPEH-------KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIY 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +      + G+ L N+LSL +GE I  ++   +        Y++F  ++G V +  L  
Sbjct: 559 EIEDCKASSLGEFLSNVLSLEEGEEIIHMVATDDY-----KGYMIFGFENGKVAKIVLES 613

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +       K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV
Sbjct: 614 YATKTNRKKLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGV 673

Query: 725 RGISLAKG 732
           + +   KG
Sbjct: 674 QVLKSKKG 681



 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 9/180 (5%)

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L +GD ++  +     AD         +  M          +     L N  S+E    
Sbjct: 524 KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEE 583

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVF 845
                     + +++   E G   +     +   +NR          +  N +  LV + 
Sbjct: 584 IIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKL------ANAYNGLSRLVYIG 637

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + ++++++  S    ++    + I    +R ++GV +  + K   +  +++I E    D
Sbjct: 638 HILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSVMTHIKKISEVSFTD 697


>gi|145633278|ref|ZP_01789009.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986124|gb|EDJ92714.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 620

 Score =  463 bits (1190), Expect = e-128,   Method: Composition-based stats.
 Identities = 261/647 (40%), Positives = 388/647 (59%), Gaps = 36/647 (5%)

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           ++E+PYQVNKA ++EKIAEL+REK+I  I+++ D S+++G R+ I++KR A  +V+LN L
Sbjct: 1   MSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEVVLNHL 60

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           Y  T +Q  F +NMVAL+  +P  F L  I++AFV  R EVV RR+ + L KAR+R H+L
Sbjct: 61  YSLTQMQVTFGINMVALDHGQPRLFNLKEIIEAFVLHRREVVTRRSIFELRKARERTHIL 120

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID---LIDDSSYTIGS 443
            GLA+A +N+DE++ IIR S N E A   +  RSW   SDI +L+D     DD    +G 
Sbjct: 121 EGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWALHSDIINLLDVSARPDDLEENLGI 180

Query: 444 DGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  RL+ +I+
Sbjct: 181 QGEQYYLSPAQVNAILELRLHRLTGIAFEEVVKEYKELLVKIADLLHILSSAERLMEVIR 240

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 241 EELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRG 300

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++NIL
Sbjct: 301 GKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRPIVNIL 360

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L + ERIT I+P    E    + +V+ AT  G V++  L++F +   +G IA+ L   D
Sbjct: 361 PLQENERITAILPVSAYE---EDKFVIMATADGIVKKIALTEFSRPRSNGIIALNLRDED 417

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI LA            
Sbjct: 418 ELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA------------ 464

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
                                  + + EEI+    +++++ NI +     +   E  ILT
Sbjct: 465 -------------LTNDISDDESAVEIEEISDDNAETALDLNIDKVVSLVVPKSEGAILT 511

Query: 803 VSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
            ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V + DQI+L++D GTL
Sbjct: 512 ATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLITDAGTL 569

Query: 863 IRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +R  V+E+ I  R T+GV +  TA DE VVS+ER+ +++  D  E +
Sbjct: 570 VRTRVSEVGIVGRNTQGVRLIRTADDEHVVSLERVCDADEEDSLEES 616


>gi|281417026|ref|ZP_06248046.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
 gi|281408428|gb|EFB38686.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium thermocellum JW20]
          Length = 727

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/728 (29%), Positives = 369/728 (50%), Gaps = 55/728 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K 
Sbjct: 2   STNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEKT 60

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A + G+ M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG   S D    AA
Sbjct: 61  -KSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK-YAA 117

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMA 177

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRG 246
           ++I + NL EV +  V  I +   +   L+ I++ PDFPTG  ++     ++  Y  GRG
Sbjct: 178 SSICSFNLVEVCNAAVEFIKD---ENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGRG 234

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           +  +R     +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  
Sbjct: 235 TFKLRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLN 291

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ +++KR A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR 
Sbjct: 292 GLKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRM 351

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + R+T Y ++K   + H+L+GL   + ++D+ ++IIR +         LM+       
Sbjct: 352 DCIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMK------- 404

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 + + Q   + E++L  L         +E+ SL  EI E
Sbjct: 405 -------------------GFGIDQAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAE 445

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV--VTVSH 544
             ++  S  ++  +I ++L  +  +   PRRT IV      E     + ED    + ++ 
Sbjct: 446 LNELYGSEKKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTK 505

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+K++PL+  R             +++ DF+           +L FS+   VYK K++
Sbjct: 506 QNYLKKIPLTSLRTSPEH-------KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIY 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +      + G+ L N+LSL +GE I  ++   +        Y++F  ++G V +  L  
Sbjct: 559 EIEDCKASSLGEFLSNVLSLEEGEEIIHMVATDDY-----KGYMIFGFENGKVAKIVLES 613

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +       K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV
Sbjct: 614 YATKTNRKKLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGV 673

Query: 725 RGISLAKG 732
           + +   KG
Sbjct: 674 QVLKSKKG 681



 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 9/180 (5%)

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L +GD ++  +     AD         +  M          +     L N  S+E    
Sbjct: 524 KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEE 583

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVF 845
                     + +++   E G   +     +   +NR          +  N +  LV + 
Sbjct: 584 IIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKL------ANAYNGLSRLVYIG 637

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + ++++++  S    ++    + I    +R ++GV +  + K   +  +++I E    D
Sbjct: 638 HILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSVMTHIKKISEVSFTD 697


>gi|125972827|ref|YP_001036737.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
 gi|125713052|gb|ABN51544.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium thermocellum
           ATCC 27405]
          Length = 727

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 216/727 (29%), Positives = 369/727 (50%), Gaps = 55/727 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+   +K  
Sbjct: 3   TNNLIEQRIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGEKT- 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAE 128
           K A + G+ M K +PHG+ AIY+ L R+ + + +L L  ++ +GNFG   S D    AA 
Sbjct: 61  KSANVVGQTM-KLNPHGDMAIYETLVRLTRGNGALLLPYVDSKGNFGKHYSRDMK-YAAP 118

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K    L  D+ KDTVDF  NYDG+ +EP +L A +P +LVN   GIAVGMA+
Sbjct: 119 RYTEVKLDKICEELFKDIDKDTVDFVDNYDGTMKEPKLLPATFPTILVNANHGIAVGMAS 178

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGS 247
           +I + NL EV +  V  I +   +   L+ I++ PDFPTG  ++     ++  Y  GRG+
Sbjct: 179 SICSFNLVEVCNAAVEFIKD---ENTDLVGILKAPDFPTGGQLIYNEREMREIYEKGRGT 235

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R     +K +     I + EIPY     A+++ IA+LV+  +I DI+D+RDE+D  G
Sbjct: 236 FKLRAKYRYDKANS---CIEIYEIPYTTTVEAIIDSIADLVKSNKIRDISDVRDETDLNG 292

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++ +++KR A  D ++N+LY+ T L+  FS N   L   +P    + GILK +V FR +
Sbjct: 293 LKIALDIKRNADPDTLMNKLYKLTPLEDSFSCNFNILINGRPMVMGVRGILKEWVNFRMD 352

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+T Y ++K   + H+L+GL   + ++D+ ++IIR +         LM+        
Sbjct: 353 CIKRQTLYDIDKKTQKLHILLGLEKILLDIDKAIKIIRNTEEEAMVVPNLMK-------- 404

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + + Q   + E++L  L         +E+ SL  EI E 
Sbjct: 405 ------------------GFGIDQAQAEFVAEIKLRNLNKEYILKRVSEIESLKKEIAEL 446

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV--VTVSHL 545
            ++  S  ++  +I ++L  +  +   PRRT IV      E     + ED    + ++  
Sbjct: 447 NELYGSEKKIKKLIIKQLEEIAKKYGQPRRTEIVMEEHIEEITHEHLIEDYNLKLFLTKQ 506

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K++PL+  R             +++ DF+           +L FS+   VYK K++ 
Sbjct: 507 NYLKKIPLTSLRTSPEH-------KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYE 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +      + G+ L N+LSL +GE I  ++   +        Y++F  ++G V +  L  +
Sbjct: 560 IEDCKASSLGEFLSNVLSLEEGEEIIHMVATDDY-----KGYMIFGFENGKVAKIVLESY 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                  K+A   +    ++ +    ++ +++  + L + + F  S I     R+S GV+
Sbjct: 615 ATKTNRKKLANAYNGLSRLVYIGHILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQ 674

Query: 726 GISLAKG 732
            +   KG
Sbjct: 675 VLKSKKG 681



 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 9/180 (5%)

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L +GD ++  +     AD         +  M          +     L N  S+E    
Sbjct: 524 KLKEGDFIVQELETHNKADLLLFSNRQNVYKMKIYEIEDCKASSLGEFLSNVLSLEEGEE 583

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVF 845
                     + +++   E G   +     +   +NR          +  N +  LV + 
Sbjct: 584 IIHMVATDDYKGYMIFGFENGKVAKIVLESYATKTNRKKL------ANAYNGLSRLVYIG 637

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + ++++++  S    ++    + I    +R ++GV +  + K   +  +++I E    D
Sbjct: 638 HILEDEELVAFSSLNKVLIFNTSNINPKTTRDSQGVQVLKSKKGSVMTHIKKISEVSFTD 697


>gi|256376407|ref|YP_003100067.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
 gi|255920710|gb|ACU36221.1| DNA topoisomerase (ATP-hydrolyzing) [Actinosynnema mirum DSM 43827]
          Length = 1143

 Score =  462 bits (1189), Expect = e-127,   Method: Composition-based stats.
 Identities = 253/811 (31%), Positives = 366/811 (45%), Gaps = 115/811 (14%)

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
            +    MGKYHPHG+ AIYDA+ R+AQD+SL   LI+G GNFGS D D PAA RYTE R+ 
Sbjct: 401  VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPD-DGPAASRYTEARMS 459

Query: 137  KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             AA  L+ +L +DTV+FRPNYDGS  EP VL A +PN+LVNG  GIAVGMATN+  HNLG
Sbjct: 460  GAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNLG 519

Query: 197  EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH- 255
            EVV     ++ +PD DL+ LME I GPD PTG ++LG   ++ AY TGRG + +R     
Sbjct: 520  EVVAAARHLVKHPDADLEKLMEFIPGPDLPTGGMLLGLDEVRKAYETGRGVVRMRATVTT 579

Query: 256  -IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE-KRIVDIADLRDESDR-QGYRVVI 312
               + S  R+ I VTE+PY V    ++EKI + V + KR+  IAD++D +DR  G R+VI
Sbjct: 580  GPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRLVI 639

Query: 313  ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            E K G +   +L  LYR T L+  F +N + L   +P+   L  +L+ F+A R EVV RR
Sbjct: 640  ECKVGVNPQALLADLYRLTPLEQSFGINNLVLVDGQPQTLGLKALLEVFLAHRYEVVTRR 699

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            T++   K  DR H++ GL  A+ ++D+V+++IR S N + A+  L+              
Sbjct: 700  TRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVS------------- 746

Query: 433  LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                         T  LSE Q   IL+  L RLT     ++  E   L  EI E   IL 
Sbjct: 747  -------------TFALSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILD 793

Query: 493  SRSRLLGIIKQELLSVKDELDTPRRTRIVEGL-------LDMEDEDCIVREDMVVTVSHL 545
                L  ++  EL  V  +L   RRT +++G                +  +   V +S  
Sbjct: 794  DDKVLRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSAT 853

Query: 546  GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK---EK 602
            G V R       A     +GR        D V      +    VL  +S G  +K     
Sbjct: 854  GLVARTAAESEEAV----EGRKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLP 909

Query: 603  VWRLPIGSPQARGK---ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
            +  LP G           +  ++ L  GER+  I P  E     ++  +   TK G V+ 
Sbjct: 910  LPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGE----TDSPGLALGTKQGVVKV 965

Query: 660  NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFPISAIRVFAG 718
                  +         + L + DE++  +      + ++  +     +R+  S +R   G
Sbjct: 966  CAPEWPV--RSDEFEVIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYAASLVRP-QG 1022

Query: 719  RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
                G+ GI+L     V+    V   DA++ E +                          
Sbjct: 1023 LRGGGMAGITLPGEASVVFFGAVRTDDAEHGEPV-------------------------- 1056

Query: 779  SSVEGNISEERCQELKLKEQFILTVSEKG-FGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                                    V+  G   K T    +    R+  G+RA    K  +
Sbjct: 1057 -----------------------VVTSTGQSVKVTPFDLYPAKGRATGGVRAHRFLKGED 1093

Query: 838  IGAL--VAVFPVNDNDQIILVSDKGTLIRVP 866
               L  V   P         V++ G  + +P
Sbjct: 1094 GLVLAWVGARPA-------AVTESGAAVELP 1117



 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/79 (44%), Positives = 48/79 (60%)

Query: 2  TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
          T    S+ +     +   S+T E+++SYL YA +VI  RA+PD RDGLKPVHRRILF M 
Sbjct: 9  TRVDPSAFDSAGAKVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMN 68

Query: 62 QMGVEWNKKYVKCARISGE 80
          +        YVK +R+ G+
Sbjct: 69 EQNHRPTSPYVKSSRVVGD 87



 Score = 46.3 bits (108), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 95/270 (35%), Gaps = 28/270 (10%)

Query: 644  NNLYVVFATKHGNVRRN--KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
            ++   V  +  G V R   +  + ++  +    A      D + +    T    +LL T 
Sbjct: 843  DDPCQVVLSATGLVARTAAESEEAVEGRKRSGRA----KHDAVAATVHTTARGQVLLVTS 898

Query: 702  LGQCVRFPISAIRVF-AGRN----SVGV---RGISLAKGDQVISMAIVLHADADYDERIC 753
             G+  +  +  + V   G      S GV     + L  G++V+ +A +   D+       
Sbjct: 899  RGRAFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGETDSPGLA--- 955

Query: 754  YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             +       ++ + +    +       ++        Q L   ++ ++ VS +    R +
Sbjct: 956  -LGTKQGVVKVCAPEWPVRSDEFEVIGLKAGDEVVGAQWLADGQEALVFVSSEASLLRYA 1014

Query: 814  SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIR-VPVN 868
            +   R     G G+    +       ++V    V  +D    + ++V+  G  ++  P +
Sbjct: 1015 ASLVRPQGLRGGGMAGITLP---GEASVVFFGAVRTDDAEHGEPVVVTSTGQSVKVTPFD 1071

Query: 869  EIRIASRATKGVVIFS-TAKDERVVSVERI 897
                  RAT GV        ++ +V +  +
Sbjct: 1072 LYPAKGRATGGVRAHRFLKGEDGLV-LAWV 1100



 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 20/176 (11%)

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           I+    +  D     R+   +     + L +     +        +  + +    +    
Sbjct: 785 IAELSTILDDDKVLRRVVSNELGKVAKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADD 844

Query: 796 KEQFILTVSEKGFGKRTSS-YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             Q +L+ +  G   RT++  +  +  R   G          +  A+ A        Q++
Sbjct: 845 PCQVVLSAT--GLVARTAAESEEAVEGRKRSG--------RAKHDAVAATVHTTARGQVL 894

Query: 855 LVSDKGTLIRVPVNEIRI--ASRAT---KG---VV-IFSTAKDERVVSVERIRESE 901
           LV+ +G   +  V  + +      T    G   V  +      ERVV +  + E++
Sbjct: 895 LVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLEAGERVVGIAPLGETD 950


>gi|313115470|ref|ZP_07800935.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622180|gb|EFQ05670.1| DNA gyrase/topoisomerase IV, A subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 749

 Score =  462 bits (1188), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/772 (27%), Positives = 360/772 (46%), Gaps = 56/772 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    + 
Sbjct: 25  NAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG   S D    AA
Sbjct: 84  -KSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAA 141

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L+     L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA
Sbjct: 142 -RYTEAKLEGVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
            NI + NL E+    VA++ +   D+   M     PDF  G  IL     ++  Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDEHHDISTTM---PAPDFVGGGQILYDEAQMREIYENGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R    +         I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  
Sbjct: 258 SVKVRARYSVV---PGENMIEVTQIPPTTTVEAIMDKIAELVKAGKVKEISDMRDETDLN 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR 
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSANFNILVSGQPRVMGVREILKEWTAFRV 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RRT Y L+    R H+L GLA  + ++D+ ++IIR +                   
Sbjct: 375 ECVRRRTYYDLHGKEKRLHLLKGLAAILLDIDKAIKIIRTTE------------------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                   +++           + EVQ   + E++L  L         +E+  L  +I +
Sbjct: 417 --------EETEVVPNLMIGFGIDEVQADYVAEIKLRHLNREYILKRTSEIEQLEKDIAD 468

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVS 543
             DIL+  +R+  II  EL  V  +   PRR+ I+       +  +E+      + V  +
Sbjct: 469 LNDILAKPARIRRIIINELNDVAKKYGQPRRSEILYDLPEDENGSEEEEAPDYPVTVFFT 528

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++P    R             +++ D +        +   LFF+    VYK ++
Sbjct: 529 REGYFKKIPPQGLRTAGAH-------KLKEGDEIVQQIETRNNVEALFFTDKQQVYKVRL 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L  G     G  +   L +++GE + +++   +      + +++F    G   +  LS
Sbjct: 582 AELEDGKVAQMGIFIPGRLGMDEGENVLSMVITSDY-----SGFMLFFFASGKCAKIPLS 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+      ++ +  +    +E ++ + T   + +    + I   A R+S G
Sbjct: 637 SYATKQNRRKLLKAYCDKEPLAKLFFLPEETELAIRTSASRMLLVGTAQIAAKATRDSQG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           V  ++L K   + S+      +     R       +    L + D  E  SL
Sbjct: 697 VAVVTLKKNQTIASVVPADTLELANPHRYRVRSLPATGALLRAEDEGEQMSL 748



 Score = 43.2 bits (100), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 64/201 (31%), Gaps = 17/201 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERICYMK 756
             T+ G         I     R +       L +GD+++  +    + +A +      + 
Sbjct: 526 FFTREGYF-----KKIPPQGLRTAG---AHKLKEGDEIVQQIETRNNVEALFFTDKQQVY 577

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +           +    +     ++   +            F+L     G   +     
Sbjct: 578 KVRLAELEDGKVAQMGIFIPGRLGMDEGENVLSMVITSDYSGFMLFFFASGKCAKIPLSS 637

Query: 817 F-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IAS 874
           +    NR         +    +   L  +F + +  ++ + +    ++ V   +I   A+
Sbjct: 638 YATKQNRRKL------LKAYCDKEPLAKLFFLPEETELAIRTSASRMLLVGTAQIAAKAT 691

Query: 875 RATKGVVIFSTAKDERVVSVE 895
           R ++GV + +  K++ + SV 
Sbjct: 692 RDSQGVAVVTLKKNQTIASVV 712


>gi|160933743|ref|ZP_02081131.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
 gi|156867620|gb|EDO60992.1| hypothetical protein CLOLEP_02604 [Clostridium leptum DSM 753]
          Length = 759

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 215/733 (29%), Positives = 357/733 (48%), Gaps = 55/733 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    +    I   ++ +Y+ YA++VIL RA+P++ DG KP HR++L+ M +MG+  + +
Sbjct: 34  EGAGSVVEQEIDHTLETNYMPYAMSVILSRALPEI-DGFKPSHRKLLYTMYKMGLLNSGR 92

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFG---SVDGDPPA 126
             K A I G+ M K +PHG  AIYD + R+++ + +L    ++ +GNFG   S D    A
Sbjct: 93  T-KSANIVGQTM-KLNPHGEGAIYDTMVRLSRGYEALLHPFVDSKGNFGKFYSRDM-AWA 149

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L   A  L  D+ KDTVDF  NYD + +EP +L A +P VLVN   GIAVGM
Sbjct: 150 ASRYTEAKLDAIAQELFRDIDKDTVDFVDNYDNTMKEPSLLPATFPTVLVNANTGIAVGM 209

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGR 245
           A++I   NL EV +  + +I +PD     +M  +  PDFP G   I  R  +K  YATGR
Sbjct: 210 ASSICPFNLKEVCETTIGLIRDPDF---DVMSTLLAPDFPGGGQIICDRNALKQVYATGR 266

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R     ++++     I VT IP      A++EKI ELV++ ++ +IAD+RDE+  
Sbjct: 267 GGIKVRARYSYDQSA---NCIDVTSIPPTTTCEAIIEKIIELVKQGKLKEIADIRDETGL 323

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G ++ I+LKR    + ++ +L+R T L+  FS N   L    P    +  +L  ++AFR
Sbjct: 324 DGLKITIDLKRSVDPEKLMLKLFRMTPLEDTFSCNFNVLIAGVPRVLGIRELLGEWIAFR 383

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E V RRT + L K +D+ H+L GL   + ++D+ VRI+R +                  
Sbjct: 384 IECVRRRTYFDLQKKKDKLHLLKGLKRILLDIDKAVRIVRETE----------------- 426

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                    ++S           + E+Q   + E++L  L          E   L  EI 
Sbjct: 427 ---------EESEVVPNLMIGFGIDEIQAEFVAEIKLRHLNREYILKRTQETEQLETEIA 477

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVS 543
           E   ++ S+S++ GII  EL  V  +   PR++ +V      + E ED I    + +  +
Sbjct: 478 ELQAVMDSKSKVKGIIVSELNDVIKKYGRPRKSMLVYPGEIQEYEPEDDIPDYPVTLFFT 537

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++     R             +++ED +      + +T +LFF+    VYK + 
Sbjct: 538 KEGYFKKITPQSLRMSGEQ-------KLKEEDSIVQTVEATNNTELLFFTDRCQVYKTRA 590

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                      G  +   L  ++GE    ++   + +       ++F  ++G + +  L 
Sbjct: 591 SEFADTKASVLGDFVAAKLGFDEGESAVAMIVTTDYKGC-----LLFFFENGKLAKVPLD 645

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       ++A     +  +  V    ++ + LLT+  G+ +     A+   A RN+ G
Sbjct: 646 SYATKTNRKRLANAYSEKSPLCRVYHIQEDQEFLLTSSSGRMLLVHTGAVAEKATRNTQG 705

Query: 724 VRGISLAKGDQVI 736
           V  ++  KG +++
Sbjct: 706 VAVMTQRKGHRLL 718



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 79/220 (35%), Gaps = 23/220 (10%)

Query: 690 CTQENDI------LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVL 742
              E+DI      L  TK G   +    ++R  +G          L + D ++ ++    
Sbjct: 521 YEPEDDIPDYPVTLFFTKEGYFKKITPQSLR-MSGEQ-------KLKEEDSIVQTVEATN 572

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           + +  +    C +    A     +  +     +      +   S          +  +L 
Sbjct: 573 NTELLFFTDRCQVYKTRASEFADTKASVLGDFVAAKLGFDEGESAVAMIVTTDYKGCLLF 632

Query: 803 VSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
             E G   +     +   +NR      A   S+ +    L  V+ + ++ + +L S  G 
Sbjct: 633 FFENGKLAKVPLDSYATKTNRKRL---ANAYSEKS---PLCRVYHIQEDQEFLLTSSSGR 686

Query: 862 LIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRES 900
           ++ V    +   A+R T+GV + +  K  R+++VE  +E 
Sbjct: 687 MLLVHTGAVAEKATRNTQGVAVMTQRKGHRLLNVEPFKED 726


>gi|303238190|ref|ZP_07324726.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
 gi|302594236|gb|EFL63948.1| DNA topoisomerase (ATP-hydrolyzing) [Acetivibrio cellulolyticus
           CD2]
          Length = 727

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 220/728 (30%), Positives = 371/728 (50%), Gaps = 55/728 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +  +    I D ++ +Y+ YA++VI+ RAIP++ DGLKP HR++L+ M +MG+    + 
Sbjct: 2   SKSRLIEQKIVDTLEKNYMPYAMSVIVSRAIPEI-DGLKPSHRKLLYTMYKMGLLTGGRT 60

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A + G+ M K +PHG+ AIY+ + R+ + + +L    ++ +GNFG   S D    AA
Sbjct: 61  -KSANVVGQTM-KLNPHGDMAIYETMVRLTRGNDALLHPYVDSKGNFGKQYSRDM-HFAA 117

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L K    L  DL KD VDF  NYDG+ +EP +L   +PN+LV+   GIAVGMA
Sbjct: 118 PRYTEVKLDKICEELFRDLDKDAVDFVDNYDGTMKEPTLLPITFPNILVSANQGIAVGMA 177

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRG 246
           +NI + NL EV +  +  I+N +I++   +   + PDF +G  ++ +   IK  Y TGRG
Sbjct: 178 SNICSFNLNEVCETAIQFINNENIEVSDYL---KAPDFTSGGQLIYKEKDIKEIYNTGRG 234

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +RG    +K +     I + EIPY     A+++ I ELV+  +I DI D+RDE+D  
Sbjct: 235 SFKVRGKYRYDKEN---NCIEIYEIPYTTTTEAIIDSIIELVKNNKIKDILDVRDETDLD 291

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G +V I+++R    D ++N+LY+ T L+  F  N   L   +P+   + GIL  ++ FR 
Sbjct: 292 GLKVTIDIRRNTDPDALMNKLYKLTPLEDSFGCNFNLLINGRPKVLGIKGILANWIEFRV 351

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           + + R+T + +NK  DR H+LVGL   + ++D+ +R+IR +         LM        
Sbjct: 352 DCIKRQTLFDINKKSDRLHLLVGLKKILLDIDKAIRLIRETEEDAMVIPNLM-------- 403

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +  VQ   I E++L  L      D  +E++ L  EI E
Sbjct: 404 ------------------DGFGVDHVQAEFIAEIKLRNLNKEYILDKVSEIDKLEKEIAE 445

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE--GLLDMEDEDCIVREDMVVTVSH 544
             DI  +  ++  II ++L  V  +   PRRT I+    + ++  E  I   ++ + ++ 
Sbjct: 446 LKDIYGNDKKIKKIIVKQLGEVSKKYGKPRRTDILHEEHVEEITQEHFIEDYNLKIFLTD 505

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVW 604
             Y+K++PL+  R             ++D+D +           +L FS+   VYK +++
Sbjct: 506 HNYLKKIPLTSLRTSPEH-------KLKDDDSIVQEIETHNKADLLLFSNKQTVYKIRIY 558

Query: 605 RLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSD 664
            +      + G  L N+L L   ERI  I+   +        Y++FA ++G V +  L  
Sbjct: 559 EIDDCKASSLGDYLTNLLGLEADERIINIVATDDY-----KGYMIFAFENGKVAKIDLES 613

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
           +       K+A       +I+ ++  T++ +++  + L + + F  S I   + R+S GV
Sbjct: 614 YATKTNRKKLANAYSDLSKIIYMQYITEDEELVAFSSLKKVLIFSTSNINPKSTRDSQGV 673

Query: 725 RGISLAKG 732
           + +   KG
Sbjct: 674 QVLKEKKG 681



 Score = 44.0 bits (102), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 61/180 (33%), Gaps = 9/180 (5%)

Query: 728 SLAKGDQVI-SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L   D ++  +     AD         +  +          +     L N   +E +  
Sbjct: 524 KLKDDDSIVQEIETHNKADLLLFSNKQTVYKIRIYEIDDCKASSLGDYLTNLLGLEADER 583

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVF 845
                     + +++   E G   +     +   +NR          +  +++  ++ + 
Sbjct: 584 IINIVATDDYKGYMIFAFENGKVAKIDLESYATKTNRKKL------ANAYSDLSKIIYMQ 637

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIAS-RATKGVVIFSTAKDERVVSVERIRESEIVD 904
            + ++++++  S    ++    + I   S R ++GV +    K   + +V+R+ E    D
Sbjct: 638 YITEDEELVAFSSLKKVLIFSTSNINPKSTRDSQGVQVLKEKKGSVMTTVKRLSEVSFKD 697


>gi|160943135|ref|ZP_02090372.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445604|gb|EDP22607.1| hypothetical protein FAEPRAM212_00615 [Faecalibacterium prausnitzii
           M21/2]
          Length = 749

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 211/772 (27%), Positives = 357/772 (46%), Gaps = 56/772 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    + 
Sbjct: 25  NAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG   S D    AA
Sbjct: 84  -KSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAA 141

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L+     L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA
Sbjct: 142 -RYTEAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
            NI + NL E+    VA++ +   D+   M     PDF  G  I+     ++  Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDEHHDIGTTM---PAPDFVGGGQIVYDEAQMREIYENGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R   +          I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  
Sbjct: 258 SVKVRARYNAV---PGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLN 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR 
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILKEWTAFRI 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RRT Y L+    R H+L GLA  + ++D+ +RIIR +                   
Sbjct: 375 ECVRRRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTE------------------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                   +++           + EVQ   + E++L  L          E+  L  +I +
Sbjct: 417 --------EETEVVPNLMIGFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIAD 468

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVS 543
             D+L+  +R+  II  EL  V  +   PR + I+          +E+ +    + V  +
Sbjct: 469 LNDVLAKPARIRRIIINELNDVAKKYGKPRCSEILYDLPEEDAAAEEEAVPDYPVTVFFT 528

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++P    R             +++ D +        +   LFF+    VYK ++
Sbjct: 529 REGYFKKIPPQSLRTAGAH-------KLKEGDEIIQQLETRNNVEALFFTDKQQVYKVRL 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L  G     G  +   L +++GE + +++   +      + +++F    G   +  LS
Sbjct: 582 AELEDGKVAQMGIFIPGRLGMDEGENVLSMVITGDY-----SGFMLFFFASGKCAKIPLS 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+      ++ +  +    +E ++ + T   + +    + I     R+S G
Sbjct: 637 SYATKQNRRKLLKAYSDKEPLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTTRDSQG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           V  ++L K   + S+      +     R       +    + + D  E  SL
Sbjct: 697 VAVVTLKKNQTIASVVPADTLELANPHRYRVRSLPATGALIRAEDEGEQMSL 748



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 17/201 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERICYMK 756
             T+ G         I   + R +       L +GD++I  +    + +A +      + 
Sbjct: 526 FFTREGYF-----KKIPPQSLRTAG---AHKLKEGDEIIQQLETRNNVEALFFTDKQQVY 577

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +           +    +     ++   +            F+L     G   +     
Sbjct: 578 KVRLAELEDGKVAQMGIFIPGRLGMDEGENVLSMVITGDYSGFMLFFFASGKCAKIPLSS 637

Query: 817 F-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IAS 874
           +    NR  K ++A    +      L  +    +  ++ + +    ++ V   +I    +
Sbjct: 638 YATKQNR-RKLLKAYSDKE-----PLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTT 691

Query: 875 RATKGVVIFSTAKDERVVSVE 895
           R ++GV + +  K++ + SV 
Sbjct: 692 RDSQGVAVVTLKKNQTIASVV 712


>gi|295104659|emb|CBL02203.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Faecalibacterium prausnitzii SL3/3]
          Length = 749

 Score =  461 bits (1187), Expect = e-127,   Method: Composition-based stats.
 Identities = 211/772 (27%), Positives = 357/772 (46%), Gaps = 56/772 (7%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
               +    IT  ++ +Y+ YA++VI+ RA+P++ DG KP HR++L+ M +MG+    + 
Sbjct: 25  NAGSVLEDPITRTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYEMGLLKGART 83

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAA 127
            K A I G  M   +PHG+AAIYD + RM + + SL +  ++ +GNFG   S D    AA
Sbjct: 84  -KSANIVGSTM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAA 141

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L+     L  D+ K+TVDF PNYD +  EP +L   +P +L N   GIAVGMA
Sbjct: 142 -RYTEAKLESVCEELFRDIDKETVDFVPNYDSTTTEPTLLPVTFPTILANNTLGIAVGMA 200

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
            NI + NL E+    VA++ +   D+   M     PDF  G  I+     ++  Y  GRG
Sbjct: 201 CNICSFNLAELCATTVALMKDEHHDIGTTM---PAPDFVGGGQIVYDEAQMREIYENGRG 257

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R   +          I VT+IP      A+++KIAELV+  ++ +I+D+RDE+D  
Sbjct: 258 SVKVRARYNAV---PGENMIEVTQIPPTTTVEAIMDKIAELVKTGKVKEISDMRDETDLN 314

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G ++ ++LKRG  AD ++ +L++ T L+  FS N   L   +P    +  ILK + AFR 
Sbjct: 315 GLKLTLDLKRGVDADKLMAKLFKATPLEDSFSCNFNILVSGQPRVMGVREILKEWTAFRV 374

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E V RRT Y L+    R H+L GLA  + ++D+ +RIIR +                   
Sbjct: 375 ECVRRRTYYDLHGKEKRLHLLQGLAAILLDIDKAIRIIRTTE------------------ 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                   +++           + EVQ   + E++L  L          E+  L  +I +
Sbjct: 417 --------EETEVVPNLMIGFGIDEVQADYVAEIKLRHLNREYILKRTGEIEQLEKDIAD 468

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG---LLDMEDEDCIVREDMVVTVS 543
             D+L+  +R+  II  EL  V  +   PR + I+          +E+ +    + V  +
Sbjct: 469 LNDVLAKPARIRRIIINELNDVAKKYGKPRCSEILYDLPEEDAAAEEEAVPDYPVTVFFT 528

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++P    R             +++ D +        +   LFF+    VYK ++
Sbjct: 529 REGYFKKIPPQSLRTAGAH-------KLKEGDEIIQQLETRNNVEALFFTDKQQVYKVRL 581

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             L  G     G  +   L +++GE + +++   +      + +++F    G   +  LS
Sbjct: 582 AELEDGKVAQMGIFIPGRLGMDEGENVLSMVITGDY-----SGFMLFFFASGKCAKIPLS 636

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+      ++ +  +    +E ++ + T   + +    + I     R+S G
Sbjct: 637 SYATKQNRRKLLKAYSDKEPLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTTRDSQG 696

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           V  ++L K   + S+      +     R       +    + + D  E  SL
Sbjct: 697 VAVVTLKKNQTIASVVPADTLELANPHRYRVRSLPATGALIRTEDEGEQMSL 748



 Score = 42.5 bits (98), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 17/201 (8%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS-MAIVLHADADYDERICYMK 756
             T+ G         I   + R +       L +GD++I  +    + +A +      + 
Sbjct: 526 FFTREGYF-----KKIPPQSLRTAG---AHKLKEGDEIIQQLETRNNVEALFFTDKQQVY 577

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
            +           +    +     ++   +            F+L     G   +     
Sbjct: 578 KVRLAELEDGKVAQMGIFIPGRLGMDEGENVLSMVITGDYSGFMLFFFASGKCAKIPLSS 637

Query: 817 F-RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IAS 874
           +    NR  K ++A    +      L  +    +  ++ + +    ++ V   +I    +
Sbjct: 638 YATKQNR-RKLLKAYSDKE-----PLAMMLYQPEETELAIRTSASRMLLVGTAQIAAKTT 691

Query: 875 RATKGVVIFSTAKDERVVSVE 895
           R ++GV + +  K++ + SV 
Sbjct: 692 RDSQGVAVVTLKKNQTIASVV 712


>gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
 gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1]
          Length = 1441

 Score =  461 bits (1186), Expect = e-127,   Method: Composition-based stats.
 Identities = 214/748 (28%), Positives = 331/748 (44%), Gaps = 80/748 (10%)

Query: 20   SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
                  +  Y +Y + V+  RAIPD+RDG+KPVHRRIL+ M  + +  N K  K AR+ G
Sbjct: 685  PFETVFRELYRSYGLKVVGDRAIPDVRDGMKPVHRRILYAMEMLKLRSNTKTKKSARVVG 744

Query: 80   EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +V+GKYHPHG++A+Y A+ RMAQ W +R  LI+GQGNFGS+DGD  AA RYTE R+   A
Sbjct: 745  DVIGKYHPHGDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSIDGDSAAAMRYTEARMTPIA 804

Query: 140  HFLLD-DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG-IAVGMATNIPTHNLGE 197
              +L  DL      ++PNYD   +EP+VL A +P V++N   G  AVG  T IP+HNL E
Sbjct: 805  EAILSGDLKDGITMYQPNYDDQDKEPMVLPAPFPLVMMNSSTGNPAVGFKTEIPSHNLTE 864

Query: 198  VVDGCVAVIDNPDID--------LDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
            ++  C+A+                  + + I  PDFP G +I      ++  YA G G +
Sbjct: 865  LLGACIALAKKRGRTGAMESPTDFRDVRKHITAPDFPGGGIIANTHEELEAMYAKGYGKM 924

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK------RIVDIADLRDE 302
            ++R   H+E       QIVVTEIPY + K+ +L ++   + +K      ++  I DLRDE
Sbjct: 925  LLRSKWHVETLPKGLWQIVVTEIPYGIEKSPLLIEMGARISDKTIAESRQLPMIDDLRDE 984

Query: 303  SD-RQGYRVVIELK-RGASADVILNQLYRYTSLQSLFSVNMVALN----------GYKPE 350
            S    G R+V+  K R    + I+  L+  T+LQ        AL              P 
Sbjct: 985  SSAEDGIRIVLFPKSRNLDPEQIMLHLFSATNLQVTIQYATYALEKWHDTPNGERYRLPS 1044

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             F L  ++++F+ +R+E+V+ R K  L +   R H+L GL +A  N+ E+V II      
Sbjct: 1045 LFPLDKMIRSFLDYRQELVMSRAKVRLAEITARLHILDGLLLAYPNIREIVEII------ 1098

Query: 411  ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                                   +D+            L+E+QT AIL +RL++L  L +
Sbjct: 1099 -----------------------LDNDEPRPIIMEKYSLTEIQTDAILAIRLSQLRKLEQ 1135

Query: 471  DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT---RIVEGLLDM 527
              ++ E + L  E      +L   +     I  EL     +    RRT           M
Sbjct: 1136 MKLQGEHDRLSEEAAGLHQVLDDDAHRWKHITGELRDALKKFGDERRTIVDPDAPKSRPM 1195

Query: 528  EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
              E  + RE +   +S  G++        +  R      S V  R+ D + D     T  
Sbjct: 1196 SREQIVSREPVTAILSKQGWL--------KGMRGSSIDVSSVRFRESDKLLDSAAGHTTD 1247

Query: 588  SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
             ++     G  +      LP G       +   + S+N+        P        +  Y
Sbjct: 1248 QLILIGRTGRAFSMLAADLPSGRGNGEPVSKHFVFSINEA-------PTRMVMVKPDAEY 1300

Query: 648  VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCV 706
            +V  T  G+  R   SD +  N+ GK  +   +   +L +       +        G+  
Sbjct: 1301 LVATTA-GHAFRAMGSDMVSANKKGKAFINFPASSRLLCIREIEAAHDAFAFIDSYGRMA 1359

Query: 707  RFPISAIRVFAGRNSVGVRGISLAKGDQ 734
                    +       G+  +++ KG +
Sbjct: 1360 VILKDEFPLLG--KGKGLTAVAMKKGSK 1385


>gi|28916616|gb|AAO59541.1| gyrase A [Bacillus subtilis]
          Length = 306

 Score =  461 bits (1185), Expect = e-127,   Method: Composition-based stats.
 Identities = 179/306 (58%), Positives = 242/306 (79%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+P++RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ 
Sbjct: 1   SRALPEVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++  YD
Sbjct: 61  RMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDTYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           GS ++PVV+ +R+PN+L NG  GIA GMA NIP H LGE++DG +AV +NPDI +  LME
Sbjct: 121 GSERDPVVMPSRFPNLLGNGAAGIAEGMAPNIPPHQLGEIIDGVLAVSENPDITIPELME 180

Query: 219 IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           +I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA
Sbjct: 181 VIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKA 240

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+ F 
Sbjct: 241 KLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFG 300

Query: 339 VNMVAL 344
           +N++AL
Sbjct: 301 INLLAL 306


>gi|325114455|emb|CBZ50011.1| putative DNA gyrase subunit A [Neospora caninum Liverpool]
          Length = 1533

 Score =  460 bits (1184), Expect = e-127,   Method: Composition-based stats.
 Identities = 207/567 (36%), Positives = 314/567 (55%), Gaps = 72/567 (12%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +      +E++ S+L YA + IL RA+PD+RDGLKPVHRR+++ M Q+ V  +  + KCA
Sbjct: 140 LLDTQFVEELEKSFLCYAYSTILSRALPDVRDGLKPVHRRLIYAMQQLHVHPSGPFRKCA 199

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GEV+GK+HPHG+ A+YDALAR+AQ +  R  LI+G GNFGSVDGDPPAA RYTECRL
Sbjct: 200 RVVGEVLGKFHPHGDQAVYDALARLAQTFVARHPLIDGHGNFGSVDGDPPAAMRYTECRL 259

Query: 136 QKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            +     LL +L    V FRPN+D S +EPVV  A  P +L+ G  GIAVGM+T IP HN
Sbjct: 260 TRFCEDALLKNLSDKVVPFRPNFDASEEEPVVFPASVPLLLIQGSSGIAVGMSTQIPPHN 319

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+D  VA+I +P++  + L++I+ GPDFPTG +++    I +AY  G G +++RG  
Sbjct: 320 LHEVIDAAVALIRDPNLPDEELLKIVPGPDFPTGGLLVNAEEIPSAYKEGHGRVLLRGRV 379

Query: 255 H----------------------------------IEKTSGDREQI-----------VVT 269
           H                                   E+  G R +I           V+T
Sbjct: 380 HLEGEEGEEEGEEEGEEDVKKSAVRGRDREREDGGNEEQEGKRSRIKGKEKRKERRLVIT 439

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           E+PY VNK+ +++ IA+++  K +  +A +RDESD +G RVV+ L+R A A  IL  L +
Sbjct: 440 ELPYGVNKSTVMQVIAQMISVKFLEGVASVRDESDWRGIRVVLVLRREADAHTILTLLLK 499

Query: 330 YTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           +T+LQ    +N++AL    +P RF+L  +L ++++FR + + R       + + R+H+L 
Sbjct: 500 HTNLQVYIPMNLIALEKGTRPVRFSLKSLLLSWISFRFDTLRRLLAAEEAERKARSHLLE 559

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
           GL  AV  +D+VV+ +R S + + A+R+L +                           + 
Sbjct: 560 GLLRAVNLMDQVVKTVRESLSADEAKRKLAE-------------------------PPLG 594

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            S  Q +A+L L L+RLT L R  + +E       +     +L+  + +  ++  EL ++
Sbjct: 595 FSPAQAQALLRLTLSRLTRLERRQLEDEAAEQTRRLARLASLLAHDNEIYDLMTDELKAL 654

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVR 535
           K     PRRT++V       D      
Sbjct: 655 KSRHRAPRRTKVVWPRGKGRDRAKRPE 681



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V       ++     
Sbjct: 1218 IVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVVPPQLEGPEKTTEAA 1277

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            K   +Q              +    +           L   +  ++       GKR    
Sbjct: 1278 KEGDSQATETGEARRSSNEGEPSLLIVTAAGFVHFAFLHSADCLLVPA-----GKRLRVS 1332

Query: 816  DFRISNRSGKGIRATDVSKI 835
              R+  R G G+R   + + 
Sbjct: 1333 ALRMQRRRGVGVRVIRLVQR 1352



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 853  IILVSDKGTLIRVPVNEIRIASRA-TKGVVIFSTAKDERVVSVERIRESEIVDE 905
            I++V+  G  +R P + +R A  + T+GV        + V SV  +       E
Sbjct: 1218 IVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVVPPQLEGPE 1271



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 84/307 (27%), Gaps = 68/307 (22%)

Query: 634  MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVET- 689
            +   + ++   +  +V  T+HG   R   S           G  A++L + D + SV   
Sbjct: 1204 LNTDQGKTDTRSPSIVIVTRHGMGLRFPASSLRAAGSSKTRGVRAIRLRAGDSVASVAVV 1263

Query: 690  -------------------------------CTQENDILLTTKLGQCV------------ 706
                                              E  +L+ T  G               
Sbjct: 1264 PPQLEGPEKTTEAAKEGDSQATETGEARRSSNEGEPSLLIVTAAGFVHFAFLHSADCLLV 1323

Query: 707  ----RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                R  +SA+R    R  VGVR I L      +          +        +  S   
Sbjct: 1324 PAGKRLRVSALR-MQRRRGVGVRVIRL------VQRKQPKREAGESGAPGESGECGSDVP 1376

Query: 763  RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI---LTVSEKGFGKRTSSYDFRI 819
                            SS +     E       +++ +   LT  E G  + ++S +   
Sbjct: 1377 PRRETHCSSAWRQGKGSSADSKEEREAHAAKAGEDKGLEGTLTSQENGLAEPSASEE--- 1433

Query: 820  SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATK 878
                   + A      +           +++ +++ V+  G L+R     I     R  +
Sbjct: 1434 ---GSNYVVALLTLASSREAGRAKQAKGSEDRELLSVTQDGFLLRQSCEGIPMPRGRLAR 1490

Query: 879  GVVIFST 885
            GV +   
Sbjct: 1491 GVTLQRL 1497


>gi|47607410|gb|AAT36612.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 183/299 (61%), Positives = 238/299 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLAL 299


>gi|167772152|ref|ZP_02444205.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
 gi|167665950|gb|EDS10080.1| hypothetical protein ANACOL_03527 [Anaerotruncus colihominis DSM
           17241]
          Length = 745

 Score =  459 bits (1180), Expect = e-126,   Method: Composition-based stats.
 Identities = 208/732 (28%), Positives = 347/732 (47%), Gaps = 55/732 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    +    I   ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +MG+    +
Sbjct: 21  ENAGVLIEQPIVSTLEENYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLTGAR 79

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFG---SVDGDPPA 126
             K A + G  M K +PHG+ AIY+ L R+++   +L    ++ +GNFG   S D    A
Sbjct: 80  T-KSANVVGATM-KLNPHGDQAIYETLVRLSRGCEALLHPYVDSKGNFGKAYSRDM-AYA 136

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L   A+ L  D+ +DTVD   NYD + +EP +    +P+VLVN   GIAVGM
Sbjct: 137 ASRYTEVKLDPIANELFRDIDEDTVDMVDNYDNTMKEPTLFPVTFPSVLVNSNIGIAVGM 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGR 245
           A++I   NL EV +  +AV+ NP+ DL   +     PDFP G  I      ++  Y TGR
Sbjct: 197 ASSICPFNLAEVCETTIAVLKNPEHDLLETL---HAPDFPGGGYIVYDEQALRRIYDTGR 253

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G I +R              I VTEIP      A+++K+ +LV+  +I +IAD+RDE+D 
Sbjct: 254 GGIRVRARYTY---DRANNCIDVTEIPPTATVEAIMDKVVDLVKAGKIREIADMRDETDL 310

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G ++  +LKRG   D ++ +L++ T L+  FS N   L G  P    +  +++ + AFR
Sbjct: 311 NGLKLTFDLKRGVDPDRLMQRLFKLTPLEDSFSCNFNVLIGGMPRVCGVRTLIEEWAAFR 370

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            E V RR    LNK +++ H+L GL+  + ++D+ VRI+R +                  
Sbjct: 371 SECVRRRVFRQLNKKKEKLHLLEGLSRILLDIDKAVRIVRETQ----------------- 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                    ++            + EVQ   + E+RL +L          E+  L  +I 
Sbjct: 414 ---------EEREVVPNLMIGFGIDEVQAEYVAEIRLRQLNREHILKRTEEIGQLRDDIA 464

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVS 543
           E   IL  R ++  II  EL +V  +   PRR+ +       ++  E+      + +  +
Sbjct: 465 EMESILEHREKIRAIIISELENVGKKYAKPRRSLLYYPTEGEDEAGEEPAPDYAVHLFFT 524

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++     R             +++ D VT     + ++ +LFF+  G VYK K 
Sbjct: 525 REGYFKKITPQSLRMSGEH-------KLKEGDTVTQAVEATNNSDLLFFTDRGQVYKAKA 577

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                      G  +   L +++GE    +    +        Y++F  ++G   +  L+
Sbjct: 578 SDFDDTKASVMGDYIPARLGMDEGESAVYMAVTADYA-----GYMLFVFQNGKAAKVDLA 632

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +       K+     +   +  +    Q+ + LLT+  G+ +     A+ V   R++ G
Sbjct: 633 GYATKTNRKKLVGAYSTASPLAGIFQLAQDAEYLLTSSAGRMLIVHTGAVAVKTTRSTQG 692

Query: 724 VRGISLAKGDQV 735
           V  ++L K + V
Sbjct: 693 VAVMTLKKNNFV 704



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 75/213 (35%), Gaps = 30/213 (14%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             T+ G   +    ++R  +G +        L +GD V  ++    ++D  +      + 
Sbjct: 522 FFTREGYFKKITPQSLR-MSGEH-------KLKEGDTVTQAVEATNNSDLLFFTDRGQVY 573

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A     +  +     +     ++   S            ++L V + G   +     
Sbjct: 574 KAKASDFDDTKASVMGDYIPARLGMDEGESAVYMAVTADYAGYMLFVFQNGKAAKVDLAG 633

Query: 817 FRISNRSGKGIRATDVSKINEIG------ALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +           AT  ++   +G       L  +F +  + + +L S  G ++ V    +
Sbjct: 634 Y-----------ATKTNRKKLVGAYSTASPLAGIFQLAQDAEYLLTSSAGRMLIVHTGAV 682

Query: 871 RI-ASRATKGVVIFSTAKDERVVSVERIRESEI 902
            +  +R+T+GV + +  K+     VER+R  E 
Sbjct: 683 AVKTTRSTQGVAVMTLKKNN---FVERVRPFEE 712


>gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 401

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 172/402 (42%), Positives = 255/402 (63%), Gaps = 12/402 (2%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    + +I+ P   LD L++I++GPD+PT   +I+ R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVI 312
              E        +V+T +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI
Sbjct: 245 WTKEDG-----AVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299

Query: 313 ELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVV 370
             +      + ++N L+  T L+  + +N+  +    +P    L+ IL  ++AFR + V 
Sbjct: 300 VPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVR 359

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           RR  Y L K   R H+L GL +A  N+DEV+ IIR    P+ 
Sbjct: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401


>gi|325678874|ref|ZP_08158472.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
 gi|324109378|gb|EGC03596.1| DNA gyrase/topoisomerase IV, A subunit [Ruminococcus albus 8]
          Length = 747

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 209/763 (27%), Positives = 351/763 (46%), Gaps = 54/763 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    IT  ++ +Y+ YA++VI+ RA P++ DG KP HR++L+ M  MG+   K   KCA
Sbjct: 27  VAEQKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 84

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGDPP-AAERYTE 132
            I G  M K +PHG+ AIY+ L R+++ + +L    ++ +GNFG S   D   AA RYTE
Sbjct: 85  NIVGATM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTE 143

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+     L  D+ K+TVDF PNYD +  EP +  A +P +LVN   GI V MA+ +  
Sbjct: 144 AKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASAVCP 203

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIR 251
            NL EV +  +A++ +PD +    +   +GPDFP G   +     +   Y TGRGS+ +R
Sbjct: 204 FNLTEVCETAIALMKDPDANALDTL---KGPDFPGGGYLLYDEAELDKIYRTGRGSVKLR 260

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                   + D   I VTEIP      A++EKI  LV+  +I +I+ +RDE+D  G ++ 
Sbjct: 261 AKYRY---NSDERCIEVTEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIG 317

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++K+G   + ++ +LY+ T LQ  +S N   L    P+   +  IL  +  FR + V R
Sbjct: 318 IDIKKGVDPEKLMQKLYKLTPLQDTYSCNFNILVHGYPKVMGVYEILDEWTKFRLDCVKR 377

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R  Y L K RDR H+L GL   + ++D+ ++IIR +                        
Sbjct: 378 RVNYDLKKKRDRLHLLKGLGKILLDIDKAIKIIRETE----------------------- 414

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
              ++S           + EVQ   + E++L  L          +   L  EI E  +IL
Sbjct: 415 ---EESEVVPNLMIGFGIDEVQAEYVAEIKLRHLNREYILKRTADTERLEKEIAELEEIL 471

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  +L  +I  EL  V       R+T+        ++E+E+ I      + +S  GY K
Sbjct: 472 GSEKKLKQVIISELNDVIKNYGQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFK 531

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +  +   R             +++ D +      S    +LFFS    VYK K  R    
Sbjct: 532 KCTMQSLRMASDQ-------KLKEGDRMMAEIESSNRAELLFFSDKAAVYKAKASRFGNT 584

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G  +  +L  + GE  + ++   +      + Y++F   +G   +  L+ +    
Sbjct: 585 KASDLGDYIPAVLGFDSGEGFSAMVETMDY-----SGYLLFVYDNGKAAKVPLNAYETKT 639

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              K++     +  ++++        ++L T  G+ + F  + +     RN+ GV+ ++L
Sbjct: 640 NRKKLSNAYCEKAGLVTILKLNDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTL 699

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             K  ++    IV   +A+   +        A       +  +
Sbjct: 700 KAKNAKIEKAYIVSDEEAETLSKFRSKTIPVAGSLAKDLEDPD 742



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 14/182 (7%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L +GD++  MA +  ++            +   +    G+T+         +V G  S 
Sbjct: 545 KLKEGDRM--MAEIESSNRAELLFFSDKAAVYKAKASRFGNTKASDLGDYIPAVLGFDSG 602

Query: 788 ERCQELKLK---EQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVA 843
           E    +        ++L V + G   +     +   +NR     +    +   + G LV 
Sbjct: 603 EGFSAMVETMDYSGYLLFVYDNGKAAKVPLNAYETKTNR-----KKLSNAYCEKAG-LVT 656

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTA-KDERVVSVERIRESE 901
           +  +NDN Q++L +  G  +      +    +R T+GV + +   K+ ++     + + E
Sbjct: 657 ILKLNDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTLKAKNAKIEKAYIVSDEE 716

Query: 902 IV 903
             
Sbjct: 717 AE 718


>gi|28916624|gb|AAO59545.1| gyrase A [Bacillus mojavensis]
          Length = 299

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 183/299 (61%), Positives = 238/299 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           +LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTYFGINMLAL 299


>gi|166214662|ref|ZP_02240697.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166204152|gb|EDR48632.1| DNA gyrase/topoisomerase IV, A subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
          Length = 265

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 158/259 (61%), Positives = 199/259 (76%), Gaps = 1/259 (0%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 MSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L EV+DGC+A I++ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  +
Sbjct: 187 LSEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARA 246

Query: 255 HIE-KTSGDREQIVVTEIP 272
            +E      RE I+V EIP
Sbjct: 247 EVEADAKTGRETIIVHEIP 265


>gi|46019126|emb|CAE52027.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 293

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 179/292 (61%), Positives = 232/292 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP 
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPA 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITIQELMEYIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           +LVR+K+I  I DLRDESDR G RVVIE++R A+A VILN LY+ T+LQ+ F
Sbjct: 241 DLVRDKKIEGITDLRDESDRNGMRVVIEIRRDANAHVILNNLYKQTALQTSF 292


>gi|289449920|ref|YP_003475278.1| DNA gyrase/topoisomerase IV subunit A [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289184467|gb|ADC90892.1| DNA gyrase/topoisomerase IV, A subunit [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 727

 Score =  455 bits (1170), Expect = e-125,   Method: Composition-based stats.
 Identities = 210/722 (29%), Positives = 350/722 (48%), Gaps = 55/722 (7%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I+D ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +MG+    +  K A + G+
Sbjct: 12  ISDTLEKNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMGLLSGSRT-KSANVVGQ 69

Query: 81  VMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERYTECRLQ 136
            M K +PHG+AAIY+ + R+ + + SL    ++ +GNFG   S D    AA RYTE +L 
Sbjct: 70  TM-KLNPHGDAAIYETMVRLTRGNASLLHPYVDSKGNFGKQYSRDM-QFAASRYTEVKLD 127

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K    L   + KD V F PNYD + QEP +L A +P+VLVN   GIAVGMA+NI   NL 
Sbjct: 128 KICTELFRAIDKDVVTFTPNYDATMQEPTLLPATFPSVLVNANQGIAVGMASNICPFNLR 187

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSH 255
           EV    +A I NPD  ++     I+GPDFP G   I+ R  +   + +GRG++ +R    
Sbjct: 188 EVCSATIAYIKNPDCVIEK---YIKGPDFPGGGEFIVDREELAKVFDSGRGTLRLRARYR 244

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +         I + EIPY     A+L+ +AELV+  +  +I+D+RDE+D  G ++ IELK
Sbjct: 245 V---DLKNRLIEIYEIPYSTTVEAVLDNLAELVKAGKAKEISDVRDETDLNGLKLTIELK 301

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A  + ++N+L++ TSLQ+ F+ N   L   +P    +  ++  ++ FR   V R T +
Sbjct: 302 RAAEPEALMNRLFKQTSLQANFACNFNVLIDGRPRVLGVKQLIGEWLNFRRTCVRRETAF 361

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L + + + H+L GL   + ++D+ +RIIR + N                          
Sbjct: 362 DLQEKQAKLHLLEGLNTIMLDIDKAIRIIRETEN-------------------------- 395

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
           ++           +  VQ   I E++L  L          + + L  EI +  + L+S S
Sbjct: 396 ETDVIPNLCRGFAIDAVQAEYIAEIKLRNLNREYLLKRTADRSELTEEIAQLQNRLASTS 455

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED--EDCIVREDMVVTVSHLGYVKRVPL 553
            L   I + L  V ++    RRT +++     E   ED I    +   ++  GY+K++PL
Sbjct: 456 LLDAEIIRTLQQVAEKYGQDRRTVLIDAGEITEITGEDLIEDYRLKYFLTAHGYLKKLPL 515

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           +  R+          + ++DED +           ++ F+    VYK     +    P  
Sbjct: 516 TSLRSAGE-------LKIKDEDEIISEIEAGNRDEIMVFTDQANVYKISGHEIKDCKPSE 568

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
            G+ L  +L     E++  +    E          +FA  +G V R  +S +    +  K
Sbjct: 569 LGEYLPGLLDFAPEEKVIYLHVPGEYV-----GDFMFAFANGKVARVPVSAYKTKTKRRK 623

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           +      +  ++ +E   +    +L + L + + F    I     RN+ GV+ +S  +  
Sbjct: 624 LVAAYSDKSPLVGIEFAPENKSYVLISNLSKVLIFDSEQIPAKVTRNNQGVQVMSAKRNS 683

Query: 734 QV 735
            V
Sbjct: 684 VV 685


>gi|220928824|ref|YP_002505733.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
 gi|219999152|gb|ACL75753.1| DNA gyrase/topoisomerase IV subunit A [Clostridium cellulolyticum
           H10]
          Length = 728

 Score =  455 bits (1169), Expect = e-125,   Method: Composition-based stats.
 Identities = 208/727 (28%), Positives = 370/727 (50%), Gaps = 55/727 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +   +IT+ ++++Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +    K  
Sbjct: 3   HKNLVEQNITETLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLTGAKT- 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAE 128
           K + I G+ M K +PHG+ AIY+ + RM + + +L    ++ +GNFG   S D    AA 
Sbjct: 61  KSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFVDSKGNFGKQYSRDMK-FAAP 118

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K    +  D+ K+TV+F  NYDG+ +EPV+L   +P +LVN   GIAVGMA+
Sbjct: 119 RYTEAKLDKICEEIFKDIDKNTVEFVDNYDGTMKEPVLLPTTFPTILVNSNQGIAVGMAS 178

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGS 247
           NI + NL E+     A+ID+ ++ L+  +   + PDF +G   I     I++ Y  GRG 
Sbjct: 179 NICSFNLVEICKTTSALIDDENVVLEDYL---KAPDFSSGGQLIYSAKEIRDIYKNGRGG 235

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R     +K +     I + EIPY     A++++I EL++  +I +I D+RDE+D  G
Sbjct: 236 FKVRARYKYDKEN---NCIEIIEIPYTTTVEAIIDQIIELIKGGKIREITDVRDETDLSG 292

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++ I+L++    D+++N+L++ T LQ  FS N   L   +P    +  IL  ++ FR E
Sbjct: 293 LKLTIDLRKNTDPDILMNKLFKLTPLQDSFSCNFNILINGRPRVMGVRTILNEWLNFRVE 352

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  Y + K  D+ H+L+GL   + ++D+ ++IIR +         LM         
Sbjct: 353 CIKRQISYDIEKKSDKLHLLMGLKKILLDIDKAIQIIRGTEQEAKVVPNLMT-------- 404

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                + E+Q   I E++L  L      +   E  +L  EI E 
Sbjct: 405 ------------------GFGIDEIQADYIAEIKLRNLNKEYILNRVGETENLIKEIAEL 446

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
            DI  + +++  II+++L  +  +   PRRT I   E + ++  E  I   ++ V ++  
Sbjct: 447 KDIHGNDNKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKVFLTEH 506

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K++PL   RA            ++DED +           +L F++   VYK +++ 
Sbjct: 507 NYLKKIPLVSLRANPEH-------KLKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYE 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     + G+ L N+L L+  E+I  I             Y++F  ++G   + ++S +
Sbjct: 560 IPDCKASSLGEYLTNLLGLDNDEKIIYITATNNY-----EGYMLFFYENGKGAKIEMSGY 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                  K+A    S   ++ +   T++ +++  + + + + F  ++I     +NS GV+
Sbjct: 615 ATKTNRKKLANAYYSGSPLIRMIFITEDIELIAISSINKLLVFNTNSINPKTTKNSQGVQ 674

Query: 726 GISLAKG 732
            ++  KG
Sbjct: 675 ILTSKKG 681



 Score = 39.8 bits (91), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 11/165 (6%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D +I      +          +  + S    +       +     +     N  +
Sbjct: 524 KLKDEDIIIQEIETHNKADLLMFTNKFNVYKSRIYEIPDCKASSLGEYLTNLLGLDNDEK 583

Query: 788 ERCQELKLK-EQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIG-ALVAV 844
                     E ++L   E G G +     +   +NR         ++     G  L+ +
Sbjct: 584 IIYITATNNYEGYMLFFYENGKGAKIEMSGYATKTNR-------KKLANAYYSGSPLIRM 636

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKD 888
             + ++ ++I +S    L+    N I    ++ ++GV I ++ K 
Sbjct: 637 IFITEDIELIAISSINKLLVFNTNSINPKTTKNSQGVQILTSKKG 681


>gi|320120331|gb|EFE28486.2| DNA gyrase subunit A [Filifactor alocis ATCC 35896]
          Length = 733

 Score =  454 bits (1168), Expect = e-125,   Method: Composition-based stats.
 Identities = 201/751 (26%), Positives = 360/751 (47%), Gaps = 55/751 (7%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I D ++ +Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +  N    K A I G
Sbjct: 22  NIVDTLKQNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYRMNLL-NANRTKSANIVG 79

Query: 80  EVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAERYTECRL 135
           + M K +PHG++AIY+ + ++++ + SL    I+ +GNFG   S D    AA RYTE +L
Sbjct: 80  QTM-KLNPHGDSAIYETMVKLSRGNESLLHPYIDSKGNFGKSTSRDM-QFAAPRYTEAKL 137

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
                 L  ++ K+TVDF  NYD + +EPV+L   +PN+L+    GIAVGMA++IP+ NL
Sbjct: 138 MPLCKELFGEIEKNTVDFVDNYDSTMKEPVLLPTTFPNILLKANKGIAVGMASSIPSFNL 197

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRGVS 254
            E+ +  +A + + + ++      I GPDFP+G   +     +K+ Y TGRGS  +RG  
Sbjct: 198 SEICNYTIAYLKDINCNMFD---FILGPDFPSGGELLFDEEEMKSIYETGRGSFKLRGKY 254

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
              K     + I + EIPY      ++EKI +L+++  + +I D+RDE+D  G ++ I++
Sbjct: 255 RYLKKE---QLIEIYEIPYTTTVEVIIEKIIDLIKDGTLREITDIRDETDLNGLKITIDV 311

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           ++ A  + ++ ++++YT+L+  FS N   L   KP+   +  I+  ++ FR + +VRRT 
Sbjct: 312 RKNADVESMMGKIFKYTTLEDSFSCNFNVLIDNKPKILGIKDIIFHWLNFRRQCIVRRTL 371

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
             +     R  +L GL   + ++D+ + IIR +                           
Sbjct: 372 NEMEDKSKRLFLLQGLEKIILDIDKAIAIIRNTE-------------------------- 405

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            +            + E Q   ILE++L  L         +E+  L  EI +  +I  S+
Sbjct: 406 KEIDVLPNLMNAFAIEEKQAEYILEIKLRNLNKEYILKKISEIKELEEEITKLEEIYHSQ 465

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVP 552
                +I  EL  +       R+T IV          E+      + + ++  GY+K++P
Sbjct: 466 KLQDKLIISELKKIIKTYGQERKTTIVSKKDVVVYSKENFTEDYAVTMFLTKDGYLKKIP 525

Query: 553 LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
               RA            ++D D +     ++     +  S+   +Y+ KV  L      
Sbjct: 526 ELSLRAYSEQ-------KLKDNDSILQQIEMNNTDVFMLLSTNNVLYQVKVSDLKDTKAS 578

Query: 613 ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
             G  L N L + + ERI  ++   E        Y+V+  ++G V +   S +   +   
Sbjct: 579 LLGLFLPNYLKMEENERIIQMIFPEEY-----EGYMVYFFENGKVAKINFSSYQTKSFRK 633

Query: 673 KIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           K+     ++  ++      ++   ++ T   +C+    S+I     R+S GV+ I+L K 
Sbjct: 634 KLQNVYSTQSPLVDCFHIKKDETFVIFTDNYRCLSIDTSSIPEKISRSSQGVKVINLNKN 693

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRR 763
            +V  + ++   D ++D         SA++ 
Sbjct: 694 AKVERIELLESDDREWDFCKTKTIPSSAKKN 724



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 75/212 (35%), Gaps = 21/212 (9%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +  TK G   + P  ++R ++ +         L   D +  +  +   + D    +    
Sbjct: 513 MFLTKDGYLKKIPELSLRAYSEQ--------KLKDNDSI--LQQIEMNNTDVFMLLSTNN 562

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF----ILTVSEKGFGKRT 812
            +   +     DT+         +       ER  ++   E++    +    E G   + 
Sbjct: 563 VLYQVKVSDLKDTKASLLGLFLPNYLKMEENERIIQMIFPEEYEGYMVYFF-ENGKVAKI 621

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +   ++  +      R    +  +    LV  F +  ++  ++ +D    + +  + I  
Sbjct: 622 NFSSYQTKS-----FRKKLQNVYSTQSPLVDCFHIKKDETFVIFTDNYRCLSIDTSSIPE 676

Query: 873 -ASRATKGVVIFSTAKDERVVSVERIRESEIV 903
             SR+++GV + +  K+ +V  +E +   +  
Sbjct: 677 KISRSSQGVKVINLNKNAKVERIELLESDDRE 708


>gi|150390856|ref|YP_001320905.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
 gi|149950718|gb|ABR49246.1| DNA topoisomerase (ATP-hydrolyzing) [Alkaliphilus metalliredigens
           QYMF]
          Length = 930

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 229/965 (23%), Positives = 428/965 (44%), Gaps = 124/965 (12%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           ++    I    I D ++++Y+ YA++VI+ RA+P++ DG KP HR++L+ M QMG+   K
Sbjct: 2   DKSINEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLL-TK 59

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFG---SVDGDPP 125
              K A I G  M K +PHG+ AIY+ + +M +    L    ++ +GNFG   S D    
Sbjct: 60  GRSKSANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREA 118

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           +A RYTE +L+K    +  ++ K+ VDF  NYD + +EP +L   +PN+LV    GIAVG
Sbjct: 119 SA-RYTEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVG 177

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATG 244
           MA +IP+ NL EV +  +A + + +IDL   +   + PDF TG  ++     +K  Y TG
Sbjct: 178 MAEHIPSFNLKEVCEATIAYLKDKEIDLLEYL---KAPDFSTGGELIFNEVTMKQVYHTG 234

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RG+  +RG     K       I + EIPY  +  A++E I ELV++ +I +I D+RDE+D
Sbjct: 235 RGTFKVRGKYRYVKAD---NAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETD 291

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           + G ++ I+LKRG + D ++ + +++T L+  F  N   L    P+   +  IL  ++AF
Sbjct: 292 KNGLKITIDLKRGVNPDDLMVKFFKWTKLEDSFGCNFNILINGHPKVMGVKEILDHWIAF 351

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R   + R+ ++ ++K  ++ ++L GL     N+ EVV +I+ +   +     LM++    
Sbjct: 352 RLSCLKRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQ---- 407

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L+  Q   I E++L  L          E++++  E+
Sbjct: 408 ----------------------FDLNLAQAEYIAEIKLRSLNQELILKKIKEISAIEKEL 445

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTV 542
           K    +L+  S+   II  +L  + +    PR+T I+         +E  I   +M + +
Sbjct: 446 KRLGMVLARESKQNEIIVNDLKRISEAYGIPRKTDIINENEVEVLSEEILIENYNMKLFL 505

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           ++ GY+K++ L+  R+            ++D D++      +    VL FS+   VYK K
Sbjct: 506 TNEGYIKKISLASLRSSGDH-------KLKDNDYIVQEIDGTNRGEVLLFSNKETVYKIK 558

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
            + L        G+ L N+L L+  E I  I+   + +      +++F  ++G   +  +
Sbjct: 559 AYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQ-----GHMLFFFENGKGAKIPI 613

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           + +       ++A        ++ + +  ++ +++ T+ L + + F    +     RNS 
Sbjct: 614 TSYETKTNRKQLANAYSGDSPLVYISSIEEDLEMMATSNLNKTLIFNTEEMSPINSRNSK 673

Query: 723 GV------RGISL----------------------------------------------- 729
           GV      +GISL                                               
Sbjct: 674 GVQVFKCKKGISLKKIKPMDEVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPLTTLVED 733

Query: 730 -----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                 K D +I                  + + +  R L   + +  +  +   S+   
Sbjct: 734 EEQRLKKDDYIIQEVEGAEEGELLLFSNKQILYKTKARELEEDEDKVASIGQRIRSILAL 793

Query: 785 ISEERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGA 840
            ++E    +   + +   +L   E G G +     +   +NR          +  N    
Sbjct: 794 DADEDIIYITYTDNYKGHMLFFFENGKGAKIPLESYETKTNRKQL------ANAYNGESP 847

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE 899
           LV +  + ++ +++  S+   ++     +I   +SR +KGV I  + +   +  ++ + E
Sbjct: 848 LVYISNIQEDIELVATSNINKILIFNTAQINPKSSRDSKGVQILKSKEGSYLQEIKALDE 907

Query: 900 SEIVD 904
            +  D
Sbjct: 908 FDYED 912


>gi|315930381|gb|EFV09458.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 303

 Score =  452 bits (1162), Expect = e-124,   Method: Composition-based stats.
 Identities = 164/304 (53%), Positives = 226/304 (74%), Gaps = 1/304 (0%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP H+L E++DG + ++DN D  L+ +M+ I+GPDFPTG +I G+ GI  AY TGR
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGR 240

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G + +R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+E++I  I+++RDES++
Sbjct: 241 GRVKVRAKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNK 299

Query: 306 QGYR 309
           +G R
Sbjct: 300 EGIR 303


>gi|317133208|ref|YP_004092522.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
 gi|315471187|gb|ADU27791.1| DNA topoisomerase (ATP-hydrolyzing) [Ethanoligenens harbinense
           YUAN-3]
          Length = 744

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 212/766 (27%), Positives = 375/766 (48%), Gaps = 55/766 (7%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E    + S  IT  +  +Y+ YA++VI+ RAIP++ DG KP HR+IL+ M +MG+    +
Sbjct: 20  EGAGKVLSEPITHTLTANYMPYAMSVIISRAIPEI-DGFKPSHRKILYTMYKMGLLSGAR 78

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPA 126
             K A + G+ M + +PHG+ AIY+ + R+++ + +L    ++ +GNFG   S D    A
Sbjct: 79  T-KSANVVGQTM-RLNPHGDMAIYETMVRLSRGNEALLHAYVDSKGNFGKAYSRDM-AFA 135

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE +L    + L  D+ K TVDF  NYD + QEPV+L A +P++L+N   GIAVGM
Sbjct: 136 ASRYTEVKLDPICNELFRDIDKKTVDFVDNYDSTMQEPVLLPAAFPSILINSNIGIAVGM 195

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYATGR 245
           A++I   NL EV +  + ++ +P      L+ +++ PDFP G ++      +++ Y TGR
Sbjct: 196 ASSICPFNLTEVCETTIRLMKDPAA---DLLPLLKAPDFPGGGLVLYDADTLRSVYETGR 252

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           GS+ +R    ++K       I +TEIP      A++++I ELV+  ++ +IAD+RDE+D 
Sbjct: 253 GSLRVRARYQLDKAGR---FIEITEIPPTTTVEAIMDRIVELVKTGKVREIADIRDETDL 309

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G ++ I+LKRGA  D ++++L+R T L+  F  N   L G +P+   + G+L+A+ AFR
Sbjct: 310 SGLKLTIDLKRGADGDKLMSRLFRLTPLEDTFGCNFNVLVGGRPQVLGVRGLLRAWTAFR 369

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + V RR ++ L +A+DR H+L GL   + ++D+ VRI+R +                  
Sbjct: 370 MDCVRRRLRFDLGRAKDRLHLLRGLEKILLDIDKAVRIVRETD----------------- 412

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                    ++S           + EVQ   + E++L         +   E+  L  EI 
Sbjct: 413 ---------EESEVVPNLMIGFGIDEVQAEFVAEIKLRHFNRAYILEKTQEIEQLEREIA 463

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG--LLDMEDEDCIVREDMVVTVS 543
           +    L   +R+L +I  EL ++  +   PRR+ I+         DE+ I    + + ++
Sbjct: 464 DLEATLGEDARMLRLIADELRAIVKKYGRPRRSLILYDVKEETAPDEEEIPAYPVTLFLT 523

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             GY K++     R             +++ D +      +    +LFF+    VYK  V
Sbjct: 524 REGYFKKITPQSLRMSGEQ-------KLKESDALVQTVESTNGCELLFFTDRCQVYKSSV 576

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                G     G  L   L  ++GE +  ++   +      + +++F   +G   + +L+
Sbjct: 577 SEFEDGKASVLGDYLPARLGFDEGEALRRMVVAKQY-----DGWLLFIYANGKAAKVELA 631

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +    R  K+      ++ ++++   T++ +++LT+  G+ +     A+ V     + G
Sbjct: 632 SYKTKTRRRKLVNAYSDKESLVAMFHLTEDREVVLTSSAGKMLLLDTGAVPVKTTHTTQG 691

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           V  ++L  G  V    +          R        A +     DT
Sbjct: 692 VTAMTLKPGQAVTDAQLYEEGTFKNPGRYRVRNLPGAGQMPAREDT 737



 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 15/204 (7%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             T+ G   +    ++R  +G          L + D ++ ++      +  +    C + 
Sbjct: 521 FLTREGYFKKITPQSLR-MSGEQ-------KLKESDALVQTVESTNGCELLFFTDRCQVY 572

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
             S         +     L      +   +  R    K  + ++L +   G   +     
Sbjct: 573 KSSVSEFEDGKASVLGDYLPARLGFDEGEALRRMVVAKQYDGWLLFIYANGKAAKVELAS 632

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI-ASR 875
           ++   R  K + A    +     +LVA+F + ++ +++L S  G ++ +    + +  + 
Sbjct: 633 YKTKTRRRKLVNAYSDKE-----SLVAMFHLTEDREVVLTSSAGKMLLLDTGAVPVKTTH 687

Query: 876 ATKGVVIFSTAKDERVVSVERIRE 899
            T+GV   +    + V   +   E
Sbjct: 688 TTQGVTAMTLKPGQAVTDAQLYEE 711


>gi|13810781|gb|AAK40035.1|AF272025_1 DNA gyrase subunit A [Bacillus vallismortis]
          Length = 301

 Score =  451 bits (1161), Expect = e-124,   Method: Composition-based stats.
 Identities = 180/300 (60%), Positives = 239/300 (79%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L
Sbjct: 1   PVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYML 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           ++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R
Sbjct: 61  VDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME+I GPDFPT   
Sbjct: 121 FPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQDLMEVIPGPDFPTAGQ 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+
Sbjct: 181 ILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRD 240

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+
Sbjct: 241 KKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPK 300


>gi|289770512|ref|ZP_06529890.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
 gi|289700711|gb|EFD68140.1| DNA topoisomerase subunit A [Streptomyces lividans TK24]
          Length = 788

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 251/717 (35%), Positives = 379/717 (52%), Gaps = 96/717 (13%)

Query: 204 AVIDNPDID--LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
                P  +  LDAL+E I+GPDFPTGA+++GR GI+ AY TGRGSI +R V  +E+   
Sbjct: 134 WRTTRPSHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSITMRAVVEVEEIQ- 192

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASA 320
           +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE S R G R+VI LKR A A
Sbjct: 193 NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQRLVIVLKRDAVA 252

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            V+LN LY++T LQS F  NM+AL    P   +L   ++ +V  + EV+VRRT++ L KA
Sbjct: 253 KVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVNHQIEVIVRRTRFRLRKA 312

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            +RAH+L GL  A+  +DEV+ +IR S   E AR  LM                      
Sbjct: 313 EERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM---------------------- 350

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 + + E+Q  AILE++L RL  L R  I  E + L  +I E  +IL+S  R  GI
Sbjct: 351 ----DLLEIDEIQANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGI 406

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           + +EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+KR     YRAQ+
Sbjct: 407 VSEELTALVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYIKRTKTDDYRAQK 466

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
           RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP     ARG+ + N
Sbjct: 467 RGGKGVRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVAN 526

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L+    E I  I    + E+     Y+V ATK G V++  L D+      G IA+ L  
Sbjct: 527 LLAFQPDETIAQIRAIRDYEAV---PYLVLATKAGLVKKTPLKDYDSPRSGGVIAINLRE 583

Query: 681 -----RDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGD 733
                 DE++  E  + E+D+LL +K  Q +RF  S   +R   GR + GV+G+S  +GD
Sbjct: 584 QADGSDDELIGAELVSAEDDLLLISKKAQSIRFTASDDTLRPM-GRATSGVKGMSFREGD 642

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           +++SM +V                                                    
Sbjct: 643 ELLSMNVVR--------------------------------------------------- 651

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                F+ T ++ G+ KRTS  ++R+  R G GI+A  + +  + G+LV    V ++D+I
Sbjct: 652 --AGTFVFTATDGGYAKRTSVDEYRVQGRGGLGIKAAKIVE--DRGSLVGALVVEEHDEI 707

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           + ++  G +IR  VN +R   R T GV + +  K + VV + R  E+    E    +
Sbjct: 708 LAITLSGGVIRTRVNGVRETGRDTMGVQLINLGKRDAVVGIARNAEAGREAEEVDGD 764


>gi|291542542|emb|CBL15652.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Ruminococcus bromii L2-63]
          Length = 747

 Score =  450 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 207/765 (27%), Positives = 366/765 (47%), Gaps = 55/765 (7%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    I   ++ +Y+ YA++VIL RAIP++ DG KP HR++L+ M +MG+  N    K 
Sbjct: 26  EVVEQPIVSTIRENYMPYAMSVILSRAIPEI-DGFKPSHRKLLYMMYKMGLL-NGGRTKS 83

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFG---SVDGDPPAAERY 130
           A I G  M K +PHG++AIYD + R+++ + +L    ++ +GNFG   S D    AA RY
Sbjct: 84  ANIVGATM-KLNPHGDSAIYDTMVRLSRGYEALLHPYVDSKGNFGKFYSRDM-AWAASRY 141

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE +L    + L  D+ KDTVDF  NYD + +EP +L   +P+VLVN   GIAVGMA+NI
Sbjct: 142 TEAKLDAICNELFRDIDKDTVDFVDNYDNTMKEPSLLPVAFPSVLVNANTGIAVGMASNI 201

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRGSIV 249
            + NL E+ +   A+I +PD D+ + +     PDF  G  I+     I   Y TGRGSI 
Sbjct: 202 CSFNLREICETTAALIRDPDHDIKSTL---PAPDFTGGCQIIYDENVINQVYETGRGSIK 258

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R     +K++     I +  IP       ++EK+ +LV++ ++ +I+D+RDE+   G +
Sbjct: 259 LRAKYVYDKSA---NCIDILSIPATTTCEVIIEKVIDLVKQGKVKEISDIRDETGIDGLK 315

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           + I+LKRG  AD ++ +LYR+T+L+  ++ N   L    P    +  +L+ ++AFR E V
Sbjct: 316 ITIDLKRGVDADKLMTKLYRFTTLEDSYACNFNVLIAGVPRVLGVKALLEEWIAFRIECV 375

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT +  NK  D+ H+L GL   + ++D+ V+I+R +                      
Sbjct: 376 RRRTYFDRNKKADKLHLLRGLEKILLDIDKAVKIVRETD--------------------- 414

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                ++S           + E+Q   + E++L  L          +L  L  EI E  +
Sbjct: 415 -----EESEVVPNLMIGFGIDEIQAEYVAEIKLRHLNREYILKRTKDLEDLEKEIAELDE 469

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGY 547
           IL S++R+  II +EL S+ ++   PR++ I+   +   +E+   I    + +  +  GY
Sbjct: 470 ILKSKARIKTIIVKELKSIAEKYGQPRKSIIIYDDVARYEEETVEIPDYPVNLFFTKEGY 529

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
            K++     R             ++D D +      + +  +LFF+    VYK K     
Sbjct: 530 FKKITPQSLRMSGEQ-------KLKDGDEIIQELEFTNNCDLLFFTDKCQVYKAKADDFA 582

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                  G  +   L  ++GE    ++   + +       ++FA ++G   +  L  +  
Sbjct: 583 QTKASVLGDYVAAKLGFDEGENAVKMVVTKDYKGM-----LLFAFENGKAAKVPLESYAT 637

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
                K+      +  ++ +    ++ ++L     G  +     A+ +   R++ GV  +
Sbjct: 638 KTNRKKLTGAYSDKSPLVGLLYMPEDEEVLFKASSGNMLLVHTGALALKTTRSTQGVAVL 697

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
              KG ++ S+           +R       +     ++ D+++ 
Sbjct: 698 KPKKGHRLFSIERYKDGTFTNPKRYRTGSLPARGALPVNDDSKDE 742



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 73/207 (35%), Gaps = 27/207 (13%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI-SMAIVLHADADYDERICYMK 756
             TK G   +    ++R  +G          L  GD++I  +    + D  +    C + 
Sbjct: 523 FFTKEGYFKKITPQSLR-MSGEQ-------KLKDGDEIIQELEFTNNCDLLFFTDKCQVY 574

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
              A     +  +     +      +   +  +    K  +  +L   E G   +     
Sbjct: 575 KAKADDFAQTKASVLGDYVAAKLGFDEGENAVKMVVTKDYKGMLLFAFENGKAAKVPLES 634

Query: 817 FRISNRSGKGIRATDVSKINEIG------ALVAVFPVNDNDQIILVSDKGTLIRVPVNEI 870
           +           AT  ++    G       LV +  + ++++++  +  G ++ V    +
Sbjct: 635 Y-----------ATKTNRKKLTGAYSDKSPLVGLLYMPEDEEVLFKASSGNMLLVHTGAL 683

Query: 871 RI-ASRATKGVVIFSTAKDERVVSVER 896
            +  +R+T+GV +    K  R+ S+ER
Sbjct: 684 ALKTTRSTQGVAVLKPKKGHRLFSIER 710


>gi|4099112|gb|AAD00551.1| topoisomerase II ParC [Mycoplasma arthritidis]
          Length = 450

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 173/475 (36%), Positives = 265/475 (55%), Gaps = 28/475 (5%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+          + I   ++ D M   +  Y+  +I  RAIPD RDGLKPV RRIL+ M
Sbjct: 1   MTKKQKEEMYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             + +  N+ + K A+I GEVMG+YHPHG+++IY+AL RM+Q+W     LIE  GN GS+
Sbjct: 61  YGLKLYNNQAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSI 120

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           D DP AA RYTE RL+K +  +L DL +  V   PN+D +  EPVVL +  PN+L+NG  
Sbjct: 121 DDDPAAAMRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSK 180

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT IP HNL EV+D  + +I NP I L+ L +I++GPDFPTG VI G  GI  A
Sbjct: 181 GIAAGFATEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGGVIHGIEGIAQA 240

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIV---VTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + TG+G I I              +I+   + E P+ V K+ ++  I  LV +K I  + 
Sbjct: 241 FETGQGKINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVK 300

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
           ++RD+S+R+G+ + +EL+  A+A+ I+N L   T L+  ++ NMVA++   P+   L  +
Sbjct: 301 EVRDQSNREGFSIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAIHENSPKLMNLQML 360

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  +++  +++  +  ++ L K   R  ++ G        DEV+R+I+ S N +    E 
Sbjct: 361 LFTYLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEA 420

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +++                         T   + +Q  AI ELRL +L+ + + +
Sbjct: 421 LEK-------------------------TFGFTNIQATAIAELRLYKLSKMDQLE 450


>gi|227518803|ref|ZP_03948852.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
 gi|227073716|gb|EEI11679.1| possible DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis
           TX0104]
          Length = 334

 Score =  450 bits (1156), Expect = e-124,   Method: Composition-based stats.
 Identities = 163/330 (49%), Positives = 237/330 (71%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           PTHNL E++DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++
Sbjct: 185 PTHNLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVIL 244

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  + IE   G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++
Sbjct: 245 RAKTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQI 304

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVN 340
           V+ELK+  +A+ ILN L++ T LQ  ++ N
Sbjct: 305 VVELKKDVNAEGILNYLFKNTELQINYNFN 334


>gi|326791468|ref|YP_004309289.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
 gi|326542232|gb|ADZ84091.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium lentocellum DSM
           5427]
          Length = 714

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 207/753 (27%), Positives = 373/753 (49%), Gaps = 58/753 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +   +IT+ ++++Y+ YA++VI+ RA+P++ DG KP HR++L+ M +M +    +  K A
Sbjct: 5   VIKQNITETLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMYKMNLIKGLRT-KSA 62

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRL-LLIEGQGNFG---SVDGDPPAAERYT 131
            I G+ M K +PHG+ AIY+ + R+ + +S  +   ++ +GNFG   S D    AA RYT
Sbjct: 63  NIVGQTM-KLNPHGDGAIYETMVRLTKGYSALITPFVDSKGNFGKVYSRDMAYAAA-RYT 120

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E +L +    + +D+ +D VDF  NYDG+ +EPV+L  R+PN+LVN   GIAVGMA+N  
Sbjct: 121 EAKLSEICTEVFNDIEEDAVDFVDNYDGTLKEPVLLPTRFPNILVNPNQGIAVGMASNFC 180

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVI 250
           + NL EV +  +A + N   +   ++E I  PDFPTG  I+   T ++    TG+GS  +
Sbjct: 181 SFNLKEVCNATIAYLKN---EDADVLEHIIAPDFPTGGQIILDETEMREVLETGKGSFKV 237

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R   H  K       I + EIPY     A+++KI ELV+  +I +I D+RDE+D  G ++
Sbjct: 238 RAKYHYIKKE---NCIEIIEIPYTTTVEAIIDKIEELVKAGKIKEITDVRDETDLSGLKL 294

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            I+LKR    ++++ +L++ T L+  FS N   L    P+      I+K +  FR++ VV
Sbjct: 295 TIDLKRSTDPEMLMQKLFKSTPLEDSFSCNFNLLINGMPKVLGFKEIIKEWCEFRQQCVV 354

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+ ++ + K   R H+L+GL   + ++D+ + I+R +   +     LM            
Sbjct: 355 RKYRFAIEKMEKRYHLLIGLKQILLDIDKAIEIVRHTEKEKDVVPRLMA----------- 403

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             +SE+Q   + E++L  L      +   EL+ L  +I E  DI
Sbjct: 404 ---------------HFEISEMQADYVAEIKLRHLNKQYILETLKELDELEKKIAELKDI 448

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYV 548
           + +  ++  +I  EL  ++ +  T R+T +++      ++ E+ I   ++ +  +   Y+
Sbjct: 449 IENPKKVKKVISDELKVIQKKFGTERQTEVIKHTEVVKVKHEELIEDYNVKLFFTDHQYL 508

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K++ L   R+            ++++D +      S  + +L F++   VYK K+  +  
Sbjct: 509 KKITLVSLRSSGEQ-------KLKEDDTIIQEIEASNRSDLLLFTNKSNVYKLKLHEIED 561

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
                 G  L N+L L +GE+I  I    +        Y+ F    G V +  ++ +   
Sbjct: 562 TKASQFGVYLPNLLDLEEGEQILAIHSTTDY-----TGYIAFGFSTGKVAKVPVAAYETK 616

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
               K+      +   + +    +E+ +LLT +  +    P+  +     R++ GV+ +S
Sbjct: 617 TNRKKLIKAFYGKSPCVGIAFVEEEDILLLTREDDKVGVVPVVLLEEKQKRDANGVQALS 676

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           + K    I M  ++ A    +E I  +      
Sbjct: 677 ITKK---IGMKKLVKASELTEEMIARLAKELPA 706


>gi|326201734|ref|ZP_08191605.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
 gi|325988334|gb|EGD49159.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium papyrosolvens DSM
           2782]
          Length = 728

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 205/738 (27%), Positives = 371/738 (50%), Gaps = 55/738 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +   +ITD ++++Y+ YA++VI+ RAIP++ DG KP HR++L+ M +M +    K  
Sbjct: 3   HKNLVEQNITDTLESNYMPYAMSVIVSRAIPEI-DGFKPSHRKLLYTMYKMSLLAGAKT- 60

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG---SVDGDPPAAE 128
           K + I G+ M K +PHG+ AIY+ + RM + + +L    I+ +GNFG   S D    AA 
Sbjct: 61  KSSNIVGQTM-KLNPHGDMAIYETMVRMTRGNNALLHPFIDSKGNFGKQYSRDMK-FAAP 118

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE +L K    +  D+ K+TVDF  NYDG+ +EPV+L   +P++LVN   GIAVGMA+
Sbjct: 119 RYTEAKLDKLCEEIFKDIDKNTVDFVDNYDGTMKEPVLLPTTFPSILVNSNQGIAVGMAS 178

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGS 247
           NI + NL E+     A+ID+ +I ++  +   + PDF +G   I     I++ Y  GRGS
Sbjct: 179 NICSFNLEEICKTTSALIDDENIVIEDYL---QAPDFSSGGQLIYSAKEIRDIYNNGRGS 235

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
             +R   + +  +     I + EIPY     A++++I EL++  +I +I D+RDE+D  G
Sbjct: 236 FKVRAKYNYDNKN---NCIEIVEIPYTTTVEAIIDQIIELIKGGKIKEITDVRDETDLSG 292

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            ++ ++L++    D+++ +L++ T LQ  F+ N   L   +P    +  IL  +++FR +
Sbjct: 293 LKLTLDLRKNTDPDMLMKKLFKLTPLQDSFNCNFNILINGRPRVMGVRTILNEWLSFRVD 352

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
            + R+  Y + K  D+ H+L+GL   + ++D+ + IIR +                    
Sbjct: 353 CIKRQILYDIQKKSDKLHLLMGLKKILLDIDKAIEIIRKTEQ------------------ 394

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                   +            + ++Q   I E++L  L      +   E +SL  EI E 
Sbjct: 395 --------EVMVVPNLISGFDIDQIQAEYIAEIKLRNLNKEYILNRVGETDSLIKEIAEL 446

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHL 545
            D   +  ++  II+++L  +  +   PRRT I   E + ++  E  I   ++ + ++  
Sbjct: 447 KDTHGNHKKVKKIIQKQLSEIAKKFGKPRRTEIISDEQVEEITTEHFIEDYNLKIFLTEQ 506

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            Y+K++PL   RA            ++DED +           +L F++   VYK K++ 
Sbjct: 507 NYLKKIPLVSLRANPEH-------KLKDEDTIVQEIETHNKADLLLFTNKFNVYKSKIYE 559

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P     + G+ L N+L L+  E+I  I             Y++F  ++G   +  LS +
Sbjct: 560 IPDCKASSLGEYLTNLLGLDSDEKIIYITATDNY-----EGYMLFFYENGKGAKIDLSGY 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
                  K+A    +   ++ +   T++ +++  + + + + F   +I V   +NS GV+
Sbjct: 615 ATKTNRKKLANAYYNGSPLIRMFFATEDIELIAISSINKMLVFNTESIGVKTTKNSQGVQ 674

Query: 726 GISLAKGDQVISMAIVLH 743
            ++  KG  +  +  +  
Sbjct: 675 ILTSKKGSIMTGIKTLDE 692



 Score = 42.9 bits (99), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 58/176 (32%), Gaps = 11/176 (6%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D ++      +          +  + S    +       +     +     +  +
Sbjct: 524 KLKDEDTIVQEIETHNKADLLLFTNKFNVYKSKIYEIPDCKASSLGEYLTNLLGLDSDEK 583

Query: 788 ERCQELKLK-EQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIG-ALVAV 844
                     E ++L   E G G +     +   +NR         ++     G  L+ +
Sbjct: 584 IIYITATDNYEGYMLFFYENGKGAKIDLSGYATKTNR-------KKLANAYYNGSPLIRM 636

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRI-ASRATKGVVIFSTAKDERVVSVERIRE 899
           F   ++ ++I +S    ++      I +  ++ ++GV I ++ K   +  ++ + E
Sbjct: 637 FFATEDIELIAISSINKMLVFNTESIGVKTTKNSQGVQILTSKKGSIMTGIKTLDE 692


>gi|317057035|ref|YP_004105502.1| DNA topoisomerase [Ruminococcus albus 7]
 gi|315449304|gb|ADU22868.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 745

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 212/763 (27%), Positives = 353/763 (46%), Gaps = 54/763 (7%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +    IT  ++ +Y+ YA++VI+ RA P++ DG KP HR++L+ M  MG+   K   KCA
Sbjct: 26  VAEEKITQTLEKNYMPYAMSVIVSRAFPEI-DGFKPSHRKLLYTMYLMGLIKGK-LTKCA 83

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFG-SVDGDPP-AAERYTE 132
            I G  M K +PHG+ AIY+ L R+++ + +L    ++ +GNFG S   D   AA RYTE
Sbjct: 84  NIVGATM-KLNPHGDGAIYETLVRLSRGNEALLHPYVQSKGNFGKSYSRDMAYAASRYTE 142

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            +L+     L  D+ K+TVDF PNYD +  EP +  A +P +LVN   GI V MA+++  
Sbjct: 143 AKLEPICEELFRDIDKETVDFVPNYDNTMTEPTLFPATFPTILVNANVGIGVSMASSVCP 202

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIR 251
            NL EV +  +A+I N D +    +   +GPDFP G   +     ++  Y TGRGS+ +R
Sbjct: 203 FNLAEVCETAIALIKNKDANALDTL---KGPDFPGGGYLLYDEAELEKIYRTGRGSVKLR 259

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
                 K       I +TEIP      A++EKI  LV+  +I +I+ +RDE+D  G ++ 
Sbjct: 260 AKYRFNKEER---CIEITEIPATTTIEAIIEKIIALVKAGKIKEISYIRDETDLDGLQIG 316

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           I++K+G   D ++ +LY+ T LQ  +S N   L    P+   +  IL  +  FR + V R
Sbjct: 317 IDIKKGVDPDKLMQKLYKLTPLQDTYSCNFNILVHGYPKVMGVYEILDEWTRFRVDCVRR 376

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
           R +Y L K +D+ H+L GL   + ++D+ +RIIR +                        
Sbjct: 377 RVEYDLKKKKDKLHLLKGLGKILLDIDKAIRIIRETE----------------------- 413

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
              ++S           + E+Q   + E++L  L         +E   L  EI E  D+L
Sbjct: 414 ---EESEVIPNLMIGFGIDEIQADYVAEIKLRHLNREYILKRTSETEKLEKEIAELEDVL 470

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
            S  ++  II +EL  V       R+T+        ++E+E+ I      + +S  GY K
Sbjct: 471 GSEKKIKDIIIRELKDVIKNYGQERKTQFFYQSDIEEVEEEEEIEDYPCKLFISESGYFK 530

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           +  +   R             +++ D +      S    +LFFS    VYK K  R    
Sbjct: 531 KCTMQSLRMASDQ-------KLKEGDRMMSETESSNRAELLFFSDKASVYKSKASRFGNT 583

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                G  +  +L  + GE   T++   +         ++F  ++G   +  L  +    
Sbjct: 584 KASDLGDYIPAVLGFDNGEAFHTMVETMDYSGC-----LLFVFENGKAAKVPLDSYATKT 638

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              K+A     +  ++++   T    ++L T  G+ + F  + +     RN+ GV+ ++L
Sbjct: 639 NRKKLANAYSDKSPLVAILKLTDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTL 698

Query: 730 A-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             K  +V    IV   +A+   +        A       +  +
Sbjct: 699 KAKNAKVEKAYIVSDEEAENLSKFRSKTIPVAGCLAKDLEDPD 741



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 10/180 (5%)

Query: 728 SLAKGDQVISM-AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            L +GD+++S       A+  +      +    A R   +  ++    +      +   +
Sbjct: 544 KLKEGDRMMSETESSNRAELLFFSDKASVYKSKASRFGNTKASDLGDYIPAVLGFDNGEA 603

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVAVF 845
                E       +L V E G   +     +   +NR          +  ++   LVA+ 
Sbjct: 604 FHTMVETMDYSGCLLFVFENGKAAKVPLDSYATKTNRKKL------ANAYSDKSPLVAIL 657

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEI-RIASRATKGVVIFSTA-KDERVVSVERIRESEIV 903
            + DN Q++L +  G  +      +    +R T+GV + +   K+ +V     + + E  
Sbjct: 658 KLTDNAQVMLRTTNGRALLFDTALLLPKTTRNTQGVQVMTLKAKNAKVEKAYIVSDEEAE 717


>gi|56159862|gb|AAV80742.1| gyrase subunit A [Bacillus sp. NRRL B-23935]
          Length = 270

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 165/270 (61%), Positives = 213/270 (78%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ R
Sbjct: 1   RALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG
Sbjct: 61  MAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           S +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME 
Sbjct: 121 SEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEY 180

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA 
Sbjct: 181 IPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKAR 240

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYR 309
           ++EKIA+LVR+K+I  I DLRDES R G R
Sbjct: 241 LIEKIADLVRDKKIEGITDLRDESARNGMR 270


>gi|37624494|gb|AAQ96043.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624496|gb|AAQ96044.1| DNA gyrase subunit A [Hafnia alvei]
 gi|37624498|gb|AAQ96045.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 246

 Score =  446 bits (1146), Expect = e-123,   Method: Composition-based stats.
 Identities = 148/238 (62%), Positives = 188/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K ARI G
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAEVE 238


>gi|37624524|gb|AAQ96058.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624526|gb|AAQ96059.1| DNA gyrase subunit A [Serratia plymuthica]
 gi|37624528|gb|AAQ96060.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 240

 Score =  445 bits (1145), Expect = e-122,   Method: Composition-based stats.
 Identities = 147/237 (62%), Positives = 187/237 (78%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH
Sbjct: 61  VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIAH 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EVV+
Sbjct: 121 ELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVVN 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           GC+A ID+ +I ++ LME I GPDFPT A+I GR GI+ AY TGRG + +R  + +E
Sbjct: 181 GCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYLRARAEVE 237


>gi|145633277|ref|ZP_01789008.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
 gi|144986123|gb|EDJ92713.1| DNA gyrase subunit A [Haemophilus influenzae 3655]
          Length = 267

 Score =  445 bits (1143), Expect = e-122,   Method: Composition-based stats.
 Identities = 152/268 (56%), Positives = 195/268 (72%), Gaps = 7/268 (2%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HNL EV++GC+A IDN +I +D LM+ I GPDFPT A+I GR GI+ A
Sbjct: 174 GIAVGMATNIPPHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEA 233

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVV 268
           Y TGRG + +R  + +E       ++  
Sbjct: 234 YRTGRGKVYVRARATVETNEKGASKLSC 261


>gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
           subunit [uncultured bacterium HF0010_16H03]
          Length = 701

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 211/679 (31%), Positives = 365/679 (53%), Gaps = 62/679 (9%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ++S +  L++GQGN+GS
Sbjct: 1   MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L K +  L+ +L   TVD++PN+DGS  EPV+  ++ P++L+N
Sbjct: 61  QD-DPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLN 119

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTG 236
           G  GIAVGMAT+IP+HN+ EV+D  + +++NP  +++ L++II+GPDF     +I  +  
Sbjct: 120 GTSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEE 179

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++  Y +GRG    +     EK +     IV+  +PYQ + + +LE+IA+ + +K+I  +
Sbjct: 180 LEEIYKSGRGGFKAQAHWVKEKNN-----IVINALPYQASGSKILEQIADQMLKKKIPMV 234

Query: 297 ADLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
            DL DE D  +  R+VI LK    +AD ++N L+  T LQ  + VNM  ++    P+ F+
Sbjct: 235 VDLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQGGPKVFS 294

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L+ ++K ++ FR+  V+R+ ++ L++  DR H+L GL I   +LD+V++IIR S  P+  
Sbjct: 295 LVEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKK- 353

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                                              LS++Q  AILE++L +L  L +  +
Sbjct: 354 ----------------------------DITKAFKLSDIQANAILEIKLRQLAKLEQIKL 385

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDED 531
             E ++L  E  E   IL+S++RL  +IK+ELL +KD     R++ I +        +ED
Sbjct: 386 EQERDALLEEQNEIEKILNSKTRLKTLIKKELLEIKDGFGEDRKSPIRQSSDAKVFSEED 445

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +V E + V +S  G++        R+ +      S +  R ED + D     ++   +F
Sbjct: 446 TLVTESITVVLSEAGWI--------RSAKGHEIDPSSLAYRGEDKLQDFCQGKSNQIAVF 497

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
             S G  Y      LP    +  G  +   +S + G +  + +   +      + +++  
Sbjct: 498 LDSNGKAYSLPSHSLPSA--RGMGDPITGRVSADSGVKFISTVIGNDI-----DKFMIMN 550

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN-DILLTTKLGQCVRFPI 710
           T  G    ++ S+ +   +SG+  MKL ++ E+L V    +++  I   + +G+ + F I
Sbjct: 551 TA-GYGYISEFSNMVSNKKSGRAFMKLPNKAELLKVIKVREDHVYIAAVSNIGRLLIFKI 609

Query: 711 SAIRVFAGRNSVGVRGISL 729
             + V       G + I++
Sbjct: 610 DELPVLG--KGKGNKIINI 626


>gi|269467763|gb|EEZ79527.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [uncultured SUP05 cluster bacterium]
          Length = 275

 Score =  444 bits (1141), Expect = e-122,   Method: Composition-based stats.
 Identities = 163/278 (58%), Positives = 209/278 (75%), Gaps = 3/278 (1%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+++   + E  E     V+I DEM++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M
Sbjct: 1   MSDNT-DNPEVFEPNFPIVTIEDEMRDSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G ++NK Y K ARI G+V+GKYHPHG+ A+YD + RMAQ +S+R +LI+GQGNFGSV
Sbjct: 60  EVLGNDYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSV 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +H LL DL KDTVDF  NYDGS  EP VL  R PN+LVNG  
Sbjct: 120 DGDSAAAMRYTEIRMAKISHELLRDLEKDTVDFIDNYDGSESEPSVLPTRVPNLLVNGSS 179

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP HN+ EV++ C+ VIDN ++ +D L++II GPDFPT  +I G  GI+ A
Sbjct: 180 GIAVGMATNIPPHNIDEVINACLLVIDNDEVSIDELLDIIHGPDFPTAGIINGADGIRQA 239

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
           Y TG+G I +R  SH+E    D++ IVVTE+PYQVNKA
Sbjct: 240 YETGKGKIYLRSRSHVE--GEDKQSIVVTELPYQVNKA 275


>gi|45386065|gb|AAS59850.1| GyrM [uncultured bacterium]
          Length = 306

 Score =  443 bits (1139), Expect = e-122,   Method: Composition-based stats.
 Identities = 174/301 (57%), Positives = 228/301 (75%), Gaps = 1/301 (0%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           +   I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM +     + Y
Sbjct: 6   DNDRIVKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMGINNVSTQPY 65

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KCAR+ GEV+GKYHPHG++++Y AL RMAQ+W++R  L++GQG FGSVDGD PAA RYT
Sbjct: 66  KKCARVVGEVLGKYHPHGDSSVYGALGRMAQEWNMRYTLVDGQGTFGSVDGDSPAAMRYT 125

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ECRL K    ++DDL K+TVD   N+D S  EP V+  + PN+LVNGG GIAVGMATN+P
Sbjct: 126 ECRLSKMGEHIMDDLDKETVDMVNNFDDSLVEPSVMPTKIPNLLVNGGNGIAVGMATNMP 185

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
           THNLGEV+DGC A IDNPDID D LM+ I GPDFPTGA I G  G+++AY TGRG IV+R
Sbjct: 186 THNLGEVIDGCCAYIDNPDIDTDGLMQYIPGPDFPTGAYIYGLAGVRDAYETGRGRIVMR 245

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE T    ++IVVTEIPY VNKA +++ IA+L  E +I  +A++ DES RQG R+V
Sbjct: 246 AKAEIESTET-HDKIVVTEIPYGVNKADLVKYIADLANEHKIEGVANVNDESGRQGMRIV 304

Query: 312 I 312
           +
Sbjct: 305 V 305


>gi|328957566|ref|YP_004374952.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673890|gb|AEB29936.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 325

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 164/325 (50%), Positives = 230/325 (70%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  G V+G 
Sbjct: 1   MGDRFGRYSKYIIQERALPDIRDGLKPVQRRILYAMNVEGNTSDKGFRKSAKTVGNVIGN 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++++Y+A+ R++Q+W  R +LIE  GN GS+DGDPPAA RYTE RL K +  L+ 
Sbjct: 61  YHPHGDSSVYEAMVRLSQNWKQREVLIEMHGNNGSMDGDPPAAMRYTEARLSKISAELVR 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TVDF  N+D + +EP V  A YPN+LVNG  GI+ G AT+IP HNLGEV+D  V 
Sbjct: 121 DIDKETVDFVLNFDDTDEEPTVFPASYPNLLVNGATGISAGYATDIPPHNLGEVIDATVH 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           +ID+PD  +  LM+ I+GPDFPTGA++ G  GIK AY TG+G I++R  + IE+  G +E
Sbjct: 181 LIDHPDASVSDLMQHIKGPDFPTGAILQGVAGIKQAYETGKGKIIVRSKTRIEEVRGGKE 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           QIV+ EIPY+VNKA ++ K+ E+   K++  IA++RDESDR G ++V+ELK+ A+A  IL
Sbjct: 241 QIVINEIPYEVNKAVLVRKMDEIRLNKKVDGIAEVRDESDRNGLQIVVELKKEANAKGIL 300

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKP 349
           N L + T LQ  ++ NMVA++  K 
Sbjct: 301 NYLLKNTDLQVAYNFNMVAIDKKKT 325


>gi|307069700|ref|YP_003878177.1| DNA gyrase subunit A [Candidatus Zinderia insecticola CARI]
 gi|306482960|gb|ADM89831.1| DNA gyrase A subunit [Candidatus Zinderia insecticola CARI]
          Length = 511

 Score =  441 bits (1135), Expect = e-121,   Method: Composition-based stats.
 Identities = 196/510 (38%), Positives = 312/510 (61%), Gaps = 14/510 (2%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M NSY+ YAINVI  RA+PD+ DGLKPVHRRIL+ M ++   +   ++KCARI GEVMGK
Sbjct: 1   MSNSYINYAINVISNRALPDIIDGLKPVHRRILYTMYKIKNNYKNNFIKCARIVGEVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IYDAL RMAQ++SL+  LI+GQGNFGS+DGD  AA RYTEC+L K ++    
Sbjct: 61  YHPHGDNSIYDALVRMAQNFSLKYTLIKGQGNFGSIDGDNAAAMRYTECKLNKISNEFFH 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ K+TV F  NYD   +EP+VL  R PN+L+NG  GIAVGM+TNIP HN  + ++  + 
Sbjct: 121 DINKNTVKFINNYDNKEKEPLVLPCRIPNLLINGSYGIAVGMSTNIPPHNFTDSINTAIY 180

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
           ++   +  +  L++I++ PDFPTG  I+  + + NAY  G+GS+ I      EK +    
Sbjct: 181 LLLFSECKIKDLIKILKAPDFPTGGNIIKISKLHNAYYYGKGSVTINSKFIFEKINKKTN 240

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I++TEIPYQ+NK  +LE+I +L++ K+I  I +L+DES++ G R+VIELK+  + + IL
Sbjct: 241 -IIITEIPYQINKKKILEQIIKLIKNKKINFINNLKDESNKLGIRIVIELKKNLNKNKIL 299

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L++ TSLQ   ++N++AL    P++  L  IL  F+ +R+++++++ K++L K + + 
Sbjct: 300 KILFKKTSLQHTININIIALIKNIPKKLNLKKILIYFIKYRKKLIIKKLKFILKKLKKKK 359

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA---------SDIKDLIDLID 435
           ++L G  + + N+++ ++I++ S N   A + +   +W           +          
Sbjct: 360 YLLEGFVVVINNINKFIKIVKKSKNNIEAIKNITSNNWKLFIKLKIINFNKKNKKYIKNI 419

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                I       +S +Q++ +L+LRL ++  L    I  +   + I+I     IL  ++
Sbjct: 420 KKKIKIPYTKKYKISVIQSKLVLKLRLNKIIKLESYKIFKKYKLIIIKILIYFIILKKKN 479

Query: 496 RLLGIIKQELLSVKD----ELDTPRRTRIV 521
           ++  +I +EL  +K     +    R T I 
Sbjct: 480 KIYDVIFEELNYIKYNTKIKNKDIRLTNIN 509


>gi|37624500|gb|AAQ96046.1| DNA gyrase subunit A [Hafnia alvei]
          Length = 242

 Score =  441 bits (1133), Expect = e-121,   Method: Composition-based stats.
 Identities = 147/234 (62%), Positives = 185/234 (79%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K ARI G+V+G
Sbjct: 1   ELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARIVGDVIG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL
Sbjct: 61  KYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELL 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            DL K+TVDF PNYDG+ Q P VL  + PN+LVNG  GIAVGMATNIP HNL EV++GC+
Sbjct: 121 ADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNLNEVINGCL 180

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           A ID+ +I ++ LM+ I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 AYIDDENITVEGLMQHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRAKAEVE 234


>gi|37624502|gb|AAQ96047.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624504|gb|AAQ96048.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624506|gb|AAQ96049.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624508|gb|AAQ96050.1| DNA gyrase subunit A [Klebsiella oxytoca]
 gi|37624510|gb|AAQ96051.1| DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 246

 Score =  439 bits (1128), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/238 (59%), Positives = 186/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ++N DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYVENEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|121591636|ref|ZP_01678880.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
 gi|121546507|gb|EAX56720.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 2740-80]
          Length = 367

 Score =  438 bits (1126), Expect = e-120,   Method: Composition-based stats.
 Identities = 158/370 (42%), Positives = 238/370 (64%), Gaps = 12/370 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAF 361
            +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 355

Query: 362 VAFREEVVVR 371
           ++FR +    
Sbjct: 356 ISFRRKRYAH 365


>gi|37624482|gb|AAQ96037.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624484|gb|AAQ96038.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624486|gb|AAQ96039.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624488|gb|AAQ96040.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624490|gb|AAQ96041.1| DNA gyrase subunit A [Escherichia coli]
 gi|37624492|gb|AAQ96042.1| DNA gyrase subunit A [Escherichia coli]
          Length = 246

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 143/238 (60%), Positives = 187/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|313625788|gb|EFR95409.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           J1-023]
          Length = 262

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 147/259 (56%), Positives = 194/259 (74%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IPTH+LGEV+DG +A+  +P+I +  LME I GPDFPT  +I+GR+GI+ AY +GRGSI 
Sbjct: 183 IPTHHLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIMGRSGIRRAYESGRGSIT 242

Query: 250 IRGVSHIEKTSGDREQIVV 268
           +RG   IE+    +E  V 
Sbjct: 243 VRGRVDIEEKKNGKETEVT 261


>gi|37624512|gb|AAQ96052.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624514|gb|AAQ96053.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624516|gb|AAQ96054.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624518|gb|AAQ96055.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624520|gb|AAQ96056.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|37624522|gb|AAQ96057.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 246

 Score =  438 bits (1125), Expect = e-120,   Method: Composition-based stats.
 Identities = 142/238 (59%), Positives = 186/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A +D+ DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYVDDEDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|37624462|gb|AAQ96027.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624464|gb|AAQ96028.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624466|gb|AAQ96029.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624468|gb|AAQ96030.1| DNA gyrase subunit A [Citrobacter freundii]
 gi|37624470|gb|AAQ96031.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 246

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 144/238 (60%), Positives = 186/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E
Sbjct: 181 NGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVE 238


>gi|218658940|ref|ZP_03514870.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 223

 Score =  436 bits (1122), Expect = e-120,   Method: Composition-based stats.
 Identities = 169/222 (76%), Positives = 200/222 (90%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH L
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSL 121

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           LDDL K+TVDFR NYDG+  EPVV+ A++PN+LVNG GGIAVGMATNIP HNL EV+DGC
Sbjct: 122 LDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGC 181

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           +A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TG
Sbjct: 182 IALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETG 223


>gi|37624472|gb|AAQ96032.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624474|gb|AAQ96033.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624476|gb|AAQ96034.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624478|gb|AAQ96035.1| DNA gyrase subunit A [Enterobacter cloacae]
 gi|37624480|gb|AAQ96036.1| DNA gyrase subunit A [Enterobacter cloacae]
          Length = 246

 Score =  435 bits (1119), Expect = e-119,   Method: Composition-based stats.
 Identities = 142/238 (59%), Positives = 187/238 (78%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ EV+
Sbjct: 121 HELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVI 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +GC+A I++ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG I IR  + +E
Sbjct: 181 NGCLAYIEDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYIRARAEVE 238


>gi|110554877|gb|ABG75545.1| GyrA [Klebsiella pneumoniae]
          Length = 250

 Score =  435 bits (1118), Expect = e-119,   Method: Composition-based stats.
 Identities = 150/250 (60%), Positives = 191/250 (76%), Gaps = 1/250 (0%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A +D+
Sbjct: 121 ETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLTEVINGCLAYVDD 180

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIV 267
            DI ++ LM  I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE I+
Sbjct: 181 EDISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKSGRETII 240

Query: 268 VTEIPYQVNK 277
           V EIPYQVNK
Sbjct: 241 VHEIPYQVNK 250


>gi|309807645|ref|ZP_07701587.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308169111|gb|EFO71187.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 369

 Score =  433 bits (1114), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/364 (45%), Positives = 240/364 (65%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           ++ +  + I  + + + M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  +
Sbjct: 2   TNTKINERIKEMPLEEVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYAMYKDGNTF 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G VMG +HPHG+++IY AL  ++QDW +R  LIE  GN GS+DGD PAA
Sbjct: 62  DKAYKKAAKAVGNVMGNFHPHGDSSIYGALVHLSQDWKMRQTLIEMHGNNGSMDGDGPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K ++ LL D+ KDTV    N+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTESRLSKISNLLLKDIDKDTVQMVLNFDDTEYEPTVLPAHFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP HNL EV+D  + +I +PD  +D LM  I+GPDFPTG +I+G  GIK+AY TGRG 
Sbjct: 182 TEIPPHNLSEVLDALIYLIKHPDAKIDELMTYIKGPDFPTGGLIIGNQGIKDAYETGRGR 241

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I +R  + I+ T G + QIV+TEIP+ VNKA +++KI E+   K +  I ++RDE+DR G
Sbjct: 242 IQVRAKTKIKVTKGQKPQIVITEIPFGVNKAMLVKKIDEIRLNKDVDGITEVRDETDRHG 301

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
             +VIELK+   ++ ILN L++ T LQ  ++ NMVA++   P +  L  IL +++  ++ 
Sbjct: 302 LSIVIELKKEVDSENILNYLFKSTDLQISYNFNMVAIDHMAPVQLGLKRILSSYLEHKKR 361

Query: 368 VVVR 371
             ++
Sbjct: 362 RCIK 365


>gi|13810771|gb|AAK40030.1|AF272020_1 DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 270

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 166/270 (61%), Positives = 217/270 (80%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELK 315
           +LVR+K+I  I DLRDESDR G R+VIE++
Sbjct: 241 DLVRDKKIEGITDLRDESDRTGMRIVIEIR 270


>gi|153820158|ref|ZP_01972825.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
 gi|126509298|gb|EAZ71892.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae NCTC 8457]
          Length = 343

 Score =  433 bits (1112), Expect = e-118,   Method: Composition-based stats.
 Identities = 152/342 (44%), Positives = 225/342 (65%), Gaps = 11/342 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEISFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL 344
            +   R+VI  +      D+++N L+  T L+  F VN+  +
Sbjct: 296 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMI 337


>gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 303

 Score =  431 bits (1108), Expect = e-118,   Method: Composition-based stats.
 Identities = 144/287 (50%), Positives = 196/287 (68%), Gaps = 1/287 (0%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M +MG+     + KCA+I GE
Sbjct: 1   LKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGE 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++DGD PAA RYTE ++   + 
Sbjct: 61  VMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSE 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL+ + +D VDFR  YD S  EPVVL   +PN+L NG  GIAVGMAT+IP+HN  E+ D
Sbjct: 121 LLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD 180

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
             + +I +PD  ++ L+E I GPDFPTG  +I  R  I  +Y TGRG   +R     E  
Sbjct: 181 AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDL 240

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
                QIV+TEIP+QV K+ ++EKIAEL+  +++  + D+RDES   
Sbjct: 241 GRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAED 287


>gi|323694736|ref|ZP_08108894.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501173|gb|EGB17077.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 347

 Score =  431 bits (1107), Expect = e-118,   Method: Composition-based stats.
 Identities = 150/323 (46%), Positives = 220/323 (68%), Gaps = 7/323 (2%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I +   ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIITTEYSEEMQRSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELRLGSDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAEEVYLKDLDK-TVPFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNLGEVVD  +A IDNP+     L++I+ GPDFPTG +I  ++ + N Y TG G I +R 
Sbjct: 182 HNLGEVVDTVMAYIDNPECTTKELLDILHGPDFPTGGIIANKSDLLNIYETGSGRIKLRA 241

Query: 253 VSHIE--KTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQG 307
              +E  K   D+++++++EIPY +  A + +    IA+LV  K++ D+ D+ ++S+++G
Sbjct: 242 KLEVELGKRRVDKDKLIISEIPYTMIGAGINKCLVDIADLVESKKLTDVVDISNQSNKEG 301

Query: 308 YRVVIELKRGASADVILNQLYRY 330
            R+V+ELK+ A  + I N LY+ 
Sbjct: 302 IRIVLELKKDADIEKIKNILYKK 324


>gi|284097496|ref|ZP_06385583.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830992|gb|EFC35015.1| DNA gyrase subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 250

 Score =  429 bits (1104), Expect = e-118,   Method: Composition-based stats.
 Identities = 146/236 (61%), Positives = 183/236 (77%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           E+  T V+I DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRRIL+GM QMG+  N+ Y 
Sbjct: 4   EERFTQVAIEDEMRLSYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMNQMGLAHNRAYR 63

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+I GE+MG YHPHG++AIYDAL RMAQD+++R  L++GQGN+GSVDGDPPAA RYTE
Sbjct: 64  KSAKIVGEIMGNYHPHGDSAIYDALVRMAQDFNMRYTLVDGQGNYGSVDGDPPAAMRYTE 123

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  +L D+ K+TVDF P YD S  EP+VL A+ PN+L+NG GGIAVG ATNIPT
Sbjct: 124 ARLTKLAGEMLADIDKETVDFGPTYDESDVEPLVLPAKLPNLLLNGAGGIAVGYATNIPT 183

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           HNLGEVV   + V++NP   L  LM++I GPDFPT   I G  GI++AY  G G++
Sbjct: 184 HNLGEVVTALLYVLENPAATLPELMDMIPGPDFPTAGFIYGTQGIRDAYEHGAGAV 239


>gi|222137880|gb|ACM45453.1| DNA gyrase subunit A [Aeromonas fluvialis]
          Length = 235

 Score =  428 bits (1100), Expect = e-117,   Method: Composition-based stats.
 Identities = 137/226 (60%), Positives = 180/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  I GPDFPTG +I GR+GI  AY TGRGS+ +R  + +E
Sbjct: 181 TIDELMTYITGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|226201191|gb|ACO37588.1| DNA gyrase subunit A [Aeromonas sanarellii]
          Length = 235

 Score =  426 bits (1096), Expect = e-117,   Method: Composition-based stats.
 Identities = 134/226 (59%), Positives = 179/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + P +LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  + GPDFPTG +I GR+GI  AY TGRGS+ +R  + +E
Sbjct: 181 TIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|226201187|gb|ACO37586.1| DNA gyrase subunit A [Aeromonas taiwanensis]
          Length = 235

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 135/226 (59%), Positives = 179/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + P +LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N D+
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGDL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  + GPDFPTG +I GR+GI  AY TGRGSI +R  + +E
Sbjct: 181 TIDELMTHVTGPDFPTGGIINGRSGIVQAYRTGRGSIYVRAKAEVE 226


>gi|270160515|gb|ACZ63223.1| DNA gyrase subunit A [Aeromonas rivuli]
 gi|270160519|gb|ACZ63225.1| DNA gyrase subunit A [Aeromonas rivuli]
          Length = 235

 Score =  426 bits (1095), Expect = e-117,   Method: Composition-based stats.
 Identities = 136/226 (60%), Positives = 180/226 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R ++++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMMVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I+N  +
Sbjct: 121 DWVPNYDGTELIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALIENGSL 180

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +D LM  I GPDFPTGA+I GR+GI  AY TGRGS+ +R  + +E
Sbjct: 181 TIDELMTYISGPDFPTGAIINGRSGIVQAYRTGRGSVYVRAKAEVE 226


>gi|37624530|gb|AAQ96061.1| DNA gyrase subunit A [Serratia plymuthica]
          Length = 215

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 136/214 (63%), Positives = 172/214 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL EVV
Sbjct: 121 HELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLAEVV 180

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +GC+A ID+ +I ++ LME I GPDFPT A+I G
Sbjct: 181 NGCLAYIDDENISIEGLMEHIPGPDFPTAAIING 214


>gi|284803502|emb|CBJ16551.2| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 262

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 160/262 (61%), Positives = 207/262 (79%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ 
Sbjct: 1   DGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNY 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDG+ +EPVV
Sbjct: 61  RYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           + +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I    LME I GPDFP
Sbjct: 121 MPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFP 180

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 181 TAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIAD 240

Query: 287 LVREKRIVDIADLRDESDRQGY 308
           LVR+K+I  I DLRDESDR G 
Sbjct: 241 LVRDKKIEGITDLRDESDRNGM 262


>gi|13810765|gb|AAK40027.1|AF272017_1 DNA gyrase subunit A [Bacillus licheniformis]
          Length = 285

 Score =  426 bits (1094), Expect = e-116,   Method: Composition-based stats.
 Identities = 173/285 (60%), Positives = 225/285 (78%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSV
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSV 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  
Sbjct: 61  DGDSAAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAA 120

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ A
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKA 180

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y TGRGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 181 YETGRGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLR 240

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           DESDR G R+VIEL+R A+A+V+LN LY+ T+LQ+ F +N++AL 
Sbjct: 241 DESDRNGMRIVIELRRDANANVLLNNLYKQTALQTSFGINLLALV 285


>gi|163803901|ref|ZP_02197741.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
 gi|159172300|gb|EDP57188.1| DNA topoisomerase IV subunit A [Vibrio sp. AND4]
          Length = 332

 Score =  425 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/337 (44%), Positives = 224/337 (66%), Gaps = 11/337 (3%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TVD++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATG 244
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT   +I  +  I+  Y +G
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRSG 240

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R V H E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDESD
Sbjct: 241 RGSIKMRAVWHKEGSD-----IVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESD 295

Query: 305 RQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
            +   R+V+  K      D+++N L+  T L+  + V
Sbjct: 296 HENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRV 332


>gi|13810769|gb|AAK40029.1|AF272019_1 DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  424 bits (1091), Expect = e-116,   Method: Composition-based stats.
 Identities = 161/260 (61%), Positives = 207/260 (79%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++
Sbjct: 1   RDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFN 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPV
Sbjct: 61  YRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           V+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDF
Sbjct: 121 VMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDF 180

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA
Sbjct: 181 PTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIA 240

Query: 286 ELVREKRIVDIADLRDESDR 305
           +LVR+K+I  I DLRDESDR
Sbjct: 241 DLVRDKKIEGITDLRDESDR 260


>gi|289672551|ref|ZP_06493441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 345

 Score =  423 bits (1086), Expect = e-116,   Method: Composition-based stats.
 Identities = 149/355 (41%), Positives = 222/355 (62%), Gaps = 15/355 (4%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+NG
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNG 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGI 237
             GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R  +
Sbjct: 176 TTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADL 235

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  +A
Sbjct: 236 LKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVA 290

Query: 298 DLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           DLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +      
Sbjct: 291 DLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKP 345


>gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
 gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3]
          Length = 456

 Score =  421 bits (1083), Expect = e-115,   Method: Composition-based stats.
 Identities = 191/491 (38%), Positives = 284/491 (57%), Gaps = 43/491 (8%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+N
Sbjct: 61  PD-DPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLN 119

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTG 236
           G  GIAVGMAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     
Sbjct: 120 GVTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVE 179

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           ++  Y +GRGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  +
Sbjct: 180 LEKIYRSGRGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMV 234

Query: 297 ADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFT 353
            DLRDESD +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   
Sbjct: 235 EDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKG 294

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           L+ IL  +++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   
Sbjct: 295 LVQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP--- 351

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
           +  LM R                            L+++Q  AIL+ +L  L  L    I
Sbjct: 352 KAVLMAR--------------------------FDLTDIQADAILDTKLRHLAKLEEMKI 385

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDED 531
           R E + L  E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D
Sbjct: 386 RGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERD 445

Query: 532 CIVREDMVVTV 542
            +  E + V +
Sbjct: 446 LMPSEAITVVL 456


>gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis]
          Length = 386

 Score =  421 bits (1082), Expect = e-115,   Method: Composition-based stats.
 Identities = 164/374 (43%), Positives = 235/374 (62%), Gaps = 12/374 (3%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +
Sbjct: 1   IGDGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +L + TVD+ PN+DG+ Q
Sbjct: 61  SYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQ 119

Query: 163 EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRG 222
           EP +L AR PN+L+NG  GIAVGMAT+IP HN+ E+    +A+ID P   LD L+E ++G
Sbjct: 120 EPKMLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQG 179

Query: 223 PDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
           PDFPT   +I  R  I+  Y  GRGS+ +R V   E  S      V+T +P+QV+ A +L
Sbjct: 180 PDFPTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKEDGSA-----VITALPHQVSGAKVL 234

Query: 282 EKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSV 339
           E+IA  +R K++  + DLRDESD +   R+VI  +      D +++ L+  T L+  + +
Sbjct: 235 EQIANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRI 294

Query: 340 NMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           NM  +    +P    L+ IL  ++ FR + V  R  + L K   R H+L GL IA  N+D
Sbjct: 295 NMNMIGLDNRPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNID 354

Query: 399 EVVRIIRFSPNPET 412
           EV+ IIR   +P+ 
Sbjct: 355 EVIHIIRTEDDPKP 368


>gi|13810763|gb|AAK40026.1|AF272016_1 DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 290

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 170/290 (58%), Positives = 226/290 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 1   MNDLGMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDIPIQELMEFIPGPDFPTAGQILGRSGIRK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 181 AYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           RDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL   +P
Sbjct: 241 RDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLALVDGEP 290


>gi|317498961|ref|ZP_07957244.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893794|gb|EFV15993.1| topoisomerase IV [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 323

 Score =  420 bits (1080), Expect = e-115,   Method: Composition-based stats.
 Identities = 142/321 (44%), Positives = 205/321 (63%), Gaps = 6/321 (1%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            + I     ++ MQ SY+ YA++VI  RA+PD RDGLKPV RR+L+ M ++G+ +++ + 
Sbjct: 2   SEHIIKAEFSEVMQKSYIDYAMSVICARALPDARDGLKPVQRRVLYSMDELGLRYDRPHR 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+ MGKYHPHG+++IY++L  M+QD+   + L++G GNFGS++GD  AA RYTE
Sbjct: 62  KSARIVGDTMGKYHPHGDSSIYESLVVMSQDFKKGVPLVDGHGNFGSIEGDGAAAMRYTE 121

Query: 133 CRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
            RLQK      L DL K+ VDF  N+D + +EP VL  + PN+LVNG  GIAVGM T+IP
Sbjct: 122 ARLQKITQEAYLADLDKNVVDFVSNFDETEKEPEVLPVKVPNLLVNGADGIAVGMTTSIP 181

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEVVD   A +    I  + LME I GPDFPTG +++ +  + N Y++G G + +R
Sbjct: 182 PHNLGEVVDAVKAYMRKESITNEELMEYIEGPDFPTGGLVINKKDLLNIYSSGTGKLKLR 241

Query: 252 GVSHIEKTSGDRE--QIVVTEIPYQV---NKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           G    E      E  ++V++EIPY +   N +  L     L+  K   DI D+ +ES + 
Sbjct: 242 GKVTFEPAKKRGEKDKLVISEIPYTMIGNNISKFLSDTVALIENKVTTDILDISNESSKD 301

Query: 307 GYRVVIELKRGASADVILNQL 327
           G R+V+EL++GA  + +   L
Sbjct: 302 GIRIVLELRKGADVERLKKSL 322


>gi|319826936|gb|ADV74762.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 279

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 167/279 (59%), Positives = 223/279 (79%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GN
Sbjct: 1   LYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           FGSVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LV
Sbjct: 61  FGSVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLV 120

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
           NG  GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+G
Sbjct: 121 NGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSG 180

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           I+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I
Sbjct: 181 IRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGI 240

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS 335
            DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+
Sbjct: 241 TDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQT 279


>gi|84994460|ref|XP_951952.1| topoisomerase IV subunit A [Theileria annulata strain Ankara]
 gi|65302113|emb|CAI74220.1| topoisomerase IV subunit A, putative [Theileria annulata]
          Length = 993

 Score =  419 bits (1077), Expect = e-114,   Method: Composition-based stats.
 Identities = 215/911 (23%), Positives = 392/911 (43%), Gaps = 99/911 (10%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
            + +E++ +  + + D M +S+L YA+++ILGRA+PD RDGLK VHRRI++ M  + ++ 
Sbjct: 91  ENYDEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDP 150

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N +Y KCA++ G+V+G YHPHG+ ++YDAL R++QD+ +++ LI+G GNFGS + DPPAA
Sbjct: 151 NGQYRKCAKVVGDVLGNYHPHGDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAA 209

Query: 128 ERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   +   +L+D+  +T+D+ PN+D +  EP+VL  R PN+L+NG  GIAVG+
Sbjct: 210 MRYTECRLTNFSKTVMLNDINFNTIDYTPNFDNTNIEPMVLPCRLPNILINGSSGIAVGL 269

Query: 187 ATNIPTHNLGEVVDGCVAV-------------IDNPDIDLD--------ALMEIIRGPDF 225
           ATNIP HN  E+++  +                   D  +D         ++  + GPDF
Sbjct: 270 ATNIPPHNPAEIINATIQYIKYILYIDIIHRSHLKTDATVDDVNGDKSAEVVNEVLGPDF 329

Query: 226 PTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           PTG VI   R  ++  Y +G+G+++I+     E+       IV+ +IPY      ++E I
Sbjct: 330 PTGGVIRTTREAMRKIYESGKGTVLIQSRFVFEEKLR--ISIVINQIPYNTRINDIIENI 387

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQS--LFSVNMV 342
              ++   I+ + D++DESDR G R+V+ELKR  S+ + + ++       +   ++ N +
Sbjct: 388 NRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMTKLERLTEYNYNCNFI 447

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            L+  +P RF+L  ILK ++ FR EV+ R+ K+LL K +    ++        N++ ++ 
Sbjct: 448 TLDQDRPIRFSLSSILKIWLNFRLEVLKRKYKHLLLKFKKNLDIINAYITVYLNINTIIN 507

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
             +                     +  L+                 L++ Q ++++ L L
Sbjct: 508 SFQNHH----------------KGVYKLLK------------EEFKLNDDQMKSVMRLTL 539

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-PRRTRIV 521
            +L  L  +++  +      +I+   +IL + + L   I  +L  +++      R T I+
Sbjct: 540 RQLNQLNIENLNEKSAEYTKQIEFYENILKNDNNLYSEIISDLTELREHFKNIKRNTLII 599

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                   E+ I  E      +  G V    +          +      ++ +       
Sbjct: 600 YTDEPNSFENTIEGE--GAEGNTDGKVG-SVVESDDNIIIYNRLGRISKIKLDKKFYKSN 656

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
              T  +     +      E   +    S +   K  +N +   +   +          S
Sbjct: 657 KNKTLNTPNPVHTHSTSPDESQDKAETPSVKKSAKKSLNKIDETEALEVG-------YCS 709

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDIL 697
           + N+  ++   K+G +     S      +   I     +  D   E ++       + I+
Sbjct: 710 NNNSNKIMMIMKNGRIFHVNSSKLKLCKKGYDIFKYLGINNDQLIEYVTSTGKNIGDIIM 769

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           +    G    F    +     +  + ++  +L   +        L             K 
Sbjct: 770 VGYGSGVMSVFNAKKLNFKLSKTRLNLKL-NLKDKEIRFFFNCTLDHILQNPFLFICTKR 828

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ-FILTVSEKG--------- 807
               +  +    E+    KN   +     +E        +Q  IL ++ KG         
Sbjct: 829 GYCIKINLKNIIEKFDKKKNLRLIRMYKGDELASSCLTNDQGHILILTSKGNSNHHNNCI 888

Query: 808 --FGKRTSSYDFRISNRSGKGIRATD-----VSKINEIG------ALVAVFPVN---DND 851
             + K  +  D ++    GKG          + K            +V    V+   +  
Sbjct: 889 GRY-KLINVSDIKLQRIKGKGYNILRNKQKLIKKAESEDSEANLENVVTCTNVDNIKEKK 947

Query: 852 QIILVSDKGTL 862
            I+L+S  G L
Sbjct: 948 NILLISKGGVL 958


>gi|210630763|ref|ZP_03296587.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
 gi|210160359|gb|EEA91330.1| hypothetical protein COLSTE_00472 [Collinsella stercoris DSM 13279]
          Length = 746

 Score =  418 bits (1074), Expect = e-114,   Method: Composition-based stats.
 Identities = 211/771 (27%), Positives = 349/771 (45%), Gaps = 54/771 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +T+  IT  ++ +Y+ YA++  + RA P++ DG KP HR++L+ M +MG+   ++  
Sbjct: 24  HSEVTAQPITKTLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-Q 81

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV-DGD-PPAAER 129
           K A I G+ M K +PHG+AAIY+ + R+A  + +L    +E +GNFG    GD   AA R
Sbjct: 82  KSANIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L      +  D+ KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++
Sbjct: 141 YTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASD 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSI 248
           I   NL EV    +  +++P  DL   M     PDF TG  I+  R  ++    TG GS 
Sbjct: 201 ICGFNLNEVCTATMHYLEDPSCDLLEYM---PMPDFSTGGEIIYRREEMERIIETGLGSF 257

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR              I V EIPY      ++++I +L +E ++ +IAD+RDE+D  G 
Sbjct: 258 QIRSRWRWVPEER---IIEVYEIPYTTKTDVIIDRIVKLSKEGKVREIADIRDETDLSGL 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+LKRG   + ++ +LYR T+LQ  FS N   L    P    +  IL  +VA+R + 
Sbjct: 315 RIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGYPRVMGVRQILHEWVAWRVQS 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR  + L K  +R H+L GL   + ++D+ + IIR +         LM+         
Sbjct: 375 TRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMK--------- 425

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + E Q   + EL+L  +      +   ++  L  EI E  
Sbjct: 426 -----------------GFDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELE 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLG 546
           +ILSS   +  +I+ EL +V  +   PRRT  +E    +    E  I    + + +S  G
Sbjct: 469 EILSSEDNIKKVIRDELAAVNKKYVMPRRTGRIEPSDVIEVSLEPEIEEYPVTIMLSREG 528

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K       +   R  K  + +  +D D     F  +    +L F++   VYK KV   
Sbjct: 529 YLK-------KMTDRVLKKAAALKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAF 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L   L +   E +   +   +         V+F  ++G   R  L+ ++
Sbjct: 582 EDTKSAQLGSYLPTDLEMEPDESVIWAIDPEDY-----KADVLFIFENGRAVRVALAGYV 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 ++   +    ++L  +   ++ DI L +   + + F  S ++     N+ GV+ 
Sbjct: 637 TKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMSFNTSLLKTKTTTNTQGVQA 696

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            +  KG +VI+                     S          +++ SL +
Sbjct: 697 FTAKKG-RVITTVSTAEEVLGAGVSAEKFTAQSLPCAGALMKEDDMPSLFD 746


>gi|145642255|ref|ZP_01797821.1| DNA gyrase subunit A [Haemophilus influenzae R3021]
 gi|145273060|gb|EDK12940.1| DNA gyrase subunit A [Haemophilus influenzae 22.4-21]
          Length = 566

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 230/584 (39%), Positives = 340/584 (58%), Gaps = 36/584 (6%)

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           ++LN LY  T +Q  F +NMVAL+  +P  F L  I+++FV  R EVV RR+ + L KAR
Sbjct: 1   MVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKAR 60

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID---LIDDS 437
           +R H+L GLA+A +N+DE++ IIR S N E A   +  RSW   SDI +L+D     D+ 
Sbjct: 61  ERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDIINLLDVSARPDEL 120

Query: 438 SYTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
              +G  G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  R
Sbjct: 121 EENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAER 180

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I++EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y
Sbjct: 181 LMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDY 240

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
            AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+
Sbjct: 241 EAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGR 300

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            ++NIL L + ERIT I+P    E    + +VV AT  G V++  L++F +   +G IA+
Sbjct: 301 PIVNILPLQENERITAILPVSAYE---EDKFVVMATAGGIVKKIALTEFSRPRSNGIIAL 357

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI LA      
Sbjct: 358 NLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA------ 410

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
                                        + + E+I+    ++S++ NI +     +   
Sbjct: 411 -------------------LTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKG 451

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ILT ++ G+GKRT   ++   +R+ KG+ +  VS+ N  G +VA   V + DQI+L+
Sbjct: 452 EGAILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLI 509

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +D GTL+R  V+E+ I  R T+GV +  TA DE VVS+ER+ ++
Sbjct: 510 TDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHVVSLERVCDA 553


>gi|229815926|ref|ZP_04446249.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
 gi|229808479|gb|EEP44258.1| hypothetical protein COLINT_02981 [Collinsella intestinalis DSM
           13280]
          Length = 746

 Score =  417 bits (1072), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/770 (26%), Positives = 351/770 (45%), Gaps = 53/770 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
              +T+  IT+ ++ +Y+ YA++  + RA P++ DG KP HR++L+ M +MG+   ++  
Sbjct: 24  HSEVTAQPITETLETNYMPYAMSTNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-Q 81

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV-DGD-PPAAER 129
           K A I G+ M K +PHG+AAIY+ + R+A  + +L    +E +GNFG    GD   AA R
Sbjct: 82  KSANIVGQTM-KLNPHGDAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLTYAASR 140

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE +L      +  D+ KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++
Sbjct: 141 YTEAKLSPICAEIFKDIDKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASD 200

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSI 248
           I   NL EV    +  +++P  DL   M     PDF TG  I+ R   ++    TG GS 
Sbjct: 201 ICGFNLNEVCTATMHFLEDPSCDLLEYM---PMPDFSTGGEIIYRREEMERIIETGLGSF 257

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR              I V EIPY      ++++I +L +E ++ +IAD+RDE+D  G 
Sbjct: 258 QIRSRWRWVPEER---IIEVYEIPYTTKTDIIIDRIIKLSKEGKVREIADIRDETDLSGL 314

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+ I+LKRG   + ++ +LYR T+LQ  FS N   L    P    +  IL  +VA+R + 
Sbjct: 315 RIAIDLKRGVDPEKLMAKLYRTTTLQDSFSCNFNVLVDGYPRVMGVRQILHEWVAWRIQS 374

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             RR  + L K  +R H+L GL   + ++D+ + IIR +         LM          
Sbjct: 375 TRRRVNFDLGKKSERLHLLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLM---------- 424

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               + E Q   + EL+L  +      +   ++  L  EI E  
Sbjct: 425 ----------------RGFDIDETQAEFVAELKLRNINEEYILNRTKDIAKLEAEIAELE 468

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLG 546
           +ILSS   +  +I+ EL +V  +   PRRT  +E    +    E  +    + + +S  G
Sbjct: 469 EILSSEDNIKKVIRDELAAVNKKYVMPRRTGRIEPSDVIEVSLEPEVEEYPVTIMLSREG 528

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           Y+K++   V R         + +  +D D     F  +    +L F++   VYK KV   
Sbjct: 529 YLKKMTDRVLR-------KAAELKYKDGDEPFIEFPSANTHELLVFTNKSQVYKCKVAAF 581

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                   G  L   L ++  E +  ++   +         V+F  ++G   R  L+ ++
Sbjct: 582 EDTKSAQLGSYLATDLEMDPDESVIWVIDPEDY-----KADVLFVFENGRAVRVALAGYV 636

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                 ++   +    ++L  +   ++ DI L +   + + F  S ++     N+ GV+ 
Sbjct: 637 TKTNRKRLKNAIYGGSKLLYAQVLKEDRDIALVSSDYRLMNFNTSLLKTKTTTNTQGVQA 696

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +  KG  V +++ V            +          +  + +  +   
Sbjct: 697 FTAKKGRVVTTVSTVEEVLGAGVSAEKFTAQSLPCAGALMKEDDMPSLFD 746


>gi|311033952|gb|ADP55402.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 285

 Score =  417 bits (1071), Expect = e-114,   Method: Composition-based stats.
 Identities = 169/285 (59%), Positives = 224/285 (78%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGS
Sbjct: 1   MNDLGMSSDKVYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGA 120

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ 
Sbjct: 121 AGIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRK 180

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY +GRGSI IR  + IE+T   +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DL
Sbjct: 181 AYESGRGSITIRAKAEIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDL 240

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
           RDESDR G R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 241 RDESDRNGMRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 285


>gi|199612847|gb|ACH91611.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 228

 Score =  415 bits (1067), Expect = e-113,   Method: Composition-based stats.
 Identities = 136/228 (59%), Positives = 177/228 (77%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y
Sbjct: 1   SVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           +++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D++
Sbjct: 61  ESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQ 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
            NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I   
Sbjct: 121 DNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITNQ 180

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
            LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  
Sbjct: 181 ELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSG 228


>gi|331678180|ref|ZP_08378855.1| DNA gyrase subunit A [Escherichia coli H591]
 gi|331074640|gb|EGI45960.1| DNA gyrase subunit A [Escherichia coli H591]
          Length = 542

 Score =  414 bits (1065), Expect = e-113,   Method: Composition-based stats.
 Identities = 211/578 (36%), Positives = 328/578 (56%), Gaps = 67/578 (11%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           MVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LA+A+AN+D +
Sbjct: 1   MVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPI 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEV 452
           + +IR +P P  A+  L+   W   ++  +++   D +             DG  YL+E 
Sbjct: 61  IELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQ 120

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++EL  V+++ 
Sbjct: 121 QAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 180

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   ++
Sbjct: 181 GDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK 240

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           +EDF+  L + +TH  +L FSS G VY  KV++LP  +  ARG+ ++N+L L Q ERIT 
Sbjct: 241 EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITA 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  E E     + V  AT +G V++  L++F ++  +GK+A+KL   DE++ V+  + 
Sbjct: 301 ILPVTEFE---EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 357

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
           E++++L +  G+ VRF  S++R   G N+ GVRGI L +GD+V+S+ +     A      
Sbjct: 358 EDEVMLFSAEGKVVRFKESSVRAM-GCNTTGVRGIRLGEGDKVVSLIVPRGDGA------ 410

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                          ILT ++ G+GKRT
Sbjct: 411 -----------------------------------------------ILTATQNGYGKRT 423

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
           +  ++   +R+ KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I
Sbjct: 424 AVAEYPTKSRATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISI 481

Query: 873 ASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
             R T+GV++  TA+DE VV ++R+ E    ++ ++ +
Sbjct: 482 VGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTID 519



 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 15/243 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  GK    +V  DE    DL   S    V+ FS+ G 
Sbjct: 312 KVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDL--TSGEDEVMLFSAEGK 369

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +            +  + L +G+++ +++          +  ++ AT++G  
Sbjct: 370 VVRFKESSVRAM---GCNTTGVRGIRLGEGDKVVSLI------VPRGDGAILTATQNGYG 420

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  ++++   +R+ K  + +   +     +        + I++ T  G  VR  +S I 
Sbjct: 421 KRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 479

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     + D              +      +   
Sbjct: 480 SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEP 539

Query: 775 LKN 777
            + 
Sbjct: 540 EEE 542


>gi|159468217|ref|XP_001692279.1| hypothetical protein CHLREDRAFT_115934 [Chlamydomonas reinhardtii]
 gi|158278465|gb|EDP04229.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 315

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 161/313 (51%), Positives = 211/313 (67%), Gaps = 2/313 (0%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M ++G+   K Y KCAR+ GEV+GK+HPHG+ A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMHELGLVATKPYKKCARVVGEVLGKFHPHGDNAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGKDTVD 152
           YD+L R+AQD+S+R+ L++G GNFGSVD DP AA RYTECRL  AA   LL DLG  TV+
Sbjct: 61  YDSLVRLAQDFSMRVPLVQGHGNFGSVDADPAAAMRYTECRLAPAAEGLLLGDLGAATVE 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +R  +D S QEPVVL A  PN+LVNG  GIAVG+A+ IP HNLGEVV     +I NP++ 
Sbjct: 121 WRDTFDASQQEPVVLPAVVPNLLVNGSQGIAVGLASTIPPHNLGEVVAALRRLIANPEVT 180

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-IVIRGVSHIEKTSGDREQIVVTEI 271
            + LME +RGPD+PTG  ++    +  AY TGRGS    +     E   G  E IV+TE+
Sbjct: 181 TEELMECVRGPDYPTGGQLITGPELLAAYRTGRGSAAAEKLAQAAETADGGPELIVITEL 240

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
           PY V K  +        R      +AD+RDESDR G RVV+E+K G +A+++L QL++ T
Sbjct: 241 PYSVCKVGVKPLTTTCQRTAHCAGVADVRDESDRTGMRVVVEVKMGWNAELLLAQLFKDT 300

Query: 332 SLQSLFSVNMVAL 344
            LQ    V    L
Sbjct: 301 RLQVCADVRWCGL 313


>gi|139438116|ref|ZP_01771669.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
 gi|133776313|gb|EBA40133.1| Hypothetical protein COLAER_00657 [Collinsella aerofaciens ATCC
           25986]
          Length = 706

 Score =  414 bits (1063), Expect = e-113,   Method: Composition-based stats.
 Identities = 209/712 (29%), Positives = 332/712 (46%), Gaps = 53/712 (7%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V + RA P++ DG KP HR++L+ M +MG+   ++  K A I G+ M K +PHG
Sbjct: 1   MPYAMSVNVSRAFPEI-DGFKPSHRKLLYTMYKMGLLKGER-QKSANIVGQTM-KLNPHG 57

Query: 90  NAAIYDALARMAQ-DWSLRLLLIEGQGNFGSV-DGD-PPAAERYTECRLQKAAHFLLDDL 146
           +AAIY+ + R+A  + +L    +E +GNFG    GD   AA RYTE +L   +  +  D+
Sbjct: 58  DAAIYETMVRLATGNEALLAPFVESKGNFGKYYSGDLSYAASRYTEAKLSPISAEIFKDI 117

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KD VDF  +YDG+ +EP +L   +PN+LV+   GI V MA++I   NL EV    +  +
Sbjct: 118 DKDPVDFVDSYDGAMKEPRLLPTTFPNILVSANKGIGVAMASDICGFNLNEVCTATMHYL 177

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
            +PD DL   M     PDF TG  I+  R  ++    TG GS  IR              
Sbjct: 178 QDPDCDLLEYM---PMPDFSTGGEIIYRREEMEKIIETGLGSFQIRSRWRWIPEER---I 231

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I V EIPY      ++E+I +L +E ++ +IAD+RDE+D  G R+ I+LKRG   D ++ 
Sbjct: 232 IEVYEIPYTTKTDVIIERIVKLSKEGKVKEIADIRDETDLSGLRIAIDLKRGVDPDKLMA 291

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +LYR T+LQ  FS N   L    P    +  IL  +V +R E   RR  + L K  +R H
Sbjct: 292 KLYRSTTLQDSFSCNFNVLVDGYPRVMGVRQILHEWVKWRIESTRRRINFDLGKKSERLH 351

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +L GL   + ++D+ + IIR +         LM+                          
Sbjct: 352 LLHGLEAILLDIDKAIAIIRGTKLEAEVVPNLMK-------------------------- 385

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + E Q   + EL+L  +      +   ++  L  EI E  +ILSS   +  +I  EL
Sbjct: 386 GFDIDETQAEFVAELKLRNINEEYILNRTKDIAKLESEIAELEEILSSEENIKKVISDEL 445

Query: 506 LSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
            +V  +   PRRT  +E    +    E  +    + + +S  GY+K       +   R  
Sbjct: 446 AAVNKKYVMPRRTGRIEPHEVIEVSLEPEVEEYPVTIMLSRDGYLK-------KMTDRVL 498

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
           K  + +  +D D     F  S    +L F++   VYK KV           G  L   L 
Sbjct: 499 KKATTLKYKDGDKPFIEFPSSNTHELLVFTNKSQVYKCKVAAFEDTKSAQLGSYLPTDLE 558

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +   E +  ++   +         V+F  ++G V R  LS ++      ++   +    +
Sbjct: 559 MEPDESVIWVIDPEDY-----KADVLFVFENGRVVRVALSGYVTKTNRKRLKNAIYGGSK 613

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +L  +   ++ DI L +   + + F  S ++     N+ GV+  +  KG  V
Sbjct: 614 LLYAQVLKEDRDIALVSSDYRLMNFNTSLLKTKTTTNTQGVQAFTAKKGRSV 665


>gi|294630344|ref|ZP_06708904.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
 gi|292833677|gb|EFF92026.1| LOW QUALITY PROTEIN: DNA gyrase, A subunit [Streptomyces sp. e14]
          Length = 685

 Score =  413 bits (1061), Expect = e-113,   Method: Composition-based stats.
 Identities = 238/727 (32%), Positives = 360/727 (49%), Gaps = 94/727 (12%)

Query: 194 NLGEVVDGCVAVIDNPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           NL EV  G    ++NP+   + L++     I+GPDFPTGA+++GR GI+ AY TGRGSI 
Sbjct: 19  NLREVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGRGSIT 78

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGY 308
           +R V  +E+   +R+ +VVTE+PYQVN   + +KIA+LV++ +I  IAD+RDE S R G 
Sbjct: 79  MRAVVEVEEIQ-NRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQ 137

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VI LKR A A V+LN LY++T LQ+ F  NM+AL    P   +L   ++ +V  + EV
Sbjct: 138 RLVIVLKRDAVAKVVLNNLYKHTDLQTNFGANMLALVDGVPRTLSLDAFIRHWVTHQIEV 197

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           +VRRT++ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM          
Sbjct: 198 IVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVDVARGGLM---------- 247

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                           G + + E+Q  AILE++L RL  L R  I  E + L  +I E  
Sbjct: 248 ----------------GLLEIDEIQANAILEMQLRRLAALERQKIVQEHDELQAKINEYN 291

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL+S  R  GI+  EL ++ ++    R+T+++    DM  ED I  ED+VVTV+  GY+
Sbjct: 292 EILASPVRQRGIVSAELAAIVEKYGDDRKTKLIPYEGDMSIEDLIAEEDIVVTVTRGGYI 351

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     YRAQ+RGGKG  G  ++++D V   F+ +TH  +LFF++ G VY+ K + LP 
Sbjct: 352 KRTKTDDYRAQKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPD 411

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               ARG+ + N+L+    E I  I    + E+     Y+V ATK G V++         
Sbjct: 412 AGRDARGQHVANLLAFQPDESIAQIRAIRDYEAV---PYLVLATKAGLVKKTP------- 461

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                    L   D                                      S GV  I+
Sbjct: 462 ---------LKDYDSPR-----------------------------------SGGVIAIN 477

Query: 729 LAK-----GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           L +      D++I   +V  AD D        + +       +       +         
Sbjct: 478 LREREDGTDDELIGAELVS-ADDDLLLISKKAQSIRFTASDDTLRPMGRATSGVKGMSFR 536

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
              E     +     F+ T ++ G+ KRT   ++R+  R G GI+A  + +  + G LV 
Sbjct: 537 EGDELLSMNVVRPGTFVFTATDGGYAKRTRVDEYRVQGRGGLGIKAAKIVE--DRGELVG 594

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
              V + D+I+ ++  G +IR  VNE+R   R T GV + +  K + VV + R  E+   
Sbjct: 595 ALVVEETDEILAITLSGGVIRTRVNEVRETGRDTMGVQLINLGKRDAVVGIARNAEAGRE 654

Query: 904 DEAESTE 910
            E    +
Sbjct: 655 AEEVDGD 661


>gi|83953741|ref|ZP_00962462.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
 gi|83841686|gb|EAP80855.1| DNA gyrase subunit A [Sulfitobacter sp. NAS-14.1]
          Length = 520

 Score =  411 bits (1056), Expect = e-112,   Method: Composition-based stats.
 Identities = 247/525 (47%), Positives = 332/525 (63%), Gaps = 12/525 (2%)

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
           +AV N+DEVV  IR S +   AR +LM R W A  I   I LIDD ++T   DGT  LSE
Sbjct: 1   MAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALIDDPTHTANDDGTYNLSE 60

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            Q RAILELRL RLT +G  ++ +EL  L  +IKE L+IL SR R++GII  EL  VKD+
Sbjct: 61  AQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSRERIMGIISDELAEVKDQ 120

Query: 512 LDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
              PRRT IV+   DM+DED I REDMVVTV+  GY+KR PL  +R+QRRGGKG SG+  
Sbjct: 121 FAVPRRTEIVDWSGDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFRSQRRGGKGVSGMQT 180

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           ++ED VT LF+ +THT +LFF++ G VYK K WRLP G   ++GKA++NIL +  G  I 
Sbjct: 181 KEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLPQGGRTSKGKAIVNILPIPTGVSIA 240

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD---EILSVE 688
            IMP   DE  W++L VVFAT  G VRRNKLSDF  + R+GKIAMK +       +++  
Sbjct: 241 AIMPVDRDEKEWDDLQVVFATSAGTVRRNKLSDFTNVMRNGKIAMKFEDDHADTTLINAR 300

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             + ++D++L T  G+ +RFP + +RVF  R SVGVRGI L   D+V+SM+I+ H DA  
Sbjct: 301 IASNDDDVMLVTNSGRAIRFPATDVRVFNSRASVGVRGIKLNGDDKVVSMSIIRHFDASS 360

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
           +ER  Y+K     RR ++G  ++    ++++  + N S+ER  E+   E  +LT++EKG 
Sbjct: 361 EERTAYLK----MRRAMAGLADDAEGDEDEAPADPNFSQERYAEMSAAENLLLTITEKGA 416

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GK +SS+D+ +  R G G+ A D  K    G +VA FPV  +DQI+L + KG  IRVPV 
Sbjct: 417 GKLSSSHDYPVRGRGGLGVTAMD--KAMRGGDIVASFPVEMDDQIMLATSKGQSIRVPVE 474

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIR---ESEIVDEAESTE 910
            I   SR+  GV +F T + E VVSV  I    +    DE  + E
Sbjct: 475 GISFRSRSAGGVKVFDTGRGEVVVSVAWIADQGDETGDDEIATPE 519


>gi|4558480|gb|AAD22627.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 211

 Score =  410 bits (1054), Expect = e-112,   Method: Composition-based stats.
 Identities = 126/211 (59%), Positives = 159/211 (75%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           I  + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K A
Sbjct: 1   IELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA RYTE R+
Sbjct: 61  RIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L
Sbjct: 121 TILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSL 180

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
            E+VDG + ++D+ D  L+ LM+ I+GPDFP
Sbjct: 181 NELVDGLLYLLDHKDASLEDLMQFIKGPDFP 211


>gi|254993570|ref|ZP_05275760.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 281

 Score =  409 bits (1052), Expect = e-112,   Method: Composition-based stats.
 Identities = 137/278 (49%), Positives = 192/278 (69%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P HNL E+++  +  +DNP    D +M+I++GPDFPTG +I G  GI+ AY TG+G +V+
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFPTGGIIQGIDGIRKAYQTGKGRVVV 242

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           R  + IE   G R+QI + EIPY+VNKA +++++ EL 
Sbjct: 243 RSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRMDELR 280


>gi|317133928|ref|YP_004089839.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
 gi|315450390|gb|ADU23953.1| DNA topoisomerase (ATP-hydrolyzing) [Ruminococcus albus 7]
          Length = 729

 Score =  409 bits (1050), Expect = e-111,   Method: Composition-based stats.
 Identities = 213/771 (27%), Positives = 364/771 (47%), Gaps = 58/771 (7%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E  +      ++ +  + +++ +  +Y+ YA++VI  RA+P++ DG KP HR++L+ M 
Sbjct: 6   AETAVIDRTGYDEHMRDIVVSEVLTENYMPYAMSVIKSRALPEI-DGFKPAHRKLLYTMY 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW-SLRLLLIEGQGNFG-- 118
           QM +   K   KCA I G+ M +Y+PHG+++IY+ L R+ +D  SL   LI  +GNFG  
Sbjct: 65  QMKLFDKK--TKCANIVGQTM-QYNPHGDSSIYETLVRLTEDNESLLTPLISSKGNFGKH 121

Query: 119 -SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            S D    AA RYTE    K A  L + + K+ VD   N+D + +EPV+L   +PN+L  
Sbjct: 122 YSRDM-AYAAYRYTEAGFTKIAAELFEGINKNAVDMADNFDATKKEPVLLPTSFPNILAM 180

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTG 236
              GIAVGMA+NI + NL E+ +  +  I +P  D+  +M    GPDF TG  I   R  
Sbjct: 181 PTLGIAVGMASNIASFNLKELCEATIEYIKDPKTDILDIM---PGPDFSTGGDILFDRDE 237

Query: 237 IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
           +   Y TG+GSIV+R    ++K +    +I + EIPY     A++E +  L + KRI+DI
Sbjct: 238 MDKIYRTGKGSIVVRSKYTVDKKNR---RIEIREIPYSTTTEAIIENVISLCKSKRIMDI 294

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
            D+RD++D+ G  + IE KR A  D I+N+LY  T LQ  FS N   L    P    + G
Sbjct: 295 DDIRDDTDKNGLLITIEYKRSADPDEIMNKLYSLTPLQDTFSCNFTMLINNNPVVLGVYG 354

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL  ++ FR E + R   Y L   R + H++ GL   + N+D+ ++IIR +   +     
Sbjct: 355 ILDEWIKFRTECIKRELTYDLEIFRKKLHLMEGLQKILLNIDKAIKIIRGTKLDKDVIPN 414

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM+                             + + Q   I E+RL  +      D   E
Sbjct: 415 LMK--------------------------GFDIDKTQAEYITEIRLRNINEEWILDRTKE 448

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLS--VKDELDTPRRTRIVE--GLLDMEDEDC 532
           +  +  +IK+   I+SS   L   I ++L     K++   PR+T I     +  +   + 
Sbjct: 449 IEKIKEDIKKNETIISSDKALKKQIIKKLKEIANKEDYIKPRKTTINTEVKVEKVTVIEE 508

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +   D+ + +S  GYVK+VP S Y+         +   ++D+D +  +        VL F
Sbjct: 509 VKNYDVKIIISEHGYVKKVPTSTYKED-------TEYKLKDDDRILKIIDAQNIGEVLTF 561

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G VYK K+  + +      G  + +   +   E+   I    +   +     ++   
Sbjct: 562 TDKGVVYKTKISDIEVCKAGEFGTFIRSAAEIPDDEKTVFITATGDFSGN-----MIVVF 616

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           ++G V +  L+ +       K+     +  + ++     ++ +I + +  G+ + F    
Sbjct: 617 ENGKVAKFPLNVYETKQNRKKLINAFYTNVKPVAFYHVLEDVNIKMKSDGGKLLIFNSEM 676

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           I +   + + G + + L K  +++   I+   D    + +      S   R
Sbjct: 677 INLKNSKTTQGTQVMKLPKETKILKSRIIEELDKKSSKIVVKSIPASGFSR 727



 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 59/179 (32%), Gaps = 13/179 (7%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D++  + I+   +            +   +       +         S      +
Sbjct: 539 KLKDDDRI--LKIIDAQNIGEVLTFTDKGVVYKTKISDIEVCKAGEFGTFIRSAAEIPDD 596

Query: 788 ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVA 843
           E+   +     F   ++ V E G   +     +    NR  K +     + +      VA
Sbjct: 597 EKTVFITATGDFSGNMIVVFENGKVAKFPLNVYETKQNR--KKLINAFYTNVKP----VA 650

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTAKDERVVSVERIRESE 901
            + V ++  I + SD G L+      I +  S+ T+G  +    K+ +++    I E +
Sbjct: 651 FYHVLEDVNIKMKSDGGKLLIFNSEMINLKNSKTTQGTQVMKLPKETKILKSRIIEELD 709



 Score = 37.8 bits (86), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/130 (11%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +   +          K +  + + I+   + I   K   + E  + +    E        
Sbjct: 456 IKKNETIISSDKALKKQIIKKLKEIANKEDYIKPRKTTINTEVKVEKVTVIEEVKNYDVK 515

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           + +SE G+ K+  +  ++             +   + I  ++    +    +++  +DKG
Sbjct: 516 IIISEHGYVKKVPTSTYKED-------TEYKLKDDDRILKIIDAQNIG---EVLTFTDKG 565

Query: 861 TLIRVPVNEI 870
            + +  +++I
Sbjct: 566 VVYKTKISDI 575


>gi|3548920|gb|AAC68576.1| DNA gyrase A [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 196

 Score =  408 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 125/196 (63%), Positives = 158/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH LL DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLA 180

Query: 197 EVVDGCVAVIDNPDID 212
           EVV+GC+A ID+ +I 
Sbjct: 181 EVVNGCLAYIDDENIS 196


>gi|330939645|gb|EGH42950.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 194

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 124/192 (64%), Positives = 151/192 (78%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+ K AH LL DL K+TVD+ PNYDG+   P V+  R PN+LVNG  GIAVGMATNI
Sbjct: 123 TEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNLGEV+DGC
Sbjct: 183 PPHNLGEVIDGC 194


>gi|462225|sp|P34030|GYRA_SPICI RecName: Full=DNA gyrase subunit A
 gi|49349|emb|CAA79524.1| DNA gyrase subunit A [Spiroplasma citri]
 gi|745459|prf||2016285D DNA gyrase:SUBUNIT=A
          Length = 227

 Score =  405 bits (1041), Expect = e-110,   Method: Composition-based stats.
 Identities = 126/216 (58%), Positives = 163/216 (75%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  + I DEM+N +L YA++VI+ RAIPD+RDGLKPVHRRI++ M  + + + K++ 
Sbjct: 12  DGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHK 71

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI GEV+GKYHPHG+ A+Y+A+ RMAQD+S R  LI+G GNFGS+DGDPPAA RYTE
Sbjct: 72  KSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTE 131

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            ++ K A  ++ D+ K+T  F  NYDGS +EP  L   +PN+LVNG  GIAVGMATNIP 
Sbjct: 132 AKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPP 191

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
           HNL EV+DG +AV  NP+I    LM+II+GPDFPTG
Sbjct: 192 HNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227


>gi|157644498|gb|ABV58972.1| GyrA [Bacillus subtilis subsp. subtilis]
          Length = 300

 Score =  404 bits (1038), Expect = e-110,   Method: Composition-based stats.
 Identities = 163/278 (58%), Positives = 217/278 (78%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M  +G+  +K Y K ARI GEV+GK HP G++A+Y++  RMAQD++   +L++G
Sbjct: 1   RRILYAMNDLGMTSDKPYKKSARIVGEVIGKSHPRGDSAVYESRVRMAQDFNYLYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            GNFG VDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN
Sbjct: 61  HGNFGFVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPN 120

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +LVNG  GIAVGMATNIP H LGE++DG +AV +NPD+ +  LME+I GPDFPT   ILG
Sbjct: 121 LLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENPDVTIPELMEVIPGPDFPTAGQILG 180

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
           R+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I
Sbjct: 181 RSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKI 240

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             I DLRDESDR G R+VIE++R A+A+VILN LY+ T
Sbjct: 241 EGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQT 278


>gi|144954320|gb|ABP04236.1| gyrase alpha subunit [Yersinia pseudotuberculosis]
          Length = 188

 Score =  404 bits (1037), Expect = e-110,   Method: Composition-based stats.
 Identities = 123/188 (65%), Positives = 152/188 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLS 180

Query: 197 EVVDGCVA 204
           EV+DGC+A
Sbjct: 181 EVIDGCLA 188


>gi|3548918|gb|AAC68575.1| DNA gyrase A [Providencia stuartii]
          Length = 196

 Score =  403 bits (1035), Expect = e-110,   Method: Composition-based stats.
 Identities = 122/196 (62%), Positives = 158/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  IVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRMA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH +L DL K+TVDF PNYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNLG
Sbjct: 121 KIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNLG 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV+ GC+A ID+ DI 
Sbjct: 181 EVISGCLAYIDDEDIS 196


>gi|225851095|ref|YP_002731329.1| DNA gyrase subunit A [Persephonella marina EX-H1]
 gi|225644811|gb|ACO02997.1| DNA gyrase subunit A [Persephonella marina EX-H1]
          Length = 1217

 Score =  403 bits (1034), Expect = e-109,   Method: Composition-based stats.
 Identities = 214/786 (27%), Positives = 366/786 (46%), Gaps = 116/786 (14%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE RL K A  +L D+ K+TVD + N+D S  EP VL A++PN++ NG  GIAVG++TNI
Sbjct: 534  TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIV 249
            P HN  EV +    + + P+  ++ L + I+GPDFPTG + I     I   Y  GRGS+ 
Sbjct: 594  PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
            ++G + IE+  G+R +I++ EIPYQVNK  ++++IAELVR+ +   I+DLRDESDR G R
Sbjct: 654  VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            +V+ELKR A  + +L +LYR T LQ    +N+  L G +P+   L G+L+ F+  R +V+
Sbjct: 714  IVVELKREADPEKVLKKLYRRTQLQKSIPINLTVLVGKQPKTVDLKGLLQEFIKHRVDVI 773

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             RRT + L KA +R H++ GL  A+ N D V+ I+R S +  +AR +L++          
Sbjct: 774  TRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEE--------- 824

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                               LS+ Q +AIL++RL+R T L  D +  E + L ++I+E   
Sbjct: 825  -----------------FELSDTQAQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQR 867

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
            ILSS    + +  +E+  + ++    R+T IVE             E  ++ V   G + 
Sbjct: 868  ILSSEEEKIRVFIEEIDELLEKFGDERKTVIVEEKEAG----LTFEEHYILAVLSSGRIL 923

Query: 550  RVPLSVYRAQRRGGKGRSG---VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
               +     ++   +         ++  + +  +  V +   + F +  G  Y   V  L
Sbjct: 924  NRRIDDDADKKDIFQKVMNEVVSSVKPGEKLISVQEVESSIPIAFITDKGKAYWSLVADL 983

Query: 607  PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
            P G  +         +++++GE     +     +       +   TK+G ++R    D  
Sbjct: 984  PKGEGR---------INIDEGE-----IVGTAFKGEGEEDRLFILTKNGIIKRMSYEDIF 1029

Query: 667  QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
              +++  I + L   D +++       + I + T+ G  + F  + +RV  G  + GV  
Sbjct: 1030 YKSQNHSI-IPLAEDDCVVTAFADDHPSLIGVYTRKGDLLLFERNQVRV-TGDKAKGVEA 1087

Query: 727  ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            I L +GD V    ++   D                                         
Sbjct: 1088 IDLDEGDTVAGGFLINSED----------------------------------------- 1106

Query: 787  EERCQELKLKEQFILTVSEKGFGKRTSSYDF-----RISNRSGKGIRATDVSKINEIGAL 841
                         I+TV++ G+ K     +F     ++  R+ KG+ A  +    +   L
Sbjct: 1107 ------------LIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVKLG---KDDFL 1151

Query: 842  VAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTAKDERVVSVE--RI 897
                PV  ++ +   ++KG ++++ V++  I +A R   G  +    + + VV     +I
Sbjct: 1152 SVAVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTAMGDPVLKI-EGDYVVRAVKPKI 1210

Query: 898  RESEIV 903
            +  E  
Sbjct: 1211 KSEEND 1216



 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/117 (62%), Positives = 95/117 (81%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I +E++++YL YA++VI+GRAIPD+RDGLKPV RRIL+ M ++G+  NK Y K
Sbjct: 2   SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            AR+ GEV+GKYHPHG+ ++YDAL RMAQD++LR  LI+GQGNFGS+DGDPPAA RY
Sbjct: 62  SARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPPAAMRY 118


>gi|91093495|gb|ABE11578.1| GyrA [Escherichia coli]
          Length = 211

 Score =  402 bits (1033), Expect = e-109,   Method: Composition-based stats.
 Identities = 124/205 (60%), Positives = 162/205 (79%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEI 219
           L EV++GC+A ID+ DI ++ LME 
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEH 211


>gi|46204725|ref|ZP_00049578.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 260

 Score =  402 bits (1032), Expect = e-109,   Method: Composition-based stats.
 Identities = 131/246 (53%), Positives = 167/246 (67%), Gaps = 1/246 (0%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +        E  + I  V +  EM+ S+L YA +VI  RA+PD RDGLKPV RRIL+ M 
Sbjct: 5   SSTPSIDPAEVNEKIVDVDVQAEMETSFLEYAYSVIYSRALPDARDGLKPVQRRILYMMA 64

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
            MG+  ++ +VK AR+ GEVMGK HPHG+AAIYDAL R++QD+SLRL L++G GNFG++D
Sbjct: 65  DMGLRPDRAHVKSARVVGEVMGKLHPHGDAAIYDALVRLSQDFSLRLPLVDGHGNFGTLD 124

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            D PAA RYTE RL   +  +   L +D VDF PNYD   Q+P VL A  PN+LVNG  G
Sbjct: 125 -DGPAASRYTEARLAPPSLAMTAGLDEDVVDFVPNYDNKLQQPEVLPAAIPNLLVNGASG 183

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVGMATN+  HNL EVV     ++ +PD DL+ALM  + GPD PTG  I+G  G+++AY
Sbjct: 184 IAVGMATNMAPHNLVEVVAAARHLVAHPDADLEALMRFVPGPDLPTGGKIVGLDGVRDAY 243

Query: 242 ATGRGS 247
            TGRG 
Sbjct: 244 RTGRGR 249


>gi|3548914|gb|AAC68573.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 196

 Score =  401 bits (1030), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/196 (60%), Positives = 156/196 (79%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ++N DI 
Sbjct: 181 EVINGCLAYVENEDIS 196


>gi|3548908|gb|AAC68570.1| DNA gyrase A [Escherichia coli DSM 30083]
          Length = 196

 Score =  400 bits (1028), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 157/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ID+ DI 
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|91093371|gb|ABE11566.1| GyrA [Escherichia coli]
 gi|91093393|gb|ABE11567.1| GyrA [Escherichia coli]
 gi|91093397|gb|ABE11568.1| GyrA [Escherichia coli]
 gi|91093415|gb|ABE11569.1| GyrA [Escherichia coli]
 gi|91093421|gb|ABE11570.1| GyrA [Escherichia coli]
 gi|91093439|gb|ABE11571.1| GyrA [Escherichia coli]
 gi|91093441|gb|ABE11572.1| GyrA [Escherichia coli]
 gi|91093447|gb|ABE11573.1| GyrA [Escherichia coli]
 gi|91093455|gb|ABE11574.1| GyrA [Escherichia coli]
 gi|91093483|gb|ABE11575.1| GyrA [Escherichia coli]
 gi|91093491|gb|ABE11576.1| GyrA [Escherichia coli]
 gi|91093493|gb|ABE11577.1| GyrA [Escherichia coli]
 gi|91093497|gb|ABE11579.1| GyrA [Escherichia coli]
          Length = 211

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 123/205 (60%), Positives = 162/205 (79%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEI 219
           L EV++GC+A ID+ DI ++ LME 
Sbjct: 187 LTEVINGCLAYIDDEDISIEGLMEH 211


>gi|310816011|ref|YP_003963975.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
 gi|308754746|gb|ADO42675.1| DNA gyrase subunit A [Ketogulonicigenium vulgare Y25]
          Length = 487

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 232/493 (47%), Positives = 313/493 (63%), Gaps = 7/493 (1%)

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R W A DI + I LIDD S+T+  DGT  LS++Q RAILELRL RLT +G  ++ +EL
Sbjct: 1   MTRRWPAMDIAEYIKLIDDPSHTMNDDGTYNLSDLQARAILELRLQRLTQIGVKEVTDEL 60

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
             L  +I++ LDILSSR R+L II+ EL  V+D+   PRRT I +   D++DED I RED
Sbjct: 61  QELAAKIRDYLDILSSRERILAIIEGELTEVRDQFAVPRRTEIADWAGDLDDEDLIERED 120

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVTV+  GY+KR  L+ +R+Q+RGGKG S +  +DED VT LF+ +THT +LFF++ G 
Sbjct: 121 MVVTVTSGGYIKRTALAEFRSQKRGGKGLSSMQTKDEDVVTALFVANTHTQLLFFTTDGM 180

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VYK K WRLP+ +  ARGKA++NIL + QG  I  IMP    +S W+ L  VFAT  G+V
Sbjct: 181 VYKLKCWRLPLAARTARGKAIVNILPIPQGVTIAAIMPVDRPDSEWDELQAVFATSDGDV 240

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           RRN LSDF  + R+GKIAMKL     ++ V+  ++++D+LL T  G+ +RF  + +RVF 
Sbjct: 241 RRNALSDFTNVMRNGKIAMKLPEGVSLVDVKIASEDDDVLLVTNSGRAIRFQTTDVRVFK 300

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR+S GVRGI L   D+V+SM I+ H +AD  ER  Y+K   A   ++     E      
Sbjct: 301 GRDSTGVRGIRLQGDDRVVSMDIIKHFEADPAERAAYLKMRRAIEGVL-----EEAETDE 355

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D    G I++ER  E+   E  ILT++  G GK +SS+D+ +  R G G+RA D      
Sbjct: 356 DEVEAGAITQERYAEMSAFENLILTITRSGAGKLSSSHDYPVRGRGGMGVRAMD--AAMR 413

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G LVA FPV  +DQ++LV+  G  IRVPV  I   SR   GV +F+T  DE VVSV RI
Sbjct: 414 GGDLVAAFPVEMDDQVMLVTSTGQSIRVPVKGISFRSRGAGGVRVFNTGTDEHVVSVARI 473

Query: 898 RESEIVDEAESTE 910
            E+   ++   TE
Sbjct: 474 AEAGGDEDDAITE 486


>gi|330939644|gb|EGH42949.1| DNA gyrase subunit A [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 703

 Score =  400 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 253/692 (36%), Positives = 379/692 (54%), Gaps = 52/692 (7%)

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG-- 261
           A+IDNP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  S +E      
Sbjct: 1   ALIDNPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVG 60

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            R+QIV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVVIEL+RG   +
Sbjct: 61  GRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPE 120

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           VILN LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV RRT + L KAR
Sbjct: 121 VILNNLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKAR 180

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
           +R H+L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + ++++     S   
Sbjct: 181 ERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRP 240

Query: 442 G--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                     +G  +LS  Q +AILELRL RLTGL  + +  E   +  +I E + IL+S
Sbjct: 241 ENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNS 300

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            +RL+ +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+SH GY K  PL
Sbjct: 301 ATRLMEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQPL 360

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
           +VY+AQRRGGKG+S   ++DED++  L + ++HT++L FSS G VY  K + +P  S  A
Sbjct: 361 AVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAA 420

Query: 614 RGKALINILSLNQGERITTIMPFPEDESS------------------------------- 642
           RG+ L+N+L L+ GE ITT++P   +                                  
Sbjct: 421 RGRPLVNLLPLSDGEYITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARI 480

Query: 643 -----WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
                    ++  +T +G V++  L  F +   SG IA++LD  D ++S      E +I+
Sbjct: 481 KAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIM 540

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L +  G+  RF  S +R   GR + GVRG+ L +G ++ISM I                 
Sbjct: 541 LFSDGGKVTRFKESDVRAM-GRTARGVRGMRLPEGQKLISMLIPEEGSQILTASERGYGK 599

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
            +A              +   S+          Q L  +E  I+ +S++G   RT   + 
Sbjct: 600 RTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGEE--IMLISDQGTLVRTRVGEV 657

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVND 849
               R+ +G+    ++   +   LV +  V +
Sbjct: 658 SSLGRNTQGVTLIKLASDEK---LVGLERVQE 686


>gi|3548916|gb|AAC68574.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 196

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 157/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A +D+ DI 
Sbjct: 181 EVINGCLAYVDDEDIS 196


>gi|213618739|ref|ZP_03372565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 199

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 119/193 (61%), Positives = 155/193 (80%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 186

Query: 195 LGEVVDGCVAVID 207
           L EV++GC+A ID
Sbjct: 187 LTEVINGCLAYID 199


>gi|71031392|ref|XP_765338.1| DNA gyrase subunit A [Theileria parva strain Muguga]
 gi|68352294|gb|EAN33055.1| DNA gyrase subunit A, putative [Theileria parva]
          Length = 1014

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 212/923 (22%), Positives = 382/923 (41%), Gaps = 102/923 (11%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             + E++ +  + + D M +S+L YA+++ILGRA+PD RDGLK VHRRI++ M  + ++ 
Sbjct: 91  DGDSEKESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDP 150

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           N +Y KCA++ G+V+G YHPH + ++YDAL R++QD+ +++ LI+G GNFGS + DPPAA
Sbjct: 151 NGQYRKCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS-NNDPPAA 209

Query: 128 ERYTECRLQKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL   +   +L+D+  +T+D+ PN+D +  EP+VL  R PN+L+NG  GIAVG+
Sbjct: 210 MRYTECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGL 269

Query: 187 ATNIPTHNLGEVVDGCVAVIDN---------------------PDIDLDALMEIIRGPDF 225
           ATNIP HN  EV++  +  I +                      D     ++  + GPDF
Sbjct: 270 ATNIPPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDF 329

Query: 226 PTGAVIL-GRTGIKNAYATGRGSIVIRGVSHIEK-----------------TSGDREQIV 267
           PTG VI   R  ++  Y +G+G+++I+     E+                     R  IV
Sbjct: 330 PTGGVIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIV 389

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA----DVI 323
           + +IPY      ++E I   ++   I+ + D++DESDR G R+V+ELKR  S+      I
Sbjct: 390 INQIPYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEI 449

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           + +L R T     +  N + L+  KP RF L  ILK ++ FR +V+ R+ K+LL K +  
Sbjct: 450 MAKLQRLTEY--NYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKN 507

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             ++    I   N++ ++   +                                      
Sbjct: 508 LDIINAYIIIYLNINTIINSFQNHQ----------------------------KGVYKVL 539

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L++ Q ++++ L L +L  L  D+++ +      +I+   ++L++ + L   I  
Sbjct: 540 KEEFKLNDDQMKSVMRLTLRQLNQLNIDNLKEKSGEYTKQIEFYENVLNNDTNLYNEIIS 599

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           +L  +KD     +R  ++    +  + +  V        +    V    +          
Sbjct: 600 DLTELKDHFKNIKRNTLIIYTDEGSNFETTVEGVEGPEGTSEDKVDPSVVESDDNIIIYN 659

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV-YKEKVWRLPIGSPQARGKALINIL 622
                  ++ +          +        S             P  +   R K     +
Sbjct: 660 SLGRISKIKLDQKFYKSNKNKSIRISNPIHSHSTTPDTSIESSTPDSNKNNRAKKGETKI 719

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
                  +        ++             + +  +     +        + +K D   
Sbjct: 720 DEAAALEVGYCSNNNSNKIIIILKNGRIMHVNSSKLKLCKKGYDMFKY---LGIKNDEMI 776

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E ++       + I++    G       + + +   +  + ++     K  +      + 
Sbjct: 777 EYITSIGKHLGDIIMVGYGNGIMTICNTNRLNLKLSKTKLNLKLNLKNKEIKFFFNYNLN 836

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT 802
           H   +    IC  +    +  L S   +                E     L   +Q IL 
Sbjct: 837 HISQNPFLFICTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDEVVSSCLANDQQHILI 896

Query: 803 VSEKG-------FG---KRTSSYDFRISNRSGKGI-------RATDVSKINEIGAL---V 842
           ++ KG       +    K  +  D ++    GKG        ++   S  +    L   V
Sbjct: 897 LTSKGKHQRHNLYVGKYKLININDIKLQKIKGKGYNILRNSQKSIKKSGGDNSSNLDEAV 956

Query: 843 AVFPVN---DNDQIILVSDKGTL 862
           +   V+   +   I+L+S  G L
Sbjct: 957 SCTNVDKIKEKKNILLISKGGIL 979


>gi|260748873|gb|ACX48753.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/198 (62%), Positives = 158/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|3548906|gb|AAC68569.1| DNA gyrase A [Citrobacter freundii]
          Length = 196

 Score =  399 bits (1025), Expect = e-108,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 156/196 (79%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ Q P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ID+ DI 
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|3548912|gb|AAC68572.1| DNA gyrase A [Enterobacter cloacae]
          Length = 196

 Score =  399 bits (1024), Expect = e-108,   Method: Composition-based stats.
 Identities = 119/196 (60%), Positives = 157/196 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNIT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A ID+ DI 
Sbjct: 181 EVINGCLAYIDDEDIS 196


>gi|32261029|emb|CAD99012.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  398 bits (1023), Expect = e-108,   Method: Composition-based stats.
 Identities = 126/213 (59%), Positives = 163/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+AA+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|32261026|emb|CAD99009.2| DNA gyrase subunit A [Campylobacter jejuni]
 gi|32261027|emb|CAD99010.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 125/213 (58%), Positives = 162/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|332141548|ref|YP_004427286.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551570|gb|AEA98288.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 545

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 198/563 (35%), Positives = 299/563 (53%), Gaps = 87/563 (15%)

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +V RRT + L KARDRAH+L GLAIA+AN+D ++ +I+ S +P  A++ L+ + W+  D+
Sbjct: 1   MVTRRTVFELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDV 60

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + I  E   
Sbjct: 61  AQMLERAGDDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQ 120

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L   I E L IL+S  RL+ +I++EL  ++DE    RRT I     D++ ED I +ED+V
Sbjct: 121 LLELIAELLHILNSPERLMEVIQEELEKIRDEFGDERRTEITAASHDIDIEDLIEQEDVV 180

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+S  GYVK   L+ Y AQRRGG+G+S   M+DED +  L + +TH  +L FS+ G +Y
Sbjct: 181 VTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILCFSTRGRLY 240

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV++LP  S  ARG+ ++NIL L   ERIT I+P  E E      YV+ AT +G V++
Sbjct: 241 WLKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFE---EGKYVLMATANGTVKK 297

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPIS-------- 711
             LS + +   SG IA+ L+  DE++ V+    ++DI+L +  G+ VRF           
Sbjct: 298 TDLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDIMLFSDAGKVVRFNEKLRDSETGE 357

Query: 712 ------------AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                       A+R   GR + GVRGI L  G +V+S+ +                   
Sbjct: 358 VKRDPETGEELLALRPM-GRTATGVRGIRLQDGQKVVSLIV------------------- 397

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                                                +  +LT +E GFGKRT   D+  
Sbjct: 398 ----------------------------------PKGDGPVLTATENGFGKRTPLEDYPA 423

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            +R+ +G+ +  VS+ N  G +V    V+D ++I+L+SD+GTL+R  V+E+ +  R T+G
Sbjct: 424 KSRATQGVVSIKVSERN--GKVVGAVQVDDTNEIMLISDQGTLVRTRVSEVSVVGRNTQG 481

Query: 880 VVIFSTAKDERVVSVERIRESEI 902
           V +  T + E VV ++RI E E 
Sbjct: 482 VRLIRTVEGEHVVGLQRIEEVEE 504



 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 72/445 (16%), Positives = 139/445 (31%), Gaps = 31/445 (6%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL    +  H+L      +  + E +  IR     E       + +  +
Sbjct: 110 EHEKILEEYKQLLELIAELLHILNSPERLMEVIQEELEKIRD----EFGDERRTEITAAS 165

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            DI     +  +      S       +  T    + R  R     +    + +  L +  
Sbjct: 166 HDIDIEDLIEQEDVVVTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVAN 225

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--------DCIVRE 536
                +  S    L  +K   L         R   IV  L   ++E              
Sbjct: 226 THDHILCFSTRGRLYWLKVYQLPFASRNARGR--PIVNILPLEDNERITAILPIKEFEEG 283

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
             V+  +  G VK+  LS+Y   R  G     +   DE    D+        ++ FS  G
Sbjct: 284 KYVLMATANGTVKKTDLSLYSRPRSSGIIAVNLNEGDELIGVDI--THGDDDIMLFSDAG 341

Query: 597 FVYKEK--VWRLPIGSPQARGKALINILSLNQGERITTIMP---------FPEDESSWNN 645
            V +    +     G  +   +    +L+L    R  T +                   +
Sbjct: 342 KVVRFNEKLRDSETGEVKRDPETGEELLALRPMGRTATGVRGIRLQDGQKVVSLIVPKGD 401

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKL 702
             V+ AT++G  +R  L D+   +R+ +  + +       +++        N+I+L +  
Sbjct: 402 GPVLTATENGFGKRTPLEDYPAKSRATQGVVSIKVSERNGKVVGAVQVDDTNEIMLISDQ 461

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G  VR  +S +    GRN+ GVR I   +G+ V+ +  +   +            +    
Sbjct: 462 GTLVRTRVSEV-SVVGRNTQGVRLIRTVEGEHVVGLQRIEEVEELQAFDEDGNLIIPEDA 520

Query: 763 RLISGDTEEITSLKNDSSVEGNISE 787
              +    +      +        E
Sbjct: 521 SEQAETAVQEQDNAAEDGEGSTTEE 545



 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 73/217 (33%), Gaps = 57/217 (26%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    +       +    +  + +     +   ++L  +E  +
Sbjct: 121 LLELIAELLHILNSPERLMEVIQEELEKIRDEFGDERRTEITAASHDIDIEDLIEQEDVV 180

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK-------------------------- 834
           +T+S +G+ K     D+    R G+G  AT +                            
Sbjct: 181 VTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDIIERLLVANTHDHILCFSTRGRLY 240

Query: 835 -----------INEIGA-LVAVFPVNDNDQI---------------ILVSDKGTLIRVPV 867
                       N  G  +V + P+ DN++I               ++ +  GT+ +   
Sbjct: 241 WLKVYQLPFASRNARGRPIVNILPLEDNERITAILPIKEFEEGKYVLMATANGTVKKT-- 298

Query: 868 NEIRIASR-ATKGVVIFSTAKDERVVSVERIRESEIV 903
            ++ + SR  + G++  +  + + ++ V+     + +
Sbjct: 299 -DLSLYSRPRSSGIIAVNLNEGDELIGVDITHGDDDI 334


>gi|68248472|gb|AAY88730.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 228

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 126/228 (55%), Positives = 168/228 (73%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           + +   ++  I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     
Sbjct: 1   MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEA 60

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  
Sbjct: 61  KSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSA 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 121 AAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           MATNIP H+L E++DG + ++D+ D  L+ +M+ I+GPDFPTG +I G
Sbjct: 181 MATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIYG 228


>gi|3548910|gb|AAC68571.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 196

 Score =  398 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 120/196 (61%), Positives = 156/196 (79%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR
Sbjct: 1   TRVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 180

Query: 197 EVVDGCVAVIDNPDID 212
           EV++GC+A +DN DI 
Sbjct: 181 EVINGCLAYVDNEDIS 196


>gi|112806708|emb|CAJ28004.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 218

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 152/218 (69%), Positives = 182/218 (83%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+ M + G  WN+K+VK +RI G+VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAMQEGGYHWNRKHVKSSRIVGDVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+D DPPAA RYTE RL K AH LL+D+ K+TVDF+ NYDG+ QEP
Sbjct: 61  SLRVPLIDGQGNFGSIDADPPAAMRYTESRLTKVAHELLEDIDKETVDFQDNYDGAEQEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNL EV +G +A+IDNP IDL ALMEI+ GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLAEVCNGAMAIIDNPAIDLPALMEIVPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG   IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVEIERRGND 218


>gi|52843256|gb|AAU88057.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843258|gb|AAU88058.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843260|gb|AAU88059.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 157/198 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|260748871|gb|ACX48752.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  397 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 124/198 (62%), Positives = 157/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|112806706|emb|CAJ28003.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 218

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 153/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|32261030|emb|CAD99013.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 125/213 (58%), Positives = 162/213 (76%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++DN D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDNKDASLEEIMQFIKGPDFPTGGII 215


>gi|112806704|emb|CAJ28002.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 218

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +AVIDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAVIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|112806700|emb|CAJ28000.1| DNA gyrase subunit A [Mesorhizobium ciceri]
          Length = 218

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 154/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRILF   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILFAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTEARLTKVAHELLEDIDKDTVDFQDTYDASGSEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGRVNIEQRGND 218


>gi|23429763|gb|AAN23863.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + R+ QD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDSAVYDTIVRLVQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N ++ +D LM  I
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|14994223|gb|AAK73347.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  396 bits (1016), Expect = e-107,   Method: Composition-based stats.
 Identities = 119/194 (61%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D+ +D LM  I
Sbjct: 181 ENGDLTIDELMTYI 194


>gi|112806702|emb|CAJ28001.1| DNA gyrase subunit A [Mesorhizobium huakuii]
          Length = 218

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 153/218 (70%), Positives = 179/218 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDW
Sbjct: 1   VRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR+ LI+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP
Sbjct: 61  SLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
            VL AR+PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPD
Sbjct: 121 KVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPD 180

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           FPTG ++LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 FPTGGIVLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 218


>gi|114224641|gb|ABI55205.1| DNA gyrase A [Shigella sonnei]
          Length = 200

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/200 (61%), Positives = 157/200 (78%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN+ EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNITEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPTGA 229
           DI ++ LME I GPDFPT  
Sbjct: 181 DISIEGLMEHIPGPDFPTAE 200


>gi|32261028|emb|CAD99011.2| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/213 (58%), Positives = 161/213 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++D+ D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|321116498|dbj|BAJ72201.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 194

 Score =  395 bits (1015), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/194 (59%), Positives = 154/194 (79%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           ++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G
Sbjct: 1   NLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A
Sbjct: 61  DVMGKYHPHGDSSIYAAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL D+ K+TV+F+ NYDGS +EPVVL AR+PN+LVNG  GIAVGMATNIP HNL E +
Sbjct: 121 LELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESI 180

Query: 200 DGCVAVIDNPDIDL 213
           D    V+++PD   
Sbjct: 181 DAVKMVMEHPDCTT 194


>gi|23429751|gb|AAN23862.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 156/194 (80%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVGMATNIP HNL E+V+GC A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSPGIAVGMATNIPPHNLTEIVNGCRALI 180

Query: 207 DNPDIDLDALMEII 220
           +N ++ +D LM  I
Sbjct: 181 ENGNLTIDELMTYI 194


>gi|52843262|gb|AAU88060.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843264|gb|AAU88061.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 156/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|260748875|gb|ACX48754.1| DNA gyrase subunit A [Escherichia coli]
          Length = 198

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 123/198 (62%), Positives = 157/198 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDFPT 227
           DI ++ LME I GPDFPT
Sbjct: 181 DISIEGLMEHIPGPDFPT 198


>gi|10717007|gb|AAG22004.1|AF282315_1 gyrase subunit A [Yersinia pseudotuberculosis]
          Length = 178

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 116/178 (65%), Positives = 144/178 (80%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K A
Sbjct: 1   ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 60

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+
Sbjct: 61  RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 120

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
            K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 121 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 178


>gi|257472216|gb|ACV53949.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472218|gb|ACV53950.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 160/259 (61%), Positives = 206/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+R A+A+V+
Sbjct: 241 RNGMRIVIELRRDANANVL 259


>gi|257472186|gb|ACV53934.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472188|gb|ACV53935.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472190|gb|ACV53936.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472192|gb|ACV53937.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472196|gb|ACV53939.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472198|gb|ACV53940.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472210|gb|ACV53946.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472212|gb|ACV53947.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472214|gb|ACV53948.1| gyrase subunit A [Bacillus licheniformis]
 gi|257472220|gb|ACV53951.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/259 (62%), Positives = 206/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+R A+A+V+
Sbjct: 241 RNGMRIVIELRRDANANVL 259


>gi|13810773|gb|AAK40031.1|AF272021_1 DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 253

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 151/252 (59%), Positives = 199/252 (78%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD  AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG
Sbjct: 61  SVDGDSAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+
Sbjct: 121 AAGIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIR 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I D
Sbjct: 181 KAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITD 240

Query: 299 LRDESDRQGYRV 310
           LRDESDR G R+
Sbjct: 241 LRDESDRTGMRI 252


>gi|168187078|ref|ZP_02621713.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
 gi|169295011|gb|EDS77144.1| DNA topoisomerase [Clostridium botulinum C str. Eklund]
          Length = 1417

 Score =  394 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 204/784 (26%), Positives = 357/784 (45%), Gaps = 79/784 (10%)

Query: 9    DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            D E+EK I  V     +  +YL YAI VI  RAI  + DG KP HR++L+ + +  + +N
Sbjct: 665  DNEQEKDIVKV-----LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNL-YN 717

Query: 69   KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-----SVDGD 123
            K+  K A I G  M   + HG+ +IY+ L RMAQ  +L    + G+GNFG     S+   
Sbjct: 718  KRT-KSAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQN- 774

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A  RYTE             + K+ VDF PN+DG  +EP++L   +PNVLVN   GIA
Sbjct: 775  --AHMRYTEAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIA 832

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYA 242
            VGMA+  P+ NL EV D  +A I + +I +   +     PDF TG  I      +   Y 
Sbjct: 833  VGMASATPSFNLKEVCDLTIAYIKDTNIVVSDYLLC---PDFATGGFIVRDVDKLNQIYE 889

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV---DIADL 299
            TG+GS+ +R    ++        I+VTEIPY  N+ ++++ I  L RE +     +I ++
Sbjct: 890  TGQGSVTLRAKYEVKDNE-----IIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNV 944

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
             D +DR+G  + I++K+  + ++++ +LY  T LQ  +S+NM  +   K P   ++  IL
Sbjct: 945  IDSTDRKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRIL 1004

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
              ++ FR   + R + Y       + H+L    I + ++D +V I R +           
Sbjct: 1005 DEWLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNA----------- 1053

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD-IRNEL 477
                           IDD            + + Q   +  ++L +L      +    ++
Sbjct: 1054 ---------------IDDDDMIKQLQLYFKIDQEQAEYVSNIKLKKLNKNNIIEITEQQI 1098

Query: 478  NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIV 534
             +L  EI +  +I +  +R+  II Q+L +++D+   PR+T I+          ++  I 
Sbjct: 1099 TALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPSVTLEDIKIE 1158

Query: 535  REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
              +  + ++   Y+K+  +                 ++D+D +      +    +L F++
Sbjct: 1159 DFNPTLVLTEQQYIKKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFTN 1207

Query: 595  LGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVVFAT 652
             G V   KV+ L    P   G  L N+L   L   E++  I              V+   
Sbjct: 1208 KGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTKNY-----KGSVITVF 1262

Query: 653  KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            ++GNV R  L  +             ++  +++S+   T + +ILL ++ G+ +    S 
Sbjct: 1263 ENGNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITDDTNILLVSQEGKALIINTSQ 1322

Query: 713  IRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            IR    RN+ GV G+ +  + ++VI   I +  + ++D +    K        I+ + ++
Sbjct: 1323 IRPTKSRNTQGVAGMKIDTEHNKVIGSIIGVTVEDNFDIKTEKSKSKFIMLDDIAPNGKQ 1382

Query: 772  ITSL 775
              + 
Sbjct: 1383 SMTE 1386



 Score = 67.9 bits (164), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 728  SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             L   D+++      + D            +     L             +   E   ++
Sbjct: 1183 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLEND 1242

Query: 788  ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKINEIGALVA 843
            E+   +   + +   ++TV E G   R     ++   NR         +   N    LV+
Sbjct: 1243 EKVIYISTTKNYKGSVITVFENGNVARIDLKQYKTKQNR------QVPMDAYNTDSKLVS 1296

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
            +  + D+  I+LVS +G  + +  ++IR   SR T+GV       +  +V+ 
Sbjct: 1297 ISVITDDTNILLVSQEGKALIINTSQIRPTKSRNTQGVAGMKIDTEHNKVIG 1348


>gi|52843248|gb|AAU88053.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843252|gb|AAU88055.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 122/198 (61%), Positives = 155/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|331270971|ref|YP_004385682.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
 gi|329127363|gb|AEB77307.1| putative DNA gyrase B subunit [Clostridium botulinum BKT015925]
          Length = 1417

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 208/815 (25%), Positives = 364/815 (44%), Gaps = 79/815 (9%)

Query: 9    DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            D E+EK I  V     +  +YL YAI VI  RAI  + DG KP HR++L+ + +  + +N
Sbjct: 665  DNEQEKDIVKV-----LNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNL-YN 717

Query: 69   KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-----SVDGD 123
            K+  K A I G  M   + HG+ +IY+ L RMAQ  +L    + G+GNFG     S+   
Sbjct: 718  KRT-KSAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQN- 774

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A  RYTE             + K+ VDF PN+DG  +EP++L   +PNVLVN   GIA
Sbjct: 775  --AHMRYTEAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIA 832

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI-LGRTGIKNAYA 242
            VGMA+  P+ NL EV D  +A I + +I +   +     PDF TG  I      +   Y 
Sbjct: 833  VGMASATPSFNLKEVCDLTIAYIKDTNIVVSDYLLC---PDFATGGFIVRDVDKLNQIYE 889

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV---DIADL 299
            TG+GS+ +R    ++        I+VTEIPY  N+ ++++ I  L RE +     +I ++
Sbjct: 890  TGQGSVTLRAKYGVKDNE-----IIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNV 944

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
             D +DR+G  + I++K+  + ++++ +LY  T LQ  +S+NM  +   K P   ++  IL
Sbjct: 945  IDSTDRKGMSITIKIKKNTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRIL 1004

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
              ++ FR   + R + Y       + H+L    I + ++D +V I R +           
Sbjct: 1005 DEWLKFRRMCISRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNA----------- 1053

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD-IRNEL 477
                           IDD            + + Q   +  ++L +L      +    ++
Sbjct: 1054 ---------------IDDDDMIKQLQLYFKIDQEQAEYVSNIKLKKLNKNNIIEITEQQI 1098

Query: 478  NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME---DEDCIV 534
             +L  EI +  +I +  +R+  II Q+L +++D+   PR+T I+          ++  I 
Sbjct: 1099 TALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPSVTLEDIKIE 1158

Query: 535  REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
              +  + ++   Y+K+  +                 ++D+D +      +    +L F++
Sbjct: 1159 DFNPTLVLTEQQYIKKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFTN 1207

Query: 595  LGFVYKEKVWRLPIGSPQARGKALINIL--SLNQGERITTIMPFPEDESSWNNLYVVFAT 652
             G V   KV+ L    P   G  L N+L   L   E +  I    +         VV   
Sbjct: 1208 KGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEEVIYISTTKDY-----KGSVVSVF 1262

Query: 653  KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            ++G + R  L  +             ++  +I+S++  T + DILL ++ G+ +    S 
Sbjct: 1263 ENGYIARTDLQTYKPKQNRQIPMSAYNTDSKIVSIQLITNDTDILLVSQEGKSLIINTSQ 1322

Query: 713  IRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            IR    RN+ GV G+ +  + +++I+  I +  D +++      K        ++ + +E
Sbjct: 1323 IRPTKSRNTQGVSGMKIDIETNKIIASIIGVTVDDNFNIETEKGKSKFIMLNDVAPNGKE 1382

Query: 772  ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
              +     +     +       K  +   LT  E 
Sbjct: 1383 SMTEYLKGNRNTQGNFIYNTRQKNDKVIKLTKQEN 1417



 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 63/172 (36%), Gaps = 12/172 (6%)

Query: 728  SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
             L   D+++      + D            +     L             +   E   ++
Sbjct: 1183 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLEND 1242

Query: 788  ERCQELKLKEQF---ILTVSEKGFGKRTSSYDF-RISNRSGKGIRATDVSKINEIGALVA 843
            E    +   + +   +++V E G+  RT    +    NR         +S  N    +V+
Sbjct: 1243 EEVIYISTTKDYKGSVVSVFENGYIARTDLQTYKPKQNR------QIPMSAYNTDSKIVS 1296

Query: 844  VFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
            +  + ++  I+LVS +G  + +  ++IR   SR T+GV       +  ++++
Sbjct: 1297 IQLITNDTDILLVSQEGKSLIINTSQIRPTKSRNTQGVSGMKIDIETNKIIA 1348


>gi|257472200|gb|ACV53941.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 161/259 (62%), Positives = 206/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+A+ RMAQD++ R  L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYTLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NPDI L  L+EII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELVEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+RGA+A+V+
Sbjct: 241 RNGMRIVIELRRGANANVL 259


>gi|32135167|emb|CAD99014.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 215

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 124/213 (58%), Positives = 161/213 (75%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI 
Sbjct: 3   VDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K 
Sbjct: 63  GAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKL 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E+
Sbjct: 123 SHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNEL 182

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           +DG + ++D+ D  L+ +M+ I+GPDFPTG +I
Sbjct: 183 IDGLLYLLDSKDASLEEIMQFIKGPDFPTGGII 215


>gi|118132713|gb|ABK60209.1| DNA gyrase A [Shigella boydii]
          Length = 198

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 121/198 (61%), Positives = 157/198 (79%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKY
Sbjct: 1   KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKY 60

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ D
Sbjct: 61  HPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAD 120

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           L K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 LEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAY 180

Query: 206 IDNPDIDLDALMEIIRGP 223
           ID+ DI ++ LME I GP
Sbjct: 181 IDDEDISIEGLMEHIPGP 198


>gi|14994221|gb|AAK73346.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|52843250|gb|AAU88054.1| DNA gyrase A [Shigella dysenteriae]
 gi|52843254|gb|AAU88056.1| DNA gyrase A [Shigella dysenteriae]
          Length = 198

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 122/198 (61%), Positives = 156/198 (78%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID
Sbjct: 121 KETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYID 180

Query: 208 NPDIDLDALMEIIRGPDF 225
           + DI ++ LME I GPDF
Sbjct: 181 DEDISIEGLMEHIPGPDF 198


>gi|10717005|gb|AAG22003.1|AF282314_1 gyrase subunit A [Yersinia pestis]
          Length = 177

 Score =  393 bits (1008), Expect = e-106,   Method: Composition-based stats.
 Identities = 115/177 (64%), Positives = 143/177 (80%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR
Sbjct: 1   TPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSAR 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 61  VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMS 120

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP H
Sbjct: 121 KIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPH 177


>gi|313611853|gb|EFR86319.1| DNA gyrase/topoisomerase IV, A subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 207

 Score =  392 bits (1007), Expect = e-106,   Method: Composition-based stats.
 Identities = 120/205 (58%), Positives = 158/205 (77%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLD 214
           IPTH+LGEV+DG +A+  NP+I + 
Sbjct: 183 IPTHHLGEVIDGVLALSHNPEITIR 207


>gi|257472156|gb|ACV53919.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/259 (61%), Positives = 204/259 (78%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G RVVIEL R A+A VI
Sbjct: 241 RNGMRVVIELGRDANAHVI 259


>gi|257472152|gb|ACV53917.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472158|gb|ACV53920.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472160|gb|ACV53921.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472164|gb|ACV53923.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472168|gb|ACV53925.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 159/259 (61%), Positives = 205/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G RVVIEL+R A+A VI
Sbjct: 241 RNGMRVVIELRRDANAHVI 259


>gi|118638612|gb|ABL09463.1| gyrase subunit A [Clostridium difficile]
          Length = 197

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 117/192 (60%), Positives = 152/192 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPDF 225
           D L++ ++GPDF
Sbjct: 181 DDLIKFVQGPDF 192


>gi|4007020|emb|CAA77112.1| topoisomerase IV [Campylobacter jejuni]
          Length = 366

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 153/368 (41%), Positives = 221/368 (60%), Gaps = 13/368 (3%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFG-SVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           L++GQGN+  S D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +
Sbjct: 61  LVDGQGNWRRSPD-DPKSFAAMRYTESRLSKYSELLLSELGRGTADWVPNFDGTLQEPKM 119

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+ID P   LD L++I++GPD+P
Sbjct: 120 LPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPRTTLDQLLDIVQGPDYP 179

Query: 227 T-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           T   +I  R  I+  Y  GRGS+ +R V   E        +V++ +P QV+ A +LE+IA
Sbjct: 180 TEAEIITSRAEIRKMYEKGRGSVRMRAVWKKEDG-----AVVISALPQQVSGARVLEQIA 234

Query: 286 ELVREKRIVDIADLRDESDR-QGYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVA 343
             +R   +  + DLRDESD  +  R+VI  +      D ++N L   T L+  + + +  
Sbjct: 235 AQMRNNNVPMVDDLRDESDHEKPTRLVIVPRSNRVDIDQVMNHLLATTELEKSYRIKLNM 294

Query: 344 LN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           +    +P    L+ IL  ++  R + V RR  Y L K   R H+L G  +   N++EV+ 
Sbjct: 295 IGLDGRPAVKNLLEILSEWLVLRRDTVRRRLNYRLEKVLKRLHMLEGFLVEFLNIEEVID 354

Query: 403 IIRFSPNP 410
           II     P
Sbjct: 355 IIHNEDEP 362


>gi|77169256|gb|ABA63565.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3]
          Length = 399

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 172/427 (40%), Positives = 242/427 (56%), Gaps = 31/427 (7%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G E +  + KCA+I GEVMG YHPHG+ +IYDALAR+AQD+S R  L+ GQGNFG++DGD
Sbjct: 1   GAETDIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE ++   +  LL+ + +D VDFR  YD S  EP+VL   +PN+L NG  GIA
Sbjct: 61  SPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA-VILGRTGIKNAYA 242
           VGMAT+IP+HN  E+ D  + +I +PD  ++ L+E I GPDFPTG  +I  R  I  +Y 
Sbjct: 121 VGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYR 180

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           TGRG   +R     E       QIVVTEIP+QV K+ ++EKIAEL+  +++  + D+RDE
Sbjct: 181 TGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDE 240

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAF 361
           S      V++   R     +++  +++ T L+S F +NM  L+  + P+   L  +LK +
Sbjct: 241 SAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEW 300

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  R EV+ RR+++ L     R  +L GL IA  N+DEV+RIIR    P+          
Sbjct: 301 LDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARW--- 357

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                      L++ Q  AIL +RL  L  L   +IR E + L 
Sbjct: 358 --------------------------DLTDNQVEAILNMRLRALRKLEEFEIRKEFDELT 391

Query: 482 IEIKECL 488
            E  E  
Sbjct: 392 KEKGEIE 398


>gi|77169138|gb|ABA63506.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/307 (57%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TGRG IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGRGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77168996|gb|ABA63435.1| gyrase subunit A [Clostridium perfringens]
 gi|77168998|gb|ABA63436.1| gyrase subunit A [Clostridium perfringens]
 gi|77169002|gb|ABA63438.1| gyrase subunit A [Clostridium perfringens]
 gi|77169012|gb|ABA63443.1| gyrase subunit A [Clostridium perfringens]
 gi|77169014|gb|ABA63444.1| gyrase subunit A [Clostridium perfringens]
 gi|77169016|gb|ABA63445.1| gyrase subunit A [Clostridium perfringens]
 gi|77169018|gb|ABA63446.1| gyrase subunit A [Clostridium perfringens]
 gi|77169024|gb|ABA63449.1| gyrase subunit A [Clostridium perfringens]
 gi|77169030|gb|ABA63452.1| gyrase subunit A [Clostridium perfringens]
 gi|77169032|gb|ABA63453.1| gyrase subunit A [Clostridium perfringens]
 gi|77169034|gb|ABA63454.1| gyrase subunit A [Clostridium perfringens]
 gi|77169072|gb|ABA63473.1| gyrase subunit A [Clostridium perfringens]
 gi|77169102|gb|ABA63488.1| gyrase subunit A [Clostridium perfringens]
 gi|77169104|gb|ABA63489.1| gyrase subunit A [Clostridium perfringens]
 gi|77169194|gb|ABA63534.1| gyrase subunit A [Clostridium perfringens]
 gi|77169196|gb|ABA63535.1| gyrase subunit A [Clostridium perfringens]
 gi|77169206|gb|ABA63540.1| gyrase subunit A [Clostridium perfringens]
 gi|77169208|gb|ABA63541.1| gyrase subunit A [Clostridium perfringens]
 gi|77169240|gb|ABA63557.1| gyrase subunit A [Clostridium perfringens]
 gi|77169276|gb|ABA63575.1| gyrase subunit A [Clostridium perfringens]
 gi|77169332|gb|ABA63603.1| gyrase subunit A [Clostridium perfringens]
 gi|77169334|gb|ABA63604.1| gyrase subunit A [Clostridium perfringens]
 gi|77169374|gb|ABA63624.1| gyrase subunit A [Clostridium perfringens]
 gi|77169380|gb|ABA63627.1| gyrase subunit A [Clostridium perfringens]
 gi|77169396|gb|ABA63635.1| gyrase subunit A [Clostridium perfringens]
 gi|77169398|gb|ABA63636.1| gyrase subunit A [Clostridium perfringens]
 gi|77169444|gb|ABA63659.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169442|gb|ABA63658.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 175/307 (57%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  +V F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYVNFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169328|gb|ABA63601.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMAYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|257472222|gb|ACV53952.1| gyrase subunit A [Bacillus licheniformis]
          Length = 259

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/259 (61%), Positives = 205/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K  RI GEV+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSGRIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV+DG +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TG
Sbjct: 121 GMATNIPPHQLGEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI +R  + IE+TS  +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITLRAKAQIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIEL+R A+A+V+
Sbjct: 241 RNGMRIVIELRRDANANVL 259


>gi|77168988|gb|ABA63431.1| gyrase subunit A [Clostridium perfringens]
 gi|77169130|gb|ABA63502.1| gyrase subunit A [Clostridium perfringens]
 gi|77169146|gb|ABA63510.1| gyrase subunit A [Clostridium perfringens]
 gi|77169150|gb|ABA63512.1| gyrase subunit A [Clostridium perfringens]
 gi|77169158|gb|ABA63516.1| gyrase subunit A [Clostridium perfringens]
 gi|77169294|gb|ABA63584.1| gyrase subunit A [Clostridium perfringens]
 gi|77169350|gb|ABA63612.1| gyrase subunit A [Clostridium perfringens]
 gi|77169352|gb|ABA63613.1| gyrase subunit A [Clostridium perfringens]
 gi|77169404|gb|ABA63639.1| gyrase subunit A [Clostridium perfringens]
 gi|77169406|gb|ABA63640.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77168984|gb|ABA63429.1| gyrase subunit A [Clostridium perfringens]
 gi|77168986|gb|ABA63430.1| gyrase subunit A [Clostridium perfringens]
 gi|77168990|gb|ABA63432.1| gyrase subunit A [Clostridium perfringens]
 gi|77168994|gb|ABA63434.1| gyrase subunit A [Clostridium perfringens]
 gi|77169000|gb|ABA63437.1| gyrase subunit A [Clostridium perfringens]
 gi|77169004|gb|ABA63439.1| gyrase subunit A [Clostridium perfringens]
 gi|77169006|gb|ABA63440.1| gyrase subunit A [Clostridium perfringens]
 gi|77169008|gb|ABA63441.1| gyrase subunit A [Clostridium perfringens]
 gi|77169010|gb|ABA63442.1| gyrase subunit A [Clostridium perfringens]
 gi|77169020|gb|ABA63447.1| gyrase subunit A [Clostridium perfringens]
 gi|77169022|gb|ABA63448.1| gyrase subunit A [Clostridium perfringens]
 gi|77169026|gb|ABA63450.1| gyrase subunit A [Clostridium perfringens]
 gi|77169028|gb|ABA63451.1| gyrase subunit A [Clostridium perfringens]
 gi|77169036|gb|ABA63455.1| gyrase subunit A [Clostridium perfringens]
 gi|77169038|gb|ABA63456.1| gyrase subunit A [Clostridium perfringens]
 gi|77169040|gb|ABA63457.1| gyrase subunit A [Clostridium perfringens]
 gi|77169042|gb|ABA63458.1| gyrase subunit A [Clostridium perfringens]
 gi|77169044|gb|ABA63459.1| gyrase subunit A [Clostridium perfringens]
 gi|77169046|gb|ABA63460.1| gyrase subunit A [Clostridium perfringens]
 gi|77169048|gb|ABA63461.1| gyrase subunit A [Clostridium perfringens]
 gi|77169050|gb|ABA63462.1| gyrase subunit A [Clostridium perfringens]
 gi|77169052|gb|ABA63463.1| gyrase subunit A [Clostridium perfringens]
 gi|77169054|gb|ABA63464.1| gyrase subunit A [Clostridium perfringens]
 gi|77169056|gb|ABA63465.1| gyrase subunit A [Clostridium perfringens]
 gi|77169058|gb|ABA63466.1| gyrase subunit A [Clostridium perfringens]
 gi|77169060|gb|ABA63467.1| gyrase subunit A [Clostridium perfringens]
 gi|77169062|gb|ABA63468.1| gyrase subunit A [Clostridium perfringens]
 gi|77169064|gb|ABA63469.1| gyrase subunit A [Clostridium perfringens]
 gi|77169066|gb|ABA63470.1| gyrase subunit A [Clostridium perfringens]
 gi|77169068|gb|ABA63471.1| gyrase subunit A [Clostridium perfringens]
 gi|77169070|gb|ABA63472.1| gyrase subunit A [Clostridium perfringens]
 gi|77169074|gb|ABA63474.1| gyrase subunit A [Clostridium perfringens]
 gi|77169076|gb|ABA63475.1| gyrase subunit A [Clostridium perfringens]
 gi|77169078|gb|ABA63476.1| gyrase subunit A [Clostridium perfringens]
 gi|77169080|gb|ABA63477.1| gyrase subunit A [Clostridium perfringens]
 gi|77169084|gb|ABA63479.1| gyrase subunit A [Clostridium perfringens]
 gi|77169086|gb|ABA63480.1| gyrase subunit A [Clostridium perfringens]
 gi|77169088|gb|ABA63481.1| gyrase subunit A [Clostridium perfringens]
 gi|77169090|gb|ABA63482.1| gyrase subunit A [Clostridium perfringens]
 gi|77169092|gb|ABA63483.1| gyrase subunit A [Clostridium perfringens]
 gi|77169094|gb|ABA63484.1| gyrase subunit A [Clostridium perfringens]
 gi|77169096|gb|ABA63485.1| gyrase subunit A [Clostridium perfringens]
 gi|77169098|gb|ABA63486.1| gyrase subunit A [Clostridium perfringens]
 gi|77169118|gb|ABA63496.1| gyrase subunit A [Clostridium perfringens]
 gi|77169120|gb|ABA63497.1| gyrase subunit A [Clostridium perfringens]
 gi|77169122|gb|ABA63498.1| gyrase subunit A [Clostridium perfringens]
 gi|77169124|gb|ABA63499.1| gyrase subunit A [Clostridium perfringens]
 gi|77169126|gb|ABA63500.1| gyrase subunit A [Clostridium perfringens]
 gi|77169128|gb|ABA63501.1| gyrase subunit A [Clostridium perfringens]
 gi|77169134|gb|ABA63504.1| gyrase subunit A [Clostridium perfringens]
 gi|77169136|gb|ABA63505.1| gyrase subunit A [Clostridium perfringens]
 gi|77169140|gb|ABA63507.1| gyrase subunit A [Clostridium perfringens]
 gi|77169142|gb|ABA63508.1| gyrase subunit A [Clostridium perfringens]
 gi|77169144|gb|ABA63509.1| gyrase subunit A [Clostridium perfringens]
 gi|77169156|gb|ABA63515.1| gyrase subunit A [Clostridium perfringens]
 gi|77169160|gb|ABA63517.1| gyrase subunit A [Clostridium perfringens]
 gi|77169162|gb|ABA63518.1| gyrase subunit A [Clostridium perfringens]
 gi|77169164|gb|ABA63519.1| gyrase subunit A [Clostridium perfringens]
 gi|77169166|gb|ABA63520.1| gyrase subunit A [Clostridium perfringens]
 gi|77169168|gb|ABA63521.1| gyrase subunit A [Clostridium perfringens]
 gi|77169170|gb|ABA63522.1| gyrase subunit A [Clostridium perfringens]
 gi|77169172|gb|ABA63523.1| gyrase subunit A [Clostridium perfringens]
 gi|77169174|gb|ABA63524.1| gyrase subunit A [Clostridium perfringens]
 gi|77169176|gb|ABA63525.1| gyrase subunit A [Clostridium perfringens]
 gi|77169178|gb|ABA63526.1| gyrase subunit A [Clostridium perfringens]
 gi|77169182|gb|ABA63528.1| gyrase subunit A [Clostridium perfringens]
 gi|77169188|gb|ABA63531.1| gyrase subunit A [Clostridium perfringens]
 gi|77169192|gb|ABA63533.1| gyrase subunit A [Clostridium perfringens]
 gi|77169198|gb|ABA63536.1| gyrase subunit A [Clostridium perfringens]
 gi|77169200|gb|ABA63537.1| gyrase subunit A [Clostridium perfringens]
 gi|77169202|gb|ABA63538.1| gyrase subunit A [Clostridium perfringens]
 gi|77169204|gb|ABA63539.1| gyrase subunit A [Clostridium perfringens]
 gi|77169210|gb|ABA63542.1| gyrase subunit A [Clostridium perfringens]
 gi|77169214|gb|ABA63544.1| gyrase subunit A [Clostridium perfringens]
 gi|77169216|gb|ABA63545.1| gyrase subunit A [Clostridium perfringens]
 gi|77169218|gb|ABA63546.1| gyrase subunit A [Clostridium perfringens]
 gi|77169220|gb|ABA63547.1| gyrase subunit A [Clostridium perfringens]
 gi|77169222|gb|ABA63548.1| gyrase subunit A [Clostridium perfringens]
 gi|77169224|gb|ABA63549.1| gyrase subunit A [Clostridium perfringens]
 gi|77169226|gb|ABA63550.1| gyrase subunit A [Clostridium perfringens]
 gi|77169228|gb|ABA63551.1| gyrase subunit A [Clostridium perfringens]
 gi|77169230|gb|ABA63552.1| gyrase subunit A [Clostridium perfringens]
 gi|77169232|gb|ABA63553.1| gyrase subunit A [Clostridium perfringens]
 gi|77169234|gb|ABA63554.1| gyrase subunit A [Clostridium perfringens]
 gi|77169236|gb|ABA63555.1| gyrase subunit A [Clostridium perfringens]
 gi|77169238|gb|ABA63556.1| gyrase subunit A [Clostridium perfringens]
 gi|77169242|gb|ABA63558.1| gyrase subunit A [Clostridium perfringens]
 gi|77169244|gb|ABA63559.1| gyrase subunit A [Clostridium perfringens]
 gi|77169246|gb|ABA63560.1| gyrase subunit A [Clostridium perfringens]
 gi|77169248|gb|ABA63561.1| gyrase subunit A [Clostridium perfringens]
 gi|77169250|gb|ABA63562.1| gyrase subunit A [Clostridium perfringens]
 gi|77169252|gb|ABA63563.1| gyrase subunit A [Clostridium perfringens]
 gi|77169254|gb|ABA63564.1| gyrase subunit A [Clostridium perfringens]
 gi|77169258|gb|ABA63566.1| gyrase subunit A [Clostridium perfringens]
 gi|77169260|gb|ABA63567.1| gyrase subunit A [Clostridium perfringens]
 gi|77169262|gb|ABA63568.1| gyrase subunit A [Clostridium perfringens]
 gi|77169264|gb|ABA63569.1| gyrase subunit A [Clostridium perfringens]
 gi|77169266|gb|ABA63570.1| gyrase subunit A [Clostridium perfringens]
 gi|77169268|gb|ABA63571.1| gyrase subunit A [Clostridium perfringens]
 gi|77169270|gb|ABA63572.1| gyrase subunit A [Clostridium perfringens]
 gi|77169272|gb|ABA63573.1| gyrase subunit A [Clostridium perfringens]
 gi|77169274|gb|ABA63574.1| gyrase subunit A [Clostridium perfringens]
 gi|77169278|gb|ABA63576.1| gyrase subunit A [Clostridium perfringens]
 gi|77169280|gb|ABA63577.1| gyrase subunit A [Clostridium perfringens]
 gi|77169282|gb|ABA63578.1| gyrase subunit A [Clostridium perfringens]
 gi|77169284|gb|ABA63579.1| gyrase subunit A [Clostridium perfringens]
 gi|77169286|gb|ABA63580.1| gyrase subunit A [Clostridium perfringens]
 gi|77169288|gb|ABA63581.1| gyrase subunit A [Clostridium perfringens]
 gi|77169290|gb|ABA63582.1| gyrase subunit A [Clostridium perfringens]
 gi|77169292|gb|ABA63583.1| gyrase subunit A [Clostridium perfringens]
 gi|77169296|gb|ABA63585.1| gyrase subunit A [Clostridium perfringens]
 gi|77169298|gb|ABA63586.1| gyrase subunit A [Clostridium perfringens]
 gi|77169300|gb|ABA63587.1| gyrase subunit A [Clostridium perfringens]
 gi|77169302|gb|ABA63588.1| gyrase subunit A [Clostridium perfringens]
 gi|77169304|gb|ABA63589.1| gyrase subunit A [Clostridium perfringens]
 gi|77169306|gb|ABA63590.1| gyrase subunit A [Clostridium perfringens]
 gi|77169308|gb|ABA63591.1| gyrase subunit A [Clostridium perfringens]
 gi|77169310|gb|ABA63592.1| gyrase subunit A [Clostridium perfringens]
 gi|77169312|gb|ABA63593.1| gyrase subunit A [Clostridium perfringens]
 gi|77169314|gb|ABA63594.1| gyrase subunit A [Clostridium perfringens]
 gi|77169316|gb|ABA63595.1| gyrase subunit A [Clostridium perfringens]
 gi|77169318|gb|ABA63596.1| gyrase subunit A [Clostridium perfringens]
 gi|77169320|gb|ABA63597.1| gyrase subunit A [Clostridium perfringens]
 gi|77169322|gb|ABA63598.1| gyrase subunit A [Clostridium perfringens]
 gi|77169324|gb|ABA63599.1| gyrase subunit A [Clostridium perfringens]
 gi|77169326|gb|ABA63600.1| gyrase subunit A [Clostridium perfringens]
 gi|77169330|gb|ABA63602.1| gyrase subunit A [Clostridium perfringens]
 gi|77169336|gb|ABA63605.1| gyrase subunit A [Clostridium perfringens]
 gi|77169338|gb|ABA63606.1| gyrase subunit A [Clostridium perfringens]
 gi|77169340|gb|ABA63607.1| gyrase subunit A [Clostridium perfringens]
 gi|77169342|gb|ABA63608.1| gyrase subunit A [Clostridium perfringens]
 gi|77169344|gb|ABA63609.1| gyrase subunit A [Clostridium perfringens]
 gi|77169346|gb|ABA63610.1| gyrase subunit A [Clostridium perfringens]
 gi|77169348|gb|ABA63611.1| gyrase subunit A [Clostridium perfringens]
 gi|77169354|gb|ABA63614.1| gyrase subunit A [Clostridium perfringens]
 gi|77169356|gb|ABA63615.1| gyrase subunit A [Clostridium perfringens]
 gi|77169358|gb|ABA63616.1| gyrase subunit A [Clostridium perfringens]
 gi|77169360|gb|ABA63617.1| gyrase subunit A [Clostridium perfringens]
 gi|77169362|gb|ABA63618.1| gyrase subunit A [Clostridium perfringens]
 gi|77169364|gb|ABA63619.1| gyrase subunit A [Clostridium perfringens]
 gi|77169366|gb|ABA63620.1| gyrase subunit A [Clostridium perfringens]
 gi|77169368|gb|ABA63621.1| gyrase subunit A [Clostridium perfringens]
 gi|77169370|gb|ABA63622.1| gyrase subunit A [Clostridium perfringens]
 gi|77169376|gb|ABA63625.1| gyrase subunit A [Clostridium perfringens]
 gi|77169378|gb|ABA63626.1| gyrase subunit A [Clostridium perfringens]
 gi|77169382|gb|ABA63628.1| gyrase subunit A [Clostridium perfringens]
 gi|77169384|gb|ABA63629.1| gyrase subunit A [Clostridium perfringens]
 gi|77169386|gb|ABA63630.1| gyrase subunit A [Clostridium perfringens]
 gi|77169388|gb|ABA63631.1| gyrase subunit A [Clostridium perfringens]
 gi|77169390|gb|ABA63632.1| gyrase subunit A [Clostridium perfringens]
 gi|77169392|gb|ABA63633.1| gyrase subunit A [Clostridium perfringens]
 gi|77169394|gb|ABA63634.1| gyrase subunit A [Clostridium perfringens]
 gi|77169400|gb|ABA63637.1| gyrase subunit A [Clostridium perfringens]
 gi|77169402|gb|ABA63638.1| gyrase subunit A [Clostridium perfringens]
 gi|77169408|gb|ABA63641.1| gyrase subunit A [Clostridium perfringens]
 gi|77169410|gb|ABA63642.1| gyrase subunit A [Clostridium perfringens]
 gi|77169412|gb|ABA63643.1| gyrase subunit A [Clostridium perfringens]
 gi|77169414|gb|ABA63644.1| gyrase subunit A [Clostridium perfringens]
 gi|77169416|gb|ABA63645.1| gyrase subunit A [Clostridium perfringens]
 gi|77169418|gb|ABA63646.1| gyrase subunit A [Clostridium perfringens]
 gi|77169420|gb|ABA63647.1| gyrase subunit A [Clostridium perfringens]
 gi|77169422|gb|ABA63648.1| gyrase subunit A [Clostridium perfringens]
 gi|77169424|gb|ABA63649.1| gyrase subunit A [Clostridium perfringens]
 gi|77169426|gb|ABA63650.1| gyrase subunit A [Clostridium perfringens]
 gi|77169428|gb|ABA63651.1| gyrase subunit A [Clostridium perfringens]
 gi|77169430|gb|ABA63652.1| gyrase subunit A [Clostridium perfringens]
 gi|77169432|gb|ABA63653.1| gyrase subunit A [Clostridium perfringens]
 gi|77169434|gb|ABA63654.1| gyrase subunit A [Clostridium perfringens]
 gi|77169436|gb|ABA63655.1| gyrase subunit A [Clostridium perfringens]
 gi|77169438|gb|ABA63656.1| gyrase subunit A [Clostridium perfringens]
 gi|77169440|gb|ABA63657.1| gyrase subunit A [Clostridium perfringens]
 gi|77169446|gb|ABA63660.1| gyrase subunit A [Clostridium perfringens]
 gi|77169448|gb|ABA63661.1| gyrase subunit A [Clostridium perfringens]
 gi|77169450|gb|ABA63662.1| gyrase subunit A [Clostridium perfringens]
 gi|77169452|gb|ABA63663.1| gyrase subunit A [Clostridium perfringens]
 gi|77169454|gb|ABA63664.1| gyrase subunit A [Clostridium perfringens]
 gi|77169456|gb|ABA63665.1| gyrase subunit A [Clostridium perfringens]
 gi|77169458|gb|ABA63666.1| gyrase subunit A [Clostridium perfringens]
 gi|77169460|gb|ABA63667.1| gyrase subunit A [Clostridium perfringens]
 gi|77169462|gb|ABA63668.1| gyrase subunit A [Clostridium perfringens]
 gi|77169464|gb|ABA63669.1| gyrase subunit A [Clostridium perfringens]
 gi|77169466|gb|ABA63670.1| gyrase subunit A [Clostridium perfringens]
 gi|77169468|gb|ABA63671.1| gyrase subunit A [Clostridium perfringens]
 gi|77169470|gb|ABA63672.1| gyrase subunit A [Clostridium perfringens]
 gi|77169472|gb|ABA63673.1| gyrase subunit A [Clostridium perfringens]
 gi|77169474|gb|ABA63674.1| gyrase subunit A [Clostridium perfringens]
 gi|77169476|gb|ABA63675.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|77169132|gb|ABA63503.1| gyrase subunit A [Clostridium perfringens]
 gi|77169148|gb|ABA63511.1| gyrase subunit A [Clostridium perfringens]
 gi|77169152|gb|ABA63513.1| gyrase subunit A [Clostridium perfringens]
 gi|77169154|gb|ABA63514.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  391 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFT 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|221061465|ref|XP_002262302.1| dna gyrase a-subunit [Plasmodium knowlesi strain H]
 gi|193811452|emb|CAQ42180.1| dna gyrase a-subunit, putative [Plasmodium knowlesi strain H]
          Length = 1173

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 204/931 (21%), Positives = 397/931 (42%), Gaps = 96/931 (10%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++ +  S    +     V I D +  ++L+YA  +IL R + D RDGLK V RRI++ M 
Sbjct: 159  SDLVDESIRGIKGEYHDVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMY 218

Query: 62   QMGVEWNKK-YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++     K  Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV
Sbjct: 219  EINKGAEKSSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSV 278

Query: 121  DGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            +    AA RYTE ++    +  LLD++  + +++  N+DG+  EP VLC++ P +L+NG 
Sbjct: 279  EY-NAAAMRYTEAKVSNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGC 337

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IK 238
             GIAV + +NIP HNL +V++  ++ + + +I  D L  II+GPDF TG +I+ +   ++
Sbjct: 338  SGIAVSILSNIPCHNLVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQ 397

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIV----------------------VTEIPYQVN 276
            N Y TG+G+I IR    +E T  D+ Q++                      +  +P  V 
Sbjct: 398  NVYQTGKGNIEIRSNVFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVK 457

Query: 277  KAAMLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADV---ILNQLYRY 330
               ++E +  ++ EK+      +  +RDES+++  R+V+EL++ +  +     ++ +++Y
Sbjct: 458  PNELIENMINILNEKKNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKY 517

Query: 331  TSLQSLFSVNMVAL-NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            T +Q  +  N V + +     +F+L   L+ +   R   + +         +   H++  
Sbjct: 518  TQMQITYHCNFVCIGHQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDL 577

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
              +    + E++  ++ + N E  +    +                             L
Sbjct: 578  YILIQKKILEIISFLQKNQNIEEIKNFFKE--------------------------NFKL 611

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
            ++ Q   IL +++ +L  +   D       +   +++  D++S+  ++  +I  +L  +K
Sbjct: 612  NDYQIHHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRLIIDQLTYIK 671

Query: 510  DEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            ++   ++  R       +          E          + K   L++  A+R G  G  
Sbjct: 672  NKYGINSVGR-FAPPQSVKYRYVYINPPE-------RNHHFKEHSLALVNAERDGPSGYG 723

Query: 568  GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            G     +         +    +          +  V       P+AR    +  +     
Sbjct: 724  GDAEDLKGERKISKKDTLSDEI----RNQEEQQTPVED--PALPKARNLRGVKKIDPTTQ 777

Query: 628  ERITTIMPFPED--ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             R T I     D      N+  +V  T  G V++ K++   ++       +KL +   + 
Sbjct: 778  YRQTYIDSIHTDVKNVYNNDYVLVLITYGGYVKKIKVA--EKLKNHQNNIIKLSN---VK 832

Query: 686  SVETCTQENDILLTTKLGQCVRFPISAIRV-FAGRNSVGVRGISLAK-GDQVISMAIVLH 743
             +    +E  +    K G       + +     G NS+  +  SL       +  +I+  
Sbjct: 833  YILKENEEKKL----KDGGAPVEAANVVESGEEGANSMSAKSSSLNAINCYKVKKSILCR 888

Query: 744  ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                        K        +   + +      +  +  + +     + +  +++++  
Sbjct: 889  NKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKNITGMTKFEENKKYLIVC 948

Query: 804  SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
            SE G  K  ++  F    +  KGIR       N+    +     N +D  I+ +  G +I
Sbjct: 949  SENGKMKVINNDVFLKKKK--KGIRLFK----NKKD--IHFSYCNFSDNCIVGTASGHII 1000

Query: 864  RVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + P+   +I+ + + G    +  K+++VV +
Sbjct: 1001 QFPLANFKISKKNSLGNKCINLGKNDKVVDL 1031



 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 105/317 (33%), Gaps = 88/317 (27%)

Query: 578  TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
                +      +L   S    Y   V+ L   S  ++G  +  ++  ++     T     
Sbjct: 882  KKSILCRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKNITGMTKF--- 938

Query: 638  EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
                  N  Y++  +++G ++      F++  + G   ++L    + +    C   ++ +
Sbjct: 939  ----EENKKYLIVCSENGKMKVINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCI 991

Query: 698  LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            + T  G  ++FP++  +  + +NS+G + I+L K D+V+ +    + + +          
Sbjct: 992  VGTASGHIIQFPLANFK-ISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQ----- 1045

Query: 758  MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                      I+ +S+ G GK  +  + 
Sbjct: 1046 ------------------------------------------IIFLSKGGHGKMINLEEL 1063

Query: 818  RISNRSGKGIRATDVSKINEI----GALV--------------------------AVFPV 847
            ++  + GKG +     +        G +                            +   
Sbjct: 1064 KVQKKKGKGYKIMKFKRAKRDAVLQGEVAKEEDKENKNHEKYVKDADEFLGFKLYDMTKK 1123

Query: 848  NDNDQIILVSDKGTLIR 864
            NDND +I+++D   LIR
Sbjct: 1124 NDNDFLIMITDHAILIR 1140


>gi|77169106|gb|ABA63490.1| gyrase subunit A [Clostridium perfringens]
 gi|77169108|gb|ABA63491.1| gyrase subunit A [Clostridium perfringens]
 gi|77169110|gb|ABA63492.1| gyrase subunit A [Clostridium perfringens]
 gi|77169112|gb|ABA63493.1| gyrase subunit A [Clostridium perfringens]
 gi|77169114|gb|ABA63494.1| gyrase subunit A [Clostridium perfringens]
 gi|77169116|gb|ABA63495.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 174/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQVLNLKQVLVHYINFQKDVITRRTRFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|110589971|gb|ABG77432.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 155/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEHIPGPDF 194


>gi|13810783|gb|AAK40036.1|AF272026_1 DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 247

 Score =  390 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 149/247 (60%), Positives = 194/247 (78%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFG
Sbjct: 1   AMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           SVDGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG
Sbjct: 61  SVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+
Sbjct: 121 AAGIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIR 180

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
            AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I D
Sbjct: 181 KAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITD 240

Query: 299 LRDESDR 305
           LRDESDR
Sbjct: 241 LRDESDR 247


>gi|114224639|gb|ABI55204.1| DNA gyrase A [Shigella flexneri]
          Length = 196

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 121/196 (61%), Positives = 155/196 (79%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ 
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDE 180

Query: 210 DIDLDALMEIIRGPDF 225
           DI ++ LME I GPDF
Sbjct: 181 DISIEGLMEHIPGPDF 196


>gi|77168992|gb|ABA63433.1| gyrase subunit A [Clostridium perfringens]
 gi|77169082|gb|ABA63478.1| gyrase subunit A [Clostridium perfringens]
 gi|77169100|gb|ABA63487.1| gyrase subunit A [Clostridium perfringens]
 gi|77169180|gb|ABA63527.1| gyrase subunit A [Clostridium perfringens]
 gi|77169184|gb|ABA63529.1| gyrase subunit A [Clostridium perfringens]
 gi|77169186|gb|ABA63530.1| gyrase subunit A [Clostridium perfringens]
 gi|77169190|gb|ABA63532.1| gyrase subunit A [Clostridium perfringens]
 gi|77169212|gb|ABA63543.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+D+V+
Sbjct: 300 DNIDDVI 306


>gi|257472154|gb|ACV53918.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472162|gb|ACV53922.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472166|gb|ACV53924.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472178|gb|ACV53930.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472180|gb|ACV53931.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472182|gb|ACV53932.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472184|gb|ACV53933.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472194|gb|ACV53938.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472202|gb|ACV53942.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472204|gb|ACV53943.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|257472206|gb|ACV53944.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 157/259 (60%), Positives = 208/259 (80%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A+VI
Sbjct: 241 RTGMRIVIEIRRDANANVI 259


>gi|23429757|gb|AAN23864.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  389 bits (1000), Expect = e-105,   Method: Composition-based stats.
 Identities = 118/194 (60%), Positives = 153/194 (78%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L +GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLADGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|77169372|gb|ABA63623.1| gyrase subunit A [Clostridium perfringens]
          Length = 306

 Score =  389 bits (999), Expect = e-105,   Method: Composition-based stats.
 Identities = 173/307 (56%), Positives = 237/307 (77%), Gaps = 1/307 (0%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DAL RMAQD+SLR +L++G GNFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF 
Sbjct: 1   DALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFI 60

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++   
Sbjct: 61  PNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSL 120

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
            LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQ
Sbjct: 121 ELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQ 179

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           VNKA ++E IA++V++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q
Sbjct: 180 VNKAKLIEYIADIVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQ 239

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
             F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+
Sbjct: 240 DTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIAL 299

Query: 395 ANLDEVV 401
            N+DEV+
Sbjct: 300 DNIDEVI 306


>gi|257472170|gb|ACV53926.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/259 (60%), Positives = 204/259 (78%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A VI
Sbjct: 241 RNGMRIVIEIRRDANAHVI 259


>gi|190351702|gb|ACE76308.1| GyrA [Clostridium difficile]
          Length = 192

 Score =  389 bits (998), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 152/192 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHGN A+Y
Sbjct: 1   SVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
            A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+
Sbjct: 61  YAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFK 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +D
Sbjct: 121 PNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVD 180

Query: 215 ALMEIIRGPDFP 226
            L++ ++GPDFP
Sbjct: 181 DLIKFVQGPDFP 192


>gi|262477434|gb|ACY68194.1| DNA gyrase subunit A [Escherichia coli]
          Length = 199

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 122/198 (61%), Positives = 156/198 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC++ ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLSYIDDEDI 180

Query: 212 DLDALMEIIRGPDFPTGA 229
            ++ LME I GPDFPT A
Sbjct: 181 SIEGLMEHIPGPDFPTAA 198


>gi|23429770|gb|AAN23865.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 195

 Score =  388 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 117/194 (60%), Positives = 154/194 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+LF + ++G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAVNELGNDWNKPYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL
Sbjct: 61  PHGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADL 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            K+TVD+ PNYDG+   P V+  + PN+LVNG  G AVGMATNIP HNL E+V+GC+A+I
Sbjct: 121 DKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGFAVGMATNIPPHNLTEIVNGCLALI 180

Query: 207 DNPDIDLDALMEII 220
           +N D  +D LM  I
Sbjct: 181 ENGDRTIDELMTYI 194


>gi|257472172|gb|ACV53927.1| gyrase subunit A [Bacillus amyloliquefaciens]
 gi|257472174|gb|ACV53928.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 259

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/259 (60%), Positives = 205/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K A  +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A VI
Sbjct: 241 RNGMRIVIEIRRDANAHVI 259


>gi|110589967|gb|ABG77430.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 121/194 (62%), Positives = 154/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|119444309|gb|ABL75397.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444311|gb|ABL75398.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444313|gb|ABL75399.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444317|gb|ABL75401.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444323|gb|ABL75404.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444331|gb|ABL75408.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444333|gb|ABL75409.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|119444337|gb|ABL75411.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|119444339|gb|ABL75412.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/249 (61%), Positives = 199/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G R+VI
Sbjct: 241 DRTGMRIVI 249


>gi|31745487|gb|AAP55217.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 183

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 113/183 (61%), Positives = 147/183 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV+
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVI 180

Query: 200 DGC 202
           +GC
Sbjct: 181 NGC 183


>gi|297519073|ref|ZP_06937459.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 248

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 119/244 (48%), Positives = 169/244 (69%), Gaps = 4/244 (1%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGV 253
           L EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRGS+ +R V
Sbjct: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244

Query: 254 SHIE 257
              E
Sbjct: 245 WKKE 248


>gi|257472176|gb|ACV53929.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 156/259 (60%), Positives = 207/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +  Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDHPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A+VI
Sbjct: 241 RTGMRIVIEIRRDANANVI 259


>gi|308447920|ref|XP_003087560.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
 gi|308254760|gb|EFO98712.1| hypothetical protein CRE_22752 [Caenorhabditis remanei]
          Length = 664

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/618 (26%), Positives = 259/618 (41%), Gaps = 26/618 (4%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  ++I DE+++SYL YA++VI+ RA+PD+RDGLKPVHRR+LF M ++G ++NK Y K
Sbjct: 4   SEIRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKK 63

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE 
Sbjct: 64  SARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEV 123

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           R++K  H +L DL KDTV++  NYDGS + P V+  R PN+L+NG  GIAVGMATN+  H
Sbjct: 124 RMRKLTHEMLADLEKDTVEWEDNYDGSERIPQVMPTRIPNLLINGVTGIAVGMATNMAPH 183

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGV 253
           N+ EVV+  +   +   + +         P     A   G  G          S+     
Sbjct: 184 NMTEVVNAYLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRG------KSATSMKEDDY 237

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
                 + +   ++      +V +  + E        K    +  L  +++     +   
Sbjct: 238 IQHLIVTSNHATVLCFTNVGKVYRLRVFEVPQASRGAKGRPMVNLLPLDAEET---ITAI 294

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L    +      +L   T  ++    N+  L            +  AF    E       
Sbjct: 295 LPVIDAPKKFTERL---TEFRTFVRANVAQLRENTIIDSHYEALKAAFAELGENP----- 346

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
             L +  R +   +     A    DE++    F+   E+ R+        AS     ++L
Sbjct: 347 DDLSDALRKQLKEIGIELSASDLDDELIA--EFAERVESVRKNFYVFMATASGTVKRVEL 404

Query: 434 IDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
               +        + L E  T    AI +     +             +    +      
Sbjct: 405 EQFGNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKG 464

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--IVREDMVVTVSHLGYV 548
           +      L   + E     D       T      +         +     V+  S  GY 
Sbjct: 465 VRGMRVALAAAQTEEDVEVDVDSDDEDTADSNTNVVSRIVSLVVVPETGEVLCASANGYG 524

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR P+  +  ++RGGKG   +   + +      +    +  L   S G        R   
Sbjct: 525 KRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDESKELMLISDGGT--LVRTRASE 582

Query: 609 GSPQARGKALINILSLNQ 626
            +   R    + ++ L  
Sbjct: 583 VARTGRNAQGVRLIRLGN 600



 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 64/243 (26%), Positives = 102/243 (41%), Gaps = 29/243 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            N YV  AT  G V+R +L  F  +  +G  A++L   D ++ V     E  I+L +  G
Sbjct: 386 KNFYVFMATASGTVKRVELEQFGNVRSNGLRAIELKEEDTLIGVAITDGEQQIMLFSNEG 445

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           + +RF  +  RV  GR + GVRG+ +A                            +AQ  
Sbjct: 446 KAIRFSETDARVM-GRTAKGVRGMRVA--------------------------LAAAQTE 478

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                  +        S    +S      +  +   +L  S  G+GKRT   DF    R 
Sbjct: 479 EDVEVDVDSDDEDTADSNTNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRG 538

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKG+ A   S+ N  G LV    ++++ +++L+SD GTL+R   +E+    R  +GV + 
Sbjct: 539 GKGVIAIKTSERN--GELVGAVAIDESKELMLISDGGTLVRTRASEVARTGRNAQGVRLI 596

Query: 884 STA 886
              
Sbjct: 597 RLG 599



 Score = 63.7 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 97/312 (31%), Gaps = 32/312 (10%)

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              D     +E  T         R       +     +          ++  +   L   
Sbjct: 296 PVIDAPKKFTERLTEF---RTFVRANVAQLRENTIIDSHYEALKAAFAELGENPDDLSDA 352

Query: 501 IKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV--SHLGYVKRVPLSVYRA 558
           ++++L  +  EL     + + + L+    E              +  G VKRV L  +  
Sbjct: 353 LRKQLKEIGIELSA---SDLDDELIAEFAERVESVRKNFYVFMATASGTVKRVELEQFGN 409

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            R  G     + +++ED +  + I      ++ FS+ G   +       +    A+G   
Sbjct: 410 VRSNG--LRAIELKEEDTLIGVAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRG 467

Query: 619 IN------------------ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
           +                               +              V+ A+ +G  +R 
Sbjct: 468 MRVALAAAQTEEDVEVDVDSDDEDTADSNTNVVSRIVSLVVVPETGEVLCASANGYGKRT 527

Query: 661 KLSDFIQINR--SGKIAMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            + DF    R   G IA+K      E++      +  +++L +  G  VR   S +    
Sbjct: 528 PVDDFPTKKRGGKGVIAIKTSERNGELVGAVAIDESKELMLISDGGTLVRTRASEV-ART 586

Query: 718 GRNSVGVRGISL 729
           GRN+ GVR I L
Sbjct: 587 GRNAQGVRLIRL 598


>gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 672

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 207/708 (29%), Positives = 318/708 (44%), Gaps = 70/708 (9%)

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+SLR  LI+GQGNFGS DGD  AA RYTE RL   +  LLD++ + TVDF PNYDGS
Sbjct: 1   AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
           F+EP  L +R P VL+NG  GIAVG+AT IP+HNL EV    VA+I NP +    LM +I
Sbjct: 61  FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120

Query: 221 RGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
            GPDFP G  I+     I  AY TGRGS+ +R    IE  +  + Q+VVTE+P   +   
Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180

Query: 280 MLEKIAELVREKRIVDIADLRDE-------------------SDRQGYRVVIELKRGASA 320
           +LE+I EL   K  +    L  E                         R+V E K     
Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240

Query: 321 D-VILNQLYRYTSLQSLFSVNMVALNGY-KPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
               +N L  +TSL+S  ++N+V +    +P +  L+ IL  +V FR++ + RR ++ L 
Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           K  DR H+L G  I   N+DEV+RIIR S  P+ A                         
Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAA------------------------- 335

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                     L+E Q   ILE+RL +L  L +  I  EL +L  E  +  D+L++ + + 
Sbjct: 336 ----LMSAFGLTERQADDILEIRLRQLARLEKIKIEKELEALRDEKAKLEDLLANDNAMK 391

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRA 558
            ++ +E+ +   +    RRT +++       E  +V E + V VS  G+V        RA
Sbjct: 392 RLMIKEIEADAKQYGDDRRT-LIQQEKRATFEAKVVDEPVTVVVSQKGWV--------RA 442

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            +  G   +    +  D +   F   T   ++ + S G VY   V  LP G     G  +
Sbjct: 443 LKGHGLDPASFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGD--GVPV 500

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
            +++ L  G             ++  +  ++ A+ +G     K+ D +   ++GK  M +
Sbjct: 501 TSLIELESGSH------LMHYYAAAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTI 554

Query: 679 DSRDEILSVETCTQE-NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           D+    L+          +   +  G+ + F I  ++  +G    GV  ++L   + ++ 
Sbjct: 555 DAGAVPLAPMPVLPNATQVACLSSGGRLLVFGIDEMKTLSG-GGRGVTLMALDDKETLVQ 613

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              +  A           K                   +   + +  +
Sbjct: 614 ALAIDPAGVVLIGTGRGGKVQDETLSYAGLAPHVGKRARKGRTPDTKL 661



 Score = 41.3 bits (95), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 6/166 (3%)

Query: 727 ISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS 786
            S   GD + +       D           +      L  G  + +          G+  
Sbjct: 453 FSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSHL 512

Query: 787 EERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                     +Q +L  S  GFG      D     ++GK     D   +     L  +  
Sbjct: 513 MHYYA--AAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDAGAV----PLAPMPV 566

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           + +  Q+  +S  G L+   ++E++  S   +GV + +    E +V
Sbjct: 567 LPNATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDDKETLV 612


>gi|119444335|gb|ABL75410.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/249 (61%), Positives = 198/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G R+VI
Sbjct: 241 DRTGMRIVI 249


>gi|119444319|gb|ABL75402.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  387 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/249 (61%), Positives = 199/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPD+ +  LME+I GPDFPT   ILGR+GI+ AY T
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDMTISELMEVIPGPDFPTAGQILGRSGIRKAYET 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G R+VI
Sbjct: 241 DRTGMRIVI 249


>gi|110589965|gb|ABG77429.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589973|gb|ABG77433.1| DNA gyrase A [Shigella flexneri]
          Length = 194

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 120/194 (61%), Positives = 153/194 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|119444327|gb|ABL75406.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 152/249 (61%), Positives = 199/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G R+VI
Sbjct: 241 DRTGMRIVI 249


>gi|118638610|gb|ABL09462.1| gyrase subunit A [Clostridium difficile]
          Length = 194

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 116/191 (60%), Positives = 151/191 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPD 224
           D L++ ++GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|49425508|gb|AAT66069.1| DNA gyrase A [Shigella dysenteriae]
          Length = 193

 Score =  386 bits (990), Expect = e-104,   Method: Composition-based stats.
 Identities = 118/193 (61%), Positives = 152/193 (78%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           +A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+T
Sbjct: 61  SAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKET 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+  ID+ D
Sbjct: 121 VDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLVYIDDED 180

Query: 211 IDLDALMEIIRGP 223
           I ++ LME I GP
Sbjct: 181 ISIEGLMEHIPGP 193


>gi|110589963|gb|ABG77428.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589969|gb|ABG77431.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589975|gb|ABG77434.1| DNA gyrase A [Shigella flexneri 2a]
 gi|110589977|gb|ABG77435.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 194

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/194 (61%), Positives = 154/194 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDL 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEIIRGPDF 225
            ++ LME I GPDF
Sbjct: 181 SIEGLMEYIPGPDF 194


>gi|119444329|gb|ABL75407.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/249 (60%), Positives = 198/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G ++VI
Sbjct: 241 DRTGMKIVI 249


>gi|257362206|gb|ACV53188.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|19569753|gb|AAL92168.1| GyrA protein [Bacillus amyloliquefaciens]
          Length = 244

 Score =  385 bits (989), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/244 (60%), Positives = 192/244 (78%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSV
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAA 120

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGEV+DG +AV +NP+I +  LME I GPDFPT   ILGR+GI+ A
Sbjct: 121 GIAVGMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKA 180

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 181 YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLR 240

Query: 301 DESD 304
           DESD
Sbjct: 241 DESD 244


>gi|118638608|gb|ABL09461.1| gyrase subunit A [Clostridium difficile]
          Length = 195

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 116/191 (60%), Positives = 151/191 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+
Sbjct: 1   MSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF
Sbjct: 61  YYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           +PN+D S +EP VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +
Sbjct: 121 KPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSV 180

Query: 214 DALMEIIRGPD 224
           D L++ ++GPD
Sbjct: 181 DDLIKFVQGPD 191


>gi|257362181|gb|ACV53180.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 149/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|124806110|ref|XP_001350630.1| DNA gyrase subunit A;evidence=inferred from direct assay [Plasmodium
            falciparum 3D7]
 gi|23496755|gb|AAN36310.1| DNA gyrase subunit A;evidence=inferred from direct assay [Plasmodium
            falciparum 3D7]
          Length = 1222

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 200/947 (21%), Positives = 395/947 (41%), Gaps = 90/947 (9%)

Query: 3    EHIISSDEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
            ++I ++  E  K I      V I + +  S+L+YA  +IL R + D RDGLK V RRI++
Sbjct: 155  DNINNNINESRKLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIW 214

Query: 59   GMMQMGVEWNKK-YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
             M ++    +KK Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      LLI+G GNF
Sbjct: 215  SMYEINKGIDKKGYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNF 274

Query: 118  GSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            GSV+    AA RYTE ++    +  LLD++  + V++  N+DG+ +EP VLC++ P +L+
Sbjct: 275  GSVEY-NAAAMRYTEAKISSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLI 333

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GIAV + ++IP HNL +V + C+  + N +I  D L  II+GPDF TG +I+ +  
Sbjct: 334  NGCSGIAVSILSSIPCHNLIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYD 393

Query: 237  I-KNAYATGRGSIVIRGVSHIEKTSGDRE----------------------QIVVTEIPY 273
            I KN Y +G+G+  IR     E    D++                      +I++  +P 
Sbjct: 394  ILKNIYNSGKGNFEIRSNVFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPP 453

Query: 274  QVNKAAMLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILN---QL 327
             V    ++E I  L+ +K+      +  +RDES+++  R+V+ELK+ +  + I N    L
Sbjct: 454  NVKPNELIENIINLLNDKKNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYL 513

Query: 328  YRYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
            ++YT++Q  +  N V +       +F+L   +K +   R + +    +      + + ++
Sbjct: 514  FKYTNMQISYHCNFVCIGYENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNI 573

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
            +    I    + +++   + + N E                             +     
Sbjct: 574  IDLYLIIQNKILDIITFFQKNQNIE--------------------------QIQLYLKNN 607

Query: 447  MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
              L+  Q + IL ++L +L  +   D  ++ N +  +IK   +I+++   +  +I QEL+
Sbjct: 608  FKLNPEQIKYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELI 667

Query: 507  SVKDEL--------------DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVP 552
             +K++                  + + I         ++  + +      ++   +    
Sbjct: 668  YIKNKYGIHNLNKQCIIPSTPKYKYSYINSEYHPNFSKNKQIIDTYNTVSTNDNNINHSN 727

Query: 553  LSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
             +              VV  +      +    ++       +      +    +      
Sbjct: 728  YTHDLPNTDNVTKDKNVVETNVHKNIHISSDISNNIKNSDKNSSLTKNQDSDNMMPYRNT 787

Query: 613  ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
                   N+  +   + +  ++ +            +    +  ++ + +   ++ N   
Sbjct: 788  YIDSLDNNMKDIYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSNVKYILKENEEK 847

Query: 673  KIA----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
                   +K +   +    E        L             +        ++  V  ++
Sbjct: 848  LNENNKRLKFNDLQKGNEQEKYKDNEQKLNNDIGHNINIQNNNNDNNNNNNDNNNVLLLN 907

Query: 729  LAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
              +     I  +I++           Y K        +   + +      +  +  + + 
Sbjct: 908  EEEYNSYKIKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKNI 967

Query: 788  ERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV 847
                + +  +++++  SE G  K  ++  F    R  KGI+    +K N     +     
Sbjct: 968  TGITKFQENKKYLIVCSENGKMKVINNDVF--LKRKKKGIKLFK-NKKN-----IYFSYC 1019

Query: 848  NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N ND  I+ +  G +I+ P++  +I+ + + G    S AK+++VV +
Sbjct: 1020 NFNDNCIVGTKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDL 1066



 Score = 89.9 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 74/574 (12%), Positives = 191/574 (33%), Gaps = 76/574 (13%)

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            ++  +  K  +  K+ +L+  K I  I+       +      I        ++I+ +L  
Sbjct: 609  KLNPEQIKYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEIINNVQNIKNLIIQELIY 668

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
              +   + ++N   +    P+        +    F +   +  T   ++   +       
Sbjct: 669  IKNKYGIHNLNKQCIIPSTPKYKYSYINSEYHPNFSKNKQIIDTYNTVSTNDNNI----- 723

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
                     ++      + +       + +    +SDI + I   D +S    +  +  +
Sbjct: 724  --NHSNYTHDLPNTDNVTKDKNVVETNVHKNIHISSDISNNIKNSDKNSSLTKNQDSDNM 781

Query: 450  SEVQTRAI--LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII---KQE 504
               +   I  L+  +  +       I         +IK    + +  + ++ +       
Sbjct: 782  MPYRNTYIDSLDNNMKDIYNNDEVLILITYGGYIKKIKINEKLKNHSNNIIKLSNVKYIL 841

Query: 505  LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
              + +   +  +R +  +     E E     E      + +G+   +  +          
Sbjct: 842  KENEEKLNENNKRLKFNDLQKGNEQEKYKDNEQ--KLNNDIGHNINIQNNNNDNNNNNND 899

Query: 565  GRSGVVMRDEDFV----TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              + +++ +E++         +V     +L   +    +   V+ L + S  ++G  +  
Sbjct: 900  NNNVLLLNEEEYNSYKIKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQ 959

Query: 621  ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            I+  ++     T           N  Y++  +++G ++      F++  + G   +KL  
Sbjct: 960  IIHSSKNITGITKF-------QENKKYLIVCSENGKMKVINNDVFLKRKKKG---IKLFK 1009

Query: 681  RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
              + +    C   ++ ++ TK G  ++FP+S+ +  + +NS+G + ISLAK D+V+ +  
Sbjct: 1010 NKKNIYFSYCNFNDNCIVGTKNGYIIQFPLSSFK-ISKKNSLGNKCISLAKNDKVVDLLS 1068

Query: 741  VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              + + +                                                    I
Sbjct: 1069 YENNEKNLKNYK-----------------------------------------------I 1081

Query: 801  LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
            + V++ GFGK  +  + +I  + GKG R     K
Sbjct: 1082 IFVTKNGFGKMINLNELKIQKKKGKGHRIMKFKK 1115



 Score = 44.4 bits (103), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 804  SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ------IILVS 857
            ++ G+  +     F+IS ++  G +   ++   +   +V +    +N++      II V+
Sbjct: 1029 TKNGYIIQFPLSSFKISKKNSLGNKCISLA---KNDKVVDLLSYENNEKNLKNYKIIFVT 1085

Query: 858  DKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
              G    + +NE++I  +  KG  I    K
Sbjct: 1086 KNGFGKMINLNELKIQKKKGKGHRIMKFKK 1115


>gi|257362193|gb|ACV53184.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  385 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|119444315|gb|ABL75400.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/249 (59%), Positives = 197/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GR SI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRSSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G ++V 
Sbjct: 241 DRTGIKIVF 249


>gi|237841329|ref|XP_002369962.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
 gi|211967626|gb|EEB02822.1| DNA gyrase subunit A, putative [Toxoplasma gondii ME49]
          Length = 1278

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/549 (33%), Positives = 293/549 (53%), Gaps = 59/549 (10%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M Q+ +  +  + KCAR+ GEV+GK+HPHG+ A+YDAL R+AQ +  R  LIEG GNFGS
Sbjct: 1   MQQLHLHPSGSFRKCARVVGEVLGKFHPHGDQAVYDALVRLAQTFVARHPLIEGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           VDGDPPAA RYTECRL +     LL +L    V FRPN+D + +EPVV  A  P VL+ G
Sbjct: 61  VDGDPPAAMRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQG 120

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVGM+T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I 
Sbjct: 121 SSGIAVGMSTQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIP 180

Query: 239 NAYATGRGSIVIRGVSHIE------------------------------KTSGDREQIVV 268
            AY  GRG +++RG  H+E                                  +  ++V+
Sbjct: 181 GAYKEGRGRVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNIRNGRKNERRLVI 240

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PY VNK+ +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L 
Sbjct: 241 TELPYGVNKSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLL 300

Query: 329 RYTSLQSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           ++T+LQ    ++++AL    KP RF+L  +L +++AFR   + R       + + R+H+L
Sbjct: 301 KHTNLQVYIPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLL 360

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL  AV+ +D+VV+ +R S + + A+++L +                           +
Sbjct: 361 EGLLRAVSLMDDVVQTVRESLSADEAKQKLTE-------------------------PPL 395

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
             S  Q +A+L L L+RLT L R  +  E  +    + E   +L+    +  ++ +EL +
Sbjct: 396 GFSPAQAQALLRLTLSRLTRLERRQLEEEAKAQKNRLSELASLLAHDREIYELMVEELQA 455

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            K     PR+T+++   L    +     ED   T +            + ++R  G+ + 
Sbjct: 456 HKTRHKAPRKTKVL--GLRRAQQRARREEDARATTARNSQEAFAETDRHDSRRPDGREKE 513

Query: 568 GVVMRDEDF 576
              ++D+  
Sbjct: 514 ENPVKDDTE 522



 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 85/275 (30%), Gaps = 95/275 (34%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V     +   +    
Sbjct: 1009 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDKAKTESR 1068

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            K   +       ++                        +  E  +L V+  GFGKR    
Sbjct: 1069 KEGDSDETQSKNESSN----------------------EKAEPSLLIVTAAGFGKRIRVS 1106

Query: 816  DFRISNRSGKGIRATDVSKINEIGA----------------------------------- 840
              R+  R G G+R   + K  ++                                     
Sbjct: 1107 ALRMQRRRGVGVRVIRLVKRKKVAREGDDRGLSDETVGQESQGFPDEEPDSEERADPRSV 1166

Query: 841  ----------------LVAVFPVNDND--------------QIILVSDKGTLIRVPVNEI 870
                            +VAV  +  +D              +++ V+  G L+R     I
Sbjct: 1167 SQEKDPQSPETEGDNYVVAVLALPASDLPNRPKKSKGSDNAELLSVTQNGFLLRQSCRSI 1226

Query: 871  R-IASRATKGVVIFST-------AKDERVVSVERI 897
                 R  +GV +          +  + +V+ + +
Sbjct: 1227 PMPRGRLARGVSLQRLPATGKSRSSTDLIVAADIV 1261



 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 94/310 (30%), Gaps = 58/310 (18%)

Query: 644  NNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQEND------ 695
               ++V  T  G + + KL   +        K  + L   D I +     +E +      
Sbjct: 847  KAKFLVVVTDQGRIAKIKLKRILGRRCETKVKKLLSLVQGDSIRAAALLEEEVEPLARGR 906

Query: 696  ILLTTKLGQCVRFPISAIRVFAG-RNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            +    K    +R   S        R +         K D+          + + ++    
Sbjct: 907  VSGAGKEINHLRGNGSECNATDEERGAR--------KKDREEEDEETTEKEEEEEDEEEE 958

Query: 755  MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE-----QFILTVSEKGFG 809
             +    +      +         D         ER      ++       I+ V+ +G G
Sbjct: 959  EEEEEEEEEEEEEEAGSRLVEDEDDVGGEGAEGERTDLKSEEKRDTNSPSIVIVTRQGMG 1018

Query: 810  KRTSSYDFRISNR-SGKGIRATDVSKINEIGALVAVFP-VNDN------------DQ--- 852
             R  +   R S     +G+RA  +   + + ++  V P V ++            D+   
Sbjct: 1019 LRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDKAKTESRKEGDSDETQS 1078

Query: 853  ------------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                        +++V+  G   R+ V+ +R+  R   GV +    K ++V         
Sbjct: 1079 KNESSNEKAEPSLLIVTAAGFGKRIRVSALRMQRRRGVGVRVIRLVKRKKVA-------R 1131

Query: 901  EIVDEAESTE 910
            E  D   S E
Sbjct: 1132 EGDDRGLSDE 1141


>gi|257362209|gb|ACV53189.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257472208|gb|ACV53945.1| gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 259

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/259 (59%), Positives = 207/259 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  ++   K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD 
Sbjct: 1   MTSDQPNKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 120

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +G
Sbjct: 121 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESG 180

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           RGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 181 RGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESD 240

Query: 305 RQGYRVVIELKRGASADVI 323
           R G R+VIE++R A+A+VI
Sbjct: 241 RTGMRIVIEIRRDANANVI 259


>gi|31745485|gb|AAP55216.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  384 bits (986), Expect = e-104,   Method: Composition-based stats.
 Identities = 109/177 (61%), Positives = 142/177 (80%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 177


>gi|257362178|gb|ACV53179.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|119444321|gb|ABL75403.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 250

 Score =  384 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 153/249 (61%), Positives = 198/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKAYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITISELMEFIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + I++TS  +E+IVVTEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIDQTSSGKERIVVTEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G R+VI
Sbjct: 241 DRTGMRIVI 249


>gi|257362184|gb|ACV53181.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362196|gb|ACV53185.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|119444325|gb|ABL75405.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 250

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 151/249 (60%), Positives = 199/249 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD
Sbjct: 1   GMTSDKPYEKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K +  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIA 120

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ AY +
Sbjct: 121 VGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYES 180

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGIPDLRDES 240

Query: 304 DRQGYRVVI 312
           DR G R+V+
Sbjct: 241 DRTGMRIVV 249


>gi|70671793|gb|AAZ06259.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671795|gb|AAZ06260.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|70671797|gb|AAZ06261.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 245

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/245 (60%), Positives = 193/245 (78%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G+  +K Y K ARI GEV+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSV
Sbjct: 1   NDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSV 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD  AA RYTE R+ K A  +L D+ KDT+D++ NYDGS +EPVV+ +R+PN+LVNG  
Sbjct: 61  DGDSAAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAA 120

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGE++DG +AV +N DI +  LME I GPDFPT   ILGR+GI+ A
Sbjct: 121 GIAVGMATNIPPHQLGEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKA 180

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 181 YESGRGSITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLR 240

Query: 301 DESDR 305
           DESDR
Sbjct: 241 DESDR 245


>gi|295092033|emb|CBK78140.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 257

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 115/219 (52%), Positives = 155/219 (70%), Gaps = 2/219 (0%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
           + I     ++EMQ SY+ Y+++VI  RAIPD RDGLKPV RR+L+ M ++ +  +K + K
Sbjct: 3   EKIIKTEYSEEMQKSYMNYSMSVITARAIPDARDGLKPVQRRVLYDMSELHLGHDKPHRK 62

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+ MGKYHPHG+++IY+ L  M+Q +   + L+ G GNFGS++GD  AA RYTE 
Sbjct: 63  SARIVGDTMGKYHPHGDSSIYETLVVMSQVFKKGMPLVNGHGNFGSIEGDGAAAMRYTEA 122

Query: 134 RLQKAAHFL-LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           RL+K A  + L DL K TV+F PNYD + +EP VL  R PN+L+NG  GIAVGM+T+IP 
Sbjct: 123 RLEKFAEEVYLKDLDK-TVNFVPNYDETEKEPEVLPVRVPNLLINGAEGIAVGMSTSIPP 181

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           HNLGEVVD   A IDNP++  + L+  + GPDFPTG +I
Sbjct: 182 HNLGEVVDTVQAFIDNPELRTEELLGHLHGPDFPTGGII 220


>gi|257362199|gb|ACV53186.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 148/192 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|257362190|gb|ACV53183.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  382 bits (982), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+ KYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVISKYHPHGDVAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|265679096|gb|ACY76267.1| DNA gyrase A [Mycobacterium chelonae]
          Length = 183

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 105/183 (57%), Positives = 133/183 (72%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+++IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFSPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 VDG 201
            + 
Sbjct: 181 AEA 183


>gi|265679090|gb|ACY76264.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679092|gb|ACY76265.1| DNA gyrase A [Mycobacterium massiliense]
 gi|265679094|gb|ACY76266.1| DNA gyrase A [Mycobacterium bolletii]
          Length = 183

 Score =  382 bits (981), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/183 (57%), Positives = 133/183 (72%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 VDG 201
            + 
Sbjct: 181 AEA 183


>gi|31745499|gb|AAP55223.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 177

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 109/177 (61%), Positives = 141/177 (79%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G
Sbjct: 1   NIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 61  DVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 120

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 HGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 177


>gi|257362203|gb|ACV53187.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|265679098|gb|ACY76268.1| DNA gyrase A [Mycobacterium immunogenum]
          Length = 181

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 106/181 (58%), Positives = 132/181 (72%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V I  EMQ SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR  
Sbjct: 1   VDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
            E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DP AA RYTE RL   
Sbjct: 61  AETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEARLTPL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L ++ ++TVDF PNYDG   EP VL +R+PN+L NG GGIAVGMATN+P HNL E+
Sbjct: 121 AMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPHNLREL 180

Query: 199 V 199
            
Sbjct: 181 A 181


>gi|116486983|emb|CAJ38778.1| DNA gyrase subunit A [Mesorhizobium sp. Cc3]
          Length = 212

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/212 (69%), Positives = 172/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQDTYDASDTEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +  +AVIDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNAAIAVIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|257362187|gb|ACV53182.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae]
          Length = 194

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/192 (61%), Positives = 147/192 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K IT VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +N+ 
Sbjct: 3   ELAKDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+ KYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVISKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+QK    LL DL K+TVD+ PNYDG    P VL  + P +LVNG  GIAVGMATNI
Sbjct: 123 TEVRMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNI 182

Query: 191 PTHNLGEVVDGC 202
           P HNL EV+DGC
Sbjct: 183 PPHNLNEVLDGC 194


>gi|116486985|emb|CAJ38780.1| DNA gyrase subunit A [Mesorhizobium tianshanense]
          Length = 212

 Score =  379 bits (974), Expect = e-102,   Method: Composition-based stats.
 Identities = 147/212 (69%), Positives = 172/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ K+TVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKETVDFQDTYDASGSEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIALIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE    D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGRVNIEARGND 212


>gi|221316455|ref|ZP_03598260.1| DNA gyrase/topoisomerase IV, subunit A [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 664

 Score =  379 bits (972), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/714 (25%), Positives = 320/714 (44%), Gaps = 73/714 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+ +I   ++N+ + Y+  ++L RA+PDLRDGLKPVHRRIL+ M    ++   K+ K A 
Sbjct: 4   TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG---SVDGDPPAAERYTEC 133
           ++G+VM K HPHG  + Y ++  M Q     + ++EG+GNFG   S D   PAA+RY+E 
Sbjct: 61  VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRD-LMPAADRYSEV 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + +  ++ +  K+ VDF  NYDG+ + P VL  ++P++L     GI VG +++IP+ 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRG 252
           NL E+ +  V  I+  +  +         PDF TG +I+    + +     GRG++ IRG
Sbjct: 177 NLKELTEAIVKYIETGEKTVLV-------PDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K       I +TEIPY   + A++EKI EL +  ++ ++ D++D +  +G  + I
Sbjct: 230 KAEIVKNE-----IHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
             +R    +V+L +LY++T LQS FS NM  L    P+   +   +  ++ +R   + R 
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRG 344

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + +     + H+L GL   + ++DE + IIR S                         
Sbjct: 345 LSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSS------------------------ 380

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           +   Q + +  ++L  +          +++     I+    I+ 
Sbjct: 381 ---QDQIEPNLQKHFGIDFEQAKEVANMKLRNINREYIIKKIEDIDKFEKTIENYKMIVK 437

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKR 550
           S+ ++  II + L   K++    RRT+IVE          + +    + + ++  GY  +
Sbjct: 438 SQDKINQIIIKGLNETKEKYGKERRTKIVELTEVKPVRLVEEVPNYAVTIYLTKEGYCYK 497

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                        KG     ++  D V  +F       +L F S    +K ++  +    
Sbjct: 498 F------------KGNQEPNLKPGDEVLKVFETENKAEILIFGSDRVCHKVELKDIDETR 545

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A G  L N++      R   I           + +++ A  +  + +  L  F     
Sbjct: 546 ANALGTYLPNMI------RDKNITIVSYSILDSTHKFIIAAYSNNRIAKINLEAFQGNRT 599

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             K +  L     +L + T   +  + L T   + +        +  GRN+ GV
Sbjct: 600 ILKNSYCLKQD--LLDMITLEDDVSLNLLTDKSK-LTVDTKNFNLTNGRNATGV 650


>gi|116486981|emb|CAJ38776.1| DNA gyrase subunit A [Mesorhizobium sp. Ca004]
          Length = 212

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/212 (69%), Positives = 173/212 (81%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRIL+   + G  WN+KYVK AR   +VMGKYHPHG+A+IYDAL RMAQDWSLR+ L
Sbjct: 1   PVHRRILYAAHESGYHWNRKYVKSARPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPL 60

Query: 111 IEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           I+GQGNFGS+DGDPPAA RYTE RL K AH LL+D+ KDTVDF+  YD S  EP VL AR
Sbjct: 61  IDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLEDIDKDTVDFQETYDASDTEPKVLPAR 120

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +PN+LVNG GGIAVGMATNIP HNLGEV +G +A+IDNP IDL ALMEII GPDFPTG +
Sbjct: 121 FPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGI 180

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +LGR+GI +AY+TGRGSIV+RG  +IE+   D
Sbjct: 181 VLGRSGIYSAYSTGRGSIVMRGKVNIEQRGND 212


>gi|121822772|gb|ABM65607.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/188 (61%), Positives = 150/188 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEI 219
            ++ LME 
Sbjct: 181 SIEGLMEH 188


>gi|90969028|gb|ABE02584.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  378 bits (971), Expect = e-102,   Method: Composition-based stats.
 Identities = 117/197 (59%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           DN D  L+ +M+ I+GP
Sbjct: 181 DNKDASLEEIMQFIKGP 197


>gi|313621658|gb|EFR92451.1| DNA gyrase/topoisomerase IV, A subunit [Listeria innocua FSL
           S4-378]
          Length = 192

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/190 (60%), Positives = 148/190 (77%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGSVDGD  AA R
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K +  LL D+ KDT+D+  NYDGS +EPV+L AR+PN+LVNG  GIAVGMATN
Sbjct: 123 YTEARMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATN 182

Query: 190 IPTHNLGEVV 199
           IPTH+LGEV+
Sbjct: 183 IPTHHLGEVI 192


>gi|323651011|ref|YP_004243654.1| ATP-hydrolyzing DNA topoisomerase subunit A [Bacillus subtilis
           subsp. natto]
 gi|323461651|dbj|BAJ77067.1| subunit A of ATP-hydrolyzing DNA topoisomerase [Bacillus subtilis
           subsp. natto]
          Length = 664

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 178/714 (24%), Positives = 319/714 (44%), Gaps = 73/714 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
           T+ +I   ++N+ + Y+  ++L RA+PDLRDGLKPVHRRIL+ M    ++   K+ K A 
Sbjct: 4   TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG---SVDGDPPAAERYTEC 133
           ++G+VM K HPHG  + Y ++  M Q     + ++EG+GNFG   S D   PAA+RY+E 
Sbjct: 61  VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRD-LMPAADRYSEV 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L + +  ++ +  K+ VDF  NYDG+ + P VL  ++P++L     GI VG +++IP+ 
Sbjct: 117 KLSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSF 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI-KNAYATGRGSIVIRG 252
           NL E+ +  V  I+  +  +         PDF TG +I+    + +     GRG++ IRG
Sbjct: 177 NLKELTEAIVKYIETGEKTVLV-------PDFATGGLIVKEDNVFRQLNEEGRGTVKIRG 229

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + I K       I +TEIPY   + A++EKI EL +  ++ ++ D++D +  +G  + I
Sbjct: 230 KAEIVKNE-----IHITEIPYSTTRQAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI 284

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
             +R    +V+L +LY++T LQS FS NM  L    P+   +   +  ++ +R   + R 
Sbjct: 285 TARRNTDMNVLLEKLYKFTPLQSTFSANMNMLVDDLPKVLGVWQTIDKWLEWRTTCIKRG 344

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             + +     + H+L GL   + ++DE + IIR S                         
Sbjct: 345 LSHDIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSS------------------------ 380

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           +   Q + +  ++L  +          +++     I+    I+ 
Sbjct: 381 ---RDQIERNLQKHFGIDFEQAKEVANMKLRNINREYIIKKIEDIDKFEKTIENYKMIVK 437

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE--DCIVREDMVVTVSHLGYVKR 550
           S+ ++  II + L   K++    RRT+I E          + +    + + ++  GY  +
Sbjct: 438 SQDKINQIIIKGLNETKEKYGKERRTKIAELTEVKPVRLVEEVPNYAVTIYLTKEGYCYK 497

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
                        KG     ++  D V  +F       +L F S    +K ++  +    
Sbjct: 498 F------------KGNQEPNLKPGDEVLKVFETENKAEILIFGSDRVCHKVELKDIDETR 545

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             A G  L N++      R   I           + +++ A  +  + +  L  F     
Sbjct: 546 ANALGTYLPNMI------RDKNITIVSYSILDSTHKFIIAAYSNNRIAKINLEAFQGNRT 599

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             K +  L     +L + T   +  + L T   + +        +  GRN+ GV
Sbjct: 600 ILKNSYCLKQD--LLDMITLEDDVSLNLLTDKSK-LTVDTKNFNLTNGRNATGV 650


>gi|153840091|ref|ZP_01992758.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746311|gb|EDM57376.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 286

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 109/226 (48%), Positives = 160/226 (70%), Gaps = 3/226 (1%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S E    G+  + +    +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  
Sbjct: 2   STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   
Sbjct: 62  SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSF 120

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE +L K A  LL +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVG
Sbjct: 121 AAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVG 180

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
           MAT+IP HN+ EV D  + +IDNP  +L  +M+ ++GPD+PT A I
Sbjct: 181 MATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEI 226


>gi|90969022|gb|ABE02581.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D  L+ +M+ I+GP
Sbjct: 181 DSKDASLEEIMQFIKGP 197


>gi|90969014|gb|ABE02577.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 150/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D  L+ +M+ I+GP
Sbjct: 181 DSKDTSLEEIMQFIKGP 197


>gi|312600999|gb|ADQ90254.1| Topoisomerase IV subunit A [Mycoplasma hyopneumoniae 168]
          Length = 749

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 177/718 (24%), Positives = 325/718 (45%), Gaps = 44/718 (6%)

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           +   L+E  GN GS+D DPPAA RYTE RL + +  LL+ + K+ V F PN+D S +EP 
Sbjct: 1   MNSPLVEMHGNKGSIDDDPPAAMRYTEVRLAEISEHLLELISKNVVSFYPNFDDSEKEPT 60

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
           +L A +PN+L+NG  GIA G AT IP HNLGEV+D  + +I NP I ++ +  II GPDF
Sbjct: 61  ILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIKNPGITIEEISTIILGPDF 120

Query: 226 PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
           PTG ++ G++GI +A+ TG+G I I     I +    +  I +T IP+ ++K++++E+I 
Sbjct: 121 PTGGIVYGKSGIFDAFKTGKGKIKISSDYKIFE-KNGQNVIEITSIPFGISKSSLIEEID 179

Query: 286 ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN 345
           ++  + +I  I ++ D+SD+ G  ++IEL++  + D+I+N L + T LQ  +S N VA+ 
Sbjct: 180 DIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDLIINYLLQKTHLQIHYSYNSVAIC 239

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
              P+  ++  ++  ++    ++ +    + L K + R  ++ G        DEV+++IR
Sbjct: 240 DNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIR 299

Query: 406 FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
            S N                 + DLI                  S+ Q  AI  +RL RL
Sbjct: 300 ASDN------------SKVGVVSDLIKF-------------FNFSQTQAEAIASMRLYRL 334

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEG 523
           + + +     E  +L   I     ++ ++      +   L   K     PR+T     + 
Sbjct: 335 SKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDI 394

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
            + +  ++ +  E     ++  G  K++ +     +           + + DF     I+
Sbjct: 395 KIKINKDELVKDEFFYFWITKSGLYKKLDI-----KNSLPDEIEKTQLPNGDFFIFQGII 449

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
           +     +F ++ G +    V ++P  + +     L   L +   ++I   +     +S  
Sbjct: 450 NQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQI---LSVFFADSFE 506

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM-KLDSRDEILSVETCTQENDILLTTKL 702
           ++ +++F +K    +R  L   ++I +     + +    DE++SV    +  +I+L T  
Sbjct: 507 SSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISVFLEEKLKNIVLITTQ 566

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
            + ++  IS I     RNS G++     K + + +   +  +++                
Sbjct: 567 NRALKMSISEI-PIYTRNSTGIKIFRHRKNEFISASQTIESSESLAVIDFNSQFEKINTE 625

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG-KRTSSYDFRI 819
            L  G+                  +      +      L + E G G K  S  DFR 
Sbjct: 626 NLFFGNKILTPKNFKTKLDFSLSPKSIIIYNEN-----LQIFEFGEGLKIFSLNDFRK 678



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 7/176 (3%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS---SVEGNI 785
           L  GD  I   I+                + A  ++   + +   +    +        I
Sbjct: 437 LPNGDFFIFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQI 496

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 +     QF++ +S+  F KR +        +     +  ++ +  E   L++VF
Sbjct: 497 LSVFFADSFESSQFLIFISKFSFAKRMNLDQLMKIKQK----KLQNIFRFKEGDELISVF 552

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
                  I+L++ +   +++ ++EI I +R + G+ IF   K+E + + + I  SE
Sbjct: 553 LEEKLKNIVLITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIESSE 608


>gi|121822733|gb|ABM65605.1| DNA gyrase A [Shigella flexneri 2a]
          Length = 188

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/188 (61%), Positives = 150/188 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 61  AVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEI 219
            ++ LME 
Sbjct: 181 SIEGLMEH 188


>gi|90969026|gb|ABE02583.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  376 bits (965), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 151/197 (76%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YH
Sbjct: 1   SSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+
Sbjct: 61  PHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDI 120

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++
Sbjct: 121 DKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLL 180

Query: 207 DNPDIDLDALMEIIRGP 223
           D+ D+ L+ +M+ I+GP
Sbjct: 181 DSKDVSLEEIMQFIKGP 197


>gi|90969018|gb|ABE02579.1| gyrase A [Campylobacter jejuni]
 gi|90969020|gb|ABE02580.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 149/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D  L+ +M+ I+GP
Sbjct: 182 SKDASLEEIMQFIKGP 197


>gi|90969016|gb|ABE02578.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 149/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D  L+ +M+ I+GP
Sbjct: 182 SKDTSLEEIMQFIKGP 197


>gi|90969024|gb|ABE02582.1| gyrase A [Campylobacter jejuni]
          Length = 197

 Score =  376 bits (964), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/196 (59%), Positives = 150/196 (76%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDLDALMEIIRGP 223
           + D+ L+ +M+ I+GP
Sbjct: 182 SKDVSLEEIMQFIKGP 197


>gi|156103257|ref|XP_001617321.1| DNA GyrAse a-subunit [Plasmodium vivax SaI-1]
 gi|148806195|gb|EDL47594.1| DNA GyrAse a-subunit, putative [Plasmodium vivax]
          Length = 1263

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 197/958 (20%), Positives = 379/958 (39%), Gaps = 97/958 (10%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
             V I + +  ++L+YA  +IL R + D RDGLK V RRI++ M ++     K+ Y KCAR
Sbjct: 152  DVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKKCAR 211

Query: 77   ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
            I GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+    AA RYTE ++ 
Sbjct: 212  IVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVEY-NAAAMRYTEAKIS 270

Query: 137  KAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
               +  LLD++ ++ V++  N+DG+  EP V C++ P +L+NG  GIAV + +NIP HNL
Sbjct: 271  NFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHNL 330

Query: 196  GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAYATGRGSIVIRGVS 254
             +V++  ++ + NP I  D L  II+GPDF TG +I+     ++N Y TGRGSI IR   
Sbjct: 331  VDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSNV 390

Query: 255  HIEKTSGDRE----------------------QIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E T  D++                      ++V+  +P  V    ++E +  ++ EK+
Sbjct: 391  FLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEKK 450

Query: 293  IVD---IADLRDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVAL-N 345
                  +  +RDES+++  R+V+EL++    + I + L   ++YT +Q+ +  N V + +
Sbjct: 451  NEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIGH 510

Query: 346  GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                 +F+L   L+ +   R + +           +   H++    +    + E++  ++
Sbjct: 511  QNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIISFLQ 570

Query: 406  FSPNPETAR----RELMQRSWNASDIKDLI--DLIDDSSYTIGSDGTMYLSEVQTRAILE 459
             + N E  +    +      +    I  +    L++  +   G      L+ ++    L 
Sbjct: 571  KNQNIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHFGPHKEKILTRMRDNRDLI 630

Query: 460  LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK--QELLSVKDELDTP-- 515
              + R+  L  +++    N  G      L            I        +KD  D P  
Sbjct: 631  ADVDRIKRLIIEELAYIKNKYGTSSAGRLPTPQGVKYKYVYISPSAGGHPLKDHFDPPLP 690

Query: 516  ----------RRTRIVEGLLDMEDEDCIVREDMVVTVSHLG-------YVKRVPLSVYRA 558
                      +     +   +         E+      H+G       +++   +     
Sbjct: 691  PQRDDPPAFAKNAGDTKEEKEKLRSGVDPDEERTWEEQHMGEQHIGEQHIEEQHIEEQHI 750

Query: 559  QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            + +  + +       E+   +   +              + ++ +    I          
Sbjct: 751  EEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEVDPPLPKG 810

Query: 619  INIL------------------SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
             N                     ++        +     +   N+  +V  T  G V++ 
Sbjct: 811  KNERGVHHTGGTQRGAKETDPPPVHYRHTYIDCVHADVKDVYNNDHVLVLITYGGYVKKI 870

Query: 661  KL-SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
            K+         +      +      +E   +      +        G       S+    
Sbjct: 871  KVAEKLKNHQNNTIKLSNVKYILKENEERRLNVGGAASGAASGEDSGGENGVATSSANPT 930

Query: 717  AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            +   +        A     +  +I+              K        +   + +     
Sbjct: 931  SANTAN-------AANCYKVKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTP 983

Query: 777  NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
             +  V  + S     + +  +++++  SE G  K  ++  F    +  KGIR       N
Sbjct: 984  INQVVHCSKSITGMAKFEESKKYLIVCSENGKMKIINNDVFLKKKK--KGIRLFK----N 1037

Query: 837  EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            +    +     N +D  I+ +  G +I+ P++  +I+ + + G    S  K+++VV +
Sbjct: 1038 KKD--IHFSYCNFSDNCIVGTASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDL 1093



 Score = 81.0 bits (198), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 115/384 (29%), Gaps = 78/384 (20%)

Query: 458  LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +   +  +       +         +IK    +   ++     IK   +    + +  RR
Sbjct: 844  VHADVKDVYNNDHVLVLITYGGYVKKIKVAEKL---KNHQNNTIKLSNVKYILKENEERR 900

Query: 518  TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
              +          +    E+ V T S                       +     +   V
Sbjct: 901  LNVGGAASGAASGEDSGGENGVATSSAN-----------------PTSANTANAANCYKV 943

Query: 578  TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
                +      +L   S    Y   V  L   S  ++G  +  ++  ++           
Sbjct: 944  KKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSKSITGMAKF--- 1000

Query: 638  EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
                  +  Y++  +++G ++      F++  + G   ++L    + +    C   ++ +
Sbjct: 1001 ----EESKKYLIVCSENGKMKIINNDVFLKKKKKG---IRLFKNKKDIHFSYCNFSDNCI 1053

Query: 698  LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            + T  G  ++FP+S  +  + +NS+G + ISL K D+V+ +    + +    +       
Sbjct: 1054 VGTASGHIIQFPLSNFK-ISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQ----- 1107

Query: 758  MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                      I+ +S+ G GK  +  + 
Sbjct: 1108 ------------------------------------------IIFLSKGGHGKMVNLGEL 1125

Query: 818  RISNRSGKGIRATDVSKINEIGAL 841
            ++  R GKG +     +      +
Sbjct: 1126 KVQKRRGKGYKIMKFKRAKRGAPI 1149



 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 82/671 (12%), Positives = 192/671 (28%), Gaps = 62/671 (9%)

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
             ++   H        +    T+   +       E   + +R    +   +L+ E      
Sbjct: 496  QMQTTYHCNFVCIGHQN-SYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDL 554

Query: 309  RVVIE---LKRGASADVILNQLYRYTSLQSLFSVNMVALNG--YKPERFTLIGILKAFVA 363
             ++I+   L+  +      N        +  F +N   +        +  +      F  
Sbjct: 555  YILIQKKILEIISFLQKNQNIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHFGP 614

Query: 364  FREEVVVR-RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +E+++ R R    L    DR   L+   +A              P P+  + + +    
Sbjct: 615  HKEKILTRMRDNRDLIADVDRIKRLIIEELAYIKNKYGTSSAGRLPTPQGVKYKYV-YIS 673

Query: 423  NASDIKDLIDLIDDSSYTIGSD-------------GTMYLS---EVQTRAILELRLARLT 466
             ++    L D  D        D                 L    +       E +     
Sbjct: 674  PSAGGHPLKDHFDPPLPPQRDDPPAFAKNAGDTKEEKEKLRSGVDPDEERTWEEQHMGEQ 733

Query: 467  GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
             +G   I  +        ++ ++      + +     E   ++++    +          
Sbjct: 734  HIGEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQHIEEQ 793

Query: 527  MEDEDCIVREDMVVT-------VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
              +E  I   D  +        V H G  +R       A+              +    D
Sbjct: 794  HIEEQHIEEVDPPLPKGKNERGVHHTGGTQRG------AKETDPPPVHYRHTYIDCVHAD 847

Query: 580  LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
            +  V  +  VL   + G   K+      + + Q     L N+  + +      +      
Sbjct: 848  VKDVYNNDHVLVLITYGGYVKKIKVAEKLKNHQNNTIKLSNVKYILKENEERRLNVGGAA 907

Query: 640  ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
              + +          G       S     + +   A       + +    C  ++ +LLT
Sbjct: 908  SGAASGE------DSGGENGVATSSANPTSANTANAANCYKVKKSI---LCRNKDRLLLT 958

Query: 700  TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
                +     +  ++  +  +S G   I+     QV+  +  +   A ++E   Y+   S
Sbjct: 959  DSQNKAYVLDVCDLQT-SSYDSKG-TPIN-----QVVHCSKSITGMAKFEESKKYLIVCS 1011

Query: 760  AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
               ++   + +     K          ++            +  +  G   +    +F+I
Sbjct: 1012 ENGKMKIINNDVFLKKKKKGIRLFKNKKDIHFSYCNFSDNCIVGTASGHIIQFPLSNFKI 1071

Query: 820  SNRSGKGIRATDVSKINEIGALVAVFPVNDND------QIILVSDKGTLIRVPVNEIRIA 873
            S ++  G +   +    +   +V +    +++      QII +S  G    V + E+++ 
Sbjct: 1072 SKKNSLGNKCISLG---KNDKVVDLLTYENDEKSVKKFQIIFLSKGGHGKMVNLGELKVQ 1128

Query: 874  SRATKGVVIFS 884
             R  KG  I  
Sbjct: 1129 KRRGKGYKIMK 1139


>gi|237846379|gb|ACR22827.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 202

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/198 (57%), Positives = 148/198 (74%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I + ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G
Sbjct: 5   DIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +
Sbjct: 65  AVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLS 124

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
           H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++
Sbjct: 125 HELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELI 184

Query: 200 DGCVAVIDNPDIDLDALM 217
           DG + ++D+ D  L+ +M
Sbjct: 185 DGLLYLLDSKDASLEEIM 202


>gi|46326990|gb|AAS88433.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 197

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 114/196 (58%), Positives = 148/196 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 2   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 181

Query: 205 VIDNPDIDLDALMEII 220
           ++D+ D  L+ +M+ I
Sbjct: 182 LLDSKDASLEEIMQFI 197


>gi|82793752|ref|XP_728165.1| DNA gyrase subunit A [Plasmodium yoelii yoelii str. 17XNL]
 gi|23484380|gb|EAA19730.1| DNA gyrase subunit a-related [Plasmodium yoelii yoelii]
          Length = 968

 Score =  372 bits (955), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/739 (24%), Positives = 331/739 (44%), Gaps = 82/739 (11%)

Query: 9   DEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +   +K I      V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++ 
Sbjct: 176 ENPNKKLIKGEYYDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEIN 235

Query: 65  VEWN-KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
              + K Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      +LI G GNFGSV+  
Sbjct: 236 KGSDRKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGYGNFGSVEY- 294

Query: 124 PPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
             AA RYTE R+    +  LLD++  + VD+  N+DG+ +EP VLC++ P +L+NG  GI
Sbjct: 295 NAAAMRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPLLLINGCSGI 354

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG-RTGIKNAY 241
           AV + TNIP+HNL +V++  +  + N  I  D L  +I+GPDF TG +I+  +  ++N Y
Sbjct: 355 AVSILTNIPSHNLVDVINASINFLINEKITNDELFNLIKGPDFSTGGIIITKKDALRNIY 414

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQI----------------------VVTEIPYQVNKAA 279
            TG+GSIVIR     E    ++  I                      ++  +P  V    
Sbjct: 415 NTGKGSIVIRSNVFYEYVRNNKTYIHHINELSNLENLECDNKSSKKLIIKNLPPNVKPNE 474

Query: 280 MLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSL 333
           ++E I  ++ E++      ++ +RDES++   R+V+EL++ +  + I N    L++YTS+
Sbjct: 475 LIENIVTVLNERKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTSM 534

Query: 334 QSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +  +  N V +       +F+L   L+ +   R + + +  K   N  +   +++     
Sbjct: 535 EINYHCNFVCIGYENSYTQFSLKPFLQLWCENRIKFIKKNYKIKNNNLQKELNIIDLYLT 594

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
               + +++  +  + N E  +                                  L+E 
Sbjct: 595 IQKKILDIISFLHKNQNIEQIQN--------------------------YLKSNFKLNED 628

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q + IL +++ +L  +   +   + N++  +IK    I+ +   +  II  EL+ +K++ 
Sbjct: 629 QIKYILSMKIQKLINIKNINFDIQKNNIIKKIKSNQYIIDNVQEIKQIIINELIHIKNKY 688

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR----AQRRGGKGRSG 568
              ++   +     ++ +   +  D+ +  +   Y +    +       A   GGKG   
Sbjct: 689 SLSKK---ILPQPQLKYKYSYINGDLNLLNTSQKYDEDNTKNGVNKFSIAPNMGGKGGGQ 745

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFF--SSLGFVYKEKVWRLPIGSPQARGKALINIL-SLN 625
                      +       +       +   V K     +  G+     K   N + + N
Sbjct: 746 TDDTTNGQNNKILESGEKGNKNEVEKGNKNEVEKGNKNEVEKGNKNEVEKGNKNEVENEN 805

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK-------L 678
                   +     +   N+  ++  T  G +++ K++   ++  +    MK       L
Sbjct: 806 YRNTYIDSLDTTFKDIYNNDDVLILITYGGYIKKIKIN--DKLKNNVNNIMKLSNAKYIL 863

Query: 679 DSRDEILSVETCTQENDIL 697
              +E  +V+    E  I 
Sbjct: 864 KEIEETKNVKKTNNEKKIN 882


>gi|218134383|ref|ZP_03463187.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989768|gb|EEC55779.1| hypothetical protein BACPEC_02277 [Bacteroides pectinophilus ATCC
           43243]
          Length = 511

 Score =  372 bits (954), Expect = e-100,   Method: Composition-based stats.
 Identities = 187/574 (32%), Positives = 299/574 (52%), Gaps = 87/574 (15%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +Q  F V M+AL   +P+   L+ +L  ++  ++EV+ RRT+Y LNKA +RAH+L GL I
Sbjct: 1   MQDTFGVIMLALVDNQPKVLNLLDMLIYYLRHQKEVITRRTQYDLNKAEERAHILQGLMI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+D V+ IIR S N +TA+  LM+                             LS+V
Sbjct: 61  ALDNIDRVISIIRGSENVQTAKESLMKE--------------------------FELSDV 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q +AI+++RL  LTGL R  +  E   L  +I+E   IL+   +LLG+I+ E+L + D+ 
Sbjct: 95  QAQAIVDMRLRALTGLERAKLEAEYAELIKKIEEYKAILADEKKLLGVIRTEILVIADKY 154

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
              RRT I     D+  ED I  E +V+  ++LGY+KR+ L  ++AQ RGGKG  G+   
Sbjct: 155 GDDRRTSIGFDEFDISMEDIIPDEPVVIARTNLGYIKRMTLDNFKAQHRGGKGIRGMQTI 214

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+D++ DLF+ ++H  ++FF++ G  Y+ K + +P     ARG A+IN+L L  GE IT 
Sbjct: 215 DQDYIEDLFMTTSHHYLMFFTNTGRAYRMKAYEIPEAGRTARGTAVINLLQLQPGETITA 274

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           ++P  E     +N Y+  AT++G V++ K++++  I ++G  A+ +   DE++ V+    
Sbjct: 275 VIPIREYN---DNNYLFMATRNGIVKKTKVTEYSNIRKNGIQAITIRDNDELIEVKLTDD 331

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERI 752
             DI+L TKLG C+RF  + +R   GR S+GV G+ L   DQV+ M I    D+      
Sbjct: 332 TKDIMLVTKLGMCIRFKETDVRP-TGRTSMGVIGMDLMDEDQVVGMQIDSQGDS------ 384

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
                                                          +L VSEKG GKRT
Sbjct: 385 -----------------------------------------------LLIVSEKGLGKRT 397

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRI 872
              +F   +R GKG++   +++  + G +V V  V+D  +I+L++ +G +IR+   +I I
Sbjct: 398 LIEEFTTQHRGGKGVKCYKINE--KTGNVVGVKAVDDTREIMLITTEGIIIRIKAQDISI 455

Query: 873 ASRATKGVVIFSTAKDERVVSVERI--RESEIVD 904
             R T GV + +      V SV ++  +  +  D
Sbjct: 456 LGRITSGVKLINLEDGVTVASVSKVRRKPQDGDD 489


>gi|121822754|gb|ABM65606.1| DNA gyrase A [Shigella flexneri]
          Length = 188

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 114/188 (60%), Positives = 149/188 (79%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+ D + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ +L K+TV
Sbjct: 61  AVDDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMAELEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC+A ID+ DI
Sbjct: 121 DFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDI 180

Query: 212 DLDALMEI 219
            ++ LME 
Sbjct: 181 SIEGLMEH 188


>gi|224039159|gb|ACN38390.1| DNA gyrase subunit A [Achromobacter denitrificans]
          Length = 163

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 104/163 (63%), Positives = 134/163 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPHGDQ 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           ++Y  + RMAQD+S+R +L++GQGNFGS+DGD  AA RYTE RL K AH LL D+ ++TV
Sbjct: 61  SVYGTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           DF PNYDGS QEP++L +R PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 DFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHN 163


>gi|308198937|dbj|BAJ22603.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 193

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/191 (59%), Positives = 145/191 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 205 VIDNPDIDLDA 215
           ++DN D  L+ 
Sbjct: 183 LLDNKDASLEE 193


>gi|308198939|dbj|BAJ22604.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 113/191 (59%), Positives = 145/191 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 205 VIDNPDIDLDA 215
           ++DN D  L+ 
Sbjct: 183 LLDNKDASLEE 193


>gi|118474051|ref|YP_884869.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
 gi|118175338|gb|ABK76234.1| DNA gyrase subunit A [Mycobacterium smegmatis str. MC2 155]
          Length = 713

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 205/786 (26%), Positives = 330/786 (41%), Gaps = 84/786 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT   +   E+    +   S  D   +  LT+A+  +  RAIP   DGLKP  RR+L+ M
Sbjct: 1   MT-ATLDVPEQNPDLVLDQSADDYWNHYQLTFALYSVSDRAIPSAYDGLKPGQRRLLYQM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
               +    K  K +++   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  +
Sbjct: 60  HDSKLLPGNKPQKSSKVCSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPRI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD PAA+RYTE RL      L  +L    V   P +DG + EP VL A++P +L NG  
Sbjct: 119 QGDIPAADRYTEMRLSAPGAALTAELNDHAVPMVPTFDGEWVEPTVLPAQWPVLLCNGAV 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HN  EV+  C A++  P++  D L ++I GPD+ +GA ++G  G++  
Sbjct: 179 GIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLCKLIPGPDWGSGASVVGTAGLREY 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG   +RG   +E     +  I+ TE+P  V    + ++I  LV    +  +AD+ 
Sbjct: 239 ITTGRGHFTVRGTISVE----GKNCII-TELPPGVASNTVQDRIRALVESGEMSGVADMS 293

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           D +D R G R+V+  KRG +A+ I +QL   T L+S F+ ++VAL+  + P  +++  ++
Sbjct: 294 DLTDRRNGLRIVVTAKRGHNAEQIRDQLLALTPLESTFAASLVALDENRVPRWWSVRDLI 353

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF+  R+ VV+ R++Y L K   R H++ GL     ++D  V +IR S   + AR+ L 
Sbjct: 354 MAFLQLRDSVVLHRSEYRLEKVTARRHLVAGLMKIHLDIDAAVAVIRGSETVDEARKGLQ 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            +   Q   +L L+L RLT L   +++ E  
Sbjct: 414 ER--------------------------FKIDAEQADYVLSLQLRRLTKLDVIELQAEAE 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL---DTPRRTRIVEGLLDMEDEDCIVR 535
            L  E  E  D++++      +I +EL+         +  RRT +      +   D    
Sbjct: 448 KLDAEFAELNDLVTNPESRRKVIDKELVETAKLFKGPEYDRRTVLDFDATPVSRGD---- 503

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
                     G  +R   + +R   RG    S   +        ++            S 
Sbjct: 504 --------EDGSRERKVNTAWRLDDRGVFSDSHGELLTSGLGWAVW------------SD 543

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +       LP           I  L                        ++   T+ G
Sbjct: 544 GRIKFTTGNGLPFKIRDIPVAPDITGL--------------VRSGVLPEGYHLALVTRRG 589

Query: 656 NVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET--CTQENDILLTTKLGQCVRFPI 710
            + R   +       +G     +      DE+++     C     IL   +    V   +
Sbjct: 590 KILRVDPASVNPQGVAGNGVAGVKLAADGDEVIAALPVSCANGEAILSIAEKSWKVT-EV 648

Query: 711 SAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           + I    GR   GV      KG D +++ +I           +       A  +    D 
Sbjct: 649 ADI-PVKGRGGAGVAFHPFVKGEDALLAASISKTGYVRGKRAVRPENRAKASIKGSGADV 707

Query: 770 EEITSL 775
               + 
Sbjct: 708 TPAPAE 713



 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-AKDERVVSV 894
           LV    + +   + LV+ +G ++RV    +     A  GV      A  + V++ 
Sbjct: 570 LVRSGVLPEGYHLALVTRRGKILRVDPASVNPQGVAGNGVAGVKLAADGDEVIAA 624


>gi|239737041|gb|ACS13100.1| GyrA [Pseudomonas putida]
          Length = 163

 Score =  369 bits (948), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 107/163 (65%), Positives = 131/163 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TV
Sbjct: 61  AVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           D+ PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 DWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHN 163


>gi|145629330|ref|ZP_01785129.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978833|gb|EDJ88556.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 589

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 254/609 (41%), Positives = 367/609 (60%), Gaps = 34/609 (5%)

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +A IDN +I +D LM+ I GPDFPT A+I GR GI+ AY TGRG + +R  + +E     
Sbjct: 1   MAYIDNNEITIDELMQHIPGPDFPTAALINGRKGIEEAYRTGRGKVYVRARATVETNEKG 60

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           REQI+V+E+PYQVNKA ++EKIAEL+REK+I  I+++ D S+++G R+ I++KR A  +V
Sbjct: 61  REQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAVGEV 120

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +LN LY  T +Q  F +NMVAL+  +P  F L  I+++FV  R EVV RR+ + L KAR+
Sbjct: 121 VLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIESFVLHRREVVTRRSIFELRKARE 180

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA-SDIKDLID---LIDDSS 438
           R H+L GLA+A +N+DE++ IIR S N E A   +  RSW   SDI +L+D     D+  
Sbjct: 181 RTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDIINLLDVSARPDELE 240

Query: 439 YTIGSDGT-MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             +G  G   YLS  Q  AILELRL RLTG+  +++  E   L ++I + L ILSS  RL
Sbjct: 241 ENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERL 300

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++EL  VK +    R T I     D++ ED I +ED+VVT+SH GYVK  PL+ Y 
Sbjct: 301 MEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYE 360

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG+S   M++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ 
Sbjct: 361 AQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWLKVYQLPQASRGARGRP 420

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++NIL L + ERIT I+P    E    + +VV AT  G V++  L++F +   +G IA+ 
Sbjct: 421 IVNILPLQENERITAILPVSAYE---EDKFVVMATAGGIVKKIALTEFSRPRSNGIIALN 477

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   DE++ V+     N+I+L +  G+ VRF  +A+R   GR + GVRGI LA       
Sbjct: 478 LRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA------- 529

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                                       + + EEI+    ++S++ NI +     +   E
Sbjct: 530 ------------------LTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGE 571

Query: 798 QFILTVSEK 806
             ILT ++K
Sbjct: 572 GAILTATQK 580



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 19/226 (8%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              QE+ ++  +  G     P++       R   G     + + D +  + +    D   
Sbjct: 335 LIAQEDVVVTLSHEGYVKYQPLTDYEA-QRRGGKGKSATKMKEEDFIEKLLVANTHDTIL 393

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                   Y   +    +   G                 I+         +++F++  + 
Sbjct: 394 CFSSRGRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEEDKFVVMATA 453

Query: 806 KGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
            G  K+ +  +F    SN    GI A ++        L+ V   + +++I+L S +G ++
Sbjct: 454 GGIVKKIALTEFSRPRSN----GIIALNLRD---EDELIGVDITDGSNEIMLFSSQGRVV 506

Query: 864 RVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIV 903
           R   N +R   R   GV           + DE  V +E I +    
Sbjct: 507 RFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAE 552



 Score = 77.5 bits (189), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           AD    +   + +    R    + +        + +     +   ++L  +E  ++T+S 
Sbjct: 288 ADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSH 347

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R GKG  AT + + + I  L      N +D I+  S +G L  +
Sbjct: 348 EGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKL---LVANTHDTILCFSSRGRLYWL 404

Query: 866 PVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
            V ++  ASR  +G   V I    ++ER+ ++  +   E  
Sbjct: 405 KVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED 445


>gi|145629331|ref|ZP_01785130.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978834|gb|EDJ88557.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 187

 Score =  369 bits (947), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 116/191 (60%), Positives = 145/191 (75%), Gaps = 7/191 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 173

Query: 181 GIAVGMATNIP 191
           GIAVGMATNIP
Sbjct: 174 GIAVGMATNIP 184


>gi|7264704|gb|AAF44319.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  368 bits (944), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 132/164 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|308072531|dbj|BAJ21888.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 186

 Score =  367 bits (943), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 112/185 (60%), Positives = 140/185 (75%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPH
Sbjct: 1   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ K
Sbjct: 61  GDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN
Sbjct: 121 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDN 180

Query: 209 PDIDL 213
            D  L
Sbjct: 181 KDASL 185


>gi|308198941|dbj|BAJ22605.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198943|dbj|BAJ22606.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198945|dbj|BAJ22607.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198947|dbj|BAJ22608.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198949|dbj|BAJ22609.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198959|dbj|BAJ22614.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198961|dbj|BAJ22615.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  367 bits (942), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 113/186 (60%), Positives = 141/186 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDL 213
           N D  L
Sbjct: 181 NKDASL 186


>gi|308198953|dbj|BAJ22611.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 194

 Score =  366 bits (939), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 112/191 (58%), Positives = 144/191 (75%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + 
Sbjct: 123 DIDKDTVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLY 182

Query: 205 VIDNPDIDLDA 215
           ++D+ D  L+ 
Sbjct: 183 LLDSKDASLEE 193


>gi|284049781|emb|CBJ15408.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 186

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 109/186 (58%), Positives = 147/186 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++V + RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVFVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP+I  
Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180

Query: 214 DALMEI 219
             LME 
Sbjct: 181 QELMEY 186


>gi|327197938|ref|YP_004306255.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
 gi|306009258|gb|ADM73653.1| putative DNA gyrase subunit A-topoisomerase [Lactococcus phage 949]
          Length = 704

 Score =  366 bits (939), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 184/747 (24%), Positives = 335/747 (44%), Gaps = 70/747 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I    +   + ++   Y+  V+L RAIPD RDGLKP +RRIL+ M +M      ++ K 
Sbjct: 2   EIVEKELQHIVTDNMGQYSTYVLLSRAIPDFRDGLKPSYRRILWAMQEMKAT---RFTKS 58

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-AAERYTEC 133
             ++G VM  YHPHG  + Y  +  MAQ  S    ++ G+GNFG    +    AERYTE 
Sbjct: 59  FNVAGAVML-YHPHG--STYPTMVGMAQKDSQLNPMVIGKGNFGQHASELAFGAERYTEV 115

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           +L      ++ D+ K  VDF  NYDG+ + P V   +YP +L     GI VG +++IP+ 
Sbjct: 116 KLSAIGLDMMADVKKGGVDFIDNYDGTRRIPEVFPVKYPTILAYAQSGIGVGFSSSIPSF 175

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIVIRG 252
           N  E+ +  +  I++ +  L         PDF TGA  I     IK+    G GSI  R 
Sbjct: 176 NTTELCEAIIKRIEDNEQTLLI-------PDFGTGAYIINDPDVIKSINENGSGSINQRA 228

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                +   D  +I+V EIPY   K  ++E+I +L +E ++ ++A + D S  +G  +VI
Sbjct: 229 KV---EFDKDSREIIVKEIPYGTTKEKIIERIIKLNKEDKLKEVAKVEDTSGLKGLEIVI 285

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEVVVR 371
             KRG   + +L +LY+ T +Q+ +S N++ +N      +  +  ++  ++ +R +   R
Sbjct: 286 TAKRGVDLEQLLEKLYQMTPMQASYSTNLMVINREGLPEKMGVWTLIAKWLDWRTDTYQR 345

Query: 372 RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
                +   + +  +L GL     +L+ V++IIR S +                      
Sbjct: 346 MITKDIQTKQVQLEILYGLENIKDDLEHVIKIIRNSTD---------------------- 383

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
                 +          LS++Q   +  L+L  LT        + + SL  EI++    +
Sbjct: 384 -----DNVIQNLSSEFNLSKLQAERVSGLKLKNLTTTFIKKQLSSIKSLEKEIEQLEWTV 438

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV----REDMVVTV-SHLG 546
               R+  +I Q++  V  +  TPR++++++  +  +           E  V  + +  G
Sbjct: 439 EKPQRIHKLIVQDMKDVIAQFGTPRKSQLIDKSIVAKKAKLSPVNTVEEYNVKVIVTKDG 498

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
           YVK++PL+  R       G + +  ++ D  T          +L F++   VYK+++  L
Sbjct: 499 YVKKIPLTSLR-------GNAEIQFKEGDTPTSEIDTDNGEELLIFTNKQNVYKKQLNDL 551

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
               P+  G  + +++ L +GE I  I+   +     +  YV+   + G V +  +  + 
Sbjct: 552 SDTKPKDLGNYIPSLIDLEKGEEIKGIITLSK-----DTKYVLLGFEDGKVAKVNVEAYR 606

Query: 667 QINRSGKIAMKLDSRDEILSVET---CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
              +      KL +      +      T + DI+  ++  + +    S I     + + G
Sbjct: 607 TSTKRS----KLKNGVVGKMIVLLTTLTDDVDIMSISESNKAIVTNTSMISAKNSKATQG 662

Query: 724 VRGISLAKGDQVISMAIVLHADADYDE 750
           +    L +G+ +  + ++   + D  E
Sbjct: 663 ITNQKLKEGESIKKLLVLQEDEEDNRE 689



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 91/249 (36%), Gaps = 19/249 (7%)

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL-LTTKLGQCVRFPISAIRVFA 717
           ++ ++ F    +S  I   + ++   LS     +E ++  + TK G   + P++++R   
Sbjct: 453 KDVIAQFGTPRKSQLIDKSIVAKKAKLSPVNTVEEYNVKVIVTKDGYVKKIPLTSLR--- 509

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS-LK 776
                G   I   +GD   S     + +           +      L     +++ + + 
Sbjct: 510 -----GNAEIQFKEGDTPTSEIDTDNGEELLIFTNKQNVYKKQLNDLSDTKPKDLGNYIP 564

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI-SNRSGKGIRATDVSKI 835
           +   +E     +    L    +++L   E G   + +   +R  + R       + +   
Sbjct: 565 SLIDLEKGEEIKGIITLSKDTKYVLLGFEDGKVAKVNVEAYRTSTKR-------SKLKNG 617

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR-IASRATKGVVIFSTAKDERVVSV 894
                +V +  + D+  I+ +S+    I    + I    S+AT+G+      + E +  +
Sbjct: 618 VVGKMIVLLTTLTDDVDIMSISESNKAIVTNTSMISAKNSKATQGITNQKLKEGESIKKL 677

Query: 895 ERIRESEIV 903
             ++E E  
Sbjct: 678 LVLQEDEED 686


>gi|262477436|gb|ACY68195.1| DNA gyrase subunit A [Escherichia coli]
          Length = 171

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 106/171 (61%), Positives = 135/171 (78%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG
Sbjct: 1   LDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  DLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMVDLEKE 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++
Sbjct: 121 TVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 171


>gi|308198935|dbj|BAJ22602.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198951|dbj|BAJ22610.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198955|dbj|BAJ22612.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  366 bits (938), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 112/186 (60%), Positives = 141/186 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 2   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 61

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 62  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 121

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 122 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 181

Query: 208 NPDIDL 213
           + D  L
Sbjct: 182 SKDASL 187


>gi|255030250|ref|ZP_05302201.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 213

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 103/211 (48%), Positives = 144/211 (68%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
             E+ I  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M   G    K 
Sbjct: 3   NPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNVEGNTAEKG 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G V+G YHPHG++++Y+A+ RM+QDW +R +LIE  GN GSVDGDPPAA RY
Sbjct: 63  FRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNMLIEMHGNNGSVDGDPPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   +  LL D+ K+TVDF PN+D +  EP VL AR+PN+LVNG  GI+ G AT+I
Sbjct: 123 TEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLPARFPNLLVNGSTGISAGYATDI 182

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           P HNL E+++  +  +DNP    D +M+I++
Sbjct: 183 PPHNLTEIIEAVIKRLDNPLCTTDDIMKIVK 213


>gi|308198931|dbj|BAJ22600.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 112/186 (60%), Positives = 141/186 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDL 213
           + D  L
Sbjct: 181 SKDASL 186


>gi|308198957|dbj|BAJ22613.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  365 bits (937), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 112/186 (60%), Positives = 141/186 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHP
Sbjct: 1   SYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ 
Sbjct: 61  HGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDID 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D
Sbjct: 121 KDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLD 180

Query: 208 NPDIDL 213
           + D  L
Sbjct: 181 SKDTSL 186


>gi|213864879|ref|ZP_03386998.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 178

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 104/172 (60%), Positives = 137/172 (79%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           L K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGM
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGM 178


>gi|7264706|gb|AAF44320.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  365 bits (936), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|19702310|gb|AAL93251.1|AF487466_1 DNA Gyrase A [Yersinia pestis]
 gi|7264710|gb|AAF44322.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDRAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|28372382|gb|AAO38030.1| GyrA [Campylobacter jejuni]
          Length = 181

 Score =  364 bits (935), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 109/179 (60%), Positives = 138/179 (77%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 3   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 62

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 63  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 122

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG +
Sbjct: 123 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLL 181


>gi|21327937|dbj|BAC00774.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 177

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 107/177 (60%), Positives = 136/177 (76%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+  IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDLPIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQD+S R  L++GQGNFGS+DGD  AA RYTE R+ K    LL D+ KDT+DF  NYDG
Sbjct: 61  MAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           + +EP VL AR+PN+L NG  GIAVGMATNIP HNL E+++G +++  NPDI +  L
Sbjct: 121 NEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAEL 177


>gi|75763035|ref|ZP_00742825.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489482|gb|EAO52908.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 531

 Score =  364 bits (934), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 204/546 (37%), Positives = 309/546 (56%), Gaps = 35/546 (6%)

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           G   AA R TE  L   A  LL DL K+TV+F    + + +EPVVL A +PN+LVNG  G
Sbjct: 2   GTQAAAMRNTEAPLSPIASELLRDLDKETVEFVSTLNDTSEEPVVLPAAFPNLLVNGSTG 61

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           I+ G AT IP H+LGEV+D  +  ID P+  +D L+ +++GPDFPTG +I G  GIK AY
Sbjct: 62  ISAGYATEIPPHHLGEVIDATMMRIDKPNSTVDDLLTVMKGPDFPTGGIIQGIDGIKKAY 121

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            TG+G I+IRG + IE   G ++QIV+TEIPY+VNKA +++K+ EL  +K++  IA++RD
Sbjct: 122 ETGKGKIIIRGKAEIETVRGGKQQIVITEIPYEVNKANLVKKMDELRLDKKLDGIAEVRD 181

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           E+DR G R+V+ELK+  +A+ ILN LY+ T LQ  ++ NMVA+N  +P   TL  IL A+
Sbjct: 182 ETDRTGLRIVVELKKEVNAEGILNYLYKNTDLQIPYNFNMVAINNRRPTLMTLPKILDAY 241

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           +  ++EV+ RR++Y L KA +R H++ GL  A++ LD+V+  IR S +   A+  L  + 
Sbjct: 242 IGHQKEVITRRSQYELRKAENRQHIVEGLKKALSILDQVIETIRASKDKRNAKDNLSAK- 300

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                                       +E Q  AI+ L+L RLT      ++ E + L 
Sbjct: 301 -------------------------FGFTEAQAEAIVSLQLYRLTNTDITALQEEADELN 335

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT--RIVEGLLDMEDEDCIVREDMV 539
            +I E   IL S  RLL +IK +L  VK      RR         + ++ E  I +ED++
Sbjct: 336 KKILELQSILQSEKRLLQVIKTDLKRVKKTYSDDRRAIIEEQIEEIKIDVEVMIPQEDVI 395

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VTV+  GYVKR     + A            M++ D + + F  +T  +VL F+S G   
Sbjct: 396 VTVTKEGYVKRTGWRSHNASNGKD-----FGMKEGDILLERFDTNTTETVLLFTSKGNYI 450

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
              V+ +P    +  G+ + NI+SL++ E I  +   P  E      ++VF T++G +++
Sbjct: 451 YLPVYEMPDIRWKDLGQHVANIVSLDRDETIIWVTVVPNFE--EEKRFIVFVTRNGMIKK 508

Query: 660 NKLSDF 665
            +L+ +
Sbjct: 509 TELNQY 514



 Score = 43.6 bits (101), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 23/140 (16%)

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
              +     +    +   + +  +E  I+TV+++G+ KRT             G R+ + 
Sbjct: 368 DDRRAIIEEQIEEIKIDVEVMIPQEDVIVTVTKEGYVKRT-------------GWRSHNA 414

Query: 833 SKINEIGA-----LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR---ATKGV-VIF 883
           S   + G      L+  F  N  + ++L + KG  I +PV E+    R     + V  I 
Sbjct: 415 SNGKDFGMKEGDILLERFDTNTTETVLLFTSKGNYIYLPVYEMPDI-RWKDLGQHVANIV 473

Query: 884 STAKDERVVSVERIRESEIV 903
           S  +DE ++ V  +   E  
Sbjct: 474 SLDRDETIIWVTVVPNFEEE 493


>gi|308198933|dbj|BAJ22601.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 190

 Score =  364 bits (933), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 141/187 (75%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPH
Sbjct: 3   YLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPH 62

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ K
Sbjct: 63  GDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDK 122

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+
Sbjct: 123 DTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDS 182

Query: 209 PDIDLDA 215
            D  L+ 
Sbjct: 183 KDASLEE 189


>gi|308072529|dbj|BAJ21887.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  364 bits (933), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 110/183 (60%), Positives = 138/183 (75%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG
Sbjct: 1   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KD
Sbjct: 61  DTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 120

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN 
Sbjct: 121 TVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNK 180

Query: 210 DID 212
           D  
Sbjct: 181 DAS 183


>gi|7264712|gb|AAF44323.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  363 bits (932), Expect = 6e-98,   Method: Composition-based stats.
 Identities = 108/164 (65%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPH ++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHCDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|113126858|gb|ABI30277.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243299|gb|ABS71822.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243303|gb|ABS71824.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|154243305|gb|ABS71825.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 104/165 (63%), Positives = 132/165 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|154243307|gb|ABS71826.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 103/165 (62%), Positives = 132/165 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + R+AQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|7264708|gb|AAF44321.1| gyrase A [Yersinia pestis]
          Length = 164

 Score =  362 bits (929), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 108/164 (65%), Positives = 131/164 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPH ++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHDDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL KDTVDF
Sbjct: 61  YDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            PNYDG+ Q P V+  R PN+LVNG  GIAVGMATNIP HNL E
Sbjct: 121 VPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSE 164


>gi|31745507|gb|AAP55227.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  362 bits (928), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|80159786|ref|YP_398530.1| putative DNA gyrase A subunit [Clostridium phage c-st]
 gi|78675376|dbj|BAE47798.1| putative DNA gyrase A subunit [Clostridium phage c-st]
          Length = 752

 Score =  361 bits (927), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 189/801 (23%), Positives = 343/801 (42%), Gaps = 61/801 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +   +Q+ ++ +A  VI+   +P + DGL PV+R++L+ + +  V  +K Y+K  R
Sbjct: 2   IKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLR 59

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG---SVDGDPPAAERYTEC 133
            S   M  Y+  G+  +  A+  MA +  ++   ++ +G+FG   S  G   A+ RY EC
Sbjct: 60  ASSMSMV-YYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKG-ASPRYIEC 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L ++ K+ V  + N+D +  EP+VL +  PNVL+N    IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIRG 252
           NL +  D  +  I   D  +D  ++II+ PD P  G VI  +      Y TG GS  + G
Sbjct: 177 NLIDTCDSIINYIQTKD--IDKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +++         + EIPY+     +  K+ E   +    +I D+ D SDR+G ++ I
Sbjct: 235 KYKMKQCDK-YNIFSIYEIPYETTIEDIENKLREKCYKGLFKEIIDIHDASDRKGIQLDI 293

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVA--LNGYKPERFTLIGILKAFVAFREEVVV 370
            LK+  +    +++L +YT  +S F  N     L+G  P   +L  I   ++  R   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYTPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
               Y + K  +  + L GL I    LD+ ++IIR S   + A  EL++           
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKY---------- 403

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q   I  +RL  +      +    ++ L   + +    
Sbjct: 404 ----------------FKLNKEQAEYIATIRLVNINQDWILNKLQNIDELSSNVNKLNTD 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYV 548
            +S   +  II  +L  VK +   PRRT I+      +   ED +   +  + ++   Y+
Sbjct: 448 YNSEQTIKEIIISQLEEVKKKFGKPRRTEIIYEDEIADVSHEDLVEDFNPTLVLTEQQYI 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K+  +                 ++D+D +      +    +L F++ G V   KV+ L  
Sbjct: 508 KKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDE 556

Query: 609 GSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             P   G  L N+L   L   E++  I    +         V+   ++GNV R  L ++ 
Sbjct: 557 HKPSTYGDFLPNLLGEYLQDNEKVIYISTTKDY-----KGSVIAVFENGNVARIDLQEYK 611

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                       ++   ++S+   T + D+LL ++ G+ +    S +R    RN+ GV G
Sbjct: 612 SKQNRQIPMSAYNTNSNLISIAVITTDVDVLLVSQEGKALIINTSQLRPTKSRNTQGVVG 671

Query: 727 ISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           + +  + ++VI   I +  D +++      K        I+ + +E  +     +     
Sbjct: 672 MKIDPENNKVIGSIIGVTVDDNFNVETEKGKSKFIMLNDIAPNGKESMTEYLKGNRNTQG 731

Query: 786 SEERCQELKLKEQFILTVSEK 806
           +       K  +   LT  E 
Sbjct: 732 NFIYNTRQKNDKVIKLTQPEN 752



 Score = 66.0 bits (159), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D+++      + D            +     L             +   E     
Sbjct: 518 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEYLQDN 577

Query: 788 ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVA 843
           E+   +   + +   ++ V E G   R    +++   NR         +S  N    L++
Sbjct: 578 EKVIYISTTKDYKGSVIAVFENGNVARIDLQEYKSKQNR------QIPMSAYNTNSNLIS 631

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
           +  +  +  ++LVS +G  + +  +++R   SR T+GVV      ++ +V+ 
Sbjct: 632 IAVITTDVDVLLVSQEGKALIINTSQLRPTKSRNTQGVVGMKIDPENNKVIG 683


>gi|315441935|ref|YP_004074814.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV),
           subunit alpha [Mycobacterium sp. Spyr1]
 gi|315260238|gb|ADT96979.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Mycobacterium sp. Spyr1]
          Length = 711

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 208/758 (27%), Positives = 332/758 (43%), Gaps = 90/758 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT  I    E+  + +   S  DE  N Y LT+A+  +  RAIP   DGLKP  RR+L+ 
Sbjct: 1   MTATI----EQNPELVLDQS-ADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQ 55

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +  +    K  K ++I   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  
Sbjct: 56  MHESRLLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPR 114

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           + GD PAA+RYTE RL      L  +L    V     +DG + EP VL A++P +L NG 
Sbjct: 115 IQGDIPAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGA 174

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIA G AT +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G  G++ 
Sbjct: 175 VGIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLRE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
              TGRG   +RG   ++     +  I+ TE+P  V    + ++I  LV    +  +AD+
Sbjct: 235 YITTGRGLFTVRGTVSVD----GKNCII-TELPPGVASGTVQDRIRALVESGEMAGVADM 289

Query: 300 RDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
            D +D R G R+V+  KRG SA+ I +QL   T L+S F+ ++VAL+  + P  +++  +
Sbjct: 290 SDLTDRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVREL 349

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           + AF++ R+ VV+ R++Y L K   R H++ GL     ++D  V IIR S   + AR  L
Sbjct: 350 IAAFLSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +R                            +  VQ   +L L+L RLT L   +++ E 
Sbjct: 410 QER--------------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEA 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL---DTPRRTRIVEGLLDMEDEDCIV 534
             L  E     +++S+      +I QEL+         +  RRT +      +   +   
Sbjct: 444 EKLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDYDATPVAANN--- 500

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                   S  G  +R               +     R +D            S     S
Sbjct: 501 --------SEDGPRER---------------KVNAAWRLDDRGVF------SDSHGTLLS 531

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  +          +        I  + ++                     ++   T+ 
Sbjct: 532 SGLGWAVWTDGRIKFTTGGGLPFKIRDIPVSPDITGLLQSGVLA-----PGSHLALITRR 586

Query: 655 GNVRRNKLSDFIQINR--SGKIAMKLDSR---DEILSVET--CTQENDILLTTKLGQCVR 707
           G V R   +         +G   +KL +    D +++     C     IL  ++ G  V 
Sbjct: 587 GRVLRIDPAAVNPQGAAGNGVAGVKLAAGHPEDSVIAALPLTCGNGEAILSVSEKGWKVT 646

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGD-QVISMAIVLHA 744
             ++ I    GR   GV     AKG+  ++S ++  + 
Sbjct: 647 -DVADI-PVKGRGGAGVGFHPFAKGETTLVSASVSPNG 682



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 4/142 (2%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
              R+       +     D  V  +I+      +      +  ++ +G   R        
Sbjct: 540 TDGRIKFTTGGGLPFKIRDIPVSPDITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNP 599

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +G G+    ++  +   +++A  P+   + + I+ VS+KG  +   V +I +  R  
Sbjct: 600 QGAAGNGVAGVKLAAGHPEDSVIAALPLTCGNGEAILSVSEKGWKV-TDVADIPVKGRGG 658

Query: 878 KGVVIFSTAKDE-RVVSVERIR 898
            GV     AK E  +VS     
Sbjct: 659 AGVGFHPFAKGETTLVSASVSP 680


>gi|253682983|ref|ZP_04863769.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
 gi|253560812|gb|EES90275.1| DNA gyrase/topoisomerase IV, subunit A [Clostridium phage D-1873]
          Length = 752

 Score =  361 bits (925), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 189/801 (23%), Positives = 341/801 (42%), Gaps = 61/801 (7%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +   +Q+ ++ +A  VI+   +P + DGL PV+R++L+ + +  V  +K Y+K  R
Sbjct: 2   IKRDLPRVLQDEFIGFASEVIVNN-LPSI-DGLLPVNRKVLWALHRNKVTPDKNYIKLLR 59

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG---SVDGDPPAAERYTEC 133
            S   M  Y+  G+  +  A+  MA +  ++   ++ +G+FG   S  G   A+ RY EC
Sbjct: 60  ASSMSMV-YYIFGDIPLTTAMKNMANN-GVKYFYLDPKGSFGDKQSKTGKG-ASPRYIEC 116

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           RL K +  +L ++ K+ V  + N+D +  EP+VL +  PNVL+N    IAVG+A+ I  H
Sbjct: 117 RLSKYSMDILKNIDKNIVPMKRNFDDTEDEPIVLPSMIPNVLINTSQSIAVGLASKIAGH 176

Query: 194 NLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP-TGAVILGRTGIKNAYATGRGSIVIRG 252
           NL +  D  +  I   D  +D  ++II+ PD P  G VI  +      Y TG GS  + G
Sbjct: 177 NLIDTCDSIINYIQTKD--IDKSIDIIKCPDLPLGGKVIYDKNTFDQIYKTGHGSFTLLG 234

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
              +++         + EIPY+     +  K+ E   +    +I D+ D SDR+G ++ I
Sbjct: 235 KYKMKQCDK-YNIFSIYEIPYETTIEDIENKLREKCDKGFFKEIIDIHDASDRKGIQLDI 293

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVA--LNGYKPERFTLIGILKAFVAFREEVVV 370
            LK+  +    +++L +Y   +S F  N     L+G  P   +L  I   ++  R   + 
Sbjct: 294 YLKKNTNLKQFISKLRKYIPYESKFPCNFTILDLDGKTPLLMSLQDIFDRWIQHRVNCIK 353

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
               Y + K  +  + L GL I    LD+ ++IIR S   + A  EL++           
Sbjct: 354 NEMLYDVKKYSEELNKLNGLKIINNELDKAIQIIRSSKTEKVAIEELIKY---------- 403

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                             L++ Q   I  +RL  +      +    ++ L   + +    
Sbjct: 404 ----------------FKLNKEQAEYIATIRLVNINQDWILNKLQNIDELSSNVNKLNTD 447

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDMVVTVSHLGYV 548
            +S   +  II  +L  VK +   PRRT I+      +   ED +   +  + ++   Y+
Sbjct: 448 YNSEQTIKEIIISQLEEVKKKFGKPRRTEIIYEDEIADVSHEDLVEDFNPTLVLTEQQYI 507

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           K+  +                 ++D+D +      +    +L F++ G V   KV+ L  
Sbjct: 508 KKNRVFS-----------QSQKLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDE 556

Query: 609 GSPQARGKALINILS--LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
             P   G  L N+L   L   E++  I    +         V+   ++GNV R  L ++ 
Sbjct: 557 HKPSTYGDFLPNLLGEYLQDNEKVIYISTTKDY-----KGSVIAVFENGNVARIDLQEYK 611

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRG 726
                       ++   ++S+   T + D+LL ++ G+ +    S +R    RN+ GV G
Sbjct: 612 SKQNRQIPMSAYNTDSNLISIAVITTDVDVLLVSQEGKALIVNTSQLRPTKSRNTKGVVG 671

Query: 727 ISLAKGD-QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           + +   D +VI   I +  D +++      K        I+ + +E  +     +     
Sbjct: 672 MKIDPEDNKVIGSIIGVTVDHNFNIETEKGKSKFIMLNDIAPNGKESMTEYLKGNRNTQG 731

Query: 786 SEERCQELKLKEQFILTVSEK 806
           +       K  +   LT  E 
Sbjct: 732 NFIYNTRQKNDKVIKLTQPEN 752



 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L   D+++      + D            +     L             +   E     
Sbjct: 518 KLKDDDKILQFHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEYLQDN 577

Query: 788 ERCQELKLKEQF---ILTVSEKGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVA 843
           E+   +   + +   ++ V E G   R    +++   NR         +S  N    L++
Sbjct: 578 EKVIYISTTKDYKGSVIAVFENGNVARIDLQEYKSKQNR------QIPMSAYNTDSNLIS 631

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIFSTA-KDERVVS 893
           +  +  +  ++LVS +G  + V  +++R   SR TKGVV      +D +V+ 
Sbjct: 632 IAVITTDVDVLLVSQEGKALIVNTSQLRPTKSRNTKGVVGMKIDPEDNKVIG 683


>gi|325136790|gb|EGC59389.1| DNA gyrase, A subunit [Neisseria meningitidis M0579]
          Length = 517

 Score =  360 bits (924), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 152/516 (29%), Positives = 259/516 (50%), Gaps = 26/516 (5%)

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT----------M 447
           DE++++I+ SPN   A+ +L+ R W +S +++++         +  +G            
Sbjct: 1   DEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRSGLDLEMMRPEGLAANIGLKEQGY 60

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
           YLSE+Q  AIL + L  LTGL +++I     +L  +I + +DILS   R+  II+ EL  
Sbjct: 61  YLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKIIDFVDILSKPERITQIIRDELEE 120

Query: 508 VKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
           +K      RR+ I     D+ DED I + +MVVT++H GY+K  P + Y+AQRRGG+G+ 
Sbjct: 121 IKTNYGDERRSEINPFGGDIADEDLIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQ 180

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
               +DEDF+  LF+ +TH  ++ F++LG  +  KV++LP G   +RG+ + N++ L +G
Sbjct: 181 AAATKDEDFIETLFVANTHDYLMCFTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEG 240

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSV 687
           E+++ I+   E      + YV FAT  G V++ +LS F  +   G  A+ L   D ++  
Sbjct: 241 EKVSAILAVREFP---EDQYVFFATAQGLVKKVQLSAFKNVRAQGIKAIALKEGDYLVGA 297

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
                 +DI+L + LG+ +RF  +     +G         +    D  I   I    + +
Sbjct: 298 AQTGGADDIMLFSNLGKAIRF--NEYWEKSG---------NDEAEDADIETEISDGIEDE 346

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             +    +       R     +  +  ++  +  +         E +     +LT +  G
Sbjct: 347 TADSENALPSGKHGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANG 406

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           +GKRT   D+   N+ G+G  A +  + N  G LVA   V + D ++L++  G LIR  V
Sbjct: 407 YGKRTPIADYSRKNKGGQGNIAINTGERN--GDLVAATLVGETDDLMLITSGGVLIRTKV 464

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +IR   RA  GV + +  + E +VS+ER+ E E  
Sbjct: 465 EQIRETGRAAAGVKLINLDEGETLVSLERVAEDESE 500



 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 102/266 (38%), Gaps = 40/266 (15%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  V   +  G VK+V LS ++  R  G     + +++ D++           ++ F
Sbjct: 252 FPEDQYVFFATAQGLVKKVQLSAFKNVRAQG--IKAIALKEGDYLVGAAQTGGADDIMLF 309

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTI------------------- 633
           S+LG   +   +    G+ +A    +   +S    +                        
Sbjct: 310 SNLGKAIRFNEYWEKSGNDEAEDADIETEISDGIEDETADSENALPSGKHGVRPSGRGSG 369

Query: 634 ---------------MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
                          +     E+  + L V+ AT +G  +R  ++D+ + N+ G+  + +
Sbjct: 370 GLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGNIAI 429

Query: 679 DSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           ++ +     ++     + +D++L T  G  +R  +  IR   GR + GV+ I+L +G+ +
Sbjct: 430 NTGERNGDLVAATLVGETDDLMLITSGGVLIRTKVEQIRE-TGRAAAGVKLINLDEGETL 488

Query: 736 ISMAIVLHADADYDERICYMKHMSAQ 761
           +S+  V   +++  +          +
Sbjct: 489 VSLERVAEDESELSDASVISNVTEPE 514


>gi|31745481|gb|AAP55214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  360 bits (923), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|308072560|dbj|BAJ21897.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 110/183 (60%), Positives = 138/183 (75%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+
Sbjct: 1   DYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDT
Sbjct: 61  IAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDT 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           VDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D
Sbjct: 121 VDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKD 180

Query: 211 IDL 213
             L
Sbjct: 181 ASL 183


>gi|313757053|gb|ADR78334.1| gyrase [Ferroplasma acidiphilum]
          Length = 176

 Score =  360 bits (923), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 106/173 (61%), Positives = 133/173 (76%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I +E++ SYL YA++VI+ RAIPD RDGLKPV RRI++ M ++GV  +K Y K ARI G
Sbjct: 4   PIEEEIKTSYLDYAMSVIVSRAIPDFRDGLKPVQRRIIYSMYELGVTHDKPYKKSARIIG 63

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           E MGKYHPHG+++IY+ALARMAQD+SLR  LI+GQGNFGS+DGD PAA RYTE RL K A
Sbjct: 64  ETMGKYHPHGDSSIYEALARMAQDFSLRYTLIDGQGNFGSIDGDAPAAMRYTEARLGKMA 123

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             ++ D+ K+TV F PN+DGS  EPV   +R P +L+NG  GIAVGMATN+  
Sbjct: 124 EEMVRDIEKETVPFSPNFDGSLDEPVYFPSRIPQLLINGTSGIAVGMATNMVP 176


>gi|194293785|gb|ACF39987.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293791|gb|ACF39990.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293797|gb|ACF39993.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293801|gb|ACF39995.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293815|gb|ACF40002.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 231/311 (74%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|31745483|gb|AAP55215.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
          Length = 163

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|308198965|dbj|BAJ22617.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 188

 Score =  359 bits (922), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 110/184 (59%), Positives = 139/184 (75%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           L Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG
Sbjct: 4   LDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHG 63

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KD
Sbjct: 64  DIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKD 123

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           TVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ 
Sbjct: 124 TVDFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSK 183

Query: 210 DIDL 213
           D  L
Sbjct: 184 DASL 187


>gi|194293783|gb|ACF39986.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/305 (55%), Positives = 230/305 (75%), Gaps = 1/305 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQR 420
            L++R
Sbjct: 300 TLIER 304


>gi|194293771|gb|ACF39980.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293773|gb|ACF39981.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293777|gb|ACF39983.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293779|gb|ACF39984.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293781|gb|ACF39985.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293787|gb|ACF39988.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293793|gb|ACF39991.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293803|gb|ACF39996.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293811|gb|ACF40000.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 231/311 (74%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|68067066|ref|XP_675504.1| DNA GyrAse a-subunit [Plasmodium berghei strain ANKA]
 gi|56494726|emb|CAH98020.1| DNA GyrAse a-subunit, putative [Plasmodium berghei]
          Length = 653

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 150/521 (28%), Positives = 261/521 (50%), Gaps = 63/521 (12%)

Query: 9   DEEEEKGIT----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           + + +K I      V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++ 
Sbjct: 148 ENQNKKLIKGEYYDVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEIN 207

Query: 65  VEWNKK-YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
             ++KK Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+  
Sbjct: 208 KGYDKKSYKKCARIVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEY- 266

Query: 124 PPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
             AA RYTE R+    +  LLD++  + +D+  N+DG+ +EP VLC++ P +L+NG  GI
Sbjct: 267 NAAAMRYTEARISDFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGI 326

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAY 241
           AV + TNIP+HN+ +V++  +  + N  I  D L  II+GPDF TG +I+ +   +++ Y
Sbjct: 327 AVSILTNIPSHNIVDVINASINFLINEKITNDELFNIIKGPDFSTGGIIITKKDTLRDIY 386

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQI----------------------VVTEIPYQVNKAA 279
            TG+G+IVIR     E    ++  I                      ++  +P  V    
Sbjct: 387 NTGKGNIVIRSNIFYEYAHNNKTYIHHINELGNLENLECDNKSSKKLIIKNLPPNVKPNK 446

Query: 280 MLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSL 333
           ++E I  ++ E++      ++ +RDES++   R+V+EL++ +  + I N    L +YTS+
Sbjct: 447 LIENIITVLNERKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLLKYTSM 506

Query: 334 QSLFSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +  +  N V +       +F+L   L+ +   R + + +  +   N  +   +++     
Sbjct: 507 EIDYHCNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKELNIIDLYLT 566

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
               + +++  +  + N E  +                                  L+E 
Sbjct: 567 IQKKILDIISFLHKNQNIEQIQN--------------------------YLKSNFKLNED 600

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           Q + IL +++ +L  +   +      +L  + +    I+ +
Sbjct: 601 QIKYILSMKIQKLINIKNINFDIRKYNLLNKRQSNQYIIDN 641


>gi|31745489|gb|AAP55218.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745501|gb|AAP55224.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|194293775|gb|ACF39982.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293805|gb|ACF39997.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 231/311 (74%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRIVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|194293795|gb|ACF39992.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|194293799|gb|ACF39994.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 167/311 (53%), Positives = 231/311 (74%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VI+LKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIDLKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|154243301|gb|ABS71823.1| gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 165

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 103/165 (62%), Positives = 131/165 (79%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+
Sbjct: 1   MSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YD + RMAQ +SL  +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  YDTIVRMAQPFSLCYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 120

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 VDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 165


>gi|194293809|gb|ACF39999.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 231/311 (74%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKLASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|145221100|ref|YP_001131778.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
 gi|145213586|gb|ABP42990.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium gilvum
           PYR-GCK]
          Length = 716

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 212/792 (26%), Positives = 333/792 (42%), Gaps = 90/792 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           MT  I    E+  + +   S  DE  N Y LT+A+  +  RAIP   DGLKP  RR+L+ 
Sbjct: 1   MTATI----EQNPELVLDQS-ADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQ 55

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +  +    K  K ++I   V G  HPHG A++Y A A MA D+  R+ +I+GQG F  
Sbjct: 56  MHESRLLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAADF-QRVKVIDGQGAFPR 114

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           + GD PAA+RYTE RL      L  +L    V     +DG + EP VL A++P +L NG 
Sbjct: 115 IQGDIPAADRYTEMRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGA 174

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIA G AT +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G  G++ 
Sbjct: 175 VGIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDGLRE 234

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
              TGRG   +RG   ++     +  I+ TE+P  V    + ++I  LV    +  +AD+
Sbjct: 235 YITTGRGLFTVRGTVSVD----GKNCII-TELPPGVASGTVQDRIRALVESGEMAGVADM 289

Query: 300 RDESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGI 357
            D +D R G R+V+  KRG SA+ I +QL   T L+S F+ ++VAL+  + P  +++  +
Sbjct: 290 SDLTDRRNGLRIVVTAKRGHSAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVREL 349

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           + AF++ R+ VV+ R++Y L K   R H++ GL     ++D  V IIR S   + AR  L
Sbjct: 350 IAAFLSLRDSVVLHRSEYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGL 409

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +R                            +  VQ   +L L+L RLT L   +++ E 
Sbjct: 410 QER--------------------------FAIDAVQADYVLALQLRRLTKLDVIELQAEA 443

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL---DTPRRTRIVEGLLDMEDEDCIV 534
             L  E     +++S+      +I QEL+         +  RRT +      +   +   
Sbjct: 444 EKLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDYDATPVAANN--- 500

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
                   S  G  +R               +     R +D            S     S
Sbjct: 501 --------SEDGPRER---------------KVNAAWRLDDRGVF------SDSHGTLLS 531

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G  +          +        I  + ++                     ++   T+ 
Sbjct: 532 SGLGWAVWTDGRIKFTTGGGLPFKIRDIPVSPDITGLLQSGVLA-----PGSHLALITRR 586

Query: 655 GNVRR-----NKLSDFIQINRSGKIAMKLDSRDEILSVET--CTQENDILLTTKLGQCVR 707
           G V R                +G   +  D  D +++     C     IL  ++    V 
Sbjct: 587 GRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKVT 646

Query: 708 FPISAIRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
             ++ I    GR   GV      KG D ++S AI           +   K   A  +   
Sbjct: 647 -EVADI-PVKGRGGAGVGFHPFGKGEDALLSAAISATGYVRGTRTVRAEKRAKASIKGSG 704

Query: 767 GDTEEITSLKND 778
            D     +   D
Sbjct: 705 ADVTPADAAPAD 716



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 3/123 (2%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
              R+       +     D  V  +I+      +      +  ++ +G   R        
Sbjct: 540 TDGRIKFTTGGGLPFKIRDIPVSPDITGLLQSGVLAPGSHLALITRRGRVLRIDPAAVNP 599

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +G G+    +   +    ++A  PV+  + + I+ +S+K   +   V +I +  R  
Sbjct: 600 QGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWKV-TEVADIPVKGRGG 658

Query: 878 KGV 880
            GV
Sbjct: 659 AGV 661


>gi|126438285|ref|YP_001073976.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
 gi|126238085|gb|ABO01486.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. JLS]
          Length = 711

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 196/764 (25%), Positives = 325/764 (42%), Gaps = 98/764 (12%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           LT+A+  +  RAIP   DGLKP  RR+L+ M    +    K  K +++   V G  HPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 85

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
            A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL      L  +L   
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
            V     +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+  C A++  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++  D L+++I GPD+  GA ++G TG++    TGRG   +RG   ++  +      V+T
Sbjct: 205 NMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFTVRGTVTVDGKNC-----VIT 259

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLY 328
           E+P  V    + E+I  LV    +  +AD+ D +D R G R+V+  KRG +A+ I  QL 
Sbjct: 260 ELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHNAEQIREQLL 319

Query: 329 RYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             T L+S F+ ++VAL+  + P  +++  ++ AF++ R++VV+ R++Y L K   R H++
Sbjct: 320 ALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEKVTARRHLV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL +   ++D  V +IR S   + AR+ L  R                           
Sbjct: 380 AGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDR--------------------------F 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            +  VQ   +L L+L RLT L   +++ E   L  E  E  +++S+      +I +EL+ 
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAELTELVSNPDARRVVIDKELVE 473

Query: 508 VKDELDTP---RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                  P   RRT +                            +  P++   A     +
Sbjct: 474 TAKLFKGPEFDRRTVLDF--------------------------EATPITTGAADDGPRE 507

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
            +     R +D            S     + G  +                        L
Sbjct: 508 RKVNASWRLDDRGVF------SDSHGDLLTSGLGW---------AVWTDGRVKFTTGAGL 552

Query: 625 NQGERITTIMP----FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKL 678
               R   + P            +  ++   T+ G + R   +         +G   +KL
Sbjct: 553 PYKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKL 612

Query: 679 DSRDEILSV----ETCTQEND-ILLTTKLGQCVRFPISAIR--VFAGRNSVGVRGIS--L 729
            + D + +V          ++ IL  ++ G      ++ +      GR   GV G    +
Sbjct: 613 AAGDPMDTVIAALPLTCGNDEAILSISEKGW----KVTEVPDIPVKGRGGAGV-GFHPFV 667

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
              D ++S ++         +++       A  +          
Sbjct: 668 GGEDALLSASVSPTGFMRGKKKVRAENRAKASVKGSGDGVTPAE 711



 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
              R+       +     D  V  +I+      +      +  V+ +G   R        
Sbjct: 540 TDGRVKFTTGAGLPYKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVNP 599

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIIL-VSDKGTLIRVPVNEIRIASRAT 877
              +G G+    ++  + +  ++A  P+   ND+ IL +S+KG  +   V +I +  R  
Sbjct: 600 QGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKV-TEVPDIPVKGRGG 658

Query: 878 KGV 880
            GV
Sbjct: 659 AGV 661


>gi|194293807|gb|ACF39998.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  359 bits (920), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 230/311 (73%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL    P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNPPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|108802303|ref|YP_642500.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119871456|ref|YP_941408.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
 gi|108772722|gb|ABG11444.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. MCS]
 gi|119697545|gb|ABL94618.1| DNA gyrase/topoisomerase IV, subunit A [Mycobacterium sp. KMS]
          Length = 711

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 198/764 (25%), Positives = 326/764 (42%), Gaps = 98/764 (12%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           LT+A+  +  RAIP   DGLKP  RR+L+ M    +    K  K +++   V G  HPHG
Sbjct: 26  LTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHDSKLLPGNKPQKSSKVCSAVTGNLHPHG 85

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
            A++Y A A MA D+  R+ +I+GQG F  + GD PAA+RYTE RL      L  +L   
Sbjct: 86  GASMYGAAALMAADF-QRVKVIDGQGAFPRIQGDIPAADRYTEMRLSAPGAALTAELDSH 144

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
            V     +DG + EP VL A++P +L NG  GIA G AT +P HN  EV+  C A++  P
Sbjct: 145 AVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVMAACRALLKTP 204

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++  D L+++I GPD+  GA ++G TG++    TGRG   +RG   ++  +      VVT
Sbjct: 205 NMTDDRLVKLIPGPDWGCGATVVGETGLREYITTGRGQFTVRGTVTVDGKNC-----VVT 259

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKRGASADVILNQLY 328
           E+P  V    + E+I  LV    +  +AD+ D +D R G R+V+  KRG SA+ I  QL 
Sbjct: 260 ELPPGVASNTVQERIRALVESGEMSGVADMSDLTDRRNGLRIVVTAKRGHSAEQIREQLL 319

Query: 329 RYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             T L+S F+ ++VAL+  + P  +++  ++ AF++ R++VV+ R++Y L K   R H++
Sbjct: 320 ALTPLESTFAASLVALDENRVPRWWSVRELIAAFLSLRDKVVLHRSEYRLEKVTARRHLV 379

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            GL +   ++D  V +IR S   + AR+ L  R                           
Sbjct: 380 AGLMLIHLDIDAAVAVIRGSDTVDEARQGLQDR--------------------------F 413

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            +  VQ   +L L+L RLT L   +++ E   L  E  E  +++S+      +I +EL+ 
Sbjct: 414 AIDAVQADYVLALQLRRLTKLDVIELQAEAERLDAEFAELTELVSNPDARRVVIDKELVE 473

Query: 508 VKDELDTP---RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
                  P   RRT +                            + +P++   A     +
Sbjct: 474 TAKLFKGPEFDRRTVLDF--------------------------EAIPITTGAADDGPRE 507

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
            +     R +D            S     + G  +                        L
Sbjct: 508 RKVNASWRLDDRGVF------SDSHGDLLTSGLGW---------AVWTDGRVKFTTGAGL 552

Query: 625 NQGERITTIMP----FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKL 678
               R   + P            +  ++   T+ G + R   +         +G   +KL
Sbjct: 553 PYKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVNPQGAAGNGVAGVKL 612

Query: 679 DSRDEILSV----ETCTQEND-ILLTTKLGQCVRFPISAIR--VFAGRNSVGVRGIS--L 729
            + D + +V          ++ IL  ++ G      ++ +      GR   GV G    +
Sbjct: 613 AAGDPMDTVIAALPLTCGNDEAILSISEKGW----KVTEVPDIPVKGRGGAGV-GFHPFV 667

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
              D ++S ++         +++       A  +          
Sbjct: 668 GGEDALLSASVSPTGFMRGKKKVRAENRAKASVKGSGDGVTPAE 711



 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
              R+       +     D  V  +I+      +      +  V+ +G   R        
Sbjct: 540 TDGRVKFTTGAGLPYKIRDIPVAPDITGLLRSGVLPDGAHLALVTRRGKILRIDPAAVNP 599

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIIL-VSDKGTLIRVPVNEIRIASRAT 877
              +G G+    ++  + +  ++A  P+   ND+ IL +S+KG  +   V +I +  R  
Sbjct: 600 QGAAGNGVAGVKLAAGDPMDTVIAALPLTCGNDEAILSISEKGWKV-TEVPDIPVKGRGG 658

Query: 878 KGV 880
            GV
Sbjct: 659 AGV 661


>gi|194293813|gb|ACF40001.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 168/311 (54%), Positives = 230/311 (73%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F ++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFPKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|308199039|dbj|BAJ22654.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199055|dbj|BAJ22662.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  358 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 110/182 (60%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|308072562|dbj|BAJ21898.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072564|dbj|BAJ21899.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072570|dbj|BAJ21902.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072572|dbj|BAJ21903.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072580|dbj|BAJ21907.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198985|dbj|BAJ22627.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198991|dbj|BAJ22630.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199005|dbj|BAJ22637.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199009|dbj|BAJ22639.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199011|dbj|BAJ22640.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199015|dbj|BAJ22642.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199037|dbj|BAJ22653.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199043|dbj|BAJ22656.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199045|dbj|BAJ22657.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199051|dbj|BAJ22660.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  358 bits (918), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 110/182 (60%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|31745491|gb|AAP55219.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|31745497|gb|AAP55222.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  357 bits (917), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 131/163 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|31745493|gb|AAP55220.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745495|gb|AAP55221.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi A]
 gi|31745503|gb|AAP55225.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  357 bits (916), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|308198989|dbj|BAJ22629.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199007|dbj|BAJ22638.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199059|dbj|BAJ22664.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  357 bits (916), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|308198979|dbj|BAJ22624.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  357 bits (915), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|31745509|gb|AAP55228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  357 bits (915), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|194293789|gb|ACF39989.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  356 bits (914), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 167/311 (53%), Positives = 230/311 (73%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+ VDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNPVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++ F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINFQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|301014718|gb|ADK47158.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 166

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 105/166 (63%), Positives = 132/166 (79%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  IVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           YDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV++GC
Sbjct: 121 YDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGC 166


>gi|308072578|dbj|BAJ21906.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 187

 Score =  356 bits (914), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 109/181 (60%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|31745505|gb|AAP55226.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 163

 Score =  356 bits (913), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 102/163 (62%), Positives = 130/163 (79%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  VYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           F  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL
Sbjct: 121 FVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 163


>gi|308199027|dbj|BAJ22648.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199033|dbj|BAJ22651.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199049|dbj|BAJ22659.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|194293769|gb|ACF39979.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 310

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 167/311 (53%), Positives = 229/311 (73%), Gaps = 1/311 (0%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+L
Sbjct: 1   NFGSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLL 60

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           VNG  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++
Sbjct: 61  VNGSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKS 120

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
           GI+ AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  
Sbjct: 121 GIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITG 179

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I+DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL    P+   L 
Sbjct: 180 ISDLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNHPQILNLK 239

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L  ++  +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+ 
Sbjct: 240 QVLVHYINLQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRRSKTSEIAKN 299

Query: 416 ELMQRSWNASD 426
            L++R   +  
Sbjct: 300 TLIERFSLSEK 310


>gi|308072558|dbj|BAJ21896.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072566|dbj|BAJ21900.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072568|dbj|BAJ21901.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198969|dbj|BAJ22619.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198977|dbj|BAJ22623.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198981|dbj|BAJ22625.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198983|dbj|BAJ22626.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199001|dbj|BAJ22635.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199017|dbj|BAJ22643.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199021|dbj|BAJ22645.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199025|dbj|BAJ22647.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|259014742|gb|ACV88661.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 173

 Score =  356 bits (913), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 107/173 (61%), Positives = 135/173 (78%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD
Sbjct: 1   DVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  FSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           P VL ARYPN+LVNG  GIAVGMAT+IP HNL EV+D  V +IDNP+  +D L
Sbjct: 121 PSVLPARYPNLLVNGSNGIAVGMATSIPPHNLAEVIDATVYLIDNPECSVDDL 173


>gi|308072574|dbj|BAJ21904.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308072576|dbj|BAJ21905.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198973|dbj|BAJ22621.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198987|dbj|BAJ22628.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198993|dbj|BAJ22631.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198995|dbj|BAJ22632.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198997|dbj|BAJ22633.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308198999|dbj|BAJ22634.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199013|dbj|BAJ22641.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199047|dbj|BAJ22658.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDT 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|29602635|gb|AAO85704.1| GyrA [Campylobacter jejuni]
          Length = 178

 Score =  356 bits (912), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 107/178 (60%), Positives = 133/178 (74%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK
Sbjct: 1   SDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVK 60

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE 
Sbjct: 61  SARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEA 120

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP
Sbjct: 121 KMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIP 178


>gi|308199053|dbj|BAJ22661.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  356 bits (912), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|308199029|dbj|BAJ22649.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199031|dbj|BAJ22650.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 181

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 108/181 (59%), Positives = 137/181 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 D 212
            
Sbjct: 181 S 181


>gi|21327935|dbj|BAC00773.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 199

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 101/199 (50%), Positives = 139/199 (69%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +S+ D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   +K + K A+  
Sbjct: 1   LSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   
Sbjct: 61  GDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLL 120

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  LL D+ K+TV F PNYD +  EP+VL +R+PN+LVNG  GI+ G AT+IP HNL EV
Sbjct: 121 AEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIPPHNLAEV 180

Query: 199 VDGCVAVIDNPDIDLDALM 217
           +   +  IDNPDI ++ LM
Sbjct: 181 IQATLKYIDNPDITVNQLM 199


>gi|308199003|dbj|BAJ22636.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199019|dbj|BAJ22644.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 183

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 109/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFIPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|120406840|ref|YP_956669.1| DNA gyrase/topoisomerase IV subunit A [Mycobacterium vanbaalenii
           PYR-1]
 gi|119959658|gb|ABM16663.1| DNA topoisomerase IV subunit A [Mycobacterium vanbaalenii PYR-1]
          Length = 714

 Score =  355 bits (910), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 203/786 (25%), Positives = 324/786 (41%), Gaps = 87/786 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT   +   E+    +   S  D      LT+A+  +  RAIP   DGLKP  RR+L+ M
Sbjct: 1   MT-ATLDVPEQNPDLVLDQSADDYWNQYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQM 59

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
               +    K  K ++I   V G  HPHG A++Y A A MA ++  R+ +I+GQG F  +
Sbjct: 60  HDSKLLPGNKPQKSSKICSAVTGNLHPHGGASMYGAAALMAAEF-QRVKVIDGQGAFPRI 118

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD PAA+RYTE RL      L  +L    V   P +DG + EP  L AR+P +L NG  
Sbjct: 119 QGDIPAADRYTEMRLSAPGAALTAELDNHAVPMVPTFDGEWTEPTWLPARWPVLLCNGAV 178

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIA G AT +P HN  EV+  C A++  P++  D L+++I GPD+  GA ++G TG++  
Sbjct: 179 GIAEGWATKVPAHNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGATVVGETGLREY 238

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
             TGRG   +RG   ++     +  IV TE+P  V    + ++I  LV    +  +AD+ 
Sbjct: 239 ITTGRGQFTVRGTVSVD----GKNCIV-TELPPGVASNTVQDRIRALVESGELSGVADMS 293

Query: 301 DESD-RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGIL 358
           D +D R G R+V+  KRG SA+ I  QL   T L+S F+ ++VAL+  + P  +++  ++
Sbjct: 294 DLTDRRNGLRIVVTAKRGHSAEQIREQLLALTPLESTFAASLVALDENRVPRWWSVRELI 353

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AF+  R+ VVVRR++Y L K   R H++ GL     ++D  V +IR S   + AR+ L 
Sbjct: 354 SAFLHLRDSVVVRRSEYRLEKVTARRHLVAGLMTIHLDIDAAVAVIRGSETVDEARQGLQ 413

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +R                            +   Q   +L L+L RLT L   +++ E  
Sbjct: 414 ER--------------------------FGIDAEQADYVLALQLRRLTKLDVIELQAEAE 447

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RRTRIVEGLLDMEDEDCIVR 535
            L  E  E  +++++      +I +EL+        P   RRT +      +        
Sbjct: 448 KLDAEFAELTELVANPDARRKVIDEELVETAKLFKGPEFDRRTVLDFDATPVS---AGAD 504

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
           ED                          + +     R +D            S     + 
Sbjct: 505 ED-----------------------GPRERKVNAAWRLDDRGVF------SDSHGDLLTS 535

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G  +          +        I  + +                      ++   T+ G
Sbjct: 536 GLGWAVWTDGRVKFTTGNGLPFKIRDIPVAPDITGLLCSGVLA-----PGHHLALVTRRG 590

Query: 656 NVRRNKLSDFIQINR--SGKIAMKLDSRDEI--LSVET---CTQENDILLTTKLGQCVRF 708
            + R   +         +G   +KL + D    +       C     +L  ++    V  
Sbjct: 591 KILRIDPAAVNPQGAAGNGVAGVKLAAGDPEDAVIAALPVSCANGEALLSISEKSWKVT- 649

Query: 709 PISAIRVFAGRNSVGVRGIS--LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            ++ I    GR   GV G    +   D V++  I         + +       A  +   
Sbjct: 650 EVADI-PVKGRGGAGV-GFHPFVKGEDAVLAATISATGYVRGKKAVRADNRAKASIKGSG 707

Query: 767 GDTEEI 772
            D    
Sbjct: 708 VDVTPA 713



 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 3/123 (2%)

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
              R+       +     D  V  +I+   C  +      +  V+ +G   R        
Sbjct: 543 TDGRVKFTTGNGLPFKIRDIPVAPDITGLLCSGVLAPGHHLALVTRRGKILRIDPAAVNP 602

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVN--DNDQIILVSDKGTLIRVPVNEIRIASRAT 877
              +G G+    ++  +   A++A  PV+  + + ++ +S+K   +   V +I +  R  
Sbjct: 603 QGAAGNGVAGVKLAAGDPEDAVIAALPVSCANGEALLSISEKSWKV-TEVADIPVKGRGG 661

Query: 878 KGV 880
            GV
Sbjct: 662 AGV 664



 Score = 42.1 bits (97), Expect = 0.42,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 25/157 (15%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             + + L T+ G+ +R   +A+    G    GV G+ LA GD           +      
Sbjct: 579 PGHHLALVTRRGKILRIDPAAVNP-QGAAGNGVAGVKLAAGD----------PEDAVIAA 627

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL--TVSEKGFG 809
           +            IS  + ++T + +        +          E  +L  T+S  G+ 
Sbjct: 628 LPVSCANGEALLSISEKSWKVTEVADIPVKGRGGAGVGFHPFVKGEDAVLAATISATGYV 687

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFP 846
                       R  K +RA + +K +  G+ V V P
Sbjct: 688 ------------RGKKAVRADNRAKASIKGSGVDVTP 712


>gi|89891249|ref|ZP_01202756.1| topoisomerase IV, subunit A [Flavobacteria bacterium BBFL7]
 gi|89516561|gb|EAS19221.1| topoisomerase IV,  subunit  A [Flavobacteria bacterium BBFL7]
          Length = 894

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 168/816 (20%), Positives = 310/816 (37%), Gaps = 111/816 (13%)

Query: 1   MTEHIISSDEEEEKGITS-----VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M+E     +   +  I         IT   +  +L YA  VIL RA+P + DG KPV RR
Sbjct: 1   MSEENEELESINDGEIQEPTESITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I+  M  +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + +LI+ QG
Sbjct: 61  IMQSMKDLD---DGRYNKVANIVGHAM-QYHPHGDASISDAMVQIGQ----KDMLIDMQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GDP AA RY E RL K A  +L        +++ +YDG  +EPV L  ++P +
Sbjct: 113 NWGNIFTGDPAAASRYIEARLSKFALEIL--FNPKITEWQSSYDGRRKEPVNLPVKFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T +  HN  E++D  +  +      +         PDFPTG  I   
Sbjct: 171 LAQGAEGIAVGLSTKVLPHNFIELIDASIKHLQGKRFTIY--------PDFPTGGEID-- 220

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
                 Y  G     +R  + +   + D+  I++TEIPY  N +++++ I  L   ++  
Sbjct: 221 ---VTNYNDGLRGGKVRVRAKM--HAPDKNTIIITEIPYSTNTSSLIDSI--LKANEKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      ++I L  G S D  ++ LY +T+ +S  S     +   KP    +
Sbjct: 274 IKIKKIEDNTAADVEIMIHLHSGISPDKTMDALYAFTNCESSISPLGCVIEDNKPLFVGV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       +++ +  +  L++  ++ H      I +   + + R I      +   
Sbjct: 334 TEMLRRSADHTVDLLKQELEIQLDEVEEQWHFASLERIFIE--NRIYRDIEEEETWD--- 388

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                    A+  K L   I      I  D    L+E+        R+ R++    D  +
Sbjct: 389 ------GVIAAIDKGLKPHIGHLKRAITVDDITRLTEI--------RIKRISKFDIDKAQ 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            ++++L   I +    L     L+        S+K      R  +               
Sbjct: 435 QKIDALEERIAQLKHHL---EHLIEYAIDYFKSLKKNYGEGRERKTEIKTF--------- 482

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +D+V T        +V +   +      +G  G  ++ +++VTD    +    ++ F+ 
Sbjct: 483 -DDIVAT--------KVVMRNTKLYVNRAEGFVGTALKRDEYVTD---CADIDDIIVFTK 530

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +   KV      S    GK +I++    + ++ T       D  S  +         
Sbjct: 531 DGTMMVTKVD-----SKTFVGKDIIHVAVFKKKDKRTIYNAIYRDGKSGPS--------- 576

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
             V+R  ++   +              D+   +    +   +   +          + + 
Sbjct: 577 -YVKRFAVTSVTR--------------DKAYPMGKADKGTQVHYFSANPNG----EAEVV 617

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R    ++   L        + I   A          +K +  +   +S        
Sbjct: 618 TINLRQQGSIK--KLKWDLDFSDILIKGRASRGNQVTKYNIKKVELKEEGVSTLKPRKIW 675

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
             +                   E  +L +++KG  K
Sbjct: 676 FDDTVQRLNVDGRGELLGEFRGEDRLLIINQKGIVK 711


>gi|261414926|ref|YP_003248609.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371382|gb|ACX74127.1| DNA topoisomerase (ATP-hydrolyzing) [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325658|gb|ADL24859.1| putative DNA topoisomerase IV, A subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 846

 Score =  354 bits (909), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 159/738 (21%), Positives = 289/738 (39%), Gaps = 106/738 (14%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +       +L YA  VIL RA+P   DGLKPV RRIL  M +     + +Y K A I G 
Sbjct: 18  LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHG+A+I DAL  + Q    + LLI+ QGN+G+   GD  AA RY E RL   A
Sbjct: 75  TMA-YHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             ++     +T ++ P+YDG  +EPV L  ++P +L  G  GIAVG++T+I  HN  E+ 
Sbjct: 130 VDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +A +      L         PDF TG +I       + Y  G+    ++  + IE  
Sbjct: 188 EASIACLRGKKFTLY--------PDFFTGGIID-----VSDYNDGQRGGKVKVRAKIE-- 232

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + + + EIPY     +++E I +   +K  + I  + D + + G  +++ L+ G  
Sbjct: 233 KVDNKTLAIREIPYGTTTVSLIESIVK-ANDKGKIKIKHVDDNTSQ-GVEILVHLQPGTD 290

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             V ++ LY +T  +   S     +    P+   +  ILK       +++       L  
Sbjct: 291 PQVAIDALYAFTDCEKSLSPCTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANELKH 350

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             D+ H+     I +    EV  +I+ + + E   R + +                    
Sbjct: 351 LEDKWHMTTLEKIFIE--KEVYEVIKKAKDREQIIRLVREGLTP---------------- 392

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            +       +++ +   ++E+ + R++   R+     L  L   I +C     ++  ++ 
Sbjct: 393 YLKRLHRQTVTDEEIGKLIEIPIRRISHYDREKADQLLQELEENIAKCKY---NQEHIID 449

Query: 500 IIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                  ++  +      RRT+I E          +  + + V                 
Sbjct: 450 YAVNHFKNILKKYGEGKERRTQIAEFGKVNAVHVALANQKLYV----------------- 492

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
             R+ G   +G+          LF VS +  ++ F + G     KV          +   
Sbjct: 493 -NRKEGFVGTGMKK-----EEYLFDVSEYDDLIVFKADGSFKVVKVSD--------KDFV 538

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
             +I+ + +  +      +        + Y         ++R  +              K
Sbjct: 539 GKDIILVEKFNKDDERHIYNVIHQDGKDGY-------AYIKRFNVGGVT--RDKDYYMGK 589

Query: 678 LDSRDEILSVETCTQEN----DILLTTKLGQCVRFPI--SAIRVFAGRNSVG-------V 724
                +IL + +         +++L  +    + F +  S +    GR ++G       V
Sbjct: 590 NKPGSKILYMSSNMNGEAEVVEVILKPRPRIKLNFEVDFSEV-EVKGRGAIGNIVSKYPV 648

Query: 725 RGI-SLAKGDQVISMAIV 741
           + +  L KG   +   ++
Sbjct: 649 KTVKRLRKGVSTLGARVL 666


>gi|213419120|ref|ZP_03352186.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 219

 Score =  354 bits (908), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 101/203 (49%), Positives = 142/203 (69%), Gaps = 3/203 (1%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR
Sbjct: 18  ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSAR 77

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 78  TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 136

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K A  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HN
Sbjct: 137 LSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 196

Query: 195 LGEVVDGCVAVIDNPDIDLDALM 217
           L EV    + +I+ P   LD L+
Sbjct: 197 LREVAKAAITLIEQPKTTLDQLL 219


>gi|308198975|dbj|BAJ22622.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 182

 Score =  354 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 108/182 (59%), Positives = 138/182 (75%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ 
Sbjct: 1   YSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+Y+AL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTV
Sbjct: 61  AVYNALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           DF PNYDGS  EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++D+ D 
Sbjct: 121 DFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDA 180

Query: 212 DL 213
            L
Sbjct: 181 SL 182


>gi|300777684|ref|ZP_07087542.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
 gi|300503194|gb|EFK34334.1| DNA topoisomerase 4 subunit A [Chryseobacterium gleum ATCC 35910]
          Length = 863

 Score =  354 bits (907), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 170/819 (20%), Positives = 296/819 (36%), Gaps = 117/819 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT    S + E  K +     +   ++ +L YA  VIL RAIP + DGLKPV RRI+  M
Sbjct: 1   MTTEEYSHEGESLKKV-----SGLYKDWFLDYASYVILDRAIPSIYDGLKPVQRRIMHSM 55

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 56  REL---EDGRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNI 107

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL   A  ++      T ++  +YDG   EP+ L  ++P +L  G 
Sbjct: 108 YTGDSAAAARYIEARLTPFALEVV--FNPKTTEWTKSYDGRNNEPIDLPVKFPLLLAQGV 165

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GI VG++T I  HN  E+++  VA +     +L         PDF T   +       +
Sbjct: 166 EGIGVGLSTKILPHNFNELINASVAYLKGKKFELY--------PDFLTAGYLD-----VS 212

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  T  D+  +V++E+PY      +++ I  L   ++       
Sbjct: 213 EYNDGHRGGKVRARAKI--TQTDKHTLVISELPYSKTTTDLIDSI--LKANEKGKIKIKK 268

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      ++I +    S D  ++ LY +T  Q   S N   + G KP    +  ILK
Sbjct: 269 IEDNTSDKVEILIHIHNDVSPDKTIDALYAFTDCQVTISPNACVIVGDKPMFMNVSEILK 328

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                   ++ +  +  L++ ++  H      I +   + +   I      E        
Sbjct: 329 MNTDHTVSLLKKELEIELHELQESWHFSSLERIFIE--NRIYHDIEEVKTWE-------- 378

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                    D++  ID             ++E     + E+R+ R++    D  +  + S
Sbjct: 379 ---------DVLKTIDAGLKPHTKHLLRAVTEEDILKLTEIRIKRISRFDLDKFKENIAS 429

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRED 537
           L  +I++      +   L+       L+++ +   D  RRT +         +  +  E 
Sbjct: 430 LEGKIEQVKY---NLENLIAYAIDYYLNIQKKYGKDKQRRTELRIFDTIDATKVAVANE- 485

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
                              +      +G  G  ++ +     LF  S    ++ F   G 
Sbjct: 486 -------------------KFYANFEEGFIGTSLKKDQ---YLFDCSDIDDIITFRKDGS 523

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +   KV               I  +++ +     T+      E      Y+   +  G  
Sbjct: 524 MKVVKVEAKTFIGKD------ILHVAVWKKNDKRTVYNMIYREGREGPYYMKRFSVTGVT 577

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSV-ETCTQENDILLTTKLGQCVRFPISAIRVF 716
           R            S  +    +   E  +V         I    K    + F   AI   
Sbjct: 578 RNTDYPLASDKKGSETLYFSANPNGEAETVTVLLKPNPRIR---KNKMEINFSDLAI--- 631

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR+S G                               +K +  +   +S          
Sbjct: 632 KGRDSKG------------------------NLVTKYAVKKVDLKEEGVSTLAPRKIWFD 667

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           +        +          +  ILT++  G  K  S  
Sbjct: 668 DTVRRLNADARGTLLGSFKGDDKILTINTNGEVKLVSFD 706


>gi|118566971|gb|ABL01796.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|325954945|ref|YP_004238605.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
 gi|323437563|gb|ADX68027.1| DNA topoisomerase (ATP-hydrolyzing) [Weeksella virosa DSM 16922]
          Length = 847

 Score =  353 bits (905), Expect = 9e-95,   Method: Composition-based stats.
 Identities = 172/795 (21%), Positives = 300/795 (37%), Gaps = 112/795 (14%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           +E + I    I+   Q  +L YA  VIL RAIP + DGLKPV RRIL  M ++    + +
Sbjct: 4   QEGESIKK--ISGMYQEWFLDYASYVILERAIPSIYDGLKPVQRRILHSMREL---EDGR 58

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAER 129
           Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA R
Sbjct: 59  YNKVANIVGNTM-KYHPHGDASITDAIVQIGQ----KDLLIDTQGNWGNILTGDRAAAAR 113

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           Y E RL K A  ++      T  ++P+YDG  +EP+ L  ++P +L  G  GIAVG++T 
Sbjct: 114 YIEARLTKFALEVVY--NPKTTHWQPSYDGRNKEPIDLPVKFPLLLAQGVEGIAVGLSTK 171

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN  E++D  +A +      L         PDF TG  I         Y  G     
Sbjct: 172 ILPHNFIELIDASIAYLRGKKFTLY--------PDFQTGGYIE-----VADYNDGMRGGK 218

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R  + I  +  D+  + ++EIP+     ++++ I  L    +        +++      
Sbjct: 219 VRIRAKI--SQVDKTTLKISEIPFSTTTGSLIDSI--LKANDKGKIKIRKIEDNTAADVE 274

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           ++I L+ G S D  ++ LY +T  +   S N   ++  KPE  ++  ILK       +++
Sbjct: 275 ILIHLQTGTSPDKTIDALYAFTDCEVSLSPNACVIDEQKPEFLSVSEILKRNTDNTVQLL 334

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            R  +  L++ +++ H      I +   + +   I      E                  
Sbjct: 335 KRELEISLDELQEQWHFSSLERIFIE--NRIYHQIEEEETWE-----------------G 375

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +I+ ID       S     ++E     + E+R+ R++    D     + SL  +I E   
Sbjct: 376 VIETIDKGLKPFTSHLLRAVTEEDIVKLTEIRIKRISRFDLDKADQHILSLEDKIAEVKH 435

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            L++   L+         +K +      R+T I    +                      
Sbjct: 436 HLAN---LIDYSIAYFKELKTKYGAGKERKTEIRTFDIID-------------------- 472

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
             +V ++  R      +G  G  +R +     LF  S    ++ F   G +   KV    
Sbjct: 473 ASKVAVANTRFYVDRTEGFIGTSLRKD---EFLFECSDIDDIIIFRRDGVMMVTKV---- 525

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                             + +               N+      T +  + R+  +    
Sbjct: 526 ------------------EAKTFVGKGILHVGVWRRNDKR----TIYNMIYRDGKNGPAY 563

Query: 668 INRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             R    A+    RD+  ++ T  + +++L  +          + +     +     R  
Sbjct: 564 QKRFAVTAIT---RDKEYNLTTGNKGSEVLYFSANPNG----EAEVVSVILKTHQ--RLK 614

Query: 728 SLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
            L        + +   A          +K +  ++  +S          +          
Sbjct: 615 KLKFDIDFADLIVKGRASKGNLVTKYPIKKVELKQEGVSTLAPRKIWFDDAVKRLNADER 674

Query: 788 ERCQELKLKEQFILT 802
            R       E  ILT
Sbjct: 675 GRFLGDFKGEDRILT 689


>gi|118566965|gb|ABL01793.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|38677892|emb|CAE30286.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 225

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 142/224 (63%), Positives = 180/224 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
             +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESD
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESD 225


>gi|118566973|gb|ABL01797.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  352 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 131/163 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|61844861|emb|CAG44506.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844863|emb|CAG44507.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070001]
 gi|61844867|emb|CAG44508.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844869|emb|CAG44509.1| DNA gyrase subunit A [Mycobacterium canettii]
 gi|61844873|emb|CAG44510.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070002]
 gi|61844875|emb|CAG44511.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070003]
 gi|61844877|emb|CAG44512.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070005]
 gi|61844881|emb|CAG44513.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 19980863]
 gi|61844883|emb|CAG44514.1| DNA gyrase subunit A [Mycobacterium sp. CIPT 140070007]
          Length = 257

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 136/257 (52%), Positives = 175/257 (68%), Gaps = 5/257 (1%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE R
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNIP HN
Sbjct: 61  LTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHN 120

Query: 195 LGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           L E+ D           + +  L A+M  ++GPDFPT  +I+G  G  +AY TGRGSI +
Sbjct: 121 LRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRM 180

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYR 309
           RGV  +E+ S  R  +V+TE+PYQVN    +  IAE VR+ ++  I+++ D+ SDR G R
Sbjct: 181 RGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLR 240

Query: 310 VVIELKRGASADVILNQ 326
           +VIE+KR A A V++N 
Sbjct: 241 IVIEIKRDAVAKVVINN 257


>gi|298104538|gb|ADI55009.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 160

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 98/160 (61%), Positives = 128/160 (80%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL 
Sbjct: 61  HGDIAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLD 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           K+TVD+ PNYDG+   P V+  + P +LVNG  GIAVGMA
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPTLLVNGSSGIAVGMA 160


>gi|118566967|gb|ABL01794.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|118566969|gb|ABL01795.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 100/163 (61%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|38677890|emb|CAE30285.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 224

 Score =  351 bits (901), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 140/223 (62%), Positives = 179/223 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
             +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 224


>gi|118566975|gb|ABL01798.1| unknown [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 163

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 99/163 (60%), Positives = 130/163 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 163


>gi|260062970|ref|YP_003196050.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
 gi|88784538|gb|EAR15708.1| DNA topoisomerase IV subunit A [Robiginitalea biformata HTCC2501]
          Length = 907

 Score =  351 bits (900), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 165/813 (20%), Positives = 305/813 (37%), Gaps = 108/813 (13%)

Query: 1   MTEHIISSDEEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E+   +D  +++        +T   ++ +L YA  VIL RA+P + DG KPV RRI+ 
Sbjct: 1   MEENAPPNDPNQQEAEQEALTRVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            + +M    + +Y K A + G+ M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G
Sbjct: 61  ALKEMD---DGRYNKVANVVGQTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++  GD  AA RY E RL K A  ++        +++ +YDG  +EPV L  ++P +L  
Sbjct: 113 NILTGDGAAASRYIEARLSKFALEVV--FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVG++T I  HN  E++D  +  +      L         PDFPT  +I      
Sbjct: 171 GAEGIAVGLSTKILPHNFIELIDASIKHLQGKRFKLY--------PDFPTAGIID----- 217

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  G     +R  + I     D+  +V++EIPY  N +++++ I  L    +     
Sbjct: 218 IGNYNDGERGGKVRVRARI--AQQDKNTLVISEIPYGTNTSSLIDSI--LKANDKGKIKI 273

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              +++      +++ L  G S D  ++ LY +T+ ++  S     +   KP    +  +
Sbjct: 274 KKIEDNTAAEVEILVHLPSGISPDKTIDALYAFTACETSISPLGCIIEDNKPVFMGVSEM 333

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L+       E++    + LL + +++ H      I +   + + R I      E      
Sbjct: 334 LRRSTDHTVELLQAELEILLGELQEQWHAASLERIFIE--NRIYRDIEEEETWE------ 385

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                       +I  I              ++E     + E+R+ R++    D  +  L
Sbjct: 386 -----------GVIAAIGKGLKPHTGHLRREVTEEDIVRLTEIRIKRISRFDLDKAQEHL 434

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
           ++L   I E    L   + L          +K      R            +       +
Sbjct: 435 DNLEKRIAETKHHL---AHLTDYAIDYFRELKKNFGAGR--------ERKSEIRVFDEIE 483

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V     ++   L V R +   G          +         S    ++ F+  G 
Sbjct: 484 ATKVV-----IRNTKLYVNREEGFIGTSLRKDEYVTD--------CSDIDDIIVFTKSGQ 530

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +   +V      S    GK +I++    + ++ TT     +D     +           V
Sbjct: 531 MMITRVD-----SKTFVGKNIIHVAVYKKKDKRTTYNMIYKDGRGGPS----------YV 575

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  ++ F +              D++  + T   ++++L  T          + +    
Sbjct: 576 KRFNVTAFTR--------------DKLYDLTTGKAQSEVLYFTANPNG----EAEVVTVN 617

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R S  ++   L        + I              +K +  + + +S           
Sbjct: 618 LRQSGSIK--KLKWDLDFADVMIKGRNAKGNIVTKYPVKRIELKEKGLSTLKPRKIWFDE 675

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                              E  +L V++KG  K
Sbjct: 676 TVQRLNVDGRGELLGQFTPEDRLLIVNQKGDVK 708


>gi|295394180|gb|ADG03701.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 175

 Score =  351 bits (900), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 140/175 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDVTTRELMEV 175


>gi|295394170|gb|ADG03696.1| DNA gyrase subunit A [Streptococcus parasanguinis]
          Length = 175

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFADNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLMMDNPEVTTRELMEV 175


>gi|295394172|gb|ADG03697.1| DNA gyrase subunit A [Streptococcus pneumoniae]
 gi|295394174|gb|ADG03698.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 175

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394164|gb|ADG03693.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|295394168|gb|ADG03695.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
          Length = 175

 Score =  349 bits (896), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394176|gb|ADG03699.1| DNA gyrase subunit A [Streptococcus salivarius]
          Length = 175

 Score =  349 bits (896), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 105/175 (60%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPV RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVQRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L DL K+TVDF+ NYDGS +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDLNKNTVDFQDNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R PN+LVNG  GIAVGMATNIP HNL E +D    ++DNP++    LME+
Sbjct: 121 IVLPSRIPNLLVNGATGIAVGMATNIPPHNLAETIDAVKLMMDNPEVTTRELMEV 175


>gi|325279767|ref|YP_004252309.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
 gi|324311576|gb|ADY32129.1| DNA topoisomerase (ATP-hydrolyzing) [Odoribacter splanchnicus DSM
           20712]
          Length = 931

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 178/812 (21%), Positives = 316/812 (38%), Gaps = 118/812 (14%)

Query: 5   IISSDEEEEKGITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
           I+    EE   I S+   D M Q  +L YA  VIL RA+P + DGLKPV RRIL  M ++
Sbjct: 62  IMEHSGEESGKIRSIQHLDGMYQKWFLDYASYVILERAVPYVNDGLKPVQRRILHSMREL 121

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A I G  M KYHPHG+A+I DAL ++ Q    + LLI+ QGN+G++  G
Sbjct: 122 D---DGRYNKVANIIGNTM-KYHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTG 173

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E RL K A  ++      T +++P+YDG  +EP+ L  ++P +L  G  GI
Sbjct: 174 DGAAAPRYIEARLSKFALEVV--FNPKTTNWKPSYDGRNREPITLPIKFPLLLAQGVEGI 231

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG+A+ I  HN  E++D C+A + + D         +  PDFPTG +I       + Y 
Sbjct: 232 AVGLASKILPHNFNELIDACIAHLKHED--------FVLYPDFPTGGMID-----VSKYC 278

Query: 243 TGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
            G   G++ IR      +   +   + +TEIP+    +++++ I +    ++        
Sbjct: 279 DGMRGGNVKIRAKI---EKDNNNRALKITEIPFGRTTSSLIDSIIKA--NEKGKIKIKKI 333

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++  +   ++I+L  G S+D  ++ LY +T  +   S N   +   KP    +  IL+ 
Sbjct: 334 DDNTARDVEILIQLAPGVSSDKTIDALYAFTDCELSISPNSCVIEEEKPRFMPISDILRQ 393

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                  ++    +  L +  +  H +    I +       +    S   E     + +R
Sbjct: 394 SADDTVALLKLELEIRLKELLEDLHYVSLERIFIEERIYKDKQFEESETMELVIAHVHRR 453

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                  +    +++   + +LE+++ R+     ++  + + SL
Sbjct: 454 LQP-----------------FLPELYREVTDDDVKKLLEIKMKRILKFSSEEADHYIRSL 496

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDM 538
             EI     +  +   ++         +K +      R+T I         +  I  E  
Sbjct: 497 NEEIA---VVKHNIEHIIPYSIAYYERIKAKYGKGRERKTEIRNFENIEAAKVVIANE-- 551

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                             +      +G  G  ++ +     +   S    V+ F   G  
Sbjct: 552 ------------------KLYINREEGFIGTALKKD---EFICECSDMDDVIVFKKDGTY 590

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  KV               +  +++ +     TI      +  +   YV      G V 
Sbjct: 591 YVTKVADKIFVGKD------VQYVNVFKKNDKRTIYNVVYRDGKYGASYVKRFNVTG-VT 643

Query: 659 RNKLSDFIQINRSGKI---AMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
           R+K+ +  +     +I   +   +   E++ V    +       +       +  +A+  
Sbjct: 644 RDKVYNLTKGTAGSRILHFSANPNGEAEVIKVCLKPKP------SIKKLVFEYDFAAL-S 696

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
             GR+S G    +L K D                     +  +S  ++ +S        L
Sbjct: 697 IKGRDSQGN---TLTKND---------------------VHKISVVQKGVSTLGGCKIWL 732

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
             D       S  +       E  IL V++ G
Sbjct: 733 DEDVLRLNTDSRGKYLGEFQGEDRILVVNKNG 764


>gi|38677888|emb|CAE30284.1| DNA gyrase A subunit [Bacillus licheniformis]
          Length = 222

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 140/222 (63%), Positives = 178/222 (80%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  
Sbjct: 1   IGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISME 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG
Sbjct: 61  ILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDG 120

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS 
Sbjct: 121 VLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSS 180

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            +  I++TEIPYQVNKA ++EKIA+LVR+K+I  I DLRDES
Sbjct: 181 GKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDES 222


>gi|256422125|ref|YP_003122778.1| DNA topoisomerase IV subunit A [Chitinophaga pinensis DSM 2588]
 gi|256037033|gb|ACU60577.1| DNA topoisomerase (ATP-hydrolyzing) [Chitinophaga pinensis DSM
           2588]
          Length = 846

 Score =  349 bits (895), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 131/518 (25%), Positives = 235/518 (45%), Gaps = 52/518 (10%)

Query: 1   MTE-HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M++       +E  + I    + D  +N +L YA  VIL RA+P + DGLKPV RRIL  
Sbjct: 1   MSDIDNTQPADESLQNILH--LGDMYENWFLDYASYVILERAVPSVEDGLKPVQRRILHA 58

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M +M    + ++ K A + G  M ++HPHG+A+I DA+  + Q    + LLI+ QGN+G 
Sbjct: 59  MKEMD---DGRFNKVANVIGSTM-QFHPHGDASIGDAIVNLGQ----KDLLIDTQGNWGD 110

Query: 120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           V  GD  AA RY E RL K A  +       T  ++ +YDG   EP+ L  ++P +L  G
Sbjct: 111 VRTGDDAAAARYIEARLSKFALEV--GFNSKTTQWQLSYDGRKNEPLALPMKFPLLLAQG 168

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T I  HN  E+++  +  +     ++         PDFPTG +I       
Sbjct: 169 AEGIAVGLSTKILPHNFIELLEASIKYLKGKKFEI--------FPDFPTGGMID-----V 215

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y  GR    +R  +HIE+   D++ +++ ++PY V   A++E I +     +I     
Sbjct: 216 ANYNDGRRGGKVRVRAHIEE--KDKKTLLIKDVPYGVTTTALMESIVKANDNGKIKIKK- 272

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
              ++  +   + ++L  G S D+ ++ LY +T  +   S N   +   KP   T+  +L
Sbjct: 273 -VVDNTAKDVEIEVQLAPGISPDITIDALYAFTDCEISISPNACVIIDDKPRFLTVSELL 331

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           ++   F + ++ R  +  L++ +D+ H      I                     +    
Sbjct: 332 RSSADFTQALLKRELEIRLSELQDKWHYTSLEKIFFE------------------KGIYK 373

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
           +      D + +I  ID        +    ++      + E  + R+  L  +++  ++ 
Sbjct: 374 ELEQKHKDWEAVIAAIDKGFAPYKKNLKREITREDILKLTEKPVRRIYRLDINELNEQIK 433

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           S+  +IK+    L++   ++        ++  +    R
Sbjct: 434 SIEADIKDVKHDLAN---MVDFTVAYYENLLKKYGKGR 468


>gi|312889464|ref|ZP_07749016.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
 gi|311298016|gb|EFQ75133.1| DNA topoisomerase (ATP-hydrolyzing) [Mucilaginibacter paludis DSM
           18603]
          Length = 914

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 137/517 (26%), Positives = 230/517 (44%), Gaps = 50/517 (9%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E     D  +   I  +      +N +L YA  VIL RA+P + DGLKPV RRIL  +
Sbjct: 1   MSEEESQGDNNKLHNIIPLD--GLYENWFLDYASYVILDRAVPHIYDGLKPVQRRILHSL 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS- 119
            +M    + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + L+I+ QGN+G  
Sbjct: 59  KEMD---DGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQ----KNLMIDCQGNWGDP 110

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           V GD  AA RY E RL K A  +      DT  ++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 VTGDSAAAPRYIEARLSKFAIDV--AFNPDTTIWQSSYDGRNREPITLPVKFPLLLAQGA 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG+AT I  HN  E++D  +AV++    +L         PDFPTG +        +
Sbjct: 169 EGIAVGLATKILPHNFVELLDASIAVLNGIRPNLL--------PDFPTGGLAD-----AS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G+    +R  + I +   D++ +V+TE+P+      ++E +     +K  + I  +
Sbjct: 216 NYNEGQRGGKVRVRARIAE--RDKKTLVITEVPFSTTTGGLMESVVA-ANDKGKIKIKSI 272

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D + +    ++I L  G S DV ++ LY +T  +   S N   ++  KP   ++  +L 
Sbjct: 273 VDHTSK-NVEILINLAPGISPDVTIDALYAFTDCEVSISPNTCVIHDDKPRFMSVNDMLT 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                 +E++ +  +  LN+ +++      L I           I+       A      
Sbjct: 332 ESTYHTKELLKQELEIRLNELKEKIFFSSLLKIF----------IQQGMYKNPAYETSAN 381

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                  +  L +      Y               + +++  ++ +T         ++ +
Sbjct: 382 FEAVVEVLNGLFEPFFSQFYRTILAEDY-------KKLIDKPMSSITRFDVKKADEQMKT 434

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           L  EIKE    L     L          +KD+    R
Sbjct: 435 LENEIKEVNHHL---KHLNDYAIAWFQKLKDKYGKGR 468


>gi|295394166|gb|ADG03694.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 175

 Score =  349 bits (894), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 108/175 (61%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYDGS +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIAMEMLRDINKNTVDFADNYDGSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTRDLMEV 175


>gi|3510606|gb|AAC33552.1| gyrase subunit A [Chlamydia trachomatis]
          Length = 179

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 99/177 (55%), Positives = 129/177 (72%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
            +E+ I   ++ +EM+ SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K
Sbjct: 3   NKEEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVK 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + KCA+I G+  G YHPHG + IY  L RMAQDW++R  L++GQGNFGS+DGDP AA RY
Sbjct: 63  HRKCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           TE RL  +A FLL+DL KDTVD  PNYD +  EPVV  +++PN+L NG  GIAVGMA
Sbjct: 123 TEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMA 179


>gi|225012789|ref|ZP_03703223.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
 gi|225003063|gb|EEG41039.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacteria bacterium
           MS024-2A]
          Length = 865

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 158/810 (19%), Positives = 304/810 (37%), Gaps = 110/810 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E    +  E+    + V +T   ++ +L YA  VIL RA+P + DGLKPV RRIL  M
Sbjct: 1   MDEITDQTFPEDASNDSLVKVTGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRILHSM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 61  KDLD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQVGQ----KELLIDMQGNWGNI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  ++        D++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 LTGDSAAASRYIEARLSKFALEVV--FSPKVTDWQLSYDGRKKEPIHLPVKFPLLLAQGA 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E++   +  +    ID+         PDF TG VI        
Sbjct: 171 EGIAVGLSTKILPHNFNELLQASIQHLKGKKIDVY--------PDFQTGGVID-----VQ 217

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  T  D+  +V+ EIP+  N +++++ I  L   ++       
Sbjct: 218 NYNEGLRGGKVRVRAKI--TQQDKNTLVINEIPFSTNTSSLIDSI--LKANEKGKIKIKK 273

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      +++ L    S D +++ LY +T+ ++  S     +   KP    +  +LK
Sbjct: 274 IEDNTASEVEILVHLPNDISPDKMIDALYAFTACETSISPLGCLIIDNKPHFMGVNEMLK 333

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                  +++       L +  ++ H      I +   +++ R I  +   E        
Sbjct: 334 ISTDHTVQLLKLELDVQLLELENQWHYASLERIFIE--NKIYRDIEEASTWE-------- 383

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                    ++I  ID             + E     + E+R+ R++    D  + ++ +
Sbjct: 384 ---------EVIAFIDKGLKPHIEHLKRAVVEEDIVRLTEIRIKRISKFDLDKAQQKIEA 434

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRED 537
           L  +I E     ++ + L+    +    ++    T   R++ I         +  +  + 
Sbjct: 435 LEGDIAEVK---NNLAHLIDYAIRYFKHLRKTYGTDKERKSEIRIFDDVDAKKVVVRNQ- 490

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
                              R      +G  G  +R +     +   S    ++ F+  G 
Sbjct: 491 -------------------RLYMNREEGFIGTSLRKD---EFVCDCSDIDDIIVFTQEGK 528

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +   KV         ++     NIL     ++  T   +                    +
Sbjct: 529 MQVVKV--------DSKVFVGKNILHAAVFKKKDTRTIYNMVYQDGKGGTTF-------I 573

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +R  ++   +              D+   +      +++L  +          + I    
Sbjct: 574 KRFAVTGITR--------------DKEYDLTQGKAHSELLYFSANSNG----EAEIISIL 615

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            RN+  ++   L        + I   A          ++ +  + + +S          +
Sbjct: 616 LRNTGSIK--KLKWDLDFADLQIKGRASRGNTVTKYPIRKVELKEKGVSTLKPRKIWFDD 673

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKG 807
                              +  +L  +++G
Sbjct: 674 TIRRLNLEGRGELLGAFKGDDKLLIATQQG 703


>gi|289804388|ref|ZP_06535017.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 161

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 102/161 (63%), Positives = 127/161 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NY
Sbjct: 61  VRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           DG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 121 DGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 161


>gi|295394160|gb|ADG03691.1| DNA gyrase subunit A [Streptococcus infantis]
          Length = 175

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 138/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP++    LME+
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEV 175


>gi|295394154|gb|ADG03688.1| DNA gyrase subunit A [Streptococcus australis]
          Length = 175

 Score =  348 bits (892), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFTDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
            VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNPD+    LME+
Sbjct: 121 NVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLMMDNPDVTTRELMEV 175


>gi|317471525|ref|ZP_07930876.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
 gi|316901020|gb|EFV22983.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA]
          Length = 651

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 179/600 (29%), Positives = 305/600 (50%), Gaps = 34/600 (5%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           K+ VDF  N+D + +EP VL  R PN+L+NG  GIAVGM T+IP HNLGEVVD  +A ++
Sbjct: 36  KNVVDFISNFDETEKEPEVLPVRVPNLLINGAEGIAVGMTTSIPPHNLGEVVDAMIAYLE 95

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE--Q 265
           +  +  + L+  I+GPDFPTG +++ +  IK  Y  G G + +RG    E      E  +
Sbjct: 96  DESVANEDLLTYIQGPDFPTGGLVVNKKDIKTIYTEGSGKLKLRGKVVFEPGKKRGEKDK 155

Query: 266 IVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +V+TEIPY +  A + +    +  LV  K+  DIAD+ +ES ++G R+V+ELK+G   + 
Sbjct: 156 LVITEIPYTMIGANIGKFLSDVVNLVESKKTTDIADISNESSKEGIRIVLELKKGTDIER 215

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           + N LY+ T L+  F VNM+A+   +PE  +L  I+     F   +V R+ + LL+K  D
Sbjct: 216 LKNLLYKKTKLEDTFGVNMLAIVDGRPETLSLRDIIAHHTEFHYGLVKRKYQTLLSKLYD 275

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           +  V  GL  A   +D ++ I+R S N + A+  L +         ++ ++   SS ++ 
Sbjct: 276 QREVKEGLIKACDMIDLIIEILRGSKNLKEAKACLTKG--------EVGNIRFKSSESMI 327

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
               +  +E Q  AIL+LRL +L GL    +R E   +  +I E  DIL + + +  ++K
Sbjct: 328 EACKLSFTEKQAEAILDLRLGKLIGLEILALREEYEEIVAKIAEYEDILHNPASMQRVMK 387

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           Q+L+ +K E    RRT + +G   + +E+ +  E +   +   GY K    + Y+  +  
Sbjct: 388 QDLMKIKKEYQRERRTVVEDGAEAVFEEEPLKEEQVYFVMDRFGYAKTFDKATYQRNQEN 447

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                            +        +  F+  G +++ KV  +P G  + +G  + N+ 
Sbjct: 448 ASRD----------YKYIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLG 497

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
           + +  +     +   E  +  +   + FAT+ G ++    ++F  + +    A KL   D
Sbjct: 498 NYDSSDEAIIAVLAAEAMTHDS---LFFATEQGMLKIVSGTEFQ-VTKRTVSATKLSDGD 553

Query: 683 EILSVETCTQE------NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
            +LSV+    E      + ++L TK G  +RF +  +     + +VGVRGI L K D ++
Sbjct: 554 ALLSVKPLKTEGGLIKPDMVILETKEGVFLRFSLEEVPEKK-KGAVGVRGIKLNKDDILL 612



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 12/162 (7%)

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            ++            D  + +   +         D         +               
Sbjct: 454 YIVPCMNTDKICIFTDTGVMHQIKVLDIPAGKYKDKGTPIDNLGNYDSSDEAIIAVLAAE 513

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--- 850
            +    +   +E+G  K  S  +F+++ R          +K+++  AL++V P+      
Sbjct: 514 AMTHDSLFFATEQGMLKIVSGTEFQVTKR------TVSATKLSDGDALLSVKPLKTEGGL 567

Query: 851 ---DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              D +IL + +G  +R  + E+    +   GV      KD+
Sbjct: 568 IKPDMVILETKEGVFLRFSLEEVPEKKKGAVGVRGIKLNKDD 609



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 85/267 (31%), Gaps = 47/267 (17%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEN 694
              E+E            + G  +    + + +   +     K         +  C   +
Sbjct: 411 AVFEEEPLKEEQVYFVMDRFGYAKTFDKATYQRNQENASRDYKY--------IVPCMNTD 462

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQ-------VISMAIVLHADAD 747
            I + T  G   +  +  I     ++  G    +L   D        V++   + H    
Sbjct: 463 KICIFTDTGVMHQIKVLDIPAGKYKD-KGTPIDNLGNYDSSDEAIIAVLAAEAMTHDSLF 521

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           +      +K +S     ++  T   T L +  ++      +    L   +  IL  +++G
Sbjct: 522 FATEQGMLKIVSGTEFQVTKRTVSATKLSDGDALLSVKPLKTEGGLIKPDMVILE-TKEG 580

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL---------VSD 858
              R S  +     +   G+R   ++K                D I+L         ++ 
Sbjct: 581 VFLRFSLEEVPEKKKGAVGVRGIKLNK----------------DDILLHTYLMEADGITS 624

Query: 859 ---KGTLIRVPVNEIRIASRATKGVVI 882
              KG   R+  N++++A R TKG  I
Sbjct: 625 MDYKGK--RLDFNKLKLAKRDTKGSKI 649


>gi|89101241|ref|ZP_01174065.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89084047|gb|EAR63224.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 198

 Score =  347 bits (891), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 95/197 (48%), Positives = 129/197 (65%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           S     +    + + D + + +  Y+  +I  RA+PD+RDGLKPV RRIL+ M   G   
Sbjct: 2   SSASSAEKFRDLPLEDVLGDRFGRYSKYIIQDRALPDVRDGLKPVQRRILYAMHVEGNTN 61

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            K + K A+  G V+G YHPHG++++YDA+ RM+QDW +R  L+E  GN GS+DGDPPAA
Sbjct: 62  EKGFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQDWKVRNFLVEMHGNNGSIDGDPPAA 121

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL   +  LL D+ K TVDF PN+D +  EP VL A +PN+LVNG  GI+ G A
Sbjct: 122 MRYTEARLSAISSELLRDIEKHTVDFIPNFDDTSSEPTVLPAMFPNLLVNGSTGISAGYA 181

Query: 188 TNIPTHNLGEVVDGCVA 204
           T IP H+LGE++DG + 
Sbjct: 182 TEIPPHHLGEIIDGVIM 198


>gi|329124299|gb|AEB72027.1| DNA gyrase subunit A [Aeromonas sp. A1(2011)]
          Length = 158

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 97/158 (61%), Positives = 126/158 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY  YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYADYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL 
Sbjct: 61  HGDVAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLD 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           K+TVD+ PNYDG+   P V+  + PN+LVNG  GIAVG
Sbjct: 121 KETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVG 158


>gi|295394158|gb|ADG03690.1| DNA gyrase subunit A [Streptococcus gordonii]
          Length = 175

 Score =  347 bits (890), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 104/175 (59%), Positives = 136/175 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDFIDNYDANEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNL E +D    V+DNP+     +ME+
Sbjct: 121 IVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKLVMDNPEATTRDIMEV 175


>gi|295394152|gb|ADG03687.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 175

 Score =  347 bits (890), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD PAA+RYTE R+ K +  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPDVTTHDLMEV 175


>gi|261880504|ref|ZP_06006931.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
 gi|270332844|gb|EFA43630.1| DNA topoisomerase 4 subunit A [Prevotella bergensis DSM 17361]
          Length = 916

 Score =  347 bits (889), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 157/715 (21%), Positives = 268/715 (37%), Gaps = 100/715 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+PD+ DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 65  KNWFLDYASYVILERAVPDIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 120

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 121 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 175

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ +  HN  E+ D  ++
Sbjct: 176 -FNPKTTEWQQSYDGRNKEPVTLPVKFPLLLAQGAEGIAVGLSSKVLPHNFNELCDAAIS 234

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +L         PDFPTG  I       + Y  G+    +R  + IE    D +
Sbjct: 235 YLRGKEFELY--------PDFPTGGAID-----ISKYNDGQRGGTVRVRAKIE--KLDSK 279

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    A++ E I   + + +I     +      +   + ++L  G S+D  +
Sbjct: 280 TLVIREVPFTKTAASLQESITRAIEKGKIKARRVIDM--TARDVEIQVQLSPGISSDKTI 337

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   ++G KP   T+  +LK        ++         +     
Sbjct: 338 DALYAFTDCEINISPNCCVIDGNKPAFLTISDVLKHNADRTMGLLRTELLIRKGELE--- 394

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                L  A       +  I         R    ++   A   K ++  +D        D
Sbjct: 395 ---EMLFFAS------LERIFIEE-----RMYKEKKFEQAPSQKAVLAFLDSKFEPFKKD 440

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               + E     +LE+++ R+    +D     +     EI     I    + +  +    
Sbjct: 441 LIREIREDDYLRLLEIKMQRILKYNKDKADQLMKKTMAEI---KGIDHDLAHMTDVTIAW 497

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K+    D PR T I               E + +     G+V              
Sbjct: 498 YKHLKNTYGKDYPRLTEIRSFDTIDAATVVEANEKLYINR-QDGFVGTGL---------- 546

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                            +   S    ++ F   G     KV          +     NI+
Sbjct: 547 ------------KKHEFVCNCSDLDDIIIFYRDGKYKVMKVAD--------KIFVGKNII 586

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            +    +      +        N Y         ++R  ++   +         +     
Sbjct: 587 WVQVFNKNDKRTIYNAVYRDGKNGY-------SYIKRFNVTSMTRDREYDIT--QGKPGS 637

Query: 683 EILSVETC-TQENDILLTT--------KLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +L        E +I+  T        K    +    S ++   GR + G     
Sbjct: 638 RVLYFTANPNGEAEIIKVTLDPDPKKKKQNIFLEMDFSDVK-IKGRTAKGNILTK 691


>gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 623

 Score =  346 bits (888), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 189/619 (30%), Positives = 294/619 (47%), Gaps = 63/619 (10%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE +L + A  L++ L +D+VDFRP YDG+ +EP V+ +  PN+L NG  GIAVGMA
Sbjct: 1   MRYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           T+IP HNLGE+ D    +I  PD D+D L+  + GPDFPTG V++  +  I  AY TG+G
Sbjct: 61  TSIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S  +R    +EK S    QIV+TEIPYQV KA ++EKIAEL+ EK++  +AD+RDES   
Sbjct: 121 SFRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAE- 179

Query: 307 GYRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVAL-----NGYKPERFTLIGILKA 360
             R+V+E +     A++++ QL+R T L+S FS+NM  L         P    L  +L+A
Sbjct: 180 DIRLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRA 239

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           F+  R  V+ RRT++ L K   R  VL G     A+LD+V++IIRF+  P+         
Sbjct: 240 FLDHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEPK--------- 290

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                   +LI              T  LSEVQ  AIL +RL  L  L   +I+ E   L
Sbjct: 291 -------AELIK-------------TFKLSEVQAEAILNMRLRSLNKLQELEIKTEHAEL 330

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELD-----TPRRTRIVEGLL--DMEDEDCI 533
             E  +   +L+   R    I  +   ++           RRT + +      +  E  +
Sbjct: 331 SAEKADLEALLADEGRRWTTIAAQNAEIRKAFGGATALGKRRTELGDAPSAVVVPIEAYV 390

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
            RE + + +S  G++        RA +        +  ++ D +  L    T   +L F+
Sbjct: 391 EREAITMVLSEKGWI--------RALKGHSDSPDALKFKEGDQLGHLLKAWTTDKILVFA 442

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G  Y     +LP G  +  G+ L  ++ L     I  ++             ++ AT 
Sbjct: 443 TDGRFYTIGGDKLPSG--RGHGEPLRLMIDLAGDVDIAAVL------VHKPGRKLLVATN 494

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
                  + ++ +   R+GK+ +     ++        + + + +  +  + + F    I
Sbjct: 495 SDRGFVVEENEVLAQTRAGKMVLNCGDGEKAKFC-LPFEGDAVAVIGENRKLLVFMADEI 553

Query: 714 RVFAGRNSVGVRGISLAKG 732
            V       GV       G
Sbjct: 554 PVMT--RGRGVILQKYRDG 570


>gi|295394162|gb|ADG03692.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 175

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 106/175 (60%), Positives = 139/175 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD PAA+RYTE R+ K +  +L D+ K+TVDF  NYD S +EP
Sbjct: 61  SYRHMLVDGHGNFGSMDGDGPAAQRYTEARMSKISLEMLRDINKNTVDFADNYDSSEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL +R+PN+LVNG  GIAVGMATNIP HNLGE +D    ++DNPD+    LME+
Sbjct: 121 LVLPSRFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLIMDNPDVTTRDLMEV 175


>gi|190888720|gb|ACE95985.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888722|gb|ACE95986.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888724|gb|ACE95987.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888726|gb|ACE95988.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888728|gb|ACE95989.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888730|gb|ACE95990.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  346 bits (887), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|190888708|gb|ACE95979.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888718|gb|ACE95984.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 124/162 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|295394178|gb|ADG03700.1| DNA gyrase subunit A [Streptococcus sanguinis SK1]
          Length = 175

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 107/175 (61%), Positives = 136/175 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV   K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPEKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVD+  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           VVL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNPD     +ME+
Sbjct: 121 VVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPDATTRDIMEV 175


>gi|294054277|ref|YP_003547935.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613610|gb|ADE53765.1| DNA topoisomerase (ATP-hydrolyzing) [Coraliomargarita akajimensis
           DSM 45221]
          Length = 691

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 134/536 (25%), Positives = 225/536 (41%), Gaps = 52/536 (9%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
            ++S +E       +  + D     +L YA  VIL RA+P   DGLKPV RRIL  M ++
Sbjct: 25  ELLSDEEIFNLKTDTGHVDDMFSEWFLDYASYVILERAVPHANDGLKPVQRRILHSMREL 84

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G+   G
Sbjct: 85  ---EDGRYNKVANVIGNTM-KYHPHGDASICDAMVQLGQ----KDLLIDTQGNWGNTFTG 136

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E RL K A  ++      T ++  +YDG  +EP  L  ++P +L  G  GI
Sbjct: 137 DSAAAARYIEARLSKFALDVV--FNPKTTNWLASYDGRNKEPETLPVKFPLLLAQGVEGI 194

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG+A  I  HN  E++DGC++ +     ++         PDFPTG +        + Y 
Sbjct: 195 AVGLACKILPHNFIELIDGCISFLRKQTPEIV--------PDFPTGGIAD-----VSEYN 241

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G+    ++  + +E    +   I  TE+P+     ++++ I     +K  + I+ + D 
Sbjct: 242 NGKRGGRVKVRARMEARKKNLLAI--TELPFGKTTTSLIDSILS-ANDKGKIKISRVEDN 298

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +      ++I L  G+  +     LY +T  +   S N+  +   KP  F  + +L    
Sbjct: 299 TA-DKVEILIYLPSGSDPETAEQALYAFTDCEVSVSTNICVIENEKPHFFAAVDLLYLAT 357

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
               E++    +  L +  ++ H      I +     + R I      E           
Sbjct: 358 EKTRELLRMELEIQLAELEEKWHFSSLEKIFIE--KRIYRRIEEEETWE----------- 404

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  +I  +DD            ++      +LE+++ R++          + SL  
Sbjct: 405 ------GVIQTVDDGLKPYKKLFKREITRDDILRLLEIKIKRISKYDSFKADEFIQSLED 458

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRE 536
            I E      +   L     +    +K +      RRT +         E  I  E
Sbjct: 459 AIAETQ---KNLKYLTKYTIKWFNDLKKKYGKGRERRTELASFKKVAAHEVVIANE 511


>gi|190888706|gb|ACE95978.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888712|gb|ACE95981.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888714|gb|ACE95982.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 93/162 (57%), Positives = 123/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEP+VL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVG 162


>gi|295394156|gb|ADG03689.1| DNA gyrase subunit A [Streptococcus cristatus]
          Length = 175

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 105/175 (60%), Positives = 137/175 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ W
Sbjct: 1   VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           S R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVD+  NYD S +EP
Sbjct: 61  SYRYMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLRDINKNTVDYIDNYDASEREP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
           +VL AR+PN+LVNG  GIAVGMATNIP HNLGE +D    V+DNP+     +ME+
Sbjct: 121 MVLPARFPNLLVNGATGIAVGMATNIPPHNLGESIDAVKLVMDNPEATTRDIMEV 175


>gi|170676377|gb|ACB30376.1| DNA gyrase subunit A [Burkholderia pseudomallei]
 gi|170676383|gb|ACB30379.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  345 bits (885), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 126/157 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDTAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|319955665|ref|YP_004166932.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
 gi|319424325|gb|ADV51434.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga algicola DSM
           14237]
          Length = 886

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 155/808 (19%), Positives = 301/808 (37%), Gaps = 109/808 (13%)

Query: 7   SSDEEEEKGITSVSITDE---MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
             D +E +  T  S+T      ++ +L YA  VIL RA+P + DG KPV RRI+  + ++
Sbjct: 14  PQDNQENQENTQDSLTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEL 73

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DG 122
               + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  G
Sbjct: 74  D---DGRYNKVANVVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTG 125

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RY E RL K A  ++         ++ +YDG  +EP  L  ++P +L  G  GI
Sbjct: 126 DSAAASRYIEARLSKFALEVV--FSPKITAWQSSYDGRKKEPTNLPVKFPLLLAQGAEGI 183

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
           AVG++T +  HN  E++D  +  +      +         PDFPT  +I       + Y 
Sbjct: 184 AVGLSTKVLPHNFIELIDSSIKHLKGQKFTI--------FPDFPTSGIID-----VSNYN 230

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            G     IR  + I  +  D+  +V+ EIPY  N +++++ I  L   ++        ++
Sbjct: 231 DGIRGGKIRVRAKI--SQLDKSTLVINEIPYGTNTSSLIDSI--LKANEKGKIRVRKIED 286

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           +      ++I L  G S D  ++ LY +T+ +S  S     +   KP    +  +L+   
Sbjct: 287 NTAADVEILIHLPSGLSPDKTIDALYAFTACESSISPLGCIIEDNKPLFIGVTEMLQRST 346

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            +  E++    +  L +  ++ H      I +   + + R I      E           
Sbjct: 347 DYTVELLRAELEVQLRELEEQWHFASLERIFIE--NRIYRDIEEQETWE----------- 393

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  +I  IDD            ++E     + E+R+ R++    D  +  ++ L  
Sbjct: 394 ------GVIKAIDDGLKPYIKHLKRAVTEEDIARLTEIRIKRISKFDIDKAQQLIDGLEE 447

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +I E  + L   + ++        ++K +    R            +       +     
Sbjct: 448 KIAEVKNHL---AHIIEFAIDYFKNLKSKYGKDR--------ERKSEIRIFDDIEATKV- 495

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
                ++   L V R +   G                +   S    ++  +  G      
Sbjct: 496 ----AIRNTKLYVNREEGFLGTSL--------KRDEYVGDCSDIDDIIVMTKAG------ 537

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              + I    ++     NI+ +   ++      +                    ++R  +
Sbjct: 538 --EMMITKVDSKIFVGKNIIHVAIFKKKDKRTIYNMVYRDGKGGP-------SYIKRFYV 588

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
           +   +              D++  +   T  +D+L  ++         + +     R + 
Sbjct: 589 TGVTR--------------DKMYDLVNGTANSDVLYFSENPNG----EAEVIAVLLRQAG 630

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
            ++   L        + I   A          +K +  + + +S          +     
Sbjct: 631 SIK--KLKWDIDFADILIKGRASKGNIVTKYPIKRIELKEKGVSTLKPRKIWFDDVVRRL 688

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGK 810
              +          E  +L +++KGF K
Sbjct: 689 NVDARGELLGEFRGEDRLLVITQKGFVK 716


>gi|89101302|ref|ZP_01174113.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
 gi|89083983|gb|EAR63173.1| DNA topoisomerase IV subunit A [Bacillus sp. NRRL B-14911]
          Length = 610

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 205/684 (29%), Positives = 339/684 (49%), Gaps = 92/684 (13%)

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D  +D LME+I+GPDFPTG  I G  GIK AY TG+G I+IRG S +E   G R+QIV+T
Sbjct: 1   DCTVDELMEVIKGPDFPTGGTIQGAEGIKKAYETGKGKIIIRGKSEVEDIRGGRQQIVIT 60

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           EIP++VNKA +++KI EL  ++++  I+++RDE+DR G R+VIELK+ A A  +LN LY+
Sbjct: 61  EIPFEVNKANLVKKIDELKMDRKVEGISEVRDETDRTGLRIVIELKKDADAAGVLNYLYK 120

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            T LQ  ++ NMVA++   P+   L  +L A++  ++EVV RR++Y L KA+DR H++ G
Sbjct: 121 NTDLQIPYNFNMVAISNRHPKLLGLREMLDAYIGHQKEVVTRRSQYELKKAQDRQHIVEG 180

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L  A++ LDEV+  IR S +   A+  L+ +                             
Sbjct: 181 LMKALSILDEVIAAIRASKDKRDAKDNLISQ--------------------------FGF 214

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           +E Q  AI+ L+L RLT      +R E   L  ++ E L IL S  +LL +IK++L  VK
Sbjct: 215 TEPQAEAIVSLQLYRLTNTDITALRAEAEELAQKVAELLSILQSEKKLLSVIKKDLKDVK 274

Query: 510 DELDTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
                 RR+        + +  E  I  ED++VTV++ GYVKR     + A         
Sbjct: 275 KRFADARRSVIEAEIEEIKINLEVLIASEDVIVTVTNEGYVKRTSQRSFAASNG-----Q 329

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
              M+D D +     ++T   +L F+  G      V  LP    +  G+ + N++ +++ 
Sbjct: 330 DFGMKDSDRLMSKLDMNTTDVLLVFTDKGSYMYLPVHELPDIRWKDLGQHVANLVPIDRT 389

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI-AMKLDSRDEILS 686
           E I   +P  + E      Y++F TK+G V++++L ++     S  + A+ L + D +  
Sbjct: 390 ESIIGAIPVKDFE---AEAYLMFITKNGMVKKSELKNYKAQRYSKPLVAVNLKNDDVVTD 446

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V     + D++L T +G  + FP   + V   R + GV+GI+L  GD V+S  +V +   
Sbjct: 447 VFLTDGKQDLMLATSMGYALWFPEEEVSVVGARAA-GVKGINLKDGDYVVSGKLVSNV-- 503

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                            KE+ ++  +++
Sbjct: 504 -------------------------------------------------KEEAVVIATQR 514

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+    +F  ++R+ +G+      K N    +V +    ++D+I + S+KG + +V 
Sbjct: 515 GAIKKMKLAEFERTSRAKRGLVMLRELKANPH-RVVGMVLAKNHDKIFIESEKGVIEQVS 573

Query: 867 VNEIRIASRATKGVVIFSTAKDER 890
            +++R   R + G  I    + + 
Sbjct: 574 ASDLRFNDRYSNGSFI--LDESDS 595



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 17/218 (7%)

Query: 693 ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS---MAIVLHADADYD 749
           E+ I+  T  G   R    +     G      +   +   D+++S   M          D
Sbjct: 303 EDVIVTVTNEGYVKRTSQRSFAASNG------QDFGMKDSDRLMSKLDMNTTDVLLVFTD 356

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           +       +     +   D  +  +         +I      +    E +++ +++ G  
Sbjct: 357 KGSYMYLPVHELPDIRWKDLGQHVANLVPIDRTESIIGAIPVKDFEAEAYLMFITKNGMV 416

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALV-AVFPVNDNDQIILVSDKGTLIRVPVN 868
           K++   +++   R  K + A ++    +   +V  VF  +    ++L +  G  +  P  
Sbjct: 417 KKSELKNYKAQ-RYSKPLVAVNL----KNDDVVTDVFLTDGKQDLMLATSMGYALWFPEE 471

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           E+ +      GV   +    + VVS + +  S + +EA
Sbjct: 472 EVSVVGARAAGVKGINLKDGDYVVSGKLV--SNVKEEA 507


>gi|18476193|gb|AAL05404.1| DNA topoisomerase IV subunit C [Enterobacter aerogenes]
          Length = 188

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTV 151
           Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +LG+ TV
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLLSELGQGTV 119

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    + +++ P  
Sbjct: 120 DWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAITLLEKPKT 179

Query: 212 DLDALMEII 220
            LD L++I+
Sbjct: 180 TLDELLDIV 188


>gi|46019116|emb|CAE52022.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 132/212 (62%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NP+I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPEITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|163789018|ref|ZP_02183462.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
 gi|159875682|gb|EDP69742.1| DNA topoisomerase IV subunit A [Flavobacteriales bacterium ALC-1]
          Length = 891

 Score =  344 bits (883), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 160/811 (19%), Positives = 301/811 (37%), Gaps = 112/811 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           + +++ D   ++ I  V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  
Sbjct: 6   DDLLNEDSGNQETIKKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 63

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  
Sbjct: 64  LD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILT 115

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  ++        +++ +YDG  +EP+ L   +P +L  GG G
Sbjct: 116 GDRAAASRYIEARLSKFALDVVY--NPKITEWQASYDGRRKEPINLPVMFPLLLAQGGEG 173

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T I  HN  E++D  V  +      +         PDFPT  +          Y
Sbjct: 174 IAVGLSTKILPHNFIELIDASVKHLKGKRFTIL--------PDFPTAGIADFTN-----Y 220

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     +R  + I     D+  + +TEIP+    +++++ I  L    +        +
Sbjct: 221 NDGLRGGKVRVRAKI--AQRDKNTLAITEIPFATTTSSLIDSI--LKANDKGKIKIKKIE 276

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++      ++I L  G S D  ++ LY +T+ ++  S     +   KP    +  +L+  
Sbjct: 277 DNTAAEVEILIHLPSGLSPDKTIDALYAFTNCETSISPLGCVIEDNKPFFVGVTEMLRRS 336

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
                +++ +  +  L++  ++ H      I +     + R I      E          
Sbjct: 337 TDNTVQLLKQELEIKLSELEEQWHFASLERIFIE--KRIYRDIEEEETWE---------- 384

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                   +I  ID             ++E     + E+R+ R++    D  + ++++L 
Sbjct: 385 -------GVIKAIDKGLAPHVKHLKRKVTEDDIVRLTEIRIKRISKFDIDKAQQKIDALE 437

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMV 539
            +I E    L++   L+         +K +      R+T I                D  
Sbjct: 438 DQIAEVKHHLAN---LIDYAIAYFERLKKDYGEGKERKTEIR----------IFEDVDAT 484

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             V     ++   L V R +   G                +   S    ++ F+  G + 
Sbjct: 485 KVV-----IRNTKLYVNREEGFIGTSL--------RRDEYVCDCSDIDDIIVFTKEGKMM 531

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV     GS    GK +I++    + ++ T       D     +           V+R
Sbjct: 532 VTKV-----GSKTFIGKNIIHVAVFKKKDKRTVYNMIYRDGKGGPS----------YVKR 576

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++   +          L + ++          + +   +          + +     R
Sbjct: 577 FAVTSMTRDREYD-----LTNGNK---------GSVLWYFSANPNG----EAEVVTVMLR 618

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               V+   L        + I   +          +K +  + + +S          +  
Sbjct: 619 QVGSVK--KLKWDLDFADILIKGRSSKGNLVTKYSVKRVELKEKGVSTLKPRKIWFDDTV 676

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                            E  +L +++ G  K
Sbjct: 677 QRLNVDERGELIGEFRGEDRLLIITQSGIVK 707


>gi|46019104|emb|CAE52016.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019106|emb|CAE52017.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019114|emb|CAE52021.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019118|emb|CAE52023.1| gyrase subunit A [Bacillus licheniformis]
          Length = 213

 Score =  344 bits (883), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 133/212 (62%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 2   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 61

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 62  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 121

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 122 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 181

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 182 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 213


>gi|190888716|gb|ACE95983.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 124/162 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+ ++K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLIYDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|46019102|emb|CAE52015.1| gyrase subunit A [Bacillus licheniformis]
 gi|46019122|emb|CAE52025.1| gyrase subunit A [Bacillus sonorensis]
          Length = 213

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 133/212 (62%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 212


>gi|227553418|ref|ZP_03983467.1| conserved hypothetical protein [Enterococcus faecalis HH22]
 gi|227177447|gb|EEI58419.1| conserved hypothetical protein [Enterococcus faecalis HH22]
          Length = 198

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 99/194 (51%), Positives = 139/194 (71%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E+ + +  +++ + M + +  Y+  +I  RA+PD+RDGLKPV RRILF M + G  ++K 
Sbjct: 5   EKRQEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKG 64

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RY
Sbjct: 65  FRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRY 124

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL + +  LL D+ K+TVDF  N+D + +EP VL A+YPN+LVNG  GI+ G AT I
Sbjct: 125 TEARLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEI 184

Query: 191 PTHNLGEVVDGCVA 204
           PTHNL E++DG V 
Sbjct: 185 PTHNLAEIIDGTVY 198


>gi|224026477|ref|ZP_03644843.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
 gi|224019713|gb|EEF77711.1| hypothetical protein BACCOPRO_03234 [Bacteroides coprophilus DSM
           18228]
          Length = 877

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 152/623 (24%), Positives = 262/623 (42%), Gaps = 88/623 (14%)

Query: 1   MTEHIIS------SDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDL 45
           M+E           ++E       V  TDE          QN +L YA  VIL RA+P +
Sbjct: 1   MSEDTFDKDTDKLPEKEGHSDYKPVDQTDEAVKHQLSGMYQNWFLDYASYVILERAVPHI 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q   
Sbjct: 61  NDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ--- 113

Query: 106 LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EP
Sbjct: 114 -KELLIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRNREP 170

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           V L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L         PD
Sbjct: 171 VTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFKLY--------PD 222

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           F TG  I       + Y  G    V+R  + I  +  D + + ++EIPY    +++++ I
Sbjct: 223 FQTGGSID-----VSRYNDGERGGVVRVRAKI--SKLDNKTLCISEIPYGKTTSSLIDSI 275

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            + + + +I       D++  +   ++I L  G S+D  L+ LY +T  +   S N   +
Sbjct: 276 LKAIEKGKIKIRK--VDDNTARKVEILIHLAPGVSSDKTLDALYAFTDCEVNISPNCCVI 333

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +  KP   T+  +L+  V    +++ +  +   N+  +  H      I +       +  
Sbjct: 334 DNKKPHFLTVSDVLRKSVNNTRDLLRKELEIQKNETLETLHFASLEKIFIEERIYKDKQF 393

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
             + N + A   + +R                            +++     ++E+++AR
Sbjct: 394 EQAENMDIACEHIDERLTP-----------------FYPQFVREVTKEDILRLMEIKMAR 436

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVE 522
           +    +D     +  L  EI+E   I +  + L     +    +KD+   D PRRT I  
Sbjct: 437 ILKFNKDKADELIARLKAEIEE---IDNHLAHLTEYTIEWYRHLKDKYGKDFPRRTEIRN 493

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
               +  +     E                    +      +G  G  ++ +     +  
Sbjct: 494 FDTIVATKVVEANE--------------------KLYINREEGFIGTGLKKD---EFICN 530

Query: 583 VSTHTSVLFFSSLGFVYKEKVWR 605
            S    V+ F   G     ++  
Sbjct: 531 CSDIDDVIIFYKDGKYKIVRISD 553


>gi|228473476|ref|ZP_04058229.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275083|gb|EEK13886.1| DNA gyrase/topoisomerase IV, A subunit [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 863

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 168/814 (20%), Positives = 305/814 (37%), Gaps = 111/814 (13%)

Query: 1   MTEHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M EH I     + +   +++ I+   QN +L YA  VIL RA+P L DG KPV RRI+  
Sbjct: 1   MEEHPIPPQASQGEPQETITRISGMYQNWFLDYASYVILERAVPALEDGFKPVQRRIMHS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++    + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG++G+
Sbjct: 61  MDEL---EDGRYNKVANIVGNTM-KYHPHGDASIGDAIIQLGQ----KELLIDTQGSWGN 112

Query: 120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +  GD  AA RY E RL K A  +L         ++ +YDG   EPV L  ++P +L  G
Sbjct: 113 ILTGDDAAAPRYIEARLSKFALDVL--FSPKVTQWQKSYDGRNDEPVHLPVKFPLLLAQG 170

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T I  HN  E++D  V  ++    +L         PDFPT  ++       
Sbjct: 171 AEGIAVGLSTKILPHNFNELIDASVLYLEGKPFELY--------PDFPTAGIMD-----A 217

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y+ G     IR  + I     D+  +V+TEIP+    +++++ I +   + +I  +  
Sbjct: 218 TGYSDGMRGGRIRVRARI--AQRDKSTLVITEIPFGTTTSSLIDSILKANEKGKIKVLK- 274

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             D++      +++ L +G S D  ++ LY +T  ++  S     + G +P    +  IL
Sbjct: 275 -VDDNTAANVEILVHLPKGISPDKTIDALYAFTDCETSVSPLCCVIEGSRPLFIGVSDIL 333

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           K       E++ +  +  L+    + H                     S      R E+ 
Sbjct: 334 KKSTDRTVEILKKELEVKLDDLEQKWHN-------------------ASLEKIFIREEMY 374

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
               N SD + L   +              +++     + ++ + R+T          L 
Sbjct: 375 IDFKNYSDKESLYAYLYKRFEPFAEQLLRPITDEDLERLTQIPMIRITRYDTYKAEENLL 434

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRE 536
            +   I E  D L++   L+        +++ +      R+T I                
Sbjct: 435 KIEENIAEVKDHLAN---LIAFAIDYFRNLQKKYGKGKDRKTEIRPFD------------ 479

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
               T+     V R      +      +G  G  ++ +++V D    S    ++ F++ G
Sbjct: 480 ----TIEATKVVVRNL----KLYVNREEGFVGTSLKKDEYVAD---CSDIDDIIVFTADG 528

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +   KV        ++     I  + + +     T+        +    Y+   T  G 
Sbjct: 529 KMIITKVTE------KSYIGKNIVHVGVFKKNDTRTVYNLVYRNGNDKISYIKRFTVTGI 582

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +R                       D+   V    +++ +L  +          + +   
Sbjct: 583 IR-----------------------DKEYDVVEPHKDSQVLYFSANPNG----EAEVISV 615

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R +  V+   L        + I   +          +K +  + + +S          
Sbjct: 616 ILRQAGSVK--KLKWDINFADILIKGRSSRGNIVTKYAIKRIELKEKGVSTLKPRKIWYD 673

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                               E  +L +S+    K
Sbjct: 674 PIVHRLNTEGRGELLGSFKGEDRLLLISKDAIVK 707


>gi|190888710|gb|ACE95980.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888736|gb|ACE95993.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888738|gb|ACE95994.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888740|gb|ACE95995.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888742|gb|ACE95996.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888744|gb|ACE95997.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
 gi|190888746|gb|ACE95998.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  344 bits (882), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 122/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|329124303|gb|AEB72029.1| DNA gyrase subunit A [Aeromonas sp. A7(2011)]
          Length = 158

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 94/156 (60%), Positives = 124/156 (79%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+
Sbjct: 1   DYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            A+YD + R+AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+T
Sbjct: 61  IAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKET 120

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           VD+ PNYDG+   P V+  + PN+LVNG  GIAVG 
Sbjct: 121 VDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGW 156


>gi|325287882|ref|YP_004263672.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
 gi|324323336|gb|ADY30801.1| DNA topoisomerase (ATP-hydrolyzing) [Cellulophaga lytica DSM 7489]
          Length = 879

 Score =  344 bits (882), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 156/786 (19%), Positives = 290/786 (36%), Gaps = 106/786 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++ +L YA  VIL RA+P + DG KPV RRI+  + ++    + +Y K A + G  M +Y
Sbjct: 30  KDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD---DGRYNKVANVVGHTM-QY 85

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 86  HPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSKFALDVV- 140

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                  +++ +YDG  +EPV L  ++P +L  G  GIAVG++T I  HN  E++D  + 
Sbjct: 141 -FSPKITEWQQSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELIDSSIK 199

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +      L         PDFPT  +I         Y  G     IR  + I  +  D+ 
Sbjct: 200 HLKGQKFKL--------FPDFPTSGIID-----VTGYNDGLRGGKIRVRAKI--SQSDKN 244

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V++EIPY  N +++++ I  L    +        +++      +++ L  G S D  +
Sbjct: 245 TLVISEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTAADVEILVHLPAGISPDKTI 302

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T+ +S  S     +   KP    +  +L+    +  E++    +  L +  ++ 
Sbjct: 303 DALYAFTACESSISPLGCIIEDNKPLFIGVTEMLQRSTDYTVELLKEELEIQLGELEEQW 362

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H      I +   + + R I      E                  +I  ID         
Sbjct: 363 HFSSLERIFIE--NRIYRDIEEEETWE-----------------GVIAAIDKGLKPHTKH 403

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++E     + E+R+ R++    D  +  L+SL   I E      +   L+      
Sbjct: 404 LKRAVTEEDITRLTEIRIKRISKFDLDKAQQLLDSLEERIAEVK---HNLEHLVEFAINY 460

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
             ++KD+    R            +       +    V     ++   L V R +   G 
Sbjct: 461 FKNLKDKYGKGR--------ERKSEIRVFDDIEATKVV-----IRNTKLYVNREEGFVGT 507

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                    +         S    ++ F+  G +              ++     NI+ +
Sbjct: 508 SLKKDEYVTD--------CSDIDDIIVFTKDGHMMV--------SKVDSKIFVGKNIIHV 551

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
              ++      +                    ++R  ++   +              D++
Sbjct: 552 AVFKKKDKRTTYNMIYKDGKGG-------ASYIKRFNVTSVTR--------------DKL 590

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             + T    +D+L  +          + I     R    ++   L        + I   +
Sbjct: 591 YPLTTGKPNSDVLYFSANPNG----EAEIVTIHLRQVGSIK--KLKWDMDFSDILIKGRS 644

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                     +K +  + + +S          +  S                E  IL ++
Sbjct: 645 SKGNIVSKYAVKRIDLKEKGVSTLKPRKIWFDDVVSRLNLDGRGELLGEFKGEDLILVIT 704

Query: 805 EKGFGK 810
           +KG  K
Sbjct: 705 QKGIVK 710


>gi|313159342|gb|EFR58706.1| DNA gyrase/topoisomerase IV, A subunit [Alistipes sp. HGB5]
          Length = 1048

 Score =  343 bits (880), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 155/585 (26%), Positives = 255/585 (43%), Gaps = 77/585 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M    V  + +Y K A I G+ M +Y
Sbjct: 61  KNWFLDYASYVILERAVPHVEDGLKPVQRRILHAM---KVVDDGRYNKVANIVGQTM-QY 116

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A+ ++ 
Sbjct: 117 HPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFANEVV- 171

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
              K T ++   YDG  +EPV L  ++P +L  G  GIAVG+A+ I  HN  E+++ C+A
Sbjct: 172 -FNKKTTEWMLTYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELINACIA 230

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   +  L         PDFPTG +        + Y  G   G++ +R          D
Sbjct: 231 HLQGREFQLY--------PDFPTGGMAD-----VSRYNDGLRGGAVKVRAKIS----KID 273

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +  + +TEIPY     ++ + I +   + +I       + +DR    +VI++    S+D 
Sbjct: 274 KRTLAITEIPYTTTTESIKDSIIKANDKGKIKIKKVDDNTADR--VEIVIQVSPDESSDK 331

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   + N   +   KP    +  IL+      + ++ R  +  L +  +
Sbjct: 332 TIDALYAFTDCEVSIAPNACLIWEDKPHFLGVSEILRRSAEHTKWLLGRELEIRLGELNE 391

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +   +++ ++I  S + E A   + +       +               
Sbjct: 392 AWHAASLERIFIE--NKLYQLIEGSKSREEAYAAVDKGLEPFKKLLR------------- 436

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
               + LS+VQ   + EL+  R++    D   NE+  +  +IK     L+    L     
Sbjct: 437 --REVTLSDVQ--RLTELKFIRISRYDSDKADNEIRQIEEDIKSTQYDLN---HLTEYAV 489

Query: 503 QELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                ++D+      RRT +          +    E   V V++        L V RA+ 
Sbjct: 490 AYYERIRDKYGKGRERRTELR---------EFDNIEATKVAVTN------AKLYVDRAEG 534

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             G G      +       +   S    V+ F+  G     KV  
Sbjct: 535 FFGIG------KSMKDAELVCDCSDIDDVIVFTKDGRYVITKVSD 573


>gi|190888750|gb|ACE96000.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 162

 Score =  343 bits (880), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 94/162 (58%), Positives = 122/162 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GIAVG
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVG 162


>gi|198276965|ref|ZP_03209496.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
 gi|198270490|gb|EDY94760.1| hypothetical protein BACPLE_03170 [Bacteroides plebeius DSM 17135]
          Length = 881

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 171/828 (20%), Positives = 310/828 (37%), Gaps = 126/828 (15%)

Query: 1   MTEHIIS---------SDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAI 42
           M+E              ++EE      VS TDE          QN +L YA  VIL RA+
Sbjct: 1   MSEDTFDKDEKEMANLPEKEEHSDYKPVSTTDEAVKHQLSGMYQNWFLDYASYVILERAV 60

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q
Sbjct: 61  PHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ 116

Query: 103 DWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
               + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  
Sbjct: 117 ----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRN 170

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   D  L        
Sbjct: 171 REPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEDFQLY------- 223

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML 281
            PDF TG  I       + Y  G    V+R  + I  +  D + + ++EIPY    ++++
Sbjct: 224 -PDFQTGGSID-----VSRYNDGERGGVVRVRAKI--SKIDNKTLCISEIPYGKTTSSLI 275

Query: 282 EKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNM 341
           + I + + + +I       D++      +++ L  G S+D  L+ LY +T  +   S N 
Sbjct: 276 DSILKAIEKGKIKVRK--VDDNTAGKVEILVHLTPGVSSDKTLDALYAFTDCEVNISPNC 333

Query: 342 VALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
             ++  KP   ++  +LK  V     ++ +  +   ++  +  H      I +       
Sbjct: 334 CVIDNKKPHFLSVSKVLKKSVDNTLALLRKELEIQRDETLETLHFASLEKIFIEERIYKD 393

Query: 402 RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
           +    + + + A   + +R                            +++     ++E++
Sbjct: 394 KQFEQADSMDAACEHIDERLTP-----------------YYPQFVREVTKEDILRLMEIK 436

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTR 519
           +AR+    +D     +  L     E  +I +  + +          +K++   + PRRT 
Sbjct: 437 MARILKFNKDKADEFIARLKA---ELEEIDNHLAHITEYTIDWYQRLKEKYGKNFPRRTE 493

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           I      +  +     E                    +      +G  G  ++ +     
Sbjct: 494 IRNFDTIVATKVAEANE--------------------KLYINREEGFIGTGLKKD---EY 530

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           +   S    V+ F   G     +V          +     NIL +N  ++      +   
Sbjct: 531 VCNCSDIDDVIIFYKDGKYKIVRVSD--------KLFVGKNILYVNVFKKNDKRTIYNVI 582

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT 699
                  Y         ++R  ++  I+              D    V   T  + I+  
Sbjct: 583 YRDGKEGYYY-------IKRFNVTSIIR--------------DREYDVTQGTPGSKIVYF 621

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T          + +     R +  ++  +  +     ++ I              +  +S
Sbjct: 622 TANPNG----EAEVIRVVLRPTPRIKKPTFERD--FSTINIKGKQSMGNLLTKAEVHKIS 675

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            ++R  S          +D          +       E  IL V + G
Sbjct: 676 LKQRGGSTLGGRKVWFDHDVLRLNYDGRGQYLGEFQSEDSILVVHKNG 723


>gi|170676385|gb|ACB30380.1| DNA gyrase subunit A [Burkholderia mallei]
 gi|170676387|gb|ACB30381.1| DNA gyrase subunit A [Burkholderia mallei]
          Length = 157

 Score =  343 bits (879), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 126/157 (80%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|298208511|ref|YP_003716690.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
 gi|83848434|gb|EAP86303.1| DNA topoisomerase IV subunit A [Croceibacter atlanticus HTCC2559]
          Length = 897

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 159/811 (19%), Positives = 296/811 (36%), Gaps = 110/811 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           +++   + E  +      +T   ++ +L YA  VIL RA+P + DG KPV RRI+  M  
Sbjct: 21  DNLEQPELEPTQDDVLTKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 80

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  
Sbjct: 81  LD---DGRYNKVANIVGHTM-QYHPHGDASIGDAMVQVGQ----KDLLIDMQGNWGNILT 132

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +L        D++ +YDG  +EP+ L  R+P +L  G  G
Sbjct: 133 GDRAAASRYIEARLSKFALEVL--FNPKITDWQLSYDGRRKEPINLPVRFPLLLAQGAEG 190

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T I  HN  E++D  +  +      +         PDF TG          + Y
Sbjct: 191 IAVGLSTRILPHNFIELIDASIKHLQGKRFKIY--------PDFQTGGEAD-----ISNY 237

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     +R  + I  +  D+  ++++EIPY      +++ I  L    +        +
Sbjct: 238 NDGLRGGKVRVRAKI--SQQDKNTLLISEIPYGTTTTTLIDSI--LKANDKGKIKIKKIE 293

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++      +++ L    S D  ++ LY +T  +   S     +   +PE   +  IL+  
Sbjct: 294 DNTAANVEILVHLPPNISPDKTIDALYAFTRCEESISPLSCIIINNRPEFIGVSEILRRS 353

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
                 ++    +  L++   + H      I +   + + R I      E          
Sbjct: 354 TDHTVSLLKSDLEIKLDELESQWHYASLERIFIE--NRIYRDIEEEETWE---------- 401

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                   +I  ID       +     ++E     + E+R+ R++    D  + ++++L 
Sbjct: 402 -------GVIQAIDKGLKPHTAHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALE 454

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMV 539
            +I+E    L     L+        ++K +   D  R+T +         +         
Sbjct: 455 DQIEEVKHHL---DHLVEFAINYFANLKKDYGKDKDRKTELKAFEDIEATKVV------- 504

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
                   ++   L V RA+   G                +   S    ++ F+  G + 
Sbjct: 505 --------IRNTKLYVNRAEGFIGTSL--------KRDEYVTDCSDIDDIICFTEDGTMM 548

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV      S    GK +I++    + ++ T       D  S N            ++R
Sbjct: 549 VTKVD-----SKTFIGKNIIHVAVFKKKDKRTIYNMIYRDAKSRNT----------YMKR 593

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++   +              D   ++ +  +   +   +          + +     R
Sbjct: 594 FAVTSMTR--------------DREYNMGSDKKNTKVFYFSANPNG----EAEVVTVYLR 635

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               V+   L        MAI              +K +  +   +S          +  
Sbjct: 636 QVGQVK--KLKFEVDFSDMAIKGRGVKGNIVTKHPVKRIELKEEGVSTLKPRRIWFDDTV 693

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                            E  +L +++ G  K
Sbjct: 694 QRLNVDDRGDLLGEFKAEDRLLIITQGGIVK 724


>gi|282860360|ref|ZP_06269428.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
 gi|282586858|gb|EFB92095.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella bivia
           JCVIHMP010]
          Length = 917

 Score =  342 bits (878), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 151/716 (21%), Positives = 277/716 (38%), Gaps = 102/716 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 101 HPHGDASIGDALVQMGQ----KYLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++    ++
Sbjct: 156 -FNPKTTEWQASYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICSAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D  +         PDFPTG  I       + Y  G+  G++ +R          D
Sbjct: 215 YLKGKDFSIY--------PDFPTGGSID-----VSKYNDGQRGGALKVRAKIE----KLD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ E+P+    +++ E I + + + +I  +  + D +  +   + + L  G S+D 
Sbjct: 258 NKTLVIREVPFTKTASSLQESITKAIEKGKIK-VRKVEDMTASE-VEIQLHLTPGTSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   +   KP   T+  +LK  V   ++++    +   ++  +
Sbjct: 316 TIDALYAFTDCEINISPNCCVIEDNKPGFLTVSDVLKYSVNHTKDLLQLELEIRKHELEE 375

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           +        I +         I      ETA+           DI +++  +D       
Sbjct: 376 QLFYNSLERIFIE------ERIYKERKFETAK-----------DIDEVVLFVDSKLEPFK 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
           +     ++      +LE+++ R+    +D     +  +  EI E   I    S ++ +  
Sbjct: 419 NTFIREVTRDDIIRLLEIKMQRILKFNKDKADELIAKIKAEIAE---IDKDLSEMVRVTI 475

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +    +K++   D PR T I      +  +     E +   +   G      L       
Sbjct: 476 EWFKHLKEKYGKDHPRLTEIKSFDTIIAAKVVDANEKLY--IDRQGGFIGTGL------- 526

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                              +   S    ++ F   G     ++          +     N
Sbjct: 527 --------------KKAEFVQNCSDLDDIIIFYRDGKYKIIRIAD--------KVFVGKN 564

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           +L L   ++      +               T    ++R  ++                 
Sbjct: 565 VLHLQVFKKNDKRTIYNVVYKDGE-------TNIHYIKRFNVTSMT--RDKEYDLTTGTK 615

Query: 681 RDEILSVETC-TQENDILLTTKLGQCVR-----FPISAIR--VFAGRNSVGVRGIS 728
              ++        E +++  T      +     F           GR++ G     
Sbjct: 616 GSRVVYFTANPNGEAEVIKVTLNPNLEKKKQNIFLERDFSQIAIKGRDAKGNILTK 671


>gi|86133356|ref|ZP_01051938.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
 gi|85820219|gb|EAQ41366.1| DNA topoisomerase IV subunit A [Polaribacter sp. MED152]
          Length = 912

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/813 (19%), Positives = 291/813 (35%), Gaps = 112/813 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           +T    ++D  +E+ IT V  T   +  +L YA  VIL RA+P L DGLKPV RRI+  M
Sbjct: 14  LTNLDSNTDSPQEETITKV--TGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSM 71

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 72  KDLD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KELLIDMQGNWGNI 123

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  ++      T +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 124 LTGDRAAASRYIEARLSKFALDVV--FNPKTTEWKLSYDGRRKEPIDLPVKFPLLLAQGA 181

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E++D  +  +      L         PDF TG +         
Sbjct: 182 EGIAVGLSTKILPHNFNELIDASIKYLKGRSFKLV--------PDFLTGGIADFTN---- 229

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G+    +R  + I  +  D++ +V+TEIP+    +++++ I  L    +       
Sbjct: 230 -YNDGKRGGKVRIRAKI--SQLDKKTLVITEIPFSTTTSSLIDSI--LKANDKGKIKIKK 284

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            +++      +++ L    S D  ++ LY +T+ ++  S     +    P    +  +LK
Sbjct: 285 IEDNTAAEVEILVHLPPNVSPDKSIDALYAFTNCETSISPLACTIKDNTPVFTGVSDMLK 344

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                  E++ R  +  LN+  ++ H      I +   + + R I      E        
Sbjct: 345 HSTDLTVELLKRELEIQLNELEEQWHFSSLERIFIE--NRIYRDIEEEETWE-------- 394

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                     +I+ ID             ++      + E+R+ +++    D  +  + S
Sbjct: 395 ---------GVIEAIDKGLKPHIKHLKRAITVDDITRLTEIRIKKISKFDIDKAKQFIES 445

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRED 537
           L  +I      L++   L+         +KD       R+T I                 
Sbjct: 446 LEEKIAGVKHHLAN---LIEFAIAYFKRLKDTYGKGKERKTEIRIFDD------------ 490

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
               V+    +    L V RA+   G                +   S    ++ F   G 
Sbjct: 491 ---IVASKVAMNNAKLYVNRAEGFIGTSL--------KRDEFVTDCSDIDDIIVFRKDGV 539

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +   KV                             I+     +            + G  
Sbjct: 540 MLVTKVDAKTFVGKD--------------------IIHIAVFKKKDKRTVYNMMYRDGKG 579

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
             + +  F   + +      L +  +   V               G       + +    
Sbjct: 580 GPSYMKRFNVTSVTRDKEYNLANGSKGSVV-------HYFSANPNG------EAEVVTIN 626

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            R    V+   L        +A+              +K +  +   +S          +
Sbjct: 627 LRAVGSVK--KLKWDIDFADLAVKGRGVRGNTITKYAIKSVDFKSEGVSTLKPRKIWFDD 684

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                   +          E  +L +++ G  K
Sbjct: 685 AVQRLNVDNRGELLGEFRAEDKLLIITQSGKAK 717


>gi|325268779|ref|ZP_08135405.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
 gi|324988884|gb|EGC20841.1| DNA topoisomerase 4 subunit A [Prevotella multiformis DSM 16608]
          Length = 903

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 161/787 (20%), Positives = 294/787 (37%), Gaps = 110/787 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  V+
Sbjct: 156 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  L         PDFPTG  I       + Y  G+   V++  + +E    D +
Sbjct: 215 CLRGEEFHLY--------PDFPTGGSID-----VSKYNDGQRGGVLKVRARVE--KLDSK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V + ++  I  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP   T+  +L+  V   + ++ R  +   ++  ++ 
Sbjct: 318 DALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKRELEIRKHELEEQL 377

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I +   D +             +    + + +  ++      +D         
Sbjct: 378 FYNSLERIFIE--DRIY------------KERKFETARSLDEVVAF---VDSKLEPYKKT 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+++ R+    +D     +  +  EI E   I      ++ +  + 
Sbjct: 421 FVREVTRDDILRLLEIKMQRILKFNKDKADELIRKIKAEIAE---IDKDLGEMVRVTIEW 477

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++   D PRRT I      +  +     E                L + R     
Sbjct: 478 FTHLKEKYGKDHPRRTEIKNFDTIVAAKVVDANEK---------------LYIDRQAGFI 522

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G G              +   S    V+ F   G     ++        +      +  +
Sbjct: 523 GTGLKKA--------EFVQNCSDLDDVIIFYRDGKYKVIRIAD------KVFVGKGVLHV 568

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            + +     TI      +      Y         ++R  ++   +              D
Sbjct: 569 QVFKKNDKRTIYNVVYRDGKTGPYY---------IKRFNVTSITR--------------D 605

Query: 683 EILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +   V   T  + I   T    G+     I+ +     R        ++        + I
Sbjct: 606 KEYDVTLGTPGSRICYFTANPNGEAELIKIT-LDPNPDRKKQ-----NIFMERDFAGILI 659

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A          +  +S +    S           D                  +  I
Sbjct: 660 KGRAAKGNLLTKESIHRISLKSHGHSTLGGRKVWFDPDVKRINYEEHGLFLGEFSDQDSI 719

Query: 801 LTVSEKG 807
           L V + G
Sbjct: 720 LVVLKNG 726


>gi|325299748|ref|YP_004259665.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
 gi|324319301|gb|ADY37192.1| DNA topoisomerase (ATP-hydrolyzing) [Bacteroides salanitronis DSM
           18170]
          Length = 879

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 153/693 (22%), Positives = 277/693 (39%), Gaps = 104/693 (15%)

Query: 1   MTEHIIS-------SDEEEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPD 44
           M++  +         ++E +      S         ++   QN +L YA  VIL RA+P 
Sbjct: 1   MSDDTLDKNETTDIPEKESDTNYKPASPADKAVKYQLSGMYQNWFLDYASYVILERAVPH 60

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q  
Sbjct: 61  INDGLKPVQRRILHAMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ-- 114

Query: 105 SLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
             + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +E
Sbjct: 115 --KDLLIDCQGNWGNILTGDDAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRNRE 170

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           PV L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L         P
Sbjct: 171 PVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFHLY--------P 222

Query: 224 DFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           DF TG  +       + Y  G    V+R  + I  +  D + + ++EIPY    +++++ 
Sbjct: 223 DFQTGGAVD-----VSRYNDGERGGVVRVRAKI--SKIDNKTLCISEIPYGKTTSSLIDS 275

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           I + V + +I       D++      +++ L  GAS+D  L+ LY +T  +   S N   
Sbjct: 276 ILKAVEKGKIKVRK--VDDNTADKVEILVHLAPGASSDKTLDALYAFTDCEVNISPNCCV 333

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +   KP   ++  +L+  V     ++ R  +   ++  +  H      I +       R 
Sbjct: 334 IEDKKPHFLSVGTVLRKSVDHTLGLLRRELEIQRDETLETLHFASLEKIFIEERIYKDRG 393

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLA 463
              + N + A   + +R                            +++     ++E+++A
Sbjct: 394 FEQAENMDAACAHIDERLTP-----------------FYPQMVREVTKDDILRLMEIKMA 436

Query: 464 RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIV 521
           R+    +D     +  L  +I+E  + L   + L          +K++     PRRT I 
Sbjct: 437 RILKFNKDKADENIARLKADIEETENHL---AHLTDYTIAWFRRLKEKYGAQFPRRTEIR 493

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
                +  +     E                    +      +G  G  ++ +     + 
Sbjct: 494 NFDTIVATKVAEANE--------------------KLYINREEGFIGTGLKKD---EFVC 530

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
             S    V+ F   G     +V          +     NIL +N  ++      +     
Sbjct: 531 NCSDIDDVIIFYRDGKYKVVRVQD--------KLFVGKNILYVNVFKKNDKRTIYNVIYR 582

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
              + Y         ++R  ++  I+       
Sbjct: 583 DGKDGYHY-------IKRFNVTSMIRDREYDVT 608


>gi|255535416|ref|YP_003095787.1| DNA topoisomerase IV subunit A [Flavobacteriaceae bacterium
           3519-10]
 gi|255341612|gb|ACU07725.1| Topoisomerase IV subunit A [Flavobacteriaceae bacterium 3519-10]
          Length = 868

 Score =  342 bits (877), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 166/813 (20%), Positives = 301/813 (37%), Gaps = 110/813 (13%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +  ++E     +   ++   ++ +L YA  VIL RAIP + DG KPV RRI+  M ++  
Sbjct: 1   MMEEQENHHEESLKKVSGLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMREL-- 58

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDP 124
             + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD 
Sbjct: 59  -EDGRYNKVANLVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDMQGNWGNIYTGDS 112

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY E RL   A  ++      T  +  +YDG   EP+ L  ++P +L +G  GI V
Sbjct: 113 AAAARYIEARLTPFALEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLASGVEGIGV 170

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T I  HN  E+++  +A + N   +L         PDF TG ++       + Y  G
Sbjct: 171 GLSTKIMPHNFNELINASIAHLKNKSFELY--------PDFLTGGMLD-----VSNYNDG 217

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                IR  + I +   +   I  TE+P+  N   +++ I +   + +I       + SD
Sbjct: 218 ERGGRIRTRARIIQKEKNTLCI--TELPFGKNTGDLIDSIIKANEKGKIKIKKIEDNTSD 275

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           +    + I L    S D  ++ LY +T  +   S N   + G +PE  T+  IL+     
Sbjct: 276 K--VEINIHLNSDVSPDKTIDALYAFTDCEIPISPNACVIVGNRPEFLTVSEILRRNTDH 333

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
              ++ +  +  L++ +++ H      I +   +E+ + I         + +  +     
Sbjct: 334 TVSLLKKELEIELHELQEKWHFASLEKIFIE--NEIYQEI---------KGKSSKEEVYT 382

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
           +  K L     +    + +D  + L+E        L   R++   +D     L +L  +I
Sbjct: 383 AVDKGLKPFTGNLLRAVTTDDIIKLTE--------LPFMRISRYDQDKAIENLLALEAKI 434

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           ++    L +   L+         ++ +      R+T +         +  +  E      
Sbjct: 435 EQVKYHLDN---LVAYAIDYFTGIQKKFGKGKERKTELRIFDTIDATKVAVANE------ 485

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
                         +      +G  G  ++ +     LF  S    ++ F   G +   K
Sbjct: 486 --------------KFYANFEEGFIGTSLKKDQ---YLFDCSDIDDIITFQKDGTMKVVK 528

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V       P+      I  +++ +     T+      E      Y+   +  G  R    
Sbjct: 529 V------EPKTFIGKNIEHVAVWKKNDKRTVYNMIYREGKEGPYYMKRFSVTGVTRNTDY 582

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   S  +    +   E   V    + N      K    + F    I    GR+S 
Sbjct: 583 KLASDSKGSEMLYFSANPNGEAELVTVLLKSN--ARIRKNKIEIDFSEIGI---KGRDSK 637

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           G                               +K +  +    S          +     
Sbjct: 638 G------------------------NLVTKYPVKKVDLKEEGHSTLAPRKIWFDDTVRRL 673

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
              +          +  ILTV+ +G  K  S  
Sbjct: 674 NADARGTLLGTFKGDDKILTVNAQGDAKLISFD 706


>gi|302345857|ref|YP_003814210.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
 gi|302149088|gb|ADK95350.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           ATCC 25845]
          Length = 908

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/787 (20%), Positives = 299/787 (37%), Gaps = 110/787 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFALETV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  ++
Sbjct: 156 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +L         PDFPTG  I       + Y  G+   V++  + +E    D +
Sbjct: 215 YLRGEEFNLY--------PDFPTGGSID-----VSKYNDGQRGGVLKVRAKVE--KLDNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+      + E I + V + ++  I  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTANTLQESITKAVEKGKLK-IRRVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KPE  T+  +L+      + ++    +   ++  ++ 
Sbjct: 318 DALYAFTDCEINISPNCCVIRDNKPEFLTVSDVLRNSAEHTKALLKLELEIRKHELEEQL 377

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I + +                 R    ++   A DI +++  +D         
Sbjct: 378 FYNSLERIFIED-----------------RIYKERKFETAKDIDEVVSFVDSKLEPYKKT 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+++ R+    +D     +  +  EI E   I    S ++ +  + 
Sbjct: 421 FIREVTRDDIIRLLEIKMQRILKFNKDKADELIQKIKAEIAE---IDKDLSEMVRVTIEW 477

Query: 505 LLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++  +  PRRT I      +  +     E                L + R +   
Sbjct: 478 FTHLKEKYGSDHPRRTEIKSFDTIVAAKVVDANEK---------------LYIDRQEGFI 522

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G G              +   S    V+ F   G     ++        +      +  +
Sbjct: 523 GTGLKKA--------EFVQNCSDLDDVIIFYRDGKYKVIRIAD------KVFVGKGVLHV 568

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            + +     TI      +      Y         ++R  ++   +              D
Sbjct: 569 QVFKKNDKRTIYNVVYRDGKTGPYY---------IKRFNVTSITR--------------D 605

Query: 683 EILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +   V   T  + I   T    G+     I+ +     +        ++       S+ I
Sbjct: 606 KEYDVTLGTPGSKINYFTANPNGEAELIKIT-LDPNPDKKKQ-----NIFMERDFASILI 659

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A          +  +S +    S           D +        R       +  I
Sbjct: 660 KGRAAKGNLLTKESIHRISLKSHGHSTLGGRKVWFDPDVNRINYEDHGRYLGEFSDQDSI 719

Query: 801 LTVSEKG 807
           L + + G
Sbjct: 720 LVILKNG 726


>gi|170676379|gb|ACB30377.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 100/157 (63%), Positives = 125/157 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPHG+ A+Y  + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDIAVYGTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|325855710|ref|ZP_08171901.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
 gi|325483763|gb|EGC86725.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola CRIS
           18C-A]
          Length = 992

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 159/787 (20%), Positives = 290/787 (36%), Gaps = 110/787 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 129 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 184

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 185 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 239

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  V 
Sbjct: 240 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVG 298

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  L         PDFPTG  I       + Y  G+   V++  + +E    D +
Sbjct: 299 CLRGEEFHLY--------PDFPTGGSID-----VSKYNDGQRGGVLKVRARVE--KLDSK 343

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V + ++  I  + D +  +   + + L  G S+D  +
Sbjct: 344 TLVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASE-VEIQLHLTPGTSSDKTI 401

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP   T+  +L+  V   + ++    +   ++  ++ 
Sbjct: 402 DALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKMELEIRKHELEEQL 461

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I +   D +             +    + + +  ++      +D         
Sbjct: 462 FYNSLERIFIE--DRIY------------KERKFETARSLDEVVAF---VDSKLEPYKKT 504

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+R+ R+    +D     +  +  EI E   I      ++ +  + 
Sbjct: 505 FVREVTRDDILRLLEIRMQRILKFNKDKADELIQKIKAEIAE---IDKDLGEMVRVTIEW 561

Query: 505 LLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++      RRT I      +  +     E                L + R     
Sbjct: 562 FTHLKEKYGKDHLRRTEIKNFDTIVAAKVVDANEK---------------LYIDRQAGFI 606

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G G              +   S    V+ F   G     ++        +      +  +
Sbjct: 607 GTGLKKA--------EFVQNCSDLDDVIIFYRDGKYKVIRIAD------KVFVGKGVLHV 652

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            + +     TI      +      Y         ++R  ++   +              D
Sbjct: 653 QVFKKNDKRTIYNVVYRDGKTGPYY---------IKRFNVTSITR--------------D 689

Query: 683 EILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +   V   T  + I   T    G+     I+ +     R        ++        + I
Sbjct: 690 KEYDVTLGTPGSRICYFTANPNGEAELIKIT-LDPNPDRKKQ-----NIFMERDFAGILI 743

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A          +  +S +    S           D                  +  I
Sbjct: 744 KGRAAKGNLLTKESIHRISLKSHGHSTLGGRKVWFDPDVKRLNYEEHGLFLGEFSDQDSI 803

Query: 801 LTVSEKG 807
           L V + G
Sbjct: 804 LVVLKNG 810


>gi|46019124|emb|CAE52026.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 128/212 (60%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++
Sbjct: 61  EILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 121 GVLAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|288803215|ref|ZP_06408649.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
 gi|288334256|gb|EFC72697.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella melaninogenica
           D18]
          Length = 908

 Score =  341 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 162/787 (20%), Positives = 299/787 (37%), Gaps = 110/787 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDMQGNWGNILTGDRAAAPRYIEARLSKFALETV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  ++
Sbjct: 156 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +L         PDFPTG  I       + Y  G+   V++  + +E    D +
Sbjct: 215 YLRGEEFNLY--------PDFPTGGSID-----VSKYNDGQRGGVLKVRAKVE--KLDNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+      + E I + V + ++  I  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTANTLQESITKAVEKGKLK-IRRVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KPE  T+  +L+      + ++    +   ++  ++ 
Sbjct: 318 DALYAFTDCEINISPNCCVIRDNKPEFLTISDVLRNSAEHTKALLKLELEIRKHELEEQL 377

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I + +                 R    ++   A DI +++  +D         
Sbjct: 378 FYNSLERIFIED-----------------RIYKERKFETAKDIDEVVAFVDSKLEPYKKT 420

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+++ R+    +D     +  +  EI E   I    + ++ +  + 
Sbjct: 421 FIREVTRDDIIRLLEIKMQRILKFNKDKADELIQKIKAEIAE---IDKDLNEMVRVTIEW 477

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++   D PRRT I      +  +     E                L + R +   
Sbjct: 478 FTHLKEKYGGDHPRRTEIKSFDTIVAAKVVDANEK---------------LYIDRQEGFI 522

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G G              +   S    V+ F   G     ++        +      +  +
Sbjct: 523 GTGLKKA--------EFVQNCSDLDDVIIFYRDGKYKVIRIAD------KVFVGKGVLHV 568

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            + +     TI      +      Y         ++R  ++   +              D
Sbjct: 569 QVFKKNDKRTIYNVVYRDGKTGPYY---------IKRFNVTSITR--------------D 605

Query: 683 EILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +   V   T  + I   T    G+     I+ +     +        ++       S+ I
Sbjct: 606 KEYDVTLGTPGSKINYFTANPNGEAELIKIT-LDPNPDKKKQ-----NIFMERDFASILI 659

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A          +  +S +    S           D +        R       +  I
Sbjct: 660 KGRAAKGNLLTKESIHRISLKSHGHSTLGGRKVWFDPDVNRINYEDHGRYLGEFSDQDSI 719

Query: 801 LTVSEKG 807
           L + + G
Sbjct: 720 LVILKNG 726


>gi|327314054|ref|YP_004329491.1| DNA gyrase/topoisomerase IV subunit A [Prevotella denticola F0289]
 gi|326944941|gb|AEA20826.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella denticola F0289]
          Length = 992

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 159/787 (20%), Positives = 290/787 (36%), Gaps = 110/787 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 129 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 184

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 185 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 239

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ D  V 
Sbjct: 240 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICDAAVG 298

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   +  L         PDFPTG  I       + Y  G+   V++  + +E    D +
Sbjct: 299 CLRGEEFHLY--------PDFPTGGSID-----VSKYNDGQRGGVLKVRARVE--KLDSK 343

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+    +++ E I + V + ++  I  + D +  +   + + L  G S+D  +
Sbjct: 344 TLVIREVPFTKTASSLQESITKAVEKGKLK-IRKVEDMTASE-VEIQLHLTPGTSSDKTI 401

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP   T+  +L+  V   + ++    +   ++  ++ 
Sbjct: 402 DALYAFTDCEINISPNCCVIEDNKPRFLTVSDVLRNSVEHTKALLKMELEIRKHELEEQL 461

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I +   D +             +    + + +  ++      +D         
Sbjct: 462 FYNSLERIFIE--DRIY------------KERKFETARSLDEVVAF---VDSKLEPYKKT 504

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+R+ R+    +D     +  +  EI E   I      ++ +  + 
Sbjct: 505 FVREVTRDDILRLLEIRMQRILKFNKDKADELIRKIKAEIAE---IDKDLGEMVRVTIEW 561

Query: 505 LLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++      RRT I      +  +     E                L + R     
Sbjct: 562 FTHLKEKYGKDHLRRTEIKNFDTIVAAKVVDANEK---------------LYIDRQAGFI 606

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           G G              +   S    V+ F   G     ++        +      +  +
Sbjct: 607 GTGLKKA--------EFVQNCSDLDDVIIFYRDGKYKVIRIAD------KVFVGKGVLHV 652

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            + +     TI      +      Y         ++R  ++   +              D
Sbjct: 653 QVFKKNDKRTIYNVVYRDGKTGPYY---------IKRFNVTSITR--------------D 689

Query: 683 EILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
           +   V   T  + I   T    G+     I+ +     R        ++        + I
Sbjct: 690 KEYDVTLGTPGSRICYFTANPNGEAELIKIT-LDPNPDRKKQ-----NIFMERDFAGILI 743

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
              A          +  +S +    S           D                  +  I
Sbjct: 744 KGRAAKGNLLTKESIHRISLKSHGHSTLGGRKVWFDPDVKRLNYEEHGLFLGEFSDQDSI 803

Query: 801 LTVSEKG 807
           L V + G
Sbjct: 804 LVVLKNG 810


>gi|46019120|emb|CAE52024.1| gyrase subunit A [Bacillus licheniformis]
          Length = 212

 Score =  341 bits (874), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 132/212 (62%), Positives = 170/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K + 
Sbjct: 1   VIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+D
Sbjct: 61  EILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVID 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV  NPDI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +   + IE+TS
Sbjct: 121 GVLAVSKNPDITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLPAKAQIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +  I++TEIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKPVIIITEIPYQVNKARLIEKIADLVRDKK 212


>gi|282880747|ref|ZP_06289446.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
 gi|281305379|gb|EFA97440.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella timonensis CRIS
           5C-B1]
          Length = 906

 Score =  341 bits (874), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 164/790 (20%), Positives = 293/790 (37%), Gaps = 116/790 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 101 HPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T D++ +YDG  +EP+ L A++P +L  G  GIAVG+++ I  HNL E+    + 
Sbjct: 156 -FNPKTTDWQLSYDGRNKEPITLPAKFPLLLTQGAEGIAVGLSSKILPHNLNEICQAAIH 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +      L         PDFPTG  I         Y  G+  G++ +R          D
Sbjct: 215 YLKGEPFTLY--------PDFPTGGSID-----VEKYNDGQRGGTLKVRAKIE----KLD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ EIP+      +++ I + + + +I       D++      + + L  G S+D 
Sbjct: 258 NKTLVIKEIPFSKTTTTLIDSILKAIDKGKIKARK--VDDNTAAEVEIQVHLSPGISSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY ++  +   S N   +   KP   T+  +L+  V     ++ +  +   N    
Sbjct: 316 TIDALYAFSDCEINISPNCCVIEDNKPVFLTVSDVLRHSVDSTMGLLRKELEIRRN---- 371

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
              +L  L  A      +   I      E A+           DI   +  +DD      
Sbjct: 372 --ELLEQLFFASLEKIFIEERIYKDKKFEEAK-----------DIDAAVAHVDDRLEPFK 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++      +LE+++ R+    +D   + +     EIKE   I    + +  +  
Sbjct: 419 PHFIREVTRDDILRLLEIKMHRILKFNKDKANDFIVRTKAEIKE---IDHDLAHMTDVTI 475

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                ++ +   + PR T I         +     E +        Y+ R          
Sbjct: 476 NWFEFIQTKYGKEHPRLTEIRSFDTIEATKVVEANEKL--------YINRQ--------- 518

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +G  G  ++ +     +   S    ++ F   G     +V          +     N
Sbjct: 519 ---EGFVGTGLKKD---EFVCNCSDIDDIIIFYRDGKYKIIRVAD--------KIFVGKN 564

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           ++ +   ++      +        +           ++R  +++F +             
Sbjct: 565 VIHVQVFKKNDKRTTYNVVYKDGKSGIYF-------IKRFNVTNFTR------------- 604

Query: 681 RDEILSVETCTQENDILLTTK--LGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVIS 737
            D+   +      + I+  T    G+     I+        R     + I + K      
Sbjct: 605 -DKEYDLTQGKPNSRIVYFTANPNGEAEVIKITLEPDPSKPR-----QNIFIEKD--FSD 656

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + I   +          +  +  +    S           D +        R       +
Sbjct: 657 IMIKSRSAKGNIVSKKPIHRIGLKSHGHSTLGGRKVWFDPDVNRINYEEHGRYLGEFNDD 716

Query: 798 QFILTVSEKG 807
             IL V + G
Sbjct: 717 DSILVVLDNG 726


>gi|255010001|ref|ZP_05282127.1| DNA topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313147794|ref|ZP_07809987.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
 gi|313136561|gb|EFR53921.1| topoisomerase IV subunit A [Bacteroides fragilis 3_1_12]
          Length = 882

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 165/733 (22%), Positives = 293/733 (39%), Gaps = 102/733 (13%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
             +         +T   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    +
Sbjct: 17  PADSHNESIKHQLTGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---D 73

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAA 127
            +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA
Sbjct: 74  GRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAA 128

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RY E RL K A  ++      T +++ +YDG  +EP+ L  ++P +L  G  GIAVG++
Sbjct: 129 PRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLS 186

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR-- 245
           + I  HN  E+ D  ++ + N +  L         PDF TG  I       + Y  G   
Sbjct: 187 SKILPHNFNELCDASISYLRNEEFKLY--------PDFQTGGSID-----VSKYNDGERG 233

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           G++ IR   +      D + + +TEIPY     ++++ I + V + +I       D++  
Sbjct: 234 GAVKIRSKIN----KVDNKTLAITEIPYGRTTTSVIDSILKAVDKGKIKIRK--VDDNTA 287

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+      
Sbjct: 288 ANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLRKSADNT 347

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             ++ +  +   ++ ++  H      I +       +    S + + A   + +R     
Sbjct: 348 LSLLRQELEIKKDELQESLHFASLEKIFIEERIYKDKEFEQSKDMDAACAHIDERLTP-- 405

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                            S     +++     ++E+++ R+     D     +  +  +I 
Sbjct: 406 ---------------FYSQFIREVTKEDILRLMEIKMGRILKFNSDKAEEAIARMNEDIA 450

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           E  + L++   ++    Q    +KD+   + PRRT +         +     E       
Sbjct: 451 EINNHLAN---IVEYTIQWYRMLKDKYGKNFPRRTELRNFDTIEAAKVVEANE------- 500

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
                        +      +G  G  ++ +     +   S    V+ F   G       
Sbjct: 501 -------------KLYINREEGFIGTSLKKD---EFVACCSDIDDVIIFYRDGRYMV--- 541

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
              P+   +  GK +I  +++ +     TI      + +    Y         ++R  ++
Sbjct: 542 --TPVADKKFVGKNVI-YVNVFKKNDKRTIYNVAYRDGAEGTHY---------IKRFAVT 589

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR-------FPISAIRVF 716
             ++         K DSR    S     +   I +T K    VR       F    IR  
Sbjct: 590 SIVRDREYDVTQGKPDSRISYFSANPNGEAEIIKVTLKPNPRVRRIIFERDFSEVTIRS- 648

Query: 717 AGRNSVGVRGISL 729
             R S GV    L
Sbjct: 649 --RQSQGVILTRL 659


>gi|46019108|emb|CAE52018.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 212

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 128/212 (60%), Positives = 171/212 (80%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L D+ KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++
Sbjct: 61  EILRDITKDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIE 120

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS
Sbjct: 121 GVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETS 180

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
             +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 181 SGKERIIVTELPYQVNKARLIEKIADLVRDKK 212


>gi|308450488|ref|XP_003088314.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
 gi|308248035|gb|EFO91987.1| hypothetical protein CRE_15839 [Caenorhabditis remanei]
          Length = 875

 Score =  340 bits (872), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 96/175 (54%), Positives = 126/175 (72%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++  I  V +  EMQ SYL YA++VI+GRA+PD+RDGLKPVHRR+++ M   G   +K +
Sbjct: 374 QQNAIDQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPDKAF 433

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            KC R+ G+VMG++HPHG+ A+YD+L R+ Q WSLR  L  GQGNFGS   D  AA RYT
Sbjct: 434 SKCTRVIGDVMGQFHPHGDTAVYDSLVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYT 493

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           E ++   A  ++ D+ +DTVDF+ NYDG  QEP VL AR+PN+LVNG  GIAVGM
Sbjct: 494 ETKMSPLAMEMVRDIDEDTVDFQDNYDGRTQEPTVLTARFPNLLVNGSVGIAVGM 548



 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 106/367 (28%), Positives = 174/367 (47%), Gaps = 62/367 (16%)

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           G +KR  +  YR Q RGGKG     +R +D V   F+ +TH  +LFF++ G VY+ K + 
Sbjct: 547 GMIKRTRIDNYRTQHRGGKGVKDAALRADDIVEHFFVTTTHHWLLFFTNTGRVYRAKTYE 606

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P G   A+G+ L N+L+L   E +T I+   E E    + ++V AT+ G V++  L+++
Sbjct: 607 VPEGGRDAKGQHLANLLALAPDESVTQILDLREFE---ADRFLVLATRDGLVKKTALTEY 663

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVG 723
                 G IA+KL   DE++S      ++D+LL +K G  VRF  S   +R   GR++ G
Sbjct: 664 DTNRTGGIIAIKLRDEDELVSALIAESDDDVLLISKHGMSVRFTASDQALRPM-GRSTSG 722

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
           VRG++   GDQ++  + +                                          
Sbjct: 723 VRGMNFRDGDQLLQASRITEGG-------------------------------------- 744

Query: 784 NISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVA 843
                          ++  V+E G+ KRT+  ++R+ NR G GI+   + +    G LV 
Sbjct: 745 ---------------YVFVVTEGGYAKRTAVDEYRVQNRGGFGIKVAKLDEA--RGDLVG 787

Query: 844 VFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            F V++ D+++ V   G ++R  V E+    R T GVV     + +R++ + R  E  + 
Sbjct: 788 GFIVDEGDEVLAVLASGKVVRSNVAEVPAKGRNTMGVVFARFPERDRIIGIARNTERGLD 847

Query: 904 D-EAEST 909
           D EAES 
Sbjct: 848 DAEAESA 854



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 89/237 (37%), Gaps = 15/237 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ Y   R GG     + +RDED +    I  +   VL  S  G   +  
Sbjct: 650 TRDGLVKKTALTEYDTNRTGG--IIAIKLRDEDELVSALIAESDDDVLLISKHGMSVRFT 707

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                +  P  R  + +  ++   G+++                YV   T+ G  +R  +
Sbjct: 708 ASDQAL-RPMGRSTSGVRGMNFRDGDQLLQASRIT------EGGYVFVVTEGGYAKRTAV 760

Query: 663 SDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            ++ ++   G   +K+   DE    ++      + +++L     G+ VR  ++ +    G
Sbjct: 761 DEY-RVQNRGGFGIKVAKLDEARGDLVGGFIVDEGDEVLAVLASGKVVRSNVAEV-PAKG 818

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
           RN++GV      + D++I +A       D  E        +        + +E  + 
Sbjct: 819 RNTMGVVFARFPERDRIIGIARNTERGLDDAEAESAAGEPAETDAAEHAEDKESLNE 875


>gi|300772555|ref|ZP_07082425.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760858|gb|EFK57684.1| DNA topoisomerase 4 subunit A [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 907

 Score =  340 bits (871), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 127/522 (24%), Positives = 232/522 (44%), Gaps = 52/522 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E +   + E+     ++ IT   +N +L YA  VIL RA+P + DG KPV RRIL  + +
Sbjct: 13  EELTPQENEQTSN--TIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKE 70

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD- 121
           M    + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    
Sbjct: 71  MD---DGRYNKVANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTT 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +      +T +++ +YDG  +EPV L  ++P +L  G  G
Sbjct: 123 GDSAAAPRYIEGRLSKFALEVT--FNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEG 180

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG+AT I  HN  E++DG + V++    ++         PDF TG +        +AY
Sbjct: 181 IAVGLATKIMPHNFNELIDGSIQVLNGERPNIL--------PDFLTGGMADC-----SAY 227

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G+    IR  + IE+   D++ + +TEIP+      ++E +       +        +
Sbjct: 228 NEGQRGGKIRVRAKIEE--RDKKTLAITEIPFGTTTGGLIESVVAA--NDKGKIKIKKIE 283

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++  +   +++ L  G S DV ++ LY +T+ +   S N   +   +P   ++  +L   
Sbjct: 284 DNTAENVEIIVHLAPGISPDVTIDALYAFTACEVSISPNTCVIKNDRPHFMSVNDVLIEN 343

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               + ++ +     L       H    +  +      +   +   P+ E          
Sbjct: 344 TKNTKNLLKQ----ELEIKLHDLH--EKIFFSTLLKIFIQEGMYKHPDYEN--------- 388

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
             + D   ++ ++++            +     + +++  ++ +T         ++ +L 
Sbjct: 389 --SGDFDTVVQVLNELFTPFFELFYRPIEPEDYKRLIDKPMSSITRFDVKKADEQMAALE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIV 521
            EI     +  +  +L          ++D+      RRT + 
Sbjct: 447 EEI---KTVKRNLRQLTEYAIAWFERLRDKYGKGRERRTELR 485


>gi|189462865|ref|ZP_03011650.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
 gi|189430481|gb|EDU99465.1| hypothetical protein BACCOP_03565 [Bacteroides coprocola DSM 17136]
          Length = 879

 Score =  339 bits (870), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 172/825 (20%), Positives = 308/825 (37%), Gaps = 123/825 (14%)

Query: 1   MTEHIIS------SDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDL 45
           M+E I        SD+E       V   DE          QN +L YA  VIL RA+P +
Sbjct: 1   MSEDIFDKNDIQSSDKEAHSDYKPVDQGDETVKHQLSGMYQNWFLDYASYVILERAVPHI 60

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q   
Sbjct: 61  NDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ--- 113

Query: 106 LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EP
Sbjct: 114 -KDLLIDCQGNWGNILTGDDAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGRNREP 170

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           V L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L         PD
Sbjct: 171 VTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDAAIAYLHGEEFHLY--------PD 222

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           F TG  I       + Y  G    V+R  + I  +  D + + ++EIPY    +++++ I
Sbjct: 223 FQTGGSID-----VSRYNDGERGGVVRVRAKI--SKIDNKTLCISEIPYGKTTSSLIDSI 275

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            + + + +I       D++      +++ L  G S+D  L+ LY +T  +   S N   +
Sbjct: 276 LKAIEKGKIKVRK--VDDNTADKVEILVHLAPGVSSDKTLDALYAFTDCEVNISPNCCVI 333

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +  KP   ++  +L+  V     ++ +      N+  +  H      I +       +  
Sbjct: 334 DNKKPHFLSVSVVLRKSVDNTLSLLRQELNIQRNETLETLHFASLEKIFIEERIYKDKQF 393

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
             + N + A   + +R                            +++     ++E+++AR
Sbjct: 394 EQAENMDAACEHIDERLTP-----------------FYPQFVREVTKEDILKLMEIKMAR 436

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVE 522
           +    +D     +  L  +I+E   I +  + +          +K++   + PRRT I  
Sbjct: 437 ILKFNKDKADEFITKLKADIEE---IDNHLAHITEYTIDWYTRIKEKYGKNFPRRTEIRN 493

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
               +  +     E                    +      +G  G  ++ +     +  
Sbjct: 494 FDTIVATKVAEANE--------------------KLYINREEGFIGTGLKKD---EYICN 530

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            S    V+ F   G     +V          +    +NI   N    I  ++     E  
Sbjct: 531 CSDIDDVIIFYKDGKYKIVRVSDK---LFVGKNILYVNIFKKNDKRTIYNVIYRDGKEGF 587

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                         ++R  ++  I+              D    V   T  + I+  T  
Sbjct: 588 H------------YIKRFNVTSMIR--------------DREYDVTQGTPGSKIVYFTAN 621

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                   + +     R +  ++   L       ++ I              +  +S ++
Sbjct: 622 PNG----EAEVIKVTLRPNPRIK--KLIFEKDFSTINIKGRQSMGNLLTKYEVHKISLKQ 675

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           R  S          +D          +        + IL V + G
Sbjct: 676 RGGSTLGGRKVWFDHDVLRLNYDGRGQYLGEFQSGESILVVHKNG 720


>gi|281426196|ref|ZP_06257109.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
 gi|281399772|gb|EFB30603.1| DNA topoisomerase 4 subunit A [Prevotella oris F0302]
          Length = 978

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 153/712 (21%), Positives = 273/712 (38%), Gaps = 94/712 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 119 KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 174

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 175 HPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 229

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ D  + 
Sbjct: 230 -FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIK 288

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   D  L         PDFPTG  I       + Y  G+   V++  + IE    D +
Sbjct: 289 YLRGEDFQLY--------PDFPTGGAID-----VSKYNDGQRGGVLKVRAKIE--KLDNK 333

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ EIP+      +++ I + + + +I       D++      + + L  G S+D  +
Sbjct: 334 TLVIREIPFSKTTTTLIDSILKAIDKGKIKAKR--VDDNTAAEVEIQVHLAPGVSSDKTM 391

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY ++  +   S N   +   KP   T+  +L+  V     ++ +  +        R 
Sbjct: 392 DALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVDRTMGLLRKELQIR------RG 445

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
            +L  L  A      + + I      E A           +D+ + +  +D        D
Sbjct: 446 ELLEQLFFASLERIFIEQRIYKEKKFEQA-----------ADMNEAVAFVDLKLTPFKPD 494

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      ++E+++ R+    +D     +  +  E+ E   I      +  +    
Sbjct: 495 FIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAE---IEHDLEHMTDVTINW 551

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            + +K++   + PR T I         +     + + +     G++              
Sbjct: 552 FMFIKNKYGNEHPRHTEIRSFDTIDSAKVVEANQKLYINR-QEGFIGTGLKKD------- 603

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                            +   S    ++ F   G     KV          +      I+
Sbjct: 604 ---------------EFVCNCSDIDDIIIFYKNGKYKIIKVAD--------KIFVGKGII 640

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L   ++      +          Y          +R  ++   +       A    S+ 
Sbjct: 641 WLQVFKKNDKRTIYNVVYKDGREGYYYM-------KRFNVTSMTRDREYDLTAGTPGSKV 693

Query: 683 EILSVETCTQENDILLTT----KLGQCVRFPISAI-RVF-AGRNSVGVRGIS 728
              +     +   I +      K  +   F      +V    R + GV    
Sbjct: 694 NYFTANPNGEAEIIKVVLEPDPKKKRQNIFLERDFSKVMIKSRGAKGVILTK 745


>gi|315607502|ref|ZP_07882497.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
 gi|315250685|gb|EFU30679.1| DNA topoisomerase 4 subunit A [Prevotella buccae ATCC 33574]
          Length = 912

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 161/744 (21%), Positives = 288/744 (38%), Gaps = 113/744 (15%)

Query: 3   EHIISSDEEEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           E+     E+       V+         ++   QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 17  ENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKPVQ 76

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q    + LLI+ 
Sbjct: 77  RRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLIDC 128

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T D++ +YDG  +EP+ L A++P
Sbjct: 129 QGNWGNILTGDRAAAPRYIEARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPAKFP 186

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ +  HNL E+ D  +  +   +  +         PDFPTG  I 
Sbjct: 187 LLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRIY--------PDFPTGGAID 238

Query: 233 GRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
                 + Y  G+  G++ +R          D + + V EIPY    A +++ I + V +
Sbjct: 239 -----VSKYNDGQRGGALKVRAKIE----KVDNKTLAVREIPYSKTTATLIDSITKAVEK 289

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I       +++      ++I L  G S+D  ++ LY ++  +   S N   +   KP 
Sbjct: 290 GKIKARK--IEDNTAAEVEILIHLAPGVSSDKTMDALYAFSDCEINISPNCCVIEDNKPG 347

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T+  +L+  V     ++ +  +   N       +L  L  A      +   I      
Sbjct: 348 FLTVSDVLRHSVDRTMGLLRKELQIRRN------ELLEQLFFASLERIFIEERIYKERKF 401

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           ETA+            + + I  +D+       D    ++      ++E+++ R+    +
Sbjct: 402 ETAKT-----------MDEAIAFVDEKLTPFKPDFIREVTRDDILRLMEIKMQRILKFNK 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDME 528
           D     +  +  E+ E   I    + +  +       +K++   + PRRT I        
Sbjct: 451 DKADELIAKIKAEVAE---IDKDLAHMTDVTVNWFEFIKNKYGKEHPRRTEIRNFDTIEA 507

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                  + +        Y+ R             +G  G  ++ +     +   S    
Sbjct: 508 TTVVEANQKL--------YINRQ------------EGFVGTGLKKD---EFVCNCSDLDD 544

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLY 647
           ++ F   G     +V          +     NIL +   ++     +            Y
Sbjct: 545 IIIFYKDGKFKVVRVAD--------KIFVGKNILWVQVFKKNDKRTIYNCVYRDGRQGAY 596

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTT-----K 701
                    ++R  ++   +         +      ++        E +++  T     K
Sbjct: 597 --------YIKRFNMTAMTRDREYDLT--QGTPGSRVMYFTANPNGEAEVIKVTLDPDPK 646

Query: 702 LGQCVRFPISAIRV--FAGRNSVG 723
             +   F           GR + G
Sbjct: 647 KKRQNIFLEKDFSEIAIKGRGAKG 670


>gi|37999000|dbj|BAD00070.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999008|dbj|BAD00074.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999010|dbj|BAD00075.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999012|dbj|BAD00076.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999030|dbj|BAD00085.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|62084060|dbj|BAD91437.1| DNA topoisomerase subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  339 bits (870), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 121/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A 
Sbjct: 61  VMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|326799067|ref|YP_004316886.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
 gi|326549831|gb|ADZ78216.1| DNA topoisomerase (ATP-hydrolyzing) [Sphingobacterium sp. 21]
          Length = 902

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 136/531 (25%), Positives = 240/531 (45%), Gaps = 55/531 (10%)

Query: 1   MTEHIISSD-----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M+E   +++     +E      ++ I+   +N +L YA  VIL RA+P + DGLKPV RR
Sbjct: 1   MSEETDNNELSGNNDEALSHNQTIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL  + +M    + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG
Sbjct: 61  ILHSLKEMD---DGRFNKAANVIGNTM-KYHPHGDASIGDAMVQIGQ----KNLLIDCQG 112

Query: 116 NFGSVD-GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G    GD  AA RY E RL K A+ ++     DT +++ +YDG  +EPV L  ++P +
Sbjct: 113 NWGDPTTGDSAAAPRYIEGRLSKFANDVV--FNPDTTEWQLSYDGRNREPVTLPVKFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG+AT I  HN  E++DG + V+     +L         PDFPTG +    
Sbjct: 171 LAQGAEGIAVGLATKIMPHNFVELLDGSIEVLRGGRPNLV--------PDFPTGGLAD-- 220

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               +AY  G     ++  + IE+   D++ + +TEIPY      +++ +  +    +  
Sbjct: 221 ---VSAYNEGMRGGKVKVRARIEE--RDKKTLAITEIPYGTTTGGLIDSV--IAANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      +V+ L  G S DV ++ LY +T  +   S N   +   KP   ++
Sbjct: 274 IKIKKIEDNTAATVEIVVHLAPGISPDVTIDALYAFTDCEVSISPNTCVIRDDKPHFMSV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L       + ++ +  +  LN       +L  +  +      +   +   P+ E A 
Sbjct: 334 NDVLIENTKHTKGLLKQELEIRLN------ELLEKIFFSSLLKIFIQEGMYKHPDYENA- 386

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                      + + ++D+++             +     + +++  ++ +T        
Sbjct: 387 ----------GNFEIVVDVLNRLFTPFFDRFYREILPEDYKKLIDKPMSSITRFDVKKAD 436

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEG 523
            ++ +L  EIKE      +   L          +KD+      RRT I   
Sbjct: 437 EQMKALEDEIKEVKY---NLKHLTDYAIAWFQKLKDKYGKGRERRTEIRIF 484


>gi|124365597|gb|ABN09827.1| gyrase subunit A [Clostridium difficile]
 gi|124365599|gb|ABN09828.1| gyrase subunit A [Clostridium difficile]
          Length = 154

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 122/154 (79%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ Y+++VI GRA+PD+RDGLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHP
Sbjct: 1   SYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+Y A+ RMAQD+S R LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ 
Sbjct: 61  HGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIE 120

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           K+TVDF+PN+D S +EP VL ARYPN+LVNG  G
Sbjct: 121 KETVDFKPNFDESLKEPSVLPARYPNLLVNGSNG 154


>gi|288924619|ref|ZP_06418556.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
 gi|288338406|gb|EFC76755.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella buccae D17]
          Length = 912

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 160/744 (21%), Positives = 288/744 (38%), Gaps = 113/744 (15%)

Query: 3   EHIISSDEEEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           E+     E+       V+         ++   QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 17  ENNEEVTEDTHSDYNPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKPVQ 76

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q    + LLI+ 
Sbjct: 77  RRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLIDC 128

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T D++ +YDG  +EP+ L A++P
Sbjct: 129 QGNWGNILTGDRAAAPRYIEARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPAKFP 186

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ +  HNL E+ D  +  +   +  +         PDFPTG  I 
Sbjct: 187 LLLAQGAEGIAVGLSSKLLPHNLNEICDAAIKYLHGEEFRIY--------PDFPTGGAID 238

Query: 233 GRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
                 + Y  G+  G++ +R          D + + V EIPY    A +++ I + V +
Sbjct: 239 -----VSKYNDGQRGGALKVRAKIE----KVDNKTLAVREIPYSKTTATLIDSITKAVEK 289

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I       +++      ++I L  G S+D  ++ LY ++  +   S N   +   KP 
Sbjct: 290 GKIKARK--IEDNTAAEVEILIHLAPGVSSDKTMDALYAFSDCEINISPNCCVIEDNKPG 347

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T+  +L+  V     ++ +  +   N       +L  L  A      +   I      
Sbjct: 348 FLTVSDVLRHSVDRTMGLLRKELQIRRN------ELLEQLFFASLERIFIEERIYKERKF 401

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           ETA+            + + I  +D+       +    ++      ++E+++ R+    +
Sbjct: 402 ETAKT-----------MDEAIAFVDEKLTPFKPNFIREVTRDDILRLMEIKMQRILKFNK 450

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDME 528
           D     +  +  E+ E   I    + +  +       +K++   + PRRT I        
Sbjct: 451 DKADELIAKIKAEVAE---IDKDLAHMTDVTVNWFEFIKNKYGKEHPRRTEIRNFDTIEA 507

Query: 529 DEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                  + +        Y+ R             +G  G  ++ +     +   S    
Sbjct: 508 TTVVEANQKL--------YINRQ------------EGFVGTGLKKD---EFVCNCSDLDD 544

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER-ITTIMPFPEDESSWNNLY 647
           ++ F   G     +V          +     NIL +   ++     +            Y
Sbjct: 545 IIIFYKDGKFKVVRVAD--------KIFVGKNILWVQVFKKNDKRTIYNCVYRDGRQGAY 596

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC-TQENDILLTT-----K 701
                    ++R  ++   +         +      ++        E +++  T     K
Sbjct: 597 --------YIKRFNMTAMTRDREYDLT--QGTPGSRVMYFTANPNGEAEVIKVTLDPDPK 646

Query: 702 LGQCVRFPISAIRV--FAGRNSVG 723
             +   F           GR + G
Sbjct: 647 KKRQNIFLEKDFSEIAIKGRGAKG 670


>gi|170676381|gb|ACB30378.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 157

 Score =  339 bits (868), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 100/157 (63%), Positives = 125/157 (79%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPVHRR+LF M ++  +WN+ Y K ARI G+V+GKYHPH + A+YD + RMA
Sbjct: 1   LPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGKYHPHCDIAVYDTIVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+SLR +L++GQGNFGSVDGD  AA RYTE R+ K  H LL D+ K+TVDF PNYDGS 
Sbjct: 61  QDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDKETVDFGPNYDGSE 120

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
            +P++L +R PN+L+NG  GIAVGMATNIP HNL EV
Sbjct: 121 MQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 157


>gi|299141868|ref|ZP_07035003.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
 gi|298576719|gb|EFI48590.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunitA)
           [Prevotella oris C735]
          Length = 903

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 153/712 (21%), Positives = 273/712 (38%), Gaps = 94/712 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 44  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 99

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 100 HPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ D  + 
Sbjct: 155 -FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDAAIK 213

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   D  L         PDFPTG  I       + Y  G+   V++  + IE    D +
Sbjct: 214 YLRGEDFQLY--------PDFPTGGAID-----VSKYNDGQRGGVLKVRAKIE--KLDNK 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ EIP+      +++ I + + + +I       D++      + + L  G S+D  +
Sbjct: 259 TLVIREIPFSKTTTTLIDSILKAIDKGKIKAKR--VDDNTAAEVEIQVHLAPGVSSDKTM 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY ++  +   S N   +   KP   T+  +L+  V     ++ +  +        R 
Sbjct: 317 DALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHGVDRTMGLLRKELQIR------RG 370

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
            +L  L  A      + + I      E A           +D+ + +  +D        D
Sbjct: 371 ELLEQLFFASLERIFIEQRIYKEKKFEQA-----------ADMNEAVAFVDLKLTPFKPD 419

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      ++E+++ R+    +D     +  +  E+ E   I      +  +    
Sbjct: 420 FIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAE---IEHDLEHMTDVTINW 476

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
            + +K++   + PR T I         +     + + +     G++              
Sbjct: 477 FMFIKNKYGNEHPRHTEIRSFDTIDSAKVVEANQKLYINR-QEGFIGTGLKKD------- 528

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                            +   S    ++ F   G     KV          +      I+
Sbjct: 529 ---------------EFVCNCSDIDDIIIFYKNGKYKIIKVAD--------KIFVGKGII 565

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L   ++      +          Y          +R  ++   +       A    S+ 
Sbjct: 566 WLQVFKKNDKRTIYNVVYKDGREGYYYM-------KRFNVTSMTRDREYDLTAGTPGSKV 618

Query: 683 EILSVETCTQENDILLTT----KLGQCVRFPISAI-RVF-AGRNSVGVRGIS 728
              +     +   I +      K  +   F      +V    R + GV    
Sbjct: 619 NYFTANPNGEAEIIKVVLEPDPKKKRQNIFLERDFSKVMIKSRGAKGVILTK 670


>gi|307566200|ref|ZP_07628651.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
 gi|307345093|gb|EFN90479.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella amnii CRIS
           21A-A]
          Length = 905

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 153/716 (21%), Positives = 278/716 (38%), Gaps = 102/716 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P++ DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL E+    ++
Sbjct: 156 -FNPKTTNWQQSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNEICSAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D  +         PDF TG  I       + Y  G+  G++ IR          D
Sbjct: 215 YLKGKDFSIY--------PDFATGGSID-----VSKYNNGQRGGTLKIRAKIE----KLD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ E+P+    +++ E I + + + +I  I  + D +  +   + + L    S+D 
Sbjct: 258 HKTLVIREVPFTKTASSIQESITKAIEKGKIK-IRKVEDMTASE-VEIHLHLSPNTSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   +   KP   T+  +LK  V    E++ +  +   ++  +
Sbjct: 316 TIDALYAFTDCEISISPNCCVIENNKPHFLTISDVLKHSVDHTRELLKQELEIRKHELEE 375

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           +        I +                   R     +   A D+K+++  +D       
Sbjct: 376 QLFYNSLERIFIE-----------------ERIYKEHKFETAKDLKEVVAFVDSKIEPFK 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++      +LE+++ R+    +D   + +  +  EI E   I    S +  +  
Sbjct: 419 KHFIREVTREDIIHLLEIKMQRILKFNKDKADDVIIKIKAEIAE---IDKDLSEMTRVTI 475

Query: 503 QELLSVKDELDTP--RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +    +K +      R+T I      +  +     E + +  S  G++            
Sbjct: 476 EWFKHLKGKYGKEHIRKTEIKNFDTIIASKVIDANEKLYIDRS-SGFIGTGLKKS----- 529

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                              +   S    ++ F   G     +V          +     N
Sbjct: 530 -----------------EFVQNCSDLDDIIIFYRDGKYKVIRVAD--------KVFVGKN 564

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           IL L   ++        +  + +N +Y    T    ++R  ++                 
Sbjct: 565 ILHLQVFKK-------NDKRTIYNTVYKDGKTGIYYIKRFNVTSIT--RDKEYDITTGTP 615

Query: 681 RDEILSVETC-TQENDILLTTKLGQC-----VRFPISAIR--VFAGRNSVGVRGIS 728
              ++        E +I+  T            F           GR++ G     
Sbjct: 616 GSRVVYFTANANGEAEIIKVTLNPNFDKKKQNIFLERDFSQIAIKGRDAKGNILTK 671


>gi|120435835|ref|YP_861521.1| DNA topoisomerase IV subunit A [Gramella forsetii KT0803]
 gi|117577985|emb|CAL66454.1| topoisomerase IV subunit A [Gramella forsetii KT0803]
          Length = 880

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 161/814 (19%), Positives = 306/814 (37%), Gaps = 111/814 (13%)

Query: 1   MTEHIISSDEEE-EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M E+   + +E+ E     + +T   ++ +L YA  VIL RA+P + DG KPV RRI+  
Sbjct: 1   MEENQEGAQDEQFESKEELIKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHS 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + +LI+ QGN+G+
Sbjct: 61  MKDLD---DGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDILIDTQGNWGN 112

Query: 120 V-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           +  GD  AA RY E RL K A  +L        +++ +YDG  QEPV L  ++P +L  G
Sbjct: 113 ILTGDRAAAPRYIEARLSKFALEVLY--SPKLTEWQLSYDGRKQEPVNLPVKFPMLLAQG 170

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIAVG++T    HN  E++D  +  +      +         PDFPTG +        
Sbjct: 171 AEGIAVGLSTRFLPHNFNELIDASILHLKGKTFKI--------FPDFPTGGIAD-----V 217

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y+ G+    +R  + I     D+  +V+ EIPY  N +++++ I  L    +      
Sbjct: 218 SNYSDGKRGGRVRIRAKI--NQLDKNTLVINEIPYGTNTSSLIDSI--LKANDKGKIKIK 273

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
             +++      ++I L    S D  ++ LY +T  ++  +     +  +KP    +  +L
Sbjct: 274 KIEDNTAAEVEILIHLPNNMSPDRTIDALYAFTQCENSLAPLGCVIIDHKPIFLGVSEVL 333

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
           +        ++ R  +  L++  ++ H      I +   + + R I      +       
Sbjct: 334 RRSTDHTLHLLKRELEIKLDELEEQWHFASLERIFIE--NRIYRDIEEEETWQ------- 384

Query: 419 QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
                      +I  ID             ++E     + E+R+ R++    D  + +++
Sbjct: 385 ----------GVIQAIDKGLKPHTKHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKID 434

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVRE 536
           +L  +I +    L +   L+         +K +  T   R+T +                
Sbjct: 435 ALEADIAQVKHHLDN---LIDFAIDYFKKLKKDYGTGKERKTELR----------LFEDI 481

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLG 596
           +    V     ++   L V RA+   G                +   S    V+ F++ G
Sbjct: 482 EATKVV-----IRNTKLYVNRAEGFVGTSLKK--------DEYVTECSDIDDVICFTADG 528

Query: 597 FVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGN 656
            +   KV      +    GK +I++    + ++ T       D  + N            
Sbjct: 529 KMMVTKVD-----TKTFIGKDIIHVAIFKKKDKRTIYNMVYRDGKAGNT----------Y 573

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V+R  ++   +              D   S+    +++ +L  +          + +   
Sbjct: 574 VKRFSVTSVTR--------------DREYSLGQGKKDSKVLYFSANPNG----EAEVITV 615

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R    +R   +        + I              +K +  +   +S          
Sbjct: 616 LLRQVGSIR--KVKFDLDFADILIKGRKVKGNIVSKYSVKRIEMKEEGVSTLKPRRIWFD 673

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                               E  +L +++ G  K
Sbjct: 674 ETVKRLNVDERGELLGEFRGEDRLLIITQDGIVK 707


>gi|91217686|ref|ZP_01254643.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
 gi|91184190|gb|EAS70576.1| DNA topoisomerase IV subunit A [Psychroflexus torquis ATCC 700755]
          Length = 863

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 166/818 (20%), Positives = 301/818 (36%), Gaps = 115/818 (14%)

Query: 1   MTEHIISSDEEEE-----KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M++ +  + E +E         SV +T   Q  +L YA  VIL RA+P + DG KPVHRR
Sbjct: 1   MSDDLDLNPESQEPFDPTAKDESVKVTGMFQEWFLDYASYVILERAVPAIEDGFKPVHRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL  M  +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + +LI+ QG
Sbjct: 61  ILHSMKDLD---DGRYTKVANIVGHTM-QYHPHGDASIGDAIVQIGQ----KDILIDTQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GD  AA RY E RL K A  ++      T +++ +YDG  QEPV L  ++P V
Sbjct: 113 NWGNILTGDRAAASRYIEARLSKFALEVV--FNPKTTEWQISYDGRKQEPVNLPVKFPMV 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T I  HN  E++D  +  ++     +         PDF TG +    
Sbjct: 171 LAQGAEGIAVGLSTKILPHNFIELIDASIKHLEGKRFTI--------FPDFATGGIAD-- 220

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               + Y  G     IR  + IE    D+  +V+ EIPY  N + +++ I  L    +  
Sbjct: 221 ---VSNYNDGLRGGKIRVRATIE--VKDKNLLVINEIPYSTNTSTLIDSI--LKANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      +++ L    S D  ++ L+ +T+ +   S     +   KP    +
Sbjct: 274 IKIKKIEDNTSSDVEILVHLPNNISPDKTIDALFAFTNCEVSISPLSCVIIDDKPHFLGM 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       E++    +  L +  ++ H      I +     + R I      +   
Sbjct: 334 SELLRMSTENTVELLKTELEIKLGELEEQWHFASLEKIFIE--KRIYRDIEEEETWD--- 388

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                          +ID ID             ++      + E+R+ R++    D   
Sbjct: 389 --------------GVIDAIDRGLQPHIKHLKRDITRDDISRLTEIRIKRISKFDLDKAD 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDC 532
            ++ +L  +I     +      L+         +K++      R+TRI            
Sbjct: 435 QKIEALEADI---EAVKQDLDHLIDYSINYFKMLKEKYGKGKERKTRIQLFEDI------ 485

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                            +V +   +      +G  G  M+ +++VTD    S    ++ F
Sbjct: 486 --------------EASKVVIRNTKLYVNRIEGFIGTSMKKDEYVTD---CSDIDDIICF 528

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G +             + +     NIL +   ++                      T
Sbjct: 529 TEDGTMMV--------SKVEGKTFIGKNILYVGIFKKKDKR------------------T 562

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            +  + ++  + F  + R    ++    RD+  S+        +L  +          + 
Sbjct: 563 IYNLIYKDGKAGFSHMKRFAVTSIT---RDKAYSMGNDKPGTKVLYFSCNPNG----EAE 615

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +     R   G++   L        +AI              +K +  +   +S      
Sbjct: 616 LVTVFLRQKKGLK--RLKFDIDFSDLAIKGRNVKGNLVSKMPIKSVDLKEEGVSTLKPRK 673

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                   E  +L + + G  K
Sbjct: 674 IWFDEAVRRLNVDERGELLGAFKGEDRLLIIRQNGIAK 711


>gi|182411928|ref|YP_001816994.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
 gi|177839142|gb|ACB73394.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutus terrae PB90-1]
          Length = 708

 Score =  338 bits (867), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 140/609 (22%), Positives = 234/609 (38%), Gaps = 62/609 (10%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +    +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + ++ K A 
Sbjct: 62  EEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKLAN 118

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           I G  M ++HPHG+A+I  AL  + Q    R  L+E QGNFG++  GD  AA RY E RL
Sbjct: 119 IVGATM-RFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARL 173

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L      T  ++ +YDG  +EPV L A++P VL+ G  GIAVG+AT I  HN 
Sbjct: 174 TAFAKDVL--FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNF 231

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGV 253
            ++    +  +      +         PDFPTG V        + Y  G   G + IR  
Sbjct: 232 NDLCRAAINHLQGKTFRIY--------PDFPTGGVAD-----FSEYNDGERGGKVKIRAK 278

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIE 313
             I      +  + +TE+P+     +++E I  L    +        D++      +++ 
Sbjct: 279 IEI----RSKYLLAITELPFGSTTESLIESI--LAANAKGKIKIRHVDDNTADAVEILVH 332

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           L +G+  + ++ QLY +T+ Q+  S     +   KP    +  ILK  V   + ++ R  
Sbjct: 333 LPQGSDPEKLIQQLYVFTACQTNLSPAACVIEDDKPHFLGVREILKRSVDKTKALLKREL 392

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +    +   + H    L       + + R I  S   +                  ++D 
Sbjct: 393 EIRQAELEQQWH-WDSLERIF-IEERIYRRIEKSKTWQ-----------------SVLDE 433

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           I +            +++     + E+R+ R++   R      +  +  E++E     ++
Sbjct: 434 IREGLQPFLKQLRRPVTDDDITRLTEIRIKRISAYNRFQADEAIKKIEAELRETK---AN 490

Query: 494 RSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRV 551
              L          ++++      RRT   E       E     + + V           
Sbjct: 491 LKALTAYAVAWFEQLQEKYGKGLKRRTSYDEIEQINAAEVVSANQRLYVNREDGFIGLNW 550

Query: 552 PLSVYRAQRRGGKGR----SGVVMRDEDFVTDLFIVSTHTSVLFFSSLG--FVYKEKVWR 605
               Y                  ++       +F+         F   G    Y      
Sbjct: 551 RQHEYVQDCTILDSVVCLMRDGSLKVSKVAEKVFMGRDIIHCAVFPKDGDPNFYTMVYQD 610

Query: 606 LPIGSPQAR 614
              G   A+
Sbjct: 611 KESGKAFAK 619


>gi|265765085|ref|ZP_06093360.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
 gi|263254469|gb|EEZ25903.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_16]
          Length = 851

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 165/716 (23%), Positives = 290/716 (40%), Gaps = 102/716 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 58

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV- 113

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  ++
Sbjct: 114 -FNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            + N +  L         PDF TG  I       + Y  G   G++ IR   +      D
Sbjct: 173 YLRNEEFKLY--------PDFQTGGSID-----VSKYNDGERGGAVKIRSKIN----KVD 215

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY     ++++ I + V + +I       D++      +++ L  G S+D 
Sbjct: 216 NKTLAITEIPYGRTTTSVIDSILKAVDKGKIKIRK--VDDNTAANVEILVHLAPGTSSDK 273

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP   T+  +LK        ++ +  +   ++ ++
Sbjct: 274 TIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLKKSADNTLSLLRQELEIKKDELQE 333

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +       +    S + + A                  + ID       
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAAC-----------------EHIDRRLTPFY 376

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
           S     +++     ++E+++ R+     D     +  +  +I E  + L++   ++    
Sbjct: 377 SQFIREVTKDDILRLMEIKMGRILKFNSDKAEEAIARMNEDIAEINNHLAN---IVEYTI 433

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           Q    +K++   + PRRT +         +     E                    +   
Sbjct: 434 QWYRMLKEKYGKNFPRRTELRNFDTIEAAKVVEANE--------------------KLYI 473

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +G  G  ++ +     +   S    V+ F   G          P+   +  GK +I 
Sbjct: 474 NREEGFIGTSLKKD---EFVACCSDIDDVIIFYRDGRYMV-----TPVADKKFVGKNVI- 524

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            +++ +     TI      + +    Y         ++R  ++  ++         K DS
Sbjct: 525 YVNVFKKNDKRTIYNVAYRDGAEGTHY---------IKRFAVTSIVRDREYDVTQGKPDS 575

Query: 681 RDEILSVETCTQENDILLTTKLGQCVR-------FPISAIRVFAGRNSVGVRGISL 729
           R    S     +   I +T K    VR       F    IR    R S GV    L
Sbjct: 576 RISYFSANPNGEAEIIKVTLKPNPRVRRIIFERDFSEVTIRS---RQSQGVILTRL 628


>gi|163784373|ref|ZP_02179268.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880356|gb|EDP73965.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 633

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 185/730 (25%), Positives = 322/730 (44%), Gaps = 114/730 (15%)

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGR 234
            NG  GIAVG++T+IP HN  EV +    + + P+  ++ L + I+GPDFPTG +     
Sbjct: 1   CNGATGIAVGLSTSIPPHNFTEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILTTSH 60

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
             +   Y  GRGSI ++G + IEK +G+R +IV+ EIPYQVNK  ++++IAELVR  +  
Sbjct: 61  KDMVKIYEDGRGSITLKGKARIEKLAGNRHRIVIYEIPYQVNKVELIKRIAELVRTGKEK 120

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I+DLRDESDR G R+++ELKR A+ + +L +LY+ T LQ    +N+  L G +P+  +L
Sbjct: 121 GISDLRDESDRDGIRIIVELKREANPEKVLKKLYQRTQLQKSIPINLTVLVGKQPKTLSL 180

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L  F+  R EV+ +RT Y L KA  R H++ GL  A+ N D V+ I+R S +   A+
Sbjct: 181 KEVLLEFIKHRIEVITKRTLYELQKAEKRLHIIEGLLKALENADRVIEIVRGSKDSAEAK 240

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                                             LS+ Q +AIL++RL+R T L  + + 
Sbjct: 241 --------------------------FKLTSEFQLSDTQAQAILDMRLSRFTSLESEKLY 274

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
           NE + L  +I+   +ILSS    + +   E+  + ++    R+T +    L+ ++     
Sbjct: 275 NEADELRKQIERYREILSSEQEKIKVFINEIDELLEKYGDDRKTIV----LEKDEGKLTF 330

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR------DEDFVTDLFIVSTHTS 588
            E+ ++ V   G +    +     +    +  + V+          D++  +  + +   
Sbjct: 331 EENYIIAVLSNGKIINYKIDNPEDREEKERIFNKVINEITSLILPGDYLVSIQEIKSSQP 390

Query: 589 VLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYV 648
           + F ++ G         LP G  + +                   +     +S      +
Sbjct: 391 IAFITNDGRCIWSLAADLPKGEGKLKYI-------------DENKIVGTAFKSEGEEDRL 437

Query: 649 VFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRF 708
              TK+G ++R    D    +++ +I + L   DEI+        + I + T     + F
Sbjct: 438 FLLTKNGIIKRMTFEDIFYKSQNQQI-IPLQEDDEIVMAFADDHPSYIAIYTAKADLLIF 496

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
             + IRV  G  + GV GI L +GD V    +V   +                       
Sbjct: 497 ERNQIRV-TGAKAKGVEGIDLDEGDYVKGGFLVNSEE----------------------- 532

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                         +ILT+++ G  K  +  +F I  R+ KG+ 
Sbjct: 533 ------------------------------YILTITKNGQCKLVNKEEFPIKKRAQKGLM 562

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFSTA 886
           A  +    +   L     VN  D++IL +  G + ++ +++  I +A R   G  + +  
Sbjct: 563 AVKLQ---KGDELNICTSVNIEDEVILSTSGGKVFKMIIDDKRIPVAKRTAMGDKLLN-- 617

Query: 887 KDERVVSVER 896
             E ++ + +
Sbjct: 618 --EEIIWLAK 625



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 88/254 (34%), Gaps = 26/254 (10%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           V  N++ + ++     +  + L+  +     +   +EN I+     G+ + + I      
Sbjct: 300 VFINEIDELLEKYGDDRKTIVLEKDE----GKLTFEENYIIAVLSNGKIINYKIDNPEDR 355

Query: 717 AGRNSVGVRGIS-----LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             +  +  + I+     +  GD ++S+  +  +              S    L  G+ + 
Sbjct: 356 EEKERIFNKVINEITSLILPGDYLVSIQEIKSSQPIAFITNDGRCIWSLAADLPKGEGKL 415

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD--FRISNRSGKGIRA 829
               +N        SE        +E  +  +++ G  KR +  D  ++  N+       
Sbjct: 416 KYIDENKIVGTAFKSE-------GEEDRLFLLTKNGIIKRMTFEDIFYKSQNQ------- 461

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +  + E   +V  F  +    I + + K  L+    N+IR+     KGV      + +
Sbjct: 462 -QIIPLQEDDEIVMAFADDHPSYIAIYTAKADLLIFERNQIRVTGAKAKGVEGIDLDEGD 520

Query: 890 RVVSVERIRESEIV 903
            V     +   E +
Sbjct: 521 YVKGGFLVNSEEYI 534


>gi|53711702|ref|YP_097694.1| DNA topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60679941|ref|YP_210085.1| DNA topoisomerase IV subunit A [Bacteroides fragilis NCTC 9343]
 gi|253564240|ref|ZP_04841697.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|52214567|dbj|BAD47160.1| topoisomerase IV subunit A [Bacteroides fragilis YCH46]
 gi|60491375|emb|CAH06123.1| putative topoisomerase [Bacteroides fragilis NCTC 9343]
 gi|251948016|gb|EES88298.1| topoisomerase IV subunit A [Bacteroides sp. 3_2_5]
 gi|301161466|emb|CBW21006.1| putative topoisomerase [Bacteroides fragilis 638R]
          Length = 851

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 164/716 (22%), Positives = 290/716 (40%), Gaps = 102/716 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 58

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LL++ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLVDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV- 113

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  ++
Sbjct: 114 -FNPKTTEWKLSYDGRNKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            + N +  L         PDF TG  I       + Y  G   G++ IR   +      D
Sbjct: 173 YLRNEEFKLY--------PDFQTGGSID-----VSKYNDGERGGAVKIRSKIN----KVD 215

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY     ++++ I + V + +I       D++      +++ L  G S+D 
Sbjct: 216 NKTLAITEIPYGRTTTSVIDSILKAVDKGKIKIRK--VDDNTAANVEILVHLAPGTSSDK 273

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP   T+  +L+        ++ +  +   ++ ++
Sbjct: 274 TIDALYAFTDCEVSISPNCCVIDDQKPHFLTISHVLRKSADNTLSLLRQELEIKKDELQE 333

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +       +    S + + A                  + ID       
Sbjct: 334 NLHFASLEKIFIEERIYKDKEFEQSKDMDAAC-----------------EHIDRRLTPFY 376

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
           S     +++     ++E+++ R+     D     +  +  +I E  + L++   ++    
Sbjct: 377 SQFIREVTKDDILRLMEIKMGRILKFNSDKAEEAIARMNEDIAEINNHLAN---IVEYTI 433

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           Q    +K++   + PRRT +         +     E                    +   
Sbjct: 434 QWYRMLKEKYGKNFPRRTELRNFDTIEAAKVVEANE--------------------KLYI 473

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +G  G  ++ +     +   S    V+ F   G          P+   +  GK +I 
Sbjct: 474 NREEGFIGTSLKKD---EFVACCSDIDDVIIFYRDGRYMV-----TPVADKKFVGKNVI- 524

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
            +++ +     TI      + +    Y         ++R  ++  ++         K DS
Sbjct: 525 YVNVFKKNDKRTIYNVAYRDGAEGTHY---------IKRFAVTSIVRDREYDVTQGKPDS 575

Query: 681 RDEILSVETCTQENDILLTTKLGQCVR-------FPISAIRVFAGRNSVGVRGISL 729
           R    S     +   I +T K    VR       F    IR    R S GV    L
Sbjct: 576 RISYFSANPNGEAEIIKVTLKPNPRVRRIIFERDFSEVTIRS---RQSQGVILTRL 628


>gi|323344338|ref|ZP_08084563.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
 gi|323094465|gb|EFZ37041.1| DNA topoisomerase 4 subunit A [Prevotella oralis ATCC 33269]
          Length = 905

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 156/795 (19%), Positives = 280/795 (35%), Gaps = 126/795 (15%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 101 HPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+ + I  HNL ++ D  ++
Sbjct: 156 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLTSKILPHNLNDICDAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D            PDFPTG  I       + Y  G+  G++ +R          D
Sbjct: 215 YLKGED--------FCIYPDFPTGGSID-----VSKYNDGQRGGTLKVRAKIE----KLD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ EIP+      +++ I + + + +I       D++      + + L  G S+D 
Sbjct: 258 NKTLVIKEIPFSKTTTTLIDSILKAIDKGKIKARK--VDDNTAAEVEIQVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY ++  +   S N   +   KP   T+  +L+  V     ++ +     +     
Sbjct: 316 TIDALYAFSDCEINISPNCCVIEDNKPCFLTVSDVLRHSVDSTMGLLRKELLIRMK---- 371

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
              +   L  A      +   I      E A+            +   +  ID       
Sbjct: 372 --ELNEQLFFASLEKIFIEERIYKDKKFEEAKN-----------MDAAVAHIDSRLEPFK 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++      ++E+++ R+    +D     +  +  EI    DI      +  +  
Sbjct: 419 PTFIREITRDDILRLMEIKMQRILKFNKDKADELIAKILAEI---KDIKHDLDHMTEVTI 475

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                +KD+   D PR T I         +     E                    +   
Sbjct: 476 SWFQFIKDKYGKDHPRLTEIKNFDTIEATKVVEANE--------------------KLYI 515

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +G  G  ++ +     +   S    ++ F   G     +V          +     N
Sbjct: 516 NRAEGFVGTGLKKD---EYICNCSDIDDIIIFYRDGKYKIIRVAD--------KIFVGKN 564

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           ++ +   ++      +          Y         ++R  ++             +   
Sbjct: 565 VIHVQVFKKNDRRTIYNVVYRDGKQGYYF-------IKRFNVTSMT--RDKEYDLTQGTP 615

Query: 681 RDEILSVETC-TQENDILLTT-----KLGQCVRFPISAIRV--FAGRNSVGVRGISLAKG 732
             +++        E +++  T     K  +   F           GR S G         
Sbjct: 616 GSKVMYFTANPNGEAEVIKITLDPDPKKKKQNIFLEKDFSEIIIKGRASKG--------- 666

Query: 733 DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQE 792
                                 +  +  +    S           D +        R   
Sbjct: 667 ---------------NLLTKRNIHRIGLKSHGHSTLGGRKVWFDPDVNRINYEDHGRFLG 711

Query: 793 LKLKEQFILTVSEKG 807
               E  IL V + G
Sbjct: 712 EFNDEDSILVVLDNG 726


>gi|167752022|ref|ZP_02424149.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
 gi|167660263|gb|EDS04393.1| hypothetical protein ALIPUT_00264 [Alistipes putredinis DSM 17216]
          Length = 918

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 143/585 (24%), Positives = 249/585 (42%), Gaps = 77/585 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P ++DGLKPV RRIL  M       + +Y K A I G+ M +Y
Sbjct: 59  RNWFLDYASYVILERAVPHVQDGLKPVQRRILHAM---KAVDDGRYNKVANIVGQTM-QY 114

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 115 HPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFALDVV- 169

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
              K T ++  +YDG  +EPV L  ++P +L  G  GIAVG+A+ I  HN  E+++  +A
Sbjct: 170 -FNKKTTEWMRSYDGRNEEPVTLPVKFPLLLAQGADGIAVGLASKILPHNFIELINAAIA 228

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D         +  PDFPT  +I       + Y  G   G++ +R          D
Sbjct: 229 HLQGRD--------FVLYPDFPTAGMID-----VSRYNDGLRGGTVKVRARIS----KID 271

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +  + +TEIPY     ++ + I +    ++        D++  +   +++++    S+D 
Sbjct: 272 KRTLAITEIPYTTTTESIKDSIVKA--NEKGKIKIRKVDDNTAEKVEIIVQVAPDESSDK 329

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   + N   +   KP    +  IL+       E++    +  LN+  +
Sbjct: 330 TIDALYAFTDCEVSIAPNACVICDDKPHFLGVSEILRRSAEHTRELLKMELEIRLNELNE 389

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +  ++++ ++I      E A   + +     + +               
Sbjct: 390 AWHAASLERIFI--VNKLYQLIEGCKTREEAYAAVGKGLEPFTKVLR------------- 434

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++    + + EL+  R++    D   NE+  +  +I +    L   + L     
Sbjct: 435 ----RAVTTEDIQRLTELKFIRISRYDSDKADNEIRQIEEDIAQTQHHL---AHLTDYTI 487

Query: 503 QELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                ++D+      RRT +          +    E   V V++        L V R + 
Sbjct: 488 AYYERIRDKYGKGRERRTELR---------EFDSIEATKVAVTN------AKLYVDRVEG 532

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             G G      +       +   S    V+ F+  G     KV  
Sbjct: 533 FFGIG------KSMKDSEFVCDCSDIDDVIVFTKDGRYVITKVSD 571


>gi|327406037|ref|YP_004346875.1| DNA topoisomerase [Fluviicola taffensis DSM 16823]
 gi|327321545|gb|AEA46037.1| DNA topoisomerase (ATP-hydrolyzing) [Fluviicola taffensis DSM
           16823]
          Length = 911

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 132/552 (23%), Positives = 226/552 (40%), Gaps = 55/552 (9%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++         ++ I    ++   +N +L YA  VIL RA+P L DG KPV RRIL  M 
Sbjct: 29  SDSSPFEKNHVDENIIP--LSGLYENWFLDYASYVILERAVPSLHDGFKPVQRRILHSMK 86

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-V 120
           ++    + +Y K A + G  M KYHPHG+A+I DAL ++ Q    + LLI+ QGN+G+ +
Sbjct: 87  ELD---DGRYNKVANVIGNTM-KYHPHGDASIGDALVQLGQ----KELLIDCQGNWGNTL 138

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  ++      T  +  +YDG  +EP  L  ++P +L  G  
Sbjct: 139 TGDGAAAPRYIEARLSKFASHVV--FNPKTTSWLLSYDGRNKEPDNLPVKFPILLAQGAE 196

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMA  I  HN  E++D  +  +    I++         PDF  G +          
Sbjct: 197 GIAVGMACKILPHNFIELIDQSINHLRGKKIEI--------FPDFLNGGMADFTN----- 243

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     +R  + I     D + +++ EIP+     +++E + +     +        
Sbjct: 244 YNDGLRGGKVRVRAKI--KKVDNKTLIINEIPFGCTTTSLIESVIKA--NDKGKIKIKKI 299

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           +++      +VI L  G S D  ++ LY +T  +   S N   ++G  P    +  ILK 
Sbjct: 300 EDNTAADAEIVIHLAPGVSPDKTIDALYAFTDCEVSISPNASVIDGDTPRFMGVTEILKV 359

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                  ++ +  +  L +   + H               +  I         R E+   
Sbjct: 360 NTDNTVTLLRKELEIRLAELESQWHFS------------TLEKIF-------IREEMYID 400

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               SD + L   +              + +   + + ++ + R+T    D   + +  L
Sbjct: 401 FKLYSDKEGLYQYMYKRFEKFKKQFVREIIDEDLQRLTQIPMIRITRFDSDKADDLIAKL 460

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDM 538
             E++E    L +   L+    +    +K        RRT +         +  I    +
Sbjct: 461 EAEMEEVKKHLGN---LIEYAIEYYKDLKKRFGAGKERRTEMKVFDNIAASKVIIANRKL 517

Query: 539 VVTVSHLGYVKR 550
            V +   G++  
Sbjct: 518 YVDI-EEGFIGW 528


>gi|256819286|ref|YP_003140565.1| DNA topoisomerase IV subunit A [Capnocytophaga ochracea DSM 7271]
 gi|256580869|gb|ACU92004.1| DNA topoisomerase (ATP-hydrolyzing) [Capnocytophaga ochracea DSM
           7271]
          Length = 864

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 163/811 (20%), Positives = 311/811 (38%), Gaps = 108/811 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++   +   +   I  V  T   Q+ +L YA  VIL RA+P + DG KPV RRI+  +
Sbjct: 1   MEDNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSL 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 59  KELD---DGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNI 110

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  ++        +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 LTGDDAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGT 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  +A + N   +L         PDFPT  ++       +
Sbjct: 169 EGIAVGLSTKILPHNFIELIEASIAYLKNKPFELY--------PDFPTAGIMD-----VS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  +  D+  + +TEIP+     ++++ I +   + +I      
Sbjct: 216 GYNDGARGGRVRVRAKI--SQLDKSTLCITEIPFTTTTTSLIDSILKANEKGKIKIKK-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D++      +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 272 VDDNTAANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RT  LL +  +     + +    A+L+++             R E+  
Sbjct: 332 RSTD--------RTVSLLKQELEIELSELEMQWHSASLEKI-----------FIREEMYI 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
              N +D + L + +         D    +++     + ++ + R+T          +  
Sbjct: 373 DFKNYTDRESLYEYLYQRFEPFKKDLIREITDDDLAKLTQIPMIRITRFDSYKADENILK 432

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I+E  + L++   L+         +K      R  +    +      D I    +V
Sbjct: 433 IEADIEEVKNHLAN---LIDYAISHFERLKKTYGKGRERKTEMRVF-----DTIEATKVV 484

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  +         L V RA+   G G        +         S    V+ F+  G +Y
Sbjct: 485 VRNTK--------LYVNRAEGFVGTGLRKDEYVGD--------CSDIDDVIVFTESGAMY 528

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV                NI+ +   ++        +  + +N +Y    T    ++R
Sbjct: 529 VTKVSDKQYIEK--------NIIHVAVFKKD-------DKRTVYNMIYKDGQTGFSYIKR 573

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++   +              D+   +    +E+ +L  T          + +     R
Sbjct: 574 FNVTGITR--------------DKKYELIPQHKESRVLYFTANPNG----EAEVVTVNLR 615

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               +R   L          I              +K +  + + +S          N  
Sbjct: 616 QLGTLR--KLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVSTLKPRKIWFDNIV 673

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                            +  +L ++++G  K
Sbjct: 674 KRLNTEERGTLLGAFKGDDRMLLITKEGVVK 704


>gi|189464414|ref|ZP_03013199.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
 gi|189438204|gb|EDV07189.1| hypothetical protein BACINT_00755 [Bacteroides intestinalis DSM
           17393]
          Length = 892

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 165/817 (20%), Positives = 290/817 (35%), Gaps = 117/817 (14%)

Query: 3   EHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           E  +    E           D           QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 13  EKNLPEGNEGHSDYKPADTKDVKAKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQ 72

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ 
Sbjct: 73  RRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDC 124

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  ++P
Sbjct: 125 QGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFP 182

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ I  HN  E+ D  +  +   +  L         PDF TG  I 
Sbjct: 183 LLLAQGVEGIAVGLSSKILPHNFNELCDASIRYLHEEEFKLY--------PDFQTGGSID 234

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
                 + Y  G     +R  + IE    D + + + EIPY    A + + I +   + +
Sbjct: 235 -----VSKYNDGERGGAVRVRAKIE--KIDNKTLAIKEIPYGKTVANVCDSIVKASEKGK 287

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I         S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP   
Sbjct: 288 IKIKKVEDLTSG--NVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFL 345

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T+  +L+  V     ++ +  +   ++  +  H      I +       +    + + + 
Sbjct: 346 TVSDVLRKSVDNTLSLLRQELEIRKDEILESLHFASLEKIFIEERIYKDKEFEQAKDMDA 405

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   + +R                            +++     ++E+++ R+     D 
Sbjct: 406 ACAHIDERLTP-----------------YYPRFIREVTKEDILKLMEIKMGRILKFNSDK 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDE 530
               +  +  +I+E    L++   ++       L +K++   + PRRT +         +
Sbjct: 449 AEELIARMKADIEEIDHHLAN---IVEYTVDWYLMLKNKYGKNFPRRTELRNFDTIEASK 505

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E                    +      +G  G  ++ +     L   S+   V+
Sbjct: 506 VVEANE--------------------KLYINREEGFIGTGLKKD---EFLCNCSSLDDVI 542

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F   G      V          +     N+   N    I         +      Y   
Sbjct: 543 IFFRDGRYLVTPVSDK---KFVGKNILYANVFKKNDKRTIY---NVVYRDGKEGTQY--- 593

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
                 ++R  ++  I+              D    V   T ++ I   T          
Sbjct: 594 ------IKRFAVTSIIR--------------DREYDVTQGTPDSRITYFTANPNG----E 629

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +     + +  VR I   +    IS  I              +  ++ ++R  S    
Sbjct: 630 AEVIKVTLKPNPRVRRIIFEEDFSDIS--IKGRQARGNILTKLPVHKIALKQRGGSTLGG 687

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  D                  E  IL V + G
Sbjct: 688 RKVWFDRDVLRLNYDGRGEYLGEFQSEDSILVVHDNG 724


>gi|326336678|ref|ZP_08202846.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325691148|gb|EGD33119.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 868

 Score =  338 bits (866), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 161/805 (20%), Positives = 302/805 (37%), Gaps = 111/805 (13%)

Query: 3   EHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           E  +SS+  +     +++ I+   +  +L YA  VIL RA+P L DG KPV RRI+  M 
Sbjct: 8   EQNLSSETPQGDSQETITRISGMYETWFLDYASYVILERAVPALEDGFKPVQRRIMHSMD 67

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
           ++    + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QG++G++ 
Sbjct: 68  EL---EDGRYNKVANIVGNTM-KYHPHGDASIGDAIIQLGQ----KQLLIDTQGSWGNIL 119

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  +L        +++ +YDG   EPV L  ++P +L  G  
Sbjct: 120 TGDDAAAPRYIEARLSKFALDVL--FSPKVTEWQKSYDGRNDEPVHLPVKFPLLLAQGAE 177

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++T I  HN  E++D  V  ++    +L         PDFPT  ++         
Sbjct: 178 GIAVGLSTKILPHNFNELIDASVLYLEGKPFELY--------PDFPTAGIMD-----AAT 224

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     IR  + I     D+  +V+TEIP+    +++++ I +   + +I  +    
Sbjct: 225 YNDGMRGGRIRVRARI--AQRDKATLVITEIPFGTTTSSLIDSILKANEKGKIKILK--V 280

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D++  +   +++ L +G S D  ++ LY +T  +   S     +   KP    +  IL+ 
Sbjct: 281 DDNTAKDVEILVHLPKGISPDKTIDALYAFTDCELSISPLCCVIEDNKPHFIGVSDILRK 340

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                 E++ +  +  L+    + H                     S      R E+   
Sbjct: 341 STDRTVEILKKELEVKLDDLEQKWHN-------------------ASLEKIFIREEMYID 381

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
               +D + L   + +            +++     + ++ + R+T          L  +
Sbjct: 382 FKKYNDKESLFAYLYERFEPFKEQLLRPITDEDIDRLTQIPMIRITRYDTYKAEENLLKI 441

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDM 538
             +I+   + L++   L+        +++ +      R+T+I                  
Sbjct: 442 EADIEVVKNHLAN---LISFTIDYFRNLQKKYGKGKERKTQIRPFD-------------- 484

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
             T+     V R      +      +G  G  ++ +++V D    S    ++ F++ G +
Sbjct: 485 --TIEATKVVVRNL----KLYVNREEGFVGTSLKKDEYVAD---CSDIDDIIVFTADGKM 535

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
              KV        ++     I  + + +     T+        +    Y+   T  G +R
Sbjct: 536 IITKVTE------KSYVGKNIVHVGVFKKNDTRTVYNLVYRNGNDKISYIKRFTVTGIIR 589

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
                                  D+   V    +++ IL  +          + +     
Sbjct: 590 -----------------------DKEYDVIEPHKDSQILYFSANPNG----EAEVITIIL 622

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R +  V+   L        + I   A          +K +  + + IS            
Sbjct: 623 RQAGSVK--KLKWDINFADILIKGRASRGNIVTKYAIKRIELKEKGISTLKPRKIWYDPI 680

Query: 779 SSVEGNISEERCQELKLKEQFILTV 803
                             E  +L +
Sbjct: 681 VHRLNTEGRGELLGSFKGEDRLLLI 705


>gi|29602637|gb|AAO85705.1| GyrA [Campylobacter jejuni]
          Length = 170

 Score =  337 bits (865), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 100/170 (58%), Positives = 126/170 (74%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I  V I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK 
Sbjct: 1   DIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAK 120

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           + K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAV
Sbjct: 121 MSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAV 170


>gi|227537923|ref|ZP_03967972.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242225|gb|EEI92240.1| DNA topoisomerase IV subunit A [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 907

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 127/522 (24%), Positives = 232/522 (44%), Gaps = 52/522 (9%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E +   + E+     ++ IT   +N +L YA  VIL RA+P + DG KPV RRIL  + +
Sbjct: 13  EELTPQENEQTSN--TIPITGLYENWFLDYASYVILDRAVPHINDGFKPVQRRILHSLKE 70

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD- 121
           M    + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G    
Sbjct: 71  MD---DGRYNKAANVIGNTM-KYHPHGDASIGDAMVQLGQ----KNLLIDCQGNWGDPTT 122

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  +      +T +++ +YDG  +EPV L  ++P +L  G  G
Sbjct: 123 GDSAAAPRYIEGRLSKFALEV--AFNPETTEWQLSYDGRNKEPVTLPVKFPLLLAQGAEG 180

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG+AT I  HN  E++DG + V++    ++         PDF TG +        +AY
Sbjct: 181 IAVGLATKIMPHNFNELIDGSIQVLNGERPNIL--------PDFLTGGMADC-----SAY 227

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     IR  + IE+   D++ + +TEIP+      ++E +       +        +
Sbjct: 228 NEGMRGGKIRVRAKIEE--RDKKTLAITEIPFGTTTGGLIESVVAA--NDKGKIKIKKIE 283

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++  +   +++ L  G S DV ++ LY +T+ +   S N   +   +P   ++  +L   
Sbjct: 284 DNTAENVEIIVHLAPGISPDVTIDALYAFTACEVSISPNTCVIKNDRPHFMSVNDVLIEN 343

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               + ++ +     L       H    +  +      +   +   P+ E          
Sbjct: 344 TKNTKNLLKQ----ELEIKLHDLH--EKIFFSTLLKIFIQEGMYKHPDYEN--------- 388

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
             + D   ++ ++++            +     + +++  ++ +T         ++ +L 
Sbjct: 389 --SGDFDTVVQVLNELFTPFFELFYRPIEPEDYKRLIDKPMSSITRFDVKKADEQMAALE 446

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIV 521
            EI    ++  +  +L          ++D+      RRT + 
Sbjct: 447 EEI---KNVKRNLRQLTEYAIAWFERLRDKYGKGRERRTELR 485


>gi|317505289|ref|ZP_07963218.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
 gi|315663592|gb|EFV03330.1| DNA topoisomerase 4 subunit A [Prevotella salivae DSM 15606]
          Length = 903

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 154/712 (21%), Positives = 273/712 (38%), Gaps = 94/712 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 44  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 99

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 100 HPHGDASIGDALVQMGQ----KDLLVDCQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 154

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T D++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HNL E+ D  + 
Sbjct: 155 -FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEICDSAIK 213

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   D  L         PDFPTG  I       + Y  G+   V++  + IE    D +
Sbjct: 214 YLKGEDFQLY--------PDFPTGGAID-----VSKYNDGQRGGVLKVRAKIE--KLDNK 258

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ EIP+      +++ I + + + +I       D++      + + L  G S+D  +
Sbjct: 259 TLVIREIPFSKTTTTLIDSILKAIDKGKIKAKR--VDDNTAAEVEIQVHLAPGVSSDKTM 316

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY ++  +   S N   +   KP   T+  +L+  V     ++ +  +        R 
Sbjct: 317 DALYAFSDCEINLSPNCCVIEDNKPVFLTVSDVLRHGVDRTMGLLRKELQIR------RG 370

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
            +L  L  A      + + I      E A           +++ D I  +D        D
Sbjct: 371 ELLEQLFFASLERIFIEQRIYKEKKFEQA-----------ANMDDAIAFVDQKLTPFKPD 419

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      ++E+++ R+    +D     +  +  E+ E   I +  + +  +    
Sbjct: 420 FIREVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAE---IENDLNHMTDVTINW 476

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++   D PRRT I         +     + + +     G++              
Sbjct: 477 FTFIKNKYGKDHPRRTEIRSFDTIDSAKVVEANQKLYINR-QEGFIGTGLKKD------- 528

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
                            +   S    ++ F   G     KV          +      I+
Sbjct: 529 ---------------EFVCNCSDIDDIILFYKTGKYKIIKVAD--------KIFVGKGII 565

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L   +R      +        + Y          +R  ++   +            S+ 
Sbjct: 566 WLQVFKRNDKRTIYNVVYRDGRDGYYYM-------KRFNVTSMTRDREYDLTLGTPGSKV 618

Query: 683 EILSVETCTQENDILLTT----KLGQCVRFPISAIR--VFAGRNSVGVRGIS 728
              +     +   I +      K  +   F            R + GV    
Sbjct: 619 TYFTANPNGEAETIKVVLEPDPKKKRQNIFLERDFSKVNIKSRGAKGVILTK 670


>gi|281421903|ref|ZP_06252902.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
 gi|281404145|gb|EFB34825.1| DNA topoisomerase 4 subunit A [Prevotella copri DSM 18205]
          Length = 953

 Score =  337 bits (864), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 163/822 (19%), Positives = 303/822 (36%), Gaps = 110/822 (13%)

Query: 3   EHIISSDEEEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           +       E+      V+         ++   QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 33  DDNEEISTEKHSDYKPVNRFDASAVHHLSGMYQNWFLDYASYVILERAVPHIEDGLKPVQ 92

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q    + LLI+ 
Sbjct: 93  RRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLIDT 144

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T D++ +YDG  +EP+ L A++P
Sbjct: 145 QGNWGNILTGDRAAAPRYIEARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPAKFP 202

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ +  HN  E+ D  V  +      L         PDFPTG  I 
Sbjct: 203 LLLAQGAEGIAVGLSSKVLPHNFNEICDAAVHYLKGEPFQLY--------PDFPTGGAID 254

Query: 233 GRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
                 + Y  G+  G++ +R          D + +V++EIP+     ++++ I + V +
Sbjct: 255 -----VSKYNDGQRGGALKVRAKID----KLDNKTLVISEIPFSKTTGSLIDSITKAVEK 305

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I         S      +++ L  G S+D  ++ LY ++  +   S N   +   KP 
Sbjct: 306 GKIKARKVDDVTSA--NVEILVHLAPGTSSDKTMDALYAFSDCEINISPNCCVIEDNKPV 363

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T+  +L+  V     ++ +       +          L  +      +   I      
Sbjct: 364 FLTISDVLRHSVDRTMGLLRKELMIRKGELE------EQLFFSSLERIFIEERIYKERKF 417

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL-SEVQTRAILELRLARLTGLG 469
           E ++ +    ++  S ++   D +  +              E+    IL+L   ++  + 
Sbjct: 418 EQSKSQDEVVAFIDSKLEPFKDKLFTAEVDGKGMVEYAFHREITREDILKLLEIKMQRIL 477

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDM 527
           + +       L     E  +I +  + +  +       +K +   + PR+T I       
Sbjct: 478 KYNKDKADELLMKIKAELAEIENDLAHMTDVTINWFEYLKGKYGKNHPRKTEIRNFDTIE 537

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             +     + +        Y+ R             +G  G  ++ +     +   S   
Sbjct: 538 VTKVVEANQKL--------YINRQ------------EGFVGTGLKKD---EFVCNCSDLD 574

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++ F   G     KV           GK ++++    + ++ T       D    +   
Sbjct: 575 DIIIFYKDGKFKVTKVAD-----KIFVGKNILHVQVFKKNDKRTIYNCVYRDGKQGDY-- 627

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK--LGQC 705
                    ++R  ++   +              D++  +   T  + ++  T    G+ 
Sbjct: 628 --------FIKRFNVTAMTR--------------DKLYDITQGTPGSRVIYFTANPNGEA 665

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
                +       +     + I L K      + I   A          ++ +  +    
Sbjct: 666 EIIKCTMEPDLTKKR----QSIFLEKD--FSDILIKGRAAKGNLLTKRTIRRIGLKSHGH 719

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           S           D +        R       +  IL V + G
Sbjct: 720 STLGGRKVWFDPDVNRINYDENGRFLGEFNDDDSILVVLDNG 761


>gi|330466713|ref|YP_004404456.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
 gi|328809684|gb|AEB43856.1| DNA topoisomerase IV subunit A [Verrucosispora maris AB-18-032]
          Length = 1256

 Score =  337 bits (864), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 214/732 (29%), Positives = 316/732 (43%), Gaps = 104/732 (14%)

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            TE R+ + A  L+ +LG++TVD  PNYDGS  +P VL A +PN+LVNG  GIAVGMATN+
Sbjct: 564  TEARMSREAMLLVGELGEETVDVEPNYDGSLTQPTVLPAAFPNLLVNGTSGIAVGMATNM 623

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
              HNLGEVV     +I +P+  LD LME + GPD PTG ++LG   ++ AY TGRG + +
Sbjct: 624  IPHNLGEVVSAARWLIRHPNATLDKLMEFVPGPDLPTGGLLLGLDEVRRAYETGRGVVRM 683

Query: 251  RGVSH--IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRDESDR-Q 306
            RG       + S  R+ I V E+PY V    ++  I   V + KR+  IAD++D +DR  
Sbjct: 684  RGKVEIGPLEGSRGRQAITVVELPYGVGAEKVIAAITNEVTKTKRLTGIADVKDLTDREN 743

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
            G R+VIE K G +   +L  LYR T L+  F VN + L   +P    L  +L+ F+A R 
Sbjct: 744  GTRLVIECKVGVNPQALLADLYRLTPLEQSFGVNNLVLVDGQPRTLGLKALLEVFLAHRY 803

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            EVV RR+ Y   K ++R H++ GL IA+ ++D+VV++IR S + + A+  LMQ+      
Sbjct: 804  EVVTRRSAYRRRKRQERLHLVDGLLIALLDIDKVVKLIRASEDAQAAKDGLMQK------ 857

Query: 427  IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                  LSE+Q   IL+  L RLT   R ++  E   L  EI E
Sbjct: 858  --------------------FKLSEIQASYILDTPLRRLTKYDRLELEAEQEKLRAEIAE 897

Query: 487  CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV-------REDMV 539
               IL   + L  ++  EL +V  +   PRRT +V+G L                 +   
Sbjct: 898  LSTILDDENVLKKLVSDELAAVVKQFAAPRRTTLVDGDLKEVLAASAPAGPLEVADDPCQ 957

Query: 540  VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
            V +S  G V R             +GR        D V  +   +    VL  +S G  +
Sbjct: 958  VILSATGLVARTAAE----SEEAAEGRRRHGRVKHDAVRAVVHSTARGRVLLVTSAGRAF 1013

Query: 600  KEKVWRLPIGSPQ------ARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
            K  V  LP+   Q        G +   ++ L  GE +  + P     ++  +  +   T+
Sbjct: 1014 KVDVLPLPVLPEQAGTVSLRGGMSAAELVPLEPGESVVGLAPLG--PTAEGSPGLALGTR 1071

Query: 654  HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE-TCTQENDILLTTKLGQCVRFPISA 712
             G V+       +         + L   DE++           +   T     +RFP   
Sbjct: 1072 QGVVKVCAPDWPV--RSDEFEVIGLRDGDEVVGATWLTDGAESLAFLTSAASLLRFPAGT 1129

Query: 713  IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
            +R   G    G+ G++L  G QV+    V   D  + E                      
Sbjct: 1130 VRP-QGLKGGGMAGVALPDGAQVVYFGAVRTDDPQHGEP--------------------- 1167

Query: 773  TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF-GKRTSSYDFRISNRSGKGIRATD 831
                                        + V+  G   K T    +    R+  G+RA  
Sbjct: 1168 ----------------------------MVVTSTGATVKVTPFAAYPAKGRATGGVRAQR 1199

Query: 832  VSKINEIGALVA 843
              K  E   +VA
Sbjct: 1200 FLKG-ETDVVVA 1210



 Score =  243 bits (621), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 76/152 (50%), Positives = 97/152 (63%), Gaps = 16/152 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    +  E+ +SYL YA +VI  RA+PD RDGLKPVHRRIL+ M + G   ++ +VK 
Sbjct: 20  RVFDNPLVTEVSDSYLEYAFSVIHSRALPDARDGLKPVHRRILYAMYESGFRPDRAHVKS 79

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY---- 130
           AR+ G+VMG+YHPHG+ AIYDA+ RMAQD+SL + LI+G GNFGS D D PAA RY    
Sbjct: 80  ARVVGDVMGRYHPHGDTAIYDAMVRMAQDFSLNVPLIDGHGNFGSPD-DGPAAARYCVTG 138

Query: 131 -TECRLQ-----KAAHFLLDDLGKDT---VDF 153
            T  RL      +     L DL  D+   VDF
Sbjct: 139 DTRIRLADGSSPRIGE--LVDLAPDSEADVDF 168



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 76/271 (28%), Gaps = 28/271 (10%)

Query: 644  NNLYVVFATKHGNVRRNKLSDFIQI--NRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
            ++   V  +  G V R            R           D + +V   T    +LL T 
Sbjct: 953  DDPCQVILSATGLVARTAAESEEAAEGRRRHGRV----KHDAVRAVVHSTARGRVLLVTS 1008

Query: 702  LGQCVRF---PISAIRVFAGRNS-VGVRGIS------LAKGDQVISMAIVLHADADYDER 751
             G+  +    P+  +   AG  S  G  G+S      L  G+ V+ +A +          
Sbjct: 1009 AGRAFKVDVLPLPVLPEQAGTVSLRG--GMSAAELVPLEPGESVVGLAPLGPTAEGSPGL 1066

Query: 752  ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                +    +                       +          +    LT +      R
Sbjct: 1067 ALGTRQGVVKVCAPDWPVRSDEFEVIGLRDGDEVVGATWLTDGAESLAFLTSAASLL--R 1124

Query: 812  TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND----QIILVSDKGTLIR-VP 866
              +   R     G G+    +        +V    V  +D    + ++V+  G  ++  P
Sbjct: 1125 FPAGTVRPQGLKGGGMAGVALPDG---AQVVYFGAVRTDDPQHGEPMVVTSTGATVKVTP 1181

Query: 867  VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
                    RAT GV      K E  V V  I
Sbjct: 1182 FAAYPAKGRATGGVRAQRFLKGETDVVVAWI 1212


>gi|317474502|ref|ZP_07933776.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
 gi|316909183|gb|EFV30863.1| topoisomerase IV [Bacteroides eggerthii 1_2_48FAA]
          Length = 904

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 142/562 (25%), Positives = 244/562 (43%), Gaps = 69/562 (12%)

Query: 1   MTEHIISSDEEEEKGI---------------TSVSITDEM----QNSYLTYAINVILGRA 41
           M+E+     +E +K +                 V+I  ++    QN +L YA  VIL RA
Sbjct: 1   MSENFEGPKDELDKELPEGGEGHSDYKPADTNDVNIKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  V  + N +  L       
Sbjct: 171 NKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASVKYLHNEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G     +R  + IE    D + +V+ EIPY    A++
Sbjct: 225 --PDFQTGGNID-----VSKYNDGERGGAVRVRAKIE--KVDNKTLVIREIPYGKTVASV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I         S+     +++ L  G S+D  ++ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKIKKVEDLTSE--NVEILVHLAPGVSSDKTIDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK  V     ++ +  +   N+  +  H      I +      
Sbjct: 334 CCVIDEQKPHFLTVSDVLKKSVDNTLALLRQELEIRKNEILESLHFSSLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            +    + N + A   + +R                            +++     ++E+
Sbjct: 394 DKEFEQAKNMDAACEHIDERLTP-----------------YYPTFIREVTKEDILKLMEI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+     D     +  +  +I+E    L++   ++         +K++     PRRT
Sbjct: 437 KMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYGKGFPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVV 540
            +         +     E + +
Sbjct: 494 ELRNFDTIDSTKVVEANEKLYI 515


>gi|218131890|ref|ZP_03460694.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
 gi|217986193|gb|EEC52532.1| hypothetical protein BACEGG_03513 [Bacteroides eggerthii DSM 20697]
          Length = 904

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 142/562 (25%), Positives = 243/562 (43%), Gaps = 69/562 (12%)

Query: 1   MTEHIISSDEEEEKGI---------------TSVSITDEM----QNSYLTYAINVILGRA 41
           M+E+     +E +K +                 V+I  ++    QN +L YA  VIL RA
Sbjct: 1   MSENFEGPKDELDKELPEGGEGHSDYKPADTNDVNIKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHIMDGLKPVQRRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  V  + N +  L       
Sbjct: 171 NKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASVKYLHNEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAM 280
             PDF TG  I       + Y  G     +R  + IE    D + +V+ EIPY    A++
Sbjct: 225 --PDFQTGGNID-----VSKYNDGERGGAVRVRAKIE--KVDNKTLVIREIPYGKTVASV 275

Query: 281 LEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVN 340
            + I +   + +I         S      +++ L  G S+D  ++ LY +T  +   S N
Sbjct: 276 CDSIVKASEKGKIKIKKVEDLTSG--NVEILVHLAPGVSSDKTIDALYAFTDCEVSISPN 333

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
              ++  KP   T+  +LK  V     ++ +  +   N+  +  H      I +      
Sbjct: 334 CCVIDEQKPHFLTVSDVLKKSVDNTLALLRQELEIRKNEILESLHFSSLEKIFIEERIYK 393

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
            +    + N + A   + +R                            +++     ++E+
Sbjct: 394 DKEFEQAKNMDAACEHIDERLTP-----------------YYPTFIREVTKEDILKLMEI 436

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRT 518
           ++AR+     D     +  +  +I+E    L++   ++         +K++     PRRT
Sbjct: 437 KMARILKFNSDKAEELIARMKADIEEIDRHLAN---IVEYTVDWFRMLKEKYGKGFPRRT 493

Query: 519 RIVEGLLDMEDEDCIVREDMVV 540
            +         +     E + +
Sbjct: 494 ELRNFDTIDSTKVVEANEKLYI 515


>gi|288801298|ref|ZP_06406752.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
 gi|288331681|gb|EFC70165.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 299 str. F0039]
          Length = 906

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 151/709 (21%), Positives = 272/709 (38%), Gaps = 100/709 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           Q  +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  QGWFLAYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL + A  ++ 
Sbjct: 101 HPHGDASIGDALVQMGQ----KNLLIDMQGNWGNILTGDRAAAPRYIEARLSQFALDVV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  QEP+ L A++P +L  G  GIAVG+++ I  HN  E+    ++
Sbjct: 156 -FNPKTTNWQLSYDGRNQEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNPNEICQAAIS 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   +  L         PDFPTG  I       + Y  G   GSI +R          D
Sbjct: 215 YLRGEEFQLY--------PDFPTGGSID-----VSKYNDGLRGGSIKVRAKIE----KLD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ EIPY     ++++ I + + + +I       D++      + I L  G S+D 
Sbjct: 258 SKTLVIREIPYSKTTTSLIDSILKAIDKGKIKAKK--VDDNTAAEVEIQIHLASGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY ++  +   S N   +   KP   T+  +L   V     ++ +  +   +    
Sbjct: 316 TIDALYAFSDCEVNISPNCCVIEDQKPRFMTVSEVLCHSVDSTMGLLRKELQIRKD---- 371

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                  L+       E + I          R    ++   A+++   I  ID+      
Sbjct: 372 -----ELLSQLFFASLESIFI--------EERIYKDKKFEQAANVDAAIKHIDERLEPFK 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D    ++      +LE+++ R+    ++     +  +  EIK+    L   + ++ +  
Sbjct: 419 KDFIREITRDDILHLLEIKMQRILKFNKEKAEELIAKMKQEIKDIDYKL---AHMVDVTI 475

Query: 503 QELLSVKDEL-DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
           +    +K++      R   +     +E    +   + +      G++             
Sbjct: 476 EWFTFLKEKYGKDHHRLTEIRNFDTIEATKVVEANEKLYINRQDGFIGTSLKKD------ 529

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
                             +   S    ++ F   G     KV          +     N+
Sbjct: 530 ----------------EFVCNCSDIDDIIIFYKDGLYKIIKVAE--------KIFVGKNV 565

Query: 622 LSLNQGER-ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           L +   ++     +            Y         ++R  ++   +            S
Sbjct: 566 LHVQVFKKNDKRTIYNAVYRDGKKGPY--------YIKRFNVTSMTRERDYNLTNGTPHS 617

Query: 681 RDEILSVETCTQENDILL----TTKLGQCVRFPISAIR--VFAGRNSVG 723
           +    +     +   I +     +K G    F        +  GR + G
Sbjct: 618 KVVYFTANPNGEAEVIKVTLDPASKKGNI--FIEKDFSDILIKGRAAKG 664


>gi|256483424|gb|ACU81114.1| DNA gyrase subunit A [Bacillus sp. LL3]
          Length = 230

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 138/229 (60%), Positives = 180/229 (78%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ K
Sbjct: 1   GDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITK 60

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +N
Sbjct: 61  DTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSEN 120

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V
Sbjct: 121 PEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIV 180

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           TE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVIE+   
Sbjct: 181 TELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRVVIEIPLD 229


>gi|37999002|dbj|BAD00071.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999004|dbj|BAD00072.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
 gi|37999006|dbj|BAD00073.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae]
          Length = 176

 Score =  337 bits (863), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 120/175 (68%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A 
Sbjct: 61  VMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|295086380|emb|CBK67903.1| DNA topoisomerase IV subunit A [Bacteroides xylanisolvens XB1A]
          Length = 881

 Score =  337 bits (863), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 159/744 (21%), Positives = 283/744 (38%), Gaps = 100/744 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   EE          DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +L+       +++ +  +   N+  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACAHIDERLTP-----------------YYPKFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  E+ E   I +  + ++         +K++   + PRRT +      
Sbjct: 434 NSDKADELIARMKEEVAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTALKKD---EFVACCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK  +  +++ +     TI      +      
Sbjct: 528 DDVIIFFRDGKYIV-----TPVADKKFVGKN-VLYVNVFKKNDKRTIYNIAYRDGKEGTT 581

Query: 647 YVVFATKHGNVR-RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           YV        VR R                    + +  +   T      +         
Sbjct: 582 YVKRFAVTSVVRDREYDVTLGTPESRITYFSANPNGEAEIIKVTLKPNPRVRRII---FE 638

Query: 706 VRFPISAIRVFAGRNSVGVRGISL 729
             F   +I    GR + GV    L
Sbjct: 639 HDFSEVSI---KGRQARGVILTRL 659


>gi|308198963|dbj|BAJ22616.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 176

 Score =  336 bits (862), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 104/172 (60%), Positives = 128/172 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 4   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 63

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS 
Sbjct: 64  QDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSE 123

Query: 162 QEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            EP VL +R PN+L+NG  GIAVGMATNIP H+L E++DG + ++DN D  L
Sbjct: 124 SEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASL 175


>gi|190888754|gb|ACE96002.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 159

 Score =  336 bits (862), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 91/159 (57%), Positives = 119/159 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  GI
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGI 159


>gi|226452045|gb|ACO59202.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452047|gb|ACO59203.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452049|gb|ACO59204.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452051|gb|ACO59205.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452053|gb|ACO59206.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452055|gb|ACO59207.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452061|gb|ACO59210.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452063|gb|ACO59211.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452075|gb|ACO59217.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452077|gb|ACO59218.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452079|gb|ACO59219.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452085|gb|ACO59222.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452087|gb|ACO59223.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452089|gb|ACO59224.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 130/173 (75%), Gaps = 3/173 (1%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE +L K A  LL
Sbjct: 65  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFADVLL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 124 GELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|37999020|dbj|BAD00080.1| DNA topoisomerase IV subunit C [Streptococcus canis]
          Length = 176

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|37999026|dbj|BAD00083.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp. equi]
 gi|197941219|gb|ACH78329.1| DNA topoisomerase [Streptococcus equi subsp. zooepidemicus]
          Length = 176

 Score =  336 bits (861), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 122/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|160885388|ref|ZP_02066391.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
 gi|156109010|gb|EDO10755.1| hypothetical protein BACOVA_03388 [Bacteroides ovatus ATCC 8483]
          Length = 881

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 160/748 (21%), Positives = 292/748 (39%), Gaps = 108/748 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   EE          DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +L+       +++ +  +   N+  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACAHIDERLTP-----------------YYPKFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  E+ E   I +  + ++         +K++   + PRRT +      
Sbjct: 434 NSDKADELIAKMKEEVAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTALKKD---EFVACCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK  +  +++ +     TI      +      
Sbjct: 528 DDVIIFFRDGKYIV-----TPVADKKFVGKN-VLYVNVFKKNDKRTIYNVAYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT-----K 701
           Y         V+R  ++  ++           +SR    S      E +I+  T     +
Sbjct: 582 Y---------VKRFAVTSVVRDREYDVTQGTPESRITYFSANP-NGEAEIIKVTLKPNPR 631

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + + +     +     GR + GV    L
Sbjct: 632 VRRIIFEHDFSEVSIKGRQARGVILTRL 659


>gi|190888734|gb|ACE95992.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 119/158 (75%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|325104895|ref|YP_004274549.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
 gi|324973743|gb|ADY52727.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter saltans DSM 12145]
          Length = 898

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 168/811 (20%), Positives = 302/811 (37%), Gaps = 110/811 (13%)

Query: 10  EEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
           EE E  I    + I+   +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    
Sbjct: 2   EENEDEILHNVIPISGLYENWFLDYASYVILDRAVPHINDGLKPVQRRILHSLKEMD--- 58

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPA 126
           + ++ K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  A
Sbjct: 59  DGRFNKVANVIGNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWGDPITGDSAA 113

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  ++     DT D++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 114 AARYIEGRLSKFALEVV--FNPDTTDWQLSYDGRNREPVTLPVKFPLLLAQGAEGIAVGL 171

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           AT +  HN  E++D  + V+     ++         PDFPTG +        + Y  G+ 
Sbjct: 172 ATKVMPHNFIELIDASIEVLRGNRPNIL--------PDFPTGGLAD-----FSQYNEGQR 218

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              IR  + I +   D++ +V++EIPY      +++ I  +    +        +++  +
Sbjct: 219 GGKIRVRAKISE--LDKKTLVISEIPYSTTTTGLIDSI--IAANDKGKIKIKKIEDNTAK 274

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +VI L  G S D+ ++ LY +T+ ++  S N   +   KP   ++  IL     + +
Sbjct: 275 NVEIVIHLAPGISPDLTIDALYAFTACETSISPNTCVIKKDKPHFMSVNDILIESTNYTK 334

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ R  +  L+  +++      L I           I+                     
Sbjct: 335 ALLKRELEIKLHDLQEKIFFSSLLKIF----------IQEGMYKNPEYENSSNFEEVVKV 384

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           +  L D    S Y               + +++  ++ +T         ++ +L  +I  
Sbjct: 385 LHRLFDPFKSSLYREIEAEDF-------KKLIDKPMSSITRFDVKKADEQMAALEKDIT- 436

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
              +  +   L        L +KD+    R  +      D                    
Sbjct: 437 --LVKKNLRHLTDFAIDYFLRLKDKFGKGRERKTEIRAFDRV------------------ 476

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
               V L+  +       G  G  ++ +     LF  S    ++ F   G     KV   
Sbjct: 477 EAAHVALANVKFYVNREDGFVGTGLKKD---EYLFDCSDIDDIIVFREDGSFIVTKVQD- 532

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +      I  + + +     T       +      Y         ++R  +    
Sbjct: 533 -----KTFVGKGILHVGIFKKNDDRTTYNMIYRDGKSGTAY---------IKRFAVGGVT 578

Query: 667 QINRSGKIAMKLDSRDEILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNSVGV 724
           +              D+   +   T+ + +L  T    G+     I+ ++  +       
Sbjct: 579 R--------------DKEYDLTKGTKGSKVLYFTANPNGEAEVVNIA-LKPMS------- 616

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +   L+       +AI              +K ++ + + +S          +       
Sbjct: 617 KLRKLSFDIDFAEIAIKGRGSQGNIATKFAIKKITLKSKGVSTLAGRKIWYDDIVKRLNE 676

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
               +       E  IL V E G  + +S  
Sbjct: 677 NGHGKFLGEFQAEDKILCVFEDGSYELSSFD 707


>gi|260591221|ref|ZP_05856679.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
 gi|260537086|gb|EEX19703.1| DNA topoisomerase 4 subunit A [Prevotella veroralis F0319]
          Length = 910

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 140/583 (24%), Positives = 249/583 (42%), Gaps = 73/583 (12%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 101 HPHGDASIGDALVQLGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HNL ++ +  V 
Sbjct: 156 -FNPKTTEWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKILPHNLNDICEAAVQ 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            + N D  L         PDFPTG  I         Y  G+   V++  + IE    D +
Sbjct: 215 YLRNEDFHLY--------PDFPTGGSID-----AAKYNDGQRGGVLKVRAKIE--KLDNK 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ E+P+     ++ E I + V + +I  +  + D +  +   + + L  G S+D  +
Sbjct: 260 TLVIREVPFTKTANSLQESITKAVEKGKIK-VRKVEDMTASE-VEIQLHLTPGTSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP+  T+  +L+  V   + ++    +   ++  ++ 
Sbjct: 318 DALYAFTDCEINISPNCCVIEDNKPKFLTISDVLRNSVEHTKALLKMELEIRKHELEEQL 377

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I +   + +             +    + + N  ++   +D   D        
Sbjct: 378 FYNSLERIFIE--ERIY------------KERKFETARNLDEVVAFVDAKLDPYKKTFI- 422

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+++ R+    +D     +  +  EI E   I    S ++ +  + 
Sbjct: 423 --REVTREDILRLLEIKMQRILKFNKDKADELIQKIKAEIAE---IDKDLSEMVRVTIEW 477

Query: 505 LLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
              +K++   D PR T I      +  +     E + +  S  G++              
Sbjct: 478 FTHLKEKYGKDHPRHTEIKSFDTIVAAKVVDANEKLYID-SKAGFIGTGL---------- 526

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                            +   S    V+ F   G     ++  
Sbjct: 527 ------------KKAEFVQNCSDLDDVIIFYRDGKYKVIRIAE 557


>gi|315224728|ref|ZP_07866551.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
 gi|314945356|gb|EFS97382.1| DNA topoisomerase 4 subunit A [Capnocytophaga ochracea F0287]
          Length = 864

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 161/811 (19%), Positives = 310/811 (38%), Gaps = 108/811 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M ++   +   +   I  V  T   Q+ +L YA  VIL RA+P + DG KPV RRI+  +
Sbjct: 1   MEDNTPQNTTPQGDSIIKV--TGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSL 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 59  KELD---DGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNI 110

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  ++        +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 LTGDDAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGT 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  +A +     +L         PDFPT  ++       +
Sbjct: 169 EGIAVGLSTKILPHNFIELIEASIAYLKKKPFELY--------PDFPTAGIMD-----VS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  +  D+  + +TEIP+     ++++ I +   + +I      
Sbjct: 216 GYNDGARGGRVRVRAKI--SQLDKSTLCITEIPFTTTTTSLIDSILKANEKGKIKIKK-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D++      +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 272 VDDNTAANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RT  LL +  +     + +    A+L+++             R E+  
Sbjct: 332 RSTD--------RTVSLLKQELEIELSELEMQWHSASLEKI-----------FIREEMYI 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
              N +D + L + +         D    +++     + ++ + R+T          +  
Sbjct: 373 DFKNYTDRESLYEYLYQRFEPFKKDLIREITDDDLAKLTQIPMIRITRFDSYKADENILK 432

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I+E  + L++   L+         +K      R  +    +      D I    +V
Sbjct: 433 IEADIEEVKNHLAN---LIDYAISHFERLKKTYGKGRERKTEMRVF-----DTIEATKVV 484

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           V  +         L V RA+   G G        +         S    V+ F+  G +Y
Sbjct: 485 VRNTK--------LYVNRAEGFVGTGLRKDEYVGD--------CSDIDDVIVFTESGAMY 528

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV                NI+ +   ++        +  + +N +Y    T    ++R
Sbjct: 529 VTKVSDKQYIEK--------NIIHVAVFKKD-------DKRTVYNMIYKDGQTGFSYIKR 573

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++   +              D+   +    +E+ +L  T          + +     R
Sbjct: 574 FNVTGITR--------------DKKYELIPQHKESRVLYFTANPNG----EAEVVTVNLR 615

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               +R   L          I              +K +  + + +S          +  
Sbjct: 616 QLGTLR--KLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVSTLKPRKIWFDDIV 673

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                            +  +L ++++G  K
Sbjct: 674 KRLNTEERGTLLGAFKGDDRMLLITKEGVVK 704


>gi|329124301|gb|AEB72028.1| DNA gyrase subunit A [Aeromonas sp. A19(2011)]
          Length = 153

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 94/152 (61%), Positives = 121/152 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD
Sbjct: 2   VIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYD 61

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 62  TIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVP 121

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           NYDG+   P V+  + PN+LVNG  GIAVG A
Sbjct: 122 NYDGTEMIPAVMPTKVPNLLVNGSSGIAVGWA 153


>gi|237715450|ref|ZP_04545931.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262405292|ref|ZP_06081842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643163|ref|ZP_06720993.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294810552|ref|ZP_06769204.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
 gi|229444759|gb|EEO50550.1| topoisomerase IV subunit A [Bacteroides sp. D1]
 gi|262356167|gb|EEZ05257.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641508|gb|EFF59696.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CC
           2a]
 gi|294442213|gb|EFG11028.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 881

 Score =  335 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 160/748 (21%), Positives = 292/748 (39%), Gaps = 108/748 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   EE          DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEEHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +L+       +++ +  +   N+  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLRKSADNTLDLLKQELEIKKNEILEALHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACAHIDERLTP-----------------YYPKFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  E+ E   I +  + ++         +K++   + PRRT +      
Sbjct: 434 NSDKADELIARMKEEVAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTALKKD---EFVACCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK  +  +++ +     TI      +      
Sbjct: 528 DDVIIFFRDGKYIV-----TPVADKKFVGKN-VLYVNVFKKNDKRTIYNVAYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT-----K 701
           Y         V+R  ++  ++           +SR    S      E +I+  T     +
Sbjct: 582 Y---------VKRFAVTSVVRDREYDVTQGTPESRITYFSANP-NGEAEIIKVTLKPNPR 631

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISL 729
           + + +     +     GR + GV    L
Sbjct: 632 VRRIIFEHDFSEVSIKGRQARGVILTRL 659


>gi|313204243|ref|YP_004042900.1| DNA topoisomerase iv subunit a [Paludibacter propionicigenes WB4]
 gi|312443559|gb|ADQ79915.1| DNA topoisomerase IV subunit A [Paludibacter propionicigenes WB4]
          Length = 951

 Score =  335 bits (860), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 176/787 (22%), Positives = 297/787 (37%), Gaps = 112/787 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+PD+ DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 54  QNWFLDYASYVILERAVPDIYDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 109

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 110 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALETV- 164

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+ + I  HN  E++D CVA
Sbjct: 165 -FNPKTTEWKSSYDGRNKEPIALPVKFPLLLAQGVEGIAVGLNSKILPHNFNELLDACVA 223

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D         I  PDF TG  I       + Y  G   G++ IR          D
Sbjct: 224 NLKGED--------FILYPDFQTGGSID-----VSRYNDGERGGAVKIRAKI----GKID 266

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIP+  N + ++E I +   + +I       D++      +++ L  G+S+D 
Sbjct: 267 NKTLAITEIPFGTNTSKLIESIIKASDKGKIKIRK--VDDNTSANVEILVHLLPGSSSDK 324

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP    +  +L+       +++    +        
Sbjct: 325 TIDALYAFTDCELSISPNCCVIHDNKPRFCGVSEMLRISCQHTMDLLQAELEI------Q 378

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           RA +   L         +   I         + +  + S +  ++   I  ID       
Sbjct: 379 RAELQEQLFFTSLEKIFIENRIY--------KDKGFEDSTSQDEV---IVHIDKRLEPFK 427

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D    +       +LE+++ R+T    D     L S+   I E   I    + L+    
Sbjct: 428 KDFIREIVREDFIKLLEIKMMRITKFDSDKANETLISIQKRIDE---INHHLAHLVDYTI 484

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                +K +   D PR T I      +  +     E +       G++            
Sbjct: 485 SWYEGLKAKYGKDHPRLTEIRNFETIVASKVVEANEKL-YVNYDEGFIGTSLRKD----- 538

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                              +   S    ++ F   G     KV          +     N
Sbjct: 539 -----------------EFVCNCSDIDDIIIFFKDGKYKIVKVAD--------KIFIGKN 573

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           IL L+  ++        +  + +N +Y    T    ++R  ++   +             
Sbjct: 574 ILHLDVFKK-------NDKRTIYNAVYRDGKTGPYYIKRFAVNGITR------------- 613

Query: 681 RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI 740
            D+   +   T  + ++  T            IRV     +   R   L        +AI
Sbjct: 614 -DKDYDITQGTAGSKVVYFTSNPNA---EAEVIRVTLKPRA---RLFKLVFEKDFSDIAI 666

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
                         ++ ++ +++  S           D       +        L E  I
Sbjct: 667 KGRQSMGNILTKNDIQKITLKQKGGSTLGGRQVWFDRDVLRLNYDNRGEYLGEFLSEDSI 726

Query: 801 LTVSEKG 807
           L VS KG
Sbjct: 727 LVVSSKG 733


>gi|153808895|ref|ZP_01961563.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
 gi|149128228|gb|EDM19447.1| hypothetical protein BACCAC_03196 [Bacteroides caccae ATCC 43185]
          Length = 881

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 158/750 (21%), Positives = 289/750 (38%), Gaps = 112/750 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   EE          DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEIPEEHSDYKPADARDENVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  +  +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASINYLRGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    +++++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KLDNKTLAITEIPYGKTTSSVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK       +++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLKKSADNTLDLLKQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACEHIDERLTP-----------------FYPSFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  +I E   I    + ++         +K++   + PRRT +      
Sbjct: 434 NSDKADELIARMKEDIAE---IDDHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTALKKD---EFVANCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK ++  +++ +     TI      +      
Sbjct: 528 DDVIVFFRDGKYIV-----TPVADKKFVGKNIL-YVNVFKKNDKRTIYNVTYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTTKLGQ 704
           Y         ++R  ++  ++        +   + D  +         E +I+  T    
Sbjct: 582 Y---------IKRFAVTSVVRDREYD---VTQGTPDSRITYFSANPNGEAEIIKVTLKPN 629

Query: 705 C----VRFPIS-AIRVFAGRNSVGVRGISL 729
                + F    +     GR + GV    L
Sbjct: 630 PRVRRIIFERDFSEISIKGRQAQGVILTRL 659


>gi|149346164|gb|ABR23653.1| gyrase A [Aeromonas hydrophila]
          Length = 152

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 93/152 (61%), Positives = 122/152 (80%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ 
Sbjct: 1   YAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDI 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TV
Sbjct: 61  AVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           D+ PNYDG+   P V+  + PN+LVNG  GIA
Sbjct: 121 DWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 152


>gi|37999016|dbj|BAD00078.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 176

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|253571133|ref|ZP_04848540.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
 gi|251839086|gb|EES67170.1| topoisomerase IV subunit A [Bacteroides sp. 1_1_6]
          Length = 881

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/747 (21%), Positives = 283/747 (37%), Gaps = 106/747 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   E           DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEGHSDYKPADARDENVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +      L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGESFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KLDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK        ++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLKKSADNTLGLLKQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A                    IDD            +++     ++E+++ R+   
Sbjct: 391 DMDAACA-----------------HIDDRLTPFYPSFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  EI E   I    + ++         +K++   + PRRT +      
Sbjct: 434 NTDKADELIARMKEEIAE---IDDHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINRDEGFIGTALKKD---EFVANCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK ++  +++ +     TI      +      
Sbjct: 528 DDVIVFFRDGKYIV-----TPVADKKFVGKNIL-YVNVFKKNDKRTIYNITYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKL 702
           Y+      G VR     ++     +    +       + +  +   T      +      
Sbjct: 582 YIKRFAVTGVVR---DREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRVRRIIFE 638

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISL 729
                F   +I    GR + GV    L
Sbjct: 639 RD---FSEISI---KGRQAQGVILTRL 659


>gi|213963463|ref|ZP_03391717.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
 gi|213953871|gb|EEB65199.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Capnocytophaga sputigena Capno]
          Length = 864

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 163/811 (20%), Positives = 310/811 (38%), Gaps = 108/811 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+   +   +   I    IT   Q+ +L YA  VIL RA+P + DG KPV RRI+  +
Sbjct: 1   MEENTSQNTASQGDSIIK--ITGMYQDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSL 58

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++
Sbjct: 59  KELD---DGRYNKVANVVGNTM-QYHPHGDASIGDAIVQIGQ----KDLLIDTQGNWGNI 110

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  ++        +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 111 LTGDDAAAPRYIEARLSKFALDVV--FSPKVTEWQSSYDGRKKEPISLPVKFPLLLAQGT 168

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  +A +     +L         PDFPT  ++       +
Sbjct: 169 EGIAVGLSTKILPHNFIELIEASIAYLKGKSFELY--------PDFPTAGIMD-----VS 215

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + I  +  D+  + +TEIP+     ++++ I +   + +I      
Sbjct: 216 GYNDGARGGRVRVRAKI--SQLDKSTLCITEIPFTTTTTSLIDSILKANEKGKIKIKK-- 271

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            D++      +++ L  G S D  ++ LY +T+ ++  S     +   KP   T+  +L+
Sbjct: 272 VDDNTAANVEILVHLPNGTSPDKTIDALYAFTACETAISPITCVIEDNKPHFLTVSEVLR 331

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                       RT  LL +  +     + +    A+L+++             R E+  
Sbjct: 332 RSTD--------RTVNLLKQELEIELSELEMQWHNASLEKI-----------FIREEMYI 372

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
              N +D + L + +         D    +++     + ++ + R+T          +  
Sbjct: 373 DFKNYTDRESLYEYLYKRFEPFKKDLLREITDDDLAKLTQIPMIRITRFDSYKADENILK 432

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           +  +I+E  + L++   L+         +K    +  R R  E  +    E   V     
Sbjct: 433 IEADIEEVKNHLAN---LIDYAIAHFERLKKTY-SKGRERKTEIRVFDTIEATKV----- 483

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
                   V+   L V RA+   G G        +         S    V+ F+  G +Y
Sbjct: 484 -------VVRNTKLYVNRAEGFVGTGLRKDEYVGD--------CSDIDDVIVFTESGAMY 528

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV                NI+ +   ++        +  + +N +Y    T    ++R
Sbjct: 529 VTKVADKQYIEK--------NIIHVAVFKKD-------DKRTVYNMIYKDGQTGFSYIKR 573

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++   +              D+   +    +E+ +L  T          + +     R
Sbjct: 574 FNVTGITR--------------DKKYELIPQHKESRVLYFTANPNG----EAEVVTVNLR 615

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
               +R   L          I              +K +  + + +S          +  
Sbjct: 616 QLGTLR--KLRWDIDFADTLIKGRGVKGNLVSKYAIKRIELKEKGVSTLKPRKIWFDDIV 673

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                            +  +L ++++G  K
Sbjct: 674 KRLNTEERGTLLGAFKGDDRMLLITKEGVVK 704


>gi|282878744|ref|ZP_06287512.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
 gi|281299135|gb|EFA91536.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella buccalis ATCC
           35310]
          Length = 911

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 152/714 (21%), Positives = 269/714 (37%), Gaps = 98/714 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 45  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LL++ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 101 HPHGDASIGDALVQMGQ----KDLLVDTQGNWGNILTGDRAAAPRYIEARLSKFALDVV- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  ++ +YDG  +EP+ L A++P +L  G  GIAVG+++ I  HNL E+ +  + 
Sbjct: 156 -FNPKTTHWQLSYDGRNKEPITLPAKFPLLLAQGAEGIAVGLSSKILPHNLNEICEAAIH 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +      L         PDFPTG  I         Y  G+  G++ +R          D
Sbjct: 215 YLRGEKFQLY--------PDFPTGGSID-----VEKYNDGQRGGTLKVRAKIE----KLD 257

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ EIP+      +++ I   + + +I       D++      + + L  G S+D 
Sbjct: 258 NKTLVIKEIPFSKTTTTLIDSILRAIDKGKIKAKK--VDDNTAAEVEIQVHLAPGVSSDK 315

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY ++  +   S N   +   KP   T+  +L+  V     ++ +  +   N    
Sbjct: 316 TIDALYAFSDCEINVSPNCCVIEDDKPGFLTISDVLRHNVDSTMGLLRKELEIRKN---- 371

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
              +L  L  A      +   I      E A+           D+  ++  +D+      
Sbjct: 372 --ELLEQLFFASLEKIFIEERIYKDKKFEEAK-----------DLDSVVAHVDNRLEPFK 418

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +    ++      +LE+++ R+    +D   + +     +I     I    + +  +  
Sbjct: 419 PNFIREVTRDDILRLLEIKMNRILKFNKDKANDFIARTKADI---KSIDHDLAHMTDVTI 475

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                ++D+   D PR T I         +     E                L + R + 
Sbjct: 476 HWFEFIRDKYGKDHPRLTEIRSFETIEATKVVEANEK---------------LYIDRQEG 520

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
             G G              +   S    ++ F   G     +V          +     N
Sbjct: 521 FVGTGLKK--------NEFVCNCSDIDDIIIFYKDGKFKIIRVAD--------KIFVGKN 564

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS 680
           ++ +   ++      +                    ++R  ++   +         K  S
Sbjct: 565 VIHVQVFKKNDKRTIYNVVYQDGKKGTYF-------IKRFNVTSITRDRDYDLTQGKPGS 617

Query: 681 RDEILSVETCTQENDILLTT----KLGQCVRFPISAIRV--FAGRNSVGVRGIS 728
           R    +     +   I +T     K  +   F           GR + G     
Sbjct: 618 RVMYFTANPNGEAETIKVTLDPDPKKKKQNIFLEKDFSEVLIKGRGAKGNILTK 671


>gi|303236883|ref|ZP_07323462.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
 gi|302483051|gb|EFL46067.1| DNA gyrase/topoisomerase IV, A subunit [Prevotella disiens
           FB035-09AN]
          Length = 990

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 147/585 (25%), Positives = 253/585 (43%), Gaps = 61/585 (10%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A I+G  M ++
Sbjct: 110 KNWFLDYASYVILERAVPHIDDGLKPVQRRILHSMKRMD---DGRYNKVANIAGHTM-QF 165

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 166 HPHGDASICDALVQMGQ----KDLLIDTQGNWGNIFTGDRAAAPRYIESRLSKFALETV- 220

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EPV L A++P +L  G  GIAVG+++ I  HN+ E+ D  + 
Sbjct: 221 -FNPKTTEWQLSYDGRNKEPVTLPAKFPLLLAQGAEGIAVGLSSKILPHNMVEICDAAIN 279

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +      L         PDFPTG  I         Y  G+  G++ +R          D
Sbjct: 280 YLKEKPFALY--------PDFPTGGSID-----VEKYNDGQRGGTLKVRAKVE----KID 322

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ E+P+    +++ E I + V + ++  I  + D +  +   + + L  G S+D 
Sbjct: 323 NKTLVIREVPFTKTASSLAESITKAVEKGKLK-IRKVEDMTASE-VEIQLHLTPGTSSDK 380

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP+  T+  +L+  V   + ++ R  +        
Sbjct: 381 TMDALYAFTDCEVSISPNCCVISDNKPQFLTISDVLRHSVNHTQGLLRRELEIR------ 434

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           +A +   L  +      +   I      ETA+            + D I  +D       
Sbjct: 435 KAELEEQLFFSSLERIFIEERIYKERGFETAKT-----------MDDAIKFVDGKLEPFK 483

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +    +       ++E+++ R+    +D     L ++  EI E   I    S ++ +  
Sbjct: 484 KNFIREVKREDILRLMEIKMQRILKFNKDKADELLKNIQAEIAE---INKDLSEMVRVTI 540

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +    +K +   D PR+T I      +  +     E +   +   G      L      +
Sbjct: 541 EWFKHLKTKYGKDYPRKTEIKSFDTIVAAKVVDANEKLY--IDRKGGFIGTDLKKAEFVQ 598

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                   +V   +     + I         F   G ++ +   R
Sbjct: 599 NCSNLDDVIVFYRDGKYKVVHIADK-----VFVDKGVIHVQVFKR 638


>gi|298386698|ref|ZP_06996253.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
 gi|298260372|gb|EFI03241.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 1_1_14]
          Length = 881

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 160/747 (21%), Positives = 282/747 (37%), Gaps = 106/747 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   E           DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEGHSDYKPADARDENVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDIV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +      L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGESFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KLDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK        ++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLKKSADNTLGLLKQELEIKKGEILESLHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A                    IDD            +++     ++E+++ R+   
Sbjct: 391 DMDAACA-----------------HIDDRLTPFYPSFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  EI E   I    + ++         +K +   + PRRT +      
Sbjct: 434 NTDKADELIARMKEEIAE---IDDHLAHIVDYTVNWYQMLKSKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINRDEGFIGTALKKD---EFVANCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK ++  +++ +     TI      +      
Sbjct: 528 DDVIVFFRDGKYIV-----TPVADKKFVGKNIL-YVNVFKKNDKRTIYNITYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKL 702
           Y+      G VR     ++     +    +       + +  +   T      +      
Sbjct: 582 YIKRFAVTGVVR---DREYDVTQGTPDSRITYFSANPNGEAEIIKVTLKPNPRVRRIIFE 638

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISL 729
                F   +I    GR + GV    L
Sbjct: 639 RD---FSEISI---KGRQAQGVILTRL 659


>gi|37999028|dbj|BAD00084.1| DNA topoisomerase IV subunit C [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  335 bits (858), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 121/174 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 YLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|91201872|emb|CAJ74932.1| similar to DNA gyrase subunit A [Candidatus Kuenenia
           stuttgartiensis]
          Length = 858

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 166/750 (22%), Positives = 286/750 (38%), Gaps = 78/750 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSIT-DEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M  + +     E  G+   ++   EM  N +L YA  VIL RA+P L DGLKPV RRIL 
Sbjct: 1   MVNNKMFKSSPEANGVIHEALHVSEMYSNWFLEYASYVILERAVPALLDGLKPVQRRILH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M QM    + ++ K A I G  M +YHPHG+AAI +AL  + Q    + LLIE QGN+G
Sbjct: 61  SMKQMD---DGRFNKAANIIGHTM-QYHPHGDAAIGEALVNLGQ----KDLLIETQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
            +  GD  AA RY E RL K A  +       T +++ +YDG  +EPV+L  ++P +L  
Sbjct: 113 DISTGDSAAAPRYIEARLSKFALEV--AFNNQTTEWQLSYDGRKKEPVLLPMKFPLLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVG+AT I  HN  E+++  +  +   +++L         PDFPTG +       
Sbjct: 171 GAEGIAVGLATRIMPHNFIELLEASIDTLRGKEVNLL--------PDFPTGGMAD----- 217

Query: 238 KNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            + Y  G   G I +R    I +       +V+  IPY    A +++ I +     +I  
Sbjct: 218 FSNYNEGLRGGRINVRAKIEILEKK----TLVIRSIPYTTTTANVMDSIVKANENGKIKI 273

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
                 ++  +   +V+EL    S DV ++ LY +T  +   S N   +   KP    + 
Sbjct: 274 KR--VVDNTAKDVEIVVELPPNVSPDVTIDALYAFTDCEISISPNACVIIDEKPRFLGVN 331

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            ILK        ++ R  +  L + R+  H      I +     + R I      E    
Sbjct: 332 EILKISAKHTVGLLKRELEIKLGELREAWHFSSLEKIFIE--KRIYRDIEECETWE---- 385

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
                         +I  ID             ++E    ++ E+++ R++         
Sbjct: 386 -------------GVIAAIDKGLMPYKKHFQREINEEDIVSLTEIKIKRISRFDSFKANE 432

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            + +L +EIK+          L         ++  +    R  +      +      + +
Sbjct: 433 AIKALEVEIKQVEY---DLKHLTEYAIAWFENLIKKYGKGRERKTQIRNFETIHVAQVAQ 489

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE--------DFVTDLFIVSTHT 587
            +  + ++ +       L               +V   +             +     H 
Sbjct: 490 ANQKLYINRMDGFIGYGLRKEEYIGDCSDIDDIIVFLSDCTFMVTRVSEKAFVGKDIIHA 549

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQAR-----GKALINILSLNQGERITTIMPFPEDES- 641
            V   +    +Y         G    +             +L+QG++ + ++ F  + + 
Sbjct: 550 QVWKKNDARMIYHMIYQDGKDGPVYVKRFAVTSITYDKSYNLSQGKKGSKVLYFSANPNS 609

Query: 642 SWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK 701
               + V  +TK    +     DF  +   G+ ++        +      +      +T 
Sbjct: 610 ESEEVTVALSTKSAARKLTFDYDFAGLAVKGRASIGNRLTKYPVRKILHKKA---GTSTL 666

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            G  + +  +      GR +   RG  L K
Sbjct: 667 GGIDIWYDET-----VGRLNSENRGKYLGK 691


>gi|255692614|ref|ZP_05416289.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
 gi|260621674|gb|EEX44545.1| DNA topoisomerase 4 subunit A [Bacteroides finegoldii DSM 17565]
          Length = 881

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 135/554 (24%), Positives = 237/554 (42%), Gaps = 64/554 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   E           DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEIPEGHSDYKPADARDESVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R          D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIT----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDRTIDALYAFTDCEVSISPNCCVIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK       +++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTISKVLKKSADNTLDLLKQELEIKKGEILEALHFASLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACEHIDKRLTP-----------------YYPQFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  EI E   I +  + ++         +K++   + PRRT +      
Sbjct: 434 NSDKADELIAKMKEEIAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRRTELRNFDTI 490

Query: 527 MEDEDCIVREDMVV 540
              +     E + +
Sbjct: 491 EAAKVVEANEKLYI 504


>gi|37999018|dbj|BAD00079.1| DNA topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 176

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 92/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 175


>gi|270295502|ref|ZP_06201703.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274749|gb|EFA20610.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 893

 Score =  335 bits (858), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 137/550 (24%), Positives = 234/550 (42%), Gaps = 59/550 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           +  + +  EE          D           QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 13  DKELPAGSEEHSDYKPADAKDANIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQ 72

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ 
Sbjct: 73  RRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDC 124

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  ++P
Sbjct: 125 QGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFP 182

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ I  HN  E+ D  ++ + N +  L         PDF TG  I 
Sbjct: 183 LLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHNEEFKLY--------PDFQTGGSID 234

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
                 + Y  G     IR  S IE    D + + + EIPY    A++ + I +   + +
Sbjct: 235 -----VSKYNDGERGGAIRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGK 287

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I         S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP   
Sbjct: 288 IKIRKVEDLTSGS--VEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFL 345

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T+  +L+  V     ++ +  +    +  +  H      I +       +    + N + 
Sbjct: 346 TVSDVLRKSVDNTLALLRQELEIRKGEILESLHFASLEKIFIEERIYKDKEFEQAKNMDA 405

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   + +R                            +++     ++E+++AR+     D 
Sbjct: 406 ACEHIDERLTP-----------------YYPTFIREVTKEDILRLMEIKMARILKFNSDK 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDE 530
               +  +  +I+E    L++   ++         +KD+     PRRT +         +
Sbjct: 449 AEELIARMRKDIEEIDCHLAN---IVEYTVDWFRMLKDKYGKAFPRRTELRNFDTIEATK 505

Query: 531 DCIVREDMVV 540
                E + +
Sbjct: 506 VIEANEKLYI 515


>gi|29348988|ref|NP_812491.1| DNA topoisomerase IV subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340895|gb|AAO78685.1| topoisomerase IV subunit A [Bacteroides thetaiotaomicron VPI-5482]
          Length = 850

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 155/713 (21%), Positives = 274/713 (38%), Gaps = 96/713 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 3   QNWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 58

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 59  HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDIV- 113

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+ D  ++
Sbjct: 114 -FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIS 172

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +      L         PDF TG  I         Y  G   G++ +R   +      D
Sbjct: 173 YLHGESFQLY--------PDFQTGGSID-----VAKYNDGERGGAVKVRAKIN----KLD 215

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY    + +++ I + V + +I       D++      +++ L  G S+D 
Sbjct: 216 NKTLAITEIPYGKTTSTVIDSILKAVDKGKIKIRK--VDDNTAANVEILVHLAPGTSSDK 273

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP   T+  +LK        ++ +  +    +  +
Sbjct: 274 TIDALYAFTDCEVSISPNCCVIDDSKPHFLTVSKVLKKSADNTLGLLKQELEIKKGEILE 333

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +       +    S + + A                    IDD      
Sbjct: 334 SLHFASLEKIFIEERIYKDKEFEQSKDMDAACA-----------------HIDDRLTPFY 376

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 +++     ++E+++ R+     D     +  +  EI E   I    + ++    
Sbjct: 377 PSFIREVTKEDILKLMEIKMGRILKFNTDKADELIARMKEEIAE---IDDHLAHIVDYTV 433

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                +K +   + PRRT +         +     E                    +   
Sbjct: 434 NWYQMLKSKYGKNFPRRTELRNFDTIEAAKVVEANE--------------------KLYI 473

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
              +G  G  ++ +     +   S    V+ F   G          P+   +  GK ++ 
Sbjct: 474 NRDEGFIGTALKKD---EFVANCSDIDDVIVFFRDGKYIV-----TPVADKKFVGKNIL- 524

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-- 678
            +++ +     TI      +      Y+      G VR     ++     +    +    
Sbjct: 525 YVNVFKKNDKRTIYNITYRDGKEGTTYIKRFAVTGVVR---DREYDVTQGTPDSRITYFS 581

Query: 679 --DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
              + +  +   T      +           F   +I    GR + GV    L
Sbjct: 582 ANPNGEAEIIKVTLKPNPRVRRIIFERD---FSEISI---KGRQAQGVILTRL 628


>gi|297578850|ref|ZP_06940778.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
 gi|297536444|gb|EFH75277.1| DNA gyrase, subunit A [Vibrio cholerae RC385]
          Length = 460

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 155/482 (32%), Positives = 243/482 (50%), Gaps = 84/482 (17%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  +L+E Q +AIL+LRL +LTGL  + I +E   L  EI   + IL+S  RL+ +I+
Sbjct: 9   RDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEIAALMHILASTERLMEVIR 68

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL +++      RRT I     D++ E+ I RED+VVT+SH GYVK   LS Y AQRRG
Sbjct: 69  EELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRG 128

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL 622
           GKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV++LP+ S  ARGK ++N+L
Sbjct: 129 GKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLL 188

Query: 623 SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRD 682
            L + ERIT I+P  E      + ++  AT  G V++  L  F  +  +G IA+ L   D
Sbjct: 189 PLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLDQFANVRANGLIALNLRDED 245

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISA-------------------------IRVFA 717
            ++ V+    E++I+L +K G+ VRF  S                          +R   
Sbjct: 246 SLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPM- 304

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR + GVRG+ L                                                
Sbjct: 305 GRTAAGVRGMKL------------------------------------------------ 316

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                 +  +     +   E  +LTV+E G+GKRTS  ++    R  +G+ +  VS+ N 
Sbjct: 317 -----ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERN- 370

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G++V    V + D+ +++++ GTL+R  V E+    R T+GV +  T++ E VV ++RI
Sbjct: 371 -GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQGVTLIRTSEGESVVGLQRI 429

Query: 898 RE 899
            E
Sbjct: 430 DE 431



 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 35  EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 92

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 93  IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 140

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 141 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 200

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 201 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 258

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 259 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 318

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 319 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 378

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 379 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 437

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 438 PEGEEALVENDAPVAQDDDGEQE 460


>gi|160891364|ref|ZP_02072367.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
 gi|156858771|gb|EDO52202.1| hypothetical protein BACUNI_03813 [Bacteroides uniformis ATCC 8492]
          Length = 893

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 137/550 (24%), Positives = 234/550 (42%), Gaps = 59/550 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           +  + +  EE          D           QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 13  DKELPAGSEEHSDYKPADAKDANIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQ 72

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ 
Sbjct: 73  RRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDC 124

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  ++P
Sbjct: 125 QGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFP 182

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ I  HN  E+ D  ++ + N +  L         PDF TG  I 
Sbjct: 183 LLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHNEEFKLY--------PDFQTGGSID 234

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
                 + Y  G     IR  S IE    D + + + EIPY    A++ + I +   + +
Sbjct: 235 -----VSKYNDGERGGAIRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGK 287

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I         S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP   
Sbjct: 288 IKIRKVEDLTSGS--VEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFL 345

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T+  +L+  V     ++ +  +    +  +  H      I +       +    + N + 
Sbjct: 346 TVSDVLRKSVDNTLALLRQELEIRKGEILESLHFASLEKIFIEERIYKDKEFEQAKNMDA 405

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   + +R                            +++     ++E+++AR+     D 
Sbjct: 406 ACEHIDERLTP-----------------YYPTFIREVTKEDILRLMEIKMARILKFNSDK 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDE 530
               +  +  +I+E    L++   ++         +KD+     PRRT +         +
Sbjct: 449 AEELIARMRKDIEEIDCHLAN---IVEYTVDWFRMLKDKYGKAFPRRTELRNFDTIEATK 505

Query: 531 DCIVREDMVV 540
                E + +
Sbjct: 506 VIEANEKLYI 515


>gi|291513745|emb|CBK62955.1| DNA topoisomerase IV subunit A [Alistipes shahii WAL 8301]
          Length = 954

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 143/585 (24%), Positives = 239/585 (40%), Gaps = 77/585 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M    V  + +Y K A + G+ M +Y
Sbjct: 61  KNWFLDYASYVILERAVPHVEDGLKPVQRRILHAM---KVVDDGRYNKVANLVGQTM-QY 116

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 117 HPHGDASIKDALVQLGQ----KDLLIDCQGNWGNILTGDEAAAGRYIEARLSKFALDVV- 171

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
              K T ++  +YDG  +EPV L  ++P +L  G  GIAVG+A+ I  HN  E+++  +A
Sbjct: 172 -FNKKTTEWMLSYDGRKEEPVTLPIKFPLLLAQGSDGIAVGLASKILPHNFVELINAAIA 230

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   D  L         PDFPTG +        + Y  G   G++ +R          D
Sbjct: 231 HLQGRDFQLY--------PDFPTGGMAD-----VSRYNDGLRGGTVKVRAKIS----KID 273

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
           +  + +TEIPY     ++ + I +     +        D++      +VI++    S+D 
Sbjct: 274 KRTLAITEIPYTTTTESIKDSIIKA--NDKGKIKIRKVDDNTADKVEIVIQVSPDESSDK 331

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   + N   +   KP    +  IL+      + ++    K  L +  +
Sbjct: 332 TIDALYAFTDCEVSIAPNSCVIWDEKPHFLGVSEILRRSAEHTKSLLGLELKIRLGELSE 391

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             H      I +   + + ++I    + E A                    +D       
Sbjct: 392 AWHAASLERIFIE--NRLYQLIEGCKSREEAYSA-----------------VDKGLEPFK 432

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++    + + EL+  R++    +      N +    ++          L     
Sbjct: 433 MRLRREVTLEDVQKLTELKFIRISRYDSEKAD---NEIRQIEEDLKSTQYDLDHLTEYAV 489

Query: 503 QELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
                ++D+      RRT +          +    E   V V++        L V RA+ 
Sbjct: 490 AYYERIRDKYGKGRERRTELR---------EFDSIEATKVAVTN------AKLYVDRAEG 534

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             G G      +       +   S    V+ F+  G     KV  
Sbjct: 535 FFGIG------KSMKDAEFVCDCSDIDDVIVFTKDGRYVITKVSD 573


>gi|226452065|gb|ACO59212.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452067|gb|ACO59213.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452069|gb|ACO59214.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452071|gb|ACO59215.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452073|gb|ACO59216.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452081|gb|ACO59220.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452083|gb|ACO59221.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  334 bits (857), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 129/173 (74%), Gaps = 3/173 (1%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG++A Y+A+  MAQ +S R  L++GQGN+G  D DP   AA RYTE +L K A  LL
Sbjct: 65  HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGVPD-DPKSFAAMRYTEAKLSKFADVLL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 124 GELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|124009385|ref|ZP_01694063.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
 gi|123985047|gb|EAY24998.1| topoisomerase IV subunit A [Microscilla marina ATCC 23134]
          Length = 663

 Score =  334 bits (857), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 132/533 (24%), Positives = 231/533 (43%), Gaps = 51/533 (9%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I++  ++ +L YA  VIL RA+P   DGLKPV RRIL  M +M    + +Y K A +
Sbjct: 7   KVTISEVYKDWFLDYASYVILERAVPSGYDGLKPVQRRILHAMKEMD---DGRYNKVANV 63

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQ 136
            G+ M +YHPHG+A+I DAL  M Q    + LL++ QGN+G +  GD  AA RY E RL 
Sbjct: 64  IGQAM-QYHPHGDASIGDALVNMGQ----KDLLVDTQGNWGDINTGDSAAAPRYIEGRLS 118

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+AT +  HN  
Sbjct: 119 KFALDVI--FNPQTTEWQLSYDGRKKEPVNLPVKFPLLLAQGTEGIAVGLATKVMPHNFN 176

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
           E++D  + ++   ++ +         PDF TG  +         Y  G     +R    I
Sbjct: 177 ELIDASIELLRGNEVTIY--------PDFATGGTMD-----VTNYRHGVKGGRLRVRVDI 223

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
           E+ S     I    +PY V    ++E I +     +I        ++  +   + + L  
Sbjct: 224 EQVSRKILAI--KNVPYGVTTENLIESIKKANDANKIKVKK--IIDNTAKDVEIQVHLST 279

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G   +  ++ LY +T+ +   S N   +   KP    +  +LK      ++++ +     
Sbjct: 280 GVEPEQTIDALYAFTNCEVSISPNACVILDDKPCFIKVEELLKINTQKTKDLLEQELLIR 339

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
            ++ +++        I +   + + R I      E                  +++ ID 
Sbjct: 340 KSELQEKMLYSSLEKIFIE--NRIYRDIEECETWE-----------------AVLETIDK 380

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                  D    + E     + E+++ R++          +  LG E+ E    L S   
Sbjct: 381 GLNPFKQDFYREIGEEDLIRLTEIKIKRISKFDSFKADELMKRLGDELAEVERNLKS--- 437

Query: 497 LLGIIKQELLSVKDELDTPR-RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L     +    +K +    R R  I++   D+  +D ++    +      G++
Sbjct: 438 LTKYAIRYFRELKKKYGKDRERRTIIQEFEDINAKDVVINNQKLYVNREDGFI 490


>gi|295134566|ref|YP_003585242.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
 gi|294982581|gb|ADF53046.1| DNA topoisomerase IV subunit A [Zunongwangia profunda SM-A87]
          Length = 873

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 158/815 (19%), Positives = 301/815 (36%), Gaps = 112/815 (13%)

Query: 1   MTEHIISSDEEEEKGITS--VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           M E+   S +E+        + +T   ++ +L YA  VIL RA+P + DG KPV RRI+ 
Sbjct: 1   MEENPEESKDEQLNKPKEELMRVTGMYKDWFLDYASYVILERAVPAMEDGFKPVQRRIMH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G
Sbjct: 61  SMKDLD---DGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDTQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++  GD  AA RY E RL K A  +L        +++ +YDG  +EPV L  ++P +L  
Sbjct: 113 NILTGDRAAAPRYIEARLSKFALEVLY--NPKLTEWQLSYDGRKKEPVNLPVKFPMLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           GG GIAVG++T +  HN  E++D  +  +      L         PDFPTG +       
Sbjct: 171 GGEGIAVGLSTRLLPHNFNELIDASIKHLQGKRFKL--------FPDFPTGGIAD----- 217

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            + Y  G+    +R  + I  +  D+  +V+TEIP+     ++++ +  L   ++     
Sbjct: 218 ISHYNDGKRGGRVRVRAKI--SQLDKNTLVITEIPFGTTTTSLIDSV--LKANEKGKIKI 273

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              +++      + I L    S D  ++ LY +T  ++  S     +   KPE   +  I
Sbjct: 274 KKIEDNTAAEVEIQIHLPNNISPDRTIDALYAFTQCENSLSPLGCVIVDNKPEFLGVSDI 333

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L++       ++ R  +  L++  ++ H                     S         +
Sbjct: 334 LRSSTDHTLHLLKRELEITLDELEEQWH-------------------FASLERIFIENRI 374

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +        + +I  ID+      +     ++E     + E+R+ R++    D  + ++
Sbjct: 375 YREIEEEETWEGVISAIDEGLKPHITHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKI 434

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVR 535
           ++L  EI      L     L+         +K++   D  R+T +         +     
Sbjct: 435 DALEDEIARIKHHL---DHLIDYAIDYFTKLKEKYGQDKDRKTELRLFEDIEASKVV--- 488

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
                       ++   L V R +   G                +   S    ++ F++ 
Sbjct: 489 ------------IRNTKLYVNRKEGFIGTAL--------KRDEYVTDCSDIDDIICFTAD 528

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +   KV      +    GK +I++    + ++ T       D                
Sbjct: 529 GKMMVTKVD-----TKTFIGKDIIHVAVFKKKDKRTIYNMIYRDGKGGTT---------- 573

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R  ++   +              D    +    +++ +L  +          + +  
Sbjct: 574 YVKRFAVTSVTR--------------DREYDLTQGKKDSKVLYFSANPNG----EAEVIT 615

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R    ++   L        + I              +K +  +   +S         
Sbjct: 616 VFLRQVGSIK--KLKFELDFSEILIKGRNVKGNIVTKYSVKRIELKEEGVSTLKPRKIWF 673

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +                   E  +L +++ G  K
Sbjct: 674 DDVVKRLNVDERGELLGEFKGEDRLLIITQDGIAK 708


>gi|265752343|ref|ZP_06088136.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
 gi|263237135|gb|EEZ22605.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 897

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 170/840 (20%), Positives = 300/840 (35%), Gaps = 149/840 (17%)

Query: 1   MTEHIISSDEEEEKGI----------TSVS---------ITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHSDYKPTDTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
             PDF TG  I       + Y  G   G + +R   +      D + + + E+P+     
Sbjct: 225 --PDFQTGGSID-----VSRYNDGERGGMVKVRAKIN----KIDNKTLSIAEVPFGKTVP 273

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + + I +   + +I         S++    +++ L  G S+D  L+ LY +T  +   S
Sbjct: 274 GVCDSIVKASEKGKIKIRKVEDLTSEK--VEILVHLAPGVSSDKTLDALYAFTDCEVSIS 331

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            N   ++  KP   T+  +LK        ++ +  +    +  +  H      I +    
Sbjct: 332 PNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERI 391

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
                   S N + A                  + ID+      S     +++     +L
Sbjct: 392 YKEVKFEQSENTDAAC-----------------EFIDERLTPFYSQFIREVTKEDILKLL 434

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPR 516
           ++++AR+    +D     +  +  +I+E   I +  + ++         +KD+     PR
Sbjct: 435 DIKMARILKFNKDKADENIARIKEQIEE---INNHLAHIVEYTIDWYQMLKDKYGKQYPR 491

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +         +     E                    +      +G  G  ++ +  
Sbjct: 492 RTELRNFDTIEAAKVVEANE--------------------KLYINREEGFIGTTLKKD-- 529

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
              +   S    V+ F   G     +V          +    +NI   N           
Sbjct: 530 -EFIANCSDIDDVIIFYKDGKYKVVRVTDK---MFVGKNVLYVNIFKKNDKR-------- 577

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                          T +  V R+    F  I R    ++    RD    V   T  + I
Sbjct: 578 ---------------TIYNVVYRDGKEGFHYIKRFNITSIT---RDREYDVTQGTPGSRI 619

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMAIVLHADAD 747
           +  T          +            V  I+L    ++           + I       
Sbjct: 620 VYFTANPNG----EAE-----------VIKITLKPNPRIKKIIYEKDFSDINIKGRQSMG 664

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +  ++ ++R  S           D                  ++ IL V E G
Sbjct: 665 NILSKYEVHKIALKQRGGSTLGGRKVWFDRDVLRLNYDGRGEYLGEFQSDELILIVHENG 724


>gi|254882315|ref|ZP_05255025.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319643075|ref|ZP_07997706.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
 gi|254835108|gb|EET15417.1| topoisomerase IV subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317385243|gb|EFV66191.1| topoisomerase IV subunit A [Bacteroides sp. 3_1_40A]
          Length = 897

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 169/840 (20%), Positives = 299/840 (35%), Gaps = 149/840 (17%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHLDYKPADTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
             PDF TG  I       + Y  G   G + +R   +      D + + + E+P+     
Sbjct: 225 --PDFQTGGSID-----VSRYNDGERGGMVKVRAKIN----KIDNKTLSIAEVPFGKTVP 273

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + + I +   + +I         S++    +++ L  G S+D  L+ LY +T  +   S
Sbjct: 274 GVCDSIVKASEKGKIKIRKVEDLTSEK--VEILVHLAPGVSSDKTLDALYAFTDCEVSIS 331

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            N   ++  KP   T+  +LK        ++ +  +    +  +  H      I +    
Sbjct: 332 PNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERI 391

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
                   S N + A                  + ID+            +++     +L
Sbjct: 392 YKEVKFEQSENTDAAC-----------------EFIDERLTPFYPQFIREVTKEDILKLL 434

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPR 516
           ++++AR+    +D     +  +  +I+E   I +  + ++         +KD+     PR
Sbjct: 435 DIKMARILKFNKDKADENITRIKEQIEE---INNHLAHIVEYTIDWYQMLKDKYGKQYPR 491

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +         +     E                    +      +G  G  ++ +  
Sbjct: 492 RTELRNFDTIEAAKVVEANE--------------------KLYINREEGFIGTALKKD-- 529

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
              +   S    V+ F   G     +V          +    +NI   N           
Sbjct: 530 -EFIANCSDIDDVIIFYKDGKYKVVRVTDK---MFVGKNVLYVNIFKKNDKR-------- 577

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                          T +  V R+    F  I R    ++    RD    V   T  + I
Sbjct: 578 ---------------TIYNVVYRDGKEGFHYIKRFNITSIT---RDREYDVTQGTPGSRI 619

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMAIVLHADAD 747
           +  T          +            V  I+L    ++           + I       
Sbjct: 620 VYFTANPNG----EAE-----------VIKITLKPNPRIKKIIYEKDFSDINIKGRQSMG 664

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +  ++ ++R  S           D                  ++ IL V E G
Sbjct: 665 NILSKYEVHKIALKQRGGSTLGGRKVWFDRDVLRLNYDGRGEYLGEFQSDELILIVHENG 724


>gi|212690851|ref|ZP_03298979.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|237712658|ref|ZP_04543139.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
 gi|212666580|gb|EEB27152.1| hypothetical protein BACDOR_00339 [Bacteroides dorei DSM 17855]
 gi|229453979|gb|EEO59700.1| topoisomerase IV subunit A [Bacteroides sp. 9_1_42FAA]
          Length = 897

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 170/840 (20%), Positives = 300/840 (35%), Gaps = 149/840 (17%)

Query: 1   MTEHIISSDEEEEKGI----------TSVS---------ITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHSDYKPTDTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
             PDF TG  I       + Y  G   G + +R   +      D + + + E+P+     
Sbjct: 225 --PDFQTGGSID-----VSRYNDGERGGMVKVRAKIN----KIDNKTLSIAEVPFGKTVP 273

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + + I +   + +I         S++    +++ L  G S+D  L+ LY +T  +   S
Sbjct: 274 GVCDSIVKASEKGKIKIRKVEDLTSEK--VEILVHLAPGVSSDKTLDALYAFTDCEVSIS 331

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            N   ++  KP   T+  +LK        ++ +  +    +  +  H      I +    
Sbjct: 332 PNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERI 391

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
                   S N + A                  + ID+      S     +++     +L
Sbjct: 392 YKEVKFEQSENTDAAC-----------------EFIDERLTPFYSQFIREVTKEDILKLL 434

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPR 516
           ++++AR+    +D     +  +  +I+E   I +  + ++         +KD+     PR
Sbjct: 435 DIKMARILKFNKDKADENIARIKEQIEE---INNHLAHIVEYTIDWYQMLKDKYGKQYPR 491

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +         +     E                    +      +G  G  ++ +  
Sbjct: 492 RTELRNFDTIEAAKVVEANE--------------------KLYINREEGFIGTTLKKD-- 529

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
              +   S    V+ F   G     +V          +    +NI   N           
Sbjct: 530 -EFIANCSDIDDVIIFYKDGKYKVVRVTDK---MFVGKNVLYVNIFKKNDKR-------- 577

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                          T +  V R+    F  I R    ++    RD    V   T  + I
Sbjct: 578 ---------------TIYNVVYRDGKEGFHYIKRFNITSIT---RDREYDVTQGTPGSRI 619

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMAIVLHADAD 747
           +  T          +            V  I+L    ++           + I       
Sbjct: 620 VYFTANPNG----EAE-----------VIKITLKPNPRIKKIIYEKDFSDINIKGRQSMG 664

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +  ++ ++R  S           D                  ++ IL V E G
Sbjct: 665 NILSKYEVHKIALKQRGGSTLGGRKVWFDRDVLRLNYDGRGEYLGEFQSDELILIVHENG 724


>gi|150002814|ref|YP_001297558.1| DNA topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294777257|ref|ZP_06742712.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
 gi|149931238|gb|ABR37936.1| topoisomerase IV subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294448877|gb|EFG17422.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides vulgatus PC510]
          Length = 897

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 169/840 (20%), Positives = 299/840 (35%), Gaps = 149/840 (17%)

Query: 1   MTEHIISSDEEEEKGI-------------------TSVSITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHLDYKPADTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
             PDF TG  I       + Y  G   G + +R   +      D + + + E+P+     
Sbjct: 225 --PDFQTGGSID-----VSRYNDGERGGMVKVRAKIN----KIDNKTLSIAEVPFGKTVP 273

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + + I +   + +I         S++    +++ L  G S+D  L+ LY +T  +   S
Sbjct: 274 GVCDSIVKASEKGKIKIRKVEDLTSEK--VEILVHLAPGVSSDKTLDALYAFTDCEVSIS 331

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            N   ++  KP   T+  +LK        ++ +  +    +  +  H      I +    
Sbjct: 332 PNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERI 391

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
                   S N + A                  + ID+            +++     +L
Sbjct: 392 YKEVKFEQSENTDAAC-----------------EFIDERLTPFYPQFIREVTKEDILKLL 434

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPR 516
           ++++AR+    +D     +  +  +I+E   I +  + ++         +KD+     PR
Sbjct: 435 DIKMARILKFNKDKADENIARIKEQIEE---INNHLAHIVEYTIDWYQMLKDKYGKQYPR 491

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +         +     E                    +      +G  G  ++ +  
Sbjct: 492 RTELRNFDTIEAAKVVEANE--------------------KLYINREEGFIGTALKKD-- 529

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
              +   S    V+ F   G     +V          +    +NI   N           
Sbjct: 530 -EFIANCSDIDDVIIFYKDGKYKVVRVTDK---MFVGKNVLYVNIFKKNDKR-------- 577

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                          T +  V R+    F  I R    ++    RD    V   T  + I
Sbjct: 578 ---------------TIYNVVYRDGKEGFHYIKRFNITSIT---RDREYDVTQGTPGSRI 619

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMAIVLHADAD 747
           +  T          +            V  I+L    ++           + I       
Sbjct: 620 VYFTANPNG----EAE-----------VIKITLKPNPRIKKIIYEKDFSDINIKGRQSMG 664

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +  ++ ++R  S           D                  ++ IL V E G
Sbjct: 665 NILSKYEVHKIALKQRGGSTLGGRKVWFDRDVLRLNYDGRGEYLGEFQSDELILIVHENG 724


>gi|320353625|ref|YP_004194964.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
 gi|320122127|gb|ADW17673.1| DNA topoisomerase IV subunit A [Desulfobulbus propionicus DSM 2032]
          Length = 670

 Score =  334 bits (856), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 134/515 (26%), Positives = 226/515 (43%), Gaps = 61/515 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E       +         +      ++L Y   VI  RAIPD+ DGLKPV RRIL   
Sbjct: 1   MSETTEQPRGK---------LHQLFDTNFLDYTSYVIRERAIPDVDDGLKPVQRRIL--- 48

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +    + ++ K A + GE M K HPHG+ +I+DAL  +A   +    LI+ QGNFG++
Sbjct: 49  QTLANMDDGRFHKVANVVGETM-KLHPHGDQSIFDALVNLA---NKGY-LIDRQGNFGNI 103

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  +A RY ECRL   A   L    KD  +F  +YDG  QEPV L A+ P +L+ G 
Sbjct: 104 FTGDQASAPRYIECRLSPLARETL--FNKDLTEFIDSYDGRMQEPVRLPAKIPLLLLLGA 161

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVGMAT I  HN GE++   +  +   +         +  PDFP G +I        
Sbjct: 162 EGIAVGMATKIMPHNFGELLQAQIDYLRGQE--------FVLYPDFPRGGIID-----VA 208

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G G I  R          D + IV+TE+PY +   A++E I +  +  ++   +  
Sbjct: 209 DYNHGNGRIRCRAKLE----QPDSKTIVITELPYNLTTQALIESIEKAAKANKLKIAS-- 262

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            ++   +   V I+L RG  A+  ++ LY +T  +   S ++V +    P +  +  +L+
Sbjct: 263 INDYTAEKVEVEIKLARGVLAEETIDALYAFTDCELSVSPSLVTIVDNMPRQMAVEEVLR 322

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                    + R  +  L +  D+ H      I +                      L +
Sbjct: 323 RNTDRLVANLERELQIELGRLEDKWHARKLEQIFIE-------------------ERLYK 363

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
           +    ++ K++   + DS     ++    ++      +LE+++ R++    +  + EL  
Sbjct: 364 QIEEKTNYKEVQATVRDSLLPFANELKRKITPEDVERLLEIKIRRISRYDINRQQKELRD 423

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +  +I +    L+    ++G     L  +  +  +
Sbjct: 424 IEKQIGQIKKHLTD---MIGFTVAYLGELAAKYGS 455


>gi|171912371|ref|ZP_02927841.1| DNA topoisomerase IV subunit A [Verrucomicrobium spinosum DSM 4136]
          Length = 678

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 139/541 (25%), Positives = 230/541 (42%), Gaps = 53/541 (9%)

Query: 1   MT-EHIISSDEEEEKGITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
           MT + ++        G     + DE+  + +L YA  VIL RA+P + DGLKPV RRIL 
Sbjct: 1   MTPDSLLPPSGPSHTGELHTKLVDELYGDWFLDYASYVILERAVPHINDGLKPVQRRILH 60

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++    + +Y K A + G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G
Sbjct: 61  SMREL---EDGRYNKVANVVGNTM-KYHPHGDASIGDAMVQLGQ----KELLIDTQGNWG 112

Query: 119 SV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           ++  GD  AA RY E RL K A  ++        ++  +YDG  +EPV L  ++P +L  
Sbjct: 113 NILTGDGAAASRYIESRLTKFALDVV--FSPKVTEWANSYDGRNKEPVTLPVKFPLLLAQ 170

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVG++  +  HN  E+ D CVA +      L         PDFP G ++      
Sbjct: 171 GVEGIAVGLSCRVLPHNFNELCDACVAALRGEPFQLL--------PDFPQGGIMDAAD-- 220

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y  G+    +R  + IE     R  + +TEIP+     ++ E I     EK  + I 
Sbjct: 221 ---YNDGQRGGKVRVRAKIETVPK-RNMVRITEIPFGTTAGSVQESIVA-ANEKGKIKIQ 275

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            + D +      +++ L  G   D  +  LY +T  +   SVN V +   KP   ++  I
Sbjct: 276 KVEDNTAEF-VEILVHLPSGTDPDQAIQALYAFTDCEVSISVNAVVIQDDKPNFISVTEI 334

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK+   + ++++ +  +  L +  ++ H      I +     + R I      +     +
Sbjct: 335 LKSNAEYAKQLLKQELEIELGELEEKWHFSSLEKIFIE--KRIYRDIEECTTWDGVIGAI 392

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +          L+                 ++E     + E+++ R++     +    +
Sbjct: 393 WKGLTP---YLGLLKR--------------EITEDDITKLTEIKIKRISKFNSFEADELI 435

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVR 535
             L  +I +    L     L          +K     D  RRT I         +  I  
Sbjct: 436 RGLESDIDQVQRYLKG---LTRYAISYFERIKKTYGKDRERRTVIAGFDRVAASDVAIAN 492

Query: 536 E 536
           E
Sbjct: 493 E 493


>gi|237723599|ref|ZP_04554080.1| topoisomerase IV subunit A [Bacteroides sp. D4]
 gi|229438052|gb|EEO48129.1| topoisomerase IV subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 897

 Score =  334 bits (856), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 170/840 (20%), Positives = 300/840 (35%), Gaps = 149/840 (17%)

Query: 1   MTEHIISSDEEEEKGI----------TSVS---------ITDEMQNSYLTYAINVILGRA 41
           M++  I  +E+ E+ I                       ++   QN +L YA  VIL RA
Sbjct: 1   MSDDFIDKEEQNEENIPTPENGHSDYKPTDTKNTGVKHQLSGMYQNWFLDYASYVILERA 60

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +P + DGLKPV RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ 
Sbjct: 61  VPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLG 116

Query: 102 QDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG 
Sbjct: 117 Q----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWQASYDGR 170

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+ L  ++P +L  G  GIAVG+++ I  HN  E+ D  +A +   +  L       
Sbjct: 171 NKEPITLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELCDASIAYLRGEEFKLY------ 224

Query: 221 RGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKA 278
             PDF TG  I       + Y  G   G + +R   +      D + + + E+P+     
Sbjct: 225 --PDFQTGGSID-----VSRYNDGERGGMVKVRAKIN----KIDNKTLSIAEVPFGKTVP 273

Query: 279 AMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS 338
            + + I +   + +I         S++    +++ L  G S+D  L+ LY +T  +   S
Sbjct: 274 GVCDSIVKASEKGKIKIRKVEDLTSEK--VEILVHLAPGVSSDKTLDALYAFTDCEVSIS 331

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
            N   ++  KP   T+  +LK        ++ +  +    +  +  H      I +    
Sbjct: 332 PNCCVIDEKKPHFLTVSAVLKKATDNTLSLLRQELEIHKGELLENLHFASLEKIFIEERI 391

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
                   S N + A                  + ID+      S     +++     +L
Sbjct: 392 YKEVKFEQSENTDAAC-----------------EFIDERLTPFYSQFIREVTKEDILKLL 434

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPR 516
           ++++AR+    +D     +  +  +I+E   I +  + ++         +KD+     PR
Sbjct: 435 DIKMARILKFNKDKADENIARIKEQIEE---INNHLAHIVEYTIDWYQMLKDKYGKQYPR 491

Query: 517 RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
           RT +         +     E                    +      +G  G  ++ +  
Sbjct: 492 RTELRNFDTIEAAKVVEANE--------------------KLYINREEGFIGTTLKKD-- 529

Query: 577 VTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPF 636
              +   S    V+ F   G     +V          +    +NI   N           
Sbjct: 530 -EFIANCSDIDDVIIFYKDGKYKVVRVTDK---MFVGKNVLYVNIFKKNDKR-------- 577

Query: 637 PEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDI 696
                          T +  V R+    F  I R    ++    RD    V   T  + I
Sbjct: 578 ---------------TIYNVVYRDGKEGFHYIKRFNITSIT---RDREYDVTQGTPGSRI 619

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI---------SMAIVLHADAD 747
           +  T          +            V  I+L    ++           + I       
Sbjct: 620 VYFTANPNG----EAE-----------VIKITLKPNPRIKKIIYEKDFSDINIKGRQSMG 664

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  +  ++ ++R  S           D                  ++ IL V E G
Sbjct: 665 NILSKYEVHKIALKQRGGSTLGGRKVWFDRDVLRLNYDGRGEYLGEFQSDELILIVHENG 724


>gi|29602633|gb|AAO85703.1| GyrA [Campylobacter jejuni]
          Length = 162

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 98/161 (60%), Positives = 123/161 (76%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+
Sbjct: 2   IKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGR 61

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YDAL RMAQD+S+R   I GQGNFGS+DGD  AA RYTE ++ K +H LL 
Sbjct: 62  YHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLK 121

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           D+ KDTVDF PNYDGS  EP VL +R PN+L+NG  GIAVG
Sbjct: 122 DIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVG 162


>gi|190888748|gb|ACE95999.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  334 bits (855), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 118/158 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY  + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYKTMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|37999014|dbj|BAD00077.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 176

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 91/174 (52%), Positives = 122/174 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HN
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHN 174


>gi|226452057|gb|ACO59208.1| topoisomerase IV subunit A [Vibrio vulnificus]
 gi|226452059|gb|ACO59209.1| topoisomerase IV subunit A [Vibrio vulnificus]
          Length = 181

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 91/173 (52%), Positives = 129/173 (74%), Gaps = 3/173 (1%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +++YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    KY K AR  G+V+GKY
Sbjct: 5   EDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSAAAKYKKSARTVGDVLGKY 64

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE +L K A  LL
Sbjct: 65  HPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTEAKLSKFADVLL 123

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            +LG+ TV+++PN+DG+ +EP +L AR P++L+NG  GIAVGMAT+IP HN+G
Sbjct: 124 GELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPPHNVG 176


>gi|110638041|ref|YP_678249.1| DNA topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280722|gb|ABG58908.1| topoisomerase IV subunit A [Cytophaga hutchinsonii ATCC 33406]
          Length = 859

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 149/738 (20%), Positives = 274/738 (37%), Gaps = 96/738 (13%)

Query: 1   MTEHIISSDEEE---EKGITSV-SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M + I ++  EE    + I  V  +    +N +L YA  VIL RA+P + DGLKPV RRI
Sbjct: 1   MAKDINNNSSEEQSGNEHIHDVVHVNGLYENWFLEYASYVILERAVPHINDGLKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L  M  M    + ++ K A + G  M +YHPHG+A+I DA+  M Q    + LLIE QGN
Sbjct: 61  LHAMRVMD---DGRFNKIANVIGSTM-QYHPHGDASIGDAIVNMGQ----KDLLIEPQGN 112

Query: 117 FGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +G +  GD  AA RY E RL K A  ++    +DT +++ +YDG  +EPV L  ++P +L
Sbjct: 113 WGDIRTGDSAAAPRYIEGRLSKFALDVV--FNEDTTEWQASYDGRKKEPVTLPVKFPLLL 170

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T +  HN  E+++  +AV+ N   ++         PDF TG  I    
Sbjct: 171 AQGVEGIAVGLSTKVLPHNFVELIEASIAVLKNKKFEI--------FPDFATGGFID--- 219

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G+    +R  + IE    D++ +V+ +IP+     +++E I +     +I  
Sbjct: 220 --VSNYNEGQKGSRVRVRARIEDM--DKKTLVIKDIPFGTTTTSLIESIVKANDTGKIKI 275

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
              + +    +   + ++L  G    + ++ LY +T  +S  S N   +   KP   ++ 
Sbjct: 276 KKVIDN--TAKDVEIQVQLLPGTDPGITIDALYAFTECESSISPNACVIVDDKPHFLSV- 332

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
                        +  R    L K   +      L           RI+  S        
Sbjct: 333 --------HEILRICTRQTVDLLKQELQIRRSELLE----------RILFSSLEKIFIEN 374

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            + ++       +D++  ID             ++      + E+++ R++         
Sbjct: 375 RIYRKIEECETWEDVLLTIDKGLQPFKKQFYRTITTEDIVRLTEIKIKRISKFDSFKADE 434

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR-RTRIVEGLLDMEDEDCIV 534
            +        E  ++  +   ++         +  +    R R   ++    +       
Sbjct: 435 LMRGYSN---ELKEVEHNLENIIDYSIAYYTGILKKYGKGRERKTEIKTFDVINATVVAA 491

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
               +      G++                               +   S    V+ F  
Sbjct: 492 NNQKLYINRAEGFIGFGLKKD----------------------EYICDCSDIDDVIVFRR 529

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G                   K +   + + +      I    +D   +N + +  A+ +
Sbjct: 530 DGICVV---------------KKIGEKVFVGKDILYAGIFRKGDDRMVYNLISLDGASGN 574

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLT---TKLGQCVRFPIS 711
             V+R  +    +      +     S+    S     +   + +T   T   +   F   
Sbjct: 575 SMVKRFNVMGVTREKEYPLVKANKASKVLYFSANPNGEAETVSVTLTPTSKAKIKVFDFD 634

Query: 712 -AIRVFAGRNSVGVRGIS 728
            +     GR++ G     
Sbjct: 635 FSTIEIKGRDTQGNILTK 652


>gi|86143381|ref|ZP_01061783.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
 gi|85830286|gb|EAQ48746.1| DNA topoisomerase IV subunit A [Leeuwenhoekiella blandensis MED217]
          Length = 875

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 162/815 (19%), Positives = 307/815 (37%), Gaps = 110/815 (13%)

Query: 1   MTEHIISSD----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           M+E+    +    E+E  G T   +T   ++ +L YA  VIL RA+P + DG KPV RRI
Sbjct: 1   MSENYEDPNLDQPEDENSGETITRVTGMFKDWFLDYASYVILERAVPAIEDGFKPVQRRI 60

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           +  M  +    + +Y K A I G  M +YHPHG+A+I DA+ +M Q    + LLI+ QGN
Sbjct: 61  MHSMKDLD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQMGQ----KDLLIDTQGN 112

Query: 117 FGS-VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +G+ + GD  AA RY E RL K A  +L        D++ +YDG  +EP+ L  ++P +L
Sbjct: 113 WGNTLTGDSAAASRYIEARLSKFALEVL--FSPKITDWQASYDGRRKEPINLPVKFPLLL 170

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T +  HN  E++D  V  ++     +         PDFP+        
Sbjct: 171 AQGAEGIAVGLSTKVLPHNFVELIDASVKHLEGKKFKIL--------PDFPSAGEAD--- 219

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G+    IR  + I  +  D+  +V+TEIP+     ++++ I +   +K  + 
Sbjct: 220 --FSDYKDGKRGGRIRVRAKI--SQLDKNTLVITEIPFTTTTTSLIDNILK-ANDKGKLK 274

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  + D +  Q   +++ L  G S D  +  LY +T+ +   S     +   KP    + 
Sbjct: 275 IKRIEDNTSSQ-VEILVHLPAGLSPDKTIGALYAFTNCEVSISPLGCVIEDNKPLFVGVS 333

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +L+      ++++ +  +  L +  ++ H      I +   + + R I      +    
Sbjct: 334 EMLRISTDRTKDLLRQELEIQLEELENQWHYASLERIFIE--NRIYRDIEEETTWDGVLH 391

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            + +          L   I      +  +  + L+E+        R+ R++    D  + 
Sbjct: 392 AINE---------GLKPHIGHLKRPVVEEDLVRLTEI--------RIKRISKFDIDKAQQ 434

Query: 476 ELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            + +L  +I E    L     L          +K E    R  +    L D         
Sbjct: 435 RIEALEDQIAEVKHHL---EHLTDYAIAYFKRLKKEFGAGRERKTEIKLFDDI------- 484

Query: 536 EDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
                         +V +   +      +G  G  ++ +++VTD    +    ++ F+  
Sbjct: 485 -----------EASKVVIRNTKLYVNRKEGFVGTSLKKDEYVTD---CADIDDIIVFTKE 530

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHG 655
           G +   KV      +    GK +I++    + ++ T       D                
Sbjct: 531 GVMMVTKVD-----TKTFVGKDIIHVAVFKKKDKRTIYNMLYRDGKGGAT---------- 575

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            V+R  ++   +              D    +    + + +L  +          + +  
Sbjct: 576 YVKRFNVTSVTR--------------DREYDMTKGKKGSQVLYFSANPNG----EAEVVS 617

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R    ++   L        + I              ++ +  + + +S         
Sbjct: 618 VYLRAVGNIK--KLKFDLDFSDILIKGRNANGNLATKHSVRTIELKEKGVSTLKPRKIWF 675

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +                   E  +L +++ G  K
Sbjct: 676 DDTVQRLNVDGRGELLGEFKGEDRLLIITQDGVVK 710


>gi|224536481|ref|ZP_03677020.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521923|gb|EEF91028.1| hypothetical protein BACCELL_01355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 892

 Score =  334 bits (855), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 166/817 (20%), Positives = 297/817 (36%), Gaps = 117/817 (14%)

Query: 3   EHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           E+ +    E           D           QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 13  ENGLPEGSEGHSDYKPADTKDVKAKYQLSGMYQNWFLDYASYVILERAVPHINDGLKPVQ 72

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ 
Sbjct: 73  RRILHSMRRL---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDC 124

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  ++P
Sbjct: 125 QGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFP 182

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ I  HN  E+ D  +  +   +  L         PDF TG  I 
Sbjct: 183 LLLAQGVEGIAVGLSSKILPHNFNELCDASIHYLHEEEFKLY--------PDFQTGGSID 234

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
                 + Y  G     +R  + IE    D + + + EIPY    A++ + I +   + +
Sbjct: 235 -----VSKYNDGERGGAVRIRAKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGK 287

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I         S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP   
Sbjct: 288 IKIKKVEDLTSG--NVEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFL 345

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T+  IL+  V     ++ +  +   ++  +  H      I +          R   + E 
Sbjct: 346 TVSNILRKSVDNTLSLLRQELEIRKDEILESLHFASLEKIFIEE--------RIYKDKEF 397

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + + M  +          + ID+            +++     ++E+++ R+     D 
Sbjct: 398 EQAQNMDAAC---------EHIDERLTPYYPQFVREVTKEDILKLMEIKMGRILKFNSDK 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDE 530
               +  +  +I+E    L++   ++       L +K++   + PRRT +         +
Sbjct: 449 AEELIARMKADIEEIDHHLAN---IVEYTVDWYLMLKNKYGKNFPRRTELRNFDTIEASK 505

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
                E                    +      +G  G  ++ +     L   S+   V+
Sbjct: 506 VVEANE--------------------KLYINREEGFIGTGLKKD---EFLSNCSSLDDVI 542

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F   G      V          +     N+   N    I  ++     E +        
Sbjct: 543 IFFRDGRYLVTPVSDK---KFVGKNILYANVFKKNDKRTIYNVVYRDGKEGTH------- 592

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
                 ++R  ++  I+              D    V   T ++ I+  T          
Sbjct: 593 -----YIKRFAVTSIIR--------------DREYDVTQGTPDSRIMYFTANPNG----E 629

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           + +     + +  VR I   +    I   I              +  ++ ++R  S    
Sbjct: 630 AEVIKVTLKPNPRVRRIIFEEDFSAIG--IKGRQARGNILTKLPVHKIALKQRGGSTLGG 687

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                  D                  +  IL V + G
Sbjct: 688 RKVWFDRDILRLNYDGRGEYLGEFQSDDSILVVHDNG 724


>gi|21732251|emb|CAD37174.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732253|emb|CAD37175.2| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|117654189|gb|ABK55525.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654191|gb|ABK55526.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654193|gb|ABK55527.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654195|gb|ABK55528.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654197|gb|ABK55529.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654199|gb|ABK55530.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654201|gb|ABK55531.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654203|gb|ABK55532.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654205|gb|ABK55533.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654207|gb|ABK55534.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 138/223 (61%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
 gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757]
          Length = 655

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 199/686 (29%), Positives = 321/686 (46%), Gaps = 66/686 (9%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            A   Y E +L K A  LL +LG+ TVD++PN+DG+ QEP +L AR P++L+NG  GIAV
Sbjct: 15  AAHALY-EAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAV 73

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYAT 243
           GMAT+IP HN+ EV D  + +IDNP+  L  LM+ ++GPDFPT   +I     ++  Y +
Sbjct: 74  GMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRS 133

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           GRGSI +R V   E +      IV+T +P+QV+ A +LE+IA  +R K++  + DLRDES
Sbjct: 134 GRGSIKMRAVWCKEGSD-----IVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDES 188

Query: 304 DRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360
           D +   R+VI  +      D+++N L+  T L+  F VN+  +    +P+   L+ IL  
Sbjct: 189 DHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSE 248

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +++FR E V  R +Y L+K   R H+L GL IA  NLDEV+ IIR   +P   +  LM R
Sbjct: 249 WISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR 305

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+++Q  AIL+ +L  L  L    IR E + L
Sbjct: 306 --------------------------FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDEL 339

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDEDCIVREDM 538
             E K+  ++L S  RL  ++K+E+ +  D+    RR+ +VE        + D +  E +
Sbjct: 340 EKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLMPSEAI 399

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
            V +S  G++        R  +        +  +  D         ++   +F  S G  
Sbjct: 400 TVVLSEKGWI--------RHAKGHNVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRS 451

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y  +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G   
Sbjct: 452 YSLESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGF 503

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--QENDILLTTKLGQCVRFPISAIRVF 716
             K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   
Sbjct: 504 VCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQL 563

Query: 717 AGRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +     G + I++        ++V+S  +VL   A         K       L +   E 
Sbjct: 564 S--KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGER 621

Query: 772 ITSLKNDSSVEGNISEERCQELKLKE 797
                        ++    +     E
Sbjct: 622 GRRGALLPRGLQRVTAIEIETSAEPE 647



 Score = 54.0 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 476 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 535

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 536 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 573


>gi|117654215|gb|ABK55538.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654217|gb|ABK55539.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  333 bits (854), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 139/223 (62%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LM+II GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMDIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|117654209|gb|ABK55535.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654213|gb|ABK55537.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654219|gb|ABK55540.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654221|gb|ABK55541.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654223|gb|ABK55542.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654225|gb|ABK55543.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654227|gb|ABK55544.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654229|gb|ABK55545.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654231|gb|ABK55546.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654233|gb|ABK55547.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654235|gb|ABK55548.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654237|gb|ABK55549.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 139/223 (62%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|110626537|gb|ABG79009.1| DNA gyrase subunit A [Chromobacterium haemolyticum]
          Length = 163

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 97/162 (59%), Positives = 125/162 (77%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y + VI+GRA+PD+RDGLKPVHRR+L+ M ++  +WN+ Y K ARI G+V+GKYHPHG+ 
Sbjct: 1   YVMGVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRAYKKSARIVGDVIGKYHPHGDT 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQD+SLR  L++GQGNFGSVDGD  AA RYTE R+ + AH LL D+ K+TV
Sbjct: 61  AVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDNAAAMRYTEIRMARIAHELLADIEKETV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           DF PNYDGS  EP++L A+ PN+L+NG   IAVG+   I  H
Sbjct: 121 DFGPNYDGSEHEPLILPAKIPNLLINGAPRIAVGVGPPISRH 162


>gi|37999024|dbj|BAD00082.1| DNA topoisomerase IV subunit C [Streptococcus porcinus]
          Length = 176

 Score =  333 bits (854), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 91/175 (52%), Positives = 123/175 (70%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMYKDGNTFEKGFRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + + 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K+TV F  N+D + +EP VL A YPN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKNTVPFAWNFDDTEKEPTVLPAAYPNLLVNGATGISAGYATDIPPHNL 175


>gi|313192119|emb|CBX19919.1| gyrase A [Clostridium perfringens]
          Length = 289

 Score =  333 bits (853), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 158/290 (54%), Positives = 218/290 (75%), Gaps = 1/290 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A+
Sbjct: 240 QKDVITRRTRFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAK 289


>gi|300726639|ref|ZP_07060075.1| DNA gyrase, A subunit [Prevotella bryantii B14]
 gi|299776077|gb|EFI72651.1| DNA gyrase, A subunit [Prevotella bryantii B14]
          Length = 912

 Score =  333 bits (853), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 147/708 (20%), Positives = 272/708 (38%), Gaps = 96/708 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K A + G  M ++
Sbjct: 55  KNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANVVGHTM-QF 110

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 111 HPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALETV- 165

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T +++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ +  HN  E+ +  +A
Sbjct: 166 -FNPKTTEWQFSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKVLPHNFIEICNAAIA 224

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   D  L         PDFPTG  I       + Y  G+   V++  + IE    D +
Sbjct: 225 YLKGEDFHLY--------PDFPTGGSID-----VSKYNDGQRGGVLKVRAKIE--KVDNK 269

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + V EIP+  N + ++E I + V + +I       +++      ++I L  G S+D  +
Sbjct: 270 TLAVREIPFSKNTSTLIESITKAVEKGKIKARK--IEDNTSAQAEILIHLAPGVSSDKTM 327

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP   T+  +L+        ++ +      ++  ++ 
Sbjct: 328 DALYAFTDCEINISPNCCVIEDQKPCFLTVSDVLRHSADRTMGLLRQELLIRKHELEEQL 387

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  I +         I      E A+ +            +++  ID         
Sbjct: 388 FFNSLERIFIE------ERIYKERKFEQAKNQ-----------DEVVAFIDSKLEPFKPS 430

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++      +LE+++ R+    +D     +  +  EI E    L++   ++G+    
Sbjct: 431 FIREVTREDIVRLLEIKMQRILKYNKDKADELIAKIKAEIAEIEKDLAN---MVGVTINW 487

Query: 505 LLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
              ++++      R   +    ++E    +     +      G+V               
Sbjct: 488 FEYLRNKYGEGHERLTEIRNFENIEVTKVVEANQKLYINRQEGFVGTGLKKD-------- 539

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS 623
                           +   S    ++ F   G     KV          +     NIL 
Sbjct: 540 --------------EFVCNCSDLDDIIIFYKDGKFKVIKVAD--------KIFVGKNILH 577

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +   ++             + +  + +      ++R  ++             +      
Sbjct: 578 VQVFKKNDKR---TIYNCVYRDGKLGWY----YIKRFNVTSMT--RDKLYDITQGKPGSR 628

Query: 684 ILSVETC-TQENDILLTT-----KLGQCVRFPISAIRV--FAGRNSVG 723
           +         E +++  T     K  +   F           GR + G
Sbjct: 629 VNYFTANPNGEAEVIKITLDPDPKKKKQNIFIEKDFAEIIIKGRAAKG 676


>gi|260172283|ref|ZP_05758695.1| DNA topoisomerase IV subunit A [Bacteroides sp. D2]
 gi|315920589|ref|ZP_07916829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694464|gb|EFS31299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 881

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 157/750 (20%), Positives = 290/750 (38%), Gaps = 112/750 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   E           DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEGHSDYKPADTRDENVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK       +++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLKKSADNTMDLLKQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACAHIDERLTP-----------------YYPTFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  EI E   I +  + ++         +K++   + PR T +      
Sbjct: 434 NSDKADELIAKMKEEIAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRHTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTTLKKD---EFVACCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK  +  +++ +     TI      +      
Sbjct: 528 DDVIIFFRDGKYIV-----TPVADKKFVGKN-VLYVNVFKKNDKRTIYNVAYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTT---- 700
           Y         V+R  ++  ++        + L + D  +         E +I+  T    
Sbjct: 582 Y---------VKRFAVTSVVRDREYD---VTLGTPDSRITYFSANPNGEAEIIKVTLKPN 629

Query: 701 -KLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            ++ + +     +     GR + G+    L
Sbjct: 630 PRVRRIIFEHDFSEVSIKGRQARGIILTRL 659


>gi|190888752|gb|ACE96001.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 158

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 118/158 (74%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDIAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
            ++ KDTVDF  NYD S QEPVVL + +PN+L NG  G
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSG 158


>gi|305666739|ref|YP_003863026.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
 gi|88708963|gb|EAR01197.1| DNA topoisomerase IV subunit A [Maribacter sp. HTCC2170]
          Length = 892

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 157/786 (19%), Positives = 283/786 (36%), Gaps = 106/786 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           ++ +L YA  VIL RA+P + DG KPV RRIL  + ++    + +Y K A + G  M +Y
Sbjct: 38  KDWFLDYASYVILERAVPAIEDGFKPVQRRILHSLKELD---DGRYNKVANVVGHTM-QY 93

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A  ++ 
Sbjct: 94  HPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDRAAASRYIEARLSKFALDVV- 148

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                  +++ +YDG  +EPV L  ++P +L  G  GIAVG++T +  HN  E++D  + 
Sbjct: 149 -FSPKITEWQLSYDGRKKEPVNLPVKFPLLLAQGAEGIAVGLSTKVLPHNFNELIDASIK 207

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +      L         PDFPT  +I       N Y  G     IR  + +  +  D+ 
Sbjct: 208 HLKGQRFKLY--------PDFPTAGIID-----VNNYNDGLRGGKIRVRARM--SQKDKN 252

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +V+ EIPY  N +++++ I  L    +        +++      +++ L  G S D  +
Sbjct: 253 TLVINEIPYGTNTSSLIDSI--LKANDKGKIKIKKIEDNTAADVEILVHLPSGISPDKTI 310

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +TS +S  S     +   KP    +  +LK       E++    +  L++  ++ 
Sbjct: 311 DALYAFTSCESSISPLSCIIEDNKPIFIGVSEMLKQSTDLTVELLKAELEIQLSELEEQW 370

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H      I +   + + R I      E                  +I  ID         
Sbjct: 371 HFASLERIFIE--NRIYRDIEEEETWE-----------------GVISAIDKGLKPHTKH 411

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++E     + E+R+ R++    D  +  L+SL  +I E    L++   L+      
Sbjct: 412 LKRAVTEEDIVRLTEIRIKRISKFDIDKAQQYLDSLEEKIAEVKHHLAN---LIDFAIDY 468

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
             ++K +    R            +       +    V     ++   L V R +   G 
Sbjct: 469 FKNLKTKYGKGR--------ERKSEIRVFDDIEATKVV-----IRNTKLYVNREEGFVGT 515

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
                          +   S    ++ F+  G     KV                     
Sbjct: 516 SL--------RRDEYVTDCSDIDDIIVFTKDGKAMITKVDSKTFIGKN------------ 555

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
                   I+     +            K G      +  F   + +      L    + 
Sbjct: 556 --------IIHVAVFKKKDKRTTYNMIYKDGKGGPTYIKRFNVTSVTRDRLYDLTPG-KP 606

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
           L+V        +   +          + +     R    ++   L        + I   A
Sbjct: 607 LTV--------VYYFSANPNG----EAEVVTVNLRQVGSIK--KLKWDVDFADVLIKGRA 652

Query: 745 DADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVS 804
                     +K +  + + +S          +                   +  +L ++
Sbjct: 653 SKGNIVTKYTVKRIELKEKGVSTLKPRKIWFDDVVRRLNVDGRGELLGEFRGDDLLLVIN 712

Query: 805 EKGFGK 810
           +KG  K
Sbjct: 713 QKGIAK 718


>gi|167764214|ref|ZP_02436341.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
 gi|167698330|gb|EDS14909.1| hypothetical protein BACSTE_02599 [Bacteroides stercoris ATCC
           43183]
          Length = 904

 Score =  333 bits (853), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 137/536 (25%), Positives = 233/536 (43%), Gaps = 51/536 (9%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
             +  +  +    ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    
Sbjct: 28  PADTNDANVKHQ-LSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---E 83

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  A
Sbjct: 84  DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAA 138

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL K A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+
Sbjct: 139 APRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGL 196

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           ++ I  HN  E+ D  V  +   +  L         PDF TG  I       + Y  G  
Sbjct: 197 SSKILPHNFNELCDASVKYLHKEEFKLY--------PDFQTGGNID-----VSKYNDGER 243

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
              +R  + IE    D + +V+ EIPY    A++ + I +   + +I         S   
Sbjct: 244 GGAVRVRAKIE--KVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSGS- 300

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK  V    
Sbjct: 301 -VEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQKPHFLTVSDVLKKSVDNTL 359

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            ++ R  +   N+  +  H      I +       +    + N + A   + +R      
Sbjct: 360 ALLRRELEIRRNEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTP--- 416

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 +S+     ++E+++AR+     D     +  +  +I+E
Sbjct: 417 --------------YYPTFIREVSKEDILKLMEIKMARILKFNSDKAEELIARMKADIEE 462

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
               L++   ++         +K++     PRRT +         +     E + +
Sbjct: 463 IDRHLAN---IVEYTVDWFRMLKEKYGKAFPRRTELRNFDTIDSTKVVEANEKLYI 515


>gi|293370569|ref|ZP_06617121.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298481614|ref|ZP_06999805.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|299147250|ref|ZP_07040315.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
 gi|292634303|gb|EFF52840.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides ovatus SD CMC
           3f]
 gi|298272155|gb|EFI13725.1| DNA topoisomerase 4 subunit A [Bacteroides sp. D22]
 gi|298514528|gb|EFI38412.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_23]
          Length = 881

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 157/750 (20%), Positives = 291/750 (38%), Gaps = 112/750 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   E           DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEGHSDYKPADTRDENVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK       +++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLKKSADNTMDLLKQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACAHIDERLTP-----------------YYPTFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  EI E   I +  + ++         +K++   + PR T +      
Sbjct: 434 NSDKADELIAKMKEEIAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRHTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTTLKKD---EFVACCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK ++  +++ +     TI      +      
Sbjct: 528 DDVIIFFRDGKYIV-----TPVADKKFVGKNVL-YVNVFKKNDKRTIYNVAYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTT---- 700
           Y         V+R  ++  ++        + L + D  +         E +I+  T    
Sbjct: 582 Y---------VKRFAVTSVVRDREYD---VTLGTPDSRITYFSANPNGEAEIIKVTLKPN 629

Query: 701 -KLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            ++ + +     +     GR + G+    L
Sbjct: 630 PRVRRIIFEHDFSEVSIKGRQARGIILTRL 659


>gi|163756899|ref|ZP_02164007.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
 gi|161323135|gb|EDP94476.1| DNA topoisomerase IV subunit A [Kordia algicida OT-1]
          Length = 880

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 156/818 (19%), Positives = 299/818 (36%), Gaps = 115/818 (14%)

Query: 1   MTEHIIS--SDEEEEKGITSVSITDE---MQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           M EH     ++ ++    +  +IT      ++ +L YA  VIL RA+P + DG KPV RR
Sbjct: 1   MEEHNEELHAENQQHNNNSQDTITKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I+  M  +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QG
Sbjct: 61  IMHSMKDLD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GD  AA RY E RL K A  ++        D++ +YDG   EPV L  ++P +
Sbjct: 113 NWGNILTGDRAAASRYIEARLSKFALDVVY--SPKITDWQLSYDGRKNEPVNLPVKFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  G  GIAVG++T I  HN  E++D  +  +      +         PDFPT  ++   
Sbjct: 171 LAQGAEGIAVGLSTKILPHNFIELIDASIKHLQGKRFQIY--------PDFPTSGIMD-- 220

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               + Y  G     +R  + I  +  D+  +V+TEIP+  N  +++E I  L    +  
Sbjct: 221 ---VSNYNDGLRGGKVRVRAKI--SQLDKNTLVITEIPFGTNTTSLIESI--LKANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      +++ L    S D  ++ LY +T+ +S  S     +   KP    +
Sbjct: 274 IKIKKIEDNTAADVEILVHLPNNISPDKTIDALYAFTNCESSISPLGCIIYDNKPLFIGV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       E++    +  L + +++ H                     S       
Sbjct: 334 SEMLRRSTDHTVELLKSELEIQLGELQEQWH-------------------FASLERIFIE 374

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             + +        + +I+ ID+      +     ++      + E+R+ R++    D  +
Sbjct: 375 NRIYREIEEEETWEGVINAIDEGLKPHITHLKRAVTVEDITRLTEIRIKRISKFDIDKAQ 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDC 532
            ++++L   I E    L++   L+         +K +      R+T I         +  
Sbjct: 435 QKIDALEETIAEVRHHLAN---LIDYAVSYFTRLKKQYGEGKERKTEIRIFDDVDARKVV 491

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
                          ++   L V R +   G                +   +    ++ F
Sbjct: 492 ---------------IRNTKLYVNREEGFIGTSLKK--------DEYVADCADIDDIIAF 528

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G +   KV      S    GK +I++    + ++ T       D     +       
Sbjct: 529 TRDGKMQVTKVD-----SKTFIGKNIIHVAIFKKKDKRTIYNMIYRDGKGGPS------- 576

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
               ++R  ++   +                       T+ + +   +          + 
Sbjct: 577 ---YIKRFAVTSVTRGKEYDLT--------------RGTKGSMVTYFSANPNG----EAE 615

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           I     R +  ++   L        ++I              +K +  + + +S      
Sbjct: 616 IVTILLRQAGSIK--KLKWDIDFADLSIKGRGVKGNLVTKYAIKRIELKEKGVSTLKPRK 673

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                                   E  +L +++KG  K
Sbjct: 674 IWFDETVQRLNVDGRGELIGEFRGEDRLLIINQKGELK 711


>gi|149346162|gb|ABR23652.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 151

 Score =  332 bits (852), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 92/151 (60%), Positives = 121/151 (80%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDVA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +YD + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD
Sbjct: 61  VYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVD 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           + PNYDG+   P V+  + PN+LVNG  GIA
Sbjct: 121 WVPNYDGTEMIPAVMPTKVPNLLVNGSSGIA 151


>gi|332171254|gb|AEE20509.1| DNA topoisomerase (ATP-hydrolyzing) [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 895

 Score =  332 bits (851), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 154/823 (18%), Positives = 298/823 (36%), Gaps = 123/823 (14%)

Query: 1   MTEHIISSDEEEEKGITSVS-------------ITDEMQNSYLTYAINVILGRAIPDLRD 47
           M+E I   +E+EE    ++              ++   ++ +L YA  VIL RA+P + D
Sbjct: 1   MSEEINDHNEDEELNPETLPAEVVDGGGETITRVSGMFEDWFLDYASYVILERAVPSIED 60

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           G KPV RRI+  + ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    +
Sbjct: 61  GFKPVQRRIMHALKELD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----K 112

Query: 108 LLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
            LLI+ QGN+G++  GD  AA RY E RL K A  ++        +++ +YDG  +EP+ 
Sbjct: 113 DLLIDTQGNWGNILTGDRAAASRYIEARLTKFALDVVY--NPKITEWQASYDGRKKEPIN 170

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFP 226
           L   +P +L +G  GIAVG++T +  HN  E++D  +  + +    L         PDFP
Sbjct: 171 LPVMFPMLLASGAEGIAVGLSTKVLPHNFIELIDASIKHLKDKKFTLY--------PDFP 222

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T  +          Y  G     +R  + I  +  D+  +V+TE+P+     ++++ I  
Sbjct: 223 TAGIADFTD-----YKDGMRGGKVRCRARI--SQQDKNTLVITELPFGQTTTSLIDSI-- 273

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           L    +        +++      +++ L  G S D  ++ LY +T+ ++  S     +  
Sbjct: 274 LKANDKGKIKIKKIEDNTSANVEILVHLPGGISPDKTIDALYAFTNCETSISPLSCVIEN 333

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            KP    +  +L+      ++++    +  L +  ++ H      I +   + + R I  
Sbjct: 334 NKPLFVGVTEMLRRSTDRTKDLLKAELEIQLGEFENQWHYASLERIFIE--NRIYRDIEE 391

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
               +                  +I  IDD            ++      + E+R+ R++
Sbjct: 392 QETWD-----------------GVIKAIDDGLKPHIGHLKRAVTVEDITRLTEIRIKRIS 434

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGL 524
               D  + ++++L  +I +    L +   L          +K +      R+T I    
Sbjct: 435 KFDIDKAQQKIDALEDQITQVKYHLDN---LTQYAIDYFTRLKKDYGKGKERKTEIKIFD 491

Query: 525 LDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
                                    +V L   +      +G  G  ++ +++VTD    S
Sbjct: 492 DI--------------------QAAKVVLRNTKLYVNRAEGFVGTSLKKDEYVTD---CS 528

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
               V+ F+  G +   KV                             I+     +    
Sbjct: 529 DIDDVIVFTKSGTMMVVKVESKTFIGKD--------------------ILHVAIFKKKDK 568

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
                   + GN     +  F   + +     KL    +   V               G 
Sbjct: 569 RTTYNMIYRAGNGLPTYVKRFNVTSVTRNNDYKLAGDQKSAQVLY-------FSANPNG- 620

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
                 + +     R    ++ + L        + I   +          +K +  + + 
Sbjct: 621 -----EAELVTVYLRAVASIKKLRLEID--FADVIIKGRSSKGNIVSKNAVKSVELKEKG 673

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           +S          N                   E  +L +++ G
Sbjct: 674 LSTLKPRKIWFDNTVQRLNLDERGDLLGEFRPEDRLLIINQHG 716


>gi|37999022|dbj|BAD00081.1| DNA topoisomerase IV subunit C [Streptococcus iniae]
          Length = 176

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/175 (52%), Positives = 122/175 (69%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + + 
Sbjct: 61  IMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEISG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +LL D+ K TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 YLLQDIEKYTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHNL 175


>gi|288930007|ref|ZP_06423848.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
 gi|288328666|gb|EFC67256.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A)
           [Prevotella sp. oral taxon 317 str. F0108]
          Length = 896

 Score =  332 bits (851), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 161/742 (21%), Positives = 278/742 (37%), Gaps = 60/742 (8%)

Query: 1   MTEHIISSDEEEE-----KGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLR 46
           M +     + EEE                     ++   QN +L YA  VIL RA+P++ 
Sbjct: 1   MADEKQQDENEEEGVETHSDYKPADRFDASAVHHLSGMYQNWFLDYASYVILERAVPNIA 60

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL +M Q    
Sbjct: 61  DGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ---- 112

Query: 107 RLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + LLI+ QGN+G++  GD  AA RY E RL K A   +      T  ++ +YDG  +EP+
Sbjct: 113 KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALDTV--FNPKTTQWQASYDGRNKEPI 170

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
            L  ++P +L  G  GIAVG+++ I  HN+ E+    +  +      L         PDF
Sbjct: 171 ALPVKFPLLLAQGAEGIAVGLSSKILPHNMRELCQAAIHYLKGEPFRL--------FPDF 222

Query: 226 PTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK 283
           PTG  I       + Y  G+  GSI +R          D + +V+ EIP+  N   ++E 
Sbjct: 223 PTGGSID-----ASRYNDGQRGGSIKVRAKIE----KLDNKTLVIREIPFSKNTTTLIES 273

Query: 284 IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
           I + V + +I       D++      + + L  G S+D  ++ LY ++  +   S N   
Sbjct: 274 ILKAVDKGKIKAKR--VDDNTAAEVEIQVHLAPGISSDKTIDALYAFSDCEINISPNCCV 331

Query: 344 LNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +   KP   T+  +L+  V     ++    +   ++  ++        I +       + 
Sbjct: 332 IEDNKPRFLTVSEVLRHNVDSTMGLLRMELQIRKDELLEQLFFSSLEKIFIEERIYKDKK 391

Query: 404 IRFSPNPETARRELMQRSWN--ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELR 461
              + N + A   +  R      + I++L          I     +  S+ +   +L   
Sbjct: 392 FENAENMDVAVEHIDNRLTPFKPNFIRELRREDIMRLMEIKMQRILKFSKDKADELLARI 451

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL------SVKDELDTP 515
              + G+  D       ++               RL  I   E +         ++L   
Sbjct: 452 KEEIAGIDHDLAHMTDVTIKWFKFLIDKYGKDHPRLTEIKSFETIEATKVVEANEKLYIN 511

Query: 516 RRTRIVEGLLDMEDEDCI-VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
           RR   +   L  ++  C     D ++     G  K + ++      +           D 
Sbjct: 512 RREGFIGTGLKKDEFVCNCSDIDDILVFHRDGKYKIMRVADKIFVGKNVLHVQVHKRNDR 571

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
               ++          F          +     +    A  K +    + N       ++
Sbjct: 572 RTTYNIVYRDGKEGHYFIKRFNITSATRDREYDLTQGTAGSKVVYFTANPNGEAETIRVI 631

Query: 635 PFPEDESSWNNLYVVFATKHGNVR-RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
             PE   S     V F      ++ R    + I      KI + L++    L       +
Sbjct: 632 LEPEAPPSRKKCIVDFDFSKVIIKARTSRGNIICKRPVKKIGL-LEAGHSTLGGRKVWFD 690

Query: 694 NDILLTTKL--GQCV-RFPISA 712
            D+        G+ +  F  + 
Sbjct: 691 PDVKRINYDDHGRLLGEFNEND 712


>gi|329956024|ref|ZP_08296795.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
 gi|328524783|gb|EGF51837.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides clarus YIT
           12056]
          Length = 904

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 138/530 (26%), Positives = 233/530 (43%), Gaps = 54/530 (10%)

Query: 18  SVSITDEM----QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
            VSI  ++    QN +L YA  VIL RA+P + DGLKPV RRIL  M +M    + +Y K
Sbjct: 33  DVSIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRRM---EDGRYNK 89

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
            A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E
Sbjct: 90  VANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDSAAAPRYIE 144

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  
Sbjct: 145 ARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILP 202

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HN  E+ D  V  +   +  L         PDF TG  I       + Y  G     +R 
Sbjct: 203 HNFNELCDASVKYLHKEEFKLY--------PDFQTGGNID-----VSKYNDGERGGAVRV 249

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE    D + +V+ EIPY    A++ + I +   + +I         S      +++
Sbjct: 250 RAKIE--KVDNKTLVIREIPYGKTVASVCDSIVKASEKGKIKIKKVEDLTSGS--VEILV 305

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
            L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +LK  V     ++ + 
Sbjct: 306 HLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDEQKPHFLTVSAVLKKSVDNTLALLRQE 365

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            +   N+  +  H      I +       +    + N + A   + +R            
Sbjct: 366 LEIRKNEILESLHFSSLEKIFIEERIYKDKEFEQAKNMDAACEHIDERLTP--------- 416

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           +++     ++E+++AR+     D     +  +  +I+E    L+
Sbjct: 417 --------YYPTFIREVTKEDILKLMEIKMARILKFNSDKAEELIARMKADIEEIDRHLA 468

Query: 493 SRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVV 540
           +   ++         +K++     PRRT +         +     E + +
Sbjct: 469 N---IVEYTVDWFRMLKEKYGKGFPRRTELRNFDTIDSTKVVEANEKLYI 515


>gi|313192091|emb|CBX19905.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 159/289 (55%), Positives = 217/289 (75%), Gaps = 1/289 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  +V F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYVNF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E A
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIA 288


>gi|21732260|emb|CAD37178.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|189502210|ref|YP_001957927.1| DNA topoisomerase IV subunit A [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497651|gb|ACE06198.1| hypothetical protein Aasi_0825 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 832

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 146/544 (26%), Positives = 236/544 (43%), Gaps = 57/544 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E II  +           I D  Q+ +L YA  VIL RA+P + DGLKPV RRIL  M
Sbjct: 1   MSEEIIPHNATIHDL---TPIGDMYQSWFLDYASYVILERAVPAIEDGLKPVQRRILHAM 57

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + +Y K A I G+ M +YHPHG+A+I +A+  + Q    + LLI+ QGN+G +
Sbjct: 58  KEMD---DGRYNKVANIIGQTM-QYHPHGDASIAEAIINLGQ----KELLIDMQGNWGDI 109

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E R    AH +L         ++ +YDG  +EPV    ++P +L  G 
Sbjct: 110 RTGDSAAAARYIEARPSSLAHAILY--SPQITSWQLSYDGRKKEPVTFPIKFPLLLAQGA 167

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG+AT I  HN  E+++G +AV+     +L         PDFPTG ++       +
Sbjct: 168 EGIAVGLATKILPHNFCELIEGAIAVLQGKTTNLL--------PDFPTGGLVDC-----S 214

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
           AY  G+    IR  + IE    D++ + + EIPY     +++E I       +I     +
Sbjct: 215 AYNEGKRGGRIRLRARIE--ILDKKTLAIREIPYGTTTNSLIESIIRAYERGKIKIKQVI 272

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            + ++     +++ L  G S DV+L+ LY +T  +   S N   +   KP    +  +L 
Sbjct: 273 DNTAE--DVEILVHLAPGQSPDVVLDALYVFTDCEIGISPNTCVIKDEKPTFIGVNELL- 329

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                  E    RTK +L +     H  +   I  A+L+++               + + 
Sbjct: 330 -------EYNTYRTKDILQQELTLQHKNLQEKILFASLEKLF------------IEKRIY 370

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELN 478
           R    S+  + + L  D             + E     + E+++ R++        + L 
Sbjct: 371 RDIEESETWEQVLLTIDQGLEPYKKQFYRAIIEDDLVRLTEIKIKRISKYDSQKAEDALL 430

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVRE 536
            L  E+ E    L     L     Q   ++  +      R+T I               +
Sbjct: 431 VLEKELAEVEHHLQ---HLTTFTIQYFKNLLKKYGAGKERKTEIRTFDTIEAHAVVANNQ 487

Query: 537 DMVV 540
            + +
Sbjct: 488 KLYI 491


>gi|1405716|emb|CAA97570.1| gyrase A subunit [Haemophilus influenzae]
          Length = 171

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 104/178 (58%), Positives = 132/178 (74%), Gaps = 7/178 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MT+ I SS       IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M
Sbjct: 1   MTDSIQSS-------ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSM 53

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            + G   NKKYVK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+
Sbjct: 54  DREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSI 113

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG
Sbjct: 114 DGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANG 171


>gi|14289141|gb|AAK57747.1| topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 165

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 91/166 (54%), Positives = 123/166 (74%), Gaps = 3/166 (1%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPH
Sbjct: 1   YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDL 146
           G++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +L
Sbjct: 61  GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLLSEL 119

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           G+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 120 GQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 165


>gi|117654345|gb|ABK55603.1| DNA gyrase subunit A [Bacillus halodurans]
          Length = 222

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 175/223 (78%), Gaps = 1/223 (0%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+ + RMAQD+S R +L++G GNFGS+DGD  AA RYTE R+ K +  L+ D+ KD
Sbjct: 1   DSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEARMSKISMELVRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +A+  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPPHQLGEVIDGVLALSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPTGA ILGR+GI+ AY TGRGSI +R  + IE+    +++I+V 
Sbjct: 121 DISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSITLRAKTEIEEH-HGKQRIIVH 179

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIAELVR+K+I  I DLRDESDR G R+VI
Sbjct: 180 EIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVI 222


>gi|237719816|ref|ZP_04550297.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
 gi|229451085|gb|EEO56876.1| topoisomerase IV subunit A [Bacteroides sp. 2_2_4]
          Length = 881

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 157/750 (20%), Positives = 290/750 (38%), Gaps = 112/750 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M++  I+   E           DE          QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSDE-INEITEGHSDYKPADTRDENVKHQLTGMYQNWFLDYASYVILERAVPHINDGLKP 59

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M ++    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 60  VQRRILHSMKRLD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 111

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T  ++ +YDG  +EPV L  +
Sbjct: 112 DCQGNWGNILTGDGAAAPRYIEARLSKFALDVV--FNPKTTKWKLSYDGRNKEPVTLPVK 169

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  ++ +   +  L         PDF TG  
Sbjct: 170 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASISYLRGEEFQLY--------PDFQTGGS 221

Query: 231 ILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I         Y  G   G++ +R   +      D + + +TEIPY    + +++ I + V
Sbjct: 222 ID-----VAKYNDGERGGAVKVRAKIN----KIDNKTLAITEIPYGKTTSTVIDSILKAV 272

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       D++      +++ L  G S+D  ++ LY +T  +   S N   ++  K
Sbjct: 273 DKGKIKIRK--VDDNTAANVEILVHLAPGTSSDKTIDALYAFTDCEVSISPNCCIIDDSK 330

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK       +++ +  +    +  +  H      I +       +    S 
Sbjct: 331 PHFLTVSKVLKKSADNTMDLLKQELEIKKGEILESLHFSSLEKIFIEERIYKDKEFEQSK 390

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           + + A   + +R                            +++     ++E+++ R+   
Sbjct: 391 DMDAACAHIDERLTP-----------------YYPTFIREVTKEDILKLMEIKMGRILKF 433

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
             D     +  +  EI E   I +  + ++         +K++   + PR T +      
Sbjct: 434 NSDKADELIAKMKEEIAE---IDNHLAHIVDYTVNWYQMLKNKYGKNFPRHTELRNFDTI 490

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
              +     E                    +      +G  G  ++ +     +   S  
Sbjct: 491 EAAKVVEANE--------------------KLYINREEGFIGTTLKKD---EFVACCSDI 527

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             V+ F   G          P+   +  GK ++  +++ +     TI      +      
Sbjct: 528 DDVIIFFRDGKYIV-----TPVADKKFVGKNVL-YVNVFKKNDKRTIYNVAYRDGKEGTT 581

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL--SVETCTQENDILLTT---- 700
           Y         V+R  ++  ++        + L + D  +         E +I+  T    
Sbjct: 582 Y---------VKRFAVTSVVRDREYD---VTLGTPDSRITYFSANPNGEAEIIKVTLKPN 629

Query: 701 -KLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            ++ + +     +     GR + G+    L
Sbjct: 630 PRVRRIIFEHDFSEVSIKGRQARGIILTRL 659


>gi|21732255|emb|CAD37176.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732258|emb|CAD37177.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732262|emb|CAD37179.1| DNA gyrase subunit A [Campylobacter coli]
 gi|21732264|emb|CAD37180.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  331 bits (849), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 100/154 (64%), Positives = 115/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 154


>gi|218258786|ref|ZP_03475064.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225218|gb|EEC97868.1| hypothetical protein PRABACTJOHN_00720 [Parabacteroides johnsonii
           DSM 18315]
          Length = 910

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 144/585 (24%), Positives = 241/585 (41%), Gaps = 77/585 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           Q+ +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 63  QDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 118

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 119 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALETV- 173

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E++D  VA
Sbjct: 174 -FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASVA 232

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   +  L         PDF TG  I       + Y  G   GS+ +R          D
Sbjct: 233 YLRGEEFTLY--------PDFQTGGYID-----VSKYNDGERGGSVKVRAKIT----KLD 275

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V++EIPY    + ++E I +   + +I       D++  +   +++ L  G S+D 
Sbjct: 276 NKTLVISEIPYGKTTSTLIESILKANDKGKIKIKK--VDDNTARNVEILVHLAPGVSSDK 333

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   +   KP   T+  +LK        ++  RT+  + K   
Sbjct: 334 TIDALYAFTDCEISISPNCCVIMDNKPHFLTVSDVLKHSTDDTLHLL--RTELEIQKGEL 391

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                  L  A      +   I      E A+           D+ + I  ID       
Sbjct: 392 E----ESLFFASLEKIFIEERIYKDKEFEEAK-----------DMDEAIAHIDKRLDPFK 436

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++      ++E+++ R+     D     +     EI +   I    + ++    
Sbjct: 437 PHFIREVTREDILKLMEIKMGRILKFNTDKCNATIAQYKEEIAK---IDDHLAHIVDYTV 493

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
              + +K++   + PR T +         +     E                    +   
Sbjct: 494 DWFMMLKEKYGKNYPRMTEVRNFDTIEATKVVEANE--------------------KLYI 533

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
              +G  G  ++ +     +   S    ++ F   G     KV  
Sbjct: 534 NRAEGFIGTGLKKD---EFVCNCSDIDDIILFYRNGTYKVVKVSE 575


>gi|317478494|ref|ZP_07937654.1| topoisomerase IV [Bacteroides sp. 4_1_36]
 gi|316905383|gb|EFV27177.1| topoisomerase IV [Bacteroides sp. 4_1_36]
          Length = 893

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 137/550 (24%), Positives = 234/550 (42%), Gaps = 59/550 (10%)

Query: 3   EHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKPVH 53
           +  + +  EE          D           QN +L YA  VIL RA+P + DGLKPV 
Sbjct: 13  DKELPAGSEEHSDYKPADAKDANIKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQ 72

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ 
Sbjct: 73  RRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLVDC 124

Query: 114 QGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  ++P
Sbjct: 125 QGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFP 182

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            +L  G  GIAVG+++ I  HN  E+ D  ++ + N +  L         PDF TG  I 
Sbjct: 183 LLLAQGVEGIAVGLSSKILPHNFNELCDASISYLHNEEFKLY--------PDFQTGGSID 234

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
                 + Y  G     IR  S IE    D + + + EIPY    A++ + I +   + +
Sbjct: 235 -----VSKYNDGERGGAIRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGK 287

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I         S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP   
Sbjct: 288 IKIRKVEDLTSGS--VEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPHFL 345

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           T+  +L+  V     ++ +  +    +  +  H      I +       +    + N + 
Sbjct: 346 TVSDVLRKSVDNTLALLRQELEIRKGEILESLHFASLEKIFIEERIYKDKEFEQAKNMDA 405

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           A   + +R                            +++     ++E+++AR+     D 
Sbjct: 406 ACEHIDERLTP-----------------YYPTFIREVTKEDILRLMEIKMARILKFNSDK 448

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDE 530
               +  +  +I+E    L++   ++         +KD+   D PR T +         +
Sbjct: 449 AEELIARMKKDIEEIDRHLAN---IVEYTVDWFRMLKDKYGKDFPRHTELRNFDTIEATK 505

Query: 531 DCIVREDMVV 540
                E + +
Sbjct: 506 VIEANEKLYI 515


>gi|117654281|gb|ABK55571.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D+ +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|313192099|emb|CBX19909.1| gyrase A [Clostridium perfringens]
          Length = 288

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 157/288 (54%), Positives = 216/288 (75%), Gaps = 1/288 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 239

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
           F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S   E
Sbjct: 240 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSE 287


>gi|117654343|gb|ABK55602.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 223

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 137/223 (61%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G RVVI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRVVI 223


>gi|117654255|gb|ABK55558.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654257|gb|ABK55559.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654259|gb|ABK55560.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654261|gb|ABK55561.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
 gi|117654263|gb|ABK55562.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 223

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|313192089|emb|CBX19904.1| gyrase A [Clostridium perfringens]
          Length = 286

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 156/286 (54%), Positives = 215/286 (75%), Gaps = 1/286 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYIN 239

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S  
Sbjct: 240 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 285


>gi|117654279|gb|ABK55570.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654283|gb|ABK55572.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654285|gb|ABK55573.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654287|gb|ABK55574.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654291|gb|ABK55576.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654307|gb|ABK55584.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654309|gb|ABK55585.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
 gi|117654341|gb|ABK55601.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 223

 Score =  331 bits (848), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|50660404|gb|AAT80772.1| gyrase A [Brevundimonas diminuta ATCC 11568]
          Length = 156

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 100/156 (64%), Positives = 125/156 (80%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+ RA+PD RDGLKPVHRRIL+ M  + +   + Y KCAR+ G+V+G++HPHG+A++Y 
Sbjct: 1   VIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKCARVVGDVLGRFHPHGDASVYM 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           AL RMAQD+S+ L+L++GQGNFGSVDGD PA+ RYTE ++  AA  LL D+ KDTVDF+P
Sbjct: 61  ALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAKMAPAAVALLTDIDKDTVDFQP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYD    EPVVL AR PN+LVNG GGIAVGMATNIP
Sbjct: 121 NYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIP 156


>gi|330996113|ref|ZP_08320006.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573884|gb|EGG55465.1| DNA gyrase/topoisomerase IV, A subunit [Paraprevotella xylaniphila
           YIT 11841]
          Length = 911

 Score =  330 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 158/751 (21%), Positives = 280/751 (37%), Gaps = 97/751 (12%)

Query: 1   MTEHIISSDEEEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLRDGLKP 51
           +T      D          +         ++   QN +L YA  VIL RA+P + DG KP
Sbjct: 11  LTTETPEEDNNAHSNYQPETNPHDSITHHLSGMYQNWFLDYASYVILERAVPHINDGFKP 70

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI
Sbjct: 71  VQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLI 122

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 123 DCQGNWGNILTGDSAAAPRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 180

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HNL E+ D  V  +      L         PDF TG  
Sbjct: 181 FPLLLAQGVEGIAVGLSSKILPHNLNEICDAAVNYLHGEPFQLY--------PDFLTGGS 232

Query: 231 ILGRTGIKNAYATG--RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
           I       + Y  G   G + +R          D + + + EIPY      +++ I + +
Sbjct: 233 ID-----VSKYNDGGRGGVVKVRAKIT----KIDNKTLAIREIPYGKTTTTLIDSILKAI 283

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
            + +I       +++      +++ L  G S+D  L+ LY +T  +   S N   ++  K
Sbjct: 284 EKGKIKVRK--VEDNTAAEVEILVHLTPGVSSDKALDALYAFTDCEVSISPNCCVIDDKK 341

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P   T+  +LK  V     ++ +       + ++  H       A      +   I    
Sbjct: 342 PCFLTVSEVLKRSVDNTLGLLRKELLIRKGELQESLHF------ASLEKIFIEERIYKDR 395

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
           N E A+           D+      ID+            +++     ++++++AR+   
Sbjct: 396 NFEQAK-----------DMDAACTHIDERLTPFYPQMIREVTQDDILKLMDIKMARILKF 444

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLD 526
            +D   + +  +  EI     I      ++ +       +K +   + PR T +      
Sbjct: 445 NKDKANDAIARMKDEIA---RIDRDLDNMVEVTCNWFRMLKAKYGNEHPRHTELRNFDTI 501

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
           +  +     E                    +      +G  G  ++ +     +   S  
Sbjct: 502 VATKVVEANE--------------------KLYINREEGFIGTSLKKD---EFIANCSDI 538

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
              + F   G     ++          R KA      +                 ++ + 
Sbjct: 539 DDAIIFYRDGTYKVIRISDKTFVGETERSKAEKKKAEIIHAAVFKRNDKRTIYNVAYRDG 598

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
              F      ++R  ++   +         K  SR    +     +   I +T K    +
Sbjct: 599 KDGFY----YIKRFNVTSITRDREYDLTQGKPFSRVVYFTANPNGEAEVIKITLKPALKL 654

Query: 707 R--FPISAIRVFA--GRNSVGVRGISLAKGD 733
           +  F           GR S+G     L+K +
Sbjct: 655 KKIFVEKDFSTVTIKGRQSMGNI---LSKNE 682


>gi|297621778|ref|YP_003709915.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
 gi|297377079|gb|ADI38909.1| DNA topoisomerase IV, subunit A [Waddlia chondrophila WSU 86-1044]
          Length = 633

 Score =  330 bits (847), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 135/509 (26%), Positives = 219/509 (43%), Gaps = 54/509 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I    +++Y+ YA  VIL RAIPD+ DGLKPV RRIL  + ++    + K  K A ++G
Sbjct: 3   DIKYLYKDNYIKYASYVILDRAIPDVVDGLKPVQRRILHTLYKI---HDGKLHKVANVAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           + M  YHPHG+AAI DAL  MA     +   ++ QGNFG++  GDP AA RY E RL   
Sbjct: 60  QTMA-YHPHGDAAIIDALVNMA----NKGFFLDCQGNFGNIYTGDPAAAARYIETRLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L     D  +   +YDG  QEPV L A+ P VL+ G  GIAVGM+TNI  HN  E+
Sbjct: 115 AKDTL--FNPDLTETVSSYDGRNQEPVCLPAKVPVVLMQGASGIAVGMSTNILPHNFIEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +AV++  D ++         PDF TG ++       + Y  GRG + +R    I+ 
Sbjct: 173 LQAEIAVLEGKDFEIY--------PDFITGGIMD-----VSEYDKGRGRLKLRAKIDIQD 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +V++EI +     +++  I E  +  +I    D  ++       + I+L RG 
Sbjct: 220 PK----TLVISEICHGTTTESLIRSIDEAAKRGKIKI--DSINDYTADKVEIEIKLPRGH 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +++ LY YT  +   +   + +  + P   T+  IL+      +  + +  +   +
Sbjct: 274 YAQDLIDSLYAYTDCEVSINCMCMVIKDHLPWETTVDEILRLHAELLKGYLKKELELEKD 333

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
                      L        E + I             L +          L   + DS 
Sbjct: 334 ---------RLLEKIFDKTLEQIFI----------ENRLYKHLETVKSSDKLRSTVADSL 374

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                  +   ++     +L++ + R++    D  +     +    KE   +      + 
Sbjct: 375 KPFHEQLSRVPTKDDIEKLLQIPIRRISKFDMDKNQ---EEIAGLRKELARVEKDLKSIK 431

Query: 499 GIIKQELLSVKDELDT--PRRTRIVEGLL 525
               + L  +  +      RRTR+ E   
Sbjct: 432 QFTIKYLKELVSKYRDIYTRRTRVGEIQE 460


>gi|117654265|gb|ABK55563.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654269|gb|ABK55565.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654271|gb|ABK55566.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654273|gb|ABK55567.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654275|gb|ABK55568.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654277|gb|ABK55569.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
 gi|117654311|gb|ABK55586.1| DNA gyrase subunit A [Bacillus sp. 3EC2A3]
          Length = 223

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 179/223 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|329964604|ref|ZP_08301658.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
 gi|328525004|gb|EGF52056.1| DNA gyrase/topoisomerase IV, A subunit [Bacteroides fluxus YIT
           12057]
          Length = 893

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 168/808 (20%), Positives = 298/808 (36%), Gaps = 108/808 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           EH      + +       ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M +
Sbjct: 22  EHSDYKPADAKDANVKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKPVQRRILHSMRR 81

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL++ QGN+G++  
Sbjct: 82  M---EDGRYNKVANIVGHTM-QFHPHGDASIADALVQLGQ----KDLLVDCQGNWGNILT 133

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  ++P +L  G  G
Sbjct: 134 GDSAAASRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVKFPLLLAQGVEG 191

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG+++ I  HN  E+ D  +  +   D  L         PDF TG  I       + Y
Sbjct: 192 IAVGLSSKILPHNFNELCDASIKYLHKEDFKLY--------PDFQTGGSID-----VSKY 238

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     +R  S IE    D + + + EIPY    A++ + I +   + +I        
Sbjct: 239 NDGERGGAVRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEKGKIKIRKVEDL 296

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
            S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP   T+  +L+  
Sbjct: 297 TSGS--VEILVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIDNQKPHFLTVSDVLRKS 354

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V    +++ +  +   N+ R+  H      I +          R   + E  + + M  +
Sbjct: 355 VNNTLDLLRQELEIRRNEIRENLHFASLEKIFIEE--------RIYKDKEFEQAKNMDAA 406

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                     + ID+            +++     ++E+++AR+     D     +  + 
Sbjct: 407 C---------EHIDNRLTPYYPTFIREVTKDDILRLMEIKMARILKFNSDKAEELIARMK 457

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMV 539
            +I+E    L++   ++         +K++   + PRRT +         +     E   
Sbjct: 458 ADIEEIDRHLAN---IVEYTVDWFRMLKEKYGKEFPRRTELRNFDTIEATKVIEANE--- 511

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
                            +      +G  G  ++ +     +   S    V+ F   G   
Sbjct: 512 -----------------KLYINREEGFIGTGLKKD---EFIANCSPIDDVIIFFRDGKYI 551

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
              V          +     NIL  N  ++      +                    ++R
Sbjct: 552 ITPVAD--------KKFVGKNILYANVFKKNDKRTIYNVCYRDGKEG-------TSYIKR 596

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++  ++              D    V   T ++ I   T          + I     +
Sbjct: 597 FAVTSVVR--------------DREYDVTQGTPDSRITYFTANPNG----EAEIIKVTLK 638

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            +  VR I   +     ++ I              +  ++ ++R  S           D 
Sbjct: 639 PNPRVRRIIFEED--FSAINIKGRQAMGNILTKLPVHKIALKQRGGSTLGGRKVWFDRDV 696

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKG 807
                 S          +  IL V   G
Sbjct: 697 LRLNYDSRGEYLGEFQSDDSILVVQNNG 724


>gi|254444676|ref|ZP_05058152.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258984|gb|EDY83292.1| DNA gyrase/topoisomerase IV, A subunit domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 679

 Score =  330 bits (846), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 131/540 (24%), Positives = 228/540 (42%), Gaps = 48/540 (8%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           +  ++ ++ EE+ G     + +  QN +L YA  VIL RA+P L DGLKPV RRI+  + 
Sbjct: 19  STELVPAETEEKSGNAKAPLANSYQNWFLEYASYVILDRAVPALLDGLKPVQRRIMHSLK 78

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-V 120
           ++    + +Y K A + G  M +YHPHG+A+IY A+  M Q    R LLI+ QGN+G+ +
Sbjct: 79  ELD---DGRYNKVANVVGHSM-RYHPHGDASIYSAMVGMGQ----RNLLIDTQGNWGNTL 130

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL   A  ++      T  ++ +YDG  +EP  L  ++P +L  G  
Sbjct: 131 TGDGAAAARYIEARLSPFARDVV--FNPKTTKWQLSYDGRNKEPTNLPVKFPLLLSEGAE 188

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG+A  I  HN  E++D  +  ++  + +L         PDF TG V          
Sbjct: 189 GIAVGLACKILPHNFNEIIDAAIYHLNGDEFELY--------PDFETGGVADFTN----- 235

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     +   +  +  S    QIV+ EIP+     ++++ I  L    +        
Sbjct: 236 YNDGLRGGRVLVRAVFDIVSK--YQIVIREIPFGCTTGSLIDSI--LSANSKGKIKIKKI 291

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           +++  +   ++I L  G+ A   ++ LY +T  Q   + N   +    P    +  +L+ 
Sbjct: 292 EDNTSEKAEILITLPPGSDAQATIDALYVFTDCQVSIAPNACIIEDDTPLFIGVSEMLRR 351

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                + ++    +  L +  ++ H      I +   + + R I      +    E+ + 
Sbjct: 352 SADNVKALLKLELEIKLAELEEKWHFDSLERIFIE--ERIYRRIEECETWDAVISEIHKG 409

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       +++     + E+R+ R++        +E+   
Sbjct: 410 LDP-----------------FKPTLKREVTDEDVARLTEIRIKRISKYNSFKANDEIKKT 452

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             EI+     L S ++      + L     +    RRTRI         E  +  E + V
Sbjct: 453 EKEIRATKRNLKSLTKFATAYFENLKEKYGK-GRERRTRIESFETIKAAEVALPTEKLFV 511


>gi|154493432|ref|ZP_02032752.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
 gi|154086642|gb|EDN85687.1| hypothetical protein PARMER_02770 [Parabacteroides merdae ATCC
           43184]
          Length = 910

 Score =  330 bits (846), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 143/592 (24%), Positives = 241/592 (40%), Gaps = 77/592 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           Q+ +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y K A I G  M ++
Sbjct: 63  QDWFLDYASYVILERAVPHINDGLKPVQRRILHSMKRLD---DGRYNKVANIVGHTM-QF 118

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 119 HPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYIEARLSKFALETV- 173

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E++D  VA
Sbjct: 174 -FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKILPHNFNELLDASVA 232

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +   +  L         PDF TG  I       + Y  G   GS+ +R          D
Sbjct: 233 YLRGEEFTLY--------PDFQTGGYID-----VSKYNDGERGGSVKVRAKIT----KLD 275

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V++EIPY    + ++E I +   + +I       D++  +   +++ L  G S+D 
Sbjct: 276 NKTLVISEIPYGKTTSTLIESILKANDKGKIKIKK--VDDNTARNVEILVHLAPGVSSDK 333

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   +   KP   T+  +LK        ++  RT+  + K   
Sbjct: 334 TIDALYAFTDCEISISPNCCVIMDNKPHFLTVSDVLKHSTDDTLHLL--RTELEIQKGEL 391

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                  L  A      +   I      E A+           D+ + I  ID       
Sbjct: 392 E----ESLFFASLEKIFIEERIYKDKEFEEAK-----------DMDEAIAHIDRRLDLFK 436

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 ++      ++E+++ R+     D     +     +I +   I    + ++    
Sbjct: 437 PHFIREVTREDILKLMEIKMGRILKFNTDKCNATIAQYKEDIAK---IDDHLAHIVDYTA 493

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
              + +K++   + PR T +         +     E                    +   
Sbjct: 494 DWFMMLKEKYGKNYPRMTEVRNFDTIEATKVVEANE--------------------KLYI 533

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQ 612
              +G  G  ++ +     +   S    ++ F   G     KV         
Sbjct: 534 NRAEGFIGTGLKKD---EFVCNCSDIDDIILFYRNGTYKVVKVSEKMFVGRD 582


>gi|117654239|gb|ABK55550.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654241|gb|ABK55551.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654243|gb|ABK55552.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654245|gb|ABK55553.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654247|gb|ABK55554.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654249|gb|ABK55555.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654251|gb|ABK55556.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654253|gb|ABK55557.1| DNA gyrase subunit A [Bacillus atrophaeus]
 gi|117654293|gb|ABK55577.1| DNA gyrase subunit A [Bacillus sp. 3EC1b2]
          Length = 223

 Score =  330 bits (845), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|313192097|emb|CBX19908.1| gyrase A [Clostridium perfringens]
          Length = 285

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 156/285 (54%), Positives = 215/285 (75%), Gaps = 1/285 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S  
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKT 284


>gi|117654295|gb|ABK55578.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654297|gb|ABK55579.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654299|gb|ABK55580.1| DNA gyrase subunit A [Bacillus mojavensis]
 gi|117654303|gb|ABK55582.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|149278653|ref|ZP_01884789.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
 gi|149230648|gb|EDM36031.1| DNA topoisomerase IV subunit A [Pedobacter sp. BAL39]
          Length = 1019

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/499 (26%), Positives = 222/499 (44%), Gaps = 48/499 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +N +L YA  VIL RA+P + DGLKPV RRIL  + +M    + ++ K A + 
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHIHDGLKPVQRRILHSLKEMD---DGRFNKAANVI 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  AA RY E RL K
Sbjct: 75  GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDSAAAPRYIEARLSK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ +      DT  ++ +YDG   EP+ L  ++P +L  G  GIAVG+AT +  HN  E
Sbjct: 130 FANEV--AFNSDTTVWQLSYDGRNNEPITLPIKFPLLLAQGAEGIAVGLATKVMPHNFVE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  + V+     ++         PDF TG +        +AY  G     +R  + I 
Sbjct: 188 LLDASMEVLRGNRPNIL--------PDFFTGGMAD-----FSAYNEGMRGGKVRVRAKIT 234

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   D++ +V+TEIP+     ++++ I  L    +        +++      +V++L  G
Sbjct: 235 E--KDKKTLVITEIPFSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAANVEIVVQLAPG 290

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            S DV ++ LY +TS +   S N   + G KP   ++  IL       + ++ +  +  L
Sbjct: 291 ISPDVTIDALYAFTSCEVSISPNTCIIKGDKPHFMSVNDILTENTMHTKALLKQELEIRL 350

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           N+ +++      L I           I+                   + + +L +     
Sbjct: 351 NELQEKIFFSSLLKIF----------IQEGMYKHPEYENSGNFDAVVAVLNNLFEPFLPQ 400

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            Y               + +++  ++ +T         ++ +L  EIK   + L     L
Sbjct: 401 LYRPIQPEDF-------KKLIDKPMSSITRFDVKKADEQMQALADEIKVVKNHLR---HL 450

Query: 498 LGIIKQELLSVKDELDTPR 516
                     +KD+    R
Sbjct: 451 TDYAIAWFQKLKDKYGKGR 469


>gi|187734641|ref|YP_001876753.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424693|gb|ACD03972.1| DNA topoisomerase (ATP-hydrolyzing) [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 697

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 123/511 (24%), Positives = 217/511 (42%), Gaps = 51/511 (9%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +L YA  VIL RA+P + DG KPV RRIL  M ++    + +Y K A I G+ M K+HPH
Sbjct: 6   FLDYASYVILERAVPKINDGFKPVQRRILHAMDRLD---DGRYNKVANIVGDTM-KFHPH 61

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLG 147
           G+ +I DAL  + Q    + LLI+ QGN+G++  GDP AA RY E R    A  ++    
Sbjct: 62  GDRSIADALVGLGQ----KGLLIDTQGNWGNILTGDPAAASRYIEARFTSFARDVV--FS 115

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
               +++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I  HN  E+++  +A + 
Sbjct: 116 PKVTEWQLSYDGRNKEPVSLPVKFPLLLAQGAEGIAVGLSSKILPHNFNELIEASIAYLR 175

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
                L         PDFPTG V+            G G + IR     E        + 
Sbjct: 176 GQPFQLL--------PDFPTGGVMDATN--YRDGERGTGRVRIRARILTESKKL----LR 221

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +TEIP+ V    +++ I     + +I       +++  Q   +++ L  GA  +     L
Sbjct: 222 ITEIPFGVTTEILIDSIVSAAEKGKIKIAR--IEDNTAQHVDILVHLPAGADPEQTRKAL 279

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
           + +++ +   S N   +   KP    +  IL+      +E++ +  +  L +  +  H  
Sbjct: 280 FAFSACEVSISPNACVIVEEKPRFMCVSDILRYNTDSTKEILRQEQEIRLKELNEAWHQA 339

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
               I +   + +   I  S   E                 +++  ID       S    
Sbjct: 340 SLEKIFIE--NRIYLSIEDSETWE-----------------EVLGTIDRELQPFASRLRA 380

Query: 448 YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLS 507
            ++      + E+++ R++          +  L  +I        + ++L     +   +
Sbjct: 381 PITRDDLVRLTEIKIKRISKFDAFKADQHIRQLEEDI---EQTQKNLNQLTKFTIRWFEA 437

Query: 508 VKDEL--DTPRRTRIVEGLLDMEDEDCIVRE 536
           ++ +     PR+T I         +  +  E
Sbjct: 438 LRKKYGAAYPRKTEISSFGSVNRAQVAVANE 468


>gi|330864104|emb|CBX74176.1| hypothetical protein YEW_JA39640 [Yersinia enterocolitica W22703]
          Length = 387

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 144/408 (35%), Positives = 224/408 (54%), Gaps = 59/408 (14%)

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           + +I++EL+++K+  +  RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y 
Sbjct: 1   MEVIREELVAIKELYNDARRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYE 60

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
           AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ 
Sbjct: 61  AQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRP 120

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           ++N+L L   ERIT I+P  E E      ++  AT  G V++  L++F +   +G IA+ 
Sbjct: 121 IVNLLPLEPNERITAILPVREYE---EGRHIFMATASGTVKKTALTEFSRPRSAGIIAVN 177

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L+  DE++ V+     N+++L + LG+ VRFP S +R   GR + GVRGI+L   D+VIS
Sbjct: 178 LNEGDELIGVDLTDGTNEVMLFSALGKVVRFPESQVRSM-GRTATGVRGINLNGDDRVIS 236

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
           + I                                                        +
Sbjct: 237 LII-----------------------------------------------------PRGD 243

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
             ILTV+E G+GKRT+  ++   +R+ +G+ +  VS+ N  G +V    V   DQI++++
Sbjct: 244 GEILTVTENGYGKRTAVEEYPTKSRATQGVISIKVSERN--GKVVGAVQVAPTDQIMMIT 301

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           D GTL+R  V+E+ +  R T+GV +  T +DE VV ++R+ E E  D 
Sbjct: 302 DAGTLVRTRVSEVSVVGRNTQGVTLIRTTEDEHVVGLQRVAEPEEDDN 349


>gi|332043817|gb|EGI80012.1| DNA topoisomerase (ATP-hydrolyzing) [Lacinutrix algicola 5H-3-7-4]
          Length = 907

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 162/818 (19%), Positives = 298/818 (36%), Gaps = 115/818 (14%)

Query: 1   MTEHIISS-DEEEEKGITSVS----ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           MTE        E  +          IT   +  +L YA  VIL RA+P + DG KPV RR
Sbjct: 1   MTEDQNDDLTNENLENQEPQETITRITGMYKEWFLDYASYVILERAVPAIEDGFKPVQRR 60

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I+  M  +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QG
Sbjct: 61  IMHSMKDLD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQG 112

Query: 116 NFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           N+G++  GD  AA RY E R+ K    ++        +++ +YDG  +EPV L   +P +
Sbjct: 113 NWGNILTGDRAAASRYIEARISKFGLDVVY--NPKITEWQQSYDGRRKEPVNLPVMFPLL 170

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L  GG GIAVG++T I  HN  E+++  +  +      L         PDFPT  +    
Sbjct: 171 LAQGGEGIAVGLSTKILPHNFIELIEASIKHLQGKRFTLV--------PDFPTAGIAD-- 220

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               + Y  G     +R  + I  +  D+  + +TEIPY    +++++ I  L    +  
Sbjct: 221 ---FSNYNDGLRGGKVRVRAKI--SQVDKTTLAITEIPYGTTTSSLIDSI--LKANDKGK 273

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
                 +++      ++I L  G S D  ++ LY +TS +S  S     +   KP    +
Sbjct: 274 IKIKKIEDNTAAEVEILIHLPSGLSPDKTIDALYAFTSCESSISPLGCVIEDNKPLFIGV 333

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             +L+       +++ +  +  L +  ++ H      I +   + + R I      +   
Sbjct: 334 TEMLRRSTDNTVQLLKQELEIKLGEFEEQWHFASLERIFIE--NRIYRDIEEEETWD--- 388

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                          +I+ ID             ++      + E+R+ R++    D  +
Sbjct: 389 --------------GVINAIDKGLQPHIKHLKRAVTVEDITRLTEIRIKRISKFDIDKAQ 434

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDC 532
            ++++L  +I E    L++   L+         +K E      R+T I            
Sbjct: 435 QKIDALEEQIAEVKHHLAN---LIDYAIAYFSRLKKEYGEGKERKTEIR----------A 481

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               D    V     ++   L V R +   G                +   S    ++ F
Sbjct: 482 FEDVDATKVV-----IRNTKLYVNREEGFIGTSL--------RRDEYVCDCSDIDDIIAF 528

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G +   KV      S    GK +I++    + ++ T       D +   +       
Sbjct: 529 TASGKMMVTKVD-----SKTFIGKNIIHVAVFKKKDKRTIYNMIYRDGTKGAS------- 576

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
               ++R  ++   +          L +  +          + +   +          + 
Sbjct: 577 ---YIKRFAVTSMTRDREYD-----LTNGSK---------GSKLWYFSANPNG----EAE 615

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +     R    V+   L        + I   A          +K +  +   +S      
Sbjct: 616 VISVFLRQVGSVK--KLKWDIDFADILIKGRASKGNVVTKYAIKKIELKEEGVSTLKPRK 673

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
               +                   E  +L +++KG  K
Sbjct: 674 IWFDDAVQRLNVDGRGDLVGEFKGEDKLLIINQKGIVK 711


>gi|319900295|ref|YP_004160023.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
 gi|319415326|gb|ADV42437.1| DNA topoisomerase IV subunit A [Bacteroides helcogenes P 36-108]
          Length = 881

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 142/552 (25%), Positives = 236/552 (42%), Gaps = 63/552 (11%)

Query: 1   MTEHIISSDEEEEKGITSVSITDE---------MQNSYLTYAINVILGRAIPDLRDGLKP 51
           M+E       EE        I D           QN +L YA  VIL RA+P + DGLKP
Sbjct: 1   MSEDF----NEEHSDYKPADIKDTNVKHQLSGMYQNWFLDYASYVILERAVPHIMDGLKP 56

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL+
Sbjct: 57  VQRRILHSMRRM---EDGRYNKVANIVGHTM-QFHPHGDASIADALVQLGQ----KDLLV 108

Query: 112 EGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           + QGN+G++  GD  AA RY E RL K A  ++      T +++ +YDG  +EPV L  +
Sbjct: 109 DCQGNWGNILTGDSAAASRYIEARLSKFALDVV--FNPKTTEWKLSYDGRNKEPVTLPVK 166

Query: 171 YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
           +P +L  G  GIAVG+++ I  HN  E+ D  +  +      L         PDF TG  
Sbjct: 167 FPLLLAQGVEGIAVGLSSKILPHNFNELCDASIRYLHKEGFKLY--------PDFQTGGS 218

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           I       + Y  G     +R  S IE    D + + + EIPY    A++ + I +   +
Sbjct: 219 ID-----VSKYNDGERGGTVRVRSKIE--KIDNKTLAIKEIPYGKTVASVCDSIVKASEK 271

Query: 291 KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            +I         S      +++ L  G S+D  ++ LY +T  +   S N   ++  KP 
Sbjct: 272 GKIKIRKVEDLTSGS--VEILVHLAAGVSSDKTIDALYAFTDCEVSISPNCCVIDDQKPH 329

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             T+  +L+  V    +++    +   N+ R+  H      I +          R   + 
Sbjct: 330 FLTVSDVLRKSVDNTLDLLRLELEIRRNEIRESLHFASLEKIFIEE--------RIYKDK 381

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
           E  + + M  +          + ID             +++     ++E+++AR+     
Sbjct: 382 EFEQAKSMDAAC---------EHIDRRLTPYYPTFIREVTKEDILRLMEIKMARILKFNS 432

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDME 528
           D     +  +  +I+E    L++   ++         +KD+     PRRT +        
Sbjct: 433 DKAEELIARMKSDIEEIDRHLAN---IVEYTVDWYRMLKDKYGKGFPRRTELRSFDTIEA 489

Query: 529 DEDCIVREDMVV 540
            +     E + +
Sbjct: 490 TKVIEANEKLYI 501


>gi|294992605|gb|ADF57429.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/167 (53%), Positives = 120/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|117654301|gb|ABK55581.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  329 bits (844), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I    DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGXTDLRDESDRNGMRIVI 223


>gi|294672800|ref|YP_003573416.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
 gi|294473600|gb|ADE82989.1| topoisomerase gyrA/parC subunit family protein [Prevotella
           ruminicola 23]
          Length = 890

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 144/611 (23%), Positives = 255/611 (41%), Gaps = 83/611 (13%)

Query: 1   MTEHIISSDE-EEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLRDGLK 50
           M + I   ++ E+       +         ++   QN +L YA  VIL RA+P L DGLK
Sbjct: 1   MDDEIKEIEQSEQHSDYKPSNRFDAAAVHHLSGMYQNWFLDYASYVILERAVPHLGDGLK 60

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LL
Sbjct: 61  PVQRRILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLL 112

Query: 111 IEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           I+ QGN+G++  G   AA RY E RL K A   +      T +++ +YDG  +EP+ L  
Sbjct: 113 IDTQGNWGNILTGSSAAAPRYIEARLSKFALDTV--FNPKTTEWKMSYDGRNKEPITLPV 170

Query: 170 RYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           ++P +L  G  GIAVG+++ I  HN  E+ D  ++ +      L         PDFPT  
Sbjct: 171 KFPLLLAQGAEGIAVGLSSKILPHNFCEICDAAISYLHQQPFALY--------PDFPTSG 222

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            I       + Y  G+   VI+  + IE    D++ +V+ EIP+      + + I + + 
Sbjct: 223 SID-----VSKYNDGQRGGVIKVRAKIE--KIDQKTLVIREIPFSKTSETLQDSIVKAIE 275

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           + +I       ++       + + L  G S+D  ++ LY +T  +   S N   +   KP
Sbjct: 276 KGKIKARK--VEDLTAAEVEIQVHLAPGVSSDKTIDALYAFTDCEVSISPNCCVIEDNKP 333

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           +  T+  +L+  V   ++++ +  +    +  ++ H      I +       RI +    
Sbjct: 334 QFLTVSDVLRHSVERTKDLIRQELEIRKGELLEQLHFQSLERIFIEE-----RIYKD--- 385

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
                    ++   A ++  + + ID+            +++     +LE+++ R+    
Sbjct: 386 ---------KKFEQAPNVDAVCEHIDERLTPYYPQFIREVTKDDILKLLEIKMQRILKFN 436

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDM 527
           +D     +  L  EI+E   I    + L+ +       +KD+   D PR T I       
Sbjct: 437 KDKADELMARLKAEIEE---IDRDLANLVEVTANWFQFLKDKYGKDHPRLTEIRNFDTID 493

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             +     + + +  S  G++                               +   S   
Sbjct: 494 SAKVAEANQKLYINRS-DGFIGTGLKKD----------------------EFVCNCSDLD 530

Query: 588 SVLFFSSLGFV 598
            V+ F   G  
Sbjct: 531 DVIIFYKDGKY 541


>gi|1296993|emb|CAA64978.1| DNA gyrase subunit A [Rhizobium phaseoli]
          Length = 148

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 121/148 (81%), Positives = 137/148 (92%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VMGKYHPHGNAAIYDALARMAQ WS
Sbjct: 1   RDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAIYDALARMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LRL LI+GQGNFGSVDGDPPAAERYTECRL+KAAH LLDDL K+TVDFR NYDG+  EPV
Sbjct: 61  LRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDFRDNYDGTLSEPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           V+ A++PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VVPAKFPNLLVNGAGGIAVGMATNIPPH 148


>gi|255533353|ref|YP_003093725.1| DNA topoisomerase IV subunit A [Pedobacter heparinus DSM 2366]
 gi|255346337|gb|ACU05663.1| DNA topoisomerase (ATP-hydrolyzing) [Pedobacter heparinus DSM 2366]
          Length = 977

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 130/499 (26%), Positives = 221/499 (44%), Gaps = 48/499 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I    +N +L YA  VIL RA+P + DGLKPV RRI+  + +M    + ++ K A + 
Sbjct: 18  IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAANVI 74

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G  + GD  AA RY E RL K
Sbjct: 75  GNTM-KYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARLSK 129

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A+ ++     DT  ++ +YDG   EPV L  ++P +L  G  GIAVG+AT +  HN  E
Sbjct: 130 FANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++D  +  +     ++         PDF TG +        +AY  G     IR  + I 
Sbjct: 188 LLDASIEALQGHRPNIL--------PDFFTGGMAD-----FSAYNEGMRGGRIRVRAKIT 234

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           +   D++ +V+TEIPY     ++++ I  L    +        +++      +VI+L  G
Sbjct: 235 E--KDKKTLVITEIPYSTTTGSVIDSI--LSANDKGKIKIKKIEDNTAAHVEIVIQLAPG 290

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
            S DV ++ LY +TS +   S N   +   KP+  ++  IL       + ++ +  +  L
Sbjct: 291 ISPDVTIDALYAFTSCEVSISPNTCIIKDEKPQFLSVNDILIENSMHTKALLKKELEIKL 350

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           ++ +++      L I           I+            +        +  L +     
Sbjct: 351 HELQEKIFFSSLLKIF----------IQEGMYKNAEYENSVNFEMVVEVLNRLFEPFKPG 400

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            Y               + +++  ++ +T         ++ +L  EIK   + L     L
Sbjct: 401 LYREILPEDF-------KKLIDKPMSSITRFDVKKADEQMKALSDEIKVVKNHLR---HL 450

Query: 498 LGIIKQELLSVKDELDTPR 516
                     +KD+    R
Sbjct: 451 TEYAIAWFQKLKDKYGKGR 469


>gi|149199674|ref|ZP_01876706.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
 gi|149137191|gb|EDM25612.1| DNA topoisomerase IV subunit A [Lentisphaera araneosa HTCC2155]
          Length = 808

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 126/518 (24%), Positives = 214/518 (41%), Gaps = 54/518 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +   M  +++ YA  VI  RAIPD+ DGLKPV RRIL  + +     + K+ K A I G 
Sbjct: 33  LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFKAD---DGKFHKVANIVGA 89

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M  YHPHG+++IY AL  +A     +   IE QGNFG++  GD  +A RY ECRL   A
Sbjct: 90  CMA-YHPHGDSSIYGALVTVA----NKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     +T +F  +YDG  +EPV L A+ P +L+ G  GIAVGMAT I  HN  E++
Sbjct: 145 RETL--FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
              + ++     ++         PDF  G ++       + Y  GRG + +R    I   
Sbjct: 203 KAQIKILRGQRFEIY--------PDFLCGGIMD-----ISQYDFGRGKVTVRAKIDI--- 246

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             + + +V+ ++       +++  I E  +  +I   +     ++     + I L RG  
Sbjct: 247 -LNNKTLVIKQVAPGTTTESLMSSIEEAAKNGKIKIASIQDYTAEH--VEIEINLPRGVQ 303

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           AD  LN LY +T  +   S N+  +   +P+   +  +L         ++        NK
Sbjct: 304 ADWALNALYAFTQCEVSLSPNITVIQRGRPKEIHVGEVLHHNTQTLVNILRWELLNEQNK 363

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             ++ H             E + I             + ++    +   ++ + +     
Sbjct: 364 LNEKYH---------DRTLERIFI----------EERIYKKIEECTSQSEVFEAVRSGLK 404

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    +S+     +L + + R++    +    EL  +   +KE      +   L  
Sbjct: 405 PFLDQLRRDVSDEDIERLLRIPIRRISLFDINKNNKELEEILKALKEVAY---NLEHLKD 461

Query: 500 IIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVR 535
                + ++  +     PR T I         E  +  
Sbjct: 462 YTINFIKNLISKYGKQYPRLTEIKSIEKVDAKEIAVAN 499


>gi|117654267|gb|ABK55564.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  329 bits (843), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+  NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYXDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTXSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|150024744|ref|YP_001295570.1| DNA topoisomerase IV subunit A [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771285|emb|CAL42754.1| Topoisomerase IV subunit A [Flavobacterium psychrophilum JIP02/86]
          Length = 906

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 160/805 (19%), Positives = 310/805 (38%), Gaps = 108/805 (13%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++T +  HN  E++D  + ++      +         PDF T  +        + Y  G 
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFTIY--------PDFQTAGIAD-----VSNYNDGL 264

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I  +  D++ +V+T+IP+  N + +++ I  L   ++        +++  
Sbjct: 265 RGGRVRVRAKI--SQLDKQTLVITQIPFSTNTSTLIDSI--LKANEKGKIKIKKIEDNTA 320

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               ++I L  G S D  ++ LY +T+ ++  +     +   KP    +  +LK      
Sbjct: 321 AEVEILIHLFPGVSPDKSIDALYAFTACETSVAPLGCVIEDNKPLFIGVSAMLKISTHRT 380

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +++    +  L++  ++ H L    I +   +++ R I      E              
Sbjct: 381 VQLLKSELEIQLSELEEQWHFLSLERIFIE--NKIYRDIEDKTTREN------------- 425

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
               +I  +DD            ++E     +L++R+ R++    +  ++++ SL  +I 
Sbjct: 426 ----VIKAVDDGLKPHIKHLKRAVTEEDILRLLDIRIMRISKFDSNKAQDKIESLEGDI- 480

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
               +      L+         +K++    R              +         T+   
Sbjct: 481 --EQVKHDLENLIDFAIAYFTRLKEKYGKGR--------------ERQTELRSFDTIEAT 524

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
             V R      +      +G  G  ++ +++V D    S    V+ F   G +   KV  
Sbjct: 525 KVVLRNT----KLYVNKEEGFFGTGLKKDEYVAD---CSDIDDVIVFLRDGRLMISKVDD 577

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                 +  GK +I+I   ++ ++ T       D  + ++           ++R  +S  
Sbjct: 578 -----KKFVGKDIIHIAVFDKNDKRTIYNMIYRDGKNGSS----------FIKRFNVSGV 622

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +              D+  ++   T  + +L  +          + +     R    ++
Sbjct: 623 TR--------------DKAYNLTNGTAGSQVLYFSHNPNG----EAEVITILLRQVGSIK 664

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              L        +AI              +K +  + + IS          +        
Sbjct: 665 --KLKWDVDFADIAIKGRVSKGNTVSKYPIKKIELKEKGISTLRPRKVWFDDTVQRLNVD 722

Query: 786 SEERCQELKLKEQFILTVSEKGFGK 810
                         +L +++ G  K
Sbjct: 723 GRGELLGEFRPNDRLLIINQSGKLK 747


>gi|304384322|ref|ZP_07366733.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
 gi|304334638|gb|EFM00920.1| DNA topoisomerase 4 subunit A [Prevotella marshii DSM 16973]
          Length = 901

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 140/614 (22%), Positives = 242/614 (39%), Gaps = 82/614 (13%)

Query: 4   HIISSDEEEEKGITSVS---------ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHR 54
                 E        V          ++   QN +L YA  VIL RA+P + DGLKPV R
Sbjct: 14  ETEEPSEGAHSDYQPVDRFDASAVKHLSGMYQNWFLDYASYVILERAVPHIEDGLKPVQR 73

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL  M +M    + +Y K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ Q
Sbjct: 74  RILHSMKRMD---DGRYNKVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDTQ 125

Query: 115 GNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           GN+G++  G   AA RY E RL K A   +      T +++ +YDG  +EP+ L  ++P 
Sbjct: 126 GNWGNILTGSSAAAPRYIEARLSKFALETV--FNPKTTEWQLSYDGRNKEPITLPVKFPL 183

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +L  G  GIAVG+++ I  HN  E+ D  V+ +   +  +         PDFPTG  I  
Sbjct: 184 LLAQGAEGIAVGLSSKILPHNFNELCDAAVSCLRGEEFHVY--------PDFPTGGSID- 234

Query: 234 RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
                + Y  G+    ++  + IE    D + +V+ +IP+      +++ I + V + +I
Sbjct: 235 ----VSKYNDGQRGGTVKVRAKIE--KQDNKTLVIKDIPFSKTSETLIDSITKAVEKNKI 288

Query: 294 VDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT 353
                  ++       +++ L  G S+D  L+ LY +T  +   S N   +   KP+  T
Sbjct: 289 KVRK--VEDLTAANVEILVHLAPGVSSDKTLDALYAFTDCEINISPNCCVIEDNKPKFLT 346

Query: 354 LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           +  +L+        ++    +   N       ++  L  +      +   I         
Sbjct: 347 VSDVLRQSARQTMRLMKTELEIRRN------ELMEQLFFSSLEKIFIEERIYKER----- 395

Query: 414 RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                 R   A+D+      ID+            + +     ++E+++ R+    +D  
Sbjct: 396 ------RFEQAADMDAACSFIDEKLTPFYPQFVREVRKEDILRLMEIKMQRILKFNKDKA 449

Query: 474 RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDED 531
              +  +  E+      L +   L+ I     + +K++  +  PR T I         + 
Sbjct: 450 DELIARIKEEVAGIDRDLQN---LVEITCNWFIYLKEKYGSEHPRLTEIKNFETIEAVKV 506

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
               E                L + RA    G                +   S    ++ 
Sbjct: 507 AEANEK---------------LYINRADGFIGTAL--------KRDEFVCNCSDIDDIII 543

Query: 592 FSSLGFVYKEKVWR 605
           F   G     +V  
Sbjct: 544 FYRDGKYKVIRVAD 557


>gi|298498650|ref|ZP_07008457.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
 gi|297542983|gb|EFH79033.1| DNA gyrase, subunit A [Vibrio cholerae MAK 757]
          Length = 595

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 196/575 (34%), Positives = 306/575 (53%), Gaps = 42/575 (7%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE KR A  +V+LN LY  T LQ+ F +NMVAL+  +P+ F L  +LK FV  R E
Sbjct: 1   MRIVIECKRDAVGEVVLNNLYANTQLQTTFGINMVALDNGQPKLFNLKEMLKCFVDHRRE 60

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KAR+RAH+L GLA+A+AN+DE++ +IR +  P  A+  L+ R W+  ++
Sbjct: 61  VVTRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNV 120

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
             +++     +             DG  +L+E Q +AIL+LRL +LTGL  + I +E   
Sbjct: 121 AAMLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQ 180

Query: 480 LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
           L  EI   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+V
Sbjct: 181 LLEEIAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVV 240

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           VT+SH GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y
Sbjct: 241 VTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTY 300

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + KV++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++
Sbjct: 301 RMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKK 357

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA------- 712
             L  F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S        
Sbjct: 358 TSLDQFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDE 417

Query: 713 ------------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
                             +R   GR + GVRG+ LA GDQV+S+ IV   + D       
Sbjct: 418 NGQPVLDENGQPEIKFKGVRPM-GRTAAGVRGMKLADGDQVVSL-IVPKTEGDVLTVTEN 475

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                               + +    E N S     ++   ++F + ++  G   RT  
Sbjct: 476 GYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEF-MMITNAGTLVRTRV 534

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            +     R+ +G+     S+     ++V +  +++
Sbjct: 535 AEVSQVGRNTQGVTLIRTSEGE---SVVGLQRIDE 566



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/443 (15%), Positives = 142/443 (32%), Gaps = 52/443 (11%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
             E ++   K LL +     H+L      +  + E +  IR       ARR  +  + + 
Sbjct: 170 EHEKILDEYKQLLEEIAALMHILASTERLMEVIREELEAIRA--GFSDARRTEITAATHD 227

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
            D+++LI   D            Y  LS+ + +                  ++       
Sbjct: 228 IDMEELIAREDVVVTLSHEGYVKYQLLSDYEAQRRGG------------KGKSATKMKEE 275

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +  E L + ++   +L    +           P  +R   G   +        E +   +
Sbjct: 276 DYIERLLVANTHDNILLFSTRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAIL 335

Query: 543 --------------SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
                         +  G VK+  L  +   R  G     + +RDED +  + I    + 
Sbjct: 336 PVTEFSEDKFIFMATGDGTVKKTSLDQFANVRANG--LIALNLRDEDSLIGVDITDGESE 393

Query: 589 VLFFSSLGFVYKEKVWRL-------------PIGSPQARGK---ALINILSLNQGERITT 632
           ++ FS  G V + K                   G P+ + K    +    +  +G ++  
Sbjct: 394 IMLFSKFGKVVRFKESEETAVVDENGQPVLDENGQPEIKFKGVRPMGRTAAGVRGMKLAD 453

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVET 689
                          V+  T++G  +R  LS++    R  +  + +        ++    
Sbjct: 454 GDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQ 513

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             + ++ ++ T  G  VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +    
Sbjct: 514 VAEGDEFMMITNAGTLVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESEL 572

Query: 750 ERICYMKHMSAQRRLISGDTEEI 772
                    +        D E+ 
Sbjct: 573 PEGEEALVENDAPVAQDDDGEQE 595


>gi|294992579|gb|ADF57416.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992581|gb|ADF57417.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992587|gb|ADF57420.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992591|gb|ADF57422.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992599|gb|ADF57426.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/167 (53%), Positives = 120/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|117654167|gb|ABK55514.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654169|gb|ABK55515.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654171|gb|ABK55516.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654173|gb|ABK55517.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654175|gb|ABK55518.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654177|gb|ABK55519.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654179|gb|ABK55520.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654181|gb|ABK55521.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654185|gb|ABK55523.1| DNA gyrase subunit A [Bacillus licheniformis]
 gi|117654187|gb|ABK55524.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  329 bits (842), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|294992603|gb|ADF57428.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 90/167 (53%), Positives = 120/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+A+IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDASIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|260910051|ref|ZP_05916733.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635819|gb|EEX53827.1| DNA topoisomerase 4 subunit A [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 913

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 146/652 (22%), Positives = 253/652 (38%), Gaps = 92/652 (14%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           QN +L YA  VIL RA+P++ DGLKPV RRIL  M +M    + +Y K A I G  M ++
Sbjct: 57  QNWFLDYASYVILERAVPNIADGLKPVQRRILHSMKRMD---DGRYNKVANIVGHTM-QF 112

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL +M Q    + LLI+ QGN+G++  GD  AA RY E RL K A   + 
Sbjct: 113 HPHGDASIGDALVQMGQ----KDLLIDTQGNWGNILTGDRAAAPRYIEARLSKFALDTV- 167

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                T  ++ +YDG  +EP+ L  ++P +L  G  GIAVG+++ I  HN+ E+ +  + 
Sbjct: 168 -FNPKTTQWQASYDGRNKEPISLPVKFPLLLAQGAEGIAVGLSSKILPHNMRELCEAAIH 226

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +      L         PDFPTG  I       + Y  G+  GSI +R          D
Sbjct: 227 YLKGEPFRLY--------PDFPTGGSID-----ASRYNDGQRGGSIKVRAKIE----KLD 269

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + +V+ EIP+  N   +++ I + V + +I       D++      + + L  G S+D 
Sbjct: 270 SKTLVIREIPFSKNTTTLIDSILKAVDKGKIKAKR--VDDNTAAEVEIQVHLAPGVSSDK 327

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY ++  +   S N   +   KP   T+  +L+  V     ++    +   +    
Sbjct: 328 TIDALYAFSDCEINISPNCCVIEDNKPRFLTVSEVLRHNVDSTMGLLRLELQIRKD---- 383

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
              +L  L  +      +   I      E A            ++   ++ ID+      
Sbjct: 384 --ELLEQLFFSSLEKIFIEERIYKDKKFENA-----------ENMDAAVEHIDNRLEPFK 430

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D    L       ++E+++ R+    +D     L  +  EI     I    + +  +  
Sbjct: 431 PDFIRELRRDDIMRLMEIKMQRILKFSKDKADELLARIKEEIAG---IDHDLAHMTDVTI 487

Query: 503 QELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQR 560
           +    + ++   D PR T I         +     E + +     G++            
Sbjct: 488 KWFKFLIEKYGKDHPRLTEIKSFETIEATKVVEANEKLYINR-REGFIGTGLKKD----- 541

Query: 561 RGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALIN 620
                              +   S    +L F   G     +V          +     N
Sbjct: 542 -----------------EFVCNCSDIDDILVFHRDGKYKVMRVAD--------KIFVGKN 576

Query: 621 ILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG 672
           ++ +   +R      +          Y         ++R  ++   +     
Sbjct: 577 VMHVQVYKRNDRRTTYNVVYRDGKEGYYF-------IKRFNITSVTRDREYD 621


>gi|225164319|ref|ZP_03726587.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
 gi|224801081|gb|EEG19409.1| DNA topoisomerase (ATP-hydrolyzing) [Opitutaceae bacterium TAV2]
          Length = 732

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 139/636 (21%), Positives = 245/636 (38%), Gaps = 77/636 (12%)

Query: 5   IISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +I +  E  K   +  +    +N +L YA  VIL RA+P + DGLKPV RRIL  + +  
Sbjct: 64  VIPAAPEPPKNNDNAPLAHAYKNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTLWE-- 121

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGD 123
            + + ++ K A I G  M  YHPHG+A+I  AL  +AQ    R  LIE QGNFG+ + GD
Sbjct: 122 -KDDGRFHKVANIVGATMA-YHPHGDASIGAALVAIAQ----RGWLIEPQGNFGNALTGD 175

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RY E RL   A  +L      T  ++ +YDG  +EPV L A++P  L+ G  GIA
Sbjct: 176 DAAAPRYIEARLTPFAREVL--FNPKTTPWQLSYDGRAKEPVTLPAKFPVSLLEGADGIA 233

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VG+AT I  HN  ++    +  ++     +         PDF +G +        + Y  
Sbjct: 234 VGLATKILPHNFNDLCRAAINHLNGKKFRIV--------PDFASGGIAD-----FSEYND 280

Query: 244 GR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           G   G I IR    I      +  + +TE+PY     +++E I     + +I       D
Sbjct: 281 GERGGKIKIRAKIEI----RSKYLLAITELPYGATTVSLIESIVSANNKGKIKIRH--VD 334

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN---------------G 346
           ++      +++ L +G+ A+ ++NQLY +T  Q   S     +                 
Sbjct: 335 DNTADQVEILVHLPQGSDAEQVINQLYVFTDCQISISPAACVIEQVPARTGDDGREIPAQ 394

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P    +  IL+  V    +++ +  +  L +   + H    L       + + R I  
Sbjct: 395 DRPIFTGVSEILRRSVDKTVQLLKQELEIKLGELEQQWH-WDSLERIF-IEERIYRRIEN 452

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E                  ++  I D            ++E     + E+R+ R++
Sbjct: 453 SKTWEN-----------------VLQEIRDGLKPFVKKLRREITEDDITRLTEIRIKRIS 495

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLD 526
              R      +  +  +I     +    + ++         ++++    R+ R     ++
Sbjct: 496 AYNRFKADEAIKGIEADI---KQVKHDLAHIIPYTIAWFERLQEKYGKGRKRRTTYDEIE 552

Query: 527 MEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT------DL 580
                 +V  +  + V+       +    +            + +  +  +        +
Sbjct: 553 QISAAQVVAANQRLYVNRDEGFVGLNWRQHEFVTECTILDDVLCIMADGTMKVAKVADKV 612

Query: 581 FIVSTHTSVLFFSSLGF--VYKEKVWRLPIGSPQAR 614
           F+      V      G    Y         G   A+
Sbjct: 613 FMGRDIIHVAILPKDGDKKFYSLIYQDKESGKAFAK 648


>gi|86130200|ref|ZP_01048800.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
 gi|85818875|gb|EAQ40034.1| DNA topoisomerase IV subunit A [Dokdonia donghaensis MED134]
          Length = 893

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 151/825 (18%), Positives = 296/825 (35%), Gaps = 127/825 (15%)

Query: 1   MTEHIISSDEEEE---------------KGITSVSITDEMQNSYLTYAINVILGRAIPDL 45
           M+E I   +++EE               + IT VS     ++ +L YA  VIL RA+P +
Sbjct: 1   MSEEINDHNQDEELNSDMLSSQTGEGSGETITRVS--GMFEDWFLDYASYVILERAVPAI 58

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            DG KPV RRI+  + ++    + +Y K A + G  M +YHPHG+A+I DA+ ++ Q   
Sbjct: 59  EDGFKPVQRRIMHALKELD---DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ--- 111

Query: 106 LRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            + LLI+ QGN+G++  GD  AA RY E RL K A  ++        D++ +YDG  +EP
Sbjct: 112 -KDLLIDTQGNWGNILTGDRAAASRYIEARLSKFALDVVY--NPKITDWQASYDGRKKEP 168

Query: 165 VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD 224
           + L   +P +L  G  GIAVG++T +  HN  E++D  +  +      +         PD
Sbjct: 169 INLPVMFPLLLAQGAEGIAVGLSTKVMPHNFIELIDASIKHLKGKRFTIY--------PD 220

Query: 225 FPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
           FPT  +          Y  G     IR  + +  +  D+  +V+TE+P+     ++++ I
Sbjct: 221 FPTAGIADFTD-----YKDGLRGGKIRCRARM--SQQDKNTLVITELPFGQTTTSLIDSI 273

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
             L    +        +++      +++ L  G S D  ++ LY +T+ ++  S     +
Sbjct: 274 --LKANDKGKIKIKKIEDNTSANVEILVHLPSGISPDKTIDALYAFTNCETSISPLGCVI 331

Query: 345 NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
              KP    +  +L+      + ++    +  L +  ++ H      I +   + + R I
Sbjct: 332 EDNKPLFVGVSEMLRRSTDRTKALLKSELEIQLGEFENQWHYASLERIFIE--NRIYRDI 389

Query: 405 RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
                 +                  +I+ ID             ++      + E+R+ R
Sbjct: 390 EEQETWD-----------------GVIEAIDKGLKPHIGHLKRAVTVEDITRLTEIRIKR 432

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVE 522
           ++    D  + ++++L  +I +    L +   L          +K +      R+T I  
Sbjct: 433 ISKFDIDKAQQKIDALEDQIAQVKHHLDN---LTQYAIDYFTRLKKDYGKGKERKTEIRV 489

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                                      +V L   +      +G  G  ++ +++VTD   
Sbjct: 490 FDDI--------------------QAAKVVLRNTKLYVNRAEGFVGTSLKRDEYVTD--- 526

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
            S    ++ F+  G +   KV                             I+     +  
Sbjct: 527 CSDIDDIIVFTKSGSMMVVKVESKTFIGKD--------------------IIHVAIFKKK 566

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
                     + G+     +  F   + +     +L             +   +L  +  
Sbjct: 567 DKRTTYNMIYRAGSGLPTYVKRFNVTSVTRNNDYQLAGD---------KKGAQVLYFSAN 617

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
                   + +     R    V+ + L        + I   +          +K +  + 
Sbjct: 618 PNG----EAELVTVYLRAVASVKKLRLEVD--FADVLIKGRSSKGNIVSKNAVKSVELKE 671

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
           + +S                              +  +L +++ G
Sbjct: 672 KGLSTLKPRKIWFDETVQRLNLDERGDLLGEFRPDDRLLIINQHG 716


>gi|21732266|emb|CAD37181.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 154

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 99/154 (64%), Positives = 114/154 (74%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
           D RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD
Sbjct: 1   DARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQD 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           +S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  E
Sbjct: 61  FSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSE 120

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
           P VL AR PN+L+NG  GIA GMATNIP H+L E
Sbjct: 121 PDVLPARVPNLLLNGSSGIAGGMATNIPPHSLNE 154


>gi|150009781|ref|YP_001304524.1| DNA topoisomerase IV subunit A [Parabacteroides distasonis ATCC
           8503]
 gi|149938205|gb|ABR44902.1| topoisomerase IV subunit A [Parabacteroides distasonis ATCC 8503]
          Length = 911

 Score =  328 bits (841), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 244/598 (40%), Gaps = 77/598 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A   +      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIV 249
            HN  E++D  +A +   +  L         PDF TG  I         Y  G   GS+ 
Sbjct: 219 PHNFNELLDASIAYLRGEEFALY--------PDFQTGGSID-----IAKYNDGERGGSVK 265

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R          D + +V++EIPY    + ++E I +   + +I       D++  +   
Sbjct: 266 VRAKI----GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVE 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L        E++
Sbjct: 320 ILVHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLHHSTDRTLELL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               K    +          L  A      +   I   P  E A+            + +
Sbjct: 380 REELKIQKQEQE------EALFFASLEKIFIEERIYKDPEFENAKN-----------MDE 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I  ID             ++      ++E+++ R+     D     +     +I +   
Sbjct: 423 AISHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAK--- 479

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           I      ++         +K++     PR T I         +     E +        Y
Sbjct: 480 INDKLEHIIDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------Y 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           + R             +G  G+ ++ +     +   S    V+ F   G     KV  
Sbjct: 532 INRQ------------EGFIGMGLKKD---EFICNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|294992609|gb|ADF57431.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992613|gb|ADF57433.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 90/167 (53%), Positives = 120/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|331668933|ref|ZP_08369781.1| DNA gyrase subunit A [Escherichia coli TA271]
 gi|331064127|gb|EGI36038.1| DNA gyrase subunit A [Escherichia coli TA271]
          Length = 167

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 91/151 (60%), Positives = 121/151 (80%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           L K AH L+ DL K+TVDF  NYDG+ + P 
Sbjct: 127 LAKIAHELMADLEKETVDFVDNYDGTEKFPT 157


>gi|294992615|gb|ADF57434.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 91/167 (54%), Positives = 120/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+A+IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDASIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|313192103|emb|CBX19911.1| gyrase A [Clostridium perfringens]
          Length = 282

 Score =  328 bits (840), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 156/283 (55%), Positives = 215/283 (75%), Gaps = 1/283 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ IIR S
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSS 282


>gi|312977113|ref|ZP_07788862.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
 gi|310896441|gb|EFQ45506.1| DNA gyrase, A subunit [Lactobacillus crispatus CTV-05]
          Length = 415

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 146/465 (31%), Positives = 242/465 (52%), Gaps = 60/465 (12%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L + Q++AIL++RL RLTGL RD +  E   L  +I +  DILS   R+  II  ELL
Sbjct: 5   FGLDDKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELL 64

Query: 507 SVKDELDTPRRTRI-VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
            ++      RRT I    ++ +EDED I ++++++TV+H GY+KR+P+  ++ Q RGGKG
Sbjct: 65  DIQKRFGDKRRTEIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKG 124

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G+ ++D DF+  L   STH  +LFF++ G VY +K + +P     A+G  ++N+L L 
Sbjct: 125 IKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNLLQLE 184

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +GE++ T++  PE     ++ Y+ F TK G V+R  +S+F  I  SG IA+ L   DE+ 
Sbjct: 185 KGEKVQTVINIPEGA---DDNYLFFVTKMGTVKRTHVSEFSNIRNSGLIALTLKDGDELS 241

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +V T   + +IL+ T LG  V F    +R   GR + GVRGI+L + D V+   I+    
Sbjct: 242 NVLTTDGKQNILIGTHLGYAVTFNEGDVRAM-GRTAAGVRGINLREHDYVVGSGIL---- 296

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                              +  +L +SE
Sbjct: 297 -------------------------------------------------GADDQVLVISE 307

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           KG+GKRT + ++ +  R GKGI+  ++++ N  G L  V  +N N+ +++++  G +IR 
Sbjct: 308 KGYGKRTPASEYPVKGRGGKGIKTANITEKN--GPLAGVTIINSNNDVMVITTDGIMIRF 365

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            ++++    R+T GV +   + D +V S+  +   E  D+    +
Sbjct: 366 RIDDVSQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQDQTGDDD 410



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 87/230 (37%), Gaps = 17/230 (7%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ++ +  V+ +G VKR  +S +   R  G     + ++D D ++++       ++L  +
Sbjct: 199 ADDNYLFFVTKMGTVKRTHVSEFSNIRNSG--LIALTLKDGDELSNVLTTDGKQNILIGT 256

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
            LG+        +      A G   IN+   +                   +  V+  ++
Sbjct: 257 HLGYAVTFNEGDVRAMGRTAAGVRGINLREHDY---------VVGSGILGADDQVLVISE 307

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFP 709
            G  +R   S++  +   G   +K  +  E    +  V      ND+++ T  G  +RF 
Sbjct: 308 KGYGKRTPASEYP-VKGRGGKGIKTANITEKNGPLAGVTIINSNNDVMVITTDGIMIRFR 366

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           I  +    GR+++GVR I ++   QV S+ +V   +              
Sbjct: 367 IDDV-SQTGRSTMGVRLIKVSDDSQVASLTVVPTEEEQDQTGDDDDSKNG 415


>gi|262382912|ref|ZP_06076049.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
 gi|262295790|gb|EEY83721.1| topoisomerase IV subunit A [Bacteroides sp. 2_1_33B]
          Length = 911

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 162/724 (22%), Positives = 274/724 (37%), Gaps = 94/724 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DARVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A   +      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIV 249
            HN  E++D  +A +   +  L         PDF TG  I         Y  G   GS+ 
Sbjct: 219 PHNFNELLDASIAYLRGEEFALY--------PDFQTGGSID-----IAKYNDGERGGSVK 265

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R          D + +V++EIPY    + ++E I +   + +I       D++  +   
Sbjct: 266 VRAKI----GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVE 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+       E++
Sbjct: 320 ILVHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               K    +          L  A      +   I   P  E A+            + +
Sbjct: 380 REELKIQKQEQE------EALFFASLEKIFIEERIYKDPEFENAKN-----------MDE 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I  ID             ++      ++E+++ R+     D     +     +I +   
Sbjct: 423 AISHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAK--- 479

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           I      ++         +K++     PR T I         +     E +        Y
Sbjct: 480 INDKLEHIIDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------Y 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           + R             +G  G+ ++ +     +   S    V+ F   G     KV    
Sbjct: 532 INRQ------------EGFIGMGLKKD---EFICNCSDIDDVIIFYRNGTYKIVKVADKI 576

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS---D 664
                      I  +++ +     TI      +  +   Y+      G  R  +      
Sbjct: 577 FIGKD------ILYVNVFKRNDNRTIYNVIYRDGKFGYNYIKRFAVTGATRDREYDLTKG 630

Query: 665 FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
                     A      + +  +        +L+  K      F   AI    GR S G 
Sbjct: 631 MENSRVLYFSANPNGEAETVKVILKPKPRQKLLVFEKN-----FSEIAI---KGRGSQGN 682

Query: 725 RGIS 728
               
Sbjct: 683 ILTK 686


>gi|301312343|ref|ZP_07218260.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
 gi|300829765|gb|EFK60418.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 20_3]
          Length = 911

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 245/598 (40%), Gaps = 77/598 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A   +      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIV 249
            HN  E++D  +A +   +  L         PDF TG  I         Y  G   GS+ 
Sbjct: 219 PHNFNELLDASIAYLRGEEFALY--------PDFQTGGSID-----IAKYNDGERGGSVK 265

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R          D + +V++EIPY    + ++E I +   + +I       D++  +   
Sbjct: 266 VRAKI----GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVE 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+       E++
Sbjct: 320 ILVHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               K    +          L  A      +   I   P  E A+            + +
Sbjct: 380 REELKIQKQEQE------EALFFASLEKIFIEERIYKDPEFENAKN-----------MDE 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I  ID             ++      ++E+++ R+     D     +     +I +   
Sbjct: 423 AISHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAK--- 479

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           I      ++         +K++     PR T I         +     E +        Y
Sbjct: 480 INDKLEHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------Y 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           + R             +G  G+ ++ +     +   S    V+ F   G     KV  
Sbjct: 532 INRQ------------EGFIGMGLKKD---EFICNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|117654319|gb|ABK55590.1| DNA gyrase subunit A [Bacillus atrophaeus]
          Length = 223

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 175/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+T   +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETPSGKERILVP 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|256838469|ref|ZP_05543979.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
 gi|256739388|gb|EEU52712.1| topoisomerase IV subunit A [Parabacteroides sp. D13]
          Length = 911

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 245/598 (40%), Gaps = 77/598 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A   +      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIV 249
            HN  E++D  +A +   +  L         PDF TG  I         Y  G   GS+ 
Sbjct: 219 PHNFNELLDASIAYLRGEEFALY--------PDFQTGGSID-----IAKYNDGERGGSVK 265

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R          D + +V++EIPY    + ++E I +   + +I       D++  +   
Sbjct: 266 VRAKI----GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVE 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+       E++
Sbjct: 320 ILVHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               K    +          L  A      +   I   P  E A+            + +
Sbjct: 380 REELKIQKQEQE------EALFFASLEKIFIEERIYKDPEFENAKN-----------MDE 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I  ID             ++      ++E+++ R+     D     +     +I +   
Sbjct: 423 AISHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAK--- 479

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           I      ++         +K++     PR T I         +     E +        Y
Sbjct: 480 INDKLEHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------Y 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           + R             +G  G+ ++ +     +   S    V+ F   G     KV  
Sbjct: 532 INRQ------------EGFIGMGLKKD---EFICNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|255012928|ref|ZP_05285054.1| DNA topoisomerase IV subunit A [Bacteroides sp. 2_1_7]
          Length = 911

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 245/598 (40%), Gaps = 77/598 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A   +      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIV 249
            HN  E++D  +A +   +  L         PDF TG  I         Y  G   GS+ 
Sbjct: 219 PHNFNELLDASIAYLRGEEFALY--------PDFQTGGSID-----IAKYNDGERGGSVK 265

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R          D + +V++EIPY    + ++E I +   + +I       D++  +   
Sbjct: 266 VRAKI----GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVE 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+       E++
Sbjct: 320 ILVHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               K    +          L  A      +   I   P  E A+            + +
Sbjct: 380 REELKIQKQEQE------EALFFASLEKIFIEERIYKDPEFENAKN-----------MDE 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I  ID             ++      ++E+++ R+     D     +     +I +   
Sbjct: 423 AISHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAK--- 479

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           I      ++         +K++     PR T I         +     E +        Y
Sbjct: 480 INDKLEHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------Y 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           + R             +G  G+ ++ +     +   S    V+ F   G     KV  
Sbjct: 532 INRQ------------EGFIGMGLKKD---EFICNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|832878|gb|AAA67419.1| DNA gyrase [Aliivibrio salmonicida]
          Length = 147

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 94/147 (63%), Positives = 117/147 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRI 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ +SLR +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMA 187
            Q P VL  R PN+LVNG  GIAVGMA
Sbjct: 121 EQIPAVLPTRVPNLLVNGSSGIAVGMA 147


>gi|117654211|gb|ABK55536.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  327 bits (839), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 137/223 (61%), Positives = 176/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y++  RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESHVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVI 223


>gi|294992597|gb|ADF57425.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  327 bits (839), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IY A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYGAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|258648955|ref|ZP_05736424.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
 gi|260850558|gb|EEX70427.1| DNA topoisomerase 4 subunit A [Prevotella tannerae ATCC 51259]
          Length = 896

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 151/734 (20%), Positives = 272/734 (37%), Gaps = 112/734 (15%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +T   +N +L YA  VIL RA+P   DGLKPV RRIL  M ++    + +Y K A + G
Sbjct: 31  PLTGMYRNWFLDYASYVILERAVPHSDDGLKPVQRRILHAMKRLD---DGRYNKVANVVG 87

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
             M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY E RL K 
Sbjct: 88  HTM-QFHPHGDASIGDALVQLGQ----KNLLIDTQGNWGNILTGDDAAAPRYIEARLSKF 142

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  ++      T  ++ +YDG  +EP+ L  ++P +L  G  GIAVG++  I  HN GE+
Sbjct: 143 ALDVV--FNPKTTAWKLSYDGRNKEPIALPVKFPLLLAQGAEGIAVGLSAKILPHNFGEL 200

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHI 256
               +  +      +         PDF TG  I       + Y  GR  GS+ +R     
Sbjct: 201 CQAAIQYLRGEAFTIY--------PDFQTGGSID-----VSNYKEGRRGGSVKVRAKISK 247

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                + + +V+TEIP+     ++++ I  L   ++        D++      +++ L  
Sbjct: 248 LD---NNKTLVITEIPFGTTTQSIIDSI--LRANEKGKIKVRKVDDNTAAEVEILVHLAP 302

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
           G S+D  ++ LY +T  +   S N V +   KP   ++  +L+  V     ++    +  
Sbjct: 303 GTSSDKAIDALYAFTDCEVSISPNCVVITDKKPRFLSVNEVLQQSVDRTMSLLRSELEIR 362

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
            ++  +  H      I           I      + A  + +               ID+
Sbjct: 363 RHELLESLHYASLERIF----------IEERIYKDKAFEQAISTDAAC-------IHIDE 405

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       +++     +LE+++AR+    ++     +  +  ++      L++   
Sbjct: 406 RLTPYYPQFYREVTKEDILRLLEIKMARILKFNKEKADELIARMTADVARINKDLNN--- 462

Query: 497 LLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + G+       + D+   + PRRT +      +  +     +                  
Sbjct: 463 MTGVTINWFQLLFDKYAAEHPRRTELRSFDTIVASKVVEANQ------------------ 504

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
             +       G  G  ++ +     +   S    V+ F   G     +V          +
Sbjct: 505 --KLYVNRADGFMGTSLKKD---EFVDNCSDIDDVILFYRDGTYKVVRVADKVFIGRTEK 559

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                      +  R   ++     + +         T +  V R+       I R    
Sbjct: 560 S---------EKEHRKPELIHIAVFKKNDRR------TIYNIVYRDGKDGLCFIKRFNIT 604

Query: 675 AMKLDSRDEILSVETCTQENDILLTTK--LGQCVRF-----PISAIR-----------VF 716
            +     D        T  + I+  T    G+         P   +R           + 
Sbjct: 605 GIT---HDREYDATQGTPGSRIIYFTANPNGEAETIKVLLKPNPKLRKPFLDRDFSEILV 661

Query: 717 AGRNSVGVRGISLA 730
            GR S G     L 
Sbjct: 662 KGRQSRGNMLTKLD 675


>gi|298374175|ref|ZP_06984133.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
 gi|298268543|gb|EFI10198.1| DNA topoisomerase 4 subunit A [Bacteroides sp. 3_1_19]
          Length = 911

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 146/598 (24%), Positives = 245/598 (40%), Gaps = 77/598 (12%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T+  ++   QN +L YA  VIL RA+P + DGLKPV RRIL  M ++    + +Y 
Sbjct: 49  DTRVTTYHLSGMYQNWFLDYASYVILERAVPHINDGLKPVQRRILHSMRRLD---DGRYN 105

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYT 131
           K A I G  M ++HPHG+A+I DAL ++ Q    + LLI+ QGN+G++  GD  AA RY 
Sbjct: 106 KVANIVGHTM-QFHPHGDASIGDALVQLGQ----KDLLIDCQGNWGNILTGDGAAAPRYI 160

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K A   +      T  ++ +YDG  +EPV L  ++P +L  G  GIAVG+++ I 
Sbjct: 161 EARLSKFALETV--FNPKTTLWQLSYDGRNKEPVTLPVKFPLLLAQGVEGIAVGLSSKIL 218

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIV 249
            HN  E++D  +A +   +  L         PDF TG  I         Y  G   GS+ 
Sbjct: 219 PHNFNELLDASIAYLRGEEFALY--------PDFQTGGSID-----IAKYNDGERGGSVK 265

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           +R          D + +V++EIPY    + ++E I +   + +I       D++  +   
Sbjct: 266 VRAKI----GKLDNKTLVISEIPYGKTTSTVIESILKANDKGKIKIKK--VDDNTAKDVE 319

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
           +++ L  G S+D  ++ LY +T  +   S N   +   KP   T+  +L+       E++
Sbjct: 320 ILVHLAPGVSSDKTIDALYAFTDCEISISPNCCVIKEDKPHFLTVSDVLRHSTDRTLELL 379

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
               K    +          L  A      +   I   P  E A+            + +
Sbjct: 380 REELKIQKQEQE------EALFFASLEKIFIEERIYKDPEFENAKN-----------MDE 422

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            I  ID             ++      ++E+++ R+     D     +     +I +   
Sbjct: 423 AISHIDLRLEPFKPRFIREVTRDDILKLMEIKMGRILKFNSDKSNEFIAQTLEQIAK--- 479

Query: 490 ILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
           I      ++         +K++     PR T I         +     E +        Y
Sbjct: 480 INDKLEHIVDYTIDWFTMLKEKYGKAYPRHTVIRNFDTIEATKVVEANEKL--------Y 531

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
           + R             +G  G+ ++ +     +   S    V+ F   G     KV  
Sbjct: 532 INRQ------------EGFIGMGLKKD---EFICNCSDIDDVIIFYRNGTYKIVKVAD 574


>gi|117654313|gb|ABK55587.1| DNA gyrase subunit A [Bacillus sp. 3EC5B1]
          Length = 223

 Score =  327 bits (838), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 135/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRXPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|1834401|emb|CAA70292.1| DNA Gyrase subunit A [Chlorobium limicola]
          Length = 148

 Score =  327 bits (838), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 95/148 (64%), Positives = 115/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+GM ++G++  K + K ARI GEV+GKYHPHG+ A+YD+L RM QD+ 
Sbjct: 1   RDGLKPVHRRVLYGMHELGLQAGKPHKKSARIVGEVLGKYHPHGDTAVYDSLVRMVQDFL 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           LR  LI+GQGNFGSVDGD PAA RYTE R++  A  +L DL K+TVDF  N+D S +EP 
Sbjct: 61  LRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKPIAGEMLKDLDKETVDFSLNFDDSLEEPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL A  PN+LVNG  GIAVGMATNIP H
Sbjct: 121 VLPAAIPNLLVNGPSGIAVGMATNIPPH 148


>gi|308198967|dbj|BAJ22618.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308198971|dbj|BAJ22620.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199023|dbj|BAJ22646.1| DNA gyrase subunit A [Campylobacter coli]
 gi|308199057|dbj|BAJ22663.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 150

 Score =  327 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 98/150 (65%), Positives = 113/150 (75%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
           GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL 
Sbjct: 1   GRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALV 60

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQD+S+R   I+GQGNFGS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD
Sbjct: 61  RMAQDFSMRYPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYD 120

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            S  EP VL AR PN+L+NG  GIAVGMAT
Sbjct: 121 DSMSEPDVLPARVPNLLLNGSSGIAVGMAT 150


>gi|294992607|gb|ADF57430.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  327 bits (837), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 90/167 (53%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992583|gb|ADF57418.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  326 bits (836), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 89/167 (53%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDPSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992595|gb|ADF57424.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  326 bits (836), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 120/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|117654305|gb|ABK55583.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 223

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 175/223 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+G + AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGXRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVNKA ++EKIA+LV +K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNKARLIEKIADLVXDKKIEGITDLRDESDRNGMRIVI 223


>gi|832831|gb|AAA87239.1| DNA gyrase [Aeromonas salmonicida]
          Length = 147

 Score =  326 bits (836), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 90/147 (61%), Positives = 118/147 (80%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R+
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRL 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNYDG+
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMA 187
              P V+  + PN+LVNG  GIAVGMA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIAVGMA 147


>gi|294992585|gb|ADF57419.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|294992593|gb|ADF57423.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  326 bits (835), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 89/167 (53%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|257362148|gb|ACV53175.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG++A Y A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYKAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|13272211|gb|AAK15779.1| DNA gyrase subunit A [Aeromonas hydrophila]
          Length = 147

 Score =  325 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/147 (59%), Positives = 118/147 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + PN+LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|257362154|gb|ACV53177.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|255036406|ref|YP_003087027.1| DNA topoisomerase IV subunit A [Dyadobacter fermentans DSM 18053]
 gi|254949162|gb|ACT93862.1| DNA topoisomerase (ATP-hydrolyzing) [Dyadobacter fermentans DSM
           18053]
          Length = 914

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 124/529 (23%), Positives = 228/529 (43%), Gaps = 54/529 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E+  + D E+      + I+   +N +L YA  VIL RA+P + DGLKPV RRI+  +
Sbjct: 1   MDENGAAPDVEDSGLHDKLPISGLYENWFLDYASYVILERAVPAIEDGLKPVQRRIMHAL 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + ++ K A + G  M +YHPHG+A+IYDA+  + Q    + LL + QGN+G +
Sbjct: 61  NEMD---DGRFNKVANVVGSSM-QYHPHGDASIYDAIVNIGQ----KELLFDTQGNWGDI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL +    ++     DT +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 RTGDGAAAARYIEVRLSRFGKDVV--FNDDTTEWQLSYDGRKREPITLPVKFPLLLTLGV 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++  + ++   ++ +         PDF TG ++       +
Sbjct: 171 EGIAVGLSTKILPHNFCELIEASIGILQGKEVTIY--------PDFLTGGLVD-----VS 217

Query: 240 AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
            Y  G     +R  + IE+   D++ +V+ +IP+     +++E I +     +I      
Sbjct: 218 NYNDGHRGGKVRVRAKIEE--EDKKMLVIRDIPFGTTTTSLIESIIKANDAGKIKIKK-- 273

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             ++      + + L  G S D+ ++ LY +T  +   S N   +   KP    +  IL 
Sbjct: 274 VVDNTAADVEIQVHLAPGVSPDITMDALYAFTECEVSISPNACIIIAEKPHFVGVTDIL- 332

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                  +   ++T +LL +       L  L   +    E + I              + 
Sbjct: 333 -------KYNTQQTVHLLQR-ELEIKRLELLEKILYGSLEKIFI-----------ENRIY 373

Query: 420 RSWNASDIKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELN 478
           R     +  + +    D             +++    A+ E+R+ R++          + 
Sbjct: 374 RDIEECETFEAVIRTIDKGLEPFKPQFYREITDDDIVALTEIRIKRISKYDSFKADELMR 433

Query: 479 SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP--RRTRIVEGLL 525
               ++ E      + + +     +    +  +      RRT I     
Sbjct: 434 KWEADLAETE---DNLAHITRFAIEYFRDLLKKYGKNRGRRTEIRAFNQ 479


>gi|88802817|ref|ZP_01118344.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
 gi|88781675|gb|EAR12853.1| DNA topoisomerase IV subunit A [Polaribacter irgensii 23-P]
          Length = 917

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 153/812 (18%), Positives = 296/812 (36%), Gaps = 111/812 (13%)

Query: 3   EHIISSDEEEEKGITSVS-ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           E    ++ ++ + + +++ IT   +  +L YA  VIL RA+P L DGLKPV RRI+  M 
Sbjct: 18  EEQSDTENDQTETVETITKITGMYKEWFLDYASYVILERAVPSLEDGLKPVQRRIMHSMK 77

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
            +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++ 
Sbjct: 78  DLD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KELLIDMQGNWGNIL 129

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL K A  ++      T  ++ +YDG  +EP+ L  ++P +L  G  
Sbjct: 130 TGDRAAASRYIEARLSKFALDVV--FNSKTTAWKQSYDGRRKEPIDLPVKFPLLLAQGAE 187

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++T +  HN  E++D  +  +      +         PDF TG +          
Sbjct: 188 GIAVGLSTKVLPHNFIELIDASMKYLKGRSFKIL--------PDFITGGIADFTN----- 234

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     +R  + I     D++ +V+ EIP+      +++ I +    ++        
Sbjct: 235 YNDGVRGGKVRVRARI--AQLDKKTLVINEIPFGTTTTTLIDSIIKA--NEKGKIKIKKI 290

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           +++      +++ L    S D  ++ LY +TS ++  S     +   KP    +  +LK 
Sbjct: 291 EDNTAAEVEILVHLPPNVSPDKTIDALYAFTSCENSISPLSCTIEDNKPVFVGVSEMLKH 350

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
                 +++ +  +  LN+  ++ H      I +   + + R I      E         
Sbjct: 351 STDLTVDLLKKELEIQLNELEEQWHFSSLERIFIE--NRIYRDIEEEETWE--------- 399

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                    +++ I+             + E     + E+R+ +++    D  +  +  L
Sbjct: 400 --------GVLNAINLGLQPHIKHLKRAIVEEDIARLTEIRIKKISKFDIDKAKQFIEGL 451

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDM 538
             +I     + +  + L+         +KD       R+T +                  
Sbjct: 452 EAKIA---IVTAHLANLIEFAIAYFKRLKDTYGAGKERKTEVRTFDDI------------ 496

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                      +V ++  +      +G  G  ++ ++FVTD    S    ++ F   G +
Sbjct: 497 --------IASKVAMNNVKLYVNREEGFIGTTLKKDEFVTD---CSDIDDIIIFRKDGKM 545

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
              K            GK +               +     +         F  + G   
Sbjct: 546 MVTKA-----AGKTFVGKDI---------------IYVAVFKKQDKRTVYNFMYRDGAKG 585

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
            + +  F   + +      L +  +   V               G       + +     
Sbjct: 586 ASYMKRFNVTSVTRDKEYDLTNGSKGSLV-------HYFTANLNG------EAEVVTINL 632

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           R + G+    L        +A+   A          +K +  +   +S          + 
Sbjct: 633 RAAAGLN--KLKWDIDFTDLALKGRAVRGNTITKYAIKIVDFKSEGVSTLKPRKIWFDDT 690

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                     +       E  +L +++ G  K
Sbjct: 691 VQRLNVDGRGKLLGEFRAEDKLLIITQSGKAK 722


>gi|3046558|gb|AAC13492.1| DNA gyrase subunit A [Cronobacter sakazakii]
          Length = 150

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/150 (59%), Positives = 120/150 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           DL K+TVDF  NYDG+ + P V+  + PN+
Sbjct: 121 DLEKETVDFVDNYDGTEKIPDVMPTKIPNL 150


>gi|294992611|gb|ADF57432.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  325 bits (834), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/167 (53%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|294992589|gb|ADF57421.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/167 (53%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVNG  GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISAGYATDIPPHNL 167


>gi|117654315|gb|ABK55588.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/219 (61%), Positives = 171/219 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEXTSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           EIPYQVNKA ++EKIA+LV +K+I  I DLRDES+R G 
Sbjct: 181 EIPYQVNKAXLIEKIADLVPDKKIDGITDLRDESNRNGM 219


>gi|257362157|gb|ACV53178.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 98/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDYACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|149370480|ref|ZP_01890169.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
 gi|149356031|gb|EDM44588.1| DNA topoisomerase IV subunit A [unidentified eubacterium SCB49]
          Length = 896

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 159/811 (19%), Positives = 293/811 (36%), Gaps = 112/811 (13%)

Query: 3   EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++      EE + IT V  T   +  +L YA  VIL RA+P + DG KPV RRI+  M  
Sbjct: 23  DNDEMDHVEETETITRV--TGMYREWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKD 80

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-D 121
           +    + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  
Sbjct: 81  LD---DGRYNKVANIVGHTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILT 132

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           GD  AA RY E R+ K    ++         ++ +YDG  +EP+ L   +P +L  G  G
Sbjct: 133 GDRAAASRYIEARISKFGLDVVY--NPKITKWQASYDGRRKEPINLPVMFPLLLAQGAEG 190

Query: 182 IAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           IAVG++T +  HN  E++D  V  +      L         PDFPTG ++         Y
Sbjct: 191 IAVGLSTKVLPHNFLELIDASVKYLQGKRFTL--------FPDFPTGGMVD-----VTDY 237

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
             G     I+  + I     D+  +V+ EIP+  N  ++++ I  L    +        +
Sbjct: 238 NDGLRGGKIKSRARI--LQHDKNTLVIREIPFGTNTGSLIDSI--LKANDKGKIKIKKIE 293

Query: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAF 361
           ++      ++I +  G S D  ++ LY +T+ ++  S     +   KP    +  +LK  
Sbjct: 294 DNTAADVEILIHIAAGLSPDKTIDALYAFTNCETSISPLACVIEDNKPLFVGVSEMLKRS 353

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
                 ++    +  LN+  ++ H      I +   + + R I      E          
Sbjct: 354 TDRTVFLLKSELEIQLNEFEEQWHYASLERIFIE--NRIYRDIEEEETWE---------- 401

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
                   +I  ID       S     ++E     + E+R+ R++    D  + ++++L 
Sbjct: 402 -------GVITAIDKGLKPHTSHLKRAVTEEDIVRLTEIRIKRISKFDIDKAQQKIDALE 454

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMV 539
             I E    L     L+         ++ +      R++ I                   
Sbjct: 455 DSIAEVKHHL---ENLITYAINYFTRLRKDYGEGKERKSEIKVFDD-------------- 497

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
             ++    ++   L V R +   G                +   S    ++ F+  G + 
Sbjct: 498 -IIASKVVIRNTKLYVNREEGFIGTSL--------KRDEYVTDCSDIDDIIAFTKDGKMM 548

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV      S    GK +I++    + ++ T      +D                 ++R
Sbjct: 549 VTKVD-----SKTFIGKDIIHVAVFKKKDKRTIYNMIYKDGPKGAT----------YIKR 593

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             ++   +       A               T+ + +   T          + +     R
Sbjct: 594 FAVTSVTRDREYDMTA--------------GTKGSKVYYFTANPNG----EAELVTVLLR 635

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            +  V+   L        + +              +K +  + + +S          +  
Sbjct: 636 QTGSVK--KLKWDLDFSDILVKGRGSKGNIVTKYPLKRIELKEKGLSTLKPRKIWFDDTV 693

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGK 810
                            E  +L V ++G  K
Sbjct: 694 QRLNLDGRGELLGEFKSEDRLLIVYQRGVVK 724


>gi|13272209|gb|AAK15778.1| DNA gyrase subunit A [Aeromonas sobria]
          Length = 147

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 89/147 (60%), Positives = 118/147 (80%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + PN+LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPNLLVNGSSG 147


>gi|117654183|gb|ABK55522.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD + R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDLNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEREPIVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSSGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|313192113|emb|CBX19916.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 154/280 (55%), Positives = 213/280 (76%), Gaps = 1/280 (0%)

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAV
Sbjct: 1   AAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAV 60

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           GMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG
Sbjct: 61  GMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETG 120

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
           +G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESD
Sbjct: 121 KGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESD 179

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           R+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F
Sbjct: 180 REGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINF 239

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
           +++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ II
Sbjct: 240 QKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINII 279


>gi|119952841|ref|YP_945050.1| DNA topoisomerase IV subunit A [Borrelia turicatae 91E135]
 gi|119861612|gb|AAX17380.1| topoisomerase IV subunit A [Borrelia turicatae 91E135]
          Length = 628

 Score =  325 bits (832), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 156/708 (22%), Positives = 276/708 (38%), Gaps = 93/708 (13%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +LV G  GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLY--SKEITSYEPSYDGRNDEPLIFPAKIPVILVQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     +L         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILSAVKSELLGESYELY--------PDFPTGGIVD-----VNEYADGNGKVLVRARIEPT 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               D + I++ E+P+     +++  I   +R+  I   +   ++   +   + + L RG
Sbjct: 218 D---DNKAILIKELPFGETTESLIASIERAIRKNYIKVSS--INDFTTENVEIELTLPRG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++++  + +  L
Sbjct: 273 VYASEVIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIKFHAEHLQKIL--KMELEL 330

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
            + +    +       +    ++ +I+            ++       D     D++ D 
Sbjct: 331 ERNKILEKIFSKTLEQMFIEKKIYKILETISKESDVVNIVLSEILKYKDSFLYRDIVLDD 390

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                              +L++ + +++    D    ++ +L  E+K     + S    
Sbjct: 391 ----------------IENLLKIPIRKISMFDIDKNNKDIRNLSKELKSVESNIKSIRGF 434

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                  LL    ++   RR   +  +     ++   +   V      G+V    +    
Sbjct: 435 SINFIDTLLEKYSKVY--RRKTEISLIKSKNVKEIATKNMKVYLNLKAGFVGTSLID--- 489

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
                                 +   S +  +L F      Y  K             K 
Sbjct: 490 -------------------GEFIGNASYYDKILIFKKN--SYVLKNIE----DKTFIDKN 524

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
            +N+L  +       +        + N  Y         V+R K+  FI           
Sbjct: 525 NVNVLVYDINNSKDQVFSIIYLNKADNFYY---------VKRFKIDKFITDKIYEF---- 571

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
           L+  DE +      +   +  +T         I    +   R SVG R
Sbjct: 572 LNDGDEFIDFALNPE--FVEFSTSKDIVRMISIDDF-MIKSRISVGKR 616


>gi|117654289|gb|ABK55575.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 223

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 134/223 (60%), Positives = 178/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGXGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           E+PYQVN A ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 ELPYQVNNAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 223


>gi|146300230|ref|YP_001194821.1| DNA topoisomerase IV subunit A [Flavobacterium johnsoniae UW101]
 gi|146154648|gb|ABQ05502.1| DNA topoisomerase (ATP-hydrolyzing) [Flavobacterium johnsoniae
           UW101]
          Length = 906

 Score =  324 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 118/511 (23%), Positives = 223/511 (43%), Gaps = 51/511 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + EEE + +    +T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 49  ENQEEEGEDVI-TKVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    + LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----KDLLIDCQGNWGNILTGDGA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        ++  +YDG   EP+ L  ++P +L  G  GIAVG
Sbjct: 160 AAPRYIEARLSKFALEVLY--SPKITEWGLSYDGRKAEPINLPVKFPMLLAQGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++T +  HN  E++D  + ++      L         PDF T  +        + Y  G 
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFTLY--------PDFMTQGIAD-----VSNYNDGM 264

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I  +  D+  +V+T+IP+  N +++++ I  L    +        +++  
Sbjct: 265 RGGRVRVRAKI--SQLDKNTLVITQIPFSTNTSSLIDSI--LKANDKGKIKIKKIEDNTA 320

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               ++I L  G S D  ++ L+ +T+ ++  +     +   KP    +  +LK      
Sbjct: 321 ADVEILIHLFPGVSPDKTIDALFAFTACETSVAPLGCVIEDNKPLFIGVSQMLKISTHRT 380

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +++ +  +  L + +++ H               +  I         R E+        
Sbjct: 381 VDLLRQELEIQLEELKNKWHFS------------TLEKIF-------IREEMYIDFKLYG 421

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D + L   + D            +++   + + ++ + R+T    D   + +  L     
Sbjct: 422 DRESLYKYLYDRFEPFKKSFVREINDDDLQRLTQIPMIRITRFDSDKADDLIAKLED--- 478

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           E  ++  +   L          +K++    R
Sbjct: 479 EMKEVEHNLEHLTDFAIAYFTKLKEKYGKGR 509


>gi|213051497|ref|ZP_03344375.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 520

 Score =  324 bits (831), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 195/476 (40%), Positives = 286/476 (60%), Gaps = 12/476 (2%)

Query: 299 LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
           LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+
Sbjct: 2   LRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDII 61

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            AFV  R EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+
Sbjct: 62  SAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALI 121

Query: 419 QRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGR 470
            R W+  ++  +++   D +             DG  YL+E Q +AIL+LRL +LTGL  
Sbjct: 122 SRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEH 181

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + + +E   L  +I E L IL S  RL+ +I++E+  ++D+    RRT I     D+  E
Sbjct: 182 EKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIE 241

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L
Sbjct: 242 DLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTIL 301

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            FSS G +Y  KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  
Sbjct: 302 CFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFM 358

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF  
Sbjct: 359 ATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKE 418

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            A+R   GR + GVRGI LA  D+V+S+ I     A  D     ++      R+  
Sbjct: 419 DAVRAM-GRTATGVRGIKLAGDDKVVSLIIPRGEGAIPDRNAKRLREAYRSGRVPD 473



 Score =  101 bits (251), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 13/236 (5%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    R+   A   D   E    +  +QE+ ++  +  G     P++       R  
Sbjct: 220 RDQFGDERRTEITANSADINIE----DLISQEDVVVTLSHQGYVKYQPLTDYEA-QRRGG 274

Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G     + + D +  + +    D           Y   +        G           
Sbjct: 275 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP 334

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 I+         +   +   +  G  K+T+  +F     +  GI A ++   N+ 
Sbjct: 335 LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNL---NDG 389

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L+ V   + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 390 DELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 445



 Score = 80.2 bits (196), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       +    +  + +  N ++   ++L  +E  +
Sbjct: 191 LLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVV 250

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 251 VTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 307

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            L  + V ++  ASR  +G   V +     +ER+ ++  +RE E 
Sbjct: 308 RLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEE 352



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 71/200 (35%), Gaps = 8/200 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   L+D+    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 250 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 309

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
               +  +   A R + G   V  + L   +++ +  I+   + +    +         +
Sbjct: 310 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITA--ILPVREYEEGVNVFMATASGTVK 366

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +    +     S    +    +  E    +L      ++  S  G   R      R   R
Sbjct: 367 KTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGR 426

Query: 823 SGKGIRATDVSKINEIGALV 842
           +  G+R   ++  +++ +L+
Sbjct: 427 TATGVRGIKLAGDDKVVSLI 446


>gi|3046556|gb|AAC13491.1| DNA gyrase subunit A [Citrobacter freundii]
          Length = 150

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 89/150 (59%), Positives = 120/150 (80%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH L+ 
Sbjct: 61  YHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           DL K+TVDF  NYDG+ ++P V+  + PN+
Sbjct: 121 DLEKETVDFVDNYDGTEKKPDVMPTKIPNL 150


>gi|294992601|gb|ADF57427.1| topoisomerase IV subunit C [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 168

 Score =  324 bits (830), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 88/167 (52%), Positives = 119/167 (71%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPH
Sbjct: 1   FGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K
Sbjct: 61  GDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEK 120

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
           +TV F  N+D + +EP VL A +PN+LVN   GI+ G AT+IP HNL
Sbjct: 121 NTVPFAWNFDDTEKEPTVLPAAFPNLLVNESSGISAGYATDIPPHNL 167


>gi|126661927|ref|ZP_01732926.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
 gi|126625306|gb|EAZ95995.1| DNA topoisomerase IV subunit A [Flavobacteria bacterium BAL38]
          Length = 902

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 161/805 (20%), Positives = 302/805 (37%), Gaps = 108/805 (13%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  M ++   
Sbjct: 42  ENNENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSMKELD-- 97

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A I G  M +YHPHG+A+I DA+ ++ Q    + L+I+ QGN+G++  GD  
Sbjct: 98  -DGRYNKVANIVGHTM-QYHPHGDASIGDAMVQIGQ----KDLIIDMQGNWGNILTGDSA 151

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E R+ K  H +L        ++  +YDG   EP+ L  ++P +L  G  GIAVG
Sbjct: 152 AASRYIEARISKFGHDVLY--SPKITEWGMSYDGRRAEPINLPVKFPLLLAQGAEGIAVG 209

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++T +  HN  E++D  + ++      L         PDFPT  +        + Y  G 
Sbjct: 210 LSTKVLPHNFNELIDSSIKILKGKPFTL--------FPDFPTAGIAD-----VSNYNDGL 256

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +R  + I     D++ +V+T+IP+  N + +++ I  L   ++        +++  
Sbjct: 257 RGGRVRVRAKI--GQLDKQTLVITQIPFSTNTSTLIDSI--LKANEKGKIKIKKIEDNTA 312

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               ++I L  G S D +++ LY +T+ ++  +     +   KP    +  +LK      
Sbjct: 313 AEVEILIHLPAGVSPDKMIDALYAFTACETSVAPLGCVIENNKPLFIGVSDMLKISTNRT 372

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            +++ R  +  L++  ++ H               +  I         R E+       S
Sbjct: 373 VDLLKRELEIQLDELENKWHFS------------TLEKIF-------IREEMYIDFKLYS 413

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           D + L   + D            +++   + + ++ + R+T    D   + +  L     
Sbjct: 414 DRESLYKYMYDRFEPFLKSFVREINDDDLQKLTQIPMIRITRFDSDKADDAIAKLEA--- 470

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
           E   +      ++         +KD+     R R  E       E               
Sbjct: 471 EMEQVKYHLDHIIDYTIDFFQKLKDKYG-KGRERQTELRSFDNIEAT------------- 516

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
               +V L   +      +G  G  ++ +++V D    S    V+ F   G +   KV  
Sbjct: 517 ----KVVLRNTKLYVNREEGFFGTGLKKDEYVAD---CSDIDDVIVFLRDGKMMVAKVDD 569

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                 +  GK +I+I   ++ ++ T       D  + +            ++R  +S  
Sbjct: 570 -----KKFVGKDIIHIAVFDKNDKRTIYNMMYRDGKNGST----------FIKRFNVSGV 614

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +              D+   +      + +   +          + +     R    V+
Sbjct: 615 TR--------------DKFYDLTQEKPGSMVSYFSANPNG----EAEVVTILLRQVGSVK 656

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
              L        +AI   A          +K +  + + IS          +        
Sbjct: 657 --KLKWDVDFSDIAIKGRASRGNTVTKYPIKKIELKEKGISTLRPRKVWFDDTVQRLNVD 714

Query: 786 SEERCQELKLKEQFILTVSEKGFGK 810
                         +L V++ G  K
Sbjct: 715 GRGELLGEFRPNDRLLIVNQSGKLK 739


>gi|70940757|ref|XP_740752.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518684|emb|CAH79846.1| hypothetical protein PC000560.03.0 [Plasmodium chabaudi chabaudi]
          Length = 370

 Score =  324 bits (829), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 126/337 (37%), Positives = 194/337 (57%), Gaps = 35/337 (10%)

Query: 2   TEHIISSD-EEEEKGIT-----SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
           T+  + +  E + K +       V I + +  S+L+YA  +IL R + D RDGLK V RR
Sbjct: 35  TDETVENFFESQTKNLIKGEYYDVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRR 94

Query: 56  ILFGMMQMGVEWNKK-YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           I++ M ++    +KK Y KCARI GEV+GKYHPHG+ ++YDAL R+AQ      +LI G 
Sbjct: 95  IIWSMYEINKGSDKKSYKKCARIVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNVLINGY 154

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           GNFGSV+    AA RYTE R+    +  LLD++  + VD+  N+DG+ +EP VLC++ P 
Sbjct: 155 GNFGSVEY-NAAAMRYTEARISDFCYDVLLDEINDENVDYIKNFDGNEKEPKVLCSKIPL 213

Query: 174 VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
           +L+NG  GIAV + TNIP+HNL +V++  ++ + N  I  D L  II+GPDF TG +I+ 
Sbjct: 214 LLINGCSGIAVSILTNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIIT 273

Query: 234 RTG-IKNAYATGRGSIVIRGVSHIEKTSGD----------------------REQIVVTE 270
           +   ++N Y TG+GSI+IR     E    +                       +++++  
Sbjct: 274 KKDTLRNIYNTGKGSIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKN 333

Query: 271 IPYQVNKAAMLEKIAELVREKRIVD---IADLRDESD 304
           +P  V    ++E I  ++ EK+      ++ +RDES+
Sbjct: 334 LPPNVKPNELIENIVTVLNEKKNEHDNILSKIRDESE 370


>gi|313192101|emb|CBX19910.1| gyrase A [Clostridium perfringens]
          Length = 279

 Score =  324 bits (829), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 153/280 (54%), Positives = 212/280 (75%), Gaps = 1/280 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 239

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           F+++V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ I
Sbjct: 240 FQKDVITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 279


>gi|281356735|ref|ZP_06243226.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
 gi|281316862|gb|EFB00885.1| DNA topoisomerase (ATP-hydrolyzing) [Victivallis vadensis ATCC
           BAA-548]
          Length = 877

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 137/514 (26%), Positives = 216/514 (42%), Gaps = 55/514 (10%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M  ++L YA  VI  RAIPD+ DGLKPV RR+L+ + Q    ++ +  K A + G  M  
Sbjct: 52  MDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQ---VYDGRTHKVANVVGNTM-H 107

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLL 143
           YHPHGNA+I DAL  +A     +   I  QGNFG++  G P AA RY EC L    H +L
Sbjct: 108 YHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLGHEVL 163

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
                D  +F   YDG   EPV L A+ P++L+ G  GIAVGMAT I  HN  E+++  +
Sbjct: 164 --FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELLEAEI 221

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           AV+   + +L         PDF  G ++         Y  G G I +R    I       
Sbjct: 222 AVLRGEEFELY--------PDFQQGGLMD-----VREYNDGNGKITLRAKIEIVGRD--- 265

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
             +++ EIP   +   ++  I +   + +I   +     +D+    + +   RG   +  
Sbjct: 266 --LIIREIPATTSTETLVASIEKAAEKNKIKISSVNDYTTDK--VEIKVVPTRGYDPEKT 321

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           +  LY YT      SVNM  +   +P + ++  +L+       E + R  +  L K  D 
Sbjct: 322 MQGLYMYTDCSVSISVNMTVIRENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQEDL 381

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            H      I     + + + I    + +    E+         +                
Sbjct: 382 FHAKTLAQIFFE--NRIYKKIEECKSEKEEYTEVHAGLAPFRHLLR-------------- 425

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                +++     +L L + R++    +  + EL  +  +++E    L S   L      
Sbjct: 426 ---RDVTDQDIDKLLALPVRRISRFDIEKNQRELAEVLAKMEEIKKNLGS---LKKYAIN 479

Query: 504 ELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVR 535
            L  + D+   D PRRT I         E  +  
Sbjct: 480 YLRKLLDKYGKDFPRRTEIEHFEKIDRREAALNN 513


>gi|257362151|gb|ACV53176.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae]
          Length = 188

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 136/189 (71%), Gaps = 3/189 (1%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + KY K AR  G+V+GK+HPH ++A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHCDSACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            +S R  LI+GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS
Sbjct: 61  PFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESKLSKMAEVLLGELGQGTVDYQPNFDGS 119

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP  L AR P++L+NG  GIAVGMAT+IP HN+ E+ +  V +++NP   L  LM ++
Sbjct: 120 LEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAEASVMLLENPKASLAELMTVV 179

Query: 221 RGPDFPTGA 229
           +GPD+PT A
Sbjct: 180 QGPDYPTEA 188


>gi|13272207|gb|AAK15777.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  323 bits (827), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 117/147 (79%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + P +LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|172073094|gb|ACB71404.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 149

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 92/149 (61%), Positives = 115/149 (77%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNLT 149


>gi|161511947|emb|CAP45393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 156

 Score =  322 bits (825), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 92/149 (61%), Positives = 116/149 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  AQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            + P V+  + PN+LVNG  GIAVGMAT 
Sbjct: 121 EKIPDVMPTKIPNLLVNGSSGIAVGMATK 149


>gi|330953529|gb|EGH53789.1| DNA gyrase subunit A [Pseudomonas syringae Cit 7]
          Length = 645

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 203/604 (33%), Positives = 314/604 (51%), Gaps = 50/604 (8%)

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           EK++  I +LRDESD+ G RVVIEL+RG   +VILN LY  T LQS+F +N+VAL   +P
Sbjct: 1   EKKLEGITELRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINIVALIDGRP 60

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
               L  +L+AFV  R EVV RRT + L KAR+R H+L G A+A++N+D V+ +I+ SP 
Sbjct: 61  RILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKASPT 120

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELR 461
           P  A+  L++  W +S + ++++     S             +G  +LS  Q +AILELR
Sbjct: 121 PAEAKEALIKTPWESSAVVEMVERAGADSCRPENLDPQYGLREGKYFLSPEQAQAILELR 180

Query: 462 LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV 521
           L RLTGL  + +  E   +  +I E + IL+S +RL+ +I++EL  ++ E    RRT I+
Sbjct: 181 LHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRLMEVIREELELIRSEYGDARRTEIL 240

Query: 522 EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLF 581
           +  LD+   D I  E+ VVT+SH GY K  PL+VY+AQRRGGKG+S   ++DED++  L 
Sbjct: 241 DARLDLTLGDLITEEERVVTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLL 300

Query: 582 IVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDES 641
           + ++HT++L FSS G VY  K + +P  S  ARG+ L+N+L L+ GE ITT++P   +  
Sbjct: 301 VANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGEYITTMLPVDLEAM 360

Query: 642 S------------------------------------WNNLYVVFATKHGNVRRNKLSDF 665
                                                    ++  +T +G V++  L  F
Sbjct: 361 RKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAF 420

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
            +   SG IA++LD  D ++S      E +I+L +  G+  RF  S +R   GR + GVR
Sbjct: 421 SRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESDVRAM-GRTARGVR 479

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G+ L +G ++ISM I                  +A              +   S+     
Sbjct: 480 GMRLPEGQKLISMLIPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGR 539

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                Q L  +E  I+ +S++G   RT   +     R+ +G+    ++   +   LV + 
Sbjct: 540 LVGAVQVLDGEE--IMLISDQGTLVRTRVGEVSSLGRNPQGVTLIKLASDEK---LVGLE 594

Query: 846 PVND 849
            V +
Sbjct: 595 RVQE 598



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 15/275 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 382 SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 439

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 440 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 493

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 494 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 550

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN  GV  I LA  ++++ +  V        E +  
Sbjct: 551 EIMLISDQGTLVRTRVGEVSSL-GRNPQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 609

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
            + +       +    +       +    +  E +
Sbjct: 610 EEVIDGVIVDGAEAEVDDAGEDLQADAASDEDEPQ 644


>gi|311746903|ref|ZP_07720688.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
 gi|126578592|gb|EAZ82756.1| DNA topoisomerase 4 subunit A [Algoriphagus sp. PR1]
          Length = 872

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 125/526 (23%), Positives = 226/526 (42%), Gaps = 56/526 (10%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E        ++    +V ++   ++ +L YA  VIL RA+P + DGLKPV RRI+  M
Sbjct: 1   MSEENDLPKNGDDNLHDTVPVSGMYKDWFLDYASYVILERAVPAIEDGLKPVQRRIMHAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + ++ K A I G+ M +YHPHG+A+I DA+  + Q    + LLIE QGN+G +
Sbjct: 61  KEMD---DGRFNKVANIIGQSM-QYHPHGDASIGDAIVNLGQ----KDLLIETQGNWGDI 112

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K A  ++      T +++ +YDG  +EP+ L  ++P +L  G 
Sbjct: 113 RTGDRAAAARYIEARLSKFALEVV--FNPQTTEWQLSYDGRKREPITLPVKFPLLLAQGV 170

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+++G + ++     ++         PDF TG +        +
Sbjct: 171 EGIAVGLSTKILPHNFCELIEGSIEILKGNKTNVL--------PDFLTGGLAD-----FS 217

Query: 240 AYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            Y  G+  G + +R     E +      I++ EIP+     ++++ I  L    +     
Sbjct: 218 EYNGGQRGGKVKVRAKIEEEDSK----TILIKEIPFGTTTDSLIDSI--LKANDKGKIKI 271

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
               ++  +   + + L  G S DV ++ LY +T  +   S N   +   KP    +  I
Sbjct: 272 KKVVDNTAKDVEIAVHLAPGISPDVTIDALYAFTDCEVSISPNACVIIDEKPVFLDVNDI 331

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L         ++ +  +    +  +                   +++  S         +
Sbjct: 332 LTYNTKQTRALLKKELEIRKAELME-------------------KLLFSSLEKIFIENRI 372

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +     +  +++++ ID        D    + E     + E+R+ R++          +
Sbjct: 373 YRDIEECTTWQEVLEAIDKGLDPYKPDFYREIVEEDLVKLTEIRIKRISKFDSFKADELM 432

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIV 521
             L  E+KE      +   L     +   S+  +      R+T I 
Sbjct: 433 KRLQDELKEVNY---NLRHLTDYAIKYYESLLTKYGKGKERKTEIR 475


>gi|313205728|ref|YP_004044905.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|312445044|gb|ADQ81399.1| DNA topoisomerase (ATP-hydrolyzing) [Riemerella anatipestifer DSM
           15868]
 gi|315022876|gb|EFT35900.1| DNA topoisomerase IV subunit A [Riemerella anatipestifer RA-YM]
 gi|325336831|gb|ADZ13105.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Riemerella anatipestifer RA-GD]
          Length = 857

 Score =  322 bits (824), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 162/824 (19%), Positives = 294/824 (35%), Gaps = 134/824 (16%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
           +    ++ + +  VS     ++ +L YA  VIL RAIP + DG KPV RRI+  M ++  
Sbjct: 1   MEEQYQKGETLKKVS--RLYKDWFLDYASYVILDRAIPSIFDGFKPVQRRIMHSMKEL-- 56

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDP 124
             + +Y K A I G  M KYHPHG+A+I DA+ ++ Q    + LLI+ QGN+G+V  GD 
Sbjct: 57  -EDGRYNKVANIVGNTM-KYHPHGDASITDAMVQIGQ----KELLIDTQGNWGNVYTGDS 110

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RY E RL   A  ++      T  +  +YDG   EP+ L  ++P +L  G  GI V
Sbjct: 111 AAAARYIEARLTPFALEVV--FNPKTTHWVKSYDGRNNEPIDLPVKFPLLLAQGVEGIGV 168

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G++T +  HN  E+++  +A +      L         PDF TG ++       + Y  G
Sbjct: 169 GLSTKVMPHNFNELIEASIAYLKGKKFQLY--------PDFMTGGMLD-----VSNYNDG 215

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD 304
                +   +       D+  + +TE+P+    + +++ I +   + +I       + SD
Sbjct: 216 ERGGRL--RARARIIQKDKHTLCITELPFSKTTSDLIDSIIKANEKGKIKIKKIEDNTSD 273

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
           +    + I L    S D +++ LY +T  +   S N   + G KP   ++  ILK     
Sbjct: 274 Q--VEINIHLNNDVSPDKMIDALYAFTDCEISISPNACVIVGDKPMFLSVSEILKRNTDH 331

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
              ++ R  +  L +  D+ H      I +   +E+ + I+   + E     +       
Sbjct: 332 TVSLLKRELEIELGELEDKWHFASLERIFIE--NEIYQEIKGKDSKEAVYEAIN------ 383

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                L   I +    + ++  + L+E        L   R++   RD     + +L  ++
Sbjct: 384 ---LALQPFIKNLMREVVTEDIIRLTE--------LPFMRISRYDRDKALENIAALEGKM 432

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
           +E    L   + L+       L++K +   D  RRT +         +  +  E      
Sbjct: 433 EEVKHHL---AHLVEYAINYFLNIKKKFGKDKERRTELRVFDTIDATKVAVANEK-FYVN 488

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK-- 600
              G++                               +F  S    ++ F   G +    
Sbjct: 489 RAEGFIGTSLRKD----------------------EYVFDCSDIDDIITFRKDGVMQVTK 526

Query: 601 ------EKVWRLPIGSPQARGKALI-NILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
                      +  G  +   K  + N++          +  F     + N  Y + +  
Sbjct: 527 VEPKTFVGKDIIHTGVWKKNDKRTVYNMIYREGKTGPYYMKRFSVTSITRNTEYPLAS-- 584

Query: 654 HGNVRRNKLSDFIQINRSGKIAMK--LDSRDEILSVETCTQENDILLTTKLGQCVRFPIS 711
              V+ +++  F          +   L     I   +     +D+               
Sbjct: 585 --EVKGSEVLYFSANPNGEAEVVTVLLKPNARIRKNKIEIDFSDL--------------- 627

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
                 GRNS G                               +K +  +   +S     
Sbjct: 628 ---AIKGRNSRG------------------------NLVTKYAVKKVDLKEEGVSTLAPR 660

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
                         +          +  ILT++ KG  K  +  
Sbjct: 661 KIWFDETVRRLNADARGTLLGSFKGDDKILTINTKGEAKLMTFD 704


>gi|298373528|ref|ZP_06983517.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298274580|gb|EFI16132.1| DNA topoisomerase 4 subunit A [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 905

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 136/579 (23%), Positives = 244/579 (42%), Gaps = 69/579 (11%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + +   +IL RAIP + DGLKPV RR+L+ M +M    + +Y K A + G  M ++HPHG
Sbjct: 55  MDFGSYIILNRAIPHINDGLKPVQRRVLYSMRRM---EDGRYNKVANVVGHTM-QFHPHG 110

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLGK 148
           +++IY AL  + Q    + +LI+ QGN+G++  GDP AA RY E RL + A   +     
Sbjct: 111 DSSIYGALVGLGQ----KNILIDTQGNWGNILTGDPAAAARYIEARLSRFALDTV--FNP 164

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            T +++P+YDG   EPV L  ++P +L  G  GI  G+ T I  HN  E++D  +  +  
Sbjct: 165 KTTEWKPSYDGRNDEPVALPVKFPLLLAQGSEGIGYGLNTKILPHNFNELIDATILYLQG 224

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            +            PDFPTG +I       + Y  G     +    +I   S D + +++
Sbjct: 225 KE--------FCLYPDFPTGGMID-----VSRYNDGERGGKVMMRVNI-TKSADNKSLII 270

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
             +PY ++ A ++E I +   + +I       D++  +G  +++ L+   S D  ++ LY
Sbjct: 271 NNVPYGLDTAKLIESIIQANEKGKINIKK--IDDNTAEGVEIILHLEAKTSLDKTIDALY 328

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            +T  Q+ +S N   ++  KP   T+  +L+        ++ +           R  +  
Sbjct: 329 AFTDCQTQYSPNCCVIDNNKPVFVTVSEVLRRSADNTVGLLRKELDIE------RHELSE 382

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
            L  A      +   I   P  E A+ E +            +  ID        D    
Sbjct: 383 QLLFASLEKIFIEERIYKDPEFENAKSEDIA-----------LKHIDRRIEPYKKDFVRT 431

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           ++    R +L++R+AR+     D     + ++   I+E    L +   ++    +    +
Sbjct: 432 VTRDDLRKLLDIRMARILKFNTDKAEANIAAIRGAIEEVDYKLDN---IIEHSIKWFEYL 488

Query: 509 KDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
           K     +  R+T I         +     E +                 Y +++ G    
Sbjct: 489 KKTYGKNYQRQTEIRSFENIEATKVVEANEKL-----------------YVSRKEG---F 528

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
            G  ++ E+ +  +   S    V+ F   G     K+  
Sbjct: 529 VGTNLKKEEDIEFVQNCSDIDDVIVFFKDGKYKVVKISE 567


>gi|172073090|gb|ACB71402.1| GyrA [Escherichia coli]
          Length = 149

 Score =  321 bits (823), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 92/149 (61%), Positives = 115/149 (77%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPGVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATNIPTHNLG 196
             + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 121 PTKIPNLLVNGSSGIAVGMATNIPPHNLT 149


>gi|172073092|gb|ACB71403.1| GyrA [Escherichia coli]
          Length = 152

 Score =  321 bits (822), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 93/152 (61%), Positives = 118/152 (77%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR 
Sbjct: 1   LKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            + PN+LVNG  GIAVGMATNIP HNL EV++
Sbjct: 121 TKIPNLLVNGSSGIAVGMATNIPPHNLTEVIN 152


>gi|36988482|gb|AAQ87915.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  320 bits (821), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 87/146 (59%), Positives = 116/146 (79%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYD 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           NYDG+   P V+  + P +LVNG  G
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|117654165|gb|ABK55513.1| DNA gyrase subunit A [Bacillus licheniformis]
          Length = 223

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 177/223 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP+V+ AR+PN+LVNG  GIAVGMATNIP H LGE++DG +AV  N 
Sbjct: 61  TIDYQDNYDGSEREPIVMXARFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSKNX 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           ++ L  LMEII GPDFPT  +I+GR+GI+ AY TGRGSI IR  + IE+TS  ++ I++T
Sbjct: 121 EMTLAELMEIIPGPDFPTAGMIMGRSGIRKAYETGRGSITIRAKAQIEETSXGKQVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
           EIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VI
Sbjct: 181 EIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVI 223


>gi|38327349|gb|AAR17702.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327351|gb|AAR17703.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327407|gb|AAR17731.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327409|gb|AAR17732.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  320 bits (820), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 87/150 (58%), Positives = 119/150 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|1296999|emb|CAA64976.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 99/148 (66%), Positives = 115/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIYDAL RMAQ +S
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + L L++GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|313674754|ref|YP_004052750.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
 gi|312941452|gb|ADR20642.1| DNA topoisomerase (ATP-hydrolyzing) [Marivirga tractuosa DSM 4126]
          Length = 867

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 150/728 (20%), Positives = 274/728 (37%), Gaps = 99/728 (13%)

Query: 11  EEEKGITSVSITDEM-QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E++  + +V     M +N +L YA  VIL RA+P   DG KPV RRI+  M +M    + 
Sbjct: 17  EDKDKLHNVIAVSGMYENWFLDYASYVILERAVPANEDGFKPVQRRIMHAMKEMD---DG 73

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAE 128
           ++ K A I G+ M +YHPHG+A+I D++  M Q    + +LIE QGN+G +  GD  AA 
Sbjct: 74  RFNKVANIIGQTM-QYHPHGDASIGDSIVNMGQ----KDILIETQGNWGDIRTGDSSAAP 128

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RY E RL K A  ++      T +++ +YDG  +EPV L  ++P +L  G  GIAVG++T
Sbjct: 129 RYIEARLSKFALDVV--FNPQTTEWQLSYDGRKKEPVTLPVKFPLLLAQGVEGIAVGLST 186

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  HN  E++  C+ V+ N  I++         PDFPTG +        + Y  G    
Sbjct: 187 KILPHNFCELIKACIDVLKNKKIEIY--------PDFPTGGMAD-----FSEYNQGLRGG 233

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IR  + IE+       +++  IP+      ++E I +     +         ++  +  
Sbjct: 234 KIRVRAKIEEGEK--RTLLIKNIPFGTTTTGLIESIIKA--NDKGKIKVKKVVDNTAKDV 289

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + ++L  G S D+ ++ LY +T  +   S N   +   KP    +  ILK  V     +
Sbjct: 290 EIEVQLAAGQSPDITIDALYAFTDCEISISPNACVIIEDKPIFLPVNEILKKNVEDTLGL 349

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + R  +                        E++  I FS   +      + R+    +  
Sbjct: 350 LERELEIRR--------------------GELMEKILFSSLEKIFIENRIYRNIEECETW 389

Query: 429 DL-IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           +  ++ ID             +++     + E+++ R++   +      +  L  E+ + 
Sbjct: 390 EAVLETIDKGLEPFKPQFYREITQDDIIRLTEIKIKRISKFDKFKADELMRKLEDELAQV 449

Query: 488 LDILSSRSRLLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
              L +   L          + ++      R+T I               + + V     
Sbjct: 450 EHHLKN---LTEYAIDYYKGLLEKYGKGKERKTEIKSFDNIQAHTVAANNQKLFV----- 501

Query: 546 GYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                         R+ G    G+          +   S    V+ F   G     ++  
Sbjct: 502 -------------NRQEGFIGYGMKK-----DEFVTDCSDLDDVIAFKRDGTYKVVRIEE 543

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                   +     +I+ ++   +        ++   +N  Y+   T    V+R ++   
Sbjct: 544 --------KVFVGKDIIHVDIFRK-------NDERRVYNAAYLDGKTGRTMVKRFQVLSV 588

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG-----QCVRFPISAIRVFAGRN 720
            +            S+   L      +   I +          +   F  + +    GR 
Sbjct: 589 TRDREYDLTKGAKGSKVSYLEARPNGESEVINVKLSNSCRARVKVFDFDFAEL-EIKGRG 647

Query: 721 SVGVRGIS 728
           + G     
Sbjct: 648 AGGNILTK 655


>gi|327179194|gb|AEA30140.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 91/147 (61%), Positives = 113/147 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SL
Sbjct: 4   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSL 63

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 64  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 123

Query: 167 LCARYPNVLVNGGGGIAVGMATNIPTH 193
           +  + PN+LVNG  GIAVGMATNIP H
Sbjct: 124 MPTKIPNLLVNGSSGIAVGMATNIPPH 150


>gi|325969897|ref|YP_004246088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
 gi|324025135|gb|ADY11894.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta sp. Buddy]
          Length = 659

 Score =  320 bits (819), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 147/653 (22%), Positives = 253/653 (38%), Gaps = 49/653 (7%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               + ++L YA  VI  RAIPDL DG KPV RRI+  + +M    + K+ K A + G  
Sbjct: 5   HSIFKRNFLEYASYVIKERAIPDLGDGFKPVQRRIIHTLFEMD---DGKFHKVANVVGWA 61

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYTECRLQKAAH 140
           M +YHPHG+++IY+AL  +A       L IE QGNFG S+ GD  AA RY ECRL   A 
Sbjct: 62  M-RYHPHGDSSIYEALVNLA----NCDLFIERQGNFGNSLTGDSAAAARYIECRLLPFAK 116

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L     +  +F  +YDG  QEPVV  A+ P VL+ G  GIAVGM+T I  HN  EV+D
Sbjct: 117 KVLY--NPELTEFVDSYDGRNQEPVVFPAKIPVVLIQGVSGIAVGMSTYILPHNPLEVLD 174

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A +      L         PDF  G ++         Y  GRGS+ +R   +     
Sbjct: 175 AMAASLKGESYQLY--------PDFLGGGIVD-----VEDYRDGRGSVSVRAKLNTTDPK 221

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
               +I++ E+PY     AM+  + E  ++ ++  I+ + D +  +   + I L R   A
Sbjct: 222 ----RIIIEELPYGTTSEAMIRSVEEAAKKGKLK-ISSINDYTAEK-VNIEINLARNTYA 275

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             I++ LY YT  ++  S+N + +    P    +  IL         V+    +      
Sbjct: 276 QEIVDALYAYTDCETKLSINPLVIRDNVPTIMGVHEILDWHAQHLVVVLKAELELEKGHL 335

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            D+ H      I +   + + + I    + E   + ++       + +    ++ +    
Sbjct: 336 LDKLHARTLERIFIE--ERIYKRIEQKKSAEEVNKAVITGFKPFEE-QLFRPVVLEDVER 392

Query: 441 IGSDGTMYLSEVQTRAILE--LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           +       +S        E   ++          + N +      I E   +L  +    
Sbjct: 393 LLKIPIRRISLFDIEKNREEIDQINDTVAEIERKLANLIGYALSYIAELKTMLGIKEHQR 452

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLD---------MEDEDCIVREDMVVTVSHLGYVK 549
               +    +  +    R   +     +               +   D V+ +   G  +
Sbjct: 453 KTTIKTFELIDVKEVAERNLAVKYDPANGYLGYGVKTGNILLEVSTFDRVLIIRKDGTYQ 512

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL--- 606
            +         +G          +   +    I    T    F     +   ++ ++   
Sbjct: 513 VIDAPEKEFVGKGLLYCGYAEKTELANLVFSVIYQEKTYKYLFLKRCQIVSYQLKKVYPL 572

Query: 607 -PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
            P G+ +    +      L    +    +   E++  +++ Y+V   K   VR
Sbjct: 573 LPEGNFKLVKLSTYANAELTITYKPKAGLRILEEKFYFSD-YLVKNVKANGVR 624


>gi|36988477|gb|AAQ87914.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 147

 Score =  320 bits (819), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 116/147 (78%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y
Sbjct: 1   SVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ 
Sbjct: 61  DTIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWV 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
           PNYDG+   P V+  + P +LVNG  G
Sbjct: 121 PNYDGTEMIPAVMPTKVPTLLVNGSSG 147


>gi|228470872|ref|ZP_04055717.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
 gi|228307269|gb|EEK16283.1| DNA gyrase subunit A [Porphyromonas uenonis 60-3]
          Length = 872

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 163/802 (20%), Positives = 289/802 (36%), Gaps = 111/802 (13%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
             +EE E  +   ++    ++ +L YA  VIL RA+P + DGLKPV RR+L+ M    + 
Sbjct: 36  PKEEEVEGRLH--TLGGMYRHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMH---LM 90

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            N    K A+I G  M  YHPHG+A+I DAL ++ Q       LI+ QGN+G++  GD  
Sbjct: 91  ENGTLHKVAKIVGATMA-YHPHGDASINDALVQLGQK---GY-LIDTQGNWGNILTGDEA 145

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E +L   A  +L    K T  +  +YDG  +EPV L AR+P +L  G  GIAVG
Sbjct: 146 AAGRYIEAKLSNFALEILFG-DKIT-PWMKSYDGKSREPVYLPARFPLLLAQGAEGIAVG 203

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           ++  I  HN  E+++   A +      L         PDFPTG +I       + Y  G+
Sbjct: 204 LSCKILPHNPKELIEAACAHLRGEPFTLY--------PDFPTGGIID-----VDRYNDGK 250

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               ++  + IE    +   + V ++P+    + +++ I +   +K ++ I  + D +  
Sbjct: 251 RGGQVKSRARIE--RIEDRVLSVRDLPFGKTTSTLIDSILK-ANDKGLIKIKRIDDMTAE 307

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               + I L  G SAD  ++ LY +T  +   S N   +   KP    +  +L+  V   
Sbjct: 308 TA-DIRIYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKPRFLGVSDLLRHSVEHT 366

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             ++       L     +   +      +     + ++         A  +   +     
Sbjct: 367 RGLLEE--DLRLQLHDRQEEYMGASLERLFIEHRIYKL--------PAFEDAPDQQTALD 416

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I+  ++ I      +G      +++     +LE+++AR+     +     +  L     
Sbjct: 417 VIRKALEPI------VGDSLLRPITDDDLARLLEIKMARILKFNLEKNEQLILRLTE--- 467

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           E   I      +         S+ +E      RRT+I         E   V E+ +    
Sbjct: 468 EMAQIQHHLDHITDYAIHYYSSLLEEYGAGWERRTQIGHFG---SIEATKVVEENLKL-- 522

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
              Y+ R         + G                 +   S    ++ F   G  Y    
Sbjct: 523 ---YIDRKMGFAGTGIKGG---------------EYVCDCSEIDDMIVFFRDG-TYLITK 563

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
                   + R   +   +  ++                +N +Y+   TK   ++R  +S
Sbjct: 564 IEEKKFLGKERVLHINKYVRGDKRT-------------IYNAIYLDGKTKTSFIKRFHVS 610

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTK--LGQCVRFPISAIRVFAGRNS 721
               +             D    +   T  + +L  +    G+     I  +R    R  
Sbjct: 611 --ASVR------------DREYDLTMGTPGSKVLYFSANPNGEAESVTIKLLRGGTSRR- 655

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
                I     D    +AI              ++ +S + +  S           D + 
Sbjct: 656 -----ILFFNKDF-ADIAIKGRTAKGNIVTRAPIERISLKEQGGSTLGGRKVWFDPDVNR 709

Query: 782 EGNISEERCQELKLKEQFILTV 803
                +            IL +
Sbjct: 710 INYNDQGNYLGEFESSDRILVI 731


>gi|161511945|emb|CAP45392.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 90/145 (62%), Positives = 114/145 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 67

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 165 VVLCARYPNVLVNGGGGIAVGMATN 189
            V+  + PN+LVNG  GIAVGMATN
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATN 152


>gi|117654329|gb|ABK55595.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 218

 Score =  319 bits (818), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 127/218 (58%), Positives = 168/218 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVP 180

Query: 270 EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           E+PYQVNKA ++ KIA+LVR+K+   I D RDESD  G
Sbjct: 181 ELPYQVNKARLIXKIADLVRDKKXEGITDXRDESDXNG 218


>gi|312130258|ref|YP_003997598.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
 gi|311906804|gb|ADQ17245.1| DNA topoisomerase (ATP-hydrolyzing) [Leadbetterella byssophila DSM
           17132]
          Length = 868

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 134/531 (25%), Positives = 226/531 (42%), Gaps = 64/531 (12%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+E       ++E       + D  +  +L YA  VIL RA+P + DGLKPV RR L  +
Sbjct: 1   MSEENYDPAPQKEL------LDDMFEKYFLEYASYVILERAVPAIEDGLKPVQRRFLHAL 54

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            +M    + ++ K A + G  M +YHPHG+A+I DA+  + Q    + LL++ QGN+G V
Sbjct: 55  KEMD---DGRFNKVANVIGSTM-QYHPHGDASIGDAIVNIGQ----KELLLDIQGNWGDV 106

Query: 121 -DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
             GD  AA RY E RL K  H +L    +DT +++ +YDG  +EPV L A++P VL  G 
Sbjct: 107 RTGDSAAAPRYIEVRLSKFGHEVL--FNEDTTEWQMSYDGRKREPVTLPAKFPLVLEMGA 164

Query: 180 GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
            GIAVG++T I  HN  E+ +  +  + N           +  PDF TG +I       +
Sbjct: 165 EGIAVGLSTKILPHNFIELCEASIKYLKNE--------PFVLYPDFLTGGLID-----VS 211

Query: 240 AYATGR--GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            Y  G   G + +R              + +TEIP+     +++E I +     +I    
Sbjct: 212 NYNDGARGGKVKMRAKISEVDKK----TLKITEIPFSTTTGSLIESIIKANDSGKIKIKK 267

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              +++  +   ++I L    S D+ ++ LY +T+ +   S N V +   KP    +  I
Sbjct: 268 --VEDNTAKNVEIIIHLAPNTSTDITIDALYAFTNCEVSVSPNAVVIVDQKPHFLGVSDI 325

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           LK        ++ R  +                        E++  I +S   +      
Sbjct: 326 LKNSTDQTLHLLRRELEIR--------------------KGELLEKILYSSLEKIFIENR 365

Query: 418 MQRSWNASDIKD-LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           + R     +  + +I+ ID        D    +       + E+R+ R++          
Sbjct: 366 IYRDIEECETFESVIETIDKGLEPYKKDFYREIGREDIIRLTEIRIKRISKYDSFKADEL 425

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLL 525
           +     E+ E  D L++   ++         +  +      RRT IV+   
Sbjct: 426 MRKQQEELVEVNDHLNN---MVRYTINFFKELIRKYGKGRERRTEIVQFGE 473


>gi|313887294|ref|ZP_07820985.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923213|gb|EFR34031.1| DNA gyrase/topoisomerase IV, A subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332176347|gb|AEE12037.1| DNA topoisomerase (ATP-hydrolyzing) [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 875

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 168/840 (20%), Positives = 317/840 (37%), Gaps = 109/840 (12%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
           ++    + EE+E      ++    ++ +L YA  VIL RA+P + DGLKPV RR+L+ M 
Sbjct: 32  SDEGYVAPEEDEGEGHLHTLGGMYRHWFLDYASYVILERAVPHIEDGLKPVQRRVLYTMH 91

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV- 120
              +  N    K A+I G  M  YHPHG+A+I DAL ++ Q       LI+ QGN+G++ 
Sbjct: 92  ---LMENGTLHKVAKIVGATMA-YHPHGDASINDALVQLGQK---GY-LIDTQGNWGNIL 143

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E +L   A  +L    K T  +  +YDG  +EPV L AR+P +L  G  
Sbjct: 144 TGDEAAAGRYIEAKLSNFALEILFG-DKIT-PWMKSYDGKSREPVYLPARFPLLLAQGAE 201

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++  I  HN  E+++   A +      L         PDFPTG +I       + 
Sbjct: 202 GIAVGLSCKILPHNPKELIEAACAYLRGEPFTLY--------PDFPTGGIID-----VDR 248

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G+    ++  + IE    +   + V ++P+    + +++ I +   +K ++ I  + 
Sbjct: 249 YNDGKRGGQVKSRARIE--RIEDRVLSVRDLPFGKTTSTLIDSILK-ANDKGLIKIKRID 305

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           D +      + I L  G SAD  ++ LY +T  +   S N   +   KP    +  +L+ 
Sbjct: 306 DMTAETA-DIRIYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKPRFLGVSDLLRH 364

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            V    E++    +  L+  ++         + + +    +R    +P+ +TA   + + 
Sbjct: 365 SVKHTRELLQEDLRLQLHDRQEEYMGASLERLFIEHRIYKLRPFEEAPDQQTALDVIRKA 424

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                               +G      +++     +LE+++AR+     +     +  L
Sbjct: 425 LEPI----------------VGDSLLRPITDDDLARLLEIKMARILKFNLEKNEQLILRL 468

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDCIVREDM 538
                E   I      +         S+ +E      RRT+I                  
Sbjct: 469 TE---EMAQIQHHLDHITDYTIHYYSSLLEEYGAGWERRTQIG----------------- 508

Query: 539 VVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
                H G ++   +     +    +               +   S    ++ F   G  
Sbjct: 509 -----HFGTIEATKVVEENLKLYIDRKMGFAGTGI-KGGEYVCDCSEIDDMIVFFRDG-T 561

Query: 599 YKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVR 658
           Y            + R   +   +  ++                +N +Y+   TK   ++
Sbjct: 562 YLITKIEEKKFLGKERVLHINKYVRGDKRT-------------IYNAIYLDGKTKTSFIK 608

Query: 659 RNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL----TTKLGQCVRFPIS--A 712
           R  +S  I+            S+    S     +   +++         + + F      
Sbjct: 609 RFHVSASIRDRGYNLTMGTPGSKVLYFSANPNGEAESVMVKLLRGATSRRILVFEKDFAD 668

Query: 713 IRVFAGRNSVGVRG-------ISLAK------GDQVISMAIVLHADADYDERICYMKHMS 759
           I    GR++ G          I+L +      G + +     ++     D+     +  S
Sbjct: 669 I-AIKGRSAKGNIVTRAPIERITLKEQGGSTLGGRKVWFDPDVNRINYNDQGNYLGEFES 727

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF-ILTVSEKG--FGKRTSSYD 816
           + R L+   +E+  +     S   + S +  ++    + + ++  + +G  + KR S  D
Sbjct: 728 SDRILVILPSEQAYTTDFGESNHFSESPKVIEKYDPDKVWSVIYTTPEGVTYIKRVSMPD 787


>gi|310751822|gb|ADP09360.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751824|gb|ADP09361.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751826|gb|ADP09362.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751828|gb|ADP09363.1| DNA gyrase A [Pseudomonas andersonii]
 gi|310751830|gb|ADP09364.1| DNA gyrase A [Pseudomonas andersonii]
          Length = 142

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 113/142 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + PN+L+NG  GIAVGMATN
Sbjct: 121 PTKVPNLLINGSSGIAVGMATN 142


>gi|229496072|ref|ZP_04389794.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
 gi|229316968|gb|EEN82879.1| DNA gyrase subunit A [Porphyromonas endodontalis ATCC 35406]
          Length = 899

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 131/546 (23%), Positives = 226/546 (41%), Gaps = 53/546 (9%)

Query: 3   EHIISSDEEEEKGITSVS------ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           +     +  E              +    +  +L YA  VIL RA+P + DGLKPV RRI
Sbjct: 24  DSTPPQEGSEVTRPQPTDVVRLHSLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRI 83

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M    +  N    K A+I G+ M  +HPHG+A+I DAL ++ Q    +  LI+ QGN
Sbjct: 84  LYAMQ---LFENGHLHKVAKIVGQTMA-FHPHGDASINDALVQLGQ----KGFLIDTQGN 135

Query: 117 FGS-VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +G+ + GD  AA RY E +L   A  +L        +++  YDG+  EPV L  R+P +L
Sbjct: 136 WGNTLTGDEAAAGRYIEAKLSSLALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLL 193

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG+++ I  HN  E+++  +A +     +L         PDFPTG ++    
Sbjct: 194 AQGAEGIAVGLSSRIYPHNPKELLEAAIAYLRGESFELY--------PDFPTGGLLD--- 242

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G     ++  + IE    D   + +TE+P+     +++E I +   EK  + 
Sbjct: 243 --VDKYNDGHRGGALKCRAKIE--KIDDRVLSITELPFGKTTTSLIESILK-ANEKGKIK 297

Query: 296 IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
           I  + D +      + I+L  G S D  ++ LY +T  +   S N   +    P    + 
Sbjct: 298 IKHIDDMTAATA-DIRIQLPAGVSTDKTIDGLYAFTDCEVGLSPNACVIKEGTPVFLGVS 356

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            +LK      +E++V +  Y L + +D   V   L             I      +    
Sbjct: 357 DLLKYSADRTKELLVAQLNYRLGEVQDAL-VTASLERIF---------IENRIYKDKPFE 406

Query: 416 ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
           E    +     ++  I+ ++D  +         ++E   + +LE+++AR+     +    
Sbjct: 407 EAACEADALDHVRKRIEAMEDLVFVRP------ITEADLKRLLEIKMARILRFNIEKHEE 460

Query: 476 ELNSLGIE-IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIV 534
            +  L  +       +  S    +    + L          R+T I         +    
Sbjct: 461 RIAQLMRDARTIEKHLAHSTQYTIDYYTRLLKEFGAGW--TRKTTIARFGTIEATKVIEA 518

Query: 535 REDMVV 540
            E +  
Sbjct: 519 TEKLYF 524


>gi|118132715|gb|ABK60210.1| topoisomerase IV [Shigella boydii]
          Length = 167

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 90/168 (53%), Positives = 121/168 (72%), Gaps = 3/168 (1%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  
Sbjct: 1   RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVL 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ PN+
Sbjct: 61  MAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNF 119

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP HNL EV    +A+
Sbjct: 120 DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 167


>gi|196230801|ref|ZP_03129662.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
 gi|196225142|gb|EDY19651.1| DNA topoisomerase (ATP-hydrolyzing) [Chthoniobacter flavus
           Ellin428]
          Length = 745

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 160/742 (21%), Positives = 270/742 (36%), Gaps = 113/742 (15%)

Query: 2   TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            E   +    E+       +    +N +L YA  VIL RA+P + DGLKPV RR+L  + 
Sbjct: 53  AELAPTRPAGEKVQNEQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLW 112

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-V 120
            M    + ++ K A + G  M K HPHG+A+I  AL  + Q    R  LIE QGN+G+ +
Sbjct: 113 DMD---DGRFHKVANVVGATM-KLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTL 164

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  AA RY E RL   A  +L      T  ++ +YDG  +EPV L A++P VL+ G  
Sbjct: 165 TGDAAAAARYIEARLTPFARDVL--FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAE 222

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVG++T I  HN  ++    +  +      +         PDFPTG       G    
Sbjct: 223 GIAVGLSTKILPHNFNDLCRAAINHLQGKTFRIL--------PDFPTGGT-----GDFTD 269

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y  G     ++  + IE+ S     I  TE+PY V   +++E I  L    +        
Sbjct: 270 YNDGERGGKVKVRARIEEHSKSVLCI--TELPYGVTTESLIESI--LAANAKGKIKIKHV 325

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG------YKPERFTL 354
           D++      +++ L  G+  D ++ QLY +TS Q   +     +         +P+   +
Sbjct: 326 DDNTASKVEILVHLPPGSQPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGV 385

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
             ILKA V   +E++ +  +  L +   + H    L       + + R I  S   E   
Sbjct: 386 RDILKASVDATKELLKQELEIKLGELEQQWH-WDSLERIF-IEERIYRRIEKSQTWE--- 440

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
                          +++ I         +    ++E     + E+R+ R++   R    
Sbjct: 441 --------------SVLEEIRTGLKPFIGNLRREVTEEDIVRLTEIRIKRISAYNRFQAD 486

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--PRRTRIVEGLLDMEDEDC 532
             L  +   IKE    L +   L+         ++++      RRT   + +  ++    
Sbjct: 487 EALKKIEEAIKETKHHLKN---LVAYAVDWFERLQEKYGKGVKRRT-TYDEIAQIDASAV 542

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
           +     +      G++                               +   S   SVL  
Sbjct: 543 VSANQRLYVNREDGFIGLNW----------------------RQHEFVTECSILDSVLTI 580

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
              G +   KV        +                    I+         +  +     
Sbjct: 581 MRDGSLKVTKVADKVFMGRK--------------------IIHIGLWPKDGDMNFYTMVY 620

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL--DSRDEILSVETCTQEN------DILLTTKLGQ 704
           + G   +     F     S      L      +I+ +     E        + +  + G 
Sbjct: 621 QDGETGKAFAKKFQIGGLSRDKLYSLVKSEDSKIIFLHISPSEQAMPKTLHVSVDGRSGA 680

Query: 705 CVR---FPISAIRVFAGRNSVG 723
            VR   F ++A+   + R S G
Sbjct: 681 RVRELDFDLTAL-PVSTRTSKG 701


>gi|1296997|emb|CAA64975.1| DNA gyrase subunit A [Rhodobacter sphaeroides]
          Length = 148

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 98/148 (66%), Positives = 114/148 (77%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRIL+ M + G   +K Y K AR  G+ MGKYHPHG+ AIY AL RMAQ +S
Sbjct: 1   RDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYGALVRMAQPFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + L L++GQGNFGS+DGD  AA RYTE R+ K A FLL D+ KDTVDF+ NYDG  +EP 
Sbjct: 61  MGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAPFLLADIDKDTVDFQDNYDGKDREPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL AR+PN+LVNG GGIAVGMATNIP H
Sbjct: 121 VLPARFPNMLVNGAGGIAVGMATNIPPH 148


>gi|223936082|ref|ZP_03627996.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
 gi|223895304|gb|EEF61751.1| DNA topoisomerase (ATP-hydrolyzing) [bacterium Ellin514]
          Length = 701

 Score =  318 bits (815), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 160/712 (22%), Positives = 281/712 (39%), Gaps = 84/712 (11%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +   M  S+L YA  VI  RAIP+L DGLKPV RRIL+ + +   + + +++K A 
Sbjct: 56  VETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFIKVAT 112

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           ISG    +YHPHG AAI DAL  +    + R  LIEGQGNFG++  GDP AA RY ECRL
Sbjct: 113 ISGHC-AQYHPHGEAAIGDALVVIT---NKRY-LIEGQGNFGNIYTGDPAAAPRYIECRL 167

Query: 136 QKAA-HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
            + A + L +D   +  +F P+YDG  +EPV L ++ P +L+ G  GIAVGM+  I  HN
Sbjct: 168 TELARNELFND---ELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHN 224

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             E+++  +A++      +         PDFPTG ++  R      YA G+GSI +R   
Sbjct: 225 FPELLEAQIAILKKQPFKVL--------PDFPTGGLMDARE-----YADGKGSIKVRAKI 271

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                  D   +V+ EIP      +++  I +  R+ +I   + + D +  +   + I+ 
Sbjct: 272 KA----KDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIKIKS-INDFTSEEA-EIEIKA 325

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
             G SAD +++ LY +T  +   S  ++ +   +P   T+  +L+   A   + + R  +
Sbjct: 326 PSGVSADQLIDALYAFTDCEMSISSRIIVIRNNRPVEMTVSEVLRENTAQLVDTLKRELE 385

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
               K ++  H    + I +   + + + I      E                  + + +
Sbjct: 386 LKEKKLQEELHFKTLVRIFIE--NRIYKKIEQCKTNE-----------------AVYEAV 426

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
            D       +    L +     +L +R+ R++    +  R E++ +  ++ E    L + 
Sbjct: 427 YDGFKPFRKEMIRDLVDTDVEMLLGVRIRRISLFDINKHREEIDKIKADLSETAKHLKN- 485

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
             L       L ++ ++        I   L      D +  +D+                
Sbjct: 486 --LTKYAIGRLEALLEKYG-----PIYPRLTKSSRYDEVEAKDV---------------- 522

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            ++A +      SG V             +    +L     G     ++       P   
Sbjct: 523 AFKAFKVAYDRESGYVGHKVSGEEFRVDCTKFDKLLLIFRDGHYKVTELQEKLFVGPDVV 582

Query: 615 ---GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
                    I +L    R  T +          N       +   +       F + +  
Sbjct: 583 YCGIPDRDRIFTLAYTNREATYLKRFTFGGIIMNKEYFCIPEKSKI------LFFEPDTP 636

Query: 672 GKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
            +I +K          +      D+ +     +  +  I  +     +   G
Sbjct: 637 AQIYIKYKPAAYQKVAQQTANPADVAVKGAKTRGNQISIKDVSAINSKPPRG 688


>gi|117654317|gb|ABK55589.1| DNA gyrase subunit A [Bacillus sonorensis]
          Length = 204

 Score =  318 bits (814), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 125/203 (61%), Positives = 162/203 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKR 292
           EIPYQVNKA ++EKIA+LVR+K+
Sbjct: 181 EIPYQVNKARLIEKIADLVRDKK 203


>gi|192382604|gb|ACF04323.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 118/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|38327353|gb|AAR17704.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327405|gb|AAR17730.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  317 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 87/150 (58%), Positives = 118/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|47834514|gb|AAT38944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 169

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 103/167 (61%), Positives = 129/167 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 122

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGA 229
           AVGMATNIP HNL EV++GC+A ID+ DI ++ LME I GPDFPT A
Sbjct: 123 AVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAA 169


>gi|302340476|ref|YP_003805682.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
 gi|301637661|gb|ADK83088.1| DNA topoisomerase (ATP-hydrolyzing) [Spirochaeta smaragdinae DSM
           11293]
          Length = 643

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 164/706 (23%), Positives = 277/706 (39%), Gaps = 98/706 (13%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
            ++L YA  VI  RAIPD+ DGLKPV RRIL  + ++    + K+ K A I G  M KYH
Sbjct: 10  RNFLEYASYVIKDRAIPDIGDGLKPVQRRILHSLFEVD---DGKFHKVANIVGHCM-KYH 65

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAAHFLLDD 145
           PHG+A+IY AL  +A     + L I+ QGNFG+ + GD  +A RY ECR+   A  +L  
Sbjct: 66  PHGDASIYSALVVLA----NKDLFIDKQGNFGNPITGDEASAARYIECRILPFAKKVLY- 120

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
                 ++  +YDG  +EPVV  ++ P +L+ G  GIAVGM+T I  HN  EV+   V  
Sbjct: 121 -SPQVTEYVDSYDGRNREPVVFPSKIPVLLIQGAEGIAVGMSTKILPHNFEEVLRAVV-- 177

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
                            PDFP G ++       + Y  G G ++IR     +       +
Sbjct: 178 ------SELKGEPFQLFPDFPNGGLVD-----VSDYQDGLGKVLIRAKLDTKDPK----R 222

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           I++ EIP+     +++  I    R+ R+  I+ + D +      + I+L RG     +++
Sbjct: 223 IIIKEIPFGTTTESLIASIEAAARKGRVK-ISQINDYTSE-AVEIEIKLARGVYTKEVVD 280

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            L+ YT  +   SVN++ +    P + T+  +++        V+    K      +++ H
Sbjct: 281 SLFAYTDCEYSVSVNLLVIKDGLPTQMTVPEVIRYHARQLVAVLEAELKVEEADLKEKIH 340

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
                 I +   + + + I      ET    +++                        + 
Sbjct: 341 ARTLERIFIE--ERIYKRIEEMKTRETVISAVIEGFKP-----------------FKKEI 381

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS-RSRLLGIIKQE 504
              ++E     +L++ + R++    +  R EL  L   +KE    L +  +  +G I+  
Sbjct: 382 PREVTEEDVERLLKIPIRRISLYDIEKARKELAELQGRLKEVRYHLKNLVAYAIGFIEGV 441

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L         PRRT++         E      D+                          
Sbjct: 442 LKDTAGRF--PRRTKVGRFEKVDVREVAARDLDLRY-----------------------D 476

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
            ++G +  D      LF V+ +  VL     G     +V  +P      +G     I   
Sbjct: 477 AKTGYLGYDLKGGDSLFAVNQYDRVLIIRGDGTY---RVTDVPEKMFVGKGLMYCGIADK 533

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            +       + + +             TKH  ++R  +  FI           L    + 
Sbjct: 534 EELADCHFSIVYQD-----------TVTKHLYIKRCTIEQFILEKDYDL----LPEGAKP 578

Query: 685 LSVETCTQENDILLTTKLGQCVRFPISAIRV----FAGRNSVGVRG 726
           L   T  ++ +I+L  K    ++      RV         + GVR 
Sbjct: 579 L-AFTTREDQEIVLNYKPKPRLKILEENFRVSDFLVKSVKAGGVRL 623


>gi|192382562|gb|ACF04302.1| GyrA [Neisseria meningitidis]
 gi|192382564|gb|ACF04303.1| GyrA [Neisseria meningitidis]
 gi|192382566|gb|ACF04304.1| GyrA [Neisseria meningitidis]
 gi|192382568|gb|ACF04305.1| GyrA [Neisseria meningitidis]
 gi|192382570|gb|ACF04306.1| GyrA [Neisseria meningitidis]
 gi|192382572|gb|ACF04307.1| GyrA [Neisseria meningitidis]
 gi|192382574|gb|ACF04308.1| GyrA [Neisseria meningitidis]
 gi|192382576|gb|ACF04309.1| GyrA [Neisseria meningitidis]
 gi|192382578|gb|ACF04310.1| GyrA [Neisseria meningitidis]
 gi|192382580|gb|ACF04311.1| GyrA [Neisseria meningitidis]
 gi|192382616|gb|ACF04329.1| GyrA [Neisseria meningitidis]
 gi|192382618|gb|ACF04330.1| GyrA [Neisseria lactamica]
 gi|192382624|gb|ACF04333.1| GyrA [Neisseria lactamica]
 gi|192382626|gb|ACF04334.1| GyrA [Neisseria lactamica]
 gi|192382632|gb|ACF04337.1| GyrA [Neisseria lactamica]
 gi|192382634|gb|ACF04338.1| GyrA [Neisseria lactamica]
 gi|192382636|gb|ACF04339.1| GyrA [Neisseria meningitidis]
 gi|192382638|gb|ACF04340.1| GyrA [Neisseria meningitidis]
 gi|192382640|gb|ACF04341.1| GyrA [Neisseria meningitidis]
 gi|192382642|gb|ACF04342.1| GyrA [Neisseria meningitidis]
 gi|192382646|gb|ACF04344.1| GyrA [Neisseria meningitidis]
 gi|192382648|gb|ACF04345.1| GyrA [Neisseria meningitidis]
 gi|192382654|gb|ACF04348.1| GyrA [Neisseria meningitidis]
 gi|192382656|gb|ACF04349.1| GyrA [Neisseria meningitidis]
 gi|192382660|gb|ACF04351.1| GyrA [Neisseria meningitidis]
 gi|192382662|gb|ACF04352.1| GyrA [Neisseria meningitidis]
 gi|192382664|gb|ACF04353.1| GyrA [Neisseria meningitidis]
 gi|192382666|gb|ACF04354.1| GyrA [Neisseria meningitidis]
 gi|192382668|gb|ACF04355.1| GyrA [Neisseria meningitidis]
 gi|192382670|gb|ACF04356.1| GyrA [Neisseria meningitidis]
 gi|192382672|gb|ACF04357.1| GyrA [Neisseria meningitidis]
 gi|192382674|gb|ACF04358.1| GyrA [Neisseria meningitidis]
 gi|192382676|gb|ACF04359.1| GyrA [Neisseria meningitidis]
 gi|192382678|gb|ACF04360.1| GyrA [Neisseria meningitidis]
 gi|192382680|gb|ACF04361.1| GyrA [Neisseria meningitidis]
 gi|192382682|gb|ACF04362.1| GyrA [Neisseria meningitidis]
 gi|192382684|gb|ACF04363.1| GyrA [Neisseria meningitidis]
 gi|192382686|gb|ACF04364.1| GyrA [Neisseria meningitidis]
 gi|192382688|gb|ACF04365.1| GyrA [Neisseria meningitidis]
 gi|192382690|gb|ACF04366.1| GyrA [Neisseria meningitidis]
 gi|192382692|gb|ACF04367.1| GyrA [Neisseria meningitidis]
 gi|192382694|gb|ACF04368.1| GyrA [Neisseria meningitidis]
 gi|192382696|gb|ACF04369.1| GyrA [Neisseria meningitidis]
 gi|192382698|gb|ACF04370.1| GyrA [Neisseria meningitidis]
 gi|192382700|gb|ACF04371.1| GyrA [Neisseria meningitidis]
 gi|192382702|gb|ACF04372.1| GyrA [Neisseria meningitidis]
 gi|192382704|gb|ACF04373.1| GyrA [Neisseria meningitidis]
 gi|192382706|gb|ACF04374.1| GyrA [Neisseria meningitidis]
 gi|192382708|gb|ACF04375.1| GyrA [Neisseria lactamica]
 gi|192382710|gb|ACF04376.1| GyrA [Neisseria meningitidis]
 gi|192382712|gb|ACF04377.1| GyrA [Neisseria meningitidis]
 gi|192382716|gb|ACF04379.1| GyrA [Neisseria lactamica]
 gi|192382718|gb|ACF04380.1| GyrA [Neisseria lactamica]
 gi|192382720|gb|ACF04381.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  317 bits (812), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|75761793|ref|ZP_00741728.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74490726|gb|EAO54007.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 362

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 137/431 (31%), Positives = 218/431 (50%), Gaps = 71/431 (16%)

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMV 539
              I E   IL+   ++L II++EL  VK+  +  RRT I  G +  +EDED I  +++ 
Sbjct: 1   MNLIAELKAILADEEKVLEIIREELTEVKERFNDKRRTEITIGGMEFIEDEDLIPEQNIA 60

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T++H GY+KR+P S Y+ Q RGG+G  G+   D+DFV  L   STH  +LFF++ G VY
Sbjct: 61  ITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVY 120

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
           + K + +P  S  A+G  +IN+L +++GE I  I+P  E     ++ ++ F TK G  +R
Sbjct: 121 RTKGYEIPEYSRTAKGLPIINLLGVDKGEWINAIIPIREFG---DDQFLFFTTKQGISKR 177

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             LS F  I  +G IA+ L   DE++SV   + + DI++ T  G  +RF    +R   GR
Sbjct: 178 TPLSSFANIRTNGLIAISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSM-GR 236

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV+ I+L + DQV+ M IV                                      
Sbjct: 237 NAAGVKAITLGEEDQVVGMEIVEE------------------------------------ 260

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            +  +L V++ G+GKRT   ++R+ +R GKG++  +++  N  G
Sbjct: 261 -----------------DTNVLIVTKNGYGKRTPVEEYRLQSRGGKGLKTCNITDKN--G 301

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            LVAV  V   + I+L++  G +IR+PV++I    R T+GV +                E
Sbjct: 302 KLVAVKSVTGEEDIMLITAAGVIIRMPVDQISQMGRNTQGVRLIRLED-----------E 350

Query: 900 SEIVDEAESTE 910
            +  D ++STE
Sbjct: 351 QDGSDSSKSTE 361


>gi|203283964|ref|YP_002221704.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
 gi|201083407|gb|ACH92998.1| DNA topoisomerase IV, A subunit [Borrelia duttonii Ly]
          Length = 627

 Score =  316 bits (810), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 150/658 (22%), Positives = 273/658 (41%), Gaps = 63/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLY--SKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +      L         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILRAVKSELLGEAYKLY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIEPT 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               D + I++ E+P+     +++  I   +R+  I   +   ++   +   + + L RG
Sbjct: 218 D---DNKAILIKELPFGETTESLIASIERAIRKNYIKVSS--INDFTTENVEIELTLPRG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A+ I+ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++V+        
Sbjct: 273 VYANEIIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIKFHAEHLQKVLK------- 325

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L    +   E + I       E    ++++     SD+   +D++   
Sbjct: 326 --MELELERSKILEKIFSKTLEQIFI-------EHKIYKILETISKESDV---VDIVMSE 373

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
               G   +  +       +L++ + +++    D        + I  KE   + S+   +
Sbjct: 374 IVKYGDRFSRKIVLDDIENLLKIPIRKISMFDIDK---NNKDIQILSKELKSVESNIESI 430

Query: 498 LGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
                  +  +  +      R+T I         E       + V++   G+V    +  
Sbjct: 431 KNYAINFIDKLLAKYSKMYHRKTEISLIESKNAREIATKNMKIYVSL-KAGFVGTSLIDG 489

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDL----FIVSTHTSVLFFSSLG---FVYKEKVWRLPI 608
                     +  +  +D   + ++    FI   + SVL +        V+         
Sbjct: 490 EFIGNASYYDKVLIFKKDSYILKNIEDKTFIEKNNVSVLVYDINNSKEQVFSIIYLNKVD 549

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   L+      +     F +    +N  +V F+T    V+   +++F+
Sbjct: 550 NFYYVKRFRIDKFLTDKVYYFLNKDDEFIDFT--FNAQFVAFSTSRDVVKMIDINNFM 605


>gi|38327357|gb|AAR17706.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327359|gb|AAR17707.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327363|gb|AAR17709.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327365|gb|AAR17710.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327369|gb|AAR17712.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327371|gb|AAR17713.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327373|gb|AAR17714.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327379|gb|AAR17717.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327383|gb|AAR17719.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327387|gb|AAR17721.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327393|gb|AAR17724.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327395|gb|AAR17725.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327397|gb|AAR17726.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327399|gb|AAR17727.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327401|gb|AAR17728.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/150 (57%), Positives = 117/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|192382620|gb|ACF04331.1| GyrA [Neisseria lactamica]
 gi|192382622|gb|ACF04332.1| GyrA [Neisseria lactamica]
 gi|192382630|gb|ACF04336.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELRNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|187917917|ref|YP_001883480.1| DNA topoisomerase IV subunit A [Borrelia hermsii DAH]
 gi|119860765|gb|AAX16560.1| hypothetical protein BH0035 [Borrelia hermsii DAH]
          Length = 627

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 153/677 (22%), Positives = 268/677 (39%), Gaps = 95/677 (14%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIKTLLKDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNAM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITSYEPSYDGRNNEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     +L         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILSAVKSELLGESYELY--------PDFPTGGIVD-----VNEYADGNGKVLVRARIEPT 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               D + I++ E+P+     +++  I   +R+  I   +   ++   +   + + L RG
Sbjct: 218 D---DNKAILIKELPFGETTESLIASIERAIRKNYIKVSS--INDFTTENVEIELTLPRG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++V+        
Sbjct: 273 VYASEVIEKLYHYTNCQVSISVNLLLLSERYPVIYTITDIIKFHAEHLQKVLK------- 325

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L    +   E + I       E    ++++     SD+   I L +  
Sbjct: 326 --MELELEKSKILEKIFSKTLEQIFI-------EKKIYKILETISKESDVVG-IVLSEIL 375

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            Y       + L ++    +L++ + +++    D    ++ +L  E++     + S   +
Sbjct: 376 KYKDSLSRDIVLDDI--ENLLKIPIRKISMFDIDKNNKDIRTLSKELRSVESNIRS---I 430

Query: 498 LGIIKQELLSVKDELD--TPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            G     +  +  +      R+T I         E       + + +   G+V    +  
Sbjct: 431 RGYSINFVDKLLAKYSKIYHRKTEISLIKSKNVREIATKNMKVYLNL-KAGFVGTSLID- 488

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
                                   +   S +  +L F      Y  K             
Sbjct: 489 ---------------------GEFIGNASYYDKILIFKKN--SYILKNIE----DKTFID 521

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           K  +N L  +       +        + N  Y         V+R K+  FI         
Sbjct: 522 KNNVNALIYDINNSKDQVFSIIYLSKTDNFYY---------VKRFKIDKFITDKVYKF-- 570

Query: 676 MKLDSRDEILSVETCTQ 692
             L+  DE + +     
Sbjct: 571 --LNDGDEFVDLALNPG 585


>gi|192382650|gb|ACF04346.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDG   EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGREHEPLVLPTRFP 148


>gi|203287507|ref|YP_002222522.1| DNA topoisomerase IV [Borrelia recurrentis A1]
 gi|201084727|gb|ACH94301.1| DNA topoisomerase IV [Borrelia recurrentis A1]
          Length = 627

 Score =  315 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 152/656 (23%), Positives = 276/656 (42%), Gaps = 59/656 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MNIKTLLRDNFLQYSSYVIKDRAIASVIDGFKPVQRRIIHSLFEMN---DGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  MA     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNMA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   + P+YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFEVLY--SKEITTYEPSYDGRNAEPLIFPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +      L         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILRAVKSELLGEAYKLY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETT 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
               D + I++ E+P+     +++  I   +R+  I   +   ++   +   + + L RG
Sbjct: 218 D---DNKAILIKELPFGETTESLIASIERAIRKNYIKVSS--INDFTTENVEIELTLPRG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A+ I+ +LY YT+ Q   SVN++ L+   P  +T+  I+K      ++V+        
Sbjct: 273 VYANEIIEKLYHYTNCQVSISVNLLLLSDRYPVIYTVTDIIKFHAEHLQKVLK------- 325

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L    +   E + I       E    ++++     SD+   +D++   
Sbjct: 326 --MELELERSKILEKIFSKTLEQIFI-------EHKIYKILETISKESDV---VDIVMSE 373

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
               G   +  +       +L++ + +++    D    ++  L  E+K     + S    
Sbjct: 374 IVKYGDRFSRKIVLDDIENLLKIPIRKISMFDIDKNNKDIQILSKELKSVESNIKSIKNY 433

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
                 +LL+   ++   R+T I         E       + V++   G+V    +    
Sbjct: 434 AINFIDKLLAKYSKMY-HRKTEISLIESKNAREIATKNMKIYVSL-KAGFVGTSLIDGEF 491

Query: 558 AQRRGGKGRSGVVMRDEDFVTDL----FIVSTHTSVLFFSSLG---FVYKEKVWRLPIGS 610
                   +  +  +D   + ++    FI   + SVL +        V+           
Sbjct: 492 IGNASYYDKILIFKKDSYILKNIEDKTFIEKNNVSVLVYDINNSKEQVFSIIYLNKVDNF 551

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
              +   +   L+      +     F +    +N  +V F+T    V+   +++F+
Sbjct: 552 YYVKRFRIDKFLTDKVYYFLNKDDEFIDFT--FNAQFVAFSTSRDVVKMIDINNFM 605


>gi|290790184|pdb|3L6V|A Chain A, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
 gi|290790185|pdb|3L6V|B Chain B, Crystal Structure Of The Xanthomonas Campestris Gyrase A
           C- Terminal Domain
          Length = 370

 Score =  315 bits (808), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 132/381 (34%), Positives = 204/381 (53%), Gaps = 24/381 (6%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
            D I  ED+VVT+SH GY KR P+S YRAQRRGG+GRS    ++EDF+  L++V+TH ++
Sbjct: 1   MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           L F+S G V+   V +LP     ARG+ +IN + L  GER+  ++P  E     +N YV 
Sbjct: 61  LTFTSSGKVFWLPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYA---DNRYVF 117

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT++G V++  LS+F      GKIA+ LD  D ++ V     + D+LL    G+ VRF 
Sbjct: 118 MATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFG 177

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +R   GR + GVRGI LAKG++V+S+ +                  S +   +  + 
Sbjct: 178 ESTVRSM-GRTATGVRGIRLAKGEEVVSLIV------------------SERAGGVEDEV 218

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           E+ ++ +   + +G               +ILT +E G+GKRT   ++    R  +G+  
Sbjct: 219 EDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIG 278

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              ++ N  G LV    +   D+++L+SD GTL+R   +EI    R T+GV +   +K E
Sbjct: 279 IQTTERN--GKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKGE 336

Query: 890 RVVSVERIRESEIVDEAESTE 910
           ++ +VER+  S    E    E
Sbjct: 337 KLQAVERLDASLEEPEDVVDE 357



 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 62/136 (45%), Gaps = 4/136 (2%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCT 691
              +   + +  Y++ AT++G  +R  L+++ +  R  +  + +       +++      
Sbjct: 236 AVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG 295

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             ++++L +  G  VR   S I    GRN+ GV  I L+KG+++ ++  +  +  + ++ 
Sbjct: 296 STDEVMLISDGGTLVRTRGSEI-SRVGRNTQGVTLIRLSKGEKLQAVERLDASLEEPEDV 354

Query: 752 ICYMKHMSAQRRLISG 767
           +     +++      G
Sbjct: 355 VDEAVAITSDAPPAEG 370


>gi|313192111|emb|CBX19915.1| gyrase A [Clostridium perfringens]
          Length = 277

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 151/276 (54%), Positives = 210/276 (76%), Gaps = 1/276 (0%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMA
Sbjct: 3   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 62

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G 
Sbjct: 63  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGR 122

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G
Sbjct: 123 IVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 181

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++
Sbjct: 182 MRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKD 241

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           V+ RRT++ LNKA++RAH+L GL IA+ N+DEV+ I
Sbjct: 242 VITRRTQFELNKAKERAHILEGLIIALDNIDEVINI 277


>gi|261599189|gb|ACX85657.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 114/157 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           N+D + +EP VL A +PN+LVNG  GI+ G AT+IP 
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPP 160


>gi|36988433|gb|AAQ87910.1| DNA gyrase subunit A [Aeromonas caviae]
 gi|36988448|gb|AAQ87911.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 146

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/146 (58%), Positives = 115/146 (78%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           VI+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+
Sbjct: 1   VIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYN 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ P
Sbjct: 61  TIVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           NYDG+   P V+  + P +LVNG  G
Sbjct: 121 NYDGTEMIPAVMPTKVPTLLVNGSSG 146


>gi|38327355|gb|AAR17705.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327361|gb|AAR17708.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327367|gb|AAR17711.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327375|gb|AAR17715.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327377|gb|AAR17716.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327381|gb|AAR17718.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327385|gb|AAR17720.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327389|gb|AAR17722.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327391|gb|AAR17723.1| gyrase A [Neisseria gonorrhoeae]
 gi|38327403|gb|AAR17729.1| gyrase A [Neisseria gonorrhoeae]
          Length = 150

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/150 (57%), Positives = 118/150 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           D+ ++TV+F PNYDGS  EP+VL  R+P +
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFPTL 150


>gi|315928687|gb|EFV07969.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 305]
          Length = 537

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 184/615 (29%), Positives = 308/615 (50%), Gaps = 122/615 (19%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           ++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT + L KAR RAH+L GL I
Sbjct: 1   MESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ N+DEV+ +I+ S +  TAR  L+ +                            LSE+
Sbjct: 61  ALDNIDEVIALIKNSSDNNTARDSLVAK--------------------------FGLSEL 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L  +I+ EL  ++ + 
Sbjct: 95  QANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF 154

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
           D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V   
Sbjct: 155 DVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTY 214

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+GKA++N+++L   E+I  
Sbjct: 215 DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMA 274

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
           I+P  + +    +  + F TK+G V+R  LS++  I   G  A+ LD  DE+++     +
Sbjct: 275 IIPTTDFD---ESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRAINLDENDELVTAIIVQR 331

Query: 693 END------------------------------------ILLTTKLGQCVRFPISAIRVF 716
           + D                                    +   TK G C++FP++ +R  
Sbjct: 332 DEDEIFATGGEENLENQEIENLDDENLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREI 391

Query: 717 AGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
            GR S GV  I   +  D+++   ++ + +                              
Sbjct: 392 -GRVSRGVTAIKFKEKNDELVGAVVIENDE------------------------------ 420

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                                 Q IL++S KG GKRT++ ++R+ +R GKG+    +++ 
Sbjct: 421 ----------------------QEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEK 458

Query: 836 NEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
            +   L++V  V++   ++ ++  G +IRV +  IR A R T GV I    +++ VVS+ 
Sbjct: 459 TK--DLISVVIVDETMDLMALTSSGKMIRVDMQSIRKAGRNTSGV-IVVNVENDEVVSIA 515

Query: 896 RIRESEIVDEAESTE 910
           +  + E  ++  S E
Sbjct: 516 KCPKEENDEDELSDE 530


>gi|213161597|ref|ZP_03347307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 152

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/146 (61%), Positives = 119/146 (81%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGS 160
           L K AH L+ DL K+TVDF  NYDG+
Sbjct: 127 LAKIAHGLMADLEKETVDFVDNYDGT 152


>gi|192382628|gb|ACF04335.1| GyrA [Neisseria lactamica]
 gi|192382644|gb|ACF04343.1| GyrA [Neisseria meningitidis]
          Length = 148

 Score =  315 bits (806), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/148 (58%), Positives = 117/148 (79%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|46445985|ref|YP_007350.1| DNA topoisomerase IV subunit A [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399626|emb|CAF23075.1| putative DNA gyrase (topoisomerase) chain A [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 633

 Score =  314 bits (805), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 139/539 (25%), Positives = 236/539 (43%), Gaps = 53/539 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            I   MQ  Y+ YA  VIL RAIP++ DGLKPV RRIL+ +    +  + K  K A ++G
Sbjct: 3   DIKQLMQRHYIKYASYVILDRAIPNVIDGLKPVQRRILYTLW---LMHDGKLHKVANVAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           + M   HPHG+A I +AL  +A   +    L++ QGNFG++  GDP AA RY E RL   
Sbjct: 60  QTMA-LHPHGDAPITEALINIA---NKGY-LLDQQGNFGNLFTGDPAAAARYIETRLTPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L     D     P+YDG  QEP  L A+ P VL+ G  GIAVGM+T+I  HN  E+
Sbjct: 115 AKETL--FNADLTSTIPSYDGRHQEPTCLPAKIPVVLLQGADGIAVGMSTHIFPHNFLEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++     +         PDFPTG ++       + Y  G+G + +R    +  
Sbjct: 173 LEAEIAILEGKPFSIL--------PDFPTGGIMD-----ASDYNKGKGKVRLRAKIEVRD 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +V+TEI Y     +++  I E  ++ +I    D  ++   +   + I+L RG 
Sbjct: 220 AK----SLVITEICYGTTTESLIRSIDEAAKKGKIKI--DAINDYTAEKVEIEIKLPRGQ 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +L  LY YT  Q      +V +    P    +  IL+      +E + R  +   +
Sbjct: 274 YAQDLLEALYAYTECQVTLHSQIVVIKDNYPWETDVDSILRLHTEKLQEYLQRELELERD 333

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
                 H+   +       ++ +  I            L +R  + +  +++   I  S 
Sbjct: 334 ------HLNEKIF------EKTLEQIFIE-------NRLYKRIEDLTSYEEVHVTIAASL 374

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               S      +E     +L + + R+T       + E+ S   ++      L +   ++
Sbjct: 375 IPFHSQLLRIPTEQDRERLLSIPIRRITRFDLAKNQEEILSHQEQLTRVEKDLKN---II 431

Query: 499 GIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
            +  + L S+  +  +  +R   ++ +  ++      R+  V      G++     S Y
Sbjct: 432 KVAIRYLNSLIKKFASEHKRKTEIQVIQQVDTRAMETRQITVCFDPTTGFIGTKVTSNY 490


>gi|33338052|gb|AAQ13648.1|AF173981_1 DNA gyrase [Pasteurella multocida]
          Length = 143

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 92/143 (64%), Positives = 109/143 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG+ A+YD L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDIAVYDTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATN 189
           L  + P +LVNG  GIAVGMAT 
Sbjct: 121 LPTKVPALLVNGSSGIAVGMATK 143


>gi|33338048|gb|AAQ13646.1|AF173979_1 DNA gyrase [Pasteurella multocida]
          Length = 141

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 91/141 (64%), Positives = 109/141 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG++A+YD L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVGMA 187
           L  + P +LVNG  GIAVGMA
Sbjct: 121 LPTKVPALLVNGSSGIAVGMA 141


>gi|284037117|ref|YP_003387047.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
 gi|283816410|gb|ADB38248.1| DNA topoisomerase (ATP-hydrolyzing) [Spirosoma linguale DSM 74]
          Length = 904

 Score =  314 bits (805), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 125/564 (22%), Positives = 239/564 (42%), Gaps = 57/564 (10%)

Query: 1   MTEHIISSDEEEEKG---ITSVSITDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRI 56
           +T+ ++  ++  +     +   ++   +  +Y L YA  VIL RA+P + DGLKPV RRI
Sbjct: 28  LTDDLVPEEQPIDTKTEVLHDQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRI 87

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L  + +M    + ++ K A + G+ M ++HPHG+A+I +AL  + Q    + LL + QG+
Sbjct: 88  LHALKEMD---DGRFNKVANVIGQTM-QFHPHGDASIGEALVNIGQ----KELLFDTQGS 139

Query: 117 FGSV-DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           +G V  GD  AA RY E RL K A   +      T +++ +YDG  +EP+ L  ++P +L
Sbjct: 140 WGDVRTGDGAAAPRYIEVRLSKFAQDAIY--NDKTTEWQLSYDGRKREPITLPVKFPLLL 197

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
             G  GIAVG++T I  HN  E++D  + ++ +  + L         PDF TG +I    
Sbjct: 198 AQGVEGIAVGLSTKILPHNFNELIDASINILKDKPVSL--------FPDFQTGGLID--- 246

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
              + Y  G     +R  + IE+       I   ++PY V  + +++ I +     +I  
Sbjct: 247 --VSNYNDGHRGGKVRVRAKIEEVDKKILAI--RDVPYGVTTSQLIDSIVKAAELGKIRI 302

Query: 296 IA-----DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
            A         ++  +   +++ L+ G S DV ++ LY +T  +   S N   + G KP 
Sbjct: 303 KAPSRNVAAVVDNTAKDVEILVHLQPGVSPDVTIDALYAFTDCEVSISPNACVIIGDKPH 362

Query: 351 RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
             ++  IL+        ++ R  +   ++  +R        I +   + + R I      
Sbjct: 363 FVSVTDILRVNTHQTVHLLQRELEIRRSELMERLLYSSLEKIFIE--NRIYRKIEECET- 419

Query: 411 ETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
                            + +++ ID +           +++     + E+++ R++    
Sbjct: 420 ----------------FEAVLEAIDKALKPHKKLFYRVITQDDLIRLTEIKIKRISKYDG 463

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
                 +  L  E+ E  D L++   +          ++ +    R  +      +    
Sbjct: 464 FKAEELMRRLEQELAETEDNLAN---ITRFAIAYYKDLQKKYGKGRERKTEIRAFNTIAA 520

Query: 531 DCIVREDMVVTVSHLGYVKRVPLS 554
             +   +  + V   G      L 
Sbjct: 521 SVVAAANQKLYVDREGGFIGYGLK 544


>gi|192382582|gb|ACF04312.1| GyrA [Neisseria gonorrhoeae]
 gi|192382584|gb|ACF04313.1| GyrA [Neisseria gonorrhoeae]
 gi|192382586|gb|ACF04314.1| GyrA [Neisseria gonorrhoeae]
 gi|192382588|gb|ACF04315.1| GyrA [Neisseria gonorrhoeae]
 gi|192382590|gb|ACF04316.1| GyrA [Neisseria gonorrhoeae]
 gi|192382592|gb|ACF04317.1| GyrA [Neisseria gonorrhoeae]
 gi|192382594|gb|ACF04318.1| GyrA [Neisseria gonorrhoeae]
 gi|192382596|gb|ACF04319.1| GyrA [Neisseria gonorrhoeae]
 gi|192382598|gb|ACF04320.1| GyrA [Neisseria gonorrhoeae]
 gi|192382600|gb|ACF04321.1| GyrA [Neisseria gonorrhoeae]
 gi|192382602|gb|ACF04322.1| GyrA [Neisseria gonorrhoeae]
 gi|192382606|gb|ACF04324.1| GyrA [Neisseria gonorrhoeae]
 gi|192382608|gb|ACF04325.1| GyrA [Neisseria gonorrhoeae]
 gi|192382610|gb|ACF04326.1| GyrA [Neisseria gonorrhoeae]
 gi|192382612|gb|ACF04327.1| GyrA [Neisseria gonorrhoeae]
 gi|192382614|gb|ACF04328.1| GyrA [Neisseria gonorrhoeae]
          Length = 148

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|320537065|ref|ZP_08037044.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
 gi|320146140|gb|EFW37777.1| DNA gyrase/topoisomerase IV, A subunit [Treponema phagedenis F0421]
          Length = 646

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 141/633 (22%), Positives = 258/633 (40%), Gaps = 58/633 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I      ++L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGH 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I +AL  +A     + L I  QGNFG++  GD  +A RY ECR+ +  
Sbjct: 61  CM-KYHPHGDASIGNALVVLA----NKELFISKQGNFGNIYTGDEASAARYIECRITEFG 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL     +   + P+YDG  +EP+V  A+ P VLV G  GIAVGM+T I  HN+ E++
Sbjct: 116 KSLLY--NPNITQYVPSYDGRNKEPLVFRAKIPVVLVIGAEGIAVGMSTKILPHNIKEIL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +  +  I+     L         PDFPTG +I       + Y  G G +++R        
Sbjct: 174 EAEIQCIEGKPFALY--------PDFPTGGLID-----VSEYGDGLGKVLVRAKLDTSDE 220

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                +I++ E+P+     +M+  I    +  ++  ++++ D +      + ++L RG  
Sbjct: 221 K----RILIKELPFGSTTESMITSIENASKSGKVK-VSEINDYTAET-VEIELKLPRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +  +++ LY +T  +   S N++ +    P++ T+  ++K  V    +++    +Y    
Sbjct: 275 SQDVVDSLYAFTECEQSISCNLLVIKNNLPQQMTVTDVIKNHVKQLLQILKDELEYERAM 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
            ++R H+     I +   + + + I            +++                    
Sbjct: 335 LQERLHMRTLERIFIE--ERIYKKIETMKTASGVITAVLKGFEP---------------- 376

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              ++    ++E     +L++ + R++    +  R E   +   +KE   +L +      
Sbjct: 377 -FRAELIRDITEDDVDKLLKIPIRRISLYDINKNRQETEEIQKRLKEIAKLLKNLKGYAR 435

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
            + + +L+  D     R+T I         E       +       GY+     +     
Sbjct: 436 SVLEGILAKLDSETVKRKTEITGFTKIDVKEAVSRDISLRYD-EETGYLGTSVTTGKEIL 494

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK--EKVWRLPIGSPQARGKA 617
           +     R  ++ +            T      F   G  Y    +   L         K 
Sbjct: 495 KVTPYDRIFILRKSG------VYTVTDVPDRLFVDTGMWYCGFAEKEELSQVLFTLIYKD 548

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
                   +  R+   +   +     ++  ++F
Sbjct: 549 AKTGCPYIKRCRVEGYILNRDYLIIPDDATLLF 581


>gi|167957029|ref|ZP_02544103.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7c]
          Length = 417

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 146/472 (30%), Positives = 233/472 (49%), Gaps = 60/472 (12%)

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                       LSE+Q +AIL ++L RLTGL R+ I NEL  L   I++   IL+    
Sbjct: 4   EEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILADEQE 63

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGL-LDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
           +L IIK EL+ +K++    RR++++        DE+ I  ED VV ++   Y+KR   S 
Sbjct: 64  ILNIIKNELIEMKEKYGDQRRSKMINHELGKFSDEELIPEEDSVVLLTSENYIKRTLASD 123

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           YR Q RGGKG+ G+  ++ D +  +    TH  +LFF++ G V++ K + +P  S QA+G
Sbjct: 124 YRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASLQAKG 183

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            A +N+L L   E+IT I+ F +D    ++ Y+  AT  G +++  + D+  I  +G IA
Sbjct: 184 VAAVNLLQLQPEEKITAIIKFEKDAK--DDGYLFMATVKGTIKKTPVKDYANIRTNGLIA 241

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
           +KLD  DE+  ++  +  +DIL++T  GQ +RF     R   GR + GVRG+ L   D V
Sbjct: 242 IKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKDARSM-GRAARGVRGVRLRPNDSV 300

Query: 736 ISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL 795
           + M I                                                       
Sbjct: 301 VGMDIAND---------------------------------------------------- 308

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QII 854
            ++ +L +SE G+GK T   +F    R G GI+A  V+   + G +++V  +  +D + +
Sbjct: 309 -DRTLLVISENGYGKATKISNFPSHKRGGVGIKAAVVTA--KTGPIISVKTIQQDDIEAL 365

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           LVS +G  IRV + +I +  R T+GV I  T+ D+ V SV  + E    +E+
Sbjct: 366 LVSTQGQTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVASVGLMSERSSNEES 417


>gi|149346166|gb|ABR23654.1| gyrase A [Aeromonas veronii bv. sobria]
          Length = 143

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 113/143 (79%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNYDG+
Sbjct: 61  AQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRMARISHELLADLDKETVDWVPNYDGT 120

Query: 161 FQEPVVLCARYPNVLVNGGGGIA 183
              P V+  + PN+LVNG  GIA
Sbjct: 121 EMIPAVMPTKVPNLLVNGSSGIA 143


>gi|192382714|gb|ACF04378.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  314 bits (803), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYHTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|238810482|dbj|BAH70215.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810484|dbj|BAH70216.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810486|dbj|BAH70217.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810488|dbj|BAH70218.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810490|dbj|BAH70219.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810492|dbj|BAH70220.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810494|dbj|BAH70221.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810496|dbj|BAH70222.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810498|dbj|BAH70223.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810500|dbj|BAH70224.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810502|dbj|BAH70225.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810504|dbj|BAH70226.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810506|dbj|BAH70227.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810508|dbj|BAH70228.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 119/154 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|213865327|ref|ZP_03387446.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 357

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 134/383 (34%), Positives = 213/383 (55%), Gaps = 59/383 (15%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
             ED I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH 
Sbjct: 8   NIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHD 67

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
           ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   
Sbjct: 68  TILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN--- 124

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V  AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VR
Sbjct: 125 VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVR 184

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F   A+R   GR + GVRGI LA  D+V+S+ I     A                     
Sbjct: 185 FKEDAVRAM-GRTATGVRGIKLAGDDKVVSLIIPRGEGA--------------------- 222

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                           ILTV++ G+GKRT++ ++   +R+ +G+
Sbjct: 223 --------------------------------ILTVTQNGYGKRTAADEYPTKSRATQGV 250

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
            +  V++ N  G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+
Sbjct: 251 ISIKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAE 308

Query: 888 DERVVSVERIRESEIVDEAESTE 910
           DE VV ++R+ E    +E ++ +
Sbjct: 309 DENVVGLQRVAEPVDDEELDAID 331



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 6/123 (4%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
            N ++   ++L  +E  ++T+S +G+ K     D+    R GKG  A  + + + I  L 
Sbjct: 2   ANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL- 60

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRE 899
                N +D I+  S +G L  + V ++  ASR  +G   V +     +ER+ ++  +RE
Sbjct: 61  --LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVRE 118

Query: 900 SEI 902
            E 
Sbjct: 119 YEE 121



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 124 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 181

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 182 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 232

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 233 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 291

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 292 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 351

Query: 775 LKNDSS 780
             +   
Sbjct: 352 ADDADE 357


>gi|332180630|gb|AEE16318.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema brennaborense DSM
           12168]
          Length = 648

 Score =  313 bits (802), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 144/576 (25%), Positives = 241/576 (41%), Gaps = 58/576 (10%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
            ++L YA  VI  RAIPD+ DGLKPV RRIL  + ++    + K+ K A + G+ M KYH
Sbjct: 10  KNFLEYASYVIRDRAIPDIEDGLKPVQRRILHTLFEVD---DGKFNKVANVVGQCM-KYH 65

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDD 145
           PHG+A+I  AL  +A     + L IE QGNFG++  GD  +A RY ECRL+  A  +L  
Sbjct: 66  PHGDASIGGALVVLA----NKELFIEKQGNFGNLYTGDGASAARYIECRLKPLARDVLY- 120

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
                  + P+YDG  +EPVV  A+ P  L+ G  GIAVGM+TNI +HN+ EV+   +A 
Sbjct: 121 -NPAITQYVPSYDGRNKEPVVFRAKLPIALILGAEGIAVGMSTNILSHNVREVIQAEIAC 179

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           +      L         PD  TG +I       + Y  G G I  R             +
Sbjct: 180 LKGEKFALY--------PDCFTGGLID-----VSDYQDGLGKITTRAKLDTSDPK----R 222

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IVV E+P+  N   + E I +  +  ++   +     +D+    + I+L+RG  A+ +++
Sbjct: 223 IVVRELPFGSNSERLTESIVKAAKNGKLKVASVTDYTADK--VEIEIKLQRGVYAEDVVS 280

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY +T  +   S N++ +    P+  T+  +++        V+    +    +  D+ H
Sbjct: 281 ALYAFTECEQSISCNLLVIRDNMPQVMTVSDVIRYHAEKLVAVLKDELELERAQLIDKLH 340

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +     I +   + + + I          + ++                        ++ 
Sbjct: 341 LRTLERIFIE--ERIYKRIEEMKTEAAVSKAVVTGFEP-----------------FRAEL 381

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              +SE     +L++ + R++    +  R E+ ++   +KE   +L + +       +  
Sbjct: 382 IRAVSEDDVAHLLKIPIRRISLYDINKNRQEVQAINKRLKEIEKLLKNLTAYAVSWLEGT 441

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           L+  D   T RRT+I +       E       +    S  GY+         A   G + 
Sbjct: 442 LAKLDVETTARRTQIKKFSAVDVKEVVKRDIPLRYDASA-GYLGT-------AVSAGTEW 493

Query: 566 RSGVVMRDEDFVTDL-FIVSTHTSVLFFSSLGFVYK 600
                     F+               F   G  Y 
Sbjct: 494 FKVTPYDRVLFIRKSGIYTVCDVPDKLFVDTGMWYC 529


>gi|330837756|ref|YP_004412397.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
 gi|329749659|gb|AEC03015.1| DNA topoisomerase IV subunit A [Spirochaeta coccoides DSM 17374]
          Length = 667

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 167/714 (23%), Positives = 270/714 (37%), Gaps = 94/714 (13%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
               +++YL YA  VI  RAIPD+ DGLKPV RRI+  + +M    + K+ K A + G  
Sbjct: 5   ETIYRHNYLEYASYVIKERAIPDVVDGLKPVQRRIIHTLFEMD---DGKFHKVANVVGHS 61

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAAH 140
           M +YHPHG+A+IY+AL  MA ++ L    IE QGNFG+ + GD  AA RY ECR+   A 
Sbjct: 62  M-RYHPHGDASIYEALVNMA-NFDL---FIERQGNFGNALTGDRAAAGRYIECRIFPFAK 116

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +L     +  ++  +YDG  +EPV   A+ P VL+ G  GIAVGM+T +  HN  EV+D
Sbjct: 117 RVLY--NPELTEYVDSYDGRNREPVAFPAKIPVVLIQGAEGIAVGMSTKMLPHNAIEVLD 174

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
                       +      +  PD PTG ++         Y  G GSI +R         
Sbjct: 175 AMK--------SVLKGESFMLFPDLPTGGILD-----VQEYGDGTGSISVRAKLDTSDPK 221

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
               +IV+TE+PY V   AM+E I    R+ R+   A     SD+    V   L RG  +
Sbjct: 222 ----RIVITELPYGVTSEAMIESIEAAARKGRLKVAAINDYTSDKANIEVC--LARGTYS 275

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             I + LY +TS +   SVN + +    PE   +  I++  V    +V+    +      
Sbjct: 276 KDIEDALYAHTSCEQKISVNALVIKDNMPEIMPVSAIVRFHVRQLLDVLKAELELEKGHL 335

Query: 381 RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
            D  H      I V   + + + I    + +     ++                      
Sbjct: 336 FDTLHARTLERIFVE--ERIYKRIEQKRSADAVEAAVVSGFEP----------------- 376

Query: 441 IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
            GS+    L       +L++ + R++    +  R E+ ++  ++K+    L   S L   
Sbjct: 377 YGSELIRPLVHDDVERLLKIPIRRISLFDIEKNRAEIENIHEKLKDIEWKL---SHLTDY 433

Query: 501 IKQELLSVKDELDTP---RRTRIVEGLLDM---------------------------EDE 530
               L  +K  L      RR+ I +  L                                
Sbjct: 434 ALGYLDELKTLLGVKEHARRSSIKQFELVDAKSVAQRDLTLRYDPKTGYLGYDIKTGNAM 493

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
             +   D ++ +   G              +G +        +   +    I     S  
Sbjct: 494 AMVSLYDRLLLILKDGTYFVQDAPDKIFVGKGLQYCGYADKDELANIVFTTIYQDKDSKA 553

Query: 591 FFSSLGFVYKEKVWR----LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            F     + +  + +    LP GS +    +      L    + +  +   E+   +++ 
Sbjct: 554 LFIKRCRITQFILDKKYALLPEGSYKLLKLSTFLYADLTAKYKPSRGIKILEETFHFSDF 613

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR------DEILSVETCTQEN 694
            +  A   G   R    D   +      A            DE     +   E+
Sbjct: 614 LIKGARSQGV--RLSTKDIESLRIQRMEAAPPPENVPELFEDEPEVASSDVDED 665


>gi|226321135|ref|ZP_03796676.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
 gi|226233427|gb|EEH32167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 29805]
          Length = 626

 Score =  313 bits (802), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 142/658 (21%), Positives = 269/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L    +   E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFSKTLEQIFI----------EKKIYKLLETISKEENILSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRHKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKEHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V      +  +S   ++    +    
Sbjct: 490 FIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYDIN-NSKEQIFSIIYFNRLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +   +    +V F+T    V+R ++ +F+
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFSLNPE--FVEFSTNKDIVKRIEIDNFM 604


>gi|311350453|gb|ADP92423.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|161511951|emb|CAP45395.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 164

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/145 (62%), Positives = 113/145 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 8   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 67

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 68  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 127

Query: 165 VVLCARYPNVLVNGGGGIAVGMATN 189
            V+  + PN+LVNG  GIAVGMATN
Sbjct: 128 DVMPTKIPNLLVNGSSGIAVGMATN 152


>gi|327179192|gb|AEA30139.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 150

 Score =  313 bits (801), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 91/150 (60%), Positives = 114/150 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           PN+LVNG  GIAVGMATNIP HNL EV+  
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHNLTEVIQR 150


>gi|36988470|gb|AAQ87913.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 145

 Score =  312 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 85/145 (58%), Positives = 114/145 (78%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PN
Sbjct: 61  IVRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGG 181
           YDG+   P V+  + P +LVNG  G
Sbjct: 121 YDGTEMIPAVMPTKVPTLLVNGSSG 145


>gi|311350429|gb|ADP92412.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350445|gb|ADP92419.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|192382658|gb|ACF04350.1| GyrA [Neisseria lactamica]
          Length = 148

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 116/148 (78%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ SYL YA++VI+GR +PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GK
Sbjct: 1   MRKSYLDYAMSVIVGRELPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L 
Sbjct: 61  YHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLA 120

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           D+ ++TV+F PNYDGS  EP+VL  R+P
Sbjct: 121 DIEEETVNFGPNYDGSEHEPLVLPTRFP 148


>gi|15594381|ref|NP_212169.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi B31]
 gi|195941775|ref|ZP_03087157.1| DNA topoisomerase IV subunit A [Borrelia burgdorferi 80a]
 gi|216264420|ref|ZP_03436412.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218249341|ref|YP_002374569.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223889128|ref|ZP_03623717.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225549222|ref|ZP_03770195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226322050|ref|ZP_03797575.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|3914263|sp|O51066|PARC_BORBU RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|2687910|gb|AAC66419.1| DNA topoisomerase IV (parC) [Borrelia burgdorferi B31]
 gi|215980893|gb|EEC21700.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 156a]
 gi|218164529|gb|ACK74590.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi ZS7]
 gi|223885377|gb|EEF56478.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 64b]
 gi|225370080|gb|EEG99520.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 94a]
 gi|226232640|gb|EEH31394.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi Bol26]
 gi|312149750|gb|ADQ29821.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi N40]
          Length = 626

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 142/658 (21%), Positives = 269/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENILSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRHKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T+I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V      +  +S   ++    +    
Sbjct: 490 FIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYDIN-NSKEQIFSIIYFNRLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +   +    +V F+T    V+R ++ +F+
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFSLNPE--FVEFSTNKDIVKRIEIDNFM 604


>gi|238810516|dbj|BAH70232.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810518|dbj|BAH70233.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810520|dbj|BAH70234.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|108937148|gb|ABG23386.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937150|gb|ABG23387.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937152|gb|ABG23388.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937154|gb|ABG23389.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937156|gb|ABG23390.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|108937158|gb|ABG23391.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876161|gb|ABK30940.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 115/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|312147811|gb|ADQ30470.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi JD1]
          Length = 626

 Score =  312 bits (799), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 142/658 (21%), Positives = 268/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENILSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRHKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKEHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V      +  +S   ++    +    
Sbjct: 490 FIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYDIN-NSKEQIFSIIYFNRLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +   +    +V F+T    V+R ++ +F+
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFSLNPE--FVEFSTNKDIVKRIEIDNFM 604


>gi|239737043|gb|ACS13101.1| ParC [Pseudomonas putida]
          Length = 142

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 111/142 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M ++G + NK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMSELGNDCNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+
Sbjct: 61  YLLVDGQGNFGSVDGDNAAAMRYTEVRMAKLAHELLADLHKETVDWVPNYDGTEQIPAVM 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             R PN+LVNG  GIAVGMATN
Sbjct: 121 PTRIPNLLVNGSSGIAVGMATN 142


>gi|117654327|gb|ABK55594.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 203

 Score =  312 bits (798), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 119/203 (58%), Positives = 162/203 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVREKR 292
           E+ YQVNKA ++EKIA+LV +K+
Sbjct: 181 ELXYQVNKAKLIEKIADLVXDKK 203


>gi|224531518|ref|ZP_03672150.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
 gi|224510983|gb|EEF81389.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           valaisiana VS116]
          Length = 626

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 144/657 (21%), Positives = 270/657 (41%), Gaps = 64/657 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ GG GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGGEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGETYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++++I   
Sbjct: 325 --MELELQRSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVNIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             +     +  + +     +L++ + +++    D        + I  KE   + SS S +
Sbjct: 373 VLSYKESFSREVFKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSVNSSISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T I         E       + + +       S  G  
Sbjct: 430 RGYSINFIDLLLAKYSKEHQRKTEISLIKSKSVKEIATKNMKVYLNLAEGFVGTSLFGGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V         +S   ++         
Sbjct: 490 FIGNASYYDKILIFRENSYVLKNIEDKAFIDKKNVCALVYD-VNNSKEQIFSIIYLNKLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                +   +   ++    E +     F +     +  +V F+T    V+R ++++F
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFS--LSPKFVEFSTNKDIVKRIEITNF 603


>gi|193735114|gb|ACF20066.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735120|gb|ACF20069.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735126|gb|ACF20072.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  311 bits (797), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYG 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|238810544|dbj|BAH70246.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810546|dbj|BAH70247.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810548|dbj|BAH70248.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810550|dbj|BAH70249.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 119/154 (77%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|221217415|ref|ZP_03588886.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
 gi|221192693|gb|EEE18909.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 72a]
          Length = 626

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 142/658 (21%), Positives = 269/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRHKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T+I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V      +  +S   ++    +    
Sbjct: 490 FIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYDIN-NSKEQIFSIIYFNRLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +   +    +V F+T    V+R ++ +F+
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFSLNPE--FVEFSTNKDIVKRIEIDNFM 604


>gi|224533950|ref|ZP_03674535.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225549759|ref|ZP_03770724.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
 gi|224512953|gb|EEF83319.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi CA-11.2a]
 gi|225369719|gb|EEG99167.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           burgdorferi 118a]
          Length = 626

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 142/658 (21%), Positives = 269/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRCKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T+I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNMKVYLNLAEGFAGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V      +  +S   ++    +    
Sbjct: 490 FIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYDIN-NSKEQIFSIIYFNRLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +   +    +V F+T    V+R ++ +F+
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFSLNPE--FVEFSTNKDIVKRIEIDNFM 604


>gi|116048067|gb|ABJ53249.1| GyrA [Pseudomonas andersonii]
          Length = 139

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/139 (63%), Positives = 110/139 (79%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR 
Sbjct: 1   LKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P V+ 
Sbjct: 61  LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLDKETVDWVPNYDGTEQIPAVMP 120

Query: 169 ARYPNVLVNGGGGIAVGMA 187
            + PN+L+NG  GIAVGMA
Sbjct: 121 TKVPNLLINGSSGIAVGMA 139


>gi|238810552|dbj|BAH70250.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810554|dbj|BAH70251.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810556|dbj|BAH70252.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810558|dbj|BAH70253.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810560|dbj|BAH70254.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810562|dbj|BAH70255.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|193735122|gb|ACF20070.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  311 bits (796), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYQ 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|219684816|ref|ZP_03539758.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
 gi|219671761|gb|EED28816.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii PBr]
          Length = 626

 Score =  310 bits (795), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 140/660 (21%), Positives = 263/660 (39%), Gaps = 68/660 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILSAVKSELLGETYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                                E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQRNKIFEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   + S+ S +
Sbjct: 373 VLKYKESFSREVFKEDVENLLKIPIRKISLFDIDK---NSKDVKILNKELKSVNSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   D  R+T I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKDHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFV--TDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                S Y       K    +   ++             +      +S   ++       
Sbjct: 490 FIGNASYYDKILVFRKNSYVLKNIEDKAFIDKKNICALVYDIN---NSKEQIFSIIYLNK 546

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                  +   +   ++    E +     F +     N  +V F+T    V+R ++++F+
Sbjct: 547 LDNFYYIKRFKIDKFITDKVYEFLGENDEFVDFS--LNPQFVEFSTNKDIVKRIEIANFM 604


>gi|224534930|ref|ZP_03675499.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
 gi|224513870|gb|EEF84195.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           spielmanii A14S]
          Length = 626

 Score =  310 bits (795), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 142/659 (21%), Positives = 265/659 (40%), Gaps = 68/659 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVRSELLGETYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++V+        
Sbjct: 272 VYASEVIEKLYHYTNCQVSISVNLLLLSERYPVVYTIKDLIKFHAAHLQKVLK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKFLETISKEENIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 ILRCKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELRTINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   D  R+T I         E       + + +       S     
Sbjct: 430 KGYSINFIDLLLAKYSKDHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFV--TDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                S Y       K    +   ++             +      +S   ++       
Sbjct: 490 FIGSASYYDKVLVFRKNNYVLKNIEDKAFIDKKNICALVYDIN---NSKEQIFSIIYLNK 546

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
                  +   +   ++    E +     F +     +  +V F+T    ++R ++++F
Sbjct: 547 LDNFYYVKRFKIDKFITDKVYEFLGENDEFVDFS--LSPKFVEFSTNKDIIKRIEITNF 603


>gi|311350421|gb|ADP92408.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350427|gb|ADP92411.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350433|gb|ADP92414.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350435|gb|ADP92415.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350437|gb|ADP92416.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350439|gb|ADP92417.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350442|gb|ADP92418.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350449|gb|ADP92421.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350451|gb|ADP92422.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350455|gb|ADP92424.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|238810522|dbj|BAH70235.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810524|dbj|BAH70236.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810526|dbj|BAH70237.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810528|dbj|BAH70238.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810530|dbj|BAH70239.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810532|dbj|BAH70240.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810534|dbj|BAH70241.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810536|dbj|BAH70242.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810538|dbj|BAH70243.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810540|dbj|BAH70244.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810542|dbj|BAH70245.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  310 bits (794), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 95/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|261599201|gb|ACX85663.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 85/153 (55%), Positives = 111/153 (72%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ R
Sbjct: 7   RALPDIRDGLKPVQRRILYSMNKYGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVR 66

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           M+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D 
Sbjct: 67  MSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDD 126

Query: 160 SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
           + +EP VL A +PN+LVNG  GI+ G AT IP 
Sbjct: 127 TEKEPTVLPAAFPNLLVNGATGISAGYATAIPP 159


>gi|225552369|ref|ZP_03773309.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
 gi|225371367|gb|EEH00797.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia sp.
           SV1]
          Length = 626

 Score =  310 bits (794), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 142/658 (21%), Positives = 267/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGESYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K   A  ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHAAHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           + + +     S   +++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKRIYKLLETISKEGNIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRYKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKGINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   +  R+T+I         E       + + +       S     
Sbjct: 430 KGYSINFIDLLLAKYSKEHQRKTKISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       +    +   ++    D   V      +  +S   ++    +    
Sbjct: 490 FIGNASYYDKILVFRENSYVLKNIEDKTFIDKKNVCALVYDIN-NSKEQIFSIIYFNRLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +   +    +V F+T    V+R ++ +F+
Sbjct: 549 NFYYVKRFKIDKFITDKVYEFLGENDEFVDFSLNPE--FVEFSTNKDIVKRIEIDNFM 604


>gi|257456947|ref|ZP_05622128.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
 gi|257445656|gb|EEV20718.1| DNA gyrase subunit A [Treponema vincentii ATCC 35580]
          Length = 642

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 129/516 (25%), Positives = 229/516 (44%), Gaps = 49/516 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +      ++L YA  VI  RAIPD+ DGLKPV RRIL  + +M    + K+ K A + G 
Sbjct: 4   VESLFNTNFLEYASYVIRDRAIPDVEDGLKPVQRRILHSLFEMD---DGKFHKVANVVGY 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+ + A
Sbjct: 61  CM-KYHPHGDASIGNALTVLA----NKSLFIDKQGNFGNLFTGDEASAPRYIECRITEFA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +L         + P+YDG  +EPVV  A+ P VL+ G  GIAVGM+T I  HN+ E++
Sbjct: 116 KDIL--FNPHITRYVPSYDGRNKEPVVFRAKLPVVLLIGAEGIAVGMSTKILPHNIREII 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +     +      L         PDF TG +I       + Y  G+G +++R        
Sbjct: 174 EAEKDCLSGKSFTLY--------PDFQTGGLID-----VSEYQDGKGKVLVRAKLDTSDD 220

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                +IV+ E+P+     +++  I    +  ++  I+++ D +  Q   + ++L RG  
Sbjct: 221 K----RIVIRELPFGSTTESLIASIESASKSGKVK-ISEINDYTAEQ-VEIELKLPRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           A  +++ LY +T  +   S N++ +    P + ++  ++K        ++     Y    
Sbjct: 275 ASDVVDALYAFTDCEQSISCNLLVIQDNLPVQTSVTEVIKTHAKQLTALLKDELMYEQEM 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             DR H+     I +   + + + I      E+  + +++                    
Sbjct: 335 LTDRLHLRTLERIFIE--ERIYKKIETMKTAESVIKAVIKGFEP---------------- 376

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
              ++    ++E     +L++ + R++       R E+  +   +KE   +L +  +   
Sbjct: 377 -FKAELIREVTEEDVDRLLKIPIRRISLYDIQKNRAEVQEISARLKEIARLLKNLKKYAL 435

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            +   +L+      T R+T I         E     
Sbjct: 436 SVLDGILAKLPPEVTARKTEITGFTKVDVKEAVNRD 471


>gi|193735116|gb|ACF20067.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  310 bits (794), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+++ Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSSAYA 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|219685308|ref|ZP_03540127.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
 gi|219673081|gb|EED30101.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           garinii Far04]
          Length = 626

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 139/660 (21%), Positives = 261/660 (39%), Gaps = 68/660 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRSILKDNFLQYSSYVIKDRAIASIVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLLTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILSAVKSELLGETYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                                E + I           +++ +     S   +++ +I   
Sbjct: 325 --MELELQRNKIFEKIFYKTLEQIFI----------EKKIYKLLETISKEGNIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   + S+ S +
Sbjct: 373 VLKYKESFSREVLKEDVENLLKIPIRKISLFDIDK---NSKDIKILNKELKSVNSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +      R+T I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLSKYSKYHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFV--TDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                S Y       K    +   ++             +      +S   ++       
Sbjct: 490 FIGNASYYDKILVFRKNSYVLKNIEDKAFIDKKNICALVYDIN---NSKEQIFSIIYLNK 546

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                  +   +   ++    E +     F +     N  +V F+T    V+R ++++F+
Sbjct: 547 LDNFYYIKRFKIDKFITDKVYEFLGENDEFVDFS--LNPQFVEFSTNKNIVKRIEIANFM 604


>gi|36988462|gb|AAQ87912.1| DNA gyrase subunit A [Aeromonas caviae]
          Length = 144

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 84/144 (58%), Positives = 113/144 (78%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           +GRA+PD+RDGLKPVHRR+L+ M ++G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ +
Sbjct: 1   VGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYNTI 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RMAQD+S+R +L++GQGNFGSVDGD  AA RYTE R+ + +H LL DL K+TVD+ PNY
Sbjct: 61  VRMAQDFSMRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARISHELLADLDKETVDWVPNY 120

Query: 158 DGSFQEPVVLCARYPNVLVNGGGG 181
           DG+   P V+  + P +LVNG  G
Sbjct: 121 DGTEMIPAVMPTKVPTLLVNGSSG 144


>gi|193735112|gb|ACF20065.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG++  Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735124|gb|ACF20071.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735134|gb|ACF20076.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  310 bits (793), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+ + Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDNSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|238810510|dbj|BAH70229.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810512|dbj|BAH70230.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810514|dbj|BAH70231.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 118/154 (76%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|261599193|gb|ACX85659.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  310 bits (793), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 35  NVIL-GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           +VI+  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++I
Sbjct: 2   SVIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSI 61

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           YDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV  
Sbjct: 62  YDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPL 121

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             N+D + +EP VL A +PN+LVNG  GI+ G AT  P 
Sbjct: 122 AWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATQFPP 160


>gi|311350423|gb|ADP92409.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350425|gb|ADP92410.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350431|gb|ADP92413.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
 gi|311350447|gb|ADP92420.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 144

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 112/144 (77%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + R
Sbjct: 1   RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVR 60

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           MAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 120

Query: 160 SFQEPVVLCARYPNVLVNGGGGIA 183
           + + P V+  + PN+LVNG  GIA
Sbjct: 121 TEKIPDVMPTKIPNLLVNGSSGIA 144


>gi|111114858|ref|YP_709476.1| DNA topoisomerase IV subunit A [Borrelia afzelii PKo]
 gi|216264054|ref|ZP_03436048.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
 gi|110890132|gb|ABH01300.1| DNA topoisomerase IV [Borrelia afzelii PKo]
 gi|215980098|gb|EEC20920.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Borrelia
           afzelii ACA-1]
          Length = 626

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 140/658 (21%), Positives = 266/658 (40%), Gaps = 64/658 (9%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTLLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++   + +     D+         PDFPTG ++       N YA G G +++R      
Sbjct: 171 ILNAVKSELLGETYDIY--------PDFPTGGIVD-----VNEYADGNGKVLVRAKIETI 217

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                   IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 218 DEK----TIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++V+        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKVLK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   I S+ S +
Sbjct: 373 VLRCKESFSREVLKEDIENLLKIPIRKISLFDIDK---NSKDIKILNKELKIINSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
                  +  +  +   +  R+T I         E       + + +       S     
Sbjct: 430 KEYSINFIDLLLAKYSKEHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
                S Y       K    +   ++    D   +      +  +S   ++         
Sbjct: 490 FIGNASYYDKVLVFRKNSYVLKNIEDKAFIDKKNICVLVYDIN-NSKEQIFSIIYLNKLD 548

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                +   +   ++    E +     F +     +  +V F+T    ++R ++++F+
Sbjct: 549 NFYYVKRFKIDKFIADKVYEFLGDNDEFVDFS--LSPKFVEFSTNKDIIKRIEIANFM 604


>gi|238810566|dbj|BAH70257.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810568|dbj|BAH70258.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810570|dbj|BAH70259.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810572|dbj|BAH70260.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810574|dbj|BAH70261.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810576|dbj|BAH70262.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810578|dbj|BAH70263.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810580|dbj|BAH70264.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810582|dbj|BAH70265.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810584|dbj|BAH70266.1| DNA gyrase subunit A [Mannheimia haemolytica]
 gi|238810586|dbj|BAH70267.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  310 bits (793), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 117/154 (75%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|51598298|ref|YP_072486.1| DNA topoisomerase IV subunit A [Borrelia garinii PBi]
 gi|51572869|gb|AAU06894.1| DNA topoisomerase IV [Borrelia garinii PBi]
          Length = 626

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 142/660 (21%), Positives = 267/660 (40%), Gaps = 68/660 (10%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRSVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQK 137
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++  GDP +A RY ECRL  
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L    K+   +  +YDG   EP++  A+ P +L+ G  GIAVGMA  I  HN  E
Sbjct: 113 LAFDVLY--SKEITVYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++    + +     D+         PDFPTG ++       N YA G G I++R      
Sbjct: 171 ILSAVKSELLGETYDIY--------PDFPTGGIVD-----VNEYADGNGKILVRAKIE-- 215

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
             + D + IV+ E+P+     +++  I + +R+  I   +   ++   +   + + L RG
Sbjct: 216 --TLDEKTIVIRELPFGETTESLISSIEKAIRKNYIKVSS--INDFTAENVAIELSLPRG 271

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  ++ +LY YT+ Q   SVN++ L+   P  +T+  ++K      ++++        
Sbjct: 272 VYASEVIEKLYHYTNCQISISVNLLLLSERYPVVYTIKDLIKFHADHLQKILK------- 324

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                       L        E + I           +++ +     S  ++++ +I   
Sbjct: 325 --MELELQKSKILEKIFYKTLEQIFI----------EKKIYKLLETISKEENIVSIILSE 372

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                   +  + +     +L++ + +++    D        + I  KE   + S+ S +
Sbjct: 373 VLKYKESFSREVLKEDVENLLKIPIRKISLFDIDK---NFKDIKILNKELKSVNSNISSI 429

Query: 498 LGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTV-------SHLGYV 548
            G     +  +  +   D  R+T I         E       + + +       S     
Sbjct: 430 RGYSINFIDLLLAKYSKDHQRKTEISLIKSKNVKEIATKNMKVYLNLAEGFVGTSLFDGE 489

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFV--TDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
                S Y       +    +   ++             +      +S   ++       
Sbjct: 490 FIGNASYYDKILIFRENSYVLKNIEDKAFIDKKNICALVYDIN---NSKEQIFSIIYLNK 546

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI 666
                  +   +   ++    E +     F +     N  +V F+T    V+R ++++F+
Sbjct: 547 LDKFYYIKRFKIDKFITDKVYEFLGENDEFVDFS--LNPKFVEFSTNKDIVKRIEIANFM 604


>gi|117654339|gb|ABK55600.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  309 bits (792), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 120/201 (59%), Positives = 161/201 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVRE 290
           E+PYQVN A ++EKIA+LVR+
Sbjct: 181 ELPYQVNXAKLIEKIADLVRD 201


>gi|116876157|gb|ABK30938.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876159|gb|ABK30939.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|116876163|gb|ABK30941.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735118|gb|ACF20068.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/156 (60%), Positives = 115/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHGN++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGNSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|193735128|gb|ACF20073.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 113/156 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG++  Y 
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDSPAYQ 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|296253512|gb|ADH04217.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 89/142 (62%), Positives = 108/142 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG++A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDSAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + P +LVNG  GIAVGMAT 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATK 142


>gi|108937160|gb|ABG23392.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
 gi|193735130|gb|ACF20074.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  309 bits (791), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPHG+ + Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHGDRSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|33338054|gb|AAQ13649.1|AF173982_1 DNA gyrase [Pasteurella multocida]
          Length = 139

 Score =  309 bits (790), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/139 (63%), Positives = 106/139 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+LF M + G  +NK Y K ARI G+V+GKYHPHG++A+Y  L RMAQ +SL
Sbjct: 1   DGLKPVHRRVLFAMHEGGNAYNKPYRKSARIVGDVIGKYHPHGDSAVYGTLVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE R+ K AH LL DL K+TV+F PNYDGS Q P V
Sbjct: 61  RYMLVDGQGNFGSIDGDAAAAMRYTEARMTKIAHELLADLDKETVNFVPNYDGSEQIPEV 120

Query: 167 LCARYPNVLVNGGGGIAVG 185
           L  + P +LVNG  GIAVG
Sbjct: 121 LPTKVPALLVNGSSGIAVG 139


>gi|68010496|ref|XP_670772.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486339|emb|CAI03944.1| hypothetical protein PB301451.00.0 [Plasmodium berghei]
          Length = 267

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 111/253 (43%), Positives = 161/253 (63%), Gaps = 4/253 (1%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK-YVKCAR 76
            V I + +  S+L+YA  +IL R + D RDGLK V RRI++ M ++   ++KK Y KCAR
Sbjct: 6   DVEICELLSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGYDKKSYKKCAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I GEV+GKYHPHG+ ++YDAL R+AQ      LLI G GNFGSV+    AA RYTE R+ 
Sbjct: 66  IVGEVIGKYHPHGDKSVYDALIRLAQKHHNNNLLINGYGNFGSVEY-NAAAMRYTEARIS 124

Query: 137 KAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              +  LLD++  + +D+  N+DG+ +EP VLC++ P +L+NG  GIAV + TNIP+HN+
Sbjct: 125 DFCYDVLLDEINDENIDYIKNFDGNEKEPKVLCSKIPLLLINGCSGIAVSILTNIPSHNI 184

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAYATGRGSIVIRGVS 254
            +V++  +  + N  I  D L  II  PDF TG +I+  +  +++ Y TG+G+IVIR   
Sbjct: 185 VDVINASINFLINEKITHDELFNIIXAPDFSTGGIIIANKDTLRDIYHTGKGNIVIRSNR 244

Query: 255 HIEKTSGDREQIV 267
             E    ++  I 
Sbjct: 245 FYEYAHKNKTDIH 257


>gi|261599199|gb|ACX85662.1| ParC [Streptococcus oralis]
          Length = 161

 Score =  308 bits (789), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 111/154 (72%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ 
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 67  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            + +EP VL A +PN+LVNG  GI+ G AT IP 
Sbjct: 127 DTEKEPTVLPAAFPNLLVNGSTGISAGYATEIPP 160


>gi|17887472|gb|AAL40896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 149

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 90/149 (60%), Positives = 115/149 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           PN+LVNG  GIAVGMATNIP H+L EV++
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHDLTEVIN 149


>gi|117654337|gb|ABK55599.1| DNA gyrase subunit A [Bacillus vallismortis]
          Length = 201

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/201 (59%), Positives = 159/201 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKEXIIVT 180

Query: 270 EIPYQVNKAAMLEKIAELVRE 290
           E+PYQVN A ++EKIA+LV +
Sbjct: 181 ELPYQVNXAKLIEKIADLVXD 201


>gi|193735132|gb|ACF20075.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 156

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 92/156 (58%), Positives = 114/156 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHPH +++ Y+
Sbjct: 1   VVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHPHCDSSAYE 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ + TVDF P
Sbjct: 61  AMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEINQGTVDFMP 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           NYDG+F EP+ L AR P VL+NG  GIAVGMAT IP
Sbjct: 121 NYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIP 156


>gi|61651648|dbj|BAD91163.1| GyrA protein [Campylobacter fetus subsp. fetus]
          Length = 142

 Score =  307 bits (787), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 91/142 (64%), Positives = 106/142 (74%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQ++S+R+  +
Sbjct: 1   VHRRILYAMNDLGVGSRSPYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQNFSMRVPAV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGD  AA RYTE R+   A  LL DL KDTVDF PNYD S  EP VL AR 
Sbjct: 61  DGQGNFGSVDGDGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARV 120

Query: 172 PNVLVNGGGGIAVGMATNIPTH 193
           PN+L+NG  GIAVGMATNIP H
Sbjct: 121 PNLLLNGSSGIAVGMATNIPPH 142


>gi|161511949|emb|CAP45394.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 151

 Score =  307 bits (787), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 89/145 (61%), Positives = 112/145 (77%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIP 120

Query: 165 VVLCARYPNVLVNGGGGIAVGMATN 189
            V+  + PN+LVNG  GIAVGMAT 
Sbjct: 121 DVMPTKIPNLLVNGSSGIAVGMATK 145


>gi|238810564|dbj|BAH70256.1| DNA gyrase subunit A [Mannheimia haemolytica]
          Length = 156

 Score =  307 bits (786), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 94/154 (61%), Positives = 117/154 (75%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  VSI DE++ SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M Q    +NK 
Sbjct: 3   ELAKDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           +VK AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD PAA RY
Sbjct: 63  HVKSARVVGDVIGKYHPHGDFAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRY 122

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           TE R+QK    LL DL K+TVDF PNYDG    P
Sbjct: 123 TEVRMQKITQELLTDLDKETVDFSPNYDGKEMIP 156


>gi|117654335|gb|ABK55598.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 198

 Score =  307 bits (786), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 116/198 (58%), Positives = 156/198 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKAAMLEKIAEL 287
           E+P QVNKA ++E IA+L
Sbjct: 181 ELPXQVNKAKLIEXIADL 198


>gi|313192105|emb|CBX19912.1| gyrase A [Clostridium perfringens]
          Length = 263

 Score =  307 bits (785), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 144/263 (54%), Positives = 200/263 (76%), Gaps = 1/263 (0%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMA
Sbjct: 1   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G 
Sbjct: 61  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGR 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G
Sbjct: 121 IVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 179

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++
Sbjct: 180 MRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKD 239

Query: 368 VVVRRTKYLLNKARDRAHVLVGL 390
           V+ RRT++ LNKA++RAH+L GL
Sbjct: 240 VITRRTQFELNKAKERAHILEGL 262


>gi|296253510|gb|ADH04216.1| GyrA [Gallibacterium anatis]
 gi|296253518|gb|ADH04220.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 89/142 (62%), Positives = 108/142 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y+ L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYNTLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + P +LVNG  GIAVGMAT 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATK 142


>gi|261599197|gb|ACX85661.1| ParC [Streptococcus parasanguinis]
          Length = 160

 Score =  307 bits (785), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 83/154 (53%), Positives = 113/154 (73%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           N+D + +EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATD 157


>gi|296253508|gb|ADH04215.1| GyrA [Gallibacterium anatis]
 gi|296253514|gb|ADH04218.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  306 bits (784), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 89/142 (62%), Positives = 107/142 (75%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDFAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + P +LVNG  GIAVGMAT 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATK 142


>gi|153824230|ref|ZP_01976897.1| DNA gyrase subunit A [Vibrio cholerae B33]
 gi|126518247|gb|EAZ75472.1| DNA gyrase subunit A [Vibrio cholerae B33]
          Length = 411

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 136/441 (30%), Positives = 217/441 (49%), Gaps = 84/441 (19%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I   + IL+S  RL+ +I++EL +++      RRT I     D++ E+ I RED+VVT+S
Sbjct: 1   IAALMHILASTERLMEVIREELEAIRAGFSDARRTEITAATHDIDMEELIAREDVVVTLS 60

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK   LS Y AQRRGGKG+S   M++ED++  L + +TH ++L FS+ G  Y+ KV
Sbjct: 61  HEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRGKTYRMKV 120

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           ++LP+ S  ARGK ++N+L L + ERIT I+P  E      + ++  AT  G V++  L 
Sbjct: 121 YQLPLASRTARGKPIVNLLPLEENERITAILPVTEFS---EDKFIFMATGDGTVKKTSLD 177

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA----------- 712
            F  +  +G IA+ L   D ++ V+    E++I+L +K G+ VRF  S            
Sbjct: 178 QFANVRANGLIALNLRDEDSLIGVDITDGESEIMLFSKFGKVVRFKESEETAVVDENGQP 237

Query: 713 --------------IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
                         +R   GR + GVRG+ L                             
Sbjct: 238 VLDENGQPEIKFKGVRPM-GRTAAGVRGMKL----------------------------- 267

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                    +  +     +   E  +LTV+E G+GKRTS  ++ 
Sbjct: 268 ------------------------ADGDQVVSLIVPKTEGDVLTVTENGYGKRTSLSEYP 303

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK 878
              R  +G+ +  VS+ N  G++V    V + D+ +++++ GTL+R  V E+    R T+
Sbjct: 304 TKGRGTQGVVSIKVSERN--GSVVGAVQVAEGDEFMMITNAGTLVRTRVAEVSQVGRNTQ 361

Query: 879 GVVIFSTAKDERVVSVERIRE 899
           GV +  T++ E VV ++RI E
Sbjct: 362 GVTLIRTSEGESVVGLQRIDE 382



 Score = 54.8 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           V+  T++G  +R  LS++    R  +  + +        ++      + ++ ++ T  G 
Sbjct: 285 VLTVTENGYGKRTSLSEYPTKGRGTQGVVSIKVSERNGSVVGAVQVAEGDEFMMITNAGT 344

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  ++ +    GRN+ GV  I  ++G+ V+ +  +   +             +     
Sbjct: 345 LVRTRVAEV-SQVGRNTQGVTLIRTSEGESVVGLQRIDEIEESELPEGEEALVENDAPVA 403

Query: 765 ISGDTEEI 772
              D E+ 
Sbjct: 404 QDDDGEQE 411


>gi|115380010|ref|ZP_01467060.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
 gi|115362989|gb|EAU62174.1| hypothetical protein STIAU_4480 [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 196/638 (30%), Positives = 309/638 (48%), Gaps = 52/638 (8%)

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
             EP+V+ +R P +L+NG  GIAVGMATNIP H+LGE+ D   A+I+N ++ +  LM+ +
Sbjct: 1   LSEPIVIPSRLPQLLMNGTTGIAVGMATNIPPHHLGELCDALAALIENGNLAVKDLMKFV 60

Query: 221 RGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
           +GPDFPTG  IL     ++  Y TG+GS+ IRG   +E      +QI++T IPY VNK+ 
Sbjct: 61  KGPDFPTGGQILNSKAELREIYETGQGSVRIRGEYALEDVKKGGQQIIITSIPYTVNKST 120

Query: 280 MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
           ++ KI +LVRE+++  + D+RDES ++  R+V+E KR AS ++++  LY++T LQ+ F V
Sbjct: 121 LVSKIGDLVRERKLPLLLDVRDESTKE-VRIVLEFKRDASPELVMAYLYKHTPLQTNFGV 179

Query: 340 NMVALNGYK------PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           N+  L          P+R  L  IL+ F+ FR EVV +R ++ L + + R H+L G    
Sbjct: 180 NLTCLVPTDNPEVGAPKRLDLKSILQYFLDFRFEVVTKRFQHELGELQKRVHILEGFEKV 239

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
              LDE++RIIR S   + A ++LM R                            L EVQ
Sbjct: 240 YDALDEMIRIIRASEGKQDAAKKLMAR--------------------------FKLDEVQ 273

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             AILE++L +L  L    I+ EL    +E+K    IL  + +L G +K EL  +K   +
Sbjct: 274 VDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKATYN 333

Query: 514 TPRRTRI---VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
             RRTRI       ++  ++  IV ED  V ++  G++KRV         R  K  S   
Sbjct: 334 DKRRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRV---------REVKDPSTTR 384

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           +R+ D V  +   S  ++++ FS+ G  Y  +   +P       G  +  +   + GERI
Sbjct: 385 LREGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPAS--TGYGDPVQKLFKFDDGERI 442

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ-INRSGKIAMKLDSRDEILSVET 689
              +    D        +V  TK G   R  L   ++   RSG+   K    DEI+ V+ 
Sbjct: 443 VGALSL--DSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQP 500

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
             +++ + + T+         + +   AG    GV  I +  GD+V+    V     D  
Sbjct: 501 VGEKDLLAVLTERTYATVCRAAEVNELAG-PGKGVLVIKVEPGDRVMEFLAVAPGQKDAS 559

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISE 787
                 K           +        ++ S +  + E
Sbjct: 560 ITFETQKGRKLTLSPAKYEVTGRGGKGHEMSRKDTVKE 597



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 10/263 (3%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           + F ED    +    V  T+ G ++R +               +L   D +++V   + +
Sbjct: 348 VEFSEDAFIVDEDAHVVLTRDGWIKRVRE-------VKDPSTTRLREGDAVMTVLAGSLK 400

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           ++++L +  G       + +    G      +      G++++    +        + + 
Sbjct: 401 SNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVGALSLDSRLPRPQKLVA 460

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
             K     R  + G  E  T      +  G   E    +   ++  +  ++E+ +     
Sbjct: 461 VTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEKDLLAVLTERTYATVCR 520

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           + +       GKG+    V   + +   +AV P   +  I   + KG  + +   +  + 
Sbjct: 521 AAEVNELAGPGKGVLVIKVEPGDRVMEFLAVAPGQKDASITFETQKGRKLTLSPAKYEVT 580

Query: 874 SRATKGVVIFSTAKDERVVSVER 896
            R  KG      ++ + V  V+R
Sbjct: 581 GRGGKGH---EMSRKDTVKEVQR 600


>gi|37998982|dbj|BAD00061.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 140

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|167861164|gb|ACA05285.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|208972181|gb|ACI32674.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 138

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 85/138 (61%), Positives = 113/138 (81%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           +++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GK
Sbjct: 1   LKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ 
Sbjct: 61  YHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMA 120

Query: 145 DLGKDTVDFRPNYDGSFQ 162
           DL K+TVDF  NYDG+ +
Sbjct: 121 DLEKETVDFVDNYDGTEK 138


>gi|167861162|gb|ACA05284.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 114/148 (77%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HN+ EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|37998992|dbj|BAD00066.1| DNA gyrase subunit A [Streptococcus porcinus]
          Length = 140

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|296253506|gb|ADH04214.1| GyrA [Gallibacterium anatis]
 gi|296253516|gb|ADH04219.1| GyrA [Gallibacterium anatis]
          Length = 144

 Score =  305 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/142 (62%), Positives = 107/142 (75%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+LF M   G ++NK Y K ARI G+V+GKYHPHG+ A+Y  L RMAQ +SLR
Sbjct: 1   GLKPVHRRVLFAMAVGGNDYNKPYRKSARIVGDVIGKYHPHGDYAVYATLVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             L++GQGNFGS+DGD PAA RYTE R+ + AH LL DL K+TVD++PNYDGS   P VL
Sbjct: 61  YPLVDGQGNFGSIDGDSPAAMRYTEARMTQIAHELLADLDKETVDYQPNYDGSEMIPEVL 120

Query: 168 CARYPNVLVNGGGGIAVGMATN 189
             + P +LVNG  GIAVGMAT 
Sbjct: 121 PTKVPALLVNGSSGIAVGMATK 142


>gi|167861154|gb|ACA05280.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|238913907|ref|ZP_04657744.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 338

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 127/371 (34%), Positives = 205/371 (55%), Gaps = 59/371 (15%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           +T+SH GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y
Sbjct: 1   MTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY 60

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++
Sbjct: 61  WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKK 117

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR
Sbjct: 118 TALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GR 176

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GVRGI LA  D+V+S+ I                                       
Sbjct: 177 TATGVRGIKLAGDDKVVSLII--------------------------------------- 197

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                            E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G
Sbjct: 198 --------------PRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--G 241

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E
Sbjct: 242 SVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAE 301

Query: 900 SEIVDEAESTE 910
               +E ++ +
Sbjct: 302 PVDDEELDAID 312



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 105 NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 162

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 163 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 213

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 214 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 272

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 273 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 332

Query: 775 LKNDSS 780
             +   
Sbjct: 333 ADDADE 338


>gi|261599195|gb|ACX85660.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 111/152 (73%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA+ 
Sbjct: 8   ERALPDIRDGLKPVQRRILYSMNKDGNAHDKGYRKSAKSVGNIMGNFHPHGDSSIYDAMV 67

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N+D
Sbjct: 68  RMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWNFD 127

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
            + +EP VL A +PN+LVNG  GI+ G AT+I
Sbjct: 128 DTEKEPTVLPAAFPNLLVNGATGISAGYATDI 159


>gi|37998990|dbj|BAD00065.1| DNA gyrase subunit A [Streptococcus iniae]
          Length = 140

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQENYDGSEREP 140


>gi|37998968|dbj|BAD00054.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998976|dbj|BAD00058.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998978|dbj|BAD00059.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998980|dbj|BAD00060.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998998|dbj|BAD00069.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|62084058|dbj|BAD91436.1| DNA gyrase A subunit [Streptococcus agalactiae]
          Length = 140

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|295394226|gb|ADG03724.1| DNA topoisomerase IV subunit A [Streptococcus mutans]
          Length = 151

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G VMG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R  LIE  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPPAAMRYTEARLSEIADYLLQDIDKNTVAWAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|117654333|gb|ABK55597.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii]
          Length = 196

 Score =  305 bits (780), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 113/195 (57%), Positives = 151/195 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKEXIIVT 180

Query: 270 EIPYQVNKAAMLEKI 284
           E+P QV KA ++E I
Sbjct: 181 ELPXQVXKAKLIEXI 195


>gi|259020306|gb|ACV90437.1| DNA gyrase subunit A [Vibrio cholerae O139]
          Length = 151

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 94/151 (62%), Positives = 118/151 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+L+NG  GI
Sbjct: 61  DSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGI 120

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           AVGMATNIP HNLGEV+DGC+A IDN  I +
Sbjct: 121 AVGMATNIPPHNLGEVIDGCLAYIDNEAITI 151


>gi|37998994|dbj|BAD00067.1| DNA gyrase subunit A [Streptococcus equi subsp. equi]
 gi|37998996|dbj|BAD00068.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus]
          Length = 140

 Score =  304 bits (779), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLK 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDG+ +EP
Sbjct: 121 DINKNTVDFQDNYDGNEREP 140


>gi|284154382|gb|ADB78292.1| DNA gyrase [Bacillus sp. B-51132]
 gi|284154386|gb|ADB78294.1| DNA gyrase [Bacillus sp. B-51134]
 gi|284154392|gb|ADB78297.1| DNA gyrase [Bacillus sp. B-51137]
 gi|284154394|gb|ADB78298.1| DNA gyrase [Bacillus sp. B-51138]
 gi|284154412|gb|ADB78307.1| DNA gyrase [Bacillus sp. B-51148]
 gi|284154418|gb|ADB78310.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154436|gb|ADB78319.1| DNA gyrase [Bacillus sp. B-51161]
 gi|284154440|gb|ADB78321.1| DNA gyrase [Bacillus sp. B-51164]
 gi|284154466|gb|ADB78334.1| DNA gyrase [Bacillus sp. B-51180]
 gi|284154484|gb|ADB78343.1| DNA gyrase [Bacillus sp. B-51190]
 gi|284154488|gb|ADB78345.1| DNA gyrase [Bacillus sp. B-51192]
 gi|284154490|gb|ADB78346.1| DNA gyrase [Bacillus sp. B-51193]
 gi|284154542|gb|ADB78372.1| DNA gyrase [Bacillus sp. B-51220]
          Length = 189

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 118/189 (62%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|167861160|gb|ACA05283.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+   P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTESIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|1296985|emb|CAA64977.1| DNA gyrase subunit A [Sinorhizobium meliloti]
          Length = 148

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/148 (57%), Positives = 109/148 (73%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRI+  M +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S
Sbjct: 1   RDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R  +++GQGNFG++DGD  AA RYTE ++ + A  LL+    D VDFRP Y+   QEP 
Sbjct: 61  QRYPVVDGQGNFGNIDGDNAAAYRYTEAKMTEVAALLLEGSTLDAVDFRPTYNEEDQEPT 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL   +PN+L NG  GIAVGMATNIP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|284154462|gb|ADB78332.1| DNA gyrase [Bacillus sp. B-51178]
 gi|284154472|gb|ADB78337.1| DNA gyrase [Bacillus sp. B-51183]
          Length = 189

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 116/189 (61%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 EITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|42527621|ref|NP_972719.1| DNA topoisomerase IV subunit A [Treponema denticola ATCC 35405]
 gi|41818449|gb|AAS12638.1| topoisomerase IV, A subunit, putative [Treponema denticola ATCC
           35405]
          Length = 703

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 129/518 (24%), Positives = 222/518 (42%), Gaps = 53/518 (10%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I      ++L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G 
Sbjct: 4   IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGH 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M KYHPHG+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+ + A
Sbjct: 61  CM-KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             +         D+  +YDG  +EP+   A+ P +L  G  GIAVGM+T I  HN+ E++
Sbjct: 116 KTIFY--NPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           +   A +      L         PDFPTG +I       + Y  G G +++R        
Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLID-----VSEYEDGLGKVLVRAKLDTSDE 220

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--ELKRG 317
                +IV+ E+P+     +M+  I    +  ++     + + SD  G  V I  +L RG
Sbjct: 221 K----RIVIRELPFGSTTESMINSIEAASKAGKVK----ISEISDYTGENVEIELKLPRG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             +  +++ LY +T  +     N++ +    P + T+  I+K       +++    +Y  
Sbjct: 273 VYSADVVDALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYER 332

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
               +R H+     I +   + + + I      E     +++                  
Sbjct: 333 AMLTERLHLRTLERIFIE--ERIYKKIETMKTAEGVINAVIKGFVP-------------- 376

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                 +    ++E     +L++ + R++    +  R E+  +   +KE   +L +    
Sbjct: 377 ---FKKELIRDVTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAKLLKNLKGY 433

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
              +   + +     +  R+T I         E     
Sbjct: 434 AISVLDGIAAKLPAEEFKRKTEITGFTKVDVKEAVTRD 471


>gi|284154404|gb|ADB78303.1| DNA gyrase [Bacillus licheniformis]
 gi|284154408|gb|ADB78305.1| DNA gyrase [Bacillus licheniformis]
 gi|284154410|gb|ADB78306.1| DNA gyrase [Bacillus licheniformis]
 gi|284154414|gb|ADB78308.1| DNA gyrase [Bacillus licheniformis]
 gi|284154448|gb|ADB78325.1| DNA gyrase [Bacillus licheniformis]
 gi|284154482|gb|ADB78342.1| DNA gyrase [Bacillus licheniformis]
 gi|284154486|gb|ADB78344.1| DNA gyrase [Bacillus licheniformis]
          Length = 189

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 117/189 (61%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV  NP
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKNP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I++T
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIIT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|3411096|gb|AAC31147.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  304 bits (778), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 117/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG++++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|167861158|gb|ACA05282.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  304 bits (777), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 89/148 (60%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GASGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|37998986|dbj|BAD00063.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
 gi|37998988|dbj|BAD00064.1| DNA gyrase subunit A [Streptococcus canis]
          Length = 140

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|9081891|gb|AAF82628.1| topoisomerase II subunit A [Staphylococcus capitis]
          Length = 143

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 90/143 (62%), Positives = 111/143 (77%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IP HNL EV+DG +++  NPDI 
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPDIT 143


>gi|261599191|gb|ACX85658.1| ParC [Streptococcus salivarius]
          Length = 160

 Score =  304 bits (777), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 84/154 (54%), Positives = 114/154 (74%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYD
Sbjct: 4   IIQERALPDIRDGLKPVQRRILYSMNKDGNTYDKGYRKSAKSVGNIMGNFHPHGDSSIYD 63

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ARM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  
Sbjct: 64  AMARMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAW 123

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           N+D + +EP VL A +PN+LVNG  GI+ G AT+
Sbjct: 124 NFDDTEKEPTVLPAAFPNLLVNGATGISAGYATD 157


>gi|295394236|gb|ADG03729.1| DNA topoisomerase IV subunit A [Streptococcus salivarius]
          Length = 151

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 82/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV +  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIDKNTVPWAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|116089891|gb|ABJ55665.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 143

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 109/143 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYGTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKI 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHN 194
           PN+LVNG  GIAVGMATNIP HN
Sbjct: 121 PNLLVNGSSGIAVGMATNIPPHN 143


>gi|3411098|gb|AAC31148.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411100|gb|AAC31149.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  303 bits (776), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG++++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDSSVYGAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|47419988|gb|AAT27346.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  303 bits (776), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 177/582 (30%), Positives = 299/582 (51%), Gaps = 115/582 (19%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  +K + D  R T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIKSKFDVLRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 274

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+++L   E+I  I+P  + +    N  + F TK+G V+R  LS++  I   G  A
Sbjct: 275 KAVVNLINLQADEKIMAIIPTTDFD---ENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKA 331

Query: 676 MKLDSRDEILSVETCTQEND------------------------------ILLTTKLGQC 705
           + LD  DE+++     ++ +                              +   TK G C
Sbjct: 332 INLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMC 391

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           ++FP++ +R   GR S GV  I   +  D+++   ++ + +                   
Sbjct: 392 IKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE------------------- 431

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                            Q IL++S KG GKRT++ ++R+ +R G
Sbjct: 432 ---------------------------------QEILSISAKGIGKRTNAGEYRLQSRGG 458

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           KG+    ++  ++   L++V  V+++  ++ ++  G +IRV 
Sbjct: 459 KGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVD 498



 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 112/271 (41%), Gaps = 27/271 (9%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 45  LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---TTARDS 101

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 102 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 155

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    + +    +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 156 LENLIRDELKEIKSKFDVLRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 215

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R GKG  A      + I    + F  N +D ++ V+D+G L  + V +I   SR  
Sbjct: 216 EKQKRGGKGKLAVTTYDDDFIE---SFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTA 272

Query: 878 KG---VVIFSTAKDERVVSVERIRESEIVDE 905
           KG   V + +   DE++  +  I  ++  + 
Sbjct: 273 KGKAVVNLINLQADEKI--MAIIPTTDFDEN 301


>gi|47419998|gb|AAT27351.1| DNA gyrase A [Campylobacter coli]
          Length = 498

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 176/582 (30%), Positives = 300/582 (51%), Gaps = 115/582 (19%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKG 274

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+++L   E+I  I+P  + +    +  + F TK+G V+R  LS++  I   G  A
Sbjct: 275 KAVVNLINLQADEKIMAIIPTTDFD---ESKSLCFFTKNGIVKRTNLSEYQNIRSVGVRA 331

Query: 676 MKLDSRDEILSVETCTQEND------------------------------ILLTTKLGQC 705
           + LD  DE+++     ++ +                              +   TK G C
Sbjct: 332 INLDENDELVTAIIVQRDENEEVELLDDDNFNDENINPDENAIESVKGKMLFAVTKKGMC 391

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           ++FP++ +R   GR S GV  I   +  D+++   ++ + +                   
Sbjct: 392 IKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE------------------- 431

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                            Q IL++S KG GKRT++ ++R+ +R G
Sbjct: 432 ---------------------------------QEILSISAKGIGKRTNAGEYRLQSRGG 458

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           KG+    ++  ++   L++V  V+++  ++ ++  G +IRV 
Sbjct: 459 KGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRVD 498



 Score = 74.8 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 114/326 (34%), Gaps = 81/326 (24%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 45  LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---ATARDS 101

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 102 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 155

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    +      +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 156 LENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 215

Query: 818 RISNRSGKG-----------------------------------IRATDVSKINEIGA-- 840
               R GKG                                   ++   + + +      
Sbjct: 216 EKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGK 275

Query: 841 -LVAVFPVNDNDQIILV---------------SDKGTLIRVPVNE---IRIASRATKGVV 881
            +V +  +  +++I+ +               +  G + R  ++E   IR       GV 
Sbjct: 276 AVVNLINLQADEKIMAIIPTTDFDESKSLCFFTKNGIVKRTNLSEYQNIRSV-----GVR 330

Query: 882 IFSTAKDERVVSVERIRESEIVDEAE 907
             +  +++ +V+   I + +  +E E
Sbjct: 331 AINLDENDELVT-AIIVQRDENEEVE 355


>gi|9081889|gb|AAF82627.1| topoisomerase II subunit A [Staphylococcus hominis]
          Length = 143

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/143 (61%), Positives = 109/143 (76%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE ++ K    LL D+ KDT+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATN
Sbjct: 61  YTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATN 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IP HNL EV+DG + +  NPDI 
Sbjct: 121 IPPHNLTEVIDGVLRLSQNPDIT 143


>gi|167861148|gb|ACA05277.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861150|gb|ACA05278.1| gyrase subunit A [Klebsiella pneumoniae]
 gi|167861152|gb|ACA05279.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  303 bits (775), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HNL EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNLTEVINGCLAY 148


>gi|37998970|dbj|BAD00055.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998972|dbj|BAD00056.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|37998974|dbj|BAD00057.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 140

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 84/140 (60%), Positives = 114/140 (81%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  +L 
Sbjct: 61  YHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALEMLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|167861166|gb|ACA05286.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  302 bits (774), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 113/148 (76%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAVGMATNIP HN+ EV++GC+A 
Sbjct: 121 GSSGIAVGMATNIPPHNITEVINGCLAY 148


>gi|117654331|gb|ABK55596.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 200

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 116/200 (58%), Positives = 154/200 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+V 
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKEEILVX 180

Query: 270 EIPYQVNKAAMLEKIAELVR 289
           E+PYQVN A + E  A+LVR
Sbjct: 181 ELPYQVNXARLXEXXADLVR 200


>gi|1296444|emb|CAA64979.1| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58]
          Length = 148

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/148 (58%), Positives = 111/148 (75%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRRI+  M +MG+  N  + KCARI G+V+GK+HPHG+ ++YDAL R+AQD+S
Sbjct: 1   RDGLKPVHRRIIHAMSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
            R  +++GQGNFG++DGD  AA RYTE R+   A  LL+ +G+D VDFR  Y+   +EPV
Sbjct: 61  QRYPIVDGQGNFGNIDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPV 120

Query: 166 VLCARYPNVLVNGGGGIAVGMATNIPTH 193
           VL   +PN+L NG  GIAVGMATNIP H
Sbjct: 121 VLPGAFPNLLANGASGIAVGMATNIPPH 148


>gi|34541272|ref|NP_905751.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis W83]
 gi|34397588|gb|AAQ66650.1| DNA topoisomerase IV, A subunit, putative [Porphyromonas gingivalis
           W83]
          Length = 898

 Score =  302 bits (774), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 212/498 (42%), Gaps = 49/498 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N YL YA  VIL RA+P + DGLKPV RRIL+ M       N +  K A+++G+ M   
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMH--HWFDNGRMNKVAKVTGQTMA-L 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q       LIE QGN+G++  GD  AA RY E +L   A   L 
Sbjct: 101 HPHGDASINDALVQLGQK---GY-LIETQGNWGNILTGDEAAAGRYIEAKLSALAQETL- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                   ++ +YDGS  EPV L  ++P +L  G  GIAVG+ + +  HNLGE++  C+A
Sbjct: 156 -FNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIA 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +     DL         PDFPTG ++       + Y  GR    I+  + I     D  
Sbjct: 215 HLRGESFDLY--------PDFPTGGMMD-----ASRYNDGRRGGQIKSRAKI--RKLDNR 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + +TE+P     ++++E I +   + +I         +     R  I L  G S+D  +
Sbjct: 260 TLSITELPCGKTTSSLIESILKANEKGKIKIKRIDDMTAAEADIR--IHLAAGVSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP    +  +L+       E++ +     L + R   
Sbjct: 318 DALYAFTDCEVSQSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLEEKR--- 374

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                   A      +   I      E A  E        + ++                
Sbjct: 375 ---EQYLAASLERIFIEERIYKDREFEEAESEQDALMHVEARLEPYAHRFIRP------- 424

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++    + +LE+R+AR+           +  L  +I E   +  +   +     + 
Sbjct: 425 ----ITYDDLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAE---LEKNIREITAYTIRW 477

Query: 505 LLSVKDELDT--PRRTRI 520
              + +   +  PRRT++
Sbjct: 478 FEYLHEHYASRFPRRTQL 495


>gi|108937138|gb|ABG23381.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|108937142|gb|ABG23383.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 110/141 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|188994336|ref|YP_001928588.1| DNA topoisomerase IV subunit A [Porphyromonas gingivalis ATCC
           33277]
 gi|188594016|dbj|BAG32991.1| DNA topoisomerase IV A subunit [Porphyromonas gingivalis ATCC
           33277]
          Length = 898

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 131/498 (26%), Positives = 212/498 (42%), Gaps = 49/498 (9%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N YL YA  VIL RA+P + DGLKPV RRIL+ M       N +  K A+++G+ M   
Sbjct: 44  RNWYLDYASYVILERAVPHIEDGLKPVQRRILYTMH--HWFDNGRMNKVAKVTGQTMA-L 100

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+I DAL ++ Q       LIE QGN+G++  GD  AA RY E +L   A   L 
Sbjct: 101 HPHGDASINDALVQLGQK---GY-LIETQGNWGNILTGDEAAAGRYIEAKLSALAQETL- 155

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                   ++ +YDGS  EPV L  ++P +L  G  GIAVG+ + +  HNLGE++  C+A
Sbjct: 156 -FNDKITHWKRSYDGSEDEPVALPVKFPLLLAQGTEGIAVGLNSKVLPHNLGELLMACIA 214

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +     DL         PDFPTG ++       + Y  GR    I+  + I     D  
Sbjct: 215 HLRGESFDLY--------PDFPTGGMMD-----ASRYNDGRRGGQIKSRAKI--RKLDNR 259

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            + +TE+P     ++++E I +   + +I         +     R  I L  G S+D  +
Sbjct: 260 TLSITELPCGKTTSSLIESILKANEKGKIKIKRIDDMTAAEADIR--IHLAAGVSSDKTI 317

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + LY +T  +   S N   +   KP    +  +L+       E++ +     L + R   
Sbjct: 318 DALYAFTDCEVSQSPNACVIMDDKPVFLGVTDLLRYSAERTRELLKQELTIRLEEKR--- 374

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                   A      +   I      E A  E        + ++                
Sbjct: 375 ---EQYLAASLERIFIEERIYKDREFEEAESEQDALMHVEARLEPYAHRFIRP------- 424

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               ++    + +LE+R+AR+           +  L  +I E   +  +   +     + 
Sbjct: 425 ----VTYDDLKKLLEIRMARILRFNLPKHEAMMLQLEKDIAE---LEKNIREITAYTIRW 477

Query: 505 LLSVKDELDT--PRRTRI 520
              + +   +  PRRT++
Sbjct: 478 FEYLHEHYASRFPRRTQL 495


>gi|284154450|gb|ADB78326.1| DNA gyrase [Bacillus sp. B-51172]
 gi|284154458|gb|ADB78330.1| DNA gyrase [Bacillus sp. B-51176]
 gi|284154464|gb|ADB78333.1| DNA gyrase [Bacillus sp. B-51179]
 gi|284154564|gb|ADB78383.1| DNA gyrase [Bacillus sp. B-51232]
          Length = 189

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/189 (61%), Positives = 148/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+A+ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ AR+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV   P
Sbjct: 61  TIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSKKP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI L  LMEII GPDFPT  +ILGR+GI+ AY TGRGSI +R  + IE+TS  +  I+VT
Sbjct: 121 DITLPELMEIIPGPDFPTAGLILGRSGIRKAYETGRGSITLRAKAQIEETSSGKPVIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|208972173|gb|ACI32670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972175|gb|ACI32671.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|208972179|gb|ACI32673.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 135

 Score =  302 bits (773), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/135 (62%), Positives = 110/135 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQ 162
           K+TVDF  NYDG+ +
Sbjct: 121 KETVDFVDNYDGTEK 135


>gi|295394214|gb|ADG03718.1| DNA topoisomerase IV subunit A [Streptococcus australis]
 gi|295394230|gb|ADG03726.1| DNA topoisomerase IV subunit A [Streptococcus parasanguinis]
          Length = 151

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G   +K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|226451953|gb|ACO59156.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451959|gb|ACO59159.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 109/138 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDG 201
           VGMATNIP HNL EV+DG
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|295394240|gb|ADG03731.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae]
          Length = 151

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 107/151 (70%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  + K + K A+  G VMG +HPHG+++IYDA
Sbjct: 1   ITRRALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R  LIE  GN GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|295394212|gb|ADG03717.1| DNA topoisomerase IV subunit A [Streptococcus anginosus]
          Length = 151

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 110/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKDTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|108937140|gb|ABG23382.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
 gi|116582927|gb|ABK00081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|284154380|gb|ADB78291.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154396|gb|ADB78299.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154398|gb|ADB78300.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154422|gb|ADB78312.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154430|gb|ADB78316.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154442|gb|ADB78322.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154480|gb|ADB78341.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154494|gb|ADB78348.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154504|gb|ADB78353.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154518|gb|ADB78360.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154520|gb|ADB78361.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154522|gb|ADB78362.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154524|gb|ADB78363.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154532|gb|ADB78367.1| DNA gyrase [Bacillus sp. B-51215]
 gi|284154536|gb|ADB78369.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154538|gb|ADB78370.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154540|gb|ADB78371.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154546|gb|ADB78374.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154550|gb|ADB78376.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154552|gb|ADB78377.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154554|gb|ADB78378.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154558|gb|ADB78380.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154568|gb|ADB78385.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154570|gb|ADB78386.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154572|gb|ADB78387.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154574|gb|ADB78388.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154580|gb|ADB78391.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154582|gb|ADB78392.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154584|gb|ADB78393.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154586|gb|ADB78394.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154588|gb|ADB78395.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154590|gb|ADB78396.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154592|gb|ADB78397.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154598|gb|ADB78400.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154600|gb|ADB78401.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154602|gb|ADB78402.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154604|gb|ADB78403.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154612|gb|ADB78407.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154614|gb|ADB78408.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|9081893|gb|AAF82629.1| topoisomerase II subunit A [Staphylococcus simulans]
          Length = 143

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/143 (62%), Positives = 111/143 (77%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQ++S R  L++GQGNFGS+DGD  AA R
Sbjct: 1   PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K    LL D+ KDT+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATN
Sbjct: 61  YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATN 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDID 212
           IP HNL EV+DG +++  NPDI 
Sbjct: 121 IPPHNLTEVIDGVLSLSKNPDIS 143


>gi|3411102|gb|AAC31150.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|313192093|emb|CBX19906.1| gyrase A [Clostridium perfringens]
          Length = 231

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 135/232 (58%), Positives = 178/232 (76%), Gaps = 1/232 (0%)

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVN
Sbjct: 1   GSVDGDSAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVN 60

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GIAVGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI
Sbjct: 61  GSSGIAVGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGI 120

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
           + AY TG+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+
Sbjct: 121 RAAYETGKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGIS 179

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           DLRDESDR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P
Sbjct: 180 DLRDESDREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQP 231


>gi|192382652|gb|ACF04347.1| GyrA [Neisseria meningitidis]
          Length = 147

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 111/141 (78%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           +A++VI+GRA+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ 
Sbjct: 7   FAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDT 66

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV
Sbjct: 67  AVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETV 126

Query: 152 DFRPNYDGSFQEPVVLCARYP 172
           +F PNYDGS  EP+VL   +P
Sbjct: 127 NFGPNYDGSEHEPLVLPDPFP 147


>gi|261599203|gb|ACX85664.1| ParC [Streptococcus mitis]
          Length = 160

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 83/154 (53%), Positives = 112/154 (72%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALA 98
            RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ 
Sbjct: 7   DRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMV 66

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 67  RMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 126

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            + +EP VL A + N+LVNG  GI+ G AT+IP+
Sbjct: 127 DTEKEPTVLPAAFSNLLVNGSTGISAGYATDIPS 160


>gi|190888732|gb|ACE95991.1| DNA gyrase subunit A [Mycoplasma gallisepticum]
          Length = 143

 Score =  301 bits (770), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 83/143 (58%), Positives = 109/143 (76%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           E++ S++ YA++VI+ RA+P+ RDGLKPVHRR+L+G    G+  +K Y K A+I G VMG
Sbjct: 1   ELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG++AIY+ + RMAQ +SLR +LI+G GNFGS+DGD  AA RYTE RL K +  +L
Sbjct: 61  KYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARLSKISAEML 120

Query: 144 DDLGKDTVDFRPNYDGSFQEPVV 166
            ++ KDTVDF  NYD S QEPVV
Sbjct: 121 RNIDKDTVDFVDNYDASEQEPVV 143


>gi|284154528|gb|ADB78365.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+R NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYRDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|117654321|gb|ABK55591.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 198

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 112/195 (57%), Positives = 151/195 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +++I+V 
Sbjct: 121 EITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKKRIIVP 180

Query: 270 EIPYQVNKAAMLEKI 284
           E+ YQ NKA ++EKI
Sbjct: 181 ELXYQXNKAXLIEKI 195


>gi|3411104|gb|AAC31151.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411106|gb|AAC31152.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 116/165 (70%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYEAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|284154498|gb|ADB78350.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
          Length = 189

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNXRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|295394222|gb|ADG03722.1| DNA topoisomerase IV subunit A [Streptococcus intermedius]
          Length = 151

 Score =  300 bits (769), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 110/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLAEIAGYLLQDIEKDTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|284154616|gb|ADB78409.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  300 bits (769), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 148/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154578|gb|ADB78390.1| DNA gyrase [Bacillus sp. B-51240]
 gi|284154594|gb|ADB78398.1| DNA gyrase [Bacillus sp. B-51249]
 gi|284154596|gb|ADB78399.1| DNA gyrase [Bacillus sp. B-51250]
          Length = 189

 Score =  300 bits (768), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           D+ +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DVTIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154492|gb|ADB78347.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITVQDLMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154424|gb|ADB78313.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154428|gb|ADB78315.1| DNA gyrase [Bacillus sp. B-51157]
 gi|284154444|gb|ADB78323.1| DNA gyrase [Bacillus sp. B-51169]
 gi|284154470|gb|ADB78336.1| DNA gyrase [Bacillus sp. B-51182]
 gi|284154476|gb|ADB78339.1| DNA gyrase [Bacillus sp. B-51185]
 gi|284154478|gb|ADB78340.1| DNA gyrase [Bacillus sp. B-51186]
 gi|284154506|gb|ADB78354.1| DNA gyrase [Bacillus sp. B-51202]
 gi|284154514|gb|ADB78358.1| DNA gyrase [Bacillus sp. B-51206]
 gi|284154534|gb|ADB78368.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154544|gb|ADB78373.1| DNA gyrase [Bacillus sp. B-51222]
 gi|284154606|gb|ADB78404.1| DNA gyrase [Bacillus sp. B-51256]
 gi|284154608|gb|ADB78405.1| DNA gyrase [Bacillus sp. B-51257]
 gi|284154610|gb|ADB78406.1| DNA gyrase [Bacillus sp. B-51258]
 gi|284154620|gb|ADB78411.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154636|gb|ADB78419.1| DNA gyrase [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|284154378|gb|ADB78290.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQDLMEVIPGPDFPTAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|37998984|dbj|BAD00062.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           dysgalactiae]
          Length = 140

 Score =  300 bits (768), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 85/140 (60%), Positives = 115/140 (82%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGK
Sbjct: 1   MKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKTHKKSARITGDVMGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL 
Sbjct: 61  YHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLR 120

Query: 145 DLGKDTVDFRPNYDGSFQEP 164
           D+ K+TVDF+ NYDGS +EP
Sbjct: 121 DINKNTVDFQDNYDGSEREP 140


>gi|117950173|gb|ABK58470.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 148

 Score =  300 bits (768), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 86/145 (59%), Positives = 111/145 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+L
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 176 VNGGGGIAVGMATNIPTHNLGEVVD 200
           VNG  GIAVGMATNIP HNL EV++
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTEVIN 145


>gi|295394220|gb|ADG03721.1| DNA topoisomerase IV subunit A [Streptococcus infantis]
 gi|295394224|gb|ADG03723.1| DNA topoisomerase IV subunit A [Streptococcus mitis]
 gi|295394228|gb|ADG03725.1| DNA topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
          Length = 151

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|116582925|gb|ABK00080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  300 bits (767), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 110/141 (78%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++A+Y+ + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSAVYNTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|3411110|gb|AAC31154.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411112|gb|AAC31155.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|3411114|gb|AAC31156.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 115/165 (69%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDYSVYGAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|284154384|gb|ADB78293.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154400|gb|ADB78301.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154406|gb|ADB78304.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154426|gb|ADB78314.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154434|gb|ADB78318.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154438|gb|ADB78320.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154446|gb|ADB78324.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154502|gb|ADB78352.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154508|gb|ADB78355.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154516|gb|ADB78359.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154548|gb|ADB78375.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154556|gb|ADB78379.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154562|gb|ADB78382.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154576|gb|ADB78389.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154618|gb|ADB78410.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154622|gb|ADB78412.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
 gi|284154624|gb|ADB78413.1| DNA gyrase [Bacillus subtilis subsp. inaquosorum]
          Length = 189

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|108937144|gb|ABG23384.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  300 bits (767), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 82/141 (58%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYDTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|284154628|gb|ADB78415.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  300 bits (767), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G +AV +NP
Sbjct: 61  TIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I    LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|327179196|gb|AEA30141.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Schwarzengrund]
          Length = 141

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/141 (60%), Positives = 108/141 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
            +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVM 120

Query: 168 CARYPNVLVNGGGGIAVGMAT 188
             + PN+LVNG  GIAVG AT
Sbjct: 121 PTKIPNLLVNGSSGIAVGKAT 141


>gi|33469556|gb|AAQ19803.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 153

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 83/153 (54%), Positives = 110/153 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A
Sbjct: 1   YSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDA 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV
Sbjct: 61  SIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTV 120

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            F  N+D + +EP VL A +PN+LVNG  GI+ 
Sbjct: 121 SFAWNFDDTEKEPTVLPAAFPNLLVNGSSGISA 153


>gi|219815929|gb|ACL37051.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/138 (61%), Positives = 112/138 (81%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ 
Sbjct: 1   VNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 61  GDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 120

Query: 139 AHFLLDDLGKDTVDFRPN 156
           AH L+ DL K+TVDF  N
Sbjct: 121 AHELMADLEKETVDFVDN 138


>gi|321116500|dbj|BAJ72202.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 160

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/160 (51%), Positives = 110/160 (68%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + D M   +  Y+  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G 
Sbjct: 1   LEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGN 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A 
Sbjct: 61  IMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAG 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
           +LL D+ K+TV F  N+D + +EP VL A +PN+LVNG  
Sbjct: 121 YLLQDIEKNTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSS 160


>gi|284154388|gb|ADB78295.1| DNA gyrase [Bacillus sp. B-51135]
 gi|284154390|gb|ADB78296.1| DNA gyrase [Bacillus sp. B-51136]
 gi|284154416|gb|ADB78309.1| DNA gyrase [Bacillus sp. B-51150]
 gi|284154420|gb|ADB78311.1| DNA gyrase [Bacillus sp. B-51152]
 gi|284154432|gb|ADB78317.1| DNA gyrase [Bacillus sp. B-51159]
 gi|284154456|gb|ADB78329.1| DNA gyrase [Bacillus sp. B-51175]
 gi|284154460|gb|ADB78331.1| DNA gyrase [Bacillus sp. B-51177]
 gi|284154468|gb|ADB78335.1| DNA gyrase [Bacillus sp. B-51181]
 gi|284154500|gb|ADB78351.1| DNA gyrase [Bacillus sp. B-51199]
 gi|284154512|gb|ADB78357.1| DNA gyrase [Bacillus sp. B-51205]
 gi|284154530|gb|ADB78366.1| DNA gyrase [Bacillus sp. B-51214]
          Length = 189

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|219815937|gb|ACL37055.1| GyrA [Salmonella enterica]
          Length = 138

 Score =  299 bits (766), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/138 (60%), Positives = 111/138 (80%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
            V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+
Sbjct: 1   PVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARV 60

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K
Sbjct: 61  VGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 120

Query: 138 AAHFLLDDLGKDTVDFRP 155
            AH L+ DL K+TVDF  
Sbjct: 121 IAHELMADLEKETVDFVD 138


>gi|284154402|gb|ADB78302.1| DNA gyrase [Bacillus mojavensis]
 gi|284154474|gb|ADB78338.1| DNA gyrase [Bacillus mojavensis]
 gi|284154496|gb|ADB78349.1| DNA gyrase [Bacillus mojavensis]
 gi|284154510|gb|ADB78356.1| DNA gyrase [Bacillus mojavensis]
 gi|284154566|gb|ADB78384.1| DNA gyrase [Bacillus mojavensis]
 gi|284154634|gb|ADB78418.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 149/189 (78%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|3411108|gb|AAC31153.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 165

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/165 (52%), Positives = 115/165 (69%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           V RRIL+ M   G   +K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LI
Sbjct: 1   VQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPHGDFSVYKAMVRLSQDWKLRHVLI 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E  GN GS+D DPPAA RYTE +L   A  LL D+ K+TV F PNYD +  EP+VL +R+
Sbjct: 61  EMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRF 120

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           PN+LVNG  GI+ G AT+IP HNL EV+   +  IDNPDI ++ L
Sbjct: 121 PNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQL 165


>gi|295394216|gb|ADG03719.1| DNA topoisomerase IV subunit A [Streptococcus cristatus]
 gi|295394218|gb|ADG03720.1| DNA topoisomerase IV subunit A [Streptococcus gordonii]
 gi|295394238|gb|ADG03730.1| DNA topoisomerase IV subunit A [Streptococcus sanguinis SK1]
          Length = 151

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 110/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQERALPDIRDGLKPVQRRILYSMNKDGNTFDKGYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ KDTV F  N
Sbjct: 61  MVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMAGYLLQDIEKDTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGATGISAGYA 151


>gi|330939843|gb|EGH43077.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 173

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 79/178 (44%), Positives = 120/178 (67%), Gaps = 7/178 (3%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++ +    +    G+   S+ D  + +YL Y++ VI+ RA+P + DGLKPV RRI++ M
Sbjct: 1   MSDSL----DLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 57  SELGLGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAP 116

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           D DP   AA RYTE RL + +  LL +LG+ T D+ PN+DG+  EP VL AR PN+L+
Sbjct: 117 D-DPKSFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILL 173


>gi|284154560|gb|ADB78381.1| DNA gyrase [Bacillus vallismortis]
          Length = 189

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 113/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D+  NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGEV+DG +AV +NP
Sbjct: 61  TIDYHDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           +I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 EITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|325474427|gb|EGC77614.1| topoisomerase IV [Treponema denticola F0402]
          Length = 700

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 128/510 (25%), Positives = 220/510 (43%), Gaps = 53/510 (10%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           +L YA  VI  RAIPDL DGLKPV RRIL  + +M    + K+ K A + G  M KYHPH
Sbjct: 9   FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM-KYHPH 64

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAAHFLLDDLG 147
           G+A+I +AL  +A     + L I+ QGNFG++  GD  +A RY ECR+   A  +     
Sbjct: 65  GDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNDFAKTIFY--N 118

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
               D+  +YDG  +EP+   A+ P +L  G  GIAVGM+T I  HN+ E+++   A + 
Sbjct: 119 PHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAEKAFLS 178

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
                L         PDFPTG +I       + Y  G G +++R             +IV
Sbjct: 179 GKSFAL--------FPDFPTGGLID-----VSEYEDGLGKVLVRAKLDTSDEK----RIV 221

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVILN 325
           + E+P+     +M+  I    +  ++     + + SD  G +V I  +L RG  +  +++
Sbjct: 222 IRELPFGSTTESMINSIEAASKAGKVK----ISEISDYTGEKVEIELKLPRGVYSADVVD 277

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY +T  +     N++ +    P + T+  I+K       +++    +Y      +R H
Sbjct: 278 ALYAFTECEQSIPCNLLVIKDNLPVQITVTDIIKYHAKQLMQILKDELEYERAMLTERLH 337

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
           +     I +   + + + I      E     +++                        + 
Sbjct: 338 LRTLERIFIE--ERIYKKIETMKTAEGVINAVIKGFVP-----------------FKKEL 378

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              ++E     +L++ + R++    +  R E+  +   +KE   +L +       +   +
Sbjct: 379 IRDVTEDDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAKLLKNLKGYAISVLDGI 438

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
            +     +  R+T I         E     
Sbjct: 439 AAKLPAEEFKRKTEITGFTKVDVKEAVTRD 468


>gi|226451955|gb|ACO59157.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451957|gb|ACO59158.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451961|gb|ACO59160.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451963|gb|ACO59161.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451965|gb|ACO59162.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451967|gb|ACO59163.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451969|gb|ACO59164.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451973|gb|ACO59166.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451975|gb|ACO59167.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451977|gb|ACO59168.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451979|gb|ACO59169.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451981|gb|ACO59170.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451983|gb|ACO59171.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451985|gb|ACO59172.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451987|gb|ACO59173.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451989|gb|ACO59174.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451991|gb|ACO59175.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451993|gb|ACO59176.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451995|gb|ACO59177.1| topoisomerase II subunit A [Vibrio vulnificus]
 gi|226451997|gb|ACO59178.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  299 bits (765), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 108/138 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDG 201
           VGMATNIP HNL EV+DG
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|226451971|gb|ACO59165.1| topoisomerase II subunit A [Vibrio vulnificus]
          Length = 138

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 89/138 (64%), Positives = 108/138 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEVRMAKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTHNLGEVVDG 201
           VGMATNIP HNL EV+DG
Sbjct: 121 VGMATNIPPHNLTEVIDG 138


>gi|208972171|gb|ACI32669.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 132

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/132 (64%), Positives = 108/132 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDG 159
           K+TVDF  NYDG
Sbjct: 121 KETVDFVDNYDG 132


>gi|167861156|gb|ACA05281.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 148

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/148 (59%), Positives = 112/148 (75%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 61  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVN 120

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           G  GIAV MATNIP HNL EV++GC+A 
Sbjct: 121 GASGIAVRMATNIPPHNLTEVINGCLAY 148


>gi|108937146|gb|ABG23385.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|117654325|gb|ABK55593.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 189

 Score =  298 bits (763), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 149/187 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVN 276
           E+PYQVN
Sbjct: 181 ELPYQVN 187


>gi|117654323|gb|ABK55592.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis]
          Length = 187

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 111/187 (59%), Positives = 149/187 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVN 276
           E+PYQVN
Sbjct: 181 ELPYQVN 187


>gi|46406038|gb|AAS93684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 142

 Score =  298 bits (762), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/142 (60%), Positives = 108/142 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+L
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLL 120

Query: 176 VNGGGGIAVGMATNIPTHNLGE 197
           VNG  GIAVGMATNIP HNL E
Sbjct: 121 VNGSSGIAVGMATNIPPHNLTE 142


>gi|284154630|gb|ADB78416.1| DNA gyrase [Bacillus tequilensis]
          Length = 189

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 151/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV ++P
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSESP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|51246133|ref|YP_066017.1| DNA topoisomerase IV subunit A [Desulfotalea psychrophila LSv54]
 gi|50877170|emb|CAG37010.1| probable topoisomerase IV, subunit A [Desulfotalea psychrophila
           LSv54]
          Length = 663

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 144/590 (24%), Positives = 242/590 (41%), Gaps = 70/590 (11%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +    + ++L Y   VI  RAIP + DGLKPV RRIL  +  M    + ++ K A 
Sbjct: 4   VPGKLHQLFEYNFLEYTSYVIRERAIPAIDDGLKPVQRRILQTLFNM---EDGRFHKVAN 60

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRL 135
           + GE M K HPHG+A+I+ AL  +A     +  LIE QGNFG++  GD  +A RY ECRL
Sbjct: 61  LVGETM-KLHPHGDASIFSALVNLA----NKGFLIERQGNFGNIFTGDSASAPRYIECRL 115

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  +L    KD  +F  +YDG   EPV L A+ P +L+ G  GIAVGMAT I  HN 
Sbjct: 116 SPLAKEVL--FNKDITEFIDSYDGRMVEPVTLPAKLPLLLLQGAEGIAVGMATKIMPHNF 173

Query: 196 GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
            E++    AV+ + +  L         PDFP G ++       + Y  G G I  R    
Sbjct: 174 CELLQAQKAVLLDEEFTLY--------PDFPQGGLVD-----VSGYEDGNGKIKCRARIR 220

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
                 + + I++ EIPY     ++ + I +  +  +I  I+   ++   +   + I++ 
Sbjct: 221 ----ELNEKTIIIDEIPYSTTTQSLTDSIEKAAKAGKIKIIS--INDYTAEKVEIEIKVA 274

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           RG  A   +  LY +T  +   S N+  + G  P   ++  +++      +  + +  + 
Sbjct: 275 RGIYAKDTIKALYAFTDCEVPISPNLTLIKGKTPATSSVREVIEYNTLKLKADLTKELEI 334

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +  ++ H    L   +     + + I    + E+                     +D
Sbjct: 335 NLARLEEKLHA--RLLEQIFIEQRLYKNIEEETSYESIMAS-----------------VD 375

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            +     S+    ++E     +LE+R+ R++    +    E+ ++  +IK     L    
Sbjct: 376 TALIPFRSELFRDVTEEDVTRLLEIRIKRISRFDINKQDKEIRAIRKDIKAIKISLKDMV 435

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
                   +LL+   E   PR+T I +                         V+++ LS 
Sbjct: 436 AFTIASIDKLLAKYGENY-PRKTEIKQFSEV--------------------VVRKIALSN 474

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWR 605
                    G  G  ++ E+        S +  +    S G      V  
Sbjct: 475 LTVGYSRETGFLGHSVKGEEEEDFSVTCSEYDRLFLIYSDGRYKVIPVTD 524


>gi|295394232|gb|ADG03727.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 109/151 (72%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|193735146|gb|ACF20082.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  298 bits (762), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDYAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|284154526|gb|ADB78364.1| DNA gyrase [Bacillus sp. B-51212]
          Length = 189

 Score =  297 bits (761), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 114/189 (60%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + I++TS  +E+IVVT
Sbjct: 121 DITISELMEFIPGPDFPTAGKILGRSGIRKAYESGRGSITIRAKAEIDQTSSGKERIVVT 180

Query: 270 EIPYQVNKA 278
           EIPYQVNKA
Sbjct: 181 EIPYQVNKA 189


>gi|116582920|gb|ABK00079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  297 bits (761), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 109/141 (77%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y+ + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYNTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|313192095|emb|CBX19907.1| gyrase A [Clostridium perfringens]
          Length = 266

 Score =  297 bits (760), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 143/264 (54%), Positives = 200/264 (75%), Gaps = 1/264 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 4   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 63

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 64  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 123

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 124 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 182

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ R
Sbjct: 183 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITR 242

Query: 372 RTKYLLNKARDRAHVLVGLAIAVA 395
           RT++ LNKA++RAH+L GL IA+ 
Sbjct: 243 RTQFELNKAKERAHILEGLIIALD 266


>gi|193735136|gb|ACF20077.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  297 bits (760), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|193735140|gb|ACF20079.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYTMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|47419986|gb|AAT27345.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 175/577 (30%), Positives = 295/577 (51%), Gaps = 115/577 (19%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARG 615
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV++ P GS  A+G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKXPEGSRTAKG 274

Query: 616 KALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
           KA++N+++L   E+I  I+P  + +    N  + F TK+G V+R  LS++  I   G  A
Sbjct: 275 KAVVNLINLQADEKIMAIIPTTDFD---ENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKA 331

Query: 676 MKLDSRDEILSVETCTQEND------------------------------ILLTTKLGQC 705
           + LD  DE+++     ++ +                              +   TK G C
Sbjct: 332 INLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMC 391

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           ++FP++ +R   GR S GV  I   +  D+++   ++ + +                   
Sbjct: 392 IKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE------------------- 431

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                            Q IL++S KG GKRT++ ++R+ +R G
Sbjct: 432 ---------------------------------QEILSISAKGIGKRTNAGEYRLQSRGG 458

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
           KG+    ++  ++   L++V  V+++  ++ ++  G 
Sbjct: 459 KGVICMKLT--DKTKELISVVIVDESMDLMALTSSGK 493



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 111/271 (40%), Gaps = 27/271 (9%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 45  LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---TTARDS 101

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 102 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 155

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    + +    +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 156 LENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 215

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R GKG  A      + I    + F  N +D ++ V+D+G L  + V +    SR  
Sbjct: 216 EKQKRGGKGKLAVTTYDDDFIE---SFFTANTHDTLMFVTDRGQLYWLKVYKXPEGSRTA 272

Query: 878 KG---VVIFSTAKDERVVSVERIRESEIVDE 905
           KG   V + +   DE++  +  I  ++  + 
Sbjct: 273 KGKAVVNLINLQADEKI--MAIIPTTDFDEN 301


>gi|219815935|gb|ACL37054.1| GyrA [Salmonella enterica]
          Length = 136

 Score =  297 bits (759), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 84/136 (61%), Positives = 110/136 (80%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 141 FLLDDLGKDTVDFRPN 156
            L+ DL K+TVDF  N
Sbjct: 121 ELMADLEKETVDFVDN 136


>gi|295394234|gb|ADG03728.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae]
          Length = 151

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 81/151 (53%), Positives = 108/151 (71%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I  RA+PD+RDGLKPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA
Sbjct: 1   IQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDA 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           + RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N
Sbjct: 61  MVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWN 120

Query: 157 YDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
           +D + +EP VL A +PN+LVNG  GI+ G A
Sbjct: 121 FDDTEKEPTVLPAAFPNLLVNGSTGISAGYA 151


>gi|284803671|emb|CBJ21241.1| DNA gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 142

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 112/142 (78%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K Y K ARI GEV+GKYHPHG++A+
Sbjct: 1   MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120

Query: 154 RPNYDGSFQEPVVLCARYPNVL 175
           + N DGS +EP VL +R+P +L
Sbjct: 121 QDNSDGSKREPAVLPSRFPKML 142


>gi|308199035|dbj|BAJ22652.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|308199041|dbj|BAJ22655.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 158

 Score =  297 bits (759), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 91/158 (57%), Positives = 115/158 (72%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           GNFGS+DGD  AA RYTE ++ K +H LL D+ KDTVDF PNYDGS  EP VL +R PN+
Sbjct: 61  GNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNL 120

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           L+NG  GIAVGMATNIP H+L E++DG + ++D+ D  
Sbjct: 121 LLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDAS 158


>gi|193735142|gb|ACF20080.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  296 bits (758), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG++ +Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDSPVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|67463753|pdb|1ZI0|A Chain A, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
 gi|67463754|pdb|1ZI0|B Chain B, A Superhelical Spiral In Escherichia Coli Dna Gyrase A C-
           Terminal Domain Imparts Unidirectional Supercoiling Bias
          Length = 307

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 133/365 (36%), Positives = 208/365 (56%), Gaps = 59/365 (16%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
           +ED+VVT+SH GYVK  PLS Y AQRRGGKG+S   +++EDF+  L + +TH  +L FSS
Sbjct: 2   QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 61

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G VY  KV++LP  +  ARG+ ++N+L L Q ERIT I+P  E E     + V  AT +
Sbjct: 62  RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFE---EGVKVFMATAN 118

Query: 655 GNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           G V++  L++F ++  +GK+A+KL   DE++ V+  + E++++L +  G+ VRF  S++R
Sbjct: 119 GTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVR 178

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              G N+ GVRGI L +GD+V+S+ +     A                            
Sbjct: 179 AM-GCNTTGVRGIRLGEGDKVVSLIVPRGDGA---------------------------- 209

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                    ILT ++ G+GKRT+  ++   +R+ KG+ +  V++
Sbjct: 210 -------------------------ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTE 244

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N  G +V    V+D DQI++++D GTL+R  V+EI I  R T+GV++  TA+DE VV +
Sbjct: 245 RN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGL 302

Query: 895 ERIRE 899
           +R+ E
Sbjct: 303 QRVAE 307



 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 6/110 (5%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           +E  ++T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+ 
Sbjct: 2   QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILC 58

Query: 856 VSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEI 902
            S +G +  + V ++  A+R  +G   V +    +DER+ ++  + E E 
Sbjct: 59  FSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEE 108


>gi|77166858|gb|ABA62405.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 152

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/152 (54%), Positives = 109/152 (71%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+ 
Sbjct: 1   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYTE RL  A+  
Sbjct: 61  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           L++DL K+TV+  PNYD + +EP V  +++P 
Sbjct: 121 LMEDLDKNTVEMVPNYDETKKEPTVFPSKFPM 152


>gi|153025|gb|AAA26636.1| gyrase A [Staphylococcus aureus]
          Length = 146

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/144 (57%), Positives = 110/144 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAAHFLLDDLGKDTVDF 153
           YTE R+ K    LL D+ KDT+DF
Sbjct: 123 YTEARMTKITLELLRDINKDTIDF 146


>gi|47419994|gb|AAT27349.1| DNA gyrase A [Campylobacter coli]
          Length = 493

 Score =  296 bits (758), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 176/577 (30%), Positives = 297/577 (51%), Gaps = 115/577 (19%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT 
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S 
Sbjct: 107 ------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSE 154

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP  
Sbjct: 155 TLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSK 214

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+
Sbjct: 215 QYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           GKA++N+++L   E+I  I+P  + +    N  + F TK+G V+R  LS++  I   G  
Sbjct: 275 GKAVVNLINLQADEKIMAIIPTTDFD---ENKSLCFFTKNGIVKRTNLSEYQNIRSVGVK 331

Query: 675 AMKLDSRDEILSVETCTQEND------------------------------ILLTTKLGQ 704
           A+ LD  DE+++     ++ +                              +   TK G 
Sbjct: 332 AINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGM 391

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           C++FP++ +R   GR S GV  I   +  D+++   ++ + +                  
Sbjct: 392 CIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE------------------ 432

Query: 764 LISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS 823
                                             Q IL++S KG GKRT++ ++R+ +R 
Sbjct: 433 ----------------------------------QEILSISAKGIGKRTNAGEYRLQSRG 458

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           GKG+    ++  ++   L++V  V+++  ++ ++  G
Sbjct: 459 GKGVICMKLT--DKTKELISVVIVDESMDLMALTSSG 493



 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 112/271 (41%), Gaps = 27/271 (9%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 46  LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---TTARDS 102

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 103 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 156

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    + +    +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 157 LENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 216

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRAT 877
               R GKG  A      + I    + F  N +D ++ V+D+G L  + V +I   SR  
Sbjct: 217 EKQKRGGKGKLAVTTYDDDFIE---SFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTA 273

Query: 878 KG---VVIFSTAKDERVVSVERIRESEIVDE 905
           KG   V + +   DE++  +  I  ++  + 
Sbjct: 274 KGKAVVNLINLQADEKI--MAIIPTTDFDEN 302


>gi|94270066|ref|ZP_01291646.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93450953|gb|EAT01942.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 662

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 152/665 (22%), Positives = 259/665 (38%), Gaps = 85/665 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +      ++L Y   VI  RAIPDL DGLKPV RRIL  +  M    + ++ K A + G
Sbjct: 8   ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHKVANVVG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           E M K HPHG+A+I+ AL  +A   +    LI+ QGNFG+V  GD  +A RY ECRL   
Sbjct: 65  ETM-KLHPHGDASIFSALVNLA---NKGY-LIDRQGNFGNVHTGDGASAPRYIECRLSPL 119

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   +    K+  +F  +YDG  +EPV L AR P +L+ G  GIAVGMAT I  HN GE+
Sbjct: 120 ARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 177

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     ++     +L         PDFP G ++       + Y  G G +  R       
Sbjct: 178 LTASKQILREEPFEL--------FPDFPQGGLLD-----ASGYEDGNGRLRCRARIETRD 224

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  IV+ +IPY     +++E + +  R  +   ++   D+   +   + I+L RG 
Sbjct: 225 DK----TIVIRDIPYGTTTQSLIESVEKAARAGKFKILS--IDDYTAEDVEIEIKLARGF 278

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+  +  LY +T  +   S N   +    P   T+  +L+          + + +  L+
Sbjct: 279 KAEETIKALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENT--ARLRQLLKKELELD 336

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            AR R  +   L   +   + + + I   P+                 +  ++  ID + 
Sbjct: 337 LARLREKLQARLLEQIFIEERLYKQIEECPS-----------------LAVVLTTIDKAL 379

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               ++    +S      +LE+R+ R++    +  + E+  +  +I        + + L 
Sbjct: 380 KPFAAELVRPVSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVE---KNLADLT 436

Query: 499 GIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
               + L  +        PRRT                       ++    V+   +++ 
Sbjct: 437 AYAIRFLDDLLKRYGQQYPRRTE----------------------LTSFKEVQASQVALS 474

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
                       +  + +    +    S +  +L  S  G+     V             
Sbjct: 475 NLSLAYDPESGFLGTQVKAPAENRLACSEYDKILLISRSGWYKVVAVPD---------KI 525

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + + L         TI      + + N  YV   T    +   +   F +  RS  + +
Sbjct: 526 FVGHDLKWWGKAADKTIFNLVYRDGAQNLCYVKRFTTPKFILDKEYRLFAEHRRSEILFL 585

Query: 677 KLDSR 681
           K  S 
Sbjct: 586 KTGSG 590


>gi|193735144|gb|ACF20081.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/141 (57%), Positives = 108/141 (76%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDFAVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|284154452|gb|ADB78327.1| DNA gyrase [Bacillus subtilis subsp. spizizenii]
 gi|284154454|gb|ADB78328.1| DNA gyrase [Bacillus sp. B-51174]
          Length = 189

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 112/189 (59%), Positives = 150/189 (79%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G G FGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGKFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|27262984|emb|CAD19825.1| gyrase A subunit [Yersinia ruckeri]
 gi|27262986|emb|CAD19826.2| gyrase A subunit [Yersinia ruckeri]
          Length = 134

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 87/134 (64%), Positives = 104/134 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH LL DL KDTVDF PNYDG+ Q P V+  R PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEVRMSKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGS 120

Query: 180 GGIAVGMATNIPTH 193
            GIAVGMATNIP H
Sbjct: 121 SGIAVGMATNIPPH 134


>gi|193735138|gb|ACF20078.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 141

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 107/141 (75%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRR+L+ M ++   WN  Y K ARI G+V+GKYHPHG+  +Y  + RM
Sbjct: 1   ALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDCPVYYTIVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           AQ++++R +LI+GQGNFGSVDG   AA RYTE R+ K +H +L D+ ++TV+F PNYDGS
Sbjct: 61  AQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKISHEMLADIEEETVNFGPNYDGS 120

Query: 161 FQEPVVLCARYPNVLVNGGGG 181
             EP+VL  R+P +LVNG  G
Sbjct: 121 EHEPLVLPTRFPTLLVNGSSG 141


>gi|94264176|ref|ZP_01287973.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
 gi|93455434|gb|EAT05632.1| DNA gyrase/topoisomerase IV, subunit A [delta proteobacterium
           MLMS-1]
          Length = 711

 Score =  295 bits (756), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 152/665 (22%), Positives = 259/665 (38%), Gaps = 85/665 (12%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +      ++L Y   VI  RAIPDL DGLKPV RRIL  +  M    + ++ K A + G
Sbjct: 57  ELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHKVANVVG 113

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           E M K HPHG+A+I+ AL  +A   +    LI+ QGNFG+V  GD  +A RY ECRL   
Sbjct: 114 ETM-KLHPHGDASIFSALVNLA---NKGY-LIDRQGNFGNVHTGDGASAPRYIECRLSPL 168

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   +    K+  +F  +YDG  +EPV L AR P +L+ G  GIAVGMAT I  HN GE+
Sbjct: 169 ARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGEL 226

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     ++     +L         PDFP G ++       + Y  G G +  R       
Sbjct: 227 LTASKQILREEPFEL--------FPDFPQGGLLD-----ASGYEDGNGRLRCRARIETRD 273

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  IV+ +IPY     +++E + +  R  +   ++   D+   +   + I+L RG 
Sbjct: 274 DK----TIVIRDIPYGTTTQSLIESVEKAARAGKFKILS--IDDYTAEDVEIEIKLARGF 327

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+  +  LY +T  +   S N   +    P   T+  +L+          + + +  L+
Sbjct: 328 KAEETIKALYAFTDCEIPISPNFTVIREQTPAIMTVSEVLRENT--ARLRQLLKKELELD 385

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            AR R  +   L   +   + + + I   P+                 +  ++  ID + 
Sbjct: 386 LARLREKLQARLLEQIFIEERLYKQIEECPS-----------------LAVVLTTIDKAL 428

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               ++    +S      +LE+R+ R++    +  + E+  +  +I        + + L 
Sbjct: 429 KPFAAELVRPVSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVE---KNLADLT 485

Query: 499 GIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
               + L  +        PRRT                       ++    V+   +++ 
Sbjct: 486 AYAIRFLDDLLKRYGQQYPRRTE----------------------LTSFKEVQASQVALS 523

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
                       +  + +    +    S +  +L  S  G+     V             
Sbjct: 524 NLSLAYDPESGFLGTQVKTSAENRLACSEYDKILLISRSGWYKVVAVPD---------KI 574

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            + + L         TI      + + N  YV   T    +   +   F +  RS  + +
Sbjct: 575 FVGHDLKWWGKAADKTIFNLVYRDGAQNLCYVKRFTTPKFILDKEYRLFAEHRRSEILFL 634

Query: 677 KLDSR 681
           K  S 
Sbjct: 635 KTGSG 639


>gi|213024898|ref|ZP_03339345.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 161

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 101/161 (62%), Positives = 126/161 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K 
Sbjct: 1   GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKI 60

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL EV
Sbjct: 61  AHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 120

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
           ++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ 
Sbjct: 121 INGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEE 161


>gi|77166864|gb|ABA62408.1| DNA gyrase subunit A [Simkania negevensis]
          Length = 152

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/152 (53%), Positives = 111/152 (73%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
             DEM+ SYL Y+++VI+ RA+PD+RDGLKP  RR+LF M Q+ +    K+ KCA+I G+
Sbjct: 1   FEDEMKESYLRYSMSVIISRALPDVRDGLKPSQRRVLFAMRQLNLSPGAKHRKCAKICGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
             G YHPHG   IY  L RMAQDW +   L++GQGNFGS+DGDPPAA RYTE RL +A+ 
Sbjct: 61  TSGDYHPHGETVIYPTLVRMAQDWVMGYCLVQGQGNFGSIDGDPPAAMRYTEARLTRASM 120

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            L++DL K+TV++ PNY+ + QEP V  +++P
Sbjct: 121 ALMEDLDKETVEYVPNYNETKQEPTVFPSKFP 152


>gi|260100984|gb|ACX31657.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 135

 Score =  295 bits (754), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/135 (61%), Positives = 109/135 (80%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDGSFQ 162
           K+TVDF  N+DG+ +
Sbjct: 121 KETVDFVDNHDGTEK 135


>gi|190888608|gb|ACE95929.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888610|gb|ACE95930.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888614|gb|ACE95932.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888616|gb|ACE95933.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888624|gb|ACE95937.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888626|gb|ACE95938.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888628|gb|ACE95939.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888632|gb|ACE95941.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888634|gb|ACE95942.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888636|gb|ACE95943.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888640|gb|ACE95945.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888648|gb|ACE95949.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888650|gb|ACE95950.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888652|gb|ACE95951.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/150 (52%), Positives = 106/150 (70%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA  +I  RA+PD+RDGLKPV RRIL+GM  +G+ +NK Y K A   GEV+GK+HPHG++
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYTE RL    + +L+++ K+TV
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           +F  N+D S  EP +L +  PN+LVNG  G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|313192107|emb|CBX19913.1| gyrase A [Clostridium perfringens]
          Length = 250

 Score =  294 bits (753), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 137/251 (54%), Positives = 190/251 (75%), Gaps = 1/251 (0%)

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMAT
Sbjct: 1   RYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMAT 60

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G I
Sbjct: 61  NIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRI 120

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           V+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G 
Sbjct: 121 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 179

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++V
Sbjct: 180 RMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDV 239

Query: 369 VVRRTKYLLNK 379
           + RRT++ LNK
Sbjct: 240 ITRRTQFELNK 250


>gi|308813249|ref|XP_003083931.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
 gi|116055813|emb|CAL57898.1| DNA gyrase A subunit (ISS) [Ostreococcus tauri]
          Length = 475

 Score =  293 bits (750), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 87/156 (55%), Positives = 114/156 (73%), Gaps = 1/156 (0%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRILFGM ++G+  +K + KCAR+ G+V+GK+HPHG+ A+Y+AL R+AQD+S+   
Sbjct: 32  KPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSAP 91

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAH-FLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           L++G GNFGS+D DPPAA RYTECRL K +   LL D+  + V F   +DGS  EP VL 
Sbjct: 92  LVDGHGNFGSLDDDPPAAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEVLP 151

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           AR PN+L+NG  GIAV +ATN+  HNLGE + G   
Sbjct: 152 ARVPNLLINGSSGIAVAVATNMAPHNLGEALSGRSH 187



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 93/272 (34%), Positives = 144/272 (52%), Gaps = 27/272 (9%)

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            G RVVIE+KRG  A  +L +LY+ T L+  ++VN VAL G KP    L  +L  F+ FR
Sbjct: 204 DGMRVVIEIKRGHDASTVLAELYKKTRLEVNYNVNNVALVGNKPTVMPLRDMLDEFIKFR 263

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            + + RRT+++L KA+DR H++ G A  + + D VV+IIR S +  +A ++L ++     
Sbjct: 264 VDTIERRTRFMLGKAQDRKHLVEGFAFVLTDADGVVKIIRGSKDGPSAAKKLREKH---- 319

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                                  LSE+Q+ AIL + L RLTGL  D +  EL  L  +I+
Sbjct: 320 ----------------------GLSEIQSDAILAMPLRRLTGLEADKLDAELKDLNGQIE 357

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG-LLDMEDEDCIVREDMVVTVSH 544
               +L+ +S+++ ++ QE    K      RRT + +    D   ED    +D ++T+S 
Sbjct: 358 YYQGLLNDKSKVIDVLIQEAQEAKTAFARERRTTLEQTGPSDGVIEDEGPPKDNIITLSE 417

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDF 576
            GYVKRV  + + AQ RG +G+    +R  D 
Sbjct: 418 RGYVKRVCPTNFGAQARGTRGKRMSKLRANDE 449


>gi|219815933|gb|ACL37053.1| GyrA [Salmonella enterica]
          Length = 135

 Score =  293 bits (750), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 83/134 (61%), Positives = 109/134 (81%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 2   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 61

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 62  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 121

Query: 141 FLLDDLGKDTVDFR 154
            L+ DL K+TVDF 
Sbjct: 122 ELMADLEKETVDFV 135


>gi|328947272|ref|YP_004364609.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
 gi|328447596|gb|AEB13312.1| DNA topoisomerase (ATP-hydrolyzing) [Treponema succinifaciens DSM
           2489]
          Length = 659

 Score =  293 bits (749), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 139/652 (21%), Positives = 252/652 (38%), Gaps = 72/652 (11%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +    +++ YA  VI  RAIPDL DGLKPV RRI   M  +    + +  K A + G+
Sbjct: 4   IKNLFDKNFIEYASYVIRDRAIPDLEDGLKPVQRRI---MHTLFNIDDGRMHKVASVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKAA 139
            M K+HPHG+A+I  AL  +A     + + I+ QGNFG++  GD  +A RY EC +   A
Sbjct: 61  CM-KFHPHGDASIGAALVVLA----NKEIFIQRQGNFGNLYTGDTASASRYIECCVHPLA 115

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
              L     +  ++ P+YDG  +EPV   A+ P VL+ G  GIAVGM+T I  +N+ EV+
Sbjct: 116 KKFLY--NPNITEYVPSYDGRSKEPVAFRAKIPVVLLGGAEGIAVGMSTKILPYNIKEVL 173

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           D  +  +     ++         PD PTG ++       + Y  G G I+ R    +   
Sbjct: 174 DAEIKALRGEPFEIY--------PDSPTGGLMD-----VSNYNDGNGKIITRAKFDLSDE 220

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                 IV+TE+P +     +L+ I    +  +I   +     +D     + I+L RG  
Sbjct: 221 KK----IVITELPLETTSKDLLDSIDAAYKAGKIKISSVEDFTTDH--CNIEIKLPRGVY 274

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
           +  +   LY YTS +   +  M+ +    P   T   I+K +      ++    ++    
Sbjct: 275 SKDVEKALYAYTSCEKSIACQMLVIKDNMPVAMTATEIIKYYAKKLTGIIKDELEFERGS 334

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             +  H      I +   + + + I      E+  +                  + D   
Sbjct: 335 LTEELHQRTLERIFIE--ERIYKSIEQMKTAESVNKA-----------------VKDGFV 375

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               +    +++     +L++ + R++    +  R+++ ++   +KE    L   +    
Sbjct: 376 PFKDELIRDVTDEDVEKLLKIPIRRISLFDINKNRDQVKAINERLKEIARRLKHLTDCAV 435

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQ 559
                +L    +         ++   D       + E      S      +  +      
Sbjct: 436 EYLDGILDELKKFS------ALDPKQDHTAISPALLERQTKITSFSAVDVKQIVQRDTPL 489

Query: 560 RRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI 619
           R   KG  G  +        +  V+    +L     G      V  +P       G    
Sbjct: 490 RYDEKGYLGTSVNGGRE---ILKVTPFDRILIVRKSGLW---SVCDVPDKLFVDSGIWFC 543

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRS 671
           N    +   +I   + + + +           TK+  ++R ++S +I     
Sbjct: 544 NYADKDIISKILFTIIYRDPK-----------TKYCFIKRCRISGWIMNRDY 584


>gi|219923480|emb|CAQ86602.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/139 (61%), Positives = 108/139 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTHNLGEVVDG 201
           AVGMATNIP HNL EV++G
Sbjct: 121 AVGMATNIPPHNLTEVING 139


>gi|190888606|gb|ACE95928.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888612|gb|ACE95931.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888618|gb|ACE95934.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888620|gb|ACE95935.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888622|gb|ACE95936.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888630|gb|ACE95940.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888638|gb|ACE95944.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888642|gb|ACE95946.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888644|gb|ACE95947.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888646|gb|ACE95948.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
 gi|190888654|gb|ACE95952.1| topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 151

 Score =  292 bits (748), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/150 (52%), Positives = 105/150 (70%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA  +I  RA+PD+RDGLKPV RRIL+GM  +G+ +NK Y K A   GEV+GK+HPHG+ 
Sbjct: 2   YAKYIIQERALPDIRDGLKPVQRRILYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDL 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYTE RL    + +L+++ K+TV
Sbjct: 62  SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYTEARLSHYGNLMLENINKETV 121

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           +F  N+D S  EP +L +  PN+LVNG  G
Sbjct: 122 NFVNNFDDSEVEPTILPSLLPNLLVNGSTG 151


>gi|145286586|gb|ABP52100.1| topoisomerase IV subunit ParC [Streptococcus pyogenes]
          Length = 147

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 79/147 (53%), Positives = 106/147 (72%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
            +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IY
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVPFA 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
            N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|294992569|gb|ADF57411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  292 bits (747), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 110/133 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|260100989|gb|ACX31659.1| DNA gyrase subunit A [Salmonella enterica]
          Length = 132

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRPNYDG 159
           K+TVDF  N+DG
Sbjct: 121 KETVDFVDNHDG 132


>gi|47419990|gb|AAT27347.1| DNA gyrase A [Campylobacter coli]
          Length = 500

 Score =  292 bits (746), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 178/583 (30%), Positives = 299/583 (51%), Gaps = 116/583 (19%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT
Sbjct: 3   LKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRT 62

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +             
Sbjct: 63  IFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------- 109

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S
Sbjct: 110 -------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKS 156

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + L  +I+ EL  +K + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP 
Sbjct: 157 ETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPS 216

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
             Y  Q+RGGKG+  V   D+DF+   F  +TH +++F       +  KV+++P GS  A
Sbjct: 217 KQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVLIE-DSFMVKVYKIPEGSRTA 275

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +GKA++N+++L   E+I  I+P  + +    N  + F TK+G V+R  LS++  I   G 
Sbjct: 276 KGKAVVNLINLQADEKIMAIIPTTDFD---ENKSLCFFTKNGIVKRTNLSEYQNIRSVGV 332

Query: 674 IAMKLDSRDEILSVETCTQEND------------------------------ILLTTKLG 703
            A+ LD  DE+++     ++ +                              +   TK G
Sbjct: 333 KAINLDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKG 392

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQR 762
            C++FP++ +R   GR S GV  I   +  D+++   ++ + +                 
Sbjct: 393 MCIKFPLAKVREI-GRVSRGVTAIKFKEKNDELVGAVVIENDE----------------- 434

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                                              Q IL++S KG GKRT++ ++R+ +R
Sbjct: 435 -----------------------------------QEILSISAKGIGKRTNAGEYRLQSR 459

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
            GKG+    ++  ++   L++V  V+++  ++ ++  G +IRV
Sbjct: 460 GGKGVICMKLT--DKTKELISVVIVDESMDLMALTSSGKMIRV 500



 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 113/322 (35%), Gaps = 79/322 (24%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 49  LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---TTARDS 105

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 106 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 159

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    + +    +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 160 LENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 219

Query: 818 RISNRSGKG----------------------------------IRATDVSKINEIGA--- 840
               R GKG                                  ++   + + +       
Sbjct: 220 EKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVLIEDSFMVKVYKIPEGSRTAKGKA 279

Query: 841 LVAVFPVNDNDQIILV---------------SDKGTLIRVPVNE---IRIASRATKGVVI 882
           +V +  +  +++I+ +               +  G + R  ++E   IR       GV  
Sbjct: 280 VVNLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSV-----GVKA 334

Query: 883 FSTAKDERVVSVERIRESEIVD 904
            +  +++ +V+   ++  E  +
Sbjct: 335 INLDENDELVTAIIVQRDENEE 356


>gi|294992577|gb|ADF57415.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  291 bits (744), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/133 (61%), Positives = 110/133 (82%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           +F+ NYDGS +EP
Sbjct: 121 NFQDNYDGSEREP 133


>gi|260100991|gb|ACX31660.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  290 bits (743), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/131 (62%), Positives = 107/131 (81%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDG 159
           +TVDF  N+DG
Sbjct: 121 ETVDFVDNHDG 131


>gi|99035108|ref|ZP_01314894.1| hypothetical protein Wendoof_01000268 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 146

 Score =  290 bits (743), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/145 (61%), Positives = 116/145 (80%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +SI  E+++SYL+YA++VI+ RAIPD+RDG KPVHRRIL+ M + G +  K Y 
Sbjct: 2   QDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYK 61

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGDPPA+ RYTE
Sbjct: 62  KAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYTE 121

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY 157
            RLQK +HFLL+D+ ++TV +   Y
Sbjct: 122 ARLQKVSHFLLNDIDENTVRYLATY 146


>gi|297242243|gb|ADI24794.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 93/183 (50%), Positives = 128/183 (69%), Gaps = 4/183 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG 
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179

Query: 248 IVI 250
             +
Sbjct: 180 HTV 182


>gi|294992573|gb|ADF57413.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  290 bits (742), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG++
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|86279131|gb|ABC88665.1| DNA gyrase A [Ornithobacterium rhinotracheale]
          Length = 136

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 83/136 (61%), Positives = 108/136 (79%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+GM +MG+  N+ Y K AR+ GEVMGK+HPHG++++YD + RMAQDWS+R +L+
Sbjct: 1   VHRRVLYGMNEMGLLSNRGYKKSARVVGEVMGKFHPHGDSSVYDTMVRMAQDWSMRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           +GQGNFGSVDGDPPAA RYTE R+QK +  +L D+ K+TVD + N+D +  EP VL  R 
Sbjct: 61  DGQGNFGSVDGDPPAAMRYTEARMQKISEEMLADIDKETVDQKLNFDDTLYEPTVLPTRI 120

Query: 172 PNVLVNGGGGIAVGMA 187
           PN+LVNG  GIAVGMA
Sbjct: 121 PNLLVNGAAGIAVGMA 136


>gi|284154626|gb|ADB78414.1| DNA gyrase [Bacillus amyloliquefaciens]
          Length = 189

 Score =  290 bits (741), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 108/189 (57%), Positives = 143/189 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           ++A+Y+++ RMAQD++ R +L++G GNFGSVDGD  AA RYTE R+ K +  +L D+ KD
Sbjct: 1   DSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +NP
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENP 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ A  +GRGSI  R  + IE TS  +E+I VT
Sbjct: 121 DITIPELMEVIPGPDFPTAGQILGRSGIRXAXESGRGSITXRAKAEIEXTSSGKERIXVT 180

Query: 270 EIPYQVNKA 278
           E P  V KA
Sbjct: 181 EFPXXVXKA 189


>gi|297242221|gb|ADI24783.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242255|gb|ADI24800.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 127/179 (70%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   L+ ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242219|gb|ADI24782.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  290 bits (741), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 127/179 (70%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   L+ ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLNDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|294992575|gb|ADF57414.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDF 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|33469560|gb|AAQ19805.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 149

 Score =  290 bits (741), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/149 (52%), Positives = 107/149 (71%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           +  +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++
Sbjct: 1   SKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           IY+A+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV 
Sbjct: 61  IYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVS 120

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           F  N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 FAWNFDDTEKEPTVLPAAFPNLLVNGSSG 149


>gi|297242227|gb|ADI24786.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242253|gb|ADI24799.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242267|gb|ADI24806.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242289|gb|ADI24817.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 92/183 (50%), Positives = 129/183 (70%), Gaps = 4/183 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG 
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179

Query: 248 IVI 250
             +
Sbjct: 180 HTV 182


>gi|33469562|gb|AAQ19806.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 146

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/146 (55%), Positives = 106/146 (72%)

Query: 36  VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
           +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+A+IYD
Sbjct: 1   IIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDASIYD 60

Query: 96  ALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  
Sbjct: 61  AMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAW 120

Query: 156 NYDGSFQEPVVLCARYPNVLVNGGGG 181
           N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 NFDDTEKEPTVLPAAFPNLLVNGSSG 146


>gi|260100986|gb|ACX31658.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 131

 Score =  289 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/131 (62%), Positives = 106/131 (80%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           YL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPH
Sbjct: 1   YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  GDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEK 120

Query: 149 DTVDFRPNYDG 159
           +TVDF  N+DG
Sbjct: 121 ETVDFVDNHDG 131


>gi|219923482|emb|CAQ86603.1| gyrase subunit A [Klebsiella oxytoca]
          Length = 139

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/135 (62%), Positives = 104/135 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD
Sbjct: 2   GNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 62  SAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIA 121

Query: 184 VGMATNIPTHNLGEV 198
           VGMATNIP HNL EV
Sbjct: 122 VGMATNIPPHNLTEV 136


>gi|297242265|gb|ADI24805.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/182 (51%), Positives = 130/182 (71%), Gaps = 4/182 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K A  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRGS+
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179

Query: 249 VI 250
           ++
Sbjct: 180 IV 181


>gi|297242237|gb|ADI24791.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242299|gb|ADI24822.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDILEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|294992571|gb|ADF57412.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp.
           equisimilis]
          Length = 133

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/133 (62%), Positives = 109/133 (81%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ 
Sbjct: 1   YAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKPHKKSARITGDVMGKYHPHGDY 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+ K+TV
Sbjct: 61  SIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTV 120

Query: 152 DFRPNYDGSFQEP 164
           DF+ NYDGS +EP
Sbjct: 121 DFQDNYDGSEREP 133


>gi|297242281|gb|ADI24813.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/178 (51%), Positives = 126/178 (70%), Gaps = 2/178 (1%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAER 129
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G S D    AA R
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 61  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 120

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 121 IPPHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242305|gb|ADI24825.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242271|gb|ADI24808.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242293|gb|ADI24819.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242269|gb|ADI24807.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242225|gb|ADI24785.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242231|gb|ADI24788.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242235|gb|ADI24790.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  289 bits (739), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 128/179 (71%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242259|gb|ADI24802.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242261|gb|ADI24803.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  288 bits (738), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 92/179 (51%), Positives = 127/179 (70%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242245|gb|ADI24795.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242263|gb|ADI24804.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  288 bits (737), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/182 (50%), Positives = 131/182 (71%), Gaps = 4/182 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRGS+
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179

Query: 249 VI 250
           ++
Sbjct: 180 IV 181


>gi|260100980|gb|ACX31655.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Panama]
          Length = 128

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 81/128 (63%), Positives = 105/128 (82%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120

Query: 147 GKDTVDFR 154
            K+TVDF 
Sbjct: 121 EKETVDFV 128


>gi|313192109|emb|CBX19914.1| gyrase A [Clostridium perfringens]
          Length = 228

 Score =  287 bits (735), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 129/227 (56%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIA
Sbjct: 1   SAAAMRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIA 60

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
           VGMATNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY T
Sbjct: 61  VGMATNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYET 120

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G+G IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDES
Sbjct: 121 GKGRIVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDES 179

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE 350
           DR+G R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+
Sbjct: 180 DREGMRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQ 226


>gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 622

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 159/613 (25%), Positives = 280/613 (45%), Gaps = 70/613 (11%)

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           ++ L   TVDF P Y+G  +EP ++   +PN+L NG  GIAVGMATNIP+HN+ EV+D  
Sbjct: 1   MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA-YATGRGSIVIRGVSH------ 255
           + +IDNP ++ + LME++ GPDF TG  ++    + +  Y TGRGS  +RGV H      
Sbjct: 61  LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120

Query: 256 -------IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
                  IE+  G + Q+V++EIPYQV K  ++E+IA+ + +K++  + D+RDESD    
Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPER-FTLIGILKAFVAFREE 367
            V++   R    D++   +++ T +++ F +NM  L+  +      L  +L+ + A + E
Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           ++ RRT+Y L +   R  ++ G  +A  NLD V+ IIR+   P+                
Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEPKA--------------- 285

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                L++ Q  AIL +RL  L  L   +++ E + L  E +E 
Sbjct: 286 --------------VMMAEFSLTDRQAEAILNMRLRSLRKLEEMELKQEKSELLAEQEEL 331

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVE--GLLDMEDEDCIVREDMVV 540
             +L S +R    +K++L +++ +         RRTRI E    ++   +  I +E + V
Sbjct: 332 NKLLESPARQRTRLKKDLRALRKDYAEDTALGARRTRIEEAAPAVEFSMDAMIEKEPVTV 391

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        RA +           ++ D +  +    T   +L   S G  Y 
Sbjct: 392 ILSQKGWI--------RAAKGHVDLAQEFKYKEGDALAFILHAQTTDKLLIAGSDGRFYT 443

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
               +LP       G+ +  ++ L    +I  +M             ++ A+  G     
Sbjct: 444 LGADKLPGARGF--GEPVRTMIDLPAETQIAAMM------VHKEGGKLLLASSIGKGFIA 495

Query: 661 KLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
           +  + +   + GK  + L    ++ +  E     + +    +  + + F +  + V A  
Sbjct: 496 ETKELLAETKKGKQVVNLKGDAKLQVIREVPENHDHVAAVGENRKLIVFNLEEMPVMA-- 553

Query: 720 NSVGVRGISLAKG 732
              GV       G
Sbjct: 554 RGQGVMLQRYRDG 566


>gi|11863195|gb|AAD43672.2| topoisomerase IV subunit A [Staphylococcus hominis subsp. hominis]
          Length = 143

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 106/143 (74%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|297568941|ref|YP_003690285.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924856|gb|ADH85666.1| DNA topoisomerase (ATP-hydrolyzing) [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 660

 Score =  287 bits (734), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 148/667 (22%), Positives = 262/667 (39%), Gaps = 89/667 (13%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           ++      +++ Y   VI  RAIPDL DGLKPV RRIL  +       + ++ K A + G
Sbjct: 8   NLHKLFDENFIDYTSYVIRERAIPDLADGLKPVQRRILQTLH---NVDDGRFHKVANVVG 64

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTECRLQKA 138
           E M K HPHG+A+I+ AL  +A   +    L++ QGNFG++  GD  +A RY ECRL   
Sbjct: 65  ETM-KLHPHGDASIFSALVNLA---NKGY-LVDRQGNFGNIYTGDSASAARYIECRLTPL 119

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   +    ++  +F  +YDG  +EPV L A+ P +L+ G  GIAVGMAT I  HN  E+
Sbjct: 120 ARETM--FNRELTEFTDSYDGRMKEPVSLPAKLPLLLLQGAEGIAVGMATKIMPHNFCEL 177

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +     ++   +  +         PDF  G ++       +AY  G G +  R     + 
Sbjct: 178 LQAQKKILQGEEFAVY--------PDFYQGGLLD-----VSAYDDGNGRLRCRARIEEKD 224

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  I++ EIP+  N   ++E + +  R  +   ++   ++   +   + I+L RG 
Sbjct: 225 DK----TIIIREIPFGTNTQGLIESVEKAARAGKFKILS--INDYTAEEVEIEIKLARGL 278

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+  +  LY +T  +   S N   +    P   ++  +L+   +    ++ +  +  L 
Sbjct: 279 KAEETIKALYAFTDCELAISPNFTVIRDRNPVILSVSEVLRENTSRLYNLLEKELQLELA 338

Query: 379 KARD--RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           + ++  +AH L  + I                        L ++       + +I  ID+
Sbjct: 339 RLKERLQAHQLERIFI---------------------EERLYKQIEECPSFELVIKTIDE 377

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
           +     ++    +S      +LE+++ R++    +  + E+ +   +IKE    L     
Sbjct: 378 ALKPYTAELVRPVSREDIEKLLEIKIKRISRYDIERKKKEIKATLRQIKEVEKNLRD--- 434

Query: 497 LLGIIKQELLSVKDEL--DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + G   + L  +      D PRRT +         +         V +S+L         
Sbjct: 435 MTGYCIRFLDDLLARYGGDYPRRTELTTFAGVQASQ---------VALSNLTIGYDRESG 485

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            +  Q + G   S                S +  +L     G+     V          +
Sbjct: 486 FFGTQVKAGADNSLA-------------CSEYDKILLIDKSGWYKVINV--------PEK 524

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
                ++L   +     T      D          F T    V + +   F +  RS  I
Sbjct: 525 IFIGHDLLWWGRVADRQTFNMVYRDGKQNLCYLKRFVTPKFIVDK-EYRLFAEQRRSEII 583

Query: 675 AMKLDSR 681
            +K    
Sbjct: 584 FLKTGEG 590


>gi|146231451|gb|ABQ12873.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 147

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/147 (53%), Positives = 105/147 (71%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
            +I  RA+PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IY
Sbjct: 1   YIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           DA+ RM+Q+W  R +L+E  GN GS+DGDPPA  RYTE RL + A +LL D+ K+TV F 
Sbjct: 61  DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAVMRYTEARLSEIAGYLLQDIEKNTVSFA 120

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGG 181
            N+D + +EP VL A +PN+LVNG  G
Sbjct: 121 WNFDDTEKEPTVLPAAFPNLLVNGSSG 147


>gi|11863191|gb|AAD43664.2| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 143

 Score =  287 bits (733), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 106/143 (74%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  LL D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+L+NG  GI+ G AT+IP
Sbjct: 121 ARFPNLLINGSTGISSGYATDIP 143


>gi|297242257|gb|ADI24801.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  286 bits (732), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 92/182 (50%), Positives = 131/182 (71%), Gaps = 4/182 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARAVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRGS+
Sbjct: 120 IPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179

Query: 249 VI 250
           ++
Sbjct: 180 IL 181


>gi|219920965|emb|CAQ76660.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 137

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/137 (60%), Positives = 104/137 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYNTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           VDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG 
Sbjct: 61  VDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGS 120

Query: 180 GGIAVGMATNIPTHNLG 196
            GIAVGMATNIP HNL 
Sbjct: 121 SGIAVGMATNIPPHNLT 137


>gi|313192115|emb|CBX19917.1| gyrase A [Clostridium perfringens]
          Length = 242

 Score =  286 bits (732), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 131/241 (54%), Positives = 181/241 (75%), Gaps = 1/241 (0%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMA
Sbjct: 3   MRYTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMA 62

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G 
Sbjct: 63  TNIPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGR 122

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           IV+R  + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G
Sbjct: 123 IVVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREG 181

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ F+++
Sbjct: 182 MRMVIELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKD 241

Query: 368 V 368
           V
Sbjct: 242 V 242


>gi|15836248|ref|NP_300772.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae J138]
 gi|8979088|dbj|BAA98923.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138]
          Length = 478

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 180/390 (46%), Gaps = 35/390 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA---NKGY-LIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 ARETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    +         PDFP+G ++       + Y  G GSI +R    I  
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLMDP-----SEYQDGLGSITLRASIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +VV +I  Q     ++  I    +   I         +D     + I+L +G+
Sbjct: 220 DK----TLVVKQICPQSTTETLIRSIENAAKRGTIKIDTIQDFSTDVP--HIEIKLPKGS 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV-----VVRRT 373
            A  +L  L+ +T  Q +       +   KP   ++  ILK      +       ++ + 
Sbjct: 274 RAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILKLHTTALQGYLEKELLLLQE 333

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +  L+        +        ++ EV+ I
Sbjct: 334 QLTLDHYHKTLEYIFIKHKLYDSVREVLAI 363


>gi|297242229|gb|ADI24787.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/178 (51%), Positives = 127/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|269302504|gb|ACZ32604.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pneumoniae
           LPCoLN]
          Length = 478

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 123/505 (24%), Positives = 213/505 (42%), Gaps = 44/505 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA---NKGY-LIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 ARETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    +         PDFP+G ++       + Y  G GSI +R    I  
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLMDP-----SEYQDGLGSITLRASIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +VV +I  Q     ++  I    +   I         +D     + I+L +G+
Sbjct: 220 DK----TLVVKQICPQSTTETLIRSIENAAKRGTIKIDTIQDFSTDVP--HIEIKLPKGS 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +L  L+ +T  Q +       +   KP   ++  ILK      +  + +    L  
Sbjct: 274 RAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILKLHTTALQGYLEKELLLLQE 333

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +     H             E + I     +       + ++       + ++  ++   
Sbjct: 334 QLTLDHH---------HKTLEYIFIKHKLYDSVREALAINKKISADDLHQAVLHALEPWL 384

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           + + +     +++  T  +  L + ++     +    EL ++  +       L     + 
Sbjct: 385 HELAT----PVTKQDTSQLASLTIKKILCFNEEACTKELLAIEKKQAAIQKDLGRIKEVT 440

Query: 499 GIIKQELLSVKDELDTPRRTRIVEG 523
               + LL  +      R+T+I   
Sbjct: 441 VKYLKGLLE-RHGHLGERKTQITNF 464


>gi|15618626|ref|NP_224912.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae CWL029]
 gi|16752324|ref|NP_444582.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae AR39]
 gi|33242075|ref|NP_877016.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
 gi|4377020|gb|AAD18855.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029]
 gi|7188969|gb|AAF37925.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39]
 gi|33236585|gb|AAP98673.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183]
          Length = 478

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 180/390 (46%), Gaps = 35/390 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFRTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFLMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA---NKGY-LIDTQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 ARETL--FNTDLIAFHDSYDGREKEPDILPAKLPVLLLHGVDGIAVGMTTKIFPHNFAEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    +         PDFP+G ++       + Y  G GSI +R    I  
Sbjct: 173 LKAQIAILNDKKFTV--------FPDFPSGGLMDP-----SEYQDGLGSITLRASIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +VV +I  Q     ++  I    +   I         +D     + I+L +G+
Sbjct: 220 DK----TLVVKQICPQSTTETLIRSIENAAKRGTIKIDTIQDFSTDVP--HIEIKLPKGS 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV-----VVRRT 373
            A  +L  L+ +T  Q +       +   KP   ++  ILK      +       ++ + 
Sbjct: 274 RAKEMLPLLFEHTECQVILYSKPTVIYENKPVECSISEILKLHTTALQGYLEKELLLLQE 333

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRI 403
           +  L+        +        ++ EV+ I
Sbjct: 334 QLTLDHYHKTLEYIFIKHKLYDSVREVLAI 363


>gi|260100978|gb|ACX31654.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 128

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/128 (62%), Positives = 104/128 (81%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL 
Sbjct: 61  HGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLE 120

Query: 148 KDTVDFRP 155
           K+TVDF  
Sbjct: 121 KETVDFVD 128


>gi|219815939|gb|ACL37056.1| GyrA [Salmonella enterica]
          Length = 130

 Score =  285 bits (730), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 106/130 (81%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH 
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 142 LLDDLGKDTV 151
           L+ DL K+TV
Sbjct: 121 LMADLEKETV 130


>gi|297242303|gb|ADI24824.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/179 (50%), Positives = 127/179 (70%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y K  R  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKKSGRTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242297|gb|ADI24821.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/182 (50%), Positives = 128/182 (70%), Gaps = 4/182 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG  
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGGH 179

Query: 249 VI 250
            +
Sbjct: 180 TV 181


>gi|11967832|emb|CAC19422.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 136

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 106/130 (81%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAHFLLD 144
           L K AH L+ 
Sbjct: 127 LAKIAHELMA 136


>gi|148985115|ref|ZP_01818354.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
 gi|147922560|gb|EDK73678.1| DNA gyrase subunit A [Streptococcus pneumoniae SP3-BS71]
          Length = 141

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/138 (55%), Positives = 111/138 (80%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K + +V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 2   QDKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 62  KKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYT 121

Query: 132 ECRLQKAAHFLLDDLGKD 149
           E R+ K A  +L D+ K 
Sbjct: 122 EARMSKIALEMLRDINKK 139


>gi|237743166|ref|ZP_04573647.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
 gi|229433462|gb|EEO43674.1| DNA gyrase subunit A [Fusobacterium sp. 7_1]
          Length = 379

 Score =  285 bits (729), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 135/437 (30%), Positives = 229/437 (52%), Gaps = 60/437 (13%)

Query: 471 DDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
           + I  E   +   IKE  ++L   +++  I+K+ELL +K++    RRT+I E  +++  E
Sbjct: 1   EKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYADKRRTKIEEERMEILPE 60

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D I  E++++T ++ GYVKR+  S Y+AQRRGGKG S +   ++D+   +   ST  +++
Sbjct: 61  DLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSALNTIEDDYAEKITSASTLDTIM 120

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
            F+  G VY  + + +P  S Q+RG+ L NI++L++GE++   +   E         VVF
Sbjct: 121 VFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEKVRDTIVIKEFLPEKE---VVF 177

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
            TK+G +++  L +F  IN SG IA+K    D+I+ V       + +IL+ T  G C RF
Sbjct: 178 ITKNGLIKKTSLGEFKNINNSGLIAIKTKEDDDIIFVGLIEDVNKEEILIATHDGYCTRF 237

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
               IR   GR++ GV+ I+L KGD V+S  ++ +                         
Sbjct: 238 LTDTIRA-TGRSTQGVKAITLRKGDMVVSAMLIKN------------------------- 271

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                       E  ILT++E G+GKRTS  ++   NR GKG+ 
Sbjct: 272 ---------------------------PETDILTITENGYGKRTSLDEYPQYNRGGKGVI 304

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              V++ N  G +V+V  V+++++++ ++  G +IR  +NEI    RAT+GV I   A D
Sbjct: 305 NLKVNEKN--GKVVSVLEVSEDEELMCITSNGIVIRTSINEISRIGRATQGVRIMKVADD 362

Query: 889 ERVVSVERIRESEIVDE 905
           E+V ++ +I++ E ++ 
Sbjct: 363 EKVAAITKIKKEEDLEN 379


>gi|255349048|ref|ZP_05381055.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70]
 gi|255503586|ref|ZP_05381976.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 70s]
 gi|255507266|ref|ZP_05382905.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D(s)2923]
          Length = 490

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 133/513 (25%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP VL A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDVLAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP+G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSL--------FPDFPSGGTMD-----ASDYQAGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 HAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+       +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|297242301|gb|ADI24823.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/178 (51%), Positives = 127/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242241|gb|ADI24793.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242247|gb|ADI24796.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242279|gb|ADI24812.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/178 (51%), Positives = 127/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242223|gb|ADI24784.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242295|gb|ADI24820.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  285 bits (728), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 91/178 (51%), Positives = 127/178 (71%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   QKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|7262517|dbj|BAA92798.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  284 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/139 (61%), Positives = 109/139 (78%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 192 THNLGEVVDGCVAVIDNPD 210
            HNL EV++GC+A ID+ D
Sbjct: 121 PHNLTEVINGCLAYIDDED 139


>gi|297242283|gb|ADI24814.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242287|gb|ADI24816.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/176 (51%), Positives = 125/176 (71%), Gaps = 2/176 (1%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG-SVDGDPPAAERYT 131
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G S D    AA RYT
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGASDDPKSFAAMRYT 61

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP
Sbjct: 62  ESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIP 121

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
            HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 122 PHNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242273|gb|ADI24809.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242291|gb|ADI24818.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/177 (51%), Positives = 127/177 (71%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|297242251|gb|ADI24798.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  284 bits (727), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 91/177 (51%), Positives = 127/177 (71%), Gaps = 4/177 (2%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 2   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+I
Sbjct: 61  TESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDI 120

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           P HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 121 PPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|77166862|gb|ABA62407.1| DNA gyrase subunit A [Neochlamydia hartmannellae]
          Length = 147

 Score =  284 bits (726), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 83/147 (56%), Positives = 108/147 (73%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +EM++SYL Y+++VI+ RA+PD+RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+ 
Sbjct: 1   EEEMKDSYLRYSMSVIISRALPDVRDGLKPSQRRILYAMRQLNLSPGAKHRKCAKISGDT 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G YHPHG   IY  L RMAQ+W +R  LI+GQGNFGS+DGDPPAA RY+E RL  A+  
Sbjct: 61  SGDYHPHGEMVIYPTLVRMAQNWVMRYSLIDGQGNFGSIDGDPPAAMRYSEARLTHASMQ 120

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           L+ DL K+TVD  PNYD + +EPVV  
Sbjct: 121 LMKDLDKETVDHVPNYDETKKEPVVFP 147


>gi|11245231|gb|AAG33513.1|AF302676_1 topoisomerase II [Enterobacter cloacae]
          Length = 135

 Score =  283 bits (725), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 81/134 (60%), Positives = 106/134 (79%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD     RYTE R+ K AH L+ DL
Sbjct: 61  PHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAGVMRYTEIRMSKIAHELMADL 120

Query: 147 GKDTVDFRPNYDGS 160
            K+T DF  NY+G+
Sbjct: 121 EKETDDFVDNYNGT 134


>gi|11863193|gb|AAD43671.2| topoisomerase IV subunit A [Staphylococcus hominis]
 gi|12585588|gb|AAG49419.1| topoisomerase IV subunit A [Staphylococcus hominis subsp.
           novobiosepticus]
          Length = 143

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 78/143 (54%), Positives = 105/143 (73%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDFSVYDAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVSFIPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISAGYATDIP 143


>gi|34451797|gb|AAQ72394.1| GyrA [Klebsiella variicola]
 gi|34451799|gb|AAQ72395.1| GyrA [Klebsiella variicola]
 gi|34451801|gb|AAQ72396.1| GyrA [Klebsiella variicola]
 gi|34451809|gb|AAQ72400.1| GyrA [Klebsiella variicola]
 gi|34451811|gb|AAQ72401.1| GyrA [Klebsiella sp. 910]
          Length = 131

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 102/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|297242239|gb|ADI24792.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
 gi|297242285|gb|ADI24815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/179 (50%), Positives = 127/179 (70%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y   AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|297242217|gb|ADI24781.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  283 bits (725), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 91/179 (50%), Positives = 127/179 (70%), Gaps = 4/179 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y   AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YKISARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 178


>gi|255030145|ref|ZP_05302096.1| DNA gyrase subunit A [Listeria monocytogenes LO28]
          Length = 519

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 163/515 (31%), Positives = 266/515 (51%), Gaps = 33/515 (6%)

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L GL
Sbjct: 1   TALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEGL 60

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            IA+ N+D ++++IR S   + A+  LM +                            LS
Sbjct: 61  RIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------------------------FNLS 94

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           + Q +AIL++RL RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K 
Sbjct: 95  DKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKV 154

Query: 511 ELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
           +    RRT I+ G L   EDED I  E++ +T++  GY+KR+PLS YR+QRRGG+G  G+
Sbjct: 155 KYADKRRTEILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGM 214

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGER 629
              ++DFV  L   STH ++LFF++ G VY+ K + +P     A+G  +IN+L +   E+
Sbjct: 215 STHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQ 274

Query: 630 ITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVET 689
           +  ++   E     ++ Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+ 
Sbjct: 275 VNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQM 331

Query: 690 CTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
                ++++ TK GQ + FP   IRV  GR + GVRGI L + D+VI M ++   +    
Sbjct: 332 TDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIRLREDDEVIGMEVLEDDEKVLV 390

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
                    +   +    +   +       + +             ++  ++TVS  G  
Sbjct: 391 VTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVS--GVL 448

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
            R        + RS  G++   + +  ++  +  V
Sbjct: 449 IRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 483



 Score = 86.8 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 100/241 (41%), Gaps = 24/241 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D I+ +   ++ +D+    K G   +F +S       + +  +  + L      
Sbjct: 62  IALDNIDAIIKLIRGSKTSDV---AKEGLMTQFNLSD------KQAQAILDMRLQRLTGL 112

Query: 731 KGDQVISM--AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           + +++      +V   +          + +   R  +     +    +    + G++   
Sbjct: 113 EREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSL 172

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN 848
             ++L  +E+  +T++++G+ KR     +R   R G+GI+     + + +  LVA    +
Sbjct: 173 EDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---S 229

Query: 849 DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDE 905
            +D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D+
Sbjct: 230 THDTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDD 287

Query: 906 A 906
           +
Sbjct: 288 S 288


>gi|227873176|ref|ZP_03991467.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
 gi|227841007|gb|EEJ51346.1| possible DNA topoisomerase (ATP-hydrolyzing) [Oribacterium sinus
           F0268]
          Length = 409

 Score =  283 bits (724), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 128/442 (28%), Positives = 222/442 (50%), Gaps = 62/442 (14%)

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           + R+ + NE   L  +I    +IL    RLL +IK+EL  + D+    R+T        +
Sbjct: 1   MERERLENEYQDLLAKIAYYKEILGDERRLLAVIKEELDVIADKYGEDRKTSFSY-DDIL 59

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + ED I  +D+V+T + LGY+KR+    +R Q RGGKG  G+   ++D++ DLF+ + H 
Sbjct: 60  DAEDLIADDDVVITSTSLGYIKRMSPENFRQQNRGGKGIKGMQTIEKDYIEDLFMTTNHH 119

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            ++FF+++G V++ K + +P  S  ARG AL+N+L L +GE++   +   +     +   
Sbjct: 120 YIMFFTNMGRVFRIKGYEIPEASRTARGTALVNLLPLQEGEKVNASLCLRD---PKDEQD 176

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  TK G V++  LS++  + R+G IA+ L   D+++  +  +++ +I+L TK G  ++
Sbjct: 177 LILTTKSGMVKKTALSEYANVRRNGLIAISLKEDDQLIEAKLLSKDENIILVTKKGMAIQ 236

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F    +R   GR+S+GV GI L  GD+VI M                             
Sbjct: 237 FNEKDVR-RTGRSSMGVIGIRLNDGDEVIGM----------------------------- 266

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                   +   + + +L VSEKG+GK T    F+  NR GKG+
Sbjct: 267 ------------------------QESSQGENMLVVSEKGYGKLTEKSAFKAQNRGGKGM 302

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           R   +++  + G LV     + + +I+L++ +G +IR+ +  I I  R   GV + +  K
Sbjct: 303 RCYKITE--KTGDLVGFKLCDQDREILLITTEGIMIRMSLENISIIGRNASGVKLMNLDK 360

Query: 888 DE--RVVSVERIRESEIVDEAE 907
           D    + SV ++RESE   E +
Sbjct: 361 DGDTTIASVAKVRESEGDGEED 382



 Score = 61.3 bits (147), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 69/424 (16%), Positives = 152/424 (35%), Gaps = 32/424 (7%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR-ELMQRSWNASDIK 428
             R +        +      +     +   ++ +I+   +    +  E  + S++  DI 
Sbjct: 3   RERLENEYQDLLAKIAYYKEILG---DERRLLAVIKEELDVIADKYGEDRKTSFSYDDIL 59

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
           D  DLI D    I S    Y+  +      +       G+       +     + +    
Sbjct: 60  DAEDLIADDDVVITSTSLGYIKRMSPENFRQQN-RGGKGIKGMQTIEKDYIEDLFMTTNH 118

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDC--------IVREDMVV 540
             +   + +  + + +   + +   T R T +V  L   E E             E  ++
Sbjct: 119 HYIMFFTNMGRVFRIKGYEIPEASRTARGTALVNLLPLQEGEKVNASLCLRDPKDEQDLI 178

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
             +  G VK+  LS Y   RR G     + ++++D + +  ++S   +++  +  G   +
Sbjct: 179 LTTKSGMVKKTALSEYANVRRNG--LIAISLKEDDQLIEAKLLSKDENIILVTKKGMAIQ 236

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                +      + G   +  + LN G+           + S     ++  ++ G  +  
Sbjct: 237 FNEKDVRRTGRSSMG---VIGIRLNDGDE------VIGMQESSQGENMLVVSEKGYGKLT 287

Query: 661 KLSDFIQINR----SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           + S F   NR         +   + D ++  + C Q+ +ILL T  G  +R  +  I   
Sbjct: 288 EKSAFKAQNRGGKGMRCYKITEKTGD-LVGFKLCDQDREILLITTEGIMIRMSLENI-SI 345

Query: 717 AGRNSVGVRGISLAKGDQ--VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
            GRN+ GV+ ++L K     + S+A V  ++ D +E +       A   +   + E+   
Sbjct: 346 IGRNASGVKLMNLDKDGDTTIASVAKVRESEGDGEEDLETDPGEDADTEIAEINEEDTKE 405

Query: 775 LKND 778
            + +
Sbjct: 406 NQEE 409


>gi|7262521|dbj|BAA92800.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 108/139 (77%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 192 THNLGEVVDGCVAVIDNPD 210
            HNL EV++GC+A ID+ D
Sbjct: 121 PHNLTEVINGCLAYIDDED 139


>gi|2921173|gb|AAC04690.1| topoisomerase IV subunit C [Mycoplasma hominis ATCC 23114]
          Length = 145

 Score =  283 bits (724), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 102/145 (70%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M  + ++ ++ + K ARI G+V+G+YHPHG+++IY+AL RMAQDW  
Sbjct: 1   DGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKS 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
              LIE  GN GS+D DP AA RYTE RL+K +  +L DL +  V   PN+D S  EP+V
Sbjct: 61  NFPLIEMHGNKGSIDDDPAAAMRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIV 120

Query: 167 LCARYPNVLVNGGGGIAVGMATNIP 191
           L A +PN+LVNG  GIA G AT IP
Sbjct: 121 LPALFPNLLVNGAKGIAAGFATEIP 145


>gi|219920999|emb|CAQ76677.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921001|emb|CAQ76678.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921003|emb|CAQ76679.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921005|emb|CAQ76680.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921007|emb|CAQ76681.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921013|emb|CAQ76684.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921015|emb|CAQ76685.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921017|emb|CAQ76686.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921019|emb|CAQ76687.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921021|emb|CAQ76688.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 101/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|166154002|ref|YP_001654120.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 434/Bu]
 gi|301335201|ref|ZP_07223445.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis L2tet1]
 gi|165929990|emb|CAP03473.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu]
          Length = 490

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 132/513 (25%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP+G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPSGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 HAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+       +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|138999748|dbj|BAF51242.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  283 bits (723), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDALKLVMDNPDVTTRDLMEVLPG 145


>gi|261886134|ref|ZP_06010173.1| DNA gyrase subunit A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 430

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 144/487 (29%), Positives = 236/487 (48%), Gaps = 93/487 (19%)

Query: 446 TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              L ++Q+ AIL++RL++L GL R+ +  EL  +   I++   IL S + +  II+ EL
Sbjct: 3   KFGLFKLQSNAILDMRLSKLPGLEREKLAAELKEILELIEKLDAILKSETLIGNIIRVEL 62

Query: 506 LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKG 565
           L +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG
Sbjct: 63  LEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKG 122

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           +  V   D+DF+   F   +H +++F +  G +Y  KV+++P GS  A+GKA++N++SL 
Sbjct: 123 KVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGKAVVNLISLQ 182

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
             E+I  I+P  + +    +  + F TK+G V+R  LS+F  I   G  A+ LD  DE++
Sbjct: 183 ADEKIKAIIPTTDFD---ESKSLAFFTKNGIVKRTNLSEFKNIRSIGVKAINLDDNDELV 239

Query: 686 SVETCTQEND---------------------------------ILLTTKLGQCVRFPISA 712
           +V     E D                                 +   TK G C++F ++ 
Sbjct: 240 TVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSENSLESGKMLFAVTKKGMCIKFALNK 299

Query: 713 IRVFAGRNSVGVRGISLAKG-DQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
           +R   GR S GV  I   +  D+V+   ++ +                            
Sbjct: 300 VRQI-GRVSRGVTAIRFKENLDEVVGAVVIENDS-------------------------- 332

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                     Q IL+VS+KG GKRT++ ++R+ +R GKG+    
Sbjct: 333 --------------------------QEILSVSQKGIGKRTTADEYRLQSRGGKGVICMK 366

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           ++   +   LV V  V++   ++ ++  G +IRV +  IR A R T GV++ +    + V
Sbjct: 367 LTPKTK--DLVGVVMVDEEMDLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVD-GDEV 423

Query: 892 VSVERIR 898
           VS+ R  
Sbjct: 424 VSIARCP 430



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 62/363 (17%), Positives = 130/363 (35%), Gaps = 36/363 (9%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           + +G + RV L   +++ +  +    V   D+  V DL        V+  +  G++ +  
Sbjct: 52  TLIGNIIRVELLEIKSKFKCPRITDIVDDYDDIDVEDLIP--NENMVVTITHRGYIKRVP 109

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
                      +GK  +     +  E   T M         +   + +      V +   
Sbjct: 110 SKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWL----KVYKIPE 165

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQEND---ILLTTKLGQCVRFPISAIRVFAGR 719
                  ++    + L + ++I ++   T  ++   +   TK G   R  +S  +     
Sbjct: 166 GSRTAKGKAVVNLISLQADEKIKAIIPTTDFDESKSLAFFTKNGIVKRTNLSEFKNI--- 222

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            S+GV+ I+L   D+++++ I      +                      ++        
Sbjct: 223 RSIGVKAINLDDNDELVTVVIANSEPDES--------------------YDDSFEDGEGV 262

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
           S    ISE+  +      + +  V++KG   + +    R   R  +G+ A    +   + 
Sbjct: 263 SNLQTISEDNSENSLESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKE--NLD 320

Query: 840 ALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER-VVSVERI 897
            +V    + ND+ +I+ VS KG   R   +E R+ SR  KGV+        + +V V  +
Sbjct: 321 EVVGAVVIENDSQEILSVSQKGIGKRTTADEYRLQSRGGKGVICMKLTPKTKDLVGVVMV 380

Query: 898 RES 900
            E 
Sbjct: 381 DEE 383



 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 92/300 (30%), Gaps = 95/300 (31%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T  G ++R     + +  R   GK+A+     D I S  TC   + ++  T
Sbjct: 91  PNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVT 150

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
             GQ     +  I     R + G   V  ISL   +++ ++      D            
Sbjct: 151 DRGQLYWLKVYKI-PEGSRTAKGKAVVNLISLQADEKIKAIIPTTDFD------------ 197

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
                                                 + + +   ++ G  KRT+  +F
Sbjct: 198 --------------------------------------ESKSLAFFTKNGIVKRTNLSEF 219

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDN-DQ------------------------ 852
              N    G++A ++   ++   LV V   N   D+                        
Sbjct: 220 --KNIRSIGVKAINL---DDNDELVTVVIANSEPDESYDDSFEDGEGVSNLQTISEDNSE 274

Query: 853 --------IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD-ERVVSVERIRESEIV 903
                   +  V+ KG  I+  +N++R   R ++GV      ++ + VV    I      
Sbjct: 275 NSLESGKMLFAVTKKGMCIKFALNKVRQIGRVSRGVTAIRFKENLDEVVGAVVIENDSQE 334



 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 8/167 (4%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L      D  +     +    R+   + +        + +  +  +   ++L   E  +
Sbjct: 37  ILELIEKLDAILKSETLIGNIIRVELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMV 96

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T++ +G+ KR  S  +    R GKG  A      + I    + F    +D ++ V+D+G
Sbjct: 97  VTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIE---SFFTCMSHDTLMFVTDRG 153

Query: 861 TLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
            L  + V +I   SR  KG   V + S   DE++ ++  I  ++  +
Sbjct: 154 QLYWLKVYKIPEGSRTAKGKAVVNLISLQADEKIKAI--IPTTDFDE 198


>gi|323255023|gb|EGA38813.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
          Length = 311

 Score =  282 bits (722), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 108/342 (31%), Positives = 182/342 (53%), Gaps = 59/342 (17%)

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S  ARG+ ++N+L L   E
Sbjct: 3   ARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEANE 62

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE 688
           RIT I+P  E E   N   V  AT  G V++  L++F +   +G IA+ L+  DE++ V+
Sbjct: 63  RITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVD 119

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADY 748
             +  ++++L +  G+ VRF   A+R   GR + GVRGI LA  D+V+S+ I        
Sbjct: 120 LTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRGIKLAGDDKVVSLII-------- 170

Query: 749 DERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGF 808
                                                           E  ILTV++ G+
Sbjct: 171 ---------------------------------------------PRGEGAILTVTQNGY 185

Query: 809 GKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVN 868
           GKRT++ ++   +R+ +G+ +  V++ N  G++V    V+D DQI++++D GTL+R  V+
Sbjct: 186 GKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRVS 243

Query: 869 EIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           EI +  R T+GV++  TA+DE VV ++R+ E    +E ++ +
Sbjct: 244 EISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAID 285



 Score = 70.2 bits (170), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 78  NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 135

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 136 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 186

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 187 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 245

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 246 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDV 305

Query: 775 LKNDSS 780
             +   
Sbjct: 306 ADDADE 311



 Score = 43.2 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFST 885
           A  + + + I  L      N +D I+  S +G L  + V ++  ASR  +G   V +   
Sbjct: 2   AARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPL 58

Query: 886 AKDERVVSVERIRESEI 902
             +ER+ ++  +RE E 
Sbjct: 59  EANERITAILPVREYEE 75


>gi|138999588|dbj|BAF51190.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999590|dbj|BAF51191.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999592|dbj|BAF51192.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999598|dbj|BAF51193.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999602|dbj|BAF51194.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999604|dbj|BAF51195.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999606|dbj|BAF51196.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999609|dbj|BAF51197.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999611|dbj|BAF51198.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999614|dbj|BAF51199.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999616|dbj|BAF51200.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999623|dbj|BAF51202.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999625|dbj|BAF51203.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999627|dbj|BAF51204.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999633|dbj|BAF51205.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999635|dbj|BAF51206.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999637|dbj|BAF51207.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999642|dbj|BAF51208.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999644|dbj|BAF51209.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999649|dbj|BAF51210.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999651|dbj|BAF51211.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999653|dbj|BAF51212.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999658|dbj|BAF51213.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999660|dbj|BAF51214.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999662|dbj|BAF51215.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999664|dbj|BAF51216.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999666|dbj|BAF51217.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999668|dbj|BAF51218.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999695|dbj|BAF51227.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999701|dbj|BAF51228.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999705|dbj|BAF51229.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999707|dbj|BAF51230.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999711|dbj|BAF51231.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999731|dbj|BAF51237.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999733|dbj|BAF51238.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999739|dbj|BAF51239.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999760|dbj|BAF51245.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000003|dbj|BAF51146.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000005|dbj|BAF51147.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000008|dbj|BAF51148.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000010|dbj|BAF51149.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000012|dbj|BAF51150.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000017|dbj|BAF51151.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000022|dbj|BAF51152.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000024|dbj|BAF51153.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000030|dbj|BAF51154.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000032|dbj|BAF51155.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000034|dbj|BAF51156.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000038|dbj|BAF51157.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000040|dbj|BAF51158.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000045|dbj|BAF51159.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000050|dbj|BAF51160.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000052|dbj|BAF51161.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000058|dbj|BAF51162.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000060|dbj|BAF51163.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000064|dbj|BAF51164.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000066|dbj|BAF51165.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000068|dbj|BAF51166.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000071|dbj|BAF51167.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000073|dbj|BAF51168.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000079|dbj|BAF51169.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000081|dbj|BAF51170.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000087|dbj|BAF51171.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000089|dbj|BAF51172.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000092|dbj|BAF51173.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000097|dbj|BAF51174.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000099|dbj|BAF51175.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000104|dbj|BAF51176.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000106|dbj|BAF51177.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000108|dbj|BAF51178.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000114|dbj|BAF51179.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000116|dbj|BAF51180.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000119|dbj|BAF51181.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000121|dbj|BAF51182.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000123|dbj|BAF51183.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000128|dbj|BAF51184.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000130|dbj|BAF51185.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000133|dbj|BAF51186.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000135|dbj|BAF51187.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000141|dbj|BAF51188.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|139000143|dbj|BAF51189.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538783|dbj|BAG67626.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538785|dbj|BAG67627.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538787|dbj|BAG67628.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538789|dbj|BAG67629.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538791|dbj|BAG67630.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538793|dbj|BAG67631.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538795|dbj|BAG67632.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538797|dbj|BAG67633.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538799|dbj|BAG67634.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538801|dbj|BAG67635.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538803|dbj|BAG67636.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538805|dbj|BAG67637.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538807|dbj|BAG67638.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538809|dbj|BAG67639.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538811|dbj|BAG67640.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538813|dbj|BAG67641.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538815|dbj|BAG67642.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538817|dbj|BAG67643.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538819|dbj|BAG67644.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538821|dbj|BAG67645.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538823|dbj|BAG67646.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538825|dbj|BAG67647.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538827|dbj|BAG67648.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538829|dbj|BAG67649.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538831|dbj|BAG67650.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538833|dbj|BAG67651.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538835|dbj|BAG67652.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538837|dbj|BAG67653.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538839|dbj|BAG67654.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538841|dbj|BAG67655.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538843|dbj|BAG67656.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538845|dbj|BAG67657.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538847|dbj|BAG67658.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538849|dbj|BAG67659.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538851|dbj|BAG67660.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538853|dbj|BAG67661.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538855|dbj|BAG67662.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538857|dbj|BAG67663.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538859|dbj|BAG67664.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538861|dbj|BAG67665.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538863|dbj|BAG67666.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538865|dbj|BAG67667.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538867|dbj|BAG67668.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538869|dbj|BAG67669.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538871|dbj|BAG67670.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538873|dbj|BAG67671.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538875|dbj|BAG67672.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538877|dbj|BAG67673.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538879|dbj|BAG67674.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538881|dbj|BAG67675.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538883|dbj|BAG67676.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538885|dbj|BAG67677.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538887|dbj|BAG67678.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538889|dbj|BAG67679.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538891|dbj|BAG67680.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538893|dbj|BAG67681.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538895|dbj|BAG67682.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538897|dbj|BAG67683.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538899|dbj|BAG67684.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538901|dbj|BAG67685.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538903|dbj|BAG67686.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538905|dbj|BAG67687.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538907|dbj|BAG67688.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538909|dbj|BAG67689.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538911|dbj|BAG67690.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538913|dbj|BAG67691.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538915|dbj|BAG67692.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538917|dbj|BAG67693.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538919|dbj|BAG67694.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538921|dbj|BAG67695.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538923|dbj|BAG67696.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538925|dbj|BAG67697.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538927|dbj|BAG67698.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538929|dbj|BAG67699.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538931|dbj|BAG67700.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538933|dbj|BAG67701.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538935|dbj|BAG67702.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538937|dbj|BAG67703.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538939|dbj|BAG67704.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538941|dbj|BAG67705.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538943|dbj|BAG67706.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538945|dbj|BAG67707.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538947|dbj|BAG67708.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538949|dbj|BAG67709.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539001|dbj|BAG67735.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539003|dbj|BAG67736.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539005|dbj|BAG67737.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|11863189|gb|AAD43654.2| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 143

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/143 (53%), Positives = 104/143 (72%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRILF M   G  ++K + K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR 
Sbjct: 1   LKPVQRRILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRH 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           +LIE  GN GS+D DPPAA RYTE +L + +  L+ D+ K+TV F PNYD +  EP+VL 
Sbjct: 61  VLIEMHGNNGSIDNDPPAAMRYTEAKLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLP 120

Query: 169 ARYPNVLVNGGGGIAVGMATNIP 191
           AR+PN+LVNG  GI+ G AT+IP
Sbjct: 121 ARFPNLLVNGSTGISSGYATDIP 143


>gi|7262519|dbj|BAA92799.1| DNA gyrase subunit A [Shigella sonnei]
          Length = 140

 Score =  282 bits (722), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/139 (61%), Positives = 108/139 (77%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP
Sbjct: 61  EIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIP 120

Query: 192 THNLGEVVDGCVAVIDNPD 210
            HNL EV++GC+A ID+ D
Sbjct: 121 PHNLTEVINGCLAYIDDED 139


>gi|138999671|dbj|BAF51219.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999673|dbj|BAF51220.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999675|dbj|BAF51221.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999677|dbj|BAF51222.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999679|dbj|BAF51223.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999685|dbj|BAF51224.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999687|dbj|BAF51225.1| DNA gyrase subunit A [Streptococcus mutans NN2025]
 gi|138999689|dbj|BAF51226.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999713|dbj|BAF51232.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538951|dbj|BAG67710.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538953|dbj|BAG67711.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538955|dbj|BAG67712.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538957|dbj|BAG67713.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538959|dbj|BAG67714.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538961|dbj|BAG67715.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538963|dbj|BAG67716.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538965|dbj|BAG67717.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538967|dbj|BAG67718.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538969|dbj|BAG67719.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538971|dbj|BAG67720.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538973|dbj|BAG67721.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538975|dbj|BAG67722.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538977|dbj|BAG67723.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538979|dbj|BAG67724.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538981|dbj|BAG67725.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538983|dbj|BAG67726.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538985|dbj|BAG67727.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538987|dbj|BAG67728.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538989|dbj|BAG67729.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538991|dbj|BAG67730.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538993|dbj|BAG67731.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538995|dbj|BAG67732.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538997|dbj|BAG67733.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195538999|dbj|BAG67734.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 112/144 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D     +DNPD+    LME++ G
Sbjct: 122 IDAVKLAMDNPDVTTRDLMEVLPG 145


>gi|289525704|emb|CBJ15185.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2]
 gi|296435273|gb|ADH17451.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/150]
 gi|296438992|gb|ADH21145.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis E/11023]
          Length = 490

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 133/513 (25%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 HAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+  T    +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSTIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|33338050|gb|AAQ13647.1|AF173980_1 topoisomerase IV [Pasteurella multocida]
          Length = 144

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/145 (54%), Positives = 106/145 (73%), Gaps = 3/145 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+    KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S 
Sbjct: 1   DGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSY 60

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R  L++GQGN+G+ D DP   AA RYTE RL K A  LL +LG+ TVD++PN+DG+ +EP
Sbjct: 61  RYPLVDGQGNWGAPD-DPKSFAAMRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEP 119

Query: 165 VVLCARYPNVLVNGGGGIAVGMATN 189
             L AR P++L+NG  GIAVGMAT 
Sbjct: 120 QYLPARLPHILLNGTTGIAVGMATK 144


>gi|138999618|dbj|BAF51201.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AIEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|138999717|dbj|BAF51233.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999722|dbj|BAF51234.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999724|dbj|BAF51235.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999729|dbj|BAF51236.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539007|dbj|BAG67738.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539009|dbj|BAG67739.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539011|dbj|BAG67740.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539013|dbj|BAG67741.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539015|dbj|BAG67742.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539017|dbj|BAG67743.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539019|dbj|BAG67744.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539021|dbj|BAG67745.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539023|dbj|BAG67746.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539025|dbj|BAG67747.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539027|dbj|BAG67748.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539029|dbj|BAG67749.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539031|dbj|BAG67750.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539033|dbj|BAG67751.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539035|dbj|BAG67752.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539037|dbj|BAG67753.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539039|dbj|BAG67754.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539041|dbj|BAG67755.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539043|dbj|BAG67756.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539045|dbj|BAG67757.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539047|dbj|BAG67758.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539049|dbj|BAG67759.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539051|dbj|BAG67760.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|195539053|dbj|BAG67761.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  282 bits (721), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 112/144 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNP +    LME++ G
Sbjct: 122 IDAVKLVMDNPYVTTRDLMEVLPG 145


>gi|255311486|ref|ZP_05354056.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276]
 gi|255317787|ref|ZP_05359033.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis 6276s]
          Length = 490

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 132/513 (25%), Positives = 213/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 HAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+       +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|15834656|ref|NP_296415.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270284821|ref|ZP_06194215.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Nigg]
 gi|270288850|ref|ZP_06195152.1| DNA topoisomerase IV subunit A [Chlamydia muridarum Weiss]
 gi|301336201|ref|ZP_07224403.1| DNA topoisomerase IV subunit A [Chlamydia muridarum MopnTet14]
 gi|7190071|gb|AAF38922.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg]
          Length = 490

 Score =  282 bits (720), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 137/528 (25%), Positives = 224/528 (42%), Gaps = 46/528 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I+D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NISDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++++    L         PDF +G  +       + Y  G GSIV+R    I  
Sbjct: 173 LKAQIAILNDQPFSL--------FPDFASGGSMD-----ASDYQDGLGSIVLRATIDIVN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  +L  LY +T  Q + +    A+   KP   ++  IL+      +  + +     L 
Sbjct: 274 HAKDLLQPLYAHTECQVVLTSRPTAIYQGKPWETSVSEILRLQTETLQSYLKKELLI-LE 332

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            +  R H    L            +       +T R  L +R  + S       + D  +
Sbjct: 333 DSLTREHYHKTLEY----------LFIKHKLYDTVRAMLSKRKTSPSASVIHNAVTDALA 382

Query: 439 YTIGSDGTMYLSEVQT-RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
             +   GT+   + Q    +  L + ++     +    EL SL  +       L    + 
Sbjct: 383 PFL---GTLPTPDKQATTQLASLTIKKILCFDENAYEKELLSLEKKRCNVQKDLGQLKKY 439

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHL 545
             +  ++LL    +    R+T+I +    +  +    +     T+   
Sbjct: 440 TILYIKKLLD-AYKHLGHRKTKIEKFEDALLGKSIHKKAKEASTIDQE 486


>gi|320540698|ref|ZP_08040319.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029239|gb|EFW11297.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 131

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/125 (63%), Positives = 102/125 (81%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I DE++NSYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVR 126

Query: 135 LQKAA 139
           + K A
Sbjct: 127 MSKIA 131


>gi|34451803|gb|AAQ72397.1| GyrA [Klebsiella variicola]
 gi|34451805|gb|AAQ72398.1| GyrA [Klebsiella variicola]
 gi|34451807|gb|AAQ72399.1| GyrA [Klebsiella variicola]
          Length = 130

 Score =  282 bits (720), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/130 (62%), Positives = 101/130 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIA 120

Query: 184 VGMATNIPTH 193
           VGMATNIP H
Sbjct: 121 VGMATNIPPH 130


>gi|166154877|ref|YP_001653132.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|165930865|emb|CAP06427.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 490

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 132/513 (25%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP+G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPSGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 HAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTETLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+       +++      D       
Sbjct: 334 SLSRELYHKTLECLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|15605393|ref|NP_220179.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|3329110|gb|AAC68255.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX]
 gi|297748791|gb|ADI51337.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC]
 gi|297749671|gb|ADI52349.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC]
          Length = 490

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 133/513 (25%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 YAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+  T    +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSTIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|76789400|ref|YP_328486.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis A/HAR-13]
 gi|237803090|ref|YP_002888284.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|76167930|gb|AAX50938.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13]
 gi|231274324|emb|CAX11119.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT]
 gi|296436200|gb|ADH18374.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9768]
 gi|296438060|gb|ADH20221.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11074]
 gi|297140562|gb|ADH97320.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/9301]
          Length = 490

 Score =  281 bits (719), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 132/513 (25%), Positives = 213/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 YAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+       +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|60678992|gb|AAX33777.1| DNA gyrase subunit A [Mycoplasma synoviae]
          Length = 135

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/135 (54%), Positives = 105/135 (77%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ M ++G+    +Y K ARI G+V+GKYHPHG++++Y+A+ R+AQD+S+R  L++
Sbjct: 1   HRRILYDMSELGMTPGTQYKKSARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVD 60

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           G GNFGS+DGD PA+ RYTE R+ K +  LL+ + K+TVDF  NYD + +EP VL +R+P
Sbjct: 61  GHGNFGSIDGDEPASMRYTEARMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFP 120

Query: 173 NVLVNGGGGIAVGMA 187
           N+LV+G  GIAVGMA
Sbjct: 121 NLLVSGSIGIAVGMA 135


>gi|237805011|ref|YP_002889165.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273311|emb|CAX10226.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 490

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 132/513 (25%), Positives = 214/513 (41%), Gaps = 56/513 (10%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 YAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                        L         +  ++   + SP+       +++      D       
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAP-- 391

Query: 434 IDDSSYTIGSDGTMYLSEVQTRA-ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                            + Q  A +  L + ++     +    EL  L  +       LS
Sbjct: 392 -----------------DKQATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLS 434

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
              +   +  ++LL    +L   R+T+I +   
Sbjct: 435 QLKKYTVLYIKKLLETYRQLG-HRKTKIAKFDD 466


>gi|60678998|gb|AAX33780.1| topoisomerase IV subunit A [Mycoplasma synoviae]
 gi|60679000|gb|AAX33781.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 170

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/165 (48%), Positives = 115/165 (69%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G++ +K + K AR+ G+V+GKYHPHG+++IY+AL RMAQ+W + L L+E  GN
Sbjct: 6   LYSMWMLGLKNDKAFKKSARVVGDVIGKYHPHGDSSIYEALIRMAQEWKMNLPLVEMHGN 65

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            GS+D DP AA RYTE RL+   + +L+ + K TV+F PN+D S +EPVVL   +PN+LV
Sbjct: 66  KGSIDDDPAAAMRYTETRLEAVTNLMLEIINKKTVNFVPNFDDSEKEPVVLPVLFPNLLV 125

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           NG  GIA G AT+IP HNL E++D C+  + N       + +II+
Sbjct: 126 NGTKGIASGFATDIPPHNLAELIDACIEKLKNKATPYSKIRQIIK 170


>gi|296437129|gb|ADH19299.1| DNA topoisomerase IV subunit A [Chlamydia trachomatis G/11222]
          Length = 490

 Score =  281 bits (718), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 118/416 (28%), Positives = 184/416 (44%), Gaps = 35/416 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +    T  F  +YDG  QEP +L A+ P +L++G  GIAVGM T I  HN  ++
Sbjct: 115 AKEVLFNTDLMT--FHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A++++    L         PDFP G  +       + Y  G GSIV+R    I  
Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMD-----ASDYQDGLGSIVLRATIDIIN 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L +G 
Sbjct: 220 DK----TLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQDFSTDLP--HIEIKLPKGI 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL-- 376
            A  +L  LY +T  Q + +    A+   KP   T+  IL+      +  + +    L  
Sbjct: 274 YAKDLLRPLYTHTECQVILTSRPTAIYQGKPWETTISEILRLQTKTLQNYLKKELLILED 333

Query: 377 ---LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                        L         +  ++   + SP+       +++      D   
Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLP 389


>gi|138999741|dbj|BAF51240.1| DNA gyrase subunit A [Streptococcus mutans]
 gi|138999746|dbj|BAF51241.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 113/144 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ +MAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVQMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|219921009|emb|CAQ76682.1| gyrase A subunit [Klebsiella oxytoca]
 gi|219921011|emb|CAQ76683.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  280 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 81/131 (61%), Positives = 101/131 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|138999757|dbj|BAF51244.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  280 bits (717), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 113/144 (78%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP++L +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLILPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|167946605|ref|ZP_02533679.1| DNA gyrase, subunit A, type II topoisomerase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 136

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/128 (60%), Positives = 102/128 (79%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K +  V++ DEM+ SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK 
Sbjct: 3   EFAKEVLPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD PAA RY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRY 122

Query: 131 TECRLQKA 138
           TE R+ K 
Sbjct: 123 TEVRMAKI 130


>gi|297242275|gb|ADI24810.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  280 bits (716), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 90/178 (50%), Positives = 126/178 (70%), Gaps = 4/178 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+ +GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   QKSARTVGDGLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRG 177


>gi|138999750|dbj|BAF51243.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  280 bits (716), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 112/144 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  NYDGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HN GE 
Sbjct: 62  AMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNSGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|219815931|gb|ACL37052.1| GyrA [Salmonella enterica]
          Length = 127

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 103/127 (81%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH 
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHE 120

Query: 142 LLDDLGK 148
           L+ DL K
Sbjct: 121 LMADLEK 127


>gi|309807819|ref|ZP_07701751.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|308168921|gb|EFO71007.1| DNA gyrase/topoisomerase IV, A subunit [Lactobacillus iners LactinV
           01V1-a]
          Length = 136

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/130 (59%), Positives = 104/130 (80%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           ++VI+ RA+PD+RDGLKPV RRIL+GM ++GV  +K Y K ARI GEVMGK+HPHG+++I
Sbjct: 1   MSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYKKSARIVGEVMGKFHPHGDSSI 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           Y+A+A MAQD+S R +L++G GNFGS+DGD PAA RYTE R+ K A  +L D+ KDT+D+
Sbjct: 61  YEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTEARMSKIAMEMLRDINKDTIDW 120

Query: 154 RPNYDGSFQE 163
           + NYD +  E
Sbjct: 121 QRNYDDNENE 130


>gi|219921023|emb|CAQ76689.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  279 bits (714), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/131 (61%), Positives = 100/131 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  G 
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGX 120

Query: 183 AVGMATNIPTH 193
           AVGMATNIP H
Sbjct: 121 AVGMATNIPPH 131


>gi|34451813|gb|AAQ72402.1| GyrA [Enterobacter sp. B5R5]
          Length = 130

 Score =  279 bits (713), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/130 (61%), Positives = 101/130 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
             AA RYTE RL K AH L+ DL K+TVD+  NYDG+ + P V+  + PN+LVNG  GIA
Sbjct: 61  SAAAMRYTEIRLAKIAHELMADLEKETVDYVDNYDGTERIPDVMPTKIPNLLVNGSSGIA 120

Query: 184 VGMATNIPTH 193
           VGMATNIP H
Sbjct: 121 VGMATNIPPH 130


>gi|138999762|dbj|BAF51246.1| DNA gyrase subunit A [Streptococcus mutans]
          Length = 145

 Score =  278 bits (712), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/144 (60%), Positives = 112/144 (77%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K 
Sbjct: 2   GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 61

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L D+ K+TVDF  N DGS +EP+VL +R+PN+LVNG  GIAVGMATNIP HNLGE 
Sbjct: 62  AMEMLRDINKNTVDFADNCDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPPHNLGET 121

Query: 199 VDGCVAVIDNPDIDLDALMEIIRG 222
           +D    V+DNPD+    LME++ G
Sbjct: 122 IDAVKLVMDNPDVTTRDLMEVLPG 145


>gi|219921027|emb|CAQ76691.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 131

 Score =  278 bits (711), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 5/136 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M      WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   WAM-----IWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 55

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GSVDGD  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVN
Sbjct: 56  GSVDGDSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVN 115

Query: 178 GGGGIAVGMATNIPTH 193
           G  GIAVGMATNIP H
Sbjct: 116 GSSGIAVGMATNIPPH 131


>gi|254729444|gb|ACT79806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 131

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/125 (60%), Positives = 103/125 (82%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAA 139
           L K A
Sbjct: 127 LAKIA 131


>gi|323575321|dbj|BAJ78200.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575323|dbj|BAJ78201.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575325|dbj|BAJ78202.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575327|dbj|BAJ78203.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575329|dbj|BAJ78204.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575331|dbj|BAJ78205.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575333|dbj|BAJ78206.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575335|dbj|BAJ78207.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575337|dbj|BAJ78208.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575339|dbj|BAJ78209.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575341|dbj|BAJ78210.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575345|dbj|BAJ78212.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575347|dbj|BAJ78213.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575349|dbj|BAJ78214.1| DNA gyrase subunit A [Campylobacter coli]
 gi|323575351|dbj|BAJ78215.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/132 (62%), Positives = 96/132 (72%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 178 GGGGIAVGMATN 189
           G  GIAVGMATN
Sbjct: 121 GSSGIAVGMATN 132


>gi|77166860|gb|ABA62406.1| DNA gyrase subunit A [Parachlamydia acanthamoebae]
          Length = 144

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/143 (55%), Positives = 104/143 (72%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            DEM++SYL Y+++VI+ RA+PD RDGLKP  RRIL+ M Q+ +    K+ KCA+ISG+ 
Sbjct: 2   EDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDT 61

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
            G YHPHG   IY  L RMAQ W +R  L++GQGNFGSVDGD PAA RYTE RL  A+  
Sbjct: 62  SGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQ 121

Query: 142 LLDDLGKDTVDFRPNYDGSFQEP 164
           L++DL K+TV+  PNY+ + +EP
Sbjct: 122 LMEDLDKNTVEMVPNYNETKKEP 144


>gi|254729442|gb|ACT79805.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 132

 Score =  277 bits (709), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/126 (61%), Positives = 103/126 (81%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQKAAH 140
           L K AH
Sbjct: 127 LAKIAH 132


>gi|82408805|gb|ABB73196.1| DNA gyrase [Listonella anguillarum]
 gi|82408807|gb|ABB73197.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  277 bits (707), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 76/127 (59%), Positives = 97/127 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 174 VLVNGGG 180
           +LVNG  
Sbjct: 121 LLVNGSS 127


>gi|62288333|gb|AAX78442.1| ParC [Brevundimonas diminuta]
          Length = 144

 Score =  276 bits (706), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/137 (58%), Positives = 101/137 (73%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           K VHRRI++ M QM +       KCA++ GEVMG YHPHG+A+IY+AL R+AQD++ R  
Sbjct: 4   KAVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYP 63

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFG++DGD  AA RYTEC+L  AA  LLD + +D VDFRP YD   +EPVVL A
Sbjct: 64  LVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLLDGIDQDAVDFRPTYDDQDEEPVVLPA 123

Query: 170 RYPNVLVNGGGGIAVGM 186
            +PN+L NG  GIAVGM
Sbjct: 124 GFPNLLANGSSGIAVGM 140


>gi|28916602|gb|AAO59534.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  276 bits (705), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 129/217 (59%), Positives = 169/217 (77%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRG 
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGF 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 121 ITIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 180

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 181 MRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|44485|emb|CAA37623.1| gyrase A subunit [Mycoplasma pneumoniae]
          Length = 156

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/144 (56%), Positives = 110/144 (76%)

Query: 9   DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWN 68
            E  +  I ++S++ E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G    G+  +
Sbjct: 13  QELAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHD 72

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K ARI G+VM K+HPHG+ AIYD ++RMAQD+SLR LLI+G GNFGS+DGD PAA+
Sbjct: 73  RPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQ 132

Query: 129 RYTECRLQKAAHFLLDDLGKDTVD 152
           RYTE RL K A  LL D+ KDTVD
Sbjct: 133 RYTEARLSKLAGELLRDIDKDTVD 156


>gi|28916604|gb|AAO59535.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 217

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 130/217 (59%), Positives = 170/217 (78%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE R+ K A  +L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMA
Sbjct: 1   MRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP H LGEV++G +AV +NP+I    LME I GPDFPT   ILGR+GI+ AY +GRGS
Sbjct: 61  TNIPPHQLGEVIEGVLAVSENPEITNQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGS 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 121 IPIRAKAEIEETSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNG 180

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            R+VIE++R A+A VILN LY+ T+LQ+ F +N++AL
Sbjct: 181 MRIVIEIRRDANAHVILNNLYKQTALQTSFGINLLAL 217


>gi|319826938|gb|ADV74763.1| gyrase subunit alpha [Bacillus subtilis subsp. subtilis]
          Length = 222

 Score =  275 bits (704), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 129/222 (58%), Positives = 175/222 (78%)

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            GD  +A RYTE R+ K +  +L D+ KDT+D++ NY+GS +EP V+ +R+PN+LVNG  
Sbjct: 1   TGDSSSAMRYTEARMSKISMEILRDITKDTIDYQDNYEGSEREPGVMPSRFPNLLVNGAA 60

Query: 181 GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
           GIAVGMATNIP H LGE++DG +AV +NPDI +  LME+I GPDFPT   ILGR+GI+ A
Sbjct: 61  GIAVGMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKA 120

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 121 YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLR 180

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
           DESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F ++++
Sbjct: 181 DESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGIHLL 222


>gi|313799068|gb|ADR82153.1| topoisomerase IV subunit A [Mycoplasma sp. 1220]
          Length = 511

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 152/536 (28%), Positives = 273/536 (50%), Gaps = 39/536 (7%)

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L +L K+ V+F PN+D S  EP VL + +PN+L+NG  GIA+GMAT +P HN  E+
Sbjct: 1   AELILGELKKNPVNFVPNFDDSELEPAVLPSIFPNLLINGTTGIAIGMATEMPPHNFEEI 60

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR---GSIVIRGVSH 255
           +D  +A + NP++    L  I++GPDFPTG +I G  GI+ ++ TGR     I +     
Sbjct: 61  IDATIAKLQNPNLSFSQLCSIVKGPDFPTGGIIYGTKGIEESFETGRTLKNKIQLFSKFV 120

Query: 256 IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELK 315
           I   + ++  I +TEIPY V K+ ++  I  L+ +  +  + +++D+SDR+G ++VI L+
Sbjct: 121 ITSDNKNKY-IEITEIPYGVVKSDLVYSIDVLISQNEMDGVLEIKDQSDREGIKIVITLE 179

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           + A+   I+  L+  T LQ  +S N + +    P+   L  ++ ++V    ++  +   Y
Sbjct: 180 KDANEKSIMRYLFSKTKLQINYSYNNMVIKNNSPQLLNLNNLITSYVEHISDIKTKTLTY 239

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            + K + R  +++G        DE++ +IR S                A  I+DL+++  
Sbjct: 240 DVEKHKLRLEIVLGFLKVTEITDEIIEVIRKSE------------GSKAGVIQDLMNI-- 285

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                         ++ Q  AI ELRL +L+    ++ +NE + L  EI     +L  + 
Sbjct: 286 -----------FGFTKNQATAIAELRLYKLSKTDYNEFKNEKDYLESEINYINSLLEDKD 334

Query: 496 RLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           +    +   L  +++E  +PRRT+I   E   D +++D I  E + V +S  GY+KR+  
Sbjct: 335 KFTFYLINLLKELRNEFPSPRRTQIVDREYNFDYDEKDLIKEEIINVAISKFGYIKRLS- 393

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
                +       S  V++DED++T    V+T  + L F++ G      ++++     + 
Sbjct: 394 ----QKVIESNDFSTYVLKDEDYLTFYNQVNTMDTFLIFTNFGNYAIIPIYKIEECKWKD 449

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
            G  L + + L  GE + +++   +     +NL+V  AT++G V+R  + DF    
Sbjct: 450 NGIHLSDFVDLQSGEVVVSVIEVSD---WNSNLFVTIATRNGIVKRTPIKDFEVSR 502


>gi|11863181|gb|AAD43483.2| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 126

 Score =  275 bits (703), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/125 (59%), Positives = 98/125 (78%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAR 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|28865600|emb|CAD48114.1| topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 165

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/166 (52%), Positives = 119/166 (71%), Gaps = 3/166 (1%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT A I+   
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPK 165


>gi|78771378|gb|ABB51164.1| GyrA [Escherichia coli]
          Length = 128

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 101/122 (82%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQ 136
           L 
Sbjct: 127 LA 128


>gi|15721889|dbj|BAB68394.1| DNA gyrase subunit A [Salmonella paratyphi]
          Length = 128

 Score =  275 bits (702), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/128 (59%), Positives = 99/128 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|219815941|gb|ACL37057.1| GyrA [Salmonella enterica]
          Length = 122

 Score =  274 bits (701), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/122 (62%), Positives = 100/122 (81%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+
Sbjct: 1   IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGD 60

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  VIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 120

Query: 141 FL 142
            L
Sbjct: 121 EL 122


>gi|3411074|gb|AAC31135.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411076|gb|AAC31136.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411078|gb|AAC31137.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 100/130 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+++IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAA 139
           YTE R+ K  
Sbjct: 123 YTEARMTKIT 132


>gi|219815927|gb|ACL37050.1| GyrA [Salmonella enterica]
          Length = 123

 Score =  274 bits (700), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/123 (61%), Positives = 101/123 (82%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+
Sbjct: 1   EELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVI 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  GKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHEL 120

Query: 143 LDD 145
           + D
Sbjct: 121 MAD 123


>gi|82408809|gb|ABB73198.1| DNA gyrase [Listonella anguillarum]
 gi|82408811|gb|ABB73199.1| DNA gyrase [Listonella anguillarum]
 gi|82408813|gb|ABB73200.1| DNA gyrase [Listonella anguillarum]
 gi|82408815|gb|ABB73201.1| DNA gyrase [Listonella anguillarum]
          Length = 127

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/127 (59%), Positives = 96/127 (75%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++G
Sbjct: 1   RRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
           QGNFGS+DGD  AA RYTE R+ K AH LL DL K+TVD+ PNYDG+ Q P VL  + PN
Sbjct: 61  QGNFGSIDGDSAAAMRYTEVRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPN 120

Query: 174 VLVNGGG 180
           +LVNG  
Sbjct: 121 LLVNGSS 127


>gi|323575343|dbj|BAJ78211.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 132

 Score =  273 bits (699), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 81/132 (61%), Positives = 95/132 (71%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNF
Sbjct: 1   YAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           GS+DGD  AA RYTE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+N
Sbjct: 61  GSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLN 120

Query: 178 GGGGIAVGMATN 189
           G  GIAVG ATN
Sbjct: 121 GSSGIAVGRATN 132


>gi|259157367|gb|ACV96843.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 129

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 80/129 (62%), Positives = 100/129 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPP 120

Query: 193 HNLGEVVDG 201
           HNL EV++G
Sbjct: 121 HNLTEVING 129


>gi|208972177|gb|ACI32672.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 120

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 76/120 (63%), Positives = 99/120 (82%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYH
Sbjct: 1   SSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL
Sbjct: 61  PHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADL 120


>gi|11863183|gb|AAD43488.2| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 126

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 97/125 (77%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|11863185|gb|AAD43498.2| DNA gyrase subunit A [Staphylococcus hominis subsp. hominis]
 gi|12585583|gb|AAG49417.1| gyrase [Staphylococcus hominis subsp. hominis]
          Length = 126

 Score =  273 bits (698), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 98/125 (78%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|297242249|gb|ADI24797.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 182

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/183 (48%), Positives = 125/183 (68%), Gaps = 4/183 (2%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAE 128
           Y   AR  G+V+GK  PHG++  Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA 
Sbjct: 1   YRISARTVGDVLGKLDPHGDSGCYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT
Sbjct: 60  RYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMAT 119

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGS 247
           +IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRG 
Sbjct: 120 DIPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGG 179

Query: 248 IVI 250
             +
Sbjct: 180 HTV 182


>gi|11863187|gb|AAD43499.2| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 126

 Score =  273 bits (698), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/125 (59%), Positives = 98/125 (78%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+A+IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDASIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|15721887|dbj|BAB68393.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 128

 Score =  273 bits (697), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/128 (59%), Positives = 99/128 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|29839794|ref|NP_828900.1| DNA topoisomerase IV subunit A [Chlamydophila caviae GPIC]
 gi|29834141|gb|AAP04778.1| topoisomerase, subunit A, putative [Chlamydophila caviae GPIC]
          Length = 479

 Score =  272 bits (696), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 134/502 (26%), Positives = 222/502 (44%), Gaps = 43/502 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +++D  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   NVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA---NKGY-LIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +AV++N    L         PDF +G V+       + Y  G GSI +R    I  
Sbjct: 173 IAAQIAVLNNRAFTLL--------PDFYSGGVMD-----ASEYQDGLGSITMRASIQIAD 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D+    + I+L +G 
Sbjct: 220 QK----TLIIKEICPSTTTETLIRSIENAAKRGVIKIDSIQDFSTDQP--HIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  IL  L+++T  Q + +    A+   KP   T+  IL+      E  + +  +  L+
Sbjct: 274 YAKDILETLFQHTECQVVLTSKPTAIYNNKPVETTISEILRLHTEVLEGYLQKELQI-LH 332

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
               + H    L         +   +R          E + +  N    +DL + +  S 
Sbjct: 333 DELSQEHYYKSLEYIF-IKHRLYDTVR----------ENLSKLGNKVSQEDLHEAVLSSL 381

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               +      ++  T  +  L + ++          +L  +  +       L++  +  
Sbjct: 382 SPFLASLPETPNKEATGQLASLAIKKILCFNESHYTKDLAKIEKKQAAVEKDLNNMKKFT 441

Query: 499 GIIKQELLSVKDELDTPRRTRI 520
               + LL+   EL   R+T++
Sbjct: 442 IKYLKGLLAKYGELG-KRKTQV 462


>gi|3411080|gb|AAC31138.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411082|gb|AAC31139.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411084|gb|AAC31140.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411086|gb|AAC31141.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411088|gb|AAC31142.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411090|gb|AAC31143.1| DNA gyrase subunit A [Staphylococcus aureus]
 gi|3411092|gb|AAC31144.1| DNA gyrase subunit A [Staphylococcus aureus]
          Length = 133

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/130 (57%), Positives = 99/130 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA R
Sbjct: 63  SYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 122

Query: 130 YTECRLQKAA 139
           YTE R+ K  
Sbjct: 123 YTEARMTKIT 132


>gi|213619192|ref|ZP_03373018.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 318

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 130/377 (34%), Positives = 206/377 (54%), Gaps = 59/377 (15%)

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           + S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK 
Sbjct: 1   MGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKY 60

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
            PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S
Sbjct: 61  QPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEAS 120

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
             ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F +   
Sbjct: 121 RGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPRS 177

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
           +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRGI LA
Sbjct: 178 AGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRGIKLA 236

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
             D+V+S+ I     A                                            
Sbjct: 237 GDDKVVSLIIPRGEGA-------------------------------------------- 252

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
                    ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++V    V+D 
Sbjct: 253 ---------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSVVGAVQVDDC 301

Query: 851 DQIILVSDKGTLIRVPV 867
           DQI++++D GTL+R  V
Sbjct: 302 DQIMMITDAGTLVRTRV 318



 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 13/236 (5%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    R+   A   D   E    +  +QE+ ++  +  G     P++       R  
Sbjct: 19  RDQFGDERRTEITANSADINIE----DLISQEDVVVTLSHQGYVKYQPLTDYEA-QRRGG 73

Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G     + + D +  + +    D           Y   +        G           
Sbjct: 74  KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP 133

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 I+         +   +   +  G  K+T+  +F     +  GI A ++   N+ 
Sbjct: 134 LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNL---NDG 188

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L+ V   + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 189 DELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 244



 Score = 79.5 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 12/262 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   L+D+    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 49  VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 108

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
               +  +   A R + G   V  + L   +++ +  I+   + +    +         +
Sbjct: 109 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITA--ILPVREYEEGVNVFMATASGTVK 165

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +    +     S    +    +  E    +L      ++  S  G   R      R   R
Sbjct: 166 KTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGR 225

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           +  G+R   ++       +V++        I+ V+  G   R   +E    SRAT+GV+ 
Sbjct: 226 TATGVRGIKLA---GDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVIS 282

Query: 883 FSTAK-DERVVSVERIRESEIV 903
               + +  VV   ++ + + +
Sbjct: 283 IKVTERNGSVVGAVQVDDCDQI 304



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 57/195 (29%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R       +    +  + +  N ++   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 12  REEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRR 71

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATK---- 878
            GKG  A  + + + I  L      N +D I+  S +G L  + V ++  ASR  +    
Sbjct: 72  GGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPI 128

Query: 879 -----------------------GVVIF---------------------------STAKD 888
                                  GV +F                           +    
Sbjct: 129 VNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDG 188

Query: 889 ERVVSVERIRESEIV 903
           + ++ V+    S+ V
Sbjct: 189 DELIGVDLTSGSDEV 203


>gi|313192117|emb|CBX19918.1| gyrase A [Clostridium perfringens]
          Length = 249

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 139/250 (55%), Positives = 193/250 (77%), Gaps = 1/250 (0%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           +TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP HNLGEV+DG +A+IDN
Sbjct: 1   NTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIALIDN 60

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           P++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R  + IE+    R +I+V
Sbjct: 61  PELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVRAKAEIEE-ENGRHKIIV 119

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           TE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+VIELKR A+ +V LN LY
Sbjct: 120 TELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMVIELKRDANPNVTLNLLY 179

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
           ++T +Q  F V M+AL   +P+   L  +L  ++ F+++V+ RRT++ LNKA++RAH+L 
Sbjct: 180 KHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYINFQKDVITRRTQFELNKAKERAHILE 239

Query: 389 GLAIAVANLD 398
           GL IA+ N+D
Sbjct: 240 GLIIALDNID 249


>gi|284154632|gb|ADB78417.1| DNA gyrase [Bacillus mojavensis]
          Length = 189

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 109/189 (57%), Positives = 144/189 (76%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + A+ ++  RMAQD++  + L++G GNFG VDGD  AA RY E R+ K A  +L D+ KD
Sbjct: 1   DFAVXESXVRMAQDFNYVICLVDGHGNFGXVDGDSAAAMRYXEARMXKIAMEILRDITKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+D++ NYDGS +EPVV+ +R+PN+LVNG  GIAVGMATNIP H LGE++DG +AV +N 
Sbjct: 61  TIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAVSENK 120

Query: 210 DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
           DI +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VT
Sbjct: 121 DITIQELMELIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVT 180

Query: 270 EIPYQVNKA 278
           E+PYQVNKA
Sbjct: 181 ELPYQVNKA 189


>gi|207110089|ref|ZP_03244251.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 132

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/131 (60%), Positives = 101/131 (77%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQGNFGS+DGD 
Sbjct: 1   LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
            AA RYTE R+ KA+  +L D+ KDT+DF PNYD + +EP +L +R PN+LVNG  GIAV
Sbjct: 61  AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 120

Query: 185 GMATNIPTHNL 195
           GMAT+IP H +
Sbjct: 121 GMATSIPPHRM 131


>gi|219921029|emb|CAQ76692.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 127

 Score =  272 bits (694), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/127 (62%), Positives = 100/127 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HN
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHN 120

Query: 195 LGEVVDG 201
           L EV++G
Sbjct: 121 LTEVING 127


>gi|219921025|emb|CAQ76690.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 124

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/124 (62%), Positives = 95/124 (76%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA R
Sbjct: 1   AYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATN
Sbjct: 61  YTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATN 120

Query: 190 IPTH 193
           IP H
Sbjct: 121 IPPH 124


>gi|49532775|dbj|BAD26625.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532777|dbj|BAD26626.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532779|dbj|BAD26627.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532781|dbj|BAD26628.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532783|dbj|BAD26629.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532787|dbj|BAD26631.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532789|dbj|BAD26632.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532793|dbj|BAD26634.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532795|dbj|BAD26635.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532797|dbj|BAD26636.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532805|dbj|BAD26640.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532807|dbj|BAD26641.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  272 bits (694), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/132 (56%), Positives = 101/132 (76%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+A++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDASVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|49532769|dbj|BAD26622.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532771|dbj|BAD26623.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532773|dbj|BAD26624.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532785|dbj|BAD26630.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532799|dbj|BAD26637.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532801|dbj|BAD26638.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532803|dbj|BAD26639.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532811|dbj|BAD26643.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532813|dbj|BAD26644.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532815|dbj|BAD26645.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532817|dbj|BAD26646.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532819|dbj|BAD26647.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|49532821|dbj|BAD26648.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 100/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|78771376|gb|ABB51163.1| GyrA [Escherichia coli]
          Length = 128

 Score =  271 bits (693), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/122 (60%), Positives = 100/122 (81%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7   EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE R
Sbjct: 67  ARVVGDVIGKYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIR 126

Query: 135 LQ 136
           L 
Sbjct: 127 LA 128


>gi|11761820|gb|AAG40200.1|AF303589_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761826|gb|AAG40203.1|AF303592_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761828|gb|AAG40204.1|AF303593_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761830|gb|AAG40205.1|AF303594_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761832|gb|AAG40206.1|AF303595_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761836|gb|AAG40208.1|AF303597_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761838|gb|AAG40209.1|AF303598_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761842|gb|AAG40211.1|AF303600_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761846|gb|AAG40213.1|AF303602_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761854|gb|AAG40217.1|AF303606_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761856|gb|AAG40218.1|AF303607_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761880|gb|AAG40230.1|AF303619_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761882|gb|AAG40231.1|AF303620_1 DNA gyrase subunit A [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
 gi|82654968|emb|CAJ19550.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654970|emb|CAJ19551.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654972|emb|CAJ19552.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654974|emb|CAJ19553.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654976|emb|CAJ19554.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654978|emb|CAJ19555.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654980|emb|CAJ19556.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654982|emb|CAJ19557.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654984|emb|CAJ19558.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654986|emb|CAJ19559.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654988|emb|CAJ19560.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654990|emb|CAJ19561.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654992|emb|CAJ19562.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654994|emb|CAJ19563.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654996|emb|CAJ19564.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82654998|emb|CAJ19565.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655000|emb|CAJ19566.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655002|emb|CAJ19567.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655004|emb|CAJ19568.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655006|emb|CAJ19569.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655008|emb|CAJ19570.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655010|emb|CAJ19571.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655012|emb|CAJ19572.1| DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|82655014|emb|CAJ19573.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  271 bits (692), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 99/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|15278103|gb|AAK94038.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 128

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 92/127 (72%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   D
Sbjct: 2   GFRPDRSHAKSARSVAEAMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGND 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPAA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIA
Sbjct: 62  PPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIA 121

Query: 184 VGMATNI 190
           VGMATNI
Sbjct: 122 VGMATNI 128


>gi|12585585|gb|AAG49418.1| gyrase [Staphylococcus hominis subsp. novobiosepticus]
          Length = 126

 Score =  271 bits (692), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/125 (58%), Positives = 97/125 (77%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   +IT+EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K 
Sbjct: 1   RINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 60

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           ARI G+VMGKYHPHG+ +IYDA+ RMAQ +S R  L++GQGNFGS+DGD  AA RYTE +
Sbjct: 61  ARIVGDVMGKYHPHGDFSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAK 120

Query: 135 LQKAA 139
           + K  
Sbjct: 121 MTKIT 125


>gi|311352804|gb|ADP93587.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352806|gb|ADP93588.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352808|gb|ADP93589.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352810|gb|ADP93590.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352816|gb|ADP93593.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352822|gb|ADP93596.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352824|gb|ADP93597.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352826|gb|ADP93598.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352828|gb|ADP93599.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352830|gb|ADP93600.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352832|gb|ADP93601.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352834|gb|ADP93602.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352836|gb|ADP93603.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352838|gb|ADP93604.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352840|gb|ADP93605.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352842|gb|ADP93606.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352846|gb|ADP93608.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352852|gb|ADP93611.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352856|gb|ADP93613.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352858|gb|ADP93614.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352862|gb|ADP93616.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352864|gb|ADP93617.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352866|gb|ADP93618.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352868|gb|ADP93619.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352870|gb|ADP93620.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352878|gb|ADP93624.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352880|gb|ADP93625.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352882|gb|ADP93626.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352884|gb|ADP93627.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352886|gb|ADP93628.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352894|gb|ADP93632.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352896|gb|ADP93633.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352898|gb|ADP93634.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352900|gb|ADP93635.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352904|gb|ADP93637.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352906|gb|ADP93638.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352908|gb|ADP93639.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352910|gb|ADP93640.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352912|gb|ADP93641.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352914|gb|ADP93642.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352916|gb|ADP93643.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352918|gb|ADP93644.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352920|gb|ADP93645.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352922|gb|ADP93646.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352924|gb|ADP93647.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352926|gb|ADP93648.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352928|gb|ADP93649.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352930|gb|ADP93650.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352932|gb|ADP93651.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352934|gb|ADP93652.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352936|gb|ADP93653.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352938|gb|ADP93654.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352940|gb|ADP93655.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352942|gb|ADP93656.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352944|gb|ADP93657.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352946|gb|ADP93658.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352948|gb|ADP93659.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352950|gb|ADP93660.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352952|gb|ADP93661.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352954|gb|ADP93662.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352956|gb|ADP93663.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352960|gb|ADP93665.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352962|gb|ADP93666.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352966|gb|ADP93668.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352968|gb|ADP93669.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352970|gb|ADP93670.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352972|gb|ADP93671.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352974|gb|ADP93672.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352978|gb|ADP93674.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352980|gb|ADP93675.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352984|gb|ADP93677.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352988|gb|ADP93679.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352994|gb|ADP93682.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352996|gb|ADP93683.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352998|gb|ADP93684.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353004|gb|ADP93687.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353006|gb|ADP93688.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353008|gb|ADP93689.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353010|gb|ADP93690.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353014|gb|ADP93692.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353016|gb|ADP93693.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353022|gb|ADP93696.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353024|gb|ADP93697.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353026|gb|ADP93698.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353028|gb|ADP93699.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353042|gb|ADP93706.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353044|gb|ADP93707.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353048|gb|ADP93709.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353050|gb|ADP93710.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353052|gb|ADP93711.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353054|gb|ADP93712.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353056|gb|ADP93713.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353058|gb|ADP93714.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353062|gb|ADP93716.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353064|gb|ADP93717.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353066|gb|ADP93718.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353068|gb|ADP93719.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353070|gb|ADP93720.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353072|gb|ADP93721.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353074|gb|ADP93722.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353076|gb|ADP93723.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353078|gb|ADP93724.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353080|gb|ADP93725.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  270 bits (691), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 173/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQVLNLKQVLVHYIN 231


>gi|311353018|gb|ADP93694.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353020|gb|ADP93695.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 173/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMAYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 231


>gi|297242233|gb|ADI24789.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 89/182 (48%), Positives = 127/182 (69%), Gaps = 4/182 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K  R   +  GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   QKSGRAVRDGFGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           YTE RL K +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+
Sbjct: 60  YTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATD 119

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSI 248
           IP HN+ E+ D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRGS+
Sbjct: 120 IPPHNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSV 179

Query: 249 VI 250
           ++
Sbjct: 180 IV 181


>gi|311352854|gb|ADP93612.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 173/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 231


>gi|311352812|gb|ADP93591.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352814|gb|ADP93592.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352818|gb|ADP93594.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352820|gb|ADP93595.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352844|gb|ADP93607.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352848|gb|ADP93609.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352850|gb|ADP93610.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352860|gb|ADP93615.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352872|gb|ADP93621.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352874|gb|ADP93622.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352876|gb|ADP93623.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352888|gb|ADP93629.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352890|gb|ADP93630.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352892|gb|ADP93631.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352902|gb|ADP93636.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352958|gb|ADP93664.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352964|gb|ADP93667.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352976|gb|ADP93673.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352982|gb|ADP93676.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352986|gb|ADP93678.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352990|gb|ADP93680.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311352992|gb|ADP93681.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353000|gb|ADP93685.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353002|gb|ADP93686.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353012|gb|ADP93691.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353030|gb|ADP93700.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353032|gb|ADP93701.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353034|gb|ADP93702.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353036|gb|ADP93703.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353038|gb|ADP93704.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353040|gb|ADP93705.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353046|gb|ADP93708.1| DNA gyrase subunit A [Clostridium perfringens]
 gi|311353060|gb|ADP93715.1| DNA gyrase subunit A [Clostridium perfringens]
          Length = 231

 Score =  270 bits (691), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 126/232 (54%), Positives = 173/232 (74%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ K+TVDF PN+DG  +EPVVL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG +A+IDNP++    LM  I+GPDFPT  +I+G++GI+ AY TG+G IV+R
Sbjct: 61  PHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIMGKSGIRAAYETGKGRIVVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+    R +I+VTE+PYQVNKA ++E IA+LV++K+I  I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGMRMV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELKR A+ +V LN LY++T +Q  F V M+AL   +P+   L  +L  ++ 
Sbjct: 180 IELKRDANPNVTLNLLYKHTKMQDTFGVIMLALVDNQPQILNLKQVLVHYIN 231


>gi|313600326|gb|ADR71659.1| DNA gyrase subunit A [Salmonella sp. ES-B43]
          Length = 128

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/128 (58%), Positives = 98/128 (76%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LCARYPNV 174
           +  + PN+
Sbjct: 121 MPTKIPNL 128


>gi|11761824|gb|AAG40202.1|AF303591_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761844|gb|AAG40212.1|AF303601_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761858|gb|AAG40219.1|AF303608_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|60416654|emb|CAI43396.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416656|emb|CAI43397.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416660|emb|CAI43399.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416662|emb|CAI43400.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416664|emb|CAI43401.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416666|emb|CAI43402.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416668|emb|CAI43403.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416670|emb|CAI43404.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416672|emb|CAI43405.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416674|emb|CAI43406.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416676|emb|CAI43407.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416678|emb|CAI43408.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416680|emb|CAI43409.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416684|emb|CAI43411.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  270 bits (690), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|296253498|gb|ADH04210.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  270 bits (689), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/140 (53%), Positives = 102/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|329942344|ref|ZP_08291154.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|313847582|emb|CBY16570.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila psittaci RD1]
 gi|325506857|gb|ADZ18495.1| DNA topoisomerase IV subunit A [Chlamydophila psittaci 6BC]
 gi|328815254|gb|EGF85242.1| DNA gyrase/topoisomerase IV, subunit A family protein
           [Chlamydophila psittaci Cal10]
 gi|328914216|gb|AEB55049.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila psittaci 6BC]
          Length = 479

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 222/502 (44%), Gaps = 43/502 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA---NKGY-LIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++N    L         PDF +G V+       + Y  G GSI +R       
Sbjct: 173 IEAQIAILNNRAFTLL--------PDFYSGGVMD-----ASEYQDGLGSITMRASIQTVD 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D+    + I+L +G 
Sbjct: 220 QK----TLIIKEICPSTTTETLIRSIENAAKRGVIKIDSIQDFSTDQP--HIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  I+  L+++T  Q + +    A+   KP   ++  ILK      E  + +  +  L+
Sbjct: 274 YAKDIIEPLFQHTECQVVLTSRPTAIYNNKPIETSVSEILKLHTEVLEGYLQQELQI-LH 332

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
               + H    L         +   +R          E + +  N    +DL + +  + 
Sbjct: 333 DELAQEHYYKSLEYIF-IKHRLYDTVR----------ENLSKLKNKVSQEDLHEAVLTAL 381

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               S      S+  T  +  L + ++     +    +L ++  +       LS+  +  
Sbjct: 382 APFLSSLPEIPSKQATGQLASLAIKKILCFNENSYTKDLATIEKKQAAVKKDLSNMKKFT 441

Query: 499 GIIKQELLSVKDELDTPRRTRI 520
               + LL+   EL   R+T++
Sbjct: 442 IKYLKGLLAKYGELG-KRKTQV 462


>gi|11761822|gb|AAG40201.1|AF303590_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761840|gb|AAG40210.1|AF303599_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761874|gb|AAG40227.1|AF303616_1 DNA gyrase subunit A [Raoultella planticola]
 gi|11761876|gb|AAG40228.1|AF303617_1 DNA gyrase subunit A [Raoultella terrigena]
 gi|11761878|gb|AAG40229.1|AF303618_1 DNA gyrase subunit A [Raoultella ornithinolytica]
 gi|11761884|gb|AAG40232.1|AF303621_1 DNA gyrase subunit A [Raoultella planticola]
          Length = 127

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|33469558|gb|AAQ19804.1| topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 136

 Score =  269 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/136 (55%), Positives = 99/136 (72%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ +IYDA+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + 
Sbjct: 61  QDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTE 120

Query: 162 QEPVVLCARYPNVLVN 177
           +EP VL A +PN+LVN
Sbjct: 121 KEPTVLPAAFPNLLVN 136


>gi|89898786|ref|YP_515896.1| DNA topoisomerase IV subunit A [Chlamydophila felis Fe/C-56]
 gi|89332158|dbj|BAE81751.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56]
          Length = 479

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 121/389 (31%), Positives = 186/389 (47%), Gaps = 32/389 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
             ++D  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+
Sbjct: 2   QDVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIA 58

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQK 137
           G  M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL  
Sbjct: 59  GRTMA-LHPHGDAPIVEALVVLA---NKGY-LIDTQGNFGNPLTGDPHAAARYIEARLSP 113

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E
Sbjct: 114 LAKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYE 171

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           +++  +A+++N    L         PDF +G V+       + Y  G GSI IR    I 
Sbjct: 172 LIEAQIAILNNRTFTLL--------PDFYSGGVMD-----ASEYQDGLGSITIRASIQIV 218

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
            +      +++ EI        ++  I    +   I   +     +D+    + I+L +G
Sbjct: 219 DSK----TLIIKEICPSTTTETLIRSIENAAKRGVIKIDSIQDFSTDQP--HIEIKLPKG 272

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLL 377
             A  IL  L++YT  Q + +    A+   KP   ++  ILK      E  + +  +  L
Sbjct: 273 IYAKDILEPLFQYTECQVVLTSKPTAIYNNKPVETSISEILKLHTEALEGYLQKELQI-L 331

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           +    + H    L         +  I+R 
Sbjct: 332 HDELAQEHYYKSLEYIF-IKHRLYDIVRE 359


>gi|296253492|gb|ADH04207.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253500|gb|ADH04211.1| topoisomerase IV subunit A [Gallibacterium anatis]
 gi|296253504|gb|ADH04213.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|49532791|dbj|BAD26633.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  269 bits (687), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 100/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|62184673|ref|YP_219458.1| DNA topoisomerase IV subunit A [Chlamydophila abortus S26/3]
 gi|62147740|emb|CAH63484.1| putative DNA gyrase subunit A or topoisomerase IV subunit A
           [Chlamydophila abortus S26/3]
          Length = 479

 Score =  268 bits (686), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 115/376 (30%), Positives = 178/376 (47%), Gaps = 31/376 (8%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ +  M    + K  K A I+G
Sbjct: 3   DVSELFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFCMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M   HPHG+A I +AL  +A   +    LI+ QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA---NKGY-LIDMQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A  +L     D + F  +YDG  +EP +L A+ P +L++G  GIAVGM T I  HNL E+
Sbjct: 115 AKEIL--FNTDLMSFHDSYDGRDKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLCEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           ++  +A+++N    L         PDF +G V+       + Y  G GSI +R       
Sbjct: 173 IEAQIAILNNRAFTLL--------PDFYSGGVMD-----ASEYQDGLGSITMRASIQTVD 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D+    + I+L +G 
Sbjct: 220 QK----TLIIKEICPSTTTETLIRSIENAAKRGVIKIDSIQDFSTDQP--HIEIKLPKGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A  I+  L++YT  Q + +    A+   KP   ++  ILK      E  + +  +  L 
Sbjct: 274 YAKDIIEPLFQYTECQVVLTSRPTAIYNNKPVETSISEILKLHTEVLEGYLQKELEI-LQ 332

Query: 379 KARDRAHVLVGLAIAV 394
               + H    L    
Sbjct: 333 DELAQEHYYKSLEYIF 348


>gi|296253496|gb|ADH04209.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/140 (53%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y A+  MAQ +S R  L
Sbjct: 1   PVHRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|11761850|gb|AAG40215.1|AF303604_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|209163761|gb|ACI40588.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163763|gb|ACI40589.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163765|gb|ACI40590.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163767|gb|ACI40591.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163769|gb|ACI40592.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163771|gb|ACI40593.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163773|gb|ACI40594.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163775|gb|ACI40595.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163777|gb|ACI40596.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163779|gb|ACI40597.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163781|gb|ACI40598.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163783|gb|ACI40599.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163785|gb|ACI40600.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163787|gb|ACI40601.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163789|gb|ACI40602.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163791|gb|ACI40603.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163793|gb|ACI40604.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163795|gb|ACI40605.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163797|gb|ACI40606.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163799|gb|ACI40607.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163801|gb|ACI40608.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163803|gb|ACI40609.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163805|gb|ACI40610.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163807|gb|ACI40611.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163809|gb|ACI40612.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163811|gb|ACI40613.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163813|gb|ACI40614.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163815|gb|ACI40615.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163817|gb|ACI40616.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163819|gb|ACI40617.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163821|gb|ACI40618.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163823|gb|ACI40619.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163825|gb|ACI40620.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163827|gb|ACI40621.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163829|gb|ACI40622.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163831|gb|ACI40623.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163833|gb|ACI40624.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163835|gb|ACI40625.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163837|gb|ACI40626.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163839|gb|ACI40627.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163841|gb|ACI40628.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163843|gb|ACI40629.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163845|gb|ACI40630.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163847|gb|ACI40631.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163849|gb|ACI40632.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163851|gb|ACI40633.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163853|gb|ACI40634.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163855|gb|ACI40635.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163857|gb|ACI40636.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163859|gb|ACI40637.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163863|gb|ACI40639.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163867|gb|ACI40641.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163869|gb|ACI40642.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163873|gb|ACI40644.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163875|gb|ACI40645.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163877|gb|ACI40646.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163879|gb|ACI40647.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163881|gb|ACI40648.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163883|gb|ACI40649.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163885|gb|ACI40650.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163887|gb|ACI40651.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163889|gb|ACI40652.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163891|gb|ACI40653.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163893|gb|ACI40654.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163895|gb|ACI40655.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163901|gb|ACI40658.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163903|gb|ACI40659.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163905|gb|ACI40660.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163907|gb|ACI40661.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163909|gb|ACI40662.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163911|gb|ACI40663.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163913|gb|ACI40664.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163915|gb|ACI40665.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163917|gb|ACI40666.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163919|gb|ACI40667.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163921|gb|ACI40668.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163923|gb|ACI40669.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163925|gb|ACI40670.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163927|gb|ACI40671.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163929|gb|ACI40672.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163931|gb|ACI40673.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163933|gb|ACI40674.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163935|gb|ACI40675.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163937|gb|ACI40676.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163939|gb|ACI40677.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163941|gb|ACI40678.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163949|gb|ACI40682.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163951|gb|ACI40683.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163953|gb|ACI40684.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163957|gb|ACI40686.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163959|gb|ACI40687.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163961|gb|ACI40688.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163963|gb|ACI40689.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163965|gb|ACI40690.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163967|gb|ACI40691.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163969|gb|ACI40692.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163975|gb|ACI40695.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  268 bits (685), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/232 (53%), Positives = 177/232 (76%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTV+F PN+DG  +EP VL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM +I+GPDFPTGA I+G++GI+ AY TG+G +++R
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIMGKSGIRAAYETGKGRVIVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + IE+   +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR+G R+V
Sbjct: 121 AKAEIEE-ENNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELK+ A+ +V+LN LY++T +Q  F V M+AL   +P+   +  +L  +++
Sbjct: 180 IELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNEPQVLNIKQVLNYYIS 231


>gi|11761852|gb|AAG40216.1|AF303605_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761868|gb|AAG40224.1|AF303613_1 DNA gyrase subunit A [Klebsiella oxytoca]
 gi|11761872|gb|AAG40226.1|AF303615_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|11761862|gb|AAG40221.1|AF303610_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|261871070|gb|ACY02504.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/125 (62%), Positives = 99/125 (79%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|330444050|ref|YP_004377036.1| DNA gyrase/topoisomerase IV subunit A [Chlamydophila pecorum E58]
 gi|328807160|gb|AEB41333.1| DNA gyrase/topoisomerase IV, A subunit [Chlamydophila pecorum E58]
          Length = 474

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 127/500 (25%), Positives = 208/500 (41%), Gaps = 33/500 (6%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            +++  +  ++ YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DVSELFKTQFMHYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKA 138
             M  +HPHG+AAI +AL  +A   +    LIE QGNFG+ + GDP AA RY E RL   
Sbjct: 60  RTMA-FHPHGDAAIIEALVVLA---NKGY-LIETQGNFGNPLTGDPHAAARYIEARLSPL 114

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
           A   L     D +  + +YDG  QEP  L ++ P +L++G  GIAVGM T I  HN  E+
Sbjct: 115 AKETL--FNTDLMCMQDSYDGRDQEPKTLPSKLPLLLLHGVDGIAVGMMTKIFPHNFSEL 172

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +   +A++ N    L         PDFP+GA++         Y  G GS+++R    I  
Sbjct: 173 IQAQIALLKNRPFTLL--------PDFPSGALMD-----ATQYQDGLGSVLLRAKIQILD 219

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                  +++ EI        ++  I    +   I   +     +D     + I+L RG 
Sbjct: 220 DK----TLLIQEICPSTTTETLIHSIENAAKRGVIKIDSIQDFSTDLP--HIEIKLPRGV 273

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            A+ +L  L+ +T  Q        A++ + P   ++  ILK      +E + +    LL 
Sbjct: 274 HAEALLPALFEHTECQVELFSRPTAIHHHSPIECSVSTILKFHTEALQEYLQK-ELQLLL 332

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           +  +R H    L         +   +R   +  T   +        S +   +  +    
Sbjct: 333 EQLEREHYHKSLEYLF-IKHRLYDPVRERLSKATRVSQEHIHQTILSVLAPWLPELPALP 391

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
               +     L+  +     E    +      +  +  +      IKE            
Sbjct: 392 TKADTGQLASLTIRKILCFREETYKKEISA-LEKKQLAVKKDLSRIKEYTIKYLQDLLNR 450

Query: 499 GIIKQELLSVKDELDTPRRT 518
                +  +   +    R+T
Sbjct: 451 YAHLGKRKTQITQFKNQRKT 470


>gi|296253502|gb|ADH04212.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 100/140 (71%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYGAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|11761848|gb|AAG40214.1|AF303603_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/127 (61%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|61657493|emb|CAI44405.1| ATP-dependent Clp protease, ATPase subunit [Thermotoga sp. KOL6]
          Length = 652

 Score =  268 bits (684), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 138/512 (26%), Positives = 231/512 (45%), Gaps = 74/512 (14%)

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              +A    + +   + FS +          R      +K L+ ++      I     ++
Sbjct: 213 QRIVAGDVPEILKNKVIFSLDVAALVAGTKYRGEFEKRMKKLLQIVTKDKNII-----LF 267

Query: 449 LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
           + E+ T          +       +         +I E  +IL    ++  I+K+E   +
Sbjct: 268 IDEIHTIVGAGSAEGAIDAANILKL-------VKKISEVKEILEKDVKVKEIMKKEFKYL 320

Query: 509 KDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSG 568
           K+    PRRT+I +  L  + E+ I  ED+V+T+SH GY+K  PLS YR+QRRGGKG + 
Sbjct: 321 KERYGDPRRTKITDEELRYDMEELIAEEDIVITLSHKGYLKSTPLSSYRSQRRGGKGITV 380

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             + ++D V  + +    +S LF ++LG  Y  K +++       RG+ +   L+L + E
Sbjct: 381 SKLSEDDEVEFVVVTKNISSTLFITNLGKAYVLKNYQIETTGRNTRGRHISAFLNLEETE 440

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN-RSGKIAMKLDSRDEILSV 687
           ++  + P            +V  TKHG ++R  L +F       G  A+++++ DEI+S 
Sbjct: 441 KVVALAPLN-----GKGKDLVIVTKHGKIKRTALEEFENATSNRGVRAIRIEAGDEIISA 495

Query: 688 ETCTQEN-DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
                E   +++ TKLG  +RFP+S +R   GRN+ GV+ I L   D+V+SM +V     
Sbjct: 496 RVIDSERGSLVVATKLGMVIRFPVSDVRRM-GRNAAGVQAIKLQPDDEVVSMDVVP---- 550

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                             E  ILTV+EK
Sbjct: 551 -----------------------------------------------SENEGEILTVTEK 563

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           GFGKRT    +RI  R G G+R    S + + G +VAV  V  +++I++V+  G +IR+P
Sbjct: 564 GFGKRTPVELYRIQKRGGTGLRNI--SDVKKTGYVVAVRYVRGDEEIVVVTKNGMMIRIP 621

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           V++I I  R TKGV +     D+ +  V  ++
Sbjct: 622 VSDIGIIGRITKGVKLIELG-DDSISKVAVVK 652



 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/257 (17%), Positives = 99/257 (38%), Gaps = 15/257 (5%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +     +    R+     +L    E L      +E+ ++  +  G     P+S+ R   
Sbjct: 317 FKYLKERYGDPRRTKITDEELRYDMEELIA----EEDIVITLSHKGYLKSTPLSSYRS-Q 371

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS-GDTEEITSLK 776
            R   G+    L++ D+V  + +  +  +          ++    ++ + G       + 
Sbjct: 372 RRGGKGITVSKLSEDDEVEFVVVTKNISSTLFITNLGKAYVLKNYQIETTGRNTRGRHIS 431

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR--ISNRSGKGIRATDVSK 834
              ++E          L  K + ++ V++ G  KRT+  +F    SNR   G+RA  +  
Sbjct: 432 AFLNLEETEKVVALAPLNGKGKDLVIVTKHGKIKRTALEEFENATSNR---GVRAIRI-- 486

Query: 835 INEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVS 893
                 +++   ++     +++ +  G +IR PV+++R   R   GV       D+ VVS
Sbjct: 487 -EAGDEIISARVIDSERGSLVVATKLGMVIRFPVSDVRRMGRNAAGVQAIKLQPDDEVVS 545

Query: 894 VERIRESEIVDEAESTE 910
           ++ +      +    TE
Sbjct: 546 MDVVPSENEGEILTVTE 562


>gi|49532809|dbj|BAD26642.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 132

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/132 (54%), Positives = 99/132 (75%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++Y A+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYYAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V+  
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPT 120

Query: 170 RYPNVLVNGGGG 181
           + P +L+NG  G
Sbjct: 121 KVPTLLINGATG 132


>gi|296253494|gb|ADH04208.1| topoisomerase IV subunit A [Gallibacterium anatis]
          Length = 139

 Score =  267 bits (683), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/140 (52%), Positives = 102/140 (72%), Gaps = 3/140 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVHRRLIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDRACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ TVD++PN+DG+  EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKISELLLSELGQGTVDYQPNFDGTLDEPQYLP 119

Query: 169 ARYPNVLVNGGGGIAVGMAT 188
           AR P++L+NG  GIAVGMAT
Sbjct: 120 ARLPHILLNGTTGIAVGMAT 139


>gi|209163861|gb|ACI40638.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163865|gb|ACI40640.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163871|gb|ACI40643.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163897|gb|ACI40656.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163899|gb|ACI40657.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163943|gb|ACI40679.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163945|gb|ACI40680.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163947|gb|ACI40681.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163955|gb|ACI40685.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163971|gb|ACI40693.1| DNA gyrase subunit A [Clostridium septicum]
 gi|209163973|gb|ACI40694.1| DNA gyrase subunit A [Clostridium septicum]
          Length = 231

 Score =  267 bits (681), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 125/232 (53%), Positives = 177/232 (76%), Gaps = 1/232 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E ++ K A  +L D+ KDTV+F PN+DG  +EP VL +RYPN+LVNG  GIAVGMATNIP
Sbjct: 1   EAKMNKIAAEMLRDINKDTVNFIPNFDGEEKEPEVLPSRYPNLLVNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            HNLGEV+DG + +IDNP+  +  LM +I+GPDFPTGA I+G++GI+ AY TG+G +++R
Sbjct: 61  PHNLGEVIDGTIMLIDNPESTILELMTVIKGPDFPTGATIMGKSGIRAAYETGKGRVIVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             S IE+   +R +I+VTEIPYQVNKA ++E IA+LV++K+IV I+DLRDESDR+G R+V
Sbjct: 121 AKSEIEE-ENNRHRIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDREGMRIV 179

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
           IELK+ A+ +V+LN LY++T +Q  F V M+AL   +P+   +  +L  +++
Sbjct: 180 IELKKDANPNVVLNLLYKHTKMQDTFGVIMLALVNNEPQVLNIKQVLNYYIS 231


>gi|11761870|gb|AAG40225.1|AF303614_1 DNA gyrase subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  267 bits (681), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYGTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|60416658|emb|CAI43398.1| DNA gyrase, subunit A [Klebsiella oxytoca]
 gi|60416682|emb|CAI43410.1| DNA gyrase, subunit A [Klebsiella oxytoca]
          Length = 127

 Score =  267 bits (681), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE R+ K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|321268280|gb|ADW78948.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  266 bits (680), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/239 (35%), Positives = 126/239 (52%), Gaps = 26/239 (10%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           ++T +  HN  E++D  + ++      +         PDF T  +        + Y  G
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFTIY--------PDFQTAGIAD-----VSNYNDG 263


>gi|11761834|gb|AAG40207.1|AF303596_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761860|gb|AAG40220.1|AF303609_1 DNA gyrase subunit A [Klebsiella pneumoniae]
 gi|11761864|gb|AAG40222.1|AF303611_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  266 bits (679), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 98/127 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|321268264|gb|ADW78940.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 261

 Score =  265 bits (678), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 21/227 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           ++T +  HN  E++D  + ++      +         PDF T  +  
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFTIY--------PDFQTAGIAD 256


>gi|321268282|gb|ADW78949.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 263

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 21/227 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           ++T +  HN  E++D  + ++      +         PDF T  +  
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFTIY--------PDFQTAGIAD 256


>gi|321268266|gb|ADW78941.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268268|gb|ADW78942.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268270|gb|ADW78943.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268272|gb|ADW78944.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268274|gb|ADW78945.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268276|gb|ADW78946.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268278|gb|ADW78947.1| topoisomerase IV [Flavobacterium psychrophilum]
 gi|321268284|gb|ADW78950.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 262

 Score =  265 bits (677), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 21/227 (9%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
           ++T +  HN  E++D  + ++      +         PDF T  +  
Sbjct: 218 LSTKVLPHNFNELIDASIKILKGKPFTIY--------PDFQTAGIAD 256


>gi|224178753|ref|XP_002198897.1| PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603,
           partial [Taeniopygia guttata]
          Length = 424

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 108/405 (26%), Positives = 179/405 (44%), Gaps = 54/405 (13%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           Q+ +L YA  VIL RA+P++ DGLKPV RRIL  M    +  + ++ K A I G  M ++
Sbjct: 52  QSWFLDYASYVILERAVPNIEDGLKPVQRRILHSM---KLLDDGRFNKVANIVGNTM-QF 107

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS-VDGDPPAAERYTECRLQKAAHFLLD 144
           HPHG+A+IY+AL ++ Q    + LL+E QGN+G+ + G   AA RY E RL + A  ++ 
Sbjct: 108 HPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYIEARLSQFALDVVY 163

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
                  ++  +                        GIAVG+++ I  HN  E++D  ++
Sbjct: 164 --NPKVTEWTLS----------------------AEGIAVGLSSKILPHNFNEIIDAAIS 199

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR--GSIVIRGVSHIEKTSGD 262
            +      L         PDF TG  I       + Y  G   G + IR          D
Sbjct: 200 YLRGEPFTLY--------PDFFTGGSID-----VSRYNDGERGGVVKIRAKIE----KID 242

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            + + +TEIPY    A ++E I +     +I   + + + +       ++ L  G S+D 
Sbjct: 243 NKTLAITEIPYGKTTATLIESIVKAQEAGKIKIRSVVDNTAQTANV--IVYLLPGTSSDK 300

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
            ++ LY +T  +   S N   ++  KP    +  +L+  V    +++ +  +  L + R+
Sbjct: 301 TIDALYAFTDCEVSVSPNCCVISDNKPHFIGVSDVLRHNVDRTRDILGQELRIQLGEVRE 360

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           + H      I +       +    S N E A   +  R     DI
Sbjct: 361 QLHFASLERIFIEERIYKDKGYEESENREQAIAHIRGRLEKFKDI 405


>gi|261871066|gb|ACY02502.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/125 (62%), Positives = 98/125 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|297242277|gb|ADI24811.1| DNA topoisomerase IV subunit A [Haemophilus influenzae]
          Length = 183

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/175 (50%), Positives = 126/175 (72%), Gaps = 4/175 (2%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQK 137
           +V GK+HP G++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K
Sbjct: 9   DVFGKFHPDGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSK 67

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            +  LL++LG+ TVD++PN+DG+  EP  L AR P++L+NG  GIAVGMAT+IP HN+ E
Sbjct: 68  ISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 127

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIR 251
           + D  V ++DNP   LD ++EI++GPDFPT   +I  ++ I+  Y  GRGS+++R
Sbjct: 128 IADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSVIVR 182


>gi|261871062|gb|ACY02500.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  265 bits (676), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 78/125 (62%), Positives = 98/125 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|261871072|gb|ACY02505.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 98/125 (78%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|11761866|gb|AAG40223.1|AF303612_1 DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 127

 Score =  264 bits (674), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/127 (60%), Positives = 97/127 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GI
Sbjct: 61  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGI 120

Query: 183 AVGMATN 189
           AVGMATN
Sbjct: 121 AVGMATN 127


>gi|1845587|emb|CAA55580.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 122

 Score =  263 bits (672), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/122 (60%), Positives = 95/122 (77%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SL
Sbjct: 1   DGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSL 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V
Sbjct: 61  RYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDV 120

Query: 167 LC 168
           + 
Sbjct: 121 MP 122


>gi|167945163|ref|ZP_02532237.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 210

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/210 (47%), Positives = 141/210 (67%), Gaps = 9/210 (4%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           MAQ +S R  L++GQGN+GS D DP   AA RYTE RL   +  LL +LG+ TV+++PN+
Sbjct: 2   MAQPFSYRYPLVDGQGNWGSPD-DPKSFAAMRYTESRLTPYSQVLLSELGQGTVEWQPNF 60

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ QEP +L AR PNVL+NG  GIAVGMAT+IP HNL EV   CV ++++P   LD L+
Sbjct: 61  DGTLQEPSLLPARLPNVLLNGSTGIAVGMATDIPPHNLREVAAACVHLLESPKASLDDLL 120

Query: 218 EIIRGPDFPT-GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
           + I+GPD+PT   +I     I+  Y +G+GSI +R     E+       I+VT +P+QV+
Sbjct: 121 DHIKGPDYPTEAEIITPPEEIRKIYVSGKGSIRMRARYEREQGE-----IIVTTLPHQVS 175

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            A +LE+IA  ++ K++  + DLRDESD +
Sbjct: 176 GARVLEQIAAQMQAKKLPMVEDLRDESDHE 205


>gi|261871064|gb|ACY02501.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  263 bits (671), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 97/125 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|163784169|ref|ZP_02179106.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880566|gb|EDP74133.1| DNA gyrase, A subunit [Hydrogenivirga sp. 128-5-R1-1]
          Length = 331

 Score =  262 bits (670), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 9/155 (5%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVK 73
             I    I +E++++YL YA++VI+GRAIPD+RDGLKPV RRIL+ M +  +  N+ Y K
Sbjct: 2   SEIIKQPIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKK 61

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR  G V+ KYHPHG++++YDAL RMAQD++LR  L++GQGNFGS+DGDPPAA RY   
Sbjct: 62  SARTVGNVIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPPAAMRYC-- 119

Query: 134 RLQKAAHFLLDDLGKDTV---DFRPNYDGSFQEPV 165
                    L +  K  V   D  PN   +   P+
Sbjct: 120 ----VVGDTLVNTDKGLVKIKDIVPNSKENTDNPI 150


>gi|218677864|ref|ZP_03525761.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 241

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 147/225 (65%), Positives = 177/225 (78%), Gaps = 1/225 (0%)

Query: 675 AMKLDS-RDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           AMKL+   DEILSVETCT+ +D+LLTT LGQC+RF +  +RVFAGRNS+GVRGI+L +GD
Sbjct: 1   AMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDVRVFAGRNSIGVRGINLGEGD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           ++ISM IV H DA+  ER  Y+K  +A+RR    D E+I  +  + + EG +S+ER + L
Sbjct: 61  RIISMTIVGHVDAEPWERAAYLKRSAAERRATGVDEEDIALVGEEVTEEGQLSDERYEVL 120

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           + +EQF+LTVSEKGFGKR+SSYDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI
Sbjct: 121 RNREQFVLTVSEKGFGKRSSSYDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQI 180

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIR 898
           +LVSD G LIRVPV  IRIASRATKGV IFST KDE+VVSVERI 
Sbjct: 181 MLVSDGGQLIRVPVGGIRIASRATKGVTIFSTHKDEKVVSVERIS 225


>gi|219921136|emb|CAQ76693.1| gyrase A subunit [Klebsiella oxytoca]
          Length = 119

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/119 (63%), Positives = 93/119 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 1   ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 60

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTH 193
           + K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP H
Sbjct: 61  MSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPH 119


>gi|62719469|gb|AAX93335.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 225

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 118/222 (53%), Positives = 165/222 (74%)

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  +L DL KDTVDF PNYDG+ +EPVVL AR PN+L+NG  GIAVGMATNIP 
Sbjct: 1   SRLSKISMEMLRDLNKDTVDFVPNYDGTEREPVVLPARIPNLLLNGATGIAVGMATNIPP 60

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           HNL EV+     ++ NPD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R 
Sbjct: 61  HNLTEVISAIHILMKNPDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRS 120

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
            + IE+    ++ I VTE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I
Sbjct: 121 KTDIEEDKNGKQTIAVTELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAI 180

Query: 313 ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
           +++R ASA+V+LN L++ T +Q+ FS NM+A+    P+  +L
Sbjct: 181 DIRRDASAEVVLNNLFKLTLMQTSFSFNMLAIIEGAPKILSL 222


>gi|261871068|gb|ACY02503.1| gyrase subunit A [Klebsiella pneumoniae]
          Length = 125

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/125 (61%), Positives = 97/125 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
           K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG  GIAVGMATNIP HNL 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNLT 120

Query: 197 EVVDG 201
           EV++G
Sbjct: 121 EVING 125


>gi|238810376|dbj|BAH70162.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810378|dbj|BAH70163.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810380|dbj|BAH70164.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810382|dbj|BAH70165.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810384|dbj|BAH70166.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810386|dbj|BAH70167.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810388|dbj|BAH70168.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810390|dbj|BAH70169.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810392|dbj|BAH70170.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810394|dbj|BAH70171.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810396|dbj|BAH70172.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810398|dbj|BAH70173.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810400|dbj|BAH70174.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810402|dbj|BAH70175.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810404|dbj|BAH70176.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810406|dbj|BAH70177.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810408|dbj|BAH70178.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810410|dbj|BAH70179.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810412|dbj|BAH70180.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810414|dbj|BAH70181.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810416|dbj|BAH70182.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810418|dbj|BAH70183.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810420|dbj|BAH70184.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810422|dbj|BAH70185.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810424|dbj|BAH70186.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810426|dbj|BAH70187.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810428|dbj|BAH70188.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810430|dbj|BAH70189.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810432|dbj|BAH70190.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810434|dbj|BAH70191.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810436|dbj|BAH70192.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810438|dbj|BAH70193.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810440|dbj|BAH70194.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810442|dbj|BAH70195.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810444|dbj|BAH70196.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810446|dbj|BAH70197.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810448|dbj|BAH70198.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810450|dbj|BAH70199.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810452|dbj|BAH70200.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810454|dbj|BAH70201.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810456|dbj|BAH70202.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810458|dbj|BAH70203.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  261 bits (666), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/137 (52%), Positives = 100/137 (72%), Gaps = 3/137 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLP 119

Query: 169 ARYPNVLVNGGGGIAVG 185
           AR P++L+NG  GIAVG
Sbjct: 120 ARLPHILLNGTMGIAVG 136


>gi|321268262|gb|ADW78939.1| topoisomerase IV [Flavobacterium psychrophilum]
          Length = 238

 Score =  260 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 13/198 (6%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            ++E  E  IT V  T   ++ +L YA  VIL RA+P + DG KPV RRI+  + ++   
Sbjct: 50  ENEENPEDTITKV--TGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHSLKELD-- 105

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPP 125
            + +Y K A + G  M +YHPHG+A+I DA+ ++ Q    R LLI+ QGN+G++  GD  
Sbjct: 106 -DGRYNKVANVVGHTM-QYHPHGDASIGDAMVQIGQ----RELLIDCQGNWGNILTGDSA 159

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RY E RL K A  +L        D+  +YDG   EP  L  ++P +L +G  GIAVG
Sbjct: 160 AASRYIEARLSKFALEVLY--SPKITDWGMSYDGRRAEPNNLPVKFPLLLASGAEGIAVG 217

Query: 186 MATNIPTHNLGEVVDGCV 203
           ++T +  HN  E++D  +
Sbjct: 218 LSTKVLPHNFNELIDASI 235


>gi|18874556|gb|AAL79843.1|AF473701_1 DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp.
           salmonicida]
          Length = 134

 Score =  260 bits (664), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/135 (51%), Positives = 98/135 (72%), Gaps = 3/135 (2%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++
Sbjct: 1   QRRIIYAMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVD 60

Query: 113 GQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           GQGN+G+ D DP   AA RYTE RL + +  LL +LG+ TVD+ PN+DG+ +EPVVL AR
Sbjct: 61  GQGNWGAPD-DPKSFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPAR 119

Query: 171 YPNVLVNGGGGIAVG 185
            P++L+NG  GIAVG
Sbjct: 120 LPHILLNGITGIAVG 134


>gi|282889677|ref|ZP_06298216.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500251|gb|EFB42531.1| hypothetical protein pah_c004o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 593

 Score =  260 bits (664), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 118/463 (25%), Positives = 203/463 (43%), Gaps = 47/463 (10%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPA 126
           + K  K A ++G+ M  YHPHG+A I +AL  MA     R  L++ QGNFG++  GDP A
Sbjct: 3   DGKLHKVANVAGQTMA-YHPHGDAPITEALVNMA----NRGYLLDQQGNFGNIFTGDPAA 57

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY E RL   A   L     D   + P+YDG  QEP+VL A+ P +L+ G  GIAVGM
Sbjct: 58  AARYIETRLAALAKETL--FNPDLTAYAPSYDGRHQEPIVLPAKIPLLLMQGATGIAVGM 115

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           +T+I  HN  E+++  +A++++ +  +         PDFPTG ++       + Y  GRG
Sbjct: 116 STSILPHNFEELLEAEIAILEDREFSV--------FPDFPTGGIMD-----ASDYNQGRG 162

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
            + +R    +         +V+TEI Y     +++  I E  +  +I    D  ++   +
Sbjct: 163 KVKLRAKIEVRDPK----TLVITEICYGTTTESLIRSIDEAAKRGKIKI--DAINDYTAE 216

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + I+L RG  A+ ++  LY YT  +      +V +    P    +  ILK      +
Sbjct: 217 KVEIEIKLPRGQYAEELIQALYAYTECEVAIHSQIVVIKDDLPWETDVDSILKLHAEKLQ 276

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           E +  R +  L + R +  +       +   + + + I  + + E     + +      D
Sbjct: 277 EYL--RIELELERDRFKEKIFAKTLEQIFIENRLYKNIENATSYEKVHEIIEKGLMPFHD 334

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
               I   DD                    +L + + R++    +   +E++++  ++ E
Sbjct: 335 QLTRIPHYDD-----------------REGLLSIPIRRISKFDLEKNLSEIHAIDKQLIE 377

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMED 529
               L +  +      + LL+   + D PRRT I         
Sbjct: 378 VEKHLKNVKKFTIHYLRGLLTKYAK-DYPRRTEITSIEEINMR 419


>gi|238810460|dbj|BAH70204.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810462|dbj|BAH70205.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810464|dbj|BAH70206.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810466|dbj|BAH70207.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810468|dbj|BAH70208.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810470|dbj|BAH70209.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810472|dbj|BAH70210.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810474|dbj|BAH70211.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810476|dbj|BAH70212.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810478|dbj|BAH70213.1| topoisomerase IV subunit A [Mannheimia haemolytica]
 gi|238810480|dbj|BAH70214.1| topoisomerase IV subunit A [Mannheimia haemolytica]
          Length = 136

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/137 (52%), Positives = 99/137 (72%), Gaps = 3/137 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE +L K A  LL +LG+ TVD++PN+DGS +EP  L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLP 119

Query: 169 ARYPNVLVNGGGGIAVG 185
           AR P++L+NG  GIAVG
Sbjct: 120 ARLPHILLNGTMGIAVG 136


>gi|23008103|ref|ZP_00049686.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 496

 Score =  258 bits (659), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 254/390 (65%), Positives = 298/390 (76%), Gaps = 1/390 (0%)

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           ++EKR+  I+DLRDESDR G R+V+ELKR A ADV+LNQLYRYT LQ+ F  NMVALNG 
Sbjct: 1   MKEKRLEGISDLRDESDRDGMRIVVELKRDAIADVVLNQLYRYTPLQTSFGANMVALNGG 60

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +PE   L  +L+AF  FREEVV RRTK+LLNKAR+RAHVL GLAIAVAN+DEV+R+IR S
Sbjct: 61  RPELMNLKDLLQAFNDFREEVVSRRTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTS 120

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
           P+P TAR  LM R W A DI  LI L+DD  + +  DGT  LSE Q RAIL+LRL RLT 
Sbjct: 121 PDPNTAREALMARDWPAHDIAPLIALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTA 180

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
           L RD+I +EL  L  EI + LDIL SR+R+  I+K EL  V++   TPR+T I++    +
Sbjct: 181 LXRDEIGDELKKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRKTEIIDSDFSV 240

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           EDED I REDMVVTVSH GYVKRVPLS YRAQ+RGGKGR+G+  RDEDFVT LF+ STHT
Sbjct: 241 EDEDLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRLFVASTHT 300

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG-ERITTIMPFPEDESSWNNL 646
            VLFFS  G  YKEKVWRLPI +P ARGKAL+NIL L    ERI+TIMP PEDE+SW  L
Sbjct: 301 PVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPEDEASWETL 360

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            V+FAT  GNVRRNKLSDF  +NR+GKIAM
Sbjct: 361 DVMFATASGNVRRNKLSDFTTVNRNGKIAM 390



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 10/174 (5%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +    ADY + +     + A  +    +  E+ +    + +  +      +
Sbjct: 187 GDEL---KKLADEIADYLDILRSRARIQAIVKSELAEVRELFATPRKTEIIDSDFSVEDE 243

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++TVS  G+ KR     +R   R GKG         + +  L   F  + + 
Sbjct: 244 DLIAREDMVVTVSHAGYVKRVPLSTYRAQKRGGKGRAGMATRDEDFVTRL---FVASTHT 300

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFST----AKDERVVSVERIRESE 901
            ++  SD+G   +  V  + IA+   +G  + +      + ER+ ++  + E E
Sbjct: 301 PVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILHLQNEGERISTIMPLPEDE 354



 Score = 53.3 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 14/179 (7%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    ++  I       DE L       E+ ++  +  G   R P+S  R    R  
Sbjct: 222 RELFATPRKTEIIDSDFSVEDEDLIAR----EDMVVTVSHAGYVKRVPLSTYRAQK-RGG 276

Query: 722 VGVRGISLAKGDQVISMAIVLH-------ADADYDERICYMKHMSAQRRLISGDTEEITS 774
            G  G++    D V  + +          +D     +    +   A           I  
Sbjct: 277 KGRAGMATRDEDFVTRLFVASTHTPVLFFSDQGQAYKEKVWRLPIAAPNARGKALVNILH 336

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
           L+N+      I      E   +   ++  +  G  +R    DF   NR+GK   A   S
Sbjct: 337 LQNEGERISTIMPLPEDEASWETLDVMFATASGNVRRNKLSDFTTVNRNGK--IAMXXS 393


>gi|213579808|ref|ZP_03361634.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 277

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 96/310 (30%), Positives = 161/310 (51%), Gaps = 59/310 (19%)

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            KV++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++ 
Sbjct: 1   MKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKT 57

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
            L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR 
Sbjct: 58  ALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRT 116

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSS 780
           + GVRGI LA  D+V+S+ I                                        
Sbjct: 117 ATGVRGIKLAGDDKVVSLII---------------------------------------- 136

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
                           E  ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G+
Sbjct: 137 -------------PRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GS 181

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           +V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E 
Sbjct: 182 VVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEP 241

Query: 901 EIVDEAESTE 910
              +E ++ +
Sbjct: 242 VDDEELDAID 251



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 86/246 (34%), Gaps = 15/246 (6%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            V   +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G 
Sbjct: 44  NVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGK 101

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K   +      A G   +  + L   +++ +++             ++  T++G  
Sbjct: 102 VVRFKEDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYG 152

Query: 658 RRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R    ++   +R+ +  + +        ++        + I++ T  G  VR  +S I 
Sbjct: 153 KRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI- 211

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I  A+ + V+ +  V     D +              +      +   
Sbjct: 212 SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVTEGDEDIAPEAESDDDV 271

Query: 775 LKNDSS 780
             +   
Sbjct: 272 ADDADE 277


>gi|330980279|gb|EGH78415.1| DNA gyrase subunit A [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 118

 Score =  258 bits (658), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/116 (62%), Positives = 93/116 (80%)

Query: 11  EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
           E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3   ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  A
Sbjct: 63  YKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAA 118


>gi|139439850|ref|ZP_01773215.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
 gi|133774778|gb|EBA38598.1| Hypothetical protein COLAER_02249 [Collinsella aerofaciens ATCC
           25986]
          Length = 339

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 121/373 (32%), Positives = 195/373 (52%), Gaps = 59/373 (15%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           MVVT++H GYVKR+P++ YRAQ+RGGKG SGV ++++D + ++FI STH  VLFFSS G 
Sbjct: 1   MVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEMFIASTHEYVLFFSSKGK 60

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           VY+ KV  LP+G+ QARG A++N+L   +GE+I +++   E      N Y++FATK G V
Sbjct: 61  VYRLKVHELPVGTRQARGTAIVNLLPFEEGEKIASVISCREFP---ANEYLMFATKSGMV 117

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           ++  +S + +  R G IA+ L   D +L+V    + + I+L T  G+ + F    +R   
Sbjct: 118 KKTVMSAYDRSRRDGLIAINLRDDDALLNVRRVREGDKIILATTAGKAIMFSEEQVRA-T 176

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR++ GVRGI +  G  V+ M                                       
Sbjct: 177 GRDTSGVRGIGMKDGVSVLGM--------------------------------------- 197

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
                         E+      +  ++E+G+GKRT   D+   NR G+G+    +++   
Sbjct: 198 --------------EVTNGNGDLFVITERGYGKRTPVADYPEQNRGGQGVYTIQMTER-- 241

Query: 838 IGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERI 897
            G L A+  V    ++ +V++  T+IRV  +EI    RAT+GV + +   ++R+ +V R+
Sbjct: 242 KGNLAAMKTVGPQHELFIVTEGATVIRVKTDEISQTGRATQGVKMMTVDDNDRICAVARM 301

Query: 898 RESEIVDEAESTE 910
             ++   E E  E
Sbjct: 302 TAAKEKPEGEGAE 314



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 88/250 (35%), Gaps = 15/250 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
               + ++  +  G VK+  +S Y   RR G     + +RD+D + ++  V     ++  
Sbjct: 102 FPANEYLMFATKSGMVKKTVMSAYDRSRRDG--LIAINLRDDDALLNVRRVREGDKIILA 159

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           ++ G        ++        G   I          +   +     E +  N  +   T
Sbjct: 160 TTAGKAIMFSEEQVRATGRDTSGVRGIG---------MKDGVSVLGMEVTNGNGDLFVIT 210

Query: 653 KHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQEND-ILLTTKLGQCVRFP 709
           + G  +R  ++D+        G   +++  R   L+          + + T+    +R  
Sbjct: 211 ERGYGKRTPVADYPEQNRGGQGVYTIQMTERKGNLAAMKTVGPQHELFIVTEGATVIRVK 270

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              I    GR + GV+ +++   D++ ++A +  A    +         + +  +  GD 
Sbjct: 271 TDEI-SQTGRATQGVKMMTVDDNDRICAVARMTAAKEKPEGEGAEAAADTEETPVDLGDG 329

Query: 770 EEITSLKNDS 779
            ++     D 
Sbjct: 330 NDMPEDLLDE 339


>gi|284192203|gb|ADB82821.1| DNA gyrase subunit A [Coxiella burnetii]
          Length = 121

 Score =  257 bits (657), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 91/121 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK   K ARI G+V+GKYHPHG+ A+Y  + RMAQ +SLR LLI+GQGNFGSVDGD PA
Sbjct: 1   WNKPNKKSARIVGDVIGKYHPHGDVAVYGTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE RL + AH L+ DL K+TVDF PNYD +   P VL  R PN+L+NG  GIAVGM
Sbjct: 61  AMRYTEIRLSRFAHALMADLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGM 120

Query: 187 A 187
           A
Sbjct: 121 A 121


>gi|297242375|gb|ADI24860.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  257 bits (655), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 93/122 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPTLLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|24475515|dbj|BAC22722.1| DNA gyrase subunit A [Wolbachia endosymbiont of Callosobruchus
           chinensis]
          Length = 124

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 82/122 (67%), Positives = 99/122 (81%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G    K Y   ARI G+VMGKYHPHG+AAIYD+L RMAQD+SL L L++GQGNFGS+DGD
Sbjct: 3   GYHAGKPYKNAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGD 62

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           PPA+ RYTE RL K +HFLL+D+ +DT+DFRPNYDG+  EPVVL A +PN+LVNG  G+A
Sbjct: 63  PPASMRYTEARLHKVSHFLLNDIDEDTLDFRPNYDGNETEPVVLPAEFPNLLVNGASGVA 122

Query: 184 VG 185
           VG
Sbjct: 123 VG 124


>gi|297242311|gb|ADI24828.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242317|gb|ADI24831.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242325|gb|ADI24835.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242329|gb|ADI24837.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242351|gb|ADI24848.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242353|gb|ADI24849.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242357|gb|ADI24851.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242359|gb|ADI24852.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242361|gb|ADI24853.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242363|gb|ADI24854.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242365|gb|ADI24855.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242367|gb|ADI24856.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242373|gb|ADI24859.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242377|gb|ADI24861.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242379|gb|ADI24862.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242381|gb|ADI24863.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  257 bits (655), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 93/122 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|83777805|gb|ABC47039.1| gyrase A subunit [Yersinia enterocolitica]
          Length = 107

 Score =  256 bits (653), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 90/107 (84%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SYL YA++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHP
Sbjct: 1   SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           HG++A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R
Sbjct: 61  HGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 107


>gi|269148270|gb|ACZ28506.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148290|gb|ACZ28516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148292|gb|ACZ28517.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148300|gb|ACZ28521.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148344|gb|ACZ28543.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148346|gb|ACZ28544.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148364|gb|ACZ28553.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148366|gb|ACZ28554.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148372|gb|ACZ28557.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148380|gb|ACZ28561.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148382|gb|ACZ28562.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148384|gb|ACZ28563.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148386|gb|ACZ28564.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148396|gb|ACZ28569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148432|gb|ACZ28587.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242355|gb|ADI24850.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242369|gb|ADI24857.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242371|gb|ADI24858.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  255 bits (652), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/122 (63%), Positives = 92/122 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|269148416|gb|ACZ28579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148422|gb|ACZ28582.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148444|gb|ACZ28593.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148446|gb|ACZ28594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|294765294|gb|ADF35684.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242307|gb|ADI24826.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242333|gb|ADI24839.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  254 bits (649), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/120 (63%), Positives = 92/120 (76%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 2   KKYVKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|4240541|gb|AAD13612.1| DNA gyrase A [Acinetobacter baumannii]
 gi|28629426|gb|AAO32076.1| DNA gyrase [Acinetobacter genomosp. 3]
 gi|28629430|gb|AAO32078.1| DNA gyrase [Acinetobacter genomosp. 13]
          Length = 115

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/115 (64%), Positives = 91/115 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|2191121|gb|AAB61011.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 132

 Score =  254 bits (648), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/132 (60%), Positives = 101/132 (76%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +++IY+A+ RMAQD+S R  L+ GQGNFGS+DGD  AA RYTE RL K    LL D+ KD
Sbjct: 1   DSSIYEAMVRMAQDFSYRYPLVNGQGNFGSMDGDGAAAMRYTEARLTKITLELLRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+DF  NYDG+ +EP VL AR+PN+LVNG  GIAVGMATNIP HNL EV+DG +++  NP
Sbjct: 61  TIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLSLSKNP 120

Query: 210 DIDLDALMEIIR 221
           DI ++ LME I+
Sbjct: 121 DITINELMEDIQ 132


>gi|269148348|gb|ACZ28545.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148352|gb|ACZ28547.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 115

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDG 115


>gi|297242309|gb|ADI24827.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242319|gb|ADI24832.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242327|gb|ADI24836.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242331|gb|ADI24838.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242337|gb|ADI24841.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242339|gb|ADI24842.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242341|gb|ADI24843.1| DNA gyrase subunit A [Haemophilus influenzae]
 gi|297242343|gb|ADI24844.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  253 bits (647), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 76/122 (62%), Positives = 92/122 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ +GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|269148354|gb|ACZ28548.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  253 bits (647), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148258|gb|ACZ28500.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148262|gb|ACZ28502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148264|gb|ACZ28503.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148266|gb|ACZ28504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148268|gb|ACZ28505.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148272|gb|ACZ28507.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148276|gb|ACZ28509.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148280|gb|ACZ28511.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148282|gb|ACZ28512.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148284|gb|ACZ28513.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148288|gb|ACZ28515.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|269148294|gb|ACZ28518.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148306|gb|ACZ28524.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148310|gb|ACZ28526.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148314|gb|ACZ28528.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148318|gb|ACZ28530.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148322|gb|ACZ28532.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148324|gb|ACZ28533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148326|gb|ACZ28534.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148334|gb|ACZ28538.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148370|gb|ACZ28556.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148374|gb|ACZ28558.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148376|gb|ACZ28559.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148390|gb|ACZ28566.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148392|gb|ACZ28567.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148394|gb|ACZ28568.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148398|gb|ACZ28570.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148400|gb|ACZ28571.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148404|gb|ACZ28573.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148408|gb|ACZ28575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148418|gb|ACZ28580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148420|gb|ACZ28581.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148424|gb|ACZ28583.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148426|gb|ACZ28584.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148428|gb|ACZ28585.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148430|gb|ACZ28586.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148440|gb|ACZ28591.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148450|gb|ACZ28596.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148452|gb|ACZ28597.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148454|gb|ACZ28598.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|294765303|gb|ADF35686.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  253 bits (646), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 92/115 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148286|gb|ACZ28514.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148330|gb|ACZ28536.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|269148338|gb|ACZ28540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148340|gb|ACZ28541.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148412|gb|ACZ28577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|294765300|gb|ADF35685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  253 bits (646), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|269148406|gb|ACZ28574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148414|gb|ACZ28578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148442|gb|ACZ28592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
 gi|294765306|gb|ADF35687.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|319827182|gb|ADV74809.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  252 bits (644), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 94/117 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|269148260|gb|ACZ28501.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148274|gb|ACZ28508.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148278|gb|ACZ28510.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148298|gb|ACZ28520.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148304|gb|ACZ28523.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148312|gb|ACZ28527.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148316|gb|ACZ28529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148320|gb|ACZ28531.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148328|gb|ACZ28535.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148332|gb|ACZ28537.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148336|gb|ACZ28539.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148342|gb|ACZ28542.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|269148350|gb|ACZ28546.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Bonn]
 gi|269148356|gb|ACZ28549.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148360|gb|ACZ28551.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148362|gb|ACZ28552.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
 gi|269148368|gb|ACZ28555.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148388|gb|ACZ28565.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148402|gb|ACZ28572.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148410|gb|ACZ28576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|269148434|gb|ACZ28588.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148436|gb|ACZ28589.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148438|gb|ACZ28590.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|269148448|gb|ACZ28595.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
 gi|294765291|gb|ADF35683.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 115

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|47059210|gb|AAT09328.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  252 bits (643), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/115 (64%), Positives = 90/115 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|225550344|ref|ZP_03771293.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379498|gb|EEH01860.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 143

 Score =  252 bits (642), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/137 (49%), Positives = 94/137 (68%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECRLQKAAHFLLDDLGK 148
           E RL K A  +L +L K
Sbjct: 124 ETRLSKIASVMLTNLKK 140


>gi|269148308|gb|ACZ28525.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi C]
          Length = 115

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVGNYDG 115


>gi|154362219|gb|ABS80937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  252 bits (642), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 91/116 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|269148378|gb|ACZ28560.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  251 bits (641), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD   A RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSATAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|28629428|gb|AAO32077.1| DNA gyrase [Acinetobacter calcoaceticus]
          Length = 115

 Score =  251 bits (641), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 91/115 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P V+  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMA 115


>gi|297242349|gb|ADI24847.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  251 bits (640), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDALKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|2191123|gb|AAB61012.1| DNA gyrase A [Staphylococcus haemolyticus]
          Length = 132

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/132 (56%), Positives = 98/132 (74%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +++IYDA+ RM Q +S R  L++GQGNFGS+DGD  AA RYTE ++ K    LL D+ KD
Sbjct: 1   DSSIYDAMVRMEQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLRDINKD 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
           T+DF  NYDG+ +EP VL +R+PN+LVNG  GIAVGMATNIP HNL EV++G + +  NP
Sbjct: 61  TIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLHLSKNP 120

Query: 210 DIDLDALMEIIR 221
           D+ +  LME I+
Sbjct: 121 DVTIAELMEDIQ 132


>gi|269148302|gb|ACZ28522.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Paratyphi B]
          Length = 115

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHR +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRSVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|154362217|gb|ABS80936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 116

 Score =  250 bits (639), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/116 (62%), Positives = 92/116 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGT 116


>gi|269148296|gb|ACZ28519.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 115

 Score =  250 bits (638), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/115 (62%), Positives = 91/115 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFG++DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGTIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242335|gb|ADI24840.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIKKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|319827180|gb|ADV74808.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827184|gb|ADV74810.1| DNA gyrase subunit A [Streptococcus agalactiae]
 gi|319827186|gb|ADV74811.1| DNA gyrase subunit A [Streptococcus agalactiae]
          Length = 117

 Score =  250 bits (638), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/117 (59%), Positives = 93/117 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           D  AA+RYTE R+ K A  +L D+ K+TVDF+ NYDGS +EP+VL AR+PN+LVNG 
Sbjct: 61  DGAAAQRYTEARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGA 117


>gi|297242345|gb|ADI24845.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIEKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|289677158|ref|ZP_06498048.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 356

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 166/368 (45%), Gaps = 92/368 (25%)

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
             ++DED++  L + ++HT++L FSS G VY  K + +P  S  ARG+ L+N+L L+ GE
Sbjct: 2   TGIKDEDYIAHLLVANSHTTLLMFSSKGKVYWLKTYEIPEASRAARGRPLVNLLPLSDGE 61

Query: 629 RITTIMPFPEDESSW------------------------------------NNLYVVFAT 652
            ITT++P   +                                           ++  +T
Sbjct: 62  YITTMLPVDLEAMRKRADEEGEALEGELDDAENSSETEEERKARIKAADKKKAPFIFMST 121

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
            +G V++  L  F +   SG IA++LD  D ++S      E +I+L +  G+  RF  S 
Sbjct: 122 ANGTVKKTPLVAFSRQRSSGLIALELDEGDILISAAITDGEQEIMLFSDGGKVTRFKESD 181

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRG+ L +G ++ISM I                                
Sbjct: 182 VRAM-GRTARGVRGMRLPEGQKLISMLI-------------------------------- 208

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                  +   ILT SE+G+GKRT+  +F    R G+G+ A   
Sbjct: 209 ---------------------PEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVS 247

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           ++ N  G LV    V D ++I+L+SD+GTL+R  V E+    R T+GV +   A DE++V
Sbjct: 248 NERN--GRLVGAVQVLDGEEIMLISDQGTLVRTRVGEVSSLGRNTQGVTLIKLASDEKLV 305

Query: 893 SVERIRES 900
            +ER++E 
Sbjct: 306 GLERVQEP 313



 Score = 66.7 bits (161), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 97/270 (35%), Gaps = 15/270 (5%)

Query: 518 TRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFV 577
           +   E            +   +   +  G VK+ PL  +  QR  G     + + + D +
Sbjct: 96  SETEEERKARIKAADKKKAPFIFMSTANGTVKKTPLVAFSRQRSSG--LIALELDEGDIL 153

Query: 578 TDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFP 637
               I      ++ FS  G V + K   +      ARG   +  + L +G+++ +++   
Sbjct: 154 ISAAITDGEQEIMLFSDGGKVTRFKESDVRAMGRTARG---VRGMRLPEGQKLISML--- 207

Query: 638 EDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQEN 694
                     ++ A++ G  +R  +S+F +  R G+  + + S +     +         
Sbjct: 208 ---IPEEGSQILTASERGYGKRTAISEFPEYKRGGQGVIAMVSNERNGRLVGAVQVLDGE 264

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
           +I+L +  G  VR  +  +    GRN+ GV  I LA  ++++ +  V        E +  
Sbjct: 265 EIMLISDQGTLVRTRVGEVSSL-GRNTQGVTLIKLASDEKLVGLERVQEPSEVEGEELEG 323

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
                        D        + +S E  
Sbjct: 324 ELVDGVIVDAAEVDDAGEDLQADAASDEDE 353


>gi|30841942|gb|AAP34703.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|30841950|gb|AAP34704.1| DNA gyrase A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 115

 Score =  250 bits (637), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF   YDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDTYDG 115


>gi|82502210|gb|ABB80133.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 115

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 90/115 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA  YTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMCYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVGMA
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMA 115


>gi|297242313|gb|ADI24829.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  249 bits (636), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242347|gb|ADI24846.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  249 bits (635), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/120 (61%), Positives = 90/120 (75%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 3   KKYVKSARVVGDAISKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|62125791|gb|AAX63809.1| topoisomerase II subunit A [Haemophilus quentini]
          Length = 121

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/121 (61%), Positives = 89/121 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
            PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIA
Sbjct: 61  APAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIA 120

Query: 184 V 184
           V
Sbjct: 121 V 121


>gi|296085402|emb|CBI29134.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score =  248 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/109 (66%), Positives = 91/109 (83%)

Query: 30  LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHG 89
           + YA++V+LGRA+PD+RDGLKPVHRRILF M ++G+   K Y KCAR+ GEV+GK+HPHG
Sbjct: 1   MAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFHPHG 60

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           + A+YD+L RMAQD+SLR  LI+G GNFGSVD DPPAA RYTECRL+  
Sbjct: 61  DTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEVI 109


>gi|46191316|ref|ZP_00206762.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Bifidobacterium longum DJO10A]
          Length = 720

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 172/750 (22%), Positives = 297/750 (39%), Gaps = 95/750 (12%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATN+ THNLGEVV+    ++ + D  L+ LM  + GPD+PTG  I+GR GI+ AYATGR
Sbjct: 1   MATNLATHNLGEVVNAAKFLMAHSDATLEQLMRYVPGPDWPTGGTIIGRDGIREAYATGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD- 304
           G++  R  +HIE  +  ++ IVVTE+PY V    ++E+I++ V+ +++  I+   D +D 
Sbjct: 61  GTLTTRAATHIEHVTARKQAIVVTELPYMVGPEKVIERISDGVKNRKLEGISGAFDLTDR 120

Query: 305 RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
             G R+VIE+K G     +L QL+++T LQ  F++N VAL   +P    L  +L+ +V  
Sbjct: 121 HNGTRIVIEIKTGFDPHAVLVQLFKHTPLQDNFAMNNVALVEGRPHTMGLKEMLQVWVDH 180

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R  V+ RR++Y   KA +R H++ GL +A+ ++DEV+++IR S + + A+  LM      
Sbjct: 181 RRVVIRRRSEYRKKKALERLHLVEGLLLAMLDIDEVIQVIRTSDDADAAKSRLM------ 234

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                   L EVQ + IL+LRL RLT + R ++  E + L   I
Sbjct: 235 --------------------VVFDLDEVQAQYILDLRLRRLTKMNRIELEAERDDLKKRI 274

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
           +E   IL+S   L  ++  E+     +  +PRRT +++   D      + +      VS 
Sbjct: 275 EELTRILASAEALDQVVTDEMDEAVAKWGSPRRTVLLDADPDGTLTPVVAQGAGASGVSK 334

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD--LFIVSTHTSVLFFSSLGFVYKEK 602
                    +   +        +    +  +  T      +     V+  S+ G + +  
Sbjct: 335 SALEAVKAATTISSAEADVAAAAAAAKKTGEQSTLTGALKIEDEPCVVMMSATGLIARTT 394

Query: 603 VWRLP------IGSPQARGKALINILSLNQGERI-----TTIMPFPEDESSWNNLYVVFA 651
              +           + R   +  I   +             +                 
Sbjct: 395 PSAMDVFNARSTSDERLRDDQITTIFETSTRATYGLVTSAGRLVLAHVVDLPALPATATL 454

Query: 652 TKHGNVRRN-------KLSDFIQINRSGKIAM--------KLDSRDEILSVETCTQENDI 696
           +  G V+ +                    IAM              E            +
Sbjct: 455 SLKGGVQADELIGMTESTDPIRGERVITAIAMEQPTSGKTSAKDESEDGGAAEAKPLPSL 514

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD------ADYDE 750
            + T+ G   R+   A              I L  GD+V+  A+    D      +D   
Sbjct: 515 AIGTRNGVIKRWNREAPTTMDSWP-----VIDLKDGDEVVFAAVAEDDDRLVFISSDSSL 569

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF---------IL 801
                K++  Q R   G      +     +    +   +      + +          +L
Sbjct: 570 LTFEAKNVRPQGRTAGGMAGIKLAEGARVAAFNVVPAGKVAWTYEEGENGLTSGSGAVVL 629

Query: 802 TV---------SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL--VAVFPVNDN 850
           TV         +E G  K T    +    R+  G+R+    K      L  V ++P++ +
Sbjct: 630 TVAGDSDALPGTENGAAKVTPLEMYPTKGRATGGVRSQRFLKGQNTLILAWVGLYPLHAS 689

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGV 880
                 +  G+ + +P  ++R   R   GV
Sbjct: 690 ------TSAGSPVELPKPDMR---RDGSGV 710


>gi|297242321|gb|ADI24833.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 122

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/120 (62%), Positives = 91/120 (75%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+ +GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 2   KKYVKSARVVGDAIGKYHPHGDSAVYDKIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 61

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 62  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 121


>gi|309049|gb|AAC36878.1| DNA gyrase A subunit [Mycobacterium tuberculosis H37Rv]
 gi|740009|prf||2004291A DNA gyrase:SUBUNIT=A
          Length = 107

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 83/107 (77%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE RL   A  +
Sbjct: 1   GKYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAMEM 60

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
           L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATN
Sbjct: 61  LREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATN 107


>gi|28193541|emb|CAD56003.1| DNA gyrase [Proteus mirabilis]
          Length = 115

 Score =  248 bits (633), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/115 (60%), Positives = 89/115 (77%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L+
Sbjct: 1   VHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           +GQGNFGSVDGD  AA RYTE R+ K AH LL DL K+TVDF PNYDG+   P V
Sbjct: 61  DGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAV 115


>gi|110451856|gb|ABG74482.1| mutant ParC [Neisseria gonorrhoeae]
          Length = 125

 Score =  248 bits (632), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/125 (54%), Positives = 90/125 (72%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           +YL Y ++V+ GRA+P++ DG KPV RRILF M  MG+    K VK AR+ GE++GKYHP
Sbjct: 1   AYLEYPMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
           HG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL ++ 
Sbjct: 61  HGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSEIN 120

Query: 148 KDTVD 152
           + TV+
Sbjct: 121 QGTVE 125


>gi|297242383|gb|ADI24864.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/122 (59%), Positives = 91/122 (74%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKK+VK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKFVKSARVVGDAIVKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+T++F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|297242315|gb|ADI24830.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/120 (61%), Positives = 90/120 (75%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           KKYVK AR+ G+ + KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PAA 
Sbjct: 3   KKYVKSARVVGDAIDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAM 62

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGMAT
Sbjct: 63  RYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMAT 122


>gi|269148358|gb|ACZ28550.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Infantis]
          Length = 115

 Score =  247 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDG KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +
Sbjct: 1   VRDGPKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 115


>gi|297242323|gb|ADI24834.1| DNA gyrase subunit A [Haemophilus influenzae]
          Length = 123

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/122 (61%), Positives = 90/122 (73%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            NKKYVK AR+ G+   KYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD PA
Sbjct: 1   ANKKYVKSARVVGDAPDKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  GIAVGM
Sbjct: 61  AMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGM 120

Query: 187 AT 188
           AT
Sbjct: 121 AT 122


>gi|255570740|ref|XP_002526324.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
 gi|223534351|gb|EEF36060.1| DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative
           [Ricinus communis]
          Length = 433

 Score =  247 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 128/447 (28%), Positives = 208/447 (46%), Gaps = 49/447 (10%)

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
             L R    NE   L  +I    ++LSSR  +L +I+QE + +K++  +PRR+ + +   
Sbjct: 1   MLLQRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASPRRSSLEDSDG 60

Query: 526 DM-EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVS 584
              +D D +  E+M++  S  GYVKR+    +  Q RG  G+S   +R  D ++D  +  
Sbjct: 61  SQLDDIDVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDSIVCR 120

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWN 644
            H  VL+FS LG VY  + +++P  S  A G  L+ ILSL+ GERIT+I+P  E      
Sbjct: 121 AHDHVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFS---G 177

Query: 645 NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQ 704
           + +++  T +G +++  L+ F  I  +G IA++L   DE+  V  CT  + + + +  G 
Sbjct: 178 DQFLLMLTVNGYIKKVPLNLFSAIRSTGIIAIQLVPGDELKWVRCCTNNDLVAMASLNGM 237

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +      IR  + RN+ G   + L  GD++ SM I+  A     ER             
Sbjct: 238 VILSSCENIRALS-RNTRGGVAMRLKGGDKMASMDIIPVAMRKDLER------------- 283

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                               + E+     K    ++L VSE G+GKR     FR+S  + 
Sbjct: 284 --------------------VLEDPRSNSKGSGPWLLFVSENGYGKRVPLSSFRLSPLNR 323

Query: 825 KGIRATDVSKINEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRA 876
            G+     S       L AVF V          ++Q++LVS  GT+ R+ V +I I SR 
Sbjct: 324 VGLIGYKFSA---EDQLAAVFVVGFTLAEDGESDEQVVLVSQSGTVNRIKVQDISIQSRF 380

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIV 903
            +GV++    +  ++ S   I   E  
Sbjct: 381 ARGVILMRLEQAGKIQSASLISTMEAE 407



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/427 (12%), Positives = 130/427 (30%), Gaps = 37/427 (8%)

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
                  +   ++  ++     L     I++         +        +S        +
Sbjct: 4   QRKKFVNESKLLMEQISRLEELLSSRHNILQLIEQEAVELKNKFASPRRSSLEDSDGSQL 63

Query: 435 DDSSYTIGSDGTMYLSEV-QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           DD       +  +  SE    + +                  +L          +     
Sbjct: 64  DDIDVVPNEEMLLAFSEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVNDAMSDSIVCRAHD 123

Query: 494 RSRLLGIIKQELLSVKDELDTPRRT------------RIVEGLLDMEDEDCIVREDMVVT 541
                  +     +   ++    RT               E +  +        +  ++ 
Sbjct: 124 HVLYFSDLGIVYSARAYKIPECSRTAAGTPLVQILSLSDGERITSIIPVSEFSGDQFLLM 183

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           ++  GY+K+VPL+++ A R  G     + +   D +  +   + +  V   S  G V   
Sbjct: 184 LTVNGYIKKVPLNLFSAIRSTG--IIAIQLVPGDELKWVRCCTNNDLVAMASLNGMVILS 241

Query: 602 KVWRLPIGSPQARG-----------KALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
               +   S   RG            A ++I+ +   + +  ++  P   S  +  +++F
Sbjct: 242 SCENIRALSRNTRGGVAMRLKGGDKMASMDIIPVAMRKDLERVLEDPRSNSKGSGPWLLF 301

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETC--------TQENDILLTT 700
            +++G  +R  LS F     +    +     + D++ +V             +  ++L +
Sbjct: 302 VSENGYGKRVPLSSFRLSPLNRVGLIGYKFSAEDQLAAVFVVGFTLAEDGESDEQVVLVS 361

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSA 760
           + G   R  +  I     R + GV  + L +  ++ S +++   +A+  E       M A
Sbjct: 362 QSGTVNRIKVQDI-SIQSRFARGVILMRLEQAGKIQSASLISTMEAEPKESTPNASEMLA 420

Query: 761 QRRLISG 767
                  
Sbjct: 421 TEVEAPA 427


>gi|221504453|gb|EEE30126.1| hypothetical protein TGVEG_051980 [Toxoplasma gondii VEG]
          Length = 1211

 Score =  247 bits (629), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 140/481 (29%), Positives = 232/481 (48%), Gaps = 57/481 (11%)

Query: 128 ERYTECRLQKAAHF-LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            RYTECRL +     LL +L    V FRPN+D + +EPVV  A  P VL+ G  GIAVGM
Sbjct: 1   MRYTECRLTRFCEDALLKNLDDKVVPFRPNFDANEREPVVFPASVPLVLIQGSSGIAVGM 60

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
           +T IP HNL E++D  +A+I +P++    L+ ++ GPDFPTG +++    I  AY  GRG
Sbjct: 61  STQIPPHNLHEILDATIALIRDPELPDAELLRLVPGPDFPTGGLLVNSEEIPGAYKEGRG 120

Query: 247 SIVIRGVSHIE------------------------------KTSGDREQIVVTEIPYQVN 276
            +++RG  H+E                                  +  ++V+TE+PY VN
Sbjct: 121 RVLLRGRFHLEGEDDDGDTVPGRDRNAEDEAERDEADRNVRNGRKNERRLVITELPYGVN 180

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSL 336
           K+ +++ IA+++  K +  +  +RDESD +G RVV+ L+R A A  IL  L ++T+LQ  
Sbjct: 181 KSTVMQVIAQMISVKFLEGVTSVRDESDWRGIRVVLVLRRDADAHTILTLLLKHTNLQVY 240

Query: 337 FSVNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
             ++++AL    KP RF+L  +L +++AFR   + R       + + R+H+L GL  AV+
Sbjct: 241 IPMHLIALEKGTKPVRFSLKSMLLSWIAFRFHTLRRLLAAEEAERKARSHLLEGLLRAVS 300

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            +D+VV+ +R S + + A+++L +                           +  S  Q +
Sbjct: 301 LMDDVVKTVRESLSADEAKQKLTE-------------------------PPLGFSPAQAQ 335

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           A+L L L+RLT L R  +  E  +    + E   +L+    +  ++ +EL + K     P
Sbjct: 336 ALLRLTLSRLTRLERRQLEEEAKAQKNRLSELASLLAHDREIYELMVEELQAHKTRHKAP 395

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R+T+++      +              +             R      K  + V  + E 
Sbjct: 396 RKTKVLGLRRAQQRARREEDARATTARNSQEAFAETDRHDSRRPDGREKEENPVKEKKET 455

Query: 576 F 576
            
Sbjct: 456 E 456



 Score = 98.7 bits (244), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 86/275 (31%), Gaps = 95/275 (34%)

Query: 696  ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
            I++ T+ G  +RFP S++R      + GVR I L  GD V S+A+V     + + +    
Sbjct: 942  IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTESR 1001

Query: 756  KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
            K   +       ++                        +  E  +L V+  GFGKR    
Sbjct: 1002 KEGDSDETQSKNESSN----------------------EKAEPSLLIVTAAGFGKRIRVS 1039

Query: 816  DFRISNRSGKGIRATDVSKINEIGA----------------------------------- 840
              R+  R G G+R   + K  ++                                     
Sbjct: 1040 ALRMQRRRGVGVRVIRLVKRKKVAREGDDRGLSDEAVGQESQGFPDEEPDSEERADPRSV 1099

Query: 841  ----------------LVAVFPVNDND--------------QIILVSDKGTLIRVPVNEI 870
                            +VAV  +  +D              +++ V+  G L+R     I
Sbjct: 1100 SQEKDPQSPETEGDNYVVAVLALPASDLPNRPKKSKGSDNAELLSVTQNGFLLRQSCRSI 1159

Query: 871  R-IASRATKGVVIFST-------AKDERVVSVERI 897
                 R  +GV +          +  + +V+ + +
Sbjct: 1160 PMPRGRLARGVSLQRLPATGKSRSSTDLIVAADIV 1194



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 853 IILVSDKGTLIRVPVNEIRIASRA-TKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           I++V+ +G  +R P + +R +  + T+GV        + V SV  +      DEA++ 
Sbjct: 942 IVIVTRQGMGLRFPASSLRASGSSKTRGVRAIRLRAGDSVASVAVVPPEVKEDEAKTE 999


>gi|18175500|gb|AAL60063.1| topoisomerase IV subunit A [Yersinia enterocolitica]
          Length = 128

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 67/129 (51%), Positives = 93/129 (72%), Gaps = 3/129 (2%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           QGN+G+ D DP   AA RYTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR 
Sbjct: 61  QGNWGAPD-DPKSFAAMRYTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARL 119

Query: 172 PNVLVNGGG 180
           PN+L+NG  
Sbjct: 120 PNILLNGTT 128


>gi|75758773|ref|ZP_00738888.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228904159|ref|ZP_04068254.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
 gi|228930729|ref|ZP_04093707.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|74493783|gb|EAO56884.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|228828976|gb|EEM74635.1| DNA gyrase subunit A [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228855244|gb|EEM99808.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222]
          Length = 745

 Score =  246 bits (627), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 142/707 (20%), Positives = 263/707 (37%), Gaps = 76/707 (10%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
             +   Y+ YA  V+  RA+ D+RDGLKPV R  L+ M +      K  +K  ++   V+
Sbjct: 46  QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEKA---KDMIKSEQVGAGVL 102

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRL-LLIEGQGNFGS-VDGDPPAAERYTECRLQKAAH 140
            KYHPH   + Y++L +M +        L+ G+G  G       PAA RYT  +  + A 
Sbjct: 103 -KYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            +   +    +D   N+D + + P VL A  P +L+    GIAVG +T  P+    +V +
Sbjct: 162 EMFTAMD--GIDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT-GIKNAYATGRGSIVIRGVSHIEKT 259
                I +       +      PDF TG  I      ++    TG+GS + RG   I   
Sbjct: 220 LVREYIRDGKCSTMIV------PDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFI--- 270

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             D + IVVTE+P  V    ++++I +   +          D + + G    I  +    
Sbjct: 271 --DGKNIVVTEVPQGVTVEKIMKEIEKAEIQGITP--NGYSDLTGKDGCYFEITCRAKNR 326

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
              +L +LY  TSLQ  F+ N++A+   K     + GI+  +V +R +V+ R+T+  L K
Sbjct: 327 VQEVLMELYTKTSLQKKFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLDLAK 386

Query: 380 ARDRAHVLVGLA--IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
             + A    G    +A+    + +  +    +   A + + +      D+ + I     +
Sbjct: 387 LVESAKYTKGFIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWIIKRRLN 446

Query: 438 SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
            +                               +   N+  +  IEI +    L +   L
Sbjct: 447 QFRND----------------------------NKYINQYANYQIEIAKLEKYLENIDTL 478

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           +         +  +    RRT I       E E     E           ++      Y 
Sbjct: 479 ILEDMDRFDLLVSK-KHERRTEIT--NKVYEVETVKEDE-----------IEIPVSECYY 524

Query: 558 AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKA 617
             + G      + ++       +F   T+++++  SS G +++     +   +    G  
Sbjct: 525 QIKDG--FLRKLHVKPTSGEGIIFEGYTNSTIIALSSEGEIFRIYGNDINYLTGNDIGTY 582

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +     L   + +  I          +    V   + G V     ++F+      K    
Sbjct: 583 IPTYSGLANAQHVQLIWATV-----CDEKKYVLTYEDGFVGFLDTAEFLVGAIKSKYLRN 637

Query: 678 L--DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                 D++  V    +++ I++ T         + +I+    R + 
Sbjct: 638 GISAHADKLTDVREYQEDSVIVVETHDKLYACAHLDSIK-MKSRTAR 683


>gi|15787866|dbj|BAB68536.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 131

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 63/128 (49%), Positives = 90/128 (70%), Gaps = 3/128 (2%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+
Sbjct: 3   LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGD 62

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K 
Sbjct: 63  VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 121

Query: 139 AHFLLDDL 146
           A  LL +L
Sbjct: 122 AELLLSEL 129


>gi|115456153|ref|NP_001051677.1| Os03g0812000 [Oryza sativa Japonica Group]
 gi|113550148|dbj|BAF13591.1| Os03g0812000 [Oryza sativa Japonica Group]
          Length = 438

 Score =  244 bits (623), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 130/474 (27%), Positives = 226/474 (47%), Gaps = 64/474 (13%)

Query: 457 ILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           +L++ L +LT L R    +E  SL  EI +  ++LS++  +  +I QE   +K++  TPR
Sbjct: 1   LLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPR 60

Query: 517 RTRIVEG-LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDED 575
           R+ I +    +++D D I  E+M++ +S  GYVKR+  + +  Q RG  G+S   MR  D
Sbjct: 61  RSFIEDSASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMND 120

Query: 576 FVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMP 635
             +D  +  TH  VL+FS  G VY  + +++P  +  A G  L+ +LSL+ GERIT+I+P
Sbjct: 121 NTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVP 180

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQEND 695
             E      + Y+V  T +G +++  L+ F  I  SG I+++L   DE+  V  C  ++ 
Sbjct: 181 VNEFG---EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDL 237

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           + L ++ G  +    + +R   GR + GV  + L +GD++ SM I+     +  E    +
Sbjct: 238 VALASQNGMVIVNTCNKLRAL-GRKTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRV 296

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY 815
           + +S                                       ++L +++ G GKR    
Sbjct: 297 RDLSP-------------------------------------PWLLFIADNGIGKRVPLN 319

Query: 816 DFRISNRSGKGIRATDVSKINEIGALVAVFPV--------NDNDQIILVSDKGTLIRVPV 867
            FR  N +  G++   +       +L AVF V          ++Q++LVS  GT+ R+ V
Sbjct: 320 AFRQGNFNRVGLQGYKLPPDC---SLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKV 376

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERI-----------RESEIVDEAESTE 910
            +I I SR+ +GV++       ++ S   I             + ++ EAE  E
Sbjct: 377 KDISIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASLISEAEEPE 430



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/433 (15%), Positives = 139/433 (32%), Gaps = 56/433 (12%)

Query: 378 NKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
           ++A+  +  +  L   ++N   + ++I         +    +RS+           +DD 
Sbjct: 19  DEAKSLSEEISKLNELLSNKKLIFQLILQEATDLKNKFATPRRSFIEDSAST---EVDDL 75

Query: 438 SYTIGSDGTMYLSEV-------------QTRAILELRLARLTGLGR-------DDIRNEL 477
                 +  + LSE              Q R  +   + ++                + L
Sbjct: 76  DIIPNEEMLLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVL 135

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRED 537
                 I                    L+ +    D  R T IV              + 
Sbjct: 136 YFSDKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG-------EDQ 188

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +V ++  GY+K+VPL+ + A R  G     + +   D +  +        V   S  G 
Sbjct: 189 YLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQNGM 246

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY---------- 647
           V      +L     + RG   +  + L +G+++ ++   P    +    Y          
Sbjct: 247 VIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSPPW 303

Query: 648 VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQENDIL 697
           ++F   +G  +R  L+ F     NR G    KL     + +V             +  ++
Sbjct: 304 LLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDEQVV 363

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           L ++ G   R  +  I     R++ GV  + L    ++ S +++  A+ + ++       
Sbjct: 364 LVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPESASL 422

Query: 758 MSAQRRLISGDTE 770
           +S        D E
Sbjct: 423 ISEAEEPEKQDPE 435


>gi|218672863|ref|ZP_03522532.1| DNA gyrase subunit A [Rhizobium etli GR56]
          Length = 125

 Score =  243 bits (621), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 83/104 (79%), Positives = 98/104 (94%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++G++WNKKYVKCAR++G+VM
Sbjct: 2   EEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVM 61

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           GKYHPHGNAAIYDALARMAQ WSLRL LI+GQGNFGSVDGDPPA
Sbjct: 62  GKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPA 105


>gi|2588920|dbj|BAA23211.1| GyrA subunit [Klebsiella pneumoniae]
          Length = 109

 Score =  243 bits (620), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 69/109 (63%), Positives = 88/109 (80%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDF 109


>gi|171850795|emb|CAP11080.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 110

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/110 (60%), Positives = 86/110 (78%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            LL++G GNFGSVDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNF 110


>gi|16041050|dbj|BAB69702.1| topoisomerase IV [Salmonella paratyphi]
          Length = 126

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 62/125 (49%), Positives = 89/125 (71%), Gaps = 3/125 (2%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+
Sbjct: 3   LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 62

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K 
Sbjct: 63  VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 121

Query: 139 AHFLL 143
           A  LL
Sbjct: 122 AELLL 126


>gi|60678990|gb|AAX33776.1| topoisomerase IV subunit A [Mycoplasma synoviae]
          Length = 136

 Score =  243 bits (619), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 66/136 (48%), Positives = 96/136 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L     +G++++KK+ K ARI G+V+GKYHPHG+ ++YDA+  +AQ W + + L+   GN
Sbjct: 1   LLQCGMLGLDFDKKFKKSARIVGDVIGKYHPHGDTSVYDAMINLAQWWKMNIPLLSMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
            GS+D D  AA RYTE +L K A++++ D+ K TV F PN+D S  EP+VL + +PN+LV
Sbjct: 61  IGSIDDDKQAAMRYTEVKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLV 120

Query: 177 NGGGGIAVGMATNIPT 192
           NG  GIA+GMAT +P 
Sbjct: 121 NGSRGIAIGMATEMPP 136


>gi|309753204|gb|ADO85625.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  242 bits (618), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 80/106 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|291533756|emb|CBL06869.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Megamonas hypermegale ART12/1]
          Length = 278

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 87/336 (25%), Positives = 155/336 (46%), Gaps = 60/336 (17%)

Query: 569 VVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGE 628
           +  ++ED+V ++ I STH ++LFF++ G VY+ K + +P     A+G A++N+L L + E
Sbjct: 1   MGTKEEDYVENMIITSTHNTILFFTNKGLVYQLKGYEIPESGRTAKGTAIVNLLPLAKEE 60

Query: 629 RITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK-IAMKLDSRDEILSV 687
            IT I+P  E      + Y+  AT+HG V++  LS+F    +    IA+ L   DE++ V
Sbjct: 61  TITAIIPIKEFS---KDRYLFMATRHGIVKKTGLSEFDTNRKKTGLIALSLKENDELIGV 117

Query: 688 ETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
           +       I++ T+ G  + F    +R   GR + GV GI L   D VI M  +      
Sbjct: 118 KLTDGNRQIIIGTRDGMSICFNEQDVRPM-GRTARGVIGIKLKGEDTVIGMDNIRD---- 172

Query: 748 YDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
                                                            +  +LTV+E G
Sbjct: 173 -------------------------------------------------DCEVLTVTEHG 183

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
           FGKRT++ ++R   R G G+    V++  + G ++ +  V+   + +L+S +G +IR  +
Sbjct: 184 FGKRTATSEYRTQTRGGIGLINIKVTE--KTGFVIGIKVVDSQQEFMLISTEGIVIRSNI 241

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            E+ +  R T+GV + +   +++V ++      E  
Sbjct: 242 EEVSVIGRNTQGVKMMNMDNNDKVAALAAFEIKEDD 277


>gi|330939845|gb|EGH43078.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 578

 Score =  242 bits (617), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 162/569 (28%), Positives = 262/569 (46%), Gaps = 61/569 (10%)

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRT 235
           NG  GIAVGMAT++P HNL EV   CV ++D+P   +  L E I GPD+PT   +I  R 
Sbjct: 1   NGTTGIAVGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRA 60

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            +   Y TGRGS+ +R V  IE        I+VT +P+QV+ A +LE+IA  ++ K++  
Sbjct: 61  DLLKIYETGRGSVRMRAVYRIEDGD-----IIVTSLPHQVSGAKVLEQIAAQMQAKKLPM 115

Query: 296 IADLRDESDRQG-YRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALN-GYKPERF 352
           +ADLRDESD +   R+VI  +      D ++  L+  T L+S + VN+  +    KP+  
Sbjct: 116 VADLRDESDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLK 175

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P  
Sbjct: 176 NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP-- 233

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + EL+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 234 -KAELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMK 266

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R+E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + 
Sbjct: 267 LRSEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSEN 326

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +
Sbjct: 327 ELMPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAV 378

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP    + +G+ L   L    G     ++         ++   V 
Sbjct: 379 FIDSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVI 430

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F
Sbjct: 431 ASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVF 490

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            IS +         G + I +  G++V S
Sbjct: 491 KISDLPQLG--KGKGNKIIGI-PGERVAS 516


>gi|184161295|gb|ACC68679.1| ParC [Escherichia coli]
          Length = 128

 Score =  242 bits (616), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 61/126 (48%), Positives = 88/126 (69%), Gaps = 3/126 (2%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+
Sbjct: 4   LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGD 63

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K 
Sbjct: 64  VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 122

Query: 139 AHFLLD 144
           +  LL 
Sbjct: 123 SELLLS 128


>gi|321268258|gb|ADW78937.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268260|gb|ADW78938.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 115

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 90/115 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 115


>gi|85376451|gb|ABC70468.1| DNA gyrase [Listonella anguillarum]
          Length = 100

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 65/100 (65%), Positives = 85/100 (85%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+GRA+PD+RDGLKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A
Sbjct: 1   AMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSA 60

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           +YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 61  VYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 100


>gi|309753212|gb|ADO85629.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  241 bits (615), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|7021435|gb|AAF35344.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021437|gb|AAF35345.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021439|gb|AAF35346.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7021441|gb|AAF35347.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532941|gb|AAF63293.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532943|gb|AAF63294.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532945|gb|AAF63295.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532947|gb|AAF63296.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
 gi|7532949|gb|AAF63297.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 67/123 (54%), Positives = 88/123 (71%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKN 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 167 LCA 169
           L A
Sbjct: 121 LPA 123


>gi|18448212|gb|AAL69651.1|AF372652_1 topoisomerase IV subunit C [Mycoplasma gallisepticum]
          Length = 137

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 65/136 (47%), Positives = 92/136 (67%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           ++K +    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2   DKKKVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A   GEV+GK+HPHG+++IY+AL RM Q W   + LI+ QGN GS+DGD  AA RYT
Sbjct: 62  RKSAATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNAAAMRYT 121

Query: 132 ECRLQKAAHFLLDDLG 147
           E RL    + +L+++ 
Sbjct: 122 EARLSHYGNLMLENIN 137


>gi|134141855|gb|ABO61322.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141857|gb|ABO61323.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141859|gb|ABO61324.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141861|gb|ABO61325.1| topoisomerase IV subunit [Listonella anguillarum]
 gi|134141863|gb|ABO61326.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  241 bits (614), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 65/129 (50%), Positives = 93/129 (72%), Gaps = 3/129 (2%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           QGN+G+ D DP   AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR 
Sbjct: 61  QGNWGAPD-DPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARL 119

Query: 172 PNVLVNGGG 180
           P++L+NG  
Sbjct: 120 PHILLNGVT 128


>gi|87240782|gb|ABD32640.1| WD40-like [Medicago truncatula]
          Length = 398

 Score =  240 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 119/427 (27%), Positives = 203/427 (47%), Gaps = 48/427 (11%)

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM-EDEDCIVREDMVVTVSHLGYV 548
           + S     + +I+QE + +K++  +PRR+ + +      ED D I  E+M++T+S  GY+
Sbjct: 5   LKSQLDSSIQVIEQEAIDLKNKFASPRRSILEDTDDGQLEDIDVIPNEEMLLTLSEKGYL 64

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+  S +  Q RG  G+S   ++  D ++D  +   H  VL+FS  G VY  + +++P 
Sbjct: 65  KRMKPSTFNLQHRGTIGKSVGKLKMNDSMSDFIVCRAHDFVLYFSDKGTVYSARAYKIPE 124

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
            S  A G  L+ ILSL+ GERIT+I+P  E     ++ +++  T  G ++R  L+ F  I
Sbjct: 125 CSRTASGTPLVQILSLSDGERITSIIPVSEFT---DDQFLLMLTMQGYIKRVPLNSFSSI 181

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
             SG IA++L   DE+  V  CT ++ + + +  G  +      IR   GRN+ G   + 
Sbjct: 182 RSSGIIAIQLVPGDELKWVRCCTNDDFVAMASHNGMVILSLCIQIRTL-GRNTRGALAMR 240

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L +GD++ S+ I+  A  +  E I  +   + +                           
Sbjct: 241 LKEGDRMASVDIIPAAMWNNLETISKLPESNGK--------------------------- 273

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV- 847
                     ++L +SE G GKR     FR+S+ +  G+     S  +    L AVF V 
Sbjct: 274 -----SYDGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDR---LAAVFVVG 325

Query: 848 -------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
                    ++Q++LVS  GT+ R+ V +I I SR  +GV++       ++ +   I  +
Sbjct: 326 FTLAEDGESDEQVVLVSQSGTVNRIKVRDISIQSRFARGVILMRLDHAGKIQTASLISAT 385

Query: 901 EIVDEAE 907
           E   E E
Sbjct: 386 ECEPEEE 392



 Score = 69.4 bits (168), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/298 (16%), Positives = 114/298 (38%), Gaps = 27/298 (9%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDF--IQINRSGKIAMKLDSRDEILSVETCTQE 693
             + +   N   ++  ++ G ++R K S F        GK   KL   D +     C   
Sbjct: 43  LEDIDVIPNEEMLLTLSEKGYLKRMKPSTFNLQHRGTIGKSVGKLKMNDSMSDFIVCRAH 102

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDE 750
           + +L  +  G         I     R + G   V+ +SL+ G+++ S  I+  ++   D+
Sbjct: 103 DFVLYFSDKGTVYSARAYKI-PECSRTASGTPLVQILSLSDGERITS--IIPVSEFTDDQ 159

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGK 810
            +  +      +R+       I S    +       E +       + F+   S  G   
Sbjct: 160 FLLMLTMQGYIKRVPLNSFSSIRSSGIIAIQLVPGDELKWVRCCTNDDFVAMASHNGMVI 219

Query: 811 RTSSYDFRISNRSGKGIRATDVSKINEIGAL-------------VAVFPVNDNDQ----- 852
            +     R   R+ +G  A  + + + + ++             ++  P ++        
Sbjct: 220 LSLCIQIRTLGRNTRGALAMRLKEGDRMASVDIIPAAMWNNLETISKLPESNGKSYDGPW 279

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++ +S+ G   RVP++  R++S    G++ +  + ++R+ +V  +  + + ++ ES E
Sbjct: 280 LLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFVVGFT-LAEDGESDE 336



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 94/243 (38%), Gaps = 25/243 (10%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  ++ ++  GY+KRVPL+ + + R  G     + +   D +  +   +    V   
Sbjct: 155 FTDDQFLLMLTMQGYIKRVPLNSFSSIRSSG--IIAIQLVPGDELKWVRCCTNDDFVAMA 212

Query: 593 SSLGFVYKEKVWRLPIGSPQARG-----------KALINILSLNQGERITTIMPFPE-DE 640
           S  G V      ++       RG            A ++I+       + TI   PE + 
Sbjct: 213 SHNGMVILSLCIQIRTLGRNTRGALAMRLKEGDRMASVDIIPAAMWNNLETISKLPESNG 272

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD--SRDEILSVETC-------- 690
            S++  +++F ++ G+ +R  LS F   + +    +     + D + +V           
Sbjct: 273 KSYDGPWLLFISESGHGKRVPLSRFRMSSLNRVGLIGYKFSAEDRLAAVFVVGFTLAEDG 332

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             +  ++L ++ G   R  +  I     R + GV  + L    ++ + +++   + + +E
Sbjct: 333 ESDEQVVLVSQSGTVNRIKVRDI-SIQSRFARGVILMRLDHAGKIQTASLISATECEPEE 391

Query: 751 RIC 753
            + 
Sbjct: 392 ELA 394


>gi|309753208|gb|ADO85627.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|289677157|ref|ZP_06498047.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 358

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 162/356 (45%), Positives = 228/356 (64%), Gaps = 10/356 (2%)

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG--DREQ 265
           NP++ +D LM+ I GPDFPT A+I GR GI  AY TGRG I +R  S +E       R+Q
Sbjct: 1   NPELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIVEDIDKVGGRQQ 60

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+TE+PYQ+NKA ++EKIAELV+EK++  I +LRDESD+ G RVVIEL+RG   +VILN
Sbjct: 61  IVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELRRGEVPEVILN 120

Query: 326 QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            LY  T LQS+F +N+VAL   +P    L  +L+AFV  R EVV RRT + L KAR+R H
Sbjct: 121 NLYAQTQLQSVFGINIVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGH 180

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--- 442
           +L G A+A++N+D V+ +I+ SP P  A+  L++  W +S + ++++     S       
Sbjct: 181 ILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERAGADSCRPENLD 240

Query: 443 -----SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                 +G  +LS  Q +AILELRL RLTGL  + +  E   +  +I E + IL+S +RL
Sbjct: 241 PQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGELIRILNSATRL 300

Query: 498 LGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           + +I++EL  ++ E    RRT I++  LD+   D I  E+ VVT+SH GY K  PL
Sbjct: 301 MEVIREELELIRSEYGDARRTEILDARLDLTLGDLITEEERVVTISHGGYAKTQPL 356


>gi|28916594|gb|AAO59530.1| gyrase A [Bacillus subtilis subsp. spizizenii]
          Length = 217

 Score =  240 bits (613), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 118/217 (54%), Positives = 160/217 (73%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE  + K +  +L D+ KDT+D++  Y+G  ++PVV+ +R+PN+LV G  G A GMA
Sbjct: 1   MRYTEAGMSKISMEILRDITKDTLDYQDTYEGPERDPVVMPSRFPNLLVTGAAGFAEGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
            NIP H LG+++DG +A  +NP   +  LME I GPDFPT   I G +GI+ AY TGRGS
Sbjct: 61  PNIPPHQLGKIIDGVLAESENPGHTIRELMEFIPGPDFPTAGQIFGPSGIRKAYETGRGS 120

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           I IR  + I++TS  +E+IVVTEIPYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G
Sbjct: 121 ITIRAKAEIDQTSSGKERIVVTEIPYQVNKANLIEKIADLVRDKKIEGITDLRDESDRTG 180

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
            R+VIE++R A+A+VILN LY+ T+LQ+ F +N +AL
Sbjct: 181 MRIVIEIRRDANANVILNNLYKQTALQASFGINRLAL 217


>gi|309753206|gb|ADO85626.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 80/106 (75%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IY+ L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|121822793|gb|ABM65608.1| DNA topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 119

 Score =  240 bits (612), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 70/120 (58%), Positives = 90/120 (75%), Gaps = 3/120 (2%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 59

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 60  SRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|172073098|gb|ACB71406.1| ParC [Escherichia coli]
          Length = 126

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 61/125 (48%), Positives = 88/125 (70%), Gaps = 3/125 (2%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           + +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+
Sbjct: 3   LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 62

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           V+GKYHPHG++A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K 
Sbjct: 63  VLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 121

Query: 139 AHFLL 143
           +  LL
Sbjct: 122 SELLL 126


>gi|7532891|gb|AAF63268.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532893|gb|AAF63269.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532895|gb|AAF63270.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532897|gb|AAF63271.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532931|gb|AAF63288.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532933|gb|AAF63289.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532935|gb|AAF63290.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532937|gb|AAF63291.1| DNA gyrase subunit A [Streptococcus pyogenes]
 gi|7532939|gb|AAF63292.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 66/106 (62%), Positives = 87/106 (82%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           AQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A  LL D+
Sbjct: 61  AQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|172073096|gb|ACB71405.1| ParC [Escherichia coli]
          Length = 130

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 62  TVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 120

Query: 135 LQKAAHFLLD 144
           L K +  LL 
Sbjct: 121 LSKYSELLLS 130


>gi|309753210|gb|ADO85628.1| gyrase A [Mycobacterium tuberculosis]
          Length = 106

 Score =  239 bits (609), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/106 (59%), Positives = 79/106 (74%)

Query: 28  SYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
           SY+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHP
Sbjct: 1   SYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHP 60

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           HG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 61  HGDASIYYTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 106


>gi|218658888|ref|ZP_03514818.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 367

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 252/367 (68%), Positives = 303/367 (82%), Gaps = 1/367 (0%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           +Q+ F  NMVALNG KPE+ TL+ +L+AFV FREEVV RRTK+LL KAR+RAHVLVGLAI
Sbjct: 1   MQTSFGCNMVALNGGKPEQLTLLDMLRAFVTFREEVVSRRTKFLLRKARERAHVLVGLAI 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           AVAN+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE 
Sbjct: 61  AVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEE 120

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q RAILELRLARLT LGRD+I +ELN +G EI++ LDILSSR R+  I+K EL +V+DE 
Sbjct: 121 QARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEF 180

Query: 513 DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMR 572
            TPRRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  R
Sbjct: 181 GTPRRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTR 240

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
           DEDFV+ LF+V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITT
Sbjct: 241 DEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLAPGERITT 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL-DSRDEILSVETCT 691
           I+P PEDE+SW+NL V+F+T  G VRRNKLSDF+ +NR+GKIAMKL +  DEILSVETCT
Sbjct: 301 ILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGKIAMKLEEEGDEILSVETCT 360

Query: 692 QENDILL 698
           + +D+LL
Sbjct: 361 EHDDVLL 367



 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 9/173 (5%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     +    +       +       + +     E   +
Sbjct: 142 GDEL---NKIGEEIRDYLDILSSRVRIQTIVKDELTAVRDEFGTPRRTEIVDGGLEMDDE 198

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++TVS  G+ KR     +R   R GKG         + +  L   F VN + 
Sbjct: 199 DLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRL---FVVNTHT 255

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
            ++  S +G + +  V  + I +  ++G  + +    A  ER+ ++  + E E
Sbjct: 256 PVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLAPGERITTILPLPEDE 308



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 67/200 (33%), Gaps = 15/200 (7%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
             +F    R+  +   L+  DE L       E+ ++  + LG   R P++  R    R  
Sbjct: 177 RDEFGTPRRTEIVDGGLEMDDEDLIAR----EDMVVTVSHLGYIKRVPLTTYRA-QRRGG 231

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS------L 775
            G  G++    D V  + +V             + +     RL  G              
Sbjct: 232 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLP 291

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKI 835
                    I      E       ++  + +G  +R    DF   NR+GK   A  + + 
Sbjct: 292 LAPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVHVNRNGK--IAMKLEE- 348

Query: 836 NEIGALVAVFPVNDNDQIIL 855
            E   +++V    ++D ++L
Sbjct: 349 -EGDEILSVETCTEHDDVLL 367


>gi|217069485|gb|ACJ83231.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 202

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 112/203 (55%), Positives = 152/203 (74%), Gaps = 1/203 (0%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 61  PPHSLNELIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKV 120

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RV
Sbjct: 121 RAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRV 179

Query: 311 VIELKRGASADVILNQLYRYTSL 333
           VIELKR A ++++LN L++ T++
Sbjct: 180 VIELKRDAMSEIVLNNLFKSTTM 202


>gi|134141865|gb|ABO61327.1| topoisomerase IV subunit [Listonella anguillarum]
          Length = 128

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 65/129 (50%), Positives = 92/129 (71%), Gaps = 3/129 (2%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRI++ M ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++G
Sbjct: 1   RRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDG 60

Query: 114 QGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           QGN+G+ D DP   AA RYTE +L K A  LL +LG+  VD++PN+DG+ QEP +L AR 
Sbjct: 61  QGNWGAPD-DPKSFAAMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARL 119

Query: 172 PNVLVNGGG 180
           P++L+NG  
Sbjct: 120 PHILLNGVT 128


>gi|11095196|gb|AAG29770.1| DNA gyrase subunit A [Streptococcus pyogenes]
          Length = 106

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/106 (63%), Positives = 86/106 (81%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RM
Sbjct: 1   ALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRM 60

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           AQ WS R LL++G GNFGS+DGD  AA+RYTE R+ K A  LL D+
Sbjct: 61  AQWWSYRHLLVDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDI 106


>gi|269838905|ref|YP_001950213.2| type IIA topoisomerase [Ralstonia phage RSL1]
 gi|239793701|dbj|BAG41783.2| type IIA topoisomerase [Ralstonia phage RSL1]
          Length = 514

 Score =  238 bits (607), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 117/506 (23%), Positives = 202/506 (39%), Gaps = 44/506 (8%)

Query: 1   MTEHIISSD----EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI 56
           MT+             ++ +   S+ D  + +   Y   V L R++PDL DGLKPV RRI
Sbjct: 2   MTKKAKKPVGSLVPAADRHVVDESLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRI 61

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+   Q+      ++ K AR++G  MG YHPHGN+AIY A   M Q  S     + G+GN
Sbjct: 62  LWSASQVCRT---QFEKSARLTGHCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGN 115

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLD--DLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           FGS+  D  AAERYT  RL        D   +  +T  F PNYD    EPV L A+ PNV
Sbjct: 116 FGSMT-DGAAAERYTNVRLSHYGQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNV 174

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           L+NGG GI VG+ T +PT     V++    +     +      + ++      G ++  +
Sbjct: 175 LLNGGEGIGVGITTKLPTFTPESVLEVLNRMFKGEKLQAVDFAKTLKYHHKWGGQLVRSK 234

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
                      GS+       +     D +++ ++  P   N    ++K+  +    +  
Sbjct: 235 ENQAQWKQMFVGSMANLQFEAVLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHKC- 293

Query: 295 DIADLRDESDRQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYKPER 351
                   + +      IE K G +    D  + ++ + T  +  F +N+          
Sbjct: 294 -------FNSKGTTTYQIECKPGFNYDQFDKFVEKVRKATMQRQAFKINVT--------- 337

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
                  +      + V   +T++L     D       + +A+       RI       E
Sbjct: 338 -------RREAKTVDGVTTFKTEFLALSVPDLILQWCRMRVALELKSLAYRI----KKQE 386

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
            A        +    +  +   +  S         + ++  Q + IL+L++ +L+ L + 
Sbjct: 387 AAIAYSKLLIYAVDKLDLIFKALRQSDPDASLQKLLKITAEQAKQILDLQVRKLSKLDQS 446

Query: 472 DIRNELNSLGIEIKECLDILSSRSRL 497
            ++  L +   E+K+     +     
Sbjct: 447 KLKGTLKTQEQELKQLQTWQAKPKAQ 472


>gi|172073100|gb|ACB71407.1| ParC [Escherichia coli]
          Length = 130

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 61/130 (46%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 2   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNTSAKFKKSAR 61

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 62  TVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 120

Query: 135 LQKAAHFLLD 144
           L K +  LL 
Sbjct: 121 LSKYSELLLS 130


>gi|7021443|gb|AAF35348.1| DNA topoisomerase IV subunit C [Streptococcus pyogenes]
          Length = 124

 Score =  238 bits (606), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 67/123 (54%), Positives = 87/123 (70%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL+ M + G  + K Y K A+  G +MG +HPHG+ +IYDA+ RM+QDW  
Sbjct: 1   DGLKPVQRRILYSMNKDGNTFEKGYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKN 60

Query: 107 RLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           R +L+E  GN GS+DGDPPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP V
Sbjct: 61  REILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEKEPTV 120

Query: 167 LCA 169
           L A
Sbjct: 121 LPA 123


>gi|320089090|emb|CBY98845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 231

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 75/261 (28%), Positives = 133/261 (50%), Gaps = 56/261 (21%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G V++  L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF 
Sbjct: 1   MATASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFK 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
             A+R   GR + GVRGI LA  D+V+S+ I                             
Sbjct: 61  EDAVRAM-GRTATGVRGIKLAGDDKVVSLII----------------------------- 90

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                      E  ILTV++ G+GKRT++ ++   +R+ +G+ +
Sbjct: 91  ------------------------PRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVIS 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             V++ N  G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE
Sbjct: 127 IKVTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDE 184

Query: 890 RVVSVERIRESEIVDEAESTE 910
            VV ++R+ E    +E ++ +
Sbjct: 185 NVVGLQRVAEPVDDEELDAID 205



 Score = 68.3 bits (165), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 85/241 (35%), Gaps = 15/241 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L+ +   R  G     +   DE    DL   S    V+ FS+ G V + K
Sbjct: 3   TASGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDL--TSGSDEVMLFSAAGKVVRFK 60

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
              +      A G   +  + L   +++ +++             ++  T++G  +R   
Sbjct: 61  EDAVRAMGRTATG---VRGIKLAGDDKVVSLI------IPRGEGAILTVTQNGYGKRTAA 111

Query: 663 SDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            ++   +R+ +  + +        ++        + I++ T  G  VR  +S I    GR
Sbjct: 112 DEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEI-SVVGR 170

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
           N+ GV  I  A+ + V+ +  V     D +              +      +     +  
Sbjct: 171 NTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVAEGDEDIAPEAESDDDVADDAD 230

Query: 780 S 780
            
Sbjct: 231 E 231


>gi|217069473|gb|ACJ83225.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 200

 Score =  237 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 110/201 (54%), Positives = 150/201 (74%), Gaps = 1/201 (0%)

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
           E R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP
Sbjct: 1   EARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIP 60

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R
Sbjct: 61  PHSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVR 120

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             +HIEK   +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVV
Sbjct: 121 AKTHIEK-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 179

Query: 312 IELKRGASADVILNQLYRYTS 332
           IELKR A ++++LN L++ T+
Sbjct: 180 IELKRDAMSEIVLNNLFKSTT 200


>gi|219815943|gb|ACL37058.1| GyrA [Salmonella enterica]
          Length = 104

 Score =  237 bits (605), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 87/104 (83%)

Query: 22  TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V
Sbjct: 1   EEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDV 60

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 61  IGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 104


>gi|217069477|gb|ACJ83227.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 199

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 111/199 (55%), Positives = 147/199 (73%), Gaps = 1/199 (0%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE R+   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNI
Sbjct: 1   TEARMTILAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNI 60

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
           P H+L E+ DG + +IDN +  L+ +M  I+GPDFPTG +I G+ GI  AY TGRG + +
Sbjct: 61  PPHSLNELTDGLLYLIDNKNASLEEIMHFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKV 120

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           R  +HIEK   +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RV
Sbjct: 121 RAKTHIEK-RANKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRV 179

Query: 311 VIELKRGASADVILNQLYR 329
           VIELKR A ++++LN L++
Sbjct: 180 VIELKRDAMSEIVLNNLFK 198


>gi|258611761|ref|ZP_05711629.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
 gi|258605976|gb|EEW18584.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL R2-503]
          Length = 504

 Score =  237 bits (604), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 140/591 (23%), Positives = 259/591 (43%), Gaps = 96/591 (16%)

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           +N L++ T LQ  ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R
Sbjct: 1   MNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARAR 60

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            H+L GL  A++ LDEV+++IR S +   A+  L  +                       
Sbjct: 61  QHILEGLIKALSILDEVIKLIRGSKDKRDAKLNLQTK----------------------- 97

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                 SE Q  AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K+
Sbjct: 98  ---YDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKE 154

Query: 504 ELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRR 561
           EL  +K +  T RRT +      + ++ E  +  ED++V+V+  GYVKR     Y A   
Sbjct: 155 ELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNG 214

Query: 562 GGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINI 621
                  + M++ D    +  +++  S+L F+S G      V  LP    +  G  + ++
Sbjct: 215 A-----ELAMKEADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHL 269

Query: 622 L-SLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLD 679
              L+ GE I + +              +F TK+G  +++ ++++     S   +A+KL 
Sbjct: 270 ASDLSAGEEIRSAIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLK 326

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+LSV       DI L TK G  +R+ I+ I     R + GV+ I+L + D VI   
Sbjct: 327 GDDELLSVHLIDGTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAINLKQDDIVIGGI 385

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           ++                                                   +  +++ 
Sbjct: 386 VL---------------------------------------------------MPNEQKH 394

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           IL  +++G  K+  + +F   +R+ +G+      K N     + +   ++ND + + ++ 
Sbjct: 395 ILLATQRGSLKQMKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNT 453

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER-IRE----SEIVDE 905
             ++ + V  +RI  R + G  +     +    S+   I E    S+  DE
Sbjct: 454 DQIVEIDVANLRITDRYSNGSFVLDETMEGEPTSIWLAIPEIKDTSDAKDE 504


>gi|121822824|gb|ABM65609.1| DNA topoisomerase IV subunit [Shigella flexneri]
          Length = 119

 Score =  236 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 68/120 (56%), Positives = 89/120 (74%), Gaps = 3/120 (2%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTE 132
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 59

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMAT+IP 
Sbjct: 60  SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 119


>gi|328725424|ref|XP_003248474.1| PREDICTED: DNA gyrase subunit B-like, partial [Acyrthosiphon pisum]
          Length = 619

 Score =  236 bits (601), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/287 (29%), Positives = 146/287 (50%), Gaps = 56/287 (19%)

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
            ++N L +++ E I+T++   +  S  +  Y+VFATKHG V+R+KLS+F +IN++GKIA+
Sbjct: 339 PIVNALEIDKDEMISTMIAVKDLSSEED--YLVFATKHGTVKRSKLSNFSRINKNGKIAI 396

Query: 677 KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
                DE+++V       +I++ TK    +RF  S +R   GR + GV+GI+L + D+VI
Sbjct: 397 NFKEGDELIAVRLTDGTKEIIIGTKHASLIRFDESKLRPL-GRTAAGVKGITLREDDEVI 455

Query: 737 SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK 796
            + +                                                       +
Sbjct: 456 GLDVTDE---------------------------------------------------DQ 464

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           +  IL V+EKG+GKRTS+  +RISNR GKGI+   +++ N  G LV +  VN ++ +++V
Sbjct: 465 QDEILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKN--GNLVCITTVNGDEDLMIV 522

Query: 857 SDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           ++ G +IR+ V +I    R+ +GV +     ++ V +V ++   E  
Sbjct: 523 TNSGVIIRLHVADISQNGRSAQGVRLIRLGDNQHVATVAKVEPDENE 569



 Score = 87.9 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           V   +    A    D +   +  +  +   +      I +       E   +    ++L 
Sbjct: 303 VEGDSAGGSAKLRRDSKTQAILPLRGKILNVEKARLPIVNALEIDKDEMISTMIAVKDLS 362

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E +++  ++ G  KR+   +F   N++GK   A +  +      L+AV   +   +II
Sbjct: 363 SEEDYLVFATKHGTVKRSKLSNFSRINKNGK--IAINFKEG---DELIAVRLTDGTKEII 417

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDE 905
           + +   +LIR   +++R   R   GV   +  +D+ V+ ++ + + +  DE
Sbjct: 418 IGTKHASLIRFDESKLRPLGRTAAGVKGITLREDDEVIGLD-VTDEDQQDE 467



 Score = 74.4 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 102/281 (36%), Gaps = 13/281 (4%)

Query: 520 IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                  +  +D    ED +V  +  G VKR  LS +    + GK    +  ++ D +  
Sbjct: 349 DEMISTMIAVKDLSSEEDYLVFATKHGTVKRSKLSNFSRINKNGKI--AINFKEGDELIA 406

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
           + +      ++  +    + +    +L      A   A +  ++L + + +  +    ED
Sbjct: 407 VRLTDGTKEIIIGTKHASLIRFDESKLRPLGRTA---AGVKGITLREDDEVIGLDVTDED 463

Query: 640 ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK---IAMKLDSRDEILSVETCTQENDI 696
           +       ++  T+ G  +R     +   NR GK    A   +    ++ + T   + D+
Sbjct: 464 QQDE----ILIVTEKGYGKRTSADQYRISNRGGKGIKTATLTEKNGNLVCITTVNGDEDL 519

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           ++ T  G  +R  ++ I    GR++ GVR I L     V ++A V   + +  E      
Sbjct: 520 MIVTNSGVIIRLHVADI-SQNGRSAQGVRLIRLGDNQHVATVAKVEPDENEIAESPVEGV 578

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
                   +     +             ++E+  ++   +E
Sbjct: 579 LEETTETEVVETETQDGKEDLREDFIERVNEDIEEQDNNEE 619


>gi|161705231|gb|ABX76740.1| ParC [Escherichia coli]
          Length = 134

 Score =  235 bits (600), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 61/130 (46%), Positives = 89/130 (68%), Gaps = 3/130 (2%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +++ +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR
Sbjct: 6   ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
             G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE R
Sbjct: 66  TVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124

Query: 135 LQKAAHFLLD 144
           L K +  LL 
Sbjct: 125 LSKYSELLLS 134


>gi|213864968|ref|ZP_03387087.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 295

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 147/294 (50%), Positives = 196/294 (66%), Gaps = 9/294 (3%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG 
Sbjct: 1   TNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 60

Query: 248 IVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           + IR  + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ 
Sbjct: 61  VYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKD 120

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R 
Sbjct: 121 GMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRR 180

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
           EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  +
Sbjct: 181 EVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGN 240

Query: 427 IKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           +  +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + 
Sbjct: 241 VAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEK 294


>gi|321268250|gb|ADW78933.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 65/112 (58%), Positives = 88/112 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR L
Sbjct: 1   KPVHRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYL 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           L++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D + 
Sbjct: 61  LVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTL 112


>gi|208972194|gb|ACI32675.1| GyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 117

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 67/115 (58%), Positives = 87/115 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++G+GNFGS+DGD
Sbjct: 3   GNDWNKAYKKSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGRGNFGSIDGD 62

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             AA RYTE RL K AH L+ DL K+TVDF  NYDG+ + P V+  + PN+LVNG
Sbjct: 63  SAAAMRYTEIRLAKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNG 117


>gi|185178912|ref|ZP_02964680.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|184209172|gb|EDU06215.1| DNA gyrase/topoisomerase IV, A subunit [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
          Length = 126

 Score =  235 bits (598), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 86/123 (69%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            ++ I +  + + +  SY  YA  +I  RA+PD+RDGLKPV RRIL+ M ++G+  +K Y
Sbjct: 4   NQQKIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPY 63

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  AA RYT
Sbjct: 64  KKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAAAMRYT 123

Query: 132 ECR 134
           E R
Sbjct: 124 ETR 126


>gi|296005999|gb|ADG65216.1| gyrase subunit A [Mycobacterium tuberculosis]
          Length = 105

 Score =  234 bits (597), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 77/103 (74%)

Query: 29  YLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPH 88
           Y+ YA++VI+GRA+P++RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPH
Sbjct: 1   YIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPH 60

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
           G+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  GDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYT 103


>gi|28916612|gb|AAO59539.1| gyrase A [Bacillus subtilis subsp. subtilis]
          Length = 197

 Score =  234 bits (596), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 121/197 (61%), Positives = 158/197 (80%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDT+D++ NYDGS  +PVVL +R PN+LVNG  GIAVGMATNIP H LGE++DG +A  +
Sbjct: 1   KDTIDYQDNYDGSEGDPVVLPSRLPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAGSE 60

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP I +  LME+I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+
Sbjct: 61  NPGIPIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERII 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN L
Sbjct: 121 VTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNL 180

Query: 328 YRYTSLQSLFSVNMVAL 344
           Y+ T+LQ+ F +N++AL
Sbjct: 181 YKQTALQTSFGINLLAL 197


>gi|301014720|gb|ADK47159.1| topoisomerase IV [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 114

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 3/115 (2%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           +A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  SACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 114


>gi|46946648|gb|AAT06572.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 65/113 (57%), Positives = 86/113 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   A
Sbjct: 2   WNAAYKKSARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           A RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 62  AMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|15215561|gb|AAK91512.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  232 bits (592), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  
Sbjct: 63  GDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|156628728|gb|ABU89281.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628730|gb|ABU89282.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628734|gb|ABU89284.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628736|gb|ABU89285.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 113

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 59/114 (51%), Positives = 81/114 (71%), Gaps = 3/114 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLL 143
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELLL 113


>gi|46946646|gb|AAT06571.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 65/113 (57%), Positives = 86/113 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG+  +YD + RMAQ++++R +LI+GQGNFGSVDG   A
Sbjct: 2   WNAAYKKSARIVGDVIGKYHPHGDFPVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           A RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 62  AMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|321268246|gb|ADW78931.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268254|gb|ADW78935.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  232 bits (591), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 64/112 (57%), Positives = 87/112 (77%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++
Sbjct: 1   HRRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVD 60

Query: 113 GQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 112


>gi|110590001|gb|ABG77447.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  231 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 86/121 (71%), Gaps = 3/121 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLP 119

Query: 169 A 169
           A
Sbjct: 120 A 120


>gi|46946650|gb|AAT06573.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 114

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 65/113 (57%), Positives = 86/113 (76%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WN  Y K ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSVDG   A
Sbjct: 2   WNAAYKKSARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSVDGLAAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           A RYTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 62  AMRYTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 114


>gi|114228541|gb|ABI58275.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 115

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 60/116 (51%), Positives = 83/116 (71%), Gaps = 3/116 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKY
Sbjct: 1   ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKY 60

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAA 139
           HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A
Sbjct: 61  HPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYA 115


>gi|52630911|gb|AAU84919.1| DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 118

 Score =  231 bits (589), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 85/119 (71%), Gaps = 3/119 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 1   DGLKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSY 60

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           R  LI+GQGN+G+ D DP   AA RYTE RL K +  LL +LG  TVD+ PN+DG+ QE
Sbjct: 61  RYPLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQE 118


>gi|56550031|gb|AAS75324.2| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 112

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK A+   + MG YHPHG++AIYD + RMAQ WS+R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSAKPVSDTMGNYHPHGDSAIYDTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTE RL   A  ++ D+ ++TVDF+PNYDG   EPV+L +R P +L+NG GG
Sbjct: 61  YTEARLTPLAMEMVRDIRENTVDFQPNYDGRTTEPVILPSRVPQLLMNGSGG 112


>gi|321268236|gb|ADW78926.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268238|gb|ADW78927.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268248|gb|ADW78932.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268252|gb|ADW78934.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 113

 Score =  231 bits (588), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 64/113 (56%), Positives = 87/113 (76%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           QGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 113


>gi|15215563|gb|AAK91513.1| gyrase subunit A [Campylobacter coli]
 gi|15215565|gb|AAK91514.1| gyrase subunit A [Campylobacter coli]
          Length = 109

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 64/107 (59%), Positives = 84/107 (78%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGA 109


>gi|164456292|dbj|BAF97649.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456302|dbj|BAF97654.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456308|dbj|BAF97657.1| DNA gyrase subunit A [Corynebacterium accolens]
 gi|164456314|dbj|BAF97660.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456318|dbj|BAF97662.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456328|dbj|BAF97667.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 81/112 (72%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|92919084|gb|ABE96893.1| DNA gyrase A subunit [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 98

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 63/98 (64%), Positives = 80/98 (81%)

Query: 37  ILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDA 96
           I+GRA+PD+RDGLKPVHRR+LF M ++   +N+ Y K AR+ G+V+GKYHPHG+ A+YD 
Sbjct: 1   IVGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARVVGDVIGKYHPHGDTAVYDT 60

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           + RMAQ +SLR  L++GQGNFGSVDGD PAA RYTE R
Sbjct: 61  IVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIR 98


>gi|156628732|gb|ABU89283.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628738|gb|ABU89286.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628740|gb|ABU89287.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628742|gb|ABU89288.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
 gi|156628744|gb|ABU89289.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 112

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 58/113 (51%), Positives = 80/113 (70%), Gaps = 3/113 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K A  L
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAELL 112


>gi|45685139|gb|AAS75323.1| DNA gyrase subunit A [Corynebacterium striatum]
          Length = 112

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 82/112 (73%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTECR+   A  ++ D+ ++TVDF PNYDG  QEP +L +R PN+L+NG GG
Sbjct: 61  YTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGG 112


>gi|110589997|gb|ABG77445.1| topoisomerase IV subunit [Shigella flexneri]
 gi|110589999|gb|ABG77446.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590003|gb|ABG77448.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590005|gb|ABG77449.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590007|gb|ABG77450.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590009|gb|ABG77451.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590011|gb|ABG77452.1| topoisomerase IV subunit [Shigella flexneri 2a]
 gi|110590013|gb|ABG77453.1| topoisomerase IV subunit [Shigella flexneri 2a]
          Length = 120

 Score =  229 bits (584), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 3/121 (2%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L
Sbjct: 1   PVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPL 60

Query: 111 IEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           ++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L 
Sbjct: 61  VDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLP 119

Query: 169 A 169
           A
Sbjct: 120 A 120


>gi|217069463|gb|ACJ83220.1| DNA gyrase subunit A [Campylobacter lari subsp. lari]
          Length = 194

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 147/195 (75%), Gaps = 1/195 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 1   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 60

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 61  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 120

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K   +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 121 K-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 179

Query: 318 ASADVILNQLYRYTS 332
           A ++++LN L++ T+
Sbjct: 180 AMSEIVLNNLFKSTT 194


>gi|217069483|gb|ACJ83230.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 196

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 108/195 (55%), Positives = 147/195 (75%), Gaps = 1/195 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 122

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K   +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 123 K-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 181

Query: 318 ASADVILNQLYRYTS 332
           A ++++LN L++ T+
Sbjct: 182 AMSEIVLNNLFKSTT 196


>gi|321268256|gb|ADW78936.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 86/111 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++G
Sbjct: 1   RRVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           QGNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  QGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 111


>gi|312192225|gb|ADQ43809.1| topoisomerase IV subunit A [Aerococcus sanguinicola]
          Length = 116

 Score =  228 bits (581), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 63/116 (54%), Positives = 80/116 (68%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M   G   +  + K A+  G V+G YHPHG++++YDA+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYAMFVDGNTSSHNFRKSAKTVGNVIGNYHPHGDSSVYDAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           QDW  R +LIE  GN GS+DGDP AA RYTE RL K A  LL DL K TV+   N+
Sbjct: 61  QDWKNREVLIEMHGNNGSMDGDPAAAMRYTEARLSKIADELLADLDKQTVETMLNF 116


>gi|217069481|gb|ACJ83229.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 201

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 109/199 (54%), Positives = 149/199 (74%), Gaps = 1/199 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 4   LAEELLRDIEKDTVDFIPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 63

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 64  LIDGLLYLIDNKNASLEEIMQFIKGPDFPTGGIIFGKKGIIEAYRTGRGRVKVRAKTHIE 123

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K   +++ IV+ E+PYQ NKA ++E+IAEL +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 124 K-RVNKDIIVIDELPYQTNKARLIEQIAELAKEKQIEGIAEVRDESDREGIRVVIELKRD 182

Query: 318 ASADVILNQLYRYTSLQSL 336
           A ++++LN L++ T+++  
Sbjct: 183 AMSEIVLNNLFKSTTMEIT 201


>gi|15215559|gb|AAK91511.1| gyrase subunit A [Campylobacter coli]
          Length = 108

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 84/106 (79%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I + +++SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M  +GV     Y K ARI 
Sbjct: 3   IDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIV 62

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD 
Sbjct: 63  GDVIGKYHPHGDIAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDG 108


>gi|164456320|dbj|BAF97663.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|46946652|gb|AAT06574.1| DNA gyrase subunit A [Neisseria gonorrhoeae]
          Length = 110

 Score =  227 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 85/110 (77%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSVDG   AA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           YTE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 61  YTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 110


>gi|21666246|gb|AAM73627.1|AF363611_1 DNA topoisomerase IV subunit [Proteus mirabilis]
          Length = 116

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 62/117 (52%), Positives = 84/117 (71%), Gaps = 3/117 (2%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R 
Sbjct: 1   LKPVQRRIVYAMSELGLNSSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            LI+GQGN+G+ D DP   AA RYTE RL K +  LL +LG  TVD+ PN+DG+ QE
Sbjct: 61  PLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQILLSELGHGTVDWIPNFDGTLQE 116


>gi|164456324|dbj|BAF97665.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  227 bits (579), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY+ L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYETLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|217069465|gb|ACJ83221.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 194

 Score =  227 bits (578), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 107/192 (55%), Positives = 145/192 (75%), Gaps = 1/192 (0%)

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
            A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E
Sbjct: 3   LAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNE 62

Query: 198 VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
           ++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIE
Sbjct: 63  LIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIE 122

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
           K   +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR 
Sbjct: 123 K-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRD 181

Query: 318 ASADVILNQLYR 329
           A ++++LN L++
Sbjct: 182 AMSEIVLNNLFK 193


>gi|312232294|gb|ADQ53543.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  227 bits (578), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 3/114 (2%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           +  Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  L
Sbjct: 61  SPCYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 113


>gi|21666248|gb|AAM73628.1|AF363612_1 DNA topoisomerase IV subunit [Providencia stuartii]
          Length = 116

 Score =  226 bits (577), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 3/117 (2%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPV RRI++ M ++G+    KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R 
Sbjct: 1   LKPVQRRIVYAMSELGLNNTAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            L++GQGN+G+ D DP   AA RYTE RL K A  LL +L   TVD+ PN+DG+  E
Sbjct: 61  PLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNE 116


>gi|260100982|gb|ACX31656.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Newport]
          Length = 109

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 63/109 (57%), Positives = 84/109 (77%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++G
Sbjct: 1   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           QGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N+DG+ +
Sbjct: 61  QGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNHDGTEK 109


>gi|156628726|gb|ABU89280.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 114

 Score =  226 bits (577), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 80/115 (69%), Gaps = 3/115 (2%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 1   YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 60

Query: 92  AIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLD 144
           A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA  YTE RL K A  LL 
Sbjct: 61  ACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMCYTESRLSKYAELLLS 114


>gi|5712089|gb|AAD47358.1|AF038578_1 gyrase A subunit [Pseudomonas stutzeri]
          Length = 255

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 72/264 (27%), Positives = 119/264 (45%), Gaps = 56/264 (21%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+  AT  G V++  L  F +   SG IA++L+  D +++        ++++ +  G+ +
Sbjct: 6   YIFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCAQEVMMFSDGGKVI 65

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
           RF  S +R   GR + GVRG+ L +G ++ISM I                          
Sbjct: 66  RFKESKVR-MMGRTARGVRGMRLPEGQRIISMLI-------------------------- 98

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                            ILT S +G+GKRT+  +     R G+G
Sbjct: 99  ---------------------------PELGAQILTASVRGYGKRTAMEEVPRRGRGGQG 131

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           + A   ++ N  GALV    V + ++I+L+SD+GTL+R  V+E+    R T+GV +    
Sbjct: 132 VIAMVTNERN--GALVGAVQVLEGEEIMLISDQGTLVRTRVDEVSSLGRNTQGVTLIKLG 189

Query: 887 KDERVVSVERIRESEIVDEAESTE 910
           K+E +V +ER++E    D  E  E
Sbjct: 190 KNEHLVGLERVQEPSEEDVLEDVE 213



 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
           +    +I   + KG  K+T    F        G+ A  + +      L+A    +   ++
Sbjct: 1   EPTGAYIFMATAKGTVKKTPLVQFSRPR--SSGLIALRLEEG---DTLIAAAVTDCAQEV 55

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
           ++ SD G +IR   +++R+  R  +GV      + +R++S+  I E
Sbjct: 56  MMFSDGGKVIRFKESKVRMMGRTARGVRGMRLPEGQRIISM-LIPE 100



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 89/262 (33%), Gaps = 15/262 (5%)

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
            +   +  G VK+ PL  +   R  G     +   D      +   +    V+ FS  G 
Sbjct: 6   YIFMATAKGTVKKTPLVQFSRPRSSGLIALRLEEGDTLIAAAVTDCA--QEVMMFSDGGK 63

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           V + K  ++ +    ARG   +  + L +G+RI +++             ++ A+  G  
Sbjct: 64  VIRFKESKVRMMGRTARG---VRGMRLPEGQRIISMLIPEL------GAQILTASVRGYG 114

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + +  +  R G+  + + + +     +      +  +I+L +  G  VR  +  + 
Sbjct: 115 KRTAMEEVPRRGRGGQGVIAMVTNERNGALVGAVQVLEGEEIMLISDQGTLVRTRVDEVS 174

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
              GRN+ GV  I L K + ++ +  V     +                           
Sbjct: 175 SL-GRNTQGVTLIKLGKNEHLVGLERVQEPSEEDVLEDVEASLDEESLEKEMPVVSTEPD 233

Query: 775 LKNDSSVEGNISEERCQELKLK 796
                   G++  +       +
Sbjct: 234 EDELLGGGGDVPPDVVPTDDQE 255


>gi|164456286|dbj|BAF97646.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYGTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|254993922|ref|ZP_05276112.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J2-064]
          Length = 492

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 134/579 (23%), Positives = 251/579 (43%), Gaps = 96/579 (16%)

Query: 336 LFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
            ++ NMVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R H+L GL  A++
Sbjct: 1   SYNFNMVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALS 60

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
            LDEV+++IR S +   A+  L  +                             SE Q  
Sbjct: 61  ILDEVIKLIRGSKDKRDAKLNLQTK--------------------------YDFSEKQAE 94

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K+EL  +K +  T 
Sbjct: 95  AIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTA 154

Query: 516 RRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRD 573
           RRT +      + ++ E  +  ED++V+V+  GYVKR     Y A          + M++
Sbjct: 155 RRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKE 209

Query: 574 EDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITT 632
            D    +  +++  S+L F+S G      V  LP    +  G  + ++   L+ GE I +
Sbjct: 210 ADHAVFIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRS 269

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCT 691
            +              +F TK+G  +++ ++++     S   +A+KL   DE+L+V    
Sbjct: 270 AIAIQAFT---EEKRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLID 326

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
              DI L TK G  +R+ I+ I     R + GV+ I+L + D VI   ++          
Sbjct: 327 GTEDIFLATKNGYGLRYSITEIPESGARTA-GVKAINLKQDDIVIGGIVL---------- 375

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                                    +  +++ IL  +++G  K+
Sbjct: 376 -----------------------------------------MPNEQKHILLATQRGSLKQ 394

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
             + +F   +R+ +G+      K N     + +   ++ND + + ++   ++ + V  +R
Sbjct: 395 MKASEFEPISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLR 453

Query: 872 IASRATKGVVIFSTAKDERVVSVER-IRE----SEIVDE 905
           I  R + G  +     +    S+   I E    S+  DE
Sbjct: 454 ITDRYSNGSFVLDETMEGEPTSIWLAIPEIKDTSDAKDE 492


>gi|321268234|gb|ADW78925.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 111

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/111 (55%), Positives = 85/111 (76%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP 
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPK 111


>gi|164456310|dbj|BAF97658.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 62/112 (55%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+AAIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDAAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|289808119|ref|ZP_06538748.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 346

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 152/335 (45%), Positives = 212/335 (63%), Gaps = 9/335 (2%)

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
             +I GR GI+ AY TGRG + IR  + +E      RE I+V EIPYQVNKA ++EKIAE
Sbjct: 11  PPIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAE 70

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LV++KR+  I+ LRDESD+ G R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+ 
Sbjct: 71  LVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHH 130

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L  I+ AFV  R EVV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR 
Sbjct: 131 GQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRR 190

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAIL 458
           +P P  A+  L+ R W+  ++  +++   D +             DG  YL+E Q +AIL
Sbjct: 191 APTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAIL 250

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           +LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I++E+  ++D+    RRT
Sbjct: 251 DLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDERRT 310

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            I     D+  ED I +E++VVT+SH GYVK  PL
Sbjct: 311 EITANSADINIEDLISQENVVVTLSHQGYVKYQPL 345


>gi|312877897|ref|ZP_07737842.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795323|gb|EFR11707.1| DNA gyrase repeat beta-propeller [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 237

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 144/297 (48%), Gaps = 61/297 (20%)

Query: 606 LPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF 665
           +P GS QA+G A++N++ + + E+IT  M   +        Y++  TK+G +++  LS+F
Sbjct: 1   MPEGSRQAKGTAIVNLIQIGKDEKITATMAVKDF----KEGYLMMCTKNGTIKKVLLSEF 56

Query: 666 IQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
               ++GK A+ L   D ++ V+  +  ++I+L +  G CV F  + +RV  GR++ GV+
Sbjct: 57  ENTTKAGKKAITLADDDSLVDVKLTSGNDEIVLVSSSGYCVVFNENDVRVM-GRSAQGVK 115

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++L  GD ++ M                                               
Sbjct: 116 GMTLESGDFIVGM----------------------------------------------- 128

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
                 E     +++L V+E GFGKR+   ++R + R  KG+    V+  ++ G +V + 
Sbjct: 129 ------EKANDGKYLLCVTENGFGKRSEIEEYRKTKRGAKGVLTYKVT--DKTGKIVDIK 180

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE-RVVSVERIRESE 901
            VND+D+I++ S +G  IR+ V+++ +  R T+GV +     D  +V S+ RI+  E
Sbjct: 181 MVNDDDEIMICSTEGIFIRLEVSQVPVQGRNTQGVKLMRIDGDSIKVSSIARIKAEE 237


>gi|90017826|gb|ABD83869.1| topoisomerase II subunit A [Haemophilus sp. COAD036]
 gi|90017828|gb|ABD83870.1| topoisomerase II subunit A [Haemophilus sp. COAD165]
 gi|90017830|gb|ABD83871.1| topoisomerase II subunit A [Haemophilus sp. COAD591]
          Length = 115

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 68/114 (59%), Positives = 83/114 (72%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M + G   NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   SMDREGNTANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           S+DGD PAA RYTE R+QK    LL DL K+TV+F PNYDG    P VL  R P
Sbjct: 61  SIDGDAPAAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIP 114


>gi|321268242|gb|ADW78929.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 112

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 86/112 (76%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV 166
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP V
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEPKV 112


>gi|121533295|ref|ZP_01665123.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
 gi|121307854|gb|EAX48768.1| DNA gyrase C-terminal repeat, beta-propeller [Thermosinus
           carboxydivorans Nor1]
          Length = 199

 Score =  226 bits (575), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 71/255 (27%), Positives = 119/255 (46%), Gaps = 56/255 (21%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            ATK G V++ +L +F    + G IA+ LD  DE++ V+    E  ILL T+ G  + FP
Sbjct: 1   MATKKGIVKKTELLEFDTARKIGLIALTLDEDDELIDVKLTNGEQHILLGTRDGMAINFP 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +RV  GR + GV+GI+L  GD V+ M  V                            
Sbjct: 61  ESQVRVM-GRTAHGVKGITLRDGDVVVGMDTVK--------------------------- 92

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     K+  +LTV+E G+GKRT   ++R  +R GKG+  
Sbjct: 93  --------------------------KDGHVLTVTEAGYGKRTPVEEYRQQSRGGKGLIN 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             +++  + G ++ +  V    +++L++  G +IR  V+EI +  R T+GV + S  +++
Sbjct: 127 NKITE--KTGKVIGLKVVRPGQELMLITGDGVVIRTKVDEISVTGRNTQGVKVMSVGEND 184

Query: 890 RVVSVERIRESEIVD 904
           RVV++  + +    D
Sbjct: 185 RVVALAAVDKKSDSD 199


>gi|164456288|dbj|BAF97647.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456294|dbj|BAF97650.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456306|dbj|BAF97656.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456312|dbj|BAF97659.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 80/112 (71%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY+ L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYNTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|312232292|gb|ADQ53542.1| topoisomerase IV [Escherichia coli]
          Length = 113

 Score =  225 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 3/114 (2%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGN 90
            Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+
Sbjct: 1   NYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGD 60

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
            A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  L
Sbjct: 61  IACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 113


>gi|313635489|gb|EFS01727.1| DNA gyrase, A subunit [Listeria seeligeri FSL N1-067]
          Length = 112

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 84/110 (76%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3   ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
            Y K ARI GEV+GKYHPHG+ A+Y  + RMAQD+S R +L++G GNFGS
Sbjct: 63  AYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGS 112


>gi|164456296|dbj|BAF97651.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456298|dbj|BAF97652.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456304|dbj|BAF97655.1| DNA gyrase subunit A [Corynebacterium mastitidis]
 gi|164456322|dbj|BAF97664.1| DNA gyrase subunit A [Corynebacterium mastitidis]
          Length = 112

 Score =  225 bits (573), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG++AIYD L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++ VDF PNYD    EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENAVDFSPNYDDKTMEPDVLPSRVPNLLMNGSGG 112


>gi|28865596|emb|CAD48112.1| gyrase A subunit [Haemophilus influenzae]
          Length = 108

 Score =  225 bits (572), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/108 (58%), Positives = 79/108 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD PAA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
            R+QK    LL DL K+TV+F PNYDG    P VL  R P +L NG  
Sbjct: 61  VRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSS 108


>gi|164456290|dbj|BAF97648.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456300|dbj|BAF97653.1| DNA gyrase subunit A [Corynebacterium macginleyi]
 gi|164456326|dbj|BAF97666.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYHTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|164604815|gb|ABY61968.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG++AIY ++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL 
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|183220091|ref|YP_001838087.1| DNA gyrase/topoisomerase subunit A [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|167778513|gb|ABZ96811.1| DNA gyrase/topoisomerase, type IV, subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 461

 Score =  224 bits (571), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 115/523 (21%), Positives = 204/523 (39%), Gaps = 70/523 (13%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M+   + ++E+  K        D++ +    Y+  V   RAIP   DGLKPV RRIL+ M
Sbjct: 1   MSFGTMKNEEQYPKR----PFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAM 56

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD--WSLRLLLIEGQGNFG 118
                +   ++ K  +++G  MG YHPHG+ +I DAL++MAQD  ++    L+ G+G FG
Sbjct: 57  W--NSDARNRHTKTVKVAGLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFG 113

Query: 119 SVDGDPP-AAERYTECRLQKAAHFL-----LDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            V      A+ RYTE +L   A  L     L D+     D+  NYD +  EP+    + P
Sbjct: 114 DVLDPNAIASPRYTEVKLSDFAKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVP 168

Query: 173 NVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            VL+N   GIA G    IP H L +V++  V  +         +    +G          
Sbjct: 169 VVLLNNIQGIATGFRCFIPAHKLSDVIESQVTYLKTGKP--KKITPWYKG---------Y 217

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           G     +    G   +        E        + + + P   N+  ++  + +L+ E++
Sbjct: 218 GGEVKLSKNDNGNTVMSTTFGFKKEDGK-----LYLVDSPMNWNREKVVNYLDDLI-ERK 271

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
              + D  D S +     +I  K    ++  + +L+  T   +      V  +  K   F
Sbjct: 272 DNWLKDYVDHSSQTFKIELIAKKGEEPSEKEIKELF--TKENNEVLTINVITHEGKLRNF 329

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
               I+K F  FR+  ++RR K L    +++               E++R I        
Sbjct: 330 GPEEIIKRFCDFRKTHLIRRFKRLAGLEKEKI----------DRNSELIRFI-------- 371

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            +    ++       K+  D +  + +                 +  + + R+T      
Sbjct: 372 -KERWNEKVTGIKSKKEFEDKLKAAKFVYF------------EWLSSIPVYRMTLEEVRK 418

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
             + +     +  E   +     +L G +  EL  +K + D  
Sbjct: 419 CEDAIVEAKTKYTEYTTLQKDDKKLTGFMTDELDELKKKWDPK 461


>gi|208972196|gb|ACI32676.1| ParC [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 119

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 60/120 (50%), Positives = 83/120 (69%), Gaps = 3/120 (2%)

Query: 23  DEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM 82
           +  +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+
Sbjct: 1   EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVL 60

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAH 140
           GKYHPHG++A Y A+  MAQ +S R  L++GQGN G+ D DP   AA RYTE RL K A 
Sbjct: 61  GKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNGGAPD-DPKSFAAMRYTESRLSKDAE 119


>gi|164456316|dbj|BAF97661.1| DNA gyrase subunit A [Corynebacterium macginleyi]
          Length = 112

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 61/112 (54%), Positives = 79/112 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            YVK AR   + MG++HPHG+ AIY  L R+AQ W++R  L++GQGNFGS   D PAA R
Sbjct: 1   GYVKSARPVSDTMGQFHPHGDLAIYYTLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMR 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGG 181
           YTEC+L   A  ++ D+ ++TVDF PNYDG   EP VL +R PN+L+NG GG
Sbjct: 61  YTECKLTPLAMEMVRDIRENTVDFSPNYDGKTSEPDVLPSRVPNLLMNGSGG 112


>gi|217069471|gb|ACJ83224.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 190

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 106/190 (55%), Positives = 144/190 (75%), Gaps = 1/190 (0%)

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV 199
             LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++
Sbjct: 1   EELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELI 60

Query: 200 DGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT 259
           DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK 
Sbjct: 61  DGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK- 119

Query: 260 SGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
             +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A 
Sbjct: 120 RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAM 179

Query: 320 ADVILNQLYR 329
           ++++LN L++
Sbjct: 180 SEIVLNNLFK 189


>gi|217069487|gb|ACJ83232.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 190

 Score =  224 bits (570), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 109/191 (57%), Positives = 144/191 (75%), Gaps = 1/191 (0%)

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E+VDG + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +
Sbjct: 61  LNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKT 120

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIEK   +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIEL
Sbjct: 121 HIEK-KSNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIEL 179

Query: 315 KRGASADVILN 325
           KR A ++++LN
Sbjct: 180 KREAMSEIVLN 190


>gi|321268232|gb|ADW78924.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268244|gb|ADW78930.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 110

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +  EP
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDTLYEP 110


>gi|61654895|gb|AAX48942.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654897|gb|AAX48943.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654899|gb|AAX48944.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654907|gb|AAX48948.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  224 bits (570), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 61/122 (50%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 61  D-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNG 119

Query: 179 GG 180
             
Sbjct: 120 TT 121


>gi|3914279|sp|O68891|PARC_ENTSA RecName: Full=DNA topoisomerase 4 subunit A; AltName:
           Full=Topoisomerase IV subunit A
 gi|3046560|gb|AAC13493.1| DNA topoisomerase IV subunit C [Citrobacter freundii]
 gi|3046562|gb|AAC13494.1| DNA topoisomerase IV subunit C [Cronobacter sakazakii]
          Length = 110

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 56/111 (50%), Positives = 79/111 (71%), Gaps = 3/111 (2%)

Query: 34  INVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI 93
           + VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A 
Sbjct: 1   MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFL 142
           Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K +  L
Sbjct: 61  YEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 110


>gi|217069491|gb|ACJ83234.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 187

 Score =  223 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 109/188 (57%), Positives = 144/188 (76%), Gaps = 1/188 (0%)

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
            LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VD
Sbjct: 1   ELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVD 60

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK  
Sbjct: 61  GLLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEK-K 119

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A +
Sbjct: 120 SNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMS 179

Query: 321 DVILNQLY 328
           +++LN L+
Sbjct: 180 EIVLNNLF 187


>gi|18389162|gb|AAL67640.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389164|gb|AAL67641.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389166|gb|AAL67642.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389168|gb|AAL67643.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389170|gb|AAL67644.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389172|gb|AAL67645.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389174|gb|AAL67646.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389176|gb|AAL67647.1| DNA topoisomerase IV subunit [Escherichia coli]
 gi|18389178|gb|AAL67648.1| DNA topoisomerase IV subunit [Escherichia coli]
          Length = 120

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 61/121 (50%), Positives = 86/121 (71%), Gaps = 3/121 (2%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 1   ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 GDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
            DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG 
Sbjct: 61  -DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGT 119

Query: 180 G 180
            
Sbjct: 120 T 120


>gi|315926261|ref|ZP_07922447.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620438|gb|EFV00433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 208

 Score =  223 bits (569), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 106/208 (50%), Positives = 142/208 (68%), Gaps = 5/208 (2%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           ++ D+ +DT DF+PNYD    EPVVL +R+PN+LVNG  GIAVGMATNIPTHNL EV + 
Sbjct: 1   MVRDIDQDTADFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNLREVNEA 60

Query: 202 CVAVIDNPDIDLDA----LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
               + +P+   +      ME I+GPDFP GA+I+GR GI++AY TGRGS+ +R V  +E
Sbjct: 61  VQWSLAHPNASHEELLEACMERIKGPDFPGGALIVGRQGIEDAYRTGRGSVTMRAVIDME 120

Query: 258 KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-RQGYRVVIELKR 316
           +    R+ +VVTE+PY  N   +  KIA+LV   RI  IAD+RD+S  R G R+VI LKR
Sbjct: 121 EDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQRLVIVLKR 180

Query: 317 GASADVILNQLYRYTSLQSLFSVNMVAL 344
            A   V++N LY++T+LQ  F  NM+AL
Sbjct: 181 DAQPRVVMNNLYKHTALQDTFGCNMLAL 208


>gi|319827192|gb|ADV74813.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  223 bits (569), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 79/116 (68%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+++IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|217069475|gb|ACJ83226.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 191

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 106/192 (55%), Positives = 143/192 (74%), Gaps = 1/192 (0%)

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           +   A  LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+
Sbjct: 1   MTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHS 60

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L E++DG + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +
Sbjct: 61  LNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKT 120

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
           HIEK   +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIEL
Sbjct: 121 HIEK-RANKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIEL 179

Query: 315 KRGASADVILNQ 326
           KR A ++++LN 
Sbjct: 180 KRDAMSEIVLNN 191


>gi|164604813|gb|ABY61967.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDFAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL 
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|49354925|gb|AAT65185.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 79/101 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|45550208|gb|AAS67882.1| GyrA [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 104

 Score =  222 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|161339335|gb|ABX64408.1| gyrase [Streptococcus suis]
 gi|164604811|gb|ABY61966.1| gyrase [Streptococcus suis]
          Length = 105

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 63/105 (60%), Positives = 79/105 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI G+VMGKYHPHG+ AIY+++ RMAQ +S R +L++G GNFGSVDGD
Sbjct: 1   GVTPDKPHKKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
             AA RYTE R+ K A  +L D+ K+TVDF+ NYD S QEPVVL 
Sbjct: 61  GAAAMRYTEARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLP 105


>gi|18034055|gb|AAL57340.1|AF397169_1 GyrA [Proteus mirabilis]
          Length = 98

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 78/98 (79%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R 
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|110456319|gb|ABG74700.1| GyrA [Neisseria gonorrhoeae]
          Length = 109

 Score =  222 bits (565), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 62/109 (56%), Positives = 84/109 (77%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K ARI G+V+GKYHPHG+ A+Y+ + RMA ++++R +LI+GQGNFGSVDG   AA RY
Sbjct: 1   YKKSARIVGDVIGKYHPHGDFAVYNTIVRMAHNFAMRYVLIDGQGNFGSVDGLAAAAMRY 60

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
           TE R+ K +H +L D+ ++TV+F PNYDGS  EP+VL  R+P +LVNG 
Sbjct: 61  TEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGS 109


>gi|319827196|gb|ADV74815.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  221 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG++ IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDSPIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|61654901|gb|AAX48945.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654903|gb|AAX48946.1| topoisomerase IV subunit [Shigella dysenteriae]
 gi|61654905|gb|AAX48947.1| topoisomerase IV subunit [Shigella dysenteriae]
          Length = 121

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 61/122 (50%), Positives = 85/122 (69%), Gaps = 3/122 (2%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 121 DGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           D DP   AA RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG
Sbjct: 61  D-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNG 119

Query: 179 GG 180
             
Sbjct: 120 TT 121


>gi|319444107|gb|ADV58131.1| GyrA [Acinetobacter baumannii]
          Length = 102

 Score =  221 bits (563), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 65/102 (63%), Positives = 79/102 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH 
Sbjct: 1   IGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHE 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           LL DL KDTVD+  NYDGS + P VL  R PN+L+NG  GIA
Sbjct: 61  LLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIA 102


>gi|45738080|gb|AAS75837.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Kentucky]
          Length = 104

 Score =  221 bits (563), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 62/104 (59%), Positives = 79/104 (75%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 104


>gi|189910211|ref|YP_001961766.1| DNA topoisomerase subunit A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167774887|gb|ABZ93188.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
          Length = 456

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 113/512 (22%), Positives = 198/512 (38%), Gaps = 66/512 (12%)

Query: 12  EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            E+        D++ +    Y+  V   RAIP   DGLKPV RRIL+ M     +   ++
Sbjct: 3   NEEQYPKRPFEDQVNDDQRKYSRYVCDSRAIPQEIDGLKPVQRRILWAMW--NSDARNRH 60

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQD--WSLRLLLIEGQGNFGSVDGDPP-AAE 128
            K  +++G  MG YHPHG+ +I DAL++MAQD  ++    L+ G+G FG V      A+ 
Sbjct: 61  TKTVKVAGLAMG-YHPHGDRSIQDALSQMAQDFAFANNYPLVHGEGTFGDVLDPNAIASP 119

Query: 129 RYTECRLQKAAHFL-----LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
           RYTE +L   A  L     L D+     D+  NYD +  EP+    + P VL+N   GIA
Sbjct: 120 RYTEVKLSDFAKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPVVLLNNIQGIA 174

Query: 184 VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
            G    IP H L +V++  V  +         +    +G          G     +    
Sbjct: 175 TGFRCFIPAHKLSDVIESQVTYLKTGKP--KKITPWYKG---------YGGEVKLSKNDN 223

Query: 244 GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
           G   +        E        + + + P   N+  ++  + +L+ E++   + D  D S
Sbjct: 224 GNTVMSTTFGFKKEDGK-----LYLVDSPMNWNREKVVNYLDDLI-ERKDNWLKDYVDHS 277

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            +     +I  K    ++  + +L+  T   +      V  +  K   F    I+K F  
Sbjct: 278 SQTFKIELIAKKGEEPSEKEIKELF--TKENNEVLTINVITHEGKLRNFGPEEIIKRFCD 335

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
           FR+  ++RR K L    +++               E++R I         +    ++   
Sbjct: 336 FRKTHLIRRFKRLAGLEKEKI----------DRNSELIRFI---------KERWNEKVTG 376

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               K+  D +  + +                 +  + + R+T        + +     +
Sbjct: 377 IKSKKEFEDKLKAAKFVYF------------EWLSSIPVYRMTLEEVRKCEDAIVEAKTK 424

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
             E   +     +L G +  EL  +K + D  
Sbjct: 425 YTEYTTLQKDDKKLTGFMTDELDELKKKWDPK 456


>gi|319827190|gb|ADV74812.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|319827194|gb|ADV74814.1| DNA topoisomerase IV [Streptococcus agalactiae]
          Length = 116

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 59/116 (50%), Positives = 78/116 (67%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  + K + K A+  G VMG +HPHG+ +IYDA+ RM+QDW  R  LIE  GN
Sbjct: 1   LYSMNKDGNTFEKGFRKSAKSVGNVMGNFHPHGDFSIYDAMVRMSQDWKNRETLIEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            GS+DGDP AA RYTE RL + A +LL D+ K+TV F  N+D + +EP VL A +P
Sbjct: 61  NGSMDGDPAAAMRYTEARLSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFP 116


>gi|16754840|emb|CAD10663.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  221 bits (562), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|49354928|gb|AAT65186.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 101

 Score =  220 bits (561), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 64/101 (63%), Positives = 78/101 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            R+ K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  VRMTKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 101


>gi|124108785|gb|ABM90969.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 98

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 78/98 (79%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  SLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 98


>gi|16754842|emb|CAD10664.1| DNA gyrase [Salmonella typhi]
          Length = 104

 Score =  220 bits (560), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query: 52  VHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           VHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L+
Sbjct: 1   VHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLV 60

Query: 112 EGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DGQGNFGSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 104


>gi|10241565|emb|CAC09565.1| DNA gyrase subunit A [Parabacteroides distasonis]
          Length = 97

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 56/97 (57%), Positives = 80/97 (82%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           +I +EM+++Y+ Y+++VI+ RA+PD+RDG KPVHRRILFGM ++G   +K Y K ARI G
Sbjct: 1   NIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIVG 60

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           EV+GKYHPHG++++Y A+ RMAQ WS+R  L++GQGN
Sbjct: 61  EVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGN 97


>gi|168181190|ref|ZP_02615854.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
 gi|182667970|gb|EDT79949.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916]
          Length = 241

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 119/252 (47%), Gaps = 56/252 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
             T++G +++ ++S +  I + G  A+ L   DE++ V+     ++I++ T+ G C+RF 
Sbjct: 1   MCTRNGIIKKTEISKYSSIRKGGLNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRFN 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR + GV+ I+L K D+ +SM +V+  +                        
Sbjct: 61  EEDVRPM-GRVATGVKAITLRKTDKAVSMDVVIEDET----------------------- 96

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                         +L++SE GFGKRT   ++ I  R GKG+  
Sbjct: 97  ------------------------------LLSISENGFGKRTDIEEYPIHRRGGKGVIT 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             ++  ++ G +V    V ++D+++LV+     IR+ V+EI   SR   GV +  T+++E
Sbjct: 127 YKIT--DKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEISKTSRNAMGVKLMRTSEEE 184

Query: 890 RVVSVERIRESE 901
           ++V++ +I+  +
Sbjct: 185 KIVAIAKIKSED 196



 Score = 77.5 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 92/207 (44%), Gaps = 15/207 (7%)

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            +  G +K+  +S Y + R+GG   + + +R++D + D+ +   +  ++  +  G+  + 
Sbjct: 2   CTRNGIIKKTEISKYSSIRKGG--LNAINLREDDELIDVKMTKGNDEIIVVTQNGYCIRF 59

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
               +      A G   I +   ++   +  ++          +  ++  +++G  +R  
Sbjct: 60  NEEDVRPMGRVATGVKAITLRKTDKAVSMDVVI---------EDETLLSISENGFGKRTD 110

Query: 662 LSDFIQINRSGKIAMKLDSRDE---ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAG 718
           + ++    R GK  +     D+   I+      ++++++L       +R  +S I     
Sbjct: 111 IEEYPIHRRGGKGVITYKITDKTGPIVGARFVKEDDELMLVNSGDVAIRINVSEI-SKTS 169

Query: 719 RNSVGVRGISLAKGDQVISMAIVLHAD 745
           RN++GV+ +  ++ ++++++A +   D
Sbjct: 170 RNAMGVKLMRTSEEEKIVAIAKIKSED 196


>gi|52699667|gb|AAU86937.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 98

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 77/98 (78%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKPVHRR+LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + R+AQ +S+R 
Sbjct: 1   LKPVHRRVLFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYETIVRLAQPFSMRY 60

Query: 109 LLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           +L++GQGNFGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  MLVDGQGNFGSVDGDSAAAMRYTEVRMAKIAHELLADL 98


>gi|294661428|ref|YP_003579881.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
 gi|292660589|gb|ADE34837.1| DNA topoisomerase II medium subunit [Klebsiella phage KP15]
          Length = 428

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 119/491 (24%), Positives = 188/491 (38%), Gaps = 82/491 (16%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             SI D +Q   LT+A+  I  RAIP L DG KPVHR  +   MQ G      + K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAMQGG----TGFQKVASI 57

Query: 78  SGEV-MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           +G V M  YH HG  ++ +AL+ MA  W   + L +  G FGS     P A RY +C+L 
Sbjct: 58  AGGVAMYGYH-HGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIKCKLS 116

Query: 137 KA--AHFLLDDL-----GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
               A ++  DL       + V   P Y         L    P VLVNG  GIA   ATN
Sbjct: 117 PIFKAIYMDGDLTPVHEDPEHVP--PAY--------YLPI-IPMVLVNGFSGIAKAYATN 165

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+   VV+GC+A +++ D  LD      +G    T   I G   +            
Sbjct: 166 IPPHDPKSVVNGCIAYLNDKDFTLDLKYPYFKGE--ITDGTIYGTYEL------------ 211

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        + ++V+TEIP + ++   +  + +L  +  IV   DL  E     +R
Sbjct: 212 -----------QGKTKLVITEIPVKYDRVKYIAILDKLEEKGVIVSYKDLSKE----DFR 256

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK-PERFTLIGILKAFVAFREEV 368
             + LKR  +  +   ++ +   L    + N+  +   K         +LK FV  R  V
Sbjct: 257 YEVTLKREYANGLTREKILKDFGLIENSNPNINVIFEGKLYSYERPETLLKDFVDIRMNV 316

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             +R    + + ++                          +   A+   + +   + D  
Sbjct: 317 YQQRINKRIQETKEAL------------------------DKALAKVAFIAQMVESPDSL 352

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             +   +   +     G     E     ++ + +  LT   R  + +E   L  ++K   
Sbjct: 353 RGLSRSEAVKFVSTWIGC----ENHAEMLVAMNIYHLTTDERKKLEDEAEELRKQLKYWE 408

Query: 489 DILSSRSRLLG 499
           +       L  
Sbjct: 409 ETTPKIEYLND 419


>gi|24216892|ref|NP_714373.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45659166|ref|YP_003252.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|24198273|gb|AAN51391.1|AE011572_13 DNA gyrase subunit A [Leptospira interrogans serovar Lai str.
           56601]
 gi|45602412|gb|AAS71889.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 462

 Score =  218 bits (556), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 113/516 (21%), Positives = 203/516 (39%), Gaps = 68/516 (13%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+  + ++        D++ +    Y+  V   RAIP   DGLKPV RRIL+ M     +
Sbjct: 4   SNPPKSKESFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW--NSD 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNFGSVDGDP 124
              +Y K  +++G  MG YHPHG+ +I DAL++MAQD++    + L+ G+G FG V    
Sbjct: 62  ARNRYTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPS 120

Query: 125 P-AAERYTECRLQKAAHFL-----LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             A+ RYTE +L      L     L D+     D+  NYD +  EP+    + P VL+N 
Sbjct: 121 AIASPRYTEVKLSDFVKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPIVLLNN 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIA G    IP H L ++V   +  + +                 P      G   + 
Sbjct: 176 IQGIATGFRCFIPGHRLADIVKSQINYLKSKK----------PLSLKPWYKDFNGEVKMA 225

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
               TG  ++        E      + + +T+ P   N+  ++  + + + E++   + D
Sbjct: 226 ET-ETGNITMSTTFAFKWE-----GDTLYLTDSPMNWNREKVISLLDD-ILERKDSWLKD 278

Query: 299 LRDESDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
             D S +  +RV ++ K+G       +  L+    +Q+      V     K + F    I
Sbjct: 279 YVDYSSQT-FRVELQYKKGEKPSQKEIMALFNKEDVQT--LAMNVITYDGKLKNFKPEEI 335

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +K F  FR+  ++RR K  L+   +                   +I R S      + + 
Sbjct: 336 IKRFCDFRKTHLIRRFK-RLSGLEEE------------------KIERNSELIRFIKEKW 376

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            ++       KD  + +  S +                 +  + + R+T          +
Sbjct: 377 NEKVIGIKSKKDFEEKLKTSKFKYF------------EWLSTIPVYRMTIEEVKKCEEAI 424

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
                 +     ++    +L   +  EL  ++++ D
Sbjct: 425 VEAKTTLARYQGLVKEDKKLTEFMIIELEELQNKWD 460


>gi|1536962|emb|CAA69173.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 102

 Score =  218 bits (555), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/102 (57%), Positives = 80/102 (78%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G
Sbjct: 1   RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            GNFGS+DGD  AA+RYTE R+ K A  +L D+ K+TVDF  
Sbjct: 61  HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVD 102


>gi|195956954|gb|ACG59236.1| GyrA [Acinetobacter baumannii]
          Length = 104

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 64/100 (64%), Positives = 77/100 (77%)

Query: 86  HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD 145
           HPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL D
Sbjct: 5   HPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLAD 64

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           L KDTVD+  NYDGS + P VL  R PN+L+NG  GIAVG
Sbjct: 65  LEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVG 104


>gi|238652881|emb|CAX46372.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  218 bits (554), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 59/104 (56%), Positives = 79/104 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|33322684|gb|AAQ07076.1|AF496389_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 103

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 62/103 (60%), Positives = 80/103 (77%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI G+VMGKYHPHG+++IY A+A MAQD++ R +L++G GNFGSVDGD PAA RYTE 
Sbjct: 1   SARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDRPAAMRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           R+ K A  +L D+ K+TVD++ NYD +  EP VL AR PN+LV
Sbjct: 61  RMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLV 103


>gi|168480769|gb|ACA24478.1| DNA gyrase [Wolbachia endosymbiont of Romanomermis iyengari]
          Length = 107

 Score =  216 bits (551), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 63/103 (61%), Positives = 80/103 (77%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RAIPD+RDG KPVHRRIL+ M + G +  K Y K A I GEV+GKYHPHG+AA+YD++
Sbjct: 5   ISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPYKKAAGIVGEVIGKYHPHGDAAVYDSM 64

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            RMAQD++L +LL++G GNFGSV GDP A+ RYTE RLQ  + 
Sbjct: 65  VRMAQDFTLLILLVDGHGNFGSVGGDPAASMRYTEARLQGVSQ 107


>gi|217069467|gb|ACJ83222.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 186

 Score =  216 bits (551), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 104/187 (55%), Positives = 143/187 (76%), Gaps = 1/187 (0%)

Query: 146 LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
           + KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG + +
Sbjct: 1   IDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYL 60

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK   +++ 
Sbjct: 61  IDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK-RANKDI 119

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++++LN
Sbjct: 120 IVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSEIVLN 179

Query: 326 QLYRYTS 332
            L++ T+
Sbjct: 180 NLFKSTT 186


>gi|10241567|emb|CAC09567.1| DNA gyrase subunit A [Bacteroides vulgatus]
          Length = 98

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/98 (57%), Positives = 82/98 (83%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHR IL+GM+++G   +K Y K ARI 
Sbjct: 1   INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRSILYGMIELGNTSDKAYKKSARIV 60

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           GEV+GKYHPHG++++Y AL RMAQDW++R  L++GQGN
Sbjct: 61  GEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGN 98


>gi|171850797|emb|CAP11081.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 73/95 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
            LL++G GNFGSVDGD PAA RYTE ++ K +  L
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLEL 95


>gi|153873423|ref|ZP_02002012.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
 gi|152070113|gb|EDN67990.1| DNA gyrase, A subunit [Beggiatoa sp. PS]
          Length = 203

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 56/248 (22%)

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT +G V++  L +F +   +G IA+ LD  ++++SV+      D++L ++ G+ VRF 
Sbjct: 1   MATAYGTVKKTALINFSRPRSNGIIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
              +R   GR + GVRGI L   D+VIS+ I                             
Sbjct: 61  EEKVRSM-GRTARGVRGIRLMPNDKVISLIITR--------------------------- 92

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                     +   ILT +  GFGKRT   D+ +  R  KG+ A
Sbjct: 93  --------------------------EGGMILTATVNGFGKRTQIDDYPVKGRGIKGVIA 126

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              S  N  G +V    V D++ I+L+S++GTL+R PVN I + SR T+GV +    KDE
Sbjct: 127 IKTSDRN--GKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVISRNTQGVHLIRLKKDE 184

Query: 890 RVVSVERI 897
           ++V ++R+
Sbjct: 185 QLVGLDRL 192



 Score = 67.5 bits (163), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/200 (20%), Positives = 82/200 (41%), Gaps = 15/200 (7%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +  G VK+  L  +   R  G     + +   + +  + I   H  V+ FS  G   +  
Sbjct: 3   TAYGTVKKTALINFSRPRSNG--IIAIGLDKGNKLISVDITDGHRDVMLFSQDGKAVRFN 60

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
             ++      ARG   I ++  ++               +     ++ AT +G  +R ++
Sbjct: 61  EEKVRSMGRTARGVRGIRLMPNDK---------VISLIITREGGMILTATVNGFGKRTQI 111

Query: 663 SDFIQINRSGKIAMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
            D+    R  K  + + + D   +++       + DI+L +  G  VR P++ I V + R
Sbjct: 112 DDYPVKGRGIKGVIAIKTSDRNGKVVGAVQVEDDEDIVLISNRGTLVRTPVNGISVIS-R 170

Query: 720 NSVGVRGISLAKGDQVISMA 739
           N+ GV  I L K +Q++ + 
Sbjct: 171 NTQGVHLIRLKKDEQLVGLD 190


>gi|238652883|emb|CAX46373.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 104

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/104 (55%), Positives = 78/104 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
           VDGD PA  RYTE ++ K +  LL D+ K+TVDF+PN+D S +E
Sbjct: 61  VDGDSPAVMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLKE 104


>gi|238652843|emb|CAR63881.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  216 bits (549), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/103 (56%), Positives = 79/103 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+AA+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDAAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PA+ RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|217069469|gb|ACJ83223.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 183

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 105/184 (57%), Positives = 141/184 (76%), Gaps = 1/184 (0%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDG 60

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + +IDN +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK   
Sbjct: 61  LLYLIDNKESSLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK-RA 119

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           +++ IV+ E+PYQ NKA ++E+IA+L +EK+I  IA++RDESDR+G RVVIELKR A ++
Sbjct: 120 NKDIIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVVIELKRDAMSE 179

Query: 322 VILN 325
           ++LN
Sbjct: 180 IVLN 183


>gi|330721079|gb|EGG99218.1| DNA gyrase subunit A [gamma proteobacterium IMCC2047]
          Length = 225

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 78/242 (32%), Positives = 112/242 (46%), Gaps = 56/242 (23%)

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
             G V++  L +F +   SG IA+ LD  D +++V       DI+L +  G+C RF    
Sbjct: 4   ASGTVKKTSLMNFARPRSSGLIAVDLDGDDTLVNVAVTDGSQDIMLFSNAGKCARFAEED 63

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRGI L +G+++IS+ I                                
Sbjct: 64  VRPM-GRTARGVRGIRLKEGERLISLII-------------------------------- 90

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                  +   +L+VSE G+GKRT   DF   NR G+G+ A   
Sbjct: 91  ---------------------PQEGGRVLSVSENGYGKRTEMTDFPSHNRGGQGVIAMQT 129

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
           S+ N  G LV   PV D D+I+L+SDKGTL+R   + I I SR T+GV +   +K ER+V
Sbjct: 130 SERN--GELVGAVPVYDGDEIMLISDKGTLVRTRTDGISIVSRNTQGVSLIKVSKGERLV 187

Query: 893 SV 894
            V
Sbjct: 188 GV 189



 Score = 61.7 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/234 (18%), Positives = 93/234 (39%), Gaps = 15/234 (6%)

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
             G VK+  L  +   R  G     +    +D + ++ +      ++ FS+ G   +   
Sbjct: 4   ASGTVKKTSLMNFARPRSSGLIAVDLD--GDDTLVNVAVTDGSQDIMLFSNAGKCARFAE 61

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
             +      ARG   +  + L +GER+ +++             V+  +++G  +R +++
Sbjct: 62  EDVRPMGRTARG---VRGIRLKEGERLISLI------IPQEGGRVLSVSENGYGKRTEMT 112

Query: 664 DFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           DF   NR G+  + +       E++        ++I+L +  G  VR     I     RN
Sbjct: 113 DFPSHNRGGQGVIAMQTSERNGELVGAVPVYDGDEIMLISDKGTLVRTRTDGI-SIVSRN 171

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           + GV  I ++KG++++ +  +   + D    +       A     +G   E  S
Sbjct: 172 TQGVSLIKVSKGERLVGVERIEEPEEDEFAHLDEAGEAVAGVEADAGSDSEQES 225


>gi|3044112|gb|AAC13292.1| DNA gyrase subunit A [Moraxella catarrhalis]
          Length = 107

 Score =  215 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 62/106 (58%), Positives = 77/106 (72%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  A
Sbjct: 2   WNKPYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAA 61

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           A RYTE R+ K AH LL DL K+T     NYDG+ Q P V+  + P
Sbjct: 62  AMRYTEVRMAKLAHELLADLEKETGRLGANYDGTEQIPAVMPTKIP 107


>gi|29165271|gb|AAO65576.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Albany]
          Length = 101

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 61/101 (60%), Positives = 78/101 (77%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           S+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 101


>gi|238652839|emb|CAR63879.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 78/103 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PA+ RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPASMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|321268240|gb|ADW78928.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 106

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 60/106 (56%), Positives = 83/106 (78%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+GM  +G+     + K ARI GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQ
Sbjct: 1   RVLYGMYDLGITSKSAHKKSARIVGEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GNFGSVDGD PAA RYTE R++K +  ++ D+ K+TVDF+ N+D +
Sbjct: 61  GNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKETVDFQLNFDDN 106


>gi|217069493|gb|ACJ83235.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 182

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 107/183 (58%), Positives = 141/183 (77%), Gaps = 1/183 (0%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
           LL D+ KDTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG
Sbjct: 1   LLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDG 60

Query: 202 CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
            + ++D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK   
Sbjct: 61  LLYLLDHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEK-KS 119

Query: 262 DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
           +++ IV+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++
Sbjct: 120 NKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSE 179

Query: 322 VIL 324
           ++L
Sbjct: 180 IVL 182


>gi|238652845|emb|CAR63882.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  215 bits (547), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/103 (57%), Positives = 78/103 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHGN A+Y A+ RMAQD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGNTAVYYAMVRMAQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|116327081|ref|YP_796801.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116332262|ref|YP_801980.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119825|gb|ABJ77868.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125951|gb|ABJ77222.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 462

 Score =  215 bits (546), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 112/516 (21%), Positives = 201/516 (38%), Gaps = 68/516 (13%)

Query: 7   SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
           S+  + +         D++ +    Y+  V   RAIP   DGLKPV RRIL+ M     +
Sbjct: 4   SNPPKLKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW--NSD 61

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS--LRLLLIEGQGNFGSVDGDP 124
              +Y K  +++G  MG YHPHG+ +I DAL++MAQD++    + L+ G+G FG V    
Sbjct: 62  ARNRYTKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPS 120

Query: 125 P-AAERYTECRLQKAAHFL-----LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             A+ RYTE +L      L     L D+     D+  NYD +  EP+    + P VL+N 
Sbjct: 121 AIASPRYTEVKLSDFVKDLGFFESLPDI-----DYVKNYDETEDEPIHFVGKVPIVLLNN 175

Query: 179 GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
             GIA G    IP H L ++V   +  +                   P      G   + 
Sbjct: 176 IQGIATGFRCFIPGHRLADIVKSQINYLKTKK----------PLSLKPWYKDFNGEVKMA 225

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
               TG  ++        E      + + +T+ P   N+  ++  + + + E++   + +
Sbjct: 226 ET-ETGNITMSTTFAFKWE-----GDILYLTDSPMNWNREKVISLLDD-ILERKDSWLKE 278

Query: 299 LRDESDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
             D S +  +R+ ++ K+G       +  L+    +Q+      V     K + F    I
Sbjct: 279 YVDYSSQT-FRIELQYKKGEKPSQKEIMALFNKEDIQT--LAMNVITYDGKLKNFKPEEI 335

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           +K F  FR+  ++RR K  L+   +                   +I R S      + + 
Sbjct: 336 IKRFCDFRKTHLIRRFK-RLSGLEEE------------------KIERNSELIRFIKEKW 376

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            ++       KD  D +  S +                 +  + + R+T          +
Sbjct: 377 NEKVIGIKSKKDFEDKLKASKFKYF------------EWLSTIPVYRMTIEEVKKCEEAI 424

Query: 478 NSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
                 +     ++    +L   +  EL  ++++ D
Sbjct: 425 IEAKTTLARYQGLVKEDKKLTDYMITELNELQNKWD 460


>gi|313192242|emb|CBY05929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/102 (60%), Positives = 79/102 (77%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ Q
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNKQ 102


>gi|39980706|gb|AAR33047.1| gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 101

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 60/101 (59%), Positives = 77/101 (76%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQG
Sbjct: 1   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 101


>gi|29165281|gb|AAO65581.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Kottbus]
          Length = 100

 Score =  214 bits (545), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 61/100 (61%), Positives = 77/100 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|171850789|emb|CAP11077.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850791|emb|CAP11078.1| DNA gyrase subunit A [Clostridium difficile]
 gi|171850793|emb|CAP11079.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 95

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 57/95 (60%), Positives = 73/95 (76%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRRIL+ M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RMAQD+S R
Sbjct: 1   GLKPVHRRILYSMSELNLTPDKPYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
            LL++G GNFGSVDGD PAA RYTE ++ K +  L
Sbjct: 61  ALLVDGHGNFGSVDGDSPAAMRYTEAKMSKLSLEL 95


>gi|190589934|gb|ACE79226.1| DNA gyrase [Pseudomonas aeruginosa]
 gi|190589936|gb|ACE79227.1| DNA gyrase [Pseudomonas aeruginosa]
          Length = 98

 Score =  214 bits (544), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 76/98 (77%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ 
Sbjct: 1   VVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           K AH LL DL K+TVD+ PNYDG+ Q P V+  + PN+
Sbjct: 61  KLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNL 98


>gi|108711710|gb|ABF99505.1| DNA gyrase subunit A, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215765245|dbj|BAG86942.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 356

 Score =  213 bits (543), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 103/390 (26%), Positives = 177/390 (45%), Gaps = 63/390 (16%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVY 599
           + +S  GYVKR+  + +  Q RG  G+S   MR  D  +D  +  TH  VL+FS  G VY
Sbjct: 3   LILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVY 62

Query: 600 KEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRR 659
             + +++P  +  A G  L+ +LSL+ GERIT+I+P  E      + Y+V  T +G +++
Sbjct: 63  SARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFG---EDQYLVMLTVNGYIKK 119

Query: 660 NKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGR 719
             L+ F  I  SG I+++L   DE+  V  C  ++ + L ++ G  +    + +R   GR
Sbjct: 120 VPLNAFSAIRTSGIISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GR 178

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + GV  + L +GD++ SM I+     +  E    ++ +S                    
Sbjct: 179 KTRGVLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLSP------------------- 219

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                              ++L +++ G GKR     FR  N +  G++   +       
Sbjct: 220 ------------------PWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDC--- 258

Query: 840 ALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +L AVF V          ++Q++LVS  GT+ R+ V +I I SR+ +GV++       ++
Sbjct: 259 SLAAVFVVGFSLTDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKI 318

Query: 892 VSVERI-----------RESEIVDEAESTE 910
            S   I             + ++ EAE  E
Sbjct: 319 QSASLISAAEEEEEQDPESASLISEAEEPE 348



 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKG--IRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           +L +SEKG+ KR     F + NR   G  +    ++  N    +V       +D ++  S
Sbjct: 2   LLILSEKGYVKRMKPNTFNLQNRGTIGKSVGKMRMND-NTSDFIV----CQTHDHVLYFS 56

Query: 858 DKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIV 903
           DKG +      +I   +RA  G   V + S +  ER+ S+  + E    
Sbjct: 57  DKGIVYSARAYKIPECTRAATGTPLVQLLSLSDGERITSIVPVNEFGED 105



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 95/256 (37%), Gaps = 26/256 (10%)

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            +  +V ++  GY+K+VPL+ + A R  G     + +   D +  +        V   S 
Sbjct: 104 EDQYLVMLTVNGYIKKVPLNAFSAIRTSG--IISIQLAPGDELKWVRRCGDDDLVALASQ 161

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY------- 647
            G V      +L     + RG   +  + L +G+++ ++   P    +    Y       
Sbjct: 162 NGMVIVNTCNKLRALGRKTRG---VLAMKLKEGDKMASMDIIPATSHNMPETYSRVRDLS 218

Query: 648 ---VVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQEN 694
              ++F   +G  +R  L+ F     NR G    KL     + +V             + 
Sbjct: 219 PPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSLTDDGESDE 278

Query: 695 DILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICY 754
            ++L ++ G   R  +  I     R++ GV  + L    ++ S +++  A+ + ++    
Sbjct: 279 QVVLVSQSGTVNRIKVKDI-SIRSRSARGVILMRLEHAGKIQSASLISAAEEEEEQDPES 337

Query: 755 MKHMSAQRRLISGDTE 770
              +S        D E
Sbjct: 338 ASLISEAEEPEKQDPE 353


>gi|238652841|emb|CAR63880.1| DNA gyrase subunit A [Clostridium difficile]
          Length = 103

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 57/103 (55%), Positives = 77/103 (74%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++ +  +K Y K ARI G+V+GKYHPHG+ A+Y A+ RM QD+S R LL++G GNFGS
Sbjct: 1   MSELNLTPDKPYRKSARIVGDVLGKYHPHGDTAVYYAMVRMEQDFSTRALLVDGHGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           VDGD PAA RYTE ++ K +  LL D+ K+TVDF+PN+D S +
Sbjct: 61  VDGDSPAAMRYTEAKMSKLSLELLRDIEKETVDFKPNFDESLK 103


>gi|144225422|emb|CAM84042.1| DNA gyrase B [Legionella dresdenensis]
          Length = 100

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 60/100 (60%), Positives = 76/100 (76%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K AR+ G+V+GKYHPHG+ A+YD + RMAQ +S+R +L++GQGNFGSVDGD  AA RYT
Sbjct: 1   KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDMAAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           E R+ K AH LL DL K+TVDF PNYD +   P+VL +R 
Sbjct: 61  EVRMSKVAHALLADLEKETVDFTPNYDETEFAPIVLPSRV 100


>gi|29165273|gb|AAO65577.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Oranienburg]
          Length = 100

 Score =  213 bits (542), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 62/100 (62%), Positives = 77/100 (77%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 100


>gi|5739485|gb|AAD50498.1|AF174426_2 DNA topoisomerase IV ParC subunit [Acholeplasma laidlawii]
          Length = 123

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/123 (50%), Positives = 88/123 (71%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M++     D+  E+ I  V + D M + +  Y+  +I  RA+PD RDGLKPV RRIL+ M
Sbjct: 1   MSKIDKKLDKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            QMG+ +NK Y K ARI+GEVMGKYHPHG+++IY+A+ RM+QD+ +R+ L++  GN GS+
Sbjct: 61  GQMGLAFNKSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSI 120

Query: 121 DGD 123
           DGD
Sbjct: 121 DGD 123


>gi|260667425|gb|ACX47923.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 98

 Score =  212 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 62/98 (63%), Positives = 76/98 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 60

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            K AH LL DL KDTVD+  NYDGS + P VL  R PN
Sbjct: 61  TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPN 98


>gi|194354444|gb|ACF54720.1| gyrase A [Mycobacterium tuberculosis]
          Length = 156

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 81/156 (51%), Positives = 104/156 (66%), Gaps = 4/156 (2%)

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
           AA RYTE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVG
Sbjct: 1   AAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVG 60

Query: 186 MATNIPTHNLGEVVDGCVA----VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAY 241
           MATNIP HNL E+ D           + +  L A+M  ++GPDFPT  +I+G  G  +AY
Sbjct: 61  MATNIPPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAY 120

Query: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNK 277
            TGRGSI +RGV  +E+ S  R  +V+TE+PYQVN 
Sbjct: 121 KTGRGSIRMRGVVEVEEDSRGRTSLVITELPYQVNH 156


>gi|124108787|gb|ABM90970.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 74/93 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
            +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 61  YMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 93


>gi|313192284|emb|CBY05950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 60/103 (58%), Positives = 80/103 (77%), Gaps = 1/103 (0%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +    +G++WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNF
Sbjct: 5   YAC-VLGMDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNF 63

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG+
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGN 106


>gi|17932925|emb|CAC84235.1| gyrase A [Stenotrophomonas maltophilia]
          Length = 100

 Score =  212 bits (539), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 74/99 (74%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +    NK Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           D  AA RYTE R+ + AH L+ D+ K+TVDF+PNYD   
Sbjct: 61  DSAAAMRYTEARMSRLAHELMADIDKETVDFQPNYDEKE 99


>gi|304373560|ref|YP_003858305.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
 gi|299829516|gb|ADJ55309.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB16]
          Length = 428

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 117/491 (23%), Positives = 187/491 (38%), Gaps = 82/491 (16%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             SI D +Q   LT+A+  I  RAIP L DG KPVHR  +    + G      + K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFIHSAAKGG----TGFQKVASI 57

Query: 78  SGEV-MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           +G V M  YH HG  ++ +AL+ MA  W   + L E  G FGS     P A RY +C+L 
Sbjct: 58  AGGVAMYGYH-HGETSVEEALSLMAAHWCNNIPLFERDGFFGSRLVKKPGAPRYIKCKLS 116

Query: 137 KA--AHFLLDDL-----GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
               A ++ +DL       + V   P Y         L    P VLVNG  GIA   ATN
Sbjct: 117 PLFKAIYMDEDLTLPHEDPEHVP--PAY--------YLPI-IPMVLVNGFSGIAKAYATN 165

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           IP H+   V++GCV+ ++  D  LD      +G                        +  
Sbjct: 166 IPPHDPVSVLNGCVSYLNGKDFTLDLKYPHFKGD---------------------IENGT 204

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + G   +      + ++V+TEIP + ++   +  + +L  +  IV   DL  E     +R
Sbjct: 205 MYGKYEL----QGKTKLVITEIPVKYDRVKYISILDKLEEKGYIVSYKDLSKE----DFR 256

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEV 368
             I LKR  +  +   ++ +   L    + N+  +   K         +LK FV  R  V
Sbjct: 257 YEITLKREYANGLTREKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRIGV 316

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
             +R    + + ++                          +   A+ + + +     D  
Sbjct: 317 YQQRIDKRIQETKEAL------------------------DKALAKVDFIDQMIAQPDAL 352

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
             +   +         G     E     ++ + +  LT   R  + +E N L  ++K   
Sbjct: 353 KGLSRSEAVKLVSTWAGC----ENHAEILVAMNIYHLTTDERQKLEDEANELRKQLKYWE 408

Query: 489 DILSSRSRLLG 499
           +       L  
Sbjct: 409 ETTPKTEYLND 419


>gi|13508941|emb|CAC11123.2| DNA gyrase subunit A [Bacteroides ovatus]
          Length = 92

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           YHPHG++++Y A+ RMAQ+W++R  L++GQGN
Sbjct: 61  YHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGN 92


>gi|226327145|ref|ZP_03802663.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
 gi|225204363|gb|EEG86717.1| hypothetical protein PROPEN_01010 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  211 bits (537), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 100 MAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           MAQ +S R  LI+GQGN+G+ D DP   AA RYTE RL K +  LL +LG  TVD+ PN+
Sbjct: 1   MAQPFSYRYPLIDGQGNWGAPD-DPKSFAAMRYTESRLSKYSQTLLSELGHGTVDWIPNF 59

Query: 158 DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           DG+ QEP +L AR PN+++NG  GIAVGMAT+IP HN  E+    V ++DNPD  L  +M
Sbjct: 60  DGTMQEPKMLPARLPNIVLNGTTGIAVGMATDIPPHNAREIGQALVMLLDNPDAGLSDVM 119

Query: 218 EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
           + ++GPD+PT A I+      +        +V+R    
Sbjct: 120 QYVQGPDYPTEAEIITAQ---DDIKKSIKRVVVRSECE 154


>gi|217069479|gb|ACJ83228.1| DNA gyrase subunit A [Campylobacter lari]
          Length = 185

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 103/186 (55%), Positives = 144/186 (77%), Gaps = 1/186 (0%)

Query: 149 DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           DTVDF PNYD S  EP VL AR PN+L+NG  GIAVGMATNIP H+L E++DG + +IDN
Sbjct: 1   DTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYIIDN 60

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            +  L+ +M+ I+GPDFPTG +I G+ GI  AY TGRG + +R  +HIEK   +++ IV+
Sbjct: 61  KEASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK-RANKDIIVI 119

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+PYQ NKA ++E+IA+LV+EK+I  I+++RDESDR+G RVVIELKR A ++++LN L+
Sbjct: 120 DELPYQTNKARLIEQIADLVKEKQIEGISEIRDESDREGIRVVIELKREAMSEIVLNNLF 179

Query: 329 RYTSLQ 334
           + T+++
Sbjct: 180 KSTAME 185


>gi|2281046|emb|CAB10849.1| DNA Gyrase subunit A [Mycoplasma hominis]
          Length = 90

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 74/90 (82%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + RA+PD RDGLKPVHRRIL+GM ++G+ +   + K ARI G+V+GKYHPHG++++Y+A+
Sbjct: 1   VSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSARIVGDVLGKYHPHGDSSVYEAM 60

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            RMAQD+SLR  LI+G GNFGSVDGD  AA
Sbjct: 61  VRMAQDFSLRYPLIDGHGNFGSVDGDEAAA 90


>gi|29165298|gb|AAO65582.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Hadar]
          Length = 99

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 77/97 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDG 159
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 99


>gi|11761920|gb|AAG40243.1|AF303622_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761924|gb|AAG40245.1|AF303624_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761926|gb|AAG40246.1|AF303625_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761928|gb|AAG40247.1|AF303626_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761930|gb|AAG40248.1|AF303627_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761932|gb|AAG40249.1|AF303628_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761934|gb|AAG40250.1|AF303629_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761938|gb|AAG40252.1|AF303631_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761940|gb|AAG40253.1|AF303632_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761942|gb|AAG40254.1|AF303633_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761946|gb|AAG40256.1|AF303635_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761948|gb|AAG40257.1|AF303636_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761950|gb|AAG40258.1|AF303637_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761952|gb|AAG40259.1|AF303638_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761958|gb|AAG40262.1|AF303641_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761960|gb|AAG40263.1|AF303642_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761970|gb|AAG40268.1|AF303647_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|11761982|gb|AAG40274.1|AF303653_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp. ozaenae]
 gi|11761984|gb|AAG40275.1|AF303654_1 topoisomerase IV subunit C [Klebsiella pneumoniae subsp.
           rhinoscleromatis]
          Length = 106

 Score =  211 bits (536), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 60  YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|313192250|emb|CBY05933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/99 (61%), Positives = 76/99 (76%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG  
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGKT 102


>gi|301166553|emb|CBW26129.1| putative DNA gyrase subunit A [Bacteriovorax marinus SJ]
          Length = 480

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 116/500 (23%), Positives = 206/500 (41%), Gaps = 64/500 (12%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            S+ + D ++  Y TY I  ++ RAIP L+DGLKP  RRILF + +     +K  +K + 
Sbjct: 10  ESIPLEDIVREEYRTYQIYTLMDRAIPYLKDGLKPGQRRILFTLWK---NQSKGLMKVSS 66

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQD--WSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
            +G V+   HPHG A++  A+  MAQD  +S    LI+ +G FG      PAA RY EC+
Sbjct: 67  ATGLVL-TLHPHGPASVESAIVNMAQDYTFSNNYPLIDKKGYFGERMETSPAASRYIECK 125

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L K +  LL D   D V+  PNYD    EPV L  + P +L+NG  GI  G ++ IP+ +
Sbjct: 126 LGKISQILLFD-DMDQVEMVPNYDEKVMEPVNLLPKLPLMLLNGAEGIGTGFSSVIPSFS 184

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             EV++  ++ +++       L     G + P      G    +  +  G   +      
Sbjct: 185 HKEVINSMISFLESGKA--KKLKPFSNGFNLPIERDQRG----RLIFNMGFEEV------ 232

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                     +I + E+P   +   + + + + +    I D  D   ++D     V IEL
Sbjct: 233 --------DGKIYINELPRGYDAQKIYKYLTKYIEADFIKDFVDSTVDND-----VRIEL 279

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFT-LIGILKAFVAFREEVVVRRT 373
                A+  L ++ +     S    N   ++      F     I++ F   R  VV RR 
Sbjct: 280 IFKRGAEKSLEEVEKEMGTASTQVPNYTLISERGVRIFDKPEEIIEIFSGQRLAVVKRRY 339

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
           +      +D+              +E+++ I         +++  + +  + + K  ++ 
Sbjct: 340 ELRCQGLKDKI----------QQNNEIIKFI---------KKKEYEVATKSKNRKSFVEY 380

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
           +    +              +  + ++ + R+T          +      + E   I  S
Sbjct: 381 LTKKKFVY------------SDYLADMPIYRMTKEEVAKRALMVKDDTKLLAEYTKIAKS 428

Query: 494 RSRLLGIIKQELLSVKDELD 513
              +   + +EL  V D+L 
Sbjct: 429 DKLIKKKLIEELKDVGDQLT 448


>gi|15593976|emb|CAC11124.2| DNA gyrase subunit A [Bacteroides thetaiotaomicron]
          Length = 92

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 78/92 (84%)

Query: 25  MQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK 84
           M++SY+ Y+++VI+ RA+PD+RDG KPVHRRIL+GMM++G   +K Y K ARI GEV+GK
Sbjct: 1   MKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKPYKKSARIVGEVLGK 60

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           YHPHG++++Y A+ RMAQ+W++R  L++GQGN
Sbjct: 61  YHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGN 92


>gi|11761922|gb|AAG40244.1|AF303623_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761944|gb|AAG40255.1|AF303634_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761976|gb|AAG40271.1|AF303650_1 topoisomerase IV subunit C [Raoultella planticola]
 gi|11761978|gb|AAG40272.1|AF303651_1 topoisomerase IV subunit C [Raoultella terrigena]
 gi|11761980|gb|AAG40273.1|AF303652_1 topoisomerase IV subunit C [Raoultella ornithinolytica]
 gi|11761986|gb|AAG40276.1|AF303655_1 topoisomerase IV subunit C [Raoultella planticola]
          Length = 106

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 60  YTESRLSKYAELLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILL 106


>gi|313192286|emb|CBY05951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 106

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 61/103 (59%), Positives = 79/103 (76%), Gaps = 1/103 (0%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   ++G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 5   YA-SRIGHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF 63

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 106


>gi|124108797|gb|ABM90975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108801|gb|ABM90977.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  210 bits (535), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 74/93 (79%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|254047463|gb|ACT63871.1| DNA gyrase subunit A [Escherichia coli]
          Length = 100

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 75/100 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  + P
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIP 100


>gi|259089989|gb|ACV91835.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 98

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 58/98 (59%), Positives = 76/98 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  +
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 98


>gi|83596418|gb|ABC25548.1| GyrA [Streptococcus pneumoniae]
          Length = 97

 Score =  210 bits (534), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 77/97 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE R+ K A
Sbjct: 1   DVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIA 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
             +L D+ K+TVDF  NYD + +EP+VL AR+PN+LV
Sbjct: 61  LEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLV 97


>gi|93278246|gb|ABF06588.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGSVDGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|11761962|gb|AAG40264.1|AF303643_1 topoisomerase IV subunit C [Klebsiella oxytoca]
 gi|4469257|emb|CAB38319.1| topoisomerase IV [Klebsiella oxytoca]
          Length = 106

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 58/107 (54%), Positives = 78/107 (72%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE RL K A  LL +LG+ TVD+ PN+DG+ QEP ++ AR PN+L+
Sbjct: 60  YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMMPARLPNILL 106


>gi|161598227|gb|ABX74934.1| gyrase subunit A [Ureaplasma urealyticum]
          Length = 99

 Score =  209 bits (532), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/99 (56%), Positives = 73/99 (73%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  +K Y K AR  G+V+GKYHPHG+ A+Y  + RMAQ++S+R LL++G GNFGS+DGD 
Sbjct: 1   MTHDKPYKKSARWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE 163
            AA RYTE RL K ++ LL  + K+TVDF PNYD S QE
Sbjct: 61  AAAMRYTEARLSKISYELLKYIDKETVDFVPNYDASEQE 99


>gi|12642570|gb|AAK00288.1|AF302140_1 GyrA [Stenotrophomonas maltophilia]
          Length = 97

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 73/97 (75%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+LF M ++    NK Y K ARI G+V+GKYHPHG+ ++YD L R+AQ +SLR +L++G
Sbjct: 1   RRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
           QGNFGS+DGD  AA RYTE R+ + AH L+ D+ K+T
Sbjct: 61  QGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKET 97


>gi|168997711|gb|ACA42553.1| DNA gyrase subunit A [Escherichia coli]
          Length = 89

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 73/89 (82%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           PD+RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ
Sbjct: 1   PDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            +SLR +L++GQGNFGS+DGD  AA RYT
Sbjct: 61  PFSLRYMLVDGQGNFGSIDGDSAAAMRYT 89


>gi|321268206|gb|ADW78911.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDTSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|558547|emb|CAA57655.1| DNA Gyrase A subunit [Acinetobacter baumannii]
 gi|197725597|gb|ACH73007.1| DNA gyrase subunit A [Acinetobacter baumannii]
          Length = 95

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 60/95 (63%), Positives = 74/95 (77%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R+ K
Sbjct: 1   VGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
            AH LL DL KDTVD+  NYDGS + P VL  R P
Sbjct: 61  LAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVP 95


>gi|91093519|gb|ABE11581.1| ParC [Escherichia coli]
 gi|91093593|gb|ABE11592.1| ParC [Escherichia coli]
          Length = 108

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 77/109 (70%), Gaps = 3/109 (2%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKD 149
            +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ 
Sbjct: 61  PFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQG 108


>gi|93278234|gb|ABF06582.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278238|gb|ABF06584.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 72/98 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|213618945|ref|ZP_03372771.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 288

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 138/288 (47%), Positives = 187/288 (64%), Gaps = 9/288 (3%)

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDRE 264
           IDN DI ++ LME I GPDFPT A+I GR GI+ AY TGRG + IR  + +E      RE
Sbjct: 1   IDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRE 60

Query: 265 QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+ G R+VIE+KR A  +V+L
Sbjct: 61  TIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVL 120

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R EVV RRT + L KARDRA
Sbjct: 121 NNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRA 180

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG-- 442
           H+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++  +++   D +      
Sbjct: 181 HILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWL 240

Query: 443 ------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                  DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I
Sbjct: 241 EPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 288


>gi|32453746|ref|NP_861955.1| DNA topisomerase II medium subunit [Enterobacteria phage RB69]
 gi|32350565|gb|AAP76164.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage RB69]
          Length = 441

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 103/431 (23%), Positives = 176/431 (40%), Gaps = 46/431 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + S ++   + N  L YA+  +  RAIP++ DG KPV R ++   + +     +K+ K 
Sbjct: 2   QLNSRNLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVHRALDLARGNKEKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG ++  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGESSAQDAGALMANTWNNNYPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K       ++ KDT ++ P ++     P    L    P VL+NG  GIA G ATNI
Sbjct: 120 ARVSK----NFYNVYKDT-EYAPAHEDKEHIPPKFYLPI-IPTVLLNGVSGIATGYATNI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV-ILGRTGIKNAYATGRGSIV 249
             H+   V    +  +   ++        +  P+F      + GR  I   Y        
Sbjct: 174 LPHSFKSVKKAVLQALQGKNVTKPK----VEFPEFRGEVHEVDGRYEIHGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + K+ + + +K    +    D+    G+ 
Sbjct: 224 -----------TSRTQMQITEIPYKFDRETYVSKVLDPLEDK---GLISWEDDCGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVA 363
             ++ ++        ++   ++ +  SL    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYSLPDDEELRHEKIMKDFSLIERRSQNITVINEKGKLAVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV-RIIRFSPNPETARRELMQRSW 422
            R+  V +R               +  A A      +   I+      +    EL Q   
Sbjct: 330 VRKTYVQKRI--DNKILESEKAFKLAFAKAHFIKKVISGEIVIQGKTRKALTEELAQIEM 387

Query: 423 NASDIKDLIDL 433
               +  L+ L
Sbjct: 388 YKEHVDKLVGL 398


>gi|11761966|gb|AAG40266.1|AF303645_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
          Length = 106

 Score =  208 bits (530), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPHG++A Y A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYKAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 60  YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|93278230|gb|ABF06580.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278242|gb|ABF06586.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQG
Sbjct: 1   ILYAMHDLSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|11761936|gb|AAG40251.1|AF303630_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761954|gb|AAG40260.1|AF303639_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761964|gb|AAG40265.1|AF303644_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761968|gb|AAG40267.1|AF303646_1 topoisomerase IV subunit C [Klebsiella pneumoniae]
 gi|11761972|gb|AAG40269.1|AF303648_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 60  YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|11761956|gb|AAG40261.1|AF303640_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  208 bits (529), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE RL K A  LL +LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 60  YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILL 106


>gi|124108795|gb|ABM90974.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 73/93 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|313192252|emb|CBY05934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 60/99 (60%), Positives = 77/99 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGEYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG+ 
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGNM 102


>gi|69250184|ref|ZP_00605120.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
 gi|68193992|gb|EAN08552.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium DO]
          Length = 193

 Score =  207 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 88/193 (45%), Positives = 124/193 (64%), Gaps = 7/193 (3%)

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            RYTE RL K +  LL +LG+ T D+ PN+DG+ QEP +L AR PN+L+NG  GIAVGMA
Sbjct: 1   MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 60

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPT-GAVILGRTGIKNAYATGRG 246
           T+IP HNL EV    +A+ID P   LD L++I++GPD+PT   +I  R  I+  Y  GRG
Sbjct: 61  TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 120

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           S+ +R V   E        +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +
Sbjct: 121 SVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 175

Query: 307 G-YRVVIELKRGA 318
              R+VI  +   
Sbjct: 176 NPTRLVIVPRSNR 188


>gi|93278248|gb|ABF06589.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 98

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +S+R  L++GQG
Sbjct: 1   ILYAMHDLNLTSKVAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSMRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGSVDGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSVDGDSAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|224458678|gb|ACN43202.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 269

 Score =  207 bits (527), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 138/295 (46%), Positives = 188/295 (63%), Gaps = 26/295 (8%)

Query: 204 AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           AV +N DI +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +
Sbjct: 1   AVSENKDITIQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGK 60

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VI
Sbjct: 61  ERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVI 120

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT Y L KA  R
Sbjct: 121 LNNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEAR 180

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL IA+ +LD V+ +IR S   E AR  L+++                       
Sbjct: 181 AHILEGLRIALDHLDAVISLIRSSQTAEIARTGLIEQ----------------------- 217

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L
Sbjct: 218 ---FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVL 269


>gi|28629432|gb|AAO32079.1| topoisomerase IV [Acinetobacter genomosp. 3]
          Length = 109

 Score =  207 bits (527), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 54/110 (49%), Positives = 77/110 (70%), Gaps = 3/110 (2%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           LIEGQGN+GS D DP   AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 61  LIEGQGNWGSPD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|124108773|gb|ABM90963.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108775|gb|ABM90964.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108777|gb|ABM90965.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108779|gb|ABM90966.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108781|gb|ABM90967.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108783|gb|ABM90968.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 73/93 (78%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           L++GQGNFGS+DGD  AA RYTE RL K AH L
Sbjct: 61  LVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHGL 93


>gi|93278232|gb|ABF06581.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|93278240|gb|ABF06585.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 71/98 (72%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQG
Sbjct: 1   ILYAMHDLSINSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|46019110|emb|CAE52019.1| gyrase subunit A [Bacillus amyloliquefaciens]
          Length = 159

 Score =  207 bits (526), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 98/159 (61%), Positives = 127/159 (79%)

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGC 202
           L D+ KDT+D++ NYDGS +EP V+ +R+PN+LVNG  GIAVGMATNIP H LGEV++G 
Sbjct: 1   LRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGV 60

Query: 203 VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGD 262
           +AV +NP+I +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  
Sbjct: 61  LAVSENPEITIQELMEYIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSG 120

Query: 263 REQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
           +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRD
Sbjct: 121 KERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRD 159


>gi|321268228|gb|ADW78922.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268230|gb|ADW78923.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           GEV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K 
Sbjct: 1   GEVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKI 60

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
           +  ++ D+ K+TVDF+ N+D +  EP V+  + P +L+N
Sbjct: 61  SEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLIN 99


>gi|28629434|gb|AAO32080.1| topoisomerase IV [Acinetobacter genomosp. 13]
          Length = 109

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 54/110 (49%), Positives = 77/110 (70%), Gaps = 3/110 (2%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRI++ M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  
Sbjct: 1   KPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYP 60

Query: 110 LIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           LIEGQGN+GS D DP   AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 61  LIEGQGNWGSPD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 109


>gi|321268214|gb|ADW78915.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268216|gb|ADW78916.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268218|gb|ADW78917.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268222|gb|ADW78919.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
 gi|321268226|gb|ADW78921.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 99

 Score =  206 bits (525), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|260890949|ref|ZP_05902212.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
 gi|260859502|gb|EEX74002.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254]
          Length = 196

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 67/246 (27%), Positives = 117/246 (47%), Gaps = 53/246 (21%)

Query: 664 DFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            F  I ++GK A+KL+  DE++ +   +   E+++   T+ G  +RF    +R   G  +
Sbjct: 1   MFDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSM-GTGA 59

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GV+GI+L   D+++  AI+                                        
Sbjct: 60  AGVKGITLRDKDKIVGAAIIN--------------------------------------- 80

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                     E+   E  ILT++E+G+GKRT   ++R+++R GKGI    ++  ++ G +
Sbjct: 81  ---------SEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKGIINAKLN--DKTGKI 129

Query: 842 VAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           V V  V +ND+I+L++ +GTLIR  VN + +  R+  GV I     +E++ SV +I E  
Sbjct: 130 VDVKIVTENDEIMLITSEGTLIRTSVNNVSVIGRSASGVRIMKVRNNEKIASVVKITEEP 189

Query: 902 IVDEAE 907
            + E E
Sbjct: 190 ELSEDE 195



 Score = 68.3 bits (165), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 84/201 (41%), Gaps = 8/201 (3%)

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
           ++   ++ GK    +   DE     L   ++   V   +  G   +     +        
Sbjct: 1   MFDNIKKAGKRAIKLNDDDEVMYIGLTSGTSEDEVFAATRNGIAIRFSEKDVRSM---GT 57

Query: 615 GKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKI 674
           G A +  ++L   ++I         E + + + ++  T+ G  +R KLS++   +R GK 
Sbjct: 58  GAAGVKGITLRDKDKIVGA-AIINSEMNNDEMRILTITEEGYGKRTKLSEYRLTSRGGKG 116

Query: 675 AMKLDSRD---EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK 731
            +     D   +I+ V+  T+ ++I+L T  G  +R  ++ +    GR++ GVR + +  
Sbjct: 117 IINAKLNDKTGKIVDVKIVTENDEIMLITSEGTLIRTSVNNV-SVIGRSASGVRIMKVRN 175

Query: 732 GDQVISMAIVLHADADYDERI 752
            +++ S+  +       ++  
Sbjct: 176 NEKIASVVKITEEPELSEDEQ 196


>gi|91093517|gb|ABE11580.1| ParC [Escherichia coli]
 gi|91093521|gb|ABE11582.1| ParC [Escherichia coli]
 gi|91093523|gb|ABE11583.1| ParC [Escherichia coli]
 gi|91093527|gb|ABE11585.1| ParC [Escherichia coli]
 gi|91093531|gb|ABE11587.1| ParC [Escherichia coli]
 gi|91093551|gb|ABE11590.1| ParC [Escherichia coli]
 gi|91093585|gb|ABE11591.1| ParC [Escherichia coli]
 gi|91093595|gb|ABE11593.1| ParC [Escherichia coli]
          Length = 108

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 76/109 (69%), Gaps = 3/109 (2%)

Query: 43  PDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
           P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ
Sbjct: 1   PFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQ 60

Query: 103 DWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKD 149
            +S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ 
Sbjct: 61  PFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQG 108


>gi|93278236|gb|ABF06583.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 98

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/98 (56%), Positives = 72/98 (73%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M  + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQG
Sbjct: 1   ILYAMHDLSINSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQG 60

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           NFGS+DGD  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  NFGSIDGDNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 98


>gi|321268212|gb|ADW78914.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|255741569|gb|ACU32445.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 97

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 74/97 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|313192256|emb|CBY05936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 60/99 (60%), Positives = 76/99 (76%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 5   GHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGD 64

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
             AA RYTE RL K AH L+ DL K+TVDF  NYDG  +
Sbjct: 65  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGKNK 103


>gi|4566382|gb|AAD23325.1| DNA gyrase subunit A [Streptococcus oralis ATCC 35037]
 gi|4566384|gb|AAD23326.1| DNA gyrase subunit A [Streptococcus oralis]
 gi|4566390|gb|AAD23329.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566392|gb|AAD23330.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566394|gb|AAD23331.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566398|gb|AAD23333.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566400|gb|AAD23334.1| DNA gyrase subunit A [Streptococcus mitis]
 gi|4566402|gb|AAD23335.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 75/96 (78%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|66391455|ref|YP_238980.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
 gi|62288543|gb|AAX78526.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB43]
          Length = 387

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 165/386 (42%), Gaps = 44/386 (11%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             SI D +Q   LT+A+  I  RAIP L DG KPVHR  +    + G      + K A I
Sbjct: 2   ERSIKDVVQVEGLTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKGG----SGFQKVASI 57

Query: 78  SGEV-MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           +G V +  YH HG  ++ +AL+ MA  W   + L +  G FGS     P A RY  C+L 
Sbjct: 58  AGGVAIYGYH-HGETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKPGAPRYIYCKLS 116

Query: 137 KA--AHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
               A ++ +DL        P+ D     P       P VLVNG  GIA G ATNIP H+
Sbjct: 117 PLFKAIYMDEDLT------IPHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHD 170

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              V++GCV+ ++  D  LD      +G              I +    G+  +      
Sbjct: 171 PVSVLNGCVSYLNGKDFTLDLKYPQFKG-------------DIVDGTMYGKYEL------ 211

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
                   + ++V+TEIP + ++   +  + +L  +  IV   DL  E     +R  I L
Sbjct: 212 ------QGKTKLVITEIPVKYDRVKYIAILDKLEEKGCIVSYKDLSKE----DFRYEITL 261

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAFREEVVVRRT 373
           KR  +  +   ++ +   L    + N+  +   K         +LK FV  R  V  +R 
Sbjct: 262 KREYANGLTHEKILKDFGLIENSNPNINVIFNGKLHSYERPETLLKDFVDIRMTVYQQRI 321

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDE 399
           +  + +A++     +     +  + E
Sbjct: 322 EKRIQEAKEALARALAKVEFIDQMIE 347


>gi|312192221|gb|ADQ43807.1| topoisomerase IV subunit A [Aerococcus urinae]
          Length = 97

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 51/97 (52%), Positives = 68/97 (70%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD+RDGLKPV RRIL+ M   G   +  + K A+  G V+G YHPHG++++Y+A+ RM+
Sbjct: 1   LPDIRDGLKPVQRRILYAMYHDGNTSDHAFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMS 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
           Q W  R+ LI+  GN GS+DGDP AA RYTE RL K 
Sbjct: 61  QAWKNRMPLIDMHGNNGSMDGDPAAAMRYTEARLSKL 97


>gi|321268224|gb|ADW78920.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 101

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 79/99 (79%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           EV+GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +
Sbjct: 1   EVLGKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKIS 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
             ++ D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  EEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 99


>gi|10241569|emb|CAC09566.1| DNA gyrase subunit A [Bacteroides uniformis]
          Length = 93

 Score =  205 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 78/93 (83%)

Query: 24  EMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG 83
           EM++SY+ Y+++VI+ RA+PD+++G KPVHRRILFGMM +G   +K Y K AR+ GEV+G
Sbjct: 1   EMKSSYIDYSMSVIVSRALPDVKNGFKPVHRRILFGMMGLGNTSDKPYKKSARVVGEVLG 60

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           KYHPHG++++Y AL RMAQ W++R +L++GQGN
Sbjct: 61  KYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGN 93


>gi|255742424|gb|ACU32466.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  205 bits (522), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/96 (60%), Positives = 74/96 (77%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|42718131|gb|AAS38489.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718133|gb|AAS38490.1| DNA gyrase A subunit [Haemophilus influenzae]
 gi|42718135|gb|AAS38491.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 62/99 (62%), Positives = 76/99 (76%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NKKYVK AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD P
Sbjct: 1   TANKKYVKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAP 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           AA RYTE R+QK    LL DL K+TV+F PNYDG    P
Sbjct: 61  AAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|313192238|emb|CBY05927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
 gi|313192246|emb|CBY05931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDN 96


>gi|42718129|gb|AAS38488.1| DNA gyrase A subunit [Haemophilus influenzae]
          Length = 100

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 61/99 (61%), Positives = 77/99 (77%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             NKKYVK AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD P
Sbjct: 1   TANKKYVKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAP 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           AA RYTE R+QK    LL DL K+TV+F PNYDG    P
Sbjct: 61  AAMRYTEVRMQKITQALLTDLDKETVNFSPNYDGELMIP 99


>gi|313192276|emb|CBY05946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 60/98 (61%), Positives = 76/98 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G++WNK Y K AR+ G+V G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 10  LGMDWNKAYKKSARVVGDVFGEYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 69

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           D  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 70  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 107


>gi|218679283|ref|ZP_03527180.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 316

 Score =  205 bits (520), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 219/316 (69%), Positives = 261/316 (82%)

Query: 343 ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
           ALNG KPE+  L+ +L+AFV+FREEVV RRTK+LL KARDRAHVLVGLAIAVAN+DEV+R
Sbjct: 1   ALNGGKPEQLALLDMLRAFVSFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIR 60

Query: 403 IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
           +IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q RAILELRL
Sbjct: 61  VIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDLTYNLSEEQARAILELRL 120

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
           ARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K EL++V+DE  TPRRT IV+
Sbjct: 121 ARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVD 180

Query: 523 GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
           G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+  RDEDFV+ LF+
Sbjct: 181 GGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFV 240

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
           V+THT VLFFSS G VYKEKVWRLPIG+P +RGKALIN+L L  GERITTI+P PEDE+S
Sbjct: 241 VNTHTPVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDEAS 300

Query: 643 WNNLYVVFATKHGNVR 658
           W+NL V+F+T  G VR
Sbjct: 301 WDNLDVMFSTTRGTVR 316



 Score = 69.4 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     +    +       +       + +     E   +
Sbjct: 132 GDEL---NKIGEEIKDYLDILSSRVRIQTIVKDELIAVRDEFGTPRRTEIVDGGLEMDDE 188

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           +L  +E  ++TVS  G+ KR     +R   R GKG         + +  L   F VN + 
Sbjct: 189 DLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRL---FVVNTHT 245

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFS---TAKDERVVSVERIRESE 901
            ++  S +G + +  V  + I +  ++G  + +       ER+ ++  + E E
Sbjct: 246 PVLFFSSRGIVYKEKVWRLPIGTPTSRGKALINMLPLEPGERITTILPLPEDE 298


>gi|60686900|gb|AAX35540.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 97

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQG
Sbjct: 2   VLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYHTIVRMAQPFSLRYMLVDGQG 61

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           NFGS+DGD  AA RYTE RL K AH L+ DL K+TV
Sbjct: 62  NFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETV 97


>gi|91093529|gb|ABE11586.1| ParC [Escherichia coli]
          Length = 107

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 75/107 (70%), Gaps = 3/107 (2%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +
Sbjct: 2   IGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPF 61

Query: 105 SLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKD 149
           S R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ 
Sbjct: 62  SYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQG 107


>gi|259089987|gb|ACV91834.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667427|gb|ACX47924.1| DNA gyrase subunit A [Escherichia coli]
 gi|260667429|gb|ACX47925.1| DNA gyrase subunit A [Escherichia coli]
          Length = 98

 Score =  204 bits (519), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 57/98 (58%), Positives = 74/98 (75%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 60

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
            K AH L+ DL K+TVDF  NYDG+ + P V+  + PN
Sbjct: 61  AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPN 98


>gi|295092032|emb|CBK78139.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A
           subunit [Clostridium cf. saccharolyticum K10]
          Length = 504

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 240/485 (49%), Gaps = 26/485 (5%)

Query: 254 SHIEKTSGDREQIVVTEIPYQVNKAAMLE---KIAELVREKRIVDIADLRDESDRQGYRV 310
             + K   D++++V+TEIPY +  A + +    IAELV  K++ D+ D+ ++S+++G R+
Sbjct: 3   VELGKRKADKDKLVITEIPYTMIGAGINKCLMDIAELVESKKLTDVVDISNQSNKEGIRI 62

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
           V+EL++ A  + I N LY+ T L+  + VNM+A+   +PE   L GILK ++ F+ E   
Sbjct: 63  VLELRKDADVEKIRNILYKKTKLEDTYGVNMLAIVKGRPETLNLRGILKNYLDFQYENNT 122

Query: 371 RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
           R+ + LL K  ++  +  GL  A   +D ++ ++R S N + A+  L+    +A      
Sbjct: 123 RKYRVLLEKELEKKEIQEGLIRACDVIDLIIAVLRGSRNLKDAKACLINGDTSA------ 176

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
             +   +       G +  +E Q  AILE+RL +L GL    +  E      +IKE   I
Sbjct: 177 --IRFKTPELEKDAGKLRFTEKQASAILEMRLYKLIGLEILALEKEHRETLRKIKEYEKI 234

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKR 550
           LS +  +  +IK++L ++K E   PRRT I +G   + DE  +   ++V  +   GY + 
Sbjct: 235 LSDKGTMDQVIKEDLAAIKREFAYPRRTLIEDGKEVVYDESAVEVREVVFVMDRFGYSRI 294

Query: 551 VPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGS 610
           V  S Y   R             E+  T +        +  F+  G +++ KV  +P+G 
Sbjct: 295 VDRSTYDRNRET----------IENENTHVICCLNTDRICLFTDAGVLHQVKVTDIPLGK 344

Query: 611 PQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINR 670
            + +G  + N+   +  +  T  +    + SS      +FAT+   ++R    +F   N 
Sbjct: 345 LRDKGTPIDNLCKFDGTKEQTVFVT---NASSLQGKLFLFATRDAMLKRVPGEEFET-NN 400

Query: 671 SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
               A KL   D ++SV+   + ++++L T  G  +RF +  I     +N+ GVRGI L 
Sbjct: 401 RMVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEI-SVQKKNARGVRGIKLG 459

Query: 731 KGDQV 735
           +G+ +
Sbjct: 460 RGEAL 464



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 6/161 (3%)

Query: 731 KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERC 790
           +   VI            D  + +   ++        D                 +    
Sbjct: 310 ENTHVICCLNTDRICLFTDAGVLHQVKVTDIPLGKLRDKGTPIDNLCKFDGTKEQTVFVT 369

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
               L+ +  L  +     KR    +F  +NR          +K+ E  +LV+V P ++ 
Sbjct: 370 NASSLQGKLFLFATRDAMLKRVPGEEFETNNR------MVAATKLQEGDSLVSVQPADEA 423

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
            +++L +D G  +R  ++EI +  +  +GV      + E +
Sbjct: 424 SEVVLQTDNGVFLRFAMDEISVQKKNARGVRGIKLGRGEAL 464



 Score = 42.1 bits (97), Expect = 0.44,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 64/194 (32%), Gaps = 9/194 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           V    + G  R    S + +   +          +E   V  C   + I L T  G   +
Sbjct: 283 VFVMDRFGYSRIVDRSTYDRNRETI--------ENENTHVICCLNTDRICLFTDAGVLHQ 334

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I +   R+  G    +L K D      + +   +    ++       A  + + G
Sbjct: 335 VKVTDIPLGKLRD-KGTPIDNLCKFDGTKEQTVFVTNASSLQGKLFLFATRDAMLKRVPG 393

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
           +  E  +    ++           +   +   ++  ++ G   R +  +  +  ++ +G+
Sbjct: 394 EEFETNNRMVAATKLQEGDSLVSVQPADEASEVVLQTDNGVFLRFAMDEISVQKKNARGV 453

Query: 828 RATDVSKINEIGAL 841
           R   + +   +  +
Sbjct: 454 RGIKLGRGEALEQV 467


>gi|28916614|gb|AAO59540.1| gyrase A [Bacillus amyloliquefaciens]
          Length = 197

 Score =  204 bits (519), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 119/197 (60%), Positives = 157/197 (79%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDT+D++ NYDG+ +EPVV+ +R+PN+LVNG  GIA GMATNIP H LGEV++G +AV +
Sbjct: 1   KDTIDYQDNYDGAEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEVIEGVLAVSE 60

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           NP+I    LME I G DFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+
Sbjct: 61  NPEITNQELMEYIPGRDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERII 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN L
Sbjct: 121 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNL 180

Query: 328 YRYTSLQSLFSVNMVAL 344
           Y+ T+LQ+ F +N++AL
Sbjct: 181 YKQTALQTSFGINLLAL 197


>gi|313192274|emb|CBY05945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 60/104 (57%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+   ++G +WNK Y K AR+ G+V+GKY+PHG++A+Y  + RMAQ +SLR +L++GQGN
Sbjct: 5   LYA-SRIGHDWNKAYKKSARVVGDVIGKYNPHGDSAVYYTIVRMAQPFSLRYMLVDGQGN 63

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           FGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYDG 
Sbjct: 64  FGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGK 107


>gi|91093525|gb|ABE11584.1| ParC [Escherichia coli]
 gi|91093535|gb|ABE11589.1| ParC [Escherichia coli]
          Length = 105

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 3/105 (2%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S 
Sbjct: 2   DGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDRACYEAMVLMAQPFSY 61

Query: 107 RLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDLGKD 149
           R  L++GQGN+G+ D DP   AA RYTE RL K +  LL +LG+ 
Sbjct: 62  RYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQG 105


>gi|21326979|gb|AAM48110.1|AF500123_1 gyrase [Salmonella enterica subsp. enterica serovar Mbandaka]
          Length = 96

 Score =  203 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           +DGD  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|799017|emb|CAA60388.1| DNA Gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 95

 Score =  203 bits (517), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 56/95 (58%), Positives = 74/95 (77%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           +V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K A
Sbjct: 1   DVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIA 60

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
           H L+ DL K+TVDF  NYDG+ + P V+  + PN+
Sbjct: 61  HELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNL 95


>gi|22953852|gb|AAM21723.1| topoisomerase IV subunit A [Legionella pneumophila]
          Length = 106

 Score =  203 bits (517), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 72/105 (68%), Gaps = 3/105 (2%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
            + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG++A Y+A+  MAQ 
Sbjct: 1   SIADGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQP 60

Query: 104 WSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAHFLLDDL 146
           +S R   ++GQGN+GS D DP   AA RYTE RL   A  LL +L
Sbjct: 61  FSYRYPFVDGQGNWGSPD-DPKSFAAMRYTEARLSLYADVLLGEL 104


>gi|124108693|gb|ABM90923.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 95

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 95


>gi|4566388|gb|AAD23328.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|124108707|gb|ABM90930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 74/94 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|255742426|gb|ACU32467.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/96 (59%), Positives = 73/96 (76%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYATIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
            RL K AH L+ DL K+TVDF  NYDG+ + P V+ 
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMP 96


>gi|217069489|gb|ACJ83233.1| DNA gyrase subunit A [Campylobacter coli]
          Length = 178

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 1/179 (0%)

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            KDTVDF P YD    EP VL AR PN+L+NG  GIAVGMATNIP H+L E+VDG + ++
Sbjct: 1   DKDTVDFVPXYDDXMSEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLL 60

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
           D+ D  L+ LM+ I+GPDFPTG +I G+ GI  AY TGRG + IR  +HIEK   +++ I
Sbjct: 61  DHKDASLEDLMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEK-KSNKDII 119

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
           V+ E+PYQ NKA ++E+IAELV+EK+I  I+++RDESDR+G RVVIELKR A ++++LN
Sbjct: 120 VIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIVLN 178


>gi|313192240|emb|CBY05928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 57/94 (60%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF   
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 96


>gi|21326981|gb|AAM48111.1|AF500124_1 gyrase [Salmonella enterica subsp. enterica serovar Braenderup]
          Length = 97

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 73/97 (75%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           +DGD  AA RYTE RL K AH L+ DL K+TVDF   
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDT 97


>gi|4566386|gb|AAD23327.1| DNA gyrase subunit A [Streptococcus oralis]
          Length = 97

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/96 (58%), Positives = 74/96 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 96


>gi|253762209|gb|ACT35556.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 97

 Score =  203 bits (515), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 73/97 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDYAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
            RL K AH L+ DL K+TVDF  NYDG+ + P V+  
Sbjct: 61  IRLAKIAHELMADLEKETVDFVDNYDGTERIPDVMPT 97


>gi|29165277|gb|AAO65579.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Reading]
          Length = 95

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 73/93 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|325663390|ref|ZP_08151840.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470844|gb|EGC74074.1| hypothetical protein HMPREF0490_02581 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 214

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 56/244 (22%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           +++  ++D+  + ++G  A+ L   DE++ V+    E DI++ TK GQC+RF    +R  
Sbjct: 1   MKKTPITDYANVRKTGLAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVRS- 59

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            GR S+GVRG++L+  D+VI M +    D                               
Sbjct: 60  TGRTSMGVRGMNLSDRDEVIGMQLHTQGD------------------------------- 88

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                 ++L  SEKG GKRT+  +F   NR GKG++   +++  
Sbjct: 89  ----------------------YLLIASEKGMGKRTAIEEFTCQNRGGKGVKCYKITE-- 124

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           + G ++ V  VN++++I++++ +G +IR+    I I  R   GV + +   + +V S+ +
Sbjct: 125 KTGNVIGVKAVNEDNEIMIINTEGIVIRMECAGISILGRVASGVKLINLDSNTKVASIAK 184

Query: 897 IRES 900
           +RE+
Sbjct: 185 VRET 188



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/227 (16%), Positives = 89/227 (39%), Gaps = 17/227 (7%)

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLP 607
           +K+ P++ Y   R+ G   + + +R++D + ++ I      ++  +  G   + K   + 
Sbjct: 1   MKKTPITDYANVRKTG--LAAITLREDDELIEVKITDNEKDIIMVTKYGQCIRFKEQDVR 58

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                + G   +N         ++        +      Y++ A++ G  +R  + +F  
Sbjct: 59  STGRTSMGVRGMN---------LSDRDEVIGMQLHTQGDYLLIASEKGMGKRTAIEEF-T 108

Query: 668 INRSGKIAMKLDSRDE----ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               G   +K     E    ++ V+   ++N+I++    G  +R   + I    GR + G
Sbjct: 109 CQNRGGKGVKCYKITEKTGNVIGVKAVNEDNEIMIINTEGIVIRMECAGI-SILGRVASG 167

Query: 724 VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           V+ I+L    +V S+A V    A+ +         +     +  +T 
Sbjct: 168 VKLINLDSNTKVASIAKVRETVAEENAEEKAEVEEAGSEESLELETN 214


>gi|313192254|emb|CBY05935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 75/97 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             AA RYTE RL K AH L+ DL K+TVDF   YDG 
Sbjct: 64  SAAAMRYTEIRLAKIAHELMADLEKETVDFVEQYDGK 100


>gi|313192248|emb|CBY05932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 4   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 63

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 64  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 96


>gi|60651670|gb|AAX32846.1| GyrA [Riemerella anatipestifer]
          Length = 105

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 60/104 (57%), Positives = 79/104 (75%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +GM ++GV  NKKY+  AR  G+V+GKYHPHG+ ++YD + RMAQ WSLR   ++GQGNF
Sbjct: 1   YGMYRLGVFSNKKYLTSARNVGDVLGKYHPHGDRSVYDHMVRMAQPWSLRYPQVDGQGNF 60

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           GS+DGDPPAA RYTE RL+K +  +L DL K+T DF+ N+D S 
Sbjct: 61  GSMDGDPPAAMRYTEARLKKISDEILSDLDKETADFQNNFDDSL 104


>gi|312183505|gb|ADQ42322.1| DNA gyrase subunit A [Actinobaculum schaalii]
          Length = 105

 Score =  202 bits (513), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 70/104 (67%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G   +  + K A+I G+VMG YHPHG+AAIYD + R+AQ WS+R  L+ GQGNFG+    
Sbjct: 1   GDRPDSSFSKSAKIVGDVMGHYHPHGDAAIYDTMVRLAQPWSMRYPLVSGQGNFGTSGDL 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVL 167
             AA RYTE R+   A  ++ D+ ++TVDF PNYDGS  EP +L
Sbjct: 61  GAAAPRYTEARMAPLALEMVRDIKENTVDFEPNYDGSLMEPTIL 104


>gi|110456308|gb|ABG74699.1| GyrA [Ureaplasma urealyticum]
          Length = 101

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 53/89 (59%), Positives = 67/89 (75%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+  +Y  + RMAQD+S+R LL++G GNFGS+DGD  AA RYTE RL K ++
Sbjct: 13  VIGKYHPHGDQVVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARLSKISY 72

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
            LL  + K+TVDF PNYD S QEP VL +
Sbjct: 73  ELLKYIDKETVDFVPNYDASEQEPSVLPS 101


>gi|224086458|ref|XP_002193920.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Taeniopygia guttata]
          Length = 2085

 Score =  201 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 114/480 (23%), Positives = 193/480 (40%), Gaps = 49/480 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG AA+   
Sbjct: 1276 ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEAALMMT 1331

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  +   +  + + 
Sbjct: 1332 IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLVFPPMDDNILR 1391

Query: 153  FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            F   YD + + EP   +    P VLVNG  GI  G A  IP  ++ EVV+    ++D  +
Sbjct: 1392 FL--YDDNQRVEPEWYMPI-IPMVLVNGAEGIGTGWACKIPNFDIREVVNNIRRLMDGEE 1448

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                        P  P+     G          G    VI G    E +  D   I +TE
Sbjct: 1449 ----------PLPMLPSYKNFKGTID-----ELGPNQYVISG----EVSILDSTTIEITE 1489

Query: 271  IPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E++ E +    EK    I D ++       R V+++     A+     L
Sbjct: 1490 LPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVRFVVKMTEDKLAEAEAVGL 1549

Query: 328  YRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L    G+  +  +   ILK F   R      R ++L+      A
Sbjct: 1550 HKVFKLQTSLTCNSMVLFDHVGFLKKYDSPQDILKEFFELRLRYYNLRKEWLIGMLG--A 1607

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I     P+    + L+QR + +  +K   +  +        
Sbjct: 1608 ESAKLSNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDPVKAWKEAQNKDEEEGEE 1667

Query: 444  DGTMYLSEV----QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
            + +   S          +L + L  LT   +D++  + ++   E++       S S L  
Sbjct: 1668 EESDKESSSASGPDFNYLLNMPLWYLTKEKKDELCKQRDNKEKELETLKR--KSPSDLWK 1725


>gi|224458670|gb|ACN43198.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 260

 Score =  201 bits (512), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 133/286 (46%), Positives = 182/286 (63%), Gaps = 26/286 (9%)

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
           +  LME I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P
Sbjct: 1   IQELMEFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERILVTELP 60

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
           YQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN LY+ T+
Sbjct: 61  YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 120

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           LQ+ F +NM+AL   +P+   L   L  ++  ++ V+ RRT Y L KA  RAH+L GL I
Sbjct: 121 LQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQKVVIRRRTAYELRKAEARAHILEGLRI 180

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
           A+ +LD V+ +IR S   E AR  L+++                            L+E 
Sbjct: 181 ALDHLDAVISLIRSSQTAEIARTGLIEQ--------------------------FSLTEK 214

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
           Q +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L
Sbjct: 215 QAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVL 260


>gi|321268210|gb|ADW78913.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 98

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 76/96 (79%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           GKYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  +
Sbjct: 1   GKYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEI 60

Query: 143 LDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           + D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  MADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 96


>gi|156063624|ref|XP_001597734.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980]
 gi|154697264|gb|EDN97002.1| hypothetical protein SS1G_01930 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1846

 Score =  201 bits (511), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 96/533 (18%), Positives = 187/533 (35%), Gaps = 53/533 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
            R+IP + DGLKP  R++++   +  +  + K V+ A    +V   YH HG A++   +  
Sbjct: 831  RSIPSVIDGLKPGQRKVMYACFKRNLTNDMKVVELAGYVSQVSA-YH-HGEASMQMTIVG 888

Query: 100  MAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
            +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L    +++  
Sbjct: 889  LAQNFVGSNNVNCLEPSGNFGSRLQGGSDAASARYIFTRLSPFARRVYSALDDPVLEYNV 948

Query: 156  NYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
            + DG   EPV      P VL+NG  GI  G +TNIP ++  E+V+     +   D   + 
Sbjct: 949  D-DGRSIEPVTYFPVVPMVLINGADGIGTGWSTNIPNYHPVEIVNNLKRRMGRLDDSGEE 1007

Query: 216  -----LMEII---RGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
                 +M      +G   P G       GI                           ++ 
Sbjct: 1008 KPFETMMPWFRGWKGTAEPAGPDRYKFNGIIR--------------------ETGDTEVE 1047

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQ 326
            +TE+P ++       K+ E+++ +++     D ++ +D +   ++I++        ++  
Sbjct: 1048 ITELPIRMWTDDFKAKLEEIIKAEKVPSFIKDYKEFNDHKTVHMIIQMDDKHMKAALVEG 1107

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
            L     L    + + +    ++ +      +      F E+     T             
Sbjct: 1108 LAEKFKLNKTVATSNLVAFDHRGQIRKYEKVEDILEEFYEQRFKMYTVRKAYWVNKLNVE 1167

Query: 387  LVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
               L      + E++  ++I           EL +R +             ++   + ++
Sbjct: 1168 YRKLTNQARFVTEIIENKLIVSKKKKPVLVAELRKRGYEGFPKVSEAKKAGETDDVVENE 1227

Query: 445  GTMYLSE----VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRL 497
              + + E         +L L +  LT    D +  + +    EI     +         L
Sbjct: 1228 EEVGIDEDAGARDFDYLLGLPIWSLTQERVDKLNKQKDDKKDEIDTLERLSEKDLWCEDL 1287

Query: 498  LGIIKQELLSVKD--------ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
               + +    +K              RR+  +              ED   TV
Sbjct: 1288 DAFVLEWEDQLKQDAEISKAIRNTNRRRSNKIGAGGKPGGRGRPRNEDEEFTV 1340


>gi|313192244|emb|CBY05930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 75/100 (75%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+
Sbjct: 1   HVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSI 60

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           DGD  AA RYTE RL K AH L+ DL K+TV     +DG+
Sbjct: 61  DGDSAAAMRYTEIRLAKIAHELMADLEKETVVSWITFDGN 100


>gi|313192258|emb|CBY05937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 74/97 (76%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+G+YHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVIGEYHPHGDPAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             AA RYTE RL K AH L+ DL K+TVDF   YDG 
Sbjct: 64  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDKYDGK 100


>gi|124108705|gb|ABM90929.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  201 bits (510), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|19908359|gb|AAL99230.1| gyrase [Salmonella enterica subsp. enterica serovar Enteritidis]
          Length = 92

 Score =  200 bits (509), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDN 91


>gi|218677660|ref|ZP_03525557.1| DNA gyrase subunit A [Rhizobium etli CIAT 894]
          Length = 105

 Score =  200 bits (508), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 70/105 (66%), Positives = 86/105 (81%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           MTE       +   GI  +SI +EMQ SYL YA++VI+ RA+PD+RDGLKPVHRRIL+GM
Sbjct: 1   MTEQTPPGGGKLPPGIEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            ++G++WNKKYVKCAR++G+VMGKYHPHGN AIYDALARMAQ WS
Sbjct: 61  SELGIDWNKKYVKCARVTGDVMGKYHPHGNTAIYDALARMAQPWS 105


>gi|124108755|gb|ABM90954.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 58/94 (61%), Positives = 73/94 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           D  AA RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDN 94


>gi|124108743|gb|ABM90948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|29165275|gb|AAO65578.1| DNA gyrase [Salmonella enterica subsp. enterica serovar
           Brandenburg]
          Length = 95

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/93 (60%), Positives = 73/93 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|124108715|gb|ABM90934.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108733|gb|ABM90943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|4566396|gb|AAD23332.1| DNA gyrase subunit A [Streptococcus mitis]
          Length = 97

 Score =  200 bits (508), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 55/96 (57%), Positives = 74/96 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  A +
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAADQ 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           RYTE R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RYTEARMSKIALEMLRDINKNTVDFVANYDANEREP 96


>gi|94467525|dbj|BAE93904.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 70/90 (77%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           FGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|124108735|gb|ABM90944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEKETVDFV 93


>gi|313192262|emb|CBY05939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 73/97 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             AA RYTE RL K AH L+ DL K+TVDF  N D  
Sbjct: 64  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDNNDDK 100


>gi|320540723|ref|ZP_08040331.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029214|gb|EFW11285.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 162

 Score =  199 bits (506), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 97/162 (59%), Positives = 122/162 (75%), Gaps = 1/162 (0%)

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           DL K+TVDF PNYDG+ Q P V+ A+ PN+L+NG  GIAVGMATNIP HNL EV++GC+A
Sbjct: 1   DLEKETVDFVPNYDGTEQIPAVMPAKIPNLLINGASGIAVGMATNIPPHNLSEVINGCLA 60

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE-KTSGDR 263
            ID+ +I ++ LM  I GPDFPT A+I GR GI+ AY TGRG I +R  + +E      R
Sbjct: 61  YIDDENISIEGLMAHIPGPDFPTAAIINGRRGIEEAYRTGRGKIYLRARAEVESDAKTGR 120

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
           E I+V EIPYQVNKA ++EKIAELV+EKR+  I+ LRDESD+
Sbjct: 121 ETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDK 162


>gi|11761974|gb|AAG40270.1|AF303649_1 topoisomerase IV subunit C [Klebsiella oxytoca]
          Length = 106

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 3/107 (2%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
            K AR  G+V+GKYHPH ++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KKSARTVGDVLGKYHPHCDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 59

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLV 176
           YTE R  K A  LL  LG+ TVD+ PN+DG+ QEP +L AR PN+L+
Sbjct: 60  YTESRGSKYAELLLSQLGQGTVDWVPNFDGTLQEPKMLPARMPNILL 106


>gi|321268208|gb|ADW78912.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 95

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 75/95 (78%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           KYHPHG+ ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++
Sbjct: 1   KYHPHGDRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIM 60

Query: 144 DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            D+ K+TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  ADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLING 95


>gi|29165279|gb|AAO65580.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Java]
          Length = 95

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 56/93 (60%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMADLEKETVDFVD 95


>gi|289619683|emb|CBI53966.1| putative TOP2 protein [Sordaria macrospora]
          Length = 1915

 Score =  198 bits (504), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 104/502 (20%), Positives = 194/502 (38%), Gaps = 41/502 (8%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              +S TD +    + +++   + R+IP + DGLKP  R++LFG  +  +  +    K   
Sbjct: 790  EKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHD---QKVVE 845

Query: 77   ISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERY 130
            ++G V     YH HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY
Sbjct: 846  LAGYVSKEAAYH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARY 904

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               RL   A  +   L +  ++F+ + DG   EP V     P VLVNG  GI  G +T+I
Sbjct: 905  IHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTGWSTSI 963

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P ++  ++V+     +                P  P      G  G       G      
Sbjct: 964  PNYHPLDIVENLKRRMGRDSSGDGE-----EKPFEPMTPWFRGWKGTPE--PDGPNKFKF 1016

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYR 309
             G+   E    +  ++ VTE+P ++       K+ E++R  +    I D ++ +D Q   
Sbjct: 1017 NGIV--EVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKEYNDHQTVH 1074

Query: 310  VVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             +I L+    +  + + L   ++ T   +  ++      G   +      I++ +  +R 
Sbjct: 1075 FIIALEEKQMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIYKYENPQEIMEEYYHYRL 1134

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNA 424
             +   R K+ L            L      + E++  ++I          +EL +R + A
Sbjct: 1135 NLYGERKKHWLKVYHAD---YRKLQNQYRFISEIIENKLIVAKKKKSVLVQELRERKYEA 1191

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-------RAILELRLARLTGLGRDDIRNEL 477
               K     +      +G+       E            +L + +  LT    D ++ ++
Sbjct: 1192 FPPKSDGRNVKSPDEELGAAENE--DEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQI 1249

Query: 478  NSLGIEIKECLDILSSRSRLLG 499
             +   E  E   +  S   L  
Sbjct: 1250 AAKKAEYDELDAL--SEKDLWC 1269


>gi|19549339|gb|AAL89786.2|AF487421_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 94

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 55/93 (59%), Positives = 72/93 (77%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
            + Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA
Sbjct: 2   EQAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAA 61

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            RYTE RL K AH L+ DL K+TVDF   YDG+
Sbjct: 62  MRYTEIRLAKIAHELMADLEKETVDFVDTYDGN 94


>gi|193794228|gb|ACF21326.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 106/189 (56%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L+    E I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLEALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|24020930|gb|AAN40860.1| ParC [Streptococcus salivarius]
          Length = 106

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 75/106 (70%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 106


>gi|28916606|gb|AAO59536.1| gyrase A [Bacillus mojavensis]
          Length = 197

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/197 (58%), Positives = 154/197 (78%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           KDT+D++  Y+G  +EPVV+ +R+PN+LVNG  GIA GMATNIP H LGE++DG +A  +
Sbjct: 1   KDTIDYQDTYEGPEREPVVMPSRFPNLLVNGAAGIAAGMATNIPPHQLGEIIDGVLAGGE 60

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           N DI +  +M  I GPDFPT   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+
Sbjct: 61  NKDITIPEVMAFIPGPDFPTAGQILGRSGIRKAYESGRGSITIRAKAEIEETSSGKERIL 120

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A VILN L
Sbjct: 121 VTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNHL 180

Query: 328 YRYTSLQSLFSVNMVAL 344
           Y+ T+LQ+ F +NM+AL
Sbjct: 181 YKQTALQTSFGINMLAL 197


>gi|193794070|gb|ACF21247.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794156|gb|ACF21290.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794182|gb|ACF21303.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794236|gb|ACF21330.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794248|gb|ACF21336.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794268|gb|ACF21346.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794276|gb|ACF21350.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 105/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|124108703|gb|ABM90928.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  198 bits (503), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|193794296|gb|ACF21360.1| DNA gyrase subunit A [Actinomyces viscosus]
          Length = 188

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  +EPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    ++
Sbjct: 1   EDSVDFQDNYDGRNKEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIEQIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|3152709|gb|AAC17123.1| DNA topoisomerase IV C subunit [Streptococcus pneumoniae]
          Length = 107

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 54/107 (50%), Positives = 75/107 (70%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E 
Sbjct: 1   RRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEM 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  HGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 107


>gi|194360505|gb|ACF57900.1| DNA gyrase A subunit [Actinomyces meyeri]
          Length = 188

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 132/189 (69%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           ++ VDF+ NYDG  +EP +L AR+PN+L NG  GIAVGMAT IP HNL EV  G    + 
Sbjct: 1   EECVDFQDNYDGRNKEPTILPARFPNLLANGSEGIAVGMATRIPPHNLREVARGVEWALA 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +P+   + L+E    II GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPEATREELLEALLTIIPGPDFPTGATILGRKGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQISGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|322707413|gb|EFY98991.1| DNA topoisomerase 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1647

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 177/479 (36%), Gaps = 38/479 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  +  +K   K   ++G V     YH HG A++   +
Sbjct: 807  RSIPSVIDGLKPGQRKVLYACFKRNLIKDK---KVVELAGYVSEHTAYH-HGEASLQQTI 862

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + ++E  GNFGS    G   A+ RYT  RL   A  +   L +  +  
Sbjct: 863  IGLAQNFVGSNNINILEPSGNFGSRLAGGSDAASPRYTFTRLAPFAKKIFSPLDEACLKH 922

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            +   DG   EP V     P VLVNG  GI  G +T IP ++  ++V      +   D D 
Sbjct: 923  QYE-DGKRIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIVKNLKRRMGRLDEDG 981

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                       +       G  G     A G       G++   +   +  +I++TE+P 
Sbjct: 982  AEEKPFETMTPW-----FRGWKGSPE--AAGPDRYKFNGIAS--QNDQNPNEIIITELPI 1032

Query: 274  QVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADVILNQL---YR 329
            ++       K+ +++        I D ++ +D +     I +       ++   L   ++
Sbjct: 1033 RMWTDDFKAKLEKVISGNDGPTWIKDYKEFNDHKTVHFEIMVDEKHLPKILEEGLLERFK 1092

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
             T   +  ++      G   +   +  IL+ +   R ++   R +Y L    +       
Sbjct: 1093 LTKQVATSNLVAFDTRGQIRKYEKVEDILEEYYVHRLQMYHDRKQYWLQVYDNDL---EK 1149

Query: 390  LAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
            L      + E++   +I           EL  R + A           D       +   
Sbjct: 1150 LKNQYRFIKEIIDGELIVGRKKKAVLVSELRDRKYKAFPPGGQKQKTADDEPDESDNEND 1209

Query: 448  YLSEV-------QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
               +            +L + +  LT    D +++ +N    +I+       S   L  
Sbjct: 1210 DDDDKATAAGAHDYDYLLSMPIWSLTQERLDKLKDAINKKKDDIEGLS--AKSEKDLWC 1266


>gi|193794280|gb|ACF21352.1| DNA gyrase subunit A [Actinomyces johnsonii]
 gi|193794292|gb|ACF21358.1| DNA gyrase subunit A [Actinomyces johnsonii]
          Length = 188

 Score =  198 bits (502), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 104/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|313192280|emb|CBY05948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 107

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           +   ++G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 5   YA-WRIGHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNF 63

Query: 118 GSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           GS+DGD  AA RYTE RL K AH L+ DL K+TVDF   
Sbjct: 64  GSIDGDSAAAMRYTEIRLAKIAHGLMADLEKETVDFVDT 102


>gi|193794284|gb|ACF21354.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 105/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEI-HGR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|124108689|gb|ABM90921.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108697|gb|ABM90925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108699|gb|ABM90926.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|124108711|gb|ABM90932.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|197209604|gb|ACH48044.1| DNA gyrase [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 93

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 56/93 (60%), Positives = 71/93 (76%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K AR+ G+V GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA  
Sbjct: 1   PYKKAARVVGDVTGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMP 60

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           YTE RL K AH L+ DL K+TVDF  NYDG+ +
Sbjct: 61  YTEIRLAKIAHGLMADLEKETVDFVDNYDGTEK 93


>gi|261599205|gb|ACX85665.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 53/106 (50%), Positives = 74/106 (69%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
              ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGD
Sbjct: 1   KHTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
           PPAA RYTE RL + A +LL D+ K+TV F  N+D + +EP  L A
Sbjct: 61  PPAAMRYTEARLSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTALPA 106


>gi|193794190|gb|ACF21307.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  197 bits (501), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY +GRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRSGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|193794068|gb|ACF21246.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794072|gb|ACF21248.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794074|gb|ACF21249.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794076|gb|ACF21250.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794078|gb|ACF21251.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794082|gb|ACF21253.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794086|gb|ACF21255.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794088|gb|ACF21256.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794090|gb|ACF21257.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794092|gb|ACF21258.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794094|gb|ACF21259.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794096|gb|ACF21260.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794098|gb|ACF21261.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794106|gb|ACF21265.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794108|gb|ACF21266.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794110|gb|ACF21267.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794114|gb|ACF21269.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794116|gb|ACF21270.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794124|gb|ACF21274.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794128|gb|ACF21276.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794130|gb|ACF21277.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794132|gb|ACF21278.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794136|gb|ACF21280.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794138|gb|ACF21281.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794142|gb|ACF21283.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794144|gb|ACF21284.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794146|gb|ACF21285.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794148|gb|ACF21286.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794150|gb|ACF21287.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794158|gb|ACF21291.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794160|gb|ACF21292.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794170|gb|ACF21297.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794176|gb|ACF21300.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794178|gb|ACF21301.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794180|gb|ACF21302.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794188|gb|ACF21306.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794192|gb|ACF21308.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794198|gb|ACF21311.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794200|gb|ACF21312.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794202|gb|ACF21313.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794208|gb|ACF21316.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794210|gb|ACF21317.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794212|gb|ACF21318.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794216|gb|ACF21320.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794218|gb|ACF21321.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794222|gb|ACF21323.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794232|gb|ACF21328.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794238|gb|ACF21331.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794240|gb|ACF21332.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794242|gb|ACF21333.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794246|gb|ACF21335.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794250|gb|ACF21337.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794252|gb|ACF21338.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794254|gb|ACF21339.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794256|gb|ACF21340.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794258|gb|ACF21341.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794260|gb|ACF21342.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794262|gb|ACF21343.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794278|gb|ACF21351.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794282|gb|ACF21353.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794298|gb|ACF21361.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 104/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|124108747|gb|ABM90950.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108753|gb|ABM90953.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108757|gb|ABM90955.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108761|gb|ABM90957.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 94

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 94


>gi|124108721|gb|ABM90937.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  197 bits (501), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 57/93 (61%), Positives = 72/93 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           D  AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFVD 93


>gi|154297045|ref|XP_001548951.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
 gi|150843138|gb|EDN18331.1| hypothetical protein BC1G_12611 [Botryotinia fuckeliana B05.10]
          Length = 1823

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 100/573 (17%), Positives = 205/573 (35%), Gaps = 71/573 (12%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            T+ +++ D    K +   S+ D M              R+IP + DGLKP  R++++   
Sbjct: 802  TDKMLTYDNFINKELILFSMADNM--------------RSIPSVIDGLKPGQRKVMYACF 847

Query: 62   QMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
            +  +  +   +K   ++G V  +  YH HG A++   +  +AQ++  S  +  +E  GNF
Sbjct: 848  KRNLIND---MKVVELAGYVSQISAYH-HGEASMQMTIVGLAQNFVGSNNVNCLEPSGNF 903

Query: 118  GSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            GS    G   A+ RY   RL   A  +   L    +++  + DG   EPV      P VL
Sbjct: 904  GSRLQGGSDSASARYIFTRLSPFARRVYSALDDPVLEYNID-DGKSIEPVTYFPVVPMVL 962

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA-----LMEII---RGPDFPT 227
            +NG  GI  G +TNIP ++  EVV+     +   D   +      +M      +G   P 
Sbjct: 963  INGAEGIGTGWSTNIPNYHPVEVVNNLKRRMGRLDDSGEEKPFETMMPWFRGWKGTPEPA 1022

Query: 228  GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
            G       GI                           ++ +TE+P ++       K+ E+
Sbjct: 1023 GPDRYKFNGIIR--------------------ETGDTEVEITELPIRMWTDDFKAKLEEV 1062

Query: 288  VREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
            ++ +++     D ++ +D +   ++I++      + +   L     L    + + +    
Sbjct: 1063 IKAEKVPSFIKDYKEFNDHKNVHMIIQMDDKHMKEALKEGLAEKFKLNKTVATSNLVAFD 1122

Query: 347  YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RII 404
            ++ +      +      F E+ +   T    +  +        L      + E++  ++I
Sbjct: 1123 HRGQIRKYDKVEDILEEFYEQRLKMYTVRKAHWMKKLNVEYRKLTNQARFVTEIIENKLI 1182

Query: 405  RFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE----VQTRAILEL 460
                       EL +R +             ++   + ++  +   E         +L L
Sbjct: 1183 VSKKKKPVLVAELRKRGYEGFPKITDAKKAGEADDVVENEEEVTADEDAGARDYDYLLGL 1242

Query: 461  RLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRLLGIIKQELLSVKD------- 510
             +  LT    D +  ++     EI     +         L   + +    ++        
Sbjct: 1243 PIWSLTQERVDKLNKQMYDKKDEIDTLDRLSEKDLWCEDLDAFVLEWEDQLRQDAEITKT 1302

Query: 511  -ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
                  RR+  +        +  + +ED   T+
Sbjct: 1303 IRNTNRRRSNKIGAGGKPTGKGRLKKEDEEFTL 1335


>gi|121511882|gb|ABM55392.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  197 bits (500), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 106/320 (33%), Positives = 168/320 (52%), Gaps = 60/320 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ +    +  +V
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFD---ESKSLV 117

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRF 708
           F T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF
Sbjct: 118 FFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRF 177

Query: 709 PISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            +   R   GR++ GVRGI      D V+   ++   +                      
Sbjct: 178 ELEKTRD-QGRSTRGVRGIKFKIDTDFVVDADVIDSEE---------------------- 214

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 215 ------------------------------QEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVSKINEIGALVAVFPV 847
            A  +S   + G +V    V
Sbjct: 245 IAMKLSP--KTGNIVGEVLV 262



 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 12/251 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++   + Q+I+  +  G   R     
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASR 875
            R   RS +G+R        +   +V    ++ +  +I+ VS+KG   R  + E R+ +R
Sbjct: 182 TRDQGRSTRGVRGIKFKI--DTDFVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNR 239

Query: 876 ATKGVVIFSTA 886
           A  GV+    +
Sbjct: 240 AGSGVIAMKLS 250



 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE++  +  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDE 112


>gi|193794080|gb|ACF21252.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794084|gb|ACF21254.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794100|gb|ACF21262.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794102|gb|ACF21263.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794104|gb|ACF21264.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794112|gb|ACF21268.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794118|gb|ACF21271.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794120|gb|ACF21272.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794122|gb|ACF21273.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794126|gb|ACF21275.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794134|gb|ACF21279.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794140|gb|ACF21282.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794152|gb|ACF21288.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794154|gb|ACF21289.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794162|gb|ACF21293.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794164|gb|ACF21294.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794166|gb|ACF21295.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794168|gb|ACF21296.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794172|gb|ACF21298.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794174|gb|ACF21299.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794184|gb|ACF21304.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794186|gb|ACF21305.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794196|gb|ACF21310.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794214|gb|ACF21319.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794220|gb|ACF21322.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794224|gb|ACF21324.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794226|gb|ACF21325.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794230|gb|ACF21327.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794234|gb|ACF21329.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794244|gb|ACF21334.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794264|gb|ACF21344.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794266|gb|ACF21345.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794270|gb|ACF21347.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794272|gb|ACF21348.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794274|gb|ACF21349.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794286|gb|ACF21355.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794288|gb|ACF21356.1| DNA gyrase subunit A [Actinomyces naeslundii]
 gi|193794290|gb|ACF21357.1| DNA gyrase subunit A [Actinomyces naeslundii]
          Length = 188

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 104/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L AR+PN+LVNG  GIAVGMAT IP HNL E+  G    ++
Sbjct: 1   EDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMATRIPPHNLREIARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|193794194|gb|ACF21309.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794204|gb|ACF21314.1| DNA gyrase subunit A [Actinomyces oris]
 gi|193794206|gb|ACF21315.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 104/189 (55%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEI-HGR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|124108691|gb|ABM90922.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108695|gb|ABM90924.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108719|gb|ABM90936.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108731|gb|ABM90942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|22094462|gb|AAM91910.1|AF498910_1 gyrase A [Salmonella enterica subsp. enterica serovar Derby]
          Length = 101

 Score =  197 bits (500), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 57/102 (55%), Positives = 75/102 (73%), Gaps = 3/102 (2%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKDT--VDFRPNYDG 159
           +DGD  AA RYTE RL K AH L+ DL K+   + + P YDG
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKERRWISWIP-YDG 101


>gi|124108723|gb|ABM90938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108767|gb|ABM90960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|291290484|dbj|BAI83279.1| topoisomerase II medium subunit [Enterobacteria phage AR1]
          Length = 442

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 173/432 (40%), Gaps = 50/432 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K       ++ KDT ++ P +      P    L    P VL+NG  GIA G AT I
Sbjct: 120 ARVSK----NFYNVYKDT-EYAPVHQDKEHIPPAFYLPV-IPTVLLNGVSGIATGYATYI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIV 249
             H++  V    +  +    +        +  P+F      I G+  I+  Y        
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + KI + + +K         D     G+ 
Sbjct: 224 -----------TSRTQMHITEIPYKYDRETYVSKILDPLEDK---GFITWDDACGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVA 363
             ++ ++      + +    ++ +   L    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSW 422
            R+  V +R    + +            +A A    + ++I      +   R+EL +   
Sbjct: 330 VRKTYVQKRIDNKIKETES------AFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELS 383

Query: 423 NASDIKDLIDLI 434
                   +D +
Sbjct: 384 KIEMYSSYVDKL 395


>gi|194360503|gb|ACF57899.1| DNA gyrase A subunit [Actinomyces gerencseriae]
          Length = 188

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +++VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EESVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVASGVQWFLE 60

Query: 208 NPDIDLDALM----EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L+    E + GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLESLIERVPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVGGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|322695778|gb|EFY87581.1| DNA topoisomerase 2 [Metarhizium acridum CQMa 102]
          Length = 1653

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/373 (21%), Positives = 146/373 (39%), Gaps = 27/373 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  +  +K   K   ++G V     YH HG A++   +
Sbjct: 816  RSIPSVIDGLKPGQRKVLYACFKRNLTKDK---KVVELAGYVSEHTAYH-HGEASLQQTI 871

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  S  + ++E  GNFGS    G   A+ RYT  RL   A  +   L +  +  
Sbjct: 872  IGLAQDFVGSNNINVLEPSGNFGSRLAGGSDAASPRYTFTRLAPFAKKIFSPLDEACLKH 931

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            +   DG   EP V     P VLVNG  GI  G +T IP ++  ++V      +   D D 
Sbjct: 932  QYE-DGKRIEPEVYSPILPMVLVNGADGIGTGWSTTIPNYHPADIVKNLKRRMGRLDEDD 990

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                       +  G          + Y                +   +  +I++TE+P 
Sbjct: 991  AEEKPFETMTPWFRGWKGNPEAAGPDRYKF---------NGIASQNDQNPNEIIITELPI 1041

Query: 274  QVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADVILNQL---YR 329
            ++       K+ +++        I D ++ +D +     I +       ++   L   ++
Sbjct: 1042 RMWTDDFKAKLEKVISGSDGPTWIKDYKEFNDHKTVHFEIMVDEKHLPKILEEGLLERFK 1101

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
             T   +  ++      G   +   +  IL+ +   R ++   R +Y L    +       
Sbjct: 1102 LTKQIATSNLVAFDTRGQIRKYEKVEDILEEYYVHRLQMYHARKQYWLQVYDNDL---EK 1158

Query: 390  LAIAVANLDEVVR 402
            L      + E++ 
Sbjct: 1159 LKNQYRFIKEIID 1171


>gi|62125793|gb|AAX63810.1| topoisomerase IV subunit A [Haemophilus quentini]
          Length = 106

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 3/107 (2%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +   +KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP
Sbjct: 1   LNATEKYKKSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DP 59

Query: 125 P--AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCA 169
              AA RYTE RL K +  LL +L + TVD++PN+DG+  EP  L A
Sbjct: 60  KSFAAMRYTESRLSKISEILLSELEQGTVDYQPNFDGTLAEPQYLPA 106


>gi|124108729|gb|ABM90941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVGGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLEKETVDFV 93


>gi|32481444|gb|AAP84068.1| gyrase [Enterococcus casseliflavus]
          Length = 83

 Score =  196 bits (499), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 70/83 (84%)

Query: 35  NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIY 94
           +VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K + K ARI G+VMGKYHPHG++AIY
Sbjct: 1   SVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIY 60

Query: 95  DALARMAQDWSLRLLLIEGQGNF 117
           +++ RMAQ +S R +L++G GNF
Sbjct: 61  ESMVRMAQPFSYRYMLVDGHGNF 83


>gi|228861574|ref|YP_002854595.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
 gi|227438590|gb|ACP30903.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB14]
          Length = 442

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 173/432 (40%), Gaps = 50/432 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K       ++ KDT ++ P +      P    L    P VL+NG  GIA G AT I
Sbjct: 120 ARVSK----NFYNVYKDT-EYAPVHQDKEHIPPAFYLPI-IPTVLLNGVSGIATGYATYI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIV 249
             H++  V    +  +    +        +  P+F      I G+  I+  Y        
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + KI + + +K         D     G+ 
Sbjct: 224 -----------TSRTQMHITEIPYKYDRETYVSKILDPLEDK---GFITWDDACGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVA 363
             ++ ++      + +    ++ +   L    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYSLCDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSW 422
            R+  V +R    + +            +A A    + ++I      +   R+EL +   
Sbjct: 330 VRKTYVQKRIDNKIKETES------AFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELS 383

Query: 423 NASDIKDLIDLI 434
                   +D +
Sbjct: 384 KIDMYSSYVDKL 395


>gi|9632656|ref|NP_049875.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|1351263|sp|P07065|TOP5_BPT4 RecName: Full=DNA topoisomerase medium subunit; AltName:
           Full=Protein Gp52
 gi|5354280|gb|AAD42487.1|AF158101_74 gp52 topoisomerase II, medium subunit [Enterobacteria phage T4]
 gi|728620|emb|CAA27959.1| 52-protein [Enterobacteria phage T4]
 gi|299780622|gb|ADJ39984.1| DNA topoisomerase II medium subunit [Enterobacteria phage T4T]
          Length = 442

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 172/432 (39%), Gaps = 50/432 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K       ++ KDT ++ P +      P    L    P VL+NG  GIA G AT I
Sbjct: 120 ARVSK----NFYNVYKDT-EYAPVHQDKEHIPPAFYLPI-IPTVLLNGVSGIATGYATYI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIV 249
             H++  V    +  +    +        +  P+F      I G+  I+  Y        
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + KI + +  K         D     G+ 
Sbjct: 224 -----------TSRTQMHITEIPYKYDRETYVSKILDPLENK---GFITWDDACGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVA 363
             ++ ++      + +    ++ +   L    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSW 422
            R+  V +R    + +            +A A    + ++I      +   R+EL +   
Sbjct: 330 VRKTYVQKRIDNKIKETES------AFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELS 383

Query: 423 NASDIKDLIDLI 434
                   +D +
Sbjct: 384 KIDMYSSYVDKL 395


>gi|215536135|gb|ACJ68515.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 96

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 71/95 (74%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDFAVYHTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY 171
           K AH L+ DL K+TVDF  NYDG+ + P V+  + 
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTKI 95


>gi|121511878|gb|ABM55390.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/320 (33%), Positives = 168/320 (52%), Gaps = 60/320 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ +    +  +V
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFD---ESKSLV 117

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRF 708
           F T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF
Sbjct: 118 FFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRF 177

Query: 709 PISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            +   R   GR++ GVRGI      D V+   ++   +                      
Sbjct: 178 ELEKTRD-QGRSTRGVRGIKFKIDTDIVVDADVIDSEE---------------------- 214

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 215 ------------------------------QEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVSKINEIGALVAVFPV 847
            A  +S   + G +V    V
Sbjct: 245 IAMKLSP--KTGNIVGEVLV 262



 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 12/251 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++   + Q+I+  +  G   R     
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASR 875
            R   RS +G+R        +   +V    ++ +  +I+ VS+KG   R  + E R+ +R
Sbjct: 182 TRDQGRSTRGVRGIKFKI--DTDIVVDADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNR 239

Query: 876 ATKGVVIFSTA 886
           A  GV+    +
Sbjct: 240 AGSGVIAMKLS 250



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE++  +  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDE 112


>gi|116326478|ref|YP_803198.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
 gi|115344071|gb|ABI95080.1| DNA topoisomerase subunit [Enterobacteria phage RB32]
          Length = 442

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 173/432 (40%), Gaps = 50/432 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K       ++ KDT ++ P +      P    L    P VL+NG  GIA G AT I
Sbjct: 120 ARVSK----NFYNVYKDT-EYAPVHQDKEHIPPAFYLPI-IPTVLLNGVSGIATGYATYI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIV 249
             H++  V    +  +    +        +  P+F      I G+  I+  Y        
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + KI + + +K         D     G+ 
Sbjct: 224 -----------TSRTQMHITEIPYKYDRETYVSKILDPLEDK---GFITWDDACGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVA 363
             ++ ++      + +    ++ +   L    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYFLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSW 422
            R+  V +R    + +            +A A    + ++I      +   R+EL +   
Sbjct: 330 VRKTYVQKRIDNKIKETES------AFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELS 383

Query: 423 NASDIKDLIDLI 434
                   +D +
Sbjct: 384 KIDMYSSYVDKL 395


>gi|215480285|gb|ACJ67487.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480289|gb|ACJ67489.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480301|gb|ACJ67495.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480303|gb|ACJ67496.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480307|gb|ACJ67498.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480309|gb|ACJ67499.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480345|gb|ACJ67517.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480357|gb|ACJ67523.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480359|gb|ACJ67524.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 189/294 (64%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|121511874|gb|ABM55388.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
 gi|121511876|gb|ABM55389.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 60/320 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ +    +  +V
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKIMAIIPTPDFD---ESKSLV 117

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRF 708
           F T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF
Sbjct: 118 FFTRNGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRF 177

Query: 709 PISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            +   R   GR++ GVRGI      D V+   ++ + +                      
Sbjct: 178 ELEKTRD-QGRSTRGVRGIKFKIDTDIVVDADVIDNEE---------------------- 214

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 215 ------------------------------QEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVSKINEIGALVAVFPV 847
            A  +S   + G +V    V
Sbjct: 245 IAMKLSP--KTGNIVGEVLV 262



 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 55/251 (21%), Positives = 100/251 (39%), Gaps = 12/251 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRADEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++   + Q+I+  +  G   R     
Sbjct: 122 NGVIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPV-NDNDQIILVSDKGTLIRVPVNEIRIASR 875
            R   RS +G+R        +   +V    + N+  +I+ VS+KG   R  + E R+ +R
Sbjct: 182 TRDQGRSTRGVRGIKFKI--DTDIVVDADVIDNEEQEILTVSEKGIGKRTTIEEYRLTNR 239

Query: 876 ATKGVVIFSTA 886
           A  GV+    +
Sbjct: 240 AGSGVIAMKLS 250



 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE++  +  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRADEKI--MAIIPTPDFDE 112


>gi|193794294|gb|ACF21359.1| DNA gyrase subunit A [Actinomyces oris]
          Length = 188

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 135/189 (71%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           +D+VDF+ NYDG  QEPV+L +R+PN+LVNG  GIAVGMAT IP HNL EV  G    ++
Sbjct: 1   EDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIPPHNLREVARGAQWYLE 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +PD   + L++     I GPDFPTGA ILGR GI++AY TGRGSI  R V ++E+    R
Sbjct: 61  HPDASREELLDALIERIPGPDFPTGATILGRRGIEDAYRTGRGSITQRAVVNVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ ++  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ +
Sbjct: 180 VLNNLYKRS 188


>gi|224458676|gb|ACN43201.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 134/294 (45%), Positives = 188/294 (63%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY TGRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYETGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G RVVIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRVVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|7682360|gb|AAF67235.1|AF144784_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|7682362|gb|AAF67236.1|AF144785_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  196 bits (498), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREP 91


>gi|228861192|ref|YP_002854215.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
 gi|227438866|gb|ACP31178.1| gp52 DNA topoisomerase subunit [Enterobacteria phage RB51]
          Length = 442

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 173/432 (40%), Gaps = 50/432 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K       ++ KDT ++ P +      P    L    P VL+NG  GIA G AT I
Sbjct: 120 ARVSK----NFYNVYKDT-EYAPVHQDKEHIPPAFYLPI-IPTVLLNGVSGIATGYATYI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIV 249
             H++  V    +  +    +        +  P+F      I G+  I+  Y        
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + KI + + +K         D     G+ 
Sbjct: 224 -----------TSRTQMHITEIPYKYDRETYVSKILDPLEDK---GFITWDDACGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVA 363
             ++ ++      + +    ++ +   L    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSW 422
            R+  V +R    + +            +A A    + ++I      +   R+EL +   
Sbjct: 330 VRKTYVQKRIDNKIKETES------AFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELS 383

Query: 423 NASDIKDLIDLI 434
                   +D +
Sbjct: 384 KIDMYSSYVDKL 395


>gi|224458690|gb|ACN43208.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458694|gb|ACN43210.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 134/294 (45%), Positives = 189/294 (64%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|224458692|gb|ACN43209.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 188/294 (63%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR 
Sbjct: 121 GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|24020926|gb|AAN40858.1| ParC [Streptococcus mitis]
 gi|24020932|gb|AAN40861.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 74/104 (71%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|124108739|gb|ABM90946.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 93

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/92 (61%), Positives = 72/92 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  DSAAAMRYTEIRLAKIAHGLMADLKKETVDFV 93


>gi|311993520|ref|YP_004010385.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
 gi|295917477|gb|ADG60148.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Acj9]
          Length = 447

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/469 (21%), Positives = 181/469 (38%), Gaps = 51/469 (10%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM-GKYHPHGN 90
           YA+  +  RAIP+L DGLKPV R +L+  +Q+    + K+ K A ++G V    YH HG 
Sbjct: 19  YAMYTVENRAIPNLIDGLKPVQRFMLYRAIQLAKGKSDKFHKLASVAGGVADAGYH-HGE 77

Query: 91  AAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDT 150
            +  +A A MA  W+     ++GQGNFGS      AA RY  CR+        + + KDT
Sbjct: 78  NSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQQAAASRYIFCRVS----ENFNKVYKDT 133

Query: 151 VDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            +  P ++     P    L    P VL+NG  GIA G +T+I  H+   +V      ++ 
Sbjct: 134 -EIAPEHEDLEHLPPRFYLPI-IPTVLLNGVRGIATGYSTSILPHDFESIVRCTEQALNG 191

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
             +     M  +  P F               Y T      + G  +       + Q+ +
Sbjct: 192 ETVS----MPTVAFPQFRG-----------EVYCTEPNKYELHGTYNF----TSKTQMYI 232

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA----SADVIL 324
           +EIPYQ ++A  +EK+ + + +     +    D+  ++G+   I+ ++          + 
Sbjct: 233 SEIPYQFDRAKYVEKVLDPLED---AGLITYDDDCSKEGFGFKIKFRKDYKLPTDVTELD 289

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
            ++ R   L    S N+V ++              +++ FV  R   V +R  +      
Sbjct: 290 EKIKRDFKLVERVSQNIVVIDENGKLHDRFENSAQLVEHFVKVRLSFVEKRIGF---MIE 346

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
              H           + EV              +   ++     +    +  +      +
Sbjct: 347 KSKHAFELAYAKALFIREV---------TNEKIQVKGKKRSELKEELAQLPALAGFEDQL 397

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
            +    +++E +   +L+        +      + L     +IKE   I
Sbjct: 398 LAMNIFHMTEDEMANLLKKAKEAKEQMDYWKSTDALTEYKNDIKELKSI 446


>gi|24020928|gb|AAN40859.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/104 (53%), Positives = 74/104 (71%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M + G  ++K Y K A+  G +MG +HPHG+A+IYDA+ RM+QDW  R +L+E  
Sbjct: 1   RILYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDASIYDAMVRMSQDWKNREILVEMH 60

Query: 115 GNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           GN GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  GNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 104


>gi|112383286|gb|ABI17783.1| gyrase [Streptococcus suis]
 gi|112383288|gb|ABI17784.1| gyrase [Streptococcus suis]
 gi|112383290|gb|ABI17785.1| gyrase [Streptococcus suis]
 gi|112383292|gb|ABI17786.1| gyrase [Streptococcus suis]
 gi|112383294|gb|ABI17787.1| gyrase [Streptococcus suis]
 gi|112383296|gb|ABI17788.1| gyrase [Streptococcus suis]
 gi|112383298|gb|ABI17789.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG++AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|215480321|gb|ACJ67505.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480333|gb|ACJ67511.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 189/294 (64%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|224458696|gb|ACN43211.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 190/294 (64%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL+ +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELMEIKERFNDERRTEI 268


>gi|7682364|gb|AAF67237.1|AF144786_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 92

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 72/91 (79%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RMSKIALEILRDINKNTVDFVDNYDANEREP 91


>gi|299779202|ref|YP_003734396.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
 gi|298105931|gb|ADI55575.1| gp52 topoisomerase II medium subunit [Enterobacteria phage IME08]
          Length = 460

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/403 (24%), Positives = 172/403 (42%), Gaps = 40/403 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +   T   +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ 
Sbjct: 18  DDAFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFH 77

Query: 73  KCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           K A I+G V  +G YH HG  +  +A A MA  W+    L++GQGNFGS      AA RY
Sbjct: 78  KLASIAGGVADLG-YH-HGEGSAQEAGALMANTWNNNYPLLDGQGNFGSRLVQKAAASRY 135

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMAT 188
              R+          + KDT ++ P +     +P    L    P VL+NG  GIA G AT
Sbjct: 136 IFARI----GSNFAKVYKDT-EYAPVHADVEHKPPAFYLPI-IPTVLLNGVSGIATGYAT 189

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NI  H+   V    + V+    +        +  P+F           I+       GS 
Sbjct: 190 NILPHSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRGE-----VVEIEP------GSY 234

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            IRG          R Q+ +TEIPY+ ++   + KI + + +K         D+ D  G+
Sbjct: 235 EIRGTYKF----TSRTQMHITEIPYKYDRETYVAKILDPLEDK---GYITYDDDCDENGF 287

Query: 309 RVVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFV 362
              +++++        +    ++ +   L    S N+  +N           + +++ FV
Sbjct: 288 GFKVKIRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDAVELIRDFV 347

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             R+  V +R    + +  +   + +  A  + ++ + V +I+
Sbjct: 348 EVRKTFVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQ 390


>gi|116194666|ref|XP_001223145.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
 gi|88179844|gb|EAQ87312.1| hypothetical protein CHGG_03931 [Chaetomium globosum CBS 148.51]
          Length = 1715

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 100/490 (20%), Positives = 188/490 (38%), Gaps = 37/490 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++++G  +  +  +    K A ++G +  +  YH HG  ++   +
Sbjct: 798  RSIPSMVDGLKPGQRKVIYGAFKRNLVND---QKVAELAGYISEVAAYH-HGEVSLQQTI 853

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  +++
Sbjct: 854  VGLAQTYVGSNNVNCLEPSGNFGSRLSGGSDAASARYIHTRLSPFARRIFSKLDEPNLEY 913

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG+  EP V     P VLVNG  GI  G +T+IP ++  E+VD     +   D + 
Sbjct: 914  QFD-DGNMIEPKVYVPILPMVLVNGADGIGTGWSTSIPNYHPIEIVDNLKRRMGRLDPED 972

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                       +       G  G+    + G       G+   ++ + +   I VTE+P 
Sbjct: 973  SEEKAFKPMTPW-----FRGWKGVLE--SDGPNRYKFNGIIQQDEQNPNE--IHVTELPI 1023

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            ++       K+ +++R ++      D R+ +D Q    +I+++       +   L     
Sbjct: 1024 RMWTDDFKSKLEDILRAEKTPSFIKDYREFNDHQTVHFIIDMEDKHMKAALDEGLLEKFK 1083

Query: 333  LQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            L    +   +     +    +      I++ F  +R  +   R K+ L            
Sbjct: 1084 LSKSMTTTNLVAFNTRGQIHKYENPEEIMEEFYHYRFNMYTERKKHWLGVYHAD---YRK 1140

Query: 390  LAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNA-SDIKDLIDLIDDSSYTIGSDGT 446
            L      + E++  ++I      +   +EL  R + A     D      D          
Sbjct: 1141 LKNQYRFILEIIENKLIVNKKKKDVLVQELRDRKYEAFPPKDDKKSKSTDEELGKDDAED 1200

Query: 447  MYLSE--VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               S        +L + +  LT    + ++N++ +   E         S   L     ++
Sbjct: 1201 EDTSNGARDYDYLLSMPIWSLTNERLEKLKNQIAAKKAE--HDELDALSEKDLW---IKD 1255

Query: 505  LLSVKDELDT 514
            L    DE  T
Sbjct: 1256 LDEFVDEWHT 1265


>gi|327349241|gb|EGE78098.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1804

 Score =  195 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 189/495 (38%), Gaps = 43/495 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   ++ V+ +   +K A +SG V+G   Y  HG+A++   +
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNVKKD---MKVAELSGYVLGLTAYQ-HGDASLQQTI 862

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + +
Sbjct: 863  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLLTY 922

Query: 154  RPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + DG   EP        P +L+NG  GI  G +T+IP +N  E+V     ++      
Sbjct: 923  NVD-DGQVIEPETYFPV-VPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGE--- 977

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P  P      G TG     + G       G            +I +TE+P
Sbjct: 978  ----------PVVPMQPWFRGFTG--EVVSMGGERYKFSGRFS----QIGDNEIEITELP 1021

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQL---Y 328
             +       +++ E+++ ++I     D +D +       VI+L    +   I   L    
Sbjct: 1022 IRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKL 1081

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH--- 385
            + T   +  ++      G   +  +   IL+ F + R ++  +R ++ L++ +       
Sbjct: 1082 KLTKTLATSNLVAFDSEGRITKYESPEHILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLS 1141

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
                    + +   V+     +   +  + +  +     SD     +     +       
Sbjct: 1142 NQARFVQMIIDGKLVISKKPKAQLVQELKEKGFKAIAKVSDAAKQGEKAPVVNRDDEESS 1201

Query: 446  TMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                +E+       +L + L  LT    + +R ++    IEI   + +          + 
Sbjct: 1202 DSEDTELAANSFDYLLGMPLWSLTKERVEKLRRQIGDKEIEIDTLIKLSK-EDIWRADLD 1260

Query: 503  QELLSVKDELDTPRR 517
              L   K +L+   R
Sbjct: 1261 AFLEEWKFQLEDEGR 1275


>gi|124108725|gb|ABM90939.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|194360501|gb|ACF57898.1| DNA gyrase A subunit [Actinomyces odontolyticus]
          Length = 188

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 103/189 (54%), Positives = 132/189 (69%), Gaps = 6/189 (3%)

Query: 148 KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
           ++ VDF+ NYDG  QEP +L AR+PN+L NG  GIAVGMAT IP HNL E+  G    +D
Sbjct: 1   EECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPHNLRELARGVEWALD 60

Query: 208 NPDIDLDALME----IIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
           +P+   + L+E    +I GPDFPTGA ILGR GI++AY TGRGSI  R V  +E+    R
Sbjct: 61  HPEATREELLEALIKLIPGPDFPTGATILGRKGIEDAYRTGRGSITQRAVVSVEEIQ-GR 119

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADV 322
           + +VVTE+PYQVN   + +KIA+LVR+ +I  IAD+RDE S R G R+VI LKR A A V
Sbjct: 120 QCLVVTELPYQVNPDNLADKIAQLVRDGQIGGIADIRDETSGRTGQRLVIVLKRDAVAKV 179

Query: 323 ILNQLYRYT 331
           +LN LY+ T
Sbjct: 180 VLNNLYKRT 188


>gi|239610333|gb|EEQ87320.1| DNA topoisomerase 2 [Ajellomyces dermatitidis ER-3]
          Length = 1804

 Score =  195 bits (496), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/495 (19%), Positives = 189/495 (38%), Gaps = 43/495 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   ++ V+ +   +K A +SG V+G   Y  HG+A++   +
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNVKKD---MKVAELSGYVLGLTAYQ-HGDASLQQTI 862

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + +
Sbjct: 863  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLLTY 922

Query: 154  RPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + DG   EP        P +L+NG  GI  G +T+IP +N  E+V     ++      
Sbjct: 923  NVD-DGQVIEPETYFPV-VPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGE--- 977

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P  P      G TG     + G       G            +I +TE+P
Sbjct: 978  ----------PVVPMQPWFRGFTG--EVVSMGGERYKFSGRFS----QIGDNEIEITELP 1021

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQL---Y 328
             +       +++ E+++ ++I     D +D +       VI+L    +   I   L    
Sbjct: 1022 IRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVIQLDEKHAKKAIAEGLEEKL 1081

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH--- 385
            + T   +  ++      G   +  +   IL+ F + R ++  +R ++ L++ +       
Sbjct: 1082 KLTKTLATSNLVAFDSEGRITKYESPEHILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLS 1141

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
                    + +   V+     +   +  + +  +     SD     +     +       
Sbjct: 1142 NQARFVQMIIDGKLVISKKPKAQLVQELKEKGFKAIAKVSDAAKQGEKAPVVNRDDEESS 1201

Query: 446  TMYLSEVQT---RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                +E+       +L + L  LT    + +R ++    IEI   + +          + 
Sbjct: 1202 DSEDTELAANSFDYLLGMPLWSLTKERVEKLRRQIGDKEIEIDTLIKLSK-EDIWRADLD 1260

Query: 503  QELLSVKDELDTPRR 517
              L   K +L+   R
Sbjct: 1261 AFLEEWKFQLEDEGR 1275


>gi|313192264|emb|CBY05940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 71/91 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 64  SAAAMRYTEIRLAKIAHELMADLEKETVDFV 94


>gi|224458680|gb|ACN43203.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|224458684|gb|ACN43205.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 131/294 (44%), Positives = 187/294 (63%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+ +VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANGNVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|10121857|gb|AAG13401.1|AF285155_1 topoisomerase II alpha-2 [Gallus gallus]
          Length = 1586

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 110/478 (23%), Positives = 192/478 (40%), Gaps = 47/478 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG A++   
Sbjct: 748  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKGAQLAGSVAEMSSYH-HGEASLMMT 803

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 804  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLR 863

Query: 153  FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            F   YD + + EP   +    P VL+NG  GI  G +  IP  ++ E V+    ++D  +
Sbjct: 864  FL--YDDNQRVEPEWYMPI-IPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE 920

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                        P  P+     G          G    VI G    E +  D   I +TE
Sbjct: 921  ----------PLPMLPSYKNFKGTID-----ELGPNQYVISG----EVSILDSTTIEITE 961

Query: 271  IPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E++ E +     K    I D ++       + V+++     A+     L
Sbjct: 962  LPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGL 1021

Query: 328  YRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L    G+  +  +   ILK F   R      R ++L+      A
Sbjct: 1022 HKVFKLQTNLTCNSMVLFDHVGFLKKYESPQDILKEFFELRLRYYGLRKEWLIGMLG--A 1079

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I     P+    + L+QR + +  +K   +L +        
Sbjct: 1080 ESAKLNNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDPVKAWKELQNKEEEEGDE 1139

Query: 444  DGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             G      +      +L + L  LT   +D++  + ++   E+++      S S L  
Sbjct: 1140 SGEESAAATGPDFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLK--HKSPSDLWK 1195


>gi|308235539|ref|ZP_07666276.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018]
          Length = 245

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 124/287 (43%), Gaps = 63/287 (21%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSR-------DEIL 685
           +       +     Y+V AT+ G V++  L ++    + G IA++L +        DE++
Sbjct: 1   MQAVLSIPNYDVAKYLVLATRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADELI 60

Query: 686 SVETCTQENDILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGISLAKGDQVISMAIVLH 743
               C  E+DI+L +KLG  ++F      +R   GR + GV+G+   + D+++ M +V  
Sbjct: 61  GAALCNSEDDIILVSKLGMSLKFRADDEQLRPM-GRQTAGVQGMRFREDDELLDMDVVS- 118

Query: 744 ADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV 803
                                                                 + +L V
Sbjct: 119 --------------------------------------------------VETSKDLLVV 128

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLI 863
           + +GF KRT+  ++R+  R+G G++A  +++    G+LV    V + DQ++ +   G +I
Sbjct: 129 TNEGFAKRTAIEEYRLQGRNGYGVKAVQLAEG--RGSLVGALIVEETDQVMAIMKSGKVI 186

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R  VNE++   R T+GV +    K + ++S+ R  E +   + ++ E
Sbjct: 187 RSDVNEVKRTGRTTQGVTLAKPDKGDEIISIARNEERDDESDNKNEE 233



 Score = 71.0 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE-----DFVTDLFIVSTHTSVLFFSSLGF 597
           +  G VK+  L  Y + R+GG     ++  +E     D +    + ++   ++  S LG 
Sbjct: 20  TRSGKVKKTALQEYDSPRQGGLIAVRLMTNEETGEPADELIGAALCNSEDDIILVSKLGM 79

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
             K +     +  P  R  A +  +   + + +  +     +     +  ++  T  G  
Sbjct: 80  SLKFRADDEQL-RPMGRQTAGVQGMRFREDDELLDMDVVSVET----SKDLLVVTNEGFA 134

Query: 658 RRNKLSDF--IQINRSGKIAMKLDSR-DEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
           +R  + ++     N  G  A++L      ++      + + ++   K G+ +R  ++ ++
Sbjct: 135 KRTAIEEYRLQGRNGYGVKAVQLAEGRGSLVGALIVEETDQVMAIMKSGKVIRSDVNEVK 194

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
              GR + GV      KGD++IS+A     D + D +   ++  +++R L  
Sbjct: 195 -RTGRTTQGVTLAKPDKGDEIISIARNEERDDESDNKNEEVEENTSRRNLDE 245


>gi|330858778|ref|YP_004415153.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
 gi|327397712|gb|AEA73214.1| putative DNA topoisomerase subunit [Shigella phage Shfl2]
          Length = 442

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 100/432 (23%), Positives = 172/432 (39%), Gaps = 50/432 (11%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L YA+  +  RAIP++ DG KPV R ++   + +      K+ K 
Sbjct: 2   QLNNRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  DA A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+ K        + KDT ++ P +      P    L    P VL+NG  GIA G AT I
Sbjct: 120 ARVSK----NFYSVYKDT-EYAPVHQDKEHIPPAFYLPI-IPTVLLNGVSGIATGYATYI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG-AVILGRTGIKNAYATGRGSIV 249
             H++  V    +  +    +        +  P+F      I G+  I+  Y        
Sbjct: 174 LPHSVSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKF------ 223

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                        R Q+ +TEIPY+ ++   + KI + + +K         D     G+ 
Sbjct: 224 -----------TSRTQMNITEIPYKYDRETYVSKILDPLEDK---GFITWDDACGEHGFG 269

Query: 310 VVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVA 363
             ++ ++      + +    ++ +   L    S N+  +N          ++ ++K FV 
Sbjct: 270 FKVKFRKEYSLSDNEEERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVE 329

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSW 422
            R+  V +R    + +            +A A    + ++I      +   R+EL +   
Sbjct: 330 VRKTYVQKRIDNKIKETES------AFRLAFAKAHFIKKVISGEIVVQGKTRKELTEELS 383

Query: 423 NASDIKDLIDLI 434
                   +D +
Sbjct: 384 KIDMYSSYVDKL 395


>gi|149234581|ref|XP_001523170.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
 gi|146453279|gb|EDK47535.1| DNA topoisomerase 2 [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1492

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 93/520 (17%), Positives = 177/520 (34%), Gaps = 48/520 (9%)

Query: 8    SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              +  +  +  + I+D +    + ++++  + R+IP + DGLKP  R+IL+G  +  +  
Sbjct: 738  PGDNLDPEMNEIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKL-- 794

Query: 68   NKKYVKCARI---SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
             K  +K A++     +V   YH HG  ++   +  MAQ++  S  + L++  G FGS   
Sbjct: 795  -KNEIKVAQLAAYVADV-SSYH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRAT 851

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLV 176
             G   AA RY    L +    + ++      D   NY   D S  EP   L    P +LV
Sbjct: 852  GGKDAAAARYIFTELNEITRTIFNEAD----DPLLNYLQDDESTVEPQWYLPV-LPMILV 906

Query: 177  NGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG 236
            NG  GI  G +TNIP++N  ++V     ++    ++   +    +G             G
Sbjct: 907  NGADGIGTGWSTNIPSYNPLDIVANLRRLMRGEPME--EMNPWYKG-----------WYG 953

Query: 237  IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI 296
                   G     I G         D   I ++E+P +     + E +   +  ++ V  
Sbjct: 954  DIE--KVGPQKFKISGRIE----QIDDNTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQW 1007

Query: 297  ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
                +E      R V++L     A  +   L     L S  S+  +            + 
Sbjct: 1008 IKDMEEQHTTSIRFVVKLSDAEMAKALSVGLLEKFKLVSTISLANMVAFDPHGRIKKYLD 1067

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            +L     F    +           + + H+L  L    + + E  R I+   + + +   
Sbjct: 1068 VLDIVKDFYFVRLEY-------YEKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVAN 1120

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
              ++        +           I         + +   +++               + 
Sbjct: 1121 KKKKELIGILEANKFLKFTKDGRPIEQVVVDDDDDDEDEDVIDGAGGAGVDGIAGGEADI 1180

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
                  E+ E          +       L      L   R
Sbjct: 1181 SQLNLKEVDENPTNEHRPETVSSSYDYILGMTIWSLTHER 1220


>gi|65431631|gb|AAY42593.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  195 bits (495), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 61/86 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYT 131
           LR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|94467527|dbj|BAE93905.1| DNA gyrase subunit A [Proteus mirabilis]
          Length = 90

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 68/90 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + R+AQ +S+R +L++GQGN
Sbjct: 1   LFAMNVLGNDWNKPYKKSARVVGDVIGKYHPHGDIAVYKTIVRLAQPFSMRYMLVDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           FGSVDGD  AA RYTE R+ K AH LL DL
Sbjct: 61  FGSVDGDSAAAMRYTEVRMAKIAHELLADL 90


>gi|121511880|gb|ABM55391.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 262

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 106/320 (33%), Positives = 168/320 (52%), Gaps = 60/320 (18%)

Query: 530 EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV 589
           ED I  E MVVT++H GYVKRVP+  Y  Q+RGGKG+  V   D+DF+   F+ +TH ++
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTL 60

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
           +F +++G +Y  KV+++P GS  A+GKA++N+++L   E+I  I+P P+ +    +  +V
Sbjct: 61  MFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKIMAIIPTPDFD---ESKSLV 117

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT-QENDILLTTKLGQCVRF 708
           F T++G ++R  L++F  I  +G  A+ LD  DEI++ +    Q   I++ T LGQC+RF
Sbjct: 118 FFTRNGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRF 177

Query: 709 PISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            +   R   GR++ GVRGI      D V+   ++   +                      
Sbjct: 178 ELEKTRD-QGRSTRGVRGIKFKIDTDIVVYADVIDSEE---------------------- 214

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                                         Q ILTVSEKG GKRT+  ++R++NR+G G+
Sbjct: 215 ------------------------------QEILTVSEKGIGKRTTIEEYRLTNRAGSGV 244

Query: 828 RATDVSKINEIGALVAVFPV 847
            A  +S   + G +V    V
Sbjct: 245 IAMKLSP--KTGNIVGEVLV 262



 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 12/251 (4%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTT 700
            N   VV  T +G V+R  +  + +  R   GK+A+     D I         + ++  T
Sbjct: 5   PNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVT 64

Query: 701 KLGQCVRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
            +GQ     +  I     R + G   V  I+L   +++  MAI+   D D  + + +   
Sbjct: 65  NMGQLYWLKVYKI-PEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDESKSLVFFTR 121

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKL-KEQFILTVSEKGFGKRTSSYD 816
               +R    +   I S    + V  +  E    ++   + Q+I+  +  G   R     
Sbjct: 122 NGIIKRTSLNEFSNIRSNGVRAIVLDDADEIVTAKIADVQTQYIMIFTSLGQCIRFELEK 181

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASR 875
            R   RS +G+R        +   +V    ++ +  +I+ VS+KG   R  + E R+ +R
Sbjct: 182 TRDQGRSTRGVRGIKFKI--DTDIVVYADVIDSEEQEILTVSEKGIGKRTTIEEYRLTNR 239

Query: 876 ATKGVVIFSTA 886
           A  GV+    +
Sbjct: 240 AGSGVIAMKLS 250



 Score = 91.0 bits (224), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
           ++L   E  ++T++  G+ KR     +    R GKG  A      + I      F  N +
Sbjct: 1   EDLIPNEPMVVTITHNGYVKRVPIKSYERQKRGGKGKVAVTTHDDDFIER---FFVSNTH 57

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           D ++ V++ G L  + V +I   SR  KG   V + +   DE++  +  I   +  +
Sbjct: 58  DTLMFVTNMGQLYWLKVYKIPEGSRTAKGKAVVNLINLRPDEKI--MAIIPTPDFDE 112


>gi|124108763|gb|ABM90958.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108765|gb|ABM90959.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/90 (63%), Positives = 70/90 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           A RYTE RL K AH L+ DL K+TVDF  N
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVDN 90


>gi|65431749|gb|AAY42594.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 86

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 62/86 (72%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY+ L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAERYT 131
           LR  L++GQGNFGS   DPPAA RYT
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMRYT 86


>gi|124108745|gb|ABM90949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 2   GHDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  SAAAMRYTEIRLAKIAHGLMADLKKETVDFV 92


>gi|313192270|emb|CBY05943.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 59/95 (62%), Positives = 72/95 (75%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVFGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
             AA RYTE RL K AH L+ DL K+TVDF   YD
Sbjct: 64  SAAAMRYTEIRLAKIAHELMADLKKETVDFLGYYD 98


>gi|124108727|gb|ABM90940.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  195 bits (494), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 70/88 (79%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFR 154
           A RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|171683279|ref|XP_001906582.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941599|emb|CAP67253.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1767

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 164/430 (38%), Gaps = 25/430 (5%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            +S +  +QN ++ +++   + R+IP + DG KP  R++++   +  +  +    K   ++
Sbjct: 788  ISYSQFLQNEFILFSMADNI-RSIPSMIDGFKPGQRKVIYSAFKRNLVND---QKVVELA 843

Query: 79   GEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTE 132
            G +  +  YH HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A+ RY  
Sbjct: 844  GYISEQAAYH-HGEQSLQQTIIGLAQTFVGSNNVNCLEPSGNFGSRLSGGKDSASARYIH 902

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
             RL   A  +   L +  ++++ + DG+  EP V     P VLVNG  GI  G +T+IP 
Sbjct: 903  TRLSPFARKVFSKLDEPNLEYQFD-DGNMIEPKVYAPILPMVLVNGADGIGTGWSTSIPN 961

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
            ++   +V+     +   D D       +    +       G  G               G
Sbjct: 962  YHPMHIVENLRRRMGRFDPDDTEEKPFVPMAPW-----WRGWKGTPE--QEAPNKWRFNG 1014

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVV 311
            +   ++ + +   I VTE+P ++       K+ ++++  +      D ++ +D +    +
Sbjct: 1015 IIRQDEQNPNE--IHVTELPIRMWTDDFKAKLEDIIQNDKTPTFIKDYKEFNDHKTVHFI 1072

Query: 312  IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
            I++        +   L     L +  S   +     + +      + +    +    +  
Sbjct: 1073 IDMDEKHREAALREGLLEKFKLTTTVSTTNLVAFDTQGKIRKYDNVEEIMEEYYHYRLKM 1132

Query: 372  RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
             T+   +  +        L      + E   II         ++ ++ +     D +   
Sbjct: 1133 YTERKKHWLKVYHADYRKLKNQYRFITE---IIDNKMVVNRKKKAVLVQELRDRDYEAFP 1189

Query: 432  DLIDDSSYTI 441
               D    + 
Sbjct: 1190 PKEDKKVKSP 1199


>gi|225555588|gb|EEH03879.1| DNA topoisomerase II [Ajellomyces capsulatus G186AR]
          Length = 1716

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 97/497 (19%), Positives = 191/497 (38%), Gaps = 41/497 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V+ +   VK A +SG V+G   Y  HG  ++   +
Sbjct: 715  RSIPSVVDGLKPGQRKVLYTCFKRNVKKD---VKVAELSGYVLGMTAYQ-HGEQSLQQTI 770

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + +
Sbjct: 771  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTY 830

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V     ++       
Sbjct: 831  NVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGE---- 885

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 886  ---------PLVPMEPWFRGFTG--EVVSMGGERYKFSGRIS----QIGDNEVEITELPI 930

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       +I+L    +   I   L     
Sbjct: 931  RSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFK 990

Query: 333  LQSLFSVNMVALNGYKPERFTL---IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            L    + + +     +           IL+ F + R ++  +R ++ L++ +     +  
Sbjct: 991  LTKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTN 1050

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-- 447
             A  V  + +   +I   P  +  R    +     + + D     +++      +     
Sbjct: 1051 QARFVQMIIDGKFVISKKPKAQLVRELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGE 1110

Query: 448  --YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG-IIKQE 504
               ++      +L + L  LT    + +R ++     EI     I  S+  +    +   
Sbjct: 1111 DTQIAANSYDYLLGMPLWSLTKERVEKLRRQIGDKETEID--TLIKLSKEDIWTADLDDF 1168

Query: 505  LLSVKDELDTPRRTRIV 521
            L   K +L+   R +  
Sbjct: 1169 LAEWKFQLEDEERRQTK 1185


>gi|215480341|gb|ACJ67515.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 276

 Score =  195 bits (494), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 133/294 (45%), Positives = 189/294 (64%), Gaps = 26/294 (8%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE 286
           T   ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+
Sbjct: 1   TAGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIAD 60

Query: 287 LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG 346
           LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL  
Sbjct: 61  LVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVD 120

Query: 347 YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
            +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR 
Sbjct: 121 GQPKVLTLKKCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRN 180

Query: 407 SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLT 466
           S   E AR  L+++                            L+E Q +AIL++RL RLT
Sbjct: 181 SQTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLT 214

Query: 467 GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           GL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 GLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 268


>gi|215480283|gb|ACJ67486.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480287|gb|ACJ67488.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480293|gb|ACJ67491.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480295|gb|ACJ67492.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480297|gb|ACJ67493.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480299|gb|ACJ67494.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480305|gb|ACJ67497.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480343|gb|ACJ67516.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480351|gb|ACJ67520.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480355|gb|ACJ67522.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 132/293 (45%), Positives = 188/293 (64%), Gaps = 26/293 (8%)

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
              ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+L
Sbjct: 1   AGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADL 60

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           VR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   
Sbjct: 61  VRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDG 120

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S
Sbjct: 121 QPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNS 180

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
              E AR  L+++                            L+E Q +AIL++RL RLTG
Sbjct: 181 QTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTG 214

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 LEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 267


>gi|19526749|gb|AAL89785.1|AF487420_1 DNA gyrase [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 92

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 70/91 (76%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           AA RYTE RL K AH L+ DL K+TVDF   
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVDFVDT 91


>gi|154270939|ref|XP_001536323.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
 gi|150409546|gb|EDN04990.1| DNA topoisomerase 2 [Ajellomyces capsulatus NAm1]
          Length = 1808

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/500 (19%), Positives = 191/500 (38%), Gaps = 48/500 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V+ +   VK A +SG V+G   Y  HG  ++   +
Sbjct: 811  RSIPSVVDGLKPGQRKVLYTCFKRNVKKD---VKVAELSGYVLGMTAYQ-HGEQSLQQTI 866

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + +
Sbjct: 867  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTY 926

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V     ++       
Sbjct: 927  NVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGE---- 981

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 982  ---------PLVPMEPWFRGFTG--EVVSMGGERYKFSGRIS----QIGDNEVEITELPI 1026

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       +I+L    +   I   L     
Sbjct: 1027 RSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFK 1086

Query: 333  LQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            L     + N+VA +      +  ++  IL+ F + R ++  +R ++ L++ +     +  
Sbjct: 1087 LTKTIATSNLVAFDPEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTN 1146

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD----SSYTIGSDG 445
             A  V  + +   +I   P  +  R    +     + + D     ++             
Sbjct: 1147 QARFVQMIIDGKFVISKKPKAQLVRELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGE 1206

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-------ECLDILSSRSRLL 498
               ++      +L + L  LT    + +R ++     EI        E +        L 
Sbjct: 1207 DTEIAANSYDYLLGMPLWSLTKERVEKLRRQIGDKETEIDTLIKLSKEDIWTADLDDFLA 1266

Query: 499  GIIKQELLSVKDELDTPRRT 518
                Q     + +    +RT
Sbjct: 1267 EWKFQLEEEERQQ---TKRT 1283


>gi|310722590|ref|YP_003969413.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
 gi|306021433|gb|ADM79967.1| topoisomerase II medium subunit [Aeromonas phage phiAS5]
          Length = 438

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 100/463 (21%), Positives = 169/463 (36%), Gaps = 50/463 (10%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY-HPHG 89
            +A+  I  RA+P + DGLKPV R IL+ +++      K + K A I+G V+ +Y + HG
Sbjct: 18  EFAMYTIEERALPSMVDGLKPVQRYILYSVLK---NAGKSFKKNAAIAG-VISEYGYNHG 73

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDD---L 146
             A  DA   MA  W+    +I+GQGNFGS      AA RY  C        +  D   L
Sbjct: 74  EVAAMDAACLMASTWNNNFPIIQGQGNFGSRAVQEGAAARYIFCTKHDQFDSMFKDMELL 133

Query: 147 GKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
            + T       DGS      L    P VL+NG  GIA G AT I  H+L  V      V+
Sbjct: 134 EESTA------DGSELPRYYLPI-LPTVLLNGVSGIATGFATKILPHSLVSVAKCVEQVL 186

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
                D       I+ P F          G          +  + G   +      + ++
Sbjct: 187 KTGKCDEPQ----IQFPLF---------YGKITPVVDKNQAWTLEGCYEL----SGKTKL 229

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            ++EIP + ++   +  + +LV   +IV      DES         ++      D     
Sbjct: 230 TISEIPVKYDRVKYVTLLDKLVETDKIVGY----DESKMDDREFCFKITLKRDFDTSHEN 285

Query: 327 LYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           + +   L    S  +  ++             ++  FV +R  ++ +R    +       
Sbjct: 286 IIKTFKLAQNVSQYIRVIDQNGDLKPYEKASDLIVDFVNYRFGILQKRIDNAIVA----- 340

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                L  A A + E ++++         +     R      I+   D + D +  +   
Sbjct: 341 -TTEKLGYAQAKV-EFIKLVLDEK----IKFHKQTRKQVIEQIQAF-DSLKDYAEQLVQM 393

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              +++E +   + +               +       +IKE 
Sbjct: 394 NLYHMTEDELTKLEKQVTELTKENDFWKNTSPKKQYQSDIKEF 436


>gi|215536133|gb|ACJ68514.1| DNA gyrase subunit A [Klebsiella pneumoniae]
          Length = 94

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/94 (57%), Positives = 71/94 (75%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           + G+V+GKYHPHG+ A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL 
Sbjct: 1   VVGDVIGKYHPHGDYAVYFTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLA 60

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           K AH L+ DL K+TVDF  NYDG+ + P V+  +
Sbjct: 61  KIAHELMADLEKETVDFVDNYDGTERIPDVMPTK 94


>gi|190334100|gb|ACE73898.1| topoisomerase IV subunit A [Bartonella vinsonii]
          Length = 100

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 53/95 (55%), Positives = 73/95 (76%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           CARI G+VMGK+HPHG+A+IYDAL R+AQ +++R  LI+GQGNFG++DGD  AA RYTE 
Sbjct: 1   CARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLC 168
           R+ + A  LL+ + ++ +DFR  Y+   +EPVVL 
Sbjct: 61  RMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLP 95


>gi|7243957|gb|AAB46847.2| topoisomerase II subunit A [Coxiella burnetii]
          Length = 106

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 3/94 (3%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQD 103
            + DGLKPV RRI++ M ++G++   KY K AR  G+V+GK+HPHG+ A Y+A+  MAQ 
Sbjct: 14  HIADGLKPVQRRIVYAMSELGLKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQP 73

Query: 104 WSLRLLLIEGQGNFGSVDGDPP--AAERYTECRL 135
           +S R   ++GQGN+GS D DP   AA RYTE RL
Sbjct: 74  FSFRYPFVDGQGNWGSAD-DPKSFAAMRYTEARL 106


>gi|325089309|gb|EGC42619.1| DNA topoisomerase II [Ajellomyces capsulatus H88]
          Length = 1712

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 97/497 (19%), Positives = 189/497 (38%), Gaps = 41/497 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V+ +   VK A +SG V+G   Y  HG  ++   +
Sbjct: 715  RSIPSVIDGLKPGQRKVLYTCFKRNVKKD---VKVAELSGYVLGMTAYQ-HGEQSLQQTI 770

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + +
Sbjct: 771  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTY 830

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V     ++       
Sbjct: 831  NVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGE---- 885

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 886  ---------PLVPMEPWFRGFTG--EVVSMGGERYKFSGRIS----QIGDNEVEITELPI 930

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       +I+L    +   I   L     
Sbjct: 931  RSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFK 990

Query: 333  LQSLFSVNMVALNGYKPERFTL---IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            L    + + +     +           IL+ F + R ++  +R ++ L++ +     +  
Sbjct: 991  LTKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTN 1050

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD----SSYTIGSDG 445
             A  V  + +   +I   P  +  R    +     + + D     ++             
Sbjct: 1051 QARFVQMIIDGKFVISKKPKAQLVRELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGE 1110

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG-IIKQE 504
               ++      +L + L  LT    + +R ++     EI     I  S+  +    +   
Sbjct: 1111 DTEIAANSYDYLLGMPLWSLTKERVEKLRRQIGDKETEIN--TLIKLSKEDIWTADLDDF 1168

Query: 505  LLSVKDELDTPRRTRIV 521
            L   K +L+   R +  
Sbjct: 1169 LAEWKFQLEDEERRQTK 1185


>gi|17432729|gb|AAL39125.1|AF447053_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432731|gb|AAL39126.1|AF447054_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432733|gb|AAL39127.1|AF447055_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Adelaide]
 gi|17432735|gb|AAL39128.1|AF447056_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Brandenburg]
 gi|17432737|gb|AAL39129.1|AF447057_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Havana]
 gi|17432739|gb|AAL39130.1|AF447058_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|17432741|gb|AAL39131.1|AF447059_1 DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Hadar]
 gi|18389126|gb|AAL67622.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389128|gb|AAL67623.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389130|gb|AAL67624.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389132|gb|AAL67625.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389134|gb|AAL67626.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389136|gb|AAL67627.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389138|gb|AAL67628.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389140|gb|AAL67629.1| DNA gyrase subunit A [Escherichia coli]
 gi|18389142|gb|AAL67630.1| DNA gyrase subunit A [Escherichia coli]
          Length = 90

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|45382161|ref|NP_990122.1| DNA topoisomerase 2-alpha [Gallus gallus]
 gi|13959708|sp|O42130|TOP2A_CHICK RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|6714553|dbj|BAA22539.2| DNA topoisomeraseII_alpha [Gallus gallus]
          Length = 1553

 Score =  194 bits (493), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 111/478 (23%), Positives = 193/478 (40%), Gaps = 47/478 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG A++   
Sbjct: 713  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKGAQLAGSVAEMSSYH-HGEASLMMT 768

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 769  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPVDDNVLR 828

Query: 153  FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            F   YD + + EP   +    P VL+NG  GI  G +  IP  ++ E V+    ++D  +
Sbjct: 829  FL--YDDNQRVEPEWYMPI-IPMVLINGAEGIGTGWSCKIPNFDIRETVNNIRCLLDGKE 885

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                        P  P+     G          G    VI G    E +  D   I +TE
Sbjct: 886  ----------PLPMLPSYKNFKGTID-----ELGPNQYVISG----EVSILDSTTIEITE 926

Query: 271  IPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E++ E +    EK    I D ++       + V+++     A+     L
Sbjct: 927  LPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVVKMSEEKLAEAEAVGL 986

Query: 328  YRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L    G+  +  +   ILK F   R      R ++L+      A
Sbjct: 987  HKVFKLQTNLTCNSMVLFDHVGFLKKYESPQDILKEFFELRLRYYGLRKEWLIGMLG--A 1044

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETA-RRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I     P+    + L+QR + +  +K   +L +        
Sbjct: 1045 ESAKLNNQARFILEKIDGKIVIENKPKKELIQVLIQRGYESDPVKAWKELQNKEEEEGDE 1104

Query: 444  DGTMY--LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             G      +      +L + L  LT   +D++  + ++   E+++      S S L  
Sbjct: 1105 SGEESAAATGPDFNYLLNMPLWYLTKEKKDELCKQRDNKDKELEDLK--HKSPSDLWK 1160


>gi|215480323|gb|ACJ67506.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480325|gb|ACJ67507.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480337|gb|ACJ67513.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 132/293 (45%), Positives = 188/293 (64%), Gaps = 26/293 (8%)

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
              ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+L
Sbjct: 1   AGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADL 60

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           VR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   
Sbjct: 61  VRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDG 120

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S
Sbjct: 121 QPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNS 180

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
              E AR  L+++                            L+E Q +AIL++RL RLTG
Sbjct: 181 QTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTG 214

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 LEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 267


>gi|71030782|ref|XP_765033.1| DNA topoisomerase II [Theileria parva strain Muguga]
 gi|68351989|gb|EAN32750.1| DNA topoisomerase II, putative [Theileria parva]
          Length = 1378

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 102/487 (20%), Positives = 183/487 (37%), Gaps = 55/487 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  +D +    + ++I     R+IP + DG KP  R++LFG  +  +   K   
Sbjct: 655  DHSIKKLRYSDFINKELIQFSIYD-TERSIPSVIDGFKPGQRKVLFGCFKRNL---KNEC 710

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G +     YH HG  ++   +  MAQD+  S  + L+   G FGS    G   A
Sbjct: 711  KVAQLTGYIAEHSAYH-HGENSLQQTIVNMAQDFVGSNNINLLLPCGQFGSRKEGGKDAA 769

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            A RY   +L     ++        +D++ N DG   EP       P VLVNG  GI  G 
Sbjct: 770  AARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTGF 828

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            +T IP++N  +V+D  V  +DN D                          +   Y   +G
Sbjct: 829  STYIPSYNPIDVIDNIVNFLDNKD-----------------------MNDMIPWYRNFKG 865

Query: 247  SIVIRGV-----SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE-LVREKRIVDI-ADL 299
            ++          +   + +    Q+V+TE+P         E +   +V  K       D 
Sbjct: 866  TVTRNTKLGYDITGKYELNHSLNQLVITELPVNRWINDYREFLNSIMVTNKEDEGYITDY 925

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             D S  +  ++ I+L   +  D+  + + +   L++    + + L           G + 
Sbjct: 926  GDYSSNEDIKIKIKLN-DSGPDIT-DDIEKVFKLKTTIPTSNMILFDCNKRIKKYNGAID 983

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                F    +  R KY   +       L      ++N    + +I            ++ 
Sbjct: 984  ILKDF----ITTRVKYYSKRREYMIKQLQLQLQQLSNQIRFINMIIN-------NELVIF 1032

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            R      + +L  L  ++      +            +L++ L  LT    + + NE NS
Sbjct: 1033 RKSKKQIVSELKRLNFNTYKQEEEEDEEDNDIEGFNYLLKMSLLSLTLDHINKLNNEYNS 1092

Query: 480  LGIEIKE 486
              + +KE
Sbjct: 1093 KQVLLKE 1099


>gi|215480291|gb|ACJ67490.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480347|gb|ACJ67518.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480349|gb|ACJ67519.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480353|gb|ACJ67521.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 132/292 (45%), Positives = 188/292 (64%), Gaps = 26/292 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 1   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 60

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 61  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 120

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 121 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 180

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 181 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 214

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 266


>gi|301605654|ref|XP_002932456.1| PREDICTED: DNA topoisomerase 2-beta [Xenopus (Silurana) tropicalis]
          Length = 1557

 Score =  194 bits (492), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 114/502 (22%), Positives = 189/502 (37%), Gaps = 60/502 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 634  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 689

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 690  IVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLYPSVDDNLLK 749

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 750  FL--YDDNQRVEPEWYIPIIPLVLVNGAEGIGTGWACKLPNYDTREIVNNVKRMLDGLD- 806

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G          G+    + G    E    DR  I +TE+
Sbjct: 807  ---------PYPLLPSYKNFKG-----TIQELGQNQYAMSG----EIYVLDRNTIEITEL 848

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     EK    I+D ++       + V+++     A      L
Sbjct: 849  PVRTWTQVYKEQVLEPMLNGT-EKTPSLISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 907

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A
Sbjct: 908  HKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNYYTLRKEWLIGMLGAEA 967

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
                  A        V+  I+         +  ++       I+ L+    +S       
Sbjct: 968  ------ARLNNQARFVLEKIQG--------KISIENKTKRDLIQMLVQKGFESDPVKAWK 1013

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                  E Q +A  E  L         D           I        S+ ++  +++Q 
Sbjct: 1014 ------EAQEKATEEDDLQDPNEDNSSDSGTGSGPDFNYILNMSLWSLSKEKVDELVRQR 1067

Query: 505  LLSVKDELDTPRRTRIVEGLLD 526
             +  K+  D  R++       D
Sbjct: 1068 DIKSKELNDLKRKSPPDLWKED 1089


>gi|295315161|gb|ADF97668.1| gyrase subunit A [Campylobacter coli]
 gi|295315167|gb|ADF97671.1| gyrase subunit A [Campylobacter coli]
 gi|295315169|gb|ADF97672.1| gyrase subunit A [Campylobacter coli]
 gi|295315171|gb|ADF97673.1| gyrase subunit A [Campylobacter coli]
 gi|295315173|gb|ADF97674.1| gyrase subunit A [Campylobacter coli]
 gi|295315179|gb|ADF97677.1| gyrase subunit A [Campylobacter coli]
 gi|295315181|gb|ADF97678.1| gyrase subunit A [Campylobacter coli]
 gi|295315185|gb|ADF97680.1| gyrase subunit A [Campylobacter coli]
 gi|295315187|gb|ADF97681.1| gyrase subunit A [Campylobacter coli]
 gi|295315189|gb|ADF97682.1| gyrase subunit A [Campylobacter coli]
 gi|295315191|gb|ADF97683.1| gyrase subunit A [Campylobacter coli]
 gi|295315193|gb|ADF97684.1| gyrase subunit A [Campylobacter coli]
 gi|295315195|gb|ADF97685.1| gyrase subunit A [Campylobacter coli]
 gi|295315197|gb|ADF97686.1| gyrase subunit A [Campylobacter coli]
 gi|295315201|gb|ADF97688.1| gyrase subunit A [Campylobacter coli]
 gi|295315203|gb|ADF97689.1| gyrase subunit A [Campylobacter coli]
 gi|295315211|gb|ADF97693.1| gyrase subunit A [Campylobacter coli]
 gi|295315213|gb|ADF97694.1| gyrase subunit A [Campylobacter coli]
 gi|295315217|gb|ADF97696.1| gyrase subunit A [Campylobacter coli]
 gi|295315219|gb|ADF97697.1| gyrase subunit A [Campylobacter coli]
 gi|295315221|gb|ADF97698.1| gyrase subunit A [Campylobacter coli]
 gi|295315223|gb|ADF97699.1| gyrase subunit A [Campylobacter coli]
 gi|295315225|gb|ADF97700.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 65/84 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPP 125
           QD+S+R   I+GQGNFGS+DGD  
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|3152656|gb|AAC17106.1| DNA-gyrase subunit A [Citrobacter freundii]
          Length = 91

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 55/91 (60%), Positives = 69/91 (75%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDGD  AA RYTE R+ K AH 
Sbjct: 1   IGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHE 60

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYP 172
           L+ DL K+TVDF  NYDG+ Q P V+  + P
Sbjct: 61  LMADLEKETVDFVDNYDGTEQIPDVMPTKIP 91


>gi|112383300|gb|ABI17790.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  193 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG++AIY A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDSAIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|238695410|ref|YP_002922603.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
 gi|220029546|gb|ACL78480.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage JS10]
          Length = 459

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 98/403 (24%), Positives = 173/403 (42%), Gaps = 40/403 (9%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +   T   +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ 
Sbjct: 17  DDTFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFH 76

Query: 73  KCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           K A I+G V  +G YH HG  +  +A A MA  W+    L++GQGNFGS      AA RY
Sbjct: 77  KLASIAGGVADLG-YH-HGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRY 134

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMAT 188
              R+          + KDT ++ P +     +P    L    P VL+NG  GIA G AT
Sbjct: 135 IFARI----GTNFAKVYKDT-EYAPVHADVEHKPPAFYLPI-IPTVLLNGISGIATGYAT 188

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NI  H+   V    + V+    +        +  P+F           I+       GS 
Sbjct: 189 NILPHSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRG-----DVVEIEP------GSY 233

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            +RG          R Q+ +TEIPY+ ++   + K+ + + +K         D+ D  G+
Sbjct: 234 ELRGTYKF----TSRTQMHITEIPYKYDRETYVAKVLDPLEDK---GYITYDDDCDENGF 286

Query: 309 RVVIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFV 362
              +++++        +    ++ +   L    S N+  +N          ++ +++ FV
Sbjct: 287 GFKVKIRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFV 346

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
             R+  V +R    + +  +   + +  A  + ++ + V +I+
Sbjct: 347 EVRKTFVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQ 389


>gi|7682366|gb|AAF67238.1|AF144787_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 92

 Score =  193 bits (491), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 54/91 (59%), Positives = 71/91 (78%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            ARI+G+VMGKYHPHG+++IY+A  RMAQ WS R +L++G GNFGS+DGD  AA+RYTE 
Sbjct: 1   SARITGDVMGKYHPHGDSSIYEATVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTEA 60

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           R+ K A  +L D+ K+TVDF  NYD + +EP
Sbjct: 61  RMSKIALEMLRDINKNTVDFVDNYDANEREP 91


>gi|112383304|gb|ABI17792.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDASEREP 92


>gi|215480339|gb|ACJ67514.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 274

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/292 (45%), Positives = 188/292 (64%), Gaps = 26/292 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 1   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 60

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 61  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 120

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 121 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 180

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 181 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 214

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 266


>gi|90017820|gb|ABD83866.1| topoisomerase IV subunit A [Haemophilus sp. COAD036]
 gi|90017822|gb|ABD83867.1| topoisomerase IV subunit A [Haemophilus sp. COAD165]
          Length = 99

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/100 (53%), Positives = 72/100 (72%), Gaps = 3/100 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 1   KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 59

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           TE RL K +  LL +LG+ TVD++PN+DG+  EP  L AR
Sbjct: 60  TESRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPAR 99


>gi|215480329|gb|ACJ67509.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  193 bits (491), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/292 (45%), Positives = 188/292 (64%), Gaps = 26/292 (8%)

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
             ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LV
Sbjct: 1   GQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLV 60

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK 348
           R+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +
Sbjct: 61  RDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ 120

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP 408
           P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S 
Sbjct: 121 PKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQ 180

Query: 409 NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGL 468
             E AR  L+++                            L+E Q +AIL++RL RLTGL
Sbjct: 181 TAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGL 214

Query: 469 GRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 EREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 266


>gi|215480319|gb|ACJ67504.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480331|gb|ACJ67510.1| DNA gyrase subunit A [Bacillus subtilis]
 gi|215480335|gb|ACJ67512.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 277

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 132/293 (45%), Positives = 188/293 (64%), Gaps = 26/293 (8%)

Query: 228 GAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL 287
              ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+L
Sbjct: 1   AGQILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADL 60

Query: 288 VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
           VR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   
Sbjct: 61  VRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDG 120

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
           +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S
Sbjct: 121 QPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNS 180

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
              E AR  L+++                            L+E Q +AIL++RL RLTG
Sbjct: 181 QTAEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTG 214

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           L R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 LEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 267


>gi|24020922|gb|AAN40856.1| ParC [Streptococcus mitis]
          Length = 104

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 73/104 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
            GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D +
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDT 104


>gi|122893193|gb|ABM67553.1| DNA gyrase [Staphylococcus intermedius]
 gi|122893201|gb|ABM67557.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 67/79 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|26328987|dbj|BAC28232.1| unnamed protein product [Mus musculus]
          Length = 1028

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 123/506 (24%), Positives = 201/506 (39%), Gaps = 60/506 (11%)

Query: 26  QNSYLTYA----INVIL------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
             SYLTY       +IL       R+IP + DGLKP  R++LF   +     +K+ VK A
Sbjct: 189 STSYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVA 245

Query: 76  RISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
           +++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ R
Sbjct: 246 QLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPR 304

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMAT 188
           Y    L   A  L       T+ F   YD + + EP       P VL+NG  GI  G + 
Sbjct: 305 YIFTMLSPLARLLFPPKDDHTLRFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSC 362

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  ++ EVV+    ++D  +            P  P+     G               
Sbjct: 363 KIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIE-----ELASNQY 407

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
           VI G    E    D   I ++E+P +       E++ E +    EK    I D R+    
Sbjct: 408 VING----EVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTD 463

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFV 362
              + VI++     A+     L++   LQS  + N + L  +     +  T++ IL+ F 
Sbjct: 464 TTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 523

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R +    R ++LL      +  L   A  +    +   +I   P  E  +  L+QR +
Sbjct: 524 ELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKV-LIQRGY 582

Query: 423 NASDIKDLID---LIDDSSYTIGSDGTMYLSEVQTRA------ILELRLARLTGLGRDDI 473
           ++  +K   +    + D      SD     S+    A      +L++ L  LT   +D++
Sbjct: 583 DSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLTKEKKDEL 642

Query: 474 RNELNSLGIEIKECLDILSSRSRLLG 499
             + N    E+        S S L  
Sbjct: 643 CKQRNEKEQELNTLK--QKSPSDLWK 666


>gi|164425154|ref|XP_962372.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
 gi|157070812|gb|EAA33136.2| DNA topoisomerase 2 [Neurospora crassa OR74A]
          Length = 1909

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 158/396 (39%), Gaps = 28/396 (7%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              +S TD +    + +++   + R+IP + DGLKP  R++LFG  +  +  +    K   
Sbjct: 777  EKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHD---QKVVE 832

Query: 77   ISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERY 130
            ++G V     YH HG  ++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY
Sbjct: 833  LAGYVSKEAAYH-HGEQSLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARY 891

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               RL   A  +   L +  ++F+ + DG   EP V     P VLVNG  GI  G +T+I
Sbjct: 892  IHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPIIPMVLVNGADGIGTGWSTSI 950

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P ++  ++V+     +                P  P      G  G       G      
Sbjct: 951  PNYHPLDIVENLKRRMGRDSSGDGE-----EKPFEPMTPWFRGWKGTPE--PDGPNRFKF 1003

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYR 309
             G+   E    +  ++ VTE+P ++       K+ E++R  +    I D ++ +D Q   
Sbjct: 1004 NGIV--EVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKSPSWIKDYKEYNDHQTVH 1061

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF---TLIGILKAFVAFRE 366
             +I L+    +  + + L     L    +   +     + +         I++ +  +R 
Sbjct: 1062 FIIALEEKHMSSALRDGLIEKFKLTKTVATTNLVAFDTRGKIHKYENPQEIMEEYYHYRL 1121

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
             +   R K+ L            L      + E++ 
Sbjct: 1122 NLYGERKKHWLKVYHAD---YRKLQNQYRFISEIIE 1154


>gi|312262749|gb|ADQ53044.1| gp52 topoisomerase II medium subunit [Aeromonas phage PX29]
          Length = 438

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 97/480 (20%), Positives = 185/480 (38%), Gaps = 52/480 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +T   I+  +      +A+  I  RA+P + DGLKP  R IL+ +++      +++ K 
Sbjct: 2   KVTKRPISSMVDVEAREFAMYTIEERALPSVVDGLKPAQRYILYSVLK---NAGREFKKN 58

Query: 75  ARISGEVMGKY-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A I+G V+ +Y + HG  A  DA   MA  W+    +I+G+GNFGS      AA RY  C
Sbjct: 59  AAIAG-VISEYGYNHGETAAMDAACLMASTWNNNFPVIQGRGNFGSRAVQEGAAARYIFC 117

Query: 134 RLQKAA--HFLLDDLG--KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
              K +    +  D+   ++++      DGS      L    P VL+NG  GIA G +T 
Sbjct: 118 --TKHSNFDSMFKDMDLLEESLA-----DGSILPRYYLPI-LPTVLLNGVSGIATGFSTK 169

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
           I  HN+  V      V+     D       ++ P F          G          S  
Sbjct: 170 ILPHNVQSVAKCVEQVLKTGKCDEPE----LQFPKF---------FGKIIPIEGKSQSWT 216

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
           + G   +      + ++ +TE+P + ++   +  + +LV   +IV      DES   G  
Sbjct: 217 LEGEYEL----SGKTKLTITELPPKYDRVKYVTLLNKLVDADKIVSY----DESKFDGRE 268

Query: 310 VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREE 367
              ++      D     + +   L    S  +  ++             ++  FV FR  
Sbjct: 269 FCFKITLKREFDATHENIMKTFKLSQAISQYIRVIDPNGELKAYEKASDLIVDFVNFRFG 328

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V+ +R       A ++          + ++ +   II  +      R++++++     D+
Sbjct: 329 VLQKRIDNAKLVANEKLGFARAKVTFIKHVLDQ-DIIFTNNT----RKQVVEQISAFDDL 383

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
           K+        +  +      ++++ +   + +  +         +   +      +IKE 
Sbjct: 384 KEY-------AEQLVQMNLYHMTDDEVLKLEKQVIELKKESDFWETSTQKKQYQSDIKEF 436


>gi|240280878|gb|EER44382.1| DNA topoisomerase 2 [Ajellomyces capsulatus H143]
          Length = 1737

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/500 (19%), Positives = 186/500 (37%), Gaps = 48/500 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V+ +   VK A +SG V+G   Y  HG  ++   +
Sbjct: 811  RSIPSVIDGLKPGQRKVLYTCFKRNVKKD---VKVAELSGYVLGMTAYQ-HGEQSLQQTI 866

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +  +  + +
Sbjct: 867  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADEPLLTY 926

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +T+IP +N  E+V     ++       
Sbjct: 927  NVD-DGQVIEPEIYFPVVPMILINGAEGIGTGWSTSIPNYNPEEIVANLKRLMAGE---- 981

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 982  ---------PLVPMEPWFRGFTG--EVVSMGGERYKFSGRIS----QIGDNEVEITELPI 1026

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       +I+L    +   I   L     
Sbjct: 1027 RSWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFIIQLDEKYAKKAIAEGLEEKFK 1086

Query: 333  LQSLFSVNMVALNGYKPERFTL---IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            L    + + +     +           IL+ F + R ++  +R ++ L++ +     +  
Sbjct: 1087 LTKTIATSNLVAFDSEGRITKYESVEEILREFFSVRLKLYEKRKQHQLSQMQKDLEKMTN 1146

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD----SSYTIGSDG 445
             A  V  + +   +I   P  +  R    +     + + D     ++             
Sbjct: 1147 QARFVQMIIDGKFVISKKPKAQLVRELKEKGFKPFAKVSDAAAKGENAPVVEEDEDDDGE 1206

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK-------ECLDILSSRSRLL 498
               ++      +L + L  LT    + +R ++     EI        E +        L 
Sbjct: 1207 DTEIAANSYDYLLGMPLWSLTKERVEKLRRQIGDKETEIDTLIKLSKEDIWTADLDDFLA 1266

Query: 499  GIIKQELLSVKDELDTPRRT 518
                Q     + +    +RT
Sbjct: 1267 EWKFQLEDEERRQ---TKRT 1283


>gi|122893199|gb|ABM67556.1| DNA gyrase [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYGAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|215480327|gb|ACJ67508.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 273

 Score =  193 bits (489), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 130/288 (45%), Positives = 186/288 (64%), Gaps = 26/288 (9%)

Query: 233 GRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKR 292
           GR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+
Sbjct: 4   GRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKK 63

Query: 293 IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERF 352
           I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  
Sbjct: 64  IEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVL 123

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
           TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E 
Sbjct: 124 TLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEI 183

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
           AR  L+++                            L+E Q +AIL++RL RLTGL R+ 
Sbjct: 184 ARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREK 217

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 218 IEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 265


>gi|311992987|ref|YP_004009854.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
 gi|295815276|gb|ADG36202.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage
           Acj61]
          Length = 465

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/481 (20%), Positives = 193/481 (40%), Gaps = 53/481 (11%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
               +   + N  L YAI  +  RAIP+L DG KPV R +++  ++M    ++K+ K A 
Sbjct: 24  VDRELDSIINNEALAYAIYTVENRAIPNLMDGFKPVQRFMVYRALEMAKGNHQKFHKLAS 83

Query: 77  ISGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           ++G V    YH HG  +  +A A MA  W+     ++GQGNFGS      AA RY  CR+
Sbjct: 84  VAGGVADAGYH-HGENSAQEAGALMANTWNNNFPFLDGQGNFGSRLVQEAAASRYIFCRI 142

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTH 193
                 +  D+        P ++     P    L    P VL+NG  GIA G +T+I  H
Sbjct: 143 SDNFRKVFKDIE-----IAPQHEDEEHLPPKHYLPV-IPTVLLNGVRGIATGYSTSILPH 196

Query: 194 NLGEVVDG-CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           +L  V++   +A+    D + +       G    T     G+  ++  Y           
Sbjct: 197 SLESVIECTRLALQGKLDKEPEVAFPQFNGNIVKTE---DGKYELQGVYKF--------- 244

Query: 253 VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                     + Q+ ++EIPY  ++A  +EK+ + + +K         D+  + G+   +
Sbjct: 245 --------TSKTQMYISEIPYSFDRAKYVEKVLDPLEDK---GFITYDDDCSKHGFGFKV 293

Query: 313 ELKRGAS-AD---VILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFR 365
           + ++     +   ++  ++ R   L       +V ++       +      ++K FV  R
Sbjct: 294 KFRKDYKLPEDEGLMHEKIMRDFKLTEKVPQYIVVIDENGKLNDKFENASDLIKYFVEVR 353

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           ++ V  R ++++NK   +  + +  A+ +  ++    +I+             ++     
Sbjct: 354 KKYVKGRIEFMINKTERQFKLAIAKAMFIKTVNNGETVIKG------------KKKSELK 401

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           +    I +       + +    +L++ +   + E   A  T L              ++ 
Sbjct: 402 EELSKISVFQGFEDQLLAMNLYHLTDDEVVRLREAAHAAKTELDYWKETTVQIEYEKDLD 461

Query: 486 E 486
           E
Sbjct: 462 E 462


>gi|124108685|gb|ABM90919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108737|gb|ABM90945.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 92

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 57/91 (62%), Positives = 71/91 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 2   GHDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
             AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 62  SAAAMRYTEIRLAKIAHGLMADLEKETVDFV 92


>gi|112383306|gb|ABI17793.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDIAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFSDNYDASEREP 92


>gi|112383302|gb|ABI17791.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDYAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSSEREP 92


>gi|153945749|ref|NP_035753.2| DNA topoisomerase 2-alpha [Mus musculus]
 gi|148684229|gb|EDL16176.1| topoisomerase (DNA) II alpha [Mus musculus]
          Length = 1528

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 123/506 (24%), Positives = 201/506 (39%), Gaps = 60/506 (11%)

Query: 26   QNSYLTYA----INVIL------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
              SYLTY       +IL       R+IP + DGLKP  R++LF   +     +K+ VK A
Sbjct: 688  STSYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVA 744

Query: 76   RISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ R
Sbjct: 745  QLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPR 803

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMAT 188
            Y    L   A  L       T+ F   YD + + EP       P VL+NG  GI  G + 
Sbjct: 804  YIFTMLSPLARLLFPPKDDHTLRFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSC 861

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  ++ EVV+    ++D  +            P  P+     G               
Sbjct: 862  KIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIE-----ELASNQY 906

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            VI G    E    D   I ++E+P +       E++ E +    EK    I D R+    
Sbjct: 907  VING----EVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFV 362
               + VI++     A+     L++   LQS  + N + L  +     +  T++ IL+ F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1022

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              R +    R ++LL      +  L   A  +    +   +I   P  E  +  L+QR +
Sbjct: 1023 ELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKV-LIQRGY 1081

Query: 423  NASDIKDLID---LIDDSSYTIGSDGTMYLSEVQTRA------ILELRLARLTGLGRDDI 473
            ++  +K   +    + D      SD     S+    A      +L++ L  LT   +D++
Sbjct: 1082 DSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLTKEKKDEL 1141

Query: 474  RNELNSLGIEIKECLDILSSRSRLLG 499
              + N    E+        S S L  
Sbjct: 1142 CKQRNEKEQELNTLK--QKSPSDLWK 1165


>gi|124108709|gb|ABM90931.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 90

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/90 (62%), Positives = 70/90 (77%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFVD 90


>gi|213023935|ref|ZP_03338382.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 265

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/321 (35%), Positives = 169/321 (52%), Gaps = 57/321 (17%)

Query: 490 ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
           IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK
Sbjct: 2   ILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVK 61

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
             PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  
Sbjct: 62  YQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEA 121

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  L++F +  
Sbjct: 122 SRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTALTEFSRPR 178

Query: 670 RSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
            +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR + GVRGI L
Sbjct: 179 SAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTATGVRGIKL 237

Query: 730 AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           A  D+V+S+ I     A                                           
Sbjct: 238 AGDDKVVSLIIPRGEGA------------------------------------------- 254

Query: 790 CQELKLKEQFILTVSEKGFGK 810
                     ILTV++ G+GK
Sbjct: 255 ----------ILTVTQNGYGK 265



 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 13/236 (5%)

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
              F    R+   A   D   E    +  +QE+ ++  +  G     P++       R  
Sbjct: 21  RDQFGDERRTEITANSADINIE----DLISQEDVVVTLSHQGYVKYQPLTDYEA-QRRGG 75

Query: 722 VGVRGISLAKGDQVISMAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKND 778
            G     + + D +  + +    D           Y   +        G           
Sbjct: 76  KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP 135

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
                 I+         +   +   +  G  K+T+  +F     +  GI A ++   N+ 
Sbjct: 136 LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSA--GIIAVNL---NDG 190

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
             L+ V   + +D+++L S  G ++R   + +R   R   GV     A D++VVS+
Sbjct: 191 DELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSL 246



 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 57/208 (27%)

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
           + +     +    R       +    +  + +  N ++   ++L  +E  ++T+S +G+ 
Sbjct: 1   DILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYV 60

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           K     D+    R GKG  A  + + + I  L      N +D I+  S +G L  + V +
Sbjct: 61  KYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQ 117

Query: 870 IRIASRATK---------------------------GVVIF------------------- 883
           +  ASR  +                           GV +F                   
Sbjct: 118 LPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRP 177

Query: 884 --------STAKDERVVSVERIRESEIV 903
                   +    + ++ V+    S+ V
Sbjct: 178 RSAGIIAVNLNDGDELIGVDLTSGSDEV 205



 Score = 52.9 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 74/218 (33%), Gaps = 11/218 (5%)

Query: 648 VVFATKHGNVRRNKLSDFIQINR--SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
           VV  +  G V+   L+D+    R   GK A ++   D I  +      + IL  +  G+ 
Sbjct: 51  VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 110

Query: 706 VRFPISAIRVFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
               +  +   A R + G   V  + L   +++ +  I+   + +    +         +
Sbjct: 111 YWMKVYQL-PEASRGARGRPIVNLLPLEANERITA--ILPVREYEEGVNVFMATASGTVK 167

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           +    +     S    +    +  E    +L      ++  S  G   R      R   R
Sbjct: 168 KTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGR 227

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +  G+R   ++       +V++        I+ V+  G
Sbjct: 228 TATGVRGIKLA---GDDKVVSLIIPRGEGAILTVTQNG 262


>gi|22094466|gb|AAM91912.1|AF498912_1 gyrase A [Salmonella enterica subsp. enterica serovar Virchow]
          Length = 94

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/91 (58%), Positives = 69/91 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 4   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 63

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           S+DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 64  SIDGDSAAAMRYTEIRLAKIAHELMADLEKE 94


>gi|215480317|gb|ACJ67503.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 275

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/291 (45%), Positives = 188/291 (64%), Gaps = 26/291 (8%)

Query: 230 VILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
            ILGR+GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR
Sbjct: 1   QILGRSGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVR 60

Query: 290 EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP 349
           +K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ T++Q+ F +N++AL   +P
Sbjct: 61  DKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTAVQTSFGINLLALVDGQP 120

Query: 350 ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
           +  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S  
Sbjct: 121 KVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQT 180

Query: 410 PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            E AR  L+++                            L+E Q +AIL++RL RLTGL 
Sbjct: 181 AEIARTGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLE 214

Query: 470 RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 REKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 265


>gi|5453231|gb|AAD43480.1| DNA gyrase subunit A [Staphylococcus simulans]
 gi|5453232|gb|AAD43481.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453233|gb|AAD43482.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453235|gb|AAD43484.1| DNA gyrase subunit A [Staphylococcus epidermidis]
 gi|5453237|gb|AAD43486.1| DNA gyrase subunit A [Staphylococcus capitis]
          Length = 81

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 68/81 (83%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|60651666|gb|AAX32844.1| GyrA [Riemerella anatipestifer]
          Length = 83

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 56/83 (67%), Positives = 69/83 (83%)

Query: 51  PVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           PVHRR+L+GM  +GV  NKKY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   
Sbjct: 1   PVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQ 60

Query: 111 IEGQGNFGSVDGDPPAAERYTEC 133
           ++GQGNFGS+DGDPPAA RYTE 
Sbjct: 61  VDGQGNFGSMDGDPPAAMRYTEA 83


>gi|112383310|gb|ABI17795.1| gyrase [Streptococcus suis]
 gi|112383312|gb|ABI17796.1| gyrase [Streptococcus suis]
 gi|112383314|gb|ABI17797.1| gyrase [Streptococcus suis]
 gi|112383316|gb|ABI17798.1| gyrase [Streptococcus suis]
 gi|112383318|gb|ABI17799.1| gyrase [Streptococcus suis]
 gi|112383320|gb|ABI17800.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIYDA+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDKAIYDAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV++  NYD S +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNYADNYDASEREP 92


>gi|124108741|gb|ABM90947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 70/89 (78%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|22094460|gb|AAM91909.1|AF498909_1 gyrase A [Salmonella enterica subsp. enterica serovar Heidelberg]
          Length = 90

 Score =  192 bits (487), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/90 (58%), Positives = 69/90 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|313235194|emb|CBY25067.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/555 (19%), Positives = 188/555 (33%), Gaps = 64/555 (11%)

Query: 36   VILG-----RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPH 88
            VI       RAIP   DGLKP  R++L+   +     +K  VK A++SG V  M  YH H
Sbjct: 688  VIFSHESCLRAIPCSADGLKPGQRKVLWTCFK---RKDKSKVKVAQLSGSVSEMSAYH-H 743

Query: 89   GNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLD 144
            G  ++ D + ++AQ++  +  + L+E  G FGS  V G   AA RY   RL      L  
Sbjct: 744  GEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKDHAAARYIFTRLAPITRKLYP 803

Query: 145  DLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +       F+ NYD     EP   C   P VLVNG  GI  G +TNIP HN+ + +    
Sbjct: 804  EADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIGTGWSTNIPNHNIRDCIKNIR 861

Query: 204  AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +I+         ++++   +        G  G   +  T       R VS  E    + 
Sbjct: 862  RMIEGK-----EPLDLVPFYE--------GYRGTIESLGTA------RAVSFGEIALLES 902

Query: 264  EQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------IADLRDESDRQGYRVVIELKRG 317
            + + +TE+P QV      +K+ ++   +          I D  + S     + ++ +   
Sbjct: 903  DVVEITELPPQVWTDDYKQKLMKMQGGQDDKGKELPKLIEDFDNNSSHDRVKFIVTMSPT 962

Query: 318  ASADVILNQLYRYTSLQSLF-SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
               +     L+ Y  L       N + L  +  +                     R  Y 
Sbjct: 963  QMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLTVYNNTTDIVKDHY----ELRKTYY 1018

Query: 377  LNKARDRAHVLV-GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +       +   +         ++  I         +R+ ++                
Sbjct: 1019 LKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKRKAIEAKLKERGYASDPVKAW 1078

Query: 436  DSSYTIGSDGTMYLSEVQT-------------RAILELRLARLTGLGRDDIRNELNSLGI 482
            +       D  +   E                + +L + +  LT   ++ +  E   +  
Sbjct: 1079 EKKVRKEQDLELSDDEEDAADENAQLEAKSDYQYLLSMPIYNLTLEKKEALLKEKGQIEH 1138

Query: 483  EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            +         + + L      +L    D++    +                 ++D  +  
Sbjct: 1139 DFDVLK--KKTPTDLWEEDLLDLEKTLDKIQDDFKKMEDNNAKSSGKSKGKGKKDTSIEP 1196

Query: 543  SHLGYVKRVPLSVYR 557
            S LG      +S  R
Sbjct: 1197 SKLGEHIDPFISDVR 1211


>gi|313217160|emb|CBY38323.1| unnamed protein product [Oikopleura dioica]
          Length = 1427

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 107/555 (19%), Positives = 188/555 (33%), Gaps = 64/555 (11%)

Query: 36   VILG-----RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPH 88
            VI       RAIP   DGLKP  R++L+   +     +K  VK A++SG V  M  YH H
Sbjct: 688  VIFSHESCLRAIPCSADGLKPGQRKVLWTCFK---RKDKSKVKVAQLSGSVSEMSAYH-H 743

Query: 89   GNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLD 144
            G  ++ D + ++AQ++  +  + L+E  G FGS  V G   AA RY   RL      L  
Sbjct: 744  GEVSLMDTIIKLAQNYVGANNVNLLEPFGQFGSRRVGGKDHAAARYIFTRLAPITRKLYP 803

Query: 145  DLGKDTVDFRPNYDG-SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCV 203
            +       F+ NYD     EP   C   P VLVNG  GI  G +TNIP HN+ + +    
Sbjct: 804  EADDAL--FKRNYDDNRMVEPTHYCPIVPMVLVNGSSGIGTGWSTNIPNHNIRDCIKNIR 861

Query: 204  AVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDR 263
             +I+         ++++   +        G  G   +  T       R VS  E    + 
Sbjct: 862  RMIEGK-----EPLDLVPFYE--------GYRGTIESLGTA------RAVSFGEIALLES 902

Query: 264  EQIVVTEIPYQVNKAAMLEKIAELVREKRIVD------IADLRDESDRQGYRVVIELKRG 317
            + + +TE+P QV      +K+ ++   +          I D  + S     + ++ +   
Sbjct: 903  DVVEITELPPQVWTDDYKQKLMKMQGGQDDKGKELPKLIEDFDNNSSHDRVKFIVTMSPT 962

Query: 318  ASADVILNQLYRYTSLQSLF-SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
               +     L+ Y  L       N + L  +  +                     R  Y 
Sbjct: 963  QMREARKQGLHEYFGLVKSMVFANTMVLFNHAGKLTVYNNTTDIVKDHY----ELRKTYY 1018

Query: 377  LNKARDRAHVLV-GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L +       +   +         ++  I         +R+ ++                
Sbjct: 1019 LKRHNFLLEKMEARVQFITNRARFILENIEKKITVMNVKRKAIEAKLKERGYASDPVKAW 1078

Query: 436  DSSYTIGSDGTMYLSEVQT-------------RAILELRLARLTGLGRDDIRNELNSLGI 482
            +       D  +   E                + +L + +  LT   ++ +  E   +  
Sbjct: 1079 EKKVRKEQDLELSDDEEDAADENAQLEAKSDYQYLLSMPIYNLTLEKKEALLKEKGQIEH 1138

Query: 483  EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV 542
            +         + + L      +L    D++    +                 ++D  +  
Sbjct: 1139 DFDVLK--KKTPTDLWEEDLLDLEKTLDKIQDDFKKMEDNNAKSSGKSKGKGKKDTSIEP 1196

Query: 543  SHLGYVKRVPLSVYR 557
            S LG      +S  R
Sbjct: 1197 SKLGEHIDPFISDVR 1211


>gi|112383308|gb|ABI17794.1| gyrase [Streptococcus suis]
          Length = 92

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 55/92 (59%), Positives = 72/92 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI+G+VMGKYHPHG+ AIY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYTE
Sbjct: 1   KSARITGDVMGKYHPHGDFAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
            R+ K A  +L D+ K+TV+F  NYD + +EP
Sbjct: 61  ARMSKIALEMLRDINKNTVNFADNYDSNEREP 92


>gi|27542599|gb|AAO16900.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  191 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|5453246|gb|AAD43495.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|295315175|gb|ADF97675.1| gyrase subunit A [Campylobacter coli]
 gi|295315183|gb|ADF97679.1| gyrase subunit A [Campylobacter coli]
 gi|295315199|gb|ADF97687.1| gyrase subunit A [Campylobacter coli]
 gi|295315205|gb|ADF97690.1| gyrase subunit A [Campylobacter coli]
 gi|295315207|gb|ADF97691.1| gyrase subunit A [Campylobacter coli]
 gi|295315209|gb|ADF97692.1| gyrase subunit A [Campylobacter coli]
 gi|295315215|gb|ADF97695.1| gyrase subunit A [Campylobacter coli]
          Length = 84

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 65/84 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFGSVDGDPP 125
           QD+S+R   I+GQGNFGS+DGD  
Sbjct: 61  QDFSMRYPSIDGQGNFGSIDGDGA 84


>gi|18369816|dbj|BAB84103.1| DNA topoisomerase II [Penicillium chrysogenum]
          Length = 1423

 Score =  191 bits (486), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 98/480 (20%), Positives = 182/480 (37%), Gaps = 48/480 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L    +  ++ +   +K   ++G V  M  YH HG+ ++   +
Sbjct: 683  RSIPSVVDGLKPGQRKVLHTCFRRNLKKD---MKVVELAGHVSGMTAYH-HGDVSLQQTI 738

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV---DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
              +AQ +  S  +  +E  GNFGS     GD  +A RY   RL   A  +     +  + 
Sbjct: 739  VGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASA-RYIYTRLSPFARKVFHSADEPLLT 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +  + DG   EP V     P +L+NG  GI  G +++IP +N  EVV+    ++     +
Sbjct: 798  YNED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEEVVNNLKRLMAGEPTE 856

Query: 213  LDALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      G     G      +GI                          +++ +TE+
Sbjct: 857  PMQPWFRGFTGEVVAVGGDRFKFSGIIR--------------------ECGEKEVEITEL 896

Query: 272  PYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            P +       +K+ E+++ +++     D RD +       +I+L        +   L   
Sbjct: 897  PIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFIIQLDEKHMKVALTEGLEEK 956

Query: 331  TSLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              L     + N+VA +      +  T+  ILK F   R +   RR ++ L   +     L
Sbjct: 957  FKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVVRLKYYERRKQFQLADLQRDLEKL 1016

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI------ 441
               A  V  + +   +I     P+       +     S + +   + +D           
Sbjct: 1017 SNQARFVQMIIDGKLVISKKKRPDLIAELKDKGFKPISKVAEAPKMGEDEPVVEEEGEEE 1076

Query: 442  -GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
               + T  LS      +L + +  LT    + +R ++     E+   + I  S+  +   
Sbjct: 1077 SDDNDTQKLSSSF-DYLLSMPMWSLTQERVEKLRRQIGDKETEVD--VLIKLSKEDIWTR 1133


>gi|227518802|ref|ZP_03948851.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
 gi|227073797|gb|EEI11760.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           TX0104]
          Length = 465

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 126/550 (22%), Positives = 230/550 (41%), Gaps = 97/550 (17%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           R+ V++ R ++ L+KAR R H++ GL  A++ LD+V+  IR S + + A++ L+      
Sbjct: 1   RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS----- 55

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                                    +E Q  AI+ L+L RLT     D++ E  +L  +I
Sbjct: 56  ---------------------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQI 94

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVVTV 542
            E L+IL++   L  ++K+EL  VK +   PR T+I E + +++ E    + +ED+VVTV
Sbjct: 95  AELLNILNNEKELFSVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTV 154

Query: 543 SHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           +H GY+KR  +  Y A +        + M++ DF+     V+T   +L  ++ G +    
Sbjct: 155 THEGYIKRSSIRSYTASKPE-----EIGMKEGDFLLYAGEVNTLDHLLLVTNKGNMIYRP 209

Query: 603 VWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKL 662
           V  LP    +  G+ +   +         +I+     +        VF TK G +++ K+
Sbjct: 210 VHELPDLRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMIKQTKM 267

Query: 663 SDFIQINR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPISAIRVF 716
           +DF             MKL S  DEI +V     ++  D+ L +  G  +R+P+  +   
Sbjct: 268 ADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLYEV-PV 326

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            G  + GV+ ++L + D V++  +V                                   
Sbjct: 327 VGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTP---------------------------- 358

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                                  I+ V+++G  KR  + +     R+ +G+      K N
Sbjct: 359 -----------------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLRELKKN 395

Query: 837 EIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
               +V  F     D  +++ + KGT   +      I+ R + G  +    KD +V+ V 
Sbjct: 396 PH-RVV--FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQVMEVH 452

Query: 896 RIRESEIVDE 905
            +  + I +E
Sbjct: 453 EMHSAVIEEE 462


>gi|124108687|gb|ABM90920.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108713|gb|ABM90933.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108717|gb|ABM90935.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108749|gb|ABM90951.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108751|gb|ABM90952.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108769|gb|ABM90961.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|124108771|gb|ABM90962.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 88

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 56/88 (63%), Positives = 69/88 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFR 154
           A RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFV 88


>gi|155371498|ref|YP_001427032.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
 gi|155124818|gb|ABT16685.1| hypothetical protein ATCV1_Z551L [Acanthocystis turfacea Chlorella
            virus 1]
          Length = 1058

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 93/490 (18%), Positives = 178/490 (36%), Gaps = 52/490 (10%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + ++ +T + + D +    + ++    + R+IP + DGLKP  R+ILF  ++  + 
Sbjct: 614  EPGNQLDQKLTKIPVEDFINKDLILFSRYD-VERSIPSVVDGLKPSQRKILFSALKRNLV 672

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
                 +K A+ +G       YH HG A++  A+  MAQD+  S  + L+  +G FGS   
Sbjct: 673  QE---IKVAQFAGYTSENAGYH-HGEASLQGAIVGMAQDYVGSNNINLLLPRGQFGSRLH 728

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY   +L      +     +  +++  + DG   EP       P +LVNG  
Sbjct: 729  GGKDSASARYIFTQLSPNTRDIFHKADERLLNYLED-DGDRIEPEYYVPTIPFLLVNGSS 787

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKN 239
            GI  G +TNIP +N  ++VD    +I+N  +          +G    T   +   +G+ +
Sbjct: 788  GIGTGFSTNIPAYNPKDIVDNVKRLINNETMLPMTPWYRGFKGDIKETSPGVFTCSGVYD 847

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
                      I+G +           + V+E+P         E +  L+ +K    +AD 
Sbjct: 848  ----------IKGKT-----------VTVSELPVGTWTNDYKEHLETLIEKKI---VADF 883

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            R+          I+       +++  +    T+    F  +         +  + + I+ 
Sbjct: 884  RERHTELNVHFEIDFVGTLDPNILKLESTIRTTNMHAFDPSG-----KIKKYDSPLEIIA 938

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
             +   R+E  V+R + LL   + R                  R I    +         +
Sbjct: 939  DWFTTRKEFYVKRKEDLLKDLKARV----------LVAQNKSRFITSVNDGTLVITRRAE 988

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
                    K     +D S   +       L++ +   +     A    L   +       
Sbjct: 989  EDVIKDLGKLKFYKVDKSFDYLLGMKISSLTKERAEKLQAEAAALEKELVILENTATEAM 1048

Query: 480  LGIEIKECLD 489
               +I+    
Sbjct: 1049 WVNDIEAIKM 1058


>gi|22094464|gb|AAM91911.1|AF498911_1 gyrase A [Salmonella enterica subsp. enterica serovar Choleraesuis]
          Length = 97

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           +DGD  AA RYTE RL K AH L+ DL K+
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHELMADLEKE 90


>gi|124108759|gb|ABM90956.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 56/89 (62%), Positives = 70/89 (78%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 61  AAMRYTEIRLAKIAHGLMADLEKETVDFV 89


>gi|122893191|gb|ABM67552.1| DNA gyrase [Staphylococcus intermedius]
          Length = 79

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQDWSLRLLLIEGQGNFG 118
           MAQD+S R  L++GQGNFG
Sbjct: 61  MAQDFSYRYPLVDGQGNFG 79


>gi|227554720|ref|ZP_03984767.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227176148|gb|EEI57120.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 318

 Score =  191 bits (485), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 127/344 (36%), Positives = 210/344 (61%), Gaps = 28/344 (8%)

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +DG V +ID+P+  L+ LME I GPDFPTG ++ G+  IK AY TGRG +++R  + IE 
Sbjct: 1   IDGTVYLIDHPNASLEKLMEYIPGPDFPTGGILQGKAEIKKAYETGRGKVILRAKTKIEP 60

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
             G ++QIV++EIPY+VNKA +++K+ E+   K++  IA++RDESDR G ++V+ELK+  
Sbjct: 61  LKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVVELKKDV 120

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
           +A+ ILN L++ T LQ  ++ NMVA++   P++  L  IL++++  R+ V++ R ++ L+
Sbjct: 121 NAEGILNYLFKNTELQINYNFNMVAIDNMTPQQVGLKRILESYITHRKSVIINRCQFELD 180

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR R H++ GL  A++ LD+V+  IR S + + A++ L+                    
Sbjct: 181 KARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVS------------------- 221

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                      +E Q  AI+ L+L RLT     D++ E  +L  +I E L+IL++   L 
Sbjct: 222 -------DYAFTEEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELF 274

Query: 499 GIIKQELLSVKDELDTPRRTRIVEGLLDMEDED--CIVREDMVV 540
            ++K+EL  VK +   PR T+I E + +++ E    + +ED+VV
Sbjct: 275 SVMKKELREVKKQYGNPRLTQIEEEIQEIKIETAVLVAQEDVVV 318


>gi|24020924|gb|AAN40857.1| ParC [Streptococcus mitis]
          Length = 102

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/102 (51%), Positives = 72/102 (70%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M + G  ++K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN
Sbjct: 1   LYSMNKDGNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGN 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
            GS+DGDPPAA RYTE RL + A +LL D+ K TV F  N+D
Sbjct: 61  NGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFD 102


>gi|224458686|gb|ACN43206.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 267

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 128/286 (44%), Positives = 184/286 (64%), Gaps = 26/286 (9%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIE 60

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTL 120

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR
Sbjct: 121 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIAR 180

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 181 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 214

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 EEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 260


>gi|93278244|gb|ABF06587.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 91

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 52/91 (57%), Positives = 67/91 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ +SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQSFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
           D  AA RYTE R+ + A  +L DL KDTV+F
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTVNF 91


>gi|27542593|gb|AAO16897.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 54/90 (60%), Positives = 68/90 (75%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 1   AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|53854901|gb|AAU95770.1| topoisomerase II [Paramecium bursaria Chlorella virus Marburg 1]
          Length = 1058

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 188/496 (37%), Gaps = 63/496 (12%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + ++  T++ + D +    + ++    + R+IP + DGLKP  R+ILF   +  + 
Sbjct: 614  QPGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLT 672

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
                 +K A+ SG V     YH HG  ++  A+  MAQD+  S  + L+   G FGS   
Sbjct: 673  NE---MKVAQFSGYVAEHSGYH-HGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLL 728

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGG 179
             G   A+ RY   +L  A   + +      + +  + DGS  EP   + A  P +LVNG 
Sbjct: 729  GGKDSASARYIFTKLSPATRQVFNQSDDVLLKYLED-DGSSIEPEWYVPA-IPFLLVNGA 786

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T+IP++N  +++D    +I   ++    +    +G    TG ++    G   
Sbjct: 787  NGIGTGFSTDIPSYNPKDIIDNVKRLISGKEMVP--MTPWYKG---FTGTIVQNDNGTFT 841

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
                 +G   + G             +VV+E+P     +   + +  LV +K IVD  + 
Sbjct: 842  C----KGVAKVNGKV-----------VVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREK 886

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGI 357
              E +     V+ E+      D+ + +L +        + NM A +      +    + I
Sbjct: 887  HTEKN-----VMFEIDYSGEPDISILKLEKVIR-----TTNMHAFDPQGKIKKYADPLDI 936

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            ++ +   R E   +R  YLL     +A +         N    + +I       + + E 
Sbjct: 937  IRDWFEVRREFYTKRKNYLLKDLSHKAAIAE-------NKHRFITLIVNDELVLSKKTES 989

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +           L +L     Y         L    +   LE          +      +
Sbjct: 990  V----------ILSELRTLKFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLKKELSI 1039

Query: 478  NSLGIEIKECLDILSS 493
                   +     L++
Sbjct: 1040 LENTSRTQMWNTDLNN 1055


>gi|22830795|dbj|BAC15613.1| DNA topoisomerase II [Aspergillus ochraceus]
          Length = 1101

 Score =  191 bits (484), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/406 (21%), Positives = 159/406 (39%), Gaps = 38/406 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L    +  ++ +   +K   ++G V  M  YH HG+ ++   +
Sbjct: 677  RSIPSVVDGLKPGQRKVLHTCFRRNLKKD---MKVVELAGHVSGMTAYH-HGDVSLQQTI 732

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV---DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
              +AQ +  S  +  +E  GNFGS     GD  +A RY   RL   A  + +   +  + 
Sbjct: 733  VGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASA-RYIYTRLSPFARKIFNTADEPLLT 791

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +  + DG   EP V     P +L+NG  GI  G +++IP +N  +VV+    ++     +
Sbjct: 792  YNED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEDVVNNLKRLMAGQPTE 850

Query: 213  LDALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      G     G      +GI                          +++ +TE+
Sbjct: 851  PMQPWFRGFTGEVVAVGGDRYKFSGIIR--------------------ECGDKEVEITEL 890

Query: 272  PYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            P +       +K+ E+++ +++     D RD +       +I+L        +   L   
Sbjct: 891  PIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFIIQLDEKHMKVALTEGLEEK 950

Query: 331  TSLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              L     + N+VA +      +  T+  ILK F   R +   RR ++ LN  +     L
Sbjct: 951  FKLTKSIATTNLVAFDPEGRITKYATVDDILKEFYVVRLKYYERRKQFQLNDLQRELEKL 1010

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
               A  V  + +   +I     P        +     + + +   +
Sbjct: 1011 SNQARFVQMIIDGKLVISKKKKPVLITELKEKGFKPIAKVAEAAKM 1056


>gi|215480311|gb|ACJ67500.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 127/286 (44%), Positives = 184/286 (64%), Gaps = 26/286 (9%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+P+QVNKA ++EKIA+LVR+K+I 
Sbjct: 1   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPFQVNKAKLIEKIADLVRDKKIE 60

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL
Sbjct: 61  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTL 120

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR
Sbjct: 121 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIAR 180

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 181 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 214

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 EEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 260


>gi|5453238|gb|AAD43487.1| DNA gyrase subunit A [Staphylococcus warneri]
          Length = 81

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 68/81 (83%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQ++S R  L++G
Sbjct: 61  IYEAMVRMAQEFSYRYPLVDG 81


>gi|328957565|ref|YP_004374951.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
 gi|328673889|gb|AEB29935.1| DNA topoisomerase 4 subunit A [Carnobacterium sp. 17-4]
          Length = 470

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 122/550 (22%), Positives = 220/550 (40%), Gaps = 99/550 (18%)

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +++A++  + EV+ RRT Y L KA  R H++ GL  A++ LD+V+  IR S + + A+  
Sbjct: 1   MIEAYLEHKREVLTRRTNYNLRKAESRQHIVSGLIKALSILDQVIDAIRSSKDKKNAKEN 60

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           L++R                             +E+Q  AI+ L+L RLT      + NE
Sbjct: 61  LIER--------------------------FDFTEIQAEAIVSLQLYRLTNTDITALENE 94

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIV 534
             +L   I     ILSS   L  ++K+EL  VK    +PR T I + +    ++ E  I 
Sbjct: 95  AAALSRAIISYNKILSSSKELDKVMKKELAEVKKNYASPRLTVIQDQIEELKIDTEVLIA 154

Query: 535 REDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSS 594
            E+++V+V+  GY+KR  L  Y     G    + + +++ D+   +  ++T   +L F+S
Sbjct: 155 SEEVIVSVTKEGYIKRTSLRSY-----GASKPNELGIKEGDYPLYIQQLNTLNHLLIFTS 209

Query: 595 LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKH 654
            G +    V  +     +  G+ L   ++ +  E +  +                F TK 
Sbjct: 210 KGNIIYRPVNEISDLRWKDMGEHLSQNIAFSADETVVKVFGI---TQQLPQATFTFITKE 266

Query: 655 GNVRRNKLSDFI---QINRSGKIAMKLDSRDEILSVETCTQE---NDILLTTKLGQCVRF 708
           G +++  +S+++           A+KL +  + L     T+     D+ L T  G  +R+
Sbjct: 267 GYIKQTAVSEYVIGRNYKNKSFSAIKLKTATDELINIIHTENPLLKDVFLVTHRGFGLRY 326

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            +  +    G  + GV+ I+L +GD VI+  ++                           
Sbjct: 327 SLEEV-PVVGSKAAGVKSINLKEGDYVINGVLID-------------------------- 359

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                                  E   KE  IL  + +G  K+ +  DF    R+ +G+ 
Sbjct: 360 ----------------------VEASKKELMIL--THRGSIKKMNILDFESLGRAKRGLL 395

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
                K N    +   F V+  D  ++++ KG  I +      I+ R + G  I      
Sbjct: 396 LLRELKKNPH-RVAFAFEVSKEDHYVILTSKGKEIPLSSASYAISDRYSNGSFIL----- 449

Query: 889 ERVVSVERIR 898
           + V     I 
Sbjct: 450 DEVADGTPIE 459



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 83/262 (31%), Gaps = 58/262 (22%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  TK G ++R  L  +     +    + +   D  L ++     N +L+ T  G  + 
Sbjct: 159 IVSVTKEGYIKRTSLRSYGASKPNE---LGIKEGDYPLYIQQLNTLNHLLIFTSKGNIIY 215

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
            P++ I               L   D                                  
Sbjct: 216 RPVNEIS-------------DLRWKD---------------------------------- 228

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRS--GK 825
              E  S     S +  + +      +L +     ++++G+ K+T+  ++ +  R+   K
Sbjct: 229 -MGEHLSQNIAFSADETVVKVFGITQQLPQATFTFITKEGYIKQTAVSEY-VIGRNYKNK 286

Query: 826 GIRATDVSKINEIGALVAVFPVNDN--DQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
              A  +        L+ +    +     + LV+ +G  +R  + E+ +      GV   
Sbjct: 287 SFSAIKLKTA--TDELINIIHTENPLLKDVFLVTHRGFGLRYSLEEVPVVGSKAAGVKSI 344

Query: 884 STAKDERVVSVERIRESEIVDE 905
           +  + + V++   I       E
Sbjct: 345 NLKEGDYVINGVLIDVEASKKE 366


>gi|224458682|gb|ACN43204.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 268

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 128/286 (44%), Positives = 183/286 (63%), Gaps = 26/286 (9%)

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
           +GI+ AY +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I 
Sbjct: 2   SGIRKAYESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIE 61

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL 354
            I DLRDESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+   L
Sbjct: 62  GITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLNL 121

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETAR 414
              L+ ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR
Sbjct: 122 KQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIAR 181

Query: 415 RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIR 474
             L+++                            L+E Q +AIL++RL RLTGL R+ I 
Sbjct: 182 TGLIEQ--------------------------FSLTEKQAQAILDMRLQRLTGLEREKIE 215

Query: 475 NELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            E  SL   I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 216 EEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 261


>gi|149054149|gb|EDM05966.1| topoisomerase (DNA) 2 alpha [Rattus norvegicus]
          Length = 1528

 Score =  190 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 106/485 (21%), Positives = 186/485 (38%), Gaps = 61/485 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 711  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 766

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 767  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLR 826

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 827  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE- 883

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I +TE+
Sbjct: 884  ---------PLPMLPSYKNYKGTIE-----ELASNQYVING----EVAILNSTTIEITEL 925

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + VI++     A+     L+
Sbjct: 926  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLH 985

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLL-------- 377
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL        
Sbjct: 986  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESS 1045

Query: 378  ---NKARDRAHVLVGLAIAVANLDE-----VVRIIRFSPNPETARRELMQRSWNASDIKD 429
               N+AR     + G  +      +     +++    S   +  +    +      + ++
Sbjct: 1046 KLNNQARFILEKIDGKIVIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPEEEENEEN 1105

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                 + SS    S  T          +L++ L  LT   +D++  + +    E+     
Sbjct: 1106 EESESESSSPAAESGPTF-------NYLLDMPLWYLTKEKKDELCKQRDEKEQELNTLKK 1158

Query: 490  ILSSR 494
               S 
Sbjct: 1159 KTPSD 1163


>gi|161622523|ref|YP_001595383.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
 gi|160213829|gb|ABX11168.1| gp52 topoisomerase II medium subunit [Enterobacteria phage JS98]
          Length = 442

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/401 (24%), Positives = 174/401 (43%), Gaps = 40/401 (9%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +TS  +   + N  L YA+  +  RAIP++ DG KPV R ++   + M     +K+ K 
Sbjct: 2   ELTSRGLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKL 61

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           A I+G V  +G YH HG  +  +A A MA  W+    L++GQGNFGS      AA RY  
Sbjct: 62  ASIAGGVADLG-YH-HGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKAAASRYIF 119

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNI 190
            R+          + KDT ++ P +     +P    L    P VL+NG  GIA G ATNI
Sbjct: 120 ARI----GTNFAKVYKDT-EYAPVHADVEHKPPAFYLPI-IPTVLLNGISGIATGYATNI 173

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             H+   V    + V+    +        +  P+F           I+       GS  +
Sbjct: 174 LPHSFDSVKKAVLQVLQEKRVTKPK----VAYPEFRG-----DVVEIEP------GSYEL 218

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
           RG          R Q+ +TEIPY+ ++   + K+ + + +K         D+ D  G+  
Sbjct: 219 RGTYKF----TSRTQMHITEIPYKYDRETYVAKVLDPLEDK---GYITYDDDCDENGFGF 271

Query: 311 VIELKRGA----SADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAF 364
            +++++        +    ++ +   L    S N+  +N          ++ +++ FV  
Sbjct: 272 KVKIRKEYELPTEENKKHEKIMKDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEV 331

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
           R+  V +R    + +  +   + +  A  + ++ + V +I+
Sbjct: 332 RKTFVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQ 372


>gi|194676107|ref|XP_001254458.2| PREDICTED: DNA topoisomerase II, alpha isozyme [Bos taurus]
 gi|297487046|ref|XP_002696055.1| PREDICTED: topoisomerase (DNA) II alpha 170kDa [Bos taurus]
 gi|296476435|gb|DAA18550.1| topoisomerase (DNA) II alpha 170kDa [Bos taurus]
          Length = 1338

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 677  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 732

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 733  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPAKDDHTLK 792

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 793  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEE- 849

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 850  ---------PLPMLPSYKNFKGTVE-----ELAPNQYVISG----EVAILNSTTIEISEL 891

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 892  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERAGLH 951

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 952  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1011

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1012 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1057


>gi|109290217|ref|YP_656466.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
 gi|104345890|gb|ABF72790.1| gp52 DNA topoisomerase subunit [Aeromonas phage 25]
          Length = 544

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 186/472 (39%), Gaps = 63/472 (13%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L +A+  +  RAIP + DG KPV R  ++  ++   +   K+ K 
Sbjct: 99  NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 158

Query: 75  ARISGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A ++G V    YH HG  +   A   +A  W+  + ++EG GNFGS      AA RY  C
Sbjct: 159 AALAGGVSEAGYH-HGEGSAAGAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFC 217

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY-----PNVLVNGGGGIAVGMAT 188
           R+    H    D+ KD +   P +      P  L  R+     P VL NG  GIA G AT
Sbjct: 218 RV----HQNFWDIYKD-ISLSPVHPD----PEHLPPRFYLPVIPMVLANGVKGIATGYAT 268

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  H+   +V   +A +   +I    +        FP         GI     +   SI
Sbjct: 269 TIFPHSYESLVKCTLAAVKGEEIPEPEV-------QFPC------FKGIVRRINS--KSI 313

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            I G+  +      + ++++TE+P + ++   +  + +L  + +IV   +        G+
Sbjct: 314 EIEGLYEL----VGQTKLIITEVPVRYDRLEYVSILDKLEEQGKIVGYKEQTS----DGF 365

Query: 309 RVVIELK--------RGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGIL 358
           R  + LK           + +V   ++ +  +L+   S N+  L+      E      ++
Sbjct: 366 RFEVTLKRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLI 425

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           + FV  R++   +R  +   KA     +     A     ++E + +   S      + +L
Sbjct: 426 RDFVEHRKKYTNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEEKIVLRGKS------KAQL 479

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           +    +  ++             +       L+E +T  + E  L +     
Sbjct: 480 IAEVKSKPNMAGF-------ENELVGMSIYRLTEDETHKLQEEALKQTKEYD 524


>gi|313192268|emb|CBY05942.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 102

 Score =  190 bits (483), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 56/92 (60%), Positives = 70/92 (76%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVFGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             AA RYTE RL K AH L+ DL K+TVDF  
Sbjct: 64  SAAAMRYTEIRLAKIAHELMADLKKETVDFVD 95


>gi|124108701|gb|ABM90927.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 89

 Score =  190 bits (483), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 69/89 (77%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           A RYTE RL K AH L+ DL K+TVDF  
Sbjct: 61  AMRYTEIRLAKIAHGLMADLEKETVDFVD 89


>gi|1174742|sp|P41516|TOP2A_RAT RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|587515|emb|CAA86496.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 167/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 710  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 766  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLR 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 826  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE- 882

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I +TE+
Sbjct: 883  ---------PLPMLPSYKNYKGTIE-----ELASNQYVING----EVAILNSTTIEITEL 924

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + VI++     A+     L+
Sbjct: 925  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLH 984

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 985  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESS 1044

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   +I   P  E  +  L+QR +++  +K   +
Sbjct: 1045 KLNNQARFILEKIDGKIVIENKPKKELIKV-LIQRGYDSDPVKAWKE 1090


>gi|38259192|ref|NP_071519.2| DNA topoisomerase 2-alpha [Rattus norvegicus]
 gi|57964|emb|CAA79611.1| DNA topoisomerase II [Rattus norvegicus]
          Length = 1526

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 100/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 710  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 766  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPSKDDHTLR 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 826  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLLDGEE- 882

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I +TE+
Sbjct: 883  ---------PLPMLPSYKNYKGTIE-----ELASNQYVING----EVAILNSTTIEITEL 924

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + VI++     A+     L+
Sbjct: 925  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLH 984

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 985  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESS 1044

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   +I   P  E  +  L+QR +++  +K   +
Sbjct: 1045 KLNNQARFILEKIDGKIVIENKPKKELIKV-LIQRGYDSDPVKAWKE 1090


>gi|5453230|gb|AAD43479.1| DNA gyrase subunit A [Staphylococcus simulans]
          Length = 81

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|2909393|emb|CAA76313.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  190 bits (482), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/481 (22%), Positives = 189/481 (39%), Gaps = 48/481 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 711  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 766

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L      L       T+ 
Sbjct: 767  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLK 826

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 827  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEE- 883

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 884  ---------PLPMLPSYKNFKGTIE-----ELASNQYVING----EVAILNSTTIEISEL 925

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + VI++     A+     L+
Sbjct: 926  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLH 985

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ ILK F   R +    R ++LL      + 
Sbjct: 986  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELRLKYYGLRKEWLLGMLGAESA 1045

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L   A  +    +   II   P  E  +  L+QR +++  +K   +          ++ 
Sbjct: 1046 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKEAQQKVPDEEENEE 1104

Query: 446  TMYL-------SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            +          S      +L++ L  LT   +D++  + N    E+    +   S S L 
Sbjct: 1105 SDNENSDSVAESGPTFNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKN--KSPSDLW 1162

Query: 499  G 499
             
Sbjct: 1163 K 1163


>gi|1174741|sp|P41515|TOP2A_CRIGR RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|191218|gb|AAA37023.1| DNA topoisomerase II [Cricetulus griseus]
          Length = 1526

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/481 (22%), Positives = 189/481 (39%), Gaps = 48/481 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 711  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 766

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L      L       T+ 
Sbjct: 767  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLK 826

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 827  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLLDGEE- 883

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 884  ---------PLPMLPSYKNFKGTIE-----ELASNQYVING----EVAILNSTTIEISEL 925

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + VI++     A+     L+
Sbjct: 926  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLH 985

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ ILK F   R +    R ++LL      + 
Sbjct: 986  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELRLKYYGLRKEWLLGMLGAESA 1045

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L   A  +    +   II   P  E  +  L+QR +++  +K   +          ++ 
Sbjct: 1046 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKEAQQKVPDEEENEE 1104

Query: 446  TMYL-------SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            +          S      +L++ L  LT   +D++  + N    E+    +   S S L 
Sbjct: 1105 SDNENSDSVAESGPTFNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKN--KSPSDLW 1162

Query: 499  G 499
             
Sbjct: 1163 K 1163


>gi|5453251|gb|AAD43500.1| DNA gyrase subunit A [Staphylococcus lugdunensis]
          Length = 81

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L+ G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVNG 81


>gi|5453236|gb|AAD43485.1| DNA gyrase subunit A [Staphylococcus epidermidis]
          Length = 81

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ RMAQD+S R  L++G
Sbjct: 61  IYEAMVRMAQDFSYRYPLVDG 81


>gi|155370647|ref|YP_001426181.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
 gi|155123967|gb|ABT15834.1| hypothetical protein FR483_N549R [Paramecium bursaria Chlorella virus
            FR483]
          Length = 1058

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 98/496 (19%), Positives = 188/496 (37%), Gaps = 63/496 (12%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + ++  T++ + D +    + ++    + R+IP + DGLKP  R+ILF   +  + 
Sbjct: 614  QPGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLV 672

Query: 67   WNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
                 +K A+ SG V  +  YH HG  ++  A+  MAQD+  S  + L+   G FGS   
Sbjct: 673  QE---IKVAQFSGYVSEISGYH-HGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRLL 728

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGG 179
             G   A+ RY   +L      + +      + +  + DGS  EP   + A  P +LVNG 
Sbjct: 729  GGKDSASARYIFTKLSPVTRQVFNQADDVLLKYLED-DGSSIEPEWYVPA-IPFLLVNGA 786

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T+IP++N  +++D    +I         ++ +       TG+++    G   
Sbjct: 787  NGIGTGFSTDIPSYNPKDIIDNVKRLI-----SGKEMVPMSPWYKEFTGSIVQNDNGTFT 841

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
                 +G   + G             +VV+E+P     +   + +  LV +K IVD  + 
Sbjct: 842  C----KGVAKVSGK-----------NVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREK 886

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGI 357
              E +     V+ E+      D+ + +L +        + NM A +      +    + I
Sbjct: 887  HTEKN-----VLFEIDYSGEPDISILKLEKVIR-----TTNMHAFDPQGKIKKYACSLDI 936

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            ++ +   R+    +R  YL+     +A +         N    + +I       + + E 
Sbjct: 937  IRDWFEVRKTFYTKRKAYLIKDLSHKAAIAE-------NKHRFITLIVNDELVLSKKTES 989

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +           L +L     Y         L    +   LE          +      +
Sbjct: 990  V----------ILSELRTLKFYKSDGSYKYLLDMSISSLTLERAEKLRLEAEKLKKELTI 1039

Query: 478  NSLGIEIKECLDILSS 493
                  ++     L++
Sbjct: 1040 LENTSLVQMWNTDLNN 1055


>gi|327275489|ref|XP_003222506.1| PREDICTED: DNA topoisomerase 2-alpha-like [Anolis carolinensis]
          Length = 1559

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 105/488 (21%), Positives = 186/488 (38%), Gaps = 59/488 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 715  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGETSLMMT 770

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A      L  + + 
Sbjct: 771  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLAFPVLDDNVLK 830

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   +D + + EP       P VL+NG  GI  G +  IP +++ EVV+    ++D  + 
Sbjct: 831  FL--FDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNYDVREVVNNIRRMLDGDE- 887

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G        + G+   V+ G   I  ++      +    
Sbjct: 888  ---------PLPMMPNYKNFKGTID-----SVGQNQYVVNGEVSIIDSTTIEISELPVRT 933

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
              QV K  +LE +     EK    I D ++       R VI++     A+     L++  
Sbjct: 934  WTQVYKEQVLEPMLNGT-EKTPPLITDYKEYHTDTTVRFVIKMSEQKLAEAEAAGLHKVF 992

Query: 332  SLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLL----------- 377
             LQS  +   + L  +     +  T   IL+ F   R      R  +L+           
Sbjct: 993  KLQSSLACPNMVLFDHIGCLKKYETAEDILREFYELRLRYYSLRKDWLVGMLGAESAKLN 1052

Query: 378  NKARDRAHVLVGLAIAVANLDE-----VVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            N+AR     + G  +      +     +++    S   +  +    + S + S+ +   +
Sbjct: 1053 NQARFILEKIEGKIVIENKPKKELIKVLIQRGYDSDPVKKWKESQQKGSDDDSNEEGESE 1112

Query: 433  LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
              ++   + G D            +L + L  LT   +D++  + +    E++       
Sbjct: 1113 KENEPDASTGPDFGY---------LLNMPLWYLTKEKKDELCKQRDDKETELETLKR--K 1161

Query: 493  SRSRLLGI 500
            S   L   
Sbjct: 1162 SPDDLWRH 1169


>gi|288565|emb|CAA78821.1| DNA topoisomerase II [Homo sapiens]
          Length = 1031

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 138 ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 193

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 194 IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 253

Query: 153 FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 254 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 310

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 311 ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 352

Query: 272 PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 353 PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 411

Query: 328 YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
           ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 412 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 471

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                    I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 472 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 531

Query: 443 SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 532 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 589

Query: 498 LGIIKQELLSVKDELDTPRR 517
                   +   D++++  R
Sbjct: 590 WKEDLAAFVEELDKVESQER 609


>gi|313192260|emb|CBY05938.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 71/97 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WN+ Y K AR+ G+V G+YHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 5   GHDWNQAYKKSARVVGDVFGEYHPHGDSAVYVTIVRMAQPFSLRYMLVDGQGNFGSIDGD 64

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             AA RYTE RL K AH L+ DL K+TVDF    D  
Sbjct: 65  SAAAMRYTEIRLAKIAHELMADLEKETVDFVDKNDDK 101


>gi|5453240|gb|AAD43489.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453241|gb|AAD43490.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453242|gb|AAD43491.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453243|gb|AAD43492.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453244|gb|AAD43493.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
 gi|5453245|gb|AAD43494.1| DNA gyrase subunit A [Staphylococcus haemolyticus]
          Length = 81

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|114586205|ref|XP_516332.2| PREDICTED: DNA topoisomerase II, beta isozyme [Pan troglodytes]
          Length = 1634

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 741  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 796

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 797  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 856

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 857  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 913

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 914  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 955

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 956  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1014

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1015 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1074

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1075 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1134

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1135 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1192

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1193 WKEDLAAFVEELDKVESQER 1212


>gi|150951045|ref|XP_001387295.2| DNA topoisomerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388275|gb|EAZ63272.2| DNA topoisomerase II [Pichia stipitis CBS 6054]
          Length = 1439

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/528 (18%), Positives = 196/528 (37%), Gaps = 54/528 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + I+D +    + +++   + R+IP + DG KP  R++L+G  +  +   K  +
Sbjct: 731  DPNLTEIPISDFINQELILFSMADNV-RSIPSVLDGFKPGQRKVLYGCFKRNL---KSEI 786

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A++SG V  K  YH HG  ++   +  +AQ++  S  + L++  G FG+    G   +
Sbjct: 787  KVAQLSGYVSEKTGYH-HGEQSLVQTIIGLAQNFVGSNNINLLKPNGAFGTRAAGGKDFS 845

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            A RY    + K    + + L      +  + D    EP   L    P +LVNG  GI  G
Sbjct: 846  AARYIFTEISKITRAIFNPLDDPIYTYVQD-DEQSVEPEWYLPV-IPMLLVNGSEGIGTG 903

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP++N  ++VD    +++   ++                    G  G       G 
Sbjct: 904  WSTNIPSYNPLDLVDNIRRLMNGEPMEEMKPWF-------------KGWEGTIE--PNGP 948

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
                + G         D   + +TEIP +     + E +   +  ++        +E   
Sbjct: 949  DKYKVVGKID----QIDETTVEITEIPVKTWTNNVKEFLLAGLGNEKTPAWIKDMEEQHG 1004

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNG--YKPERFTLIGILKAFV 362
               R V+++     A  +   L     L S  S+ NMVA +         +   IL+ + 
Sbjct: 1005 LNIRFVVKMSPDEMAKALKVGLLEKFKLISSISMSNMVAFDPLGRIKRYSSAQEILRDYY 1064

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              R E   +R  +++++ +++           +     V++I       + ++ +     
Sbjct: 1065 YVRLEYYQKRKDFMMDELQNQLTKF-------SEQARFVKMIIDKQLSVSNKKRV----- 1112

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                  DL+  ++D  +   +     +SE    ++       +     +        +G 
Sbjct: 1113 ------DLVKTLEDLKFVKFNKNNKPVSETGNDSLFLAAEEDIEEAEAEVGDVSQLLIGG 1166

Query: 483  EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDE 530
                  D       +       L      L   R  ++++   + E E
Sbjct: 1167 IQVGNEDNEHKPETIYSHYDYLLGMSIWSLTRERYEKLLQQKDEKEHE 1214


>gi|32478664|gb|AAP83584.1| DNA-topoisomerase II [Physarum polycephalum]
          Length = 1498

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 150/386 (38%), Gaps = 44/386 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            RAIP + DGLKP  R++L+   + G+      +K A+++G V     YH HG  +++  +
Sbjct: 1029 RAIPSVVDGLKPGQRKVLYASFKRGLTQE---MKVAQLAGYVAEHTAYH-HGEESLHGTI 1084

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  +  L L+   G FG+    G   A+ RY   +L      +  DL     D 
Sbjct: 1085 VNMAQDFVGANNLPLLLPSGQFGTRLQGGKDAASARYIFTKLAPLTRTIFPDLD----DP 1140

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              NY   DG   +P       P VLVNG  G+ +G  T+IP +N   ++D  + ++ N  
Sbjct: 1141 VLNYLEGDGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTSIPMYNPTNLIDNLLRLLHNEP 1200

Query: 211  IDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++      +  +G    T        G+                    + +       ++
Sbjct: 1201 MEPLTPWYKGFKGSVELTPPFTFKTYGVI-------------------EPTKKEHIFKIS 1241

Query: 270  EIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESDRQGYRVVIELKRGASADVI---LN 325
            E+P +       E +   V+ EK    + D  + +  Q     +   RGA A  I     
Sbjct: 1242 ELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNTDQKVDFEVTFPRGAEAKPIPQNAQ 1301

Query: 326  QLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             L +   L+S F + MV  + +    E    + I++ F   R E   +R         + 
Sbjct: 1302 DLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDIIRDFFEVRMEYYAKRKAAREKVLENE 1361

Query: 384  AHVL-VGLAIAVANLDEVVRIIRFSP 408
            A  L   L      +   +++   S 
Sbjct: 1362 AKRLGDKLKFVKLVISGSLKLFGRSK 1387


>gi|2501297|sp|P87078|TOP2_CANAL RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|2113829|emb|CAA71405.1| topoisomerase II [Candida albicans]
          Length = 1461

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/414 (19%), Positives = 159/414 (38%), Gaps = 38/414 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  IT + I+D +   ++ ++++  + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 724  DPEITEIPISDFINKEFILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSE---I 779

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 780  KVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKDFS 838

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            A RY    L +    + + L      +  + D    EP   L    P +LVNG  GI  G
Sbjct: 839  AARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPV-LPMILVNGAEGIGTG 896

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP++N  ++V     +++    +L  +    +G     G  +            G 
Sbjct: 897  WSTNIPSYNPKDLVTNIRRLMNG--EELQEMTPWYKG----WGGDLEPM---------GP 941

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK-IAELVREKRIVDIADLRDESD 304
                + G         D   + +TEIP +     + E  ++    EK    I D+ +   
Sbjct: 942  QKFKVSGRIE----QIDSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH-H 996

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                R V++L        +   L     L S  S+  +              +L+    F
Sbjct: 997  TTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKDF 1056

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
                +    +   +   D       L +       +  II    +    +++ +
Sbjct: 1057 YYVRLEY-YQKRKDYMTDNL--QNQLLMLSEQARFIKMIIEKQLSVANKKKKQL 1107


>gi|303276424|ref|XP_003057506.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226461858|gb|EEH59151.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1473

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/470 (21%), Positives = 171/470 (36%), Gaps = 39/470 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  ++ +   +K A++SG V     YH HG A++   +
Sbjct: 724  RSIPSVVDGFKPSQRKVLFSCFKRKLKSD---IKVAQLSGYVSEHSAYH-HGEASLASTI 779

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  S  + L+   G FG+    G   A+ RY   RL      +  +     +D+
Sbjct: 780  VGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIFTRLAPICRAIFPEADDALLDY 839

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              N DG   EP       P VLVNG  GI  G +T+IP +N  ++ D    ++++ + + 
Sbjct: 840  I-NEDGQVIEPDYYLPILPLVLVNGADGIGTGWSTSIPNYNPRDLTDNIRRLLNDEEPER 898

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                                   +      G     I G   I     +   ++++E+P 
Sbjct: 899  MHPW------------YRNFNGSLTEEIVKGEIRYHISGAYEI----VNETTLMISELPI 942

Query: 274  QVNKAAMLEKIAELVREKR---IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            +       E +  ++  K       I D ++         V+ +     A      + + 
Sbjct: 943  RSWTTDYKEFLENMMNPKEKNATPFITDYKEHHTDTTVHFVVTMTPEKMAQAQKEGIEKK 1002

Query: 331  TSLQSLFSV-NMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              L S  S  NM   +      +      I+KAFV  R +   +R   L+ +A      L
Sbjct: 1003 FKLSSKVSTSNMHCFDANGGIQKYSNPEEIMKAFVPLRLKAYEKRRTMLIRQAESELKRL 1062

Query: 388  -VGLAIAVANLDEVVRIIRFSPNPETARRELM--QRSWNASDIKDLIDLIDDSSYTIGSD 444
                   +A +DE + I R   +      E +   +      +   ID I +        
Sbjct: 1063 ANKTRFILAVVDEKLSIGRKKKSALVEELESLGFDKMTKTQKVSAAIDEIAEGDEEAADA 1122

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                 S      +L + L  LT    D++  E  S   E+          
Sbjct: 1123 VE---SGANYDYLLSMPLWNLTQEKVDELVTEKESKEEEVAALHATTDKE 1169


>gi|113681126|ref|NP_001038656.1| DNA topoisomerase 2-beta [Danio rerio]
 gi|94733296|emb|CAK11279.1| novel protein similar to vertebrate topoisomerase (DNA) II beta
            180kDa (TOP2B) [Danio rerio]
          Length = 1618

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 145/351 (41%), Gaps = 38/351 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF  ++     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 732  ERSIPSLVDGLKPGQRKVLFTCVK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 787

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + +++  G FG+    G   A+ RY    L   A  L   +    + 
Sbjct: 788  IVNLAQNFVGSNNVNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSSLLK 847

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  IP ++  E+V+    ++++ D 
Sbjct: 848  FL--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDPREIVNNINRMLNHQD- 904

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G       +  G+   ++ G    E +  D+  I ++E+
Sbjct: 905  ---------PLPMLPSYKNFKG-----TIHELGQNQYLVSG----EVSVLDKNTIEISEL 946

Query: 272  PYQVNKAAMLEKI---AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +    A  E +        +K    I+D ++       + V+ +     A      L+
Sbjct: 947  PVRTWTQAYKESVLEPMLQGTDKTPPLISDYKEYHTDTTVKFVVRMTEEKLAQAEAAGLH 1006

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTL---IGILKAFVAFREEVVVRRTKYL 376
            +   LQS  + N + L  +            ILK F   R      R  +L
Sbjct: 1007 KVFKLQSSLTCNSMVLFDHMGCMKRYESVQEILKEFFELRLHYYKLRKDWL 1057


>gi|20141946|sp|Q02880|TOP2B_HUMAN RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
          Length = 1626

 Score =  189 bits (480), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 733  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 788

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 789  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 848

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 849  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 905

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 906  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 947

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 948  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1006

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1007 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1066

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1067 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1126

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1127 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1184

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1185 WKEDLAAFVEELDKVESQER 1204


>gi|19913408|ref|NP_001059.2| DNA topoisomerase 2-beta [Homo sapiens]
 gi|119584761|gb|EAW64357.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_a [Homo sapiens]
 gi|162317664|gb|AAI56331.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
 gi|162318196|gb|AAI57119.1| Topoisomerase (DNA) II beta 180kDa [synthetic construct]
          Length = 1621

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 728  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 783

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 784  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 843

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 844  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 900

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 901  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 942

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 943  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1001

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1002 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1061

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1062 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1121

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1122 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1179

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1180 WKEDLAAFVEELDKVESQER 1199


>gi|37231|emb|CAA48197.1| DNA topoisomerase II [Homo sapiens]
          Length = 1621

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 728  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 783

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 784  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 843

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 844  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 900

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 901  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 942

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 943  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1001

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1002 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1061

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1062 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1121

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1122 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1179

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1180 WKEDLAAFVEELDKVESQER 1199


>gi|5453247|gb|AAD43496.1| DNA gyrase subunit A [Staphylococcus hominis]
 gi|5453248|gb|AAD43497.1| DNA gyrase subunit A [Staphylococcus hominis]
          Length = 81

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/81 (60%), Positives = 66/81 (81%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDFS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IYDA+ RMAQ +S R  L++G
Sbjct: 61  IYDAMVRMAQTFSYRYPLVDG 81


>gi|62087338|dbj|BAD92116.1| DNA topoisomerase II, beta isozyme variant [Homo sapiens]
          Length = 1009

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 116 ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 171

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 172 IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 231

Query: 153 FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 232 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 288

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 289 ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 330

Query: 272 PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 331 PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 389

Query: 328 YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
           ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 390 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 449

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                    I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 450 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 509

Query: 443 SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                       S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 510 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 567

Query: 498 LGIIKQELLSVKDELDTPRR 517
                   +   D++++  R
Sbjct: 568 WKEDLAAFVEELDKVESQER 587


>gi|27542595|gb|AAO16898.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 90

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 52/90 (57%), Positives = 67/90 (74%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
               +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 1   ATNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           S+DGD  AA RYTE RL K AH L+ DL K
Sbjct: 61  SIDGDSAAAMRYTEIRLAKIAHELMADLEK 90


>gi|297287019|ref|XP_001092092.2| PREDICTED: DNA topoisomerase 2-beta [Macaca mulatta]
          Length = 1621

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 187/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 728  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 783

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 784  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 843

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 844  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 900

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 901  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 942

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 943  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1001

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1002 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1061

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1062 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1121

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1122 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1179

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D+++   R
Sbjct: 1180 WKEDLAAFVEELDKVEAQER 1199


>gi|82654941|sp|P0C0Q9|GYRA_STAEP RecName: Full=DNA gyrase subunit A
 gi|240997|gb|AAB20672.1| DNA gyrase A [Staphylococcus epidermidis]
          Length = 94

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 52/92 (56%), Positives = 72/92 (78%)

Query: 10  EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
           E  +  I   +IT EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K
Sbjct: 3   ELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDK 62

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
            Y K ARI G+VMGKYHPHG+++IY+A+ RMA
Sbjct: 63  PYKKSARIVGDVMGKYHPHGDSSIYEAMVRMA 94


>gi|84995060|ref|XP_952252.1| DNA topoisomerase II [Theileria annulata strain Ankara]
 gi|65302413|emb|CAI74520.1| DNA topoisomerase II, putative [Theileria annulata]
          Length = 1369

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 185/487 (37%), Gaps = 55/487 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  +D +    + ++I     R+IP + DG KP  R++LFG  +  +   K   
Sbjct: 655  DHSIKKLRYSDFINKELIQFSIYD-TERSIPSVIDGFKPGQRKVLFGCFKRNL---KNEC 710

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G +     YH HG  ++   +  MAQD+  S  + L+   G FGS    G   A
Sbjct: 711  KVAQLTGYIAEHSAYH-HGENSLQQTIINMAQDYVGSNNINLLLPCGQFGSRKEGGKDAA 769

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            A RY   +L     ++        +D++ N DG   EP       P VLVNG  GI  G 
Sbjct: 770  AARYIFTKLSPLTRYIFLQEDDPILDYQ-NDDGQIIEPYYYLPIIPMVLVNGAEGIGTGF 828

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            +T IP++N  +++D  V  +DN D                          +   Y   +G
Sbjct: 829  STFIPSYNPIDIIDNIVNFLDNKD-----------------------MNDMIPWYRNFKG 865

Query: 247  SIVIRGV-----SHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV--DIADL 299
            ++              + +    Q+V+TE+P         E +  ++   +     I D 
Sbjct: 866  TVTRNSKLGYDIIGNYELNHSINQLVITELPINRWTNDYREYLNSIMATNKEDEGYITDY 925

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
             D S  +  ++ I+L   +  D+  + + +   L++  S + + L           G + 
Sbjct: 926  GDFSSNEFIKIKIKLN-DSGPDIT-DDIEKVFKLKTTISTSNMILFDCNKRIKKYNGAID 983

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ 419
                F    V   TK      +     L  L+  +  ++ ++               ++ 
Sbjct: 984  ILKDFITTRVKYYTKRREYMIKQLQLQLQQLSNQIRFINMIIN-----------NELVIF 1032

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            R      + +L  L  ++      +            +L++ L  LT    + + NE NS
Sbjct: 1033 RKSKKQIVSELKRLNFNTYKPEEEEDEEDNDIEGFNYLLKMSLLSLTLDHINKLNNEYNS 1092

Query: 480  LGIEIKE 486
              +++KE
Sbjct: 1093 KQVQLKE 1099


>gi|118139698|gb|ABK63295.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A   L DL KDTV
Sbjct: 61  DNAAAMRYTEARMTRIAEEALRDLDKDTV 89


>gi|62005849|dbj|BAD91316.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130102|gb|ACV95499.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130118|gb|ACV95507.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 63/83 (75%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IYD L RMAQ WSLR  
Sbjct: 61  PHGDSSIYDTLVRMAQPWSLRYP 83


>gi|194383172|dbj|BAG59142.1| unnamed protein product [Homo sapiens]
          Length = 1178

 Score =  188 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 188/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 652  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 707

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 708  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 767

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 768  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 824

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 825  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 866

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 867  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 925

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 926  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 985

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 986  TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1045

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1046 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1103

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1104 WKEDLAAFVEELDKVESQER 1123


>gi|118139688|gb|ABK63290.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139692|gb|ABK63292.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139694|gb|ABK63293.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139700|gb|ABK63296.1| DNA gyrase subunit A [Arcobacter butzleri]
 gi|118139702|gb|ABK63297.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 66/89 (74%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A  +L DL KDTV
Sbjct: 61  DNAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|73966011|ref|XP_863082.1| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 3
            [Canis familiaris]
          Length = 1533

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 107/506 (21%), Positives = 195/506 (38%), Gaps = 62/506 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 713  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 768

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 769  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLK 828

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 829  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEE- 885

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 886  ---------PLPMLPSYKNFRGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 927

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 928  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 987

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLL-------- 377
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL        
Sbjct: 988  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1047

Query: 378  ---NKARDRAHVLVGLAIAVANLDE-----VVRIIRFSPNPETARRELMQRSWNASDIKD 429
               N+AR     + G  I      +     +++    S   +  +    +      + + 
Sbjct: 1048 KLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEES 1107

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
              +   + S ++   G  +        +L++ L  LT   +D++    N    E++    
Sbjct: 1108 DNENEAEKSDSVRDSGPTF------NYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKR 1161

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTP 515
               S + L        +   + ++T 
Sbjct: 1162 --KSPTDLWKEDLATFVEELEAVETK 1185


>gi|126308150|ref|XP_001369978.1| PREDICTED: similar to DNA topoisomerase II (EC 5.99.1.3) [Monodelphis
            domestica]
          Length = 1548

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/488 (22%), Positives = 192/488 (39%), Gaps = 56/488 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 713  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 768

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 769  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPAKDDQTLK 828

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 829  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEE- 885

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E +  +   I ++E+
Sbjct: 886  ---------PLPMLPSYKNFKGTID-----ELAPNQYVISG----EVSIINSTTIEISEL 927

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I D R+       + ++++     A      L
Sbjct: 928  PVRTWTQVYKEQVLEPMLNGT-DKTPPLITDYREYHTDTTVKFIVKMTEEKLAQAEHAGL 986

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKY--------- 375
            ++   LQ+  + N + L  +     +  T + IL+ F   R +    R ++         
Sbjct: 987  HKVFKLQTNLTCNSMVLFDHVGCLKKYDTALDILRDFFDLRLKYYGLRKEWLTGMLGAES 1046

Query: 376  --LLNKARDRAHVLVGLAIAVANLDE--VVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
              L N+AR     + G  +      +  +  +I+   + +  +     +  +  D ++  
Sbjct: 1047 AKLNNQARFILEKIEGKIVIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKSPGDNEEET 1106

Query: 432  DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            +  D+   T  SD     S      +L++ L  LT   +D++  +      E++      
Sbjct: 1107 EESDNEKETEKSDSATD-SGPTFNYLLDMPLWYLTKEKKDELCRQRTEKEQELENLKR-- 1163

Query: 492  SSRSRLLG 499
             S S L  
Sbjct: 1164 KSPSDLWK 1171


>gi|115379153|ref|ZP_01466275.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115363848|gb|EAU62961.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 49/99 (49%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 14  KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM-MQMGVEWNKKYV 72
           +      + +E +  YL YA++VI  RA+PD+RDGLKPV RR+L+GM     +  + KY 
Sbjct: 35  ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           K A++ G +MG+YHPHG+A+IYDAL R+AQD+SLR  L+
Sbjct: 95  KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLV 133


>gi|73966009|ref|XP_537646.2| PREDICTED: similar to DNA topoisomerase II, alpha isozyme isoform 1
            [Canis familiaris]
          Length = 1532

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 106/506 (20%), Positives = 194/506 (38%), Gaps = 62/506 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDQTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFRGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + V+++     A+     L+
Sbjct: 927  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLL-------- 377
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL        
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 378  ---NKARDRAHVLVGLAIAVANLDE-----VVRIIRFSPNPETARRELMQRSWNASDIKD 429
               N+AR     + G  I      +     +++    S   +  +    +      + + 
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEES 1106

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
              +   + S ++   G  +        +L++ L  LT   +D++    N    E++    
Sbjct: 1107 DNENEAEKSDSVRDSGPTF------NYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKR 1160

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTP 515
               S + L        +   + ++T 
Sbjct: 1161 --KSPTDLWKEDLATFVEELEAVETK 1184


>gi|301779127|ref|XP_002924981.1| PREDICTED: DNA topoisomerase 2-alpha-like [Ailuropoda melanoleuca]
          Length = 1533

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDIREVVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 927  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1092


>gi|255946696|ref|XP_002564115.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
 gi|211591132|emb|CAP97358.1| DNA topoisomerase II top2-Penicillium chrysogenum [Penicillium
            chrysogenum Wisconsin 54-1255]
          Length = 1725

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 104/537 (19%), Positives = 184/537 (34%), Gaps = 64/537 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L    +  ++ +   +K   ++G V  M  YH HG+ ++   +
Sbjct: 807  RSIPSVVDGLKPGQRKVLHTCFRRNLKKD---MKVVELAGHVSGMTAYH-HGDVSLQQTI 862

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV---DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
              +AQ +  S  +  +E  GNFGS     GD  +A RY   RL   A  +     +  + 
Sbjct: 863  VGLAQTFVGSNNINCLEPSGNFGSRLQGGGDCASA-RYIYTRLSPFARKVFHSADEPLLT 921

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +  + DG   EP V     P +L+NG  GI  G +++IP +N  +VV+    ++     +
Sbjct: 922  YNED-DGKKIEPEVFMPVVPMILINGADGIGTGWSSSIPNYNPEDVVNNLKRLMAGEPTE 980

Query: 213  LDALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      G     G      +GI                          +++ +TE+
Sbjct: 981  PMQPWFRGFTGEVVAVGGDRFKFSGIIR--------------------ECGEKEVEITEL 1020

Query: 272  PYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            P +       +K+ E+++ +++     D RD +       +I+L        +   L   
Sbjct: 1021 PIRTWTQDFKDKLEEIIKAEKVPSFIKDYRDYNTHTKVHFIIQLDEKHMKVALTEGLEEK 1080

Query: 331  TSLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              L     + N+VA +      +  T+  ILK F   R +   RR ++ L   +     L
Sbjct: 1081 FKLTKTIATTNLVAFDPEGRITKYATVDDILKEFFVVRLKYYERRKQFQLADLQRDLEKL 1140

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI------------- 434
               A  V  + +   +I     P        +     S + +   +              
Sbjct: 1141 SNQARFVQMIIDGKLVISKKKKPVLIAELKDKGFKPISKVAEAPKMGEDEPVVEEEGEEE 1200

Query: 435  --DDSSYTIGSDGTMYLS-----------EVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              D+ +  + S     LS           E   R I +        +           L 
Sbjct: 1201 SDDNDTQKLSSSFDYLLSMPMWSLTQERVEKLRRQIGDKETEVDVLIKLSKEDIWTRDLD 1260

Query: 482  IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
              I+E    L    R    +      V  +L T              + D    ED 
Sbjct: 1261 EFIQEWRFQLEDEDRRARKVAGLGRRVSAKLATGGGRAAASRKRKAANGDDPDDEDF 1317


>gi|224045386|ref|XP_002197470.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Taeniopygia guttata]
          Length = 1622

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 733  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 788

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 789  IVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLK 848

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 849  FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLD- 905

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+   V+ G    E    DR  + +TE+
Sbjct: 906  ---------PHPMLPNYKNFKG-----TIQELGQNQYVVSG----EIFVVDRNTVEITEL 947

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     EK    I+D ++       + V+++     A      L
Sbjct: 948  PVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1006

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYL 376
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L
Sbjct: 1007 HKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKEWL 1058


>gi|118139704|gb|ABK63298.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  188 bits (477), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 51/88 (57%), Positives = 65/88 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DGD
Sbjct: 2   RITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTV 151
             AA RYTE R+ + A  +L DL KDTV
Sbjct: 62  NAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|119584762|gb|EAW64358.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_b [Homo sapiens]
          Length = 1643

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 187/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 728  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 783

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 784  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 843

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 844  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 900

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 901  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 942

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 943  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1001

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1002 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1061

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1062 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1121

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1122 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1179

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D +++  R
Sbjct: 1180 WKEDLAAFVEELDVVESQER 1199


>gi|27542579|gb|AAO16890.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 53/87 (60%), Positives = 69/87 (79%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WN  Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNTAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVD 152
           AA RYTE RL K AH L+ DL K+TVD
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEKETVD 87


>gi|90017824|gb|ABD83868.1| topoisomerase IV subunit A [Haemophilus sp. COAD591]
          Length = 99

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 52/100 (52%), Positives = 70/100 (70%), Gaps = 3/100 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RY
Sbjct: 1   KSARTVGDVLGKFHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 59

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           TE RL K +  LL +LG+ TVD++ N+DG+  EP  L AR
Sbjct: 60  TESRLSKISEILLSELGQGTVDYQSNFDGTLAEPQYLPAR 99


>gi|47523094|ref|NP_999049.1| DNA topoisomerase 2-alpha [Sus scrofa]
 gi|6094498|sp|O46374|TOP2A_PIG RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|2668414|dbj|BAA23778.1| topoisomersae II [Sus scrofa]
          Length = 1533

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/490 (22%), Positives = 190/490 (38%), Gaps = 62/490 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRLLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 927  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLL-------- 377
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL        
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 378  ---NKARDRAHVLVGLAIAVANLDE-----VVRIIRFSPNPETARRELMQRSWNASDIKD 429
               N+AR     + G  I      +     +++    S   +  +    +      + + 
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAWKEAQQKVPDEEENEES 1106

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
              +   D S ++   G  +        +L++ L  LT   +D++    N    E++    
Sbjct: 1107 DNEKEADKSDSVADSGPTF------NYLLDMPLWYLTKEKKDELCKLRNEKEQELETLKR 1160

Query: 490  ILSSRSRLLG 499
               S S L  
Sbjct: 1161 --KSPSDLWK 1168


>gi|326921999|ref|XP_003207240.1| PREDICTED: DNA topoisomerase 2-beta-like, partial [Meleagris
            gallopavo]
          Length = 1688

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 799  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 854

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 855  IVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLK 914

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 915  FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLD- 971

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+   V+ G    E    DR  + +TE+
Sbjct: 972  ---------PHPMLPNYKNFKG-----TIQELGQNQYVVSG----EIFVVDRNTVEITEL 1013

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     EK    I+D ++       + V+++     A      L
Sbjct: 1014 PVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1072

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYL 376
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L
Sbjct: 1073 HKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKEWL 1124


>gi|65431527|gb|AAY42592.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 84

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 59/84 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPPAAER 129
           LR  L++GQGNFGS   DPPAA R
Sbjct: 61  LRYPLVDGQGNFGSPGNDPPAAMR 84


>gi|241955060|ref|XP_002420251.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
 gi|223643592|emb|CAX42474.1| DNA topoisomerase 2, putative [Candida dubliniensis CD36]
          Length = 1461

 Score =  188 bits (476), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 90/505 (17%), Positives = 175/505 (34%), Gaps = 41/505 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  IT + I+D +    + ++++  + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 724  DPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSE---I 779

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 780  KVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGKDFS 838

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            A RY    L +    + + L      +  + D    EP   L    P +LVNG  GI  G
Sbjct: 839  AARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPV-LPMILVNGAEGIGTG 896

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP++N  ++V     +++    +L  +    +G     G  +            G 
Sbjct: 897  WSTNIPSYNPKDLVANIRRLMNG--EELQEMTPWYKG----WGGDLEPM---------GP 941

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK-IAELVREKRIVDIADLRDESD 304
                + G         D   + +TEIP +     + E  ++    EK    I D+ +   
Sbjct: 942  QKFKVSGRIE----QIDSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH-H 996

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                R V++L        +   L     L S  S+  +              +L+    F
Sbjct: 997  TTSIRFVVKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKDF 1056

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
                +    +   +   D       L +       +  II    +    +++ +      
Sbjct: 1057 YYVRLEY-YQKRKDYMTDNL--QNQLLMLSEQARFIKMIIEKQLSVANKKKKQLVALLEE 1113

Query: 425  SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
             +         D      +   +          +E +              +        
Sbjct: 1114 HNFTKFSK---DGKPIKSNQELLTGEAADEEEEVEEQEGDEDVGDTSIANIQEGETEQTA 1170

Query: 485  KECLDILSSRSRLLGIIKQELLSVK 509
                 I SS   LLG+    L   +
Sbjct: 1171 HVPETIYSSYDYLLGMAIWSLTYER 1195


>gi|119584763|gb|EAW64359.1| topoisomerase (DNA) II beta 180kDa, isoform CRA_c [Homo sapiens]
          Length = 1626

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 187/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 733  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 788

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 789  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 848

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 849  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 905

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 906  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 947

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 948  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1006

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1007 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1066

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1067 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1126

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1127 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1184

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D +++  R
Sbjct: 1185 WKEDLAAFVEELDVVESQER 1204


>gi|291405994|ref|XP_002719184.1| PREDICTED: DNA topoisomerase II, alpha isozyme-like [Oryctolagus
            cuniculus]
          Length = 1181

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 108/475 (22%), Positives = 189/475 (39%), Gaps = 50/475 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPPKDDHTLR 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVING----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + V+++     A+     L+
Sbjct: 927  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ ILK F   R +    R ++LL      + 
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID---LIDDSSYTIG 442
             L   A  +    +   II   P  E  +  L+QR +++  +K   +    + D      
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKEAQQKVPDEEENEE 1105

Query: 443  SDGTMYLSEVQT--------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            SD      +  +          +L++ L  LT   +D++  + N    E++    
Sbjct: 1106 SDTEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDELCRQRNEKEQELETLKR 1160


>gi|155122232|gb|ABT14100.1| hypothetical protein MT325_M546R [Paramecium bursaria chlorella virus
            MT325]
          Length = 1058

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 97/496 (19%), Positives = 183/496 (36%), Gaps = 63/496 (12%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + ++  T++ + D +    + ++    + R+IP + DGLKP  R+ILF   +  + 
Sbjct: 614  QPGNQLDQSKTNIPVPDFIDKELILFSRYD-VERSIPSVVDGLKPSQRKILFAAFKRNLT 672

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
                 +K A+ SG V     YH HG  ++  A+  MAQD+  S  + L+   G FGS   
Sbjct: 673  NE---MKVAQFSGYVAEHSGYH-HGEQSLQGAIVGMAQDYVGSNNMNLLLPNGQFGSRIL 728

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGG 179
             G   A+ RY   +L      + +      + +  + DGS  EP   + A  P +LVNG 
Sbjct: 729  GGKDCASARYIFTKLSPVTRQVFNQADDVLLKYLED-DGSSIEPEWYVPA-IPFLLVNGA 786

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T+IP++N  ++++    +I         ++ +       TG+++    G   
Sbjct: 787  NGIGTGFSTDIPSYNPKDIINNVKRLI-----SGKEMVPMTPWYKEFTGSIVQNDNGTFT 841

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
                 +G   + G             +VV+E+P     +   + +  LV +K IVD  + 
Sbjct: 842  C----KGVAKVSGK-----------SVVVSELPIGTWTSDYKDFLEGLVEKKVIVDFREK 886

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGI 357
              E   +     I+       D+ + +L +        + NM A +      +    + I
Sbjct: 887  HTE---KNVLFEIDFPGE--PDLSILKLEKAIR-----TTNMHAFDPEGKIKKYADPLDI 936

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
            +  +   R+    +R  YLL     +A +         N    + +I       + + E 
Sbjct: 937  ILDWFEVRKTFYTKRKNYLLKDLSHKAAIAE-------NKHRFITLIVNDELVLSKKTES 989

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
            +           L +L     Y         L    +   LE          +      +
Sbjct: 990  V----------ILSELRTLKFYKSEGSYKYLLDMSISSLTLERAEKLRIEAEKLKKELSI 1039

Query: 478  NSLGIEIKECLDILSS 493
                   +     L++
Sbjct: 1040 LENTSRTQMWNTDLNN 1055


>gi|46136571|ref|XP_389977.1| hypothetical protein FG09801.1 [Gibberella zeae PH-1]
          Length = 1650

 Score =  188 bits (476), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 101/528 (19%), Positives = 186/528 (35%), Gaps = 48/528 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DG KP  R++++   +  +  +K   K   ++G V  +  YH HG  ++   +
Sbjct: 786  RSIPSVLDGFKPGQRKVIYACFKRNLIKDK---KVVELAGYVSEQTAYH-HGEQSLQQTI 841

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RYT  RL   A  +   + +     
Sbjct: 842  IGLAQNFVGSNNINCLEPSGNFGSRLAGGSDAASPRYTFTRLSPFARKIFHPMDE----- 896

Query: 154  RPN----Y-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
             PN    Y DG   EP+V     P VLVNG  GI  G ++NIP ++  ++V      +  
Sbjct: 897  -PNLLHHYEDGKKIEPMVYAPILPMVLVNGADGIGTGWSSNIPNYHPADIVQNLRRRMGR 955

Query: 209  PDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
             D +           P F       G  G     A G       GV++  +   +   IV
Sbjct: 956  LDENDTEEKPFETMMPWF------RGWKGTPE--AAGPDRYKFNGVAYANEQKDNE--IV 1005

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            +TE+P +V       K+ +++  +     I D ++ +D       I +       V+   
Sbjct: 1006 ITELPIRVWTDDFKAKLEKVISGELGPSWIKDYKEFNDHSTVHFEIAVDDKHMGKVMEEG 1065

Query: 327  L---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR-------TKYL 376
            +   ++ T   +  ++     +G   +   +  IL+ F  +R ++   R           
Sbjct: 1066 ILERFKLTKQVATSNLVAFDTSGRIRKYEKVEEILEEFYQYRLDMYTDRKKHWLGVYHAD 1125

Query: 377  LNKARDRAHVLV-----GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            L K +++A  +       L +       +V+ +R         R   +++ +  +  D  
Sbjct: 1126 LRKLQNQARFIKEIIDNKLVVGKKKKAVLVQELRDRDYEAFPPRGDKKKTADEEEEDDDN 1185

Query: 432  DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
              ++  S     D    LS        E        + +    +E      E       L
Sbjct: 1186 QDVEGDSEGGARDYDYLLSMPIWSLTAERLEKLKQAIEKKKAEHEELLALSEKDLWCRDL 1245

Query: 492  SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
                            +K  +    R    +             +D  
Sbjct: 1246 DDFMTEWENQLAVDAEIKTNIRRLGRRVSKKIGAGTARGRKAKDDDEY 1293


>gi|17932929|emb|CAC84126.1| ParC topoisomerase IV [Stenotrophomonas maltophilia]
          Length = 91

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/92 (57%), Positives = 65/92 (70%), Gaps = 3/92 (3%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RRI++ M ++G+    K  K AR  G+V+GKYHPHG++A Y+AL  MAQ +
Sbjct: 1   IGDGLKPVQRRIIYSMSELGLNAASKPKKSARTVGDVIGKYHPHGDSACYEALVLMAQPF 60

Query: 105 SLRLLLIEGQGNFGSVDGDPP--AAERYTECR 134
           S R  LIEGQGNFGS D DP   AA RYTE R
Sbjct: 61  SYRYPLIEGQGNFGSSD-DPKSFAAMRYTESR 91


>gi|63849746|emb|CAI72577.1| gyrA protein [Salmonella enterica subsp. enterica serovar Newport]
 gi|63849750|emb|CAI72578.1| gyrA protein [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 83

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/83 (63%), Positives = 67/83 (80%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K
Sbjct: 1   VGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAK 60

Query: 138 AAHFLLDDLGKDTVDFRPNYDGS 160
            AH L+ DL K+TVDF  NYDG+
Sbjct: 61  IAHELMADLEKETVDFVDNYDGT 83


>gi|148222806|ref|NP_001082502.1| topoisomerase (DNA) II alpha 170kDa [Xenopus laevis]
 gi|47939759|gb|AAH72193.1| LOC398512 protein [Xenopus laevis]
          Length = 1579

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 98/466 (21%), Positives = 181/466 (38%), Gaps = 40/466 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 710  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEISLMMT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   L  + + 
Sbjct: 766  IINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPALDDNVLK 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G +  +P ++  E+V+    ++D  + 
Sbjct: 826  FM--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDGDE- 882

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                          P+     G          G    ++ G    E +  D   I ++E+
Sbjct: 883  ---------PQQMLPSYKNFKGV-----IQELGPNQFILNG----EVSVLDSTTIEISEL 924

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D ++       R ++++     A+     L+
Sbjct: 925  PARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVRFLVKMTEQKLAEAEAAGLH 984

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R  +L+      A 
Sbjct: 985  KVFKLQASLTCNSMVLFDHVGCLRKYETVLDILREFFDLRVKYYSLRKDWLVGMLTAEAS 1044

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPE--TARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             L   A  +    E   +I   P  E      +    S      K   +  +        
Sbjct: 1045 KLSNQARFILEKIEGKIVIENKPKKELIQMLVQRGYDSDPVKTWKQTQEKEEAGELIEEE 1104

Query: 444  DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +     +      +L + L  LT   ++++  + ++   E+++   
Sbjct: 1105 EAEANATGPDFNYLLSMPLWYLTKEKKEELCKQRDTKNTELQDLKR 1150


>gi|310722215|ref|YP_003969039.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
 gi|306021058|gb|ADM79593.1| DNA topoisomerase subunit [Aeromonas phage phiAS4]
          Length = 547

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 187/472 (39%), Gaps = 63/472 (13%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + +  +   + N  L +A+  +  RAIP + DG KPV R  ++  ++   +   K+ K 
Sbjct: 102 NLHNRHLQSIINNEALEFAMYTVEERAIPSIIDGFKPVQRFFMYRALEYAKQNKTKFNKV 161

Query: 75  ARISGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A ++G V    YH HG  +   A   +A  W+  + ++EG GNFGS      AA RY  C
Sbjct: 162 AALAGGVSEAGYH-HGEGSAASAGQLIANTWNNNIPVLEGDGNFGSRLVQQAAAPRYVFC 220

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARY-----PNVLVNGGGGIAVGMAT 188
           R+    H    D+ KD +   P +      P  L  R+     P VL NG  GIA G AT
Sbjct: 221 RV----HQNFWDIYKD-ISLSPVHPD----PEHLPPRFYLPVIPMVLANGVKGIATGYAT 271

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            I  H+   +V   +A +   +I    +        FP         GI     +   SI
Sbjct: 272 TIFPHSYESLVKCTLAAVKGEEIPEPEV-------QFPC------FKGIVRRINS--KSI 316

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            I G+  +      + ++++TE+P + ++   +  + +L  + +IV   +        G+
Sbjct: 317 EIEGLYEL----VGQTKLIITEVPVRYDRLEYVSILDKLEEQGKIVGYKEQTS----DGF 368

Query: 309 RVVIELK--------RGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGIL 358
           R  + LK           + +V   ++ +  +L+   S N+  L+      E      ++
Sbjct: 369 RFEVTLKRQDKFGELMEKNPEVAHERIIKMFNLRQNLSQNITVLDENGKLAEYECAADLI 428

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           + FV +R++   +R  +   KA     +     A     ++E + +   S      + +L
Sbjct: 429 RDFVEYRKKYTNQRVIFEKEKAEYSRDLAWAKFAFVNEVIEEKIVLRGKS------KAQL 482

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
           +    +  ++             +       L+E +T  + E  L +     
Sbjct: 483 IAEVKSKPNMAGF-------ENELVGMSIYRLTEDETHKLQEEALKQTKEYD 527


>gi|38640269|ref|NP_944225.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
 gi|33414954|gb|AAQ17997.1| gp52 topoisomerase II medium subunit [Aeromonas phage Aeh1]
          Length = 438

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 96/479 (20%), Positives = 175/479 (36%), Gaps = 50/479 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    I+  + N    +A+  I  RA+P + DGLKPV R ILF +++      +++ K 
Sbjct: 2   QVIKRGISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKN 58

Query: 75  ARISGEVMGKY-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A ++G V+ +Y + HG  A  DA   MA  W+    +I+G+GNFG       AA RY  C
Sbjct: 59  AAVAG-VISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFC 117

Query: 134 RLQKAAHFLLDD---LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
              +    +  D   L + T       DGS      L    P VL+NG  GIA G AT I
Sbjct: 118 SKHERFESMFKDMELLEESTA------DGSILPRYYLPI-LPTVLLNGVSGIATGFATKI 170

Query: 191 PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             H++  V      V+ +   D       I+ P F          G   +      S  +
Sbjct: 171 MPHSVQSVAKCVEQVLKSGKCDEPE----IQFPKF---------FGKILSIEGETQSWKV 217

Query: 251 RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
            G   +      + ++++ E+P + ++   +  + +LV   +IV      DES  +    
Sbjct: 218 EGDYEL----SGKTKLIINELPPKYDRLKYVTHLNKLVETDKIVGY----DESKMKDREF 269

Query: 311 VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEV 368
             ++      DV    + +   L    S  +  ++             ++  FV FR  V
Sbjct: 270 CFKVTLKRDFDVSHENIIKVFKLSQNVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFNV 329

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + +R    +   R++          +  +    +I+      +    ++           
Sbjct: 330 LQKRIDNAIIATREKLDFAQAKVDFIKLVL-ADKIVFNRQTRKQVIEQINA--------- 379

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              D +   +  +      +++E +   + +                       +IKE 
Sbjct: 380 --FDELKTYADQLVQMNLYHMTEDEVAKLEKQVAELQKEHDFWKTTTPRKQYQSDIKEF 436


>gi|312076268|ref|XP_003140785.1| hypothetical protein LOAG_05201 [Loa loa]
 gi|307764049|gb|EFO23283.1| hypothetical protein LOAG_05201 [Loa loa]
          Length = 729

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/476 (21%), Positives = 184/476 (38%), Gaps = 60/476 (12%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   
Sbjct: 211 ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMST 266

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   + ++ + 
Sbjct: 267 IVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSIDENVLR 326

Query: 153 FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           F   Y+ + + EP   C   P VLVNG  GI    +T +P +N  E+VD   A+ID  + 
Sbjct: 327 FL--YEENQKIEPEWYCPVIPTVLVNGTEGIGTAWSTKVPCYNPREIVDNMRALIDGKE- 383

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV----IRGVSHIEKTSGDREQIV 267
                                G+      Y   RG+I      R + + E    + E I 
Sbjct: 384 -----------------PKTFGKKNSIPWYKHFRGTIEQLDDQRFICNGEVAIINNETIE 426

Query: 268 VTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           +TE+P +       E +   +    +K+   I D ++       + V+++          
Sbjct: 427 ITELPIRTWTQTYKEAVLVPMMDGNDKQPAVITDFKEYHTDTTVKFVVKMSSDKLRASKE 486

Query: 325 NQLYRYTSLQSLFSVNMVALNG---YKPERFTLIGILKAFVAFREEVVVRRT---KYLLN 378
             L++   LQS+ +   + L     Y      +  I K F   R++  + R    + LL 
Sbjct: 487 EGLHKVFKLQSVINTTSMVLFDPFGYLRRFENVTDICKEFFEIRKKKYIERKSFQEGLLR 546

Query: 379 KARDRAHVLVGLAIAVANLDEVVR----------IIRFSPNPETAR----RELMQRSWNA 424
              +R        +A    + ++           +I+ S  P+  +        Q     
Sbjct: 547 AQSERLSNQARFILAKIKGEILIENKRKATIVEQLIKMSFKPDPVKKWKEERKKQELMML 606

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEV--QTRAILELRLARLTGLGRDDIRNELN 478
            ++    D  +       +  +  L+        ++ + + +L+   +D +  E  
Sbjct: 607 GEVAQDEDEEEQEENEEDTHQSKELAAKLSDYDYLVGMAILKLSEEEKDKLLKESE 662


>gi|3869382|gb|AAC77432.1| DNA topoisomerase II beta [Homo sapiens]
          Length = 1598

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 109/500 (21%), Positives = 187/500 (37%), Gaps = 49/500 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 705  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 760

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 761  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 820

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 821  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 877

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 878  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 919

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++         V+++     A      L
Sbjct: 920  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVNSVVKMTEEKLAQAEAAGL 978

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 979  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1038

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1039 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1098

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G E+ +      S S L
Sbjct: 1099 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSDL 1156

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1157 WKEDLAAFVEELDKVESQER 1176


>gi|261599209|gb|ACX85667.1| ParC [Streptococcus pneumoniae]
          Length = 106

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 70/105 (66%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
                 ++K Y K A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+
Sbjct: 2   HDTKHTFDKSYRKSAKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSM 61

Query: 121 DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           DGDPPAA RYTE RL + A +LL D+ K TV F  N+D + +EP 
Sbjct: 62  DGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPT 106


>gi|45384180|ref|NP_990413.1| DNA topoisomerase 2-beta [Gallus gallus]
 gi|3122959|sp|O42131|TOP2B_CHICK RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2463529|dbj|BAA22540.1| DNA topoisomeraseII_beta [Gallus gallus]
          Length = 1627

 Score =  187 bits (475), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 40/352 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 738  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 793

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 794  IVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPSVDDNLLK 853

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 854  FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKLPNYDTREIVNNVRRMLDGLD- 910

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+   V+ G    E    DR  + +TE+
Sbjct: 911  ---------PHPMLPNYKNFRG-----TIQELGQNQYVVSG----EIFVVDRNTVEITEL 952

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     EK    I+D ++       + V+++     A      L
Sbjct: 953  PVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1011

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYL 376
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L
Sbjct: 1012 HKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLHYYSLRKEWL 1063


>gi|62005851|dbj|BAD91317.1| putative DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130112|gb|ACV95504.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130128|gb|ACV95512.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY  L RMAQ WSLR  
Sbjct: 61  PHGDSSIYGTLVRMAQPWSLRYP 83


>gi|221132667|ref|XP_002158728.1| PREDICTED: similar to topoisomerase (DNA) II alpha, partial [Hydra
            magnipapillata]
          Length = 1323

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 93/414 (22%), Positives = 166/414 (40%), Gaps = 39/414 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF  M+     +K+ VK A+++G V  +  YH HG  ++   
Sbjct: 702  ERSIPSLVDGFKPGQRKVLFTCMK---RNDKREVKVAQLAGSVAELSAYH-HGEMSLMGT 757

Query: 97   LARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L ++   G FG+  V G   A+ RY    +      +  +     + 
Sbjct: 758  IVNLAQNFVGSNNLNVLLPIGQFGTRHVGGKDSASPRYIFTMMSSLTRLVFPEKDDAVLT 817

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +   +D + + EP   C   P  LVNG  GI  G +T IP  ++ ++V+    +I+  + 
Sbjct: 818  YL--FDDNQKIEPEWYCPIIPMCLVNGAEGIGTGYSTKIPNFDIRDIVENVKRMINGEE- 874

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P FP+     G          G    + +G  +I     D   I +TE+
Sbjct: 875  ---------PQPMFPSYKDFTG-----EIVQEGDQKFICQGTINI----IDETTIEITEL 916

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +    A  E + ++     EK    I D ++       + VI +            L+
Sbjct: 917  PVRTWTQAYKETVLDVYLYGNEKSPPCITDYKEYHTDSTVKFVITMTPEQMVKAEEEGLH 976

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   L S  +++ + L        +  +   I+KAF   R      R K++L        
Sbjct: 977  KKFKLLSSINLSCMVLFDEFGCIKKYESPTEIMKAFFNVRMAKYNERKKFILGMLEAECS 1036

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
             L   A  +    E  +II  + +       L++R + +  +K     +D S +
Sbjct: 1037 KLENQARFILEKIEG-KIIIENRSKRDVITTLVERGYVSDPVKAWKAEVDKSGH 1089


>gi|68480866|ref|XP_715586.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|68480977|ref|XP_715530.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437155|gb|EAK96506.1| DNA topoisomerase II [Candida albicans SC5314]
 gi|46437215|gb|EAK96565.1| DNA topoisomerase II [Candida albicans SC5314]
          Length = 1461

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 82/414 (19%), Positives = 158/414 (38%), Gaps = 38/414 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  IT + I+D +    + ++++  + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 724  DPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSE---I 779

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 780  KVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINVLKPNGSFGSRAAGGKDFS 838

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            A RY    L +    + + L      +  + D    EP   L    P +LVNG  GI  G
Sbjct: 839  AARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPEWYLPV-LPMILVNGAEGIGTG 896

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP++N  ++V     +++    +L  +    +G     G  +            G 
Sbjct: 897  WSTNIPSYNPKDLVTNIRRLMNG--EELQEMTPWYKG----WGGDLEPM---------GP 941

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK-IAELVREKRIVDIADLRDESD 304
                + G         D   + +TEIP +     + E  ++    EK    I D+ +   
Sbjct: 942  QKFKVSGRIE----QIDSNTVEITEIPVKTWTNNVKEFLLSGFGNEKTQPWIKDMEEH-H 996

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
                R VI+L        +   L     L S  S+  +              +L+    F
Sbjct: 997  TTSIRFVIKLTDAEMQKSLRIGLLERFKLVSSLSLANMVAFDPMGRIKKYNDVLEIIKDF 1056

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
                +    +   +   D       L +       +  II    +    +++ +
Sbjct: 1057 YYVRLEY-YQKRKDYMTDNL--QNQLLMLSEQARFIKMIIEKQLSVANKKKKQL 1107


>gi|225678456|gb|EEH16740.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
          Length = 1788

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 102/496 (20%), Positives = 190/496 (38%), Gaps = 44/496 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V  +   +K   ++G V  M  Y  HG+ ++   +
Sbjct: 815  RSIPSVVDGLKPGQRKVLYTCFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDVSLQQTI 870

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 871  VGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLLTY 930

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P VL+NG  GI  G +T+IP +N  ++V     ++D      
Sbjct: 931  NVD-DGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGE---- 985

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 986  ---------PLVPMQPWFRGFTG--EVVSLGGERYKFSGRIS----QVGENEVEITELPI 1030

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       VI+L    +A  I   L     
Sbjct: 1031 RCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFK 1090

Query: 333  LQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            L     + N+VA +      +  +   IL+ F + R +   +R +Y L++ +     L  
Sbjct: 1091 LSKTIATSNLVAFDPEGRITKYDSPEDILREFYSVRIKFYEKRKQYQLSQLQRDLDKLSN 1150

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-------LIDDSSYTIG 442
             A  +  + +   +I   P  +  +    +     S I D          + +D +    
Sbjct: 1151 QARFIQMIIDGKLVISKKPKAKLIQELKEKGFKAFSKISDAAKSGETAPVVEEDDNEEKS 1210

Query: 443  SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG-II 501
                  L       +  + L  LT    + +R ++     EI+    I  S+  +    +
Sbjct: 1211 DSDDAELGADSYDYLFAMPLWSLTQERVEKLRRQIGE--KEIEVDNLIKLSKEDIWRKDL 1268

Query: 502  KQELLSVKDELDTPRR 517
               +   K +L+   R
Sbjct: 1269 DDFIAEWKFQLEDEGR 1284


>gi|118139696|gb|ABK63294.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKSAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R+ + A   L DL KDTV
Sbjct: 61  DNAAAMRYTEVRMTRIAEEALRDLDKDTV 89


>gi|313192272|emb|CBY05944.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 103

 Score =  187 bits (474), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 55/97 (56%), Positives = 71/97 (73%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 4   GHDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGD 63

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS 160
             AA RYT  RL K AH L+ DL K+TV F   Y+  
Sbjct: 64  SAAAMRYTVIRLAKIAHQLMADLEKETVYFLDKYEDK 100


>gi|2909391|emb|CAA76312.1| DNA topoisomerase II alpha [Cricetulus longicaudatus]
          Length = 1526

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 109/481 (22%), Positives = 188/481 (39%), Gaps = 48/481 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 711  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVGEMSSYH-HGEMSLMMT 766

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L      L       T+ 
Sbjct: 767  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLTRLLFPPKDDHTLK 826

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +   P  ++ EVV+    ++D  + 
Sbjct: 827  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKTPNFDIREVVNNIRRLLDGEE- 883

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 884  ---------PLPMLPSYKNFKGTIE-----ELASNQYVING----EVAILNSTTIEISEL 925

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + VI++     A+     L+
Sbjct: 926  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVIKMTEEKLAEAERVGLH 985

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ ILK F   R +    R ++LL      + 
Sbjct: 986  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILKDFFELRLKYYGLRKEWLLGMLGAESA 1045

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L   A  +    +   II   P  E  +  L+QR +++  +K   +          ++ 
Sbjct: 1046 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKEAQQKVPDEEENEE 1104

Query: 446  TMYL-------SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
            +          S      +L++ L  LT   +D++  + N    E+    +   S S L 
Sbjct: 1105 SDNENSDSVAESGPTFNYLLDMPLWYLTKEKKDELCKQRNEKEQELNTLKN--KSPSDLW 1162

Query: 499  G 499
             
Sbjct: 1163 K 1163


>gi|303322098|ref|XP_003071042.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
 gi|240110741|gb|EER28897.1| DNA topoisomerase II, putative [Coccidioides posadasii C735 delta
            SOWgp]
          Length = 1717

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 192/539 (35%), Gaps = 50/539 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+ M +  V+ +   +
Sbjct: 784  DHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNVKKD---M 839

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   + G V  M  Y  HG A++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 840  KVVELGGYVSGMTAYQ-HGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCA 898

Query: 127  AERYTECRLQKAAHFLLDDLG----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            + RY   RL   A  +         K  +D     DG   EP V     P +L+NG  GI
Sbjct: 899  SARYIHTRLSPFARRIFHAADEPLLKSNID-----DGKVIEPEVYVPVVPMILINGADGI 953

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T+IP  N  +VV     ++D   +            +          +GI     
Sbjct: 954  GTGWSTSIPNFNPEDVVANLRRLMDGESLVPMKPWFRGFTGEVTASGDRYKFSGIIK--- 1010

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRD 301
                                  ++ +TE+P +       +K+ E+++ ++      D +D
Sbjct: 1011 -----------------QTGDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKD 1053

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GIL 358
             +       +I++        + + L     L    +   +     +           IL
Sbjct: 1054 YNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAEDIL 1113

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            KAF A R     +R ++LL +           A  V  + +   +I     P+       
Sbjct: 1114 KAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKPKLIEELKE 1173

Query: 419  Q--RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +  +    +         + +     S+    LS      +L + L  LT    + +  +
Sbjct: 1174 KGFKPIPKAVDAAKEGENEPAVEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLRQ 1233

Query: 477  LNSLGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCI 533
            +    +EI     I  S+  L    + + +   +++L+   RR +              
Sbjct: 1234 IGDKELEIDAL--IKLSKEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTSTKLK 1290


>gi|320032749|gb|EFW14700.1| DNA topoisomerase 2 [Coccidioides posadasii str. Silveira]
          Length = 1717

 Score =  187 bits (474), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 100/539 (18%), Positives = 192/539 (35%), Gaps = 50/539 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+ M +  V+ +   +
Sbjct: 784  DHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNVKKD---M 839

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   + G V  M  Y  HG A++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 840  KVVELGGYVSGMTAYQ-HGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCA 898

Query: 127  AERYTECRLQKAAHFLLDDLG----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            + RY   RL   A  +         K  +D     DG   EP V     P +L+NG  GI
Sbjct: 899  SARYIHTRLSPFARRIFHAADEPLLKSNID-----DGKVIEPEVYVPVVPMILINGADGI 953

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T+IP  N  +VV     ++D   +            +          +GI     
Sbjct: 954  GTGWSTSIPNFNPEDVVANLRRLMDGESLVPMKPWFRGFTGEVTASGDRYKFSGIIK--- 1010

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRD 301
                                  ++ +TE+P +       +K+ E+++ ++      D +D
Sbjct: 1011 -----------------QTGDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKD 1053

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GIL 358
             +       +I++        + + L     L    +   +     +           IL
Sbjct: 1054 YNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAEDIL 1113

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            KAF A R     +R ++LL +           A  V  + +   +I     P+       
Sbjct: 1114 KAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKPKLIEELKE 1173

Query: 419  Q--RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            +  +    +         + +     S+    LS      +L + L  LT    + +  +
Sbjct: 1174 KGFKPIPKAVDAAKEGENEPAVEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLRQ 1233

Query: 477  LNSLGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCI 533
            +    +EI     I  S+  L    + + +   +++L+   RR +              
Sbjct: 1234 IGDKELEIDAL--IKLSKEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTSTKLK 1290


>gi|37651722|ref|NP_932596.1| gp52 [Aeromonas phage 44RR2.8t]
 gi|34733022|gb|AAQ81559.1| topoisomerase II medium subunit [Aeromonas phage 44RR2.8t]
          Length = 555

 Score =  187 bits (474), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/456 (22%), Positives = 185/456 (40%), Gaps = 57/456 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + S+   + +  L +A+  +  RAIP L DGLKPV R  ++  ++   +   K+ K 
Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168

Query: 75  ARISGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A ++G V    YH HG  +   A   +A  W+  + ++EG GNFGS      AA RY  C
Sbjct: 169 AALAGGVSEAGYH-HGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFC 227

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR-----YPNVLVNGGGGIAVGMAT 188
           R+ +    +  D+    V           EP  L  R      P VL NG  GIA G AT
Sbjct: 228 RVHQNFWDIYRDIELAPV---------HPEPEHLPPRYYLPVIPMVLANGVKGIATGYAT 278

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NI  H+   ++    A I+   I        ++ P+F         +G+         +I
Sbjct: 279 NIFPHSYKSLIKCTKAAIEGKPIPRLE----VQFPEF---------SGVIR--RVSAKTI 323

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            + G+  +      + ++ +TE+P + ++ + +  + +L  + +IV   +        G+
Sbjct: 324 EVEGLYEL----SGQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYKEQHK----NGF 375

Query: 309 RVVIELKR--------GASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGIL 358
           R  + LKR          + +    ++ +   L+ + + N+  LN      E      ++
Sbjct: 376 RFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVI 435

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           + FV  R +    R +Y   K+     +           +D+ + I          + EL
Sbjct: 436 RDFVEHRRKFTAERVEYERQKSEHARDLAWAKFKFINMVIDDKITI------KGKQKAEL 489

Query: 418 MQRSWNASDIKDLI-DLIDDSSYTIGSDGTMYLSEV 452
           ++   +  D K    +L+  S Y +  D T  L + 
Sbjct: 490 VKEIASNPDFKGFENELVGMSIYRMTEDETYKLQDE 525


>gi|34604732|gb|AAQ79817.1| GyrA [Escherichia coli]
          Length = 79

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 65/79 (82%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|18369812|dbj|BAB84101.1| DNA topoisomerase II [Aspergillus fumigatus]
          Length = 1495

 Score =  186 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 179/477 (37%), Gaps = 43/477 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  +  +   +K   ++G V  M  Y  HG+A++   +
Sbjct: 731  RSIPSVVDGLKPGQRKVLYTCFRRNLRKD---MKVVELAGHVSGMTAYQ-HGDASLQQTI 786

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +        + +
Sbjct: 787  VGLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRVFHAADDPLLTY 846

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP V     P +L+NG  GI  G +++IP +N  ++VD    ++D   +  
Sbjct: 847  NED-DGKKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGQPVKP 905

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G     G      +GI                          +++ +TE+P
Sbjct: 906  MQPWFRGFTGEVTALGGDRFKFSGIIK--------------------ETGDKEVEITELP 945

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ E+++ ++      D +D +       VI++            L    
Sbjct: 946  IRTWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKF 1005

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +  ++  ILK F A R +   RR +Y LN+ +     L 
Sbjct: 1006 KLSKTIATTNLVAFDPEGRITKYASVDDILKEFYAVRLKFYERRKQYQLNELQKELDKLT 1065

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              A  V  + +   +I     P                + D +   +D+      +    
Sbjct: 1066 NQARFVQMIIDGDLVISKKKKPALVAELKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESG 1125

Query: 449  LSEVQT-----RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              E +        +L + L  LT    + +R ++    +EI     I  S+  +   
Sbjct: 1126 NDETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGEKEVEIDAL--IKLSKEDIWKR 1180


>gi|168033077|ref|XP_001769043.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679677|gb|EDQ66121.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1172

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 94/499 (18%), Positives = 177/499 (35%), Gaps = 40/499 (8%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
              ++  D +    + +++   L R+IP + DGLKP  R+ILF   +          K A+
Sbjct: 674  EKINYRDFVNKELILFSMAD-LARSIPSMVDGLKPGQRKILFCCFKRNFVTQA---KVAQ 729

Query: 77   ISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERY 130
             SG V     YH HG A++   +  MAQ++  S  + L+  +G FG+    G   A+ RY
Sbjct: 730  FSGYVSEHSAYH-HGEASLASTIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRY 788

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
                L      L        +D+    DG   EP   C   P VLVNG  GI  G ++ +
Sbjct: 789  IFTCLAPITRALFPQADDVLLDYLKE-DGQSIEPTWYCPIIPLVLVNGSEGIGTGWSSFV 847

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P +N  E+V     ++   +++   +    +G            +G          +  I
Sbjct: 848  PNYNPREIVANLRRLLAGQEMEP--MHPWYKGFKGSIECSATKDSGF---------TYTI 896

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQG 307
             G         D   I ++E+P +       E +  ++    + +   I D R+ +    
Sbjct: 897  TGAID----QIDETTIKISELPVRKWTQDYKEFLDVMMTPSDKNKEPFIKDFREHNTDTK 952

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAF 364
                + L     A  +   L +   L +  S + + L   K    +  T   IL+ F   
Sbjct: 953  VHFELSLSEENMAIALAEGLVKKFKLTTTISTSNMHLFDNKGIIKKYDTPEQILEEFFHI 1012

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP----NPETARRELMQR 420
            R ++ V+R    L       H +      +  + +   I+          +  ++     
Sbjct: 1013 RLDMYVKRKAVQLQNLEYELHKVDNKVRFILGVVKGEIIVNNRKRADLLADLQKKGFTPF 1072

Query: 421  SWNASDIKDLIDLIDD-SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
               +      +   D         +    +       +L + +  LT      +R + + 
Sbjct: 1073 PKKSKSSDPPVVGADPLPEDDEQDEKVKGIRAADYEYLLSMPIGTLTFEKVQQLRGQRDK 1132

Query: 480  LGIEIKECLDILSSRSRLL 498
            +  E++E     ++   L 
Sbjct: 1133 MEGEVEELK--KATPEALW 1149


>gi|5453252|gb|AAD43501.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 81

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 48/81 (59%), Positives = 67/81 (82%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A++VI+ RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++
Sbjct: 1   AMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKSYKKSARIVGDVMGKYHPHGDSS 60

Query: 93  IYDALARMAQDWSLRLLLIEG 113
           IY+A+ R AQD+S R  L++G
Sbjct: 61  IYEAMVRKAQDFSYRYPLVDG 81


>gi|73990502|ref|XP_534241.2| PREDICTED: similar to DNA topoisomerase II, beta isozyme [Canis
            familiaris]
          Length = 2041

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/502 (21%), Positives = 198/502 (39%), Gaps = 53/502 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 1151 ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 1206

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   +  L   +  + + 
Sbjct: 1207 IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLK 1266

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 1267 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 1323

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 1324 ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 1365

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 1366 PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1424

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A
Sbjct: 1425 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--A 1482

Query: 385  HVLVGLAIAVANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I   + + +   + L+QR + +  +K   +  + ++    +
Sbjct: 1483 ESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEET 1542

Query: 444  DGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          S      IL + L  LT    +++  + ++ G E+ +      S S
Sbjct: 1543 QNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPS 1600

Query: 496  RLLGIIKQELLSVKDELDTPRR 517
             L        +   D+++   R
Sbjct: 1601 DLWKEDLAAFVEELDKVEAQER 1622


>gi|50305715|ref|XP_452818.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641951|emb|CAH01669.1| KLLA0C13838p [Kluyveromyces lactis]
          Length = 1435

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 92/512 (17%), Positives = 177/512 (34%), Gaps = 55/512 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + I+D +    + +++   + R+IP + DGLKP  R++++   +  +   K  +
Sbjct: 668  DPKLTEIPISDFINKELILFSLADNI-RSIPSVLDGLKPGQRKVIYACFKRNL---KSEI 723

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A++ G V     YH HG  ++Y  +  +AQD+  S  + L++  G FG+    G   A
Sbjct: 724  KVAQLGGYVSEHTGYH-HGEQSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRATGGKDSA 782

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGI 182
            A RY    L K    + + L     D   NY   D    EP   L    P VLVNG  GI
Sbjct: 783  APRYIFTELNKLTRKIFNTLD----DPLLNYIQDDEQTVEPEWYLPV-IPMVLVNGTEGI 837

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +TNIP  N  ++V+    ++   +++  A                 G  G      
Sbjct: 838  GTGWSTNIPPFNPMDIVNNVKRLMKGEEMEQMAPWY-------------RGWQGSLEKID 884

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLR 300
                     G         D   + +TE+P +   + + E +   +   +K    I D++
Sbjct: 885  P--QKYRTYGRIE----QIDENTLEITELPPKTWTSVIKEHLLLGLSGNDKVKPWIKDIQ 938

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            ++      + +I L             Y    L S  S++ +     + +      +   
Sbjct: 939  EQ-HGATIKFIITLTSDEMEKTRKIGFYERFKLVSTVSLSNMVAFDPQGKIKKYDDVRDI 997

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
               F    +    +   +   +R        ++     + + +I       + +   +  
Sbjct: 998  LSDFYYTRLTY-YQKRKDYIGERL-KWEVEKLSYQV--KFIMMIVEKKLSVSNKPRPVLF 1053

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR-AILELRLARLTGLGRDDIRNELNS 479
                S     I+     +Y           E Q +   L           + +  +    
Sbjct: 1054 EELMSLGFPRINKEGKPTYGKV--------EEQAQIEALNDEDDDDDDEEKSEAEDNAEE 1105

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
                +    +   +   LLG+    L   + E
Sbjct: 1106 SEDVVNGPEEKFGNYDYLLGMKIWALTKERYE 1137


>gi|70992793|ref|XP_751245.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|66848878|gb|EAL89207.1| DNA topoisomerase II [Aspergillus fumigatus Af293]
 gi|159130301|gb|EDP55414.1| DNA topoisomerase II [Aspergillus fumigatus A1163]
          Length = 1660

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/477 (20%), Positives = 179/477 (37%), Gaps = 43/477 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  +  +   +K   ++G V  M  Y  HG+A++   +
Sbjct: 731  RSIPSVVDGLKPGQRKVLYTCFRRNLRKD---MKVVELAGHVSGMTAYQ-HGDASLQQTI 786

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +        + +
Sbjct: 787  VGLAQTFVGSNNINCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRVFHAADDPLLTY 846

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP V     P +L+NG  GI  G +++IP +N  ++VD    ++D   +  
Sbjct: 847  NED-DGKKIEPEVYVPVVPMILINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGQPVKP 905

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G     G      +GI                          +++ +TE+P
Sbjct: 906  MQPWFRGFTGEVTALGGDRFKFSGIIK--------------------ETGDKEVEITELP 945

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ E+++ ++      D +D +       VI++            L    
Sbjct: 946  IRTWTQDFKDKLEEIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKNLQSAREEGLEEKF 1005

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +  ++  ILK F A R +   RR +Y LN+ +     L 
Sbjct: 1006 KLSKTIATTNLVAFDPEGRITKYASVDDILKEFYAVRLKFYERRKQYQLNELQKELDKLT 1065

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              A  V  + +   +I     P                + D +   +D+      +    
Sbjct: 1066 NQARFVQMIIDGDLVISKKKKPALVAELKKHGFKAFPKVIDAVKAGEDAPVVEEEEDESG 1125

Query: 449  LSEVQT-----RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              E +        +L + L  LT    + +R ++    +EI     I  S+  +   
Sbjct: 1126 NDETEVLSSAYDYLLGMPLWSLTHERVEKLRRQIGEKEVEIDAL--IKLSKEDIWKR 1180


>gi|296202778|ref|XP_002748606.1| PREDICTED: DNA topoisomerase 2-alpha [Callithrix jacchus]
          Length = 1531

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/407 (24%), Positives = 167/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + V+++     A+     L+
Sbjct: 927  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1092


>gi|259130110|gb|ACV95503.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130130|gb|ACV95513.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|270055922|gb|ACZ59207.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 63/83 (75%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY+ L RMAQ WSLR  
Sbjct: 61  PHGDSSIYNTLVRMAQPWSLRYP 83


>gi|327283546|ref|XP_003226502.1| PREDICTED: DNA topoisomerase 2-beta-like [Anolis carolinensis]
          Length = 1640

 Score =  186 bits (472), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 148/352 (42%), Gaps = 40/352 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 745  ERSIPSLVDGFKPGQRKVLFTCCK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 800

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 801  IVNLAQNFVGSNNVSLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPAVDDNLLK 860

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  IP ++  E+V+    ++D  D 
Sbjct: 861  FL--YDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDTREIVNNVRRMLDGLD- 917

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+   V+ G    E    DR  + +TE+
Sbjct: 918  ---------PLPMLPNYKNFKG-----AIQELGQNQYVVSG----EIYVVDRNTVEITEL 959

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     EK    I+D ++       + V+++     A      L
Sbjct: 960  PVRTWTQVYKEQVLEPMLNGT-EKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1018

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYL 376
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L
Sbjct: 1019 HKVFKLQTSLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNYYNLRKEWL 1070


>gi|261188733|ref|XP_002620780.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
 gi|239592012|gb|EEQ74593.1| DNA topoisomerase 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1758

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/404 (21%), Positives = 164/404 (40%), Gaps = 36/404 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   ++ V+ +   +K A +SG V+G   Y  HG+A++   +
Sbjct: 807  RSIPSVIDGLKPGQRKVLYTCFKLNVKKD---MKVAELSGYVLGLTAYQ-HGDASLQQTI 862

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +  +     + +
Sbjct: 863  IGLAQNFVGSNNINCLEPSGNFGSRLQGGSDAASPRYIYTRLSPFARRIFHEADGPLLTY 922

Query: 154  RPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + DG   EP        P +L+NG  GI  G +T+IP +N  E+V     ++      
Sbjct: 923  NVD-DGQVIEPETYFPV-VPMILINGADGIGTGWSTSIPNYNPEEIVANIKRLMVGE--- 977

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P  P      G TG     + G       G            +I +TE+P
Sbjct: 978  ----------PVVPMQPWFRGFTG--EVVSMGGERYKFSGRFS----QIGDNEIEITELP 1021

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQL---Y 328
             +       +++ E+++ ++I     D +D +       VI+L    +   I   L    
Sbjct: 1022 IRSWTQDFKDRLEEIIKAEKIPSFIKDYKDYNTHTKVHFVIQLDEKHAKKTIAEGLEEKL 1081

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            + T   +  ++      G   +  +   IL+ F + R ++  +R ++ L++ +     L 
Sbjct: 1082 KLTKTLATSNLVAFDSEGRITKYESPEHILQEFYSVRIKLYEKRKQHQLSQMQKDLEKLS 1141

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
              A  V  + +   +I   P  +  +    +     + + D   
Sbjct: 1142 NQARFVQMIIDGKLVISKKPKAQLVQELKEKGFKAIAKVSDAAK 1185


>gi|119196923|ref|XP_001249065.1| hypothetical protein CIMG_02836 [Coccidioides immitis RS]
          Length = 1635

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 192/540 (35%), Gaps = 51/540 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+ M +  V+ +   +
Sbjct: 701  DHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNVKKD---M 756

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   + G V  M  Y  HG A++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 757  KVVELGGYVSGMTAYQ-HGEASLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDCA 815

Query: 127  AERYTECRLQKAAHFLLDDLG----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
            + RY   RL   A  +         K  +D     DG   EP V     P +L+NG  GI
Sbjct: 816  SARYIHTRLSPFARRIFHAADEPLLKSNID-----DGKVIEPEVYVPVVPMILINGADGI 870

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T+IP  N  ++V     ++D   +            +          +GI     
Sbjct: 871  GTGWSTSIPNFNPEDIVANLRRLMDGESLVPMKPWFRGFTGEVTASGDRYKFSGIIK--- 927

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRD 301
                                  ++ +TE+P +       +K+ E+++ ++      D +D
Sbjct: 928  -----------------QTGDCEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKDYKD 970

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GIL 358
             +       +I++        + + L     L    +   +     +           IL
Sbjct: 971  YNTHSKVHFIIQMDEKHMKKALEDGLEERFKLSKTIATTNMVAFDAEGRITKYDTAEDIL 1030

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLV---GLAIAVANLDEVVRIIRFSPNPETARR 415
            KAF A R     +R ++LL +                 + +   V+   R +   E  + 
Sbjct: 1031 KAFYAVRIRFYEKRKQHLLAQLHKELDKFTNQARFVQMIIDGKLVISKKRKAKLIEELKE 1090

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
            +  +    A D     +          S+    LS      +L + L  LT    + +  
Sbjct: 1091 KGFKPIPKAVDAAKEGENEPAVEEEEESEEDEQLSSDVFDYLLGMPLWSLTQERVEKLLR 1150

Query: 476  ELNSLGIEIKECLDILSSRSRLL-GIIKQELLSVKDELDT-PRRTRIVEGLLDMEDEDCI 533
            ++    +EI     I  S+  L    + + +   +++L+   RR +              
Sbjct: 1151 QIGDKELEIDAL--IKLSKEDLWKRDLDEFITEWRNQLEDEERRAKKARSYGRRTSTKLK 1208


>gi|66392041|ref|YP_238966.1| gp52 [Aeromonas phage 31]
 gi|62114878|gb|AAX63726.1| gp52 [Aeromonas phage 31]
          Length = 554

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/456 (22%), Positives = 186/456 (40%), Gaps = 57/456 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            + + S+   + +  L +A+  +  RAIP L DGLKPV R  ++  ++   +   K+ K 
Sbjct: 109 ELHNRSLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKV 168

Query: 75  ARISGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A ++G V    YH HG  +   A   +A  W+  + ++EG GNFGS      AA RY  C
Sbjct: 169 AALAGGVSEAGYH-HGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQAAAPRYVFC 227

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR-----YPNVLVNGGGGIAVGMAT 188
           R+ +    +  D+    V           EP  L  R      P VL NG  GIA G AT
Sbjct: 228 RVHQNFWDIYRDIELAPV---------HPEPEHLPPRYYLPVIPMVLANGVKGIATGYAT 278

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NI  H+   ++    A I+   I        ++ P+F         +G+         +I
Sbjct: 279 NIFPHSYKSLIKCTKAAIEGKPIPRLE----VQFPEF---------SGVIR--RVSDKTI 323

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
            + G+  +      + ++ +TE+P + ++ + +  + +L  + +IV   +        G+
Sbjct: 324 EVEGLYEL----SGQTKLTITELPVKFDRLSYVILLDKLKDQGKIVSYKEQHK----NGF 375

Query: 309 RVVIELKR--------GASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGIL 358
           R  + LKR          + +    ++ +   L+ + + N+  LN      E      ++
Sbjct: 376 RFDVTLKRQDKFGEQLQNNPEATHEKIIKMFGLRQVLTQNITVLNPEGKLAEYECAEDVI 435

Query: 359 KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE-TARREL 417
           + FV  R +    R +Y   K+           +A A    +  +I      +   + EL
Sbjct: 436 RDFVEHRRKFTAERVEYERQKSEH------ARDLAWAKFKFINMVIDDEITIKGKQKAEL 489

Query: 418 MQRSWNASDIKDLI-DLIDDSSYTIGSDGTMYLSEV 452
           +Q   +  D K    +L+  S Y +  D T  L + 
Sbjct: 490 VQEIASNPDFKGFENELVGMSIYRMTEDETYKLQDE 525


>gi|27542577|gb|AAO16889.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
 gi|27542583|gb|AAO16892.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 87

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 67/86 (77%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDG 61

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGK 148
           D  AA RYTE RL K AH L+ DL K
Sbjct: 62  DSAAAMRYTEIRLAKIAHELMADLEK 87


>gi|297272911|ref|XP_002808175.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like
            [Macaca mulatta]
          Length = 1481

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 99/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 679  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 734

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 735  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 794

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ EVV+    ++D  + 
Sbjct: 795  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREVVNNIRRLMDGEE- 851

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 852  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 893

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 894  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 953

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 954  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1013

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1014 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1059


>gi|315047873|ref|XP_003173311.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
 gi|311341278|gb|EFR00481.1| hypothetical protein MGYG_03483 [Arthroderma gypseum CBS 118893]
          Length = 1672

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 101/578 (17%), Positives = 197/578 (34%), Gaps = 67/578 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V+ +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 803  RSIPSVVDGLKPGQRKVLYTMFKRNVKKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 858

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 859  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLAN 918

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 919  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGD 973

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ ++
Sbjct: 974  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIS 1013

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 1014 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 1073

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R ++LL++ + +  
Sbjct: 1074 EKFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLD 1133

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----LIDDSSYTI 441
             L   A  V  + +   +I         +    +       + D  +       +     
Sbjct: 1134 KLSNQARFVQMIIDGKLVISKKKKALLIQELQEKGFKPFPKVVDTPEPGEAGDVEDEEDE 1193

Query: 442  GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI------------------- 482
                T  LS      +L + L  LT    + +R ++    +                   
Sbjct: 1194 EETATAALSSDAYDYLLSMPLWSLTQERVEKLRRQIGDKEMEVDALIKLTKEDLWKKDLE 1253

Query: 483  -EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
              I E    L         I      +  ++ T  R    +       +D          
Sbjct: 1254 EFITEWRFQLEDEENRRKKIAGRGRRLSSKVKTGSRATAAKKRKAGSGDDSDFDVPKGKK 1313

Query: 542  VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
             +      +  L  Y  + +     +  V   +D    
Sbjct: 1314 ATVNRVQPKGGLLDYLGKSKPKPKTTSHVDGADDSDDF 1351


>gi|301120494|ref|XP_002907974.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
 gi|262103005|gb|EEY61057.1| DNA topoisomerase 2 DNA gyrase B [Phytophthora infestans T30-4]
          Length = 1329

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/619 (18%), Positives = 215/619 (34%), Gaps = 62/619 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R++P + DGLK   R++LF  M+  +      VK A+++G       YH HG A+++  +
Sbjct: 686  RSLPSVVDGLKISQRKVLFACMKRKLTSE---VKVAQLAGYCSEHTAYH-HGEASLHSTI 741

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  L L+   G FG+    G   A+ RY    LQK    +  +     + +
Sbjct: 742  VNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIFTLLQKHTRLVFPEEDDALLRY 801

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EPV      P +LVNG  GI  G +++IP H+   V+D  + ++ + +   
Sbjct: 802  ADD-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCHHPVLVIDNLLKLL-DAEEAG 859

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
            D L  +      P      G   I+    TG+ S V RG         +   + VTE+P 
Sbjct: 860  DDLSIVELSLMTPWAKGFSG--DIRQ---TGKHSFVSRGNVE----QVNTSTVRVTELPV 910

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN-------- 325
                    + + +LV +K I   ++   E D    R  I + R   A    +        
Sbjct: 911  GKWVEDYKKFLWDLVGKKAIRSFSEHHSERD---VRFDISMTRSDLAKYAEDAAENCDAG 967

Query: 326  ------QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
                  +L R  +  S  +++    +G   +  T   +L+ F   R ++  +R +     
Sbjct: 968  DSEALVKLLRLEAPLSTSNMHAFNADGQLVKYETSEDVLRDFYGVRRKLYSKRKR----- 1022

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
                 H+       V  L   +R I+        +  L +R   A  I  L +     + 
Sbjct: 1023 -----HLEQRQTKEVLRLSNRIRFIQEVSTGSLQK-ILRERIPKAELIDLLKEHGFAPAS 1076

Query: 440  TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                +   ++ ++   A+   +       G +D    LN+  +   +       +     
Sbjct: 1077 AFKEEAIDHMGDLGLAAVGREQGKAGDLDGSEDYDYLLNTSLMSFTKEFADRLRKEHDTK 1136

Query: 500  IIKQELLSVKD-----ELDTPR-RTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
              K + L           +  R R  +   L +          D    ++  G    +  
Sbjct: 1137 QDKLQQLQATTPAQLWRNELERLRAVLSHFLNENSATLKRPASDAFGAMAKHGAEVVIVP 1196

Query: 554  SVYR-----AQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSV--LFFSSLGFVYKEKVWRL 606
              ++          G G   +    E            T +        G +Y  ++   
Sbjct: 1197 RNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCS 1256

Query: 607  PIGSPQARGKALINILSLN 625
                         + ++++
Sbjct: 1257 DQYPHVPPEVHFTSRINMS 1275


>gi|296228227|ref|XP_002759705.1| PREDICTED: DNA topoisomerase 2-beta-like [Callithrix jacchus]
          Length = 1620

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 728  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 783

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 784  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 843

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 844  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 900

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 901  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 942

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 943  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1001

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 1002 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1061

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  +K   +  + ++    + 
Sbjct: 1062 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDTQ 1120

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1121 NQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSD 1178

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1179 LWKEDLAAFVEELDKVEAQER 1199


>gi|119581065|gb|EAW60661.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_a [Homo sapiens]
          Length = 837

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/407 (23%), Positives = 167/407 (41%), Gaps = 39/407 (9%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 211 ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 266

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 267 IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 326

Query: 153 FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           F   YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  + 
Sbjct: 327 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE- 383

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      P  P+     G               VI G    E    +   I ++E+
Sbjct: 384 ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 425

Query: 272 PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           P +       E++ E +     K    I D R+       + V+++     A+     L+
Sbjct: 426 PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 485

Query: 329 RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
           +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 486 KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 545

Query: 386 VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 546 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 591


>gi|149639393|ref|XP_001507216.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Ornithorhynchus anatinus]
          Length = 1923

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 108/501 (21%), Positives = 195/501 (38%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +++ VK A+++G V  M  YH HG  A+   
Sbjct: 1036 ERSIPSLVDGFKPGQRKVLFTCCK---RNDRREVKVAQLAGSVAEMSAYH-HGEQALMMT 1091

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 1092 IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 1151

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 1152 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 1208

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 1209 ---------PHPMLPNYKNFRG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 1250

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 1251 PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1309

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 1310 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNYYSLRKEWLMGMLGAES 1369

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I      +   + L+QR + +  +K   +  + ++    + 
Sbjct: 1370 TKLNNQARFILEKIQGKITIENRSKRDL-IQMLVQRGYESDPVKAWKEAQEKAAEEDETQ 1428

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         +      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1429 NQHDDSSSDSGTTTGPDFNYILNMSLWCLTKEKVEELIKQRDAKGRELNDLKR--KSPSD 1486

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1487 LWKEDLAAFVEELDKVEAQER 1507


>gi|292830|gb|AAA61209.1| DNA topoisomerase II (EC 5.99.1.3) [Homo sapiens]
          Length = 1531

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 927  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1092


>gi|149729823|ref|XP_001492165.1| PREDICTED: similar to DNA topoisomerase (ATP-hydrolysing) [Equus
            caballus]
          Length = 1630

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 109/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 740  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 795

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 796  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 855

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++  D 
Sbjct: 856  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD- 912

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 913  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 954

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 955  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1013

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 1014 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1073

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  +K   +  + ++    + 
Sbjct: 1074 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQ 1132

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1133 NQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVNDLKR--KSPSD 1190

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1191 LWKEDLAAFVEELDKVEAQER 1211


>gi|19913406|ref|NP_001058.2| DNA topoisomerase 2-alpha [Homo sapiens]
 gi|13959709|sp|P11388|TOP2A_HUMAN RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|3869316|gb|AAC77388.1| topoisomerase II alpha [Homo sapiens]
 gi|119581067|gb|EAW60663.1| topoisomerase (DNA) II alpha 170kDa, isoform CRA_c [Homo sapiens]
 gi|187954517|gb|AAI40792.1| TOP2A protein [Homo sapiens]
 gi|306921645|dbj|BAJ17902.1| topoisomerase (DNA) II alpha 170kDa [synthetic construct]
          Length = 1531

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 927  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1092


>gi|297701283|ref|XP_002827646.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 2-alpha-like [Pongo
            abelii]
          Length = 1532

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/407 (24%), Positives = 168/407 (41%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 713  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 768

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 769  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 828

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  + 
Sbjct: 829  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE- 885

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 886  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 927

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D R+       + V+++     A+     L+
Sbjct: 928  PIRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 987

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R ++LL      + 
Sbjct: 988  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDFFELRLKYYGLRKEWLLGMLGAESA 1047

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1048 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1093


>gi|1066004|dbj|BAA07236.1| typr II DNA topoisomerase beta isoform [Mus musculus]
          Length = 1612

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 721  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 776

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 777  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 836

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++  D 
Sbjct: 837  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD- 893

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 894  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 935

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 936  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 994

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 995  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1054

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  +K   +  + ++    S 
Sbjct: 1055 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQ 1113

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1114 NQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSD 1171

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1172 LWKEDLAAFVEELDKVEAQER 1192


>gi|259130108|gb|ACV95502.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130126|gb|ACV95511.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+ +IYD L RMAQ WSLR  
Sbjct: 61  PHGDISIYDTLVRMAQPWSLRYP 83


>gi|34328148|ref|NP_033435.2| DNA topoisomerase 2-beta [Mus musculus]
 gi|76363529|sp|Q64511|TOP2B_MOUSE RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|32451610|gb|AAH54541.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|54887373|gb|AAH41106.1| Topoisomerase (DNA) II beta [Mus musculus]
 gi|148688695|gb|EDL20642.1| topoisomerase (DNA) II beta [Mus musculus]
          Length = 1612

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 721  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 776

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 777  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 836

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++  D 
Sbjct: 837  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD- 893

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 894  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 935

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 936  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 994

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 995  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1054

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  +K   +  + ++    S 
Sbjct: 1055 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQ 1113

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1114 NQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSD 1171

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1172 LWKEDLAAFVEELDKVEAQER 1192


>gi|314121841|ref|YP_004063960.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
 gi|313151598|gb|ADR32654.1| gp52 DNA topisomerase II medium subunit [Enterobacteria phage
           vB_EcoM-VR7]
          Length = 444

 Score =  185 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 97/475 (20%), Positives = 188/475 (39%), Gaps = 49/475 (10%)

Query: 18  SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             S+ D +    L+YAI  + GRAIP++ DG KPVHR ++   + +      K+ K A I
Sbjct: 6   PRSLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKVASI 65

Query: 78  SGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           +G V    YH HG A+  +A + +   +     + +GQGNFGS      ++ RY   R+ 
Sbjct: 66  AGGVADYGYH-HGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFARVS 124

Query: 137 KAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           K  + L  D      ++ P +     +P    L    P VL+N   GIAVG AT+I  H+
Sbjct: 125 KNFYNLFKD-----TEYAPVHPDEEHKPPAFYLPV-IPTVLLNATSGIAVGFATDILPHS 178

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             +V +   A+++  +     +   ++ P+F    V L   G         G+  +   +
Sbjct: 179 FQDVKEAVKAIVEGREP----VAPKVKYPEFRGEVVELEEPGKYEL----HGTYKMTSRT 230

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +E          +TEIP Q N      KI + + EK        +D     G+   I+ 
Sbjct: 231 QME----------ITEIPVQWNLEKYTSKILDPLEEK---GFITWKDNCGEHGFGFKIKF 277

Query: 315 KR----GASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEV 368
           ++      + +    ++ +   L    S N+  LN      E    + +++ FV  R+  
Sbjct: 278 RKEYKLDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVRKTY 337

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V  R    + +      +       +  + +   +I+        R++L++    +    
Sbjct: 338 VQVRIDSKIKETEAAFKLARAKVFFIKEVIDGKVVIQG-----KPRKKLIEELQAS---- 388

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              ++  D +  + +    +++  + + + +   A+          +       +
Sbjct: 389 ---EIYGDYAEKLVAMNIYHMTSDEAKKLADEAKAKKAEHEYWKATDVKTEYLND 440


>gi|259130104|gb|ACV95500.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130106|gb|ACV95501.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130120|gb|ACV95508.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130122|gb|ACV95509.1| DNA gyrase alpha subunit [Rhodococcus equi]
 gi|259130124|gb|ACV95510.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+ +IYD L RMAQ WSLR  
Sbjct: 61  PHGDRSIYDTLVRMAQPWSLRYP 83


>gi|267150|sp|Q01320|TOP2A_MOUSE RecName: Full=DNA topoisomerase 2-alpha; AltName: Full=DNA
            topoisomerase II, alpha isozyme
 gi|220616|dbj|BAA02076.1| DNA topoisomerase II [Mus musculus]
          Length = 1528

 Score =  185 bits (470), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 122/506 (24%), Positives = 200/506 (39%), Gaps = 60/506 (11%)

Query: 26   QNSYLTYA----INVIL------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
              SYLTY       +IL       R+IP + DGLKP  R++LF   +     +K+ VK A
Sbjct: 688  STSYLTYNDFINKELILFSNSDNERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVA 744

Query: 76   RISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ R
Sbjct: 745  QLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPR 803

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMAT 188
            Y    L   A  L       T+ F   YD + + EP         VL+NG  GI  G + 
Sbjct: 804  YIFTMLSPLARLLFPPKDDHTLRFL--YDDNQRVEPEWYNPINTMVLINGAEGIGTGWSC 861

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  ++ EVV+    ++D  +            P  P+     G               
Sbjct: 862  KIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIE-----ELASNQY 906

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDR 305
            VI G    E    D   I ++E+P +       E++ E +    EK    I D R+    
Sbjct: 907  VING----EVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDYREYHTD 962

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFV 362
               + VI++     A+     L++   LQS  + N + L  +     +  T++ IL+ F 
Sbjct: 963  TTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLDILRDFF 1022

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
              R +    R ++LL      +  L   A  +    +   +I   P  E  +  L+QR +
Sbjct: 1023 ELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKV-LIQRGY 1081

Query: 423  NASDIKDLID---LIDDSSYTIGSDGTMYLSEVQTRA------ILELRLARLTGLGRDDI 473
            ++  +K   +    + D      SD     S+    A      +L++ L  LT   +D++
Sbjct: 1082 DSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLTKEKKDEL 1141

Query: 474  RNELNSLGIEIKECLDILSSRSRLLG 499
              + N    E+        S S L  
Sbjct: 1142 CKQRNEKEQELNTLK--QKSPSDLWK 1165


>gi|297491323|ref|XP_002698796.1| PREDICTED: topoisomerase (DNA) II beta 180kDa [Bos taurus]
 gi|296472299|gb|DAA14414.1| topoisomerase (DNA) II beta 180kDa [Bos taurus]
          Length = 1707

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 110/484 (22%), Positives = 192/484 (39%), Gaps = 53/484 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 820  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 875

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 876  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 935

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 936  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 992

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 993  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 1034

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 1035 PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1093

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A
Sbjct: 1094 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--A 1151

Query: 385  HVLVGLAIAVANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I   + + +   + L+QR + +  +K   +  + ++    S
Sbjct: 1152 ESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEES 1211

Query: 444  DGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          S      IL + L  LT    +++  + ++ G E+ +      S S
Sbjct: 1212 QNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKR--KSPS 1269

Query: 496  RLLG 499
             L  
Sbjct: 1270 DLWK 1273


>gi|3024753|sp|Q64399|TOP2B_CRILO RecName: Full=DNA topoisomerase 2-beta; AltName: Full=DNA
            topoisomerase II, beta isozyme
 gi|2137065|pir||S59969 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) isoform beta -
            Chinese hamster
 gi|790988|emb|CAA60173.1| DNA topoisomerase (ATP-hydrolysing) [Cricetulus longicaudatus]
          Length = 1612

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 109/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 721  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 776

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 777  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 836

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 837  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 893

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 894  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 935

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 936  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 994

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 995  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1054

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  ++   +  + ++    + 
Sbjct: 1055 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVRAWKEAQEKAAEEEDTQ 1113

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1114 NQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSD 1171

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1172 LWKEDLAAFVEELDKVEAQER 1192


>gi|28277299|gb|AAH44276.1| LOC398512 protein [Xenopus laevis]
          Length = 1132

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 98/444 (22%), Positives = 172/444 (38%), Gaps = 40/444 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 710  ERSIPSLVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEISLMMT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   L  + + 
Sbjct: 766  IINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLFPALDDNVLK 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G +  +P ++  E+V+    ++D  + 
Sbjct: 826  FM--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWSCKLPNYDTREIVNNIRRMLDGDE- 882

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                          P+     G          G    ++ G    E +  D   I ++E+
Sbjct: 883  ---------PQQMLPSYKNFKGV-----IQELGPNQFILNG----EVSVLDSTTIEISEL 924

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +    EK    I D ++       R ++++     A+     L+
Sbjct: 925  PARTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVRFLVKMTEQKLAEAEAAGLH 984

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+ F   R +    R  +L+      A 
Sbjct: 985  KVFKLQASLTCNSMVLFDHVGCLRKYETVLDILREFFDLRVKYYSLRKDWLVGMLTAEAS 1044

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARR--ELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             L   A  +    E   +I   P  E  +   +    S      K   +  +        
Sbjct: 1045 KLSNQARFILEKIEGKIVIENKPKKELIQMLVQRGYDSDPVKTWKQTQEKEEAGELIEEE 1104

Query: 444  DGTMYLSEVQTRAILELRLARLTG 467
            +     +      +L + L  LT 
Sbjct: 1105 EAEANATGPDFNYLLSMPLWYLTK 1128


>gi|259130114|gb|ACV95505.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY  L RMAQ WSLR  
Sbjct: 61  PHGDSSIYHTLVRMAQPWSLRYP 83


>gi|281203022|gb|EFA77223.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1265

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 90/494 (18%), Positives = 178/494 (36%), Gaps = 48/494 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R+ILF   +  +      +K A++SG V     YH HG  ++   +
Sbjct: 804  RSIPSVMDGLKPGQRKILFACFKRNLTHE---IKVAQLSGYVAEHTAYH-HGEQSLSSTI 859

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQD+  S  + LI   G FG+  + GD  A+ RY   +L +    + +DL +++++F
Sbjct: 860  VKMAQDFVGSNNIPLISQGGQFGTRLMGGDDSASPRYIFTKLNQITRLIYNDLDEESLNF 919

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G   +P       P +LVNG  GI VGM+ ++P ++  ++++  +  + N     
Sbjct: 920  LEE-EGESIQPSYYIPIIPMILVNGSSGIGVGMSNSVPLYSPIDLIEYLLLKLSNQRQ-- 976

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK---TSGDREQIVVTE 270
                                   +   Y   +G+IVI G S           R  + + E
Sbjct: 977  --------------------MKKLIPWYRGFKGNIVISGKSFKTSGLIKITGRNSLSIRE 1016

Query: 271  IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            IP     +   + + +L+ +  I    +   E+           +     +   N+L   
Sbjct: 1017 IPIGKWTSDYKQVLNDLIEQDIIKSFTEENTENTVNFTVSTTYEQMERLEESTENELLSL 1076

Query: 331  TSLQSLFSVNMVAL--NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
              L SL   N+     +G   +  ++  I+  F   R +  V+R          R +++ 
Sbjct: 1077 FKLTSLVHPNLTLFAPDGTVKKYESVEEIVDEFYGVRLDAYVKR----------RENIMK 1126

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
             L   +      +  I+   + +     + + +           L  +            
Sbjct: 1127 KLQQQIDKHKVTINFIQLIASGKVKIGGVSKDNVIKDLEAKGFHLEGNQQPEETFTYLFN 1186

Query: 449  LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            L  ++        L  L     ++           + +   +    + L     +    V
Sbjct: 1187 LPILEMTQEKITTLTNLYTKKTEEFNAIQAQTADNLWKTDLLQLRDALLKDASYKREKEV 1246

Query: 509  KDELDTPRRTRIVE 522
             +     R+    +
Sbjct: 1247 VEIAPKSRKRTTKQ 1260


>gi|328550504|ref|NP_001127186.1| DNA topoisomerase 2-beta [Pongo abelii]
 gi|55725810|emb|CAH89685.1| hypothetical protein [Pongo abelii]
          Length = 1620

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 108/500 (21%), Positives = 188/500 (37%), Gaps = 50/500 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 728  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 783

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 784  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLAR-LFPAVDDNLLK 842

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 843  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 899

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 900  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 941

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 942  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1000

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK--ARD 382
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+    A  
Sbjct: 1001 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1060

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
                     I      ++    R   +      +    S      K+  +   +   T  
Sbjct: 1061 TKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQN 1120

Query: 443  SDGTM-----YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                        S      IL + L  LT    +++  + ++ G ++ +      S S L
Sbjct: 1121 QHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGRDVNDLKR--KSPSDL 1178

Query: 498  LGIIKQELLSVKDELDTPRR 517
                    +   D++++  R
Sbjct: 1179 WKEDLAAFVEELDKVESQER 1198


>gi|320593621|gb|EFX06030.1| DNA topoisomerase 2 [Grosmannia clavigera kw1407]
          Length = 1724

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 95/483 (19%), Positives = 188/483 (38%), Gaps = 47/483 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++++  ++  +  +    K   ++G V  +  YH HG+A+++  +
Sbjct: 832  RSIPSVVDGLKPGQRKVIYTCLKKNIVKD---QKVFELAGSVSKLAAYH-HGDASLHQTI 887

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  + + L +  ++ 
Sbjct: 888  VGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIFTRLSPFARRVFNPLDEPVLE- 946

Query: 154  RPNYD-GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD------GCVAVI 206
              N D GS  EP       P VL+NG  GI  G +T+IP +N  +VV+      G +A  
Sbjct: 947  -NNIDEGSVIEPKNYAPIVPMVLINGADGIGTGWSTSIPNYNPVDVVNNLKRRMGRLAGH 1005

Query: 207  DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            +N ++  ++++   RG  +          G              R    I +   +  +I
Sbjct: 1006 ENEELPFESMIPWFRG--WKGTPEPDSVPG------------RYRFNGIIYQDDRNPNEI 1051

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADVILN 325
            VV+E+P ++       K+ E++R ++    I D ++ +D +    VI+++       +  
Sbjct: 1052 VVSELPVRMWTDDFKAKLEEVIRAEKSPSWIKDYKEFNDHRNVHFVIQMEDKHVQAAVDE 1111

Query: 326  QL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             L   ++ +      ++    +NG       +  IL+ F  +R  +   R K+ L     
Sbjct: 1112 GLIDRFKLSKTVGTTNLVAFDINGQIRRYEKVEDILEEFFNYRLNMYGLRKKHWLGVYHT 1171

Query: 383  RAHVLVGLAIAVANLDEVVR-----IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
                   L      + E++        +         R     ++             D 
Sbjct: 1172 E---FRKLNNQYRFVQEIMDGKLVVSKKKKDVVVEELRARSYEAFPKESSDPKKAKTKDD 1228

Query: 438  SYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                  D     +      +L + +   T    D ++ ++++   +       + S   L
Sbjct: 1229 DDNEDEDEIDGGTARDYDYLLSMPIWSFTQERLDRLKKQIDAKKAQ--YDELDVKSEKDL 1286

Query: 498  LGI 500
               
Sbjct: 1287 WCF 1289


>gi|189193341|ref|XP_001933009.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187978573|gb|EDU45199.1| DNA topoisomerase 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1722

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/499 (17%), Positives = 184/499 (36%), Gaps = 44/499 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             +S  D +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   VK   +
Sbjct: 799  DISYDDFVNKELILFSMADNV-RSIPSVIDGLKPGQRKVLYTCFRRNIKKD---VKVVEL 854

Query: 78   SGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +G V G   Y  HG A++   +  +AQ++  +  +  +E  GNFGS    G   A+ RY 
Sbjct: 855  AGSVSGSTDY-AHGEASMQGTIVNLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYI 913

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              RL   A  +        + +  + DG   EP +     P +L+NG  GI  G ++ IP
Sbjct: 914  YTRLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIGTGWSSEIP 972

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
              N  +++   +     P    D +  +I      TG        I        G++   
Sbjct: 973  NFNPMDII-ANIRRRMEPGATKDDMTPMIPWYKGFTGTTT----EIGPDRYQFTGTVR-- 1025

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRV 310
                         ++ +TE+P +       EK+ E+++ ++      D  D +       
Sbjct: 1026 --------QTGDNEVEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVHF 1077

Query: 311  VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +I+++    A+ +   L  Y  L    S + +              +L     F      
Sbjct: 1078 IIKMEDKYMAEAVTKGLEEYFKLFKPQSTSNLVAFDAHGRIHKYATVLDIIEEFYHI--- 1134

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSP-NPETARRELMQRSWNA----- 424
             R +Y   + + +  V+    + + N  + +++I          ++ ++ +         
Sbjct: 1135 -RLRYYEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLTVSKKKKAVLVQELKKLGFTP 1193

Query: 425  ----SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                 + K   ++ D        D  + +S      +L + +  LT    + +  ++   
Sbjct: 1194 FPKVEEAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGEK 1253

Query: 481  GIEIKECLDILSSRSRLLG 499
              EI     I  S   +  
Sbjct: 1254 QHEID--TLIKLSPKDIWN 1270


>gi|224458674|gb|ACN43200.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 269

 Score =  185 bits (469), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 126/280 (45%), Positives = 179/280 (63%), Gaps = 26/280 (9%)

Query: 241 YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
           Y +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLR
Sbjct: 2   YESGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLR 61

Query: 301 DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
           DESDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ 
Sbjct: 62  DESDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEH 121

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           ++  ++ V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++
Sbjct: 122 YLDHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ 181

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                       L+E Q +AIL++RL RLTGL R+ I  E  SL
Sbjct: 182 --------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSL 215

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
              I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 216 VKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 255


>gi|311992744|ref|YP_004009612.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
 gi|298684527|gb|ADI96488.1| gp52 topoisomerase II medium subunit [Acinetobacter phage Ac42]
          Length = 442

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 98/362 (27%), Positives = 162/362 (44%), Gaps = 37/362 (10%)

Query: 31  TYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM-GKYHPHG 89
            YAI  +  RAIP++ DG+KPVHR +L+  MQ+     +K  K A ++G V    YH HG
Sbjct: 17  EYAIYTVEQRAIPNMIDGMKPVHRFMLYRAMQLAKGDKEKMHKLASVAGGVADAGYH-HG 75

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
             +  DA A MA  WS     ++G+GNFGS      AA RY  CR+ +    +  D   +
Sbjct: 76  EGSAQDAGALMANTWSNNFPFLDGEGNFGSRLVQQAAASRYIFCRISENFSKVFKD---E 132

Query: 150 TVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
            V   P ++    +P    L    P VL+NG  GIA G ATNI  H++  V++       
Sbjct: 133 NV--APVHEDPEHKPPRFYLPV-IPVVLLNGVEGIATGYATNILPHSIKSVIECTR-QAL 188

Query: 208 NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
           N  +D+          ++P  +  + R G K       G+  I   + +E          
Sbjct: 189 NGVVDIKE-----PSVEYPKFSGKIYRDGPKCEL---HGTYKITSKTQME---------- 230

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ- 326
           +TEIPY  ++A  +EK+ + + +K         D   + G+   I++++ A  ++     
Sbjct: 231 ITEIPYSFDRAKYVEKVLDPLEDK---GFISYSDNCGKNGFGFKIKMRKEAGLELTEENH 287

Query: 327 --LYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             + +   L    S N+  ++         + + ++K FV  R E V +R    + +   
Sbjct: 288 DKIMKMFGLIERLSQNITVIDENGKLRVFESAVELIKHFVEVRTEYVKKRIHAKIIETDS 347

Query: 383 RA 384
           +A
Sbjct: 348 KA 349


>gi|310795452|gb|EFQ30913.1| topoisomerase IV [Glomerella graminicola M1.001]
          Length = 1779

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 74/371 (19%), Positives = 148/371 (39%), Gaps = 24/371 (6%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++++   +  +  +    K   ++G +  +  YH HG  ++   +
Sbjct: 800  RSIPSVVDGLKPGQRKVIYACFKRNLVKD---QKVVELAGYISEQTSYH-HGEVSLQQTI 855

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  ++ 
Sbjct: 856  IGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHTRLSPFARKIFSPLDEPNLE- 914

Query: 154  RPNY-DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
             P Y DG   EP V     P +L NG  GI  G +T+IP ++  ++V+     +   D  
Sbjct: 915  -PQYEDGKRIEPKVYAPIIPMILCNGADGIGTGWSTSIPNYHPIDIVNNLKRRMGRLDPS 973

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                        +  G         K+ Y          G+  I++ +G+   ++VTE+P
Sbjct: 974  NPEDAAFQPMMPWFRGWKGTPEQSEKDRYKF-------NGICEIDERTGE---VIVTELP 1023

Query: 273  YQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             ++       K+ E++   +    I D ++ +D +    VI++    + D++ + L    
Sbjct: 1024 IRMWTDDFKAKLEEVISGTKGPVWIKDYKEFNDHKNVHFVIQMDDKHTKDILADGLLERF 1083

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L    + + +     + +      +      F    +    +   +           L+
Sbjct: 1084 KLSKQIATSNLVAFDTRGQIRKYEKVEDILEEFYNYRLDMYAQRKKHWLGVYHSDFRKLS 1143

Query: 392  IAVANLDEVVR 402
                 + E++ 
Sbjct: 1144 EQARFIREIIE 1154


>gi|259130132|gb|ACV95514.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  184 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PHG+++IY  L RMAQ WSLR  
Sbjct: 61  PHGDSSIYYTLVRMAQPWSLRYP 83


>gi|94471628|gb|ABF21080.1| DNA gyrase subunit A [Acholeplasma multilocale]
          Length = 345

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 101/404 (25%), Positives = 186/404 (46%), Gaps = 61/404 (15%)

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL RL GL R+ I  E+N +   I     ++S +     ++K++L  +  +    RRT  
Sbjct: 1   RLQRLVGLEREKIAEEMNQIQSRIDYLTQLISDKEEQNRVLKEQLSDIALKYGDDRRTET 60

Query: 521 VEGLLDMED-EDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
           +   +     E+ I     ++ +S  GY++RV    +R Q+RGG+G S     D+     
Sbjct: 61  INESVMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGISVNSSNDDPISIA 120

Query: 580 LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILS-LNQGERITTIMPFPE 638
             +      VLFF++ G V++ K + +   S  +RG  ++N L+ L   ++IT I+P   
Sbjct: 121 T-MGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTPEDKITAILPMRN 179

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
           ++  +   Y+ F T+ G ++R  +S F  IN++GKIA+ L   D++++V   T E+ + +
Sbjct: 180 EKEKFK--YLTFVTEAGMIKRTDISLFDSINQNGKIAITLKDDDQLVTVMPTTGEDTVFI 237

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
             K G+ +R     +R  + R + GV+GI L + D ++  A+  +               
Sbjct: 238 ANKSGKVIRINEDIVRPLS-RTATGVKGIKLDE-DDIVVGAVTSYGI------------- 282

Query: 759 SAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR 818
                                                  + I T+S KG  K+T+  ++R
Sbjct: 283 ---------------------------------------EAITTISSKGNFKKTALDEYR 303

Query: 819 ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           IS R+GKGI+  ++++  + G   A+    + D I+++S  G L
Sbjct: 304 ISGRNGKGIKVMNLNE--KTGDFKAIIAARETDLILIISSDGNL 345



 Score = 94.5 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 52/264 (19%)

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QINRSGKIAMKLDSRDEILSVETCT 691
           +M   ++E   +   ++  ++ G +RR    +F  Q      I++   + D I       
Sbjct: 65  VMNIQDEELIPDVKTMILLSEEGYIRRVDPEEFRIQKRGGRGISVNSSNDDPISIATMGK 124

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
             + +L  T  G+  R     IR    R S G+  ++   G                   
Sbjct: 125 MRDWVLFFTNSGKVFRTKAYNIRQ-YSRTSRGLPIVNFLNG------------------- 164

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
                                      +  +   +    +  K K +++  V+E G  KR
Sbjct: 165 --------------------------LTPEDKITAILPMRNEKEKFKYLTFVTEAGMIKR 198

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T    F   N++GK   A  +        LV V P    D + + +  G +IR+  + +R
Sbjct: 199 TDISLFDSINQNGK--IAITLKD---DDQLVTVMPTTGEDTVFIANKSGKVIRINEDIVR 253

Query: 872 IASRATKGVVIFSTAKDERVVSVE 895
             SR   GV      +D+ VV   
Sbjct: 254 PLSRTATGVKGIKLDEDDIVVGAV 277



 Score = 68.3 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 64/159 (40%), Gaps = 8/159 (5%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           I    D          +     +  +S    +    +   ++  ++   + +EL    + 
Sbjct: 20  IQSRIDYLTQLISDKEEQNRVLKEQLSDIALKYGDDRRTETINESVMNIQDEELIPDVKT 79

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++ +SE+G+ +R    +FRI  R G+G     V+  N+   +         D ++  ++ 
Sbjct: 80  MILLSEEGYIRRVDPEEFRIQKRGGRG---ISVNSSND-DPISIATMGKMRDWVLFFTNS 135

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS----TAKDERVVSV 894
           G + R     IR  SR ++G+ I +       ++++ ++
Sbjct: 136 GKVFRTKAYNIRQYSRTSRGLPIVNFLNGLTPEDKITAI 174


>gi|284027745|gb|ADB66699.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 105

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 56/105 (53%), Positives = 73/105 (69%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M  +G +W K   K AR+ G+V+G YHPHG++A YD + RMAQ +SLR +L++GQG 
Sbjct: 1   LYAMNVLGHDWIKAKKKAARVVGDVIGIYHPHGDSAEYDTIVRMAQPFSLRHMLVDGQGI 60

Query: 117 FGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSF 161
           FGS+DGD  AA R+TE RL   AH L  DL  +TVDF  NYDG+ 
Sbjct: 61  FGSIDGDCAAAMRHTEIRLALIAHRLKADLEGETVDFVDNYDGTE 105


>gi|39975823|ref|XP_369302.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
 gi|145011529|gb|EDJ96185.1| hypothetical protein MGG_06162 [Magnaporthe oryzae 70-15]
          Length = 1680

 Score =  184 bits (468), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 91/504 (18%), Positives = 187/504 (37%), Gaps = 46/504 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +  +  +K   K   ++G V  K  YH HG A++   +
Sbjct: 813  RSIPSMIDGLKPGQRKVIFACFKQNLVKDK---KVVELAGYVSEKAAYH-HGEASLQQTI 868

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDT--- 150
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  + + L +     
Sbjct: 869  IGLAQNYVGSNNVNCLEPSGNFGSRLQGGSDAASARYIHTRLSPFARRVFNPLDEPVLQH 928

Query: 151  -VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP V     P VLVNG  GI  G +T+IP ++  E+V      +   
Sbjct: 929  QVD-----DGKAIEPKVYAPVIPMVLVNGADGIGTGWSTSIPNYHPEEIVRNIKRRMGRL 983

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            D+  +   E       P      G  G        R      G+++++    +  ++V+T
Sbjct: 984  DVPEEQEFE-------PMTPWWRGWKGTPEPEDASRIRFKFNGIANLDD--KNPNEVVIT 1034

Query: 270  EIPYQVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADV--ILNQ 326
            E+P ++       ++ E++R ++    I D ++ +D +    +I+L      +     N 
Sbjct: 1035 ELPIRMWTDDFKARLEEIIRAEKTPSWIKDYKEFNDHKNVHFIIQLDEKHMKEFRDSPNL 1094

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
            L     LQ   ++  +       +      +      F    +        +  R     
Sbjct: 1095 LLERFKLQKNVAITNLVAFDTNGQIRKYDKVEDILEEFYHYRLNVYAARKAHWLRVFDAD 1154

Query: 387  LVGLAIAVANLDEVV---------------RIIRFSPNPETARRELMQRSWNASDIKDLI 431
               L      + E++               + +R        + E  +++ +  +  +  
Sbjct: 1155 YRKLTNQYRFISEIIDGKLVVSKKKKSVLVQELRQRKYEPFPKGETGKKAQDEEEEFEDE 1214

Query: 432  DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            +  +             L+  +   + +   A+       + ++E +    ++ + +   
Sbjct: 1215 EEDERQETNKQQMAIWSLTHERLERLKKQLEAKKAEFDELNSKSEKDLWCKDLDDFVMEW 1274

Query: 492  SSRSRLLGIIKQELLSVKDELDTP 515
             ++ +L   I+  +  +   +   
Sbjct: 1275 ENQLKLDAEIQTNIRRMGRRVSRK 1298


>gi|291045133|ref|NP_001094328.1| topoisomerase II beta [Rattus norvegicus]
 gi|109945583|dbj|BAE96971.1| DNA topoisomerase IIbeta [Rattus norvegicus]
          Length = 1614

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 109/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 721  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 776

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 777  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 836

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++  D 
Sbjct: 837  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD- 893

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 894  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 935

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 936  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 994

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 995  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1054

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  +K   +  + ++    + 
Sbjct: 1055 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDAQ 1113

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1114 NPHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSD 1171

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1172 LWKEDLAAFVEELDKVEAQER 1192


>gi|327309598|ref|XP_003239490.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
 gi|326459746|gb|EGD85199.1| DNA topoisomerase II [Trichophyton rubrum CBS 118892]
          Length = 1674

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 97/499 (19%), Positives = 188/499 (37%), Gaps = 51/499 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNVRRD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 861  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 920

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 921  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 975

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 976  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       VI+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLE 1075

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1135

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID-----LIDDSSYT 440
             L   A  V  + +   +I         +    +       +    +      I++    
Sbjct: 1136 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKVVGTPEPGEAGDIEEEEDE 1195

Query: 441  IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                 +  +S      +L + L  LT    D +R ++    +E+   + +          
Sbjct: 1196 EEETASAAVSSDAYDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDTLIKLTK-EDLWRKD 1254

Query: 501  IKQELLSVKDELDT--PRR 517
            + + +   + +L+    RR
Sbjct: 1255 LDEFISEWRFQLEDEETRR 1273


>gi|118139690|gb|ABK63291.1| DNA gyrase subunit A [Arcobacter butzleri]
          Length = 89

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 65/89 (73%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           + +     Y K ARI G+V+GKYHPHG+ ++YDAL RMAQ++SLR  L++GQGNFGS+DG
Sbjct: 1   LSITSKFAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDG 60

Query: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTV 151
           D  AA RYTE R  + A  +L DL KDTV
Sbjct: 61  DNAAAMRYTEVRTTRIAEEVLRDLDKDTV 89


>gi|47216863|emb|CAG11670.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1568

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 80/356 (22%), Positives = 146/356 (41%), Gaps = 35/356 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF  ++     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 847  ERSIPSLVDGLKPGQRKVLFTCLK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 902

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L +++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 903  IVNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRYIFTMLSPLAKLLFPAVDSNLLK 962

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G A  IP +++ E+V+       N  +
Sbjct: 963  FL--YDDNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKIPNYDVREIVN-----NINRML 1015

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                 ++++            G  G+   +  G+   ++ G    E +  D+  + +TE+
Sbjct: 1016 SRQEPLQMLP--------SYKGFKGVI--HELGQNQYLVSG----EVSVIDKNTVEITEL 1061

Query: 272  PYQVNKAAMLEKI---AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +    A  E +        +K    I+D ++       + ++ +     A      L+
Sbjct: 1062 PVRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTVKFLVRMSEEKLAQAEAAGLH 1121

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +   LQS  + N +    +      L   +     +     + +  + L     + 
Sbjct: 1122 KVFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESVQDILKEFFELRLHYYKL 1177


>gi|311993263|ref|YP_004010129.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
 gi|284178101|gb|ADB81767.1| gp52 topoisomerase II, medium subunit [Enterobacteria phage CC31]
          Length = 460

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 108/512 (21%), Positives = 190/512 (37%), Gaps = 76/512 (14%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M + +  S  +         I +E +     +AI  +  RAIP+L DG KPV R ++   
Sbjct: 8   MAKQVDDSIGQLNLRDLQSIIDNEAK----EFAIYTVENRAIPNLIDGFKPVQRFVIARA 63

Query: 61  MQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           + +     +K+ K A ++G V  +G YH HG  +  DA A MA  W+    L++GQGNFG
Sbjct: 64  LDLSRGNKEKFHKLASVAGGVADLG-YH-HGEGSAQDAGALMANTWNNNYPLLDGQGNFG 121

Query: 119 SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLV 176
           S      AA RY  CR+          + KDT +  P +      P    L    P VL+
Sbjct: 122 SRLVQKAAASRYIFCRIS----DNFRKVYKDT-EIAPEHKDKEHVPPAFYLPI-IPTVLL 175

Query: 177 NGGGGIAVGMATNIPTHNLGEVVDG-CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
           NG  GIA G AT I  H+   VV+   +A+    D + +  +   RG             
Sbjct: 176 NGVQGIATGYATKILPHSFESVVECTKLALQGKLDKEPEVQIPQFRG------------- 222

Query: 236 GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
                     GSI  RG+      S    Q+ ++EIP + ++   +EK+ E + +K    
Sbjct: 223 ---EVVRLEDGSIECRGLYKFTSAS----QMYISEIPAKFDRETYVEKVLEPMVDKN--- 272

Query: 296 IADLRDESDRQGYRVVIELKRGASADVI-----LNQLYRYTSLQSLFSVNMVALNGYKPE 350
                D+  + G+   ++ K+              ++ R   L    S  +V ++     
Sbjct: 273 FISYVDDCSKTGFGFKVKFKKDYMLGECDEKYRHEKIMRDFKLVEKMSQFIVVIDENGKL 332

Query: 351 RFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFS 407
                    ++K FV  R+  +V+R ++ + +            +A+A    +  +I  S
Sbjct: 333 NDKFQSSSELIKHFVEVRKTYIVKRIEHKIKECD------EAFKLALAKAMFIKEVIEGS 386

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
              +   R+ +     +                                ++ + +  +T 
Sbjct: 387 IVIQGKTRKQLTSELESRPTYA----------------------PFADKLVSMNIYHITS 424

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                +  +   L  E+K   +       +  
Sbjct: 425 DEAKKLAQQAKDLKAELKYWQETTPETEYMKD 456


>gi|34604734|gb|AAQ79818.1| GyrA [Escherichia coli]
          Length = 79

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 49/79 (62%), Positives = 64/79 (81%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|126341720|ref|XP_001380856.1| PREDICTED: similar to DNA topoisomerase 2-beta (DNA topoisomerase II,
            beta isozyme) [Monodelphis domestica]
          Length = 1756

 Score =  184 bits (467), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 147/353 (41%), Gaps = 42/353 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 868  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 923

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 924  IVNLAQNFVGSNNVNLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPSVDDNLLK 983

Query: 153  FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            F   YD + + EP   +    P VL+NG  GI  G A  +P ++  E+V+    ++D  D
Sbjct: 984  FL--YDDNQRVEPEWYMPI-IPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD 1040

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                        P  P      G          G+    + G    E    DR  + +TE
Sbjct: 1041 ----------PHPMLPNYKNFKG-----TIQEIGQNQYAVSG----EIFVVDRNTVEITE 1081

Query: 271  IPY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            +P     QV K  +LE +     +K    I+D ++       + V+++            
Sbjct: 1082 LPVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLVQAEAAG 1140

Query: 327  LYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYL 376
            L++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L
Sbjct: 1141 LHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLNYYSLRKEWL 1193


>gi|301782147|ref|XP_002926491.1| PREDICTED: DNA topoisomerase 2-beta-like [Ailuropoda melanoleuca]
          Length = 1608

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 198/502 (39%), Gaps = 53/502 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 719  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 774

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   +  L   +  + + 
Sbjct: 775  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLK 834

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 835  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 891

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 892  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 933

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 934  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 992

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A
Sbjct: 993  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--A 1050

Query: 385  HVLVGLAIAVANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I   + + +   + L+QR + +  +K   +  + ++    +
Sbjct: 1051 ESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEET 1110

Query: 444  DGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          S      IL + L  LT    +++  + +S G E+ +      S S
Sbjct: 1111 QNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKR--KSPS 1168

Query: 496  RLLGIIKQELLSVKDELDTPRR 517
             L        +   D+++   R
Sbjct: 1169 DLWKEDLAAFVEELDKVEAQER 1190


>gi|291399726|ref|XP_002716252.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Oryctolagus
            cuniculus]
          Length = 1667

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 110/501 (21%), Positives = 196/501 (39%), Gaps = 51/501 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF  +      +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 776  ERSIPSLVDGFKPGQRKVLFTCL---NRNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 831

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 832  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLARLLFPAVDDNLLK 891

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 892  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 948

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 949  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 990

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 991  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1049

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      +
Sbjct: 1050 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAES 1109

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    +    I    + +   + L+QR + +  +K   +  + ++    + 
Sbjct: 1110 TKLNNQARFILEKIQGKITIEN-RSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEETQ 1168

Query: 445  GTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                         S      IL + L  LT    +++  + ++ G E+ +      S S 
Sbjct: 1169 NQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSD 1226

Query: 497  LLGIIKQELLSVKDELDTPRR 517
            L        +   D+++   R
Sbjct: 1227 LWKEDLAAFVEELDKVEAQER 1247


>gi|259130116|gb|ACV95506.1| DNA gyrase alpha subunit [Rhodococcus equi]
          Length = 83

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 62/83 (74%)

Query: 27  NSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYH 86
           +SY+ YA++VI+GRA+PD+RDGLKPVHRR+L+ M   G   ++ YVK AR   + MG YH
Sbjct: 1   SSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVKSARPVADTMGNYH 60

Query: 87  PHGNAAIYDALARMAQDWSLRLL 109
           PH +++IYD L RMAQ WSLR  
Sbjct: 61  PHCDSSIYDTLVRMAQPWSLRYP 83


>gi|255729204|ref|XP_002549527.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
 gi|240132596|gb|EER32153.1| DNA topoisomerase 2 [Candida tropicalis MYA-3404]
          Length = 1398

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 166/440 (37%), Gaps = 46/440 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  +   K  +
Sbjct: 803  DPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKL---KSEI 858

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 859  KVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGKDFS 917

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGI 182
            A RY    L +    + + L     D   NY   D    EP   L    P +LVNG  GI
Sbjct: 918  AARYIFTELNEITRKIFNPLD----DPLYNYVQDDEQTVEPEWYLPV-LPMILVNGAEGI 972

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +TNIP++N  ++V     +++    +L  +    +G             G      
Sbjct: 973  GTGWSTNIPSYNPKDLVANIKRLMNG--EELQEMTPWYKG-----------WDGDIE--Q 1017

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            +G     I G            ++ +TE+P +V      E +      ++        +E
Sbjct: 1018 SGPQKYKITGRIE----QVGDNEVDITELPVKVWTNNYKEFLLAGFGTEKTPAWIKDMEE 1073

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
                  + V++L        +   L     L S  S+  +              +L+   
Sbjct: 1074 HHTTSIKFVVKLTDAEMQKSLRMGLMERFKLISSLSLGNMVAFDSMGRIKKYTDVLEILK 1133

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             F       R +Y   +       L    I ++     V++I    + + +     ++  
Sbjct: 1134 EFYYL----RLEYYEKRKSYMVDKLQSELITLSEKARFVKLI---IDKKLSISNKKKKDL 1186

Query: 423  NASDIKDLIDLIDDSSYTIG 442
             +  I +    +  +     
Sbjct: 1187 ISELIANNFKKLKANGEQQD 1206


>gi|308814624|ref|YP_003934898.1| topoisomerase II medium subunit [Shigella phage SP18]
 gi|308206216|gb|ADO19615.1| topoisomerase II medium subunit [Shigella phage SP18]
          Length = 443

 Score =  184 bits (466), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 96/478 (20%), Positives = 188/478 (39%), Gaps = 49/478 (10%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            +    + D +    L+YAI  + GRAIP++ DG KPVHR ++   + +      K+ K 
Sbjct: 2   QLNKRDLKDIIDVEALSYAIYTVEGRAIPNMIDGFKPVHRFVMARALDLARGDKNKFHKV 61

Query: 75  ARISGEVM-GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A I+G V    YH HG A+  +A + +   +     + +GQGNFGS      ++ RY   
Sbjct: 62  ASIAGGVADYGYH-HGEASAEEATSGLVATYKNEYPMFDGQGNFGSRMVPEASSARYVFA 120

Query: 134 RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIP 191
           R+ K  + L  D      ++ P +     +P    L    P VL+N   GIAVG AT+I 
Sbjct: 121 RVSKNFYNLFKD-----TEYAPVHPDEEHKPPAFYLPV-IPTVLLNATSGIAVGFATDIL 174

Query: 192 THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
            H+  +V +   A+++  +     +   ++ P+F    V L   G         G+  + 
Sbjct: 175 PHSFQDVKEAVKAIVEGREP----VAPKVKYPEFRGEVVELEEPGKYEL----HGTYKMT 226

Query: 252 GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
             + +E          +TEIP Q N      KI + + EK        +D     G+   
Sbjct: 227 SRTQME----------ITEIPVQWNLEKYTSKILDPLEEK---GFITWKDNCGEHGFGFK 273

Query: 312 IELKR----GASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFR 365
           I+ ++      + +    ++ +   L    S N+  LN      E    + +++ FV  R
Sbjct: 274 IKFRKEYKLDGTEEENHEKIMKDFGLIEKLSQNLTVLNHKGKLAEYTNTLDLIRDFVDVR 333

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
           +  V  R    + +      +       +  + +   +I+        R++L++    + 
Sbjct: 334 KTYVQVRIDSKIKETEAAFKLARAKVFFIKEVIDGKVVIQG-----KPRKKLIEELQAS- 387

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                 ++  D +  + +    +++  + + + +   A+          +       +
Sbjct: 388 ------EIYGDYAEKLVAMNIYHMTSDEAKKLADEAKAKKAEHEYWKTTDVKTEYLND 439


>gi|170575369|ref|XP_001893211.1| DNA topoisomerase II, alpha isozyme [Brugia malayi]
 gi|158600906|gb|EDP37957.1| DNA topoisomerase II, alpha isozyme, putative [Brugia malayi]
          Length = 1511

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 103/505 (20%), Positives = 183/505 (36%), Gaps = 63/505 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   
Sbjct: 737  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMST 792

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   + ++ + 
Sbjct: 793  IVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSIDENVLR 852

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   ++ + + EP   C   P VLVNG  GI    +T +P +N  E+VD   A+ID  + 
Sbjct: 853  FL--FEENQKIEPEWYCPVIPTVLVNGAEGIGTAWSTKVPCYNPREIVDNMRALIDGKE- 909

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G     +           R V + E    + E I +TE+
Sbjct: 910  ---------PKPLIPWYKHFRGTIEQLDDQ---------RFVCNGEVAVINNETIEITEL 951

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E +   +    +K+   I D ++       + VI++            L+
Sbjct: 952  PIRTWTQTYKETVLVPMMDGNDKQPAFITDFKEYHTDTTVKFVIKMNGDKLRASKEEGLH 1011

Query: 329  RYTSLQSLFSVNMVALNGYK-------------PERFTLIGILKAFVAFREEVVVRRT-- 373
            +   LQ++ +   +    Y                   +  I K F   R++  + R   
Sbjct: 1012 KVFKLQTVINTTSMVYEHYSRVCQVLFDPFGYLRRFENVTDICKEFFEIRKKKYIERKSF 1071

Query: 374  -KYLLNKARDRAHVLVGLAIAVANLDEVVR----------IIRFSPNPETARRELMQRSW 422
             + LL    +R        +A    + ++           +I+ S  P+  ++   +R  
Sbjct: 1072 QEGLLRAQSERLSNQARFILAKIKGEILIENKRKAAIVEQLIKMSFKPDPVKKWKEERKK 1131

Query: 423  NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                +   I   +D      ++   Y S+     + +     L G+    +  E     +
Sbjct: 1132 QELIMSGEITQDEDEEEQEENEEDAYQSKELANKLSDYD--YLVGMAILKLSEEEKDKLL 1189

Query: 483  EIKECLDILSSRSRLLGIIKQELLS 507
               E   I       +         
Sbjct: 1190 RESEAKLIELKSLEEMTWADLWNND 1214


>gi|119473123|ref|XP_001258508.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
 gi|119406660|gb|EAW16611.1| DNA topoisomerase II [Neosartorya fischeri NRRL 181]
          Length = 1735

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 98/504 (19%), Positives = 193/504 (38%), Gaps = 44/504 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++     R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 777  DHSVEKITYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 832

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+A++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 833  KVVELAGHVSGMTAYQ-HGDASLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGQDCA 891

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +        + +  + DG   EP V     P +L+NG  GI  G 
Sbjct: 892  SARYIYTRLSPFARRMFHAADDPLLTYNED-DGKKIEPEVYVPVVPLILINGADGIGTGW 950

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  ++VD    ++D+  +           G     G      +GI        
Sbjct: 951  SSSIPNYNPEDIVDNLKRLMDSQPVKPMQPWFRGFTGEVTALGGDRFKFSGIIK------ 1004

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ E+++ ++      D +D + 
Sbjct: 1005 --------------ETGDKEVEITELPIRTWTQDFKDKLEEIIKAEKTPSFIKDYKDYNT 1050

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI++        +   L     L     + N+VA +      +  ++  ILK F
Sbjct: 1051 HTKVHFVIQMDEKNIKSAVAEGLEEKFKLSKTIATTNLVAFDPEGRITKYASVDDILKEF 1110

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R +   RR +Y L++ +     L   A  V  + +   +I     P           
Sbjct: 1111 YAVRLKFYERRKQYQLSELQKELDKLTNQARFVQMIIDGDLVISKKKKPVLVAELKKHGF 1170

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT-----RAILELRLARLTGLGRDDIRNE 476
                 + D +   +D+      +      E +        +L + L  LT    + +R +
Sbjct: 1171 KAFPKVIDAVKAGEDAPVVEEEEDESGNDETEVLSSAYDYLLGMPLWSLTHERVEKLRRQ 1230

Query: 477  LNSLGIEIKECLDILSSRSRLLGI 500
            +    +E+     I  S+  +   
Sbjct: 1231 IGEKEVEMDAL--IKLSKEDIWKR 1252


>gi|330924028|ref|XP_003300481.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
 gi|311325363|gb|EFQ91408.1| hypothetical protein PTT_11728 [Pyrenophora teres f. teres 0-1]
          Length = 1723

 Score =  184 bits (466), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 88/499 (17%), Positives = 183/499 (36%), Gaps = 44/499 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             +S  D +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   VK   +
Sbjct: 801  DISYDDFVNKELILFSMADNV-RSIPSVIDGLKPGQRKVLYTCFRRNIKKD---VKVVEL 856

Query: 78   SGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +G V G   Y  HG A++   +  +AQ++  +  +  +E  GNFGS    G   A+ RY 
Sbjct: 857  AGSVSGSTDY-AHGEASMQGTIVNLAQNFVGTNNINFLEPSGNFGSRLKGGADAASARYI 915

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              RL   A  +        + +  + DG   EP +     P +L+NG  GI  G ++ IP
Sbjct: 916  YTRLSPFARRIFHGHDDALLKYGES-DGHKIEPEMFVPILPTILINGSSGIGTGWSSEIP 974

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
              N  ++++  +     P    + +  +I      TG               G       
Sbjct: 975  NFNPMDIIEN-IKRRMQPGATKEDMTPMIPWYKGFTGTTT----------ELGPDRYQFT 1023

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRV 310
            G            ++ +TE+P +       EK+ E+++ ++      D  D +       
Sbjct: 1024 GTVR----QTGDNEVEITELPVRYWTQDFKEKLEEIIKAEKAPSYIKDYIDYNTPDRVHF 1079

Query: 311  VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
            +I+++    A+ +   L  Y  L    S + +              +L     F      
Sbjct: 1080 IIKMEDKYMAEAVTKGLEEYFKLFKPQSTSNLVAFDAHGRIHKYATVLDIIEEFYHV--- 1136

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-------- 422
             R +Y   + + +  V+    + + N  + +++I       + +++ +            
Sbjct: 1137 -RLRYYEKRKQHQLQVMEKEHLKMTNQAKFIQMIIDGKLIVSKKKKAVLVQELKKLGFTP 1195

Query: 423  --NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                 + K   ++ D        D  + +S      +L + +  LT    + +  ++   
Sbjct: 1196 FPKVEEAKQAGEVEDYQEDEASEDADVEVSANDYDYLLGMAIWSLTQERVEKLMKQIGEK 1255

Query: 481  GIEIKECLDILSSRSRLLG 499
              EI     I  S   +  
Sbjct: 1256 QHEID--TLIKLSPKDIWK 1272


>gi|149584135|ref|XP_001519680.1| PREDICTED: similar to DNA topoisomerase II [Ornithorhynchus anatinus]
          Length = 1746

 Score =  183 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 100/408 (24%), Positives = 171/408 (41%), Gaps = 41/408 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 740  ERSIPSMVDGLKPGQRKVLFTCFR---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 795

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L      +T+ 
Sbjct: 796  IINLAQNFVGSNNVNLLQPIGQFGTRLHGGKDSASPRYIFTMLSPLARLLFPVKDDNTLK 855

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VLVNG  GI  G +  +P +++ EVV+    ++D  + 
Sbjct: 856  FL--YDDNQRVEPEWYIPIVPMVLVNGAEGIGTGWSCKLPNYDVREVVNNIRRMMDGEE- 912

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E +  D   I ++E+
Sbjct: 913  ---------PLPMLPSYKNFKGTID-----ELAPNQYVING----EVSILDSTTIEISEL 954

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     EK    I D R+       + ++++     A+     L
Sbjct: 955  PVRTWTQVYKEQVLEPMLNGT-EKTPALIVDYREYHTDTTVKFIVKMTEQKLAEAEAAGL 1013

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T + IL+ F   R +    R ++L+      +
Sbjct: 1014 HKVFKLQTNLTCNSMVLFDHVGCLKKYDTALDILRDFFELRLKYYGLRKEWLVGMLGAES 1073

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
              L   A  +    E   +I   P  E  +  L+QR +++  +K   +
Sbjct: 1074 ARLNNQARFILEKIEGKIVIENKPKKELIKV-LIQRGYDSDPVKAWKE 1120


>gi|281341246|gb|EFB16830.1| hypothetical protein PANDA_016140 [Ailuropoda melanoleuca]
          Length = 1599

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 109/484 (22%), Positives = 192/484 (39%), Gaps = 53/484 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 710  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   +  L   +  + + 
Sbjct: 766  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSSLSRLLFPAVDDNLLK 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 826  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 882

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 883  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 924

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 925  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 983

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A
Sbjct: 984  HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--A 1041

Query: 385  HVLVGLAIAVANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I   + + +   + L+QR + +  +K   +  + ++    +
Sbjct: 1042 ESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEET 1101

Query: 444  DGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          S      IL + L  LT    +++  + +S G E+ +      S S
Sbjct: 1102 QNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDSKGREVNDLKR--KSPS 1159

Query: 496  RLLG 499
             L  
Sbjct: 1160 DLWK 1163


>gi|4218221|emb|CAA09762.1| DNA topoisomerase (ATP-hydrolysing) [Homo sapiens]
          Length = 1531

 Score =  183 bits (465), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/407 (23%), Positives = 166/407 (40%), Gaps = 39/407 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 712  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSSYH-HGEMSLMMT 767

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L       T+ 
Sbjct: 768  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTMLSSLARLLFPPKDDHTLK 827

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G +  IP  ++ E+V+    ++D  + 
Sbjct: 828  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFDVREIVNNIRRLMDGEE- 884

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G               VI G    E    +   I ++E+
Sbjct: 885  ---------PLPMLPSYKNFKGTIE-----ELAPNQYVISG----EVAILNSTTIEISEL 926

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E++ E +     K    I D R+       + V+++     A+     L+
Sbjct: 927  PVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMTEEKLAEAERVGLH 986

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + N + L  +     +  T++ IL+     R +    R ++LL      + 
Sbjct: 987  KVFKLQTSLTCNSMVLFDHVGCLKKYDTVLDILRDLFELRLKYYGLRKEWLLGMLGAESA 1046

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  +    +   II   P  E  +  L+QR +++  +K   +
Sbjct: 1047 KLNNQARFILEKIDGKIIIENKPKKELIKV-LIQRGYDSDPVKAWKE 1092


>gi|300176867|emb|CBK25436.2| unnamed protein product [Blastocystis hominis]
          Length = 1573

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/544 (20%), Positives = 186/544 (34%), Gaps = 72/544 (13%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  ++ +D M    + ++      R+IP + DGLKP  R++LFG  +  +      +K  
Sbjct: 686  VDKMAYSDFMDKELIQFSRYD-NARSIPCVVDGLKPSQRKVLFGAFKRKLTSE---IKVV 741

Query: 76   RISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            + SG V     YH HG  ++ D +  MAQD+  S  + L    G FGS    G   A+ R
Sbjct: 742  QFSGYVSEHAAYH-HGEQSLNDTIIGMAQDFVGSNNINLFVPAGQFGSRLLGGKDAASPR 800

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            Y    L      +  +      D   NY   +G   EP   L    P VLVNG  GI  G
Sbjct: 801  YIYTYLSPITRLIFKEDD----DLLCNYLVEEGQSIEPEFYLPI-IPMVLVNGAEGIGTG 855

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T IP +N  E+ +  +A ++N       L    RG    TG +     G         
Sbjct: 856  YSTKIPNYNPVEIANYIIAKLNNEKP--PELHPWWRG---FTGDIYKRPKG--------- 901

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR-EKRIVDIADLRDESD 304
               +IRG         D    V+TE+P         + + E++  EK+   IAD ++   
Sbjct: 902  --YLIRGRIT----KVDDLTYVITELPIGRWTQDYKQILTEMMLPEKKAPVIADFKENHT 955

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQ---SLFSVNMVALNGYKPERFTLIGILKAF 361
                   + L    +  +    LY++  L+   +  + N+ +  G      +   I+  F
Sbjct: 956  DTTVHFTVMLTPEQAQALQGQDLYKFFKLEAAITTSNFNLFSSTGQITHYASPQHIIDEF 1015

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF--------------- 406
              FR      R  +LL K       L  +   +  + E   II                 
Sbjct: 1016 FEFRLPYYQERKDFLLAKFEKEIRRLSNMTRFILEVVEGKLIINNRPRKDIMQDLVKRKY 1075

Query: 407  -------------SPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
                         S + E A+++  +   +     + +  +      + S     L++  
Sbjct: 1076 DPIYPEAKKTSSKSGDVEIAKQDEKEEGVDLDSADENLSKLLKGYNYLLSMKIWSLTKEL 1135

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               + +        +              ++   L  L    R     K      +    
Sbjct: 1136 VDELKKNLETAQKKMQELQDTPPSQLWKNDLDAFLSQLLELERQRMKEKAWEEKNRKRSA 1195

Query: 514  TPRR 517
              RR
Sbjct: 1196 KNRR 1199


>gi|290995679|ref|XP_002680410.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284094031|gb|EFC47666.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1135

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 145/359 (40%), Gaps = 38/359 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+ILF  ++  +   K  +K A+++G V     YH HG  ++Y  +
Sbjct: 688  RSIPSIVDGLKPSQRKILFACLKRDL---KDEIKVAQLAGYVSEHSAYH-HGEQSLYGTI 743

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  +  + L+   G FG+    GD  A+ RY   RL K    +        +D+
Sbjct: 744  TSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIYTRLNKLTRLIFLKEDDQILDY 803

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +   DG   EP   L    P +LVNG  G+  G +T+IP+ N  +++D    ++D     
Sbjct: 804  QEE-DGMIIEPKFYLPI-IPMLLVNGAEGMGTGWSTSIPSFNPIDLIDSLNILLD----S 857

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATG----RGSIVIRGVSHIEKTSGDREQIVV 268
                +  ++ P         G  G      +G    +G   ++      +         +
Sbjct: 858  NAENIGNVKLPSL--DMWARGFKGKIEMNDSGKFISKGIFKMKSRGDSIEFD-------I 908

Query: 269  TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            +E+P           +  LV  K+ +  + + + +        I +      D       
Sbjct: 909  SELPIGEWTENYKSHLQSLV--KKGLIKSKITERNTENSVGFTIAIND---PDEFSESQL 963

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +   L+  FS++ + +   N    +   +  I+K F   R     +R  +L+ +   + 
Sbjct: 964  KKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSYYHQRKSHLMKQLEKQI 1022


>gi|27542597|gb|AAO16899.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 51/82 (62%), Positives = 64/82 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGK 148
           A RYTE RL K AH L+ DL K
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|297464683|ref|XP_001254710.3| PREDICTED: DNA topoisomerase II, beta isozyme [Bos taurus]
          Length = 1908

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 197/502 (39%), Gaps = 53/502 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG   +   
Sbjct: 731  ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVTLMMT 786

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 787  IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 846

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 847  FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 903

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 904  ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 945

Query: 272  PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 946  PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 1004

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A
Sbjct: 1005 HKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--A 1062

Query: 385  HVLVGLAIAVANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
                    A   L+++   I   + + +   + L+QR + +  +K   +  + ++    S
Sbjct: 1063 ESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEES 1122

Query: 444  DGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                          S      IL + L  LT    +++  + ++ G E+ +      S S
Sbjct: 1123 QNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKR--KSPS 1180

Query: 496  RLLGIIKQELLSVKDELDTPRR 517
             L        +   D+++   R
Sbjct: 1181 DLWKEDLAAFVEELDKVEAQER 1202


>gi|207108362|ref|ZP_03242524.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 220

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 112/254 (44%), Gaps = 60/254 (23%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKI-AMKLDSRDEILSVETCTQE-NDILLTTK 701
           +   + F TK+G V+R  LS+F        I A+ LD  DE++S +   +    +L+ + 
Sbjct: 3   DERSLAFFTKNGVVKRTNLSEFGSNRSYSGIRAIVLDEGDELVSAKVVDKNAKHLLIASH 62

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQ 761
           LG  ++FP+  +R   GRN+ GV GI L K D V+   ++                    
Sbjct: 63  LGIFIKFPLEDVREM-GRNARGVIGIKLNKNDFVVGAVVISD------------------ 103

Query: 762 RRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISN 821
                                                 +L+VSE G GK+T +  +R  +
Sbjct: 104 ----------------------------------DGNKLLSVSENGLGKQTLAEAYRGQS 129

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGV 880
           R GKGI    +++  + G LV+V  V+D +  +++++    +IRV + +IR   R   GV
Sbjct: 130 RGGKGIIGMRLTQ--KTGNLVSVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGV 187

Query: 881 VIFSTAKDERVVSV 894
            + +TA  ++V+ V
Sbjct: 188 KLINTA--DKVMYV 199


>gi|261599207|gb|ACX85666.1| ParC [Streptococcus pneumoniae]
          Length = 101

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 50/97 (51%), Positives = 68/97 (70%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + Y K A+  G +MG +HPHG+ +IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA 
Sbjct: 1   QSYRKSAKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAM 60

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           RYTE RL + A +LL D+ K TV F  N+D + +EP 
Sbjct: 61  RYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPT 97


>gi|242772741|ref|XP_002478098.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
 gi|218721717|gb|EED21135.1| DNA topoisomerase II [Talaromyces stipitatus ATCC 10500]
          Length = 1678

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 94/496 (18%), Positives = 188/496 (37%), Gaps = 43/496 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V+ +   +K   ++G V  M  Y  HG+ ++   +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTCFKRNVKKD---MKVVELAGHVSGMTAYQ-HGDTSLQQTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 861  VGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFHQADEPLLTY 920

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +++IP +N  EVV     ++D  + + 
Sbjct: 921  NED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEEVVANLKRMMDGEEPEP 979

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                    +G     G      +G+    +                     +++ +TE+P
Sbjct: 980  MQPWFRGFKGEVTQQGPDRYKFSGLIKEVSD--------------------KEVEITELP 1019

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ ++++ ++      D +D +       VI++        +   L    
Sbjct: 1020 IRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKAAVSEGLEEKF 1079

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +  T+  ILK F A R +   RR ++ L++ +       
Sbjct: 1080 KLSRTIATSNLVAFDPEGRITKYATVSDILKEFYAVRLKYYERRKQHQLSELQKELDKFT 1139

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              A  V  + +   +I     P        +       + + +   +        + +  
Sbjct: 1140 NQARFVQMIIDGKLVISKKKKPVLIAELKEKGFKPFPKVSEAVKAGETEQVVEEDESSEE 1199

Query: 449  LSEVQT----RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS---RSRLLGII 501
             +          +L + +  LT    + +  ++     EI E + +      R  L   I
Sbjct: 1200 ANVEVASNAYDYLLGMAIWSLTQERVEKLLRQIGEKETEIDELIKLSKEDIWRRDLDDFI 1259

Query: 502  KQELLSVKDELDTPRR 517
             +    +++E    R+
Sbjct: 1260 NEWRFQLEEEQRRERK 1275


>gi|27542581|gb|AAO16891.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 66/84 (78%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD 
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGK 148
            AA RYTE RL K AH L+ DL K
Sbjct: 61  AAAMRYTEIRLAKIAHELMADLEK 84


>gi|296809619|ref|XP_002845148.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
 gi|238844631|gb|EEQ34293.1| DNA topoisomerase II [Arthroderma otae CBS 113480]
          Length = 1676

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/587 (17%), Positives = 192/587 (32%), Gaps = 69/587 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 802  RSIPSVIDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 857

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 858  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLLVN 917

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
              D     DG   EP       P +L+NG  GI  G +T+IP +N  +VV     ++   
Sbjct: 918  NTD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVANLKRLMAGE 972

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 973  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIT 1012

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +++ E+++  ++     D +D +       +I++        +   L 
Sbjct: 1013 ELPIRTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKALEEGLE 1072

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  RR ++LL++ + +  
Sbjct: 1073 EKFKLIKPIATSNMVAFDAEGRITRYETPEDILQAFYAVRIKLYERRKQHLLSQLQSQLD 1132

Query: 386  VLVGLAIAVANL---------DEVVRIIRFSPN------PETARRELMQRSWNASDIKDL 430
             L   A  V  +          +   +I+   +      P+ A         +    +D 
Sbjct: 1133 KLSNQARFVQMIIDGKLVISKKKKTILIQELKDKAFKPFPKVADTAKSDEVDDEEGEEDE 1192

Query: 431  IDLIDDSSYTIGSDGTMYLS-----------EVQTRAILELRLARLTGLGRDDIRNELNS 479
             +  +  +          LS           E   R I +  +     +           
Sbjct: 1193 EEEGNSDAVLSSDAYDYLLSMPLWSLTQERVEKLRRQIGDKEMEVDALIKLSKEDIWRKD 1252

Query: 480  LGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV 539
            L   I E    L         I      +  ++ T  R  + +       +D        
Sbjct: 1253 LDDFIAEWRFQLEDEENRRKKIAGRGRRLSAKVKTGSRVTVAKKRKANSGDDSDFDAPKG 1312

Query: 540  VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTH 586
               +      +  L  Y  + +        V   +D       V   
Sbjct: 1313 KKATVNRVQPKGGLLDYLGKPKPKAKIKSNVDGADDSDEFEVEVMPK 1359


>gi|302673662|ref|XP_003026517.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
 gi|300100200|gb|EFI91614.1| hypothetical protein SCHCODRAFT_17796 [Schizophyllum commune H4-8]
          Length = 1494

 Score =  183 bits (463), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/435 (19%), Positives = 170/435 (39%), Gaps = 35/435 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
               +  + I+D +    + +++   + R+IP + DGLKP  R+I++G  +  +   KK +
Sbjct: 739  NHDVDEIPISDFINKELILFSMADNI-RSIPSVADGLKPGQRKIIWGCFKRKL---KKEI 794

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
            K A++ G V     YH HG  ++   +  +AQD+  S  + L+   G +G+ D  G   A
Sbjct: 795  KVAQLVGYVSEHAAYH-HGEQSLTMTIVNLAQDYVGSNNINLLMPNGQYGTRDQGGKDHA 853

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            A RY    L      L +   +  +  +   D    EP       P VLVNG  GI  G 
Sbjct: 854  AARYIFTELSPLTRSLFNTADEPLLKQQKE-DNQPVEPEYYMPIIPMVLVNGADGIGTGW 912

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            +T+IP++N  ++V     ++D  +          + P FP      G   IK+   TG+ 
Sbjct: 913  STSIPSYNPTDIVANIRRLMDGEE----------QVPMFPWWRGFNG--EIKS---TGKN 957

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
               + G++       +  Q+ +TE+P          ++  ++  ++        +  D  
Sbjct: 958  KYDVTGIAR----KLNDTQVEITELPIHKWTQNFKAELETMMVSEKGEAPT-YTEHHDNT 1012

Query: 307  GYRVVIELKR---GASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                +I +       + +    + ++ TS  S  ++     +G   +  +   I++ F  
Sbjct: 1013 NVHFIITMSATELKKAEEQGFVEYFKLTSKISTANMIAFNFDGKITKYDSPEEIVEEFYP 1072

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
             R     +R  YL ++ + +   L   A  +  + +   I+      +            
Sbjct: 1073 QRLMYYQKRKDYLADELQVQLSRLNNQARFIQMIVDRQLIVSNRKKVDIVADLRKHDFRP 1132

Query: 424  ASDIKDLIDLIDDSS 438
               I    +  +D  
Sbjct: 1133 FPKIAKAKEAGEDEP 1147


>gi|60651668|gb|AAX32845.1| GyrA [Riemerella anatipestifer]
          Length = 80

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/80 (66%), Positives = 66/80 (82%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RR+L+GM  +GV  NKKY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++G
Sbjct: 1   RRVLYGMYGLGVFSNKKYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDG 60

Query: 114 QGNFGSVDGDPPAAERYTEC 133
           QGNFGS+DGDPPAA RYTE 
Sbjct: 61  QGNFGSMDGDPPAAMRYTEA 80


>gi|326536573|ref|YP_004301004.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
 gi|312262919|gb|ADQ53175.1| gp52 topoisomerase II medium subunit [Aeromonas phage 65]
          Length = 450

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 95/492 (19%), Positives = 179/492 (36%), Gaps = 63/492 (12%)

Query: 15  GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
            I   SI+  + N    +   VI+ RA+P L DGLKP  R +L+  ++        + K 
Sbjct: 2   KIVERSISSYIDNEAKEFTFYVIVNRALPSLIDGLKPSQRFVLYSAIK---TCQCGFKKN 58

Query: 75  ARISGEVMGKY-HPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
           A + G V+  Y +PHG  + +D  ++MA +++    ++EG+GNFGS      A  RY  C
Sbjct: 59  AYLCG-VLSDYGYPHGETSAFDVASKMATEYANNYPVLEGRGNFGSRANRDAAEPRYIFC 117

Query: 134 RLQKAAHFLLDD----LGKDTVDF-RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
           +L    H +  D    L  + V +  P +         L    P VL+NG  GIA   AT
Sbjct: 118 KLNSNFHDIFKDEDLLLDNEIVSYSIPKF--------YLPV-IPFVLLNGVKGIASAYAT 168

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
           NIP H++  V+D CV  +     D       ++ P F           I           
Sbjct: 169 NIPPHDIHSVIDECVKYVKTGKCDNPK----VKYPSF-----------IGKVNTPDNEQW 213

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
              GV  +      + ++ + +IP+  ++   +    +L+   +IV   ++  E D    
Sbjct: 214 TNEGVYEL----QGKTKLTIKDIPFSYDRIKYVSIRNKLIDSDQIVGYDEIEGEGD---- 265

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
                +      D     +     L+   +  +V +  Y       + +         E+
Sbjct: 266 -FTFRVTLKRDFDTSHENIMAKFDLRENINPTLVTIGPYSNMVTQEMDLRI--YKHSREL 322

Query: 369 VVRRTKYLLNKARDRA-HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +     Y L     R  +++  +   +  L   V  IR       AR   +  +     +
Sbjct: 323 IADFINYRLPIVDQRIQNMIDVIPKKIPELKARVEFIR------LARDGKVNFNQPKKAM 376

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              ++ + +               + +  ++ + +  +T      +  E      ++   
Sbjct: 377 IKQVEGLMEPELA-----------IFSDKVVGMPIFNMTDDEIARLNKEYEQAISDLDYW 425

Query: 488 LDILSSRSRLLG 499
            +  S +  L  
Sbjct: 426 KNTNSKKEYLKD 437


>gi|169606618|ref|XP_001796729.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
 gi|111065066|gb|EAT86186.1| hypothetical protein SNOG_06355 [Phaeosphaeria nodorum SN15]
          Length = 1705

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 95/502 (18%), Positives = 184/502 (36%), Gaps = 50/502 (9%)

Query: 18   SVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
             +S  D +   ++ ++   I    R+IP + DGLKP  R++L+   +  ++ +   VK  
Sbjct: 789  EISYDDFVNKEFILFS---IADNLRSIPSVMDGLKPGQRKVLYTCFRRNIKKD---VKVV 842

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
             ++G V G   Y  HG A++   +  +AQ++  S  +  +E  GNFGS    G   A+ R
Sbjct: 843  ELAGSVSGSTDY-AHGEASMQGTIVGLAQNFVGSNNINYLEPSGNFGSRLRGGADAASAR 901

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   RL   A  L        + +  + DG   EP +     P +LVNG  GI  G ++ 
Sbjct: 902  YIYTRLSPFARRLFHAHDDALLKYGES-DGHKIEPEMFIPVLPTILVNGSSGIGTGWSSE 960

Query: 190  IPTHNLGEVVDG-CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  N  +++D   + + D    +    M        P      G T    A    + + 
Sbjct: 961  IPNFNPMDIIDNIRIRLQDGASKEDMKPMT-------PWYKGFTGTTETLAA-DRFQFTG 1012

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQG 307
             IR             ++ VTE+P +       EK+ ++++ ++      D  D +    
Sbjct: 1013 TIR--------QTGENELEVTELPVRYWTQDFKEKLEDIIKAEKTPAFIKDYIDYNTPDR 1064

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
               +I+++     + +   L     L S  S + +     +        +L     F   
Sbjct: 1065 VHFIIKMEDKHMLNAVQKGLEETFKLYSKQSTSNLVAFDAQGRIHKYASVLDIMEEFYHV 1124

Query: 368  VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE----------L 417
                R +Y   + + +  V+      + N    +++I       + +++           
Sbjct: 1125 ----RLRYYEKRKQHQLEVMEKELSRMNNQARFIQMIIEGKLVVSKKKKAVLVAELRKLN 1180

Query: 418  MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
                  A D K   +  D        +  + +S      +L + +  LT    + +R ++
Sbjct: 1181 FTPFSKAEDAKKAGETEDVQEEDEDEETELEISASDYDYLLGMAIWSLTQERVEKLRKQI 1240

Query: 478  NSLGIEIKECLDILSSRSRLLG 499
                 E+     I  S   +  
Sbjct: 1241 GDKEEEVD--TLIKLSPKDIWN 1260


>gi|25006381|dbj|BAC24010.1| DNA topoisomerase II [Trichophyton rubrum]
          Length = 1097

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 677  RSIPSVVDGLKPGQRKVLYTMFKRNVRRD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 732

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 733  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 792

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 793  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 847

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 848  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIT 887

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       VI+++       +   L 
Sbjct: 888  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLE 947

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 948  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1007

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1008 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1049


>gi|302659966|ref|XP_003021668.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
 gi|291185576|gb|EFE41050.1| hypothetical protein TRV_04248 [Trichophyton verrucosum HKI 0517]
          Length = 1680

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 99/579 (17%), Positives = 193/579 (33%), Gaps = 68/579 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 861  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 920

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 921  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGE 975

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 976  ELVPMKPWFRGFKGEVSGSGDRYKFSGIIK--------------------QTADNEVEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1135

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI--------------KDLI 431
             L   A  V  + +   +I         +    +       +              ++  
Sbjct: 1136 KLSNQARFVQMIIDGELVISKKKKAVLIQELQEKGFKPFPKVVGTPEPGEAGDVEEEEDE 1195

Query: 432  DLIDDSSYTIGSDGTMYLS-----------EVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +    ++          LS           +   R I +  +     +           L
Sbjct: 1196 EEETTTAAVSSDAYDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLTKEDLWRKDL 1255

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
               I E    L         I      +  ++ T  R    +       +D         
Sbjct: 1256 DEFISEWRFQLEDEDNRRKKIASRGRRLSSKVKTGSRATAAKKRKAGSGDDSDFDVPKGK 1315

Query: 541  TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
              +      +  L  + ++ +     +  V   +D    
Sbjct: 1316 KATVNRIQPKGGLLDFLSKAKPKPKATSRVDGADDSDDF 1354


>gi|326482946|gb|EGE06956.1| DNA topoisomerase II [Trichophyton equinum CBS 127.97]
          Length = 1678

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 189/540 (35%), Gaps = 68/540 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 861  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 920

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 921  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 975

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 976  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1135

Query: 386  VLV------------GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
             L              L I+      +++ ++        +         A D+++  D 
Sbjct: 1136 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKVVGTPEPGEAGDVEEEEDE 1195

Query: 434  IDDSSYTIGSDGTMY--LS-----------EVQTRAILELRLARLTGLGRDDIRNELNSL 480
             ++++    S       LS           +   R I +  +     +           L
Sbjct: 1196 EEETTTAAASSDAYDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLSKEDLWRKDL 1255

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
               I E    L         I      +  ++ T  R    +       +D       V 
Sbjct: 1256 DEFISEWRFQLEDEENRRKKIASRGRRLSAKVKTGSRATAAKKRKAGSGDDSDFDVPKVK 1315


>gi|25006385|dbj|BAC24012.1| DNA topoisomerase II [Trichophyton violaceum]
          Length = 1094

 Score =  182 bits (461), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTMFKRNVRRD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 731

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 732  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 791

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 792  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 846

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 847  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIT 886

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       VI+++       +   L 
Sbjct: 887  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFVIQMEEKHMKKALEEGLE 946

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 947  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1006

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1007 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1048


>gi|313633447|gb|EFS00274.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL N1-067]
          Length = 404

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 101/464 (21%), Positives = 191/464 (41%), Gaps = 64/464 (13%)

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           SE Q  AI+ L+L RLT     ++++E  SL  +I     IL   + L+ ++K EL  +K
Sbjct: 1   SEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELVAVLKAELSEIK 60

Query: 510 DELDTPRRTRIV--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS 567
            +  TPRRT +      + ++ E  +  ED++V+V+  GYVKR     Y A         
Sbjct: 61  KKYKTPRRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNG-----K 115

Query: 568 GVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQG 627
            + M++ D    +  +++  ++L F+S G      V  LP    +  G  + ++ S    
Sbjct: 116 ELAMKEADHAIFIKKMNSLETLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSA 175

Query: 628 ERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MKLDSRDEILS 686
                     + ++       +F TK+G  +++ ++++     S  +  +KL   DE+LS
Sbjct: 176 GEEIR--SVIDIQTFTEEKRFLFVTKNGMTKQSLITNYKPQRYSKSMMGIKLKDDDELLS 233

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           V       DI L TK G  +R+PI+ I     R + GV+ I+L + D VI   ++  +D 
Sbjct: 234 VHLIDGTEDIFLATKNGYGLRYPIAEIPESGARTA-GVKAINLKQDDTVIGGVVLTQSDN 292

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
            +                                                   IL  +++
Sbjct: 293 RH---------------------------------------------------ILLATQR 301

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+  + +F   +R+ +G+      K N     + +   N+ D + + +    ++ V 
Sbjct: 302 GSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLANNKDHLFIETKTEQIVEVD 360

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           V  +R+  R + G  +     +   +S+  +   EI D  +S +
Sbjct: 361 VANLRVTDRYSNGSFVLDETMEGEPISI-WLDIPEIKDTTDSKD 403


>gi|157953897|ref|YP_001498788.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
 gi|156068545|gb|ABU44252.1| hypothetical protein AR158_C707L [Paramecium bursaria Chlorella virus
            AR158]
          Length = 1062

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 101/474 (21%), Positives = 181/474 (38%), Gaps = 60/474 (12%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + +     V + D +    + ++    L R+IP + DG KP  R++++   +  + 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVIYSAFKRNLT 677

Query: 67   WNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV 120
             +   VK A+ SG V     YH HG A++   +  +AQD+    ++  LL EGQ  FGS 
Sbjct: 678  TD---VKVAQFSGYVAEHSAYH-HGEASLQGTIVNLAQDYVGSNNINWLLPEGQ--FGSR 731

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      +  D   + + +  + DG   EP       P++LVNG
Sbjct: 732  LQGGKDHASARYIFTKLNPQTRQVFVDTDDNLLKYLYD-DGDKIEPEYYVPVIPSILVNG 790

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGI 237
              GI  G +TNIP++N  ++VD    +I   D+          +G    T   +    G+
Sbjct: 791  SSGIGTGWSTNIPSYNPKDIVDNVKRLIAGEDLVEMKPWYRGFKGKIEETSPDVYVTKGL 850

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                                    + + IVV+E+P         E +  L+ +K I D  
Sbjct: 851  YM---------------------PNGKTIVVSELPIGKWTQDYKEHLDGLLEKKIISDFR 889

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLI 355
            +   ++D     V+ E+    + +V + +L          S NM A + Y    +  T +
Sbjct: 890  EKHTDTD-----VLFEIDFIGNPNVDILKLETTIR-----STNMHAFDPYGKIKKYDTPL 939

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             I++ +   R+++ V+R  YLL            L           R I    + E    
Sbjct: 940  DIIREWFGVRKDLYVKRKAYLL----------EDLTHRTNIAQNKYRFITMVNDGEIIIN 989

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            +  +   +A   K     +DD    + +     L+  +   +    +     L 
Sbjct: 990  KRNESDISAELEKLKFYKVDDKYDYLLNMRISSLTLERAEELKRESVKLEKELD 1043


>gi|146306|gb|AAA23948.1| gyrase A [Escherichia coli]
          Length = 88

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 49/82 (59%), Positives = 69/82 (84%)

Query: 15 GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
           IT V+I +E+++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G +WNK Y K 
Sbjct: 7  EITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKS 66

Query: 75 ARISGEVMGKYHPHGNAAIYDA 96
          AR+ G+V+GKYHPHG++A+YD 
Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDT 88


>gi|260807655|ref|XP_002598624.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
 gi|229283897|gb|EEN54636.1| hypothetical protein BRAFLDRAFT_67020 [Branchiostoma floridae]
          Length = 1181

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 35/343 (10%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DGLKP  R++LF  ++     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 172 ERSIPSLVDGLKPGQRKVLFTCLK---RNDKREVKVAQLAGSVAEMSAYH-HGETSLMGT 227

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L +   +  ++
Sbjct: 228 IINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIFTMLSTLARKLFNTFDEPMLN 287

Query: 153 FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           ++  YD + + EP       P VLVNG  GI  G +T +P +++ E+++  + +ID  D 
Sbjct: 288 YQ--YDDNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPNYDVREIINNMLRMIDGKD- 344

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      P  P+     G                 R V++ E    D   I +TE+
Sbjct: 345 ---------PLPMNPSYKNFKGDIEELEEN---------RFVANGEVAILDNNTIEITEL 386

Query: 272 PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
           P +       E + E++    EK    I D ++       R V+ +            L+
Sbjct: 387 PIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTVRFVVSMTEEQLMKAEAAGLH 446

Query: 329 RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR 371
           +   LQS  +   + L  +     T   + +    F +  +  
Sbjct: 447 KVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFFDLRLQW 489


>gi|118139708|gb|ABK63300.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 50/88 (56%), Positives = 64/88 (72%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
            +     Y K ARI G+V+GKYHPHG+ +++DAL RMAQ +S+R  L++GQGNFGSVDGD
Sbjct: 2   KITTKNAYKKSARIVGDVIGKYHPHGDTSVHDALVRMAQSFSMRAPLVDGQGNFGSVDGD 61

Query: 124 PPAAERYTECRLQKAAHFLLDDLGKDTV 151
             AA RYTE R+ + A  +L DL KDTV
Sbjct: 62  SAAAMRYTEARMTRIAEEVLRDLDKDTV 89


>gi|294657090|ref|XP_459406.2| DEHA2E01738p [Debaryomyces hansenii CBS767]
 gi|199432439|emb|CAG87617.2| DEHA2E01738p [Debaryomyces hansenii]
          Length = 1411

 Score =  181 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/420 (19%), Positives = 162/420 (38%), Gaps = 39/420 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +  +  + I+D +    + +++   + R+IP + DG KP  R++L+G  +  + 
Sbjct: 702  EPGTHLDPDLEEIPISDFINKELILFSMADNV-RSIPSVLDGFKPGQRKVLYGCFKRNL- 759

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K  +K  +++G V     YH HG  ++   +  +AQD+  S  L +++  G+FGS   
Sbjct: 760  --KSEIKVNQLAGYVSENTGYH-HGEQSLVQTIIGLAQDFIGSNNLNILKPNGSFGSRAA 816

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGG 179
             G   +A RY    + +    + + L      +  + D    EP   L    P +LVNG 
Sbjct: 817  GGKDFSAPRYIFTEINEITRKIFNPLDNALYKYVQD-DEQTVEPEWYLPV-LPMLLVNGS 874

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +TN+P  N  ++V+    +++  +++  +                 G  G   
Sbjct: 875  EGIGTGWSTNVPPFNPTDIVNNIKKLMNGEEMNEMSPWY-------------RGWEG--E 919

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK-IAELVREKRIVDIAD 298
              A G+    + G         D  ++ +TEIP +     M E  +  L  EK    I D
Sbjct: 920  IVANGKDRFRVIGRIE----QTDETEVEITEIPVKTWTNNMKEFLLNGLGTEKVKPWIKD 975

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
            + +E      R V++L     A  +   L    +L S  S+  +       +       L
Sbjct: 976  M-EEQHGMNIRFVVKLSADEMAKSLKVGLLERFNLISSVSLTNMVAFDPMGKIKKYESPL 1034

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            +    F    +    +   +   +  H L  L    +     +++I       + ++  +
Sbjct: 1035 EIMRDFYYVRLEYYQRRKDHITDEMQHQLTKL----SEQARFIKLIIDKELSISNKKRSV 1090


>gi|302500519|ref|XP_003012253.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
 gi|291175810|gb|EFE31613.1| hypothetical protein ARB_01513 [Arthroderma benhamiae CBS 112371]
          Length = 1680

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 99/579 (17%), Positives = 193/579 (33%), Gaps = 68/579 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 861  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLLVN 920

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 921  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGE 975

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 976  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 1016 ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1135

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI--------------KDLI 431
             L   A  V  + +   +I         +    +       +              ++  
Sbjct: 1136 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKVVGTPEPGEAGDVEEEEDE 1195

Query: 432  DLIDDSSYTIGSDGTMYLS-----------EVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +    ++          LS           +   R I +  +     +           L
Sbjct: 1196 EEETTTAAVSSDAYDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLTKEDLWRKDL 1255

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
               I E    L         I      +  ++ T  R    +       +D         
Sbjct: 1256 DEFISEWRFQLEDEDNRRKKIASRGRRLSSKVKTGSRATAAKKRKAGSGDDSDFDVPKGK 1315

Query: 541  TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
              +      +  L  + ++ +     +  V   +D    
Sbjct: 1316 KATVNRVQPKGGLLDFLSKAKPKPKATSRVDGADDSDDF 1354


>gi|215480313|gb|ACJ67501.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 260

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 124/278 (44%), Positives = 178/278 (64%), Gaps = 26/278 (9%)

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
           +GRGSI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDE
Sbjct: 1   SGRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDE 60

Query: 303 SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
           SDR G R+VIE++R A+A+VILN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++
Sbjct: 61  SDRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYL 120

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             ++ V+ RRT Y L KA  RAH+L GL +A+ +LD V+ +IR S   E AR  L+++  
Sbjct: 121 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ-- 178

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGI 482
                                     L+E Q +AIL++RL RLTGL R+ I  E  SL  
Sbjct: 179 ------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVK 214

Query: 483 EIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
            I E  DIL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 LIAELKDILANEYKVLEIIREELTEIKERFNDERRTEI 252


>gi|308510362|ref|XP_003117364.1| CRE-TOP-2 protein [Caenorhabditis remanei]
 gi|308242278|gb|EFO86230.1| CRE-TOP-2 protein [Caenorhabditis remanei]
          Length = 1547

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 98/433 (22%), Positives = 168/433 (38%), Gaps = 63/433 (14%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   
Sbjct: 730  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAEISAYH-HGEQSLMGT 785

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      +      + + 
Sbjct: 786  IVNLAQDFVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSIFPAHDDNVLR 845

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   Y+ + + EP   C   P VLVNG  GI  G +TNIP +N  ++V     +I     
Sbjct: 846  FL--YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRDIVKNIKRLIAGESQ 903

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIV 267
                                     I   Y   RG+I+     R   + E  + D   I 
Sbjct: 904  -----------------------KAIAPWYKNFRGNIIQIDSSRYACYGEVATIDDNTIE 940

Query: 268  VTEIPYQVNKAAMLEKIAELV-----REKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            +TE+P +       EK+ E +     ++K+   + D ++       + V++L  G   ++
Sbjct: 941  ITELPVKQWTQDYKEKVLEALLDSSDKDKKAPLVLDYKEYHTDTTVKFVVKLAPGKLREL 1000

Query: 323  IL-NQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLN 378
                 L++   LQS+ +   + L           +   I + F   R+E  ++R  YLL 
Sbjct: 1001 ERGEDLHQVFKLQSVINTTCMVLFDAAGCLRTYSSPEEITQEFYDCRKEKYIQRKDYLLG 1060

Query: 379  KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
              + ++  L            +V  I            +M+    A  ++ LI +  D  
Sbjct: 1061 VLQAQSQRL------TNQARFIVAKINN--------EIVMENKKKAVIVETLIKMKFDPD 1106

Query: 439  YTIGSDGTMYLSE 451
                      L E
Sbjct: 1107 PVKKWKEEQKLKE 1119


>gi|27542589|gb|AAO16895.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 83

 Score =  181 bits (460), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  
Sbjct: 1   DWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSA 60

Query: 126 AAERYTECRLQKAAHFLLDDLGK 148
           AA RYTE RL K AH L+ DL K
Sbjct: 61  AAMRYTEIRLAKIAHELMADLEK 83


>gi|38453801|dbj|BAD02201.1| DNA topoisomerase II [Arthroderma incurvatum]
          Length = 1086

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/441 (18%), Positives = 163/441 (36%), Gaps = 47/441 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 727

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 728  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 787

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 788  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMVGD 842

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ ++
Sbjct: 843  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIS 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ ++++ +++     D +D +       +I++        +   L 
Sbjct: 883  ELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKAVEEGLE 942

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF   R ++  +R ++LL++ + +  
Sbjct: 943  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYTVRIKLYEKRKQHLLSELQTQLD 1002

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----LIDDSSYTI 441
             L   A  V  + +   +I              +       + D  +       D     
Sbjct: 1003 KLSNQARFVQMIIDGKLVISKKKKAILIEELQEKGFKPFPKVIDTREPGEAGDVDDEEDE 1062

Query: 442  GSDGTMYLSEVQTRAILELRL 462
                +  L+      +L + +
Sbjct: 1063 EEAASAALTSDAYDYLLSMPI 1083


>gi|27542601|gb|AAO16901.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/84 (60%), Positives = 65/84 (77%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
            +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD 
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDS 60

Query: 125 PAAERYTECRLQKAAHFLLDDLGK 148
            AA RYTE RL K AH L+ DL K
Sbjct: 61  AAAMRYTEIRLAKIAHELMADLEK 84


>gi|25006391|dbj|BAC24015.1| DNA topoisomerase II [Epidermophyton floccosum]
          Length = 1091

 Score =  181 bits (459), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 158/407 (38%), Gaps = 43/407 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 790  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDSEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + R  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTRLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
             L   A  V  + +   +I         +    +       + D  +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKALLIQELQEKGFKPFPKVVDNRE 1051


>gi|27542591|gb|AAO16896.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 82

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 52/82 (63%), Positives = 64/82 (78%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
           WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  A
Sbjct: 1   WNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAA 60

Query: 127 AERYTECRLQKAAHFLLDDLGK 148
           A RYTE RL K AH L+ DL K
Sbjct: 61  AMRYTEIRLAKIAHELMADLEK 82


>gi|212531355|ref|XP_002145834.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
 gi|210071198|gb|EEA25287.1| DNA topoisomerase II [Penicillium marneffei ATCC 18224]
          Length = 1696

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 89/496 (17%), Positives = 187/496 (37%), Gaps = 43/496 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  ++ +   +K   ++G V  M  Y  HG  ++   +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTCFKRNLKKD---MKVVELAGHVSGMTAYQ-HGETSLQQTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  + +   +  + +
Sbjct: 861  VGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFNQQDEPLLTY 920

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +++IP +N  ++V     ++D  + + 
Sbjct: 921  NED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEP 979

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G   P G      +G                         + +++ +TE+P
Sbjct: 980  MQPWFRGFNGEVTPQGPDRYKFSGRI--------------------HELNDKEVEITELP 1019

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ ++++ ++      D +D +       VI++        +   L    
Sbjct: 1020 IRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKAAVDEGLEEKF 1079

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +  T+  ILK F A R +   RR ++ L++ + +     
Sbjct: 1080 KLSRTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQHQLSELQKQLDKFT 1139

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----LIDDSSYTIGSD 444
              A  +  + +   ++              +       + + +                +
Sbjct: 1140 NQARFIQMIIDGKLVVSKKKKATLITELKEKGFKPFPKVAEAVKAGETEQVVEEEESSEE 1199

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR---SRLLGII 501
                ++      +L + +  LT    + +  ++    +EI E + +         L G I
Sbjct: 1200 ANTEMASNAYDYLLGMAIWSLTQERVEKLLRQIGDKEVEIDELIKLSKEEIWRRDLDGFI 1259

Query: 502  KQELLSVKDELDTPRR 517
             +    +++E    R+
Sbjct: 1260 NEWRFQLEEEHRRERK 1275


>gi|730968|sp|P41001|TOP2_PLAFK RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1398

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 88/541 (16%), Positives = 180/541 (33%), Gaps = 76/541 (14%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +       K A++ G +     YH HG +++  
Sbjct: 735  TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE---CKVAQLVGYIAEHSAYHHHGESSLQQ 791

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 792  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPIL 851

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  +++D     I+    
Sbjct: 852  KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYIN---- 906

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G +  E        D + + 
Sbjct: 907  ---------KEPLIP----------MVPWYKDFKGRIESNGKTGYETIGIINKIDNDTLE 947

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +TE+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 948  ITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLQKAEEEGL 1007

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +   L+S  +   + L     +       L     F      +R K   N+       L
Sbjct: 1008 EKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKEFCY----QRLKAYENRKSYLISKL 1063

Query: 388  VGLAIAVANLDEVVRIIRFSP--------------------NP-----ETARRELMQRSW 422
                  ++N  + +  I  +                     +P     +  + E+ ++  
Sbjct: 1064 EKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQEL 1123

Query: 423  ------NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                     + + +  +       + S     L+  +   +L     +   L        
Sbjct: 1124 LDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITV 1183

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
                  +I++  + +         ++       ++    R+          + +     E
Sbjct: 1184 ETMWLKDIEKVEEAIE----FQRNVELSNREESNKFKVARKQGPSSMKKKKKKKKLSSDE 1239

Query: 537  D 537
            +
Sbjct: 1240 E 1240


>gi|326473740|gb|EGD97749.1| DNA topoisomerase II [Trichophyton tonsurans CBS 112818]
          Length = 1678

 Score =  181 bits (458), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 100/540 (18%), Positives = 188/540 (34%), Gaps = 68/540 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 805  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 860

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 861  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 920

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 921  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 975

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 976  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 1015

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P         +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 1016 ELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 1075

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 1076 EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1135

Query: 386  VLV------------GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
             L              L I+      +++ ++        +         A D+++  D 
Sbjct: 1136 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKVVGTPEPGEAGDVEEEEDE 1195

Query: 434  IDDSSYTIGSDGTMY--LS-----------EVQTRAILELRLARLTGLGRDDIRNELNSL 480
             ++++    S       LS           +   R I +  +     +           L
Sbjct: 1196 EEETTTAAASSDAYDYLLSMPLWSLTQERVDKLRRQIGDKEMEVDALIKLSKEDLWRKDL 1255

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
               I E    L         I      +  ++ T  R    +       +D       V 
Sbjct: 1256 DEFISEWRFQLEDEENRRKKIASRGRRLSAKVKTGSRATAAKKRKAGSGDDSDFDVPKVK 1315


>gi|27542587|gb|AAO16894.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 84

 Score =  181 bits (458), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 50/82 (60%), Positives = 64/82 (78%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAHFLLD 144
           D  AA RYTE RL K AH L+ 
Sbjct: 63  DSAAAMRYTEIRLAKIAHELMA 84


>gi|25006389|dbj|BAC24014.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1091

 Score =  180 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 89/446 (19%), Positives = 169/446 (37%), Gaps = 47/446 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V+ +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 675  RSIPSVVDGLKPGQRKVLYTMFKRNVKKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 730

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 731  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLAN 790

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 791  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGD 845

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ ++
Sbjct: 846  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIS 885

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 886  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 945

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R ++LL++ + +  
Sbjct: 946  EKFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLD 1005

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----LIDDSSYTI 441
             L   A  V  + +   +I         +    +       + D  +       +     
Sbjct: 1006 KLSNQARFVQMIIDGKLVISKKKKALLIQELQEKGFKPFPKVVDTPEPGEAGDVEDEEDE 1065

Query: 442  GSDGTMYLSEVQTRAILELRLARLTG 467
                T  LS      +L + L  LT 
Sbjct: 1066 EETATAALSSDAYDYLLSMPLWSLTH 1091


>gi|302895481|ref|XP_003046621.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
 gi|256727548|gb|EEU40908.1| hypothetical protein NECHADRAFT_33819 [Nectria haematococca mpVI
            77-13-4]
          Length = 1677

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 150/399 (37%), Gaps = 34/399 (8%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             S+S +D +    + +++   + R+IP + DG KP  R++L+   +  +  +K   K   
Sbjct: 779  KSISYSDFINRELILFSMADNM-RSIPSVLDGFKPGQRKVLYACFKRNLVKDK---KVVE 834

Query: 77   ISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERY 130
            +SG V  +  YH HG A++   +  +AQ++  S  +  +E  GNFGS    G   A+ RY
Sbjct: 835  LSGYVSEQTAYH-HGEASLQQTIIGLAQNFVGSNNINCLEPSGNFGSRLAGGSDAASPRY 893

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNY-----DGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            T  RL   A  +   + +      PN      DG   EPV      P VLVNG  GI  G
Sbjct: 894  TFTRLSPFARKIFSPMDE------PNLQHQHEDGKKIEPVAYAPIIPMVLVNGADGIGTG 947

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATG 244
             +T+IP ++  ++V      +   D      +      P F       G  G     A G
Sbjct: 948  WSTSIPNYHPEDIVRNLKRRMGRLDEKDGEELPFETMMPWF------RGWKGQPE--AAG 999

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIADLRDES 303
                   G++   +   +  +I ++E+P +V       ++ +++        I D ++ +
Sbjct: 1000 PDRYKFNGIAQQNE--RNPNEITISELPIRVWTDDFKARLEKIISGNDGPAWIKDYKEFN 1057

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
            D       + +    +  V+   +     L    + + +     + +      +      
Sbjct: 1058 DHSVVHFEVMMDEKHTEKVLEEGILERFKLLKQVATSNLVAFDSRGQIRKYEKVEDILEE 1117

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            +        T+               L      + E++ 
Sbjct: 1118 YYHYRFDMYTERKKYWLGVYHADYRKLKNQARFIKEIID 1156


>gi|34604736|gb|AAQ79819.1| GyrA [Escherichia coli]
          Length = 79

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 63/79 (79%)

Query: 48  GLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           GLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y  + RMAQ +SLR
Sbjct: 1   GLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLR 60

Query: 108 LLLIEGQGNFGSVDGDPPA 126
            +L++GQGNFGS+DGD  A
Sbjct: 61  YMLVDGQGNFGSIDGDSAA 79


>gi|114145437|ref|NP_001041456.1| transcription factor [Ciona intestinalis]
 gi|93003262|tpd|FAA00214.1| TPA: transcription factor protein [Ciona intestinalis]
          Length = 1538

 Score =  180 bits (457), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 104/497 (20%), Positives = 199/497 (40%), Gaps = 44/497 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R++P L DGLKP  R++L+  ++     +K+ VK A+++G V  +  YH HG  ++  
Sbjct: 703  LERSVPSLCDGLKPGQRKVLYTCLR---RNDKREVKVAQLAGSVAELSAYH-HGEQSLLG 758

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  L L++  G FG+    G   A+ RY    L      L   + ++ +
Sbjct: 759  TIINMAQNYVGSNNLNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLTRLLFPQVDENLL 818

Query: 152  DFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
             ++  YD + + EP   C   P VLVNG  GI  G +T +P H++ EVV     +I+  +
Sbjct: 819  TWQ--YDDNQKVEPSWYCPIIPTVLVNGTEGIGTGWSTRVPNHDIREVVKNIKRLINGEE 876

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                        P  P+     G      A          R V   E    D + + +TE
Sbjct: 877  ----------PVPMLPSYKNFRGTIEEVEAN---------RYVVSGEAALIDDQTVEITE 917

Query: 271  IPYQVNKAAMLEKIAE-LV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +    A  E + E LV   +K    I + ++ +     R ++++       +  + L
Sbjct: 918  LPIKSWTQAYKESVLEPLVAGTDKAPQQILEYKEYNTDITVRFLVKMGADKLKTMERSGL 977

Query: 328  YRYTSLQSLFSVNMV-ALNGYKPERFTLIGILKAFVAFREEVVV-RRTKYLLNKARDRAH 385
            +++ SLQ+  S N    L             ++  + F +        +         A 
Sbjct: 978  HKFLSLQNSLSCNNTLVLFDEFGRLRKFNTTVEILLEFYKIRSKLYEKRKDFLTGLLTAE 1037

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELM-QRSWNASDIKDLIDLIDDSSYTIGSD 444
                   A   ++++   I     P+    +++   ++++  +K   + I        SD
Sbjct: 1038 AAKLTNQARFIVEKIEGKISIFNKPKKVLIKMLVDNNYDSDPVKAWKNSIAKKVEERASD 1097

Query: 445  GTMYLSEV----QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
                  E         IL + L  L+   +D++  + ++   E++E      + +RL   
Sbjct: 1098 EEEEEVEDNKGPDFNYILSMPLWSLSKERKDELLKQRDAKCGELEELK--KKTPTRLWLD 1155

Query: 501  IKQELLSVKDELDTPRR 517
               + +   D+++   R
Sbjct: 1156 DLDKFMEELDKVEQKER 1172


>gi|297831176|ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297329310|gb|EFH59729.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1432

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 146/398 (36%), Gaps = 34/398 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +  V      +K A++ G V  M  YH HG  ++  
Sbjct: 698  LQRSIPSMVDGLKPGQRKILFTAFKKIVVKE---MKVAQLVGYVSSMSAYH-HGEQSLAS 753

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            A+  MAQD+  S  + L++  G FG+    G   A+ RY    L      L        +
Sbjct: 754  AIIGMAQDYVGSNNINLLQPNGQFGTRNSGGKDAASARYIFTILSPVTRILFPKDDHILL 813

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            D+  N DG   EP   +    P VLVNG  GI  G +T IP +N  E+V      ++   
Sbjct: 814  DY-LNEDGQSIEPTWYMPI-IPTVLVNGSEGIGTGWSTFIPNYNPREIVANVRCRLNGES 871

Query: 211  IDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            +          +G    T +              G  +  I G+        D   I +T
Sbjct: 872  MVPMDPWYRGFKGTIEKTAS------------KEGGCTYTITGLYE----EVDDTTIRIT 915

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            E+P +       + +  L  +       D++  +D +     + L              +
Sbjct: 916  ELPIRRWNDDYKQFLQSLKTDNGAPFFQDVKAYNDDKSVDFDLILSEENMLAARQEGFLK 975

Query: 330  YTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               L +  + + + L   K    +  T   IL+ F   R E   +R + +L         
Sbjct: 976  KFKLTTTIATSNMHLFDRKGVIKKYATPEQILEEFFELRLEYYEKRKETMLKNLEIELLK 1035

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
            L      +  +     II  +        +L QR +  
Sbjct: 1036 LENKVRFILGVLSG-EIIVNNRKKADIVEDLRQRGFTP 1072


>gi|38453823|dbj|BAD02212.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|38453821|dbj|BAD02211.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|312183507|gb|ADQ42323.1| topoisomerase IV subunit A [Actinobaculum schaalii]
          Length = 93

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 69/94 (73%), Gaps = 1/94 (1%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEG 113
           RRILF M QMG+  ++ +VK +R+ G+VMG+ HPHG+ AIYDA+ R+AQ +++RL L++G
Sbjct: 1   RRILFQMGQMGLRPDRAHVKSSRVVGDVMGRLHPHGDTAIYDAMVRLAQPFTMRLPLVDG 60

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLG 147
            GNFGS+D D PAA RYTE RL   A  ++  L 
Sbjct: 61  HGNFGSLD-DGPAASRYTEARLAAPAMAMISSLD 93


>gi|38453819|dbj|BAD02210.1| DNA topoisomerase II [Trichophyton verrucosum]
          Length = 1089

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVSGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGELVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|38453799|dbj|BAD02200.1| DNA topoisomerase II [Arthroderma obtusum]
          Length = 1086

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 89/441 (20%), Positives = 164/441 (37%), Gaps = 47/441 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 727

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 728  VGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQSDEPLLVN 787

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 788  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGE 842

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 843  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++  ++     D +D +       +I+++       +   L 
Sbjct: 883  ELPIRTWTQDFKDKLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 942

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R ++LL++ +    
Sbjct: 943  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSELQTHLD 1002

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L   A  V  + +   +I         +    +       + D  +  D        D 
Sbjct: 1003 KLSNQARFVQMIIDGKLVISKKKKALLIQELQEKGFKPFPRVADTPEPGDAGDVEEEEDE 1062

Query: 446  TMY----LSEVQTRAILELRL 462
                   LS      +L + L
Sbjct: 1063 EETTTAALSSDAYDYLLSMPL 1083


>gi|313192266|emb|CBY05941.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 101

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/80 (65%), Positives = 63/80 (78%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH
Sbjct: 20  VIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAH 79

Query: 141 FLLDDLGKDTVDFRPNYDGS 160
            L+ DL K+TVDF  NYDG 
Sbjct: 80  ELMADLEKETVDFVDNYDGK 99


>gi|38453803|dbj|BAD02202.1| DNA topoisomerase II [Arthroderma gypseum]
          Length = 1086

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/441 (19%), Positives = 167/441 (37%), Gaps = 47/441 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V+ +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNVKKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 727

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 728  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 787

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 788  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGD 842

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ ++
Sbjct: 843  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIS 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 883  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 942

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R ++LL++ + +  
Sbjct: 943  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLD 1002

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----LIDDSSYTI 441
             L   A  V  + +   +I         +    +       + D  +       +     
Sbjct: 1003 KLSNQARFVQMIIDGKLVISKKKKALLIQELQEKGFKPFPKVVDTPEPGEAGDVEDEEDE 1062

Query: 442  GSDGTMYLSEVQTRAILELRL 462
                T  LS      +L + L
Sbjct: 1063 EETATAALSSDAYDYLLSMPL 1083


>gi|322510575|gb|ADX05889.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
            phycodnavirus 1]
          Length = 1083

 Score =  180 bits (456), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/451 (20%), Positives = 177/451 (39%), Gaps = 42/451 (9%)

Query: 4    HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
               + D   +     +S+ D +    + ++      R+IP+L DGLK   R+IL+   + 
Sbjct: 629  STYNRDGVLDTNQLQISVCDFVDKEMIHFSKYD-CDRSIPNLMDGLKVSQRKILYSAFKK 687

Query: 64   GVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
             +      +K A+ SG V     YH HG +++  A+  MAQ +  S  + ++   G FG+
Sbjct: 688  NLVSE---IKVAQFSGYVSEHSGYH-HGESSLNGAIVNMAQTFVGSNNINVLMPNGQFGT 743

Query: 120  V--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
                G   A+ERY   +L K    +        +++  N DG+  EPV      P +LVN
Sbjct: 744  RLQGGKDSASERYIFTQLNKITRMIFKKEDDVILNY-LNDDGTPVEPVFYAPILPMILVN 802

Query: 178  GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
            G  GI  G +T+IP  N  E++D  +  +++P+  +   +     P +      + +   
Sbjct: 803  GTKGIGTGFSTDIPCFNPKELIDYILKKLEDPNH-IRDFI-----PYYKHFTGTIEKEDS 856

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
            +     G+ SI               + I++TE+P  V     +  + + + + ++ D +
Sbjct: 857  RRFITKGKYSIQ-------------NKTIIITELPIGVWNEDYITHLEKCIVDNKLKDYS 903

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTL--- 354
            D   +S       VI  K     ++    + +   L +  S+N + L     +       
Sbjct: 904  DQSTDS-------VIYFKLTLKENMDEEAILKTFKLTTTLSINNMNLFDPFDKLVHYNEV 956

Query: 355  IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA-IAVANLDEVVRIIRFSPNPETA 413
              I   F+  R     +R  YL+    +  ++L          L++ + + + S +    
Sbjct: 957  HEICDDFIQVRLGYYEKRKLYLVKMLSEEMNILSNKCKYINELLNDTLDLRKKSNSQMVE 1016

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              +  +          LI +  DS      D
Sbjct: 1017 LLQQKKYDTLNDSYHYLIKMPMDSVCKENVD 1047


>gi|321251923|ref|XP_003192225.1| DNA topoisomerase II [Cryptococcus gattii WM276]
 gi|317458693|gb|ADV20438.1| DNA topoisomerase II, putative [Cryptococcus gattii WM276]
          Length = 1377

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/498 (19%), Positives = 184/498 (36%), Gaps = 48/498 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I S+ I+D +    + +++   + R+IP + DGLKP  R++LFG  +  +      +
Sbjct: 758  DHDIQSLPISDFVNKELILFSMADNI-RSIPSVADGLKPGQRKVLFGCFKRNLTKE---I 813

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V  K  YH HG A++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 814  KVAQLAGYVSEKTAYH-HGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLAGGKDAA 872

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIA 183
            + RY    L +    +         D   NY   DG   EP       P VL+NG  GI 
Sbjct: 873  SARYIFTNLPRMTRAIFHPAD----DGLLNYLIEDGMSIEPDYFMPTVPMVLINGADGIG 928

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +T IP +N  ++V+    ++   + +                    G  G       
Sbjct: 929  TGWSTAIPNYNPVDIVENLRRMMRGEEPEEMTPWF-------------RGFKGSIERIDQ 975

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRD 301
                  + G         +   + +TE+P +       E + E+    +K    I D  +
Sbjct: 976  --DKYKVSGKIE----KINDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIKDYEE 1029

Query: 302  ESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
                      + +     AD         ++ T+     ++    LNG   +  +   IL
Sbjct: 1030 HHTDTTVHFRVHMTEKNLADAEKEGFDKRFKLTTSLGTGNMVCFDLNGKIKKYASPEEIL 1089

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHV--LVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            + F   R E    R ++L ++   +          + +    E+V   +  P+     R 
Sbjct: 1090 EEFFHKRLEFYGHRKQHLADELNRQFERLSNQARFVHMIITKELVVSGKRRPDIVAELRS 1149

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            L  R +   +        + +    G +G           +L + +  LT    + +  E
Sbjct: 1150 LKFRPFPKKERAKEEGGNEAAEEEEGDEGQAS----DYDYLLGMAIWSLTSEKVEKLLTE 1205

Query: 477  LNSLGIEIKECLDILSSR 494
             ++   E+ E L +  + 
Sbjct: 1206 RDAKEQELIELLKLSPND 1223


>gi|242016991|ref|XP_002428978.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
 gi|212513807|gb|EEB16240.1| DNA topoisomerase 2-beta, putative [Pediculus humanus corporis]
          Length = 1223

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/423 (21%), Positives = 158/423 (37%), Gaps = 43/423 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF  ++     +KK +K A+++G V     YH HG A++   
Sbjct: 716  ERSIPSMVDGLKPGQRKVLFTCLK---RNDKKEIKVAQLAGSVAEHSAYH-HGEASLMGT 771

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L+   G FG+    G   A+ RY    L      +        + 
Sbjct: 772  IINLAQNYVGSNNLNLLLPIGQFGTRLQGGKDAASPRYIFTLLNPLTRLIFHVHDDPLLK 831

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  N D + + EP       P VLVNG  GI  G  T IP HN  E+V     ++D  + 
Sbjct: 832  Y--NKDDNQKIEPEWYIPIIPMVLVNGADGIGTGWMTKIPNHNPREIVQNIKRMLDGDE- 888

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G  G   +Y  G    ++ G    E +     Q+ +TE+
Sbjct: 889  ---------PLPMKPWYK---GFKGDIESY--GDSRYLVSG----EISIISNNQLEITEL 930

Query: 272  PYQV----NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P        K  +LE +   V  K    I D ++ +     R VI+++           L
Sbjct: 931  PVGTWTQAYKENVLEPLLHGVENKVPPLIQDYKEYNTDTTVRFVIQMEPSKLQKFEEEGL 990

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            ++   LQS  S+N +              +      F +  +       L   + ++++ 
Sbjct: 991  HKVFKLQSTISINSMCTFDSNGVLKRSEDVTVILKEFYDLRM-------LFYVKRKSYLE 1043

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
              L      L    R I    + +       ++      +K   +     ++    D   
Sbjct: 1044 GMLQSEADKLSNQARFIIEKCDGKLVIENKKKKVMIDELVKLKYESDPVKTWKTNIDKEA 1103

Query: 448  YLS 450
             L+
Sbjct: 1104 ALT 1106


>gi|38453825|dbj|BAD02213.1| DNA topoisomerase II [Arthroderma benhamiae]
          Length = 1089

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMVGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|156101890|ref|XP_001616638.1| DNA topoisomerase II [Plasmodium vivax SaI-1]
 gi|148805512|gb|EDL46911.1| DNA topoisomerase II, putative [Plasmodium vivax]
          Length = 1502

 Score =  179 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 88/491 (17%), Positives = 173/491 (35%), Gaps = 51/491 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +   K   K A++ G +     YH HG +++  
Sbjct: 746  TERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSAYH-HGESSLQQ 801

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 802  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPIL 861

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++     I+    
Sbjct: 862  KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIENIKRYIN---- 916

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G +  E        D E + 
Sbjct: 917  ---------KEPLLP----------MIPWYKDFKGRIESNGKTGYETIGIIHKIDDETLE 957

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            + E+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 958  INELPIKKWTQDYKEFLEELLTDEKHQLIVDYIDNSSHEDICFTIKMDPAKMKKAEEEGL 1017

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRA 384
             +   L+S  +   + L     +         ILK F   R +    R  YL++K     
Sbjct: 1018 EKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKDFCFHRLKAYENRKSYLISKLEKEK 1077

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY----- 439
             ++   +  +  +     ++              +      DI  +              
Sbjct: 1078 KIISNKSKFILAIVNNELVVSKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQELLESV 1137

Query: 440  ---TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
                   +    +S      +L + +  LT    +++  +      E++   +I      
Sbjct: 1138 ENPEDNEEIIAGISVKDYDYLLSMPIFSLTLEKVEELLAQHKEKEKELEILKNITV--ET 1195

Query: 497  LLGIIKQELLS 507
            +     +++  
Sbjct: 1196 MWLKDIEKVEE 1206


>gi|38453805|dbj|BAD02203.1| DNA topoisomerase II [Arthroderma fulvum]
          Length = 1086

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 159/404 (39%), Gaps = 43/404 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 727

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 728  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 787

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 788  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGD 842

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ ++
Sbjct: 843  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIS 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 883  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKAVEEGLE 942

Query: 329  RYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L     + NMVA +         T   IL+AF A R ++  +R ++LL++ + +  
Sbjct: 943  EKFKLVKQIATSNMVAFDPEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLD 1002

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             L   A  V  + +   +I         +    +       + D
Sbjct: 1003 KLSNQARFVQMIIDGKLVISKKKKALLIQELQEKGFKPFPKVVD 1046


>gi|70947313|ref|XP_743285.1| DNA topoisomerase II [Plasmodium chabaudi chabaudi]
 gi|56522707|emb|CAH74370.1| DNA topoisomerase II, putative [Plasmodium chabaudi chabaudi]
          Length = 937

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 170/495 (34%), Gaps = 59/495 (11%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
             R+IP++ DG KP  R++L+G  +  +       K A++ G +     YH HG +++  
Sbjct: 227 TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE---CKVAQLVGYIAEHSAYH-HGESSLQQ 282

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 283 TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEFDDPIL 342

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++     ID    
Sbjct: 343 KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYID---- 397

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                    + P  P          +   Y   +G I   G S  E        D E + 
Sbjct: 398 ---------KEPLVP----------MVPWYKDFKGRIESNGKSGYETIGIINKIDDETLE 438

Query: 268 VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           +TE+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 439 ITELPIKRWTQDYKEFLEELLTDEKNQLILDYIDNSSHEDVCFTIKMDPVKLKKAEEEGL 498

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            +   L+S  +   + L     +       L     F       R      +       L
Sbjct: 499 EKVFKLKSTLTTTNMTLFDSNLKLQRYASELDILKDFCF----HRLNAYNERKSYLISKL 554

Query: 388 VGLAIAVANLDEVVRIIRFSPNPETARRELM---------------QRSWNASDIKDLID 432
                 ++N  + +  I         +++ +                      +I +   
Sbjct: 555 EKEKRIISNKTKFILAIINGELVVNKKKKKILVEELYRKGYDPYKDIHKVKKEEIFEQEL 614

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           L    +     +    ++      +L + +  LT    +++  +L     E++    I  
Sbjct: 615 LEAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLEKVEELLAQLKEKEQELEILKSITV 674

Query: 493 SRSRLLGIIKQELLS 507
               +     +++  
Sbjct: 675 --ETMWLKDIEKVEE 687


>gi|255076711|ref|XP_002502027.1| predicted protein [Micromonas sp. RCC299]
 gi|226517292|gb|ACO63285.1| predicted protein [Micromonas sp. RCC299]
          Length = 1459

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 163/426 (38%), Gaps = 41/426 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  ++ +   +K A++SG V     YH HG A++   +
Sbjct: 724  RSIPSVVDGFKPSQRKVLFSCFKRKLKSD---IKVAQLSGYVSEHSAYH-HGEASLASTI 779

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  S  + L+   G FG+    G   A+ RY   RL      +  +     +D+
Sbjct: 780  VGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIFTRLAPICRVIFPECDDALLDY 839

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
                DG   EP   L    P VLVNG  GI  G +T+IP  N  ++V     ++D+   +
Sbjct: 840  LDE-DGQVIEPEHYLPI-LPLVLVNGADGIGTGWSTSIPNFNPRDIVANIRRILDD---E 894

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                M        P      G   I+     G     I G   I     D   +V+TE+P
Sbjct: 895  CTERMH-------PWYRNFKGT--IEEEIVKGEIRYNITGKYEI----VDETTLVITELP 941

Query: 273  ---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
               +  +    LE +     +     I D ++         ++ +     A    + + +
Sbjct: 942  LRSWTTDYKDFLENMLSPKEKNAQPFITDYKEHHTDTTVHFIVTMTPENMAKAQKDGIEK 1001

Query: 330  YTSLQSLFSV-NMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               L +  S  NM A +      +  +   I++AFV  R +   RR   L+ +A      
Sbjct: 1002 KFKLCAKVSTSNMHAFDEKGGITKYSSPEAIMEAFVPLRLDAYARRRAMLIRQAEFE--- 1058

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
               L      +  ++ ++         ++ ++     A+    +      ++        
Sbjct: 1059 ---LKRMSNKVRFILAVVDGEMTIGRKKKSVLIEELEAAGYDKMPKTAKAAAAADAEPAE 1115

Query: 447  MYLSEV 452
              LS++
Sbjct: 1116 SGLSDI 1121


>gi|83317979|ref|XP_731396.1| DNA topoisomerase II [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491424|gb|EAA22961.1| DNA topoisomerase II, putative [Plasmodium yoelii yoelii]
          Length = 1489

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/495 (18%), Positives = 176/495 (35%), Gaps = 59/495 (11%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +   K   K A++ G +     YH HG +++  
Sbjct: 741  TERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSAYH-HGESSLQQ 796

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 797  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPIL 856

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++     ID    
Sbjct: 857  KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYID---- 911

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G S  E        D E + 
Sbjct: 912  ---------KEPLVP----------MVPWYKDFKGRIEPNGKSGYETIGIINKIDDETLE 952

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +TE+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 953  ITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDVCFTIKMDPIKLKRAEEEGL 1012

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +   L+S  +   + L   K +       L     F    +   T    ++       L
Sbjct: 1013 EKVFKLKSTLTTTNMTLFDPKLKLQRYASELDILKDFCFHRLNAYT----DRKNYLISKL 1068

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELM-------QRSWNASDIKDLID-------- 432
                  ++N  + +  I         +++ +       +      DI  L          
Sbjct: 1069 EKEKRIISNKTKFILAIINGELVVNKKKKKILVEELYRKGYDPYKDIHKLKKEEIFEQEL 1128

Query: 433  LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            L    +     +    ++      +L + +  LT    +++ ++L     E++    I  
Sbjct: 1129 LDAAENPEDNEEIIAGVTVKDYNYLLNMPIFSLTLEKVEELLSQLKEKEQELEILKSITV 1188

Query: 493  SRSRLLGIIKQELLS 507
                +     +++  
Sbjct: 1189 --ETMWLKDIEKVEE 1201


>gi|18369818|dbj|BAB84104.1| DNA topoisomerase II [Penicillium citrinum]
          Length = 1100

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 172/438 (39%), Gaps = 39/438 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++     R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 653  DHSVSKISYTDFINKELILFSMAD-NQRSIPSVVDGLKPGQRKVLYACFRRNLKKD---M 708

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 709  KVVELAGLVSGMTAYQ-HGETSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCA 767

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVG 185
            + RY   RL   A  +     +  + +  + DG   EP   +    P VL+NG  GI  G
Sbjct: 768  SARYIYTRLSPFARKIFHTADEPLLTYNED-DGKKIEPETYMPV-VPMVLINGADGIGTG 825

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATG 244
             +++IP +N  +VV+    ++    I+          G     G      +GI       
Sbjct: 826  WSSSIPNYNPEDVVNNLKRLMKGEPIEPMQPWFRGFTGEVVNMGGDRFKFSGIIK----- 880

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDES 303
                               +++ +TE+P +       +K+ ++++ +++     D +D +
Sbjct: 881  ---------------ETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYKDYN 925

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKA 360
                   VI+L        +   L     L     + N+VA +      +  T+  ILK 
Sbjct: 926  THDKVHFVIQLDEKNMKAALSEGLEEKFKLTKSIATSNLVAFDPEGRITKYATVDDILKE 985

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F   R +   RR ++ L++ +     L   A  V  + +   +I              + 
Sbjct: 986  FFTVRLKYYERRKQHQLSELQKELEKLSNQARFVQMIIDGKLVISKKKKSVLVNELREKG 1045

Query: 421  SWNASDIKDLIDLIDDSS 438
                + + D   L +D +
Sbjct: 1046 FKAFTKVADAAKLGEDEA 1063


>gi|3108059|gb|AAC15758.1| gyrase A [Enterococcus faecium]
          Length = 80

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 62/80 (77%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           GM ++GV  +K + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFG
Sbjct: 1   GMNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFG 60

Query: 119 SVDGDPPAAERYTECRLQKA 138
           SVDGD  AA RYTE R+ K 
Sbjct: 61  SVDGDGAAAMRYTEARMSKI 80


>gi|295315177|gb|ADF97676.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I+GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|218684029|gb|ACL00959.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/82 (59%), Positives = 63/82 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHF 141
           +DGD  AA RYTE RL K AH 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHE 82


>gi|3152672|gb|AAC17114.1| DNA gyrase subunit A [Shigella flexneri]
          Length = 81

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/81 (61%), Positives = 63/81 (77%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           G +WNK Y K AR  G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD
Sbjct: 1   GNDWNKAYKKSARAVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGD 60

Query: 124 PPAAERYTECRLQKAAHFLLD 144
             AA RYTE RL K AH L+ 
Sbjct: 61  SAAAMRYTEIRLAKIAHELMA 81


>gi|18369814|dbj|BAB84102.1| DNA topoisomerase II [Aspergillus niger]
          Length = 1391

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 170/434 (39%), Gaps = 43/434 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 710  DHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 765

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 766  KVVELAGHVSGMTAYQ-HGDVSLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCA 824

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G 
Sbjct: 825  SARYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGW 883

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  +VVD    +++  +I           G     G      +GI        
Sbjct: 884  SSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGFTGEVTSIGGDRFKFSGIIK------ 937

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 938  --------------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 983

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI++        +   L     L     + N+VA +      +  T+  ILK F
Sbjct: 984  HTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEF 1043

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R +   RR +Y LN+ +     L            V  II         ++ ++   
Sbjct: 1044 FAVRLKYYERRKQYQLNEMQKELEKL------SNQARFVQMIIDGELVVSKKKKNVLVVE 1097

Query: 422  WNASDIKDLIDLID 435
                  K    + D
Sbjct: 1098 LKDKGFKPFPKVAD 1111


>gi|18369820|dbj|BAB84105.1| DNA topoisomerase II [Penicillium marneffei]
          Length = 1162

 Score =  179 bits (454), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/470 (17%), Positives = 177/470 (37%), Gaps = 40/470 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  ++ +   +K   ++G V  M  Y  HG  ++   +
Sbjct: 695  RSIPSVVDGLKPGQRKVLYTCFKRNLKKD---MKVVELAGHVSGMTAYQ-HGETSLQQTI 750

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  + +   +  + +
Sbjct: 751  VGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFNQQDEPLLTY 810

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +++IP +N  ++V     ++D  + + 
Sbjct: 811  NED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEP 869

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G   P G      +G                         + +++ +TE+P
Sbjct: 870  MQPWFRGFNGEVTPQGPDRYKFSGRI--------------------HELNDKEVEITELP 909

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ ++++ ++      D +D +       VI++        +   L    
Sbjct: 910  IRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKAAVEEGLEEKF 969

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +  T+  ILK F A R +   RR ++ L++ + +     
Sbjct: 970  KLSRTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQHQLSELQKQLDKFT 1029

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID----LIDDSSYTIGSD 444
              A  +  + +   ++              +       + + +                +
Sbjct: 1030 NQARFIQMIIDGKLVVSKKKKATLITELKEKGFKPFPKVAEAVKAGETEQVVEEEESSEE 1089

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                ++      +L + +  LT    + +  ++    +EI E + +    
Sbjct: 1090 ANTEMASNAYDYLLGMAIWSLTQERVEKLLRQIGDKEVEIDELIKLSKEE 1139


>gi|134077492|emb|CAK96636.1| unnamed protein product [Aspergillus niger]
          Length = 1712

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 170/434 (39%), Gaps = 43/434 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 788  DHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 843

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 844  KVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCA 902

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G 
Sbjct: 903  SARYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGW 961

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  +VVD    +++  +I           G     G      +GI        
Sbjct: 962  SSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGFTGEVTSIGGDRFKFSGIIK------ 1015

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 1016 --------------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 1061

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI++        +   L     L     + N+VA +      +  T+  ILK F
Sbjct: 1062 HTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEF 1121

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R +   RR +Y LN+ +     L            V  II         ++ ++   
Sbjct: 1122 FAVRLKYYERRKQYQLNEMQKELEKL------SNQARFVQMIIDGELVVSKKKKNVLVVE 1175

Query: 422  WNASDIKDLIDLID 435
                  K    + D
Sbjct: 1176 LKDKGFKPFPKVAD 1189


>gi|317030635|ref|XP_001392968.2| DNA topoisomerase 2 [Aspergillus niger CBS 513.88]
          Length = 1707

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/434 (20%), Positives = 170/434 (39%), Gaps = 43/434 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 783  DHSVEKITYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 838

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 839  KVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQTFVGSNNINCLEPSGNFGSRLQGGSDCA 897

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +     +  + +  + DG   EP V     P +L+NG  GI  G 
Sbjct: 898  SARYIYTRLSPFARRIFHASDEPLLTYNVD-DGKTIEPEVYMPVVPMILINGADGIGTGW 956

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  +VVD    +++  +I           G     G      +GI        
Sbjct: 957  SSSIPNYNPEDVVDNLKRLMNGEEIKPMQPWFRGFTGEVTSIGGDRFKFSGIIK------ 1010

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 1011 --------------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 1056

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI++        +   L     L     + N+VA +      +  T+  ILK F
Sbjct: 1057 HTKVHFVIQMDEKHLKSAVEEGLEEKFKLTKTIATTNLVAFDPEGRITKYATVDDILKEF 1116

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R +   RR +Y LN+ +     L            V  II         ++ ++   
Sbjct: 1117 FAVRLKYYERRKQYQLNEMQKELEKL------SNQARFVQMIIDGELVVSKKKKNVLVVE 1170

Query: 422  WNASDIKDLIDLID 435
                  K    + D
Sbjct: 1171 LKDKGFKPFPKVAD 1184


>gi|240952142|ref|XP_002399322.1| DNA topoisomerase II, putative [Ixodes scapularis]
 gi|215490528|gb|EEC00171.1| DNA topoisomerase II, putative [Ixodes scapularis]
          Length = 1582

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/409 (22%), Positives = 150/409 (36%), Gaps = 43/409 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++L+   +     +K+ +K A+++G V     YH HG  ++   
Sbjct: 718  ERSIPSLVDGLKPGQRKVLYTCFK---RNDKREIKVAQLAGSVAEHSAYH-HGEMSLMST 773

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY    L   A  ++  L     D
Sbjct: 774  IIGLAQDFVGSNNINLLLPIGQFGTRLQGGKDAASPRYIFTMLSPLARLIVPALD----D 829

Query: 153  FRPN--YDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
               N  YD + + EP       P VLVNG  GI  G +T +P ++  EVV     +I   
Sbjct: 830  PVLNHLYDDNQKIEPEFYMPILPMVLVNGAEGIGTGWSTKVPNYDPREVVANLRRMIAGD 889

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            +            P  P      G                 R V   E        I +T
Sbjct: 890  E----------PKPMKPWFKNFKGTVDQVEEQ---------RFVVSGEVALLSSNSIEIT 930

Query: 270  EIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            E+P +       E + E +    EK    I D ++       R V+ +     +      
Sbjct: 931  ELPVRTWTQNYKENVLETMLHGTEKVPPMITDYKEYHTDTTVRFVVTMSEDKLSKAQDEG 990

Query: 327  LYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            L++   LQ+    + + L   K           I++ F   R E   +R  Y+L      
Sbjct: 991  LHKVFKLQTTLCTSSMVLFNSKGVLTTFRNSTEIMQDFYETRLEGYKKRKAYMLGLLTAE 1050

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
            A  L   A  +    + V  I      +     L +R ++   + +   
Sbjct: 1051 AKRLENQARFILEKIDNVIKIENRK-RKEMILTLRERGYDPDPLLEWKK 1098


>gi|339810|gb|AAA61210.1| topoisomerase II [Homo sapiens]
          Length = 886

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 37/327 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DG KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   
Sbjct: 585 ERSIPSLVDGFKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMT 640

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 641 IVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLK 700

Query: 153 FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           F   YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D 
Sbjct: 701 FL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD- 757

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                      P  P      G          G+    + G    E    DR  + +TE+
Sbjct: 758 ---------PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITEL 799

Query: 272 PY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           P     QV K  +LE +     +K    I+D ++       + V+++     A      L
Sbjct: 800 PVRTWTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGL 858

Query: 328 YRYTSLQSLFSVNMVALNGYKPERFTL 354
           ++   LQ+  + N + L  +       
Sbjct: 859 HKVFKLQTTLTCNSMVLFDHMGCLKKY 885


>gi|224458688|gb|ACN43207.1| DNA gyrase subunit A [Bacillus mojavensis]
          Length = 255

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 121/274 (44%), Positives = 171/274 (62%), Gaps = 26/274 (9%)

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
           SI IR  + IE+TS  +E+I+VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR 
Sbjct: 1   SITIRAKAEIEETSSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRN 60

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G R+VIE++R A+A VILN LY+ T+LQ+ F +NM+AL   +P+   L   L  ++  ++
Sbjct: 61  GMRIVIEIRRDANAHVILNNLYKQTALQTSFGINMLALVDGEPKVLNLKQCLVHYLDHQK 120

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V+ RRT Y L KA  RAH+L GL IA+ +LD V+ +IR S   E AR  L+++      
Sbjct: 121 VVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ------ 174

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 L+E Q +AIL++RL RLTGL R+ I  E  SL   I E
Sbjct: 175 --------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLIKLIAE 214

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
             +IL++  ++L II++EL  +K+  +  RRT I
Sbjct: 215 LKEILANEEKVLEIIREELTEIKERFNDERRTEI 248


>gi|38453813|dbj|BAD02207.1| DNA topoisomerase II [Arthroderma simii]
 gi|38453815|dbj|BAD02208.1| DNA topoisomerase II [Arthroderma simii]
          Length = 1089

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/404 (21%), Positives = 156/404 (38%), Gaps = 43/404 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I++        +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMDEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             L   A  V  + +   +I         +    +       + D
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKVVD 1048


>gi|157953085|ref|YP_001497977.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
 gi|155123312|gb|ABT15180.1| hypothetical protein NY2A_B781L [Paramecium bursaria Chlorella virus
            NY2A]
          Length = 1061

 Score =  179 bits (453), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/474 (20%), Positives = 181/474 (38%), Gaps = 60/474 (12%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + +     V + D +    + ++    L R+IP + DG KP  R++++   +  + 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVIYSAFKRNLT 677

Query: 67   WNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV 120
             +   VK A+ SG V     YH HG A++   +  +AQD+    ++  LL EGQ  FGS 
Sbjct: 678  TD---VKVAQFSGYVAEHSAYH-HGEASLQGTIVNLAQDYVGSNNINWLLPEGQ--FGSR 731

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      +  D   + + +  + DG   EP       P++LVNG
Sbjct: 732  LQGGKDHASARYIYMKLNPQTRQVFVDTDDNLLKYMYD-DGDKIEPEYYVPVIPSILVNG 790

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGI 237
              GI  G +TNIP++N  ++VD    +I   D+       +  +G    T   +    G+
Sbjct: 791  SSGIGTGWSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYKGFKGKIMETSPGVYVTKGL 850

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                                    + + IVV+E+P         E +  L+ +K I D  
Sbjct: 851  YM---------------------PNGKTIVVSELPIGKWTQDYKEHLDGLLEKKIISDFR 889

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLI 355
            +   ++D       +  +     +  ++ L   T+++S    NM A +      +  T +
Sbjct: 890  EKHSDTD-------VLFEIDFVGNPNIDILKLETTIRST---NMHAFDPSGKIKKYDTPL 939

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             I++ +   R+++ V+R  YLL            L           R I    N E    
Sbjct: 940  DIIREWFGVRKDLYVKRKAYLL----------EDLTHRTNIAQNKHRFITMVNNDEIIIN 989

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
            +  +   +A   K     +DD    + +     L+  +   +    +     L 
Sbjct: 990  KKHESVISAELEKLKFYKVDDKYDYLLNMRISSLTLERAEELKRESVKLEKELD 1043


>gi|38453809|dbj|BAD02205.1| DNA topoisomerase II [Arthroderma vanbreuseghemii]
          Length = 1089

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|38453811|dbj|BAD02206.1| DNA topoisomerase II [Trichophyton quinckeanum]
          Length = 1089

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|321268220|gb|ADW78918.1| DNA gyrase subunit A [Flavobacterium psychrophilum]
          Length = 89

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/89 (53%), Positives = 69/89 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKD 149
           + ++YDA+ RMAQ+WSLR LL++GQGNFGSVDGD PAA RYTE R++K +  ++ D+ K+
Sbjct: 1   DRSVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMRKISEEIMADIEKE 60

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
           TVDF+ N+D +  EP V+  + P +L+NG
Sbjct: 61  TVDFQLNFDDTLYEPKVMPTKVPTLLING 89


>gi|25006383|dbj|BAC24011.1| DNA topoisomerase II [Trichophyton interdigitale]
          Length = 1093

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 156/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 731

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 732  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 791

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 792  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 846

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 847  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 886

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 887  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 946

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 947  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1006

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1007 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1048


>gi|218684027|gb|ACL00958.1| DNA gyrase A subunit [Salmonella enterica]
          Length = 82

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 49/82 (59%), Positives = 63/82 (76%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPH ++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHCDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60

Query: 120 VDGDPPAAERYTECRLQKAAHF 141
           +DGD  AA RYTE RL K AH 
Sbjct: 61  IDGDSAAAMRYTEIRLAKIAHE 82


>gi|38453807|dbj|BAD02204.1| DNA topoisomerase II [Arthroderma persicolor]
          Length = 1086

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 157/404 (38%), Gaps = 43/404 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 727

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 728  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 787

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             VD     DG   EP       P +L+NG  GI  G +T+IP +N  +VVD    ++   
Sbjct: 788  NVD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVDNLKRLMAGE 842

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ ++
Sbjct: 843  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIS 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 883  ELPIRTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTNVHFIIQMEEKHMKKALEEGLE 942

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R ++LL++ + +  
Sbjct: 943  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSELQTQLD 1002

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             L   A  +  + +   +I         +    +       + D
Sbjct: 1003 KLSNQARFIQMIIDGKLVISKKKKALLIQELQEKGFKPFPKVAD 1046


>gi|121700316|ref|XP_001268423.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
 gi|119396565|gb|EAW06997.1| DNA topoisomerase II [Aspergillus clavatus NRRL 1]
          Length = 1735

 Score =  178 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 182/477 (38%), Gaps = 43/477 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  ++ +   +K   ++G V  M  Y  HG+A++   +
Sbjct: 803  RSIPSVIDGLKPGQRKVLYVSFRRNLKKD---MKVVELAGHVSGMTAYQ-HGDASLQQTI 858

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 859  VGLAQTFVGSNNVNCLEPSGNFGSRLQGGQDCASARYIYTRLSPFARRMFHPADEPLLTY 918

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P +L+NG  GI  G +++IP +N  ++VD    ++D   I  
Sbjct: 919  NVD-DGKQIEPENYVPVVPLLLINGADGIGTGWSSSIPNYNPEDIVDNLKRLMDGEPIKP 977

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G     G      +GI                          +++ +TE+P
Sbjct: 978  MQPWFRGFNGEVTAIGGDRFKFSGIIK--------------------EAGDKEVEITELP 1017

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ E+++  +      D +D +     R VI++        +   L    
Sbjct: 1018 IRTWTQDFKDKLEEIIKADKTPSFIKDYKDYNTHTKVRFVIQMDEKHMQSALSEGLEEKF 1077

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +  ++  ILK F   R +   RR +Y L++ +     L 
Sbjct: 1078 KLSKTIATTNLVAFDPEGRITKYASVDDILKEFFTVRLKFYERRKQYQLSELQRELDKLS 1137

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              A  V  + +   +I     P        +       + D +   +D       + +  
Sbjct: 1138 NQARFVQMIIDGALVISKKKKPVLIAELKEKGFKAIPKVADAVKAGEDEPVVEEGEESEE 1197

Query: 449  LSEVQTR-----AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
              + + +      +L + L  LT    + +R ++    +EI     I  S+  +   
Sbjct: 1198 AEDTEVQSNAYDYLLGMSLWSLTQERVEKLRRQIGEREVEIDAL--IKLSKEDIWKH 1252


>gi|168011945|ref|XP_001758663.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690273|gb|EDQ76641.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/527 (19%), Positives = 173/527 (32%), Gaps = 44/527 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG A++  
Sbjct: 695  LARSIPSMVDGLKPGQRKILFCCFKRNFVTQA---KVAQFSGYVSEHSAYH-HGEASLAS 750

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  + L+  +G FG+    G   A+ RY    L      L        +
Sbjct: 751  TIIGMAQNFVGSNNINLLSPEGQFGTREQGGKNHASPRYIFTCLAPITRALFPQPDDVLL 810

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            D+    DG   EP   C   P VLVNG  GI  G ++ +P +N  E+V     ++   ++
Sbjct: 811  DYMKE-DGQSIEPSWYCPIIPLVLVNGSEGIGTGWSSFVPNYNPREIVANIRRLLAGQEL 869

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P     +G          G  +  I G         D   I + E+
Sbjct: 870  T----------PMHPWYKSFMGTIECSATKDIGL-TYTITGTIE----QIDETTIKILEL 914

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E +  L+    + +   I D R+ +        + L     A  +   L 
Sbjct: 915  PVRKWTQDYKEFLDALMTPSDKNKEPFIKDFREHNTDTKVHFELTLSEENMAIALAEGLV 974

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   L +  S + + L   K    +  T   IL+ F   R ++ V+R    L   +    
Sbjct: 975  KKFKLTTTISTSNMHLFDAKGIIKKYDTPEQILEEFFHIRLDLYVKRKAVQLQNLQYELV 1034

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK-----DLIDLIDDSSYT 440
             +      +  + +   I+      +       +               ++         
Sbjct: 1035 KVDNKVRFILGVVKGEIIVNNRKRIDLLSELQHKGFAPFPKKAKSPDPPVVGADPLPEDN 1094

Query: 441  IGSDGTMYLSEVQTRAILELRLARLT-------GLGRDDIRNELNSLGIEIKECLDILSS 493
               +    +       +L + +  LT          RD +  E+  L     E L I   
Sbjct: 1095 EQDEKVKGVKVADYDYLLSMPIGSLTYEKVQQLRGQRDKMEEEVEELKRATPEALWIKDL 1154

Query: 494  RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
               L+ +  QE     D +   + +         +          V 
Sbjct: 1155 DEFLVKLDAQEEQEAIDAVYEAKHSAKEGNQTFKKPAPRKQAAPKVK 1201


>gi|307110827|gb|EFN59062.1| hypothetical protein CHLNCDRAFT_137783 [Chlorella variabilis]
          Length = 1566

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 135/339 (39%), Gaps = 34/339 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP++ DGLKP  R+I+F   +  ++ +   VK +++SG V     YH HG A++  
Sbjct: 691  LERSIPNMVDGLKPGQRKIMFACFKRNLKTD---VKVSQLSGYVSEHSAYH-HGEASLSG 746

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  +AQD+  S  +  +  QG FG+    G   A+ RY   RL      L ++     +
Sbjct: 747  TIVGLAQDFVGSNNVNYLVPQGQFGTRLQGGKDAASPRYIFTRLAPLTRHLFNEHDDRLL 806

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
             +  N +G   EP   +    P VLVNG  GI  G +T+IP  N  ++V     ++D   
Sbjct: 807  AY-LNEEGQSIEPEWYMPV-VPTVLVNGAEGIGTGWSTSIPNFNPRDIVANLRLMLDGEQ 864

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                           P      G         +G+    I GV +      D   + +TE
Sbjct: 865  ----------PVAMKPWYRGFKGTIEEVPTKTSGKS-YQICGVIN----QVDDTTLDITE 909

Query: 271  IPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E + E+V+   +     I D ++          + L      + +   L
Sbjct: 910  LPIRKWTQDYKEFLEEMVKPEDKNATPFIQDYKEYHTDLVVHFRVTLSESKMREALAAGL 969

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVA 363
                 L++  S   + L   +    +  +   IL+ F  
Sbjct: 970  LDKFKLKTKISTGNMMLFNAEGAIQKYASPEDILRDFYD 1008


>gi|289805577|ref|ZP_06536206.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 203

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 121/251 (48%), Gaps = 59/251 (23%)

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
           +V++LP  S  ARG+ ++N+L L   ERIT I+P  E E   N   V  AT  G V++  
Sbjct: 12  EVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVN---VFMATASGTVKKTA 68

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
           L++F +   +G IA+ L+  DE++ V+  +  ++++L +  G+ VRF   A+R   GR +
Sbjct: 69  LTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM-GRTA 127

Query: 722 VGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSV 781
            GVRGI LA  D+V+S+ I     A                                   
Sbjct: 128 TGVRGIKLAGDDKVVSLIIPRGEGA----------------------------------- 152

Query: 782 EGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
                             ILTV++ G+GKRT++ ++   +R+ +G+ +  V++ N  G++
Sbjct: 153 ------------------ILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERN--GSV 192

Query: 842 VAVFPVNDNDQ 852
           V    V+D DQ
Sbjct: 193 VGAVQVDDCDQ 203



 Score = 91.8 bits (226), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
              +  +        G                 I+         +   +   +  G  K+
Sbjct: 7   PSVLDEVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKK 66

Query: 812 TSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           T+  +F     +  GI A ++   N+   L+ V   + +D+++L S  G ++R   + +R
Sbjct: 67  TALTEFSRPRSA--GIIAVNL---NDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVR 121

Query: 872 IASRATKGVVIFSTAKDERVVSV 894
              R   GV     A D++VVS+
Sbjct: 122 AMGRTATGVRGIKLAGDDKVVSL 144



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 9/191 (4%)

Query: 715 VFAGRNSVG---VRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
             A R + G   V  + L   +++ +  I+   + +    +         ++    +   
Sbjct: 17  PEASRGARGRPIVNLLPLEANERITA--ILPVREYEEGVNVFMATASGTVKKTALTEFSR 74

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
             S    +    +  E    +L      ++  S  G   R      R   R+  G+R   
Sbjct: 75  PRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIK 134

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DER 890
           ++       +V++        I+ V+  G   R   +E    SRAT+GV+     + +  
Sbjct: 135 LA---GDDKVVSLIIPRGEGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGS 191

Query: 891 VVSVERIRESE 901
           VV   ++ + +
Sbjct: 192 VVGAVQVDDCD 202



 Score = 45.2 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ---IILVSDKGTLIRVPVNEI 870
            Y    ++R  +G    ++  +     + A+ PV + ++   + + +  GT+ +  + E 
Sbjct: 13  VYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGVNVFMATASGTVKKTALTEF 72

Query: 871 RIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
               R+  G++  +    + ++ V+    S+ V
Sbjct: 73  SRP-RSA-GIIAVNLNDGDELIGVDLTSGSDEV 103


>gi|255718235|ref|XP_002555398.1| KLTH0G08338p [Lachancea thermotolerans]
 gi|238936782|emb|CAR24961.1| KLTH0G08338p [Lachancea thermotolerans]
          Length = 1436

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/408 (19%), Positives = 144/408 (35%), Gaps = 43/408 (10%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +  ++ + I D +    + +++   + R+IP + DG KP  R++L+   +  + 
Sbjct: 655  EPGNTLDPTLSEIPICDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLYSCFKRKL- 712

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K  +K A++ G V     YH HG  ++   +  MAQD+  S  + L++  G FG+   
Sbjct: 713  --KSEIKVAQLIGYVSEHTSYH-HGEQSLAQTIVGMAQDYVGSNNIYLLKPNGAFGTRAA 769

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGG 179
             G   AA RY    L      + + L    + +    D    EP   L    P +LVNG 
Sbjct: 770  GGKDSAAPRYIFTELNNITPNIFNPLDNPLLTYLQE-DDQTIEPQWYLPV-IPMILVNGA 827

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +TNIP  N  E+V     +++   +D                    G  G   
Sbjct: 828  EGIGTGWSTNIPCFNPLEIVQNIKKLMNGEPMDDM-------------APFYRGWEGRLQ 874

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIA 297
                      + G             + +TE+P +   + + E +   +   EK    I 
Sbjct: 875  KIDG--QRYRMYGRIE----QVGPRTLEITELPAKTWISTIKEHLLLGLAGNEKTKPWIK 928

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
            D++ E+     +  +EL      +      Y    L S  S+  +              +
Sbjct: 929  DMQ-ENHGATIKFTVELTDEEMQNTRRIGFYERFKLVSTISLANMVAFDPNGRIKKYEDV 987

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                  F    +           + + H+   L   V  L +  R I+
Sbjct: 988  RDILSDFYYVRLEY-------FQKRKDHMSERLQWQVEKLSQQTRFIK 1028


>gi|170592146|ref|XP_001900830.1| Probable DNA topoisomerase II [Brugia malayi]
 gi|158591697|gb|EDP30301.1| Probable DNA topoisomerase II, putative [Brugia malayi]
          Length = 1570

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 90/421 (21%), Positives = 166/421 (39%), Gaps = 39/421 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   
Sbjct: 762  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMST 817

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   + ++ + 
Sbjct: 818  IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTRALFPAVDENVLR 877

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   ++ + + EP   C   P VLVNG  GI    +T IP +N  E+VD    +I   + 
Sbjct: 878  FL--FEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPNYNPREIVDNMRRLIRGEE- 934

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G     +           R +   E      + I +TE+
Sbjct: 935  ---------PKPLIPWFKNFRGTIEKLDE---------SRYICSGEIALLGDDTIEITEL 976

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E + E +    +K+   I D ++       + V+++      +  +  L+
Sbjct: 977  PIRTWTQNYKESVLESMLEGSDKQPPLIQDFKEYHTDTTVKFVVKMNPAKLREAKMEGLH 1036

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  +++ + L            +  I K F   R++  + R  +     R ++ 
Sbjct: 1037 KIFKLQTAINISSMVLFDPLGCLRRFSNVEEICKEFFEIRKKKYIERKAFQEGMLRAQSE 1096

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L   A  +    +   +I           +L+++ ++   +K   +L       +  + 
Sbjct: 1097 RLSNQARFILEKIKGEILIENKR-KAVIVEQLVKKGFDPDPVKKWKELQRKRELEMTGEX 1155

Query: 446  T 446
             
Sbjct: 1156 Q 1156


>gi|19074112|ref|NP_584718.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|19068754|emb|CAD25222.1| DNA TOPOISOMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1144

 Score =  178 bits (451), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 95/450 (21%), Positives = 168/450 (37%), Gaps = 56/450 (12%)

Query: 17   TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
            T +SI+D +    + +++   + R+IP L DGLKP  R+++F   +  +      +K A+
Sbjct: 641  TQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNLRSE---IKVAQ 696

Query: 77   ISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERY 130
            + G V  +  YH HG  ++   +  +AQD+  S  + L+   G FGS    G   A+ RY
Sbjct: 697  LVGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGKDAASPRY 755

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
                L      + ++     +++  N D    EP       P VLVNG  GI  G +T+I
Sbjct: 756  IFTSLSPLTRMIFNENDDAILNY-LNDDNFSIEPEFYVPIIPMVLVNGAEGIGTGWSTSI 814

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P  N  +VV+    +I   D               P      G          G G   +
Sbjct: 815  PNFNPVDVVENIRRMIRGED----------PVEMVPYYRNFRGTIE-----KIGEGKFQV 859

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRV 310
             G+            + +TE+P         E +  LV+     D  +   E   +    
Sbjct: 860  SGIYE------GDMDLEITELPVGTWTLNYKEFLESLVQAGVARDFKEYHTE---KTVSF 910

Query: 311  VIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
             ++L         ++ L   +++     V     N    +  T   ILK F   R    +
Sbjct: 911  TVKLS------KPVSNLKLNSTITVNNMVCFDE-NLRIKKYATPQEILKEFYGVRLRYYL 963

Query: 371  RRTKYLLNKARDRAHVLV---GLAIAVANLDEVV------RIIRFSPNPETARRELMQRS 421
             R + +L   R+    L         V+  + V+       +I    +   AR +  +  
Sbjct: 964  IRKENMLKVMREELEKLENKVRFIKEVSMGELVISRRRKGEVIFDLESRGYARADDYEYL 1023

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
             + S +   ++ I+     + ++    LSE
Sbjct: 1024 LSMSILSLTVERIE----RLSNEHAKRLSE 1049


>gi|226294840|gb|EEH50260.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
          Length = 1760

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 143/384 (37%), Gaps = 32/384 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V  +   +K   ++G V  M  Y  HG+ ++   +
Sbjct: 878  RSIPSVVDGLKPGQRKVLYTCFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDVSLQQTI 933

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 934  VGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLLTY 993

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P VL+NG  GI  G +T+IP +N  ++V     ++D      
Sbjct: 994  NVD-DGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGE---- 1048

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 1049 ---------PLVPMQPWFRGFTG--EVVSLGGERYKFSGRIS----QVGENEVEITELPI 1093

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       VI+L    +A  I   L     
Sbjct: 1094 RCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFK 1153

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
            L    + + +     +               F    +    K  +         +  L  
Sbjct: 1154 LSKTIATSNLVAFDPEGRITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKLRR 1213

Query: 393  AVANLD-EVVRIIRFSPNPETARR 415
             +   + EV  +I+ S      + 
Sbjct: 1214 QIGEKEIEVDNLIKLSKEDIWRKD 1237


>gi|7437445|pir||T10466 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) II - malaria
            parasite (Plasmodium falciparum)
 gi|3980316|emb|CAA55900.1| DNA topoisomerase (ATP-hydrolysing) [Plasmodium falciparum]
          Length = 1397

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 88/541 (16%), Positives = 180/541 (33%), Gaps = 77/541 (14%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +       K A++ G +     YH HG +++  
Sbjct: 735  TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE---CKVAQLVGYIAEHSAYH-HGESSLQQ 790

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 791  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPIL 850

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  +++D     I+    
Sbjct: 851  KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYIN---- 905

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G +  E        D + + 
Sbjct: 906  ---------KEPLIP----------MVPWYKDFKGRIESNGKTGYETIGIINKIDNDTLE 946

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +TE+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 947  ITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLQKAEEEGL 1006

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +   L+S  +   + L     +       L     F      +R K   N+       L
Sbjct: 1007 EKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKEFCY----QRLKAYENRKSYLISKL 1062

Query: 388  VGLAIAVANLDEVVRIIRFSP--------------------NP-----ETARRELMQRSW 422
                  ++N  + +  I  +                     +P     +  + E+ ++  
Sbjct: 1063 EKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQEL 1122

Query: 423  ------NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                     + + +  +       + S     L+  +   +L     +   L        
Sbjct: 1123 LDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITV 1182

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
                  +I++  + +         ++       ++    R+          + +     E
Sbjct: 1183 ETMWLKDIEKVEEAIE----FQRNVELSNREESNKFKVARKQGPSSMKKKKKKKKLSSDE 1238

Query: 537  D 537
            +
Sbjct: 1239 E 1239


>gi|46370596|gb|AAS90120.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1662

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 187/491 (38%), Gaps = 68/491 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +   K  +K A++SG V     YH HG  ++   +
Sbjct: 672  RSIPSLCDGLKPGQRKILFACFKRNL---KNEIKVAQLSGYVAEHSAYH-HGEQSLESTI 727

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              MAQ +    ++  L+  GQ  FGS  + G   A+ RY    L K    +  +   D +
Sbjct: 728  VGMAQSFVGTNNINYLMPIGQ--FGSRNMGGKEAASARYIHTCLNKITRCVFPEPD-DHI 784

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +    +G   EP+      P  L+NG  GI  G +T+IP +N  E+VD     +     
Sbjct: 785  LYYLEDEGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMGVPF 844

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                L+   +G    TG +              +  I + G  H+     +   I +TE+
Sbjct: 845  T--DLLPWYKG---FTGEISNNE----------KSQITVSGKYHL----VNETTIEITEL 885

Query: 272  PYQV----NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P +      K  + EK+     + +  +I D+++         V+++       V    +
Sbjct: 886  PIKKWIRDYKNFLEEKLES--TKDKDPEIEDIKEYHAGNRVHFVVKMSEKQMEKVQREGI 943

Query: 328  YRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             +Y  LQS      + L  ++        +  I++ F   R     RR +YL++K     
Sbjct: 944  DKYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVSKIERDL 1003

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
             +L            ++ +I  S     A+R+ + +  +      + D+    S      
Sbjct: 1004 EIL------SNKKRFILAVINESIRVRNAKRKDLIKELSVQGYVQMKDMPKIKSSK---- 1053

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                         L  +L +      ++   E N   I  KE   +LS    +  +  ++
Sbjct: 1054 -------------LTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLP--MWSLTYEK 1098

Query: 505  LLSVKDELDTP 515
            +  +K E    
Sbjct: 1099 VEEIKQEQKNK 1109


>gi|146182234|ref|XP_001024182.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|146143912|gb|EAS03937.2| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1680

 Score =  178 bits (450), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 105/491 (21%), Positives = 187/491 (38%), Gaps = 68/491 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +   K  +K A++SG V     YH HG  ++   +
Sbjct: 690  RSIPSLCDGLKPGQRKILFACFKRNL---KNEIKVAQLSGYVAEHSAYH-HGEQSLESTI 745

Query: 98   ARMAQDW----SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
              MAQ +    ++  L+  GQ  FGS  + G   A+ RY    L K    +  +   D +
Sbjct: 746  VGMAQSFVGTNNINYLMPIGQ--FGSRNMGGKEAASARYIHTCLNKITRCVFPEPD-DHI 802

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +    +G   EP+      P  L+NG  GI  G +T+IP +N  E+VD     +     
Sbjct: 803  LYYLEDEGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPCYNPRELVDSIEKRMMGVPF 862

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                L+   +G    TG +              +  I + G  H+     +   I +TE+
Sbjct: 863  T--DLLPWYKG---FTGEISNNE----------KSQITVSGKYHL----VNETTIEITEL 903

Query: 272  PYQV----NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            P +      K  + EK+     + +  +I D+++         V+++       V    +
Sbjct: 904  PIKKWIRDYKNFLEEKLES--TKDKDPEIEDIKEYHAGNRVHFVVKMSEKQMEKVQREGI 961

Query: 328  YRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             +Y  LQS      + L  ++        +  I++ F   R     RR +YL++K     
Sbjct: 962  DKYFKLQSTIPTTNMVLFNHEGKLTRYANICEIMEEFYEVRLNAYKRRKEYLVSKIERDL 1021

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
             +L            ++ +I  S     A+R+ + +  +      + D+    S      
Sbjct: 1022 EIL------SNKKRFILAVINESIRVRNAKRKDLIKELSVQGYVQMKDMPKIKSSK---- 1071

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                         L  +L +      ++   E N   I  KE   +LS    +  +  ++
Sbjct: 1072 -------------LTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLP--MWSLTYEK 1116

Query: 505  LLSVKDELDTP 515
            +  +K E    
Sbjct: 1117 VEEIKQEQKNK 1127


>gi|124809097|ref|XP_001348490.1| DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
 gi|23497385|gb|AAN36929.1|AE014821_16 DNA topoisomerase II, putative [Plasmodium falciparum 3D7]
          Length = 1472

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 88/541 (16%), Positives = 180/541 (33%), Gaps = 77/541 (14%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +       K A++ G +     YH HG +++  
Sbjct: 735  TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE---CKVAQLVGYIAEHSAYH-HGESSLQQ 790

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 791  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPIL 850

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  +++D     I+    
Sbjct: 851  KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIDNIKRYIN---- 905

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G +  E        D + + 
Sbjct: 906  ---------KEPLIP----------MVPWYKDFKGRIESNGKTGYETIGIINKIDNDTLE 946

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +TE+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 947  ITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKMDPAKLQKAEEEGL 1006

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +   L+S  +   + L     +       L     F      +R K   N+       L
Sbjct: 1007 EKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKEFCY----QRLKAYENRKSYLISKL 1062

Query: 388  VGLAIAVANLDEVVRIIRFSP--------------------NP-----ETARRELMQRSW 422
                  ++N  + +  I  +                     +P     +  + E+ ++  
Sbjct: 1063 EKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQEL 1122

Query: 423  ------NASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
                     + + +  +       + S     L+  +   +L     +   L        
Sbjct: 1123 LDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEKVEDLLTQLKEKERELEILRNITV 1182

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
                  +I++  + +         ++       ++    R+          + +     E
Sbjct: 1183 ETMWLKDIEKVEEAIE----FQRNVELSNREESNKFKVARKQGPSSMKKKKKKKKLSSDE 1238

Query: 537  D 537
            +
Sbjct: 1239 E 1239


>gi|302422958|ref|XP_003009309.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
 gi|261352455|gb|EEY14883.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
          Length = 1688

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 94/502 (18%), Positives = 186/502 (37%), Gaps = 40/502 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +  +  +    K   ++G V  K  YH HG  ++   +
Sbjct: 752  RSIPSVLDGLKPGQRKVMFACFKRNLTKD---QKVVELAGYVSEKAAYH-HGEMSLQQTI 807

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +   L +  ++ 
Sbjct: 808  IGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHTRLSPFARKIFSVLDEPNLEV 867

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            +   DG   EP V     P VL NG  GI  G +T+IP ++  E+V      +   D D 
Sbjct: 868  QME-DGKPIEPKVYAPIIPMVLCNGADGIGTGWSTSIPNYHPMEIVRAIKRRMGRLDSDD 926

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                       +  G         K+ Y          G+   +  +G+   I++ E+P 
Sbjct: 927  TEGKPFETMMPWFRGWKGTPEPAEKDRYKF-------NGIYETDDKTGE---IIIKELPI 976

Query: 274  QVNKAAMLEKIAELVREKRIV-DIADLRDESDRQGYRVVIELKRGASADVILNQ-----L 327
            ++       K+ E++   +    I D ++ +D +    VI+L      D+          
Sbjct: 977  RMWTDDFKAKLEEVISGAKGPAWIKDYKEFNDHKNVNFVIQLDEKHYKDIHKTHEGIMDR 1036

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR-------TKYLLNKA 380
            ++     +  ++      G   +   +  IL+ F  +R ++   R             K 
Sbjct: 1037 FKLNKQVATSNLVAFDSTGRIRKYEKVEDILEEFYVYRLDMYSARKKHWLGVYHSDYRKL 1096

Query: 381  RDRAHVLVGLAIAVANLDE-----VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            +++A  +  +      + +     +V+ +R        + +  +++    +  D  D  +
Sbjct: 1097 KNQARFIQEIIDGELIVSKKRKPVLVQELRDRKYEAFPKNDGKKQATTEEEDMDASDN-E 1155

Query: 436  DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            D S    +D    LS       LE      + + +    ++      E       L   +
Sbjct: 1156 DDSVGGAADYDYLLSLPIWSLTLERLERLNSAIMKKKGEHDALLAQSEKDLWCQDLDEFT 1215

Query: 496  RLLGIIKQELLSVKDELDTPRR 517
                   +    ++ +++   R
Sbjct: 1216 EEWEAQLEMDDKIQSKINRMGR 1237


>gi|58258575|ref|XP_566700.1| DNA topoisomerase II [Cryptococcus neoformans var. neoformans JEC21]
 gi|134106673|ref|XP_778347.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50261050|gb|EAL23700.1| hypothetical protein CNBA3470 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57222837|gb|AAW40881.1| DNA topoisomerase II, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1272

 Score =  178 bits (450), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/497 (18%), Positives = 182/497 (36%), Gaps = 47/497 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  + S+ I+D +    + +++   + R+IP + DGLKP  R++LFG  +  +      +
Sbjct: 759  DHDVQSLPISDFVNKELILFSMADNI-RSIPSVADGLKPGQRKVLFGCFKRNLTKE---I 814

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V  K  YH HG A++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 815  KVAQLAGYVSEKTAYH-HGEASLTSTIVGLAQNFVGSNNINLLDPNGQFGTRLAGGKDAA 873

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIA 183
            + RY    L +    +         D   NY   DG   EP       P VL+NG  GI 
Sbjct: 874  SARYIFTNLPRMTRAIFHPAD----DGLLNYLVEDGMSIEPDYFMPTVPMVLINGADGIG 929

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +T IP +N  ++V+    ++   + +                    G  G       
Sbjct: 930  TGWSTAIPNYNPVDIVENLRRMMRGEEPEKMTPWF-------------RGFKGFIERIDQ 976

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRD 301
                  + G+        +   + +TE+P +       E + E+    +K    I D  +
Sbjct: 977  --DKYKVSGIIE----KINDTTLEITELPIRRWTQDFKEMLEEMTTGTDKVPQTIKDYEE 1030

Query: 302  ESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
                      + +     AD         ++ T+     ++    LNG   +  +   IL
Sbjct: 1031 HHTDTTVHFRVHMTEKNLADAEKEGFDKRFKLTTSLGTGNMVCFDLNGKIKKYASPEEIL 1090

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRE 416
            + F   R E    R ++L ++   +      L+     +  ++   ++           E
Sbjct: 1091 EEFFHKRLEFYGHRKQHLADELNRQ---FERLSNQARFVHMIITKELVVSGKRRPDIVAE 1147

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
            L    +     K+      ++      +            +L + +  LT    + +  E
Sbjct: 1148 LRSLKFKPFPKKERAKEEGENEAAEEEEDGDEGQASDYDYLLGMAIWSLTSEKVEKLLAE 1207

Query: 477  LNSLGIEIKECLDILSS 493
             ++   E+ E L +  +
Sbjct: 1208 RDAKEQELIELLKLSPN 1224


>gi|38453817|dbj|BAD02209.1| DNA topoisomerase II [Trichophyton tonsurans]
          Length = 1089

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/402 (20%), Positives = 155/402 (38%), Gaps = 43/402 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   VK   ++G V  M  Y  HG+ +++  +
Sbjct: 674  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---VKVVELAGYVSGMTAYQ-HGDNSLHTTI 729

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 730  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 789

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P +L+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 790  NID-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGE 844

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 845  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTADNEVEIT 884

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P         +K+ E+++ +++     D +D +       +I+++       +   L 
Sbjct: 885  ELPICTWTQDFKDKLEEIIKAEKVPSFIKDYKDYNTHTDVHFIIQMEEKHMKKALEEGLE 944

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  +R +YLL++ + +  
Sbjct: 945  EKFKLVKQIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQYLLSELQTQLD 1004

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             L   A  V  + +   +I         +    +       +
Sbjct: 1005 KLSNQARFVQMIIDGKLVISKKKKAVLIQELQEKGFKPFPKV 1046


>gi|115390190|ref|XP_001212600.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
 gi|114194996|gb|EAU36696.1| DNA topoisomerase 2 [Aspergillus terreus NIH2624]
          Length = 1732

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 99/531 (18%), Positives = 200/531 (37%), Gaps = 51/531 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 781  DHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 836

Query: 73   KCARISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V G   Y  HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 837  KVVELAGHVSGTTAYQ-HGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCA 895

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +  +     + +  + DG+  EP V     P +L+NG  GI  G 
Sbjct: 896  SARYIYTRLSPFARRVFHNHDDPLLTYNED-DGAKIEPEVYVPVVPMILINGADGIGTGW 954

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  ++V+    ++D   +           G     G      +GI        
Sbjct: 955  SSSIPNYNPEDIVENLKRMMDGEPLKPMQPWFRGFTGEVTAVGQDRFKFSGIIK------ 1008

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 1009 --------------ETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 1054

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI++        I   L     L     + N+VA +      +  ++  I+K F
Sbjct: 1055 HTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPEGRITKYASVEDIMKEF 1114

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             A R +   RR +Y LN+ +     L   A  V  + +   +I              +  
Sbjct: 1115 YAVRLKYYERRKQYQLNEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKEKDF 1174

Query: 422  WNASDIKDLID-LIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNEL 477
                 +K+ +     +       D     +EV +     +L + +  LT    + +R ++
Sbjct: 1175 KPFPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLRRQI 1234

Query: 478  NSLGIEIK-------ECLDILSSRSRLLGIIKQELLSVKDE---LDTPRRT 518
                +EI        E +        +     Q     + +    +  RRT
Sbjct: 1235 GDKELEIDTLIKLSKEDIWKRDLEDFINEWRFQNDEEARRQRKVANMGRRT 1285


>gi|146743236|gb|ABQ42863.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 88

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 47/87 (54%), Positives = 62/87 (71%)

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           IY  L R+AQ W++R  L++GQGNFGS   D PAA RYTECR+   A  ++ D+ ++TVD
Sbjct: 1   IYATLVRLAQSWNMRYPLVDGQGNFGSRGNDGPAAMRYTECRMTPLAMEMVRDIRENTVD 60

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGG 179
           F PNYDG  QEP +L +R PN+L+NG 
Sbjct: 61  FSPNYDGKTQEPDILPSRVPNLLMNGS 87


>gi|328773079|gb|EGF83116.1| hypothetical protein BATDEDRAFT_18312 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1218

 Score =  177 bits (449), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 96/494 (19%), Positives = 181/494 (36%), Gaps = 51/494 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T +S+ D +    + +++     R+IP   DG KP  R+ILF   +  +   K  +
Sbjct: 732  DHSVTEISLPDFINRELILFSMAD-NARSIPSSVDGFKPGQRKILFACFKRNL---KSEI 787

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  MAQ++  S  L ++E  G FG+    G   A
Sbjct: 788  KVAQLAGYVAEHSAYH-HGEQSLNATIVNMAQNFIGSNNLGVLEPLGQFGTRLQGGKDAA 846

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            + RY    L   A  +        + +  + DG   EP   L    P +LVNG  GI  G
Sbjct: 847  SPRYIFTNLTPLARTVFHPSDDPLLTYLVD-DGQNIEPEWYLPV-LPMLLVNGADGIGTG 904

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +++IP +N  ++V+    ++ + ++                         I   Y    
Sbjct: 905  WSSSIPNYNPRDIVECLHRLMRHEEL-----------------------FEIHPWYRGFS 941

Query: 246  GSI----VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADL 299
            G I      R          D   + +TE+P +    +  E++   +   EK+   I D 
Sbjct: 942  GKIERETPERYKVTGCIRKIDSNTVEITELPIRTWTQSYKEQLEAWLTGTEKQTAWIKDY 1001

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA---LNGYKPERFTLIG 356
            ++         ++ L   A +      L +   L S  SV+ +    L G   +   +  
Sbjct: 1002 KEYHTDSKVHFIVTLTDQAMSLAESEGLEKRFKLISSVSVSNIVCFDLEGRIRKYDGVQD 1061

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            I+K F   R     +R  ++L         L      V  +     +++     +  +  
Sbjct: 1062 IIKDFYELRLSYYQKRKNHMLQTLTFEYERLESKVRFVTEIITGKLVVQNRKRIDLLKEL 1121

Query: 417  LMQRSWNASDIKDLIDLI-DDSSYTIGSDGTMYLSEVQ----TRAILELRLARLTGLGRD 471
            + ++       K   +           +DG   + +         +L + +  LT     
Sbjct: 1122 VTRKYKLIPKKKAGSEATNGSEGSDDANDGDESVQDDDPRQGYDYLLSMPIWNLTWEKVQ 1181

Query: 472  DIRNELNSLGIEIK 485
             ++ E+     EIK
Sbjct: 1182 QLQKEMQDREDEIK 1195


>gi|18369810|dbj|BAB84100.1| DNA topoisomerase II [Aspergillus flavus]
          Length = 1219

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 170/434 (39%), Gaps = 43/434 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 673  DHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 728

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 729  KVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCA 787

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G 
Sbjct: 788  SARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGW 846

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  ++VD    ++D  +            G     G      +GI        
Sbjct: 847  SSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRGFTGEVTDVGGDRFKFSGIIK------ 900

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 901  --------------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 946

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI+L        +   L     L     + N+VA +      +  T+  ILK F
Sbjct: 947  HTKVHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEF 1006

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              +R +   +R +Y L++ +        L         V  II         ++ ++ + 
Sbjct: 1007 YTYRLKFYEKRKQYQLSQLQKE------LDKLSNQARFVQEIIDGKLVVSKKKKNVLVQE 1060

Query: 422  WNASDIKDLIDLID 435
                  K    + +
Sbjct: 1061 LKDKGYKAFPKVAE 1074


>gi|17535065|ref|NP_496536.1| TOPoisomerase family member (top-2) [Caenorhabditis elegans]
 gi|6175065|sp|Q23670|TOP2_CAEEL RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
            topoisomerase II
 gi|3878527|emb|CAA88867.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
 gi|3881920|emb|CAA94177.1| C. elegans protein K12D12.1, partially confirmed by transcript
            evidence [Caenorhabditis elegans]
          Length = 1520

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 108/519 (20%), Positives = 197/519 (37%), Gaps = 54/519 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   
Sbjct: 747  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAEISAYH-HGEQSLMGT 802

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L      + + 
Sbjct: 803  IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRTLFPAHDDNVLR 862

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   Y+ + + EP   C   P VLVNG  GI  G +TNIP +N  E+V     +I     
Sbjct: 863  FL--YEENQRIEPEWYCPIIPMVLVNGAQGIGTGWSTNIPNYNPRELVKNIKRLIAG--- 917

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIV 267
                                  +  +   Y   RG I+     R   + E    D   I 
Sbjct: 918  --------------------EPQKALAPWYKNFRGKIIQIDPSRFACYGEVAVLDDNTIE 957

Query: 268  VTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +TE+P +       EK+ E +    +K+   I D ++       + V++L  G   ++  
Sbjct: 958  ITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELER 1017

Query: 325  NQ-LYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
             Q L++   LQ++ +   + L           +   I + F   R+E  V+R +YLL   
Sbjct: 1018 GQDLHQVFKLQAVINTTCMVLFDAAGCLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVL 1077

Query: 381  RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL-MQRSWNASDIKDLIDLIDDSSY 439
            + +         A   L ++   I      + A  ++ ++  ++A  +K   +  +    
Sbjct: 1078 QAQ--SKRLTNQARFILAKINNEIVLENKKKAAIVDVLIKMKFDADPVKKWKE--EQKLK 1133

Query: 440  TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             +   G + L E    A+       ++            S    +     I  S      
Sbjct: 1134 ELRESGEIELDEDDLAAVAVEEDEAISSA--AKAVETKLSDYDYLVGMALIKLSEEEKNK 1191

Query: 500  IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDM 538
            +IK+    + +     ++T       D+++    + +  
Sbjct: 1192 LIKESEEKMAEVRVIEKKTWQDLWHEDLDNFVSELDKQE 1230


>gi|295315163|gb|ADF97669.1| gyrase subunit A [Campylobacter coli]
 gi|295315165|gb|ADF97670.1| gyrase subunit A [Campylobacter coli]
          Length = 77

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 50/77 (64%), Positives = 60/77 (77%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I+GQGNFG
Sbjct: 61  QDFSMRYPSIDGQGNFG 77


>gi|291000712|ref|XP_002682923.1| DNA topoisomerase II [Naegleria gruberi]
 gi|284096551|gb|EFC50179.1| DNA topoisomerase II [Naegleria gruberi]
          Length = 1457

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 100/491 (20%), Positives = 193/491 (39%), Gaps = 46/491 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R+ILF   +  +   KK +K A+++G V  +  YH HG  ++   +
Sbjct: 714  RSIPSIVDGLKPGQRKILFSCFKRNL---KKEIKVAQLAGYVSEQSAYH-HGEDSLNGTV 769

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+    G   A+ RY   +L +   ++        +++
Sbjct: 770  VNMAQNFVGSNNINLLYPGGMFGTRLQGGKDSASPRYIFTKLSEITRYIFPKADDPVLEY 829

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VLVNG  GI    +TNI T+N  ++V+G  A+I     + 
Sbjct: 830  LDD-DGQSIEPRFYVPILPMVLVNGSEGIGTAWSTNIETYNPVDIVEGLKALI--KGEEA 886

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                   +G             GI             +GV        D   + ++E+P 
Sbjct: 887  KEFHPWYKG-----------FDGIIE--RLAPTKWQTKGVIE----KIDDNTLDISELPI 929

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            ++   +  E++ +++  +    + D R+          +++      D     LY Y  L
Sbjct: 930  RIWTESFKERLEKMMEAQ---QVDDFRENHTDVTVSFTVKMTDKQMKDAEDAGLYDYFKL 986

Query: 334  QSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-G 389
               FS + + L   +    E  T++ ILK F   R +   +R +Y+L K +    +L   
Sbjct: 987  FKKFSTSNMVLFSEEGGIKEYETVLDILKEFYPIRLKFYGKRKEYMLEKMKKELEILSNK 1046

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL-----IDLIDDSSYTIGSD 444
            +   +  ++E +++ +     +  +    ++  +    K +     I   ++        
Sbjct: 1047 VRFIMEVINETIQV-KKRKKADLLKELKTKKYSSFPKEKKIAAAGDIQNEEEEEEEDEEK 1105

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                L++     +L + L  LT      +  E      E+++  +  +    +      E
Sbjct: 1106 DVADLTDG-YNYLLSMPLWSLTVEKVKKLEKEKEEKVKEVEQLEN--TKPETMWLSELDE 1162

Query: 505  LLSVKDELDTP 515
             L   D  +  
Sbjct: 1163 FLEKLDSYEQK 1173


>gi|170047758|ref|XP_001851377.1| DNA topoisomerase 2 [Culex quinquefasciatus]
 gi|167870064|gb|EDS33447.1| DNA topoisomerase 2 [Culex quinquefasciatus]
          Length = 1358

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 86/408 (21%), Positives = 162/408 (39%), Gaps = 37/408 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 730  RSIPCVLDGLKPGQRKVMFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQSLCSTI 785

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+   G FG+    G   A+ RY    +      +   L    +++
Sbjct: 786  VNLAQNFVGSNNINLLYPGGQFGTRLAGGKDSASPRYIFTMMSALTRLIFHPLDDPLLEY 845

Query: 154  RPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  YD + + EP+  L    P VLVNG  GI  G +T IP HN  +++     +++  + 
Sbjct: 846  Q--YDDNQKIEPLWYLPI-IPMVLVNGSEGIGTGWSTKIPLHNPRDIIANLRRMLNGEEP 902

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             +         P +      +   G +     G  S++      I +             
Sbjct: 903  KVLH-------PWYKNFRGSVEVVGPQKYLTVGNLSLLENQKIEISELPIGTWT------ 949

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG-----ASADVILNQ 326
              QV K   LE +     EK+   I+D ++ +     R V+    G      + D   ++
Sbjct: 950  --QVYKENTLEPLLHG-SEKQKAVISDYKEYNTDTTVRFVVSFLPGEFDKLYAEDGGFHR 1006

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
            +++ TS  S   ++      Y         I + +   R +   +R  YL    +  A  
Sbjct: 1007 VFKLTSSISTTCMHAFDDKNYLRRYEHANDIFQEYYKIRLDFYHKRKAYLEGMLQAEADR 1066

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
            L   A  +    +   ++      +    EL++R +    +K+    +
Sbjct: 1067 LTDQARFIMEKCDRTLVVENKK-RKVMIDELIKRGYRPDPVKEWKRKV 1113


>gi|56554393|pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
           Topoisomerase Iv
          Length = 323

 Score =  177 bits (448), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 77/372 (20%), Positives = 148/372 (39%), Gaps = 63/372 (16%)

Query: 534 VREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             ED++VTV+  GYVKR  L  Y A             +D D +      +T   +L F+
Sbjct: 3   ASEDVIVTVTKDGYVKRTSLRSYAASNG-----QDFAXKDTDRLLAXLEXNTKDVLLLFT 57

Query: 594 SLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATK 653
           + G      V  LP    +  G+ + NI+ +++ E I   +P  + E    N Y +F T+
Sbjct: 58  NKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFEL---NGYFLFVTR 114

Query: 654 HGNVRRNKLSDFIQINRSGKIA-MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISA 712
           +G V++ +L  +     S  +  + L + D+++ V      N++ L T  G  + F  S 
Sbjct: 115 NGXVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGXNELFLVTHNGYALWFDESE 174

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +    G  + GV+G +L +GD ++S  ++   D                           
Sbjct: 175 V-SIVGVRAAGVKGXNLKEGDYIVSGQLITSKD--------------------------- 206

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
                                    + I+  +++G  K+    +F  + R+ +G+     
Sbjct: 207 -------------------------ESIVVATQRGAVKKXKLTEFEKATRAKRGVVILRE 241

Query: 833 SKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            K N    +       D+D I L ++K  +  + V +IR + R + G  +    ++ RV+
Sbjct: 242 LKANPH-RISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVI 300

Query: 893 SVERIRESEIVD 904
           SV ++   +  +
Sbjct: 301 SVWKVEAEDKTE 312


>gi|40781641|gb|AAR89826.1| gyrase [Enterococcus gallinarum]
          Length = 80

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 49/80 (61%), Positives = 63/80 (78%)

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDGD  AA RYTE R+ K A 
Sbjct: 1   VMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAM 60

Query: 141 FLLDDLGKDTVDFRPNYDGS 160
            +L D+ KDTVDF+ NYD +
Sbjct: 61  EMLRDINKDTVDFQSNYDDT 80


>gi|291234700|ref|XP_002737286.1| PREDICTED: DNA topoisomerase II, beta isozyme-like [Saccoglossus
            kowalevskii]
          Length = 1649

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 100/429 (23%), Positives = 167/429 (38%), Gaps = 47/429 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +     +K+ VK A+++G V     YH HG A++   
Sbjct: 727  ERSIPSMVDGLKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEHSAYH-HGEASLMGT 782

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L+         
Sbjct: 783  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAASPRYIFTMLSPLARLLMPASDD---- 838

Query: 153  FRPN----YDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
              PN    +D + + EP   C   P VLVNG  GI  G +T I  +++ E+V     +ID
Sbjct: 839  --PNLTQLFDDNQRIEPEWYCPIIPMVLVNGAEGIGTGWSTKIANYDVREIVANIRLMID 896

Query: 208  NPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
              +            P  P+     G      A          R     E    D   + 
Sbjct: 897  GEE----------PLPMLPSYKGYKGAIEEIEAN---------RYACSGEIAIVDNNTLE 937

Query: 268  VTEIPY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
            +TE+P     QV K  +LE +     EK    I D ++       ++V+++         
Sbjct: 938  ITELPVRVWTQVYKETVLEPMLHG-SEKVQPLITDYKEYHTDTTVKIVVKMSDEKLLKAE 996

Query: 324  LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV-VRRTKYLLNKARD 382
               L++   LQ+  SV    L            I++    F E  +   R +    +   
Sbjct: 997  EQGLHKVFKLQNTISVTNSVLFDSHGCIKKYDDIMEILKEFFELRLERYRIRKEYLEGLL 1056

Query: 383  RAHVLVGLAIAVANLDEVV-RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
             A        A   L+++  +I+  + +       L+QR +++  IK   +  + ++   
Sbjct: 1057 AAESNKLDNQARFILEKIENKIVIENKSKRDLISMLVQRGYDSDPIKAWKESQNRNNEDE 1116

Query: 442  GSDGTMYLS 450
             SD     S
Sbjct: 1117 DSDTDSMYS 1125


>gi|303388894|ref|XP_003072680.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
 gi|303301822|gb|ADM11320.1| DNA topoisomerase II [Encephalitozoon intestinalis ATCC 50506]
          Length = 1141

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/448 (20%), Positives = 164/448 (36%), Gaps = 56/448 (12%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             +SI+D +    + +++   + R+IP L DGLKP  R+++F   +  +      +K A++
Sbjct: 642  QISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVMFSCFKRNLRSE---IKVAQL 697

Query: 78   SGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
             G V  +  YH HG  ++   +  +AQD+  S  + L+   G FGS    G   A+ RY 
Sbjct: 698  VGYVSEQSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGKDAASPRYI 756

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L      + ++     + +  N D    EP       P VLVNG  GI  G +T+IP
Sbjct: 757  FTSLSPLTRLIFNENDDAILSY-LNDDNLSIEPEFYVPIIPMVLVNGAEGIGTGWSTSIP 815

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI--V 249
              N  +VV+    +I   D                          +   Y   RG+I  V
Sbjct: 816  NFNPVDVVENIRRLIRGEDP-----------------------VEMIPYYRNFRGTIEKV 852

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
              G   +         + ++E+P         E +  LV+   + D  +   E   +   
Sbjct: 853  GEGKYQVSGIYEGDMDLEISELPVGTWTLNYKEFLESLVQAGVVKDFKEYHTE---KTVS 909

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
              ++L         ++ L   T++     V     N    +  T   ILK F   R    
Sbjct: 910  FSVKLS------KSISNLKLSTTITINNMVCFDE-NLGIKKYSTPQEILKEFYDVRLRYY 962

Query: 370  VRRTKYLLNKARDR---AHVLVGLAIAVANLDEVV------RIIRFSPNPETARRELMQR 420
              R + +L   ++        V     V+  + V+       +I    +   AR +  + 
Sbjct: 963  SIRKENMLKVMKEELVKLENKVRFIKEVSTGELVISRRRKGEVIFDLESRRYARVDDYEY 1022

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMY 448
              + S +   ++ I+  +         Y
Sbjct: 1023 LLSMSILSLTVERIEKLNNEHAKKLEEY 1050


>gi|295668785|ref|XP_002794941.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
 gi|226285634|gb|EEH41200.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb01]
          Length = 1582

 Score =  176 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 143/384 (37%), Gaps = 32/384 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V  +   +K   ++G V  M  Y  HG+ ++   +
Sbjct: 701  RSIPSVVDGLKPGQRKVLYTCFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDVSLQQTI 756

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  +     +  + +
Sbjct: 757  VGLAQTFVGSNNVNCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRIFHPADEPLLTY 816

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P VL+NG  GI  G +T+IP +N  ++V     ++D      
Sbjct: 817  NVD-DGHTIEPEIYVPVVPLVLINGADGIGTGWSTSIPNYNPEDIVANLKCLMDGE---- 871

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P      G TG     + G       G            ++ +TE+P 
Sbjct: 872  ---------PLVPMQPWFRGFTG--EVVSLGGERYKFSGRIS----QVGENEVEITELPI 916

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +       +++ E+++ +++     D +D +       VI+L    +A  I   L     
Sbjct: 917  RCWTQDFKDRLEEIIKAEKVPSFIKDYKDYNTHTKVHFVIQLDEKHAAKAIAEGLEEKFK 976

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
            L    + + +     +               F    +    K  +         +  L  
Sbjct: 977  LSKTIATSNLVAFDPEGRITKYDSPEDILREFYSVRIKFYEKRKMPLWSLTQERVEKLRR 1036

Query: 393  AVANLD-EVVRIIRFSPNPETARR 415
             +   + EV  +I+ S      + 
Sbjct: 1037 QIGEKEIEVDNLIKLSKEDIWRKD 1060


>gi|72007795|ref|XP_783546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
 gi|115967910|ref|XP_001184546.1| PREDICTED: similar to DNA topoisomeraseII_beta [Strongylocentrotus
            purpuratus]
          Length = 1448

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/422 (19%), Positives = 160/422 (37%), Gaps = 46/422 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF   +   ++ KK +K A+++G V  +  YH HG  ++   
Sbjct: 738  ERSIPSMVDGLKPGQRKVLFTCFK---KYEKKEIKVAQMAGAVSELSAYH-HGEQSLMST 793

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY   +L   A  +        + 
Sbjct: 794  IINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDAASARYIFTQLSPLARLVFPHHDDPLLS 853

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +   YD + + EP       P VL+NG  GI  G +T I  +++ EVV     ++   + 
Sbjct: 854  YM--YDDNQRIEPEFYAPIIPMVLINGSEGIGTGWSTRICNYDIREVVANVRRLLAGDE- 910

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P+     G                 R   + E +  D   + +TE+
Sbjct: 911  ---------PVPMLPSYKNFKGTIE---------EFEPNRFAVNGEISVVDDNSVEITEL 952

Query: 272  PYQVNKAAMLEKIAELVR---EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +V      E + E +    +K    I+D ++       + V+++            L+
Sbjct: 953  PIRVWTQNYKESVLENMVYGTDKVKPSISDYKEYHTDTTVKFVVKMNEDRLLRGEEEGLH 1012

Query: 329  RYTSLQSLF-SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            +   LQ+ F   N++ L            + +    F       R +    +      +L
Sbjct: 1013 KMFKLQTTFSQANLMVLYDRHGCIRRYDNVEEILREF----FTLRMELYHKRKAYLEGIL 1068

Query: 388  VGLAIAVANLDEVV------RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
               +  + N    +      +++  + +  +   +L  R +++  +K   +    S    
Sbjct: 1069 EAESSKLNNQARFIMEKIDGKVVIENKSKSSMISQLTSRGYDSDPVKAWKEAQQKSVEEE 1128

Query: 442  GS 443
              
Sbjct: 1129 ED 1130


>gi|157167886|ref|XP_001656143.1| DNA topoisomerase/gyrase [Aedes aegypti]
 gi|108871009|gb|EAT35234.1| DNA topoisomerase/gyrase [Aedes aegypti]
          Length = 1300

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 163/418 (38%), Gaps = 51/418 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 715  RSIPCMVDGLKPGQRKVMFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQSLCGTI 770

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+   G FG+    G   A+ RY    L      +   L    +++
Sbjct: 771  VNLAQNYVGSNNINLLVPSGQFGTRLAGGKDSASPRYIFTMLSPLTRLIFHPLDDPLLEY 830

Query: 154  RPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  YD + + EP+  L    P VLVNG  GI  G +T IP HN  +++     +++  + 
Sbjct: 831  Q--YDDNQKIEPLWYLPI-IPMVLVNGTEGIGTGWSTKIPNHNPRDIISNLRRMLNGEEP 887

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG----DREQIV 267
             +                       +   Y   RG I   G             D ++I 
Sbjct: 888  KI-----------------------MHPWYKNFRGEIESVGHQRYLTVGNVSLLDNQKIE 924

Query: 268  VTEIPYQVNKAAMLEKIAE-LVR--EKRIVDIADLRDESDRQGYRVVIELKRGAS----- 319
            ++E+P         E   E L    +K+   I++ ++ +     R VI    G       
Sbjct: 925  ISELPIGTWTQTYKENTLEPLANGSDKQKAIISEYKEYNTDTTVRFVISFLPGEYDRIYA 984

Query: 320  ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             +   +++++ TS  S  S+N      Y         I   +   R E   +R  YL   
Sbjct: 985  EEGGFHRVFKLTSSISTSSMNAFDDKSYLKRYDHANDIFHEYYKLRIEYYGKRKAYLEGM 1044

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDS 437
             +  A  L   A  +    +   ++      +    EL++R + A  +K+    +   
Sbjct: 1045 LQAEADRLTDQARFIMEKCDRTLVVENKK-RKVMIDELIKRGYRADPVKEWKRKVALD 1101


>gi|259493809|gb|ACW82745.1| DNA gyrase subunit A [Vibrio cholerae]
          Length = 80

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 62/78 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 3   LGNDWNKAYKKSARVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 62

Query: 123 DPPAAERYTECRLQKAAH 140
           D  AA RYTE R+ K AH
Sbjct: 63  DSAAAMRYTEVRMSKIAH 80


>gi|310831536|ref|YP_003970179.1| putative DNA topoisomerase IIA [Cafeteria roenbergensis virus BV-PW1]
          Length = 1101

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 96/458 (20%), Positives = 175/458 (38%), Gaps = 58/458 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP L DG KP  R+I +G    G+E ++  VK A+++G V  +  YH HG A++  A+
Sbjct: 672  RSIPSLVDGFKPSQRKIFYGANLRGLEKDQ--VKVAQLAGFVSDRVAYH-HGEASLMGAI 728

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+E +G FGS  + G   A+ RY   +L+K A  +        +++
Sbjct: 729  IGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYIWTKLEKVAGLIFRKEDNPILNY 788

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              N DG   EP   L    P +LVNG  GI  G +T+IP ++  E+++    +I      
Sbjct: 789  I-NDDGLMVEPEFYLPI-IPMILVNGATGIGTGFSTSIPCYHPQELIEVLKKLIKGEK-- 844

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                    I   Y    G +  +  +   + SG         I 
Sbjct: 845  ---------------------YKKIHPYYHKFEGKLK-KLDTTSYQVSGTYHIDKKNNIV 882

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYT 331
             +           +   EK +    +  +  ++    +++I LK       +  +L +  
Sbjct: 883  VEELPVGEWTTNYKQFLEKMLDTDTNFTNYDNNSTDEKILITLKFKNIPTKLDEKL-KMN 941

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
               +L +++     G+  +   +  I+  F   R E    R KYLL              
Sbjct: 942  KKINLTNLHAYTEKGHIQKFKNIDEIINNFYYVRLEGYYNRKKYLL----------EIYK 991

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
              +  +   V+ I          +E++ ++   ++ K LI   D  +      G     E
Sbjct: 992  HQMDIMKYKVKFI----------KEIINKTLIINNKKKLIIEQDLETKKYPKMGKNLKDE 1041

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +    +L + L  LT    +++  +            +
Sbjct: 1042 INYDYLLGMNLYSLTKEKIEELEKQKIEKEEIYTNLKN 1079


>gi|219121760|ref|XP_002181228.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407214|gb|EEC47151.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1143

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/485 (19%), Positives = 174/485 (35%), Gaps = 38/485 (7%)

Query: 22   TDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV 81
            ++ +   Y+ ++ +    R+IP L DG KP  R+ILF   +  +   K  +K A+++G V
Sbjct: 668  SEFINREYILFSKSD-NERSIPHLLDGFKPSQRKILFACFKRKL---KGEIKVAQLTGYV 723

Query: 82   M--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRL 135
                 YH HG A++   +  MAQ++  S  + L+   G FG+  + G   A+ RY   +L
Sbjct: 724  AEHSAYH-HGEASLQATIVNMAQNFCGSNNINLLTPSGQFGTRRMGGKDAASARYIFTKL 782

Query: 136  QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
            +     +      + + +  N DG   EP       P +LVNG  GI  G +T++  +N 
Sbjct: 783  EPITRAIFHPDDDELLSYI-NDDGVTVEPEYYVPVIPMILVNGADGIGTGWSTSVNNYNP 841

Query: 196  GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             E+V      I   D    A          P  +   G     ++ +   GS  + G   
Sbjct: 842  REIVRNLRRKIAGEDFVAMA----------PFYSGFKGEIIPVDSNSRRSGSYDMLGKVE 891

Query: 256  IEKTSGDREQIVVTEIP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVI 312
                  +   I+++E+P   +  +  A LE +     +K++ +I D  +          I
Sbjct: 892  ----RINDTTIIISELPVRKWTQDYKAFLEIMLTGDGKKKLPEIKDFTENHTETTVSFTI 947

Query: 313  ELKRGASADVILNQ--LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV 370
              ++    +    +  L     L    S + + L   +              AF +  + 
Sbjct: 948  IAEKEKIDEFEKEKAGLMGKFKLTGSLSTSNMTLFDERGRITRFEDPESIMNAFYDIRLD 1007

Query: 371  RRTKYLLNKARDRAHVLVGLAIAVANLDEV--VRIIRFSPNPETARRELMQRSWNASDIK 428
               K      +        L+     ++EV  V ++  +   +    EL  R +      
Sbjct: 1008 FYDKRKRLLVKKLKEEQRKLSNKARFVEEVCRVELVVNNRKRQDILHELRNRGYETFGAD 1067

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                   DS     S     ++E Q+ A L      L G+    +  E            
Sbjct: 1068 ARSKETSDSDGEEDS-----INESQSDAELARGYEYLLGMKIWSLTFEKAEELRRKLGEK 1122

Query: 489  DILSS 493
                +
Sbjct: 1123 TTELN 1127


>gi|159484508|ref|XP_001700298.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
 gi|158272465|gb|EDO98265.1| DNA topoisomerase II [Chlamydomonas reinhardtii]
          Length = 1167

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 93/481 (19%), Positives = 166/481 (34%), Gaps = 44/481 (9%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+IL+   +  ++ +   +K A++S  V     YH HG  ++  
Sbjct: 697  LDRSIPSMLDGLKPGQRKILYACFKRNLKKD---IKVAQLSAYVAEHSAYH-HGEGSLAS 752

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  +AQD+  S  + L+   G FG+    G   A+ RY   RL      L ++     +
Sbjct: 753  TIVNLAQDFVGSNNVNLLHPSGQFGTRLQGGKDAASARYIYTRLAALTRHLFNENDDQLL 812

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
             +  N +G   EP   +    P VL+NG  GI  G +T IP +N  +++     +++   
Sbjct: 813  TY-LNEEGQSIEPEWYMPI-LPTVLINGADGIGTGWSTTIPNYNPRDIMANLRRLLEGEA 870

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             +             P      G       + +G  S V+ G             I +TE
Sbjct: 871  QE----------AMHPWYRGFNGNIAEAATHKSGSRSYVVSGTVT----QTGPNTIEITE 916

Query: 271  IPYQVNKAAMLEKIAEL------VREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +P +       E +  L      VR      IAD  +         V+EL  G   +++ 
Sbjct: 917  LPIRKWTQDYKEFLETLLRPTEKVRRDEAPIIADYSEHHSDSNVHFVVELLPGKMEELLA 976

Query: 325  NQ--LYRYTSLQSLFSVNMVALNGYKPERFTL---IGILKAFVAFREEVVVRRTKYLLNK 379
            +   L     L +  + + + L  +            I+  F   R +   +R   +L  
Sbjct: 977  SPGGLDGKFKLTTKIATSNMMLFDHSGMIKHYSSPEMIVAEFYELRLDYYEKRRIAMLKV 1036

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
            A             +  + E    +R     +  R    Q           + +      
Sbjct: 1037 ASLDQKRADNRIRFILAVVEGRLEVRGRKRADLERDLEAQGFDRLGKAGAKVKVRITEVA 1096

Query: 440  TIGSDGTMYLSEVQT------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              G +G    + V          +L + +  LT      ++ E       ++    I   
Sbjct: 1097 EDGEEGEGGEAAVTASNGASYDYLLSMSIYNLTREKIAKLQEEAAKAKERVEYLCSITGR 1156

Query: 494  R 494
             
Sbjct: 1157 D 1157


>gi|71018835|ref|XP_759648.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
 gi|46099406|gb|EAK84639.1| hypothetical protein UM03501.1 [Ustilago maydis 521]
          Length = 1518

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/521 (19%), Positives = 200/521 (38%), Gaps = 47/521 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +   D +    + +++   L R+IP   DGLKP  R++++ M           +
Sbjct: 759  DHNTDRIPYADFINKELILFSMADNL-RSIPSAIDGLKPGQRKVMYVMFDRKSNSE---L 814

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   + G V+G+  YH HG AA+   +  +AQ++  S  + L+E +G FG+    G   A
Sbjct: 815  KVNTLVGNVLGQAAYH-HGEAALSMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAA 873

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVG 185
            + RY    L K A  L        +D+  + DG   EP   +    P VL+NG  GI  G
Sbjct: 874  SGRYIFTALPKIARALFPATDDALLDYLED-DGQKVEPHWYIPV-VPQVLLNGAEGIGTG 931

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T++P +N  E+V      +   D+              P      G  G    +  GR
Sbjct: 932  WSTSVPNYNPHEIVANLRRRMAGEDV-------------VPMKPWYRGFNGDVEEFGPGR 978

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI-AELVREKRIVD-IADLRDES 303
                I G               +TE+P +   +   E +   +V   +I   I D ++  
Sbjct: 979  --FKISGRVTQIDEKTYE----ITELPIRTWTSNYKELLEERIVSSDKIPATIKDYKEYH 1032

Query: 304  DRQGYRVVIELKRGASADVI---LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                   ++EL     A++    +   ++ +   S  ++ +   +G   +  +   IL+ 
Sbjct: 1033 TESTVNFIVELTAKGQAEIADKGVEAFFKLSCQISTTNMVLFDQDGKIKKYTSAEEILEE 1092

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELM 418
            F   R     +R +YL+++ +    +   L+     +  ++  +++  +        EL 
Sbjct: 1093 FYLLRLSYYQKRKEYLVDQLKL---MYDKLSNQARFVQMIISRQLVVSNRKRADIVAELR 1149

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            Q+ +     +    +  +       D     ++     +L + +  LT    D +  E +
Sbjct: 1150 QKDFRPFPKQGKASIAAEPEDDEAIDDEDISADSDFDYLLNMAIYNLTKEKVDKLLKERD 1209

Query: 479  SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRR 517
                E+K  + I  S   L      + + + +E+  +  RR
Sbjct: 1210 HKEEELK--ILIGRSPQNLWDEDLTKFIELWEEMLAEDDRR 1248


>gi|195484462|ref|XP_002090705.1| GE12650 [Drosophila yakuba]
 gi|194176806|gb|EDW90417.1| GE12650 [Drosophila yakuba]
          Length = 1441

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/415 (24%), Positives = 169/415 (40%), Gaps = 41/415 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  +  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++ + DG   EP   L    P VLVNG  GI  G +T I  HN  E+++    +I+  + 
Sbjct: 808  YQVD-DGQKIEPQWYLPI-IPMVLVNGAEGIGTGWSTKIANHNPREIMNNLRKMINGEEP 865

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             +            P      GR    +      G  V  G   I        ++ +TE+
Sbjct: 866  KVMH----------PWYKNFTGRMEYVSD-----GRYVQTGNIQILP----GNRVEITEL 906

Query: 272  PYQVNKAAMLEKIAE-LVR--EKRIVDIADLRDESDRQGYRVVIELKRGAS-----ADVI 323
            P  V      E + E L    EK    ++D R+       R VI    G        +  
Sbjct: 907  PVGVWTQNYKENVLEPLANGTEKVKAIVSDYREYHTDTTVRFVITFATGEFERIQAEEGG 966

Query: 324  LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             +++++ T+  S   ++    N       T + ILK F   R E   RR  +L+ +   +
Sbjct: 967  FHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAVDILKEFYQLRREYYARRKDFLVGQLTAQ 1026

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            A  L   A  +    E  +++  +   +    EL++R +    +K+    I    
Sbjct: 1027 ADRLSDQARFILEKCEK-KLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMED 1080


>gi|85707862|ref|ZP_01038928.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
 gi|85689396|gb|EAQ29399.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1]
          Length = 156

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 1   MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
           M E   + D +E   I        +   YL YA++ I  R++PDLRDGLKPVHRR+L+ M
Sbjct: 1   MAEPTTTDDSDEFDTIVDAPFDAALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTM 60

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQ 102
            Q+ ++ +  + K AR+ GEV+GKYHPHG+ A YDA+ R+AQ
Sbjct: 61  RQLKLDPSSGFKKSARVVGEVIGKYHPHGDTAAYDAMVRLAQ 102


>gi|310831315|ref|YP_003969958.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
 gi|309386499|gb|ADO67359.1| putative DNA topoisomerase IIA precursor [Cafeteria roenbergensis
            virus BV-PW1]
          Length = 1488

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/458 (20%), Positives = 175/458 (38%), Gaps = 58/458 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP L DG KP  R+I +G    G+E ++  VK A+++G V  +  YH HG A++  A+
Sbjct: 1059 RSIPSLVDGFKPSQRKIFYGANLRGLEKDQ--VKVAQLAGFVSDRVAYH-HGEASLMGAI 1115

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+E +G FGS  + G   A+ RY   +L+K A  +        +++
Sbjct: 1116 IGMAQNFVGSNNVNLLEPKGQFGSRVMGGKDSASPRYIWTKLEKVAGLIFRKEDNPILNY 1175

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              N DG   EP   L    P +LVNG  GI  G +T+IP ++  E+++    +I      
Sbjct: 1176 I-NDDGLMVEPEFYLPI-IPMILVNGATGIGTGFSTSIPCYHPQELIEVLKKLIKGEK-- 1231

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                    I   Y    G +  +  +   + SG         I 
Sbjct: 1232 ---------------------YKKIHPYYHKFEGKLK-KLDTTSYQVSGTYHIDKKNNIV 1269

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDE-SDRQGYRVVIELKRGASADVILNQLYRYT 331
             +           +   EK +    +  +  ++    +++I LK       +  +L +  
Sbjct: 1270 VEELPVGEWTTNYKQFLEKMLDTDTNFTNYDNNSTDEKILITLKFKNIPTKLDEKL-KMN 1328

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
               +L +++     G+  +   +  I+  F   R E    R KYLL              
Sbjct: 1329 KKINLTNLHAYTEKGHIQKFKNIDEIINNFYYVRLEGYYNRKKYLL----------EIYK 1378

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
              +  +   V+ I          +E++ ++   ++ K LI   D  +      G     E
Sbjct: 1379 HQMDIMKYKVKFI----------KEIINKTLIINNKKKLIIEQDLETKKYPKMGKNLKDE 1428

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
            +    +L + L  LT    +++  +            +
Sbjct: 1429 INYDYLLGMNLYSLTKEKIEELEKQKIEKEEIYTNLKN 1466


>gi|313621653|gb|EFR92449.1| DNA gyrase subunit A [Listeria innocua FSL S4-378]
          Length = 327

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/296 (29%), Positives = 147/296 (49%), Gaps = 6/296 (2%)

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR+PLS YR+QRRGG+G  G+   ++DFV  L   STH ++LFF++ G VY+ K + +P 
Sbjct: 2   KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKVYRSKGYEVPE 61

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
               A+G  +IN+L +   E++  ++   E     ++ Y+ F TKHG V+R  LS F +I
Sbjct: 62  YGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDSYLFFTTKHGVVKRTTLSQFAKI 118

Query: 669 NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGIS 728
            +SG  A++L   DE++SV+      ++++ TK GQ + FP   IRV  GR + GVRGI 
Sbjct: 119 RQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVM-GRTAAGVRGIR 177

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + D+VI M ++   +             +   +    +   +       + +      
Sbjct: 178 LREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKNGNLVA 237

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
                  ++  ++TVS  G   R        + RS  G++   + +  ++  +  V
Sbjct: 238 MKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKV 291



 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 16/260 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQI--NRSGKIAMKL--DSRDEILSVET----CTQENDILLT 699
           ++F T  G V R+K  +  +      G   + L      E ++        T ++ +  T
Sbjct: 42  LLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFT 101

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           TK G   R  +S       R S G+R + L + D++IS   V   D   +  I      S
Sbjct: 102 TKHGVVKRTTLSQFAKI--RQS-GLRAVELRENDELIS---VQMTDGSKNMIIATKHGQS 155

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                 +      T+            E    E+   ++ +L V+EKG+GK+T +  + +
Sbjct: 156 IYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPL 215

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            NR G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  G
Sbjct: 216 RNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMG 273

Query: 880 VVIFSTAKDERVVSVERIRE 899
           V +    +DE+V +V ++ +
Sbjct: 274 VKLIRLDEDEKVATVAKVPK 293



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 102/249 (40%), Gaps = 17/249 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VKR  LS +   R+ G     V +R+ D +  + +     +++  
Sbjct: 92  FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSG--LRAVELRENDELISVQMTDGSKNMIIA 149

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G         + +    A   A +  + L + + +  +          ++  V+  T
Sbjct: 150 TKHGQSIYFPEENIRVMGRTA---AGVRGIRLREDDEVIGMEVLE------DDEKVLVVT 200

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + G  ++   S +  +   G + +K     +    +++++T T E D++L T  G  +RF
Sbjct: 201 EKGYGKQTPASQYP-LRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRF 259

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            I  +    GR+++GV+ I L + ++V ++A V   + + +      + +  Q    S +
Sbjct: 260 EIDTV-SQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLITQVPDESFE 318

Query: 769 TEEITSLKN 777
               + ++ 
Sbjct: 319 DAPGSDIEE 327



 Score = 69.1 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
           KR     +R   R G+GI+     + + +  LVA    + +D ++  ++ G + R    E
Sbjct: 2   KRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVAT---STHDTLLFFTNTGKVYRSKGYE 58

Query: 870 IRIASRATKGVVIFST---AKDERVVSVERIRESEIVDEA 906
           +    R  KG+ I +       E+V +V  I  SE  D++
Sbjct: 59  VPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDDS 96


>gi|145353138|ref|XP_001420882.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144581118|gb|ABO99175.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1292

 Score =  176 bits (446), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/470 (20%), Positives = 169/470 (35%), Gaps = 43/470 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  ++ +   +K A++SG V     YH HG A++   +
Sbjct: 696  RSIPSMVDGFKPSQRKVLFSCFKRKLKSD---IKVAQLSGYVSEHSAYH-HGEASLAMTI 751

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  S  + L+   G FG+    G   A+ RY   RL +    +  +      D 
Sbjct: 752  VNLAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIFTRLHEVCRAMFPECD----DA 807

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              NY   DG   EP       P VLVNG  GI  G +T+IP  N  +++     V++   
Sbjct: 808  LLNYLDEDGQRIEPDYYYPVLPLVLVNGAEGIGTGWSTSIPNFNPRDLIANIRLVLEGES 867

Query: 211  IDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                       +G              I      G     + G  +I     D   + VT
Sbjct: 868  PVQMHPWYRHFKGS-------------ITEELVKGETRYNVTGSYNI----RDECTLEVT 910

Query: 270  EIPYQVNKAAMLEKIAELVREKR---IVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            E+P +   +   E + E++  K       I D ++         VI +     A    + 
Sbjct: 911  ELPLRSWTSDYKEFLEEMLVPKTKTAKPFITDYKEYHTDSTVHFVITMPPENLAAAQASG 970

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
            + +   L +  ++  + L   +         +    AF    +   ++      R     
Sbjct: 971  IEKKFKLSTKLNITNMHLFNEQGVITKYSSPVAILEAFVPLRLKAYSQRREMLIRLAESQ 1030

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
            L  L+     +  ++ ++  S      +++ +     A     L      S   +  DG 
Sbjct: 1031 LKRLS---NKMRFILAVVDGSLVVNRKKKQELIAELEALCYDRLPKTDKGSVAELDEDGE 1087

Query: 447  MYLSEV--QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
               ++V      +L + L  LT    D++  E  +   E+ E        
Sbjct: 1088 FIANDVAGSYDYLLGMPLWNLTLEKVDELCAEKEAKEAEVAELHKTTEKD 1137


>gi|304368196|gb|ADM26747.1| ParC [Acinetobacter baumannii]
          Length = 98

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 48/99 (48%), Positives = 67/99 (67%), Gaps = 3/99 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDYACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
            D DP   AA RYTE +L   +  LL +LG+ T +++ N
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDN 98


>gi|83775666|dbj|BAE65786.1| unnamed protein product [Aspergillus oryzae]
          Length = 1437

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/434 (19%), Positives = 170/434 (39%), Gaps = 43/434 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 667  DHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 722

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 723  KVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCA 781

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G 
Sbjct: 782  SARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGW 840

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  ++VD    ++D  +            G     G      +GI        
Sbjct: 841  SSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRGFTGEVTDVGGDRFKFSGIIK------ 894

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 895  --------------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 940

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAF 361
                  VI+L        +   L     L     + N+VA +      +  T+  ILK F
Sbjct: 941  HTKVHFVIQLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEF 1000

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
              +R +   +R +Y L++ +        L         V  II         ++ ++ + 
Sbjct: 1001 YTYRLKFYEKRKQYQLSQLQKE------LDKLSNQARFVQEIIDGKLVVSKKKKNVLVQE 1054

Query: 422  WNASDIKDLIDLID 435
                  K    + +
Sbjct: 1055 LKDKGYKAFPKVAE 1068


>gi|156848882|ref|XP_001647322.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156118007|gb|EDO19464.1| hypothetical protein Kpol_1002p113 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1404

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/440 (19%), Positives = 166/440 (37%), Gaps = 46/440 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  + ++ I+D +    + +++   + R+IP + DG KP  R++LF   ++ + +    +
Sbjct: 663  DPNLDAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLTYE---I 718

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++ +V  K  YH HG  ++   +  +AQ++  +  + L++  G+FGS    G   A
Sbjct: 719  KVGTLAAKVSEKTSYH-HGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDAA 777

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGI 182
            A RY   +L K A  +         D   NY   DGS  EP   L    P VLVNG  GI
Sbjct: 778  AARYIHTQLNKVARSIFHPSD----DALFNYLEDDGSPIEPEWYLPI-IPMVLVNGAEGI 832

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +TNIP+ N  +++     ++++  +D   +                G  G+     
Sbjct: 833  GTGWSTNIPSFNPLDIIKNIRHLMNDEVMD--EMYPWY-----------RGWKGVVEKVD 879

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLR 300
                   + G             + +TE+P +   +++ E +   +   EK    I D+ 
Sbjct: 880  D--HRFRLYGKVE----QVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDM- 932

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
            +E      R +I L     A      +Y    L S  ++  +       +      +L  
Sbjct: 933  EEQHTNDIRFIITLTPEEMAKTKKIGVYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDI 992

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
               F       R ++   +    +  L      ++   + +++I       + + + +  
Sbjct: 993  LTEFYYV----RLEFYQKRKDYMSQKLQWTVEKISFQVKFLKMIIDKEYTVSNKAKKIIM 1048

Query: 421  SWNASDIKDLIDLIDDSSYT 440
                      I+      Y 
Sbjct: 1049 KELEGFGFPRINKDGKPHYG 1068


>gi|324500526|gb|ADY40245.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1388

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 163/417 (39%), Gaps = 39/417 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG  ++   
Sbjct: 766  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEQSLMST 821

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   +  + + 
Sbjct: 822  IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSVDDNVLR 881

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   ++ + + EP   C   P VLVNG  GI    +T +P +N  E+VD    +I   D 
Sbjct: 882  FL--FEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVDNIRRLIRGED- 938

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G     +           R     E      + + +TE+
Sbjct: 939  ---------PKPMVPWFKNFRGTIEQLDDQ---------RFACSGEIAILRDDTLEITEL 980

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +V      E + E +    +K+   I D ++       R VI++      D  +  L+
Sbjct: 981  PIRVWTQNYKESVLEPLLEGSDKQPALIQDFKEYHTDTTVRFVIKMSAQKLRDAEMEGLH 1040

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + + + L        +   +  I K F   R++  + R  +     R ++ 
Sbjct: 1041 KVFKLQTAINTSSMVLFDAAGCLRKFRNVEEICKEFFETRKKKYIERKAFQEGMLRAQSE 1100

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             L   A  +    +   +I           +L+++ ++   +K   +L       + 
Sbjct: 1101 RLSNQARFILAKIKGEILIENKRKVAIV-EQLVKKGFDPDPVKKWKELQRRKELEMT 1156


>gi|328353447|emb|CCA39845.1| DNA topoisomerase II [Pichia pastoris CBS 7435]
          Length = 1312

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 48/399 (12%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            + I+D +    + +++   + R+IP + DG KP  R+IL+G  +  +      +K ++++
Sbjct: 735  IPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLRSE---IKVSQLA 790

Query: 79   GEVMGK---YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            G  +G+   YH HG+ ++  ++  +AQD+  S  L L++  G FGS    G   +A RY 
Sbjct: 791  GY-IGEHSAYH-HGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGGKDASAARYI 848

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRP--NY---DGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
               L K    +        VD  P  NY   D    EP   L    P +L+NG  GI  G
Sbjct: 849  FTDLSKITRKIF------HVDDNPLLNYLQDDEQTVEPEWYLPI-VPMLLINGSEGIGTG 901

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP  N  ++V     ++D  +++   ++               G  G         
Sbjct: 902  WSTNIPPFNPVDIVANIRRLMDGQEME--EMIPWY-----------RGWNGSIT--KISA 946

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDES 303
                + G         D E I +TEIP +     M E +   +   EK+   I D+ +E 
Sbjct: 947  DKFRMEGNIE----QIDDETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM-EEQ 1001

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                 + VI L +      +   L     L +  +V  +       +      + +    
Sbjct: 1002 HGMDLKFVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEIIED 1061

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            +    +    +   + A    + L  ++     +  ++ 
Sbjct: 1062 YYHVRLDFYQRRKDHLAEVLGNQLEKISSQARFVKMIIE 1100


>gi|221060064|ref|XP_002260677.1| DNA topoisomerase II [Plasmodium knowlesi strain H]
 gi|193810751|emb|CAQ42649.1| DNA topoisomerase II, putative [Plasmodium knowlesi strain H]
          Length = 1506

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/495 (17%), Positives = 173/495 (34%), Gaps = 59/495 (11%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +   K   K A++ G +     YH HG +++  
Sbjct: 735  TERSIPNIMDGWKPGQRKVLYGCFKRNL---KNECKVAQLVGYIAEHSAYH-HGESSLQQ 790

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L      + ++     +
Sbjct: 791  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASCTRSIFNEYDDPIL 850

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++     I+    
Sbjct: 851  KY-LNEEGQKIEPKYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIIENIKRYIN---- 905

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G +  E        D E + 
Sbjct: 906  ---------KEPLIP----------MIPWYKDFKGRIESNGKTGFETIGIIRKIDDETLE 946

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            + E+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 947  INELPIKKWTQDYKEFLEELLTDEKNQLILDYIDNSSHEEICFTIKMDPAKLRKAEEEGL 1006

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             +   L+S  +   + L  Y  +       L     F      +R     N+       L
Sbjct: 1007 EKVFKLKSTLTTTNMTLFDYNLKLQKYATELDILKEFCF----QRLNAYENRKSYLIAKL 1062

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQR---------------SWNASDIKDLID 432
                  ++N  + +  I  +      +++ +                      +I +   
Sbjct: 1063 EKEKKIISNKSKFILAIVNNELVVNKKKKKVLVEELYRKGYDPYKDINKIKKEEIFEQEL 1122

Query: 433  LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
            L    +     +    +S      +L + +  LT    +++  +      E++   +I  
Sbjct: 1123 LEAADNPEDNEEIIAGISVKDYDYLLSMPIFSLTLEKVEELIAQHKEKEKELEILRNITV 1182

Query: 493  SRSRLLGIIKQELLS 507
                +     +++  
Sbjct: 1183 --ETMWLKDIEKVEE 1195


>gi|65431837|gb|AAY42595.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 80

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 56/80 (70%)

Query: 46  RDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
           RDGLKPVHRR+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WS
Sbjct: 1   RDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYYTLVRMAQPWS 60

Query: 106 LRLLLIEGQGNFGSVDGDPP 125
           LR  L++GQGNFGS   DPP
Sbjct: 61  LRYPLVDGQGNFGSPGNDPP 80


>gi|18369808|dbj|BAB84099.1| DNA topoisomerase II [Aspergillus candidus]
          Length = 1096

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 149/359 (41%), Gaps = 36/359 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  V+ +   +K   ++G V  M  Y  HG+ ++   +
Sbjct: 677  RSIPSVVDGLKPGQRKVLYTCFKRNVKKD---MKVVELAGHVSGMTAYQ-HGDTSLQQTI 732

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ +  S  L  +E  GNFGS    G   A+ RY   RL   A  + +   +  + +
Sbjct: 733  VGLAQTFVGSNNLNCLEPSGNFGSRLQGGADCASARYIYTRLSPFARRVFNQQDEPLLTY 792

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G +++IP +N  ++V     ++D  + + 
Sbjct: 793  NED-DGEKIEPELYVPVVPLILINGADGIGTGWSSSIPNYNPEDIVANLKRMMDGEEPEP 851

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G   P G      +G                         + +++ +TE+P
Sbjct: 852  MQPWFRGFHGDVTPQGPDRYKFSGRIQ--------------------ELNEKEVEITELP 891

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ ++++ ++      D +D +       VI++        +   L    
Sbjct: 892  IRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQMDEKHLKSAVEEGLEEKF 951

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
             L     + N+VA +      +  T+  ILK F A R +   RR ++ L++ +     L
Sbjct: 952  KLSKTIATTNLVAFDPEGRITKYATVSDILKEFFAVRLKYYERRKQHQLSELQKDLDKL 1010


>gi|25006387|dbj|BAC24013.1| DNA topoisomerase II [Arthroderma otae]
          Length = 1087

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/404 (20%), Positives = 153/404 (37%), Gaps = 43/404 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 675  RSIPSVIDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHTTI 730

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 731  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHPADEPLLVN 790

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
              D     DG   EP       P +L+NG  GI  G +T+IP +N  +VV     ++   
Sbjct: 791  NTD-----DGKVIEPETYVPVVPLILINGADGIGTGWSTSIPNYNPEDVVANLKRLMAGE 845

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 846  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIT 885

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            E+P +       +++ E+++  ++     D +D +       +I++        +   L 
Sbjct: 886  ELPIRTWTQDFKDRLEEIIKADKVPSFIKDYKDYNTHTNVHFIIQMDEKHMKKALEEGLE 945

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L    + + +     +       T   IL+AF A R ++  RR ++LL++ + +  
Sbjct: 946  EKFKLIKPIATSNMVAFDAEGRITRYETPEDILQAFYAVRIKLYERRKQHLLSQLQSQLD 1005

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             L   A  V  + +   +I         +    +       + D
Sbjct: 1006 KLSNQARFVQMIIDGKLVISKKKKTILIQELKDKAFKPFPKVAD 1049


>gi|242062820|ref|XP_002452699.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
 gi|241932530|gb|EES05675.1| hypothetical protein SORBIDRAFT_04g030880 [Sorghum bicolor]
          Length = 1452

 Score =  175 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/477 (20%), Positives = 170/477 (35%), Gaps = 38/477 (7%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 688  LQRSIPSMVDGLKPGQRKILFCSFKRNFVKEA---KVAQFSGYVSEHSAYH-HGEQSLAS 743

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  + L+   G FG+    G   A+ RY   +L      +        +
Sbjct: 744  TIIGMAQNFVGSNNINLMFPGGQFGTRAQGGKDAASPRYIFTKLSHITRSIFPKDDDILL 803

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            ++  N DG   EP   +    P VLVNG  GI  G +T IP +N  ++V     ++ N +
Sbjct: 804  NY-LNEDGQSIEPTWYMPI-LPMVLVNGSEGIGTGWSTFIPNYNPRDIVANLRRLL-NEE 860

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              +         P  P      G             +  + G+  +     D  ++ +TE
Sbjct: 861  STV---------PMHPWYRGFKGSIEKTVNTKVVGSTYTVTGIIEV----VDNSRLRITE 907

Query: 271  IPYQVNKAAMLEKIAEL---VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E +  L     + ++  I D+  + D +   + I+L  G         L
Sbjct: 908  LPIRRWTGDYKEFLESLGPDKNKDKVPFIEDVTAQGDNEDIYIEIQLSEGNMNIAKEEGL 967

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             +   L +    + + L        +  T   IL+ F   R E  V+R + LL   +   
Sbjct: 968  VKKFKLTTTIGTSNMHLFDSNGKIRKYDTPEQILEEFFQLRLEFYVKRKEALLKNIKLEL 1027

Query: 385  HVLV---GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
              L         V + + +V   + +      R++            +            
Sbjct: 1028 KKLENKVRFIRCVVDNEIIVNNRKRADLFLELRQKNFDPFPKKKKRAEPAAAGALEEENE 1087

Query: 442  GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
             +             +L + +  LT     ++  E   L  +++E  +  +S   L 
Sbjct: 1088 ENPEAEAAEPSDYEYLLAMPIGTLTLEKIQELIAEKQKLVDDVEELKN--TSPKSLW 1142


>gi|326427380|gb|EGD72950.1| DNA topoisomerase II [Salpingoeca sp. ATCC 50818]
          Length = 1795

 Score =  175 bits (444), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 145/399 (36%), Gaps = 35/399 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +  +   K  +K A+++G V     YH HG  ++   +
Sbjct: 732  RSIPSIMDGLKPGQRKVLFSCFKRKL---KDEIKVAQLAGYVSEHSAYH-HGEMSLAGTI 787

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  L L+   G FG+    G   A+ RY    L   A  +        ++ 
Sbjct: 788  VGMAQRFVGSNNLNLLLPIGQFGTRLAGGKDAASSRYIFTSLSPLARKIFHLADDALLNH 847

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VLVNG  GI  G ++++P +N  ++V+  +A+I+  + D 
Sbjct: 848  LED-DGQTIEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQEPD- 905

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              L     G    TG +             G+    +RG         D   I ++E+P 
Sbjct: 906  -ELHPWYAG---FTGEIT----------PKGKDKYAVRGTLK----KLDETTIEISELPI 947

Query: 274  QVNKAAMLEKIAELVRE--KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +       E +  L  +  K+   I +          R V+ +            LY+  
Sbjct: 948  RTWTQPYKEFLEGLAADDGKKPPQILEFSQYHTDTTVRFVVSMTPEQMQAAETKGLYKVF 1007

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L+   S + + L   +       G+ +    F +  V  R                   
Sbjct: 1008 KLEGSISTSNMTLFDPQGRIKKYEGVQEILRDFFD--VRLRLYQKRKSLLADCMTSE-YK 1064

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
                 +  ++ +I  S      ++  + +   A      
Sbjct: 1065 KMDNKVRFILDVISGSLVISNRKKADILQELRAKGFAAF 1103


>gi|56269784|gb|AAH86970.1| Top2a protein [Danio rerio]
 gi|197247280|gb|AAI65253.1| Top2a protein [Danio rerio]
          Length = 1570

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/494 (19%), Positives = 188/494 (38%), Gaps = 45/494 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 711  ERSIPCMVDGLKPGQRKVVFCCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLMMT 766

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 767  IVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLK 826

Query: 153  FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +  NYD + + EP   +    P VL NGG GI  G A+ IP +++ E+++    +++  +
Sbjct: 827  Y--NYDDNLRVEPEWYMPI-IPLVLANGGEGIGTGWASRIPNYDVREIINNIHRMLNGEE 883

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                        P  P+     G           +   V  G    E    D   I +TE
Sbjct: 884  ----------PLPMLPSYKGFKGTID-----ELAKNQYVNNG----EVAIIDSTTIEITE 924

Query: 271  IPYQVNKAAMLEKIAELVREKRIV---DIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +P +       E + E++          I D ++       R V+++      +     L
Sbjct: 925  LPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGL 984

Query: 328  YRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            ++   LQ+L + N + L  +     +  ++  ILK F   R +  V R  +L+      +
Sbjct: 985  HKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGMLGAES 1044

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA---SDIKDLIDLIDDSSYTI 441
              L   A  +    +   +I   P  E  R        +    +         ++ +   
Sbjct: 1045 AKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPVKAWKDAQEKEEEEDAEDD 1104

Query: 442  GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
                    S      +L + +  LT   +D++  + ++   E+      + + + L    
Sbjct: 1105 DEKEKEDTSGPDYNYLLSMPMWYLTKEKKDELCKQRDAKMTELNTLK--MKAPADLWKED 1162

Query: 502  KQELLSVKDELDTP 515
                    + ++  
Sbjct: 1163 LAAFTEELERVEQK 1176


>gi|284027757|gb|ADB66703.1| ParC [Salmonella enterica subsp. enterica]
          Length = 86

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 60/84 (71%)

Query: 32  YAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNA 91
           Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    K+ K AR  G+V+GKYHPHG++
Sbjct: 2   YSMYVIIDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDS 61

Query: 92  AIYDALARMAQDWSLRLLLIEGQG 115
           A Y+A+  MA  +S R  L++G G
Sbjct: 62  AYYEAMVLMALPFSYRNPLVDGHG 85


>gi|324500558|gb|ADY40259.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1586

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 161/417 (38%), Gaps = 39/417 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG  ++   
Sbjct: 766  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEQSLMST 821

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   +  + + 
Sbjct: 822  IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSVDDNVLR 881

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   ++ + + EP   C   P VLVNG  GI    +T +P +N  E+VD    +I   D 
Sbjct: 882  FL--FEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVDNIRRLIRGED- 938

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G     +           R     E      + + +TE+
Sbjct: 939  ---------PKPMVPWFKNFRGTIEQLDDQ---------RFACSGEIAILRDDTLEITEL 980

Query: 272  PYQVNKAAMLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +V      E + E + E        I D ++       R VI++      D  +  L+
Sbjct: 981  PIRVWTQNYKESVLEPLLEGSDKQPALIQDFKEYHTDTTVRFVIKMSAQKLRDAEMEGLH 1040

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  + + + L        +   +  I K F   R++  + R  +     R ++ 
Sbjct: 1041 KVFKLQTAINTSSMVLFDAAGCLRKFRNVEEICKEFFETRKKKYIERKAFQEGMLRAQSE 1100

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             L   A  +    +   +I           +L+++ ++   +K   +L       + 
Sbjct: 1101 RLSNQARFILAKIKGEILIENKRKVAIV-EQLVKKGFDPDPVKKWKELQRRKELEMT 1156


>gi|55773630|dbj|BAA28664.2| typeII DNA topoisomerase [Emericella nidulans]
          Length = 1709

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 98/532 (18%), Positives = 202/532 (37%), Gaps = 49/532 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + D   +  +  +S TD + N  + +++   L R+IP + DG+KP  R++++ +M+  ++
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNIK 819

Query: 67   WNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
             +   VK   ++G+V  +  YH HG+A+++  +  +AQD+  S  +  +E  GNFGS   
Sbjct: 820  KD---VKVLDLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLK 875

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   ++ RY   RL   A  +        + +  + DG   EP V     P +L+NG  
Sbjct: 876  GGADASSARYIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGAD 934

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKN 239
            GI  G +T+IP +N  ++VD    +I   +I          +G     G      +G+  
Sbjct: 935  GIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLGPDKYKFSGLIK 994

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIAD 298
                                    +++ VTE+P +      + K+ E+++  +    I D
Sbjct: 995  --------------------QVSDKELEVTELPIRTWTQDFINKLEEMIKADKAPSLIKD 1034

Query: 299  LRDESDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
             +D +      +V++L      + +    L     L    +   +     + +      +
Sbjct: 1035 YKDYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNV 1094

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR------------IIR 405
                  F    +    K   ++       L  L      +  ++             +++
Sbjct: 1095 EAILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVHMIIDGDLVVSKKKKSVLVK 1154

Query: 406  FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               +    R      +  A + + +I+  +D       D    L+      +L + +  L
Sbjct: 1155 ELDSLGFKRFNKTADAAKAGETEKVIEASEDEDTEAQDDTQ-DLAHAF-DYLLGMAIWSL 1212

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            T    + +R ++     EI E + + S    L  + +          +T RR
Sbjct: 1213 TQERVEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRR 1264


>gi|326427379|gb|EGD72949.1| DNA topoisomerase II, variant [Salpingoeca sp. ATCC 50818]
          Length = 1761

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 145/399 (36%), Gaps = 35/399 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +  +   K  +K A+++G V     YH HG  ++   +
Sbjct: 698  RSIPSIMDGLKPGQRKVLFSCFKRKL---KDEIKVAQLAGYVSEHSAYH-HGEMSLAGTI 753

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  L L+   G FG+    G   A+ RY    L   A  +        ++ 
Sbjct: 754  VGMAQRFVGSNNLNLLLPIGQFGTRLAGGKDAASSRYIFTSLSPLARKIFHLADDALLNH 813

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VLVNG  GI  G ++++P +N  ++V+  +A+I+  + D 
Sbjct: 814  LED-DGQTIEPEFYAPILPMVLVNGSDGIGTGWSSSVPNYNPRDLVNALIAMIEGQEPD- 871

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              L     G    TG +             G+    +RG         D   I ++E+P 
Sbjct: 872  -ELHPWYAG---FTGEIT----------PKGKDKYAVRGTLK----KLDETTIEISELPI 913

Query: 274  QVNKAAMLEKIAELVRE--KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            +       E +  L  +  K+   I +          R V+ +            LY+  
Sbjct: 914  RTWTQPYKEFLEGLAADDGKKPPQILEFSQYHTDTTVRFVVSMTPEQMQAAETKGLYKVF 973

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L+   S + + L   +       G+ +    F +  V  R                   
Sbjct: 974  KLEGSISTSNMTLFDPQGRIKKYEGVQEILRDFFD--VRLRLYQKRKSLLADCMTSE-YK 1030

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDL 430
                 +  ++ +I  S      ++  + +   A      
Sbjct: 1031 KMDNKVRFILDVISGSLVISNRKKADILQELRAKGFAAF 1069


>gi|325187394|emb|CCA21933.1| predicted protein putative [Albugo laibachii Nc14]
 gi|325190307|emb|CCA24783.1| topoisomerase putative [Albugo laibachii Nc14]
          Length = 1499

 Score =  175 bits (443), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 101/531 (19%), Positives = 195/531 (36%), Gaps = 51/531 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DG KP  R++L+   +  +      +K A+++G V     YH HG A+++  +
Sbjct: 738  RSIPCLVDGFKPSQRKVLYCCFKRNLRVE---IKVAQLAGYVSEHSSYH-HGEASLHGTI 793

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S    L+   G FG+    G   A+ RY   +L+  A+   D      +++
Sbjct: 794  INMAQDFIGSNNSNLLSPNGQFGTRILGGKDAASPRYIFTKLEAIAYKFFDPNDNSLLNY 853

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                DG   EP       P VLVNG  GI  G ++ IP +N  ++++   A I       
Sbjct: 854  LDE-DGQLIEPEWYVPVIPMVLVNGSEGIGTGWSSFIPNYNPLDLIENLRARIKGEAPTK 912

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-IVIRGVSHIEKTSGDREQIVVTEIP 272
                     P  P      G    ++    G     V+RG+ H+E    D   +V+TE+P
Sbjct: 913  ---------PLVPWYRGFTGSIEERSGTRDGDSQAFVVRGIFHVE----DDSTLVITELP 959

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ--LYRY 330
             +       + +  L+    I D  +   +S        I +      +++L+   + R 
Sbjct: 960  VKTWTHTYKQFLESLMENDTIKDFKENHTDSKVL---FTISMTPEKMQEIVLSPGGIMRK 1016

Query: 331  TSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              L+S  S   + L   +G   +  +   I+ AF   R     +R   +L K  D+  +L
Sbjct: 1017 FKLESSISAANMHLFDADGRIQKYDSPHEIISAFYDIRLAYYGKRKAAMLQKLTDQIEML 1076

Query: 388  VGLAIAVA---------NLDEVVRIIRF---------SPNPETARRELMQRSWNASDIKD 429
                  +          +  + V ++            PN    +        +  +  +
Sbjct: 1077 ANKVKFILAVIQGDLIVSNRKKVELLHELVEMGYDKLYPNNSKGKNSDEDEEKDDQEGDE 1136

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                +      + S     L++ +   +      R       + ++       ++    +
Sbjct: 1137 EEGDLTKGYNYLLSMKIWSLTKERVDKLRAELKEREVEYKSLEAKSIEELWLTDLDTLEE 1196

Query: 490  ILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
            +L         I  + ++        R+ + +     ++++D   +ED V 
Sbjct: 1197 LLHETEETRQRINAQSIATVQNGSKKRQRKQIPRKKAIKEDDSEYKEDKVK 1247


>gi|221124382|ref|XP_002163411.1| PREDICTED: similar to phosphoserine aminotransferase [Hydra
           magnipapillata]
          Length = 495

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 55/209 (26%)

Query: 654 HGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAI 713
            G V++  L +F    ++G IA+ LD  D ++       ++D++L +  G+ VRF  + +
Sbjct: 1   MGTVKKTALDEFSNPRKAGIIAVDLDEGDFLIGAALTDGKHDVMLFSDGGKAVRFDENDV 60

Query: 714 RVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
           R   GRN+ GVRG+ L +G  VI+M +                                 
Sbjct: 61  RPM-GRNARGVRGMMLDEGQSVIAMLVAED------------------------------ 89

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                                 ++Q +LT +E G+GKRT+  ++    R  KG+ A   S
Sbjct: 90  ----------------------EQQSVLTATENGYGKRTNITEYTRHGRGTKGMIAIQQS 127

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTL 862
           + N  G +VA   V+  D+I+L++DKG L
Sbjct: 128 ERN--GKVVAATLVHAEDEIMLITDKGVL 154



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G  K+T+  +F  SN    GI A D+ + +    L+     +    ++L SD G  +R  
Sbjct: 2   GTVKKTALDEF--SNPRKAGIIAVDLDEGDF---LIGAALTDGKHDVMLFSDGGKAVRFD 56

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            N++R   R  +GV      + + V+++  + E E      +TE
Sbjct: 57  ENDVRPMGRNARGVRGMMLDEGQSVIAM-LVAEDEQQSVLTATE 99



 Score = 52.9 bits (125), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 791 QELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN 850
             L   +  ++  S+ G   R    D R   R+ +G+R   + +    G  V    V ++
Sbjct: 34  AALTDGKHDVMLFSDGGKAVRFDENDVRPMGRNARGVRGMMLDE----GQSVIAMLVAED 89

Query: 851 DQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIV 903
           +Q  ++  ++ G   R  + E     R TKG++    ++ + +VV+   +   + +
Sbjct: 90  EQQSVLTATENGYGKRTNITEYTRHGRGTKGMIAIQQSERNGKVVAATLVHAEDEI 145


>gi|312599337|gb|ADQ91360.1| hypothetical protein BpV2_193c [Bathycoccus sp. RCC1105 virus BpV2]
          Length = 1073

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 102/497 (20%), Positives = 192/497 (38%), Gaps = 56/497 (11%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            TE   S  E     +  + I+D +    + +++   L R+I  + DGLKP  R++L+   
Sbjct: 624  TEKKASELEVPYGNVERLGISDFIHKDLVNFSLAD-LKRSIAHVSDGLKPSQRKVLYACF 682

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
               +      +K A+++  V  K  YH HG  ++ D + ++A ++  S  + L+E  G F
Sbjct: 683  TKNLTSE---MKVAQLAAYVSEKTSYH-HGEVSLADTIVKLAHNFTGSNNINLLEPCGQF 738

Query: 118  GS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            G+  + G   +  RY   +L K+A  L D      +++  + DG   EP       P VL
Sbjct: 739  GTRLMGGKDASQTRYIFTKLTKSARILFDPKDDPVLNYLDD-DGKQIEPDYYVPILPTVL 797

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI  G ++ IP  N  +     +       I+ + ++ +    D  TG V     
Sbjct: 798  VNGTEGIGTGFSSYIPPFNPSD-----IKHNIERIINGENVIPMKPWFDKFTGRVFSNED 852

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G+           +  GV          + ++VTE+P         E +  L+ +K+   
Sbjct: 853  GL----------WITEGVW-----KSSGKSVIVTELPPGRWTQDYKEYLDTLIEKKK--- 894

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERF 352
            I +  + S        IE   G       N + +   LQ  F V+ + L        +  
Sbjct: 895  ITNYVNNSTTDDVNFSIEGYTG-------NDIIKDFKLQKTFHVSNMHLFHPTKGIHKYE 947

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   IL  FV  R E   +R  +L+   +++   L  ++  +  +     I+        
Sbjct: 948  SPEEILTDFVKIRSETYKKRKTHLICVLKEKTKKLENMSKFIDMVIHEKLIVF------- 1000

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                  +R     +++ + D ID S   + +  T   ++   ++I E        L    
Sbjct: 1001 ----RRKRVELEREMEKIFDKIDGSYEYLLNIKTYQYTDEAIQSIREETSKSRIELDTLQ 1056

Query: 473  IRNELNSLGIEIKECLD 489
              + ++    ++K    
Sbjct: 1057 QMSHIDMWKRDLKIYKQ 1073


>gi|38453797|dbj|BAD02199.1| DNA topoisomerase II [Arthroderma racemosum]
          Length = 1089

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 159/402 (39%), Gaps = 49/402 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+ M +  V  +   +K   ++G V  M  Y  HG+ +++  +
Sbjct: 672  RSIPSVVDGLKPGQRKVLYTMFKRNVRKD---IKVVELAGYVSGMTAYQ-HGDNSLHATI 727

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGK----D 149
              +AQ +  S  +  +E  GNFGS    G   A+ RY   RL   A  L     +    +
Sbjct: 728  VGLAQTFVGSNNINCLEPSGNFGSRLQGGSDSASARYIYTRLSPFARRLFHQADEPLLVN 787

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
             +D     DG   EP       P VL+NG  GI  G +T+IP +N  EVVD    ++   
Sbjct: 788  NID-----DGKVIEPETYVPVVPLVLINGADGIGTGWSTSIPNYNPEEVVDNLKRLMAGD 842

Query: 210  DIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            ++            +          +GI                           ++ +T
Sbjct: 843  ELVPMKPWFRGFKGEVTGSGDRYKFSGIIK--------------------QTGDNEVEIT 882

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQ-L 327
            E+P +       +K+ ++++ +++     D RD +       +I+     +    +   L
Sbjct: 883  ELPIRTWTQDFKDKLEDIIKAEKVPSFIKDYRDYNTHTNVHFIIQSGVKNTVKKAVEDGL 942

Query: 328  YRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
                 L    + + +     +       T   IL+AF A R ++  +R ++LL++ + + 
Sbjct: 943  EERFKLVKPIATSNMVAFDAEGRITRYETPEDILRAFYAVRIKLYEKRKQHLLSQLQSQL 1002

Query: 385  HVLVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNA 424
                 L      +  ++  +++          +EL ++++  
Sbjct: 1003 ---EKLTNQARFVQMIIDGKLVISKKKKAVLIQELQEKAFKP 1041


>gi|67538472|ref|XP_663010.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|40743376|gb|EAA62566.1| hypothetical protein AN5406.2 [Aspergillus nidulans FGSC A4]
 gi|259485149|tpe|CBF81963.1| TPA: DNA topoisomerase 2 (EC 5.99.1.3)
            [Source:UniProtKB/TrEMBL;Acc:O59864] [Aspergillus
            nidulans FGSC A4]
          Length = 1709

 Score =  174 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 98/532 (18%), Positives = 202/532 (37%), Gaps = 49/532 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
            + D   +  +  +S TD + N  + +++   L R+IP + DG+KP  R++++ +M+  ++
Sbjct: 761  NPDTFMDHSVAKISYTDFINNELIQFSMADNL-RSIPSMVDGMKPGQRKVMYTVMKRNIK 819

Query: 67   WNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
             +   VK   ++G+V  +  YH HG+A+++  +  +AQD+  S  +  +E  GNFGS   
Sbjct: 820  KD---VKVLDLTGQVFSLTAYH-HGDASMHQTIIGLAQDFVGSNNVNTLEPSGNFGSRLK 875

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   ++ RY   RL   A  +        + +  + DG   EP V     P +L+NG  
Sbjct: 876  GGADASSARYIHTRLSPFARKIFHPHDDPILKYLED-DGKEIEPWVYVPVVPMILINGAD 934

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKN 239
            GI  G +T+IP +N  ++VD    +I   +I          +G     G      +G+  
Sbjct: 935  GIGTGWSTSIPNYNPEDIVDNLKRMIRGEEIKPMQPWFKGFKGEVTQLGPDKYKFSGLIK 994

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV-DIAD 298
                                    +++ VTE+P +      + K+ E+++  +    I D
Sbjct: 995  --------------------QVSDKELEVTELPIRTWTQDFINKLEEMIKADKAPSLIKD 1034

Query: 299  LRDESDRQGYRVVIELKRGASAD-VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
             +D +      +V++L      + +    L     L    +   +     + +      +
Sbjct: 1035 YKDYNTNSDVHLVLQLDEKNVKEPLTQEFLEEKFKLSKTIATTNLVAFNAEGQMTKYPNV 1094

Query: 358  LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR------------IIR 405
                  F    +    K   ++       L  L      +  ++             +++
Sbjct: 1095 EAILEEFYRLRLKFYGKRKQHQLDQLQIELEKLTNQARFVQMIIDGDLVVSKKKKSVLVK 1154

Query: 406  FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
               +    R      +  A + + +I+  +D       D    L+      +L + +  L
Sbjct: 1155 ELDSLGFKRFNKTADAAKAGETEKVIEASEDEDTEAQDDTQ-DLAHAF-DYLLGMAIWSL 1212

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            T    + +R ++     EI E + + S    L  + +          +T RR
Sbjct: 1213 TQERVEKLRRQIGEKEHEIDELIKLSSEDIWLRDLDEFINEWRFQLSETDRR 1264


>gi|66347012|emb|CAI94714.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Fischerkietz]
 gi|66347014|emb|CAI94715.1| topoisomerase IV ParC [Salmonella enterica subsp. enterica serovar
           Senftenberg]
          Length = 87

 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYAELLL 87


>gi|69250185|ref|ZP_00605121.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
 gi|68193993|gb|EAN08553.1| similar to Type IIA topoisomerase (DNA gyrase/topo II topoisomerase
           IV) A subunit [Enterococcus faecium DO]
          Length = 120

 Score =  174 bits (442), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 26  QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY 85
           +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+  + K+ K AR  G+V+GKY
Sbjct: 3   KNAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 62

Query: 86  HPHGNAAIYDALARMAQDWSL--RLLLIEGQG 115
           HPHG++A Y+A+  MAQ +S   R L++ G G
Sbjct: 63  HPHGDSACYEAMVLMAQPFSTVIRWLMVRGTG 94


>gi|163788233|ref|ZP_02182679.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
 gi|159876553|gb|EDP70611.1| DNA gyrase A subunit [Flavobacteriales bacterium ALC-1]
          Length = 183

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 57/205 (27%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG--DQVISMAIVLHADADYDERICY 754
           +L  K G+ +RF  +  R   GRN+ GVRGI L     D+VI M  V             
Sbjct: 1   MLALKSGKAIRFEEAKTRPM-GRNASGVRGIRLQDENTDEVIGMIAVDDM---------- 49

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSS 814
                                                     +  IL VSE G+GKR+S 
Sbjct: 50  ------------------------------------------DSNILVVSENGYGKRSSL 67

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
            D+RI+NR GKG++   +++  + G LV++  V D D +++++  G  IR+ V ++R+  
Sbjct: 68  EDYRITNRGGKGVKTISITE--KTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVMG 125

Query: 875 RATKGVVIFSTAKDERVVSVERIRE 899
           RAT+GV + +    + + +V ++ +
Sbjct: 126 RATQGVKLINLKGKDSIAAVAKVMK 150



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 7/176 (3%)

Query: 604 WRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLS 663
           +      P  R  + +  + L        I     D+    +  ++  +++G  +R+ L 
Sbjct: 12  FEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDM---DSNILVVSENGYGKRSSLE 68

Query: 664 DF--IQINRSGKIAMKLDSRD-EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRN 720
           D+        G   + +  +   ++S++  T E+D+++  K G  +R  ++ +RV  GR 
Sbjct: 69  DYRITNRGGKGVKTISITEKTGNLVSIKNVTDEDDLMIINKSGIAIRMAVADLRVM-GRA 127

Query: 721 SVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + GV+ I+L   D + ++A V+  D +  E I      S          +   +  
Sbjct: 128 TQGVKLINLKGKDSIAAVAKVMKDDEEEVEEIDTETTDSQGANEDGTAIDTNETEN 183



 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRA 876
           R   R+  G+R   +   N    ++ +  V+D D  I++VS+ G   R  + + RI +R 
Sbjct: 18  RPMGRNASGVRGIRLQDEN-TDEVIGMIAVDDMDSNILVVSENGYGKRSSLEDYRITNRG 76

Query: 877 TKGVVIFS-TAKDERVVSVERIRESEI 902
            KGV   S T K   +VS++ + + + 
Sbjct: 77  GKGVKTISITEKTGNLVSIKNVTDEDD 103



 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD--ERVVSVERIRESE 901
           +L    G  IR    + R   R   GV       +  + V+ +  + + +
Sbjct: 1   MLALKSGKAIRFEEAKTRPMGRNASGVRGIRLQDENTDEVIGMIAVDDMD 50


>gi|325512972|gb|ADZ23659.1| GyrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 92

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 54/93 (58%), Positives = 64/93 (68%), Gaps = 1/93 (1%)

Query: 95  DALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
           D + RMAQ +SLR      QGNF S+DGD  AA RYTE RL K AH L+ DL K+TVDF 
Sbjct: 1   DTIVRMAQPFSLRYCW-RWQGNFSSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFV 59

Query: 155 PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMA 187
            NYDG+ + P V+  + PN+LVNG  GIAVGMA
Sbjct: 60  DNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 92


>gi|316974528|gb|EFV58014.1| DNA topoisomerase 2-alpha [Trichinella spiralis]
          Length = 1357

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 111/545 (20%), Positives = 205/545 (37%), Gaps = 63/545 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVIL------GRAIPDLRDGLKPVHRRI 56
            +  I      E+ +      +    S++     +IL       R+IP + DGLKP  R++
Sbjct: 693  KKQIQEANLPEEYLYQEDTKEISYKSFID--KELILFSNMDNERSIPSMVDGLKPGQRKV 750

Query: 57   LFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIE 112
            LF   +     +K+ VK A+++G V     YH HG  ++   +  +A ++  S  + ++ 
Sbjct: 751  LFTCFK---RNDKREVKVAQLAGSVAEHSAYH-HGEVSLMSTIINLAHNFVGSNNINILL 806

Query: 113  GQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
              G FG+    G   A+ RY    L      +     +  ++F    D    EP   C  
Sbjct: 807  PIGQFGTRLLGGRDAASARYIFTMLSPVTRAMFCTDDEPNLNFLFE-DNQKIEPFWYCPI 865

Query: 171  YPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAV 230
             P VLVNG  GI  G +T +P H+   VV     ++++ ++           P +P    
Sbjct: 866  LPLVLVNGCEGIGTGWSTKVPNHDPRIVVKNLKRLMNDEEL----------LPMYPWYKN 915

Query: 231  ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-- 288
              G     NA          R V   E  S D   + +TE+P         E + E +  
Sbjct: 916  FQGEISTLNA---------SRFVCFGEIASVDDTTLEITELPIGTWTQNYKESVLEPMLY 966

Query: 289  -REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGY 347
              + +   I D ++       R +I + +   A+   + +++Y  LQ++ + + + L   
Sbjct: 967  GADGKQPVIQDFKEYHTDTTVRFIIRMSKEKMAEANAHGIHKYFKLQTIINSSSMVLFDE 1026

Query: 348  KP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
                 +  T   IL +F   R ++ V+R  YL      +A+ L   A  +    E V  I
Sbjct: 1027 HGCLKKFETAKDILISFYKVRLDMYVKRKAYLEGHLEAQANRLKAQARFIMEKIEGVIKI 1086

Query: 405  RFSPNPETARRELMQRSWNASDIKD------LIDLIDDSSYTIGSDGTMYLSEV------ 452
                  +    +L++R + A  +K       +  L     +   +D    + E       
Sbjct: 1087 ENMK-KKHIVEQLVERGYPADPVKKWKEAENMRKLKAMEEFVDETDEANEVEETGANEED 1145

Query: 453  ----QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
                    +L + L RL+   +D +  + +    E+        +   L      + L V
Sbjct: 1146 VCLSDYDYLLSMALIRLSEEEKDKLLKDRDVKIDELNSLK--AKTPKMLWIEDLDKFLDV 1203

Query: 509  KDELD 513
             D+ +
Sbjct: 1204 LDKHE 1208


>gi|45550206|gb|AAS67881.1| ParC [Salmonella enterica subsp. enterica serovar Reading]
 gi|324331535|gb|ADY38650.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Paratyphi B]
 gi|324331539|gb|ADY38652.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYAELLL 87


>gi|156088413|ref|XP_001611613.1| DNA topoisomerase II [Babesia bovis T2Bo]
 gi|154798867|gb|EDO08045.1| DNA topoisomerase II, putative [Babesia bovis]
          Length = 1437

 Score =  174 bits (441), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 91/483 (18%), Positives = 176/483 (36%), Gaps = 34/483 (7%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  TD +    + ++I     R+IP + DG KP  R++LFG ++  +       
Sbjct: 654  DHSIKKLRYTDFINKELIQFSIYD-TERSIPSVVDGWKPGQRKVLFGCLKRNLV---GEC 709

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG A++   +  MAQ++  S  + ++E  G FGS    G   +
Sbjct: 710  KVAQLTGYVAEHSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKDAS 768

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            A RY   +L      +  +   + ++++ N +G   EP+      P VLVNG  GI  G 
Sbjct: 769  AARYIFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGIGTGF 827

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            ++ IP +N  +++D     ++N D+           P  P      G     +     +G
Sbjct: 828  SSQIPNYNPLDIIDNLKRYLNNVDMK----------PMVPWYHKFTGEIEPND-----KG 872

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
                 G            +I    I    +   +  +  E     +   I    D S  +
Sbjct: 873  GFDCLGNYQWLD-ENGLLEITELPIRKWTHDYRVFLESLEQGVNGKEPLILGFVDNSTHE 931

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVA 363
                 + +      +VI   + +   L++  +   + L     +         I++ F A
Sbjct: 932  SVHFTLNVNPECIEEVINEGVDKVFKLRTSIATTNMTLFDANKKLKRYSNELEIIRDFAA 991

Query: 364  FREEVVVRRTKYLLNKARDRAHVLV-GLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             R     +R  YL+N  +     +   +      ++E + + + +     A    +    
Sbjct: 992  VRLATYEKRKTYLINNLKLLLRRISNQVRFIHMVVNEELVLFKKAKATLVAELRDLGFDS 1051

Query: 423  NASDIKDLID--LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            N   +K   +   +++        GT          +L + L  LT      +  E    
Sbjct: 1052 NTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTLEQVQKLNEEHAQK 1111

Query: 481  GIE 483
              +
Sbjct: 1112 ENQ 1114


>gi|284027754|gb|ADB66702.1| ParC [Salmonella enterica subsp. enterica]
          Length = 100

 Score =  174 bits (441), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 67/96 (69%), Gaps = 3/96 (3%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           + DGLKPV RR+++ M ++G+    K+ + AR  G+V+GKYHPHG++A Y+A+  +AQ +
Sbjct: 6   IGDGLKPVQRRMVYAMSELGLTATFKFKRSARTVGDVLGKYHPHGDSAWYEAMVLLAQPF 65

Query: 105 SLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKA 138
           S R  L++GQG +G++D DP   AA RYTE RL   
Sbjct: 66  SYRGPLVDGQGFWGALD-DPKSFAAMRYTEYRLSNF 100


>gi|196000919|ref|XP_002110327.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
 gi|190586278|gb|EDV26331.1| hypothetical protein TRIADDRAFT_23201 [Trichoplax adhaerens]
          Length = 1164

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 99/494 (20%), Positives = 174/494 (35%), Gaps = 63/494 (12%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +     +KK +K A+++G V  M  YH HG A++   +
Sbjct: 702  RSIPSLMDGLKPGQRKVLFTCFK---RNDKKDIKVAQLAGSVAEMSAYH-HGEASLMGTI 757

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A ++ D   +  +++
Sbjct: 758  INLAQNFVGSNNINLLQPIGQFGTRLHGGKDSASARYIFTMLSPVARYMFDQKDEPLLEY 817

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            +   D    EP       P VLVNG  GI  G +T IP +N  E+VD    ++   +   
Sbjct: 818  QFE-DNLRIEPDWYAPLIPVVLVNGAEGIGTGYSTRIPNYNPREIVDNLKRLLAGEEP-- 874

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIVVT 269
                                   +   Y   +G I      +          +   + + 
Sbjct: 875  ---------------------IEMHPWYKNFKGEIKQVEENKYQIDGVIKKINETTLEIV 913

Query: 270  EIPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
            E+P +    A  E + E +    EK    I++ ++       R ++ L            
Sbjct: 914  ELPIRTWTQAYKEGVLEPMLHGGEKTPSFISNYKEYHTDTTVRFIVTLTEANMEAAEKIG 973

Query: 327  LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
            L +   L+  FS N + L              +    F         +  L     R   
Sbjct: 974  LLKKFKLEGSFSTNSMVLFDAHGCLRRYGNAQEILKEF--------YETKLEFYVKRKEW 1025

Query: 387  LVGLAIAVANL-DEVVRIIRFSPNPETARRELMQRS---------WNASDIKDLIDLIDD 436
            L GL  A +       R I    + + A     +R          +++  +K   +    
Sbjct: 1026 LEGLLEAESRKLSNQARFILEKIDGKLAIENKSKRDLIAMLKSANFDSDPVKSWQNKQKS 1085

Query: 437  SSYTIGSDGTMYLSEV--QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
               +  SD +   ++       IL + +  LT   +D++    N    E +       + 
Sbjct: 1086 VVESEESDASEQETDEGPDFNYILNMNMWSLTKERKDELIANKNKKIAEYQTLK--EKTP 1143

Query: 495  SRLLGIIKQELLSV 508
              L     +  L  
Sbjct: 1144 KMLWLEDIEVFLEE 1157


>gi|325519491|gb|EGC98872.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49]
          Length = 108

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 49/108 (45%), Positives = 75/108 (69%), Gaps = 1/108 (0%)

Query: 1   MTEHIISS-DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFG 59
           M ++        +  G  ++++ +  + +YL+YA++V+  RA+PD+ DG KPV RRILF 
Sbjct: 1   MDDNTSDLFAGSDAPGADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFA 60

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           M +MG+  + K VK AR+ G+V+GKYHPHG+ + YDAL R+AQD+SLR
Sbjct: 61  MNEMGLGPDAKPVKSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLR 108


>gi|1498007|gb|AAB06320.1| DNA gyrase A subunit [Campylobacter lari subsp. lari]
          Length = 77

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 48/77 (62%), Positives = 58/77 (75%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
           HRRIL+ M  +GV     Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+
Sbjct: 1   HRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSID 60

Query: 113 GQGNFGSVDGDPPAAER 129
           GQGNFGS+DGD  AA R
Sbjct: 61  GQGNFGSIDGDGAAAMR 77


>gi|313760372|emb|CBY65970.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760376|emb|CBY65972.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
 gi|313760378|emb|CBY65973.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score =  174 bits (440), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 53/79 (67%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTEC 133
           GNFGS   DPPAA RYTE 
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|18369822|dbj|BAB84106.1| DNA topoisomerase II [Talaromyces flavus var. flavus]
          Length = 1094

 Score =  174 bits (440), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 83/404 (20%), Positives = 158/404 (39%), Gaps = 36/404 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +  ++ +   +K   ++G V  M  Y  HG+A++   +
Sbjct: 676  RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---MKVVELAGHVSGMTAYQ-HGDASLQQTI 731

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  +  +E  GNFGS    G   A+ RY   RL   A  +        + +
Sbjct: 732  VGLAQNFVGSNNINCLEPSGNFGSRLQGGSDCASARYIYTRLSPFARRVYHSHDDPLLTY 791

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +LVNG  GI  G +++IP +N  ++V+    ++D  +I  
Sbjct: 792  NED-DGEKIEPEIYMPVVPMILVNGTDGIGTGWSSSIPNYNPEDIVENLRRMMDGEEIKP 850

Query: 214  DALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     G     G      +GI                          +++ +TE+P
Sbjct: 851  MQPWFRGFNGEVTDMGGDRYKFSGIIK--------------------ETGDKEVEITELP 890

Query: 273  YQVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             +       +K+ ++++ ++      D +D +       VI++        +   L    
Sbjct: 891  IRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHHKVHFVIQMDEKHMTAALSEGLEEKF 950

Query: 332  SLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L     + N+VA +      +   +  ILK F   R +   RR +Y L++ +     L 
Sbjct: 951  KLTKSIATSNLVAFDPEGRITKYAGVDDILKEFYTIRLKYYERRKQYQLSEMQRELDRLS 1010

Query: 389  GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
              A  V  + +   ++              +       +KD + 
Sbjct: 1011 NQARFVQMIIDGDLVVSKKKKSALVAELKEKNFKPFPKVKDAVK 1054


>gi|125540787|gb|EAY87182.1| hypothetical protein OsI_08583 [Oryza sativa Indica Group]
          Length = 1486

 Score =  174 bits (440), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 128/757 (16%), Positives = 230/757 (30%), Gaps = 105/757 (13%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +      +K A+ S
Sbjct: 644  IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVKE---IKVAQFS 699

Query: 79   GEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
            G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 700  GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 758

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
              L      +         D   NY   DG   EP       P VLVNG  GI  G +T 
Sbjct: 759  TLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTF 814

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP +N  ++V     ++++  ++         +G    TG    G +             
Sbjct: 815  IPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGGVS------------Y 862

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--------------------- 287
             + G+  +     D   + +TE+P +       E +  +                     
Sbjct: 863  TVTGIIEV----VDDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGKGKGKVK 918

Query: 288  ----VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
                  +     I      SD +    +I L +   A  +   L +   L +      + 
Sbjct: 919  EKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMH 978

Query: 344  LNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            L        +  T   ILK F   R E   +R + LL         L      +  + E 
Sbjct: 979  LFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEG 1038

Query: 401  VRIIRFSPNPE----------TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              I+      E                 QR+  ++      D  ++ S    + G+    
Sbjct: 1039 DIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANVGSSDYE 1098

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
             + + AI  L L R+  L  +  R E     ++      +              L     
Sbjct: 1099 YLLSMAIGTLTLERVQQLIAEKSRMENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDS 1158

Query: 511  ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH-----LGYVKRVPLSVYRAQRRGGKG 565
                 RR     G           R     T +       G      +    A R+   G
Sbjct: 1159 MDAEERRATRNAGGGAAPKAAPKRRPRKTATNTQAAESSDGNAAAPAVPKPAAPRKKPAG 1218

Query: 566  RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
            ++ +   +++                         +      +              +L+
Sbjct: 1219 KASLADSEDEDYVAAIPKPAAQKKQPAKKASTQLSDDEDDEVLALKDRLA-----AYNLD 1273

Query: 626  QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
                 T +     +E +         +K G  ++           S    +  D  DE +
Sbjct: 1274 DHSEDTAMETETTEEQAKGKKGRKEPSKRGAAKKA---------ISSLAVISDDEEDETV 1324

Query: 686  SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
             ++   +++             F +  + V  GR   
Sbjct: 1325 PIDEDDEDD-------------FAMEEVPVKKGRGKK 1348


>gi|186510360|ref|NP_001118686.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
          Length = 1438

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 173/475 (36%), Gaps = 47/475 (9%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +   +  +K +K A++ G V  +  YH HG  ++  
Sbjct: 700  LQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQLVGYVSLLSAYH-HGEQSLAS 755

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            A+  MAQD+  S  + L+   G FG+    G   A+ RY   +L      L        +
Sbjct: 756  AIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLL 815

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            D   N DG   EP   +    P VLVNG  GI  G +T IP +N  E+V     +++   
Sbjct: 816  D-YLNEDGQRIEPTWYMPI-IPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGES 873

Query: 211  IDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            +          +G    T +              G  +  I G+        D   I +T
Sbjct: 874  MVPMDPWYRGFKGTIEKTAS------------KEGGCTYTITGLYE----EVDETTIRIT 917

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            E+P +         +  L  +       D++  +D +     + L              +
Sbjct: 918  ELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFDLILSEENMLAARQEGFLK 977

Query: 330  YTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               L +  + + + L   K    +  T   IL+ F   R E   +R + ++         
Sbjct: 978  KFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELLK 1037

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-----NASDIKDLIDLIDDSSYTI 441
            L   A  +  +     II           +L Q+ +      A  ++  I    D     
Sbjct: 1038 LENKARFILAVLSG-EIIVNKRKKADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAE 1096

Query: 442  GSDGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              +  +        Y+   +   +L + +A LT    +++  + + + I + +  
Sbjct: 1097 EPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMK 1151


>gi|326536392|ref|YP_004300833.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
 gi|299483473|gb|ADJ19567.1| gp52 DNA topoisomerase II medium subunit [Acinetobacter phage 133]
          Length = 442

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 100/471 (21%), Positives = 177/471 (37%), Gaps = 46/471 (9%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           +TD +      +A+  +  RAIP+L DGLKPV R +L   +Q+       Y K A ++G 
Sbjct: 8   LTDIINGEARDFALYTVENRAIPNLMDGLKPVQRFVLHRAIQLCKSKPDDYHKLAGVAGA 67

Query: 81  V--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKA 138
              +G YH HG  +  DA A MA  W+    +++G+GNFGS      AA RY ECR+   
Sbjct: 68  AASLG-YH-HGEVSAQDAGALMANTWNNNCPILDGKGNFGSRLVQKAAASRYIECRV--- 122

Query: 139 AHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHNLG 196
            H       KDT +  P +      P    L    P VL+NG  GI  G ATNI  H+  
Sbjct: 123 -HDNFRKYFKDT-EVAPAHKDDDHIPPAYYLPI-IPMVLINGVQGIGTGFATNILPHSEA 179

Query: 197 EVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHI 256
            +++     +          ++      FP     +           G   ++       
Sbjct: 180 SIIECTKLALQGK-------LDKEPQVQFPQFKGTVVCNDENKYSLFGSYKLI------- 225

Query: 257 EKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKR 316
                 + QI +TEIPY+ ++A  +E   +++    ++   D        G++V +    
Sbjct: 226 -----GKTQIEITEIPYKYDRADYVENCLDILESDGLIVSYDDNCGKHGFGFKVKLAKAF 280

Query: 317 GASADVILNQLY--RYTSLQSLFSVNMVALNGYKPE--RFTLIGILKAFVAFREEVVVRR 372
               D      Y      L+   +  +  ++             ++  FV  R++ V  R
Sbjct: 281 NLPEDEAKRHAYIVDKFKLKQDITQFIYTIDEVGALRGFPNASSLIHHFVEVRKQFVQAR 340

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                 +AR    + +  A  +  + +   +I+             +R     +I  L +
Sbjct: 341 IDKKTEEARRNLQLAIAKAFFIRKVLDGTIVIKG-----------KKRQELKDEIVALGE 389

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
               +   + S    +++E +   +LE      + L      + +     +
Sbjct: 390 PFASNVDALLSLNVYHMAEDEAVKLLERAQEAKSELEYWTSTDAVTEYMKD 440


>gi|312376011|gb|EFR23229.1| hypothetical protein AND_13286 [Anopheles darlingi]
          Length = 1530

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 163/407 (40%), Gaps = 35/407 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 716  RSIPCMLDGLKPGQRKVMFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQSLCSTI 771

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+   G FG+    G   A+ RY    L      +   L    +++
Sbjct: 772  INLAQNFVGSNNINLLYPGGQFGTRLTGGKDSASPRYIFTMLSTLTRLIFHPLDDPLLEY 831

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +   D    EPV  L    P +LVNG  GI  G +T IP HN  +V+     +++  +  
Sbjct: 832  QYE-DNQRIEPVWYLPI-IPMLLVNGAEGIGTGWSTKIPNHNPRDVIANIRRMLNGEEPK 889

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            +         P +     ++   G +     G  +++      I +              
Sbjct: 890  VLN-------PWYKNFRGLVESVGHQKYLTVGNVALLDGQKIEISELPIGTWT------- 935

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA-----DVILNQL 327
             Q  K  +LE +     +K+   I+D ++ +     R V+    G  A     +   ++L
Sbjct: 936  -QTYKENVLEPLLHG-SDKQKAVISDYKEYNTDTTVRFVVSFLPGEYAKLYAEEGGFHRL 993

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            ++ TS  S  S+N      Y         I + F   R E   +R +YLL   +  A  +
Sbjct: 994  FKLTSSISTSSMNAFDDKNYLKRYDHANSIFQDFYTIRLEYYGKRREYLLGMLQAEADSM 1053

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
               A  +       ++   +   +    E+++R +    IK+    +
Sbjct: 1054 SDKARFI-MEKCSGQLTVENKKRKALIEEMIKRGYRPDPIKEWKRRV 1099


>gi|3152711|gb|AAC17124.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 77

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 62/77 (80%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DG
Sbjct: 1   LGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG 60

Query: 123 DPPAAERYTECRLQKAA 139
           D  AA+RYTE R+ K A
Sbjct: 61  DSAAAQRYTEARMSKIA 77


>gi|224007305|ref|XP_002292612.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971474|gb|EED89808.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1179

 Score =  173 bits (439), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 94/476 (19%), Positives = 176/476 (36%), Gaps = 57/476 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R++P++ DGLKP  R++L+   +  +   K  +K A+++G       YH HG A+++  +
Sbjct: 716  RSLPNVVDGLKPSQRKVLYACFKRNL---KDEIKVAQLAGYCAEHTAYH-HGEASLHSTI 771

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  + L+   G FG+  + G+  A+ RY    L   +  L         D 
Sbjct: 772  IGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIFTHLSPLSRLLFPVDD----DM 827

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              NY   DG   EP   C   P +LVNG  GI  G +T IP HN  +V++   A +D   
Sbjct: 828  LLNYKEEDGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQHNPLDVLNYIRAKLDETK 887

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT--SGDREQIVV 268
                A+   ++G                  +  G      RG    E          +V+
Sbjct: 888  K--PAIRPWVKG------------------FEGGITVDSKRGDYVTEGIITPQKNSSVVI 927

Query: 269  TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            +E+P  V        +  ++  K+    +  ++ +        +++       ++   + 
Sbjct: 928  SELPVGVWTNDYKATLVAML--KKAEIKSFSQNHTTTT-VSFNVKVNAAKLNRLLKGDML 984

Query: 329  RYTSLQ---SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   L+   S  +++    +       +   I  AF   R ++   R   L +     A 
Sbjct: 985  KTFKLRKALSTRNMHAFTTDMKIARYNSPEEIADAFFPVRLDLYADRKSVLESNMEYSAS 1044

Query: 386  VLV---GLAIAVANLDEVVRIIRFSPNPETARRELMQ--RSWNASDIKDLIDLIDDSSYT 440
            ++        AV+     +   R S    TA  E M+  +      IK   ++      +
Sbjct: 1045 LMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEFSKQSELDAIKSNNNIAQRRESS 1104

Query: 441  IGSDGTMYLSEVQT-------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                      E            +L L L+ LT    D + ++      ++++  +
Sbjct: 1105 NVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKIDALNDDAAKTDTKLEQIKN 1160


>gi|289677156|ref|ZP_06498046.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 80

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/80 (62%), Positives = 60/80 (75%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
           G+ A+YD + RMAQ +SLR LL++GQGNFGSVDGD  AA RYTE R+ K AH LL DL K
Sbjct: 1   GDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHK 60

Query: 149 DTVDFRPNYDGSFQEPVVLC 168
           +TVD+ PNYDG+   P VL 
Sbjct: 61  ETVDWVPNYDGTEMIPAVLP 80


>gi|15229538|ref|NP_189031.1| TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA
            topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/
            DNA-dependent ATPase [Arabidopsis thaliana]
 gi|1174740|sp|P30182|TOP2_ARATH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|474890|gb|AAA65448.1| topoisomerase II [Arabidopsis thaliana]
 gi|9294657|dbj|BAB03006.1| DNA topoisomerase II [Arabidopsis thaliana]
          Length = 1473

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 173/475 (36%), Gaps = 47/475 (9%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +   +  +K +K A++ G V  +  YH HG  ++  
Sbjct: 700  LQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQLVGYVSLLSAYH-HGEQSLAS 755

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            A+  MAQD+  S  + L+   G FG+    G   A+ RY   +L      L        +
Sbjct: 756  AIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKDDDLLL 815

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            D   N DG   EP   +    P VLVNG  GI  G +T IP +N  E+V     +++   
Sbjct: 816  D-YLNEDGQRIEPTWYMPI-IPTVLVNGAEGIGTGWSTFIPNYNPREIVANVRRLLNGES 873

Query: 211  IDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
            +          +G    T +              G  +  I G+        D   I +T
Sbjct: 874  MVPMDPWYRGFKGTIEKTAS------------KEGGCTYTITGLYE----EVDETTIRIT 917

Query: 270  EIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            E+P +         +  L  +       D++  +D +     + L              +
Sbjct: 918  ELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFDLILSEENMLAARQEGFLK 977

Query: 330  YTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
               L +  + + + L   K    +  T   IL+ F   R E   +R + ++         
Sbjct: 978  KFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEYYEKRKETVVKNMEIELLK 1037

Query: 387  LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW-----NASDIKDLIDLIDDSSYTI 441
            L   A  +  +     II           +L Q+ +      A  ++  I    D     
Sbjct: 1038 LENKARFILAVLSG-EIIVNKRKKADIVEDLRQKGFTPFPRKAESVEAAIAGAVDDDAAE 1096

Query: 442  GSDGTM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              +  +        Y+   +   +L + +A LT    +++  + + + I + +  
Sbjct: 1097 EPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVEELLADRDKMIIAVADMK 1151


>gi|328876909|gb|EGG25272.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1233

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/518 (18%), Positives = 192/518 (37%), Gaps = 68/518 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +S  D +    + Y+      R+IP + DGLKP  R+IL+   +  +      +
Sbjct: 765  DHSIKELSFDDFINKELIHYSWAA-NHRSIPSVMDGLKPGQRKILYAAFKRKLTSE---I 820

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+ SG V     YH HG  ++   + +MAQD+  S  + L+   G FG+    GD  A
Sbjct: 821  KVAQFSGYVAEHTAYH-HGEQSLSSTIVKMAQDFVGSNNIPLLTSGGQFGTRLQGGDDSA 879

Query: 127  AERYTECRLQKAAHFLL--------DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
            + RY   +L      +           L ++    +PNY         +    P +LVNG
Sbjct: 880  SPRYIFTKLNSITRLIFNDLDDDLLKYLEEEGEMIQPNY--------YVPI-LPMILVNG 930

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              GI VGM+ ++P ++  +++D  + +++N    + AL+   RG    TG ++ G   + 
Sbjct: 931  SDGIGVGMSNSVPLYSPIDLIDYLLNLLNNQKQ-MKALVPWYRG---FTGTIVRGSNAVN 986

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             ++ T      +               +V++++P           + +LV +     I  
Sbjct: 987  GSFKTSGVITRV------------GRTLVISDLPIGKWTVDYKVVLNDLVEK---DFIKS 1031

Query: 299  LRDESDRQGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYK--PERFT 353
              D +        I        ++     N+L     L S    N++  +      +  +
Sbjct: 1032 YHDGNTENSVSFTIHFTNDQLEEIDEMTDNELIDKFKLNSSLHSNLMLFDTNGNIKKYES 1091

Query: 354  LIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
               I+  F  +R ++ V R K           +   L   +   +  ++ I    + +  
Sbjct: 1092 TEEIIGEFFQYRRKLYVDRKK----------MLQDRLKKQIDKFNVTIQFISLIASGKVK 1141

Query: 414  RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDI 473
                 ++       K+   L  + +     +    L       IL++   ++  L ++  
Sbjct: 1142 LGGKTKQLIIEELHKNKFKLAPNQNQEEMFNYLFNL------PILDMTQEKIDTLTQNLS 1195

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
            +       I+ +E   +  +  + L     +  + K +
Sbjct: 1196 KRTEEFNFIQSQESDQLWKTDLQQLKDFLLKDKTYKRK 1233


>gi|1053073|gb|AAA80683.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803]
          Length = 71

 Score =  173 bits (439), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARM 100
           A+PD+RDGLKPVHRRIL+ M ++G+  ++ + KCAR+ G+V+GKYHPHG+ ++YDAL RM
Sbjct: 2   ALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGDVLGKYHPHGDQSVYDALVRM 61

Query: 101 AQDWSLRLLL 110
            QD+S R  L
Sbjct: 62  VQDFSSRYPL 71


>gi|68069037|ref|XP_676429.1| DNA topoisomerase II [Plasmodium berghei strain ANKA]
 gi|56496123|emb|CAH96271.1| DNA topoisomerase II, putative [Plasmodium berghei]
          Length = 1092

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 139/359 (38%), Gaps = 41/359 (11%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
              R+IP++ DG KP  R++L+G  +  +       K A++ G +     YH HG +++  
Sbjct: 740  TERSIPNIMDGWKPGQRKVLYGCFKRNLRNE---CKVAQLVGYIAEHSAYH-HGESSLQQ 795

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  +  +E  G FGS    G   +A RY   +L  +   + ++     +
Sbjct: 796  TIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIFTKLASSTRSIFNEYDDPIL 855

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
             +  N +G   EP       P +LVNG  GI  G ++ IP +N  ++++     ID    
Sbjct: 856  KY-LNEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPNYNYKDIINNIKKYID---- 910

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK----TSGDREQIV 267
                     + P  P          +   Y   +G I   G S  E        D E + 
Sbjct: 911  ---------KEPLVP----------MVPWYKDFKGRIEPNGKSGYETIGIINKIDDETLE 951

Query: 268  VTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            +TE+P +       E + EL+ +++   I D  D S  +     I++            L
Sbjct: 952  ITELPIKRWTQDYKEFLEELLTDEKNQLIIDYIDNSSHEDVCFTIKMDPTKLKRAEEEGL 1011

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDR 383
             +   L+S  +   + L     +         ILK F   R      R  YL++K    
Sbjct: 1012 EKVFKLKSTLTTTNMTLFDPNLKLQRYASELDILKDFCFHRLNAYTDRKNYLISKLEKE 1070


>gi|312299479|gb|ADQ73655.1| GyrA [Neisseria meningitidis]
          Length = 80

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 60/80 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQ 136
           FGSVDG   AA RYTE R+ 
Sbjct: 61  FGSVDGLAAAAMRYTEIRMA 80


>gi|320580632|gb|EFW94854.1| DNA topoisomerase II [Pichia angusta DL-1]
          Length = 1372

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 159/399 (39%), Gaps = 36/399 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + I++ +    + +++   + R+IP + DG KP  R++L+G+ +  +      +
Sbjct: 712  DPNLTEIPISEFINKELILFSMADNI-RSIPSVMDGFKPTQRKVLYGVYKRNLTSE---I 767

Query: 73   KCARISGEVMGK---YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPP 125
            K A++ G  +G+   YH HG A++   +  +AQD+  S  L +++  G FGS    G   
Sbjct: 768  KVAQLVGY-IGEHSGYH-HGEASLTQTIISLAQDFVGSNNLNILKPNGGFGSRASGGKDA 825

Query: 126  AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            +A RY    +      + + L    +++  + D    EP       P +LVNG  GI  G
Sbjct: 826  SAARYIFTEVTPITRKVYNTLDNPLLNYLQD-DEQTVEPQWYVPVLPMILVNGSEGIGSG 884

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T IP  N  ++V    A+++  ++    ++   +G             G  +    G 
Sbjct: 885  WSTQIPPFNPVDIVKNIRALMNGEEM--VDMIPWFKG-----------WEGTIS--RIGP 929

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDES 303
                + G         D   + +TE+P ++    M E + + +   +K+   I D+ +E 
Sbjct: 930  DKFRMEGNIE----EIDDTTVEITELPARMWTITMKEFLLQAIAGSDKQKPWIKDM-EEQ 984

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
               G + V+ L +          L     L S+ + + +     +        + +    
Sbjct: 985  HGVGIKFVVTLSKEEMEKTRRIGLKERFKLISIINTSNMVAFDPQGRIKKYDHVNQIIED 1044

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            +    +    +     A   ++    L+     +  ++ 
Sbjct: 1045 YYLVRLDYYQRRKDYMADLFSNQFEKLSYQAKFVKMIID 1083


>gi|297516663|ref|ZP_06935049.1| DNA topoisomerase IV subunit A [Escherichia coli OP50]
          Length = 510

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 117/477 (24%), Positives = 207/477 (43%), Gaps = 53/477 (11%)

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRG 317
              +   +V++ +P+QV+ A +LE+IA  +R K++  + DLRDESD +   R+VI  +  
Sbjct: 3   WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 62

Query: 318 A-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKY 375
               D ++N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y
Sbjct: 63  RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 122

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L K   R H+L GL +A  N+DEV+ IIR    P+ A                      
Sbjct: 123 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---------------------- 160

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  
Sbjct: 161 -------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASER 213

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPL 553
           ++  ++K+EL +        RR+ + E      M + D +  E + + +S +G+V     
Sbjct: 214 KMNNLLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV----- 268

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQA 613
              R+ +       G+  +  D         ++  V+F  S G  Y      LP    + 
Sbjct: 269 ---RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RG 323

Query: 614 RGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGK 673
           +G+ L   L+L  G  +  ++         ++  ++ A+  G       +D +  NR+GK
Sbjct: 324 QGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGK 377

Query: 674 IAMKLDSRDEIL-SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL 729
             + L     ++  V      + +L  T+ G+ + FP+S +   +     G + I++
Sbjct: 378 ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKIINI 432



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 269 RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 326

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 327 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 382

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 383 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 436


>gi|157311570|ref|YP_001469613.1| DNA topisomerase II medium subunit [Enterobacteria phage Phi1]
 gi|149380774|gb|ABR24779.1| gp52 topoisomerase II medium subunit [Enterobacteria phage Phi1]
          Length = 448

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 107/487 (21%), Positives = 185/487 (37%), Gaps = 53/487 (10%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            K +T  S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ 
Sbjct: 2   NKSVTYRSLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFR 61

Query: 73  KCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           K A I   V  +G YH HG     +A + MA  WS    L++GQGNFGS       A RY
Sbjct: 62  KMADIGSGVAELG-YH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARY 119

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMAT 188
              R+    H     + KD ++  P ++     P    L    P VL NG  GIA G  T
Sbjct: 120 IFARV----HENFFKIYKD-MNCAPKHEDLEHIPPAFYLPV-VPMVLANGISGIATGYKT 173

Query: 189 NIPTHNLGEVVDGC-VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           +I  H+L  +++   +A+    D +         G   P                  R  
Sbjct: 174 DILPHSLESLIECTELALAGKLDKEPSVQFPKFTGKVIP---------------RDDRDG 218

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
           +++ G   +      +  + ++E+PY   K    E +A L   +    I    D   + G
Sbjct: 219 VILEGTYEL----NGKTTLTISEVPY---KFDREEYVAVLDALEEKDLIVSYNDRCSKDG 271

Query: 308 YRVVIELKRGASADVI----LNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAF 361
           +R  + LKR             ++ +   L  L + N+V +N             +++ F
Sbjct: 272 FRFEVTLKRDYFKSEDESARHEKIMKDFKLTQLVAQNIVVVNERGLVEVFEKASDLIRRF 331

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
           V  R   V +R + +      +A  L     A+A  + + R+I+     +  ++  + +S
Sbjct: 332 VEIRLGYVDKRIELM------QAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKAEVMQS 385

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
            N        + +   +  + S     +++ +   +++      +          +    
Sbjct: 386 INGH------EKLRPYADKLVSMPLYSVTQEEYDRLVKDAEKHHSEYEYWTKTTAMKEYK 439

Query: 482 IEIKECL 488
            ++KE  
Sbjct: 440 KDLKELK 446


>gi|330793204|ref|XP_003284675.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
 gi|325085373|gb|EGC38781.1| hypothetical protein DICPUDRAFT_28071 [Dictyostelium purpureum]
          Length = 1260

 Score =  173 bits (437), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/491 (19%), Positives = 187/491 (38%), Gaps = 74/491 (15%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +      +K +++SG V  +  YH HG  ++   +
Sbjct: 799  RSIPSLIDGLKPGQRKILFASFKRRLTSE---IKVSQLSGYVAEQTSYH-HGEQSLNSTI 854

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MA ++  S  + L+   G FG+    GD  A+ RY   +L+  +  L +++     D 
Sbjct: 855  IKMAHNFVGSNNIPLLTPSGQFGTRLQGGDDSASARYIFTKLEPISRHLFNEMD----DA 910

Query: 154  RPNYDGSFQE---PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              NY     E   P       P VLVNG  GI VGMAT IP  +  ++++  +  +DN  
Sbjct: 911  LLNYLEEEGESIQPDYYVPIIPMVLVNGSEGIGVGMATTIPLFSPIDLIEQIICRLDN-- 968

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV--IRGVSHIEKTSGDREQIVV 268
                                +     I   Y   +G+I   ++          D + +V+
Sbjct: 969  --------------------VPPLKKIIPWYRGFKGTIQPNLKSYKTNGVIKFDGKGLVI 1008

Query: 269  TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL---KRGASADVILN 325
            +E+P     +   + + +L+ +  I    +   E+        I L   +     D+  N
Sbjct: 1009 SELPIGKWTSDYKDVLNDLIEKDVIRGFQEANTENS---VHFNILLSNQQMEEMEDLSEN 1065

Query: 326  QLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
            ++     L S   +N+   +      +  +   I+  F   R E   +R          R
Sbjct: 1066 EMITLFKLSSNLHLNLTVFDEKNKIVKYESPEEIIDHFFNIRLEFYNKR----------R 1115

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            +H++  L   +  L   ++ +    + +   +   ++             + D   +   
Sbjct: 1116 SHLMASLTQQIKRLSSTIKFLETIASGKLKIQGRTKQQ------------LIDDLESQHD 1163

Query: 444  DGTMYLSEVQ---TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
             G+    E Q   + +IL++   R+  L     + ++    I+  +   +  +  + L  
Sbjct: 1164 FGSHTPEEYQHLFSLSILDITKERIDNLQSQLNKRQVEFNQIKDSDSSSLWKADLKQLKE 1223

Query: 501  IKQELLSVKDE 511
              ++    + +
Sbjct: 1224 YLEKSQDFQKK 1234


>gi|324331537|gb|ADY38651.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi]
          Length = 87

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 3/88 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDNACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLL 143
           G+ D DP   AA RYTE RL K A  LL
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYAELLL 87


>gi|195119011|ref|XP_002004025.1| GI19824 [Drosophila mojavensis]
 gi|193914600|gb|EDW13467.1| GI19824 [Drosophila mojavensis]
          Length = 1431

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/507 (20%), Positives = 189/507 (37%), Gaps = 45/507 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEMSLQMT 747

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    + 
Sbjct: 748  IVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLQ 807

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP+      P VLVNG  GI  G +T I  +N  +++     +I+N +  
Sbjct: 808  YQVD-DGQRIEPLWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRDMITNLRRMINNEE-- 864

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKN--AYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                      P  P      G     +   Y       ++              +I +TE
Sbjct: 865  --------PLPLHPWYKNFTGTMEYVSDGRYVHSGNVQIL-----------PDNRIEITE 905

Query: 271  IPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGAS-----ADV 322
            +P  V      E + E++     K    I+D R+       R VI    G        + 
Sbjct: 906  LPIGVWTQNYKENVLEVLSNGTEKVKAIISDYREYHTDTTVRFVITFAPGEFERLRSEEG 965

Query: 323  ILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
              +++ + +S  S   ++    N       T   IL  F   R E   RR  YL+ +   
Sbjct: 966  GFHRVLKLSSSISTNQMHAFDENNCLRRFPTPKDILVEFYKLRLEYYNRRKDYLVGQLTA 1025

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
            +A  L   A  +    E   +I      +    EL++R +    +K+    I        
Sbjct: 1026 QADRLSDQARFILEKCEKKLVIEN-KQRKMMIDELIKRGYRPDPVKEWQRRIKMEDAEAA 1084

Query: 443  SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
             D      E  +      ++ +     +   +         +      + +  R   ++K
Sbjct: 1085 EDDEEE--EESSVGASSKKIKKEVDPEKAFQKLTEVKKFDYLLGMSMWMLTEERKNELLK 1142

Query: 503  QELLSVKDELDTPRRTRIVEGLLDMED 529
            Q  L + +  +  ++T     L D+++
Sbjct: 1143 QRDLKIAELDNLMKKTPSHLWLDDLDN 1169


>gi|86438844|emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 143/366 (39%), Gaps = 30/366 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +  +D +    + +++   L R+IP + DGLKP  R+ILF   +          K A+ S
Sbjct: 643 IKYSDFVHKELIQFSMAD-LQRSIPSMVDGLKPGQRKILFSSFKRNFVKEA---KVAQFS 698

Query: 79  GEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTE 132
           G V     YH HG  ++   +  MAQD+  S  + L++  G FG  ++ G   A+ RY  
Sbjct: 699 GYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNINLLQPNGQFGTRNLGGKDHASARYIY 757

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
            RL     FL        +D+  N DG   EP       P VLVNG  GI  G ++ IP 
Sbjct: 758 TRLSPITRFLFSKDDDRLLDY-LNEDGQSIEPTWYVPIIPTVLVNGSEGIGTGWSSYIPN 816

Query: 193 HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
           +N  ++V     ++D   +         RG    TG +         +Y           
Sbjct: 817 YNPRDIVANVRRLLDGDAMVPMDP--WYRG---FTGTIEKTVKESGVSYT---------A 862

Query: 253 VSHIEKTSGDREQIVVTEI-PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVV 311
              IE+ S    +I    I  +  +    LE I+E   + +   I      SD     ++
Sbjct: 863 CGIIEEVSETSLRISELPIRRWTQDYKEFLESISEGNDKAKDPFIEGFTQHSDHSTVDII 922

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEV 368
           + L+           L +   L +  S + + L   K    +  T   IL+ F   R E 
Sbjct: 923 VHLREEKLMAAKQEGLLKKFKLTTSISTSNMHLFDRKGVIKKYDTPEQILEDFFHLRLEF 982

Query: 369 VVRRTK 374
             +R K
Sbjct: 983 YEKRKK 988


>gi|195438268|ref|XP_002067059.1| GK24224 [Drosophila willistoni]
 gi|194163144|gb|EDW78045.1| GK24224 [Drosophila willistoni]
          Length = 1453

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/497 (20%), Positives = 188/497 (37%), Gaps = 41/497 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 695  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 750

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 751  IVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 810

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++   DG   EP+  L    P VLVNG  GI  G +T I  HN  E++     +I++ D 
Sbjct: 811  YQ-TDDGQRIEPLWYLPI-IPMVLVNGAEGIGTGWSTKIANHNPREIIRNLRRMINSED- 867

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      GR    +    GR        +   +     ++I +TE+
Sbjct: 868  ---------PLPMHPWYKNFRGRIEYVS---DGRY-----VHTGNIQMLPG-DRIEITEL 909

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGAS-----ADVI 323
            P  V      E + E++     K    +++ R+       R V+    G        +  
Sbjct: 910  PLGVWTQTYKENVLEVLSNGTDKVKAVVSEYREYHTDTTVRFVVSFAPGEFNRLRSEEGG 969

Query: 324  LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
              ++++ TS  S   ++    +       + I ILK F   R E   RR  YL+ +   +
Sbjct: 970  FYRVFKLTSSLSTNQMHAFDQSNCLRRFPSSIDILKEFYTLRVEYYCRRKDYLVGQLTAQ 1029

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            A  L   A  +    E   ++      +    EL +R +    +K+    I         
Sbjct: 1030 ADRLSDQARFILEKCEKTLVVEN-KQRKAMCEELAKRGYRPDPVKEWQRSIKLEDAEKDE 1088

Query: 444  DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
            +        +  A    ++ +     +   +         +      + +  +   ++KQ
Sbjct: 1089 EEDEGEEAGEAAASGSKKVKKEVDPEKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQ 1148

Query: 504  ELLSVKDELDTPRRTRI 520
                + +  +  ++T  
Sbjct: 1149 RDSKLSELDNLMKKTPQ 1165


>gi|41052970|dbj|BAD07880.1| putative DNA topoisomerase II [Oryza sativa Japonica Group]
          Length = 1525

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 128/758 (16%), Positives = 231/758 (30%), Gaps = 106/758 (13%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +      +K A+ S
Sbjct: 682  IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVKE---IKVAQFS 737

Query: 79   GEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
            G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 738  GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 796

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
              L      +         D   NY   DG   EP       P VLVNG  GI  G +T 
Sbjct: 797  TLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTF 852

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP +N  ++V     ++++  ++         +G    TG    G +             
Sbjct: 853  IPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGGVS------------Y 900

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--------------------- 287
             + G+  +     D   + +TE+P +       E +  +                     
Sbjct: 901  TVTGIIEV----VDDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGKGKGKVK 956

Query: 288  ----VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
                  +     I      SD +    +I L +   A  +   L +   L +      + 
Sbjct: 957  EKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMH 1016

Query: 344  LNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            L        +  T   ILK F   R E   +R + LL         L      +  + E 
Sbjct: 1017 LFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEG 1076

Query: 401  VRIIRFSPNPE----------TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              I+      E                 QR+  ++      D  ++ S    + G+    
Sbjct: 1077 DIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANVGSSDYE 1136

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
             + + AI  L L R+  L  +  R E     ++      +              L     
Sbjct: 1137 YLLSMAIGTLTLERVQQLIAEKGRMENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDS 1196

Query: 511  ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------SHLGYVKRVPLSVYRAQRRGGK 564
                 RR     G     ++    R             S  G      +    A R+   
Sbjct: 1197 MDAEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAPAVPKPAAPRKKPA 1256

Query: 565  GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
            G++ +   +++                         +      +              +L
Sbjct: 1257 GKASLADSEDEDYIAAIPKPAAQKKQPAKKASTQLSDDEDDEVLALKDRLA-----AYNL 1311

Query: 625  NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            +     T +     +E +         +K G  ++           S    +  D  DE 
Sbjct: 1312 DDHSEDTAMETETTEEQAKGKKGRKEPSKRGAAKKA---------ISSLAVISDDEEDET 1362

Query: 685  LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            + ++   +++             F +  + V  GR   
Sbjct: 1363 VPIDEDDEDD-------------FAMEEVPVKKGRGKK 1387


>gi|297521997|ref|ZP_06940383.1| DNA gyrase subunit A [Escherichia coli OP50]
          Length = 177

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 56/208 (26%)

Query: 703 GQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQR 762
           G+ VRF  S++R   G N+ GVRGI L                                 
Sbjct: 3   GKVVRFKESSVRAM-GCNTTGVRGIRL--------------------------------- 28

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
                               G   +     +   E  ILT ++ G+GKRT+  ++   +R
Sbjct: 29  --------------------GEGDKVVSLIVPRGEGAILTATQNGYGKRTAVAEYPTKSR 68

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVI 882
           + KG+ +  V++ N  G +V    V+D DQI++++D GTL+R  V+EI I  R T+GV++
Sbjct: 69  ATKGVISIKVTERN--GLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 126

Query: 883 FSTAKDERVVSVERIRESEIVDEAESTE 910
             TA+DE VV ++R+ E    ++ ++ +
Sbjct: 127 IRTAEDENVVGLQRVAEPVDEEDLDTID 154



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 4/133 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQ 704
           ++ AT++G  +R  ++++   +R+ K  + +   +     +        + I++ T  G 
Sbjct: 46  ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGT 105

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  +S I    GRN+ GV  I  A+ + V+ +  V     + D              +
Sbjct: 106 LVRTRVSEI-SIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEI 164

Query: 765 ISGDTEEITSLKN 777
                 +    + 
Sbjct: 165 APEVDVDDEPEEE 177



 Score = 46.3 bits (108), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 2/147 (1%)

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
            +      +  N +G   ++L   D+++S+     E  IL  T+ G   R  ++      
Sbjct: 8   FKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGEGAILTATQNGYGKRTAVAEY-PTK 66

Query: 718 GRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
            R + GV  I + +    V+    V   D             +    +          + 
Sbjct: 67  SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVIL 126

Query: 777 NDSSVEGNISEERCQELKLKEQFILTV 803
             ++ + N+   +     + E+ + T+
Sbjct: 127 IRTAEDENVVGLQRVAEPVDEEDLDTI 153


>gi|312214411|emb|CBX94403.1| similar to DNA topoisomerase II [Leptosphaeria maculans]
          Length = 1716

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 89/474 (18%), Positives = 169/474 (35%), Gaps = 36/474 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++++   +  ++ +   VK   ++G V G   Y  HG +++   +
Sbjct: 823  RSIPSVIDGLKPGQRKVMYTCFRRNIKKD---VKVIDLAGSVSGTTDY-AHGESSMQGTI 878

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  +  +  +E  GNFGS    G   A+ RY   RL   A  +        + +
Sbjct: 879  VGLAQNFVGTNNINYLEPSGNFGSRLKGGADAASARYIYTRLSPFARRIFHAHDDALLKY 938

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP +     P +L+NG  GI  G ++ IP  N  E++D     I   +   
Sbjct: 939  GES-DGKPIEPEMYIPVLPTILINGSSGIGTGWSSEIPNFNPMEIIDNIR--IRMKEGAT 995

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
               M     P  P      GRT        G       G            ++ VTE+P 
Sbjct: 996  KEDMR----PMVPWYKGFTGRTE-----ELGENRYQFTGTIR----QTGDNEVEVTELPV 1042

Query: 274  QVNKAAMLEKIAELVREKRIVDI-ADLRDESDRQGYRVVIELKRGASADVILNQL---YR 329
            +       EK+ E+++  +      D  D +       +I+++    A  +   L   ++
Sbjct: 1043 RYWTQDFKEKLEEIIKADKTPSFIKDYIDYNTPDRVHFIIKMEDKYMAAALAKGLEEMFK 1102

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA----H 385
                QS  ++     +G   +  T++ I++ F   R     +R ++ L           +
Sbjct: 1103 LFKPQSTTNLVAFDAHGRIHKYATVLDIIEEFYHVRLRYYEKRKQHQLEVMHKELSKMTN 1162

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
                + + +     V +  + +   E  +             K               + 
Sbjct: 1163 QAKFIQMIIDGKLVVSKKKKLALVQELKKLGFTPIPKVDDAKKAGEIDDVQEDEEDTDET 1222

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                S      +L + +  LT    + +  ++     EI     I  S   +  
Sbjct: 1223 EAGASASDYDYLLGMAIWSLTQERVEKLLKQIGEKEEEID--TLIKLSPKDIWN 1274


>gi|268531746|ref|XP_002631000.1| Hypothetical protein CBG02746 [Caenorhabditis briggsae]
          Length = 1506

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 189/510 (37%), Gaps = 53/510 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   
Sbjct: 745  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAELSAYH-HGEVSLMGT 800

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + ++   G FG+    G   A+ RY   +L      +      + + 
Sbjct: 801  IINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDNVLR 860

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   Y+ + + EP   C   P VLVNG  GI  G +TNIP +N  E+V     +I     
Sbjct: 861  FL--YEENQRIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQ 918

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIV 267
                                         Y   RG I+     R   + E    D   + 
Sbjct: 919  KALDP-----------------------WYKNFRGKIIQIDPSRYACYGEVAVLDDNTVE 955

Query: 268  VTEIPYQVNKAAMLEKI-AELVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +TE+P +       EK+   L+   +K+   ++D ++       + V++L  G  A++  
Sbjct: 956  ITELPIKTWTQEYKEKVLESLMESTDKKTPIVSDYKEYHTDTTVKFVVKLSPGKLAELER 1015

Query: 325  N-QLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            +  L+    LQ + +   + L           T   I + F   R+E  ++R        
Sbjct: 1016 SGDLHTVFKLQQVINTTCMVLFDAAGCLRTYTTPEEITQEFFDVRKEKYIQR--KEYMVG 1073

Query: 381  RDRAHVLVGLAIAVANLDEV-VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              +A        A   L ++   II  +    +    L++  ++   +K   +  +    
Sbjct: 1074 VLQAQSKRLTNQARFILAKINNEIIMENKKKASIVETLIKMKFDPDPVKKWKE--EQKLK 1131

Query: 440  TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             +   G + L E   +   E      +      +     S    +     I  S      
Sbjct: 1132 ELRESGEVELDEED-QVDEEGDGEGTSASFTTKVLETRLSDYDYLVGMALIKLSEEEKNK 1190

Query: 500  IIKQELLSVKDELDTPRRTRIVEGLLDMED 529
            +IK+    + +  +  ++T       D+++
Sbjct: 1191 LIKESEDKLAEMKELEKKTWQDLWHEDLDN 1220


>gi|309365103|emb|CAP23826.2| hypothetical protein CBG_02746 [Caenorhabditis briggsae AF16]
          Length = 1482

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 102/510 (20%), Positives = 189/510 (37%), Gaps = 53/510 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF   +     +K+ VK A+++G V  +  YH HG  ++   
Sbjct: 745  ERSIPCLVDGFKPGQRKVLFACFK---RADKREVKVAQLAGAVAELSAYH-HGEVSLMGT 800

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + ++   G FG+    G   A+ RY   +L      +      + + 
Sbjct: 801  IINLAQDYVGSNNINVLLPIGQFGTRLQGGKDSASARYIFTQLSPVTRSVFPANDDNVLR 860

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   Y+ + + EP   C   P VLVNG  GI  G +TNIP +N  E+V     +I     
Sbjct: 861  FL--YEENQRIEPEWYCPIIPMVLVNGAAGIGTGWSTNIPNYNPRELVKNVKKLIAGEAQ 918

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIV 267
                                         Y   RG I+     R   + E    D   + 
Sbjct: 919  KALDP-----------------------WYKNFRGKIIQIDPSRYACYGEVAVLDDNTVE 955

Query: 268  VTEIPYQVNKAAMLEKI-AELVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +TE+P +       EK+   L+   +K+   ++D ++       + V++L  G  A++  
Sbjct: 956  ITELPIKTWTQEYKEKVLESLMESTDKKTPIVSDYKEYHTDTTVKFVVKLSPGKLAELER 1015

Query: 325  N-QLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
            +  L+    LQ + +   + L           T   I + F   R+E  ++R        
Sbjct: 1016 SGDLHTVFKLQQVINTTCMVLFDAAGCLRTYTTPEEITQEFFDVRKEKYIQR--KEYMVG 1073

Query: 381  RDRAHVLVGLAIAVANLDEV-VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              +A        A   L ++   II  +    +    L++  ++   +K   +  +    
Sbjct: 1074 VLQAQSKRLTNQARFILAKINNEIIMENKKKASIVETLIKMKFDPDPVKKWKE--EQKLK 1131

Query: 440  TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             +   G + L E   +   E      +      +     S    +     I  S      
Sbjct: 1132 ELRESGEVELDEED-QVDEEGDGEGTSASFTTKVLETRLSDYDYLVGMALIKLSEEEKNK 1190

Query: 500  IIKQELLSVKDELDTPRRTRIVEGLLDMED 529
            +IK+    + +  +  ++T       D+++
Sbjct: 1191 LIKESEDKLAEMKELEKKTWQDLWHEDLDN 1220


>gi|302844478|ref|XP_002953779.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
 gi|300260887|gb|EFJ45103.1| hypothetical protein VOLCADRAFT_94598 [Volvox carteri f. nagariensis]
          Length = 1126

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/410 (21%), Positives = 159/410 (38%), Gaps = 42/410 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP++ DGLKP  R+I+F   +  ++ +   +K A++S  V     YH HG  ++  
Sbjct: 682  LDRSIPNVLDGLKPGQRKIMFACFKRNLKKD---IKVAQLSAYVAEHSAYH-HGEQSLAS 737

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  +AQD+  S  + L+   G FG+    G   A+ RY   RL+K    L ++     +
Sbjct: 738  TIVNLAQDFVGSNNINLLHPSGQFGTRLQGGKDAASARYIYTRLEKLTRHLFNEHDDVLL 797

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
             +  N +G   EP   L    P VLVNG  GI  G +T IP +N  +++     +++  +
Sbjct: 798  KY-LNEEGQSIEPEWYLPI-LPTVLVNGAEGIGTGWSTFIPNYNPRDIIANLRRLLNGEE 855

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             D          P  P      G       + +G  S V+ G+            I VTE
Sbjct: 856  QD----------PLHPWYRGFTGTITEVP-HKSGSRSYVVGGLVA----QTGPNTIEVTE 900

Query: 271  IPYQVNKAAMLEKIAELVR---EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ- 326
            +P +       E +  L+R   +     IAD  +         V+EL  G   +++    
Sbjct: 901  LPVRKWTQDYKEFLETLLRPQDKDEAPLIADYHEHHSDSNVHFVVELLPGKLDELLATPG 960

Query: 327  -LYRYTSLQSLFSVNMVALNGYKPERFTLIG---ILKAFVAFREEVVVRRTKYLLNKARD 382
             L     LQ+  + + + L               I+  F   R +   +R   +L  A+ 
Sbjct: 961  GLEAKFKLQAKVTTSNMMLFQKDGIIKHYQSPEAIIAEFFELRLDYYEKRRIAMLRFAQM 1020

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                      A   +  ++ ++         +R  +++   A     +  
Sbjct: 1021 DQ------MRADNKVRFILAVVHGKLEVRNRKRVDIEKDLEAQGFDRMSK 1064


>gi|125583360|gb|EAZ24291.1| hypothetical protein OsJ_08043 [Oryza sativa Japonica Group]
          Length = 1487

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 128/758 (16%), Positives = 231/758 (30%), Gaps = 106/758 (13%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +      +K A+ S
Sbjct: 644  IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVKE---IKVAQFS 699

Query: 79   GEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
            G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 700  GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 758

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
              L      +         D   NY   DG   EP       P VLVNG  GI  G +T 
Sbjct: 759  TLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTF 814

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP +N  ++V     ++++  ++         +G    TG    G +             
Sbjct: 815  IPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGGVS------------Y 862

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL--------------------- 287
             + G+  +     D   + +TE+P +       E +  +                     
Sbjct: 863  TVTGIIEV----VDDTTLRITELPIRRWSQDYKEFLISIGGTDKSKDKDKDKGKGKGKVK 918

Query: 288  ----VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVA 343
                  +     I      SD +    +I L +   A  +   L +   L +      + 
Sbjct: 919  EKEKKEKDIEPFIEAFDTYSDDKNVEFLITLSKENMAIALQEGLEKKFKLTTTIGTTNMH 978

Query: 344  LNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
            L        +  T   ILK F   R E   +R + LL         L      +  + E 
Sbjct: 979  LFDSNGKIRKYDTPEDILKEFFGLRLEFYEKRKRVLLENIELELKKLSNKVRFILAVVEG 1038

Query: 401  VRIIRFSPNPE----------TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
              I+      E                 QR+  ++      D  ++ S    + G+    
Sbjct: 1039 DIIVNNRKRAELFVELKQKGFDPFPRKKQRAGPSAVGAIEEDEENEESPEAANVGSSDYE 1098

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
             + + AI  L L R+  L  +  R E     ++      +              L     
Sbjct: 1099 YLLSMAIGTLTLERVQQLIAEKGRMENEVAELKRTRPKSLWMRDLDAFEKELDALDEKDS 1158

Query: 511  ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTV------SHLGYVKRVPLSVYRAQRRGGK 564
                 RR     G     ++    R             S  G      +    A R+   
Sbjct: 1159 MDAEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAPAVPKPAAPRKKPA 1218

Query: 565  GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
            G++ +   +++                         +      +              +L
Sbjct: 1219 GKASLADSEDEDYIAAIPKPAAQKKQPAKKASTQLSDDEDDEVLALKDRLA-----AYNL 1273

Query: 625  NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            +     T +     +E +         +K G  ++           S    +  D  DE 
Sbjct: 1274 DDHSEDTAMETETTEEQAKGKKGRKEPSKRGAAKKA---------ISSLAVISDDEEDET 1324

Query: 685  LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
            + ++   +++             F +  + V  GR   
Sbjct: 1325 VPIDEDDEDD-------------FAMEEVPVKKGRGKK 1349


>gi|255519785|ref|ZP_05387022.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175]
          Length = 288

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 16/260 (6%)

Query: 648 VVFATKHGNVRRNKLSDFIQI--NRSGKIAMKL--DSRDEILSVET----CTQENDILLT 699
           ++F T  G V R+K  +  +      G   + L      E ++        T ++ +  T
Sbjct: 3   LLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFT 62

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           TK G   R  +S       R S G+R + L + D++IS   V   D   +  I      S
Sbjct: 63  TKHGVVKRTTLSQFAKI--RQS-GLRAVELRENDELIS---VQMTDGSKNMIIATKHGQS 116

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
                 +      T+            E    E+   ++ +L V+EKG+GK+T +  + +
Sbjct: 117 IYFPEENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPL 176

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
            NR G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  G
Sbjct: 177 RNRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMG 234

Query: 880 VVIFSTAKDERVVSVERIRE 899
           V +    +DE+V +V ++ +
Sbjct: 235 VKLIRLDEDEKVATVAKVPK 254



 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/258 (25%), Positives = 120/258 (46%), Gaps = 6/258 (2%)

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
            ++LFF++ G VY+ K + +P     A+G  +IN+L +   E++  ++   E     ++ 
Sbjct: 1   DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFT---DDS 57

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCV 706
           Y+ F TKHG V+R  LS F +I +SG  A++L   DE++SV+      ++++ TK GQ +
Sbjct: 58  YLFFTTKHGVVKRTTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSI 117

Query: 707 RFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLIS 766
            FP   IRV  GR + GVRGI L + D+VI M ++   +             +   +   
Sbjct: 118 YFPEENIRVM-GRTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPL 176

Query: 767 GDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            +   +       + +             ++  ++TVS  G   R        + RS  G
Sbjct: 177 RNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVS--GVLIRFEIDTVSQTGRSAMG 234

Query: 827 IRATDVSKINEIGALVAV 844
           ++   + +  ++  +  V
Sbjct: 235 VKLIRLDEDEKVATVAKV 252



 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 102/249 (40%), Gaps = 17/249 (6%)

Query: 533 IVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFF 592
              +  +   +  G VKR  LS +   R+ G     V +R+ D +  + +     +++  
Sbjct: 53  FTDDSYLFFTTKHGVVKRTTLSQFAKIRQSG--LRAVELRENDELISVQMTDGSKNMIIA 110

Query: 593 SSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFAT 652
           +  G         + +    A   A +  + L + + +  +          ++  V+  T
Sbjct: 111 TKHGQSIYFPEENIRVMGRTA---AGVRGIRLREDDEVIGMEVLE------DDEKVLVVT 161

Query: 653 KHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLTTKLGQCVRF 708
           + G  ++   S +  +   G + +K     +    +++++T T E D++L T  G  +RF
Sbjct: 162 EKGYGKQTPASQYP-LRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRF 220

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
            I  +    GR+++GV+ I L + ++V ++A V   + + +      + +  Q    S +
Sbjct: 221 EIDTV-SQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLITQVPDESFE 279

Query: 769 TEEITSLKN 777
               + ++ 
Sbjct: 280 DAPGSDIEE 288



 Score = 38.2 bits (87), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERIRESEIVDEA 906
           D ++  ++ G + R    E+    R  KG+ I +       E+V +V  I  SE  D++
Sbjct: 1   DTLLFFTNTGKVYRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAV--INLSEFTDDS 57


>gi|238695150|ref|YP_002922344.1| topoisomerase medium subunit [Enterobacteria phage JSE]
 gi|220029286|gb|ACL78221.1| topoisomerase medium subunit [Enterobacteria phage JSE]
          Length = 454

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 183/480 (38%), Gaps = 53/480 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K A I  
Sbjct: 15  SLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGS 74

Query: 80  EV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            V  +G YH HG     +A + MA  WS    L++GQGNFGS       A RY   R+  
Sbjct: 75  GVAELG-YH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARV-- 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             H     + KD ++  P ++     P    L    P VL NG  GIA G  T+I  H+L
Sbjct: 131 --HENFFKIYKD-MNCAPKHEDLEHIPPAFYLPV-VPMVLANGISGIATGYKTDILPHSL 186

Query: 196 GEVVDGC-VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             +++   +A+    D +         G   P                  R  +++ G  
Sbjct: 187 ESLIECTELALAGKLDKEPSVQFPKFTGKVIP---------------RDDRDGVILEGTY 231

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +      + ++ ++E+PY   K    E +A L   +    I    D   + G+R  + L
Sbjct: 232 EL----NGKTKLTISEVPY---KFDREEYVAVLDALEEKDLIVSYNDRCSKDGFRFEVTL 284

Query: 315 KRGASADVI----LNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEV 368
           KR             Q+ +   L  L + N+V +N             +++ FV  R   
Sbjct: 285 KRDYFKSEDESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKASDLIRRFVEIRLGY 344

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V +R + +      +A  L     A+A  + + R+I+     +  ++  + +S N     
Sbjct: 345 VDKRIELM------QAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKAEVMQSINGH--- 395

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              + +   +  + S     +++ +   +++      +          +     ++KE  
Sbjct: 396 ---EKLRPYADKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTAMKEYKKDLKELK 452


>gi|194761210|ref|XP_001962822.1| GF15632 [Drosophila ananassae]
 gi|190616519|gb|EDV32043.1| GF15632 [Drosophila ananassae]
          Length = 1456

 Score =  172 bits (435), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 96/413 (23%), Positives = 162/413 (39%), Gaps = 41/413 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 696  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 751

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    ++
Sbjct: 752  IVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIFHPLDDPLLE 811

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++   DG   EP+  L    P VLVNG  GI  G AT I  HN  E++     +I++ + 
Sbjct: 812  YQ-TDDGQRIEPLWYLPI-IPMVLVNGAEGIGTGWATKIANHNPREIMKNLRRMINSEE- 868

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                          P      GR    +           R V          +++ +TE+
Sbjct: 869  ---------PVAMHPWYKNFAGRMEYVSD---------GRYVHTGNIQILPGDRVEITEL 910

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ-- 326
            P  V      E + E +     K    +++ R+       R V+    G    +      
Sbjct: 911  PVGVWTQNYKENVLEALANGTEKVKAVVSEYREYHTDTTVRFVVSFAPGEFNRIRSEDGG 970

Query: 327  ---LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
               +++ TS  S   ++    N       T + +LK F   R E   RR  YL+ +   +
Sbjct: 971  FYRVFKLTSSLSTNQMHAFDQNNCLRRFPTTMDVLKEFYKLRLEYYARRKDYLVGQLTAQ 1030

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
            A  L   A  +    E   ++      +    EL++R +    +K+    I  
Sbjct: 1031 ADRLSDQARFILEKCEKTLVVEN-KQRKAMCDELVKRGYRPDPVKEWQRRIKM 1082


>gi|1212749|emb|CAA65085.1| Topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 64/93 (68%), Gaps = 3/93 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDT 150
            D DP   AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna
          Length = 759

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 249 LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 304

Query: 76  RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
           +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 305 QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 363

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
           Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 364 YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 421

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 422 YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 466

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
            + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 467 RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 521

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 522 NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 581

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 582 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 629

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 630 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 686

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDE 511
              ++  +   LLG+    L   + +
Sbjct: 687 GPEELYGTYEYLLGMRIWSLTKERYQ 712


>gi|33620672|ref|NP_891840.1| topoisomerase medium subunit [Enterobacteria phage RB49]
 gi|33438555|gb|AAL15130.2| topoisomerase medium subunit [Enterobacteria phage RB49]
          Length = 454

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/480 (22%), Positives = 183/480 (38%), Gaps = 53/480 (11%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           S+   + N    YAI     R IP L DGLKPV R ++   +Q      KK+ K A I  
Sbjct: 15  SLESIVHNEAKEYAIYSAEERGIPQLVDGLKPVQRFVMECALQKSKGDRKKFRKMADIGS 74

Query: 80  EV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
            V  +G YH HG     +A + MA  WS    L++GQGNFGS       A RY   R+  
Sbjct: 75  GVAELG-YH-HGETNAVEAGSLMANTWSNNTPLLDGQGNFGSRLVQKAGAARYIFARV-- 130

Query: 138 AAHFLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
             H     + KD ++  P ++     P    L    P VL NG  GIA G  T+I  H+L
Sbjct: 131 --HENFFKIYKD-MNCAPKHEDLEHIPPAFYLPV-VPMVLANGISGIATGYKTDILPHSL 186

Query: 196 GEVVDGC-VAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
             +++   +A+    D +         G   P                  R  +++ G  
Sbjct: 187 ESLIECTELALAGKLDKEPSVQFPKFTGKVIP---------------RDDRDGVILEGTY 231

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            +      + ++ ++E+PY   K    E +A L   +    I    D   + G+R  + L
Sbjct: 232 EL----NGKTKLTISEVPY---KFDREEYVAVLDALEEKDLIVSYNDRCSKDGFRFEVTL 284

Query: 315 KRGASADVI----LNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEV 368
           KR             Q+ +   L  L + N+V +N             +++ FV  R   
Sbjct: 285 KRDYFKSEDESARHEQIMKDFKLTQLVAQNIVVVNERGLVEVFEKASDLIRRFVEIRLGY 344

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           V +R + +      +A  L     A+A  + + R+I+     +  ++  + +S N     
Sbjct: 345 VDKRIELM------QAETLEAYNYAMAKAEFIDRVIKGEIELQGKKKSEVMQSINGH--- 395

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              + +   +  + S     +++ +   +++      +          +     ++KE  
Sbjct: 396 ---EKLRPYADKLVSMPLYSVTQEEYDRLVKDADKHHSEYEYWTKTTAMKEYKKDLKELK 452


>gi|255553522|ref|XP_002517802.1| DNA topoisomerase II, putative [Ricinus communis]
 gi|223543074|gb|EEF44609.1| DNA topoisomerase II, putative [Ricinus communis]
          Length = 1212

 Score =  171 bits (434), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 142/368 (38%), Gaps = 37/368 (10%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
           L R+IP + DGLKP  R+ILF   +  +  +   +K  ++ G V  +  YH HG  ++  
Sbjct: 409 LQRSIPSMVDGLKPAQRKILFSCFKRNLVKD---LKVVQLQGYVSEQSAYH-HGEQSLQS 464

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQ++  S  + L+  +G FG+    G   A+ RY    L     FL        +
Sbjct: 465 TIVGMAQNFVGSNNINLLAPKGQFGTRCSGGKDHASPRYIYTCLSPITRFLFPKDDDCLL 524

Query: 152 DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           D+    DG   EP       P VLVNG  GI  G +T IP +N  ++V      ++   +
Sbjct: 525 DYLQE-DGLSIEPTWYAPIIPLVLVNGCEGIGTGWSTFIPNYNPRDIVANLRRFLNGEKM 583

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
           +          P  P      G    K+A   G GS  + G+        +   + +TE+
Sbjct: 584 E----------PMHPWYKGFKGTIE-KSASKEGGGSYAVNGIIE----EVNETTVRITEL 628

Query: 272 PYQVNKAAMLEKIAELVREKRIV--------DIADLRDESDRQGYRVVIELKRGASADVI 323
           P +       + +  ++   R           I D R   D       + L       V 
Sbjct: 629 PIRRWTDEYKDFLNSVIENVRDEKGNLPKDAFIKDFRKYGDDVSVCFEVLLSEEKMKQVK 688

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKA 380
              L +   L +  S + + L   K    +  +   IL+ FV  R E+  +R  + L   
Sbjct: 689 DEGLLKKFKLATTISTSNMHLFDPKGVIKKYDSPEEILEEFVHLRFELYEKRKNFKLASL 748

Query: 381 RDRAHVLV 388
              A +L 
Sbjct: 749 EMEALILE 756


>gi|195164670|ref|XP_002023169.1| GL21103 [Drosophila persimilis]
 gi|194105254|gb|EDW27297.1| GL21103 [Drosophila persimilis]
          Length = 1451

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 106/506 (20%), Positives = 185/506 (36%), Gaps = 42/506 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 691  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 746

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    ++
Sbjct: 747  IVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLE 806

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++   DG   EP+  L    P VLVNG  GI  G +T I  +N  E+      +I+  + 
Sbjct: 807  YQ-TDDGQRIEPLWYLPI-IPMVLVNGAEGIGTGWSTKIANYNPREITRNLRRMINEEE- 863

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      GR    +           R V          E++ +TE+
Sbjct: 864  ---------PLPMHPWYKNFTGRMEYISD---------GRYVHTGNIQILPGERVEITEL 905

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ-- 326
            P  V      E + E +     K    +++ R+       R VI    G    +      
Sbjct: 906  PIGVWTQNYKENVLEALSNGTEKVKAIVSEYREYHTDTTVRFVISFAPGEFRRIQSEDGG 965

Query: 327  LYRYTSLQSLFSVNMV---ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             YR   L S  S+N +     N       +   +LK F   R E   RR +YL+ +    
Sbjct: 966  FYRVFKLSSTLSINQMHAFDQNNCLRRYASSTDVLKEFYQLRVEYYGRRKEYLVGQLTAL 1025

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            A  L   A  +    E   ++      +    EL +R +    +K+    I        +
Sbjct: 1026 ADRLSDQARFILEKCEKTLVVEN-KQRKAMCDELTKRGYRPDPVKEWQRRIKMEDAEPEN 1084

Query: 444  DGTMYLSEVQTRAILELR-LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +        Q       + + +     +   +         +      + +  +   ++K
Sbjct: 1085 EEEEDEEGEQAAPSSSKKDVKKEVDPDKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLK 1144

Query: 503  QELLSVKDELDTPRRTRIVEGLLDME 528
            Q    + +  +  +RT     L D++
Sbjct: 1145 QRDYKLSELDNLRKRTPHQLWLDDLD 1170


>gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202
 gi|157830349|pdb|1BJT|A Chain A, Topoisomerase Ii Residues 409-1201
          Length = 793

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 259 LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 314

Query: 76  RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
           +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 315 QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 373

Query: 130 YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
           Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 374 YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 431

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 432 YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 476

Query: 249 VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
            + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 477 RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 531

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
             + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 532 NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 591

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
             +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 592 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 639

Query: 427 IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
           I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 640 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 696

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDE 511
              ++  +   LLG+    L   + +
Sbjct: 697 GPEELYGTYEYLLGMRIWSLTKERYQ 722


>gi|27542585|gb|AAO16893.1| DNA gyrase A subunit [Salmonella enterica subsp. enterica serovar
           Gallinarum]
          Length = 76

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 48/76 (63%), Positives = 60/76 (78%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE
Sbjct: 1   KSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGK 148
            RL K AH L+ DL K
Sbjct: 61  IRLAKIAHELMADLEK 76


>gi|313760374|emb|CBY65971.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 79

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 54/79 (68%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           R+L+ M   G   ++ + K AR   E MG YHPHG+A+IY +L RMAQ WSLR  L++GQ
Sbjct: 1   RVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYASLVRMAQPWSLRYPLVDGQ 60

Query: 115 GNFGSVDGDPPAAERYTEC 133
           GNFGS   DPPAA RYTE 
Sbjct: 61  GNFGSPGNDPPAAMRYTEA 79


>gi|145480573|ref|XP_001426309.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393383|emb|CAK58911.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1196

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 100/511 (19%), Positives = 193/511 (37%), Gaps = 48/511 (9%)

Query: 33  AINVILG--RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPH 88
           A++ I    R+IP   DGLKP  R+I+  +    +  +K+  K + +SG V    +YH H
Sbjct: 356 AMHSISDNLRSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSLSGLVTTYAQYH-H 410

Query: 89  GNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLD 144
           G  ++   +  MAQ++  S  + L+   G FG  S+ G   A  RY   +L      L +
Sbjct: 411 GEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYISTKLSSLTTKLFN 470

Query: 145 DLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVA 204
           +    T+++    +G   EP       P VL+NG  GI  G +T +P  N  E+      
Sbjct: 471 EDDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPNFNPREICQQIKR 529

Query: 205 VIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            +   + +   L+   +G    TG++             G    + +G     K      
Sbjct: 530 KLRGEEFE--ELVPWYKG---FTGSIT-----------AGTNQYIAKGSFIQHK-----N 568

Query: 265 QIVVTEIPYQVNK---AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
            + +TEIP + +     A ++   E+   K   +I D+++     G +V  ELK     +
Sbjct: 569 HLYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDMKEY--HAGNKVCFELKVTD--E 624

Query: 322 VILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
           V+   + +Y  LQ+  ++  + L   K        + +    F +  +     Y L K  
Sbjct: 625 VLKQDIEKYFKLQTTIAMTNLVLFNEKGLLKRYSNVSEILDEFYQTRIKF---YQLRKEY 681

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
             +     L +  +    +  +I  S      ++  M +   +   K +  +    S  I
Sbjct: 682 LLSKYQNELELVQSKSKFIEGMIDNSIQLRGLKKMEMCKKLQSLGFKGISKMEKVKSTRI 741

Query: 442 GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGII 501
             D      E Q   +L + +   +       + ++  L  +I        +  ++    
Sbjct: 742 SKDFDADNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQITALN--KKTPQQIWSED 799

Query: 502 KQELLSVKDELDTPRRTRIVEGLLDMEDEDC 532
             E L    +++    T+ +   ++   E  
Sbjct: 800 LDEFLEELTKVEEQ-ETQEMIKRVEKNAEKL 829


>gi|51467892|ref|NP_001003834.1| DNA topoisomerase 2-alpha [Danio rerio]
 gi|49619131|gb|AAT68150.1| topoisomerase 2 [Danio rerio]
          Length = 1574

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 96/491 (19%), Positives = 186/491 (37%), Gaps = 35/491 (7%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 711  ERSIPCMVDGLKPGQRKVVFCCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLMMT 766

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   +  + + 
Sbjct: 767  IVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVDDNLLK 826

Query: 153  FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            +  NYD   + EP   +    P VL NGG GI  G A+ IP +++ E+++       +  
Sbjct: 827  Y--NYDDYLRVEPEWYMPI-IPLVLANGGEGIGTGWASRIPKYDVREIIN-----NIHRM 878

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            I+ +  + ++  P +      +           G  +I+      I +            
Sbjct: 879  INGEEPLPMVNLPSYKGFKGTIDELAKNQYVNNGEVAIIDSTTIEITELPVKTW------ 932

Query: 271  IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
             P    K  +LE +     EK    I D ++       R V+++      +     L++ 
Sbjct: 933  TPGLTYKENVLEVMLNGT-EKVPALITDYKEYHTDTTVRFVVKMTEERLREAEAAGLHKV 991

Query: 331  TSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              LQ+L + N + L  +     +  ++  ILK F   R +  V R  +L+      +  L
Sbjct: 992  FKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGMLGAESAKL 1051

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA---SDIKDLIDLIDDSSYTIGSD 444
               A  +    +   +I   P  E  R        +    +         ++ +      
Sbjct: 1052 SNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPVKAWKDAQEKEEEEDAEDDDEK 1111

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                 S      +L + +  LT   +D++  + ++   E+      + + + L       
Sbjct: 1112 EKEDTSGPDYNYLLSMPMWYLTKEKKDELCKQRDAKMTELNTLK--MKAPADLWKEDLAA 1169

Query: 505  LLSVKDELDTP 515
                 + ++  
Sbjct: 1170 FTEELERVEQK 1180


>gi|26984133|gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum]
 gi|26984168|gb|AAN85208.1| DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 93/489 (19%), Positives = 178/489 (36%), Gaps = 45/489 (9%)

Query: 26   QNSYLTYAINV----IL------GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  Y++Y   V    IL       R+IP + DGLKP  R+ILF   +          K +
Sbjct: 668  KEKYISYTEFVNKELILFSMADLQRSIPSMLDGLKPGQRKILFCAFKRNFVKEA---KVS 724

Query: 76   RISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAER 129
            + SG V     YH HG  ++   +  MAQD+  S  + L++  G FG  ++ G   A+ R
Sbjct: 725  QFSGYVSEHSAYH-HGEQSLSSTIIGMAQDYVGSNNVNLLQPNGQFGTRNMGGKDHASSR 783

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   RL   A FL         D+  N DG + EP       P VL+NG  GI  G ++ 
Sbjct: 784  YIYTRLSPIARFLFPKEDDTIHDY-LNEDGQYIEPTWYVPIVPMVLINGSEGIGTGWSSY 842

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            +P +N  ++V     ++++  ++        +G             G          +  
Sbjct: 843  VPNYNPRDLVANVRRLLNDEPMEPMDP--WYKGFKGTIEKTATKEAG---------ATYT 891

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REK-RIVDIADLRDESDRQ 306
            + G+        +   + ++E+P +       + +  +    +K +   I ++R   D  
Sbjct: 892  VTGIIE----EVNETTLRISELPVRRWTEDYKQFLESMTVSNDKAKDPFIKEVRAYGDEN 947

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVA 363
                 + +            L +   L +  S + + L   NG   +      IL+ F  
Sbjct: 948  SVCFEVIMSEENLILAQQEGLLKKFKLATTISTSNMHLFDSNGKIKKYDNPEDILEEFYH 1007

Query: 364  FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE---TARRELMQR 420
             R E   +R K LL         +      +  + +V  I+      +     + +    
Sbjct: 1008 VRLEYYEKRKKALLEILELELLRIENKVKFILGVVKVEIIVNNRKRADLLLELKEKGFTP 1067

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                  ++ ++    D +     +    +       +L + +  LT     ++  E + L
Sbjct: 1068 FPKKKAVEAVVADTSDDAEDSEEELNRGVRAGDYDYLLSMPIGTLTLEKVQELCAERDQL 1127

Query: 481  GIEIKECLD 489
              E+++  +
Sbjct: 1128 NGEVEDMRN 1136


>gi|198473349|ref|XP_001356262.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
 gi|198139416|gb|EAL33325.2| GA10169 [Drosophila pseudoobscura pseudoobscura]
          Length = 1450

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 106/506 (20%), Positives = 185/506 (36%), Gaps = 42/506 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 691  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 746

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    ++
Sbjct: 747  IVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLE 806

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++   DG   EP+  L    P VLVNG  GI  G +T I  +N  E+      +I+  + 
Sbjct: 807  YQ-TDDGQRIEPLWYLPI-IPMVLVNGAEGIGTGWSTKIANYNPREITRNLRRMINEEE- 863

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      GR    +           R V          E++ +TE+
Sbjct: 864  ---------PLPMHPWYKNFTGRMEYISD---------GRYVHTGNIQILPGERVEITEL 905

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ-- 326
            P  V      E + E +     K    +++ R+       R VI    G    +      
Sbjct: 906  PIGVWTQNYKENVLEALSNGTEKVKAIVSEYREYHTDTTVRFVISFAPGEFRRIQSEDGG 965

Query: 327  LYRYTSLQSLFSVNMV---ALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             YR   L S  S+N +     N       +   +LK F   R E   RR +YL+ +    
Sbjct: 966  FYRVFKLSSTLSINQMHAFDQNNCLRRYASSTDVLKEFYQLRVEYYGRRKEYLVGQLTAL 1025

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            A  L   A  +    E   ++      +    EL +R +    +K+    I        +
Sbjct: 1026 ADRLSDQARFILEKCEKTLVVEN-KQRKAMCDELTKRGYRPDPVKEWQRRIKMEDAEPEN 1084

Query: 444  DGTMYLSEVQTRAILELR-LARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +        Q       + + +     +   +         +      + +  +   ++K
Sbjct: 1085 EEEEDEEGEQAAPSSSKKDVKKEVDPDKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLK 1144

Query: 503  QELLSVKDELDTPRRTRIVEGLLDME 528
            Q    + +  +  +RT     L D++
Sbjct: 1145 QRDYKLSELDNLRKRTPHQLWLDDLD 1170


>gi|124108799|gb|ABM90976.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 74

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 46/74 (62%), Positives = 61/74 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDGD 123
           L++GQGNFGS+DGD
Sbjct: 61  LVDGQGNFGSIDGD 74


>gi|168997715|gb|ACA42555.1| topoisomerase IV [Escherichia coli]
          Length = 88

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 3/89 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAAHFLLD 144
           G+ D DP   AA RYTE RL K +  LL 
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYSELLLS 88


>gi|66814704|ref|XP_641531.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|166210410|sp|P90520|TOP2M_DICDI RecName: Full=DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
 gi|60469558|gb|EAL67548.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1284

 Score =  171 bits (433), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 167/417 (40%), Gaps = 46/417 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  ++  D +    + Y+    L R+IP L DGLKP  R+ILF   +  +      +
Sbjct: 782  DHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNE---I 837

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K +++SG V  +  YH HG  ++   + +MA ++  S  L L+   G FG+    G   A
Sbjct: 838  KVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSA 896

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE---PVVLCARYPNVLVNGGGGIA 183
            + RY   +L+  A +L ++L     D   NY     E   P       P +LVNG  GI 
Sbjct: 897  SARYIFTKLEPVARYLFNELD----DPLLNYLEEEGESIQPDYYIPIIPMLLVNGSEGIG 952

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
            VGM+T+IP  +  +++D  + +  N  + L  L+   RG               ++ Y T
Sbjct: 953  VGMSTSIPLFSPIDIID-QLMLRLNNQVALKKLIPWYRGFKGTISPD-------RHTYRT 1004

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
              G I + G             + +TE+P     +   E + +L+ +  I    +   E+
Sbjct: 1005 -NGVIKLVGR-----------NLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQESNTEN 1052

Query: 304  DRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGIL 358
                    I L         D+  N+L +   L +  + ++   +      +  ++  I+
Sbjct: 1053 S---VHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEII 1109

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
              F   R +   +R +YLL    ++   L      +  +      I+     +  + 
Sbjct: 1110 DQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKE 1166


>gi|302826295|ref|XP_002994651.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
 gi|300137231|gb|EFJ04283.1| hypothetical protein SELMODRAFT_138946 [Selaginella moellendorffii]
          Length = 980

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 96/493 (19%), Positives = 173/493 (35%), Gaps = 48/493 (9%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
           L R++P + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 511 LARSVPSMVDGLKPGQRKILFAAFKRNFTSQA---KVAQFSGYVSEHSAYH-HGEQSLAS 566

Query: 96  ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  MAQ++  S  + ++   G FG  S  G   A+ RY    L      +         
Sbjct: 567 TIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTSLTPLTRTIFPKPD---- 622

Query: 152 DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D   N+   DG   EP       P VLVNG  GI  G +T +P +N  ++V     ++ +
Sbjct: 623 DILLNFLREDGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRD 682

Query: 209 PDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
             ++      +  +G    + +   G +              + G+        +   I 
Sbjct: 683 EPLEPMDPWYKGFKGTIVKSASKESGVS------------YTVTGIVE----QVNETTIR 726

Query: 268 VTEIPYQVNKAAMLEKIAEL---VREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
           V E+P +       E +  L     + +   I D R+ +        I L     A+ + 
Sbjct: 727 VLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFEISLSEEKMAEALA 786

Query: 325 NQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
             L +   L +  S + + L   +G+  +  T   IL+ F   R E+ V+R +  +   +
Sbjct: 787 EGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLELYVKRKEVQVENLQ 846

Query: 382 DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL--IDDSSY 439
                L      +  + +   ++      E       +            DL  +     
Sbjct: 847 YELLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKAKASDLPVVGGDGS 906

Query: 440 TIGSDGTMYLSE----VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
            + +D    L++         +L + +  LT      + NE + L  +++E      +  
Sbjct: 907 DVEADDEEKLNKGVRAGDYEYLLSMPIGTLTLEKVQQLCNERDKLEGDVEELK--KCTPK 964

Query: 496 RLLGIIKQELLSV 508
            L        L  
Sbjct: 965 DLWEKDLDNFLEQ 977


>gi|315613996|gb|ADU52598.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 80

 Score =  171 bits (432), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/80 (56%), Positives = 60/80 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           L+ M ++   WN  Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGN
Sbjct: 1   LYAMHELKNNWNAAYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGN 60

Query: 117 FGSVDGDPPAAERYTECRLQ 136
           FGSVDG   AA RYTE R+ 
Sbjct: 61  FGSVDGLAAAAMRYTEIRMA 80


>gi|194879545|ref|XP_001974253.1| GG21630 [Drosophila erecta]
 gi|190657440|gb|EDV54653.1| GG21630 [Drosophila erecta]
          Length = 1446

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 101/415 (24%), Positives = 164/415 (39%), Gaps = 41/415 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  +  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++ + DG   EP   L    P VLVNG  GI  G +T I  HN  E++     +I+  + 
Sbjct: 808  YQVD-DGQKIEPQWYLPI-IPMVLVNGAEGIGTGWSTKISNHNPREIMSNLRKMINGEEP 865

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             +            P      GR    +      G  V  G   I        +  +TE+
Sbjct: 866  KVMH----------PWYKNFTGRMEYVSD-----GRYVQTGNIQILP----GNRAEITEL 906

Query: 272  PYQVNKAAMLEKIAE-LVR--EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ-- 326
            P  V      E + E L    EK    I+D R+       R VI    G    +      
Sbjct: 907  PVGVWTQNYKENVLEPLANGTEKVKAIISDYREYHTDTTVRFVISFAPGEFERIQAEDGG 966

Query: 327  ---LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
               +++ T+  S   ++    N       T I ILK F   R E   RR  +L+ +   +
Sbjct: 967  FYRVFKLTTTLSTNQMHAFDHNNCLRRFPTAIDILKEFYELRREYYARRKDFLVGQLTAQ 1026

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            A  L   A  +       +++  +   +    EL++R +    +K+    I    
Sbjct: 1027 ADRLSDQARFI-VEKCDKKLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMED 1080


>gi|202073599|gb|ACH96270.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044]
 gi|202073601|gb|ACH96271.1| DNA gyrase subunit A [Waddlia chondrophila]
          Length = 82

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 47/82 (57%), Positives = 57/82 (69%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KP  RRIL+ M  + +    K+ KCA+ISG+  G +HPHG   IY  L RMAQ W +R  
Sbjct: 1   KPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGDFHPHGEQVIYPTLVRMAQPWMMRYR 60

Query: 110 LIEGQGNFGSVDGDPPAAERYT 131
           L++GQGNFGSVDGDPPAA RYT
Sbjct: 61  LVDGQGNFGSVDGDPPAAMRYT 82


>gi|312069494|ref|XP_003137708.1| TOPoisomerase family member [Loa loa]
 gi|307767126|gb|EFO26360.1| TOPoisomerase family member [Loa loa]
          Length = 1485

 Score =  171 bits (432), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 90/417 (21%), Positives = 163/417 (39%), Gaps = 39/417 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   
Sbjct: 761  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMST 816

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   + ++ + 
Sbjct: 817  IVNLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTRALFPIVDENVLR 876

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   ++ + + EP   C   P VLVNG  GI    +T IP +N  E+VD    +I   + 
Sbjct: 877  FL--FEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKIPNYNPREIVDNMRRLIRGEE- 933

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                          P      G     +           R +   E      + I +TE+
Sbjct: 934  ---------PKSLTPWFKNFRGTIEKLDD---------SRYICSGEIALLSDDTIEITEL 975

Query: 272  PYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E + E +    +K+   I D ++       + V+++      +  +  L+
Sbjct: 976  PIRTWTQNYKETVLEPMLEGSDKQPPLIQDFKEYHTDTTVKFVVKMNAAKLREAEMEGLH 1035

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQS  +++ + L               I K F   R++  + R  +     R ++ 
Sbjct: 1036 KIFKLQSAINISSMVLFDPLGCLRRFPNVEEICKEFFEIRKKKYIERKAFQEGMLRAQSE 1095

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
             L   A  +    +   +I           +L+++ ++   +K   +L       + 
Sbjct: 1096 RLSNQARFILEKIKGEILIENKRKVAIV-EQLVKKGFDPDPVKRWKELQRKRELEMT 1151


>gi|302812673|ref|XP_002988023.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
 gi|300144129|gb|EFJ10815.1| hypothetical protein SELMODRAFT_127267 [Selaginella moellendorffii]
          Length = 1151

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 97/492 (19%), Positives = 172/492 (34%), Gaps = 46/492 (9%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R++P + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 682  LARSVPSMVDGLKPGQRKILFAAFKRNFTSQA---KVAQFSGYVSEHSAYH-HGEQSLAS 737

Query: 96   ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  + ++   G FG  S  G   A+ RY    L      +         
Sbjct: 738  TIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTSLTPLTRTIFPKPD---- 793

Query: 152  DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            D   N+   DG   EP       P VLVNG  GI  G +T +P +N  ++V     ++ +
Sbjct: 794  DILLNFLREDGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRD 853

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
              ++        +G            +G+         S  + G+        +   I V
Sbjct: 854  EQLEPMDP--WYKGFKGTIVKSATKESGV---------SYTVTGIVE----QVNETTIRV 898

Query: 269  TEIPYQVNKAAMLEKIAEL---VREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
             E+P +       E +  L     + +   I D R+ +        I L     A+ +  
Sbjct: 899  LELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFEISLSEEKMAEALAE 958

Query: 326  QLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             L +   L +  S + + L   +G+  +  T   IL+ F   R E+ V+R +  +   + 
Sbjct: 959  GLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLELYVKRKEVQVENLQY 1018

Query: 383  RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL--IDDSSYT 440
                L      +  + +   ++      E       +            DL  +      
Sbjct: 1019 ELLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKAKASDLPVVGGDGSD 1078

Query: 441  IGSDGTMYLSE----VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
            + +D    L++         +L + +  LT      + NE + L  +++E      +   
Sbjct: 1079 VEADDEEKLNKGVRAGDYEYLLSMPIGTLTLEKVQQLCNERDKLEGDVEELK--KCTPKD 1136

Query: 497  LLGIIKQELLSV 508
            L        L  
Sbjct: 1137 LWEKDLDNFLEQ 1148


>gi|332027283|gb|EGI67367.1| DNA topoisomerase 2 [Acromyrmex echinatior]
          Length = 1552

 Score =  170 bits (431), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 98/502 (19%), Positives = 186/502 (37%), Gaps = 45/502 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK    VS +D +    + Y+    + R+IP++ DG KP  R++LF  ++     +K+ V
Sbjct: 726  EKETRDVSFSDFVNVELVLYSNYDNV-RSIPNMMDGFKPGQRKVLFTCLK---RNDKREV 781

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 782  KVAQLAGSVAEHSAYH-HGETSLMATIVNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSA 840

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++        + +   YD + + EPV      P VLVNG  GI  G
Sbjct: 841  SPRYIFTMLSPLARYIFHKHDDPLLKYE--YDDNQRIEPVYYVPVIPMVLVNGADGIGTG 898

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    +++  D            P  P      G       +    
Sbjct: 899  WMTKIPNYNPREIIENLQRMMEGAD----------PKPMIPYYKNFKGVVESCGDF---- 944

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDE 302
                 R V   E +    +++ +TE+P      A  E + E +    EK    I D ++ 
Sbjct: 945  -----RYVISGEISVIGPDKVEITELPIGTWTQAYKETVLEPMLHGTEKTPAIITDYKEY 999

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            +       ++ + R    ++  + L++   LQ+  ++  +              +++   
Sbjct: 1000 NTDTAVHFIVMMNRDKLVELERDGLHKTFKLQTTMTITSMCAFDENQCLNKYESVVQILK 1059

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAV-ANLDEVVRIIRFSPNPETARRELMQRS 421
             F         K  ++    R   L G+  A  A L    R I    +         ++ 
Sbjct: 1060 GF--------YKVRMDTYHKRKDYLEGILQAEAAKLSNQARFILEKCDSTLVIENKKKKD 1111

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
              A  ++   +     S+ +  +    L E                    D    +    
Sbjct: 1112 MIAELVRRNYESDPVVSWKLSQNREQVLEEAVENDEESTPTTSTMEKENFDYLLGMTMWS 1171

Query: 482  IEIKECLDILSSRSRLLGIIKQ 503
            +  ++  D+L  R   +  +K+
Sbjct: 1172 LTREKKEDLLRQRDEKIAELKR 1193


>gi|23428783|gb|AAM21722.1| topoisomerase II subunit A [Legionella pneumophila]
          Length = 78

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 50/75 (66%), Positives = 61/75 (81%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           I G+V+GKYHPHG+ A+YD + RMAQ +S+R LL++GQGNFGSVDGD PAA RYTE R+ 
Sbjct: 4   IVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRMS 63

Query: 137 KAAHFLLDDLGKDTV 151
           K AH LL DL K+TV
Sbjct: 64  KVAHALLADLEKETV 78


>gi|47226022|emb|CAG04396.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1345

 Score =  170 bits (431), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 100/481 (20%), Positives = 180/481 (37%), Gaps = 57/481 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 751  ERSIPCLVDGLKPGQRKVLFCCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLMMT 806

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  +   +  + + 
Sbjct: 807  IVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSSLARLVFPPVDDNLLK 866

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  NYD + + EP       P VLVNG  GI  G A+ IP +++ E+V+    ++   + 
Sbjct: 867  Y--NYDDNQRVEPEWYIPIIPMVLVNGAEGIGTGWASKIPNYDIREIVNNIHRMLSGDE- 923

Query: 212  DLDALMEIIRGPDFPTGAVILGRTG--IKNAYATGRGSIVIRGVSHIEKTSGDREQIVVT 269
                       P  P      G     + N Y       +I           D   I ++
Sbjct: 924  ---------PLPMLPNYKGFKGTIEQVMNNQYMNSGEVAII-----------DSTTIEIS 963

Query: 270  EIPY----QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
            E+P     Q  K  +LE +     EK    I D ++       R V+ +      +    
Sbjct: 964  ELPVKAWTQTYKENVLEPMLNGT-EKVPPLITDFKEYHTDTTVRFVVRMSEEKLREAEAA 1022

Query: 326  QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
              ++   LQ+  + N +     +       G  + F   R +  V R  +L+      A 
Sbjct: 1023 GFHKVFKLQNPLTCNSM---PEEVRVCA--GYSQDFFELRMKYYVLRKDWLVGMLG--AE 1075

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
                   A   L+++   +     P+     ++Q+    SD      L  + +     + 
Sbjct: 1076 SAKLTNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPVKAWKLAQEKNEDETLED 1135

Query: 446  TMYL-------SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLL 498
                       S      +L + +  LT   ++++  + ++   E+        S + L 
Sbjct: 1136 QEEEEGKEEEASGPDYNYLLSMPMWFLTKEKKEELCKQRDAKLTELNTLK--KKSPADLW 1193

Query: 499  G 499
             
Sbjct: 1194 K 1194


>gi|50291033|ref|XP_447949.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51338747|sp|O93794|TOP2_CANGA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|49527260|emb|CAG60900.1| unnamed protein product [Candida glabrata]
          Length = 1406

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 87/503 (17%), Positives = 175/503 (34%), Gaps = 48/503 (9%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + I+D +    + +++   + R+IP + DG KP  R++L+   +  +   K   K A +
Sbjct: 667  EIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLYTCFKKNLTTEK---KVANL 722

Query: 78   SGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +  V     YH HG  A+   +  MAQ++  +  +  ++  G FG+    G   AA RY 
Sbjct: 723  APAVSDYTAYH-HGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRATGGKDAAAARYI 781

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNI 190
               L K A  +          +    D    EP   L    P VL+NG  GI  G +T+I
Sbjct: 782  YTELNKIARKVFHPADDPLFRYVQE-DEKTVEPEWYLPV-VPMVLINGAEGIGTGWSTSI 839

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P  N  +VV+    ++++ ++D                    G TG      +      +
Sbjct: 840  PPFNPLDVVNNIRHLLNDEEMDDMHPWF-------------RGWTGTMEKIES--QRYRM 884

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGY 308
             G             + +TE+P +   + + E +   +   EK    I D+ +E   +  
Sbjct: 885  YGRIE----QVGPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIKDM-EEQHAETI 939

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + +I+L             Y    L S  S+  +    Y+ +      +        ++ 
Sbjct: 940  KFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHV----HEILKDF 995

Query: 369  VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
               R +Y   +       L   A  ++   + +++I          + L+  +     + 
Sbjct: 996  YEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIID--------KSLIVTNKPKKQLI 1047

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              ++ +                + +  AI+            +  R +       +    
Sbjct: 1048 SELEELGFPRINKEGKPHFGKIDEEVEAIISEDEDEDLEESEEATRKKDKDDESTVNGPE 1107

Query: 489  DILSSRSRLLGIIKQELLSVKDE 511
            ++  +   LLG+    L   + E
Sbjct: 1108 ELFGTYEYLLGLKIWSLTKERYE 1130


>gi|302782265|ref|XP_002972906.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
 gi|300159507|gb|EFJ26127.1| hypothetical protein SELMODRAFT_98330 [Selaginella moellendorffii]
          Length = 1151

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/493 (19%), Positives = 173/493 (35%), Gaps = 48/493 (9%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R++P + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 682  LARSVPSMVDGLKPGQRKILFAAFKRNFTSQA---KVAQFSGYVSEHSAYH-HGEQSLAS 737

Query: 96   ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ++  S  + ++   G FG  S  G   A+ RY    L      +         
Sbjct: 738  TIIGMAQNFVGSNNINILAPIGQFGTRSQGGKDHASARYIYTSLTPLTRTIFPKPD---- 793

Query: 152  DFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
            D   N+   DG   EP       P VLVNG  GI  G +T +P +N  ++V     ++ +
Sbjct: 794  DILLNFLREDGQSIEPFWYAPILPMVLVNGSEGIGTGWSTFVPNYNPRDIVTNLKHLLRD 853

Query: 209  PDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV 267
              ++      +  +G    + +   G +              + G+        +   I 
Sbjct: 854  EPLEPMDPWYKGFKGTIVKSASKESGVS------------YTVTGIVE----QVNETTIR 897

Query: 268  VTEIPYQVNKAAMLEKIAEL---VREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            V E+P +       E +  L     + +   I D R+ +        I L     A+ + 
Sbjct: 898  VLELPIRKWTQDYKEFLEALLCGTEKIKEPSIKDYREHNTDTRVHFEISLSEEKMAEALA 957

Query: 325  NQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKAR 381
              L +   L +  S + + L   +G+  +  T   IL+ F   R E+ V+R +  +   +
Sbjct: 958  EGLTKKFKLSTTISTSNMNLFDKDGHIRKYDTPEQILEDFYHIRLELYVKRKEVQVENLQ 1017

Query: 382  DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL--IDDSSY 439
                 L      +  + +   ++      E       +            DL  +     
Sbjct: 1018 YELLKLDNKVRFILGVVKGEIVVNNRKRAELLVELKTKGFTPFPKKAKASDLPVVGGDGS 1077

Query: 440  TIGSDGTMYLSE----VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
             + +D    L++         +L + +  LT      + NE + L  +++E      +  
Sbjct: 1078 DVEADDEEKLNKGVRAGDYEYLLSMPIGTLTLEKVQQLCNERDKLEGDVEELK--KCTPK 1135

Query: 496  RLLGIIKQELLSV 508
             L        L  
Sbjct: 1136 DLWEKDLDNFLEQ 1148


>gi|195345101|ref|XP_002039114.1| Top2 [Drosophila sechellia]
 gi|194134244|gb|EDW55760.1| Top2 [Drosophila sechellia]
          Length = 1448

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 100/517 (19%), Positives = 196/517 (37%), Gaps = 49/517 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  +  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++ + DG   EP+  L    P VLVNG  GI  G +T I  +N  E+++    +I+  + 
Sbjct: 808  YQVD-DGQKIEPLWYLPI-IPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKMINGQEP 865

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG----DREQIV 267
             +                       +   Y    G I         +T         ++ 
Sbjct: 866  VV-----------------------MHPWYKNFLGRIEYVSDGRYIQTGNLQILHGNRLE 902

Query: 268  VTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGAS----- 319
            ++E+P  V      E + E +     K    +++ ++       R VI    G       
Sbjct: 903  ISELPVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEYHTDTTVRFVISFAPGEFERIRA 962

Query: 320  ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             +   +++++ T+  S   ++    N       T I ILK F   R E   RR  +L+ +
Sbjct: 963  EEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEFYKLRREYYARRRDFLVGQ 1022

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
               +A  L   A  +    E  +++  +   +    EL++R +    +K+    I     
Sbjct: 1023 LTAQADRLSDQARFILEKCEK-KLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDA 1081

Query: 440  TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                +      E       + +  +     +   +         +      + +  R   
Sbjct: 1082 EQADEEDDEEEEAAPSVSSKAKKEKEADPEKAFKKLTDVKKFDYLLGMSMWMLTEERKNE 1141

Query: 500  IIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
            ++KQ    + +  +  ++T  +  L D++  +  + E
Sbjct: 1142 LLKQRDTKLSELENLRKKTPEMLWLDDLDALESKLNE 1178


>gi|223634721|sp|Q01879|TOP2_PICGU RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|190347620|gb|EDK39928.2| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/437 (16%), Positives = 152/437 (34%), Gaps = 39/437 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  + I++ +    + +++   + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 721  DPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRSE---I 776

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A++ G +     YH HG  ++   +  +AQ++  +  L L++  G FGS    G   +
Sbjct: 777  KVAQLVGYISEHTGYH-HGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAGGKDFS 835

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            A RY    +      + + L  D   +  + D    EP   L    P +LVNG  GI  G
Sbjct: 836  AVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPEAYLPI-IPMLLVNGAEGIGTG 893

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP+ N  ++V     +++  +     +    +G             G         
Sbjct: 894  WSTNIPSFNPVDIVANIRRMMNGEEP--VDMTPWFKG-----------WEGDLE--RISP 938

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
                + G         D + + +TEIP +    ++ E +   +   +   I D+ +E   
Sbjct: 939  EKYKVSGKIE----QVDDDTVEITEIPIKTWTNSVKEFLLAGLGNDK-PWIKDM-EEQHG 992

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               R V+ L +      +   L     L S  S++ +     +                 
Sbjct: 993  INIRFVVRLSKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSAN----EIL 1048

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            ++    R +    +    A         ++     +++I         ++          
Sbjct: 1049 KDYYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRSEMVDDLKK 1108

Query: 426  DIKDLIDLIDDSSYTIG 442
                  +      +   
Sbjct: 1109 LKFTRFNKNGKPVHDEP 1125


>gi|33578059|gb|AAQ22353.1| ParC [Salmonella enterica subsp. enterica serovar Stanley]
          Length = 83

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+
Sbjct: 1   YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 60

Query: 118 GSVDGDPP--AAERYTECRLQKAA 139
           G+ D DP   AA RYTE RL K A
Sbjct: 61  GAPD-DPKSFAAMRYTESRLSKYA 83


>gi|110430606|gb|ABG73430.1| DNA topoisomerase II [Pleurotus ostreatus]
          Length = 1571

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/519 (17%), Positives = 187/519 (36%), Gaps = 56/519 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 753  DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 808

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
            K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 809  KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 867

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 868  SPRYIYTEIAPLTRLLCRPSDDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 925

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T IP +N  ++V     +++  ++           P  P              +   +
Sbjct: 926  WSTTIPCYNPVDIVANIRRLMNGEEVV----------PMLP-------------WWRGFK 962

Query: 246  GSIVIRGVSHIE----KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
            G + +      +        +   + +TE+P          ++  ++ EK    + D ++
Sbjct: 963  GEVKMVAKHKYDVTGIAKKLNDTTVEITELPIYKWTQNFKAELEGMIGEKGDGVVKDYKE 1022

Query: 302  ESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGIL 358
              D      V+ +            L   ++ T+  +  ++     +G   +  +   IL
Sbjct: 1023 YHDNLNVHYVVTMPAKELEKAEQQGLIEFFKLTTKINTSNMMCFDFDGKMKKYDSPEEIL 1082

Query: 359  KAFVAFREEVVVRR---TKYLLNKARDRAHVLVGLAIAVANLDEVV------RIIRFSPN 409
            + F   R     +R       L    +R          + +    V       II+    
Sbjct: 1083 EEFYPVRLAYYQKRKDFLANELQTVFERLSNQARFIQMIVDKQLSVSNRKKADIIQDLRK 1142

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
             +      + ++  A ++++++D  D+ +      G+   S      +L + +  LT   
Sbjct: 1143 HQFRPFPKISKAKAAGELEEVVDGADEPAEEEEETGSGD-SATDFDYLLGMAIYSLTKEK 1201

Query: 470  RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
               +R + N   +E+     +    S +        L  
Sbjct: 1202 IGKLRQQANEKELEL--MALLEKKPSEMWNEDLDRFLEE 1238


>gi|8248357|gb|AAF74160.1|AF246741_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248359|gb|AAF74161.1|AF246742_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248361|gb|AAF74162.1|AF246743_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248363|gb|AAF74163.1|AF246744_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248365|gb|AAF74164.1|AF246745_1 DNA gyrase subunit A [Streptococcus mitis]
 gi|8248369|gb|AAF74166.1|AF246747_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248371|gb|AAF74167.1|AF246748_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248373|gb|AAF74168.1|AF246749_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248375|gb|AAF74169.1|AF246750_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248377|gb|AAF74170.1|AF246751_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248379|gb|AAF74171.1|AF246752_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248381|gb|AAF74172.1|AF246753_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248387|gb|AAF74175.1|AF246756_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248393|gb|AAF74178.1|AF246759_1 DNA gyrase subunit A [Streptococcus sanguinis]
 gi|8248395|gb|AAF74179.1|AF246760_1 DNA gyrase subunit A [Streptococcus sanguinis]
          Length = 76

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 60/76 (78%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLD 144
           RYTE R+ K A  +L 
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|146414654|ref|XP_001483297.1| hypothetical protein PGUG_04026 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1400

 Score =  170 bits (430), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/437 (16%), Positives = 153/437 (35%), Gaps = 39/437 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  + I++ +    + +++   + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 721  DPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRSE---I 776

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A++ G +     YH HG  ++   +  +AQ++  +  L L++  G FGS    G   +
Sbjct: 777  KVAQLVGYISEHTGYH-HGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAGGKDFS 835

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
            A RY    +      + + L  D   +  + D    EP   L    P +LVNG  GI  G
Sbjct: 836  AVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPEAYLPI-IPMLLVNGAEGIGTG 893

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP+ N  ++V     +++  +     +    +G             G         
Sbjct: 894  WSTNIPSFNPVDIVANIRRMMNGEEP--VDMTPWFKG-----------WEGDLE--RISP 938

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
                + G         D + + +TEIP +    ++ E +   +   +   I D+ +E   
Sbjct: 939  EKYKVLGKIE----QVDDDTVEITEIPIKTWTNSVKEFLLAGLGNDK-PWIKDM-EEQHG 992

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               R V+ L +      +   L     L S  S++ +     +                 
Sbjct: 993  INIRFVVRLLKEEMDKSLRMGLLERFKLISSISLSNMVAFDPQGRIKKYSSAN----EIL 1048

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
            ++    R +    +    A         ++     +++I         ++ L        
Sbjct: 1049 KDYYWARLELYQRRKDMMAENFQNQLTRLSEQARFIKLIIEKKLTIANKKRLEMVDDLKK 1108

Query: 426  DIKDLIDLIDDSSYTIG 442
                  +      +   
Sbjct: 1109 LKFTRFNKNGKPVHDEP 1125


>gi|322786140|gb|EFZ12747.1| hypothetical protein SINV_05088 [Solenopsis invicta]
          Length = 1518

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 107/528 (20%), Positives = 197/528 (37%), Gaps = 57/528 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+    + R+IP+L DGLKP  R++LF  ++     +K+ V
Sbjct: 685  EKDTRTVSFSDFINVELVLYSNYDNV-RSIPNLMDGLKPGQRKVLFTCLK---RNDKREV 740

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 741  KVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 799

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++        +  R  YD + + EPV      P VLVNG  GI  G
Sbjct: 800  SPRYIFTMLSPLARYIFHKHDDALL--RHEYDDNQKIEPVFYTPVIPMVLVNGADGIGTG 857

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    ++D  D            P  P      G       Y    
Sbjct: 858  WMTKIPNYNPREIIENLHRMMDGAD----------PKPMIPYYKNFKGSVESCGEY---- 903

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDE 302
                 R V   E +    +++ +TE+P         E + E +    +K    I D ++ 
Sbjct: 904  -----RYVISGEISVIGPDKVEITELPIGTWTQTYKETVLEPMLHGSDKTPAIITDYKEY 958

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            +       ++ + R    ++  + L++   LQ+  S+  +              +++   
Sbjct: 959  NTDTAVHFIVIMNRDKLVELERDGLHKAFKLQTTTSITSMCAFDENQCLNKYDNVVQILK 1018

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVAN--LDEVVRIIRFSPNPETARRELMQR 420
             F         K  L+    R   L G+  A A    ++   II            +++ 
Sbjct: 1019 LF--------YKVRLDMYHKRKDYLEGILQAEAAKLSNQARFIIEKCDGTL-----VVEN 1065

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                  I +LI    ++   +    +    E     ++E            +  N    L
Sbjct: 1066 KKKKDMITELIRRNYETDPVVAWKMSQN-REQVLEEVVENDEESAPTTDVIERENFDYLL 1124

Query: 481  GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDME 528
            G+ +         +  LL    +++  +K       RT +     D++
Sbjct: 1125 GMTM--WSLTKEKKDDLLRQRDEKIAELKRLQA---RTPMSLWKEDLD 1167


>gi|224007445|ref|XP_002292682.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971544|gb|EED89878.1| DNA topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1230

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 100/487 (20%), Positives = 183/487 (37%), Gaps = 40/487 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK---YHPHGNAAIYDA 96
            R+IP + DG KP  R++L+   +  +   K  +K A+++G  +G+   YH HG+ ++   
Sbjct: 719  RSIPHIMDGFKPSQRKVLYACFKKKL---KAEIKVAQLAGY-IGEHSAYH-HGDMSLNGT 773

Query: 97   LARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQ +  S  L L+   G FG+  + G   A+ RY   RL+K A  +        ++
Sbjct: 774  IIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFHPDDDALLN 833

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +  N DG   EP       P VLVNG  GI  G ++ I  H+  EV+     +I+  + +
Sbjct: 834  Y-LNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPE 892

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L         P F           I     +  GS ++ G             +++TE+P
Sbjct: 893  LMH-------PHFAG-----YTGEITAESGSREGSYIVEGKIE----RTGDTTLLITELP 936

Query: 273  YQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYRVVIELKRG--ASADVILNQLY 328
                       +  L+   +K   +I+D ++          +   +      +     L 
Sbjct: 937  IGKWTQDYKGFLEGLMIGTDKSPSEISDFKENHTDTTVSFTVTASKDAIDKFEKEKGGLV 996

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRAH 385
                L +  S   + L     +         IL+ F   R E  V+R   LL K R    
Sbjct: 997  GKFKLSTTISTKNMTLFDTNGKIHKYKASVDILRTFFHHRLEYYVKRKDMLLEKMRRELK 1056

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPE-TARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
            V    A  V  + +   ++      E  A  +L        ++K      +D +      
Sbjct: 1057 VYDNKARFVEEVCKGDLVVSNRKRAELLADLQLRGYDLYPREVKKSETEEEDDTSVEEDA 1116

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                L++     +L +++  LT    +++R +      E+++     +S   +     + 
Sbjct: 1117 SDAELAKG-YEYLLGMKIWSLTFERAEELRRQKAEKADEVEKLEG--TSPEAIWMTDLEA 1173

Query: 505  LLSVKDE 511
            +    DE
Sbjct: 1174 IEEALDE 1180


>gi|19112597|ref|NP_595805.1| DNA topoisomerase II [Schizosaccharomyces pombe 972h-]
 gi|12644105|sp|P08096|TOP2_SCHPO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|3393015|emb|CAA20107.1| DNA topoisomerase II [Schizosaccharomyces pombe]
          Length = 1485

 Score =  169 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 160/424 (37%), Gaps = 38/424 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + I D +    + +++   + R+IP + DGLKP  R++++   +  +       K +R+
Sbjct: 722  QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHET---KVSRL 777

Query: 78   SGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYT 131
            +G V  +  YH HG  ++   +  +AQ++  S  + L+   G FG  S  G   +A RY 
Sbjct: 778  AGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYL 836

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L   A  L +      ++++ N +G + EP       P VLVNG  GI  G +T IP
Sbjct: 837  NTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIP 895

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             +N  ++      +++   +++        RG            +GI N           
Sbjct: 896  NYNPKDITANLRHMLNGEPLEIMTPWYRGFRGSITKVAPDRYKISGIIN----------- 944

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE-LV-REKRIVDIADLRDESDRQGY 308
                          ++ +TE+P +     M E +   LV  EK    I D          
Sbjct: 945  ---------QIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEGNV 995

Query: 309  RVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               + L      + +   L   ++ +  Q+  ++     +G   +  ++  IL  F   R
Sbjct: 996  HFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEVR 1055

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
                 RR ++++N+   R       A  +  + E   ++      +       ++    S
Sbjct: 1056 LRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQPIS 1115

Query: 426  DIKD 429
              K 
Sbjct: 1116 KPKK 1119


>gi|8248385|gb|AAF74174.1|AF246755_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDSSIYGAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLD 144
           RYTE R+ K A  +L 
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|297464681|ref|XP_002703368.1| PREDICTED: DNA topoisomerase II, beta isozyme, partial [Bos taurus]
          Length = 873

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/492 (21%), Positives = 191/492 (38%), Gaps = 53/492 (10%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW-- 104
            KP  R++LF   +     +K+ VK A+++G V  M  YH HG  A+   +  +AQ++  
Sbjct: 1   FKPGQRKVLFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVG 56

Query: 105 SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           S  + L++  G FG+    G   A+ RY    L   A  L   +  + + F   YD + +
Sbjct: 57  SNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKFL--YDDNQR 114

Query: 163 -EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
            EP       P VL+NG  GI  G A  +P ++  E+V+    ++D  D           
Sbjct: 115 VEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------P 164

Query: 222 GPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY----QVNK 277
            P  P      G          G+    + G    E    DR  + +TE+P     QV K
Sbjct: 165 HPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITELPVRTWTQVYK 215

Query: 278 AAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
             +LE +     +K    I+D ++       + V+++     A      L++   LQ+  
Sbjct: 216 EQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVFKLQTTL 274

Query: 338 SVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
           + N + L  +     +  T+  ILK F   R      R ++L+      A        A 
Sbjct: 275 TCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--AESTKLNNQAR 332

Query: 395 ANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM------ 447
             L+++   I   + + +   + L+QR + +  +K   +  + ++    S          
Sbjct: 333 FILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEESQNQHDDSSSD 392

Query: 448 --YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
               S      IL + L  LT    +++  + ++ G E+ +      S S L        
Sbjct: 393 SGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDAKGREVSDLKR--KSPSDLWKEDLAAF 450

Query: 506 LSVKDELDTPRR 517
           +   D+++   R
Sbjct: 451 VEELDKVEAQER 462


>gi|313768187|ref|YP_004061618.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
 gi|312599794|gb|ADQ91815.1| hypothetical protein BpV1_188c [Bathycoccus sp. RCC1105 virus BpV1]
          Length = 1073

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 187/497 (37%), Gaps = 56/497 (11%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            TE   S  E     +  + I+D +    + +++   L R+I  + DGLKP  R++L+   
Sbjct: 624  TEKKASELEVPYGNVERLGISDFIHKDLVNFSLAD-LKRSIAHVSDGLKPSQRKVLYACF 682

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
               +      +K A+++  V  K  YH HG  ++ D + ++A ++  S  + L+E  G F
Sbjct: 683  TKNLTSE---MKVAQLAAYVSEKTSYH-HGEVSLADTIVKLAHNFTGSNNINLLEPCGQF 738

Query: 118  GS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            G+  + G   +  RY   +L K A  L D      +++  + DG   EP       P VL
Sbjct: 739  GTRLMGGKDASQTRYIFTKLTKNARILFDPKDDPVLNYLDD-DGKQIEPDYYVPILPTVL 797

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI  G ++ IP  N  ++      +I    +            D  TG V     
Sbjct: 798  VNGTEGIGTGFSSYIPPFNPLDIKHNIERIIRGETVVPMKPWF-----DKFTGRVFSNED 852

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G+           +  GV          + ++VTE+P         E +  L+ +K+   
Sbjct: 853  GL----------WITEGVW-----KYSGKNVLVTELPPGRWTQDYKEYLDTLIEKKK--- 894

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNG---YKPERF 352
            I +  + S       +IE   G       N + +   LQ  F V+ + L        +  
Sbjct: 895  ITNYVNNSTTDDVNFIIEGYTG-------NDIIKDFKLQKTFHVSNMHLFHPTRGIHKYE 947

Query: 353  TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            +   IL  FV  R E   +R  +L+   +++   L  ++  +  +     I+        
Sbjct: 948  SPEEILTDFVKIRSETYKKRKAHLIRVLKEKTKKLENMSKFIDMVIHEKLIVF------- 1000

Query: 413  ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
                  +R      ++++ D ID S   + +  T   +    ++I E             
Sbjct: 1001 ----RRKRVELERQMENIFDKIDGSYEYLLNIKTYQYTLEAIQSIREETSKSRIEFDTLQ 1056

Query: 473  IRNELNSLGIEIKECLD 489
              + ++    ++K    
Sbjct: 1057 QMSHIDMWKRDLKIYKQ 1073


>gi|24020908|gb|AAN40849.1| GyrA [Streptococcus salivarius]
          Length = 76

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 60/76 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDLSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKAA 139
             AA+RYTE R+ K A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|213407866|ref|XP_002174704.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
 gi|212002751|gb|EEB08411.1| DNA topoisomerase [Schizosaccharomyces japonicus yFS275]
          Length = 1499

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/491 (18%), Positives = 179/491 (36%), Gaps = 43/491 (8%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            + I + +    + +++   + R+IP + DGLKP  R++++GM +  +   K   K  +++
Sbjct: 721  IEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNL---KNEAKVEQLA 776

Query: 79   GEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTE 132
            G +  +  YH HG  ++   +  +A ++  S  + L+  +G FGS    G   A  RY  
Sbjct: 777  GYISEQTAYH-HGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIF 835

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPT 192
                + A  L D      +++  N +G + EP       P +LVNG  GI  G +T IP 
Sbjct: 836  TMPSRMARLLFDKRDDPILNY-LNDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPN 894

Query: 193  HNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRG 252
             N  ++V     +I N              P  P      G  G        R    + G
Sbjct: 895  FNPSDLVKNIRHLIKNE-------------PLEPMHPWYRGFKGTIQQMTPDR--YKVSG 939

Query: 253  VSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV-REKRIVDIADLRDESDRQGYRVV 311
            +          + + +TE+P ++    M E +  L+  +K+   I D  +    +     
Sbjct: 940  IIE----QVSDDTVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHFR 995

Query: 312  IELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAFVAFREEV 368
            ++L +   A  +   L     +     + NMVA +      +  +   ILK F   R   
Sbjct: 996  VKLTKEGMATALAEGLENKFKVARTLATSNMVAFDPQGRIRKYDSAYDILKEFYEVRLRY 1055

Query: 369  VVRRTKY---LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQ-----R 420
              RR ++    L     +          +     VV   + S   +  R +  +     +
Sbjct: 1056 YQRRKEHLVNDLETVYTKISNQARFIHMIIEGTLVVAKKKRSVLVQELREKGFKAIPKPK 1115

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                ++I       +  +     +            +L + +  LT     ++  +    
Sbjct: 1116 KGRLAEIAAQETAANRDADDDAEEEDASPEADDFTYLLNMPVYSLTYERYMNLLKKKGEC 1175

Query: 481  GIEIKECLDIL 491
              E+ + + I 
Sbjct: 1176 EEELDKLMKIT 1186


>gi|270650935|ref|ZP_06222222.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270317177|gb|EFA28783.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 157

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 28/185 (15%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L +  G+ VRF  +A+R   GR + GVRGI LA                          
Sbjct: 1   MLFSSQGRVVRFAENAVRAM-GRLATGVRGIKLA-------------------------L 34

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                    + + EEI+    ++S++ NI +     +   E  ILT ++ G+GKRT   +
Sbjct: 35  TNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEGAILTATQNGYGKRTQLSE 94

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +   +R+ KG+ +  VS+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R 
Sbjct: 95  YPTKSRNTKGVISIKVSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRN 152

Query: 877 TKGVV 881
           T+GV 
Sbjct: 153 TQGVR 157



 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKDERVVSVERIRESEIV 903
           +L S +G ++R   N +R   R   GV           + DE  V +E I +    
Sbjct: 1   MLFSSQGRVVRFAENAVRAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAE 56



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLGQ 704
           ++ AT++G  +R +LS++   +R+ K  + +       ++++     + + I+L T  G 
Sbjct: 78  ILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAATQVEETDQIMLITDAGT 137

Query: 705 CVRFPISAIRVFAGRNSVGVR 725
            VR  +S +    GRN+ GVR
Sbjct: 138 LVRTRVSEV-SIVGRNTQGVR 157



 Score = 47.1 bits (110), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 26/112 (23%)

Query: 818 RISNRSGKGIRATDVSKINEI-------------------------GALVAVFPVNDNDQ 852
           R   R   G+R   ++  N+I                           +V++        
Sbjct: 18  RAMGRLATGVRGIKLALTNDISDDESAVEIEEISDDNAEASLDLNIDKVVSLVVPKGEGA 77

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEIV 903
           I+  +  G   R  ++E    SR TKGV+    ++ + +VV+  ++ E++ +
Sbjct: 78  ILTATQNGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAATQVEETDQI 129


>gi|24020910|gb|AAN40850.1| GyrA [Streptococcus mitis]
          Length = 76

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/76 (60%), Positives = 60/76 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKAA 139
             AA+RYTE R+ K A
Sbjct: 61  GAAAQRYTEARMSKIA 76


>gi|161598231|gb|ABX74936.1| topoisomerase IV [Ureaplasma urealyticum]
          Length = 89

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 61/87 (70%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA 126
            +K Y K AR  GEV+GKYHPHG+++IY+A+ RM+QDW   L L++  GN GS+DGD  A
Sbjct: 3   HDKPYKKSARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDMHGNKGSIDGDNAA 62

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDF 153
           A RYTE RL K A  +L +L KD V F
Sbjct: 63  AMRYTETRLSKIASVMLTNLKKDVVKF 89


>gi|299755855|ref|XP_001828929.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298411411|gb|EAU92936.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 1557

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 187/513 (36%), Gaps = 29/513 (5%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  ++ +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 736  DHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL---KKEI 791

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A++ G +     YH HG A++   +  +AQD+  S  L L+   G +G+  + G   A
Sbjct: 792  KVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHA 850

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGI 182
            A RY     +     +         D   NY   D    EP   +    P VL+NG  GI
Sbjct: 851  APRYIFTNAKSITRAIYHPFD----DPLLNYLKDDDVPIEPEWYMPT-VPMVLINGAEGI 905

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGIKNAY 241
              G +TNIP +N  ++V     ++   + +         +G   PTG       G+    
Sbjct: 906  GTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGFKGEVRPTGKGKYDVVGVATKI 965

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                  I    +    +T  D  + ++T      +K    ++  +    K    + D ++
Sbjct: 966  NDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKKDVVKNAGMVKDFKE 1025

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGIL 358
              D       + +            L  +  L +  S   + L  ++    +  T   IL
Sbjct: 1026 HHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMILFDFEGKIKKYETPEEIL 1085

Query: 359  KAFVAFREEVVVRRTKY---LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            K F   R     +R  Y    L+ A D+ +  +     +   + VV   + +      R+
Sbjct: 1086 KDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKKELVVSNRKKADIVAELRK 1145

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
               +     +  K      ++       + +   +      +L + +  LT    + ++ 
Sbjct: 1146 LNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLLGMAIYSLTRERIEKLKQ 1205

Query: 476  ELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            + +    E+     +  S + L      + L  
Sbjct: 1206 QAHEKEQELLAL--LEKSPTDLWNTDLDKFLEE 1236


>gi|224007473|ref|XP_002292696.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
 gi|220971558|gb|EED89892.1| topoisomerase [Thalassiosira pseudonana CCMP1335]
          Length = 1172

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 142/363 (39%), Gaps = 36/363 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK---YHPHGNAAIYDA 96
            R+IP + DG KP  R++L+   +  +   K  +K A+++G  +G+   YH HG+ ++   
Sbjct: 691  RSIPHIMDGFKPSQRKVLYACFKKKL---KAEIKVAQLAGY-IGEHSAYH-HGDMSLNGT 745

Query: 97   LARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQ +  S  L L+   G FG+  + G   A+ RY   RL+K A  +        ++
Sbjct: 746  IIGMAQSYCGSNNLNLLYPSGQFGTRRMGGKDHASARYIFTRLEKIARAIFHPDDDALLN 805

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +  N DG   EP       P VLVNG  GI  G ++ I  H+  EV+     +I+  + +
Sbjct: 806  Y-LNDDGLSIEPEYYMPVIPMVLVNGSDGIGTGWSSTIQNHDPREVIANIKKMINGEEPE 864

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            L           F     I   +G +       GS ++ G             +++TE+P
Sbjct: 865  LMHP----HFAGF--TGEITAESGSRE------GSYIVEGKIE----RTGDTTLLITELP 908

Query: 273  YQVNKAAMLEKIAELVR--EKRIVDIADLRDESDRQGYRVVIELKRG--ASADVILNQLY 328
                       +  L+   +K   +I+D ++          +          +     L 
Sbjct: 909  VGKWTQNYKAFLEGLMSGTDKDPSEISDFKENHTDTTVSFTVTATEENINKFEYGKGGLL 968

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   L +  S   + L     +         IL+ F   R E  V+R   LL K R    
Sbjct: 969  KKFKLSTTMSTANMHLFSEDGKIVKYNGSVDILRTFFHHRLEYYVKRKDMLLEKLRRELK 1028

Query: 386  VLV 388
            V  
Sbjct: 1029 VYD 1031


>gi|195580167|ref|XP_002079927.1| Top2 [Drosophila simulans]
 gi|194191936|gb|EDX05512.1| Top2 [Drosophila simulans]
          Length = 1133

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/417 (22%), Positives = 167/417 (40%), Gaps = 49/417 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  +  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLD 807

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++ + DG   EP+  L    P VLVNG  GI  G +T I  +N  E+++    +I+  + 
Sbjct: 808  YQVD-DGQKIEPLWYLPI-IPMVLVNGAEGIGTGWSTKISNYNPREIMNNLRKMINGQEP 865

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG----DREQIV 267
             +                       +   Y    G I         +T         ++ 
Sbjct: 866  VV-----------------------MHPWYKNFLGRIEYVSDGRYVQTGNLQILHGNRLE 902

Query: 268  VTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGAS----- 319
            ++E+P  V      E + E +     K    +++ ++       R VI    G       
Sbjct: 903  ISELPVGVWTQNYKENVLEALSNGTEKVKAVVSEYKEYHTDTTVRFVISFAPGEFERIRA 962

Query: 320  ADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
             +   +++++ T+  S   ++    N       T I ILK F   R E   RR  +L+ +
Sbjct: 963  EEGGFHRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEFYKLRREYYARRRDFLVGQ 1022

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
               +A  L   A  +    E  +++  +   +    EL++R +    +K+    I  
Sbjct: 1023 LTAQADRLSDQARFILEKCEK-KLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKM 1078


>gi|121308839|dbj|BAF43524.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1569

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 187/513 (36%), Gaps = 29/513 (5%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  ++ +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 751  DHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL---KKEI 806

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A++ G +     YH HG A++   +  +AQD+  S  L L+   G +G+  + G   A
Sbjct: 807  KVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHA 865

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGI 182
            A RY     +     +         D   NY   D    EP   +    P VL+NG  GI
Sbjct: 866  APRYIFTNAKSITRAIYHPFD----DPLLNYLKDDDVPIEPEWYMPT-VPMVLINGAEGI 920

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGIKNAY 241
              G +TNIP +N  ++V     ++   + +         +G   PTG       G+    
Sbjct: 921  GTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGFKGEVRPTGKGKYDVVGVATKI 980

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                  I    +    +T  D  + ++T      +K    ++  +    K    + D ++
Sbjct: 981  NDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKKDVVKNAGMVKDFKE 1040

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGIL 358
              D       + +            L  +  L +  S   + L  ++    +  T   IL
Sbjct: 1041 HHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMILFDFEGKIKKYETPEEIL 1100

Query: 359  KAFVAFREEVVVRRTKY---LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            K F   R     +R  Y    L+ A D+ +  +     +   + VV   + +      R+
Sbjct: 1101 KDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKKELVVSNRKKADIVAELRK 1160

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
               +     +  K      ++       + +   +      +L + +  LT    + ++ 
Sbjct: 1161 LNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLLGMAIYSLTRERIEKLKQ 1220

Query: 476  ELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            + +    E+     +  S + L      + L  
Sbjct: 1221 QAHEKEQELLAL--LEKSPTDLWNTDLDKFLEE 1251


>gi|156538202|ref|XP_001601580.1| PREDICTED: similar to topoisomerase II [Nasonia vitripennis]
          Length = 1510

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 88/403 (21%), Positives = 151/403 (37%), Gaps = 48/403 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP++ DGLKP  R++LF   +     +K+ VK A++   V     YH HG  ++   +
Sbjct: 706  RSIPNMMDGLKPGQRKVLFTCFK---RNDKREVKVAQLGASVAEHSAYH-HGEMSLMATI 761

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A ++        +  
Sbjct: 762  VNLAQNFVGSNNINLLQPIGQFGTRLAGGKDSASPRYIFTMLSPLARYIFHKHDDPLLKH 821

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EP       P VLVNG  GI  G  T IP +N  E+++    ++D  D  
Sbjct: 822  E--YDDNQKIEPTYYVPIIPMVLVNGADGIGTGWMTKIPNYNPREIIENLQRMMDGAD-- 877

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P  P      G       Y         R V   E +    +++ +TE+P
Sbjct: 878  --------PRPMSPFYKNFKGTIESCGDY---------RYVISGEISIIGPDKVEITELP 920

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
                  A  E + E +    +K    I D ++ +       V+ L+R   A++  + L++
Sbjct: 921  IGTWTQAYKETVLEPMLHGSDKTPPVITDYKEYNTDTMVHFVVTLQRDKLAELERDGLHK 980

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY--LLNKARDRAHVL 387
               LQ+                            F     + RT +   L+  + R   L
Sbjct: 981  AFKLQTT----------TSITSMCAFDDNLCLKKFDNVCQIMRTFFTVRLDLYQKRKDYL 1030

Query: 388  VGLAIAVA-NLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             G+  A +  L    R I    +         ++   A  ++ 
Sbjct: 1031 EGILQAESAKLSNQSRFIMEKCDGTLTIENKKKKDMIAELVRR 1073


>gi|57898980|dbj|BAD86854.1| DNA topoisomerase II [Coprinopsis cinerea]
          Length = 1572

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 92/513 (17%), Positives = 187/513 (36%), Gaps = 29/513 (5%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +  ++ +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 751  DHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKL---KKEI 806

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K A++ G +     YH HG A++   +  +AQD+  S  L L+   G +G+  + G   A
Sbjct: 807  KVAQLVGYISEHAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHA 865

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGI 182
            A RY     +     +         D   NY   D    EP   +    P VL+NG  GI
Sbjct: 866  APRYIFTNAKSITRAIYHPFD----DPLLNYLKDDDVPIEPEWYMPT-VPMVLINGAEGI 920

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGIKNAY 241
              G +TNIP +N  ++V     ++   + +         +G   PTG       G+    
Sbjct: 921  GTGWSTNIPPYNPVDIVANLRRMMKEEEPEPMTPWWRGFKGEVRPTGKGKYDVVGVATKI 980

Query: 242  ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301
                  I    +    +T  D  + ++T      +K    ++  +    K    + D ++
Sbjct: 981  NDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKKDVVKNAGMVKDFKE 1040

Query: 302  ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGIL 358
              D       + +            L  +  L +  S   + L  ++    +  T   IL
Sbjct: 1041 HHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVSTTNMILFDFEGKIKKYETPEEIL 1100

Query: 359  KAFVAFREEVVVRRTKY---LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            K F   R     +R  Y    L+ A D+ +  +     +   + VV   + +      R+
Sbjct: 1101 KDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKKELVVSNRKKADIVAELRK 1160

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
               +     +  K      ++       + +   +      +L + +  LT    + ++ 
Sbjct: 1161 LNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLLGMAIYSLTRERIEKLKQ 1220

Query: 476  ELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            + +    E+     +  S + L      + L  
Sbjct: 1221 QAHEKEQELLAL--LEKSPTDLWNTDLDKFLEE 1251


>gi|197725599|gb|ACH73008.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 92

 Score =  169 bits (427), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 47/93 (50%), Positives = 63/93 (67%), Gaps = 3/93 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDT 150
            D DP   AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|307180209|gb|EFN68242.1| DNA topoisomerase 2 [Camponotus floridanus]
          Length = 1502

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 100/504 (19%), Positives = 182/504 (36%), Gaps = 49/504 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+    + R+IP++ DG KP  R+++F  ++     +K+ V
Sbjct: 679  EKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVMFTCLK---RNDKREV 734

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 735  KVAQLAGSVAEHSAYH-HGETSLMATIINLAQNFVGSNNINLLQPIGQFGTRLTGGKDAA 793

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVG 185
            + RY    L   A ++        +     YD + + EPV      P +LVNG  GI  G
Sbjct: 794  SPRYIFTMLSPLARYIFHKHDDALLKHE--YDDNQKIEPVFYVPVIPMILVNGADGIGTG 851

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
              T IP +N  E+++    ++D  D            P  P      G       Y    
Sbjct: 852  WMTKIPNYNPREIIENLHRMMDGAD----------PKPMSPYYKNFKGVVESCGDY---- 897

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDE 302
                 R V   E +    +++ +TE+P         E + E +    EK    I D ++ 
Sbjct: 898  -----RYVISGEISVIGPDKLEITELPIGTWTQTYKETVLEPMLHGSEKIPAIITDYKEY 952

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
            +       +I L R    ++    L++   +QS                       +   
Sbjct: 953  NTDTAVHFIIILNRDKLLELEREGLHKAFKIQST----------TTITSMCAFDENQCLN 1002

Query: 363  AFREEVVVRR--TKYLLNKARDRAHVLVGLAIAVA-NLDEVVRIIRFSPNPETARRELMQ 419
             +   + + +   K  L     R   L G+  A +  L    R I    +         +
Sbjct: 1003 KYENVIQILKVFYKVRLETYHKRKDYLEGILKAESAKLSNQARFILEKCDGTLVIENKKK 1062

Query: 420  RSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNS 479
            +   A  ++   D      + +  +    L EV          A        D    +  
Sbjct: 1063 KDMIAELVRRNYDSDPVMVWKLSQNREQVLEEVGEHDDENAPTATAMEKENFDYLLGMTM 1122

Query: 480  LGIEIKECLDILSSRSRLLGIIKQ 503
              +  ++  D+L  R   +  +K+
Sbjct: 1123 WTLTKEKKDDLLRQRDEKMAELKR 1146


>gi|124108791|gb|ABM90972.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 60/73 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDG 122
           L++GQGNFGS+DG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|221110139|ref|XP_002163496.1| PREDICTED: similar to DNA topoisomerase 2 [Hydra magnipapillata]
          Length = 1315

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 92/475 (19%), Positives = 169/475 (35%), Gaps = 60/475 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDA 96
             R+IP + DG KP  R IL+   + G     K VK ++++G V     YH HG A++  A
Sbjct: 833  DRSIPSMIDGFKPSQRMILYCCFKRGRHS--KEVKVSQLAGYVSENTDYH-HGEASLQGA 889

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQ++  S  + ++   GNFG     G   A+ RY    L   A+++  +   + + 
Sbjct: 890  IIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYIFTELHPIANYIFREEDDEILK 949

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  NYD   + EP V     P  ++NG  GI  G + N+P HN  +VV     +I+  + 
Sbjct: 950  Y--NYDDDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVPPHNPLDVVANLKRLIN--EK 1005

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            D   ++               G  G            +IRG   I     D  +I + +I
Sbjct: 1006 DPVDMLPWY-----------NGFKGTIEKNPKATNKYIIRGKYCI-----DGNKIHIEDI 1049

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            P        +E     + +K        +      G                L++    T
Sbjct: 1050 PIV---NGWIEPYESKMEQKEDDGQELQKLYKTGVGN---------------LDKFLNMT 1091

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
               S+ ++NM    G   +  ++  +L  F  +R E+  +R ++            + L 
Sbjct: 1092 QSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQKRKEF----------FFLKLQ 1141

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNAS-DIKDLIDLIDDSSYTIGSDGTMYLS 450
              +      V+ IR          +       A  + K    +  D    + S    YL+
Sbjct: 1142 NDLDISTYKVKFIREYLAKTIKIAKKKVVEVIAQLETKGYPKMASDHRLPMASRSYRYLT 1201

Query: 451  EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            ++    + + ++        +  +   +       + + +      L    K   
Sbjct: 1202 DMSIMTLTDDKIK-ELENNMEHCQMLYDQYLNTPIKKIWLNELDEFLSMYKKYFT 1255


>gi|5121|emb|CAA27857.1| unnamed protein product [Schizosaccharomyces pombe]
          Length = 1431

 Score =  168 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/424 (19%), Positives = 160/424 (37%), Gaps = 38/424 (8%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + I D +    + +++   + R+IP + DGLKP  R++++   +  +       K +R+
Sbjct: 668  QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHET---KVSRL 723

Query: 78   SGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYT 131
            +G V  +  YH HG  ++   +  +AQ++  S  + L+   G FG  S  G   +A RY 
Sbjct: 724  AGYVASETAYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYL 782

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L   A  L +      ++++ N +G + EP       P VLVNG  GI  G +T IP
Sbjct: 783  NTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIP 841

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
             +N  ++      +++   +++        RG            +GI N           
Sbjct: 842  NYNPKDITANLRHMLNGEPLEIMTPWYRGFRGSITKVAPDRYKISGIIN----------- 890

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE-LV-REKRIVDIADLRDESDRQGY 308
                          ++ +TE+P +     M E +   LV  EK    I D          
Sbjct: 891  ---------QIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEGIV 941

Query: 309  RVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
               + L      + +   L   ++ +  Q+  ++     +G   +  ++  IL  F   R
Sbjct: 942  HFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEVR 1001

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
                 RR ++++N+   R       A  +  + E   ++      +       ++    S
Sbjct: 1002 LRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQPIS 1061

Query: 426  DIKD 429
              K 
Sbjct: 1062 KPKK 1065


>gi|3786306|dbj|BAA33955.1| TopoisomeraseII [Candida glabrata]
          Length = 1406

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/503 (17%), Positives = 174/503 (34%), Gaps = 48/503 (9%)

Query: 18   SVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARI 77
             + I+D +    + +++   +  +IP + DG KP  R++L+   +  +   K   K A +
Sbjct: 667  EIPISDFINKELILFSLADNVS-SIPSVLDGFKPGQRKVLYTCFKKNLTTEK---KVANL 722

Query: 78   SGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            +  V     YH HG  A+   +  MAQ++  +  +  ++  G FG+    G   AA RY 
Sbjct: 723  APAVSDYTAYH-HGEQALVQTIIGMAQNFVGTNNIYFLKPNGAFGTRATGGKDAAAARYI 781

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNI 190
               L K A  +          +    D    EP   L    P VL+NG  GI  G +T+I
Sbjct: 782  YTELNKIARKVFHPADDPLFRYVQE-DEKTVEPEWYLPV-VPMVLINGAEGIGTGWSTSI 839

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI 250
            P  N  +VV+    ++++ ++D                    G TG      +      +
Sbjct: 840  PPFNPLDVVNNIRHLLNDEEMDDMHPWF-------------RGWTGTMEKIES--QRYRM 884

Query: 251  RGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGY 308
             G             + +TE+P +   + + E +   +   EK    I D+ +E   +  
Sbjct: 885  YGRIE----QVGPNTLEITELPARTWTSTIKEHLLLGLGGSEKVKPWIKDM-EEQHAETI 939

Query: 309  RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
            + +I+L             Y    L S  S+  +    Y+ +      +        ++ 
Sbjct: 940  KFIIKLTDEEMTKTRKLGFYERFKLISPISLQNMVAFDYRGKIKKYDHV----HEILKDF 995

Query: 369  VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
               R +Y   +       L   A  ++   + +++I          + L+  +     + 
Sbjct: 996  YEVRLEYYQKRKDYMTGRLQWEAEKLSFQVKFIKMIID--------KSLIVTNKPKKQLI 1047

Query: 429  DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              ++ +                + +  AI+            +  R +       +    
Sbjct: 1048 SELEELGFPRINKEGKPHFGKIDEEVEAIISEDEDEDLEESEEATRKKDKDDESTVNGPE 1107

Query: 489  DILSSRSRLLGIIKQELLSVKDE 511
            ++  +   LLG+    L   + E
Sbjct: 1108 ELFGTYEYLLGLKIWSLTKERYE 1130


>gi|91079588|ref|XP_967653.1| PREDICTED: similar to topoisomerase II [Tribolium castaneum]
          Length = 1552

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 102/520 (19%), Positives = 190/520 (36%), Gaps = 57/520 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 717  RSIPCLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLCMTI 772

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+E +G FG+    G   A+ RY   ++      + +       D+
Sbjct: 773  VNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSASPRYIFTKMSPLTRMIFNPSD----DY 828

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
               +   D    EPV      P VLVNG  GI  G  T IP +N  E+V    A++D  +
Sbjct: 829  LLKHEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWMTKIPNYNPRELVKNIRAMLDQEE 888

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                           PT  V   +  I +    G    V  G    E       ++ +TE
Sbjct: 889  ---------------PTNMVPWYKNFIGSIVDCGDNRYVASG----EIAIIGDNRVEITE 929

Query: 271  IPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ- 326
            +P         E + E      EK    I D ++ +     + +I    G   + + N+ 
Sbjct: 930  LPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNTDTTVKFIITFLPGQL-ETLENEA 988

Query: 327  -LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV-RRTKYLLNKARDRA 384
             L++   LQSL S + + +            +      + +  +   + +    +   +A
Sbjct: 989  GLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDILKDYYKLRLTMYQKRKDYLEGMLKA 1048

Query: 385  HVLVGLAIAVANLDEVVR-IIRFSPNPETARRELMQRSWNASDIKDLIDLI---DDSSYT 440
                    A   +++  R ++  +   +    EL++R +    +KD    +   D     
Sbjct: 1049 EASKLSNQARFIMEKCDRTLVVENKKRKVIIDELIKRGYEPDPVKDWKQRVATEDGDEEA 1108

Query: 441  IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
               +     +E  T+  ++   A             L          +     ++ LL  
Sbjct: 1109 PAEEEEAPATEQTTKKPVDPEKAFQNSTDVQKFDYLLGMSM-----WMLTEEKKNELLRQ 1163

Query: 501  IKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDM 538
               +L  ++      ++T       D++   E     E+ 
Sbjct: 1164 RDIKLQELETL---KKKTHCDLWREDLDAFMEKLDEVEEK 1200


>gi|270004896|gb|EFA01344.1| topoisomerase II [Tribolium castaneum]
          Length = 1547

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 102/520 (19%), Positives = 190/520 (36%), Gaps = 57/520 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+++F   +     +K+ VK A+++G V  M  YH HG  ++   +
Sbjct: 717  RSIPCLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLCMTI 772

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+E +G FG+    G   A+ RY   ++      + +       D+
Sbjct: 773  VNLAQNFVGSNNINLLEPRGQFGTRMAGGKDSASPRYIFTKMSPLTRMIFNPSD----DY 828

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
               +   D    EPV      P VLVNG  GI  G  T IP +N  E+V    A++D  +
Sbjct: 829  LLKHEFEDNQKIEPVWYIPIIPMVLVNGADGIGTGWMTKIPNYNPRELVKNIRAMLDQEE 888

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                           PT  V   +  I +    G    V  G    E       ++ +TE
Sbjct: 889  ---------------PTNMVPWYKNFIGSIVDCGDNRYVASG----EIAIIGDNRVEITE 929

Query: 271  IPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ- 326
            +P         E + E      EK    I D ++ +     + +I    G   + + N+ 
Sbjct: 930  LPIGTWTQNYKENVLEPLLHGSEKVKAVIQDYKEYNTDTTVKFIITFLPGQL-ETLENEA 988

Query: 327  -LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVV-RRTKYLLNKARDRA 384
             L++   LQSL S + + +            +      + +  +   + +    +   +A
Sbjct: 989  GLHKTFKLQSLISTSSMCVFDELGCIRRYDSVTDILKDYYKLRLTMYQKRKDYLEGMLKA 1048

Query: 385  HVLVGLAIAVANLDEVVR-IIRFSPNPETARRELMQRSWNASDIKDLIDLI---DDSSYT 440
                    A   +++  R ++  +   +    EL++R +    +KD    +   D     
Sbjct: 1049 EASKLSNQARFIMEKCDRTLVVENKKRKVIIDELIKRGYEPDPVKDWKQRVATEDGDEEA 1108

Query: 441  IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
               +     +E  T+  ++   A             L          +     ++ LL  
Sbjct: 1109 PAEEEEAPATEQTTKKPVDPEKAFQNSTDVQKFDYLLGMSM-----WMLTEEKKNELLRQ 1163

Query: 501  IKQELLSVKDELDTPRRTRIVEGLLDME--DEDCIVREDM 538
               +L  ++      ++T       D++   E     E+ 
Sbjct: 1164 RDIKLQELETL---KKKTHCDLWREDLDAFMEKLDEVEEK 1200


>gi|194294671|gb|ACF40330.1| DNA gyrase subunit A [Corynebacterium amycolatum]
          Length = 79

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 56/79 (70%)

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ AIY  + RMAQ WS+R  L++GQGNFGS   D PAA RYTE RL   A  ++ D+
Sbjct: 1   PHGDIAIYGTMVRMAQPWSMRYPLVDGQGNFGSRGDDGPAAMRYTEARLTPLAMEMVRDI 60

Query: 147 GKDTVDFRPNYDGSFQEPV 165
            ++TVDF+PNYDG   EPV
Sbjct: 61  RENTVDFQPNYDGRTTEPV 79


>gi|294637121|ref|ZP_06715432.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
 gi|291089692|gb|EFE22253.1| DNA gyrase subunit A [Edwardsiella tarda ATCC 23685]
          Length = 159

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 55/188 (29%)

Query: 723 GVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVE 782
           GVRGI LA  D+V+S+ IV H                                       
Sbjct: 2   GVRGIKLADDDRVVSL-IVPHG-------------------------------------- 22

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
                         E  ILTV++ G+GKR++  ++   +R+ +G+ +  V++ N  G +V
Sbjct: 23  --------------EGAILTVTQNGYGKRSAVAEYPTKSRATQGVISIKVTERN--GRVV 66

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI 902
               ++D DQI++++D GTL+R  V+E+ I  R T+GV++  TA+DE VV ++R+ E   
Sbjct: 67  GAVQIDDGDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEPVD 126

Query: 903 VDEAESTE 910
            +E +S +
Sbjct: 127 DEELDSID 134



 Score = 62.9 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 10/166 (6%)

Query: 617 ALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAM 676
             +  + L   +R+ +++             ++  T++G  +R+ ++++   +R+ +  +
Sbjct: 1   PGVRGIKLADDDRVVSLI------VPHGEGAILTVTQNGYGKRSAVAEYPTKSRATQGVI 54

Query: 677 KLD---SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
            +        ++        + I++ T  G  VR  +S +    GRN+ GV  I  A+ +
Sbjct: 55  SIKVTERNGRVVGAVQIDDGDQIMMITDAGTLVRTRVSEV-SIVGRNTQGVILIRTAEDE 113

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            V+ +  V+    D +              ++     +     +  
Sbjct: 114 HVVGLQRVVEPVDDEELDSIDGSAAEGDEEIVPEVENDDEGSDDAE 159



 Score = 44.4 bits (103), Expect = 0.10,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 3/125 (2%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQ 734
           +KL   D ++S+     E  IL  T+ G   R  ++       R + GV  I + +   +
Sbjct: 6   IKLADDDRVVSLIVPHGEGAILTVTQNGYGKRSAVAEY-PTKSRATQGVISIKVTERNGR 64

Query: 735 VISMAIVLHADADYDERICY-MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
           V+    +   D          +         I G   +   L   +  E  +  +R  E 
Sbjct: 65  VVGAVQIDDGDQIMMITDAGTLVRTRVSEVSIVGRNTQGVILIRTAEDEHVVGLQRVVEP 124

Query: 794 KLKEQ 798
              E+
Sbjct: 125 VDDEE 129


>gi|33636521|gb|AAQ23558.1| RE49802p [Drosophila melanogaster]
          Length = 1157

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/413 (23%), Positives = 168/413 (40%), Gaps = 41/413 (9%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 577 ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 632

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  +  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 633 IVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHPLDDPLLD 692

Query: 153 FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
           ++ + DG   EP+  L    P VLVNG  GI  G +T I  +N  E++     +I+  + 
Sbjct: 693 YQVD-DGQKIEPLWYLPI-IPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEP 750

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +            P     LGR    +      G  +  G   I        ++ ++E+
Sbjct: 751 SVMH----------PWYKNFLGRMEYVSD-----GRYIQTGNIQI----LSGNRLEISEL 791

Query: 272 PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILN--- 325
           P  V      E + E +     K    I++ R+       R VI    G    +      
Sbjct: 792 PVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHTDTTVRFVISFAPGEFERIHAEEGG 851

Query: 326 --QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             ++++ T+  S   ++    N       T I ILK +   R E   RR  +L+ +   +
Sbjct: 852 FYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYKLRREYYARRRDFLVGQLTAQ 911

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
           A  L   A  +    E  +++  +   +    EL++R +    +K+    I  
Sbjct: 912 ADRLSDQARFILEKCEK-KLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKM 963


>gi|322510995|gb|ADX06308.1| putative DNA gyrase/DNA topoisomerase IV subunit A [Organic Lake
           phycodnavirus 2]
          Length = 602

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 165/429 (38%), Gaps = 44/429 (10%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDA 96
            R+IP++ DGLK   R+IL+   +  +      +K A+ SG V     YH HG  ++  A
Sbjct: 182 DRSIPNMMDGLKVSQRKILYSAFKKNLVHE---IKVAQFSGYVSEHSGYH-HGENSLNGA 237

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  MAQ++  S  + ++   G FG+    G   A+ERY    L K    +        + 
Sbjct: 238 IVNMAQNFVGSNNINILMPNGQFGTRLQGGKDSASERYIFTNLNKITRMIFKKEDDAILT 297

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +  + DG+F EP+      P +LVNG  GI  G +T+IP  +  ++++     + +    
Sbjct: 298 YLKD-DGTFVEPIYYLPILPMILVNGTKGIGTGFSTDIPCFHPVQLINYIQHKLADKAYT 356

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +   +G         + + G +     G               + D++ I +TE+P
Sbjct: 357 -RDFVPFYQG-----FQGTIEKDGDRRFITKG-------------NYTIDKQVITITELP 397

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
             V       +   L  EK +  + D +D+S  +     + LK+        + L +   
Sbjct: 398 IGV-----WNEDYILHLEKCMDILKDYKDQSTDKKVYFKLTLKQPME----ESDLIKTFK 448

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           L +  S+N + L  +  +      + +    F    +    K  L+  +     +  L  
Sbjct: 449 LSTTLSINNMNLFDHNDKLKHYNEVYEICDDFIGIRLDYYEKRRLHLIQILKEEMEVLKN 508

Query: 393 AVANLDEVVR---IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-- 447
               ++E++     +R   N +       ++    +D    +  +   S    +  ++  
Sbjct: 509 KCNYINELLNDTLDLRKKTNNDICDILEKKKYTKINDSYHYLIKMSMDSVCQENVDSLNQ 568

Query: 448 YLSEVQTRA 456
            L+  Q+  
Sbjct: 569 QLNGKQSEY 577


>gi|190409077|gb|EDV12342.1| DNA topoisomerase 2 [Saccharomyces cerevisiae RM11-1a]
          Length = 1428

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|124108803|gb|ABM90978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  168 bits (425), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 60/73 (82%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSVDG 122
           L++GQGNFGS+DG
Sbjct: 61  LVDGQGNFGSIDG 73


>gi|6324241|ref|NP_014311.1| Top2p [Saccharomyces cerevisiae S288c]
 gi|1351262|sp|P06786|TOP2_YEAST RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|19880866|gb|AAM00518.1|AF458969_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880880|gb|AAM00530.1|AF458971_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880887|gb|AAM00536.1|AF458972_3 TOP2 [Saccharomyces cerevisiae]
 gi|887623|emb|CAA61422.1| ORF N2244 [Saccharomyces cerevisiae]
 gi|1301989|emb|CAA95964.1| TOP2 [Saccharomyces cerevisiae]
 gi|285814563|tpg|DAA10457.1| TPA: Top2p [Saccharomyces cerevisiae S288c]
          Length = 1428

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|259149274|emb|CAY82516.1| Top2p [Saccharomyces cerevisiae EC1118]
          Length = 1428

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|158299572|ref|XP_319665.4| AGAP008917-PA [Anopheles gambiae str. PEST]
 gi|157013582|gb|EAA14841.5| AGAP008917-PA [Anopheles gambiae str. PEST]
          Length = 1427

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 91/407 (22%), Positives = 158/407 (38%), Gaps = 35/407 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+   +     +K+ VK A+++G V  K  YH HG  ++   +
Sbjct: 692  RSIPCMLDGLKPGQRKVLYTCFK---RDDKREVKVAQLAGSVAEKSAYH-HGEMSLCSTI 747

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L+   G FG+    G   A+ RY    L      +   L    +++
Sbjct: 748  INLAQNYVGSNNINLLYPGGQFGTRLTGGKDSASPRYIFTMLSALTRHIFHPLDDPLLEY 807

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +   D    EPV  L    P +L+NG  GI  G AT IP HN  +V+     +++  +  
Sbjct: 808  QYE-DNQRIEPVWYLPI-IPMLLINGADGIGTGWATKIPNHNPRDVIANIRRMLNGDEPK 865

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
            +         P +     ++   G +     G   ++      I +              
Sbjct: 866  MLT-------PWYKNFRGVIESVGHQKYLTAGTVGLLDGKKIEISELPIGTWT------- 911

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS-----ADVILNQL 327
             Q  K  +LE +     +K    IAD ++ +     R VI    G        +   ++L
Sbjct: 912  -QTYKENVLEPLLHG-SDKAKAVIADYKEYNTDTTVRFVISFLPGEYEKLYAEEGGFHRL 969

Query: 328  YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
            ++ TS  S  S+N      Y         I   F   R +   +R  YLL   +  A  L
Sbjct: 970  FKLTSSISTASMNAFDDKNYLKRYAHANEIFMEFYTVRLDFYGKRRAYLLGMLQAEADSL 1029

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
               A  +        ++      +    EL++R + A  I++    +
Sbjct: 1030 SDKARFIMEKCNGTLVVENKK-RKALIDELIKRGYRADPIQEWKRRV 1075


>gi|19880908|gb|AAM00554.1|AF458975_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880915|gb|AAM00560.1|AF458976_3 TOP2 [Saccharomyces cerevisiae]
 gi|19880922|gb|AAM00566.1|AF458977_3 TOP2 [Saccharomyces cerevisiae]
 gi|71064112|gb|AAZ22520.1| Top2p [Saccharomyces cerevisiae]
 gi|151944446|gb|EDN62724.1| topoisomerase II [Saccharomyces cerevisiae YJM789]
          Length = 1428

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|19880929|gb|AAM00572.1|AF458978_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|19880950|gb|AAM00590.1|AF458981_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|254580647|ref|XP_002496309.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
 gi|238939200|emb|CAR27376.1| ZYRO0C15422p [Zygosaccharomyces rouxii]
          Length = 1427

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 149/400 (37%), Gaps = 38/400 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + I+D +    + +++   + R+IP++ DG KP  R++++G  +  +    K  
Sbjct: 663  DPRLTEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVIYGSFKRNITSEIKIS 721

Query: 73   KCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
              A    E    YH HG  ++   +  +AQ +  S  + ++   G+FG+    G   AA 
Sbjct: 722  TLANYVAEQT-DYH-HGPDSLAQTIIGLAQSFVGSNNIYVLNPIGSFGTRATGGKDAAAP 779

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARYPNVLVNGGGGIAV 184
            RY    L K    +         D   NY   D +  EP   L    P +L+NGG GI  
Sbjct: 780  RYISTELTKITRKIFHPFD----DPLYNYLQEDENTVEPEWYLPI-LPMLLINGGEGIGT 834

Query: 185  GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
            G +TNIP  N  ++V     +++  +++                    G TG       G
Sbjct: 835  GWSTNIPPFNPLDIVRNLRHLMNGEELEEMHPWF-------------RGWTGTIE--KIG 879

Query: 245  RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDE 302
                 + G             + +TE+P ++  + + E +   +   +K    I DL +E
Sbjct: 880  PQRYRVYGRIE----QTGPCALEITELPARMWTSTLKEHLLLGLGGNDKMKPWIKDL-EE 934

Query: 303  SDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
                G R V+ L +       +   Y    L S  S+N +       +      + +   
Sbjct: 935  QHGNGIRFVVRLTQEEMDKTRVMGFYERFKLISTISLNNMVAFDPHGKIKKYENVSEILT 994

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
             F    +    K     +      +  L+  +  +  ++ 
Sbjct: 995  EFYYVRLEYYQKRKDYMSERLQWEVEKLSFQIKFIKLIIE 1034


>gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo
 gi|297039748|pdb|3L4K|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Metal-Bound
          Length = 722

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 88/492 (17%), Positives = 173/492 (35%), Gaps = 53/492 (10%)

Query: 16  ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
           +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 247 LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 302

Query: 76  RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
           +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 303 QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 361

Query: 130 -YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMA 187
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +
Sbjct: 362 XYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWS 419

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           T IP  N  E++     ++++ +++                    G TG        R  
Sbjct: 420 TYIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR-- 464

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDR 305
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D 
Sbjct: 465 YRMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD- 519

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
              + +I L     A       Y    L S  S+  +       +      + +    F 
Sbjct: 520 DNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFY 579

Query: 366 EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
              +           + + H+   L   V      V+ I+         +EL   +   +
Sbjct: 580 YVRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRN 627

Query: 426 DIKDLIDLIDDSSYTIGSDGTMYLSEV---QTRAILELRLARLTGLGRDDIRNELNSLGI 482
            I   ++ +    +          SE        +L +R+  LT      +  +      
Sbjct: 628 AIIQELENLGFPRFNKEGKPYYG-SEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKET 686

Query: 483 EIKECLDILSSR 494
           E++  L + +  
Sbjct: 687 ELENLLKLSAKD 698


>gi|1515475|gb|AAB06960.1| gyrase A [Enterococcus faecalis]
          Length = 73

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 58/73 (79%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +GV  +K + K ARI G+VMGKYHPHG++AIY+++ RMAQ +S R +L++G GNFGSVDG
Sbjct: 1   LGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDG 60

Query: 123 DPPAAERYTECRL 135
           D  AA RYTE R+
Sbjct: 61  DGAAAMRYTEARM 73


>gi|8248367|gb|AAF74165.1|AF246746_1 DNA gyrase subunit A [Streptococcus mitis]
          Length = 76

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLD 144
           RYTE R+ K A  +L 
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|135994|sp|P27570|TOP2_CRIFA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|11001|emb|CAA42182.1| kinetoplast-associated type II DNA topoisomerase (toptIImt)
            [Crithidia fasciculata]
          Length = 1239

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 142/367 (38%), Gaps = 31/367 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     + +  K A++SG +  +  +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLK---RHSSEAAKVAQLSGYISEVSSFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEDDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+  EP       P +L NG  GI  G ATNIP+ +  +V     A+I N +   
Sbjct: 799  IDE-EGTMVEPNHYVPILPLLLCNGAVGIGFGFATNIPSFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G    K   A G+ +    G  H            V+E+P+
Sbjct: 857  QVVRNLVPWAVGFQGTVRRGPE--KEYIAVGKYTAHRNGRLH------------VSELPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRSHISSLASSDVVQRIADYSGAN-----HIDIDLIVREGSMTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +        +  +    +    +       L  L   
Sbjct: 958  SQRIYINGTVFSPDGTLSPIDADLSPVLQWHYDRRLDLYKRRRTRQIGLLEMDLARLQST 1017

Query: 394  VANLDEV 400
               ++  
Sbjct: 1018 RKFVEHF 1024


>gi|19880901|gb|AAM00548.1|AF458974_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 88/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + E
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYE 1130


>gi|5456801|gb|AAD43673.1| topoisomerase IV subunit A [Staphylococcus lugdunensis]
          Length = 82

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G V+G+YHPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKPVGNVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + A  LL D+ K+TV F 
Sbjct: 61  AKLSQLAEELLRDINKETVSFV 82


>gi|169809390|gb|ACA84165.1| GyrA [Veillonella dispar]
          Length = 87

 Score =  168 bits (424), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/81 (54%), Positives = 68/81 (83%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          +++ +  V++T EM+ S++ YA++VI+ RA+PD+RDGLKPVHRRIL+GM ++GV  +K +
Sbjct: 7  QDRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 66

Query: 72 VKCARISGEVMGKYHPHGNAA 92
           K ARI+G+VMGKYHPHG+++
Sbjct: 67 KKSARITGDVMGKYHPHGDSS 87


>gi|237511975|gb|ACQ99700.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 77

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 52/77 (67%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           + + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA 
Sbjct: 1   RSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAM 60

Query: 129 RYTECRLQKAAHFLLDD 145
           RYTE RL   A  +L +
Sbjct: 61  RYTEARLTPLAMEMLRE 77


>gi|225450069|ref|XP_002274267.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1489

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 135/349 (38%), Gaps = 31/349 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 694  LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEA---KIAQFSGYVSEHSAYH-HGEQSLAS 749

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQD+  S  + L+   G FG+    G   A+ RY   RL     FL        +
Sbjct: 750  TIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDILL 809

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            D+  N DG   EP       P VLVNG  GI  G +++IP +N  +++     +++   +
Sbjct: 810  DY-LNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGEMM 868

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +             P      G     +          ++G+        +   + ++E+
Sbjct: 869  EPMD----------PWYRGFRGTIEKTDPTKQESVGYTVKGIIE----EVNETTLRISEL 914

Query: 272  PYQVNKAAMLEKIAELV--REK-RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E +  ++   +K +   I D ++ +D       + +            L 
Sbjct: 915  PVRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTTVHFEVIMSEENLLMAKQEGLL 974

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            +   L +  S + + L   NG   +  T   IL+ F   R E   +R +
Sbjct: 975  QKFKLTTKISTSNMHLFDSNGTIKKYETPEQILEEFFHLRLEFYEKRKR 1023


>gi|19880894|gb|AAM00542.1|AF458973_3 TOP2 [Saccharomyces cerevisiae]
 gi|256270263|gb|EEU05481.1| Top2p [Saccharomyces cerevisiae JAY291]
          Length = 1428

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 88/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNILEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + E
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYE 1130


>gi|34419516|ref|NP_899529.1| topoisomerase II small subunit [Vibrio phage KVP40]
 gi|34333197|gb|AAQ64352.1| topoisomerase II small subunit [Vibrio phage KVP40]
          Length = 428

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 92/483 (19%), Positives = 176/483 (36%), Gaps = 67/483 (13%)

Query: 21  ITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGE 80
           ++  + +  L YA+  I  RA+ +  DGLKPV R +L+ +++   + +  + K A +   
Sbjct: 5   LSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAALGSS 61

Query: 81  VMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAH 140
           V    + HG  +  DALA MA +W   + +++G+GNFGS      A+ RY   +L     
Sbjct: 62  VSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKESASARYVYAKLHDNFD 121

Query: 141 FLLDDLGKDTVDFRPNYDGSFQEPV--VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
               D+        P +      P    +    P +L+NG  GIA G A NI  H+   V
Sbjct: 122 LYFKDIH-----LSPEHKDLEHVPPQFYVPV-LPMILMNGVQGIATGFACNILPHDPEWV 175

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
               +  +   +I       +++ P+F          G        +        + I  
Sbjct: 176 KKAVLEYLAGKEISE----PVVKFPEF---------YGKIEKLEHNK-------YAQIGT 215

Query: 259 TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA 318
                   VVTEIP   + A  + ++ +LV + +I    D   E+ +   R         
Sbjct: 216 VEISGLTAVVTEIPTGFDHAKYIIELDKLVEKGKISSYVDETSETFQFRVRFK------R 269

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALN--GYKPERFTLIGILKAFVAFREEVVVRRTKYL 376
            A +    + +   LQS F+ N+  ++          +  ++K FV FR   + +R +  
Sbjct: 270 GAKMTEESVIKTLKLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRIQDS 329

Query: 377 LNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
             +   RA                        +   A+ E ++R   +  I        +
Sbjct: 330 TERTEKRA------------------------SLAIAKVEFIKRVV-SGTIILFGKKRAE 364

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
            +  + +D            +L + + ++T      +  +      E+       + +  
Sbjct: 365 VAAELKADEAFS---EHVTELLNMSVDKMTDDEIARLEKDATVAQKELSYWQKTTAQKEF 421

Query: 497 LLG 499
           +  
Sbjct: 422 IKD 424


>gi|297736284|emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 135/349 (38%), Gaps = 31/349 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 694  LQRSIPSMVDGLKPGQRKILFCSFKRNFIKEA---KIAQFSGYVSEHSAYH-HGEQSLAS 749

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQD+  S  + L+   G FG+    G   A+ RY   RL     FL        +
Sbjct: 750  TIIGMAQDFVGSNNINLLLPNGQFGTRHQGGKDHASARYIYTRLSPITRFLFPKDDDILL 809

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            D+  N DG   EP       P VLVNG  GI  G +++IP +N  +++     +++   +
Sbjct: 810  DY-LNEDGQSIEPTWYVPTIPMVLVNGSEGIGTGWSSSIPNYNPRDIIANVRRLLNGEMM 868

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +             P      G     +          ++G+        +   + ++E+
Sbjct: 869  EPMD----------PWYRGFRGTIEKTDPTKQESVGYTVKGIIE----EVNETTLRISEL 914

Query: 272  PYQVNKAAMLEKIAELV--REK-RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E +  ++   +K +   I D ++ +D       + +            L 
Sbjct: 915  PVRKWTQDYKEFLESIMTGNDKIKDPFIKDYKEHNDDTTVHFEVIMSEENLLMAKQEGLL 974

Query: 329  RYTSLQSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTK 374
            +   L +  S + + L   NG   +  T   IL+ F   R E   +R +
Sbjct: 975  QKFKLTTKISTSNMHLFDSNGTIKKYETPEQILEEFFHLRLEFYEKRKR 1023


>gi|24020904|gb|AAN40847.1| GyrA [Streptococcus mitis]
          Length = 75

 Score =  167 bits (423), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/75 (60%), Positives = 59/75 (78%)

Query: 64  GVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGD 123
           GV  +K + K ARI+G+VMGKYHPHG+++IY A+ RMAQ WS R +L++G GNFGS+DGD
Sbjct: 1   GVTPDKPHKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGD 60

Query: 124 PPAAERYTECRLQKA 138
             AA+RYTE R+ K 
Sbjct: 61  GAAAQRYTEARMSKI 75


>gi|154334646|ref|XP_001563570.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060591|emb|CAM42140.1| mitochondrial DNA topoisomerase II [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1239

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 91/472 (19%), Positives = 169/472 (35%), Gaps = 40/472 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     + +  K A++SG +     +H HG  ++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHSSEASKVAQLSGYISEASAFH-HGEVSLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+  EP       P +L NG  GI  G AT IP  +  +V     A+I N +   
Sbjct: 799  MDE-EGTPVEPHHYVPILPMLLCNGAVGIGFGFATTIPPFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G        A G+ +    G  H            ++EIP+
Sbjct: 857  QVVRNLVPWAVGFQGTVRRGPDD--EFIAVGKYTAHPNGRFH------------ISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     A     +     +L
Sbjct: 903  MTSIEAFRLHISSLANTDVVQRIADYSGAN-----HIDIDLIVRDGALTTWAECEADLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRVHINGTVFSPTGTLSPIDSNLAPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSP-NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            + +  + V   R    +   A  + + ++     +K  +  +D+S   I      + +  
Sbjct: 1014 LKSTRKFVEHFRQGQIDFLNATDDTLTKTC----VKLGLVRVDESFDYILKKPITFFTRT 1069

Query: 453  QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
             T  + E        +        +     E+ +         R+L    Q+
Sbjct: 1070 STEKLQEDIAKTQAQIEELKRTTPVRMWLTELDKFDKTFQEYERVLVNSIQK 1121


>gi|331213043|ref|XP_003307791.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309298194|gb|EFP74785.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1566

 Score =  167 bits (423), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 89/445 (20%), Positives = 174/445 (39%), Gaps = 41/445 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  ++ ++ ++ T+ +    + +++   + R+IP + DG KP  R++LF   +  + 
Sbjct: 717  EPGTHLDQNVSQITYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKL- 774

Query: 67   WNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K  +K A++ G       YH HG A++   +  +AQ++  S  + ++   G FG+   
Sbjct: 775  --KAEIKVAQLGGYCSEHSAYH-HGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRAS 831

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    ++K    +      + +++    DG+  EP       P VLVNG  
Sbjct: 832  GGKDAASARYIFTNVEKITRVIFPPADDNVLNY-LTDDGTQIEPEWYIPILPMVLVNGSS 890

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +++IP +N  ++V+     + N              P  P      G TG   +
Sbjct: 891  GIGTGWSSDIPNYNPVDIVNNLRRRLANE-------------PMEPMHPWFRGFTGQITS 937

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIAD 298
             A G+    + G         D + I +TE+P +V   +  E+I   +   +K    + D
Sbjct: 938  EAPGK--YKVLGEWD----QPDEDTIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKD 991

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYK--PERFTLI 355
             R+         +I L       +    + +   L +  S+ NMV  +      +  T  
Sbjct: 992  YREYHTETTVHFIISLTERGKDAIKKEGIEKVFKLSANLSITNMVCFDPSGKIKKYSTPE 1051

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETA 413
             IL  F   R     +R +YL+N       +   L+     +  ++  +++  +      
Sbjct: 1052 QILDDFYDVRLAYYQKRKEYLVNDLTL---MYERLSNQARFVLMIIEKKLVVSNRKKAEI 1108

Query: 414  RRELMQRSWNASDIKDLIDLIDDSS 438
              EL +  +    +K       D  
Sbjct: 1109 VAELRKLEFRPFPVKAKPKTAGDPD 1133


>gi|7388329|sp|Q9Y8G8|TOP2_PENCH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5441259|dbj|BAA82356.1| type II DNA topoisomerase [Aspergillus terreus]
          Length = 1587

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 96/530 (18%), Positives = 199/530 (37%), Gaps = 50/530 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  ++ TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 715  DHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 770

Query: 73   KCARISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V G   Y  HG  ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 771  KVVELAGHVSGTTAYQ-HGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCA 829

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +  +     + +  + DG+  E  V     P +L+NG  GI  G 
Sbjct: 830  SARYIYTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGW 888

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++ P +N  ++V+    ++D   +           G     G      +GI        
Sbjct: 889  SSSTPNYNPEDIVENLKRMMDGEPLKPMQPWFRGFTGEVTAVGQDRFKFSGIIK------ 942

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-ADLRDESD 304
                              +++ +TE+P +       +K+ ++++ ++      D +D + 
Sbjct: 943  --------------ETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNT 988

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYKP-ERFTLIGILKAFV 362
                  VI++        I   L     L     + N+VA +  +  +  ++  I+K F 
Sbjct: 989  HTKVHFVIQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFY 1048

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            A R +   RR +Y L++ +     L   A  V  + +   +I              +   
Sbjct: 1049 AVRLKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKEKDFK 1108

Query: 423  NASDIKDLID-LIDDSSYTIGSDGTMYLSEVQT---RAILELRLARLTGLGRDDIRNELN 478
                +K+ +     +       D     +EV +     +L + +  LT    + +R ++ 
Sbjct: 1109 PFPKVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLRRQIG 1168

Query: 479  SLGIEIK-------ECLDILSSRSRLLGIIKQELLSVKDEL---DTPRRT 518
               +EI        E +        +     Q     + +    +  RRT
Sbjct: 1169 DKELEIDTLIKLSKEDIWKRDLEDFINEWRFQNDEEARRQRKVANMGRRT 1218


>gi|269967071|ref|ZP_06181139.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
 gi|269828330|gb|EEZ82596.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B]
          Length = 205

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 7/169 (4%)

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
           D + +    ++   + +         T+            +     +   E  ILTV+E 
Sbjct: 14  DENGKPVLDENGQPEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTEN 73

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT+  ++    R  +G+ +  VS+ N  G +V    V + D++++++D GTL+R  
Sbjct: 74  GYGKRTALSEYPTKGRGTQGVVSIKVSERN--GPVVGAIQVVEGDEMMMITDAGTLVRTR 131

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEI-----VDEAESTE 910
           V E+    R T+GV +  TA+DE VV ++RI E +       ++AE+ E
Sbjct: 132 VGEVSQVGRNTQGVTLIRTAEDESVVGLQRIEEVDDEELPTDEDAEALE 180



 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +R   GR + GVRG+ LA+ DQV+S+ +  H               +A     +      
Sbjct: 34  VRPM-GRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEYPTKGRGTQ 92

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
             +    S          Q ++  E  ++ +++ G   RT   +     R+ +G+     
Sbjct: 93  GVVSIKVSERNGPVVGAIQVVEGDE--MMMITDAGTLVRTRVGEVSQVGRNTQGVTLIRT 150

Query: 833 SKINEIGALVAVFPVNDNDQ 852
           ++     ++V +  + + D 
Sbjct: 151 AEDE---SVVGLQRIEEVDD 167



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 4/140 (2%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQ 704
           ++  T++G  +R  LS++    R  +  + +   +     +      + +++++ T  G 
Sbjct: 67  ILTVTENGYGKRTALSEYPTKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMMMITDAGT 126

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            VR  +  +    GRN+ GV  I  A+ + V+ +  +   D +        + + +    
Sbjct: 127 LVRTRVGEV-SQVGRNTQGVTLIRTAEDESVVGLQRIEEVDDEELPTDEDAEALESTGEN 185

Query: 765 ISGDTEEITSLKNDSSVEGN 784
              D  E  +  +       
Sbjct: 186 TQQDASEAPAADDAEEGNEE 205



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 661 KLSDFIQINRSGKIA-----MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
               F  +   G+ A     MKL   D+++S+   + E DIL  T+ G   R  +S    
Sbjct: 27  PEIKFKGVRPMGRTASGVRGMKLAENDQVVSLIVPSHEGDILTVTENGYGKRTALSEY-P 85

Query: 716 FAGRNSVGVRGISLAK-GDQVISMA-IVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
             GR + GV  I +++    V+    +V   +         +           G   +  
Sbjct: 86  TKGRGTQGVVSIKVSERNGPVVGAIQVVEGDEMMMITDAGTLVRTRVGEVSQVGRNTQGV 145

Query: 774 SLKNDSSVEGNISEERCQELKLKE 797
           +L   +  E  +  +R +E+  +E
Sbjct: 146 TLIRTAEDESVVGLQRIEEVDDEE 169


>gi|164663033|ref|XP_001732638.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
 gi|159106541|gb|EDP45424.1| hypothetical protein MGL_0413 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 100/556 (17%), Positives = 201/556 (36%), Gaps = 55/556 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I ++ I+D +    + +++   + R+IP + DGLKP  R+++F   +  +   K  +
Sbjct: 645  DHRIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKL---KTEI 700

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPA 126
            K  ++ G V     YH HG+ A+   +  +AQD+  S  + L+   G FGS  + G   A
Sbjct: 701  KVHQLQGYVSEHSAYH-HGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDAA 759

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY    + +    +     +  +++  + DG   EP       P VL+NG  GI  G 
Sbjct: 760  SARYIFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEGIGTGW 818

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGR 245
            +T +P +N  EVVD     +   +            G   P G      TGI        
Sbjct: 819  STFVPNYNPREVVDNLRRRMAGEEYVPMNPWYRGFVGGIEPAGPERFRVTGIAR------ 872

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDES 303
                            D     +TE+P +V      E + E V   +K    + + ++  
Sbjct: 873  --------------QLDERTWEITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYKEYH 918

Query: 304  DRQGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                   V+EL      ++     +  ++ +++ S  ++ +    G   +  T   IL+ 
Sbjct: 919  TDTSVHFVVELNPRGMEEIERVGPDTFFKLSTMLSTSNMVLFNPEGKIKKYATPQEILED 978

Query: 361  FVAFREEVVVRRTKYLLNKAR------------DRAHVLVGLAIAVANLDEVVRIIRFSP 408
            F   R     RR ++L+++ +                +   L+++      +V  +R   
Sbjct: 979  FYFVRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMIIARELSVSNKKKAAIVEELRQLK 1038

Query: 409  NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD-----GTMYLSEVQTRAILELRLA 463
                 + E   +S     ++D  +  + ++     D         L++ +   +L+ R  
Sbjct: 1039 FQAFPKVEAKAKSVTEEAVEDQEEPDEPANSNTDYDYLLSMAIYSLTQERVERLLKERDH 1098

Query: 464  RLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEG 523
              T L     R+  N    ++   L+    +            +   +    RR      
Sbjct: 1099 TETELKILLGRSPQNLWDEDLTAFLEEWDEKLAEDARNASMTTTHVVKDLKKRRAPAKRP 1158

Query: 524  LLDMEDEDCIVREDMV 539
              +      + R+   
Sbjct: 1159 KKEEGSVSPVKRQPAT 1174


>gi|8248383|gb|AAF74173.1|AF246754_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248389|gb|AAF74176.1|AF246757_1 DNA gyrase subunit A [Streptococcus oralis]
 gi|8248391|gb|AAF74177.1|AF246758_1 DNA gyrase subunit A [Streptococcus oralis]
          Length = 76

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 45/76 (59%), Positives = 59/76 (77%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAE 128
           K + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+
Sbjct: 1   KPHKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQ 60

Query: 129 RYTECRLQKAAHFLLD 144
           RYTE R+ K A  +L 
Sbjct: 61  RYTEARMSKIALEMLR 76


>gi|289677155|ref|ZP_06498045.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae FF5]
          Length = 82

 Score =  167 bits (422), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 48/79 (60%), Positives = 62/79 (78%)

Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKK 70
          E  K I  V+I DE++ SYL YA++VI+GRA+PD RDGLKPVHRR+LF M ++G +WNK 
Sbjct: 3  ELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKP 62

Query: 71 YVKCARISGEVMGKYHPHG 89
          Y K AR+ G+V+GKYHP G
Sbjct: 63 YKKSARVVGDVIGKYHPPG 81


>gi|19880943|gb|AAM00584.1|AF458980_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDPENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|19880936|gb|AAM00578.1|AF458979_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDPENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYQ 1130


>gi|24020912|gb|AAN40851.1| GyrA [Streptococcus mitis]
          Length = 74

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           V  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD 
Sbjct: 1   VTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDG 60

Query: 125 PAAERYTECRLQKA 138
            AA+RYTE R+ K 
Sbjct: 61  AAAQRYTEARMSKI 74


>gi|17136538|ref|NP_476760.1| topoisomerase 2 [Drosophila melanogaster]
 gi|135995|sp|P15348|TOP2_DROME RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|8711|emb|CAA43523.1| DNA topoisomerase type II [Drosophila melanogaster]
 gi|22946840|gb|AAF53802.2| topoisomerase 2 [Drosophila melanogaster]
          Length = 1447

 Score =  167 bits (422), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 102/505 (20%), Positives = 193/505 (38%), Gaps = 41/505 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 692  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 747

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  +  + L+E +G FG+    G   A+ RY    +      +   L    +D
Sbjct: 748  IVNLAQNFVGANNINLLEPRGQFGTRLSGGKDCASARYIFTIMSPLTRLIYHPLDDPLLD 807

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++ + DG   EP+  L    P VLVNG  GI  G +T I  +N  E++     +I+  + 
Sbjct: 808  YQVD-DGQKIEPLWYLPI-IPMVLVNGAEGIGTGWSTKISNYNPREIMKNLRKMINGQEP 865

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
             +            P     LGR    +      G  +  G   I        ++ ++E+
Sbjct: 866  SVMH----------PWYKNFLGRMEYVSD-----GRYIQTGNIQI----LSGNRLEISEL 906

Query: 272  PYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILN--- 325
            P  V      E + E +     K    I++ R+       R VI    G    +      
Sbjct: 907  PVGVWTQNYKENVLEPLSNGTEKVKGIISEYREYHTDTTVRFVISFAPGEFERIHAEEGG 966

Query: 326  --QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
              ++++ T+  S   ++    N       T I ILK +   R E   RR  +L+ +   +
Sbjct: 967  FYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYKLRREYYARRRDFLVGQLTAQ 1026

Query: 384  AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
            A  L   A  +    E  +++  +   +    EL++R +    +K+    I         
Sbjct: 1027 ADRLSDQARFILEKCEK-KLVVENKQRKAMCDELLKRGYRPDPVKEWQRRIKMEDAEQAD 1085

Query: 444  DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
            +      E       + +  +     +   +         +      + +  +   ++KQ
Sbjct: 1086 EEDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTDVKKFDYLLGMSMWMLTEEKKNELLKQ 1145

Query: 504  ELLSVKDELDTPRRTRIVEGLLDME 528
                + +     ++T  +  L D++
Sbjct: 1146 RDTKLSELESLRKKTPEMLWLDDLD 1170


>gi|5456790|gb|AAD43662.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456791|gb|AAD43663.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456793|gb|AAD43665.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
 gi|5456796|gb|AAD43668.1| topoisomerase IV subunit A [Staphylococcus warneri]
          Length = 82

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|319444109|gb|ADV58132.1| ParC [Acinetobacter baumannii]
          Length = 93

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP-- 125
           + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+GS D DP   
Sbjct: 3   SGKPKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSF 61

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
           AA RYTE +L   +  LL +LG+ T +++ N+
Sbjct: 62  AAMRYTEAKLSAYSELLLSELGQGTSEWQDNF 93


>gi|167391639|ref|XP_001739872.1| DNA topoisomerase [Entamoeba dispar SAW760]
 gi|165896290|gb|EDR23749.1| DNA topoisomerase, putative [Entamoeba dispar SAW760]
          Length = 1351

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/415 (20%), Positives = 163/415 (39%), Gaps = 34/415 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +   ++ + S+S  D +    + ++      R+IP + DGLKP  R++L+  ++  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
                 +K +++SG V  K  YH HG  ++   +  MAQ++  S  +  +   G FGS   
Sbjct: 701  KE---LKVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLG 756

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   AA RY   RL   + +L        +++  + D    EP   C   P VLVNG  
Sbjct: 757  GGKDQAAARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGAD 815

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T +  +N  ++VD C   ++  +                      G TG    
Sbjct: 816  GIGTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMKPWF-------------RGWTGQLRK 862

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G       G           ++I +TE+P Q+      + + + +  K +   ++  
Sbjct: 863  NKDG-SGYDCYGKWR----RLADDKIEITELPIQIWTDTYKQHLEKCIEAKIVKGYSEYH 917

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
              +       VI+L +  S + I   L   +S+++  ++++        +  T++ IL  
Sbjct: 918  MVNT---VHFVIDLVQPMSDEDIWTNLKLVSSVKTT-NMHLFNSEYKITKYHTVLDILAE 973

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            F   R +    R K ++     +  +L      +  + E   II      E  + 
Sbjct: 974  FCDVRMKGYEERKKAIIESMERQLMILSNKVRFIKMVIEGDLIINNRKKNELYKD 1028


>gi|319411861|emb|CBQ73904.1| probable DNA topoisomerase II [Sporisorium reilianum]
          Length = 1513

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 101/521 (19%), Positives = 203/521 (38%), Gaps = 47/521 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +     +   D +    + +++   L R+IP + DGLKP  R++ + M       +   +
Sbjct: 762  DHNTDRIPYADFINKELILFSMADNL-RSIPSVVDGLKPGQRKVFYVMFD---RKSNAEL 817

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   + G VMG+  YH HG+AA+   +  +AQ++  S  + L+E +G FG+    G   A
Sbjct: 818  KVNTLVGHVMGQAAYH-HGDAALVMTIVGLAQNFVGSNNVNLLEPRGQFGTRLLGGKDAA 876

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVG 185
            + RY    L K    L        +D+  + DG   EP   +    P VL+NG  GI  G
Sbjct: 877  SGRYIFTALPKITRALFPQADDALLDYLDD-DGQKVEPHWYIPV-VPQVLMNGAEGIGTG 934

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T++P +N  E+V          DI              P      G TG    ++ GR
Sbjct: 935  WSTSVPNYNPHEIVANLRRRTAGEDI-------------IPMKPWFRGFTGDVEEFSPGR 981

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDES 303
                + G         D +   +TE+P +   +   E + E +   EK    I D ++  
Sbjct: 982  --FKVSGRVT----QIDEKTWEITELPIRTWTSNYKESLEERIVSSEKAQATIKDYKEYH 1035

Query: 304  DRQGYRVVIELKRGASADVIL---NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
                   ++EL     A++     +  ++ +   S  ++ +   +G   +  +   IL+ 
Sbjct: 1036 TESTVNFIVELTAKGQAEIAEKGADAFFKLSCQISTTNMVLFDQDGKIKKYSSPEEILEE 1095

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV--RIIRFSPNPETARRELM 418
            F   R     +R ++L+++ +    +   L+     +  ++  +++  +        +L 
Sbjct: 1096 FYLLRLSYYQKRKEHLVDQLKL---MYDKLSNQARFVQMIINRQLVVSNRKRADIVADLR 1152

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            +  +     +    +  +       D     ++     +L + +  LT    + +  E +
Sbjct: 1153 KNDFRPFPKQGKASIAAEPEDDEPIDEEDISADSDFDYLLNMAIYNLTKEKVEKLLKERD 1212

Query: 479  SLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL--DTPRR 517
                E+K  + I  S   L      + + + +E+  +  RR
Sbjct: 1213 VKEEELK--VLIGRSPQNLWDEDLGKFIELWEEVLAEDERR 1251


>gi|5456795|gb|AAD43667.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 82

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/82 (53%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVAFI 82


>gi|313768427|ref|YP_004062107.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
 gi|312599123|gb|ADQ91147.1| hypothetical protein MpV1_224c [Micromonas sp. RCC1109 virus MpV1]
          Length = 1070

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 173/480 (36%), Gaps = 52/480 (10%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             +  ++ITD +    + +++   L R+I  + DGLKP  R++++   Q  +   K  +K 
Sbjct: 636  DVKQLNITDFVHKDLVNFSLAD-LKRSIAHVADGLKPSQRKVMYSCFQKNL---KDEMKV 691

Query: 75   ARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
            A+++  V  K  YH HG  ++ + + ++A D+  S  + L+E  G FG+  + G   +  
Sbjct: 692  AQLAAYVAEKSAYH-HGEVSLAETIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQT 750

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY   +L K A  L D      +++  + DG   EP       P VLVNG  GI  G + 
Sbjct: 751  RYIFTKLTKEARKLFDPKDDAILNYLDD-DGRSIEPDFYMPTLPMVLVNGTEGIGTGFSC 809

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGS 247
             IP  N  ++ +     ++              +G  F     +    G+          
Sbjct: 810  YIPPFNPDDIKENIKRSLEGESPIDMKPWFRGFKGKVFKDDVGLWITEGV---------- 859

Query: 248  IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
                             ++ VTE+P         E +  LV +K    I    + S  + 
Sbjct: 860  -----------WRDTGSRLKVTELPPGRWTQDYKEYLDTLVDKK---MITSFTNNSTTED 905

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
                I    G         L +   L+  F    + L       +             ++
Sbjct: 906  VDFEIFGYSG-------KDLIKDLKLRKTFHTTNMHLFHPTKGIYKYTSPE----EILKD 954

Query: 368  VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
             V  R ++   +      VL   A    +  + V ++         R    ++     ++
Sbjct: 955  FVELRLEHYKKRKAHLIDVLEKRAEMCGHKSKFVSMVIEGRLVVFKR----KKQDLEKEM 1010

Query: 428  KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              +   ID +   + +  T+  ++ + +A+++        L R    + +    ++IK  
Sbjct: 1011 SSIFPKIDGNWDYLLNTKTVEYTDERVKALMDEAKQANVDLERMIRTSHITMWKMDIKNM 1070


>gi|901985|gb|AAB60062.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 69

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/69 (63%), Positives = 56/69 (81%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RY
Sbjct: 1   YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRY 60

Query: 131 TECRLQKAA 139
           TE RL K A
Sbjct: 61  TEIRLAKIA 69


>gi|238507856|ref|XP_002385129.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
 gi|220688648|gb|EED45000.1| DNA topoisomerase II [Aspergillus flavus NRRL3357]
          Length = 1717

 Score =  166 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 84/433 (19%), Positives = 167/433 (38%), Gaps = 47/433 (10%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 768  DHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 823

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K   ++G V  M  Y  HG+ ++   +  +AQ +  S  +  +E  GNFGS    G   A
Sbjct: 824  KVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSFVGSNNVNCLEPSGNFGSRLQGGSDCA 882

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY   RL   A  +        + +  + DG   EP +     P +LVNG  GI  G 
Sbjct: 883  SARYIYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGW 941

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGR 245
            +++IP +N  ++VD    ++D  +            G     G      +GI        
Sbjct: 942  SSSIPNYNPEDIVDNLKRLMDGEETRPMQPWFRGFTGEVTDVGGDRFKFSGIIK------ 995

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
                              +++ +TE+P +       +K+ ++++ ++           D 
Sbjct: 996  --------------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIK-----DY 1036

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLF-SVNMVALNGYK--PERFTLIGILKAFV 362
            + Y    +L        +   L     L     + N+VA +      +  T+  ILK F 
Sbjct: 1037 KDYNTHTKLDEKNMKSALSEGLEEKFKLSKTVATTNLVAFDPEGRITKYATVDDILKEFY 1096

Query: 363  AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
             +R +   +R +Y L++ +        L         V  II         ++ ++ +  
Sbjct: 1097 TYRLKFYEKRKQYQLSQLQKE------LDKLSNQARFVQEIIDGKLVVSKKKKNVLVQEL 1150

Query: 423  NASDIKDLIDLID 435
                 K    + +
Sbjct: 1151 KDKGYKAFPKVAE 1163


>gi|5456781|gb|AAD43653.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G++HPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|256083186|ref|XP_002577830.1| DNA topoisomerase II [Schistosoma mansoni]
 gi|238663163|emb|CAZ34068.1| DNA topoisomerase II, putative [Schistosoma mansoni]
          Length = 1599

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 103/496 (20%), Positives = 182/496 (36%), Gaps = 50/496 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP + DGLKP  R++LF  ++  +    + +K A+++G V  +  YH HG  ++   
Sbjct: 715  ERSIPSVVDGLKPGQRKVLFTCLKRNLI---REIKVAQLAGSVAELSAYH-HGEQSLMST 770

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  L L++  G FG+    G   A+ RY    L      +        ++
Sbjct: 771  IIGLAQNFVGSNNLNLLQPIGQFGTRLSGGKDAASPRYIFTALNSLTRLIFHLEDDPLLN 830

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +   YD + + EP       P VLVNG  GI  G AT+I  +N+ E+++    ++D  + 
Sbjct: 831  YL--YDDNQRIEPEWYAPIIPMVLVNGADGIGTGYATHILNYNVIEIINNLYRMLDGEE- 887

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P+F      +   G       G            E    D + + +TE+
Sbjct: 888  ------PHRMLPNFRGFTGTIEDLGSNRYVCYG------------EVAVLDDDTLEITEL 929

Query: 272  PYQVNKAAMLEKIAELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +V      E + E +          I D ++       R VI++      +     L+
Sbjct: 930  PIRVWTQNYKESVLEPMLNGSEKVPACITDYKEYHTDVTVRFVIKMSPEKLREAESTGLH 989

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVR---RTKYLLNKARDRAH 385
            ++  LQ++ S   +               +     F E  +     R  YL       A 
Sbjct: 990  KFFKLQTVMSTGSMVCFDPLGCLKCYPNEIIIIREFYELRLTWYEKRKVYLEGVLSAEAR 1049

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETAR--RELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             L   A  V    + + +I   P  E  R  +E    S      K+ ID          +
Sbjct: 1050 KLENQARFVLEKIQSIMVIENKPKKELIRMLKEANYDSDPVKAWKESIDKAAALQEQEEA 1109

Query: 444  DGTMYLSEVQT--------RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                 +S+ +           IL + L  LT   +DD+  + ++   E+        S S
Sbjct: 1110 RTDEAVSQTEAVEAGQPDYNYILNMPLWSLTKERKDDLLAQRDAKQKELLILK--SKSPS 1167

Query: 496  RLLGIIKQELLSVKDE 511
             L     ++L     +
Sbjct: 1168 DLWREDLKKLEEEYKK 1183


>gi|19880873|gb|AAM00524.1|AF458970_3 TOP2 [Saccharomyces cerevisiae]
          Length = 1428

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/506 (17%), Positives = 175/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 667  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 722

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 723  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 781

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 782  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGWST 839

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 840  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 884

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 885  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 939

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 940  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 999

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1000 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1047

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +            +     I +++         +D  +        I 
Sbjct: 1048 IIQELENLGFPRFNKEGKPYYGSPKDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1104

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + E
Sbjct: 1105 GPEELYGTYEYLLGMRIWSLTKERYE 1130


>gi|112983266|ref|NP_001037009.1| DNA topoisomerase 2 [Bombyx mori]
 gi|6094494|sp|O16140|TOP2_BOMMO RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; Short=TOPOII
 gi|2338552|gb|AAB67168.1| topoisomerase II [Bombyx mori]
          Length = 1547

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 91/411 (22%), Positives = 163/411 (39%), Gaps = 43/411 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R+++F  ++     +K+ VK A+++G V     YH HG  ++   +
Sbjct: 721  RSIPSMIDGLKPGQRKVIFTCIK---RNDKREVKVAQLAGSVAEHSAYH-HGEQSLAMTI 776

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV-- 151
              +AQ++  S  + L+E +G FG+    G   A+ RY    +      +        +  
Sbjct: 777  VNLAQNYVGSNNINLLEPRGQFGTRLSGGKDSASPRYIFTLMSPLTRLIFHPHDDPLLVH 836

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +F  N      EPV      P VLVNG  GI  G +T IP +N  ++ +    ++D    
Sbjct: 837  EFEDN---QKIEPVYYLPIIPMVLVNGVEGIGTGWSTKIPNYNPRDIAENLRRLLDGEKP 893

Query: 212  DLDALMEIIRGPDFPTGAVILGR-TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             +            P      G   G  + Y     + ++ G           ++I +TE
Sbjct: 894  KVMH----------PWYKNFKGNVEGFGDKYVISGEAAILPG-----------DKIEITE 932

Query: 271  IPYQVNKAAMLEKIA--ELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            +P         E +    L  +K    I++ R+ +     R V+ L  G  +++    ++
Sbjct: 933  LPVGTWTHNYKENVLEPMLGTDKVKPLISEYREYNTDTTVRFVVSLLPGKLSEIEAEGIH 992

Query: 329  RYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   LQ+  S+  +    Y     +   +  IL+ F   R +  VRR  YL  + +  A 
Sbjct: 993  KVFKLQTTISMTCMNAFDYNCCLEKYDKVEEILREFYDLRVKYYVRRKDYLEGQLQAEAD 1052

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
             L   A  +    +   +I      +    EL++R +    I D       
Sbjct: 1053 KLSNQARFILKKCDKGLVIENKK-RKAMVEELIKRGYAPDPIADWKKRASK 1102


>gi|328862532|gb|EGG11633.1| hypothetical protein MELLADRAFT_46846 [Melampsora larici-populina
            98AG31]
          Length = 1259

 Score =  166 bits (420), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/416 (20%), Positives = 161/416 (38%), Gaps = 36/416 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  +  ++ +S T+ +    + +++   + R+IP + DG KP  R++LF   +  + 
Sbjct: 762  EPGTHLDHNVSQISYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKL- 819

Query: 67   WNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K  +K A++ G       YH HG  ++   +  +AQ++  S  + ++   G FG+   
Sbjct: 820  --KAEIKVAQLGGYCAEHSAYH-HGEQSLTQTIVALAQNFVGSNNINVLSPNGQFGTRAN 876

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    ++K    +        +++  N DG+  EP       P VLVNG  
Sbjct: 877  GGKDAASARYIFTNIEKITRAIFPPQDDHVLNY-LNDDGAQIEPEWYVPVLPMVLVNGSS 935

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +++IP +N  ++V+     + +  ++          P +P      G       
Sbjct: 936  GIGTGWSSDIPNYNPMDIVENLRRKLSDEPLE----------PIYPWFRGFTGHIT---- 981

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIAD 298
                 G   + G  +      D + + +TE+P +V      E +   +   +K    + D
Sbjct: 982  -PEAPGKFKVTGEWN----QPDEDTVEITELPIRVWNLTYKELLEAWITSTDKVPALVKD 1036

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLI 355
             R+         +I+L       +  + L   ++ T   S  ++      G   +  T  
Sbjct: 1037 YREYHTETTVHFIIQLTDKGKEAIKKDGLEKVFKLTGNVSTTNMVCFDSFGKIKKYSTPE 1096

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             IL+ F   R E   +R ++L+         L   A  V  + E   II      E
Sbjct: 1097 EILEDFYDIRLEYYQKRKEFLVQDLTTTYERLSNQARFVLMIIEKKLIINNRKKAE 1152


>gi|320166777|gb|EFW43676.1| DNA topoisomerase II [Capsaspora owczarzaki ATCC 30864]
          Length = 1628

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/436 (18%), Positives = 154/436 (35%), Gaps = 39/436 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  +   K  +K A+++G V     YH HG  ++   +
Sbjct: 717  RSIPSVVDGFKPSQRKVLFACFKRNL---KDEIKVAQLAGYVAEHSAYH-HGEVSLAGTI 772

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+    G   A+ RY   +L      +        +++
Sbjct: 773  VNMAQNYTGSNNINLLLPLGQFGTRLQGGKDAASARYIFTKLATLTRLIFPANDDSLLNY 832

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
                DG   EP   +    P  L+NG  GI  G ++++P  +  +VV     ++   D +
Sbjct: 833  LDE-DGQRIEPEWYMPI-LPLSLINGCEGIGTGWSSSVPNFSPRDVVANIRLMMAGQDPE 890

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                         P      G TG             + G             + +TE+P
Sbjct: 891  -------------PMCPYYNGFTGTIEPLGKA-DRFRVCGRIT----KLSATTLEITELP 932

Query: 273  YQVNKAAMLEKIAELV----REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
              V   +  E++ +L+    ++K    I D R+          + L     A      L 
Sbjct: 933  IGVWTQSYKEELEKLMEPNEKDKTPGFIKDFRENHTDTSVHFTVTLSEENMAAAEAMGLA 992

Query: 329  RYTSLQSLFSVNMVALNGYKPE---RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   + S  S   +     +       +   IL+ F   R +   +R  +L+ +  +   
Sbjct: 993  KKFKIDSTISTANMVFFDAEGRIKKYDSPQAILRDFYDLRLKYYQKRKSWLVERLTEEWT 1052

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L      +  + +   +I      +  R  L  R + A         I  +     + G
Sbjct: 1053 RLDNKVRFIQAVIKGDLVISNRKRADLMRD-LKTRGYTAFSTSTKKIKIAGAIDADDNGG 1111

Query: 446  TMYLSEVQTRAILELR 461
                ++  +  I+   
Sbjct: 1112 ADETADNDSDDIVHTN 1127


>gi|45191011|ref|NP_985265.1| AER410Wp [Ashbya gossypii ATCC 10895]
 gi|44984079|gb|AAS53089.1| AER410Wp [Ashbya gossypii ATCC 10895]
          Length = 1427

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/464 (18%), Positives = 171/464 (36%), Gaps = 50/464 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP L DGLKP  R+++FG  +  +   K  +K   ++  V G+  YH H   ++   +
Sbjct: 697  RSIPHLLDGLKPSQRKVIFGSFKRNIM--KTEIKVQELAAYVSGQTAYH-HTEQSLVQTI 753

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  +  + L+  +G FG+    G   AA RY   +L   +  + + L    + +
Sbjct: 754  VSLAQDFVGANNIYLLMPRGAFGTRATGGKDAAAARYIFTQLNSISKHVFNPLDNPLLTY 813

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + D    EP   + A  P VLVNG  GI  G +T+IP  N  ++V+    ++   + D
Sbjct: 814  VQD-DEKTVEPEWYVPA-LPMVLVNGAEGIGTGWSTSIPPFNPIDIVNNLRKLMRGDEPD 871

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
              A                 G  G             I G             + +TE+P
Sbjct: 872  DMAPWF-------------RGWNGTMQKIDA--QRYRIFGRIE----QVGENTVEITELP 912

Query: 273  YQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
             +     + E +   +   E+    + D++++      + V+ L             Y  
Sbjct: 913  ARTWTTTIKEHLLLALSGNERTKPWVKDMQEQ-HGATIKFVVTLTPEEMERTRKIGFYER 971

Query: 331  TSLQSLFSVNMVALNGYKPERFTLIG----------ILKAFVAFREEVVVRRTKYLLNKA 380
              L S  S++ + L     +                +   F   R++ ++ R ++ L K 
Sbjct: 972  FKLISTVSLSNMVLFDAHNKIKKYNDVKEILTDFFYVRLEFYQKRKDYMIERLQWQLEKL 1031

Query: 381  RDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYT 440
              +   +  +      +DE +R+ + + +      E +      ++ K   + ID+    
Sbjct: 1032 SFQVKFIKMI------IDEELRVTKKARSVLMKELESLGFPRVDAEGKPHFEKIDEDLEE 1085

Query: 441  IGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
            + +      +E       E+    +     +        LG++I
Sbjct: 1086 MDASDPEEFAEELDEQGGEVADENVVVGPLEKFGTYEYLLGMKI 1129


>gi|308810347|ref|XP_003082482.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
 gi|116060951|emb|CAL56339.1| putative DNA topoisomerase II (ISS) [Ostreococcus tauri]
          Length = 1099

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 139/362 (38%), Gaps = 41/362 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  ++ +   +K A++SG V     YH HG A++   +
Sbjct: 720  RSIPSMVDGFKPSQRKVLFSCFKRKLKSD---IKVAQLSGYVSEHSAYH-HGEASLAMTI 775

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQD+  S  + L+   G FG+    G   A+ RY   RL +    +  +      D 
Sbjct: 776  VNLAQDFVGSNNINLLVPSGQFGTRLQGGKDHASPRYIFTRLHEICRAIFPECD----DA 831

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              NY   DG   EP       P VLVNG  GI  G +T+IP  N  +++     V++  +
Sbjct: 832  LLNYLDEDGQRIEPDFYYPVLPLVLVNGAEGIGTGWSTSIPNFNPRDIISNIKLVLEGEE 891

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                                      I      G     + G   I     D   + +TE
Sbjct: 892  ARQMHPW------------YRNFNGSIVEEIVKGDSRYTVTGSYII----RDECTLEITE 935

Query: 271  IP---YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGA--SADVILN 325
            +P   +  +    LE +     +     I D ++         VI +      +A     
Sbjct: 936  LPLRSWTTDYKDFLEDMLAPKTKNEKPFITDYKEYHTDTTVHFVITMPPENLAAAQSAPG 995

Query: 326  QLYRYTSLQSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
             + +   L +  S++ + L        +  + I +L+AF+  R +   +R   L+  A  
Sbjct: 996  GIEKKFKLSTKVSISNMHLFNEHGAITKYASPIDVLQAFIPLRLKAYAQRRDMLIRLAES 1055

Query: 383  RA 384
            + 
Sbjct: 1056 QL 1057


>gi|70568834|dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 101/472 (21%), Positives = 169/472 (35%), Gaps = 40/472 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            + R+IP + DGLKP  R+ILF   +          K A+ SG V     YH HG  ++  
Sbjct: 703  VQRSIPSMVDGLKPGQRKILFCSFKRNFVREA---KVAQFSGYVSEHSAYH-HGEQSLAG 758

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQD+  S  + L+   G FG+    G   A+ RY   +L     FL        +
Sbjct: 759  TIIGMAQDYVGSNNINLLLPIGQFGTRGQGGKDHASARYVFTQLSPVTRFLFPKADDILL 818

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            D+  N DG   EP       P VLVNG  GI  G ++ +P +N  +++     ++++   
Sbjct: 819  DY-LNEDGQSIEPTWYVPIIPMVLVNGSEGIGTGWSSYVPNYNPVDIIANIRHLLNDEAT 877

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +          P  P     LG          G  S  + G+        D   + + E+
Sbjct: 878  E----------PMHPWYKGFLGSVEKTATKEAG-ASYTVSGIIE----EVDDTTLCIKEL 922

Query: 272  PYQVNKAAMLEKIAELVREK---RIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P +       E +  +  E    +   I   RD S  +    ++ +K           L 
Sbjct: 923  PIRRWTQDYKEFLESVSAENDKSKDPFIEGCRDYSGSELVNFLVGMKPEKLEAAKREGLL 982

Query: 329  RYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +   L +  S   + L   K    +  T   IL+ F   R E+  +R K LL+       
Sbjct: 983  KKFKLTTSISTCNMHLFDSKGVIKKYDTPEQILEEFFYIRLELYEKRKKVLLDILEHDML 1042

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
                    +  + E   I+      +  R    +        K+  ++    +   G + 
Sbjct: 1043 KCDNKYRFIRCVVEGSIIVSNRKRTDVFRELKEKGFTPFPKKKNRAEVAIAGATDDGEET 1102

Query: 446  TM--------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
                       +S      +L L +  LT     ++R E + L  E++E   
Sbjct: 1103 EENSEVPIAPGVSSSDYDYLLSLAIGTLTTEKMQELRAERDKLMQEVEELKQ 1154


>gi|4928201|gb|AAD33461.1|AF129762_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 59/74 (79%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 131 TECRLQKAAHFLLD 144
           TE R+ K A  +L 
Sbjct: 61  TEARMSKIALEMLR 74


>gi|325191142|emb|CCA25924.1| DNA topoisomerase putative [Albugo laibachii Nc14]
          Length = 1141

 Score =  165 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 153/419 (36%), Gaps = 22/419 (5%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP   DGLK   R++LF  ++  +      +K A+++G       YH HG A+++  +
Sbjct: 673  RSIPSAIDGLKTSQRKVLFACLKRKLFQE---MKVAQLAGYCSEHTAYH-HGEASLHSTI 728

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  + L+   G FG+    G   A+ RY   +L K    +  +     +++
Sbjct: 729  VNMAQDYVGSNNITLLYPSGQFGTRLQGGKDAASPRYIFTKLNKHTRLIYPEEDDALLNY 788

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P +L+NG  GI  G +T IP HN  EV+D  + ++D+ +   
Sbjct: 789  NDD-DGISVEPQYYVPIIPMLLINGSEGIGTGWSTYIPNHNPIEVIDRMLHLLDSSNSRD 847

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +      P F      +   G++     G    +      I +    +      +  +
Sbjct: 848  HGVPPASLLPWFRGFRGSIEAAGLQTYTTQGTIRHLNPTTLEILELPIGKWIDDYKKTLW 907

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                  + +K+     E    +    R +  R      +++           +    T+ 
Sbjct: 908  ----DFLQKKLIRSFTEHHSEEHVCFRIQLSRADSTFFLDMSPIELVRFFKLESKLNTNN 963

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN--KARDRAHVLVGLA 391
               F  N            +   ++KAF+  R ++  RR +YL+   +            
Sbjct: 964  MHAFDPNYTLQ-----RFSSSDDVIKAFLPVRLDLYNRRKEYLVKKQQCDVLELQNRVRF 1018

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            IA  +  ++  I+            L  + +         +   + +     D  + +S
Sbjct: 1019 IAQVSAGDLQCILTRKMTKHQVAAVLDSQGYTPEQEFRYDEKSTNDNPASDFDYLLNMS 1077


>gi|331251443|ref|XP_003338318.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|309317308|gb|EFP93899.1| DNA topoisomerase 2 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1164

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 163/407 (40%), Gaps = 39/407 (9%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                  ++ ++ ++ T+ +    + +++   + R+IP + DG KP  R++LF   +  + 
Sbjct: 736  EPGTHLDQNVSQITYTEFINKELILFSMADNI-RSIPSMVDGFKPGQRKVLFACFKRKL- 793

Query: 67   WNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K  +K A++ G       YH HG A++   +  +AQ++  S  + ++   G FG+   
Sbjct: 794  --KAEIKVAQLGGYCSEHSAYH-HGEASLTQTIVGLAQNFVGSNNINVLSPNGQFGTRAS 850

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   A+ RY    ++K    +      + +++    DG+  EP       P VLVNG  
Sbjct: 851  GGKDAASARYIFTNVEKITRVIFPPADDNVLNY-LTDDGTQIEPEWYIPILPMVLVNGSS 909

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +++IP +N  ++V+     + N              P  P      G TG   +
Sbjct: 910  GIGTGWSSDIPNYNPVDIVNNLRRRLANE-------------PMEPMHPWFRGFTGQITS 956

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR--EKRIVDIAD 298
             A G+    + G         D + I +TE+P +V   +  E+I   +   +K    + D
Sbjct: 957  EAPGK--YKVLGEWD----QPDEDTIEITELPVRVWNQSYKEQIEAWINSTDKIPALVKD 1010

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYK--PERFTLI 355
             R+         +I L       +    + +   L +  S+ NMV  +      +  T  
Sbjct: 1011 YREYHTETTVHFIISLTERGKDAIKKEGIEKVFKLSANLSITNMVCFDPSGKIKKYSTPE 1070

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
             IL  F   R     +R +YL+N       +   L+     +  ++ 
Sbjct: 1071 QILDDFYDVRLAYYQKRKEYLVNDLTL---MYERLSNQARFVLMIIE 1114


>gi|157866980|ref|XP_001682045.1| mitochondrial DNA topoisomerase II [Leishmania major]
 gi|68125496|emb|CAJ03357.1| mitochondrial DNA topoisomerase II [Leishmania major strain Friedlin]
          Length = 1236

 Score =  165 bits (418), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 169/480 (35%), Gaps = 56/480 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G   AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I N +   
Sbjct: 799  MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G               +  G            +  ++EIP+
Sbjct: 857  QVVRNLVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRLHISSLASADVVQRIADYSGAN-----HIDIDLIVRDGSLTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRIYINGTVFSPAGTLSPIDSDLSPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
            + +  + V   R                       D ++  DD+ +       +   +  
Sbjct: 1014 LQSTRKFVEHFRQGQ-------------------IDFLNATDDTLHKTCVKLGLVRVDES 1054

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               IL+  +   T    + ++ ++     +I+E     ++  ++      +      E +
Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKR--TTPVKMWLTELDKFDKTFQEYE 1112


>gi|219121754|ref|XP_002181225.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217407211|gb|EEC47148.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1165

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 99/467 (21%), Positives = 174/467 (37%), Gaps = 46/467 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            R+IP   DGLKP  R++L+   +  +   K  +K A+++G       YH HG A++   +
Sbjct: 708  RSIPSAIDGLKPSQRKVLYACFKRKL---KSEIKVAQLTGYCAEHTAYH-HGEASLQSTI 763

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  + L+   G FG+  + G   A+ RY    L   A  L  +      D 
Sbjct: 764  IGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYTYLAPIARSLFPEAD----DT 819

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              +Y   DG   EP   C   P ++VNG  GI  G +T IP H+  +V++  +A +D  +
Sbjct: 820  LLSYLEDDGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPHSANDVLEYILAKLDGAE 879

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
              L  +    RG          G        + GR S +                I++ E
Sbjct: 880  R-LPKIHPFARGFQGRIEPDPNGN----GYVSFGRSSCI------------SDRTILIDE 922

Query: 271  IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            +P +            L++ +   ++    +  +      ++ LK    A +    L + 
Sbjct: 923  LPLRCWTNKYK---GILLKMRDRGEVTSFVENHNTSKVSFLVTLKSAQLARMTQAGLEKS 979

Query: 331  TSLQSLFS-VNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRR---TKYLLNKARDRA 384
              L++     NM A N      +  T   I++AF   R ++   R    + LLN      
Sbjct: 980  FKLKTNLQTTNMHAFNKDGQICKFDTAESIVEAFFPVRMQLYQDRIALLQSLLNYEASIL 1039

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI--- 441
                G   AV + D  +   R S    + + +      +        + +          
Sbjct: 1040 RNKAGFIKAVTSGDIDLTSGRRSKQETSKKLKEHGFLDSVELNAIKNENVLWKRRQFASE 1099

Query: 442  GSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
              +G   L  +    +L + L+ LT     ++     +   E++E  
Sbjct: 1100 KGEGGSNLEPMNFDYLLNMPLSSLTSEKIRELGEHAATKDKELEEMK 1146


>gi|322497870|emb|CBZ32946.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1236

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 170/480 (35%), Gaps = 56/480 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I N +   
Sbjct: 799  MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G               +  G            +  ++EIP+
Sbjct: 857  QVVRNLVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRLHISSLASADVVQRIADYSGAN-----HIDIDLIVRDGSLTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRIYINGTVFSPTGTLSPIDSDLSPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
            + +  + V   R                       D ++  DD+ +       +   +  
Sbjct: 1014 LQSTRKFVEHFRQGQ-------------------IDFLNATDDTLHKTCVKLGLVRVDES 1054

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               IL+  +   T    + ++ ++     +I+E     ++  ++      +      E +
Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKR--TTPVKMWLTELDKFDKTFQEYE 1112


>gi|317419224|emb|CBN81261.1| DNA topoisomerase 2-alpha [Dicentrarchus labrax]
          Length = 968

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 123/291 (42%), Gaps = 31/291 (10%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DGLKP  R++LF   +     +K+ VK A+++G V  M  YH HG  ++   
Sbjct: 699 ERSIPCLVDGLKPGQRKVLFCCFK---RNDKREVKVAQLAGSVAEMSAYH-HGEVSLMMT 754

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  +AQ++  S  + L++  G FG+    G   A+ RY    L   A  +   +  + + 
Sbjct: 755 IVGLAQNFVGSNNMNLLQPLGQFGTRLHGGKDSASPRYIFTMLSPLARLVFPSVDDNLLK 814

Query: 153 FRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +  NYD + + EP   +    P VLVNG  GI  G A+ IP +N+ E+V   +  + N D
Sbjct: 815 Y--NYDDNQRVEPEWYMPI-IPTVLVNGAEGIGTGWASKIPNYNIREIVSN-IHRMLNGD 870

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             L  L      P++      +          +G  +I+      I +            
Sbjct: 871 EPLPML------PNYKGFRGTIEHVMDNQFMNSGEVAIIDSTTIEISELPVKSWT----- 919

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASAD 321
              Q  K  +LE +     EK    I D R+       R VI++      +
Sbjct: 920 ---QTYKENVLEPMLNGT-EKVPSLITDFREYHTDTTVRFVIKMTEEKLRE 966


>gi|146082133|ref|XP_001464455.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
 gi|134068547|emb|CAM66843.1| mitochondrial DNA topoisomerase II [Leishmania infantum JPCM5]
          Length = 1236

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 170/480 (35%), Gaps = 56/480 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I N +   
Sbjct: 799  MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G               +  G            +  ++EIP+
Sbjct: 857  QVVRNLVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRLHISSLASADVVQRIADYSGAN-----HIDIDLIVRDGSLTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRIYINGTVFSPTGTLSPIDSDLSPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
            + +  + V   R                       D ++  DD+ +       +   +  
Sbjct: 1014 LQSTRKFVEHFRQGQ-------------------IDFLNATDDTLHKTCVKLGLVRVDES 1054

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               IL+  +   T    + ++ ++     +I+E     ++  ++      +      E +
Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKR--TTPVKMWLTELDKFDKTFQEYE 1112


>gi|82502212|gb|ABB80134.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 94

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 63/92 (68%), Gaps = 3/92 (3%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           ++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS D DP
Sbjct: 1   LKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DP 59

Query: 125 P--AAERYTECRLQKAAHFLLDDLGKDTVDFR 154
              AA RYTE +L   +  LL +LG+ T +++
Sbjct: 60  KSFAAMRYTEAKLSAYSELLLSELGQGTSEWQ 91


>gi|4929497|gb|AAD34021.1|AF150876_1 DNA topoisomerase II [Leishmania donovani]
          Length = 1236

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 170/480 (35%), Gaps = 56/480 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I N +   
Sbjct: 799  MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G               +  G            +  ++EIP+
Sbjct: 857  QVVRNLVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRLHISSLASADVVQRIADYSGAN-----HIDIDLIVRDGSLTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRIYINGTVFSPTGTLSPIDSDLSPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
            + +  + V   R                       D ++  DD+ +       +   +  
Sbjct: 1014 LQSTRKFVEHFRQGQ-------------------IDFLNATDDTLHKTCVKLGLVRVDES 1054

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               IL+  +   T    + ++ ++     +I+E     ++  ++      +      E +
Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKR--TTPVKMWLTELDKFDKTFQEYE 1112


>gi|5456789|gb|AAD43661.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 62/82 (75%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|329124305|gb|AEB72030.1| DNA topoisomerase IV subunit C [Aeromonas sp. 34(2011)]
          Length = 82

 Score =  165 bits (417), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 41/83 (49%), Positives = 58/83 (69%), Gaps = 3/83 (3%)

Query: 49  LKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           LKP  RRI++ M ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R 
Sbjct: 1   LKPDQRRIVYAMSELGLNASSKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRY 60

Query: 109 LLIEGQGNFGSVDGDPP--AAER 129
            L++GQGN+G+ D DP   AA R
Sbjct: 61  PLVDGQGNWGAPD-DPKSFAAMR 82


>gi|195397652|ref|XP_002057442.1| GJ18099 [Drosophila virilis]
 gi|194141096|gb|EDW57515.1| GJ18099 [Drosophila virilis]
          Length = 1445

 Score =  164 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 93/412 (22%), Positives = 161/412 (39%), Gaps = 39/412 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 693  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEMSLQMT 748

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    + 
Sbjct: 749  IVNLAQNFVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLQ 808

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP+      P VLVNG  GI  G +T I  +N  E++     +I+  ++ 
Sbjct: 809  YQVD-DGQRIEPIWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRELISNLRRMINGEEL- 866

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                         P         G  +  + G      R V           +I +TE+P
Sbjct: 867  ------------LPLHPWYKNFQGSMDYVSDG------RYVHSGNIQLLPDNRIEITELP 908

Query: 273  YQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADV-----IL 324
              V      E + E++     K    I++ R+       R V+    G    +       
Sbjct: 909  VGVWTQNYKENVLEVLSNGTEKVKAVISEYREYHTDTTVRFVVSFAPGEFERLRSEPGGF 968

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +++ + +S  S   ++    N       +   IL+ F   R E   RR  YL+ +   ++
Sbjct: 969  HRVLKLSSSLSTNQMHAFDENNCLRRFPSPKDILQEFYKLRLEYYNRRKDYLVGQLTAQS 1028

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD 436
              L   A  +    E    I      +    EL++R +    +K+    I  
Sbjct: 1029 DRLSDQARFILEKCEKKLTIEN-KQRKAMIEELIKRGYRPDPVKEWQRRIKM 1079


>gi|161339333|gb|ABX64407.1| DNA topoisomerase IV [Streptococcus suis]
 gi|164612282|gb|ABY63610.1| topoisomerase IV [Streptococcus suis]
 gi|164612284|gb|ABY63611.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 61/84 (72%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRP 155
           E RL + +  LL D+ K+TVDF  
Sbjct: 61  EARLSQLSGELLKDIDKNTVDFVW 84


>gi|307211209|gb|EFN87409.1| DNA topoisomerase 2 [Harpegnathos saltator]
          Length = 1492

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 92/501 (18%), Positives = 181/501 (36%), Gaps = 52/501 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP++ DG KP  R+++F  ++     +++ VK A+++G V     YH HG  ++   +
Sbjct: 703  RSIPNMIDGFKPGQRKVMFTCLK---RNDRREVKVAQLAGSVAEHSAYH-HGETSLMATI 758

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              +AQ++  S  + L++  G FG+    G   A+ RY    L   A ++        +  
Sbjct: 759  INLAQNFVGSNNINLLQPIGQFGTRLAGGKDAASPRYIFTMLSPLARYIFHKHDDALLKH 818

Query: 154  RPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
               YD + + EPV      P VLVNG  GI  G  T IP +N  E+++    ++D  D  
Sbjct: 819  E--YDDNQKIEPVFYIPVIPMVLVNGADGIGTGWMTKIPNYNPREIIENLQRMMDGIDPK 876

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                         P         G+  +    R  I        E +    +++ +TE+P
Sbjct: 877  -------------PMTPYYKNFKGVVESCGDFRYVI------SGEISVIGPDKLEITELP 917

Query: 273  YQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
                     E + E +    +K    I D ++ +       ++ L R    ++  + L++
Sbjct: 918  IGTWTQTYKETVLEPMLHGSDKTPAVITDYKEYNTDTAVHFIVMLNRDKLLELEKDGLHK 977

Query: 330  YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
               +Q+  ++  +              +++    F         K  ++    R   L G
Sbjct: 978  AFKIQTTMTITSMCAFDENQCLNKYDSVIQILKRF--------YKVRMDTYHKRKDYLEG 1029

Query: 390  LAIAV-ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
            +  A  A L    R I    +         ++   A  ++   +     ++ +  +    
Sbjct: 1030 VLQAEAAKLSNQARFILEKCDGTLVIENKKKKDMIAELVRRNYESDPVVAWKLSQNREQV 1089

Query: 449  LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSV 508
            L EV          A    +  ++    L                +  LL    +++  +
Sbjct: 1090 LEEVAENDDENAAAATAITMESENFDYLLGMTM-----WTLTKEKKDDLLRQRDEKVAEL 1144

Query: 509  KDELDTPRRTRIVEGLLDMED 529
            K       RT I     D+++
Sbjct: 1145 KRLQA---RTPISLWKEDLDN 1162


>gi|172998|gb|AAB36610.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 1429

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/506 (17%), Positives = 176/506 (34%), Gaps = 52/506 (10%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            +  + I+D +    + +++   + R+IP++ DG KP  R++L+G  +  +   K  +K A
Sbjct: 668  LKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVA 723

Query: 76   RISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAER 129
            +++  V     YH HG  ++   +  +AQ++  S  + L+   G FG+    G   AA R
Sbjct: 724  QLAPYVSECTAYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAAR 782

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMAT 188
            Y    L K    +          +    D    EP   L    P +LVNG  GI  G +T
Sbjct: 783  YIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI-LPMILVNGAEGIGTGRST 840

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
             IP  N  E++     ++++ +++                    G TG        R   
Sbjct: 841  YIPPFNPLEIIKNIRHLMNDEELEQMHPWF-------------RGWTGTIEEIEPLR--Y 885

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQ 306
             + G             + +TE+P +   + + E +   +   +K    I D+ ++ D  
Sbjct: 886  RMYGRIE----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-D 940

Query: 307  GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
              + +I L     A       Y    L S  S+  +       +      + +    F  
Sbjct: 941  NIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYY 1000

Query: 367  EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
              +           + + H+   L   V      V+ I+         +EL   +   + 
Sbjct: 1001 VRLEY-------YQKRKDHMSERLQWEVEKYSFQVKFIK-----MIIEKELTVTNKPRNA 1048

Query: 427  IKDLIDLIDDSSYTIGSDGTMY-LSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
            I   ++ +    +           ++     I +++         +D  +        I 
Sbjct: 1049 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK---GATSDEEDEESSHEDTENVIN 1105

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDE 511
               ++  +   LLG+    L   + +
Sbjct: 1106 GPEELYGTYEYLLGMRIWSLTKERYQ 1131


>gi|322493315|emb|CBZ28601.1| DNA topoisomerase ii [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1497

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 154/412 (37%), Gaps = 45/412 (10%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGM 60
            +  ++ +E  +  +  VS  D +    + ++   I    R+IP + DG KP  R+ILF  
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFS---IADCERSIPSVIDGFKPGQRKILFSC 699

Query: 61   MQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +  +  +   +K  +++G V     YH HG  ++   +  MAQD+  S  + L+   G 
Sbjct: 700  FKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQ 755

Query: 117  FGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FG+    G   AA RY   RL + A  +        V+++ + DG   EP       P V
Sbjct: 756  FGTRLHGGKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMV 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            LVNG  GI  G +T+IP +N  E++     ++   ++                     G 
Sbjct: 815  LVNGTTGIGTGFSTSIPNYNPLEIISNLERLMQGEEVHKMQPWYF-------------GF 861

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            TG       G+   V  G   I         + +TE+P  V      + + ++  +    
Sbjct: 862  TGTMEEKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQTYKKFLEDMREK---E 912

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK----PE 350
             +   R+ +        + L        +   +         +      +   K     +
Sbjct: 913  LVVQYREHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITK 972

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
                  +LK F   R +   +R +YLL + R    +   L   V  + EVV 
Sbjct: 973  YSDAESVLKEFYLVRLDYYAKRKQYLLGELRR---LTSKLENMVRFVREVVE 1021


>gi|237511977|gb|ACQ99701.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score =  164 bits (416), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 1   SARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 134 RLQKAAHFLLDD 145
           RL   A  +L +
Sbjct: 61  RLTPLAMEMLRE 72


>gi|329124307|gb|AEB72031.1| DNA topoisomerase IV subunit C [Aeromonas sp. 58(2011)]
          Length = 84

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 41/82 (50%), Positives = 58/82 (70%), Gaps = 3/82 (3%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++
Sbjct: 4   QRRIIYAMSELGLSASAKYKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLVD 63

Query: 113 GQGNFGSVDGDPP--AAERYTE 132
           GQGN+G+ D DP   AA R+TE
Sbjct: 64  GQGNWGAPD-DPKSFAAMRFTE 84


>gi|124108793|gb|ABM90973.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 73

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 43/71 (60%), Positives = 58/71 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGSV 120
           L++GQGNFGS 
Sbjct: 61  LVDGQGNFGSR 71


>gi|212645657|ref|NP_495440.4| Chromosome INstability family member (cin-4) [Caenorhabditis
           elegans]
 gi|158514533|gb|ABW69249.1| chromosome instability 4 [Caenorhabditis elegans]
 gi|187357187|gb|AAB93429.4| Chromosome instability protein 4, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 842

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 108/532 (20%), Positives = 195/532 (36%), Gaps = 72/532 (13%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDALA 98
           +IP L DGLKP  R++LF   +     NK+ VK A+++G V  +  YH HG  ++   + 
Sbjct: 313 SIPCLVDGLKPGQRKVLFACFK---RANKREVKVAQLAGAVAEISAYH-HGEQSLMGTIV 368

Query: 99  RMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFR 154
            +AQD+  S  + L+   G FG+    G   A+ R    +L +    L      + + F 
Sbjct: 369 NLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRTLFPAHDDNVLRFL 428

Query: 155 PNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             Y+ + + EP   C   P VLVNG  G   G +TNIP +N  E+V     +I       
Sbjct: 429 --YEENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKNIKRLIAG----- 481

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVI----RGVSHIEKTSGDREQIVVT 269
                               +  +   Y   RG I+     R   + E +  D   I +T
Sbjct: 482 ------------------EPQKALAPWYKNFRGKIIQIDPSRFACYGEVSVLDDNTIEIT 523

Query: 270 EIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           E+P +       EK+ E +    +K+   I D ++       + V++L  G   ++   Q
Sbjct: 524 ELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRELERGQ 583

Query: 327 -LYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKAR- 381
            L++   LQ++ +   + L           +   I + F   R+E  V+R +YLL   + 
Sbjct: 584 DLHQVFKLQAVINTTCMVLFDAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEYLLGVLQA 643

Query: 382 --DRAHVLVGLAIAVANLDEVVR----------IIRFSPNPETARRELMQRSWNASDIKD 429
              R        +A  N   V+           +I+   + +  ++    +         
Sbjct: 644 QSKRLTNQARFILATINNKIVLENKKKTAIVDVLIKMKFDADPVKKWKEDQKLKELRESG 703

Query: 430 LIDLIDDSSYTIGSDGTMYLSEV---------QTRAILELRLARLTGLGRDDIRNELNSL 480
            I+L +D    +  +    +S               ++ L L +L+   ++ +  E    
Sbjct: 704 EIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSEEEKNKLIKESEEK 763

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP---RRTRIVEGLLDMED 529
             E++           +  +           L      RRT      +  + 
Sbjct: 764 MAEVRVLEKKTWQDLWITDLDNFMSELTSRRLARKLSLRRTATRWYAMICQR 815


>gi|52352239|gb|AAU43281.1| DNA topoisomerase [Acinetobacter baumannii]
          Length = 92

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 46/93 (49%), Positives = 62/93 (66%), Gaps = 3/93 (3%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G++ + K  K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  LIEGQGN+ S
Sbjct: 1   MSELGLKSSGKPKKSARTVGDVLGKYHPHGDFACYEAMVLMAQPFSYRYPLIEGQGNWAS 60

Query: 120 VDGDPP--AAERYTECRLQKAAHFLLDDLGKDT 150
            D DP   AA RYTE +L   +  LL +LG+ T
Sbjct: 61  PD-DPKSFAAMRYTEAKLSAYSELLLSELGQGT 92


>gi|224458668|gb|ACN43197.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 239

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 112/257 (43%), Positives = 162/257 (63%), Gaps = 26/257 (10%)

Query: 264 EQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVI 323
           E+I+VTE+PYQVNK  ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VI
Sbjct: 2   ERIIVTELPYQVNKGNLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVI 61

Query: 324 LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
           LN LY+ T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+ RRT Y L KA  R
Sbjct: 62  LNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEAR 121

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
           AH+L GL +A+ +LD V+ +IR S   E AR  L+++                       
Sbjct: 122 AHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ----------------------- 158

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                L+E Q +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++
Sbjct: 159 ---FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIRE 215

Query: 504 ELLSVKDELDTPRRTRI 520
           EL  +K+  +  RRT I
Sbjct: 216 ELTEIKERFNDERRTEI 232


>gi|9624859|gb|AAF86355.1| DNA Topoisomerase II [Leishmania infantum]
          Length = 1236

 Score =  164 bits (415), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 169/480 (35%), Gaps = 56/480 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+F EP       P +L NG  GI  G AT IP+ +  +V      +I N +   
Sbjct: 799  MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRGMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  I+       G V  G               +  G            +  ++EIP+
Sbjct: 857  QVVRNIVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRLHISSLASADVVQRIADYSGAN-----HIDIDLIVRDGSLTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRIYINGTVFSPTGTLNPIDSDLSPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
            + +  + V   R                       D ++  DD+ +       +   +  
Sbjct: 1014 LQSTRKFVEHFRQGQ-------------------IDFLNATDDTLHKTCVKLGLVRVDES 1054

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               IL+  +   T    + ++ ++     +I+E     ++  ++      +      E +
Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKR--TTPVKMWLTELDKFDKTFQEYE 1112


>gi|115392233|gb|ABI96917.1| topoisomerase [Trypanosoma congolense]
          Length = 1439

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 131/371 (35%), Gaps = 34/371 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   
Sbjct: 682  ERSIPSVVDGLKPGQRKIMFSAFKRNLV---RSIKVAQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  +  + L+   G FG+    G   AA RY   RL   A  +        VD
Sbjct: 738  IVGLAQDYVGANNIPLLHRDGQFGTRLQGGKDHAAGRYIFTRLTNIARRIYHPSDDFVVD 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   D+ 
Sbjct: 798  YKDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLRRLLSGDDLR 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                G TG       G+   V  G   +         + +TE+P
Sbjct: 857  PMKPWYF-------------GFTGTIEEREKGK--FVSSGRYTVRPDGV----VCITELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN-QLYRYT 331
                 +   + + +L        +   R+ +        + +             L    
Sbjct: 898  IGTWTSQYKKFLEDLRE---REVVVQYREHNTDVTVDFEVFIHPEVLQQWTNQGCLEDKL 954

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L+       +     +      +        F    +    +            ++ L 
Sbjct: 955  QLREYIHATNIIAFDREGRITKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRSVLKLE 1014

Query: 392  IAVANLDEVVR 402
              V  ++EVV 
Sbjct: 1015 NMVRFVNEVVN 1025


>gi|324500583|gb|ADY40270.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1514

 Score =  164 bits (415), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 94/488 (19%), Positives = 184/488 (37%), Gaps = 59/488 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   
Sbjct: 710  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMAT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   + +  + 
Sbjct: 766  IINLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSVDESVLR 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   Y+ + + EP   C   P VLVNG  GI    +T +P +N  E+V+    +I     
Sbjct: 826  FL--YEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVENIRLMIRGEQP 883

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P F      + +        +G  +I+  G   I +             
Sbjct: 884  RHMV-------PWFKNFRGTIEQMDENRFVCSGEIAIIGEGTIEITELPIRTWT------ 930

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
              Q  K ++LE + +   +K+   I D ++       + ++++         +  L++  
Sbjct: 931  --QTYKESVLEPMLDG-SDKQPAMITDFKEYHTDTTVKFLVKMTPEKLRAAQMEGLHKVF 987

Query: 332  SLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRT---KYLLNKARDRAH 385
             LQ++ +   + L               I   F   R++  + R      +L     R  
Sbjct: 988  KLQTVINTTSMVLFDAMGCLRRFNTVEEICTDFFETRKKKYIERKAFQMGMLRAQSQRLS 1047

Query: 386  VLVGLAIAVAN-------------LDEVVRIIRFSPNPETARRELMQRSWNA-------- 424
                  +A                ++++V++       +  +    ++   A        
Sbjct: 1048 NQARFILAKIKGEILIENKRKLVIVEQLVKMGFDPDPVKKWKEAQKRKELEATGEVIPDE 1107

Query: 425  -SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              + +   +  +++S   G D    LS+     ++ + + +L+   +D +  E  +   E
Sbjct: 1108 DEENESENEENEEASTPQGKDLERKLSD--YDYLVGMAIMKLSTEEKDKLLRESEAKMEE 1165

Query: 484  IKECLDIL 491
            +K   ++ 
Sbjct: 1166 LKALEEMS 1173


>gi|321457974|gb|EFX69050.1| hypothetical protein DAPPUDRAFT_329527 [Daphnia pulex]
          Length = 1572

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 100/501 (19%), Positives = 181/501 (36%), Gaps = 57/501 (11%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP L DG KP  R++LF  ++     +KK +K A+++G V     YH HG A++   
Sbjct: 727  ERSIPSLMDGFKPGQRKVLFTCIK---RNDKKEIKVAQLAGSVAEHSAYH-HGEASLMGT 782

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLG----K 148
            +  +AQD+  S  + L+   G FG+    G   A+ RY    + K    +         K
Sbjct: 783  IIGLAQDFVGSNNINLLLPNGQFGTRLQGGKDAASPRYIFTLMSKLTRIIFHPHDDPLLK 842

Query: 149  DTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
              +D     D    EP       P +LVNG  GI  G  T I  +N  EVV     ++D 
Sbjct: 843  HQMD-----DNQRIEPEYYAPIIPMILVNGTDGIGTGWMTKILNYNPREVVANVKRMLDG 897

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG-RGSIVIRGVSHIEKTSGDREQIV 267
             +            P  P      G     + +     G + +   + +E          
Sbjct: 898  EE----------PIPMDPWFKGYRGTIERIDRHRYAISGELAVLSGTEME---------- 937

Query: 268  VTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
            +TE+P +V      E + E +    EK    I D ++       R ++ +          
Sbjct: 938  ITELPLRVWTQNYKESVMETLLHGSEKIPPLITDYKEYHTDTTVRFIVTMSEEKMQQAEA 997

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKAR 381
              L++   LQ+  S+  + L               ILK F   R     +R  YL    +
Sbjct: 998  EGLHKAFKLQTTHSLTSMVLYDSNGCLKMYDTVEDILKEFFTVRLGYYGKRKDYLSGVLQ 1057

Query: 382  DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTI 441
              +  L   A  +    + V I+      +    EL +R+++   ++       ++    
Sbjct: 1058 AESQRLSNQARFICEKCDNVLIVENKK-AKVLVEELRRRNYDPDPVRIWKKNQKNNVNAE 1116

Query: 442  GSDGTMYLSEV--------QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
              +     +E             +L++ +  LT   ++++  + +    E    + +  S
Sbjct: 1117 NEEEEEANAENEEGAVKIGDYDYLLDMPMRSLTYEKKEELLKKRDVKMKE--YDILLKKS 1174

Query: 494  RSRLLGIIKQELLSVKDELDT 514
             + L        + V  E++ 
Sbjct: 1175 PADLWREDLDHFMVVLKEVED 1195


>gi|269860440|ref|XP_002649941.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
 gi|220066628|gb|EED44103.1| DNA topoisomerase II [Enterocytozoon bieneusi H348]
          Length = 1159

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 95/518 (18%), Positives = 181/518 (34%), Gaps = 66/518 (12%)

Query: 29   YLTYAINVILGR-----------------AIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
            +L  +++ I  R                 +IP + DGLKP  R+++F   +  +   K  
Sbjct: 637  FLDQSMSNITVRDFVNKELILFSMADNIRSIPSVIDGLKPGQRKVIFSCFKRNL---KTE 693

Query: 72   VKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPP 125
            +K A++ G V     YH HG A++   +  +A D+  S  + L+   G FGS    G   
Sbjct: 694  IKVAQLVGYVSEHSAYH-HGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGGKDS 752

Query: 126  AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVG 185
            A+ RY    L   +  +  +     ++ +   D    EP       P VLVNG  GI  G
Sbjct: 753  ASPRYIFTNLNPLSRLIFHEHDIPILESQIE-DNLVIEPTYYVPIIPMVLVNGTDGIGTG 811

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +TNIP HN  +++     +++N + +   ++                  G       G+
Sbjct: 812  WSTNIPNHNPLDLIKNIKRLLNNQEPE--EMIPYY-----------RNYKGTITKINAGK 858

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
               +  G       + ++++I V E+P  V   A  E + + + +  I    D    S  
Sbjct: 859  --YISCGKVFE---NINKKEINVVELPIGVWTQAYKEYLDQAIADNVIKSFKDY---STD 910

Query: 306  QGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFR 365
            +   ++I +     +        + T+  S  ++     NG   +    + ILK F   R
Sbjct: 911  KTIDILIHMNNNEFSS-------KLTTSISTNNMVCFDRNGKIKKYHNTLEILKDFYEVR 963

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANL---------DEVVRIIRFSPNPETARRE 416
             E   +R  Y L    D  + L      +  +           +  II      E  R +
Sbjct: 964  LEFYNKRKIYRLKLLADELNKLKNKVRFIEGVITGSIIITQRPLNEIILELERKEFTRYD 1023

Query: 417  LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
              +   +        + I+       +      +E++ ++I  L    L    ++ I+  
Sbjct: 1024 NYEYLLDMKISSLTKEKINKLREEYNNKNI-EYNELKNKSIKNLWFEDLDKFEKEYIKVM 1082

Query: 477  LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
                    K+       +S         +  +  +   
Sbjct: 1083 EAENIKYNKDNQKRYKHKSNEFIEKNILMTKMLKKNPN 1120


>gi|209879055|ref|XP_002140968.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
 gi|209556574|gb|EEA06619.1| DNA gyrase/topoisomerase IV, A subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1645

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 116/601 (19%), Positives = 213/601 (35%), Gaps = 108/601 (17%)

Query: 21   ITDEMQNSYLTYAINVI---------------------LGRAIPDLRDGLKPVHRRILFG 59
            I    + +Y+ Y+++ I                       R+IP++ DGLKP  R++L+ 
Sbjct: 786  IESYQEGTYIDYSMDNICRSLRYRDFIDKELVLFSRYDTARSIPNVIDGLKPGQRKVLYS 845

Query: 60   MMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQG 115
            + +  +      +K A+++G V     YH HG A++   +  MAQD+  S  L L++  G
Sbjct: 846  VFKKKLNNE---MKVAQLAGYVAEHSAYH-HGEASLQSTIVNMAQDFVGSNNLNLLQPCG 901

Query: 116  NFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPN 173
             FGS    G   +A RY   +L     ++  +     + +  + DG   EP+      P 
Sbjct: 902  QFGSRKEGGKDASAARYIFTKLSTWTRYIFPEADDPLLIYLQD-DGQQIEPLFYVPIIPM 960

Query: 174  VLVNGGGGIAVGMATNIPTHNLGEVVDGCV-AVIDNPDIDLDALMEIIRGPDFPTGAVIL 232
            VLVNG  GI  G + ++P +N  ++++    A+  +  + +       +G   P      
Sbjct: 961  VLVNGADGIGTGWSCSVPNYNPKDIINNLKRALRGDIMMPMTPWYRSFKGKVTPIKQKNR 1020

Query: 233  -------------GRTGIKNAYATGRGSIVIRGVSHIEK--------------------- 258
                             I  ++  G  S  I G S  E                      
Sbjct: 1021 KNLSKRKNLTVKLQDNNIDISHNNGTVSHTITGCSQSELDEDHVILTIDPDDNLELGANY 1080

Query: 259  ------TSGDREQIVVTEIPYQVNKAAMLEKIAELV---------REKRIVDIADLRDES 303
                     D E +++TE+P +       E +   +          +     I D RD S
Sbjct: 1081 ETFGNWYRKDDETLIITELPVRRWTQDYKEWLESTLLPPLNTPEGDDIDHSWIMDYRDNS 1140

Query: 304  DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL---NGYKPERFTLIGILKA 360
                  + I +K           + +   L+S  S + + L   N +     T + ILK 
Sbjct: 1141 SHDSVHITIRIKPDKFIQAENEGIEKVFKLKSTLSTSNMTLFDNNSHIVRYETELDILKE 1200

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
            F+  R ++  +R +YLL+K      +L    + +  + E           +  +     R
Sbjct: 1201 FIPTRLQMYEKRKRYLLSKLNYERVILEQKILFLNLVIE-----------DRMKISNKSR 1249

Query: 421  SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            S    ++K            +             + ++ +       L  D    ++  +
Sbjct: 1250 SILVQELKKNNLKSLKDIQLLTEWNNF-------KNVVTVDQLESNNLDVDCNNEQIPCV 1302

Query: 481  GIEIKECLDILSSR-----SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
              EIKE   +LS       +  + ++K EL     E +  ++T I +      DE   V 
Sbjct: 1303 DDEIKEFDYLLSLPLWSLTTERMELLKDELNKKIAEYNNLKKTSIEDLWNKELDELLSVI 1362

Query: 536  E 536
            E
Sbjct: 1363 E 1363


>gi|71650226|ref|XP_813815.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70878735|gb|EAN91964.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1230

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 161/458 (35%), Gaps = 40/458 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+  M + G E      K A++SG +  +  +H HG  ++ + 
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ+++    + L+  +G FGS    G+  AA RY   +L   A  L     +  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I N +  
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMI-NGEAA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G V  G  G     A G     + G  H            VTEIP
Sbjct: 852  KVVVRRLVPWAVGYQGEVRRGPEG--EFIAAGSYQYYVDGRVH------------VTEIP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            + ++  A  + I+ L  +  +  IAD    +      V I+L+    A     +     S
Sbjct: 898  WTLSIEAFRDHISVLASKDVVQRIADYSGAN-----HVDIDLELTNGAMTTYAECESELS 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV---VRRTKYLLNKARDRAHVLVG 389
            L     +N    +           +        +  +    +R +  L            
Sbjct: 953  LTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKS 1012

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL--IDDSSYTIGSDGTM 447
                V +  E    I  + +   A+           D  D +    I   + T   +   
Sbjct: 1013 TLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNR 1072

Query: 448  YLS--EVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             +S  E +   + +    ++     D            
Sbjct: 1073 KISETEKRIDKLKKTTPVQMWLDELDRFDRAFEEHEKT 1110


>gi|267151|sp|P30190|TOP2_TRYCR RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162307|gb|AAA85575.1| DNA topoisomerase II [Trypanosoma cruzi]
 gi|737876|prf||1923363A DNA topoisomerase II
          Length = 1232

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 161/458 (35%), Gaps = 40/458 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+  M + G E      K A++SG +  +  +H HG  ++ + 
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ+++    + L+  +G FGS    G+  AA RY   +L   A  L     +  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I N +  
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMI-NGEAA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G V  G  G     A G     + G  H            VTEIP
Sbjct: 852  KVVVRRLVPWAVGYQGEVRRGPEG--EFIAAGSYQYYVDGRVH------------VTEIP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            + ++  A  + I+ L  +  +  IAD    +      V I+L+    A     +     S
Sbjct: 898  WTLSIEAFRDHISVLASKDVVQRIADYSGAN-----HVDIDLELTNGAMTTYAECESELS 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV---VRRTKYLLNKARDRAHVLVG 389
            L     +N    +           +        +  +    +R +  L            
Sbjct: 953  LTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKS 1012

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL--IDDSSYTIGSDGTM 447
                V +  E    I  + +   A+           D  D +    I   + T   +   
Sbjct: 1013 TLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNR 1072

Query: 448  YLS--EVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
             +S  E +   + +    ++     D            
Sbjct: 1073 KISETEKRIDKLKKTAPVQMWLDELDRFDRAFEEHENT 1110


>gi|71666676|ref|XP_820295.1| mitochondrial DNA topoisomerase II [Trypanosoma cruzi strain CL
            Brener]
 gi|70885633|gb|EAN98444.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 93/458 (20%), Positives = 161/458 (35%), Gaps = 40/458 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+  M + G E      K A++SG +  +  +H HG  ++ + 
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQMSGYISEVSAFH-HGEMSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ+++    + L+  +G FGS    G+  AA RY   +L   A  L     +  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I N +  
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMI-NGEAA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G V  G  G     A G     + G  H            VTEIP
Sbjct: 852  KVVVRRLVPWAVGYQGEVRRGPEG--EFIAAGSYQYYVDGRVH------------VTEIP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            + ++  A  + I+ L  +  +  IAD    +      V I+L+    A     +     S
Sbjct: 898  WTLSIEAFRDHISVLASKDVVQRIADYSGAN-----HVDIDLELTNGAMTTYAECESELS 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV---VRRTKYLLNKARDRAHVLVG 389
            L     +N    +           +        +  +    +R +  L            
Sbjct: 953  LTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKS 1012

Query: 390  LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM-- 447
                V +  E    I  + +   A+           D  D +     + YT  S   +  
Sbjct: 1013 TLKFVTHFREGKIDIVNATDDSLAKTCSKLGMVRVDDSYDYVLRKPITFYTKTSLENLNR 1072

Query: 448  --YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                +E +   + +    ++     D            
Sbjct: 1073 KIGETEKRIDKLKKTTPVQMWLDELDRFDRAFEEHEKT 1110


>gi|324500590|gb|ADY40273.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 1560

 Score =  164 bits (414), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 94/488 (19%), Positives = 184/488 (37%), Gaps = 59/488 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R++LF   +     +KK VK A+++G V  M  YH HG A++   
Sbjct: 710  ERSIPSLVDGLKPGQRKVLFTCFK---RADKKEVKVAQLAGAVGEMSAYH-HGEASLMAT 765

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  S  + L+   G FG+    G   A+ RY   +L      L   + +  + 
Sbjct: 766  IINLAQDYVGSNNINLLLPIGQFGTRLQGGKDSASPRYIFTQLNPVTKALFPSVDESVLR 825

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            F   Y+ + + EP   C   P VLVNG  GI    +T +P +N  E+V+    +I     
Sbjct: 826  FL--YEENQRIEPEWYCPIIPTVLVNGAEGIGTAWSTKVPNYNPREIVENIRLMIRGEQP 883

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P F      + +        +G  +I+  G   I +             
Sbjct: 884  RHMV-------PWFKNFRGTIEQMDENRFVCSGEIAIIGEGTIEITELPIRTWT------ 930

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
              Q  K ++LE + +   +K+   I D ++       + ++++         +  L++  
Sbjct: 931  --QTYKESVLEPMLDG-SDKQPAMITDFKEYHTDTTVKFLVKMTPEKLRAAQMEGLHKVF 987

Query: 332  SLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRT---KYLLNKARDRAH 385
             LQ++ +   + L               I   F   R++  + R      +L     R  
Sbjct: 988  KLQTVINTTSMVLFDAMGCLRRFNTVEEICTDFFETRKKKYIERKAFQMGMLRAQSQRLS 1047

Query: 386  VLVGLAIAVAN-------------LDEVVRIIRFSPNPETARRELMQRSWNA-------- 424
                  +A                ++++V++       +  +    ++   A        
Sbjct: 1048 NQARFILAKIKGEILIENKRKLVIVEQLVKMGFDPDPVKKWKEAQKRKELEATGEVIPDE 1107

Query: 425  -SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
              + +   +  +++S   G D    LS+     ++ + + +L+   +D +  E  +   E
Sbjct: 1108 DEENESENEENEEASTPQGKDLERKLSD--YDYLVGMAIMKLSTEEKDKLLRESEAKMEE 1165

Query: 484  IKECLDIL 491
            +K   ++ 
Sbjct: 1166 LKALEEMS 1173


>gi|322816271|gb|EFZ24640.1| mitochondrial DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1231

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 145/385 (37%), Gaps = 36/385 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            RA+    DGLKP  R+IL+  M + G E      K A++SG +  +  +H HG  ++ + 
Sbjct: 679  RALAHAVDGLKPSQRKILWAIMRRSGNESA----KVAQLSGYISEVSAFH-HGEMSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ+++    + L+  +G FGS    G+  AA RY   +L   A  L     +  +D
Sbjct: 734  IIKMAQNFTGGNNINLLIPEGQFGSRQQLGNDHAAARYIFTKLSSLARILFPSEDEPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G A+NIP  +  +V     ++I N +  
Sbjct: 794  YV-TEEGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRSMI-NGEAA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G V  G  G     A G     + G  H            VTEIP
Sbjct: 852  KVVVRRLVPWAVGYQGEVRRGPEG--EFIAAGSYQYYVDGRVH------------VTEIP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            + ++  A  + I+ L  +  +  IAD    +      V I+L+    A     +     S
Sbjct: 898  WTLSIEAFRDHISVLASKDVVQRIADYSGAN-----HVDIDLELTNGAMTTYAECESELS 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV---VRRTKYLLNKARDRAHVLVG 389
            L     +N    +           +        +  +    +R +  L            
Sbjct: 953  LTQRIYINGTVFSPTGVLTPLEGDLAPVLQWHYDRRLDLYKKRRQRNLGLLEAELAREKS 1012

Query: 390  LAIAVANLDEVVRIIRFSPNPETAR 414
                V +  E    I  + +   A+
Sbjct: 1013 TLKFVTHFREGKIDIVNATDDSLAK 1037


>gi|237511973|gb|ACQ99699.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 49/72 (68%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 1   SARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 134 RLQKAAHFLLDD 145
           RL   A  +L +
Sbjct: 61  RLTPLAMEMLRE 72


>gi|9081887|gb|AAF82626.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 80

 Score =  164 bits (414), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILYAMYSSGNTFDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|322824253|gb|EFZ29714.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1461

 Score =  163 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 131/371 (35%), Gaps = 34/371 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K  +++G V     YH HG  ++   
Sbjct: 682  ERSIPSVIDGLKPGQRKIIFSSFKRRLT---RSIKVVQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   AA RY   RL   A ++     +  VD
Sbjct: 738  IVGLAQNFVGSNNVPLLQQDGQFGTRLQGGKDHAAGRYIFTRLTNIARYIYHPSDEFVVD 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP       P VLVNG  GI  G ATNIP ++  EV+D  + ++   ++ 
Sbjct: 798  YKDD-DGLSVEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQ 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                G TG       G+           +       QI  TE+P
Sbjct: 857  PMKPWYF-------------GFTGTIEEKERGKFVSTGCANVRPD----GVVQI--TELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY-RYT 331
                     + + EL  +     +   R+ +        + L        +         
Sbjct: 898  IGTWTQGYKKFLEELREK---EVVVQYREHNTDVTVDFEVFLHPEVLHHWVAQGCVEERL 954

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L+       +     + +             F    +    K       D   V   L 
Sbjct: 955  QLREYIHATNIIAFDREGQITKYRDAEAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLE 1014

Query: 392  IAVANLDEVVR 402
              V  + EVV 
Sbjct: 1015 NMVRFVTEVVD 1025


>gi|157871926|ref|XP_001684512.1| DNA topoisomerase ii [Leishmania major]
 gi|68127581|emb|CAJ05684.1| DNA topoisomerase ii [Leishmania major strain Friedlin]
          Length = 1497

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 155/412 (37%), Gaps = 45/412 (10%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGM 60
            +  ++ +E  +  +  VS  D +    + ++   I    R+IP + DG KP  R+ILF  
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFS---IADCERSIPSVIDGFKPGQRKILFSC 699

Query: 61   MQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +  +  +   +K  +++G V     YH HG  ++   +  MAQD+  S  + L+   G 
Sbjct: 700  FKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQ 755

Query: 117  FGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FG+    G   AA RY   RL + A  +        V+++ + DG   EP       P V
Sbjct: 756  FGTRLHGGKDHAAGRYIFTRLMQVARAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMV 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            LVNG  GI  G +T+IP +N  E++     ++   ++                     G 
Sbjct: 815  LVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYF-------------GF 861

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            TG       G+   +  G   I         + +TE+P  V   A  + + ++  +    
Sbjct: 862  TGTMEEKEPGK--FISHGRYEIRPDGV----VCITELPIGVWTQAYKKFLEDMREK---E 912

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK----PE 350
             +   R+ +        + L        +   +         +      +   K     +
Sbjct: 913  LVVQYREHTTDVTVDFEVFLHPQVLEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITK 972

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
                  +LK F   R +   +R +YLL + R    +   L   V  + EVV 
Sbjct: 973  YSDAESVLKEFYLVRLDYYAKRKQYLLGELRR---LTSKLENMVRFVREVVE 1021


>gi|322489879|emb|CBZ25140.1| mitochondrial DNA topoisomerase II [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1236

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/480 (18%), Positives = 168/480 (35%), Gaps = 56/480 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            RAIP   DGLKP  R+IL+ M++     + +  K A++SG +     +H HG A++ + +
Sbjct: 683  RAIPHCVDGLKPSQRKILWAMLR---RHSSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G   AA RY   +L + A  L  +     +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGSDHAAPRYIFTKLSRFARLLFPEEDDPLLDY 798

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
                +G+F EP       P +L NG  GI  G AT IP  +  +V     A+I N +   
Sbjct: 799  MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPAFHPLDVSAAVRAMI-NGESAK 856

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
              +  ++       G V  G               +  G            +  ++EIP+
Sbjct: 857  QVMRNLVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
              +  A    I+ L     +  IAD    +      + I+L     +     +     +L
Sbjct: 903  MTSIEAFRLHISSLASADVVQRIADYSGAN-----HIDIDLIVREGSLTTWAECETDLAL 957

Query: 334  QSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
                 +N    +           +             RR      +   +  ++      
Sbjct: 958  AQRIYINGTVFSPTGTLSPIDSDLSPVLQWHY----DRRLDLYKRRRTRKIGLMEMDLAR 1013

Query: 394  VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
            + +  + V   R                       D ++  DD+ +       +   +  
Sbjct: 1014 LQSTRKFVEHFRQGQ-------------------IDFLNATDDTLHKTCVKLGLVRVDES 1054

Query: 454  TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
               IL+  +   T    + ++ ++     +I+E     ++  ++      +      E +
Sbjct: 1055 FDYILKKPITFFTRTSTEKLQADIAKTQAQIEELKR--TTPVKMWLTELDKFDKTFQEYE 1112


>gi|237511971|gb|ACQ99698.1| mutant DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 72

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 50/72 (69%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            AR   E MG YHPHG+A+IY+ L RMAQ WSLR  L++GQGNFGS   DPPAA RYTE 
Sbjct: 1   SARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 60

Query: 134 RLQKAAHFLLDD 145
           RL   A  +L +
Sbjct: 61  RLTPLAMEMLRE 72


>gi|195031277|ref|XP_001988321.1| GH10628 [Drosophila grimshawi]
 gi|193904321|gb|EDW03188.1| GH10628 [Drosophila grimshawi]
          Length = 1486

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 104/555 (18%), Positives = 197/555 (35%), Gaps = 40/555 (7%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
             R+IP L DGLKP  R+++F   +     +K+ VK A++SG V  M  YH HG  ++   
Sbjct: 709  ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLSGSVAEMSAYH-HGEVSLQMT 764

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L+E +G FG+    G   A+ RY    +      +   L    + 
Sbjct: 765  IVNLAQNYVGSNNINLLEPRGQFGTRLTGGKDCASARYIFTLMSPLTRLIYHPLDDPLLQ 824

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++   DG   EP+      P VLVNG  GI  G +T I  +N  E+++    +I+     
Sbjct: 825  YQ-TDDGQRIEPLWYIPIIPMVLVNGAEGIGTGWSTKIANYNPRELINNLRRMING---- 879

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
             +  + +       TG +     G    Y       ++              +I +TE+P
Sbjct: 880  -EEPLLMHPWYKNFTGNMDYVNDG---RYVHSGNIQML-----------SDNRIEITELP 924

Query: 273  YQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ--L 327
              V      E + E +     K    +++ R+       R V+    G    +       
Sbjct: 925  IGVWTQTYKENVLEALSNGTEKVKAIVSEYREFHTDTTVRFVVSFNPGEFERLRSENGGF 984

Query: 328  YRYTSLQSLFSVN-MVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            +R   L S  S N M A +         +   IL  F   R E   RR  YL+ +   +A
Sbjct: 985  HRVFKLSSSISTNQMHAFDDSNCLRRFSSPKDILLEFYKLRLEYYNRRKDYLVGQLTAQA 1044

Query: 385  HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              L   A  +    E  +++  +   +    EL++R +    +K+    I          
Sbjct: 1045 DRLSDQARFILEKCEK-KLVVENKQRKVMIDELIKRGYRPDPVKEWQRRIKIEEAETADA 1103

Query: 445  GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
                  E         ++ +     +   +         +      + +  R   ++KQ 
Sbjct: 1104 EEEEDEETGASG-SGKKVKKELDPEKAFQKLTEVKKFDYLLGMSMWMLTEERKNELLKQR 1162

Query: 505  LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
               + +  +  ++T     + D+++ +  + E           +        ++Q+  G 
Sbjct: 1163 DTKLIELDNLMKKTPNHLWMDDLDNLEQKLDEVEEKERLEEQGINLKQAKAIKSQKAAGG 1222

Query: 565  GRSGVVMRDEDFVTD 579
                      +    
Sbjct: 1223 RGKKGKAASGNEDIF 1237


>gi|71744648|ref|XP_803868.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70831119|gb|EAN76624.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 165/479 (34%), Gaps = 42/479 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
            RA+    DGLKP  R+I++  M + G E      K A++SG +     +H HG  ++ + 
Sbjct: 679  RALAHSVDGLKPSQRKIIWALMRRSGNEAA----KVAQLSGYISEASAFH-HGETSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ ++    + L+  +G FGS    G+  AA RY   +L K A  L        +D
Sbjct: 734  MIKMAQSFTGGNNVNLLVPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G A+NIP  +  +V     A+I   +  
Sbjct: 794  YIVE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISG-EAA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G +  G  G     A G  +    G  H            VTE+P
Sbjct: 852  KSVVRRLVPWAVGFQGEIRRGPEG--EFIAVGTYTYCKGGRVH------------VTELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +  +  A  E I+ L  +  +  IAD    +      V I+++    A     +      
Sbjct: 898  WTCSVEAFREHISYLATKDIVNRIADYSGAN-----HVDIDVEVAQGAVNTYAECESELG 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
            L     +N    +           +             RR      + +    +L     
Sbjct: 953  LTQRIHINGTVFSPNGTLSPLESDLTPVLQWHY----DRRLDLYKKRRQRNLMLLEQELA 1008

Query: 393  AVANLDEVVRIIRFSP-NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
               +  + V+  R    +   A    +++  +    K  +  +DDS   I      + ++
Sbjct: 1009 REKSTLKFVQHFRAGHIDFANATEATLEKVCS----KLGLVRVDDSFDYILRKPITFYTK 1064

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
                 +L+        +        +     E+ +         + +     +    + 
Sbjct: 1065 TSFENLLKKIAETERRIEALKKTTPVQLWLGELDQFDRFFQDHEKKMVEAILKERRQRS 1123


>gi|9081881|gb|AAF82623.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 80

 Score =  163 bits (413), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMHSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|9081883|gb|AAF82624.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 80

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 60/80 (75%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMYSSGNTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|170591240|ref|XP_001900378.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
 gi|158591990|gb|EDP30592.1| DNA gyrase/topoisomerase IV, A subunit family protein [Brugia malayi]
          Length = 1178

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/463 (19%), Positives = 169/463 (36%), Gaps = 53/463 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
            R++P++ DGLKP  R++LF M      + +  ++ ++++G V     YH HG  ++ + +
Sbjct: 736  RSLPNVVDGLKPSQRKVLFTMFG---RYERGEIRVSQLAGAVSQYCGYH-HGEESLVNTI 791

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLG----KD 149
             R+AQD+  S  L L+   G FG+    G+  A+ RY    L   A  +         K+
Sbjct: 792  VRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVASARYIYTSLSPLARAIFPHPDDKVLKN 851

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVV-DGCVAVIDN 208
             V+     + +  EP   C   P +L+NG  GI  G AT I      +V+ +    +   
Sbjct: 852  LVE-----ENALVEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQVISNAQRLIDGR 906

Query: 209  PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            P  D+       +G                  Y T      I G     +       I+ 
Sbjct: 907  PLQDMLPHFRKFQG----------------TIYETAPRQYSISGKVSYRRLKSGLRAII- 949

Query: 269  TEIPYQVNKAAMLEKI-AELVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVILN 325
            TE+P  +      EK+    ++   I +  +L  ES+      VI   L         LN
Sbjct: 950  TELPTGIWNNKYKEKVLDSAIKNGIISNYEELHTESNVHFILHVIDKPLLSDKKQIKALN 1009

Query: 326  QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            +L +  S+ S  S+ +        +  +   I + F   R +  + R +  L     +  
Sbjct: 1010 RLLKLRSVASENSMILFDEKNVLQKYDSTREIFQEFFEVRRQKYIERRECELVIMEGKLK 1069

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             +      V  +     II    N      +L ++ ++++    +             D 
Sbjct: 1070 FIENQVRFVNAIING-EIIIKKKNRAEIIAQLAEKGFDSN---PMKAKNATDGNCNPPDF 1125

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                       +L++ L RL+      ++ + + L    K   
Sbjct: 1126 AY---------LLDMPLCRLSNEEILVLQEKRSQLWERFKSLK 1159


>gi|164612286|gb|ABY63612.1| topoisomerase IV [Streptococcus suis]
          Length = 84

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 60/84 (71%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K A+  G +MG YHPHG+ +IY+A+ R++QDW LR +LIE  GN GS+DGDPPAA RYT
Sbjct: 1   RKSAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYT 60

Query: 132 ECRLQKAAHFLLDDLGKDTVDFRP 155
           E RL + +  LL D+ K TVDF  
Sbjct: 61  EARLSQLSGELLKDIDKSTVDFVW 84


>gi|154340639|ref|XP_001566276.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063595|emb|CAM39778.1| DNA topoisomerase ii [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1501

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 137/374 (36%), Gaps = 40/374 (10%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP   DG KP  R+ILF   +  +  +   +K  +++G V     YH HG  ++   
Sbjct: 678  ERSIPSAIDGFKPGQRKILFSCFKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQT 733

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQD+  S  + L+   G FG+    G   AA RY   RL   A  +        V+
Sbjct: 734  IVGMAQDFVGSNNVPLLRKDGQFGTRLHGGKDHAAGRYIFTRLMHVARAIFHPADDFVVE 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP       P VLVNG  GI  G +T+IP +N  EV+     ++   ++ 
Sbjct: 794  YKDD-DGLSVEPFYYIPVIPMVLVNGTTGIGTGFSTSIPNYNPLEVIRNLERLMRGEEVH 852

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                G TG       G+   +  G   +         + +TE+P
Sbjct: 853  KMQPWYF-------------GFTGTMEEKEPGK--FISHGRYEVRPDGV----VCITELP 893

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
              V      + + ++  +     +   R+ +        + L        +   +     
Sbjct: 894  IGVWTQTYKKFLEDMREK---ELVVQYREHTTDVTVDFEVFLHPQVLEQWVAQDVVEERL 950

Query: 333  LQSLFSVNMVALNGYK----PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
                +      +   K     + +    +LK F   R +   +R  YLL + R    +  
Sbjct: 951  QLKEYVHATNIIAFNKEGQITKYWDAESVLKDFYLVRLDYYAKRKDYLLGELRR---LTS 1007

Query: 389  GLAIAVANLDEVVR 402
             L   V  + EVV 
Sbjct: 1008 KLENMVRFVREVVE 1021


>gi|49425335|gb|AAT66028.1| gyrase subunit A [Corynebacterium amycolatum]
 gi|49425339|gb|AAT66030.1| gyrase subunit A [Corynebacterium glutamicum]
          Length = 70

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 136 QKAAHFLLDD 145
            K    LL D
Sbjct: 61  TKITLELLRD 70


>gi|322500572|emb|CBZ35649.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1498

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 155/412 (37%), Gaps = 45/412 (10%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGM 60
            +  ++ +E  +  +  VS  D +    + ++   I    R+IP + DG KP  R+ILF  
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFS---IADCERSIPSVIDGFKPGQRKILFSC 699

Query: 61   MQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +  +  +   +K  +++G V     YH HG  ++   +  MAQD+  S  + L+   G 
Sbjct: 700  FKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQ 755

Query: 117  FGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FG+    G   AA RY   RL + +  +        V+++ + DG   EP       P V
Sbjct: 756  FGTRLHGGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMV 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            LVNG  GI  G +T+IP +N  E++     ++   ++                     G 
Sbjct: 815  LVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYF-------------GF 861

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            TG       G+   V  G   I         + +TE+P  V   A  + + ++  +    
Sbjct: 862  TGTMEEKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQAYKKFLEDMREK---E 912

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK----PE 350
             +   R+ +        + L        +   +         +      +   K     +
Sbjct: 913  LVVQYREHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITK 972

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
                  +LK F   R +   +R +YLL + R    +   L   V  + EVV 
Sbjct: 973  YSDAESVLKEFYLVRLDYYAKRKQYLLGELRR---LTSKLENMVRFVREVVE 1021


>gi|118398165|ref|XP_001031412.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila]
 gi|89285740|gb|EAR83749.1| DNA gyrase/topoisomerase IV, A subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1416

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 37/380 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +   K  +K A++ G V     YH HG  ++   +
Sbjct: 681  RSIPSLCDGLKPGQRKILFSCFKRNL---KSEIKVAQLIGYVAEHSAYH-HGEQSLASTI 736

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+    G   A+ RY    L K    L  +     + +
Sbjct: 737  IGMAQNFVGSNNINLMMPIGQFGTRNQGGKEHASARYIFTSLSKITRILFPEHDDHVLKY 796

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + D    EP   +    P  LVNG  GI  G +T+IP +N  E+V+     ++     
Sbjct: 797  LED-DNQVVEPEWYMPI-IPMCLVNGSSGIGTGWSTDIPNYNHKEIVEQIRGKLEGKPFT 854

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               L    +G          G+  I       +G  +++G   I++     E I +TE+P
Sbjct: 855  --ELHPWYKG--------FQGQIEINP-----KGGYIVKGQYEIDEVE---ETIKITELP 896

Query: 273  YQVNKAAMLEKIAELVREKR-IVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
                       + EL+   +   +I D+R+          ++   G         + +  
Sbjct: 897  VGKWTRDYKNYLEELLSPPKGEPEIEDIREYHTNNRVHFEVQAIPGRIQQW--GDIEKKL 954

Query: 332  SLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             L +      + +   K +         I++ F A R +   +R  YL++K +    +L 
Sbjct: 955  KLSTTMQTTNIVMFNDKYKLKRYQSTVEIMEEFYALRLKCYQKRKDYLVSKIQRDVDILQ 1014

Query: 389  GLAIAVANLDEVVRIIRFSP 408
                 +  +      IR + 
Sbjct: 1015 NKMKFITLVVNGTLEIRNAR 1034


>gi|71417991|ref|XP_810722.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70875297|gb|EAN88871.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1484

 Score =  163 bits (412), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 129/371 (34%), Gaps = 34/371 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K  +++G V     YH HG  ++   
Sbjct: 682  ERSIPSVIDGLKPGQRKIIFSSFKRRLT---RSIKVVQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   AA RY   RL   A ++        VD
Sbjct: 738  IVGLAQNFVGSNNVPLLQQDGQFGTRLQGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVD 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP       P VLVNG  GI  G ATNIP ++  EV+D  + ++   ++ 
Sbjct: 798  YKDD-DGLSVEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQ 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                G  G       G+           +       QI  TE+P
Sbjct: 857  PMKPWYF-------------GFAGTIEEKEKGKFVSTGCANVRPD----GVVQI--TELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY-RYT 331
                     + + EL  +     +   R+ +        + L        +         
Sbjct: 898  IGTWTQGYKKFLEELREK---EVVVQYREHNTDVTVDFEVFLHPEVLHHWVAQGCVEERL 954

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L+       +     + +             F    +    K       D   V   L 
Sbjct: 955  QLREYIHATNIIAFDREGQITKYRDAEAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLE 1014

Query: 392  IAVANLDEVVR 402
              V  + EVV 
Sbjct: 1015 NMVRFVTEVVD 1025


>gi|5456786|gb|AAD43658.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|261331231|emb|CBH14221.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1221

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/479 (18%), Positives = 165/479 (34%), Gaps = 42/479 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
            RA+    DGLKP  R+I++  M + G E      K A++SG +     +H HG  ++ + 
Sbjct: 679  RALAHSVDGLKPSQRKIIWALMRRSGNEAA----KVAQLSGYISEASAFH-HGETSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ ++    + L+  +G FGS    G+  AA RY   +L K A  L        +D
Sbjct: 734  MIKMAQSFTGGNNVNLLVPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G A+NIP  +  +V     A+I   +  
Sbjct: 794  YIVE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFASNIPPFHPLDVSAAVRAMISG-EAA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G +  G  G     A G  +    G  H            VTE+P
Sbjct: 852  KSVVRRLVPWAVGFQGEIRRGPEG--EFIAVGTYTYCKGGRVH------------VTELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +  +  A  E I+ L  +  +  IAD    +      V I+++    A     +      
Sbjct: 898  WTCSVEAFREHISYLATKDIVNRIADYSGAN-----HVDIDVEVAQGAVNTYAECESELG 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
            L     +N    +           +             RR      + +    +L     
Sbjct: 953  LTQRIHINGTVFSPNGTLSPLESDLTPVLQWHY----DRRLDLYKKRRQRNLTLLEQELA 1008

Query: 393  AVANLDEVVRIIRFSP-NPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
               +  + V+  R    +   A    +++  +    K  +  +DDS   I      + ++
Sbjct: 1009 REKSTLKFVQHFRAGHIDFANATEATLEKVCS----KLGLVRVDDSFDYILRKPITFYTK 1064

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
                 +L+        +        +     E+ +         + +     +    + 
Sbjct: 1065 TSFENLLKKIAETERRIEALKKTTPVQLWLGELDQFDRFFQDHEKKMVEAILKERRQRS 1123


>gi|258569355|ref|XP_002543481.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
 gi|237903751|gb|EEP78152.1| DNA topoisomerase 2 [Uncinocarpus reesii 1704]
          Length = 1704

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 102/572 (17%), Positives = 185/572 (32%), Gaps = 73/572 (12%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +  +S TD +    + +++   + R+IP + DGLKP  R++L+ M +  V       
Sbjct: 779  DHSVEKISYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYAMFKRNV------R 831

Query: 73   KCARIS---GEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
            K A++    G V  M  Y  HG  ++   +  +AQ +  S  +  +E  GNFGS    G 
Sbjct: 832  KDAKVVELGGYVSGMTGYQ-HGEVSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGS 890

Query: 124  PPAAERYTECRLQKAAHFLLDDLG----KDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG 179
              A+ RY   RL   A  +         K  VD     DG   EP V     P VL+NG 
Sbjct: 891  DCASARYIHTRLSPFARRIFSTADDPLLKHNVD-----DGKIIEPEVFVPVVPLVLINGA 945

Query: 180  GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN 239
             GI  G +T+IP  N  ++VD    ++D   +            +          +GI  
Sbjct: 946  DGIGTGWSTSIPNFNPEDIVDNLKRLMDGEPVVPMKPWFRGFTGEVTAAGDRYKFSGIIK 1005

Query: 240  AYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDI-AD 298
                                     ++ +TE+P +       +K+ E+++ ++      D
Sbjct: 1006 --------------------QTGDYEVEITELPIRTWTQDFKDKLEEIIKAEKAPSFIKD 1045

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI--- 355
             +D +       +I++        + + L     L    + + +     +          
Sbjct: 1046 YKDYNTHSKVHFIIQMDEKHMKKAVEDGLEERFKLSRTITTSNMVAFDAEGRITKYNTAE 1105

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
             IL+AF A R     +R +++L +       L   A  V  + +   +I   P  +  + 
Sbjct: 1106 DILEAFFAVRIRFYEKRKQFMLAQLHKELEKLTNQARFVQMIIDGKLVIAKKPKAKLMQE 1165

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDG-------------------TMYLSEVQTRA 456
               +         D     +D       +                       L++ +   
Sbjct: 1166 LKEKAFKPFPKGVDAAKEGEDEPTVENDESEEEEKKSGSDGYDYLLGMALWSLTQERVAK 1225

Query: 457  ILELRLARLTGLG----RDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
            +L     +   +               L   I E    L    R     +        +L
Sbjct: 1226 LLRQMGDKELEIDALIKLSKEDLWRRDLDEFIAEWRYQLEDEERRAKKSRSYGRRTSTKL 1285

Query: 513  DTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
             T           D  D D   +      V+ 
Sbjct: 1286 KTAGPAAKKRKATDGGDSDFAPKAKKTAIVNK 1317


>gi|4928203|gb|AAD33462.1|AF129763_1 gyrase subunit A [Streptococcus mitis]
          Length = 74

 Score =  163 bits (411), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 58/74 (78%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           + K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RY
Sbjct: 1   HKKSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 60

Query: 131 TECRLQKAAHFLLD 144
           TE R+ K A  +L 
Sbjct: 61  TEARMSKIALEMLR 74


>gi|1542967|gb|AAB08037.1| DNA gyrase subunit A [Streptococcus pneumoniae]
          Length = 69

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 43/69 (62%), Positives = 58/69 (84%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+GM ++GV  +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +
Sbjct: 1   KPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYM 60

Query: 110 LIEGQGNFG 118
           L++G GNFG
Sbjct: 61  LVDGHGNFG 69


>gi|71424000|ref|XP_812644.1| DNA topoisomerase II [Trypanosoma cruzi strain CL Brener]
 gi|70877452|gb|EAN90793.1| DNA topoisomerase II, putative [Trypanosoma cruzi]
          Length = 1476

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 78/371 (21%), Positives = 129/371 (34%), Gaps = 34/371 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K  +++G V     YH HG  ++   
Sbjct: 682  ERSIPSVIDGLKPGQRKIIFSSFKRRLT---RSIKVVQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   AA RY   RL   A ++        VD
Sbjct: 738  IVGLAQNFVGSNNVPLLQQDGQFGTRLQGGKDHAAGRYIFTRLTNIARYIYHPSDDFVVD 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            ++ + DG   EP       P VLVNG  GI  G ATNIP ++  EV+D  + ++   ++ 
Sbjct: 798  YKDD-DGLSVEPFYYVPVIPMVLVNGTSGIGTGFATNIPNYSPLEVIDNLMRLLRGEEVQ 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                                G  G       G+           +       QI  TE+P
Sbjct: 857  PMKPWYF-------------GFAGTIEEKEKGKFVSTGCANVRPD----GVVQI--TELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY-RYT 331
                     + + EL  +     +   R+ +        + L        +         
Sbjct: 898  IGTWTQGYKKFLEELREK---EVVVQYREHNTDVTVDFEVFLHPEVLHHWVAQGCVEERL 954

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             L+       +     + +             F    +    K       D   V   L 
Sbjct: 955  QLREYIHATNIIAFDREGQITKYRDAEAVLKEFYLVRLEYYAKRRDFLIGDLRSVASKLE 1014

Query: 392  IAVANLDEVVR 402
              V  + EVV 
Sbjct: 1015 NMVRFVTEVVD 1025


>gi|5456780|gb|AAD43652.1| topoisomerase IV subunit A [Staphylococcus simulans]
          Length = 82

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G++HPHG+ ++YDA+ R++QDW LR +LIE  GN G++D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQFHPHGDFSVYDAMVRLSQDWKLRHVLIEMHGNNGNIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFV 82


>gi|5456802|gb|AAD43674.1| topoisomerase IV subunit A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 82

 Score =  162 bits (410), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++YDA+ R++Q W L  +LIE QGN GS+D DP AA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYDAMVRLSQGWKLCHVLIEMQGNNGSIDNDPAAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSRISEELLRDINKETVPFM 82


>gi|18266788|sp|O61078|TOP2_LEICH RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|6453822|gb|AAC05295.2| DNA topoisomerase II [Leishmania chagasi]
          Length = 1236

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/273 (25%), Positives = 116/273 (42%), Gaps = 26/273 (9%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           RAIP   DGLKP  R+IL+ M++     N +  K A++SG +     +H HG A++ + +
Sbjct: 683 RAIPHCVDGLKPSQRKILWAMLR---RHNSEASKVAQLSGYISEASAFH-HGEASLQETI 738

Query: 98  ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            +MAQ+++    + L+  +G FGS    G+  AA RY   +L +    L  +     +D+
Sbjct: 739 VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFGRLLFPEEDDPLLDY 798

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
               +G+F EP       P +L NG  GI  G AT IP+ +  +V     A+I N +   
Sbjct: 799 MDE-EGTFVEPHHYVPILPMLLCNGAVGIGFGFATTIPSFHPLDVSAAVRAMI-NGESAK 856

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
             +  ++       G V  G               +  G            +  ++EIP+
Sbjct: 857 QVVRNLVPWAVGFQGTVRRGPD----------NEFIAVGKYTAHPNG----RFHISEIPW 902

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             +  A    I+ L     +  IAD    +   
Sbjct: 903 MTSIEAFRLHISSLASADVVQRIADYSGANHID 935


>gi|67472224|ref|XP_651972.1| DNA topoisomerase II [Entamoeba histolytica HM-1:IMSS]
 gi|40804954|gb|AAR91745.1| topoisomerase II [Entamoeba histolytica]
 gi|56468768|gb|EAL46584.1| DNA topoisomerase II, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1349

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/415 (20%), Positives = 164/415 (39%), Gaps = 34/415 (8%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
              +   ++ + S+S  D +    + ++      R+IP + DGLKP  R++L+  ++  + 
Sbjct: 642  DPNTYLDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIM 700

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
                 +K +++SG V  K  YH HG  ++   +  MAQ++  S  +  +   G FGS   
Sbjct: 701  KE---LKVSQLSGLVSEKSSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLG 756

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGG 180
             G   AA RY   RL   + +L        +++  + D    EP       P VLVNG  
Sbjct: 757  GGKDQAAARYIYTRLSSISRYLCPKDDDQILEYLIDED-RRIEPKYYFPIIPTVLVNGAD 815

Query: 181  GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNA 240
            GI  G +T +  +N  ++VD C   ++  +                      G TG    
Sbjct: 816  GIGTGWSTAVSNYNPLDLVDNCRRYLNGEEFKEMKPWF-------------RGWTGQLRK 862

Query: 241  YATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLR 300
               G       G           ++I +TE+P Q+   +  + + + +  K +   ++  
Sbjct: 863  NKDG-SGYDCYGKWR----RLSEDKIEITELPIQIWTDSYKQHLEKCIEAKIVKGYSEYH 917

Query: 301  DESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKA 360
              +       VI+L +  S + I   L   +S+++  ++++        +  T++ IL  
Sbjct: 918  MVNT---VHFVIDLVQPMSDEDIWTNLKLVSSVKTT-NMHLFNSEYKITKYHTVLDILSE 973

Query: 361  FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
            F   R +    R K ++     +  +L   A  +  + E   I+      E  + 
Sbjct: 974  FCDVRMKGYEERKKAIIESMERQLMILSNKARFIKMVIEGELIVNNRKKNELYKD 1028


>gi|321398489|emb|CAM69466.2| DNA topoisomerase ii [Leishmania infantum JPCM5]
          Length = 1252

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 155/412 (37%), Gaps = 45/412 (10%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGM 60
            +  ++ +E  +  +  VS  D +    + ++   I    R+IP + DG KP  R+ILF  
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFS---IADCERSIPSVIDGFKPGQRKILFSC 699

Query: 61   MQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +  +  +   +K  +++G V     YH HG  ++   +  MAQD+  S  + L+   G 
Sbjct: 700  FKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQ 755

Query: 117  FGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FG+    G   AA RY   RL + +  +        V+++ + DG   EP       P V
Sbjct: 756  FGTRLHGGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMV 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            LVNG  GI  G +T+IP +N  E++     ++   ++                     G 
Sbjct: 815  LVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYF-------------GF 861

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            TG       G+   V  G   I         + +TE+P  V   A  + + ++  +    
Sbjct: 862  TGTMEEKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQAYKKFLEDMREK---E 912

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK----PE 350
             +   R+ +        + L        +   +         +      +   K     +
Sbjct: 913  LVVQYREHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITK 972

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
                  +LK F   R +   +R +YLL + R    +   L   V  + EVV 
Sbjct: 973  YSDAESVLKEFYLVRLDYYAKRKQYLLGELRR---LTSKLENMVRFVREVVE 1021


>gi|146092354|ref|XP_001470271.1| DNA topoisomerase ii [Leishmania infantum]
          Length = 1253

 Score =  162 bits (409), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/412 (21%), Positives = 155/412 (37%), Gaps = 45/412 (10%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGM 60
            +  ++ +E  +  +  VS  D +    + ++   I    R+IP + DG KP  R+ILF  
Sbjct: 643  KTNVNVNESMDYNVRQVSYRDFVDKELILFS---IADCERSIPSVIDGFKPGQRKILFSC 699

Query: 61   MQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +  +  +   +K  +++G V     YH HG  ++   +  MAQD+  S  + L+   G 
Sbjct: 700  FKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQ 755

Query: 117  FGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNV 174
            FG+    G   AA RY   RL + +  +        V+++ + DG   EP       P V
Sbjct: 756  FGTRLHGGKDHAAGRYIFTRLMQVSRAIFHPADDFVVEYKDD-DGLSVEPFFYIPVIPMV 814

Query: 175  LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
            LVNG  GI  G +T+IP +N  E++     ++   ++                     G 
Sbjct: 815  LVNGTTGIGTGFSTSIPNYNPLEIISNLERLMRGEEVHKMQPWYF-------------GF 861

Query: 235  TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
            TG       G+   V  G   I         + +TE+P  V   A  + + ++  +    
Sbjct: 862  TGTMEEKEPGK--FVSHGRYEIRPDGV----VCITELPIGVWTQAYKKFLEDMREK---E 912

Query: 295  DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK----PE 350
             +   R+ +        + L        +   +         +      +   K     +
Sbjct: 913  LVVQYREHTTDVTVDFEVFLHPQVLEQWVSQDVVEERLQLKEYVHATNIIAFNKEGQITK 972

Query: 351  RFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
                  +LK F   R +   +R +YLL + R    +   L   V  + EVV 
Sbjct: 973  YSDAESVLKEFYLVRLDYYAKRKQYLLGELRR---LTSKLENMVRFVREVVE 1021


>gi|224458672|gb|ACN43199.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 235

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 110/254 (43%), Positives = 159/254 (62%), Gaps = 26/254 (10%)

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           +VTE+PYQVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN 
Sbjct: 1   IVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNN 60

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           LY+ T+LQ+ F +N++AL   +P+   L   L+ ++  ++ V+ RRT Y L KA  RAH+
Sbjct: 61  LYKQTALQTSFGINLLALVDGQPKVLNLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHI 120

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           L GL IA+ +LD V+ +IR S   E AR  L+++                          
Sbjct: 121 LEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQ-------------------------- 154

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L+E Q +AIL++RL RLTGL R+ I  E  +L   I E  DIL++  ++L II++EL 
Sbjct: 155 FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQTLVKLIAELKDILANEYKVLEIIREELT 214

Query: 507 SVKDELDTPRRTRI 520
            +K+  +  RRT I
Sbjct: 215 EIKERFNDERRTEI 228


>gi|9081885|gb|AAF82625.1| topoisomerase IV subunit A [Staphylococcus capitis]
          Length = 80

 Score =  161 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/80 (53%), Positives = 59/80 (73%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RILF M   G  + K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  
Sbjct: 1   RILFAMYSSGNTFEKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMH 60

Query: 115 GNFGSVDGDPPAAERYTECR 134
           GN GS+D DPPAA RYTE +
Sbjct: 61  GNNGSIDNDPPAAMRYTEAK 80


>gi|328724888|ref|XP_001948540.2| PREDICTED: DNA topoisomerase 2-like isoform 1 [Acyrthosiphon pisum]
 gi|328724890|ref|XP_003248280.1| PREDICTED: DNA topoisomerase 2-like isoform 2 [Acyrthosiphon pisum]
          Length = 1537

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 95/511 (18%), Positives = 177/511 (34%), Gaps = 47/511 (9%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+I  + DGLKP  R++LF  ++     +K+ +K A+++G V     YH HG  ++   
Sbjct: 702  ERSIASVVDGLKPGSRKVLFTCIK---RNDKREIKVAQLAGSVAEHSAYH-HGEVSLMST 757

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQ++  S  + L++  G FG+    G   A+ RY    L      +        + 
Sbjct: 758  IVNLAQNYVGSNNINLLQPIGQFGTRLQGGKDAASPRYIFTMLSPLTRLIFHPHDDPLLT 817

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  + D    EPV  +    P VLVNG  GI  G  T IP HN  EV+     ++   D 
Sbjct: 818  YLRD-DNQKIEPVWYMPI-IPMVLVNGAEGIGTGWMTKIPNHNPREVISNIKRMLRGED- 874

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                       P  P      G     +                 E       ++ +TE+
Sbjct: 875  ---------PLPMKPWYKNFTGHIEKLSEQKFISSG---------ELGVIGHNRVEITEL 916

Query: 272  PYQVNKAAMLEKIA--ELVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
            P  V      E +    L   ++    I D ++ +     + VI +            ++
Sbjct: 917  PVGVWTQNYKESVLEPMLTDTEKSPAVITDYKEYNTDTTIKFVITMNPEKLQKAENEGIH 976

Query: 329  RYTSLQSLFS-VNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            ++  L +     +M A +      +      IL+ F A R +   +R  YL       A 
Sbjct: 977  KFFKLHASIGLTSMCAFDKDCVLKKYEATQQILREFYAVRLDFYGKRKAYLEGMLGAEAA 1036

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L   A  +    +    I      E  +  L++R +N+  +K    + D  S       
Sbjct: 1037 KLTNQARFIVEKCDGDLRIENRKKSEMVKE-LVRRGYNSDPVKAWKLIQDRESVL----- 1090

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
               L E Q  A                 +++ N     +        +  +   +++++ 
Sbjct: 1091 ---LDEAQRIAEETEEDETAPSTSATSSKDDDNLDYDYLLGMSFWHLTLEKKNDLLRKKE 1147

Query: 506  LSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
                +     +++       D++     + E
Sbjct: 1148 EKCTELDILKKKSPADLWTEDLDALSLKLDE 1178


>gi|46370594|gb|AAS90119.1| DNA topoisomerase type 2 [Tetrahymena thermophila]
          Length = 1402

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 99/511 (19%), Positives = 187/511 (36%), Gaps = 54/511 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R+ILF   +  +   K  +K A++ G V     YH HG  ++   +
Sbjct: 681  RSIPSLCDGLKPGQRKILFSCFKRNL---KSEIKVAQLIGYVAEHSAYH-HGEQSLASTI 736

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+   G FG+    G   A+ RY    L K    L  +     + +
Sbjct: 737  IGMAQNFVGSNNINLMMPIGQFGTRNQGGKEHASARYIFTSLSKITRILFPEHDDHVLKY 796

Query: 154  RPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + D    EP   +    P  LVNG  GI  G +T+IP +N   +V+     ++     
Sbjct: 797  LED-DNQVVEPEWYMPI-IPMCLVNGSSGIGTGWSTDIPNYNHKGIVEQIRGKLEGRPFT 854

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               L    +G          G+  I       +G  +++G   I++     E I +TE+P
Sbjct: 855  --ELHPWYKG--------FQGQIEINP-----KGGYIVKGQYEIDEVE---ETIKITELP 896

Query: 273  YQ--VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
                     ++     L   K   +I D+R+          ++   G         + + 
Sbjct: 897  VGKWTRDYKVVLIQELLSPPKGEPEIEDIREYHTNNRVHFEVQAIPGRIQQW--GDIEKK 954

Query: 331  TSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKARDRAHVL 387
              L +      + +   K +         I++ F A R +   +R  YL++K +    +L
Sbjct: 955  LKLSTTMQTTNIVMFNDKYKLKRYQSTVEIMEEFYALRLKCYQKRKDYLVSKIQRDVDIL 1014

Query: 388  VGLAIAVANLDEVVRIIRFSPN------------PETARRELMQRSWNASDIKDLIDLID 435
                  +  +      IR +                 ++   +  + N  +  + +   +
Sbjct: 1015 QNKMKFITLVVNGTLEIRNARKKGVLNKLKELGLTPMSKITRINSTKNLDNEDEEVQQDE 1074

Query: 436  DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG--RDDIRNELNSLGIEIKECLDILSS 493
            +       +G + LSE     +L + +  LT     +   + E     + I +  +I   
Sbjct: 1075 EEEEEQVQEGEIPLSE--YNYLLSMPIFSLTEEKVLQLKKQVEEKESELLILQKKEIKDM 1132

Query: 494  RSRLLGIIKQELLSVKDELDTPRRTRIVEGL 524
             +  L    + +  V+++ +  R T      
Sbjct: 1133 WTEDLDKFIEVIEQVEEKEEKERLTGKGFTQ 1163


>gi|5456783|gb|AAD43655.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456784|gb|AAD43656.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456785|gb|AAD43657.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDLSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|259493813|gb|ACW82747.1| DNA topoisomerase IV subunit A [Vibrio cholerae]
          Length = 83

 Score =  161 bits (408), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   SELGLSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 121 DGDPP--AAERYTECRLQKAAHFL 142
           D DP   AA RYTE +L K A  L
Sbjct: 61  D-DPKSFAAMRYTEAKLSKFAEIL 83


>gi|5456797|gb|AAD43669.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++YDA+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|5456787|gb|AAD43659.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
 gi|5456788|gb|AAD43660.1| topoisomerase IV subunit A [Staphylococcus haemolyticus]
          Length = 82

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDSSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVAFV 82


>gi|50551479|ref|XP_503213.1| YALI0D23969p [Yarrowia lipolytica]
 gi|49649081|emb|CAG81413.1| YALI0D23969p [Yarrowia lipolytica]
          Length = 1537

 Score =  161 bits (407), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 88/458 (19%), Positives = 166/458 (36%), Gaps = 40/458 (8%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  +T + ++D +    + +++   + R+I  + DG KP  R++LFG  +     +   +
Sbjct: 757  DPKLTHIPVSDFINKELILFSMADNM-RSIASVCDGFKPGQRKVLFGSFKRKFTVS---I 812

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            + A++ G +     YH HG A++   +  MAQD+  S  + L++  G FGS    G   A
Sbjct: 813  RVAQLVGYISEHTGYH-HGEASLGSTIMAMAQDFAGSNNIYLMKPDGGFGSRSQGGKDAA 871

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVV-LCARYPNVLVNGGGGIAVG 185
            A RY +  L      + +   +   ++    D +  EP   L    P +LVNG  GI  G
Sbjct: 872  AMRYAQTELMDITKAIFNKQDEPLYNYV-TDDDTPVEPEYYLPV-LPMLLVNGCEGIGSG 929

Query: 186  MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
             +T+IP +N  ++VD    ++ +              P  P      G          G 
Sbjct: 930  WSTSIPPYNPLDIVDNLRRMLKDEP----------PVPMIPWFRGWHGEVE-----PVGD 974

Query: 246  GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEK-IAELVREKRIVDIADLRDESD 304
            G   ++G+        D   + +TE+P ++   +M E  ++ L+  K      +   E  
Sbjct: 975  GRYKVKGLIE----QVDERTLCITELPARMWTISMKEFLLSSLIDSKNEKGWIEDFTEDH 1030

Query: 305  RQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV-NMVALNGYK--PERFTLIGILKAF 361
                +  I L            L     L S  S  NMVA +      +  +   I+K +
Sbjct: 1031 GFRVKFNITLSEKEMEKTRQIGLRERFKLISSLSTSNMVAFDPEGRIKKYDSPEAIMKEY 1090

Query: 362  VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
               R E   +R   L++    +      L      +  ++       N            
Sbjct: 1091 FPVRLEFYQKRKDRLVSDFEQQL---EKLTAQARFIKLIIDKKLNINNKGRKVLIAELSE 1147

Query: 422  WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
                      + +   +    ++     S+     + E
Sbjct: 1148 LKFPRYGKNGERLASDAKAAIAEDEEAPSDEVAEDLAE 1185


>gi|49425331|gb|AAT66026.1| gyrase subunit A [Corynebacterium jeikeium]
          Length = 70

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 54/70 (77%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           RI G+VMGKYHPHG+ +IY+A+ RMAQD+S R  L++GQGNFGS+DGD  AA RYTE R+
Sbjct: 1   RIIGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARM 60

Query: 136 QKAAHFLLDD 145
            K    LL D
Sbjct: 61  TKITLELLRD 70


>gi|163955216|ref|YP_001648320.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
 gi|163638665|gb|ABY28024.1| hypothetical protein OsV5_244r [Ostreococcus virus OsV5]
          Length = 1072

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 98/482 (20%), Positives = 186/482 (38%), Gaps = 59/482 (12%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640  VKNLSITHFVRKDLVNFSLAD-LKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696  QLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755  YIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-I 248
            +P  N  ++ +               +   + G DF           +K  +   +G   
Sbjct: 814  VPPFNPKDIKE--------------NIQRSLEGHDF---------KEMKPWFRGFKGKVF 850

Query: 249  VIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               G    E        ++ VTE+P         E +  LV +K    I+   + S  + 
Sbjct: 851  KEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLVEKKV---ISGFTNNSTTED 907

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFR 365
                I    G +   +L  L    S  +    NM   +  K   +  +   ILK FV  R
Sbjct: 908  VDFEIM---GYTGKDVLKDLKMRKSFHTS---NMHLFHPTKGIYKYSSPEEILKDFVDLR 961

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +   +R ++L+   + +A       +A      V  +I         +++ ++R     
Sbjct: 962  LDHYKKRKEHLIKVLQTKA------TMAGYKSKFVTMVIEGDIVVFKRKKDDLERQ---- 1011

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +  +   I  +   + +  T+  +E   R +L         L      + ++   ++IK
Sbjct: 1012 -LAQIFPQIGGTYDYLLNIKTVQYTEECVRELLREAKQAREELEVMKGTSHIDMWKMDIK 1070

Query: 486  EC 487
              
Sbjct: 1071 NM 1072


>gi|27447212|gb|AAL99217.1| kinetoplast and nucleus-associated type II DNA topoisomerase [Bodo
            saltans]
          Length = 1247

 Score =  161 bits (406), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 24/370 (6%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            RA+P   DGLKP  R+IL+   + G       +K +++SG +  +  +H HG  ++   +
Sbjct: 693  RALPSAVDGLKPSQRKILWSCFRRGNANES--LKVSQLSGYISEVSAFH-HGEMSLQQTI 749

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQD+  S  + L+E +G FGS    G   AA RY   +L   A  +      + + F
Sbjct: 750  IKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHAAARYIFTKLSPLARLIFPKEDDELLQF 809

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN--PDI 211
              + +G + EP       P +LVNG  GI  G A  +  H+  +VV     ++    P  
Sbjct: 810  VED-EGKYVEPRFYVPIIPMLLVNGSVGIGFGFACTVQMHHPLDVVTVVRRMMRKNTPTQ 868

Query: 212  DLDALMEI---IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
             L+ L        G       V      + +      G    R              + V
Sbjct: 869  ALEGLRPWAVGYSGSVVQKTTVDEEGREVVSTTHVAMGRFTTR-------KVKGFPVVRV 921

Query: 269  TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLY 328
             E+P+      +  ++A+L  E +++ IAD    ++     VV+     AS   I     
Sbjct: 922  EELPWDRAIEQLRGRVAKLAEESKVLRIADY-SGANHVDSDVVLAADSFASPREIEKDFL 980

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
              +++ +  +V    +    P   ++  I++     R  +  +R +  L     +   L 
Sbjct: 981  LTSNVANNAAVYNPEMVL-SPLGESVESIVQWHYEQRLAMYTKRKERQLLLLNTQLKKLK 1039

Query: 389  GLAIAVANLD 398
                    L 
Sbjct: 1040 STLTFTETLR 1049


>gi|124108789|gb|ABM90971.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 70

 Score =  160 bits (405), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +
Sbjct: 1   KPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYM 60

Query: 110 LIEGQGNFGS 119
           L++GQGNFGS
Sbjct: 61  LVDGQGNFGS 70


>gi|60101260|gb|AAX13708.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 55/64 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|3282089|emb|CAA07512.1| topoisomerase II subunit A [Thermotoga neapolitana]
          Length = 139

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 56/195 (28%)

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
            +RFP+S +R   GRN+ GV+ I L  GD+V+SM +V                       
Sbjct: 1   IIRFPVSDVRRM-GRNAAGVQAIKLQPGDEVVSMDVVPS--------------------- 38

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG 824
                                          +E  ILTV+EKGFGKRT    +R+  R G
Sbjct: 39  -------------------------------EEGEILTVTEKGFGKRTPVQLYRVQKRGG 67

Query: 825 KGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
            G+R    S +N+ G +VAV  V  +++I++V+  G +IR+PV+EI +  R TKGV +  
Sbjct: 68  TGLRNI--SDVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVIGRVTKGVKLIE 125

Query: 885 TAKDERVVSVERIRE 899
              D+ +  V  +++
Sbjct: 126 LG-DDTISKVAVVKD 139



 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
           +IR PV+++R   R   GV        + VVS++ +   E  
Sbjct: 1   IIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGE 42



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 10/139 (7%)

Query: 608 IGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQ 667
                 R  A +  + L  G+ +        D        ++  T+ G  +R  +  +  
Sbjct: 8   DVRRMGRNAAGVQAIKLQPGDEV-----VSMDVVPSEEGEILTVTEKGFGKRTPVQLYRV 62

Query: 668 INRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGV 724
             R G     +   ++    ++V     + +I++ T+ G  +R P+S I V  GR + GV
Sbjct: 63  QKRGGTGLRNISDVNKTGHVVAVRYVKGDEEIVVVTRNGMMIRMPVSEIGVI-GRVTKGV 121

Query: 725 RGISLAKGDQVISMAIVLH 743
           + I L   D +  +A+V  
Sbjct: 122 KLIELG-DDTISKVAVVKD 139


>gi|122893197|gb|ABM67555.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893205|gb|ABM67559.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 61/79 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 1   IGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 142 LLDDLGKDTVDFRPNYDGS 160
           +L D+ KDTVDF PNYD +
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|296427790|gb|ADH16507.1| topoisomerase IV subunit A [Shigella flexneri 2a]
          Length = 83

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 3/84 (3%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 121 DGDPP--AAERYTECRLQKAAHFL 142
           D DP   AA RYTE RL K +  L
Sbjct: 61  D-DPKSFAAMRYTESRLSKYSELL 83


>gi|301110016|ref|XP_002904088.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096214|gb|EEY54266.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 1505

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 151/356 (42%), Gaps = 32/356 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DG KP  R++LF   +  +      +K A+++G V     YH HG A++   +
Sbjct: 761  RSIPSVMDGFKPSQRKVLFCCFKRNLRAE---LKVAQLAGYVSEHSAYH-HGEASLQGCI 816

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  + L+   G FG+  + G   A+ RY    L++    +   L  D + +
Sbjct: 817  VNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKY 876

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P VLVNG  GI  G ++++P +N  +++ G   +I+  +I  
Sbjct: 877  -LSEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWSSSVPNYNPLDIIKGLRQMINGEEIAP 935

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                           A   G            G+ +++G+  +     D   +VV+E+P 
Sbjct: 936  LTPWYRGFTGHIVEKANSRGTD---------TGNYIVQGLYEV----TDDSTLVVSELPV 982

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ--LYRYT 331
            +       + +  L+    I D  +  + +D +     I ++  A +DV      + +  
Sbjct: 983  KSWTQTYKQFLEGLLDAGTIKDFKE--NHTDVK-VLFTITMEPKALSDVTKAPGGIVKKF 1039

Query: 332  SLQSLFSVNMVALNG---YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L+S  S + + L     +  +      I+  F   R E   RR K +L K +D+ 
Sbjct: 1040 KLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQKLQDQI 1095


>gi|115448107|ref|NP_001047833.1| Os02g0699700 [Oryza sativa Japonica Group]
 gi|113537364|dbj|BAF09747.1| Os02g0699700 [Oryza sativa Japonica Group]
          Length = 956

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 19/227 (8%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           +  +D +    + +++  +L R+IP + DGLKP  R+ILF   +  +      +K A+ S
Sbjct: 682 IKYSDFINKELIQFSMADLL-RSIPSMVDGLKPGQRKILFCSFKRNLVKE---IKVAQFS 737

Query: 79  GEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTE 132
           G V     YH HG  ++   +  MAQD+  S  + L++  G FG+ D  G   A+ RY  
Sbjct: 738 GYVSEHSAYH-HGEQSLASTITGMAQDFVGSNNINLLQPNGQFGTRDQGGKDAASARYIF 796

Query: 133 CRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
             L      +         D   NY   DG   EP       P VLVNG  GI  G +T 
Sbjct: 797 TLLSPITRSIFPKDD----DILLNYLDEDGQSIEPTWYVPILPMVLVNGSEGIGTGWSTF 852

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRT 235
           IP +N  ++V     ++++  ++         +G    TG    G +
Sbjct: 853 IPNYNPRDIVANLRRLLNDEPVEPMDPWYRGFKGSIQKTGTKAGGVS 899


>gi|295315229|gb|ADF97702.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315233|gb|ADF97704.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315235|gb|ADF97705.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315237|gb|ADF97706.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315239|gb|ADF97707.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315241|gb|ADF97708.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315243|gb|ADF97709.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315245|gb|ADF97710.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315247|gb|ADF97711.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315249|gb|ADF97712.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315253|gb|ADF97714.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315255|gb|ADF97715.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315257|gb|ADF97716.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315259|gb|ADF97717.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315261|gb|ADF97718.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315263|gb|ADF97719.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315267|gb|ADF97721.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315271|gb|ADF97723.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315273|gb|ADF97724.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315277|gb|ADF97726.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315279|gb|ADF97727.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315281|gb|ADF97728.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315283|gb|ADF97729.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315285|gb|ADF97730.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315287|gb|ADF97731.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315289|gb|ADF97732.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315291|gb|ADF97733.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315293|gb|ADF97734.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315297|gb|ADF97736.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315299|gb|ADF97737.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315301|gb|ADF97738.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315303|gb|ADF97739.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315305|gb|ADF97740.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315307|gb|ADF97741.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315309|gb|ADF97742.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|212645845|ref|NP_498849.3| hypothetical protein R05D3.1 [Caenorhabditis elegans]
 gi|218512148|sp|P34534|TOP2M_CAEEL RecName: Full=Putative DNA topoisomerase 2, mitochondrial; Short=DNA
            topoisomerase II; Flags: Precursor
          Length = 1054

 Score =  160 bits (404), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 189/509 (37%), Gaps = 54/509 (10%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +E+ I+++++ +  I   S  + +    + + + V L R+IP L DGLKP  R+IL+ + 
Sbjct: 570  SENEITNEDDGKTEI---SYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL- 624

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
             +        +K ++++G V  +  YH HG  ++   + RM Q +  S  L L++  G F
Sbjct: 625  -LNNMDESTEIKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQF 682

Query: 118  GSV--DGDPPAAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            G+    G+  A+ RY    L      L     DDL +  V+     +G   EP  LC   
Sbjct: 683  GTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQKNVE-----EGMVVEPTWLCPIV 737

Query: 172  PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
            P +L+NG  GI  G +T I   N  +++D  +    +       +      P +      
Sbjct: 738  PLILINGTEGIGTGWSTKIANRNPIDIID-MIRRKIDSISTEYEI-----PPFYEEFRGK 791

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            L         ++G+  ++       E+ +     I + E+P  +  +   EK++++V   
Sbjct: 792  LEVVTPTKFISSGKIQLI-----RPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVE-- 844

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYK 348
              + + +  +    +     I L R  S+       + L  Y  L++  + N V  +   
Sbjct: 845  -TLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNG 903

Query: 349  --PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-GLAIAVANLDEVVRIIR 405
               E   +  I   F   R ++  +R K    +   +   +   L       +  + I  
Sbjct: 904  ELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEI-- 961

Query: 406  FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
                        M R+     ++++   +D  +    +        +    +  L    +
Sbjct: 962  ----------RSMGRNQLEEKLQEMGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEM 1011

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSR 494
              L     R        E  +   +  S 
Sbjct: 1012 KRLEERKSRRRTELEAAESADWKSVWRSE 1040


>gi|5456794|gb|AAD43666.1| topoisomerase IV subunit A [Staphylococcus epidermidis]
          Length = 82

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 43/82 (52%), Positives = 60/82 (73%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYYAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  LL D+ K+TV F 
Sbjct: 61  AKLSQLSEELLRDINKETVSFI 82


>gi|323455286|gb|EGB11155.1| hypothetical protein AURANDRAFT_22331 [Aureococcus anophagefferens]
          Length = 1228

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 141/360 (39%), Gaps = 40/360 (11%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++LF   +  +   KK +K A+++G V     YH HG  ++   +
Sbjct: 714  RSIPSVVDGLKPSQRKVLFACFKRKL---KKEIKVAQLAGYVSEHAAYH-HGEMSLTGTI 769

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQD+  S  + L+   G FG+  + G   A+ RY   +L+  A  +         DF
Sbjct: 770  VGMAQDFVGSNNVNLLTPAGQFGTRIMGGKDAASSRYIFTKLEAVARKVFHPDD----DF 825

Query: 154  RPNY---DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              +Y   DG   EP       P  L NG  GI  G AT++P +    ++ G +  + + D
Sbjct: 826  VLDYLEDDGQSIEPTYYVPVLPFALCNGADGIGTGWATSVPNYAPRALI-GVLRRMIDAD 884

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            +    L    RG  F    V  G          GR +              D   ++V E
Sbjct: 885  VGAADLAPHYRG--FGGDIVAKGGKNAGAFAVLGRAT------------RLDDVTVLVDE 930

Query: 271  IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG---ASADVILNQL 327
            +P+  +      ++     +K    + D ++          + + +G     A+  L  L
Sbjct: 931  LPW-THDYKQWLEVQLSGDDKTKAWVKDFKENHTDTRVSFTVTVTKGEDLDDAEAALGGL 989

Query: 328  YRYTSLQSLFSVNMVALNGYKP----ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             +   L+   + + +           +      ++KAF   R     +R  +L+   R R
Sbjct: 990  EKKFKLEGSLATSNMNFFDDTGLVIDKYDAPFDVIKAFYKVRVATYAKRKAHLVKAKRAR 1049


>gi|331028975|gb|AAM54162.3|L07144_1 Hypothetical protein R05D3.12a [Caenorhabditis elegans]
          Length = 1170

 Score =  159 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 95/509 (18%), Positives = 189/509 (37%), Gaps = 54/509 (10%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +E+ I+++++ +  I   S  + +    + + + V L R+IP L DGLKP  R+IL+ + 
Sbjct: 686  SENEITNEDDGKTEI---SYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTL- 740

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
             +        +K ++++G V  +  YH HG  ++   + RM Q +  S  L L++  G F
Sbjct: 741  -LNNMDESTEIKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQF 798

Query: 118  GSV--DGDPPAAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            G+    G+  A+ RY    L      L     DDL +  V+     +G   EP  LC   
Sbjct: 799  GTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQKNVE-----EGMVVEPTWLCPIV 853

Query: 172  PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
            P +L+NG  GI  G +T I   N  +++D  +    +       +      P +      
Sbjct: 854  PLILINGTEGIGTGWSTKIANRNPIDIID-MIRRKIDSISTEYEI-----PPFYEEFRGK 907

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            L         ++G+  ++       E+ +     I + E+P  +  +   EK++++V   
Sbjct: 908  LEVVTPTKFISSGKIQLI-----RPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVE-- 960

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYK 348
              + + +  +    +     I L R  S+       + L  Y  L++  + N V  +   
Sbjct: 961  -TLPVLEFSERHTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNG 1019

Query: 349  --PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-GLAIAVANLDEVVRIIR 405
               E   +  I   F   R ++  +R K    +   +   +   L       +  + I  
Sbjct: 1020 ELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEI-- 1077

Query: 406  FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARL 465
                        M R+     ++++   +D  +    +        +    +  L    +
Sbjct: 1078 ----------RSMGRNQLEEKLQEMGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEM 1127

Query: 466  TGLGRDDIRNELNSLGIEIKECLDILSSR 494
              L     R        E  +   +  S 
Sbjct: 1128 KRLEERKSRRRTELEAAESADWKSVWRSE 1156


>gi|290343684|ref|YP_003495051.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
 gi|260161099|emb|CAY39800.1| DNA topoisomerase II [Ostreococcus tauri virus 1]
          Length = 1072

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 97/482 (20%), Positives = 186/482 (38%), Gaps = 59/482 (12%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640  VKNLSITHFVRKDLVNFSLAD-LKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696  QLAAYVADKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755  YIFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCY 813

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-I 248
            +P  N  ++ +               +   + G DF           +K  +   +G   
Sbjct: 814  VPPFNPKDIKE--------------NIQRSLEGHDF---------KEMKPWFRGFKGKVF 850

Query: 249  VIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               G    E        ++ VTE+P         E +  L+ +K    I+   + S  + 
Sbjct: 851  KEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKV---ISGFTNNSTTED 907

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFR 365
                I    G +   +L  L    S  +    NM   +  K   +  +   ILK FV  R
Sbjct: 908  VDFEIM---GYTGKDVLKDLKMRKSFHTS---NMHLFHPTKGIYKYSSPEEILKDFVDLR 961

Query: 366  EEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNAS 425
             +   +R ++L+   + +A       +A      V  +I         +++ ++R     
Sbjct: 962  LDHYKKRKEHLIKVLQTKA------TMAGYKSKFVTMVIEGDIVVFKRKKDDLERQ---- 1011

Query: 426  DIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIK 485
             +  +   I  +   + +  T+  +E   R +L         L      + ++   ++IK
Sbjct: 1012 -LAQIFPQIGGTYDYLLNIKTVQYTEECVRELLREAKQAREELEVMKGTSHIDMWKMDIK 1070

Query: 486  EC 487
              
Sbjct: 1071 NM 1072


>gi|145496633|ref|XP_001434307.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124401431|emb|CAK66910.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1220

 Score =  159 bits (403), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/467 (19%), Positives = 174/467 (37%), Gaps = 43/467 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +  +   K+ +K  ++ G +     YH HG+ ++   +
Sbjct: 660  RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQLGGYIAEHSAYH-HGDISLVTTI 715

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+  +G FGS  + G   A+ RY    L K   ++  +     V +
Sbjct: 716  IGMAQNFVGSNNINLLLPRGQFGSRAMGGKDHASARYISTVLNKITRYIFPEQDDHVVKY 775

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P  LVNG  GI  G +T+I  +N  E+V+     ++    D 
Sbjct: 776  IED-DGEMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPVELVEQIKKRLNGEQFDN 834

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                                  G       G   +       I + + + + + + E+P 
Sbjct: 835  L-------------TPYYRNFDGNIETQPNGNSLVK-----GIIECNEETDIVTIKELPI 876

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            +       E + + + ++    I DLR+   +      I++  G  +   L   Y Y  L
Sbjct: 877  KKWTKNYKEWLDKEISQEGNP-IMDLREYHTKYKIHFEIQMTEGYVSQ--LKNPYEYFKL 933

Query: 334  QSLFSVNMVALNGYK---PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR---AHVL 387
             + FS N + L   +    +  ++  IL+ F   R +   +R  YLL+K        H  
Sbjct: 934  VTPFSNNNMVLFDGQNKIKKFESIAEILEEFYQVRLQFYQKRKDYLLSKLDREVQLLHNK 993

Query: 388  VGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
                  V + +  ++ ++ +   +   +    R      +          ++    +   
Sbjct: 994  SRFIKMVISEEIRLKNVKKADLVQQLDKNQFTRFSQLITVNS----TKMQAFGDSKNPKK 1049

Query: 448  YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
             + +  T    +            + +   N   ++I +   +LS  
Sbjct: 1050 NVDDNDTSEASDDEQVSKKKPENTENQQN-NKTTLDISDYNYLLSMP 1095


>gi|313844192|ref|YP_004061855.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
 gi|312599577|gb|ADQ91599.1| hypothetical protein OlV1_223c [Ostreococcus lucimarinus virus OlV1]
          Length = 1074

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/492 (18%), Positives = 175/492 (35%), Gaps = 49/492 (9%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            T       E     + ++SI++ +    + +++   L R+I  + DGLKP  R++++   
Sbjct: 626  TAKDPKELEVPYGNVRNLSISNFVHKDLVNFSLAD-LKRSIAHMADGLKPSQRKVMYACF 684

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
               +   K  +K A+++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G F
Sbjct: 685  HKNL---KDEMKVAQLAAFVAEKSAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQF 740

Query: 118  GS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
            G+  + G   +  RY   +L K A  + D      +++  + DG   EP       P VL
Sbjct: 741  GTRLMGGKDASQTRYIFTKLTKDARKIFDPRDDPILNYLDD-DGRPIEPDFYMPTLPMVL 799

Query: 176  VNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRT 235
            VNG  GI  G +  +P  N  ++ D     ++        +    +G  F         +
Sbjct: 800  VNGTEGIGTGFSCYVPPFNPKDIKDNIQKALEGHGFT--QMRPWFKG--FKGKIFKEDES 855

Query: 236  GIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVD 295
            G          S +  G+ H         ++ +TE+P         E +  LV +K    
Sbjct: 856  G----------SWIAEGIWHDT-----GSRLKITELPPGRWTQDYKEYLDTLVEKKV--- 897

Query: 296  IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLI 355
            I +  + S        I    G         L +   L+  F  + + L       +   
Sbjct: 898  ITNFTNNSTTDDVDFEIVGYSG-------KDLVKDLKLRKSFHTSNMHLFHPTKGIYKYN 950

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
                      ++ V  R  +   +      VL   A       + V ++         R 
Sbjct: 951  SPE----EILKDFVDLRLDHYKKRREHLIKVLQTKATMCGYKSKFVTMVIEGDIVVFKR- 1005

Query: 416  ELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRN 475
               +R      +  L   I  +   + +  T+  +E   R +L+        L      +
Sbjct: 1006 ---KRDDLERQLSQLFPKIGGTYDYLLNIKTVQYTEESVRELLKEAKQARDELEIMKKTS 1062

Query: 476  ELNSLGIEIKEC 487
             ++   ++IK  
Sbjct: 1063 HIDMWKMDIKNM 1074


>gi|60651678|gb|AAX32850.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|83367166|gb|ABC17642.1| putative DNA topoisomerase IIbeta [Trypanosoma brucei]
 gi|261335184|emb|CBH18178.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1465

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/488 (19%), Positives = 165/488 (33%), Gaps = 41/488 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K AR +G V     YH HG  ++   
Sbjct: 723  ERSIPSVVDGLKPGQRKIMFSAFKRNLV---RSLKVARFAGYVSEHAAYH-HGEQSLVQT 778

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  +  + L+   G FG+    G   AA RY   RL   A  +        V+
Sbjct: 779  IVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYISTRLTDIARRIYHPSDDFIVE 838

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   ++ 
Sbjct: 839  YRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQ 897

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P +      +         ++G  ++   GV HI +           +  
Sbjct: 898  PMK-------PWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFL 950

Query: 273  YQVNKAAMLEK-IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
                   + E+ I    RE       D       +  R  +   +G   + +  + Y + 
Sbjct: 951  -----EDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWV--AQGCVEERLQLREYIHA 1003

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +    F        G   +      +LK F   R E   RR ++LL + +  A  L  + 
Sbjct: 1004 TNIIAFDR-----EGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMV 1058

Query: 392  IAVANL--DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
              V  +     +   R   +     ++     +     K +                +  
Sbjct: 1059 RFVNEVIDGTFIVTRRSMKDVLKDLKQRGYTPFPPQQKKKMSSTTIVDEEDNDGARKILP 1118

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
                           +    +   +    +   EI     +L     LL +   +L    
Sbjct: 1119 D--------VFEFESVPLCEQVIGKMLCTAEPEEINMWKGVLVEYDYLLSLRMVDLTVEM 1170

Query: 510  DELDTPRR 517
                  +R
Sbjct: 1171 AMYFRTKR 1178


>gi|261335183|emb|CBH18177.1| DNA topoisomerase II, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1455

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/504 (19%), Positives = 183/504 (36%), Gaps = 38/504 (7%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   
Sbjct: 682  ERSIPSVVDGLKPGQRKIMFSAFKRNLV---RSLKVAQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  +  + L+   G FG+    G   AA RY   RL   A  +        V+
Sbjct: 738  IVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVE 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   ++ 
Sbjct: 798  YRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQ 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P +      +         ++G  ++   GV HI +           +  
Sbjct: 857  PMK-------PWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFL 909

Query: 273  YQVNKAAMLEK-IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
                   + E+ I    RE       D       +  R  +   +G   + +  + Y + 
Sbjct: 910  -----EDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWV--AQGCVEERLQLREYIHA 962

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +    F        G   +      +LK F   R E   RR ++LL + +  A  L  + 
Sbjct: 963  TNIIAFDR-----EGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMV 1017

Query: 392  IAVANL--DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
              V  +     +   R   +     ++     +     K +                   
Sbjct: 1018 RFVNEVIDGTFIVTRRSMKDVLKDLKQRGYTPFPPQQKKKMSSTTIVDEEEETERRNTAA 1077

Query: 450  SEVQTRAILELRLARLT----GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            +       + L+   L     G  +++   + N+   +    L + +  + +   +K +L
Sbjct: 1078 TSADAEEAIVLQPDELIGPGGGGAQEEPEVKQNARDYDYLLGLRLWNLTAEMSARLKAQL 1137

Query: 506  LSVKDELDT-PRRTRIVEGLLDME 528
             + +++ +   +RT       D++
Sbjct: 1138 DAAREKYENIAKRTPKDLWREDLD 1161


>gi|83367164|gb|ABC17641.1| DNA topoisomerase IIalpha [Trypanosoma brucei]
          Length = 1455

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/504 (19%), Positives = 183/504 (36%), Gaps = 38/504 (7%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   
Sbjct: 682  ERSIPSVVDGLKPGQRKIMFSAFKRNLV---RSLKVAQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  +  + L+   G FG+    G   AA RY   RL   A  +        V+
Sbjct: 738  IVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVE 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   ++ 
Sbjct: 798  YRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQ 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P +      +         ++G  ++   GV HI +           +  
Sbjct: 857  PMK-------PWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFL 909

Query: 273  YQVNKAAMLEK-IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
                   + E+ I    RE       D       +  R  +   +G   + +  + Y + 
Sbjct: 910  -----EDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWV--AQGCVEERLQLREYIHA 962

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +    F        G   +      +LK F   R E   RR ++LL + +  A  L  + 
Sbjct: 963  TNIIAFDR-----EGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMV 1017

Query: 392  IAVANL--DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
              V  +     +   R   +     ++     +     K +                   
Sbjct: 1018 RFVNEVIDGTFIVTRRSMKDVLKDLKQRGYTPFPPQQKKKMSSTTIVDEEEETERRNTAA 1077

Query: 450  SEVQTRAILELRLARLT----GLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
            +       + L+   L     G  +++   + N+   +    L + +  + +   +K +L
Sbjct: 1078 TSADAEEAIVLQPDELIGPGGGGAQEEPEVKQNARDYDYLLGLRLWNLTAEMSARLKAQL 1137

Query: 506  LSVKDELDT-PRRTRIVEGLLDME 528
             + +++ +   +RT       D++
Sbjct: 1138 DAAREKYENIAKRTPKDLWREDLD 1161


>gi|135998|sp|P12531|TOP2_TRYBB RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|162305|gb|AAA30256.1| DNA topoisomerase II [Trypanosoma brucei]
          Length = 1221

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 165/479 (34%), Gaps = 42/479 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFG-MMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
            RA+    DGLKP  R+I++  M + G E      K A++SG +     +H HG  ++ + 
Sbjct: 679  RALAHSVDGLKPSQRKIIWALMRRSGNEAA----KVAQLSGYISEASAFH-HGETSLQET 733

Query: 97   LARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            + +MAQ ++    + L+  +G FGS    G+  AA RY   +L K A  L        +D
Sbjct: 734  MIKMAQSFTGGNNVNLLVPEGQFGSRQQLGNDHAAPRYIFTKLSKVARLLFPSEDDPLLD 793

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +    +G   EP       P +L NG  GI  G ++NIP  +  +V     A+I   +  
Sbjct: 794  YIVE-EGQQVEPNHYVPILPLLLCNGSVGIGFGFSSNIPPFHRLDVSAAVRAMISG-ERA 851

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
               +  ++       G +  G  G     A G  +    G  H            VTE+P
Sbjct: 852  KSVVRRLVPWAVGFQGEIRRGPEG--EFIAVGTYTYCKGGRVH------------VTELP 897

Query: 273  YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            +  +  A  E I+ L  +  +  IAD    +      V I+++    A     +      
Sbjct: 898  WTCSVEAFREHISYLATKDIVNRIADYSGAN-----HVDIDVEVAQGAVNTYAECESELG 952

Query: 333  LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG-LA 391
            L     +N    +           +             RR      + +    +L   LA
Sbjct: 953  LTQRIHINGTVFSPNGTLSPLESDLTPVLQWHY----DRRLDLYKKRRQRNLTLLEQELA 1008

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
               + L  V        +   A    +++  +    K  +  +DDS   I      + ++
Sbjct: 1009 REKSTLKFVQHFGAGHIDFANATEATLEKVCS----KLGLVRVDDSFDYILRKPITFYTK 1064

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
                 +L+        +        +     E+ +         + +     +    + 
Sbjct: 1065 TSFENLLKKIAETERRIEALKKTTPVQLWLGELDQFDRFFQDHEKKMVEAILKERRQRS 1123


>gi|5456798|gb|AAD43670.1| topoisomerase IV subunit A [Staphylococcus hominis]
          Length = 82

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 42/82 (51%), Positives = 61/82 (74%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K A+  G+V+G+YHPHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE
Sbjct: 1   KSAKTVGDVIGQYHPHGDYSVYNAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTE 60

Query: 133 CRLQKAAHFLLDDLGKDTVDFR 154
            +L + +  L+ D+ K+TV F 
Sbjct: 61  AKLSQLSEELVRDINKETVSFI 82


>gi|74025306|ref|XP_829219.1| DNA topoisomerase II [Trypanosoma brucei TREU927]
 gi|70834605|gb|EAN80107.1| DNA topoisomerase II, putative [Trypanosoma brucei]
          Length = 1424

 Score =  159 bits (401), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 93/488 (19%), Positives = 166/488 (34%), Gaps = 41/488 (8%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLKP  R+I+F   +  +    + +K A+++G V     YH HG  ++   
Sbjct: 682  ERSIPSVVDGLKPGQRKIMFSAFKRNLV---RSLKVAQLAGYVSEHAAYH-HGEQSLVQT 737

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  +AQD+  +  + L+   G FG+    G   AA RY   RL   A  +        V+
Sbjct: 738  IVGLAQDYVGANNVPLLYRDGQFGTRLQGGKDHAAGRYIFTRLTDIARRIYHPSDDFIVE 797

Query: 153  FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
            +R + DG   EP       P VLVNG  GI  G ATNIP ++  +V+D    ++   ++ 
Sbjct: 798  YRDD-DGLSVEPFYYVPVIPMVLVNGTAGIGTGFATNIPNYSPLDVIDNLNRLLSGEELQ 856

Query: 213  LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                      P +      +         ++G  ++   GV HI +           +  
Sbjct: 857  PMK-------PWYFGFTGTIEEREKGKFVSSGCATVRPDGVVHITELPIGTWTQQYKKFL 909

Query: 273  YQVNKAAMLEK-IAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
                   + E+ I    RE       D       +  R  +   +G   + +  + Y + 
Sbjct: 910  -----EDLREREIVIQYREHNTDVTVDFEVFIHPEVLRQWV--AQGCVEERLQLREYIHA 962

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
            +    F        G   +      +LK F   R E   RR ++LL + +  A  L  + 
Sbjct: 963  TNIIAFDR-----EGKITKYLDAESVLKEFYLVRLEYYARRREFLLEQLQRAALKLENMV 1017

Query: 392  IAVANL--DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
              V  +     +   R   +     ++     +     K +                +  
Sbjct: 1018 RFVNEVIDGTFIVTRRSMKDVLKDLKQRGYTPFPPQQKKKMSSTTIVDEEDNDGARKILP 1077

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
                           +    +   +    +   EI     +L     LL +   +L    
Sbjct: 1078 D--------VFEFESVPLCEQVIGKILCTAEPEEINMWKGVLVEYDYLLSLRMVDLTVEM 1129

Query: 510  DELDTPRR 517
                  +R
Sbjct: 1130 AMYFRTKR 1137


>gi|145491451|ref|XP_001431725.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398830|emb|CAK64327.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1274

 Score =  158 bits (400), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 36/374 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +  +   K+ +K  ++ G +     YH HG+ ++   +
Sbjct: 673  RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQLGGYIAEHSAYH-HGDLSLVSTI 728

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+  +G FGS  + G   A+ RY    L K   ++  +     + +
Sbjct: 729  IGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHLLKY 788

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG   EP       P  LVNG  GI  G +T+I  +N  E+V+     +D      
Sbjct: 789  QED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIELVNQIKNRLDGQ---- 843

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                     P  P         GI      G G  +I+G+    + +   + I + E+P 
Sbjct: 844  ---------PFQPMTPFYRNFDGIIENLPNGNG--IIKGIIDCNEAT---DIITIRELPI 889

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            +       E + + + E+    I DLR+   +      I++  G  +D  L     Y  L
Sbjct: 890  KKWTRNYKEWLDKEMAEE-GSQIVDLREYHTKYKIHFEIQMVDGFVSD--LKNPLEYFKL 946

Query: 334  QSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-G 389
             +  S + + L   N    +   +  I++ F   R +   +R +YL++K      +L   
Sbjct: 947  STPASCSNMVLFDSNNKIKKYECVSDIMEEFYQVRLQFYHKRKEYLVSKLDREVQLLDNK 1006

Query: 390  LAIAVANLDEVVRI 403
            L      + E ++I
Sbjct: 1007 LKFIKMVISEEIQI 1020


>gi|60101274|gb|AAX13715.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 54/63 (85%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG++++Y+A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYNAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 131 TEC 133
           TE 
Sbjct: 61  TEA 63


>gi|314055306|ref|YP_004063644.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
 gi|313575197|emb|CBI70210.1| DNA topoisomerase II [Ostreococcus tauri virus 2]
          Length = 1072

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 88/480 (18%), Positives = 172/480 (35%), Gaps = 55/480 (11%)

Query: 16   ITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCA 75
            + ++SIT  ++   + +++   L R+I  + DGLKP  R++++      +   K  +K A
Sbjct: 640  VKNLSITHFVRKDLVNFSLAD-LKRSIAHMADGLKPSQRKVMYACFHKNL---KDEMKVA 695

Query: 76   RISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAER 129
            +++  V  K  YH HG  ++ D + ++A D+  S  + L+E  G FG+  + G   +  R
Sbjct: 696  QLAAYVADKSAYH-HGEVSLADTIVKLANDYTGSNNINLLEPCGQFGTRLMGGKDASQTR 754

Query: 130  YTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
            Y   +L K A  + D      +++  + DG   EP       P VLVNG  GI  G +  
Sbjct: 755  YIFTKLTKEARKIFDPRDDPILNYLDD-DGRSIEPDFYMPTIPMVLVNGTEGIGTGFSCY 813

Query: 190  IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS-I 248
            +P  N  ++ +     ++                             +   +   +G   
Sbjct: 814  VPPFNPKDIKENIQRALEG-----------------------HSFKDMSPWFRGFKGKIF 850

Query: 249  VIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG 307
               G    E        ++ VTE+P         E +  L+ +K    I+   + S  + 
Sbjct: 851  KEDGTWITEGVWRDTGSRLKVTELPPGRWTQDYKEYLDILIEKKV---ISGFTNNSTTED 907

Query: 308  YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
                I    G +   IL  L    S  +              +  +   ILK FV     
Sbjct: 908  VDFEIM---GYTGKDILKDLKLRKSFHTSNMHLFHP-VKGIYKYSSPEEILKDFVD---- 959

Query: 368  VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
                R ++   +      VL   +       + V ++         R    ++      +
Sbjct: 960  ---LRLEHYKRRREHLIKVLEVRSKMCGYKSKFVTMVIEGQIVVFKR----KKDDLERQL 1012

Query: 428  KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
              +   I+ +   + +  T+  +E   R +L+        L      + ++   ++IK  
Sbjct: 1013 AGIFPKINGTYDYLLNIKTVQYTEECVRELLKESKQAREELEVMKGTSHIDMWKMDIKNM 1072


>gi|237830295|ref|XP_002364445.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|211962109|gb|EEA97304.1| DNA topoisomerase II, putative [Toxoplasma gondii ME49]
 gi|221507315|gb|EEE32919.1| DNA topoisomerase II, putative [Toxoplasma gondii VEG]
          Length = 1687

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 146/408 (35%), Gaps = 44/408 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
              R+IP L DG KP  R++LF  ++  ++     +K A+++G V  +  YH HG A++  
Sbjct: 793  TERSIPQLVDGWKPGQRKVLFACIKKNMKHE---LKVAQLAGYVSEVSAYH-HGEASLQQ 848

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  L  +E  G FGS    G   +A RY   RL      +  +     +
Sbjct: 849  TIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPIL 908

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++    +G   EP +     P VL+NG  GI  G ++ +P +N  +V++     ID  + 
Sbjct: 909  EYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEE- 966

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-----TSGDREQI 266
                                     +   Y   RG I         +          +  
Sbjct: 967  ----------------------MQRMTPWYRGFRGRIEENAAGTGFETIGLVRRCGEDTY 1004

Query: 267  VVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             +TE+P +       E + E     EKR   IAD RD S  +     +++          
Sbjct: 1005 EITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVKVGEERVERPER 1064

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKAR 381
              L +Y  L+S  S+  + L               I+K F   R E   RR  Y L    
Sbjct: 1065 EGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKEFAPIRLEFYHRRKAYCLAMLE 1124

Query: 382  DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                +L      +  +     II              Q      +I+D
Sbjct: 1125 KARRILSNRLRFILAVVNGELIINNKRKKALIEELFSQGYDPMKEIED 1172


>gi|295315227|gb|ADF97701.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315231|gb|ADF97703.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315251|gb|ADF97713.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315265|gb|ADF97720.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315269|gb|ADF97722.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315275|gb|ADF97725.1| gyrase subunit A [Campylobacter jejuni]
 gi|295315295|gb|ADF97735.1| gyrase subunit A [Campylobacter jejuni]
          Length = 77

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 47/77 (61%), Positives = 57/77 (74%)

Query: 42  IPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMA 101
           +PD RDGLKPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMA
Sbjct: 1   LPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMA 60

Query: 102 QDWSLRLLLIEGQGNFG 118
           QD+S+R   I GQGNFG
Sbjct: 61  QDFSMRYPSITGQGNFG 77


>gi|221487518|gb|EEE25750.1| DNA topoisomerase II, putative [Toxoplasma gondii GT1]
          Length = 1688

 Score =  158 bits (398), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 91/408 (22%), Positives = 146/408 (35%), Gaps = 44/408 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
              R+IP L DG KP  R++LF  ++  ++     +K A+++G V  +  YH HG A++  
Sbjct: 793  TERSIPQLVDGWKPGQRKVLFACIKKNMKHE---LKVAQLAGYVSEVSAYH-HGEASLQQ 848

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  L  +E  G FGS    G   +A RY   RL      +  +     +
Sbjct: 849  TIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPIL 908

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++    +G   EP +     P VL+NG  GI  G ++ +P +N  +V++     ID  + 
Sbjct: 909  EYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEE- 966

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK-----TSGDREQI 266
                                     +   Y   RG I         +          +  
Sbjct: 967  ----------------------MQRMTPWYRGFRGRIEENAAGTGFETIGLVRRCGEDSY 1004

Query: 267  VVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             +TE+P +       E + E     EKR   IAD RD S  +     +++          
Sbjct: 1005 EITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVKVGEERVERPER 1064

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKAR 381
              L +Y  L+S  S+  + L               I+K F   R E   RR  Y L    
Sbjct: 1065 EGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKEFAPIRLEFYHRRKAYCLAMLE 1124

Query: 382  DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                +L      +  +     II              Q      +I+D
Sbjct: 1125 KARRILSNRLRFILAVVNGELIINNKRKKALIEELFSQGYDPMKEIED 1172


>gi|325119604|emb|CBZ55157.1| hypothetical protein NCLIV_055820 [Neospora caninum Liverpool]
          Length = 1641

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 145/408 (35%), Gaps = 44/408 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYD 95
              R+IP L DG KP  R++LF  ++  ++     +K A+++G V  +  YH HG A++  
Sbjct: 764  TERSIPQLVDGWKPGQRKVLFACIKKNMKHE---IKVAQLAGYVAEVSAYH-HGEASLQQ 819

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQ +  S  L  +E  G FGS    G   +A RY   RL      +  +     +
Sbjct: 820  TIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYIFTRLAFYTRLVFHEADDPIL 879

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++    +G   EP +     P VL+NG  GI  G ++ +P +N  +V++     ID  + 
Sbjct: 880  EYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVPNYNPRDVIENLRRYIDGEE- 937

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKT-----SGDREQI 266
                                     +   Y   RG I         +T            
Sbjct: 938  ----------------------MQRMTPWYRGFRGKIEENSAGTGFETSGLVEKCGEGAF 975

Query: 267  VVTEIPYQVNKAAMLEKIAEL--VREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             +TE+P +       E + E     EKR   IAD RD S  +     +++          
Sbjct: 976  EITELPIKKWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVKVSEERLERPER 1035

Query: 325  NQLYRYTSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRRTKYLLNKAR 381
              L +Y  L++  S   + L               I+K F   R +   RR  Y L    
Sbjct: 1036 EGLEKYFKLKTSLSTTNLTLFDPHGRVQRYANELEIIKEFAPIRLDFYHRRKAYCLAMLE 1095

Query: 382  DRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
                +L      +  +     II              Q      +I+D
Sbjct: 1096 KSRRILSNRLRFILAVVNGQLIINNKRKKVLVEELFSQGYDPMKEIED 1143


>gi|60651684|gb|AAX32853.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|118139706|gb|ABK63299.1| DNA gyrase subunit A [Arcobacter cryaerophilus]
          Length = 89

 Score =  157 bits (397), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 45/82 (54%), Positives = 58/82 (70%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+ +GK+ PHG+ + +DAL RMAQ +S R  L++GQGNFG++DGD  AA R
Sbjct: 8   AYKKSARIVGDDIGKHQPHGDTSAHDALVRMAQSFSTRAPLVDGQGNFGTIDGDSAAATR 67

Query: 130 YTECRLQKAAHFLLDDLGKDTV 151
           YTE R+ + A   L DL KDTV
Sbjct: 68  YTEARMTRIAEEELRDLDKDTV 89


>gi|60101266|gb|AAX13711.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|60101262|gb|AAX13709.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  157 bits (397), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|60101264|gb|AAX13710.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|122893195|gb|ABM67554.1| DNA topoisomerase IV [Staphylococcus intermedius]
 gi|122893203|gb|ABM67558.1| DNA topoisomerase IV [Staphylococcus schleiferi subsp. coagulans]
          Length = 79

 Score =  157 bits (396), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 43/79 (54%), Positives = 60/79 (75%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           +G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  
Sbjct: 1   IGQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQ 60

Query: 142 LLDDLGKDTVDFRPNYDGS 160
           +L D+ KDTVDF PNYD +
Sbjct: 61  ILRDINKDTVDFVPNYDDT 79


>gi|312192217|gb|ADQ43805.1| DNA gyrase subunit A [Aerococcus sanguinicola]
          Length = 68

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/68 (61%), Positives = 57/68 (83%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+GM ++GV  +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G 
Sbjct: 1   RILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGH 60

Query: 115 GNFGSVDG 122
           GNFGS+DG
Sbjct: 61  GNFGSIDG 68


>gi|253742615|gb|EES99414.1| DNA topoisomerase II [Giardia intestinalis ATCC 50581]
          Length = 1492

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/488 (15%), Positives = 152/488 (31%), Gaps = 49/488 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            RAIP L DGLKP  R++L+   +  +   K  +K +++SG V  K  YH HG A++   +
Sbjct: 756  RAIPSLMDGLKPGQRKVLYACFKRNL---KSKLKVSQLSGYVSDKAAYH-HGEASLNGTI 811

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  + L+   G FGS    G   +A RY    L   A +L  +     + +
Sbjct: 812  VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQY 871

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG   EP       P VL+NG  GI  G +T IP  +  +++   + +        
Sbjct: 872  KED-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIPQFDPLDMLHS-IRLRIYGKTTR 929

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
            +    +    +   G +                   + G   +         I +T++P 
Sbjct: 930  NEKRNLKPFSNGWKGTMTHEYDKSGKFVR-----WRMTGCFSVVDLK----TIQITDLPI 980

Query: 274  QVNKAAMLEKIAELVREKRIVDIA---DLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
             V   +  E+I   ++             +  S  +G     + K   +      +    
Sbjct: 981  GVWTESYREEIETWIKGNEEAGAVKKPAAKVASTAKG-----KPKLKGAPSAAKEKATTK 1035

Query: 331  TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
              L    +     ++    +   +       +         R                 L
Sbjct: 1036 DQLYDSVTGYYKGIHPALMKVIDMSDNNTVNIIVTLSDECARY----------------L 1079

Query: 391  AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDD-SSYTIGSDGTMYL 449
                    +    +  +      +   +  S   S++    +       +T       + 
Sbjct: 1080 IGTSDADIKSCNTVGTARYDNIVKGFKLDGSIRPSNMWLYNERNMLCLYHTPFKIIDAFY 1139

Query: 450  SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
            ++      +      +    +  + NE       I E    + +  R            K
Sbjct: 1140 TKRLALYGVRRNNQLIDMDDKSLMLNEKARFIKLIIEDKLNIKNVPRDSVTEILW---NK 1196

Query: 510  DELDTPRR 517
             +    R+
Sbjct: 1197 YQFHPSRK 1204


>gi|60651690|gb|AAX32856.1| GyrA [Riemerella anatipestifer]
          Length = 69

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 53/63 (84%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60

Query: 131 TEC 133
           TE 
Sbjct: 61  TEA 63


>gi|60651692|gb|AAX32857.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|60101272|gb|AAX13714.1| GyrA [Riemerella anatipestifer]
          Length = 64

 Score =  157 bits (396), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|60101276|gb|AAX13716.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 2   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 61

Query: 130 YTEC 133
           YTE 
Sbjct: 62  YTEA 65


>gi|11359849|gb|AAG34730.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 90

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/90 (50%), Positives = 62/90 (68%), Gaps = 3/90 (3%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPA--A 127
           K+ K  R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+ + D DP +   
Sbjct: 2   KFKKSDRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWRAPD-DPKSFVV 60

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNY 157
            RYTE RL K A  LL +LG+ TVD+ PN+
Sbjct: 61  IRYTESRLSKYAEVLLGELGQVTVDWVPNF 90


>gi|60651686|gb|AAX32854.1| GyrA [Riemerella anatipestifer]
          Length = 70

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|67590421|ref|XP_665482.1| DNA topoisomerase II [Cryptosporidium hominis TU502]
 gi|54656191|gb|EAL35251.1| DNA topoisomerase II [Cryptosporidium hominis]
          Length = 1069

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP+L DGLKP  R++LF   +  +      +K A+++G V     YH HG +++   +
Sbjct: 100 RSIPNLLDGLKPGQRKVLFATFKKKLNNE---LKVAQLAGYVAEHSAYH-HGESSLQSTI 155

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++  S  L L+E  G FGS    G   +A RY   +L K   ++  +     + +
Sbjct: 156 VNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLLTY 215

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + DG   EP+      P +LVNG  GI  G ++++P +N  +++     ++    +  
Sbjct: 216 LYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDIIMNLKRMLKGEMMIP 274

Query: 214 DALM-EIIRGPDFP 226
                +  +G  FP
Sbjct: 275 MTPWYKSFKGKIFP 288


>gi|66357004|ref|XP_625680.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
 gi|46226680|gb|EAK87659.1| DNA topoisomerase II [Cryptosporidium parvum Iowa II]
          Length = 1797

 Score =  156 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP+L DGLKP  R++LF   +  +      +K A+++G V     YH HG +++   +
Sbjct: 830  RSIPNLLDGLKPGQRKVLFATFKKKLNNE---LKVAQLAGYVAEHSAYH-HGESSLQSTI 885

Query: 98   ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  L L+E  G FGS    G   +A RY   +L K   ++  +     + +
Sbjct: 886  VNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASAARYIFTKLSKWTRYIFPEADDPLLTY 945

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP+      P +LVNG  GI  G ++++P +N  +++     ++    +  
Sbjct: 946  LYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWSSSVPNYNPKDIIMNLKRMLKGEMMVP 1004

Query: 214  DALM-EIIRGPDFP 226
                 +  +G  FP
Sbjct: 1005 MTPWYKSFKGKIFP 1018


>gi|47419976|gb|AAT27340.1| DNA gyrase A [Campylobacter jejuni]
          Length = 274

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 116/300 (38%), Positives = 181/300 (60%), Gaps = 26/300 (8%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT 
Sbjct: 1   KREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S 
Sbjct: 107 ------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSE 154

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP  
Sbjct: 155 TLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSK 214

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQAR 614
            Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P GS  A+
Sbjct: 215 QYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274



 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 91/209 (43%), Gaps = 18/209 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 78  IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 128

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 129 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 188

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      + I    + F  N 
Sbjct: 189 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE---SFFTANT 245

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATK 878
           +D ++ V+D+G L  + V +I   SR  K
Sbjct: 246 HDTLMFVTDRGQLYWLKVYKIPEGSRTAK 274


>gi|4691547|gb|AAD27958.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 77

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G++ + K  K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LIEGQGN+GS 
Sbjct: 1   SELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSP 60

Query: 121 DGDPP--AAERYTECRLQ 136
           D DP   AA RYTE +L 
Sbjct: 61  D-DPKSFAAMRYTEAKLS 77


>gi|294950051|ref|XP_002786436.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
 gi|239900728|gb|EER18232.1| DNA topoisomerase 2-alpha, putative [Perkinsus marinus ATCC 50983]
          Length = 1579

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 139/345 (40%), Gaps = 39/345 (11%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            + R+IP + DG KP  R++LF  ++  ++ +    K A+  G V     YH HG  ++  
Sbjct: 704  VMRSIPSMVDGFKPSQRKVLFCALKRNLKSDT---KVAQFVGYVSEHSAYH-HGEQSLES 759

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQD+  S  L L+   G FG+    G   A+ RY   RL K    +      D +
Sbjct: 760  CIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYTRLSKYTRTIFHPDDDDVL 819

Query: 152  DFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            ++    +G   EP   C   P VLVNG  GI  G +TN+ +++  E++    A+I    +
Sbjct: 820  EY-LTEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPREIIHLLRALIRG--V 876

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
            +L  +    RG  F        + G         G + +         + D   + +TE+
Sbjct: 877  ELHDIHPWYRG--FTGSVERNDKNG-----YDFVGKVRM---------ASDDRTVDITEL 920

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ-LYRY 330
            P +       + +  LV    ++                   L+  A+  V+ +  L + 
Sbjct: 921  PVKTWTQNY-KDLDTLVVSVILLGRYH-----TEHSVHFKCTLQNEAAKSVVDSLGLEKA 974

Query: 331  TSLQSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRR 372
              L+S FS   + L     +         I+K F   R ++ V+R
Sbjct: 975  FKLRSAFSTTNMVLFDRDGKIRRYDSVLDIIKDFADLRLDMYVKR 1019


>gi|37911071|gb|AAR04870.1| gyrase A [Campylobacter jejuni]
          Length = 77

 Score =  156 bits (394), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/77 (59%), Positives = 56/77 (72%)

Query: 55  RILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           RIL+ M     +    +VK ARI G V+G+YHPHG+AA+YDAL RMAQD+S+R   I GQ
Sbjct: 1   RILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDAAVYDALVRMAQDFSMRYPSITGQ 60

Query: 115 GNFGSVDGDPPAAERYT 131
           GNFGS+DGD  AA RYT
Sbjct: 61  GNFGSIDGDSAAAMRYT 77


>gi|215480315|gb|ACJ67502.1| DNA gyrase subunit A [Bacillus subtilis]
          Length = 233

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 107/250 (42%), Positives = 154/250 (61%), Gaps = 26/250 (10%)

Query: 271 IPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY 330
            P QVNKA ++EKIA+LVR+K+I  I DLRDESDR G R+VIE++R A+A+VILN LY+ 
Sbjct: 1   FPSQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEIRRDANANVILNNLYKQ 60

Query: 331 TSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGL 390
           T+LQ+ F +N++AL   +P+  TL   L+ ++  ++ V+ RRT Y L KA  RAH+L GL
Sbjct: 61  TALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGL 120

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            +A+ +LD V+ +IR S   E AR  L+++                            L+
Sbjct: 121 RVALDHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLT 154

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E Q +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+
Sbjct: 155 EKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKE 214

Query: 511 ELDTPRRTRI 520
             +  RRT I
Sbjct: 215 RFNDERRTEI 224


>gi|1834317|dbj|BAA11510.1| DNA topoisomerase II [Dictyostelium discoideum]
          Length = 1282

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/417 (21%), Positives = 164/417 (39%), Gaps = 47/417 (11%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  ++  D +    + Y+    L R+IP L DGLKP  R+ILF   +  +      +
Sbjct: 781  DHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNE---I 836

Query: 73   KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K +++SG V  +  YH HG  ++   + +MA ++  S  L L+   G FG+    G   A
Sbjct: 837  KVSQLSGYVAEQTSYH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSA 895

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQE---PVVLCARYPNVLVNGGGGIA 183
            + RY   +L+       ++L     D   NY     E   P       P +LVNG  GI 
Sbjct: 896  SARYI-LQLEPVGTLPFNELD----DPLLNYLEEEGESIQPDYYIPIIPMLLVNGSEGIG 950

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
            VGM+T+IP  +  +++D  + +  N  + L  L+   RG               ++ Y T
Sbjct: 951  VGMSTSIPLFSPIDIID-QLMLRLNNQVALKKLIPWYRGFKGTISPD-------RHTYRT 1002

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
              G I + G             + +TE+P     +   E + +L+ +  I    +   E+
Sbjct: 1003 -NGVIKLVGR-----------NLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQESNTEN 1050

Query: 304  DRQGYRVVIELKRG---ASADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGIL 358
                    I L         D+  N+L +   L +  + ++   +      +  ++  I+
Sbjct: 1051 S---VHFTILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEII 1107

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARR 415
              F   R +   +R +YLL    ++   L      +  +      I+     +  + 
Sbjct: 1108 DQFYKVRLQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKE 1164


>gi|60651688|gb|AAX32855.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K +RI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSSRIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTECRL 135
           YTE  L
Sbjct: 61  YTEAHL 66


>gi|315273180|ref|ZP_07869219.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616193|gb|EFR89279.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 171

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 77/192 (40%), Gaps = 56/192 (29%)

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           FP   IRV  GR + GVRGI L                                      
Sbjct: 2   FPEENIRVM-GRTAAGVRGIRLR------------------------------------- 23

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                              E    E+   ++ +L V+EKG+GK+T +  + + NR G G+
Sbjct: 24  ----------------EDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGV 67

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +   +++ N  G LVA+  V   + ++L++  G LIR  +  +    R+  GV +    +
Sbjct: 68  KTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDE 125

Query: 888 DERVVSVERIRE 899
           DE+V +V ++ +
Sbjct: 126 DEKVATVAKVPK 137



 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLT 699
           ++  V+  T+ G  ++   S +  +   G + +K     +    +++++T T E D++L 
Sbjct: 36  DDEKVLVVTEKGYGKQTPASQYP-LRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLM 94

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  G  +RF I  +    GR+++GV+ I L + ++V ++A V   + + +      + + 
Sbjct: 95  TVSGVLIRFEIETV-SQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLI 153

Query: 760 AQRRLISGDTEEITSLKN 777
            Q    S +    + ++ 
Sbjct: 154 TQVPDESFEDAPGSDIEE 171



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            P   IR+  R   GV      +D+ V+ +E + + E
Sbjct: 2   FPEENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDE 38


>gi|296418623|ref|XP_002838930.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634913|emb|CAZ83121.1| unnamed protein product [Tuber melanosporum]
          Length = 1612

 Score =  155 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/550 (16%), Positives = 195/550 (35%), Gaps = 53/550 (9%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  I  +S  + +    + +++   + R+IP + DGLKP  R+ILF   +  +      +
Sbjct: 672  DHSIDKISYPEFVNKELILFSMADNI-RSIPSVVDGLKPGQRKILFACFKRKLTKQ---L 727

Query: 73   KCARISGEVMG--KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K + +SG V     Y  HG +++   +  MAQ +  S  + L+E +G+FG+    G   A
Sbjct: 728  KVSELSGFVSECTAYQ-HGESSLQVTITGMAQTFVGSNNVNLLEPEGSFGTRLDGGKDAA 786

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY    L   A  L        + +  + D    EP+      P VL+NG  GI  G 
Sbjct: 787  SPRYIYTLLSPFARKLFPATDDPLLTYNLD-DDKKIEPMWYAPVVPLVLINGADGIGTGW 845

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            +T IP +N  +VV     +++N +++          P  P      G+            
Sbjct: 846  STTIPNYNPEDVVANIRRLMNNEELE----------PMTPWYRDWAGKVEQVAVDKFKFS 895

Query: 247  SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQ 306
             ++            D     V E+P ++      EK+ E+++ ++   + D  D +  +
Sbjct: 896  GVI---------NQIDGVTCEVRELPIKMWTQEFKEKLEEIIKGEKS-FVKDYVDYNSPR 945

Query: 307  GYRVVIELKRGASADVILN----QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFV 362
                +I ++        L       ++ T   +  ++      G   +  ++  ILK F 
Sbjct: 946  RVHFIITMESEKHMQEALAEGLVNRFKLTKTIATSNLVAFDPEGRINKYASVNDILKEFY 1005

Query: 363  AFREEVVVRRTKYLLNKARDRAHVL-------------VGLAIAVANLDEVVRIIRFSPN 409
              R +    R   +L +   +                           + +  +++   +
Sbjct: 1006 YIRLKYYQERKDNMLKEMSKQLMKYTNQARFVQMIIKKELAVSGRKRSEIIEDLVKKKFD 1065

Query: 410  PETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLG 469
              + + E  +       +++    + D    +       L+  + + +L+    +   + 
Sbjct: 1066 KISNKAEAQKAGETEDTVEEEDSTVGDGYNYLLGMAIWSLTHEKVQKLLQDVADKELEVD 1125

Query: 470  RDDIRNE----LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
                ++        L   I+E    L    +  G + +   + K      +  +   G  
Sbjct: 1126 ELIKKSPKDLWNTELDAFIEEWRIQLEEDKKEQGTVVKRKKNGKYGAKIAKGKKKAAGSD 1185

Query: 526  DMEDEDCIVR 535
            + + E    +
Sbjct: 1186 ESDFEASKPK 1195


>gi|300176630|emb|CBK24295.2| unnamed protein product [Blastocystis hominis]
          Length = 1173

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/537 (17%), Positives = 187/537 (34%), Gaps = 77/537 (14%)

Query: 27   NSYLTYAIN--VILG---------------RAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
             SY+ Y  +   I                 R+IP + DGLKP  R++L G +Q  +    
Sbjct: 676  ESYIDYEKSPVSIYDFINKELIQFSRQDCIRSIPSMIDGLKPSQRKVLHGCIQRNLTKE- 734

Query: 70   KYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGD 123
              +K  ++SG +     YH HG  ++   +  MAQD+  S  +  +   G FG+  + G 
Sbjct: 735  --IKVVQLSGYISESVLYH-HGEQSLNQTIISMAQDFVGSNNMNFLVPNGQFGTRLMGGK 791

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              A+ RY    L      +  +     +  +   +G   EP       P VLVNG  GI 
Sbjct: 792  DSASPRYIYTYLHPITKHVFREEDSALLPSQEE-EGVHIEPSYYLPILPTVLVNGAVGIG 850

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +TN+  HN  EV D  +A +     +          P +P         G       
Sbjct: 851  TGWSTNVCNHNPIEVADALIAQLRGTRSNR---------PLYPW------YRGFVGQILK 895

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
                  + G         D   + +TE+P         + + +LV +     +   R+  
Sbjct: 896  KENGYQVCGNVSW----IDENTLAITELPVGRWTQDYKQFLCDLVEQG--DVVTGFRENH 949

Query: 304  DRQGYRVVIELKRGASADVILN--QLYRYTSLQSLFSVNMVALNGYKPERFTL---IGIL 358
                    + +K+  +A++  N  +L +   L    + +   L   K           I+
Sbjct: 950  TDTEVMFTVTVKKEKAAELKENREKLMKDLRLIGSLTTSNFILFNSKGHIHHYKDANEIM 1009

Query: 359  KAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
            + F+ FR     +R + L+ +   +  +L   +  + ++ +   ++             +
Sbjct: 1010 EEFIEFRLPFYQQRRENLMKQLDKKCKLLENKSNFIQHVVDGSLVLHD---------RPI 1060

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELN 478
            ++  +  +   L+ +  D   +                +L L L  LT       + +  
Sbjct: 1061 KKVISDMEALGLMKIGSDGETSTY------------DYLLNLPLNGLT--EEKRKQLDTE 1106

Query: 479  SLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVR 535
                + K+ +        L     +E  S   +++  R + +V+G  +   E   + 
Sbjct: 1107 MKETKEKKEVLNSKESKDLWIEDLEEFKSNFIQMEAKRLSELVQGKRNQAYEVFTID 1163


>gi|3152674|gb|AAC17115.1| topoisomerase IV subunit A [Shigella flexneri]
          Length = 79

 Score =  155 bits (392), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/79 (51%), Positives = 55/79 (69%), Gaps = 3/79 (3%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AA 127
           K+ K AR  G+V+GKYHPHG++A Y+ +  MAQ +S R  L++GQGN+G+ D DP   AA
Sbjct: 1   KFKKSARTVGDVLGKYHPHGDSACYEPMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 59

Query: 128 ERYTECRLQKAAHFLLDDL 146
            RYTE RL K +  LL +L
Sbjct: 60  MRYTESRLSKYSELLLSEL 78


>gi|159117354|ref|XP_001708897.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
 gi|30692178|gb|AAP33503.1| topoisomerase II [Giardia intestinalis]
 gi|157437011|gb|EDO81223.1| DNA topoisomerase II [Giardia lamblia ATCC 50803]
          Length = 1491

 Score =  155 bits (391), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 21/264 (7%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            RAIP L DGLKP  R++L+   +  +   K  +K +++SG V  K  YH HG A++   +
Sbjct: 755  RAIPSLMDGLKPGQRKVLYACFKRNL---KTKLKVSQLSGFVSDKAAYH-HGEASLNGTI 810

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  + L+   G FGS    G   +A RY    L   A +L  +     + +
Sbjct: 811  VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQY 870

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG   EP       P VL+NG  GI  G +T IP  +  +++   + +        
Sbjct: 871  KED-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIPQFDPLDMLHS-IRLRIYGKTTR 928

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                 +    +   G +                   + G   +         I +T++P 
Sbjct: 929  REKRTLKPFSNGWKGTMTHEYDKSGKFVR-----WRMTGCFSVVDLK----TIQITDLPI 979

Query: 274  QVNKAAMLEKIAELVREKRIVDIA 297
             V   +  E+I   V+       A
Sbjct: 980  GVWTESYREEIETWVKGNEDAGTA 1003


>gi|60651694|gb|AAX32858.1| GyrA [Riemerella anatipestifer]
          Length = 66

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 53/64 (82%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+  +YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRPVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 YTEC 133
           YTE 
Sbjct: 61  YTEA 64


>gi|254486417|ref|ZP_05099622.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
 gi|214043286|gb|EEB83924.1| DNA gyrase, A subunit [Roseobacter sp. GAI101]
          Length = 152

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 2/134 (1%)

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            + +    IS+ER  E+   E  +LT++EKG GK +SS+D+ +  R G G+ A D  K  
Sbjct: 19  EEVNANATISQERYAEMSAAENLLLTITEKGSGKLSSSHDYPVRGRGGLGVTAMD--KAM 76

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G +VA FPV  +DQI+L + KG  IRVPV  I   SR+  GV +F T K E VVSV  
Sbjct: 77  RGGDIVASFPVELDDQIMLATSKGQSIRVPVQGISFRSRSAGGVKVFDTGKGEVVVSVAW 136

Query: 897 IRESEIVDEAESTE 910
           I +       + TE
Sbjct: 137 IADQGDDAVEDGTE 150



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDS---RDEILSVETCTQENDILLTTKLGQ 704
           ++  T+ G+ + +   D+    R G     +D      +I++      ++ I+L T  GQ
Sbjct: 42  LLTITEKGSGKLSSSHDYPVRGRGGLGVTAMDKAMRGGDIVASFPVELDDQIMLATSKGQ 101

Query: 705 CVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
            +R P+  I  F  R++ GV+     KG+ V+S+A +     D  E
Sbjct: 102 SIRVPVQGI-SFRSRSAGGVKVFDTGKGEVVVSVAWIADQGDDAVE 146


>gi|89243027|gb|ABD64769.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 94

 Score =  154 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 50/102 (49%), Positives = 62/102 (60%), Gaps = 9/102 (8%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A  VIL RAIP + DGLKPV RRIL  +  M    + K  K A ++G+ M  YHPHG+A 
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTEC 133
           I +AL  MA     R  L++ QGNFG++  GDP AA RY E 
Sbjct: 57  ITEALVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIET 94


>gi|60101268|gb|AAX13712.1| GyrA [Riemerella anatipestifer]
          Length = 65

 Score =  154 bits (390), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 51/61 (83%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTE 132
           K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYTE
Sbjct: 4   KSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTE 63

Query: 133 C 133
            
Sbjct: 64  A 64


>gi|308159431|gb|EFO61962.1| DNA topoisomerase II [Giardia lamblia P15]
          Length = 1492

 Score =  154 bits (389), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 23/265 (8%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDAL 97
            RAIP L DGLKP  R++L+   +  +   K  +K +++SG V  K  YH HG A++   +
Sbjct: 756  RAIPSLMDGLKPGQRKVLYACFKRNL---KTKLKVSQLSGFVSDKAAYH-HGEASLNGTI 811

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ +  S  + L+   G FGS    G   +A RY    L   A +L  +     + +
Sbjct: 812  VNMAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQY 871

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
            + + DG   EP       P VL+NG  GI  G +T IP  +  +++   + +        
Sbjct: 872  KED-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIPQFDPLDMLHS-IRLRIYGKTTR 929

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGR-GSIVIRGVSHIEKTSGDREQIVVTEIP 272
            +    +    +   G +             G+     + G   +         I +T++P
Sbjct: 930  NEKKTLKPFSNGWKGTMTHEYD------KNGKFVRWRMTGCFSVVDLK----TIQITDLP 979

Query: 273  YQVNKAAMLEKIAELVREKRIVDIA 297
              V   +  E+I   ++       A
Sbjct: 980  IGVWTESYREEIETWIKGNEDAGTA 1004


>gi|89243025|gb|ABD64768.1| topoisomerase IV ParC subunit [Parachlamydia acanthamoebae]
          Length = 93

 Score =  154 bits (389), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 62/101 (61%), Gaps = 9/101 (8%)

Query: 33  AINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAA 92
           A  VIL RAIP + DGLKPV RRIL  +  M    + K  K A ++G+ M  YHPHG+A 
Sbjct: 1   ASYVILDRAIPHVIDGLKPVQRRILHTLWSMD---DGKLHKVANVAGQTMA-YHPHGDAP 56

Query: 93  IYDALARMAQDWSLRLLLIEGQGNFGSV-DGDPPAAERYTE 132
           I +AL  MA     R  L++ QGNFG++  GDP AA RY E
Sbjct: 57  ITEALVNMA----NRGYLLDQQGNFGNIFTGDPAAAARYIE 93


>gi|630594|pir||S44861 DNA topoisomerase II - Caenorhabditis elegans
          Length = 2434

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 96/496 (19%), Positives = 190/496 (38%), Gaps = 53/496 (10%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            +E+ I+++++E+K        +++Q     +    I    IP L DGLKP  R+IL+ + 
Sbjct: 1938 SENEITNEDDEQKKARMSDGVEDLQR----FESQRIQS--IPSLIDGLKPSQRKILWTL- 1990

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
             +        +K ++++G V  +  YH HG  ++   + RM Q +  S  L L++  G F
Sbjct: 1991 -LNNMDESTEIKVSQLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQF 2048

Query: 118  GSV--DGDPPAAERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPVVLCARY 171
            G+    G+  A+ RY    L      L     DDL +  V+     +G   EP +     
Sbjct: 2049 GTRHEGGNDAASARYIFTALAPTTRLLFPQADDDLLQKNVE-----EGMVVEPTLCPI-V 2102

Query: 172  PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVI 231
            P +L+NG  GI  G +T I   N  +++D  +    +       +      P +      
Sbjct: 2103 PLILINGTEGIGTGWSTKIANRNPIDIID-MIRRKIDSISTEYEI-----PPFYEEFRGK 2156

Query: 232  LGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREK 291
            L         ++G+  ++       E+ +     I + E+P  +  +   EK++++V   
Sbjct: 2157 LEVVTPTKFISSGKIQLI-----RPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVETL 2211

Query: 292  RIVDIADLRDESDRQGYRVVIELKRGASA---DVILNQLYRYTSLQSLFSVNMVALNGYK 348
             +++ ++   E   +     I L R  S+       + L  Y  L++  + N V  +   
Sbjct: 2212 PVLEFSERHTE---KRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNG 2268

Query: 349  --PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-GLAIAVANLDEVVRIIR 405
               E   +  I   F   R ++  +R K    +   +   +   L       +  + I  
Sbjct: 2269 ELKEFGNISEIAAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRS 2328

Query: 406  FSPNPETAR-RELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR--AILELRL 462
               N    + +E+  R    + I      ++  +Y             Q     +LE+ +
Sbjct: 2329 MGRNQLEEKLQEMGFRVDPMATIAKNSKKVNLINYEDFQYLNF-----QANYGYLLEMPV 2383

Query: 463  ARLTGLGRDDIRNELN 478
            +RLT      +    +
Sbjct: 2384 SRLTSDEMKRLEERKS 2399


>gi|313600330|gb|ADR71661.1| topoisomerase IV subunit [Salmonella sp. ES-B43]
          Length = 83

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+  + K+ K AR  G+V+GKYHP G+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPRGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 121 DGDPP--AAERYTECRLQKAAHFL 142
           D DP   AA RYTE RL K +  L
Sbjct: 61  D-DPKSFAAMRYTESRLSKYSELL 83


>gi|254168976|ref|ZP_04875815.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
 gi|197622082|gb|EDY34658.1| DNA gyrase C-terminal domain, beta-propeller [Aciduliprofundum
           boonei T469]
          Length = 153

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 76/211 (36%), Gaps = 58/211 (27%)

Query: 687 VETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA 746
           ++      DI L TK G+ +RF    +RV  GR + GV GI L  G              
Sbjct: 1   MKITHGGEDIFLFTKYGKAIRFSEDDVRVM-GRTARGVIGIKLQDG-------------- 45

Query: 747 DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEK 806
                                                   E     ++ +  ++  V   
Sbjct: 46  ---------------------------------------DEVISSAVESEGPYVFAVLSS 66

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVP 866
           G+GKRT   ++R   R G G+R   +   N    +V      +ND+ +L++  G  IR+ 
Sbjct: 67  GYGKRTPIGEYRRIRRGGMGVRNISI--RNAT--VVKSLLTTENDEALLLTKNGMSIRIK 122

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERI 897
           + ++ +  R  +GV +      + VV+  ++
Sbjct: 123 LRDVSVMGRNARGVKLIKLDDGDEVVNAAKL 153



 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 60/158 (37%), Gaps = 11/158 (6%)

Query: 583 VSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESS 642
                 +  F+  G   +     + +    ARG   +  + L  G+              
Sbjct: 4   THGGEDIFLFTKYGKAIRFSEDDVRVMGRTARG---VIGIKLQDGDE------VISSAVE 54

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETCTQENDILLTTK 701
               YV      G  +R  + ++ +I R G     +      ++     T+ ++ LL TK
Sbjct: 55  SEGPYVFAVLSSGYGKRTPIGEYRRIRRGGMGVRNISIRNATVVKSLLTTENDEALLLTK 114

Query: 702 LGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
            G  +R  +  + V  GRN+ GV+ I L  GD+V++ A
Sbjct: 115 NGMSIRIKLRDVSVM-GRNARGVKLIKLDDGDEVVNAA 151


>gi|302202600|gb|ADL09409.1| DNA topoisomerase II [Omphalotus nidiformis]
          Length = 1557

 Score =  154 bits (388), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 153/398 (38%), Gaps = 38/398 (9%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             +  +  ++ +    + +++   + R+IP + DGLKP  R++++   +  +   KK +K 
Sbjct: 771  RLDEIPYSEFVNKELILFSMADNI-RSIPSIADGLKPDQRKVIWSCFKRNL---KKEIKV 826

Query: 75   ARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAE 128
             ++ G V     YH HG+A++   +  +AQD+  S  L L+   G +G+ D  G   A+ 
Sbjct: 827  IQLVGYVSEHSVYH-HGDASLTQTIVALAQDFVGSNNLNLLVPCGQYGTRDMGGKDHASA 885

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    LQ  +  + +    D +      +    EP       P VL+NG  GI  G +T
Sbjct: 886  RYINTLLQPISRTIFNP-DDDAILTPQTDENHVIEPEFYMPIVPMVLINGAEGIGTGWST 944

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            N+P  N  ++V     +++N +               P      G  G      T +   
Sbjct: 945  NVPGFNPLDIVANIRRLMNNEEQ-------------VPMHPWWRGFKGEIK--QTAKNKY 989

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML-EKIAELVREKRIVDIADLRDESDRQG 307
             + GV        D   + +TE+P          E    LV EK    + + ++    + 
Sbjct: 990  DVTGVVT----KVDDTTVEITELPIHKWTQTFKTELETMLVGEKGEGSVKNYQEHHANEN 1045

Query: 308  YRVVIELKRGASADVILNQL---YRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAF 364
               V+++            L   ++ TS  +  ++     +G   +  +   IL  F A 
Sbjct: 1046 VHFVVQMDAKELVKAEEKGLLEYFKLTSKITTSNMICFDFDGKIKKYESPEAILDEFYAV 1105

Query: 365  REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
            R     +R  +L   A     V   L+     +  +V 
Sbjct: 1106 RLGYYQKRKDHL---ASQLQMVFERLSNQARFVQMIVE 1140


>gi|12642572|gb|AAK00289.1|AF302141_1 ParC [Stenotrophomonas maltophilia]
          Length = 77

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 55/78 (70%), Gaps = 3/78 (3%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERY 130
           K AR  G+V+GKYHPHG++A Y+AL  MAQ +S R  LIEGQGNFGS D DP   AA RY
Sbjct: 1   KSARTVGDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSD-DPKSFAAMRY 59

Query: 131 TECRLQKAAHFLLDDLGK 148
           TE +L   A  LL +LG+
Sbjct: 60  TESKLTPIAEVLLGELGQ 77


>gi|36988567|gb|AAQ87921.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score =  154 bits (388), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 53/76 (69%), Gaps = 3/76 (3%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDPP--AAERYTE 132
           + D DP   AA RYTE
Sbjct: 61  APD-DPKSFAAMRYTE 75


>gi|24020906|gb|AAN40848.1| GyrA [Streptococcus mitis]
          Length = 67

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 54/67 (80%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYT 131
            K ARI+G+VMGKYHPHG+ +IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA+RYT
Sbjct: 1   KKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYT 60

Query: 132 ECRLQKA 138
           E R+ K 
Sbjct: 61  EARMSKI 67


>gi|116282951|gb|ABJ97451.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 69

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/69 (59%), Positives = 51/69 (73%)

Query: 76  RISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           R+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL
Sbjct: 1   RVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARL 60

Query: 136 QKAAHFLLD 144
              A  LL 
Sbjct: 61  TPIAELLLS 69


>gi|2780355|dbj|BAA24278.1| GyrA subunit of Enterobacter cloacae DNA gyrase
          Length = 65

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/65 (61%), Positives = 54/65 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG 60

Query: 123 DPPAA 127
           D  AA
Sbjct: 61  DSAAA 65


>gi|145522376|ref|XP_001447032.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414532|emb|CAK79635.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1272

 Score =  153 bits (387), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 36/374 (9%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
            R+IP L DGLKP  R++LF   +  +   K+ +K  ++ G +     YH HG+ ++   +
Sbjct: 673  RSIPSLMDGLKPGQRKVLFACFKRNL---KQEIKVVQLGGYIAEHSAYH-HGDLSLVSTI 728

Query: 98   ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
              MAQ++  S  + L+  +G FGS  + G   A+ RY    L K   ++  +     + +
Sbjct: 729  IGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTALNKITRYIFPEQDDHLLKY 788

Query: 154  RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
              + DG   EP       P  LVNG  GI  G +T+I  +N  ++V      ++      
Sbjct: 789  LED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYNPIDLVQQIKNRLNGEQFQ- 846

Query: 214  DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                        P         GI      G  + VI+G+    + +   + + + E+P 
Sbjct: 847  ------------PMAPFYRNFDGIIENLPNG--NCVIKGLIDCNEAT---DIVTIRELPI 889

Query: 274  QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
            +       E + + + E+    I DLR+   +      I++  G   D  L     Y  L
Sbjct: 890  KKWTRNYKEWLDKEMAEE-GSQIVDLREYHTKYKIHFEIQMVDGFVQD--LKNPLEYFKL 946

Query: 334  QSLFSVNMVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-G 389
             S  S + + L   N    +   +  I++ F   R E   +R  YL++K      +L   
Sbjct: 947  SSPASCSNMVLFDSNSKIKKYECVQDIMEEFYQVRLEFYHKRKDYLISKLDREVQLLDNK 1006

Query: 390  LAIAVANLDEVVRI 403
            L      + E +++
Sbjct: 1007 LKFIKMVISEEIKL 1020


>gi|308483878|ref|XP_003104140.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
 gi|308258448|gb|EFP02401.1| hypothetical protein CRE_01053 [Caenorhabditis remanei]
          Length = 1165

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 104/463 (22%), Positives = 183/463 (39%), Gaps = 58/463 (12%)

Query: 36   VILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAI 93
            V L R+IP L DGLKP  R+IL+ ++ M        +K ++++G V  +  YH HG  ++
Sbjct: 712  VDLKRSIPSLIDGLKPSQRKILWTLLNMD---ESTEMKVSQLAGAVAHRQSYH-HGEESL 767

Query: 94   YDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLL----DD 145
               + RM Q +  S  L L++  G FG+    G+  A+ RY    L      L     DD
Sbjct: 768  VRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASARYIFTSLASTTRLLFPHADDD 827

Query: 146  LGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
            L +  ++     +G   EP  LC   P +LVNG  GI  G +T I   N  +V+DG    
Sbjct: 828  LYEKRIE-----EGLVVEPRWLCPIIPLILVNGTEGIGTGWSTKIVNRNAIDVIDGIRRK 882

Query: 206  IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG--------SIVIRGVSH-- 255
            ID                       + G   I+  Y   RG          +  G  H  
Sbjct: 883  ID----------------------SVEGEHEIQPYYEDYRGKIEAVTSKKFITTGKIHLS 920

Query: 256  -IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
              E+ +     I ++E+P ++  +   EK++++V    IV+ ++   E  R  +R+ ++ 
Sbjct: 921  RPERKNASTFSIEISELPIEIWTSKYKEKLSKIVENLPIVEFSERHTE-KRVNFRLTVDR 979

Query: 315  KR-GASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEVVVR 371
            K+ G       ++L  +  L+S  + N V  +      E  ++  I   F   R ++  +
Sbjct: 980  KKAGRFLQKTNSELLNFFKLRSSITENRVLFDKNGLLKEYKSISEIASEFFDVRRDLYEK 1039

Query: 372  RTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLI 431
            R K   ++   +   +      +  +     I   S   +     L +    +  +    
Sbjct: 1040 RLKAQKDECEAKLKYVDNQIKFIDLVTNG-TIDLRSMGRDQLESSLEEYGLESDPLSSKT 1098

Query: 432  DLIDDSSYTIGSDGTM-YLSEVQTRAILELRLARLTGLGRDDI 473
                 S Y+   +  +  L+  +   + E R  R T L   + 
Sbjct: 1099 HNAKKSDYSYLLEMPLSRLTSDEMNRLTERRFRRKTDLDAAES 1141


>gi|47419978|gb|AAT27341.1| DNA gyrase A [Campylobacter jejuni]
          Length = 269

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 113/294 (38%), Positives = 177/294 (60%), Gaps = 26/294 (8%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT +
Sbjct: 1   REAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIF 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S +
Sbjct: 106 -----------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   
Sbjct: 155 LLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
           Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G +Y  KV+++P G
Sbjct: 215 YEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG 268



 Score = 67.9 bits (164), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 89/205 (43%), Gaps = 18/205 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 77  IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 127

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 128 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 187

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      + I    + F  N 
Sbjct: 188 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE---SFFTANT 244

Query: 850 NDQIILVSDKGTLIRVPVNEIRIAS 874
           +D ++ V+D+G L  + V +I   S
Sbjct: 245 HDTLMFVTDRGQLYWLKVYKIPEGS 269


>gi|323695898|gb|ADX99573.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 55/64 (85%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+++IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDSSIYEAMVR 60

Query: 100 MAQD 103
           MAQD
Sbjct: 61  MAQD 64


>gi|224106109|ref|XP_002314046.1| predicted protein [Populus trichocarpa]
 gi|222850454|gb|EEE88001.1| predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 130/355 (36%), Gaps = 38/355 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYD 95
            L R+IP + DGLKP  R+ILF   +          K ++ SG V     YH HG  ++  
Sbjct: 694  LQRSIPSMVDGLKPGQRKILFCSFKRNFVKEA---KVSQFSGYVSEHSAYH-HGEQSLAG 749

Query: 96   ALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
             +  MAQD+  S  + L++  G FG  SV G   A+ RY   +L     FL        +
Sbjct: 750  TIIGMAQDFVGSNNINLLQPNGQFGTRSVGGKDHASARYIYTQLSPITRFLFPKDDDGLL 809

Query: 152  DFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
            D+    DG   EP   +    P VLVNG  GI  G +T IP +N  +VV     +++   
Sbjct: 810  DYLDE-DGQTIEPTWYMPI-IPTVLVNGCEGIGTGWSTFIPNYNPRDVVANIRRLLNGEM 867

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
            ++          P  P      G      +   G  S  + GV +      +   + +TE
Sbjct: 868  ME----------PMNPWYRGFKGTIEKGASKEGGCSSYTVNGVIN----EVNETTLRITE 913

Query: 271  IPYQVNKAAMLEKIAELV--------REKRIVDIADLRDESDRQGYRVVIELKRGASADV 322
            +P +         +  +            +   + D R   D       ++L        
Sbjct: 914  LPIRRWTDDYKAFLNSVTEGTRDENGNLPKDPFVKDFRKYGDDAAVHFEVQLSEENMLVA 973

Query: 323  ILNQLYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFREEVVVRRTK 374
                L +   L +  S + + L        +      IL+ F   R E    R K
Sbjct: 974  KQEGLLKKFKLTTTISTSNMHLFDSAGVIKKYDNPEQILENFFHLRLEYYETRKK 1028


>gi|2598663|dbj|BAA23307.1| CfgyrA [Citrobacter freundii]
          Length = 65

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 53/65 (81%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGSVDG
Sbjct: 1   LGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG 60

Query: 123 DPPAA 127
           D  AA
Sbjct: 61  DSAAA 65


>gi|323695904|gb|ADX99576.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 67

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/67 (62%), Positives = 55/67 (82%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVH RIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHCRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQDWSL 106
           MAQD+S 
Sbjct: 61  MAQDFSY 67


>gi|60651682|gb|AAX32852.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 53/61 (86%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG++++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|324507090|gb|ADY43013.1| DNA topoisomerase 2 [Ascaris suum]
          Length = 625

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 100/516 (19%), Positives = 195/516 (37%), Gaps = 41/516 (7%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQM 63
              ++D  + + +   + ++ +    + ++   I  R++P+  DGLKP  R++L+ +MQ 
Sbjct: 132 TSENTDSRKRENLNQRTYSEFINEELIDFSRLDIR-RSVPNAIDGLKPSQRKVLYTLMQ- 189

Query: 64  GVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS 119
              + K  V+  +++G V     YH HG   + + + R+AQD+  S  L L++  G FG+
Sbjct: 190 --RFEKSEVRVVQLAGAVAHSCAYH-HGEEPLINTIVRLAQDFVGSNNLNLLQPIGQFGT 246

Query: 120 --VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVN 177
             + G+  A+ RY    L     ++        + +    D    EP   C   P VLVN
Sbjct: 247 RLIGGEDCASARYIYTALSPLVRWIFPRADDSVLSYIEE-DNMRIEPQWFCPIIPMVLVN 305

Query: 178 GGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGI 237
           G  GI  G AT +  +N  +V+     +ID               P           TG 
Sbjct: 306 GAEGIGTGWATKVLCYNPKQVIRNVQRMIDGQ-------------PLQKMVPFYRNFTGT 352

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI-AELVREKRIVDI 296
               + GR  I         + +    Q  +TE+P  V      EK+   L +   I   
Sbjct: 353 IKEASEGRFHISGTVTLRPSRKNAHFIQAEITELPVGVWTQRYKEKVLDVLAKSGIISGY 412

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILN-----QLYRYTSLQSLFSVNMVAL---NGYK 348
            +L  E+     R ++EL +G+      N      L++   L ++   + + L   N   
Sbjct: 413 KELHTENA---VRFLLELPKGSGIWSSANGGRKHALHKTLKLDTVLGTSSMVLFDENNSL 469

Query: 349 PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA-IAVANLDEVVRIIRFS 407
                +  I + F   R +  + R  + +     +            A L++ + I   S
Sbjct: 470 RRFTRIEEIFELFFEVRRQKYIERRDHQIGVLDAKLRFYENQCRFVEAVLNKEITIEGKS 529

Query: 408 PNPETA---RRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLAR 464
                +   +R        A + +D  +L       +     + LS  + ++++E R A+
Sbjct: 530 RTDIESTLRQRHFEPNPLKAPNHEDGNELNKSEFSYLLDMPIIRLSNEEVKSLIESRDAK 589

Query: 465 LTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGI 500
           +T +     ++  +    +++     L    +    
Sbjct: 590 VTEMNMLKGKDWKDMWHEDLRNLTVQLEKDEKKRER 625


>gi|313611846|gb|EFR86317.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-208]
          Length = 169

 Score =  152 bits (384), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 56/191 (29%)

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGD 768
           P   IRV  GR + GVRGI L                                       
Sbjct: 1   PEENIRVM-GRTAAGVRGIRLR-------------------------------------- 21

Query: 769 TEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIR 828
                             E    E+   ++ +L V+EKG+GK+T +  + + NR G G++
Sbjct: 22  ---------------EDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVK 66

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
              +++ N  G LVA+  V   + ++L++  G LIR  +  +    R+  GV +    +D
Sbjct: 67  TVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIETVSQTGRSAMGVKLIRLDED 124

Query: 889 ERVVSVERIRE 899
           E+V +V ++ +
Sbjct: 125 EKVATVAKVPK 135



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 65/138 (47%), Gaps = 6/138 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLT 699
           ++  V+  T+ G  ++   S +  +   G + +K     +    +++++T T E D++L 
Sbjct: 34  DDEKVLVVTEKGYGKQTPASQYP-LRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLM 92

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  G  +RF I  +    GR+++GV+ I L + ++V ++A V   + + +      + + 
Sbjct: 93  TVSGVLIRFEIETV-SQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDEVELEEEIDETLI 151

Query: 760 AQRRLISGDTEEITSLKN 777
            Q    S +    + ++ 
Sbjct: 152 TQVPDESFEDAPGSDIEE 169



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
             IR+  R   GV      +D+ V+ +E + + E
Sbjct: 3   ENIRVMGRTAAGVRGIRLREDDEVIGMEVLEDDE 36


>gi|47420006|gb|AAT27355.1| DNA gyrase A [Campylobacter fetus]
          Length = 267

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 116/292 (39%), Positives = 178/292 (60%), Gaps = 26/292 (8%)

Query: 297 ADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
           +++RDESDR G R+VIELKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ 
Sbjct: 1   SEVRDESDRDGIRLVIELKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLE 60

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           +LK F+  R+ V++RRT + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  
Sbjct: 61  LLKLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDG 120

Query: 417 LMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNE 476
           LM +                            LSE+Q+ AIL++RL++LTGL R+ +  E
Sbjct: 121 LMAK--------------------------FGLSELQSNAILDMRLSKLTGLEREKLEAE 154

Query: 477 LNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVRE 536
           L  +   I++   IL S + +  II+ ELL +K +   PR T IV+   D++ ED I  E
Sbjct: 155 LKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNE 214

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           +MVVT++H GY+KRVP   Y  Q+RGGKG+  V   D+DF+   F   +H +
Sbjct: 215 NMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 266



 Score = 47.9 bits (112), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D ++++   + + +   + + G   +F +S ++      S  +  + L+     
Sbjct: 96  IALDNIDAVINLIKTSADTN---SARDGLMAKFGLSELQ------SNAILDMRLSKLTGL 146

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +  +L      D  +     +    R    + +        + +  +  +  
Sbjct: 147 EREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDID 206

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      +
Sbjct: 207 VEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDD 253


>gi|37731960|gb|AAO23340.1| type II topoisomerase [Strigomonas culicis]
          Length = 1230

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/524 (17%), Positives = 182/524 (34%), Gaps = 56/524 (10%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            RAI    DGLKP  R+IL+ + + G   +    K A++SG +  +  +H HG  ++ + +
Sbjct: 683  RAIAHSVDGLKPSQRKILWALFKRGKAESA---KVAQLSGYISEVSSFH-HGEMSLQETI 738

Query: 98   ARMAQDWS--LRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             +MAQ+++    + L+  +G FGS    G+  AA RY   +L + A  L  +  +  +D+
Sbjct: 739  VKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTKLSRFARVLFPEDDEPLLDY 798

Query: 154  R--------PNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
                     PN+         +    P +L NG  GI  G A+NIP+++  +V    V  
Sbjct: 799  TEEEGTTTEPNH--------YVPI-IPMLLCNGSVGIGFGFASNIPSYHPLDVS-AVVRS 848

Query: 206  IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
            + N +     +  ++       G V  G  G            +  G     K +     
Sbjct: 849  MINGETAKQVVKRLVPWAVGFQGTVRRGPEG----------EFIAVGKYSAYKNNY---- 894

Query: 266  IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILN 325
            I V+E+P+  +  A    I+ L     +  IAD    +      + I+L     +    +
Sbjct: 895  IHVSELPWTTSIEAFRGHISNLANMDVVQRIADYSGAN-----HIDIDLIVREGSVTTWS 949

Query: 326  QLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAH 385
            ++    +L     +N    +           +        +  +    K    +     H
Sbjct: 950  EVEADLALSQKIYINGTVFSPSGTLAPLEGDLSPILQRHYDRRLNLYKKRRARQLGLLEH 1009

Query: 386  VLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDG 445
             L  L         V+   +   +  TA  E +Q+  +       +  +D     I    
Sbjct: 1010 DLACLESTRKF---VMHFRQGKIDFMTATDETLQKVCDRLH----LQKVDAKYDYILKKP 1062

Query: 446  TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQEL 505
              + +   T  + +        +              E+ +   +     R+L       
Sbjct: 1063 ITFFTRTNTTKLDDDIKKLQDSIEEMKKTTPTKMWLRELDQFDKLFEEYERVLNNSI--Q 1120

Query: 506  LSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVK 549
              ++D++             ++E E     ++  + +    +V 
Sbjct: 1121 KEMRDKMPGKGELVRSLQAPEIELEVLKGVKERPMRIQAYQHVP 1164


>gi|315307938|gb|ADU04373.1| ParC [Vibrio cholerae O1 biovar El Tor]
          Length = 73

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 3/74 (4%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  + KY K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DP 59

Query: 125 P--AAERYTECRLQ 136
              AA RYTE +L 
Sbjct: 60  KSFAAMRYTEAKLS 73


>gi|3023910|sp|P72065|GYRA_MYCXE RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mxe
           gyrA intein
 gi|1907313|gb|AAB81424.1| gyrase subunit A precursor [Mycobacterium xenopi]
          Length = 327

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 46/65 (70%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + K AR   E MG YHPHG+A+IYD L RMAQ WS+R  L++GQGNFGS   DPP
Sbjct: 1   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPP 60

Query: 126 AAERY 130
           AA RY
Sbjct: 61  AAMRY 65



 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 47/64 (73%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE  L   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 264 TEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 323

Query: 191 PTHN 194
           P HN
Sbjct: 324 PPHN 327


>gi|402872|gb|AAA21849.1| DNA gyrase subunit A [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 195

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 56/216 (25%)

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
           + +++ TK GQ V FPIS  R   GR + GV+GI+LA+GD+VIS+  +   +        
Sbjct: 1   DLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITLAEGDEVISLLWLKAGNK------- 52

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                         ILT++EKG+GKR+ 
Sbjct: 53  ----------------------------------------------ILTITEKGYGKRSE 66

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
              +R++ R  KG+R  +V+  ++IGA V V  V D+  +I+ S  G +IR+   +IR+ 
Sbjct: 67  PGSYRVTRRGSKGVRNLNVT--DKIGAAVFVESVADDYDLIITSKDGQVIRIKAADIRLT 124

Query: 874 SRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            R  +GV   +    + V     +   E +++  + 
Sbjct: 125 GRNAQGVKAITLRDGDVVKDATALPSVEDIEQDSAD 160



 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 80/205 (39%), Gaps = 13/205 (6%)

Query: 587 TSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNL 646
             ++  +  G       + +       RG   +  ++L +G+ + +++            
Sbjct: 1   DLLMIATKNGQA---VTFPISCFRAMGRGTHGVKGITLAEGDEVISLL------WLKAGN 51

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI---LSVETCTQENDILLTTKLG 703
            ++  T+ G  +R++   +    R  K    L+  D+I   + VE+   + D+++T+K G
Sbjct: 52  KILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDG 111

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           Q +R   + IR   GRN+ GV+ I+L  GD V     +   +    +     +     + 
Sbjct: 112 QVIRIKAADIR-LTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQDSADAKETFDKVKG 170

Query: 764 LISGDTEEITSLKNDSSVEGNISEE 788
           +   D   +        +    +EE
Sbjct: 171 VEVDDDSVVKDDAEKQEIGPTETEE 195


>gi|323694737|ref|ZP_08108895.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
 gi|323501174|gb|EGB17078.1| DNA gyrase subunit A [Clostridium symbiosum WAL-14673]
          Length = 412

 Score =  151 bits (382), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 106/395 (26%), Positives = 180/395 (45%), Gaps = 23/395 (5%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           M+A+ G +PE  TL GILK ++ F+ E   R+   LL K  ++  +  GL  A   +D +
Sbjct: 1   MLAIAGGRPETLTLKGILKNYLDFQYENNTRKYNVLLEKELEKKEIREGLIKACDVIDLI 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           + I+R S N + A+  LM+   + S+I       D+ +        +  +E Q  AILE+
Sbjct: 61  IAILRGSKNLKDAKACLME--GDISNIHFKTPGFDEDARK------LRFTEKQASAILEM 112

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           RL +L GL    +  E      +IKE   ILSS+  +  +IK++L  +K E  TPRRT I
Sbjct: 113 RLYKLIGLEILALEKEYKETLRKIKEYEKILSSKLTMDDVIKKDLEEIKTEFATPRRTLI 172

Query: 521 VEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
            +G   + DE  +   ++V  +   GY K V  + Y   +             E     +
Sbjct: 173 EDGKEAVYDETAVEIREVVFVMDKFGYGKLVDRATYDRNQET----------IEGENPHV 222

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
                   +  F+  G +++ K   +P G  + +G  + N+   +  +     +    + 
Sbjct: 223 IPCLNTDKICLFTDTGLLHQVKASDIPFGKMRDKGTPVDNLCKFDGTKERPIFII---NA 279

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
           S+     ++FATK   V+     +F   N     A KL   D ++S++      + +L T
Sbjct: 280 SALVGRRLLFATKEAMVKLVPGEEFET-NNRMVAATKLQDGDMVVSIQLTDGRTEAVLQT 338

Query: 701 KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
             G  +RF +  I     +NS GVRGI L +G+++
Sbjct: 339 TNGVFLRFDLEEISTLK-KNSKGVRGIKLGRGEEL 372



 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  +++   K     +F  +NR          +K+ +   +V++   +   + +L +  
Sbjct: 287 LLFATKEAMVKLVPGEEFETNNR------MVAATKLQDGDMVVSIQLTDGRTEAVLQTTN 340

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           G  +R  + EI    + +KGV      + E +
Sbjct: 341 GVFLRFDLEEISTLKKNSKGVRGIKLGRGEEL 372


>gi|551907|gb|AAA91334.1| topoisomerase II subunit A [Mycoplasma gallisepticum]
          Length = 86

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          ++K I    + D M  S+  YA  +I  RA+PD+RDGLKPV RR+L+GM  +G+ +NK Y
Sbjct: 2  DKKKIFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSY 61

Query: 72 VKCARISGEVMGKYHPHGNAAIYDA 96
           K A   GEV+GK+HPHG+++IY+A
Sbjct: 62 RKSAATVGEVIGKFHPHGDSSIYEA 86


>gi|36988497|gb|AAQ87916.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 75

 Score =  151 bits (381), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDPP--AAERYTE 132
           + D DP   AA RYTE
Sbjct: 61  APD-DPKSFAAMRYTE 75


>gi|323695902|gb|ADX99575.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 66

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 3   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 62

Query: 100 MAQD 103
           MAQD
Sbjct: 63  MAQD 66


>gi|323695900|gb|ADX99574.1| DNA gyrase subunit A [Staphylococcus pseudintermedius]
          Length = 64

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 42/64 (65%), Positives = 54/64 (84%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALAR 99
           RA+PD+RDGLKPVHRRIL+G+ + G+  +K Y K ARI G+VMGKYHPHG+ +IY+A+ R
Sbjct: 1   RALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVR 60

Query: 100 MAQD 103
           MAQD
Sbjct: 61  MAQD 64


>gi|60101270|gb|AAX13713.1| GyrA [Riemerella anatipestifer]
 gi|60651672|gb|AAX32847.1| GyrA [Riemerella anatipestifer]
          Length = 61

 Score =  151 bits (380), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 71  YVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           Y+K ARI G+V+GKYHPHG++++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 1   YLKSARIVGDVLGKYHPHGDSSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 60


>gi|15078758|ref|NP_149508.1| 045L [Invertebrate iridescent virus 6]
 gi|82039172|sp|Q9QSK1|TOP2_IIV6 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|5725647|gb|AAD48151.1|AF083915_5 045L [Invertebrate iridescent virus 6]
          Length = 1132

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 165/436 (37%), Gaps = 47/436 (10%)

Query: 9    DEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGMMQMGVE 66
            D +    I  ++I+  +    + ++   I    R++P L DGLK   R+++FG+ Q    
Sbjct: 681  DLDSPNKILQLNISTFINEELIKFS---IEDCKRSLPHLIDGLKESQRKVIFGLKQWN-- 735

Query: 67   WNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV-- 120
              K  +K A++   V  K  Y  HG   ++D + +MAQ +  +  + L+E  G FG+   
Sbjct: 736  -GKNNIKVAQLGAFVAQKTDY-KHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLS 793

Query: 121  DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY--DGSFQEPVVLCARYPNVLVNG 178
             G   A+ RY         + +         D   NY  DG   EPV      P + +NG
Sbjct: 794  GGKDAASPRYIFVNQPPILNKIFRPED----DPILNYTLDG---EPVFYAPVIPLICING 846

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIK 238
              G+  G + NIP  N  E++DG    I+  +     + +        TG +    +G  
Sbjct: 847  SVGVGTGFSCNIPMFNPSEIIDGLKQWINMREQGEKYVFKYKPWYKGFTGKIEKNGSGRY 906

Query: 239  NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             +Y          G    E ++    Q  V+E+P  +      E   +          ++
Sbjct: 907  ISY----------GTLSNEASNNGMYQYTVSELPINMWTDKFKEMCDQYRE-------SN 949

Query: 299  LRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIG 356
            L    D       +  K  +  ++ +  L   + + +    NMV  +      +  TL G
Sbjct: 950  LIKTCDNYSEVTTVNFKISSEHELTIENLKLRSYIHTS---NMVMFDHEGKIHKYETLNG 1006

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLV-GLAIAVANLDEVVRIIRFSPNPETARR 415
            I++ F   R ++  +R +Y+L K      +           +++ ++I+         + 
Sbjct: 1007 IMQRFCKERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKILLQEDEVVHQQL 1066

Query: 416  ELMQRSWNASDIKDLI 431
              M    +     D +
Sbjct: 1067 LDMNYYKDDEGEFDYL 1082


>gi|166156947|gb|ABY83102.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156949|gb|ABY83103.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQG 60

Query: 116 NFGSVDGDPPAAERY 130
           NFGS+DGD  AA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|4566360|gb|AAD23314.1| topoisomerase IV subunit A [Streptococcus oralis ATCC 35037]
 gi|4566362|gb|AAD23315.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566368|gb|AAD23318.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566380|gb|AAD23324.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 58/77 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|2501245|sp|Q49467|GYRA_MYCGO RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mgo
           gyrA intein
 gi|1122292|emb|CAA92432.1| DNA gyrase subunit A [Mycobacterium gordonae]
          Length = 550

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 2   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 61

Query: 126 AAERY 130
           AA RY
Sbjct: 62  AAMRY 66



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 487 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 546

Query: 191 PTHN 194
           P HN
Sbjct: 547 PPHN 550


>gi|2501244|sp|Q49166|GYRA_MYCFV RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mfl
           gyrA intein
 gi|1122290|emb|CAA92433.1| DNA gyrase subunit A [Mycobacterium flavescens]
          Length = 554

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 5   RPDRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 64

Query: 126 AAERY 130
           AA RY
Sbjct: 65  AAMRY 69



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 491 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 550

Query: 191 PTHN 194
           P HN
Sbjct: 551 PPHN 554


>gi|298712279|emb|CBJ26730.1| DNA topoisomerase II [Ectocarpus siliculosus]
          Length = 1809

 Score =  150 bits (379), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/407 (21%), Positives = 156/407 (38%), Gaps = 57/407 (14%)

Query: 15   GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKC 74
             + SV+    +    + +++     R+IP L DG KP  R++LF   +  +   KK +K 
Sbjct: 686  NVESVTYESFINKELILFSMEDNK-RSIPCLVDGFKPSQRKVLFSCFKRNL---KKEIKV 741

Query: 75   ARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAE 128
             +++G V     YH HG  ++   +  MAQ++  S  L L+   G FG+  + G   A+ 
Sbjct: 742  VQLAGYVSEHSAYH-HGETSLNGTITAMAQNFTGSNNLNLLTPGGQFGTRLMGGKDAASP 800

Query: 129  RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMAT 188
            RY    LQKAA  +        + +  + DG   EP       P +LVNG  GI  G ++
Sbjct: 801  RYIFTALQKAARAVFHPDDDALLTYLDD-DGLSIEPEFYMPIIPLILVNGSDGIGTGWSS 859

Query: 189  NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSI 248
            N+P ++  +V++     I                   P      G    K       GS 
Sbjct: 860  NVPNYSPHDVIENLKRRIKGDKFVEMQ----------PWYKGFAGSIEAKVGKKGFEGSY 909

Query: 249  VIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL---VREKRIVD---------- 295
             +RG+++      D   + +TE+P +       + +  L     + +  D          
Sbjct: 910  TVRGIAN----RIDDTTVEITELPVRKWTQDYKQFLESLLPGAEDAKSKDAKGNGKGKGK 965

Query: 296  --------------IADLRDESDRQGYRVVIELKR-GASADVILNQLYRYTSLQSLFSVN 340
                          I D ++          + +      A    + LY++  L+S  S N
Sbjct: 966  GKGAADKDKSPTRCIKDFKENHTDTTVHFTVTMSMEDLDALEKGDGLYKFFKLESSVSTN 1025

Query: 341  MVAL---NGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             + L   +G+     +   I++ F+  R E   RR   LL+K +   
Sbjct: 1026 NMVLFDQDGHLERYESPQHIMEEFITLRSEFYGRRKTSLLSKLQSEW 1072


>gi|114228539|gb|ABI58274.1| DNA topoisomerase IV subunit A [Shigella sonnei]
          Length = 77

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 3/76 (3%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K  R  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP  
Sbjct: 2   ASAKFKKSCRTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKS 60

Query: 126 -AAERYTECRLQKAAH 140
            AA RYTE RL K + 
Sbjct: 61  FAAMRYTESRLSKYSE 76


>gi|4566372|gb|AAD23320.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566378|gb|AAD23323.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  149 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 43/77 (55%), Positives = 58/77 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+Q+W  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|315613998|gb|ADU52599.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614000|gb|ADU52600.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614002|gb|ADU52601.1| DNA gyrase subunit A [Neisseria meningitidis]
 gi|315614004|gb|ADU52602.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 68

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 53/67 (79%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YD + RMAQ++++R +LI+GQGNFGSVDG   AA R
Sbjct: 2   AYKKSARIVGDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMR 61

Query: 130 YTECRLQ 136
           YTE R+ 
Sbjct: 62  YTEIRMA 68


>gi|309800472|ref|ZP_07694627.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
 gi|308115891|gb|EFO53412.1| DNA gyrase subunit A [Streptococcus infantis SK1302]
          Length = 144

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 79/194 (40%), Gaps = 55/194 (28%)

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
             R + GV+G++L +GD V+   ++                                   
Sbjct: 1   MSRIATGVKGVNLREGDAVVGARVITD--------------------------------- 27

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
                               +  +L ++EKG+GKRT + ++    R+GKG++  +V++ N
Sbjct: 28  --------------------QDEVLIITEKGYGKRTVATEYPTKGRAGKGMKTANVTEKN 67

Query: 837 EIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
             G L  +  V  ++ +++++D G +IR  V  I    R+T GV +    +D ++V+   
Sbjct: 68  --GPLAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTS 125

Query: 897 IRESEIVDEAESTE 910
           +  +E  +     E
Sbjct: 126 VAAAEKEEVGAEQE 139



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 2/124 (1%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-AKGDQ 734
           + L   D ++     T ++++L+ T+ G   R   +      GR   G++  ++  K   
Sbjct: 11  VNLREGDAVVGARVITDQDEVLIITEKGYGKRTVATEY-PTKGRAGKGMKTANVTEKNGP 69

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +  +  V   +         +   +    +       +         +  I         
Sbjct: 70  LAGLLTVKGDEDLMIITDTGVMIRTNVANISQTGRSTMGVKVMRLDQDAKIVTFTSVAAA 129

Query: 795 LKEQ 798
            KE+
Sbjct: 130 EKEE 133


>gi|94471631|gb|ABF21082.1| DNA gyrase subunit A [Spiroplasma culicicola]
          Length = 86

 Score =  149 bits (377), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/82 (48%), Positives = 57/82 (69%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          SD      I  + I +E++  +L Y+++VI+ RA+PDLRDGLKPVHRRI++ M  + +  
Sbjct: 5  SDNLGLGKILEIDIKNEVEKDFLEYSMSVIVSRALPDLRDGLKPVHRRIIYAMNDLKITS 64

Query: 68 NKKYVKCARISGEVMGKYHPHG 89
          +  + K ARI GEV+GKYHPHG
Sbjct: 65 DTPHKKSARIVGEVIGKYHPHG 86


>gi|60651676|gb|AAX32849.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|36988539|gb|AAQ87919.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 74

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 3/75 (4%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDGDPP--AAERYTE 132
            D DP   AA RYTE
Sbjct: 61  PD-DPKSFAAMRYTE 74


>gi|60651680|gb|AAX32851.1| GyrA [Riemerella anatipestifer]
 gi|60651698|gb|AAX32860.1| GyrA [Riemerella anatipestifer]
 gi|60651700|gb|AAX32861.1| GyrA [Riemerella anatipestifer]
 gi|60651702|gb|AAX32862.1| GyrA [Riemerella anatipestifer]
 gi|60651704|gb|AAX32863.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/61 (68%), Positives = 52/61 (85%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|238592069|ref|XP_002392796.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
 gi|215459345|gb|EEB93726.1| hypothetical protein MPER_07581 [Moniliophthora perniciosa FA553]
          Length = 321

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 127/314 (40%), Gaps = 37/314 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  ++ +    + +++   + R+IP + DGLKP  R++++G  +      KK +
Sbjct: 29  DHRIEEIPYSEFINKELILFSMADNV-RSIPSVADGLKPGQRKVIWGCFKRNF---KKEI 84

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K  ++ G V  K  YH HG  ++   +  +AQD+  S  + L+   G +G+ D  G   A
Sbjct: 85  KVMQLVGYVSEKAVYH-HGEQSLMMTIVNLAQDFVGSNNINLLMPNGQYGTRDQGGKDHA 143

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGS-FQEPV-VLCARYPNVLVNGGGGIAV 184
           + RY        A  +        V   P  D +   EP   +    P VL+NG  GI  
Sbjct: 144 SARYINTLPSLMARTIFHQDDD--VLLTPQKDENHIIEPEWYMPV-LPMVLINGAEGIGT 200

Query: 185 GMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATG 244
           G +TNIP +N  ++VD    +++  ++              P      G  G        
Sbjct: 201 GWSTNIPCYNPRDIVDNLKRLMNGEEV-------------VPMHPWWRGFKGEVKF--VS 245

Query: 245 RGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAML-EKIAELVREKRIVD-IADLRDE 302
           +    + G++       D   + +TE+P          E  A +V EK     I + ++ 
Sbjct: 246 KNKYDVTGIAT----KIDDSTVEITELPIHKWTQNFKAELEAMMVGEKGAEGSIKNYQEH 301

Query: 303 SDRQGYRVVIELKR 316
              Q    VI++  
Sbjct: 302 HANQDVHFVIQMDP 315


>gi|327409604|ref|YP_004347024.1| DNA topoisomerase II [Lausannevirus]
 gi|326784778|gb|AEA06912.1| DNA topoisomerase II [Lausannevirus]
          Length = 1090

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 137/355 (38%), Gaps = 41/355 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R+IP + DGLKP  R++L+      V    K  K  R++G+V  +  YH HG  ++   +
Sbjct: 667 RSIPSVYDGLKPSQRKVLYACFASNVIGPSKTEKVERLAGKVASIAGYH-HGEVSLSGTI 725

Query: 98  ARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
             MAQ++      + L+   G++G+    G   +A RY           L      D  +
Sbjct: 726 VGMAQNFVGSGNNIPLLYPDGSYGTRLRGGKDHSAARYLSTYALPLTRILFPAEDDDLYE 785

Query: 153 FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
                D    EPV  L    P +LVNG  GI  G +T IP+HN  ++ +     +DN + 
Sbjct: 786 RVLE-DNELNEPVNYLPI-LPMILVNGACGIGTGHSTEIPSHNPLDICEWIRCWLDNKEK 843

Query: 212 DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                                G  G       G+G    R    +EK S ++ +I  T +
Sbjct: 844 PYLVPW-------------WRGFKGKVEV-EDGKG----RTFGILEKLSKEKWRISETPV 885

Query: 272 PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
                   M   +  L + K I    D   + +      VI   +  +  +   +L +  
Sbjct: 886 GLWTYDCKMH--LETLEKNKHIKSFEDKYTDEEAA---FVITTTKDFTPTMSNLKLSKAF 940

Query: 332 SLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           SL+     NM AL+      +  +   IL+ +   R E+  +R + LLN      
Sbjct: 941 SLK-----NMTALDEDDVPVKFRSTEEILEKYCDARLELYQKRKEKLLNDLSQEI 990


>gi|315307940|gb|ADU04374.1| ParC [Vibrio fluvialis]
 gi|315307942|gb|ADU04375.1| ParC [Vibrio fluvialis]
          Length = 73

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDP 124
           +  + KY K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP
Sbjct: 1   LSASAKYKKSARTVGDVLGKYHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DP 59

Query: 125 P--AAERYTECRLQ 136
              AA RYTE +L 
Sbjct: 60  KSFAAMRYTEAKLS 73


>gi|258611538|ref|ZP_05711544.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
 gi|258601051|gb|EEW14376.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL N3-165]
          Length = 334

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 155/385 (40%), Gaps = 64/385 (16%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + E  +  ED++V+V+  GYVKR     Y A          + M++ D    +  +++  
Sbjct: 11  DTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLD 65

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNL 646
           S+L F+S G      V  LP    +  G  + ++   L+ GE I + +            
Sbjct: 66  SLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEK 122

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +F TK+G  +++ ++++     S   +A+KL   DE+LSV       DI L TK G  
Sbjct: 123 RFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGTEDIFLATKNGYG 182

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R+ I+ I     R + GV+ I+L + D VI   ++                        
Sbjct: 183 LRYSITEIPESGARTA-GVKAINLKQDDIVIGGIVL------------------------ 217

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                      +  +++ IL  +++G  K+  + +F   +R+ +
Sbjct: 218 ---------------------------MLNEQKHILLATQRGSLKQMKASEFEPISRAKR 250

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+      K N     + +   ++ND + + ++   ++ + V  +RI  R + G  +   
Sbjct: 251 GLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDE 309

Query: 886 AKDERVVSVERIRESEIVDEAESTE 910
             +    S+  +   EI D +++ E
Sbjct: 310 TMEGEPTSI-WLAIPEIKDTSDAKE 333



 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E    +   + L   E  I++V+++G+ KRTS   +  SN +     A       E  
Sbjct: 2   QAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAEL---AMK-----EAD 53

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
             + +  +N  D ++L + KG  I  PV+E+ 
Sbjct: 54  HAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 85


>gi|60651696|gb|AAX32859.1| GyrA [Riemerella anatipestifer]
          Length = 62

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 41/61 (67%), Positives = 51/61 (83%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
           KY+K ARI G+V+GKYHPHG+ ++Y A+ RMAQ WSLR   ++GQGNFGS+DGDPPAA R
Sbjct: 1   KYLKSARIVGDVLGKYHPHGDNSVYGAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMR 60

Query: 130 Y 130
           Y
Sbjct: 61  Y 61


>gi|262411034|gb|ACY66883.1| GyrA [Salmonella enterica]
          Length = 64

 Score =  149 bits (375), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 45  LRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDW 104
           +RDGLKPVHRR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD++ RMAQ +
Sbjct: 1   VRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPF 60

Query: 105 SLRL 108
           SLR 
Sbjct: 61  SLRY 64


>gi|148645152|gb|ABR01100.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 53/184 (28%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  D++++V       D+LL +K G+C+RF    +R   GR S GVRG++L   D
Sbjct: 2   IAVNLDEGDKLITVALTDGRQDVLLASKHGKCIRFKEEDVRTV-GRVSRGVRGMTLEDDD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI M I+     D                                              
Sbjct: 61  VVIGMTILNENFTDST-------------------------------------------- 76

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 I TV+E G+GKRT   ++R  +R GKG+     ++ N  G +V +  V+D + +
Sbjct: 77  ------IFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERN--GCVVDIKQVSDENDL 128

Query: 854 ILVS 857
           +L++
Sbjct: 129 MLIT 132



 Score = 62.9 bits (151), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I A ++ + ++   L+ V   +    ++L S  G  IR    ++R   R ++GV   +  
Sbjct: 1   IIAVNLDEGDK---LITVALTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTLE 57

Query: 887 KDERVVSVERIRES 900
            D+ V+ +  + E+
Sbjct: 58  DDDVVIGMTILNEN 71



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--- 849
           L    Q +L  S+ G   R    D R   R  +G+R   +    +   ++ +  +N+   
Sbjct: 17  LTDGRQDVLLASKHGKCIRFKEEDVRTVGRVSRGVRGMTL---EDDDVVIGMTILNENFT 73

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEI 902
           +  I  V++ G   R  ++E R  SR  KGV+   T + +  VV ++++ +   
Sbjct: 74  DSTIFTVTENGYGKRTEISEYRCQSRGGKGVITIKTTERNGCVVDIKQVSDEND 127


>gi|47094489|ref|ZP_00232164.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|47017134|gb|EAL07992.1| DNA topoisomerase IV, A subunit [Listeria monocytogenes str. 4b
           H7858]
          Length = 334

 Score =  148 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 153/385 (39%), Gaps = 68/385 (17%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           + E  +  ED++V+V+  GYVKR     Y A          + M++ D    +  +++  
Sbjct: 11  DTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLD 65

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINIL-SLNQGERITTIMPFPEDESSWNNL 646
           S+L F+S G      V  LP    +  G  + ++   L+ GE I + +            
Sbjct: 66  SLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFT---EEK 122

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQENDILLTTKLGQC 705
             +F TK+G  +++ ++++     S   +A+KL   DE+L+V       DI L TK G  
Sbjct: 123 RFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYG 182

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLI 765
           +R+ I+ I     R + GV+ I+L + D VI   ++                        
Sbjct: 183 LRYSITEIPESGARTA-GVKAINLKQDDIVIGGIVL------------------------ 217

Query: 766 SGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGK 825
                                      +  +++ IL  +++G  K+  + +F   +R+ +
Sbjct: 218 ---------------------------MPNEQKHILLATQRGSLKQMKASEFEPISRAKR 250

Query: 826 GIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST 885
           G+      K N     + +   ++ND + + ++   ++ + V  +RI  R + G  +   
Sbjct: 251 GLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDE 309

Query: 886 AKDERVVSVER-IRE----SEIVDE 905
             +    S+   I E    S+  DE
Sbjct: 310 TMEGEPTSIWLAIPEIKDTSDAKDE 334



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E    +   + L   E  I++V+++G+ KRTS   +  SN +     A       E  
Sbjct: 2   QAEIPEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGAEL---AMK-----EAD 53

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
             + +  +N  D ++L + KG  I  PV+E+ 
Sbjct: 54  HAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 85


>gi|311977868|ref|YP_003986988.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
 gi|76363498|sp|Q5UQE6|TOP2_MIMIV RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
           II
 gi|55417096|gb|AAV50746.1| topoisomerase II [Acanthamoeba polyphaga mimivirus]
 gi|308204860|gb|ADO18661.1| DNA topoisomerase 2 [Acanthamoeba polyphaga mimivirus]
          Length = 1263

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 29/255 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
           R++P+L DG KP HR++ +G ++  +   K+ +K + ++G V  M KYH HG+ ++   +
Sbjct: 735 RSVPNLMDGFKPSHRKVFYGSVEKNIY--KQEIKVSDLTGFVSNMTKYH-HGDQSLSSTI 791

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQ++  S  L L+   G FGS    G   A+ RY   +L   A  +  D   D +  
Sbjct: 792 VGMAQNYVGSNNLNLLMPLGMFGSRLTGGKDSASPRYLNTKLDDLAKKIFIDYDFDILQH 851

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
           + + D    EPV      P +LVNG  GI  G +T I   N  +++     ++ N +   
Sbjct: 852 Q-SEDNCRIEPVYYAPIIPMILVNGAEGIGTGYSTKIYPCNPRDIIANIKRLLTNENPKT 910

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                       P    + G     +         + R    I      ++ I +T++P 
Sbjct: 911 MK----------PWFRHLTGTIEKIDG-----AKYISRAKYEI----IGKDTIHITDLPV 951

Query: 274 QVNKAAMLEKIAELV 288
            +        +  L+
Sbjct: 952 GIWTDNYKAFLDNLI 966


>gi|11558104|emb|CAC17731.1| GyrA protein [Mycobacterium gastri]
          Length = 550

 Score =  148 bits (374), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 50/80 (62%), Gaps = 6/80 (7%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ++ + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS   DPPAA
Sbjct: 1   DRSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAA 60

Query: 128 ERY-----TECRLQKAAHFL 142
            RY     T  RL      +
Sbjct: 61  MRYCTTGDTLVRL-PFGQSM 79



 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/67 (61%), Positives = 50/67 (74%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  ++ ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 484 TEARLTPLAMEIVREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 543

Query: 191 PTHNLGE 197
           P HN GE
Sbjct: 544 PPHNKGE 550


>gi|312192213|gb|ADQ43803.1| DNA gyrase subunit A [Aerococcus urinae]
          Length = 64

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/64 (60%), Positives = 53/64 (82%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+GM ++GV  +K Y K ARI G+VMGKYHPHG++AIY+++ RMAQD+S R +L++G G
Sbjct: 1   ILYGMNELGVTPDKPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHG 60

Query: 116 NFGS 119
           NFGS
Sbjct: 61  NFGS 64


>gi|313640113|gb|EFS04735.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171]
          Length = 140

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 63/108 (58%), Gaps = 2/108 (1%)

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           E+   ++ +L V+EKG+GK+T +  + + NR G G++   +++ N  G LVA+  V   +
Sbjct: 2   EVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKTVTITEKN--GNLVAMKTVTGEE 59

Query: 852 QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            ++L++  G LIR  ++ +    R+  GV +    +DE+V +V ++ +
Sbjct: 60  DLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDEKVATVAKVPK 107



 Score = 61.3 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL----DSRDEILSVETCTQENDILLT 699
           ++  V+  T+ G  ++   S +  +   G + +K     +    +++++T T E D++L 
Sbjct: 6   DDEKVLVVTEKGYGKQTPASQYP-LRNRGGMGVKTVTITEKNGNLVAMKTVTGEEDLMLM 64

Query: 700 TKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMS 759
           T  G  +RF I  +    GR+++GV+ I L + ++V ++A V   +    E       ++
Sbjct: 65  TVSGVLIRFEIDTV-SQTGRSAMGVKLIRLDEDEKVATVAKVPKEEDIELEEEIDETLIT 123

Query: 760 AQRRLISGDTEEITSLK 776
                   D       +
Sbjct: 124 QVPDESFEDAPGSDLEE 140


>gi|166156951|gb|ABY83104.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156953|gb|ABY83105.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156955|gb|ABY83106.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156957|gb|ABY83107.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156959|gb|ABY83108.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156961|gb|ABY83109.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156963|gb|ABY83110.1| DNA gyrase A [Campylobacter jejuni]
 gi|166156965|gb|ABY83111.1| DNA gyrase A [Campylobacter jejuni]
          Length = 75

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/75 (57%), Positives = 53/75 (70%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           IL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R   I GQG
Sbjct: 1   ILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQG 60

Query: 116 NFGSVDGDPPAAERY 130
           NFGS+DGD  AA RY
Sbjct: 61  NFGSIDGDSAAAMRY 75


>gi|47419974|gb|AAT27339.1| DNA gyrase A [Campylobacter jejuni]
          Length = 264

 Score =  148 bits (373), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 115/290 (39%), Positives = 175/290 (60%), Gaps = 26/290 (8%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ 
Sbjct: 1   IRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKT 60

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +       
Sbjct: 61  VIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------- 113

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKEC 487
                                LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI   
Sbjct: 114 -------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEITRL 154

Query: 488 LDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGY 547
            +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY
Sbjct: 155 EEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGY 214

Query: 548 VKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           +KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G 
Sbjct: 215 IKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQ 264



 Score = 61.0 bits (146), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 82/192 (42%), Gaps = 18/192 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 85  IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 135

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++      +E +     +    R    +      +   + +E +  +  
Sbjct: 136 EREKIENELAELMKEITRLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 195

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      + I    + F  N 
Sbjct: 196 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE---SFFTANT 252

Query: 850 NDQIILVSDKGT 861
           +D ++ V+D+G 
Sbjct: 253 HDTLMFVTDRGQ 264


>gi|4566364|gb|AAD23316.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566366|gb|AAD23317.1| topoisomerase IV subunit A [Streptococcus oralis]
 gi|4566374|gb|AAD23321.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|330801777|ref|XP_003288900.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
 gi|325081045|gb|EGC34576.1| hypothetical protein DICPUDRAFT_4475 [Dictyostelium purpureum]
          Length = 1162

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 29/255 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
            R+IP + DGLK   R+IL+   +  +   KK +K A++ G V     YH HG  ++Y  
Sbjct: 667 ERSIPSIVDGLKTSQRKILYSCFKRNL---KKEIKVAQLIGYVSEHSAYH-HGEMSLYST 722

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  MAQ++  S    L+   G +G+    G   ++ RY   RL   A  L      + + 
Sbjct: 723 ILGMAQEYIGSNNANLLYPSGAYGTRIQGGKDASSARYIHTRLTDVARALYHPDDDNILA 782

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + DG   +P       P +LVNG  GI  G +T IP++N  ++V+    +++  ++ 
Sbjct: 783 CVVD-DGKKVQPKHYIPIIPMILVNGTVGIGTGWSTTIPSYNPRDLVENMKLLLNKQELK 841

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                   RG    TG ++    G         G  + RGV              VTE+P
Sbjct: 842 PIQP--WYRG---FTGEILESGKG---------GQYLSRGVWR----KLSEHSFEVTELP 883

Query: 273 YQVNKAAMLEKIAEL 287
                    E + EL
Sbjct: 884 INSWTQDYREFLDEL 898


>gi|76800082|ref|ZP_00781975.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
 gi|76584618|gb|EAO61431.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21]
          Length = 245

 Score =  148 bits (372), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 94/244 (38%), Positives = 154/244 (63%), Gaps = 3/244 (1%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             LSE Q++AIL++RL RLTGL RD I++E N L   I +  DIL+   R++ IIK+E+ 
Sbjct: 4   FELSERQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMD 63

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMV-VTVSHLGYVKRVPLSVYRAQRRGGKG 565
            VK +    RRT ++ G +   +++ ++ E+ V +T+S+ GY+KR+    +RAQ+RGG+G
Sbjct: 64  EVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRG 123

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
             G  + ++DFV +L   STH +VLFF++LG VY+ K + +P     A+G  ++N+L L+
Sbjct: 124 IQGTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLKLD 183

Query: 626 QGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEIL 685
           +GE I TI+   +++    N Y  F T+ G V+R  +S+F  I ++G  A+ L   DE++
Sbjct: 184 EGETIQTIINARKED--VANKYFFFTTQQGIVKRTSVSEFSNIRQNGLRAINLKENDELI 241

Query: 686 SVET 689
           +V  
Sbjct: 242 NVLL 245



 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 87/206 (42%), Gaps = 19/206 (9%)

Query: 707 RFPISAIRVFAGRNSVGVRGISLA-----KGDQVISM--AIVLHADADYDERICYMKHMS 759
           RF +S       R S  +  + L      + D++ S    ++       D      + ++
Sbjct: 3   RFELSE------RQSQAILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVT 56

Query: 760 AQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRI 819
             +  +     +    +    + G +     ++L  +E  ++T+S KG+ KR +  +FR 
Sbjct: 57  IIKEEMDEVKRKYADARRTELMIGEVLSLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRA 116

Query: 820 SNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKG 879
             R G+GI+ T V+  + +  LV+    + +D ++  ++ G + R+   EI    R  KG
Sbjct: 117 QKRGGRGIQGTGVNNDDFVRELVST---STHDTVLFFTNLGRVYRLKAYEIPEYGRTAKG 173

Query: 880 ---VVIFSTAKDERVVSVERIRESEI 902
              V +    + E + ++   R+ ++
Sbjct: 174 LPIVNLLKLDEGETIQTIINARKEDV 199



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 14/157 (8%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDER 751
           ++  +  G   R      R    R   G++G  +   D V  +      D         R
Sbjct: 97  LITLSNKGYIKRLAQDEFRAQK-RGGRGIQGTGVNNDDFVRELVSTSTHDTVLFFTNLGR 155

Query: 752 ICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKR 811
           +  +K         +     I +L      E   +    ++  +  ++    +++G  KR
Sbjct: 156 VYRLKAYEIPEYGRTAKGLPIVNLLKLDEGETIQTIINARKEDVANKYFFFTTQQGIVKR 215

Query: 812 TSSYDFR--ISNRSGKGIRATDVSKINEIGALVAVFP 846
           TS  +F     N    G+RA ++ +      L+ V  
Sbjct: 216 TSVSEFSNIRQN----GLRAINLKE---NDELINVLL 245


>gi|4566370|gb|AAD23319.1| topoisomerase IV subunit A [Streptococcus mitis]
 gi|4566376|gb|AAD23322.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 77

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 44/77 (57%), Positives = 57/77 (74%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDLGKDTV 151
           L + A +LL D+ K TV
Sbjct: 61  LSEIAGYLLQDIEKKTV 77


>gi|98990340|gb|ABF60239.1| DNA gyrase subunit A [Entomoplasma freundtii]
          Length = 88

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 55/86 (63%)

Query: 1  MTEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGM 60
          M+E            I  + I  E++  +L YA++VI+ RA+PDL+DGLKPV RRI++ M
Sbjct: 3  MSEDNKELKPFNHGKIEPIDIAAEIRKDFLEYAMSVIVSRALPDLKDGLKPVQRRIIYAM 62

Query: 61 MQMGVEWNKKYVKCARISGEVMGKYH 86
            +G+  +K + K ARI GEV+GKYH
Sbjct: 63 DDLGITADKPHKKSARIVGEVIGKYH 88


>gi|281208664|gb|EFA82840.1| DNA topoisomerase II [Polysphondylium pallidum PN500]
          Length = 1524

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 35/296 (11%)

Query: 3    EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILG--RAIPDLRDGLKPVHRRILFGM 60
            +        ++ GI  V ITD +    + ++   I    R+IP + DG K   R+ILF  
Sbjct: 776  DQYTPGAYLDQYGIKKVKITDFIDKELILFS---IADCERSIPSIVDGFKTSQRKILFSC 832

Query: 61   MQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGN 116
             +  +   KK +K A++ G V  +  YH HG+ ++  A+  +AQ +  +  + ++   G 
Sbjct: 833  FKRNL---KKEIKVAQLIGYVSEQSAYH-HGDQSLASAIIGLAQTYVGANNINVLYPGGG 888

Query: 117  FGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPN 173
            FGS    G   +A RY   RL++ A  L  +     +      DG   +P   +    P 
Sbjct: 889  FGSRLAGGKDSSAPRYINTRLEEIARTLFPEEDHALLS-HLTDDGKRVQPKWYIPV-IPM 946

Query: 174  VLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILG 233
            +LVNG  GI  G ++ IP +N  ++++    +I+  ++              P      G
Sbjct: 947  ILVNGSKGIGTGWSSTIPNYNPRDLIENMKLLIEGKELK-------------PIVPWYRG 993

Query: 234  RTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVR 289
              G          + V +GV        D  ++ +TE+P +       + +  L+ 
Sbjct: 994  FKGTIELQTGKTSNFVAKGVWR----KLDEYRLEITELPIESWTNDFKDLVQNLID 1045


>gi|71842516|gb|AAZ43365.1| ParC [Escherichia coli]
          Length = 73

 Score =  147 bits (371), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 3/73 (4%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K AR  G+V+GKYHPHG+ A Y A+  MAQ +S R  L++GQGN+G+ D DP  
Sbjct: 2   ASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKS 60

Query: 126 -AAERYTECRLQK 137
            AA RYTE RL K
Sbjct: 61  FAAMRYTESRLSK 73


>gi|60651674|gb|AAX32848.1| GyrA [Riemerella anatipestifer]
          Length = 60

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           K ARI G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RY
Sbjct: 2   KSARIVGDVLGKYHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRY 59


>gi|47419992|gb|AAT27348.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 114/280 (40%), Positives = 171/280 (61%), Gaps = 26/280 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V
Sbjct: 2   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLNHRKTV 61

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +        
Sbjct: 62  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNATARDSLVAK-------- 113

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 114 ------------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLD 155

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 156 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 215

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
           KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +
Sbjct: 216 KRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDT 255



 Score = 51.3 bits (121), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 75/189 (39%), Gaps = 19/189 (10%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 53  LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---ATARDS 109

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 110 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 163

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    +      +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 164 LENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 223

Query: 818 RISNRSGKG 826
               R GKG
Sbjct: 224 EKQKRGGKG 232


>gi|328871183|gb|EGG19554.1| DNA topoisomerase II [Dictyostelium fasciculatum]
          Length = 1574

 Score =  147 bits (371), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 32/258 (12%)

Query: 39   GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
             R+IP + DGLK   R+IL+   +  +   KK ++ A++ G V     YH HG A++   
Sbjct: 812  ERSIPSIVDGLKISQRKILYSCFKRNL---KKELRVAQLIGYVSEHSAYH-HGEASLAST 867

Query: 97   LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
            +  MAQD+  S  +  +   G+FGS    G   +  RY    L+     L      + + 
Sbjct: 868  IINMAQDYVGSNNINTLYPSGSFGSRLQGGKDSSQPRYIHTCLRDITRTLFHQDDDNLLT 927

Query: 153  FRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  N DG   +P   +    P VLVNG  GI  G +++IP +N  +++     ++D  ++
Sbjct: 928  YV-NDDGKKVQPKWYMPT-IPFVLVNGSSGIGTGYSSSIPNYNPRDLIQCMRDLLDEKEM 985

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                                 G  G          + + +G            ++ VTE+
Sbjct: 986  TDIKPWY-------------RGFRGSIE--PKSHQTYLCKGAWK----KLSEYELEVTEL 1026

Query: 272  PYQVNKAAMLEKIAELVR 289
            P      +  E +  LV 
Sbjct: 1027 PIGTWTQSFKELLELLVD 1044


>gi|1017803|gb|AAA79196.1| DNA gyrase A subunit [Streptococcus pneumoniae]
          Length = 63

 Score =  147 bits (370), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 39/63 (61%), Positives = 53/63 (84%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K + K ARI+G+VMGKYHPHG+++IY+A+ RMAQ WS R +L++G GNFGS+DGD  AA
Sbjct: 1   DKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAA 60

Query: 128 ERY 130
           +RY
Sbjct: 61  QRY 63


>gi|301109930|ref|XP_002904045.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
 gi|262096171|gb|EEY54223.1| DNA topoisomerase 2 [Phytophthora infestans T30-4]
          Length = 807

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/356 (23%), Positives = 148/356 (41%), Gaps = 37/356 (10%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDAL 97
           R+IP +R   KP  R++LF   +  +      +K A+++G V     YH HG A++   +
Sbjct: 394 RSIPSVR--FKPSQRKVLFCCFKRNLRAE---LKVAQLAGYVSEHSAYH-HGEASLQGCI 447

Query: 98  ARMAQDW--SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
             MAQD+  S  + L+   G FGS  + G   A+ RY    L++    +   L  D + +
Sbjct: 448 VNMAQDFVGSNNIHLLPPIGQFGSRLMGGKDAASARYIFTNLEQLTRLIYHPLDNDCLKY 507

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
             + DG   EP       P VLVNG  GI  G +   P +N  +++ G   +I+  +I  
Sbjct: 508 -LSEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWS---PNYNPLDIIKGLRQMINGEEIAP 563

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY 273
                          A   G            G+ +++G+  +     D   +VV+E+P 
Sbjct: 564 LTPWYREFTGHIVEKANSRGTD---------TGNYIVQGLYEV----TDDSTLVVSELPV 610

Query: 274 QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ--LYRYT 331
           +       + +  L+    I D  +  + +D +     I +++ A +DV      + +  
Sbjct: 611 KSWTQTYKQFLEGLLDAGTIKDFKE--NHTDVK-VLFTITMEQKALSDVTKAPGGIVKKF 667

Query: 332 SLQSLFSVNMVALNG---YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
            L+S  S + + L     +  +      I+  F   R E   RR K +L K +D+ 
Sbjct: 668 KLESSLSTSNMHLFDAAGHIKKYENPKEIMAEFYGIRLEYYGRRKKAMLQKLQDQI 723


>gi|47419982|gb|AAT27343.1| DNA gyrase A [Campylobacter jejuni]
          Length = 261

 Score =  147 bits (370), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 115/287 (40%), Positives = 175/287 (60%), Gaps = 26/287 (9%)

Query: 307 GYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFRE 366
           G RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+
Sbjct: 1   GIRVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRK 60

Query: 367 EVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASD 426
            V++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +      
Sbjct: 61  TVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------ 114

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                                 LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI  
Sbjct: 115 --------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIAR 154

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLG 546
             +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H G
Sbjct: 155 LEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRG 214

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
           Y+KRVP   Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +
Sbjct: 215 YIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 261



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 80/188 (42%), Gaps = 18/188 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 86  IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 136

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 137 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 196

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      + I    + F  N 
Sbjct: 197 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE---SFFTANT 253

Query: 850 NDQIILVS 857
           +D ++ V+
Sbjct: 254 HDTLMFVT 261


>gi|312086869|ref|XP_003145247.1| hypothetical protein LOAG_09672 [Loa loa]
 gi|307759590|gb|EFO18824.1| hypothetical protein LOAG_09672 [Loa loa]
          Length = 655

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/459 (19%), Positives = 176/459 (38%), Gaps = 50/459 (10%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDAL 97
           R++P++ DG KP  R++LF M      + +  V+ ++++G V     YH HG  ++ + +
Sbjct: 201 RSLPNIVDGYKPSQRKVLFTMFG---RYERDEVRVSQLAGAVSQYCGYH-HGEESLVNTI 256

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDF 153
            R+AQD+  S  L L+   G FG+    G+  A+ RY    L   A  +        + +
Sbjct: 257 IRLAQDFVGSNNLNLLLPLGQFGTRLAGGEDAASARYIYTSLSPLARIIFPRADDKVLKY 316

Query: 154 RPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDL 213
               + +F EP   C   P +L+NG  GI  G AT I      +++     +ID   +  
Sbjct: 317 LME-ENTFIEPEWYCPIIPMILINGAEGIGTGWATKILPRCPRQIISNAQRLIDGRPLQD 375

Query: 214 DALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV---TE 270
                    P F      +     +           I G     +       I+    T 
Sbjct: 376 M-------LPHFRKFQGTINEITPRQ--------YSISGKISYHRLRSGLRAIITELPTG 420

Query: 271 IPYQVNKAAMLEKIAE--LVREKRIVDIADLRDESDRQGYRVVI--ELKRGASADVILNQ 326
           I     K  +L+ I +  L+         +L  ES+      VI   L         LN+
Sbjct: 421 IWNNKYKEKVLDSIMKSGLISYFICSSYEELHSESNVHFILHVIDKPLISDKKQIKTLNR 480

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           L +  S+ S  S+ +        +  + + I + F   R +  V R +Y L     +   
Sbjct: 481 LLKLRSVASENSMILFDEKNVLRKYNSTVDIFQEFFEVRRQKYVERREYELKAMDKKLKF 540

Query: 387 LVGLAIAVANLDEVV--RIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
              +   V  ++ V+   II    N      +++++ ++++ +K + + +D++  +    
Sbjct: 541 ---IGNQVRFVNAVINGEIIIEKKNRVEIVTQIIEKGFDSNPMK-MKNTVDENRNSPDFA 596

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                       +L++ L RL+      ++ + + L   
Sbjct: 597 -----------YLLDMPLCRLSNEEILILQEKRSELWER 624


>gi|1498005|gb|AAB06319.1| DNA gyrase A subunit [Campylobacter coli]
          Length = 60

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 70  KYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAER 129
            Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   I+GQGNFGS+DGD  AA R
Sbjct: 1   AYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSIDGDGAAAMR 60


>gi|224533041|ref|ZP_03673647.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
 gi|224512035|gb|EEF82430.1| DNA topoisomerase 4 subunit A [Borrelia burgdorferi WI91-23]
          Length = 114

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/102 (39%), Positives = 61/102 (59%), Gaps = 8/102 (7%)

Query: 19  VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
           + I   +++++L Y+  VI  RAI  + DG KPV RRI+  + +M    +  + K A + 
Sbjct: 1   MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57

Query: 79  GEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
           G  M KYHPHG+ +IY+AL  +A     + L IE QGNFG++
Sbjct: 58  GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNL 94


>gi|46191315|ref|ZP_00206761.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Bifidobacterium longum
          DJO10A]
          Length = 115

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 1  MTEHIISSDEE-----EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRR 55
          M  H   S +       ++ I    + +EM  S+L YA +VI  RA+PD RDGLKPV RR
Sbjct: 1  MASHRKPSAQTYDPRTVKEHIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRR 60

Query: 56 ILFGMMQMGVEWNKKYVKCARISGEVMGKYHP 87
          I++ M +M +  ++ Y+K AR+ GEVMGK HP
Sbjct: 61 IVYQMGEMNLTPDRPYMKSARVVGEVMGKLHP 92


>gi|4928199|gb|AAD33460.1|AF129761_1 DNA topoisomerase IV subunit C [Streptococcus constellatus]
          Length = 74

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKAA 139
            RYTE RL + A
Sbjct: 61  MRYTEARLSEIA 72


>gi|325515305|gb|ADZ24286.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668268|gb|ADZ44578.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score =  146 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 50/59 (84%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|317158221|ref|XP_001826919.2| DNA topoisomerase 2 [Aspergillus oryzae RIB40]
          Length = 1700

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/426 (16%), Positives = 156/426 (36%), Gaps = 57/426 (13%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            +  ++ +S TD +    + +++   + R+IP + DGLKP  R++L+   +  ++ +   +
Sbjct: 775  DHSVSKISYTDFINKELILFSMADNV-RSIPSVVDGLKPGQRKVLYTCFRRNLKKD---M 830

Query: 73   KCARISGEV--MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
            K   ++G V  M  Y  HG+ ++   +  +AQ +                 G   A+ RY
Sbjct: 831  KVVELAGHVSGMTAYQ-HGDISLQQTIVGLAQSF----------------GGSDCASARY 873

Query: 131  TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
               RL   A  +        + +  + DG   EP +     P +LVNG  GI  G +++I
Sbjct: 874  IYTRLSPFARRVFHAHDDPLLTYNED-DGEKIEPEIYVPVVPMILVNGADGIGTGWSSSI 932

Query: 191  PTHNLGEVVDGCVAVIDNPDIDLDALMEI-IRGPDFPTGAVILGRTGIKNAYATGRGSIV 249
            P +N  ++VD    ++D  +            G     G      +GI            
Sbjct: 933  PNYNPEDIVDNLKRLMDGEETRPMQPWFRGFTGEVTDVGGDRFKFSGIIK---------- 982

Query: 250  IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYR 309
                          +++ +TE+P +       +K+ ++++ ++         + +     
Sbjct: 983  ----------ETGEKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKN 1032

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
            +   L  G          ++ +   +  ++      G   +  T+  ILK F  +R +  
Sbjct: 1033 MKSALSEGLEEK------FKLSKTVATTNLVAFDPEGRITKYATVDDILKEFYTYRLKFY 1086

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
             +R +Y L++ +        L         V  II         ++ ++ +       K 
Sbjct: 1087 EKRKQYQLSQLQKE------LDKLSNQARFVQEIIDGKLVVSKKKKNVLVQELKDKGYKA 1140

Query: 430  LIDLID 435
               + +
Sbjct: 1141 FPKVAE 1146


>gi|4928191|gb|AAD33456.1|AF129757_1 DNA topoisomerase IV subunit C [Streptococcus oralis ATCC 35037]
 gi|4928195|gb|AAD33458.1|AF129759_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|4928197|gb|AAD33459.1|AF129760_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 74

 Score =  146 bits (368), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKAA 139
            RYTE RL + A
Sbjct: 61  MRYTEARLSEIA 72


>gi|49425512|gb|AAT66071.1| DNA topoisomerase IV subunit A [Shigella dysenteriae]
          Length = 69

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
            AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 1   SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 59

Query: 132 ECRLQKAAH 140
           E RL K + 
Sbjct: 60  ESRLSKYSE 68


>gi|284027752|gb|ADB66701.1| ParC [Salmonella enterica subsp. enterica]
          Length = 90

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 55/84 (65%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDAL 97
           + R +P + DGL PV RRI++ M  +GV    K+   AR  G+ +GK HPHG++A Y+ +
Sbjct: 7   MDRVLPSIGDGLGPVQRRIVYAMSALGVNATAKFKLSARTVGDGLGKNHPHGDSASYEDM 66

Query: 98  ARMAQDWSLRLLLIEGQGNFGSVD 121
             MAQ +S R  L++GQGN+G+ D
Sbjct: 67  FLMAQPFSYRYPLVDGQGNWGAPD 90


>gi|148645150|gb|ABR01099.1| GyrA [uncultured Geobacter sp.]
          Length = 131

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 54/184 (29%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  D++++V     + D+LL T  G+ +RF  S +R  + R S GVRG+SL   D
Sbjct: 2   IAVNLDEGDKLIAVALTDGKQDVLLATSNGKSIRFKESDVRTVS-RVSRGVRGMSLDADD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI M I+                                                    
Sbjct: 61  VVIGMEIINDM------------------------------------------------- 71

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 + TV+E GFGKRT   ++R  +R GKGI     ++ N  G +V +  VND + +
Sbjct: 72  --SGSTLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERN--GCVVDIMQVNDENDL 127

Query: 854 ILVS 857
           +L++
Sbjct: 128 MLIT 131



 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I A ++ + ++   L+AV   +    ++L +  G  IR   +++R  SR ++GV   S  
Sbjct: 1   IIAVNLDEGDK---LIAVALTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSLD 57

Query: 887 KDERVVSVERIRE 899
            D+ V+ +E I +
Sbjct: 58  ADDVVIGMEIIND 70



 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND--N 850
           L   +Q +L  +  G   R    D R  +R  +G+R   +   +    ++ +  +ND   
Sbjct: 17  LTDGKQDVLLATSNGKSIRFKESDVRTVSRVSRGVRGMSL---DADDVVIGMEIINDMSG 73

Query: 851 DQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIRESEI 902
             +  V++ G   R  ++E R  SR  KG++   T + +  VV + ++ +   
Sbjct: 74  STLFTVTENGFGKRTELSEYRCQSRGGKGIITIKTTERNGCVVDIMQVNDEND 126


>gi|36988526|gb|AAQ87918.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 73

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 3/74 (4%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ 
Sbjct: 1   SELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAP 60

Query: 121 DGDPP--AAERYTE 132
           D DP   AA RYTE
Sbjct: 61  D-DPKSFAAMRYTE 73


>gi|224055129|ref|XP_002298421.1| predicted protein [Populus trichocarpa]
 gi|222845679|gb|EEE83226.1| predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 127/351 (36%), Gaps = 31/351 (8%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS---GEVM--GKYHPHGNAA 92
            L R+IP + DGLKP  R+ILF   +      + +VK A+IS   G V     YH HG  +
Sbjct: 691  LQRSIPSMVDGLKPGQRKILFCSFK------RNFVKEAKISQFSGYVSEHSAYH-HGEQS 743

Query: 93   IYDALARMAQDW--SLRLLLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGK 148
            +   +  MAQD+  S  + L+   G FG  SV G   A+ RY   +L     FL      
Sbjct: 744  LASTIIGMAQDFVGSNNINLLLPNGQFGTRSVGGKDHASARYIYTQLSPITRFLFPKDDD 803

Query: 149  DTVDFRPNYDGSFQEP-VVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVID 207
              +D+    DG   EP   +    P VLVNG  GI  G +T IP +N  ++V     +++
Sbjct: 804  GLLDYLDE-DGQTIEPNWYMPI-IPMVLVNGCEGIGTGWSTFIPNYNPRDIVANIRRLLN 861

Query: 208  NPDIDLDALM-EIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
               ++         +G      +   G +   N          +R    I +    R   
Sbjct: 862  GEMMEPMNPWYRGFKGTIEKGASKEAGCSYTVNGVINEVNETTLR----ITELPIRRWTD 917

Query: 267  VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
                    V +    E         +   I D R   D       + L            
Sbjct: 918  DYKAFLNSVTEGNRDENG----NLPKDPFIKDFRKYGDDATVVFEVLLSEENMMIAKQEG 973

Query: 327  LYRYTSLQSLFSVNMVALNGY---KPERFTLIGILKAFVAFREEVVVRRTK 374
            L +   L +  S + + L        +      IL+ F   R E   RR K
Sbjct: 974  LLKKFKLTTTISTSNMHLFDSAGVIKKYDNPEQILEEFFHLRLEYYERRKK 1024


>gi|325668272|gb|ADZ44580.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|36988511|gb|AAQ87917.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 72

 Score =  145 bits (366), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 3/73 (4%)

Query: 62  QMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVD 121
           ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D
Sbjct: 1   ELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD 60

Query: 122 GDPP--AAERYTE 132
            DP   AA RYTE
Sbjct: 61  -DPKSFAAMRYTE 72


>gi|48425718|pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
          Length = 312

 Score =  145 bits (365), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/366 (19%), Positives = 133/366 (36%), Gaps = 59/366 (16%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D + +E++VV ++  G++KR+  + Y+ Q  GGKG S   + D D +     V+TH  + 
Sbjct: 3   DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLF 62

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             S+ G +Y    + +   S  ++G+ +  +++L   E I T                  
Sbjct: 63  MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILT------------------ 104

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
                                    +K             T +  +LLTT  G+  RF  
Sbjct: 105 -------------------------IKNSKD--------LTDDAYLLLTTASGKIARFES 131

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           +  +    R   GV  I L   D V S  IV     D        K  +           
Sbjct: 132 TDFKAVKSR---GVIVIKLNDKDFVTSAEIVF---KDEKVICLSKKGSAFIFNSRDVRLT 185

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
              +                     +  ++L VSE G+GKR +        R   G  + 
Sbjct: 186 NRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSY 245

Query: 831 DVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             S   + G++V    V+++D+I+LVS +   +R    ++    +  +G+ +     ++ 
Sbjct: 246 KKSDK-KAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDS 303

Query: 891 VVSVER 896
           +VSV +
Sbjct: 304 LVSVSK 309



 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 86/216 (39%), Gaps = 11/216 (5%)

Query: 689 TCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA-- 746
              +EN +++ TK G   R   +  +   G    G+    L  GD+++    V   D   
Sbjct: 4   LMQKENIVVMLTKKGFLKRLSQNEYK-LQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLF 62

Query: 747 -DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
              +E   Y+ +    +        +  S   +   +  I   +  +    + ++L  + 
Sbjct: 63  MISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA 122

Query: 806 KGFGKRTSSYDFR-ISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR 864
            G   R  S DF+ + +R   G+    +   N+   + +   V  ++++I +S KG+   
Sbjct: 123 SGKIARFESTDFKAVKSR---GVIVIKL---NDKDFVTSAEIVFKDEKVICLSKKGSAFI 176

Query: 865 VPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
               ++R+ +R T+GV      + +  V V  ++E+
Sbjct: 177 FNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN 212



 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 7/118 (5%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
             +L  KE  ++ +++KGF KR S  ++++    GKG+ + D+   N+   +V    VN 
Sbjct: 1   MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL---NDGDEIVIALCVNT 57

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSVERIRESEIVD 904
           +D + ++S++G L  +   EI+ +SRA+KG     + +    E ++++ +  +    D
Sbjct: 58  HDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTI-KNSKDLTDD 114


>gi|148645148|gb|ABR01098.1| GyrA [uncultured Geobacter sp.]
          Length = 132

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 51/184 (27%), Positives = 77/184 (41%), Gaps = 53/184 (28%)

Query: 674 IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGD 733
           IA+ LD  D+++SV       D+LL +K G+ +RF    +R   GR S GVRG+ L   D
Sbjct: 2   IAVNLDEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRTV-GRVSRGVRGMMLEDDD 60

Query: 734 QVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQEL 793
            VI MAI+     D                                              
Sbjct: 61  VVIGMAILNEHFTDST-------------------------------------------- 76

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
                 + TV+E G+GKRT   ++R   R GKGI     ++ N  G +V +  VND++ +
Sbjct: 77  ------LFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERN--GCVVDIKQVNDDNDL 128

Query: 854 ILVS 857
           +L++
Sbjct: 129 MLIT 132



 Score = 63.3 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTA 886
           I A ++ + ++   L++V   +    ++L S  G  IR    ++R   R ++GV      
Sbjct: 1   IIAVNLDEGDK---LISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMMLE 57

Query: 887 KDERVVSVERIRE 899
            D+ V+ +  + E
Sbjct: 58  DDDVVIGMAILNE 70



 Score = 42.5 bits (98), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
               +     L    Q +L  S+ G   R    D R   R  +G+R   +    +   ++
Sbjct: 7   DEGDKLISVALTDGRQDVLLASKNGKSIRFKEEDVRTVGRVSRGVRGMML---EDDDVVI 63

Query: 843 AVFPVND---NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-DERVVSVERIR 898
            +  +N+   +  +  V++ G   R  + E R  +R  KG++   T + +  VV ++++ 
Sbjct: 64  GMAILNEHFTDSTLFTVTENGYGKRTEIAEYRCQTRGGKGIITIKTTERNGCVVDIKQVN 123

Query: 899 ESEI 902
           +   
Sbjct: 124 DDND 127


>gi|213162316|ref|ZP_03348026.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 134

 Score =  144 bits (364), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 82/134 (61%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

Query: 175 LVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           +VNG  GIAVGMATNIP HNL EV++GC+A IDN DI ++ LME I GPDFPT A+I GR
Sbjct: 1   MVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGR 60

Query: 235 TGIKNAYATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRI 293
            GI+ AY TGRG + IR  + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+
Sbjct: 61  RGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRV 120

Query: 294 VDIADLRDESDRQG 307
             I+ LRDESD+ G
Sbjct: 121 EGISALRDESDKDG 134


>gi|9632132|ref|NP_048939.1| hypothetical protein PBCV1_A583L [Paramecium bursaria Chlorella virus
            1]
 gi|2447074|gb|AAC96932.1| PBCV-1 DNA topoisomerase II [Paramecium bursaria Chlorella virus 1]
          Length = 1061

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 176/439 (40%), Gaps = 51/439 (11%)

Query: 7    SSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVE 66
                + +     V + D +    + ++    L R+IP + DG KP  R++L+   +  + 
Sbjct: 619  EPGNQLDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVLYCAFKRNLT 677

Query: 67   WNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW----SLRLLLIEGQGNFGSV 120
             +   VK A+ SG V     YH HG  ++   +  +AQD+    ++  LL EGQ  FGS 
Sbjct: 678  SD---VKVAQFSGYVAEHSAYH-HGEVSLQGTIVNLAQDYVGSNNINWLLPEGQ--FGSR 731

Query: 121  --DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNG 178
               G   A+ RY   +L      +  D   + + +  + DG   EP       P++LVNG
Sbjct: 732  LQGGKDHASARYIFTKLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNG 790

Query: 179  GGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM-EIIRGPDFPTGAVILGRTGI 237
              GI  G +TNIP++N  ++VD    +I   D+       +  +G    T   +    G+
Sbjct: 791  SSGIGTGSSTNIPSYNPKDIVDNVKRLISGEDLVEMKPWYKGFKGKIMETSPGVYVTKGL 850

Query: 238  KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
                                    + + IVV+E+P         E +  L+ +K I    
Sbjct: 851  YM---------------------PNGKTIVVSELPVGKWTHDYKEHLDGLLEKKIISYFR 889

Query: 298  DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYK--PERFTLI 355
            +   ++D       +  +     +  ++ L   T+++S    NM A +      +  T +
Sbjct: 890  EKHSDTD-------VLFEIDFVGNPNIDILKLETTIRST---NMHAFDPSGKIKKYDTPL 939

Query: 356  GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII-RFSPNPETAR 414
             I++ +   R+++ V+R  YLL     R ++       +  ++    II +   +  +A 
Sbjct: 940  DIIRDWFEVRKDLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAE 999

Query: 415  RELMQRSWNASDIKDLIDL 433
             E +           L+++
Sbjct: 1000 LEKLNFYKVDGKYDYLLNM 1018


>gi|4928193|gb|AAD33457.1|AF129758_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis SK1]
          Length = 74

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 68  NKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           +K Y K A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA
Sbjct: 1   DKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAA 60

Query: 128 ERYTECRLQKAA 139
            RYTE RL + A
Sbjct: 61  MRYTEARLSEMA 72


>gi|114228537|gb|ABI58273.1| DNA topoisomerase IV subunit A [Shigella flexneri]
          Length = 72

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 3/73 (4%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K  R  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP  
Sbjct: 1   ASAKFKKSDRTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKS 59

Query: 126 -AAERYTECRLQK 137
            AA RYTE RL K
Sbjct: 60  FAAMRYTESRLSK 72


>gi|325668260|gb|ADZ44574.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668262|gb|ADZ44575.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
          Length = 59

 Score =  144 bits (363), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 50/59 (84%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|47419996|gb|AAT27350.1| DNA gyrase A [Campylobacter coli]
          Length = 255

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 110/280 (39%), Positives = 170/280 (60%), Gaps = 26/280 (9%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT
Sbjct: 2   LKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLIELLNLFLTHRKTVIIRRT 61

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TAR  L+ +             
Sbjct: 62  IFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLVAK------------- 108

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          L+E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S
Sbjct: 109 -------------FGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKS 155

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP 
Sbjct: 156 ETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPS 215

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFS 593
             Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +
Sbjct: 216 KQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVT 255



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 87/220 (39%), Gaps = 22/220 (10%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T +  
Sbjct: 48  LFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---TTARDS 104

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F ++ ++      +  +  + L      + +++ + +A ++   A  DE +     
Sbjct: 105 LVAKFGLTELQ------ANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETL 158

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    R    +      +   + +E +  +   ++L   E  ++T++ +G+ KR  S  +
Sbjct: 159 LENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 218

Query: 818 RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
               R GKG  A      + I    + F  N +D ++ V+
Sbjct: 219 EKQKRGGKGKLAVTTYDDDFIE---SFFTANTHDTLMFVT 255


>gi|325515303|gb|ADZ24285.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|325668264|gb|ADZ44576.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
 gi|325668266|gb|ADZ44577.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Heidelberg]
          Length = 59

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|47420004|gb|AAT27354.1| DNA gyrase A [Campylobacter fetus]
          Length = 260

 Score =  144 bits (362), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 107/285 (37%), Positives = 169/285 (59%), Gaps = 26/285 (9%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT
Sbjct: 2   LKRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRT 61

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +             
Sbjct: 62  IFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK------------- 108

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q+ AIL++RL++LTGL R+ +  EL  +   I++   IL S
Sbjct: 109 -------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKS 155

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP 
Sbjct: 156 ETLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPS 215

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
             Y  Q+RGGKG+  V   D+DF+   F   +H +++F +  G +
Sbjct: 216 KSYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQL 260



 Score = 59.0 bits (141), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 79/193 (40%), Gaps = 18/193 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D ++++   + + +   + + G   +F +S ++      S  +  + L+     
Sbjct: 80  IALDNIDAVINLIKTSADTN---SARDGLMAKFGLSELQ------SNAILDMRLSKLTGL 130

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +  +L      D  +     +    R    + +        + +  +  +  
Sbjct: 131 EREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDID 190

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      + I    + F    
Sbjct: 191 VEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDDFIE---SFFTCMS 247

Query: 850 NDQIILVSDKGTL 862
           +D ++ V+D+G L
Sbjct: 248 HDTLMFVTDRGQL 260


>gi|36988551|gb|AAQ87920.1| DNA topoisomerase IV subunit A [Aeromonas caviae]
          Length = 71

 Score =  143 bits (361), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 3/72 (4%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122
           +G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D 
Sbjct: 1   LGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD- 59

Query: 123 DPP--AAERYTE 132
           DP   AA RYTE
Sbjct: 60  DPKSFAAMRYTE 71


>gi|60101258|gb|AAX13707.1| GyrA [Riemerella anatipestifer]
          Length = 57

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 47/56 (83%)

Query: 78  SGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTEC 133
            G+V+GKYHPHG+ ++YDA+ RMAQ WSLR   ++GQGNFGS+DGDPPAA RYTE 
Sbjct: 1   VGDVLGKYHPHGDRSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEA 56


>gi|66826863|ref|XP_646786.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
 gi|74997376|sp|Q55BP5|TOP2_DICDI RecName: Full=Probable DNA topoisomerase 2; AltName: Full=DNA
           topoisomerase II
 gi|60474622|gb|EAL72559.1| DNA topoisomerase II [Dictyostelium discoideum AX4]
          Length = 1521

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 11/185 (5%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
            R+IP++ DGLK  HR+ L+   +  +   KK +K A++ G V     YH HG A++Y  
Sbjct: 768 ERSIPNIVDGLKTSHRKTLYSCFKRNL---KKEIKVAQLIGYVSEHSAYH-HGEASLYST 823

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           +  MAQ++  S  + L+   G++G+    G   ++ RY   RL   A  +        + 
Sbjct: 824 IVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARYIHTRLNDIARAVYHADDDPILS 883

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
              + DG   +P       P +LVNG  GI  G ++ IP +N  +++      ID   + 
Sbjct: 884 CVVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTIPNYNPRDLIQNMRLAIDGKPLK 942

Query: 213 LDALM 217
                
Sbjct: 943 PIKPW 947


>gi|8248317|gb|AAF74140.1|AF246721_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248319|gb|AAF74141.1|AF246722_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248321|gb|AAF74142.1|AF246723_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248323|gb|AAF74143.1|AF246724_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248327|gb|AAF74145.1|AF246726_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
 gi|8248331|gb|AAF74147.1|AF246728_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248333|gb|AAF74148.1|AF246729_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|284192199|gb|ADB82819.1| topoisomerase IV subunit A [Coxiella burnetii]
          Length = 76

 Score =  143 bits (360), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 53  HRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            RRI++ M ++G++   KY K AR  G V+GK+HPHG+ A Y+A+  MAQ +S R   ++
Sbjct: 1   QRRIVYAMSELGLKSTAKYKKSARTVGNVLGKFHPHGDIACYEAMVLMAQPFSFRYPFVD 60

Query: 113 GQGNFGSVDGDPP--AA 127
           GQ N+GS D DP   AA
Sbjct: 61  GQSNWGSAD-DPKSFAA 76


>gi|325668270|gb|ADZ44579.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 59

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 49/59 (83%)

Query: 77  ISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           + G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL
Sbjct: 1   VVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 59


>gi|308445279|gb|ADO32825.1| ParC [Neisseria gonorrhoeae]
 gi|308445287|gb|ADO32829.1| ParC [Neisseria gonorrhoeae]
 gi|308445293|gb|ADO32832.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|47419980|gb|AAT27342.1| DNA gyrase A [Campylobacter jejuni]
          Length = 259

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 110/284 (38%), Positives = 170/284 (59%), Gaps = 26/284 (9%)

Query: 314 LKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
           LKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V++RRT
Sbjct: 2   LKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRT 61

Query: 374 KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
            + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +             
Sbjct: 62  IFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------------- 108

Query: 434 IDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
                          LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S
Sbjct: 109 -------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKS 155

Query: 494 RSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPL 553
            + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP 
Sbjct: 156 ETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPS 215

Query: 554 SVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
             Y  Q+RGGKG+  V   D+DF+   F  +TH +++F +  G 
Sbjct: 216 KQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQ 259



 Score = 61.7 bits (148), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 83/192 (43%), Gaps = 18/192 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 80  IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 130

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 131 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 190

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      + I    + F  N 
Sbjct: 191 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIE---SFFTANT 247

Query: 850 NDQIILVSDKGT 861
           +D ++ V+D+G 
Sbjct: 248 HDTLMFVTDRGQ 259


>gi|225550343|ref|ZP_03771292.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379497|gb|EEH01859.1| DNA topoisomerase IV, A subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 426

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 81/420 (19%), Positives = 176/420 (41%), Gaps = 38/420 (9%)

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           ++  ++   +A+    P   +L   L A +    +V+ +   Y LNK   R  ++ GL  
Sbjct: 1   MEISYNTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVLLRIEIVEGLIK 60

Query: 393 AVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            V  +DE+++IIR S + + A+  L+Q                          T   +  
Sbjct: 61  CVDLIDEIIKIIRASDSRQDAKNALIQ--------------------------TFAFTNN 94

Query: 453 QTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDEL 512
           Q  AI+ +RL  LT     D+RNE  SL  + K   + + S       +KQ+++  K E 
Sbjct: 95  QAEAIIMMRLHNLTRTDIFDLRNEWESLQQQAKTLKERIKSLQVRKNYLKQKMIEFKKEF 154

Query: 513 DTPRRT--RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
              R+T         ++ ++  I ++ + + +S  GY+K V    + + +        + 
Sbjct: 155 GYQRKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKTVSKKSFESSK-----YDELG 209

Query: 571 MRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERI 630
           ++  D +    ++++H  +L  +S   +      ++     +  G+ L N    +  E++
Sbjct: 210 LKTNDLLFYHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKV 269

Query: 631 TTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFI-QINRSGKIAMKLDSRDEILSVET 689
              +    ++   +   +V  +K   ++R +L++     N      MKL+  D ++S   
Sbjct: 270 V-AVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANL 328

Query: 690 CTQEND--ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADAD 747
             ++++  ++  +KLG  + F +  I     R + G++ + L   D++ S+ IV +    
Sbjct: 329 IKKDHNQFVVAISKLGLVLMFLVHEINCLN-RLAKGIKIMKLKPNDEISSILIVPNNGYS 387



 Score = 47.9 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
           D++ +        ++ K+ E  ++  S+    KR    +  + N++ K I    +   NE
Sbjct: 264 DANEKVVAVYVCNEQFKVDEHQLVLGSKLNLIKRIELNELDL-NKNSKQISIMKL---NE 319

Query: 838 IGALVAVFPVNDNDQ--IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
              L++   +  +    ++ +S  G ++   V+EI   +R  KG+ I     ++ + S+ 
Sbjct: 320 NDGLISANLIKKDHNQFVVAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPNDEISSIL 379

Query: 896 RIR 898
            + 
Sbjct: 380 IVP 382


>gi|308445285|gb|ADO32828.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYGAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|2501246|sp|Q49608|GYRA_MYCKA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mka
           gyrA intein
 gi|1122294|emb|CAA92431.1| DNA gyrase subunit A [Mycobacterium kansasii]
          Length = 549

 Score =  142 bits (358), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 44/65 (67%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
              + + K AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQGNFGS    PP
Sbjct: 1   RPARSHAKSARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNVPP 60

Query: 126 AAERY 130
           AA RY
Sbjct: 61  AAMRY 65



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/64 (62%), Positives = 48/64 (75%)

Query: 131 TECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNI 190
           TE RL   A  +L ++ ++TVDF PNYDG  QEP VL +R+PN+L NG GGIAVGMATNI
Sbjct: 486 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 545

Query: 191 PTHN 194
           P HN
Sbjct: 546 PPHN 549


>gi|330685624|gb|EGG97268.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU121]
          Length = 415

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 144/319 (45%), Gaps = 11/319 (3%)

Query: 431 IDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
           + L    +           +E Q  AI+ L+L RLT      +  E + L   IK+   I
Sbjct: 8   VILKIKKNAKDNLVAEFDFTEAQAEAIVMLQLYRLTNTDIVALEQEHDELSNLIKDLRHI 67

Query: 491 LSSRSRLLGIIKQELLSVKDELDTPRRTRI--VEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           L     LL +IK EL  ++ +  T R + I      + ++ E  +  E++V++++  GY+
Sbjct: 68  LDDHDALLNVIKNELTEIRKKFKTDRLSTIEAEISEIKIDKEVMVPSEEVVLSLTRHGYI 127

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPI 608
           KR     + A        S V ++D D +     V+T  + L F++ G      V +L  
Sbjct: 128 KRTTTRSFNASG-----VSEVGLKDGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAE 182

Query: 609 GSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQI 668
              +  G+ +  I+S+++ E++  +    +        + + AT++G ++++ +  F   
Sbjct: 183 IRWKELGQHVSQIVSIDEDEQVIDVFNEKDFSQH--EAFYIMATRNGMIKKSSVPQFKTT 240

Query: 669 NRSGK-IAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
             +   IAMK+  +DE++++     +  I + T  G  + +  + +    G  + GV+ I
Sbjct: 241 RYNKPLIAMKVKDQDEVINIMRVESDQLITVITHKGMSLTYSTNEL-SDTGLRAAGVKSI 299

Query: 728 SLAKGDQVISMAIVLHADA 746
           +L   D V+   ++ H+++
Sbjct: 300 NLKDEDFVVMTQMINHSES 318



 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 17/226 (7%)

Query: 682 DEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
           D+ + V     E  +L  T+ G   R   +  R F   N+ GV  + L  GD ++    V
Sbjct: 107 DKEVMVP---SEEVVLSLTRHGYIKR---TTTRSF---NASGVSEVGLKDGDSLLKYLDV 157

Query: 742 LHADA----DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
              D         R  ++              + ++ + +    E  I     ++    E
Sbjct: 158 NTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVIDVFNEKDFSQHE 217

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
            F +  +  G  K++S   F+ + R  K + A  V        ++ +  V  +  I +++
Sbjct: 218 AFYIMATRNGMIKKSSVPQFKTT-RYNKPLIAMKVKD---QDEVINIMRVESDQLITVIT 273

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            KG  +    NE+        GV   +   ++ VV  + I  SE V
Sbjct: 274 HKGMSLTYSTNELSDTGLRAAGVKSINLKDEDFVVMTQMINHSESV 319



 Score = 40.2 bits (92), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 17/121 (14%)

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
             E +  +   + +   E+ +L+++  G+ KRT++  F  S  S  G++        +  
Sbjct: 98  EAEISEIKIDKEVMVPSEEVVLSLTRHGYIKRTTTRSFNASGVSEVGLK--------DGD 149

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPV---NEIR--IASR-ATKGVVIFSTAKDERVVS 893
           +L+    VN  D  ++ ++KG  + +PV    EIR     +  ++   I S  +DE+V+ 
Sbjct: 150 SLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQ---IVSIDEDEQVID 206

Query: 894 V 894
           V
Sbjct: 207 V 207


>gi|284504201|ref|YP_003406916.1| DNA topoisomerase II [Marseillevirus]
 gi|282935639|gb|ADB03954.1| DNA topoisomerase II [Marseillevirus]
          Length = 1089

 Score =  142 bits (357), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 149/397 (37%), Gaps = 53/397 (13%)

Query: 40   RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDAL 97
            R+IP + DGLKP  R++L+      +    K     R++GEV  +  YH HG  ++ + +
Sbjct: 666  RSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRLTGEVASVAGYH-HGEKSLTETI 724

Query: 98   ARMAQDW---SLRLLLIEGQGNFGS--VDGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
              MAQD+      + L+   G+FG+    G   +A RY    ++K A  +      D  +
Sbjct: 725  IGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSASRYLSSFVEKIARVVFPPEDDDLYE 784

Query: 153  --FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
              F  N    + EP+      P ++VNG  GI  G +T IP HN  EV       ++  +
Sbjct: 785  KVFEDN---EYNEPINYIPIIPLIVVNGACGIGTGHSTEIPPHNPLEVCHWIRCWLE--E 839

Query: 211  IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
             +   L    +G          G T ++           ++    +EK S  + +IV T 
Sbjct: 840  QETPKLSPWWKG--------FNGTTEVEED--------KVKTFGVLEKMSKTKWKIVETP 883

Query: 271  IP-YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
            +  +  +    LE +      K   D       S       +I   +       +  L  
Sbjct: 884  VGLWTYDCKKHLESLETQKHIKSFEDKYTDEKAS------FIINTTKDFIP--TIKNLKL 935

Query: 330  YTSLQSLFSVNMVALNGYK--PERFTLIGILKAFVAFREEVVVRR--------TKYLLNK 379
             T+       NM AL+      +  T+  IL  +   R  +  +R        ++ +L +
Sbjct: 936  STTFSLR---NMTALDEKDNPVKFSTVDDILLKYCPERLRLYQKRKDKMLADLSQEILKQ 992

Query: 380  ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
            A  +  +   L   +    +   +++   +    +  
Sbjct: 993  ANKQRFLKDVLDGILEMKQQEELLLQKMEDMAYDKWN 1029


>gi|73852918|ref|YP_294202.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|72415634|emb|CAI65871.1| putative DNA topoisomerase [Emiliania huxleyi virus 86]
 gi|283481658|emb|CAZ69774.1| putative DNA topoisomerase [Emiliania huxleyi virus 99B1]
          Length = 1103

 Score =  141 bits (355), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 96/490 (19%), Positives = 179/490 (36%), Gaps = 69/490 (14%)

Query: 40   RAIPDLRDGLKPVHRRIL-FGMMQMGVEWNKKYVKCARISG---EVMGKYHPHGNAAIYD 95
            R+IP + DG K   R+++ + +  +G    K   K A+++G   +V  +YH HG  ++ +
Sbjct: 664  RSIPKMLDGQKAGQRKVVFYALNHVG----KNEAKVAQMAGTAAQVT-QYH-HGEVSLAN 717

Query: 96   ALARMAQDW--SLRLLLIEGQGNFGSVDGD-PPAAERYTECRLQKAAHFLLDDLGKDTVD 152
             +  MA  +  S  L L+   G FGS       AA RY    +      L+     D + 
Sbjct: 718  TIIGMAATYTGSHNLPLLYPSGQFGSRHAKNSAAAPRYIFTHISSFLPRLIKSEDNDVLT 777

Query: 153  FRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDI 211
            +  N D + + EP V     P VLVNG  GI  G   ++P +N  EV+D C  + +  ++
Sbjct: 778  Y--NVDENKKVEPTVYIPVIPIVLVNGANGIGTGWKCDVPQYNPLEVIDACKRMANGGEL 835

Query: 212  DLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEI 271
                 +    G +        G   I   Y     ++ +                  TE+
Sbjct: 836  STSKWVPWYVGYNGKMEETTDGFNSI-GTYEVSGNTLTV------------------TEL 876

Query: 272  PYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
            P        +E I  L+ +K      +L  +S      V I+L   +  D  +  L   T
Sbjct: 877  PIGRATEDWIESIQSLIPDKIKNYEKNLGPDS------VTIKLNLTSPIDDPVATLKLST 930

Query: 332  SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
             LQ+    N + L   K +     G  +       E +       +++    +H +  L 
Sbjct: 931  KLQT----NRMWLYNAKNKITHYAGPTQIIQEHARERLKLYEASRISQIEKASHKMDLLN 986

Query: 392  IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
              +  + E +                 +          L + +  + Y   ++   YL++
Sbjct: 987  NKIRYIMEFIE---------------GKIKIGKMSTSSLNEYLAQNGYLRSNNSFRYLTD 1031

Query: 452  VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDE 511
                   ++   +LT    D +RN++ ++  +I    +  +++  +       L    DE
Sbjct: 1032 -------DISTGQLTTDNVDKLRNQIRNITTDIDALRETTANK--MWITDLNALRKEVDE 1082

Query: 512  LDTPRRTRIV 521
                R T + 
Sbjct: 1083 YIVERLTPLD 1092


>gi|16923696|gb|AAL31544.1|AF435074_9 DNA gyrase A [Corynebacterium glutamicum]
          Length = 140

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVS 857
           +F+L  +  G+GKRT   D+    R G G+     +   + G LV+   V ++D+I  ++
Sbjct: 1   EFLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTP--KRGRLVSAIAVEEDDEIFAIT 58

Query: 858 DKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAES 908
             G ++R  V +IR +SRAT GV + +  +   ++++++  E +    AE+
Sbjct: 59  SAGGVVRTEVKQIRPSSRATMGVRLVNLEEGVELLAIDKNVEDQGEASAEA 109



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 647 YVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD---SRDEILSVETCTQENDILLTTKLG 703
           +++ AT  G  +R  L D+    R G   +       R  ++S     ++++I   T  G
Sbjct: 2   FLLVATSGGYGKRTPLEDYSTQGRGGLGVVTFKYTPKRGRLVSAIAVEEDDEIFAITSAG 61

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAI-VLHADADYDERICYMKHMSAQR 762
             VR  +  IR  + R ++GVR ++L +G +++++   V        E +          
Sbjct: 62  GVVRTEVKQIRP-SSRATMGVRLVNLEEGVELLAIDKNVEDQGEASAEAVAKGAVEGPAS 120

Query: 763 RLISGDTEEITSLKNDSSVE 782
           +  + +T+ + +  +++  E
Sbjct: 121 KTAAEETDSVDNGSDENGEE 140


>gi|8248355|gb|AAF74159.1|AF246740_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score =  141 bits (354), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEMAGYLLQDI 72


>gi|8248335|gb|AAF74149.1|AF246730_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248343|gb|AAF74153.1|AF246734_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248349|gb|AAF74156.1|AF246737_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  141 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 55/72 (76%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY+A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYNAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|308445289|gb|ADO32830.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  141 bits (354), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDNSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|315286960|ref|ZP_07872182.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
 gi|313630887|gb|EFR98581.1| DNA gyrase subunit A [Listeria ivanovii FSL F6-596]
          Length = 75

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 54/73 (73%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
          E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGLKPVHRRIL+ M  +G+  +K
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDK 62

Query: 70 KYVKCARISGEVM 82
           Y K ARI GEV+
Sbjct: 63 AYKKSARIVGEVI 75


>gi|8248341|gb|AAF74152.1|AF246733_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248345|gb|AAF74154.1|AF246735_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248347|gb|AAF74155.1|AF246736_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|255022892|ref|ZP_05294878.1| DNA topoisomerase IV subunit A [Listeria monocytogenes FSL J1-208]
          Length = 303

 Score =  140 bits (353), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 91/316 (28%), Positives = 157/316 (49%), Gaps = 33/316 (10%)

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
              G R+ +ELK+ A+A+ +LN L++ T LQ  ++ NMVA+N  +PE   +I +L A++ 
Sbjct: 19  SLTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMVAINKKRPELMGIIPMLDAYIE 78

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            ++E++ +R++Y + KAR R H+L GL  A++ LDEV+++IR S +   A+         
Sbjct: 79  HQKEIITKRSEYDIRKARARQHILEGLIKALSILDEVIKLIRGSKDKRDAK--------- 129

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                            +        SE Q  AI+ L+L RLT     ++++E  SL  +
Sbjct: 130 -----------------LNLQTNYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQ 172

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIV--EGLLDMEDEDCIVREDMVVT 541
           I     IL   + L+ ++K+EL  +K +  T RRT +      + ++ E  +  ED++V+
Sbjct: 173 ISVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVS 232

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           V+  GYVKR     Y A          + M++ D    +  +++  S+L F+S G     
Sbjct: 233 VTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYR 287

Query: 602 KVWRLPIGSPQARGKA 617
            V  LP    +  G  
Sbjct: 288 PVHELPDIRWKNLGDH 303



 Score = 39.8 bits (91), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +  L     +  T+ + +   E    +   + L   E  I++V+++G+ KRTS   +  S
Sbjct: 191 KEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS 250

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           N +     A       E    + +  +N  D ++L + KG  I  PV+E+ 
Sbjct: 251 NGAEL---AMK-----EADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 293


>gi|308445281|gb|ADO32826.1| ParC [Neisseria gonorrhoeae]
 gi|308445283|gb|ADO32827.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  140 bits (353), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/60 (65%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHGN++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGNSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248325|gb|AAF74144.1|AF246725_1 DNA topoisomerase IV subunit C [Streptococcus mitis]
          Length = 72

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDISIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|8248329|gb|AAF74146.1|AF246727_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|284027743|gb|ADB66698.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 81

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 54/79 (68%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           + M     EWN+   K AR+ G+V+GKY+PHG+ A+YD +  MAQ +S R +L++GQGNF
Sbjct: 3   YAMNIKANEWNEAKEKSARVVGDVIGKYNPHGDFAVYDNIVLMAQPFSQRYMLVDGQGNF 62

Query: 118 GSVDGDPPAAERYTECRLQ 136
           G +DGD  AA R TE RL 
Sbjct: 63  GCIDGDSAAAVRKTELRLA 81


>gi|112383322|gb|ABI17801.1| topoisomerase IV [Streptococcus suis]
 gi|112383324|gb|ABI17802.1| topoisomerase IV [Streptococcus suis]
 gi|112383326|gb|ABI17803.1| topoisomerase IV [Streptococcus suis]
 gi|112383328|gb|ABI17804.1| topoisomerase IV [Streptococcus suis]
 gi|112383330|gb|ABI17805.1| topoisomerase IV [Streptococcus suis]
 gi|112383332|gb|ABI17806.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 55/72 (76%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|8248339|gb|AAF74151.1|AF246732_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
 gi|8248351|gb|AAF74157.1|AF246738_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|4545087|gb|AAD22387.1| DNA gyrase A [Serratia marcescens]
          Length = 60

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MSVLGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|308445277|gb|ADO32824.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|8248337|gb|AAF74150.1|AF246731_1 DNA topoisomerase IV subunit C [Streptococcus oralis]
          Length = 72

 Score =  139 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEIAGYLLQDI 72


>gi|254570861|ref|XP_002492540.1| Essential type II topoisomerase [Pichia pastoris GS115]
 gi|238032338|emb|CAY70361.1| Essential type II topoisomerase [Pichia pastoris GS115]
          Length = 1344

 Score =  139 bits (351), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 141/393 (35%), Gaps = 69/393 (17%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            + I+D +    + +++   + R+IP + DG KP  R+IL+G  +  +      +K ++++
Sbjct: 720  IPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLRSE---IKVSQLA 775

Query: 79   GEVMGK---YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYT 131
            G  +G+   YH HG+ ++  ++  +AQD+  S  L L++  G FGS    G   +A RY 
Sbjct: 776  GY-IGEHSAYH-HGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGGKDASAARYI 833

Query: 132  ECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
               L K                  N+                       GI  G +TNIP
Sbjct: 834  FTDLSKITKK--------------NF--------------------SCQGIGTGWSTNIP 859

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
              N  ++V     ++D  +++   ++               G  G             + 
Sbjct: 860  PFNPVDIVANIRRLMDGQEME--EMIPWY-----------RGWNGSIT--KISADKFRME 904

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV--REKRIVDIADLRDESDRQGYR 309
            G         D E I +TEIP +     M E +   +   EK+   I D+ +E      +
Sbjct: 905  GNIE----QIDDETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDM-EEQHGMDLK 959

Query: 310  VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVV 369
             VI L +      +   L     L +  +V  +       +      + +    +    +
Sbjct: 960  FVITLTKEEMKKSLQMGLKERFKLITTINVGNMVAFDAAGKIKKYDNVNEIIEDYYHVRL 1019

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVR 402
                +   + A    + L  ++     +  ++ 
Sbjct: 1020 DFYQRRKDHLAEVLGNQLEKISSQARFVKMIIE 1052


>gi|313192278|emb|CBY05947.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 108

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 99  RMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYD 158
           RMAQ +SLR +L++GQGNFGS+DGD  AA RYTE RL K AH L+ DL K+TVDF  NYD
Sbjct: 47  RMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD 106

Query: 159 GS 160
           G+
Sbjct: 107 GN 108


>gi|284027749|gb|ADB66700.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica]
          Length = 90

 Score =  139 bits (349), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 59/89 (66%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           +L  M  +G +WN+ Y K A + G V+GK+HPH + A Y    RMAQ  SLR +L+EGQG
Sbjct: 2   VLCAMNVLGKDWNEAYKKSALVVGNVIGKFHPHADFAGYYTNVRMAQPSSLRYMLVEGQG 61

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLD 144
            +G++DGD  AA R++E RL + AH L+ 
Sbjct: 62  TYGTIDGDSAAAMRFSEIRLARIAHGLMA 90


>gi|326804513|ref|YP_004327384.1| hypothetical protein Vi01_013 [Salmonella phage Vi01]
 gi|301795163|emb|CBW37881.1| Topoisomerase IIM [Salmonella phage Vi01]
          Length = 467

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 141/393 (35%), Gaps = 57/393 (14%)

Query: 33  AINVILG-RAIPDLRDGLKPVHRRILFGMMQ---------MGVEWNKKYV-KCARISGEV 81
           A +V    R IP L D LKP  R+ILF  ++         +G+    +   K     GE 
Sbjct: 42  AFSVFNSIRQIPQLIDSLKPSQRKILFTALEYGKEEIVDRLGMFAAARTNYKSG---GEN 98

Query: 82  MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
           MG             +  MAQ +  +  +   +  G FGS+ G   ++ RY    +    
Sbjct: 99  MGN-----------TIVNMAQAFPGTNNIPYFDRDGQFGSIMGRDASSARYISVSVSDVI 147

Query: 140 HFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEV 198
             +     +  +D+  NY G  Q EP       P  LVNG  GI  G +T+ P H +  V
Sbjct: 148 RKIFRKEDEGILDY--NYLGEEQLEPKFFLPVIPMFLVNGINGIGSGYSTDTPCHCVKSV 205

Query: 199 VDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEK 258
           +    A++   D            P +       G T    AY+ G    +     HI +
Sbjct: 206 LSALRALLRGEDPTDLK-------PYWNGYKGETGYTEEGRAYSRGIFKRINATTLHITE 258

Query: 259 TSGDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
                      T++   + KA +               + +  +++   G+ + +  KRG
Sbjct: 259 VPIGWFAKSYETKVLLPLYKAGL---------------LTEYANDTTEDGWDITVVFKRG 303

Query: 318 ASADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKY 375
             + +   Q+ +   L S       A +             +L +F  +R      R +Y
Sbjct: 304 ELSKLDDAQIEQMFKLYSANKPVWTAWDEDGVIRRYSGWKEMLLSFFNYRLIRYEDRRQY 363

Query: 376 LLNKARDRAHV--LVGLAIAVANLDEVVRIIRF 406
           LL +  D+ H      L I+ A + ++ R I  
Sbjct: 364 LLKEMTDKIHRLNNRALFISWAVVTDMRRSITE 396


>gi|112383354|gb|ABI17817.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|308445291|gb|ADO32831.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  138 bits (348), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 49/60 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDSSAYEAMGRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|157890137|dbj|BAF81267.1| topoisomerase IV, A subunit [Pseudomonas putida]
          Length = 68

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           I++ M ++G++ + K+ K AR  G+V+GK+HPHG+ A Y+A+  MAQ +S R  L++GQG
Sbjct: 1   IVYAMSELGLDADAKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYTLVDGQG 60

Query: 116 NFGSVDGDP 124
           N+G+ D DP
Sbjct: 61  NWGAPD-DP 68


>gi|328697364|ref|XP_003240317.1| PREDICTED: DNA topoisomerase 2-like [Acyrthosiphon pisum]
          Length = 333

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 38/330 (11%)

Query: 56  ILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLI 111
           +LF  ++     +K+ +K A+++G V     YH HG  ++   +  +AQ++  S  + L+
Sbjct: 9   VLFTCIK---RNDKREIKVAQLAGSVAEHSAYH-HGEVSLMSTIVNLAQNYVGSNNINLL 64

Query: 112 EGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLC 168
           +  G FG+    G   A+ RY    L      +        + +  + D    EPV  + 
Sbjct: 65  QPIGQFGTRLQGGKDAASPRYIFTMLSPLTRLIFHPHDDPLLTYLRD-DNQKIEPVWYMP 123

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
              P VLVNG  GI  G  T IP HN  EV+     ++   D            P  P  
Sbjct: 124 I-IPMVLVNGAEGIGTGWMTKIPNHNPREVISNIKRMLRGED----------PLPMKPWY 172

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA--E 286
               G     +                 E       ++ +TE+P  V      E +    
Sbjct: 173 KNFTGHIEKLSEQKFISSG---------ELGVIGHNRVEITELPVGVWTQNYKESVLEPM 223

Query: 287 LVREKRIVD-IADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFS-VNMVAL 344
           L   ++    I D ++ +     + VI +            ++++  L +     +M A 
Sbjct: 224 LTDTEKSPAVITDYKEYNTDTTIKFVITMNPEKLQKAENEGIHKFFKLHASIGLTSMCAF 283

Query: 345 NGYKP--ERFTLIGILKAFVAFREEVVVRR 372
           +      +      IL+ F A R +   +R
Sbjct: 284 DKDCVLKKYEATQQILREFYAVRLDFYGKR 313


>gi|308445273|gb|ADO32822.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 47/60 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHPHG+   Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|4545077|gb|AAD22382.1| DNA gyrase A [Escherichia coli]
 gi|4545079|gb|AAD22383.1| DNA gyrase A [Klebsiella pneumoniae]
          Length = 60

 Score =  138 bits (347), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|112383338|gb|ABI17809.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 55/72 (76%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEVA 60

Query: 140 HFLLDDLGKDTV 151
            +LL+D+ K TV
Sbjct: 61  GYLLEDIEKKTV 72


>gi|112383334|gb|ABI17807.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  138 bits (346), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|3152658|gb|AAC17107.1| topoisomerase IV subunit A [Citrobacter freundii]
          Length = 69

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M ++G+  + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+
Sbjct: 1   MSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60

Query: 120 VDG-DPPAA 127
            D     AA
Sbjct: 61  PDNPKSFAA 69


>gi|4545081|gb|AAD22384.1| DNA gyrase A [Klebsiella oxytoca]
          Length = 60

 Score =  137 bits (345), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 60  MMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
           M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   MNVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGS 60


>gi|8248353|gb|AAF74158.1|AF246739_1 DNA topoisomerase IV subunit C [Streptococcus sanguinis]
          Length = 72

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           A+  G +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE R
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYYAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 60

Query: 135 LQKAAHFLLDDL 146
           L + A +LL D+
Sbjct: 61  LSEMAGYLLQDI 72


>gi|218677322|ref|ZP_03525219.1| DNA topoisomerase IV subunit A [Rhizobium etli CIAT 894]
          Length = 78

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 51/78 (65%)

Query: 6  ISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGV 65
          +     ++  I  V +   ++  YL YA++ I+ RA+PD+RDGLKPVHRRI++ M +MG+
Sbjct: 1  MPPSGGDDDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGL 60

Query: 66 EWNKKYVKCARISGEVMG 83
               + KCA+I GEVMG
Sbjct: 61 RPTSAFKKCAKIVGEVMG 78


>gi|308445295|gb|ADO32833.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+ GE++GKYHP G+++ Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVGEILGKYHPRGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|112383340|gb|ABI17810.1| topoisomerase IV [Streptococcus suis]
 gi|112383342|gb|ABI17811.1| topoisomerase IV [Streptococcus suis]
 gi|112383344|gb|ABI17812.1| topoisomerase IV [Streptococcus suis]
 gi|112383346|gb|ABI17813.1| topoisomerase IV [Streptococcus suis]
 gi|112383348|gb|ABI17814.1| topoisomerase IV [Streptococcus suis]
 gi|112383350|gb|ABI17815.1| topoisomerase IV [Streptococcus suis]
 gi|112383352|gb|ABI17816.1| topoisomerase IV [Streptococcus suis]
 gi|112383356|gb|ABI17818.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|18481444|gb|AAL73447.1|AF435418_1 DNA topoisomerase IV subunit C [Aeromonas caviae]
 gi|18481448|gb|AAL73449.1|AF435420_1 DNA topoisomerase IV subunit C [Aeromonas sobria]
 gi|298104542|gb|ADI55011.1| DNA topoisomerase IV subunit C [Aeromonas caviae]
          Length = 68

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDP 124
           + D DP
Sbjct: 61  APD-DP 65


>gi|313638139|gb|EFS03398.1| DNA topoisomerase IV, A subunit [Listeria seeligeri FSL S4-171]
          Length = 296

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 132/345 (38%), Gaps = 57/345 (16%)

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
             + M++ D    +  +++  S+L F+S G      V  LP    +  G  + ++ S   
Sbjct: 7   KELAMKEADHAIFIKKMNSLESLLLFTSKGNFIYRPVHELPDIRWKNLGDHVSHLASDLS 66

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEIL 685
                      +  +       +F TK+G  +++ ++++     S   +A+KL   DE+L
Sbjct: 67  AGEEIR--SVIDIPTFTEEHRFLFVTKNGMTKQSLITNYKPQRYSKSMMAIKLKDDDELL 124

Query: 686 SVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHAD 745
           +V       DI L TK G  +R+PI+ I     R + GV+ I+L + D+V+   ++   D
Sbjct: 125 NVHLIDGTEDIFLATKNGYGLRYPITEIPESGARTA-GVKAINLKQDDKVVGGIVLSLND 183

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
                                                               + IL  ++
Sbjct: 184 P---------------------------------------------------KHILLATQ 192

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G  K+  + +F   +R+ +G+      K N     + +   ++ D + + ++   ++ +
Sbjct: 193 RGSLKQMKASEFEPISRAKRGLLMLRELKNNPH-RFIGITLADNKDHLFIETNTDQIVEI 251

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
            V  +R+  R + G  +     +   VS+  +   EI D  +S E
Sbjct: 252 DVANLRVTDRYSNGSFVLDETMEGEPVSI-WLDIPEIKDTTDSKE 295


>gi|116282956|gb|ABJ97453.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 61

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 43/60 (71%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           YHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE RL   A  LL 
Sbjct: 1   YHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLS 60


>gi|6094496|sp|O24308|TOP2_PEA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase
            II; AltName: Full=PsTopII
 gi|2330651|emb|CAA74891.1| topoisomerase II [Pisum sativum]
          Length = 1462

 Score =  137 bits (344), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 131/344 (38%), Gaps = 36/344 (10%)

Query: 56   ILFGMMQM-GVEWNKKYV--KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRL 108
            ILF    + G    K Y   K A+  G V     YH HG  ++   +  MAQD+  S  +
Sbjct: 679  ILFSRADLFGSFKKKLYKEIKVAQFIGYVSEHSAYH-HGEQSLASTIIGMAQDFVGSNNI 737

Query: 109  LLIEGQGNFG--SVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP-V 165
             L++  G FG  ++ G   A+ RY    L      L  +     +++  N DG   EP  
Sbjct: 738  NLLKPNGQFGTCNLGGKDHASARYIYTELSPVTRCLFHEHDDKLLEY-LNEDGKSIEPNW 796

Query: 166  VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDF 225
             +    P VLVNG  GI  G ++ IP +N  E++     +++  ++         +G   
Sbjct: 797  YMPI-IPLVLVNGSEGIGTGWSSYIPNYNPREIIANVRRLLNGEELVPMDP--WYKG--- 850

Query: 226  PTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIA 285
                    R  I+ +   G    ++ G         D +   +TE+P +       + + 
Sbjct: 851  -------FRGTIEKSAKEG--GYIVNGTVT----EIDEQTFRITELPIRKWTQDYKQFLE 897

Query: 286  ELVR---EKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMV 342
             +       +   I D R   D     + I++K    A ++   L++   L S  S + +
Sbjct: 898  SITDGAPNVKDPLIEDFRQNGDDAIVDIEIKMKPEKIATILQEGLFKKFKLTSTISTSNM 957

Query: 343  ALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
             L   +   +  T   IL+ F   R +   +  +Y+L       
Sbjct: 958  HLFDAEGNKKFDTPEQILEEFFPLRLDYYEKSKEYILGNLNRLL 1001


>gi|112383336|gb|ABI17808.1| topoisomerase IV [Streptococcus suis]
          Length = 72

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAA 139
            +MG +HPHG+++IY A+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A
Sbjct: 1   NIMGNFHPHGDSSIYHAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEMA 60

Query: 140 HFLLDDLGKDTV 151
            +LL D+ K TV
Sbjct: 61  GYLLADIEKKTV 72


>gi|183987568|gb|ACC65774.1| topoisomerase II [Sarcomyxa serotina]
          Length = 696

 Score =  136 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 12/180 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  ++ +    + +++   + R+IP + DGLKP  R +++   +  +   KK +
Sbjct: 523 DHRLEEIPYSEFINKELILFSMADNI-RSIPSVADGLKPGQREVIWACFKRKL---KKEI 578

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G V     YH HG A++   +  +AQD+  S  + L+   G +G+ D  G   A
Sbjct: 579 KVAQLVGYVSEHAAYH-HGEASLAATIVSLAQDFVGSNNVNLLSPNGQYGTRDQGGKDHA 637

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           A RY    L      L        +  + + D    EP       P VLVNG  GI  G 
Sbjct: 638 APRYIFTDLPPLTRALYHPSDDPLLAVQKD-DNLVIEPEYYVPVIPLVLVNGAEGIGTGW 696


>gi|47420000|gb|AAT27352.1| DNA gyrase A [Campylobacter fetus]
          Length = 248

 Score =  136 bits (342), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 104/274 (37%), Positives = 162/274 (59%), Gaps = 26/274 (9%)

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
           KR A ++++LN L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT 
Sbjct: 1   KRDAMSEIVLNNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRTI 60

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L KAR RAH+L GL IA+ N+D V+ +I+ S +  +AR  LM +              
Sbjct: 61  FELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK-------------- 106

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSR 494
                         LSE+Q+ AIL++RL++LTGL R+ +  EL  +   I++   IL S 
Sbjct: 107 ------------FGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSE 154

Query: 495 SRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLS 554
           + +  II+ ELL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP  
Sbjct: 155 TLIENIIRDELLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSK 214

Query: 555 VYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTS 588
            Y  Q+RGGKG+  V   D+DF+   F   +H +
Sbjct: 215 SYEKQKRGGKGKVAVTTYDDDFIESFFTCMSHDT 248



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D ++++   + + +   + + G   +F +S ++      S  +  + L+     
Sbjct: 78  IALDNIDAVINLIKTSADTN---SARDGLMAKFGLSELQ------SNAILDMRLSKLTGL 128

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +  +L      D  +     +    R    + +        + +  +  +  
Sbjct: 129 EREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDID 188

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      +
Sbjct: 189 VEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDD 235


>gi|18175495|gb|AAL60062.1| DNA gyrase subunit A [Yersinia enterocolitica]
 gi|297374128|emb|CBL88422.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374130|emb|CBL88423.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374132|emb|CBL88424.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374134|emb|CBL88425.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374136|emb|CBL88426.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374138|emb|CBL88427.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374140|emb|CBL88428.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374142|emb|CBL88429.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374144|emb|CBL88430.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374146|emb|CBL88431.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374148|emb|CBL88432.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374150|emb|CBL88433.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374152|emb|CBL88434.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374154|emb|CBL88435.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374156|emb|CBL88436.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374158|emb|CBL88437.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374160|emb|CBL88438.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374162|emb|CBL88439.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374164|emb|CBL88440.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374172|emb|CBL88444.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374174|emb|CBL88445.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374176|emb|CBL88446.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374178|emb|CBL88447.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374180|emb|CBL88448.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374182|emb|CBL88449.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374184|emb|CBL88450.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374186|emb|CBL88451.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374188|emb|CBL88452.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374190|emb|CBL88453.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374192|emb|CBL88454.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374194|emb|CBL88455.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374196|emb|CBL88456.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374198|emb|CBL88457.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374200|emb|CBL88458.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374202|emb|CBL88459.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374204|emb|CBL88460.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374206|emb|CBL88461.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374208|emb|CBL88462.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374210|emb|CBL88463.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374212|emb|CBL88464.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374214|emb|CBL88465.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374216|emb|CBL88466.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374218|emb|CBL88467.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374220|emb|CBL88468.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374222|emb|CBL88469.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374224|emb|CBL88470.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374226|emb|CBL88471.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374228|emb|CBL88472.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374230|emb|CBL88473.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374232|emb|CBL88474.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374234|emb|CBL88475.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374236|emb|CBL88476.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374238|emb|CBL88477.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374240|emb|CBL88478.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374242|emb|CBL88479.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374244|emb|CBL88480.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374246|emb|CBL88481.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374248|emb|CBL88482.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374250|emb|CBL88483.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374252|emb|CBL88484.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374254|emb|CBL88485.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374256|emb|CBL88486.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374258|emb|CBL88487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374260|emb|CBL88488.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374262|emb|CBL88489.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374264|emb|CBL88490.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374266|emb|CBL88491.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374268|emb|CBL88492.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374270|emb|CBL88493.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374272|emb|CBL88494.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374274|emb|CBL88495.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374276|emb|CBL88496.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374278|emb|CBL88497.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
 gi|297374280|emb|CBL88498.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  135 bits (339), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 47/56 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|1498009|gb|AAB06321.1| DNA gyrase subunit A [Campylobacter sp.]
          Length = 59

 Score =  134 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 69  KKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
             Y K ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+R   ++GQGNFGS+DGD  
Sbjct: 3   SAYKKSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGA 59


>gi|109287964|ref|YP_654658.1| hypothetical protein MIV086L [Invertebrate iridescent virus 3]
 gi|123862744|sp|Q196X4|TOP2_IIV3 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|106073587|gb|ABF82116.1| hypothetical protein MIV086L [Aedes taeniorhynchus iridescent virus]
          Length = 1113

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 151/408 (37%), Gaps = 46/408 (11%)

Query: 10   EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
            +   + +  + I+D M +  + ++      R++    DG K   R+I++ + +     + 
Sbjct: 665  DHHREAVIDLKISDFMHHEMIKFS-YEDCRRSLASCIDGFKESQRKIIYAVRKKFRSNST 723

Query: 70   KYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGD 123
            +++K A++SG V  +  Y  HG   + + + + AQD+  +  + L+E  G FG+    G 
Sbjct: 724  EFIKVAQLSGYVAEQTDY-KHGEQNLCETIVKFAQDFVGANNVQLLEPDGQFGTRLEGGK 782

Query: 124  PPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIA 183
              AA RY   +  K   ++  +     ++       S  EPV      P VLVNG  GI 
Sbjct: 783  DSAAPRYIYTKPHKILPYIFREEDDPILEQS-----SEGEPVHFVPIIPLVLVNGSVGIG 837

Query: 184  VGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYAT 243
             G +  +P +N  E++    A + + D +          P  P      G+       AT
Sbjct: 838  TGWSCFVPQYNPLELIRYIEARLTSQDSEAL-------LPAKPWYRNFTGKVA-----AT 885

Query: 244  GRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDES 303
            G G     G         D + + VTE+P  +      ++   L+       +  L +ES
Sbjct: 886  GPGKFTTFGRMK----QVDADTVRVTELPVGMWTDRFKDQCYSLIESG---QLQQLVNES 938

Query: 304  DRQGYRVVIELKRGASADVILNQ-------LYRYTSLQSLFSVNMVALNGYKPERFTLIG 356
                    ++  +  SA  +          L+   ++ + +      L+           
Sbjct: 939  TVSKVDFTLKKLQDISALKLTTTLHTTNMVLFDRENVITKYDTIGDILD-------HYFQ 991

Query: 357  ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRII 404
               AF   R+   + + K  +     +   +  +    + L +    I
Sbjct: 992  TRLAFYKVRKNHTIAQLKNTIQHNETKLKFIEKVLTDHSFLRQDDAAI 1039


>gi|291335074|gb|ADD94703.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C23]
          Length = 417

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/343 (20%), Positives = 128/343 (37%), Gaps = 37/343 (10%)

Query: 4   HIISSDEEEEKGITSVSITDEMQNSYLTYAINVI--LGRAIPDLRDGLKPVHRRILFGMM 61
              ++ + +   I  + ++  +    + ++   I   GR+IP L DGLK   R++L+ + 
Sbjct: 92  DPDANVDIKTGSIVQMDLSQFINERMIHFS---IDDCGRSIPHLLDGLKESQRKVLYAVF 148

Query: 62  QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
           +  + +  K +K  +++G       YH HG   +YD +  +A D      +  +   G F
Sbjct: 149 KKKLSYKSKTLKVNQLAGFTAEHTGYH-HGEQCLYDTIINLATDIMGKNNIPYLYRDGQF 207

Query: 118 GSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVL 175
           GS    G   +A RY   +       L      + +  R   DG   EP       P  L
Sbjct: 208 GSRLDGGKDASAGRYIFTKEDMLTRKLFIPSDDNLLP-RNTDDGEPVEPRFYVPIIPTAL 266

Query: 176 VNGGG-GIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGR 234
           VNG   GI  G + ++P +N  ++V  C   I N    L  L    RG          G 
Sbjct: 267 VNGCQAGIGTGWSCSLPLYNPLDLVSSCKKWIKN--QTLPELSPWYRG--------FKGV 316

Query: 235 TGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIV 294
               +        ++ R            + + +TE+P  V        + +L+ +K I 
Sbjct: 317 ITRISPTKFSTSGLMER----------KNDTVTITELPIGVWTNKYKSFLEDLLEKKFIK 366

Query: 295 DIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
            +++    S  +  + VI+  R      + N     T   S  
Sbjct: 367 KLSNY---STPKEVKFVIKEHRNGMKCTMENLKLINTVTTSNM 406


>gi|47419984|gb|AAT27344.1| DNA gyrase A [Campylobacter jejuni]
          Length = 246

 Score =  134 bits (338), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 110/272 (40%), Positives = 165/272 (60%), Gaps = 26/272 (9%)

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           RVVIELKR A ++++LN L++ T+++S F V M+A++  +P+ F+L+ +L  F+  R+ V
Sbjct: 1   RVVIELKREAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTV 60

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           ++RRT + L KAR RAH+L GL IA+ N+DEV+ +I+ S +  TAR  L+ +        
Sbjct: 61  IIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK-------- 112

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECL 488
                               LSE+Q  AIL+++L RLTGL R+ I NEL  L  EI    
Sbjct: 113 ------------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLE 154

Query: 489 DILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYV 548
           +IL S + L  +I+ EL  ++ + D PR T+I +   D++ ED I  E+MVVT++H GY+
Sbjct: 155 EILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYI 214

Query: 549 KRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDL 580
           KRVP   Y  Q+RGGKG+  V   D+DF+   
Sbjct: 215 KRVPSKQYEKQKRGGKGKLAVTTYDDDFIESF 246



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 84  IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 134

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 135 EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 194

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            ++L   E  ++T++ +G+ KR  S  +    R GKG
Sbjct: 195 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKG 231


>gi|18481446|gb|AAL73448.1|AF435419_1 DNA topoisomerase IV subunit C [Aeromonas hydrophila]
          Length = 68

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M ++G+    K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   AMSELGLSALSKHKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWG 60

Query: 119 SVDGDP 124
           + D DP
Sbjct: 61  APD-DP 65


>gi|308445275|gb|ADO32823.1| ParC [Neisseria gonorrhoeae]
          Length = 60

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 47/60 (78%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           AR+  E++GKYHPHG+ + Y+A+ RMAQD++LR  LI+G GNFGS DGD  AA RYTE R
Sbjct: 1   ARVVREILGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEAR 60


>gi|123484430|ref|XP_001324264.1| topoisomerase II [Trichomonas vaginalis G3]
 gi|121907144|gb|EAY12041.1| topoisomerase II [Trichomonas vaginalis G3]
          Length = 1458

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 100/563 (17%), Positives = 188/563 (33%), Gaps = 100/563 (17%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            V     + +SY  Y       RAIP   DG KP  R+IL+  ++  ++ +   +K A++S
Sbjct: 676  VDKELILFSSYANY-------RAIPSSIDGWKPGQRKILWVCLKNNIKND---LKVAQLS 725

Query: 79   GEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTE 132
            G+V  +  YH HG A++ + +  M QD+  S  + + +  G  G+    G+   + RY  
Sbjct: 726  GKVSEQAAYH-HGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVY 784

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYD-GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              L+K    +      D + +  N D G   EPV      P VLVNG  GI VG ++ +P
Sbjct: 785  TALEKITRTIFMKEDDDLLTY--NTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVP 842

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             +   +++D     +++        M  +          I+    IK+           R
Sbjct: 843  QYCPQDIIDNLRRKMND------EPMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVKWESR 896

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL------------------------ 287
            G+        D   I +TE+P  +      + +  L                        
Sbjct: 897  GIVK----KIDDTTIEITELPIGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAKR 952

Query: 288  ----------------VREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                            V EK  +    I++ R+         +I +      ++    L 
Sbjct: 953  TKKKAAAGDDPVEQADVEEKVNLGGPKISEFREYHTNVSVHFIITVDDSQMREIESVGLR 1012

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             +  L+S  +   + L   + +       L     +    +    +              
Sbjct: 1013 EFFKLKSSITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQLQYK 1072

Query: 389  GLAIAVANLDEVVR-IIRFSPNPETARRELMQR-SWNASDIKDLIDLIDDSSYTIG---- 442
             L+     + EV+  II+ +  P       ++R +++  D K+L   I  +   I     
Sbjct: 1073 KLSNQARFIREVIAGIIKVNGVPRATILAALERGNYDLYDDKELTKRIKFADEVIQQHNE 1132

Query: 443  ------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                        +   + L E     +L +++  LT    D + +E      E+      
Sbjct: 1133 EEEEQNEFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQEL------ 1186

Query: 491  LSSRSRLLGIIKQELLSVKDELD 513
                  L            D+ +
Sbjct: 1187 ---EEMLKKKPIDFYKEDLDKFE 1206


>gi|218662255|ref|ZP_03518185.1| DNA gyrase subunit A [Rhizobium etli IE4771]
          Length = 125

 Score =  134 bits (336), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/84 (79%), Positives = 70/84 (83%)

Query: 815 YDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIAS 874
           YDFRIS R GKGIRATD SK  EIG LVA FPV+D DQI+LVSD G LIRVPV  IRIAS
Sbjct: 1   YDFRISGRGGKGIRATDTSKTGEIGELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIRIAS 60

Query: 875 RATKGVVIFSTAKDERVVSVERIR 898
           RATKGV IFSTAKDE+VVSVERI 
Sbjct: 61  RATKGVTIFSTAKDEKVVSVERIS 84



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 1/101 (0%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           E+++       + I+L +  GQ +R P+  IR  A R + GV   S AK ++V+S+  + 
Sbjct: 26  ELVAAFPVDDGDQIMLVSDGGQLIRVPVGGIR-IASRATKGVTIFSTAKDEKVVSVERIS 84

Query: 743 HADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEG 783
             + D  E        +      S     +         E 
Sbjct: 85  EPEEDETEEAVETAEGAPVAEEGSTGETPVADGDPTGPAEE 125


>gi|289064494|gb|ADC80569.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  134 bits (336), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|47420002|gb|AAT27353.1| DNA gyrase A [Campylobacter fetus]
          Length = 239

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 100/264 (37%), Positives = 154/264 (58%), Gaps = 26/264 (9%)

Query: 325 NQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRA 384
           N L++ T ++  F V M+A+N  +P+ F+L+ +LK F+  R+ V++RRT + L KAR RA
Sbjct: 1   NNLFKSTQMEVTFGVIMLAINNKEPKVFSLLELLKLFLNHRKTVIIRRTIFELQKARARA 60

Query: 385 HVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSD 444
           H+L GL IA+ N+D V+ +I+ S +  +AR  LM +                        
Sbjct: 61  HILEGLKIALDNIDAVINLIKTSADTNSARDGLMAK------------------------ 96

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
               LSE+Q+ AIL++RL++LTGL R+ +  EL  +   I++   IL S + +  II+ E
Sbjct: 97  --FGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDE 154

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           LL +K +   PR T IV+   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGK
Sbjct: 155 LLEIKSKFKCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGK 214

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTS 588
           G+  V   D+DF+   F   +H +
Sbjct: 215 GKVAVTTYDDDFIESFFTCMSHDT 238



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ D ++++   + + +   + + G   +F +S ++      S  +  + L+     
Sbjct: 68  IALDNIDAVINLIKTSADTN---SARDGLMAKFGLSELQ------SNAILDMRLSKLTGL 118

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +  +L      D  +     +    R    + +        + +  +  +  
Sbjct: 119 EREKLEAELKEILELIEKLDAILKSETLIENIIRDELLEIKSKFKCPRITDIVDDYDDID 178

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
            ++L   E  ++T++ +G+ KR  S  +    R GKG  A      +
Sbjct: 179 VEDLIPNENMVVTITHRGYIKRVPSKSYEKQKRGGKGKVAVTTYDDD 225


>gi|289064512|gb|ADC80578.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|28193545|emb|CAD56005.1| topoisomerase IV [Proteus mirabilis]
          Length = 64

 Score =  133 bits (334), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/65 (52%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  LI+GQGN+G+ D DP  
Sbjct: 1   SSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPD-DPKS 59

Query: 126 -AAER 129
            AA R
Sbjct: 60  FAAMR 64


>gi|289064496|gb|ADC80570.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 41/64 (64%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY+ L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYNTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|297374166|emb|CBL88441.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  132 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 47/56 (83%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y+ + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|3510609|gb|AAC33554.1| topoisomerase IV subunit A [Chlamydia trachomatis]
          Length = 97

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 8/101 (7%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
            ++D  +  +  YA  VIL RAIP + DGLKPV RR+L+ + +M    + K  K A I+G
Sbjct: 3   DLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
             M   HPHG+A I +AL  +A     +  LIE QGNFG+ 
Sbjct: 60  RTMA-LHPHGDAPIVEALVVLA----NKRFLIETQGNFGNP 95


>gi|289064492|gb|ADC80568.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYATLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|183987570|gb|ACC65775.1| topoisomerase II [Pleurotus citrinopileatus]
          Length = 709

 Score =  132 bits (332), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 536 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 591

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 592 KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 650

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 651 SPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 708

Query: 186 M 186
            
Sbjct: 709 W 709


>gi|183987580|gb|ACC65780.1| topoisomerase II [Pleurotus eryngii var. eryngii]
          Length = 680

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 507 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 562

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 563 KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 621

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 622 SPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 679

Query: 186 M 186
            
Sbjct: 680 W 680


>gi|183987572|gb|ACC65776.1| topoisomerase II [Pleurotus eryngii var. ferulae]
          Length = 692

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 634 SPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 691

Query: 186 M 186
            
Sbjct: 692 W 692


>gi|289064506|gb|ADC80575.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|297374168|emb|CBL88442.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 46/56 (82%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|183987584|gb|ACC65782.1| topoisomerase II [Pleurotus cornucopiae]
          Length = 692

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 634 SPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 691

Query: 186 M 186
            
Sbjct: 692 W 692


>gi|183987566|gb|ACC65773.1| topoisomerase II [Pleurotus pulmonarius]
          Length = 692

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  +    +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGEMSSSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 634 SPRYIFTEIAPLTRLLCHPADDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 691

Query: 186 M 186
            
Sbjct: 692 W 692


>gi|40804952|gb|AAR91744.1| topoisomerase II [Trichomonas vaginalis]
          Length = 1458

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 99/563 (17%), Positives = 186/563 (33%), Gaps = 100/563 (17%)

Query: 19   VSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARIS 78
            V     + +SY  Y       RAIP   DG KP  R+IL+  ++  ++ +   +K A++S
Sbjct: 676  VDKELILFSSYANY-------RAIPSSIDGWKPGQRKILWVCLKNNIKND---LKVAQLS 725

Query: 79   GEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTE 132
            G+V  +  YH HG A++ + +  M QD+  S  + + +  G  G+    G+   + RY  
Sbjct: 726  GKVSEQAAYH-HGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGSPRYVY 784

Query: 133  CRLQKAAHFLLDDLGKDTVDFRPNYD-GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIP 191
              L+K    +      D + +  N D G   EPV      P VLVNG  GI VG ++ +P
Sbjct: 785  TALEKITRTIFMKEDDDLLTY--NTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWSSEVP 842

Query: 192  THNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIR 251
             +   +++D     +++        M  +          I+    IK+           R
Sbjct: 843  QYCPQDIIDNLRRKMND------EPMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVKWESR 896

Query: 252  GVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAEL------------------------ 287
            G+        D   I +TE    +      + +  L                        
Sbjct: 897  GIVK----KIDDTTIEITEFTNGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAKR 952

Query: 288  ----------------VREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILNQLY 328
                            V EK  +    I++ R+         +I +      ++    L 
Sbjct: 953  TKKKAAAGDDPVEQADVEEKVNLGGPKISEFREYHTNVSVHFIITVDDSQMREIESVGLR 1012

Query: 329  RYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
             +  L+S  +   + L   + +       L     +    +    +              
Sbjct: 1013 EFFKLKSSITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQLQYK 1072

Query: 389  GLAIAVANLDEVVR-IIRFSPNPETARRELMQR-SWNASDIKDLIDLIDDSSYTIG---- 442
             L+     + EV+  II+ +  P       ++R +++  D K+L   I  +   I     
Sbjct: 1073 KLSNQARFIREVIAGIIKVNGVPRATILAALERGNYDLYDDKELTKRIKFADEVIQQHNE 1132

Query: 443  ------------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDI 490
                        +   + L E     +L +++  LT    D + +E      E+      
Sbjct: 1133 EEEEQNEFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQEL------ 1186

Query: 491  LSSRSRLLGIIKQELLSVKDELD 513
                  L            D+ +
Sbjct: 1187 ---EEMLKKKPIDFYKEDLDKFE 1206


>gi|289064498|gb|ADC80571.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+A+IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYHTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|183987588|gb|ACC65784.1| topoisomerase II [Pleurotus cystidiosus]
          Length = 692

 Score =  132 bits (331), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      L        +  R   D    EP   L    P VLVNG  GI  G
Sbjct: 634 SPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYLPI-IPMVLVNGAEGIGTG 691

Query: 186 M 186
            
Sbjct: 692 W 692


>gi|289064510|gb|ADC80577.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 39/64 (60%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHGDVSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|289064500|gb|ADC80572.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  131 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPH +A+IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHADASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|91093533|gb|ABE11588.1| ParC [Escherichia coli]
          Length = 68

 Score =  131 bits (330), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQKAAH 140
           GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYTE RL K + 
Sbjct: 1   GKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSE 59

Query: 141 FLLDDLGKD 149
            LL +LG+ 
Sbjct: 60  LLLSELGQG 68


>gi|183987576|gb|ACC65778.1| topoisomerase II [Pleurotus columbinus]
          Length = 692

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 12/180 (6%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIDEIPFTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGEMSLSSTIVNLAQNYVGSNNINLLSPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
           + RY    +      L        +  R   D    EP       P VLVNG  GI  G 
Sbjct: 634 SPRYIYTEIAPLTRLLCHPSDDPLLK-RQTDDNLLVEPEWYSPIIPMVLVNGAEGIGTGW 692


>gi|297374170|emb|CBL88443.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica]
          Length = 57

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 46/56 (82%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           +G +WNK Y K AR+ G+V+GKYHPHG++A+Y  + RMAQ +SLR +L++GQGNFG
Sbjct: 2   LGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFG 57


>gi|4545085|gb|AAD22386.1| DNA gyrase A [Enterobacter cloacae]
          Length = 55

 Score =  131 bits (329), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 34/55 (61%), Positives = 46/55 (83%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGS 119
            +WNK Y K AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQGNFGS
Sbjct: 1   NDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGS 55


>gi|289064504|gb|ADC80574.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  131 bits (328), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDESIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|289064502|gb|ADC80573.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  131 bits (328), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 33/64 (51%), Positives = 40/64 (62%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPH +A+IYD L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAETMGNYHPHCDASIYDTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|289064508|gb|ADC80576.1| DNA gyrase A subunit [Mycobacterium tuberculosis]
          Length = 64

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/64 (50%), Positives = 39/64 (60%)

Query: 59  GMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            M   G   ++ + K AR   E MG YHPHG+ +IY  L RMAQ WSLR  L++GQGNFG
Sbjct: 1   AMFDSGFRPDRSHAKSARSVAEAMGNYHPHGDGSIYGTLVRMAQPWSLRYPLVDGQGNFG 60

Query: 119 SVDG 122
           S   
Sbjct: 61  SPGN 64


>gi|71842512|gb|AAZ43363.1| ParC [Escherichia coli]
          Length = 65

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G+ D DP  
Sbjct: 2   ASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKS 60

Query: 126 -AAER 129
            AA R
Sbjct: 61  FAAMR 65


>gi|2564211|emb|CAB17081.1| gyrase A [Acholeplasma laidlawii PG-8A]
          Length = 53

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/53 (66%), Positives = 44/53 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAA 127
           ARI G+VMGKYHPHG+++IY+A+ RMAQ +S R  L++G GNFGSVDGD  AA
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYNAMVRMAQPFSYRKPLVDGHGNFGSVDGDGAAA 53


>gi|47420008|gb|AAT27356.1| DNA gyrase A [Campylobacter lari]
          Length = 237

 Score =  129 bits (325), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 108/263 (41%), Positives = 160/263 (60%), Gaps = 26/263 (9%)

Query: 316 RGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKY 375
           R A ++++LN L++ T+++S F V M+A++  +P+ F+LI +L  F+  R+ V++RRT Y
Sbjct: 1   RDAMSEIVLNNLFKSTTMESTFGVIMLAIHNKEPKVFSLIELLNLFLNHRKTVIIRRTIY 60

Query: 376 LLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLID 435
            L KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+               
Sbjct: 61  ELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK--------------- 105

Query: 436 DSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRS 495
                        LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+    IL S +
Sbjct: 106 -----------FGLSELQSNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSET 154

Query: 496 RLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSV 555
            L  +IK EL  ++ + D PR T+I E   D++ ED I  E+MVVT++H GY+K VP   
Sbjct: 155 LLENLIKDELKEIRTKFDVPRITQIEEDYDDIDIEDLIPNENMVVTINHRGYIKXVPSKQ 214

Query: 556 YRAQRRGGKGRSGVVMRDEDFVT 578
           Y  Q+RGGKG+  V   D+DF+ 
Sbjct: 215 YEKQKRGGKGKVAVTTYDDDFIE 237



 Score = 41.7 bits (96), Expect = 0.60,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 74/199 (37%), Gaps = 19/199 (9%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIA----MKLDSRDEILSVETCTQENDILLTTKLG 703
           +    +   + R  + +  +      I     + LD+ DE++++   + +N    T K  
Sbjct: 45  LFLNHRKTVIIRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSPDN---PTAKNL 101

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLA-----KGDQVIS-MAIVLHADADYDERICYMKH 757
              +F +S ++      S  +  + L      + +++ + +  +L      D+ +     
Sbjct: 102 LMQKFGLSELQ------SNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSETL 155

Query: 758 MSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDF 817
           +    +    +      +   + +E +  +   ++L   E  ++T++ +G+ K   S  +
Sbjct: 156 LENLIKDELKEIRTKFDVPRITQIEEDYDDIDIEDLIPNENMVVTINHRGYIKXVPSKQY 215

Query: 818 RISNRSGKGIRATDVSKIN 836
               R GKG  A      +
Sbjct: 216 EKQKRGGKGKVAVTTYDDD 234


>gi|3767588|dbj|BAA33853.1| ParC subunit of DNA topoisomerase IV [Enterococcus faecalis]
          Length = 69

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 51/69 (73%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
           LF M + G  ++K + K A+  G +MG YHPHG+++IY+A+ R++QDW LR +LIE  GN
Sbjct: 1   LFSMNKDGNTFDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGN 60

Query: 117 FGSVDGDPP 125
            GS+DGDPP
Sbjct: 61  NGSMDGDPP 69


>gi|71842514|gb|AAZ43364.1| ParC [Escherichia coli]
          Length = 65

 Score =  129 bits (323), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 3/65 (4%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K AR  G+V+GKYHPHG+ A Y+A+  MAQ +S R  L++GQGN+G  D DP  
Sbjct: 2   ASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGVPD-DPKS 60

Query: 126 -AAER 129
            AA R
Sbjct: 61  FAAMR 65


>gi|50079973|gb|AAT69559.1| DNA gyrase [Acinetobacter baumannii]
          Length = 52

 Score =  128 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECR 134
           GKYHPH ++A+Y+ + RMAQD+SLR LL++GQGNFGS+DGD  AA RYTE R
Sbjct: 1   GKYHPHCDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVR 52


>gi|183987578|gb|ACC65779.1| topoisomerase II [Lyophyllum shimeji]
          Length = 692

 Score =  127 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 86/182 (47%), Gaps = 16/182 (8%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  ++ +    + +++   + R+IP + DGLKP  R++++   +  +   KK +
Sbjct: 519 DHRLEEIPYSEFINKELILFSMADNI-RSIPSVADGLKPGQRKVMWACFKRKL---KKEI 574

Query: 73  KCARISGEVMGK---YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPP 125
           K A++ G  +G+   YH HG  ++   +  +AQ++  S  L L++ +G +G+    G   
Sbjct: 575 KVAQLVGY-IGEQAAYH-HGEVSLAQTIVNLAQNFVGSNNLNLLDPRGQYGTREQGGKNH 632

Query: 126 AAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAV 184
           A+ RY   +    +  + +      ++ + + D    EP   +    P  L+NG  GI  
Sbjct: 633 ASPRYIFTQPMSISRVIFNPADDALLNAQKD-DNMVIEPEWYMPI-VPMTLINGAEGIGT 690

Query: 185 GM 186
           G 
Sbjct: 691 GW 692


>gi|28193551|emb|CAD56008.1| topoisomerase IV [Providencia stuartii]
          Length = 58

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 43/59 (72%), Gaps = 3/59 (5%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAER 129
           K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA R
Sbjct: 1   KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 58


>gi|312184024|gb|ADQ42775.1| DNA gyrase A [Acinetobacter baumannii]
          Length = 72

 Score =  127 bits (320), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 47/60 (78%)

Query: 103 DWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ 162
           D+SLR LL++GQGNFGS+DGD  AA RYTE R+ K AH LL DL KDTVD+  NYDGS +
Sbjct: 12  DFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDWEDNYDGSER 71


>gi|115534553|ref|NP_503483.2| hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
 gi|103472086|gb|AAF60626.2| Hypothetical protein Y46H3C.4 [Caenorhabditis elegans]
          Length = 616

 Score =  127 bits (320), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 25/182 (13%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGNAAIYDA 96
            R+IP L DG KP  R++LF   +     +K  VK A+++G V  M  YH HG  ++   
Sbjct: 79  ERSIPCLVDGFKPGQRKVLFACFK---RSDKHGVKVAQLAGGVADMSAYH-HGEQSLMTT 134

Query: 97  LARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPN 156
           +  +AQD+                 G   A+ +Y   +L      L      + + F   
Sbjct: 135 IVHLAQDY----------------GGKDSASAQYIFTQLSPVTRTLFPSHDDNVLRFL-- 176

Query: 157 YDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           Y+ + + EP   C   P VLVNG  GI  G  TNIP +N  E+V     +I        A
Sbjct: 177 YEENQRIEPEWYCPISPMVLVNGAQGIDTGWRTNIPNYNPRELVKNIKRLIAGEPQKALA 236

Query: 216 LM 217
             
Sbjct: 237 PW 238


>gi|282599189|ref|YP_003358501.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
 gi|226973495|gb|ACO94248.1| gp52 topoisomerase II medium subunit [Shigella phage phiSboM-AG3]
          Length = 446

 Score =  127 bits (319), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 79/383 (20%), Positives = 133/383 (34%), Gaps = 55/383 (14%)

Query: 35  NVILG-RAIPDLRDGLKPVHRRILFGMMQ---------MGVEWNKKYV-KCARISGEVMG 83
           +V+   R IP L D LKP  R+ILF  ++         +G+    +   K     GE M 
Sbjct: 23  SVVNSIRQIPQLIDSLKPSQRKILFAALEYNKEEIVDRLGMFAAARTNYKSG---GENMS 79

Query: 84  KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
                        +  MAQ +  +  +   +  G FGS+ G   ++ RY    +      
Sbjct: 80  -----------GTIVNMAQGFPGTNNIPYFDRDGQFGSIMGRDASSARYISVAVSDVIRK 128

Query: 142 LLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           +     +  +++  NY G  + EP       P  LVNG  GI  G +T+ P H +  V+ 
Sbjct: 129 IFRKEDEGILEY--NYLGEERLEPKFFLPILPMFLVNGINGIGTGYSTDTPCHCVKSVLS 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A++   D            P +       G T    AY+ G    V     HI +  
Sbjct: 187 ALRALLRGEDPKDLK-------PYWNGYKGETGYTEEGRAYSRGIFRRVNATTLHITEVP 239

Query: 261 GDREQ-IVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGAS 319
                    T++   + KA +               + +  +++   G+ + +  KRG  
Sbjct: 240 VGWFAKTYETKVLLPLYKAGI---------------LTEYANDTTEDGWDITVVFKRGEL 284

Query: 320 ADVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLL 377
           + +   Q+ +   L S       A +             +L  F  +R      R +YLL
Sbjct: 285 SKLSDEQVEQMFKLYSANKPVWTAWDEDGVIHRYAGWQDMLLPFFNYRLSRYEDRRQYLL 344

Query: 378 NKARDRAHVLVGLAIAVANLDEV 400
               DR   L   A+ +     V
Sbjct: 345 KDMADRIRKLGDRAVFIEWATRV 367


>gi|183987582|gb|ACC65781.1| topoisomerase II [Pleurotus salmoneostramineus]
          Length = 552

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 379 DHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRNL---KKEI 434

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG A++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 435 KVAQLVGYISEHAAYH-HGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHA 493

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      ++     D +  R   D    EP   +    P VLVNG  GI  G
Sbjct: 494 SPRYIFTEVSPLTR-MICHPEDDPLLKRQTDDNLLVEPEWYMPI-LPLVLVNGADGIGTG 551

Query: 186 M 186
            
Sbjct: 552 W 552


>gi|409090|dbj|BAA03132.1| DNA topoisomerase IIA [Rattus norvegicus]
          Length = 214

 Score =  126 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 29/217 (13%)

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
           A+++G V  M  YH HG  ++   +  +AQ++  S  L L++  G FG+    G   A+ 
Sbjct: 1   AQLAGSVAEMSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASP 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMA 187
           RY    L   A  L       T+ F   YD + + EP       P VL+NG  GI  G +
Sbjct: 60  RYIFTMLSPLARLLFPSKDDHTLRFL--YDDNQRVEPEWYILIIPMVLINGAEGIGTGWS 117

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
             IP  ++ EVV+    ++D  +            P  P+     G              
Sbjct: 118 CKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNYKGTIE-----ELASNQ 162

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
            VI G    E    +   I +TE+P +       E++
Sbjct: 163 YVING----EVAILNSTTIEITELPIRTWTQTYKEQV 195


>gi|1542969|gb|AAB08038.1| topoisomerase IV subunit; Method: conceptual translation supplied
           by author [Streptococcus pneumoniae]
          Length = 69

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 47/69 (68%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPV RRIL+ M +    ++K Y K A+  G +MG +HPHG+++IYDA+ RM+Q+W    +
Sbjct: 1   KPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEI 60

Query: 110 LIEGQGNFG 118
           L+E  GN G
Sbjct: 61  LVEMHGNNG 69


>gi|183987564|gb|ACC65772.1| topoisomerase II [Pleurotus abalonus]
          Length = 692

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  +  +D +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNIEEIPYSDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  S  + L++  G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGETSLAATIVNLAQNYVGSNNINLLKPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      +        +  R   D    EP   +    P VL+NG  GI  G
Sbjct: 634 SPRYIYTEVMPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPV-VPLVLINGAEGIGTG 691

Query: 186 M 186
            
Sbjct: 692 W 692


>gi|506869|dbj|BAA03133.1| DNA topoisomerase IIB [Rattus norvegicus]
          Length = 214

 Score =  126 bits (317), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 29/217 (13%)

Query: 75  ARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAE 128
           A+++G V  M  YH HG  A+   +  +AQ++  S  + L++  G FG+    G   A+ 
Sbjct: 1   AQLAGSVAEMSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASP 59

Query: 129 RYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMA 187
           RY    L   A  L   +  + + F   YD + + EP       P VL+NG  GI  G A
Sbjct: 60  RYIFTMLSSLARLLFPAVDDNLLKFL--YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWA 117

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
             +P ++  E+VD    +++  D            P  P      G          G+  
Sbjct: 118 CKLPNYDAREIVDNVRRMLEGLD----------PHPMLPNYKNFKG-----TIQELGQNQ 162

Query: 248 IVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKI 284
             + G    E    DR  +  TE+P +       E++
Sbjct: 163 YAVSG----EIFVVDRNTVETTELPVRTWTQVYKEQV 195


>gi|71842518|gb|AAZ43366.1| ParC [Escherichia coli]
          Length = 65

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP- 125
            + K+ K AR  G+V+GKYHPHG+ A Y A+  M Q +S R  L++GQGN+G+ D DP  
Sbjct: 2   ASAKFKKSARTVGDVLGKYHPHGDIACYGAMVLMVQPFSYRYPLVDGQGNWGAPD-DPKS 60

Query: 126 -AAER 129
            AA R
Sbjct: 61  FAAMR 65


>gi|312270883|gb|ADQ55849.1| topoisomerase II medium subunit [Escherichia phage PhaxI]
          Length = 446

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 139/395 (35%), Gaps = 55/395 (13%)

Query: 35  NVILG-RAIPDLRDGLKPVHRRILFGMMQ---------MGVEWNKKYV-KCARISGEVMG 83
           +V+   R IP L D LKP  R+ILF  ++         +G+    +   K     GE M 
Sbjct: 23  SVVNSIRQIPQLIDSLKPSQRKILFAALEYNKEEIVDRLGMFAAARTNYKSG---GENMS 79

Query: 84  KYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
                        +  MAQ +  +  +   +  G FGS+ G    + RY    + +    
Sbjct: 80  -----------GTIVNMAQGFPGTNNIPYFDRDGQFGSIMGREAPSARYISVAVSEVIRK 128

Query: 142 LLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           +        +++  NY G  + EP       P  LVNG  GI  G AT+ P H +  V+ 
Sbjct: 129 IFRKEDDGILEY--NYLGEEKLEPKFFLPILPMFLVNGINGIGSGYATDPPCHCVKSVLS 186

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
              A++   D            P +       G T    AY  G                
Sbjct: 187 ALRALLRGKDPKDLK-------PYWNGFKGETGYTEEGRAYCRGLFP------------R 227

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA 320
            +   + +TE+P          K+  L+   +   + +  +++   G+ + +  KRG  +
Sbjct: 228 VNATTLNITEVPIGWFSKTYETKV--LLPLYKAGVLTEYANDTTEDGWDITVVFKRGELS 285

Query: 321 DVILNQLYRYTSLQSLFSVNMVALNGYKP--ERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            +   Q+ +   L S       A +             +L  F  +R      R +YL+ 
Sbjct: 286 KLNDEQVEQMFRLYSANKPVWTAWDEDGVIHRYDGWKDMLLPFFNYRLSRYEDRRQYLIK 345

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETA 413
           +  D+ H L   AI +     V+  +R S     A
Sbjct: 346 ELTDKIHRLNNRAIFIGWA--VITDMRRSLTELKA 378


>gi|7682321|gb|AAF67217.1|AF144766_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682325|gb|AAF67219.1|AF144768_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682328|gb|AAF67220.1|AF144769_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682330|gb|AAF67221.1|AF144770_1 topoisomerase IV subunit A [Streptococcus sanguinis]
 gi|7682332|gb|AAF67222.1|AF144771_1 topoisomerase IV subunit A [Streptococcus mitis]
 gi|7682323|gb|AAF67218.1| topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 47/61 (77%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
            +HPHG+++IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 1   NFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60

Query: 144 D 144
            
Sbjct: 61  Q 61


>gi|183987590|gb|ACC65785.1| topoisomerase II [Pleurotus djamor]
          Length = 735

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 562 DHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRNL---KKEI 617

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG A++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 618 KVAQLVGYISEHATYH-HGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHA 676

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      +        +  R   D    EP   +    P VLVNG  GI  G
Sbjct: 677 SPRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPI-LPLVLVNGADGIGTG 734

Query: 186 M 186
            
Sbjct: 735 W 735


>gi|183987592|gb|ACC65786.1| topoisomerase II [Pleurotus flabellatus]
          Length = 701

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 14/181 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  TD +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 528 DHNLEEIPYTDFINKELILFSMADNI-RSIPSVADGLKPGQRKVIWGCFKRNL---KKEI 583

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG A++   +  +AQ++  S  + L+   G +G+ D  G   A
Sbjct: 584 KVAQLVGYISEHAAYH-HGEASLAATIINLAQNYVGSNNINLLMPNGQYGTRDQGGKDHA 642

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGGIAVG 185
           + RY    +      +        +  R   D    EP   +    P VLVNG  GI  G
Sbjct: 643 SPRYIFTEVSPLTRMICHPADDPLLK-RQTDDNLLVEPEWYMPI-LPLVLVNGADGIGTG 700

Query: 186 M 186
            
Sbjct: 701 W 701


>gi|323695906|gb|ADX99577.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 46/60 (76%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+ HPHG++++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  L
Sbjct: 1   GQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|50079975|gb|AAT69560.1| topoisomerase IV [Acinetobacter baumannii]
          Length = 58

 Score =  125 bits (313), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 43/59 (72%), Gaps = 3/59 (5%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYTECRLQ 136
           +V+GKYHPH ++A Y+A+  MAQ +S R  LIEGQGN+GS D DP   AA RYTE +L 
Sbjct: 1   DVLGKYHPHCDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPD-DPKSFAAMRYTEAKLS 58


>gi|294463058|gb|ADE77067.1| unknown [Picea sitchensis]
          Length = 183

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 43/199 (21%)

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           GR S G+  + L   D+V SM IV  A                                 
Sbjct: 14  GRKSRGLISMRLRGEDKVASMDIVPAA--------------------------------V 41

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE 837
              ++  +   + Q   +   ++L VSE G+GKR     FRI+     G+    +   + 
Sbjct: 42  QQELKNALLSSKSQGKTITAPWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDR 101

Query: 838 IGALVAVFPV--------NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
              + A+F V          ++Q++LVS  G + R+ V  I I SR  KGV +       
Sbjct: 102 ---VAALFVVGLSLSDDGESDEQVVLVSHSGMVNRIMVRAISIQSRTAKGVRLMRLEHGG 158

Query: 890 RVVSVERIRESEIVDEAES 908
           ++ SV  +  SE+  +   
Sbjct: 159 KIQSVSVVGPSEVQSDGPE 177



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 46/114 (40%), Gaps = 11/114 (9%)

Query: 646 LYVVFATKHGNVRRNKLSDFIQINRSGKIAM--KLDSRDEILSVETC--------TQEND 695
            +++  ++ G  +R  LS F          +  KL   D + ++             +  
Sbjct: 62  PWLLLVSESGYGKRVPLSSFRITPLKRVGLIGYKLLPEDRVAALFVVGLSLSDDGESDEQ 121

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYD 749
           ++L +  G   R  + AI     R + GVR + L  G ++ S+++V  ++   D
Sbjct: 122 VVLVSHSGMVNRIMVRAI-SIQSRTAKGVRLMRLEHGGKIQSVSVVGPSEVQSD 174


>gi|149393056|gb|ABR26590.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393058|gb|ABR26591.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393060|gb|ABR26592.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
 gi|149393062|gb|ABR26593.1| DNA gyrase subunit A [Sinorhizobium chiapanecum]
          Length = 176

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 32/86 (37%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     + +  +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797808|gb|ABO27423.1| DNA gyrase subunit A [Mesorhizobium plurifarium]
          Length = 176

 Score =  124 bits (310), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W + D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRTAPDPQTAREQLMERRWPSHDVAPLIKLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI + LDILSSR+R+  I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIADELNKIGAEIVDFLDILSSRARIQQIVKDELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT + EG  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+ 
Sbjct: 122 RRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGMS 176



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 733 DQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           D++   +  +     D+ + +     +    +       +       + +    ++   +
Sbjct: 77  DEIADELNKIGAEIVDFLDILSSRARIQQIVKDELIAVRDEFGTPRRTELSEGGADMEDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKG 171


>gi|89515135|gb|ABD75397.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     + A  +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|89515141|gb|ABD75400.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515143|gb|ABD75401.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  124 bits (310), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 140/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I +DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINADGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD++ +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEVGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGMA 176



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     + +  +       +       + +     +   +
Sbjct: 80  GDEL---NKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTPRRTEIAEGGPDMDDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKG 171


>gi|89515137|gb|ABD75398.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515139|gb|ABD75399.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515145|gb|ABD75402.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515147|gb|ABD75403.1| DNA gyrase subunit A [Ensifer mexicanus]
 gi|89515149|gb|ABD75404.1| DNA gyrase subunit A [Ensifer mexicanus]
          Length = 176

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 140/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I +DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINADGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKGRSGMA 176



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     + +  +       +       + +     +   +
Sbjct: 80  GDEL---NKIGEEIKDYLDILSSRLRIMSIVKQELEAVRDEFGTPRRTEIAEGGPDMDDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIAQEDMVVTVSHLGYIKRVPLATYRAQRRGGKG 171


>gi|126797786|gb|ABO27412.1| DNA gyrase subunit A [Sinorhizobium sp. Le39]
 gi|126797788|gb|ABO27413.1| DNA gyrase subunit A [Sinorhizobium sp. Lc56]
          Length = 176

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 108/175 (61%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQSAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMS 176



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|7682335|gb|AAF67223.1|AF144772_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 46/61 (75%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
            +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 1   NFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60

Query: 144 D 144
            
Sbjct: 61  Q 61


>gi|89515129|gb|ABD75394.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515131|gb|ABD75395.1| DNA gyrase subunit A [Sinorhizobium terangae]
 gi|89515133|gb|ABD75396.1| DNA gyrase subunit A [Sinorhizobium terangae]
          Length = 176

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINVDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+KQEL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     + A  +       +       + +     +   +
Sbjct: 80  GDEL---NKIGEEIKDYLDILSSRLRIMAIVKQELEAVRDEFGTPRRTEIAEGGPDMDDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|89515113|gb|ABD75386.1| DNA gyrase subunit A [Sinorhizobium fredii]
 gi|126797738|gb|ABO27388.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
          Length = 176

 Score =  123 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMS 176



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|89515111|gb|ABD75385.1| DNA gyrase subunit A [Sinorhizobium xinjiangense]
 gi|126797784|gb|ABO27411.1| DNA gyrase subunit A [Sinorhizobium sp. GRX8]
          Length = 176

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMS 176



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797780|gb|ABO27409.1| DNA gyrase subunit A [Sinorhizobium sp. BR816]
          Length = 176

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797782|gb|ABO27410.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234]
          Length = 176

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMS 176



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797748|gb|ABO27393.1| DNA gyrase subunit A [Sinorhizobium kostiense]
 gi|126797750|gb|ABO27394.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQSAREQLMERRWPAHDVDALIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797806|gb|ABO27422.1| DNA gyrase subunit A [Mesorhizobium mediterraneum]
          Length = 176

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 140/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W + D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRSAPDPQTAREQLMERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRL RLT LGRD+I +ELN++G EIK+ LDILSSR+R+  I+K EL +V+DE  TP
Sbjct: 62  AILELRLQRLTALGRDEIADELNTIGDEIKDYLDILSSRARIQQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT + EG  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+ 
Sbjct: 122 RRTELSEGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGMS 176



 Score = 52.5 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 733 DQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           D++   +  +     DY + +     +    +       +       + +    ++   +
Sbjct: 77  DEIADELNTIGDEIKDYLDILSSRARIQQIVKDELAAVRDEFGTPRRTELSEGGADMEDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKG 171


>gi|89515109|gb|ABD75384.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797734|gb|ABO27386.1| DNA gyrase subunit A [Sinorhizobium americanum]
 gi|126797736|gb|ABO27387.1| DNA gyrase subunit A [Sinorhizobium americanum]
          Length = 176

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|9957073|gb|AAG09201.1|AF175687_1 topoisomerase IV [Bacteroides fragilis]
          Length = 58

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            ++G+  + K+ K AR  G+V+GKYHPHG+ A Y+A+  MA  +S R  L++GQGN+G
Sbjct: 1   SELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAHPFSYRYPLVDGQGNWG 58


>gi|126797742|gb|ABO27390.1| DNA gyrase subunit A [Sinorhizobium fredii]
          Length = 176

 Score =  123 bits (308), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDSLIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.6 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELAAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|7682337|gb|AAF67224.1|AF144773_1 topoisomerase IV subunit A [Streptococcus oralis]
          Length = 61

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 46/61 (75%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
            +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL
Sbjct: 1   NFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLL 60

Query: 144 D 144
            
Sbjct: 61  Q 61


>gi|309357377|emb|CAP35657.2| hypothetical protein CBG_18156 [Caenorhabditis briggsae AF16]
          Length = 1207

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 100/553 (18%), Positives = 210/553 (37%), Gaps = 84/553 (15%)

Query: 2    TEHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
            ++ + ++++ E+   T ++  + + +  + + +   L R+IP L DGLKP  R+IL+ ++
Sbjct: 685  SDEVSTTEDVEK---TELNYEEFVNSQLMQFGMAD-LKRSIPSLIDGLKPSQRKILWTLL 740

Query: 62   QMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNF 117
            +M        +K ++++G V  +  YH HG  ++   + RM Q +  +  + L++  G F
Sbjct: 741  KMDETTE---MKVSQLAGAVAHRQSYH-HGEESLVRTIVRMGQTFCGASNMPLLQPIGQF 796

Query: 118  GS------VDGDPPAAERYTECR--------------------------LQKAAHFLL-- 143
            G+      +   PP   R++E R                          +      L   
Sbjct: 797  GTRHEVRVIMITPPHFLRFSEKRNNLEKNGKCHSIQHPKKPICPQNQVPVNPTTRLLFPI 856

Query: 144  --DDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDG 201
              DDL +  V+     +G   EP  LC   P +LVNG  GI  G +T +   N  +V+D 
Sbjct: 857  ADDDLLEKKVE-----EGITVEPNTLCPIIPLILVNGTEGIGTGWSTKVANRNPVDVID- 910

Query: 202  CVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSG 261
                +    IDL +L+     P +      +         +TG+  I        E+ + 
Sbjct: 911  ----MIRRKIDLSSLVVNEIPPFYEDYKGKIEIVTPTKFISTGKIKIS-----RPERKNA 961

Query: 262  DREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASA- 320
                + ++E+P  V  +   EK++ ++ +  I + ++   E  +  +R++ + K+ A   
Sbjct: 962  STFSVEISELPIGVWTSKYKEKLSNILEKLPITEFSERHTE-KQVNFRLIFDRKKAARFL 1020

Query: 321  DVILNQLYRYTSLQSLFSVNMVALNGYKPERF--TLIGILKAFVAFREEVVVRRTKYLLN 378
                + L  Y  L++  + N V  +     +    +  I   F   R+++  +R +    
Sbjct: 1021 QKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIANEFFEIRKDLYQKRLEIQKR 1080

Query: 379  KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
            +   +   +         ++  + ++       T   + M R      ++++   +D   
Sbjct: 1081 ECEAKLKYVNNQVHLYYYMN-FIELVTNG----TFELKSMDRESLELKLEEIGFEVDSMK 1135

Query: 439  YTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-----DIRNELNSLGIEIKECLDILSS 493
                              +LE+ L+RLT    +       R  L     E  +      S
Sbjct: 1136 TENSKKSNYG-------YLLEMPLSRLTLDEMNRLKERKSRRNLELKAAESADWKSTWHS 1188

Query: 494  RSRLLGIIKQELL 506
                L    ++  
Sbjct: 1189 ELDKLEESIKKTR 1201


>gi|262411032|gb|ACY66882.1| GyrA [Salmonella enterica]
          Length = 63

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 44/55 (80%)

Query: 54  RRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           RR+L+ M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD++ RMAQ +SLR 
Sbjct: 9   RRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQPFSLRY 63


>gi|89515127|gb|ABD75393.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797766|gb|ABO27402.1| DNA gyrase subunit A [Sinorhizobium saheli]
 gi|126797768|gb|ABO27403.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKDELGAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     +    +   G   +       + +     +   +
Sbjct: 80  GDEL---NKIGEEIKDYLDILSSRLRIMQIVKDELGAVRDEFGTPRRTEIAEGGPDMDDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797770|gb|ABO27404.1| DNA gyrase subunit A [Sinorhizobium saheli]
          Length = 176

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +++DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKDELGAIRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +   G   +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMQIVKDELGAIRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797804|gb|ABO27421.1| DNA gyrase subunit A [Mesorhizobium loti]
          Length = 176

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W + D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRL RLT LGRD+I +ELN++G EI + LDILSSR+R+  I+K EL +V+DE  TP
Sbjct: 62  AILELRLQRLTALGRDEIADELNTIGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT + +G  DMEDED I REDMVVTVSH GY+KRVPLS+YRAQRRGGKGRSG+ 
Sbjct: 122 RRTELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKGRSGMS 176



 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 733 DQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           D++   +  +     DY + +     +    +       +       + +    ++   +
Sbjct: 77  DEIADELNTIGAEIVDYLDILSSRARVQQIVKDELAAVRDEFGTPRRTELTDGGADMEDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIQREDMVVTVSHSGYIKRVPLSLYRAQRRGGKG 171


>gi|7682339|gb|AAF67225.1|AF144774_1 topoisomerase IV subunit A [Streptococcus mitis]
          Length = 61

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/60 (60%), Positives = 46/60 (76%)

Query: 85  YHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           +HPHG+ +IYDA+ RM+QDW  R +L+E  GN GS+DGDPPAA RYTE RL + A +LL 
Sbjct: 2   FHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQ 61


>gi|120969678|gb|ABM45913.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score =  122 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           KYHPHG+ A+Y+ + RMAQD+++R +L++GQGNFGS+DG   AA RYTE R+ K
Sbjct: 1   KYHPHGDTAVYNTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAK 54


>gi|89515115|gb|ABD75387.1| DNA gyrase subunit A [Sinorhizobium arboris LMG 14919]
 gi|126797744|gb|ABO27391.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVEALIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMKIVKDELTAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMKIVKDELTAVRDEFGTPRRTEIAEGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|118175423|gb|ABK76268.1| DNA gyrase subunit A [Neisseria meningitidis]
          Length = 54

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/54 (66%), Positives = 45/54 (83%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQK 137
           KYHPHG+ A+YD + RMAQD+S+R +LI+GQGNFGSVDG   AA RYTE R++K
Sbjct: 1   KYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEK 54


>gi|89515121|gb|ABD75390.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|89515123|gb|ABD75391.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797756|gb|ABO27397.1| DNA gyrase subunit A [Sinorhizobium meliloti]
 gi|126797758|gb|ABO27398.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
 gi|126797760|gb|ABO27399.1| DNA gyrase subunit A [Sinorhizobium kummerowiae]
          Length = 176

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 137/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL +V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +     DY + +     +    +       +       + +     +   +
Sbjct: 80  GDEL---NKIGEEIKDYLDILSSRLRIMQIVKNELTAVRDEFGTPRRTEIAEGGPDMDDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 137 DLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|260204186|ref|ZP_05771677.1| DNA gyrase subunit A [Mycobacterium tuberculosis K85]
          Length = 257

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
           + + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL 
Sbjct: 2   LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELA 61

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            + D     RRTRI+    D+ DED I RED+VVT++  GY KR    +YR+Q+RGGKG 
Sbjct: 62  EIVDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGV 121

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG+ + N+L+   
Sbjct: 122 QGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP 181

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            ERI  ++         +  Y+          + +       +    I 
Sbjct: 182 EERIAQVIQIRGYT---DAPYLGAGHSQRAGEKVQADRLRLQSLRAGIV 227



 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +  +A +    AD ++ +   +      R    +  +       + +     +   ++L 
Sbjct: 29  IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLI 88

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E  ++T++E G+ KRT +  +R   R GKG++   +    +   +VA F V     +I
Sbjct: 89  AREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL----KQDDIVAHFFVCSTHDLI 144

Query: 855 L-VSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERI 897
           L  + +G + R    ++  ASR  +G  + +      +ER+  V +I
Sbjct: 145 LFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI 191


>gi|89515119|gb|ABD75389.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797752|gb|ABO27395.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797754|gb|ABO27396.1| DNA gyrase subunit A [Sinorhizobium sp. CFN_EC1002]
          Length = 176

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 110/175 (62%), Positives = 141/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DE++++IR +P+P+TAR +LM+R W A D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEIIKLIRHAPDPQTAREQLMERRWPAHDVESLIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL++++DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMSIVKDELVAIRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RR+ I+EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRSEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 32/86 (37%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     + +  +       +       S +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMSIVKDELVAIRDEFGTPRRSEIMEGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|29691138|gb|AAO91621.1| DNA gyrase A subunit [Pectobacterium wasabiae]
          Length = 183

 Score =  122 bits (306), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R      +   S +  + +  N ++   ++L  +E  +
Sbjct: 51  LLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVV 110

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G
Sbjct: 111 VTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 167

Query: 861 TLIRVPVNEIRIASR 875
            L  + V ++  ASR
Sbjct: 168 RLYWMKVYQLPEASR 182


>gi|323695908|gb|ADX99578.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
 gi|323695910|gb|ADX99579.1| DNA topoisomerase IV subunit A [Staphylococcus pseudintermedius]
          Length = 60

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 83  GKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+ HPHG+ ++YDA+ R++QDW LR +L+E  GN GS+D DPPAA RYTE +L + +  L
Sbjct: 1   GQLHPHGDRSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQL 60


>gi|157885972|emb|CAP09241.1| topoisomerase (DNA) II alpha [Danio rerio]
          Length = 810

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 156/439 (35%), Gaps = 39/439 (8%)

Query: 92  AIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLG 147
           ++   +  +AQ++  S  L L++  G FG+    G   A+ RY    L   A  L   + 
Sbjct: 2   SLMMTIVGLAQNFVGSNNLNLLQPLGQFGTRLHGGKDSASPRYIFTMLSTLARLLFPVVD 61

Query: 148 KDTVDFRPNYDGSFQ-EPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAV 205
            + + +  NYD + + EP   +    P VL NGG GI  G A+ IP +++ E+++    +
Sbjct: 62  DNLLKY--NYDDNLRVEPEWYMPI-IPLVLANGGEGIGTGWASRIPNYDVREIINNIHRM 118

Query: 206 IDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQ 265
           ++  +            P  P+     G           +   V  G    E    D   
Sbjct: 119 LNGEE----------PLPMLPSYKGFKGTID-----ELAKNQYVNNG----EVAIIDSTT 159

Query: 266 IVVTEIPYQVNKAAMLEKIAELVREKRIV---DIADLRDESDRQGYRVVIELKRGASADV 322
           I +TE+P +       E + E++          I D ++       R V+++      + 
Sbjct: 160 IEITELPVKTWTQTYKENVLEVMLNGTEKVPALITDYKEYHTDTTVRFVVKMTEERLREA 219

Query: 323 ILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNK 379
               L++   LQ+L + N + L  +     +  ++  ILK F   R +  V R  +L+  
Sbjct: 220 EAAGLHKVFKLQNLLTCNSMVLFDHVGSLKKYESVQDILKEFFELRMKYYVLRKDWLVGM 279

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA---SDIKDLIDLIDD 436
               +  L   A  +    +   +I   P  E  R        +    +         ++
Sbjct: 280 LGAESAKLSNQARFILEKIQGTLVIENKPKKELIRMLQQMGYDSDPVKAWKDAQEKEEEE 339

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
            +           S      +L + +  LT   +D++  + ++   E+      + + + 
Sbjct: 340 DAEDDDEKEKEDTSGPDYNYLLSMPMWYLTKEKKDELCKQRDAKMTELNTLK--MKAPAD 397

Query: 497 LLGIIKQELLSVKDELDTP 515
           L            + ++  
Sbjct: 398 LWKEDLAAFTEELERVEQK 416


>gi|325972892|ref|YP_004249956.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
 gi|323651494|gb|ADX97576.1| DNA gyrase C-terminal domain protein [Mycoplasma suis str.
           Illinois]
          Length = 335

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 146/371 (39%), Gaps = 72/371 (19%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +  S   ++  +P + +    +  KG +    +  +D + D+  +S++  +L  ++ G +
Sbjct: 9   LAFSRRNFIVSLPYAEFNLGEKIEKGINLSGLISTDDMIRDVIALSSNDDLLIITNKGKI 68

Query: 599 YKEKVWRLPIGSPQARG-------KALINILSLN----QGERITTIMPFPEDESSWNNLY 647
           Y+ +  +L     +          + +  +L L+    + +     +   E     ++ +
Sbjct: 69  YRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINVEPSKYLDSSF 128

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +  A+K G +++ K+ +F   ++SG I M L   DE++S       ++ILLT+  G+ VR
Sbjct: 129 LFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFGRVVR 188

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F    +R   G+ ++GVRGI L                                      
Sbjct: 189 FKSIDLRDV-GKTAMGVRGIKL-------------------------------------- 209

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                      +S      E          + +  ++  G GK      FR+++R   G+
Sbjct: 210 ----------VNSKGEKEGELISASSNADGKEVFVLTNLGKGKWVHIDHFRMTSRGVAGV 259

Query: 828 RATDVSKINEIGALVAVFPVNDN---DQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIF 883
            +         G  +  F +N N   ++I ++++ G + R+PVN +     RAT GV I 
Sbjct: 260 LSQK-----GYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGVSIM 314

Query: 884 STAK--DERVV 892
                 +E++V
Sbjct: 315 KLNHSRNEKIV 325


>gi|325989385|ref|YP_004249084.1| similar to DNA gyrase subunit alpha (probable fragment) [Mycoplasma
           suis KI3806]
 gi|323574470|emb|CBZ40120.1| similar to DNA gyrase, A subunit (probable fragment) [Mycoplasma
           suis]
          Length = 335

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 146/371 (39%), Gaps = 72/371 (19%)

Query: 540 VTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV-MRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           +  S   ++  +P + +    +  KG +    +  +D + D+  +S++  +L  ++ G +
Sbjct: 9   LAFSRRNFIVSLPYAEFNLGEKIEKGINLSGLISTDDMIRDVIALSSNDDLLIITNKGKI 68

Query: 599 YKEKVWRLPIGSPQARG-------KALINILSLN----QGERITTIMPFPEDESSWNNLY 647
           Y+ +  +L     +          + +  +L L+    + +     +   E     ++ +
Sbjct: 69  YRTQANQLLRVKKELSSENKLLQLQHVRELLDLDSSTFRDDEQIIKIINVEPSKYLDSSF 128

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +  A+K G +++ K+ +F   ++SG I M L   DE++S       ++ILLT+  G+ VR
Sbjct: 129 LFLASKDGMIKKIKMMNFQNASKSGGIVMGLQGEDEVVSALIVRDADEILLTSSFGRVVR 188

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           F    +R   G+ ++GVRGI L                                      
Sbjct: 189 FKSIDLRDV-GKTAMGVRGIKL-------------------------------------- 209

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGI 827
                      +S      E          + +  ++  G GK      FR+++R   G+
Sbjct: 210 ----------VNSKGEKEGELISASSNADGKEVFVLTNLGKGKWVYIDHFRMTSRGVAGV 259

Query: 828 RATDVSKINEIGALVAVFPVNDN---DQIILVSDKGTLIRVPVNEIRIA-SRATKGVVIF 883
            +         G  +  F +N N   ++I ++++ G + R+PVN +     RAT GV I 
Sbjct: 260 LSQK-----GYGDEIFSFTININNPLEEIFMLTNLGKVSRIPVNAVSQRKGRATSGVSIM 314

Query: 884 STAK--DERVV 892
                 +E++V
Sbjct: 315 KLNHSRNEKIV 325


>gi|89515117|gb|ABD75388.1| DNA gyrase subunit A [Sinorhizobium kostiense]
          Length = 176

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 108/175 (61%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P++AR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRHAPDPQSAREQLMERRWPARDVDALIRLIDDPRHRINEDDTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EI++ L+ILSSR R++ I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I +G  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIADGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY E +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIRDYLEILSSRLRIMQIVKDELVAVRDEFGTPRRTEIADGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797746|gb|ABO27392.1| DNA gyrase subunit A [Sinorhizobium arboris]
          Length = 176

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 112/175 (64%), Positives = 138/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL++V+DE  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMKIVKDELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMKIVKDELIAVRDEFGTPRRTEIAEGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|289573609|ref|ZP_06453836.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
 gi|289538040|gb|EFD42618.1| LOW QUALITY PROTEIN: DNA gyrase subunit A [Mycobacterium
           tuberculosis K85]
          Length = 252

 Score =  121 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
           + + E+Q +AIL+++L RL  L R  I ++L  +  EI +  DIL+   R  GI++ EL 
Sbjct: 2   LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELA 61

Query: 507 SVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGR 566
            + D     RRTRI+    D+ DED I RED+VVT++  GY KR    +YR+Q+RGGKG 
Sbjct: 62  EIVDRHGDDRRTRIIAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGV 121

Query: 567 SGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQ 626
            G  ++ +D V   F+ STH  +LFF++ G VY+ K + LP  S  ARG+ + N+L+   
Sbjct: 122 QGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQP 181

Query: 627 GERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA 675
            ERI  ++         +  Y+          + +       +    I 
Sbjct: 182 EERIAQVIQIRGYT---DAPYLGAGHSQRAGEKVQADRLRLQSLRAGIV 227



 Score = 89.1 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 72/167 (43%), Gaps = 8/167 (4%)

Query: 735 VISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
           +  +A +    AD ++ +   +      R    +  +       + +     +   ++L 
Sbjct: 29  IDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLI 88

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +E  ++T++E G+ KRT +  +R   R GKG++   +    +   +VA F V     +I
Sbjct: 89  AREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGL----KQDDIVAHFFVCSTHDLI 144

Query: 855 L-VSDKGTLIRVPVNEIRIASRATKGVVIFST---AKDERVVSVERI 897
           L  + +G + R    ++  ASR  +G  + +      +ER+  V +I
Sbjct: 145 LFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI 191


>gi|29691134|gb|AAO91619.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 183

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 3/135 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R      +   S +  + +  N ++   ++L  +E  +
Sbjct: 51  LLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDVV 110

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G
Sbjct: 111 VTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 167

Query: 861 TLIRVPVNEIRIASR 875
            L  + V ++  ASR
Sbjct: 168 RLYWMKVYQLPEASR 182


>gi|29691136|gb|AAO91620.1| DNA gyrase A subunit [Pectobacterium atrosepticum]
          Length = 183

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 77/169 (45%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL++  RL+ +I+
Sbjct: 14  RDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNNPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R      +   S +  + +  N S+   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 73  REELEAIKTQYSDERRTEITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRR 132

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            G+G  A  + + + I  L      N +D I+  S +G L  + V ++  ASR
Sbjct: 133 GGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEASR 182


>gi|129560499|dbj|BAF48800.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score =  121 bits (304), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 44/62 (70%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R  
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYP 60

Query: 110 LI 111
            I
Sbjct: 61  SI 62


>gi|89515125|gb|ABD75392.1| DNA gyrase subunit A [Sinorhizobium medicae]
 gi|126797762|gb|ABO27400.1| DNA gyrase subunit A [Sinorhizobium medicae]
          Length = 176

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 113/175 (64%), Positives = 137/175 (78%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDGLIRLIDDPRHRINDDATYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL SV+DE  TP
Sbjct: 62  AILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I EG  DM+DED I +EDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIAEGGPDMDDEDLIAQEDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       + +     +   ++L  +E  +
Sbjct: 86  IGDEIKDYLDILSSRLRIMQIVKDELTSVRDEFGTPRRTEIAEGGPDMDDEDLIAQEDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|297790981|ref|XP_002863375.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297309210|gb|EFH39634.1| hypothetical protein ARALYDRAFT_916718 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 286

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 29/226 (12%)

Query: 6   ISSDEEEEKGITSVSITDEMQNSY-LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
           +  D   ++ IT +S  D +  ++ L Y     L R IP + DGLK   R+ILF + +  
Sbjct: 1   MQPDTHLDRSITRISYHDFI--NFELIYFFQANLERCIPSVADGLKLSSRKILFTLFKCN 58

Query: 65  VEWNKKYVKCA--RISGEVMG--KYHPHGNAAIYDALARMAQDWS---LRLLLIEGQGNF 117
                   K    +++ +V     YH H   ++   + RMAQD+      + L++  G F
Sbjct: 59  -------KKVTVEQLASDVSKTCSYH-HSQQSLAKTIVRMAQDYVGSPNNVNLLDPDGQF 110

Query: 118 GSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV-VLCARY 171
           GS    G   +  +Y    L   A  L  +      D    Y   DG   EP+  +    
Sbjct: 111 GSRISGGKDASNPKYIFTELSVMARVLFPNDD----DVHLQYLKEDGKTIEPLCYMPV-I 165

Query: 172 PNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALM 217
           P VLVNG  G+  G +T IP ++  E+ +    ++    +      
Sbjct: 166 PTVLVNGARGVGSGWSTFIPKYDPREIAENIRRLLKGEVMIAMDPW 211


>gi|32453406|gb|AAP58315.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 60

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 87  PHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDL 146
           PHG+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  LL D+
Sbjct: 1   PHGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDI 60


>gi|284097497|ref|ZP_06385584.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
 gi|283830993|gb|EFC35016.1| DNA gyrase, subunit A [Candidatus Poribacteria sp. WGA-A3]
          Length = 154

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 90/154 (58%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 241 YATGRGSIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
             TGRG + +R  +H+E     DR  I+VTEIPYQVNKA +LEKIAELV+EKR+  I+D+
Sbjct: 1   MNTGRGLLTVRAKTHVETDEKRDRASIIVTEIPYQVNKAKVLEKIAELVQEKRLEGISDI 60

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
           RDESDR G RVVIELK+G    VILNQLY++T LQ+ F V M+AL   +PE  TL  IL 
Sbjct: 61  RDESDRDGIRVVIELKKGELPPVILNQLYKHTQLQNTFGVIMLALVHNRPEILTLKQILV 120

Query: 360 AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           AF+  R EVV+RRT Y L KA +RAH++ GL IA
Sbjct: 121 AFLEHRREVVIRRTAYELRKAEERAHIVEGLNIA 154


>gi|29691132|gb|AAO91618.1| DNA gyrase A subunit [Pectobacterium betavasculorum]
          Length = 183

 Score =  121 bits (303), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 111/169 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E   L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 64.4 bits (155), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 3/135 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R      +   S    + +  N ++   ++L  +E  +
Sbjct: 51  LLAEIAELLYILNSPERLMEVIREELEAIKTQYSDGRRTEITANTADINIEDLINQEDVV 110

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G
Sbjct: 111 VTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 167

Query: 861 TLIRVPVNEIRIASR 875
            L  + V ++  ASR
Sbjct: 168 RLYWMKVYQLPEASR 182


>gi|126797800|gb|ABO27419.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 143/175 (81%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIRVIRGAPDPQSAREELMTRRWPAADVESLIQLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I  ELN +G+EIK+ LDILSSR R+  I+K+EL++V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIDEELNQIGVEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + +    +  +     DY + +     +    +       +       + +     E 
Sbjct: 74  LGRDEIDEELNQIGVEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEM 133

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
             ++L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 134 DDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|268574422|ref|XP_002642188.1| Hypothetical protein CBG18156 [Caenorhabditis briggsae]
          Length = 1206

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 103/573 (17%), Positives = 198/573 (34%), Gaps = 107/573 (18%)

Query: 1    MTEHIISSDEEEE--KGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILF 58
            M      SDE +   +G   VS T++++ + L Y        +IP L DGLKP  R+IL+
Sbjct: 668  MAFDREKSDERKRWIRGSDEVSTTEDVEKTELNY------EESIPSLIDGLKPSQRKILW 721

Query: 59   GMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQ 114
             +++M        +K ++++G V  +  YH HG  ++   + RM Q +  +  + L++  
Sbjct: 722  TLLKMDETTE---MKVSQLAGAVAHRQSYH-HGEESLVRTIVRMGQTFCGASNMPLLQPI 777

Query: 115  GNFGSV--DGDPPAAERYTECRLQKAAHFLLDDL-GKDTVDF----RPNY---------- 157
            G FG+    G+  A+ RY    L             K  + F    +  Y          
Sbjct: 778  GQFGTRHEGGNDAASARYIFTSLAYVDIQKTKQFREKRQMPFDSASQKTYMSPESSTSQG 837

Query: 158  -------------------------DGSFQEPVV----------LCARYPNVLVNGGGGI 182
                                     D    E  V          LC   P +LVNG  GI
Sbjct: 838  GVMTFPGWCYDIMTRPTTRLLFPIADDDLLEKKVEEGITVEPNTLCPIIPLILVNGTEGI 897

Query: 183  AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
              G +T +   N  +V+D     +    IDL +L+     P +      +         +
Sbjct: 898  GTGWSTKVANRNPVDVID-----MIRRKIDLSSLVVNEIPPFYEDYKGKIEIVTPTKFIS 952

Query: 243  TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDE 302
            TG+  I        E+ +     + ++E+P  V  +   EK++ ++ +  I + ++   E
Sbjct: 953  TGKIKIS-----RPERKNASTFSVEISELPIGVWTSKYKEKLSNILEKLPITEFSERHTE 1007

Query: 303  SDRQGYRVVIELKRGASA-DVILNQLYRYTSLQSLFSVNMVALNGYKPERF--TLIGILK 359
              +  +R++ + K+ A       + L  Y  L++  + N V  +     +    +  I  
Sbjct: 1008 -KQVNFRLIFDRKKAARFLQKSNSDLLNYFKLRTSITENRVLFDRNGQLKEFGNVSEIAN 1066

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHV-LVGLAIAVANLDEVVRIIRFSPNPETARRELM 418
             F   R+++  +R +    +   +       +       +    +            + M
Sbjct: 1067 EFFEIRKDLYQKRLEIQKRECEAKLKYVNNQMNFIELVTNGTFEL------------KSM 1114

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD-----DI 473
             R      ++++   +D                     +LE+ L+RLT    +       
Sbjct: 1115 DRESLELKLEEIGFEVDSMKTENSKKSNYG-------YLLEMPLSRLTLDEMNRLKERKS 1167

Query: 474  RNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
            R  L     E  +      S    L    ++  
Sbjct: 1168 RRNLELKAAESADWKSTWHSELDKLEESIKKTR 1200


>gi|29691140|gb|AAO91622.1| DNA gyrase A subunit [Pectobacterium carotovorum subsp. odoriferum]
          Length = 183

 Score =  121 bits (302), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/169 (46%), Positives = 112/169 (66%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTG+  + + +E  +L  EI E L IL+S  RL+ +I+
Sbjct: 14  RDGHYYLTEPQAQAILDLRLQKLTGMEHEKLLDEYKALLAEIAELLYILNSPERLMEVIR 73

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 74  EELEAIKTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 133

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  S 
Sbjct: 134 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASR 182



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 3/136 (2%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +L   A+    +   + +    R      +   S +  + +  N ++   ++L  +E  
Sbjct: 50  ALLAEIAELLYILNSPERLMEVIREELEAIKTQYSDERRTEITANTADINIEDLINQEDV 109

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +
Sbjct: 110 VVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSR 166

Query: 860 GTLIRVPVNEIRIASR 875
           G L  + V ++  ASR
Sbjct: 167 GRLYWMKVYQLPEASR 182


>gi|122939097|gb|ABM69130.1| DNA gyrase subunit A [Ensifer adhaerens]
 gi|126797772|gb|ABO27405.1| DNA gyrase subunit A [Ensifer adhaerens]
          Length = 176

 Score =  121 bits (302), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 135/175 (77%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+++IR +P+P+TAR +LM+R W A D+  LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDSLIRLIDDPRHRINEDNTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AIL+LRL RLT LGRD+I +ELN +G EIK+ LDILSSR R++ I+K EL ++  E  TP
Sbjct: 62  AILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSSRLRIMTIVKDELTAISQEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RR+ I EG  DM+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRSEIAEGGPDMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMA 176



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       S +     +   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRLRIMTIVKDELTAISQEFGTPRRSEIAEGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797798|gb|ABO27418.1| DNA gyrase subunit A [Rhizobium tropici]
          Length = 176

 Score =  120 bits (301), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 143/175 (81%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVIRVIRHAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K+EL++V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 47.9 bits (112), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       + +     E   ++L  +E  +
Sbjct: 86  IGAEIKDYLDILSSRVRIQTIVKEELIAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|126797794|gb|ABO27416.1| DNA gyrase subunit A [Rhizobium huautlense]
          Length = 176

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 111/175 (63%), Positives = 134/175 (76%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DE++ +IR +P+P+TAR +LM R W A D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEIILLIRRAPDPQTAREQLMTRRWPAQDVEALIRLIDDPRHRINDDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EI + LDILSSR R+  I+K E+  V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGAEISDYLDILSSRLRIQQIVKDEMAEVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT I+EG  DM+DED I REDMVVTVSHLGY+KRV L  YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIMEGGPDMDDEDLIAREDMVVTVSHLGYIKRVALGTYRAQRRGGKGRSGMA 176



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 34/86 (39%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +    +DY + +     +    +    +  +       + +     +   ++L  +E  +
Sbjct: 86  IGAEISDYLDILSSRLRIQQIVKDEMAEVRDEFGTPRRTEIMEGGPDMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR +   +R   R GKG
Sbjct: 146 VTVSHLGYIKRVALGTYRAQRRGGKG 171


>gi|183987574|gb|ACC65777.1| topoisomerase II [Pleurotus tuber-regium]
          Length = 692

 Score =  119 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 22/185 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  +D +    + +++   + R+IP + DGLKP  R++++G  +  +   KK +
Sbjct: 519 DHNMDEIPFSDFINKELILFSMADNI-RSIPSVADGLKPGQRKVVWGCFKRKL---KKEI 574

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPA 126
           K A++ G +     YH HG A++   +  +AQ++  S  + L++  G +G+ D  G   A
Sbjct: 575 KVAQLVGYISEHAAYH-HGEASLAATIINLAQNYVGSNNINLLKPNGQYGTRDQGGKDHA 633

Query: 127 AERYTECRLQKAAHFLL----DDLGKDTVDFRPNYDGSFQEPV-VLCARYPNVLVNGGGG 181
           + RY    +      +     D L K   D     D    EP   +    P VLVNG  G
Sbjct: 634 SPRYIYTEVMPLTRMICHPAGDPLLKRQTD-----DNLLVEPEWYMPV-VPLVLVNGAEG 687

Query: 182 IAVGM 186
           I  G 
Sbjct: 688 IGTGW 692


>gi|126797802|gb|ABO27420.1| DNA gyrase subunit A [Agrobacterium rhizogenes]
          Length = 176

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 142/175 (81%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+ +IR +P+P++AR ELM R WNA+D++ LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEVILVIRQAPDPQSAREELMTRRWNAADVESLIRLIDDPRHRINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I  ELN +G EIK+ LDILSSR+R+  I+K+EL +V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIDEELNQIGAEIKDYLDILSSRARIQTIVKEELSAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 49.0 bits (115), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 35/98 (35%)

Query: 729 LAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEE 788
           L + +    +  +     DY + +     +    +       +       + +     E 
Sbjct: 74  LGRDEIDEELNQIGAEIKDYLDILSSRARIQTIVKEELSAVRDEFGTPRRTEIVDGGLEM 133

Query: 789 RCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
             ++L  +E  ++TVS  G+ KR     +R   R GKG
Sbjct: 134 DDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|29691128|gb|AAO91616.1| DNA gyrase A subunit [Erwinia pyrifoliae]
          Length = 183

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 78/175 (44%), Positives = 111/175 (63%)

Query: 437 SSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSR 496
            +     DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  R
Sbjct: 8   EASYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQIAELLRILGSSER 67

Query: 497 LLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVY 556
           L+ +I++EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y
Sbjct: 68  LMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDY 127

Query: 557 RAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
            AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  + 
Sbjct: 128 EAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEANR 182



 Score = 65.2 bits (157), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 763 RLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNR 822
           R       +    K  + +  N ++   ++L  +E  ++T+S +G+ K     D+    R
Sbjct: 73  REELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRR 132

Query: 823 SGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASR 875
            GKG  A  + + + I  L      N +D I+  S +G L  + V ++  A+R
Sbjct: 133 GGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWMKVYQLPEANR 182


>gi|2598665|dbj|BAA23308.1| CfparC [Citrobacter freundii]
 gi|2780357|dbj|BAA24279.1| parC [Enterobacter cloacae]
          Length = 49

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/47 (55%), Positives = 36/47 (76%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFG 118
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQGN+G
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG 47


>gi|122939091|gb|ABM69127.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae USDA 2370]
 gi|126797790|gb|ABO27414.1| DNA gyrase subunit A [Rhizobium indigoferae]
          Length = 176

 Score =  119 bits (299), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 141/175 (80%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A+D++ LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIRVIRQAPDPQSAREELMTRRWPAADVESLIRLIDDPRHRINDDLTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K ELL+V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       + +     E   ++L  +E  +
Sbjct: 86  IGEEIKDYLDILSSRVRIQTIVKDELLAVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|10281012|dbj|BAB13747.1| type II DNA topoisomerase [Kluyveromyces marxianus]
          Length = 777

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +T + I+D +    + +++   + R+IP + DGLKP  R++++   +  +   K  +
Sbjct: 624 DPKLTEIPISDFINKELILFSLADNI-RSIPSVLDGLKPGQRKVIYACFKRNL---KSEI 679

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K A++ G V     YH HG  ++Y  +  +AQD+  S  + L++  G FG+    G   A
Sbjct: 680 KVAQLGGYVSEHTGYH-HGEPSLYQTIVGLAQDFVGSNNIYLLKPNGAFGTRATGGKDSA 738

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           A RY    L K    + + L    + +  + D    EP 
Sbjct: 739 APRYIFTELNKITRKIFNSLDDPLLTYIQD-DEQTVEPE 776


>gi|129560501|dbj|BAF48801.1| DNA gyrase subunit A [Campylobacter jejuni]
 gi|129560503|dbj|BAF48802.1| DNA gyrase subunit A [Campylobacter jejuni]
          Length = 62

 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 44/62 (70%)

Query: 50  KPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLL 109
           KPVHRRIL+ M     +    +VK ARI G V+G+YHPHG+ A+YDAL RMAQD+S+R  
Sbjct: 1   KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYP 60

Query: 110 LI 111
            I
Sbjct: 61  SI 62


>gi|10281020|dbj|BAB13751.1| type II DNA topoisomerase [Candida dubliniensis]
          Length = 782

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 12/159 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  IT + I+D +    + ++++  + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 629 DPEITEIPISDFINKELILFSMSDNV-RSIPSVLDGFKPGQRKVLYGCFKKKLRSE---I 684

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 685 KVAQLAGYVSENTGYH-HGEQSLVPTIIGLAQNFIGSNNINVLKPNGSFGSRAAGGKDFS 743

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           A RY    L +    + + L      +  + D    EP 
Sbjct: 744 AARYIFTELSEITRKIFNPLDDPLYTYVQD-DEQTVEPE 781


>gi|213023343|ref|ZP_03337790.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 169

 Score =  118 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 308 YRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREE 367
            R+VIE+KR A  +V+LN LY  T LQ  F +NMVAL+  +P+   L  I+ AFV  R E
Sbjct: 1   MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRRE 60

Query: 368 VVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           VV RRT + L KARDRAH+L  LAIA+AN+D ++ +IR +P P  A+  L+ R W+  ++
Sbjct: 61  VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNV 120

Query: 428 KDLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTG 467
             +++   D +             DG  YL+E Q +AIL+LRL +LTG
Sbjct: 121 AAMLERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTG 168


>gi|270676214|ref|ZP_06222680.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
 gi|270316446|gb|EFA28324.1| Topoisomerase IV subunit A [Haemophilus influenzae HK1212]
          Length = 76

 Score =  118 bits (296), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 46/74 (62%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
              +GI  + +    + +YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3  NINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATA 62

Query: 70 KYVKCARISGEVMG 83
          KY K AR  G+V+G
Sbjct: 63 KYKKSARTVGDVLG 76


>gi|38569887|gb|AAR24461.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R GKGI+  +++  N  G L  +  VND++ I++++D G +IR  V +I    R+
Sbjct: 1   YPTKGRGGKGIKTANITAKN--GPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRS 58

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIV 903
             GV +    ++ ++V+   ++   I 
Sbjct: 59  AMGVKVMRLDENAKIVTFALVKSEVIE 85



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             + DI++ T  G  +R  ++ I    GR+++GV+ + L +  ++++ A+V   
Sbjct: 30  NDDEDIMIITDTGVIIRTSVADI-SQTGRSAMGVKVMRLDENAKIVTFALVKSE 82



 Score = 37.5 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +++               ++ I+ +++ G   RTS  D   + RS  G++   + +    
Sbjct: 14  ANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDE---N 70

Query: 839 GALVAVFPVNDN 850
             +V    V   
Sbjct: 71  AKIVTFALVKSE 82


>gi|126797792|gb|ABO27415.1| DNA gyrase subunit A [Rhizobium gallicum]
          Length = 176

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 116/175 (66%), Positives = 139/175 (79%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DEV+R+IR +P+P++AR ELM R W A D++ LI LIDD  + I  D T  LSE Q R
Sbjct: 2   NIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINEDMTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EIK+ LDILSSR R+  I+K EL SV+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGDEIKDYLDILSSRVRIQTIVKDELTSVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RRT IV+G L+M+DED I REDMVVTVSHLGY+KRVPL+ YRAQRRGGKGRSG+ 
Sbjct: 122 RRTEIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGGKGRSGMT 176



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 31/86 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     DY + +     +    +       +       + +     E   ++L  +E  +
Sbjct: 86  IGDEIKDYLDILSSRVRIQTIVKDELTSVRDEFGTPRRTEIVDGGLEMDDEDLIAREDMV 145

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           +TVS  G+ KR     +R   R GKG
Sbjct: 146 VTVSHLGYIKRVPLTTYRAQRRGGKG 171


>gi|23345305|gb|AAN28728.1| DNA gyrase A [Streptococcus mutans]
          Length = 95

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)

Query: 817 FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRA 876
           +    R GKGI+  +++  N  G L  +  VND++ I++++D G +IR  V +I    R+
Sbjct: 1   YPTKGRGGKGIKTANITAKN--GPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRS 58

Query: 877 TKGVVIFSTAKDERVVSVERIRESEIV 903
             GV +    ++ ++V+   ++   I 
Sbjct: 59  AMGVKVMRLDENAKIVTFALVKSEVIE 85



 Score = 49.0 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHA 744
             + DI++ T  G  +R  ++ I    GR+++GV+ + L +  ++++ A+V   
Sbjct: 30  NDDEDIMIITDTGVIIRTSVADI-SQTGRSAMGVKVMRLDENAKIVTFALVKSE 82



 Score = 37.5 bits (85), Expect = 9.8,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
           +++               ++ I+ +++ G   RTS  D   + RS  G++   + +    
Sbjct: 14  ANITAKNGPLAGLVTVNDDEDIMIITDTGVIIRTSVADISQTGRSAMGVKVMRLDE---N 70

Query: 839 GALVAVFPVNDN 850
             +V    V   
Sbjct: 71  AKIVTFALVKSE 82


>gi|126797796|gb|ABO27417.1| DNA gyrase subunit A [Rhizobium galegae]
          Length = 176

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 109/175 (62%), Positives = 135/175 (77%)

Query: 396 NLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR 455
           N+DE++ +IR +P+P+TAR +LM R W A D+  LI LIDD  + I  DGT  LSE Q R
Sbjct: 2   NIDEIILLIRRAPDPQTAREQLMTRRWPAQDVDALIRLIDDPRHKINEDGTYNLSEEQAR 61

Query: 456 AILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           AILELRLARLT LGRD+I +ELN +G EI + LDILSSR R+  I+K EL +V+DE  TP
Sbjct: 62  AILELRLARLTALGRDEIGDELNKIGAEISDYLDILSSRLRIQTIVKDELAAVRDEFGTP 121

Query: 516 RRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           RR++I++  L+M+DED I REDMVVTVSHLGY+KRV L  YRAQRRGGKGRSG+ 
Sbjct: 122 RRSQILDAGLEMDDEDLIAREDMVVTVSHLGYIKRVTLGTYRAQRRGGKGRSGMA 176



 Score = 45.6 bits (106), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 732 GDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQ 791
           GD++     +    +DY + +     +    +       +       S +     E   +
Sbjct: 80  GDEL---NKIGAEISDYLDILSSRLRIQTIVKDELAAVRDEFGTPRRSQILDAGLEMDDE 136

Query: 792 ELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +L  +E  ++TVS  G+ KR +   +R   R GKG
Sbjct: 137 DLIAREDMVVTVSHLGYIKRVTLGTYRAQRRGGKG 171


>gi|33322875|gb|AAQ07174.1|AF496482_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 138

 Score =  118 bits (295), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/138 (50%), Positives = 102/138 (73%)

Query: 207 DNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQI 266
            NPD+    LM+ I GPDFPTG +++GR G+ +AY +G+G+IV+R  + IE     RE+I
Sbjct: 1   KNPDVTTKELMKAIPGPDFPTGGILMGRGGVLHAYESGKGNIVVRAKTEIETEKSGRERI 60

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           +V+EIPY VNKA +++KIAEL R+K I  I  +RDESD+ G R+ I+++R ASA V+LN 
Sbjct: 61  IVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDESDQSGMRITIDVRRDASASVVLNN 120

Query: 327 LYRYTSLQSLFSVNMVAL 344
           L++ T +QS F++NMVA+
Sbjct: 121 LFKETQMQSNFAMNMVAI 138


>gi|70939063|ref|XP_740124.1| DNA GyrAse a-subunit [Plasmodium chabaudi chabaudi]
 gi|56517618|emb|CAH87702.1| DNA GyrAse a-subunit, putative [Plasmodium chabaudi chabaudi]
          Length = 516

 Score =  117 bits (294), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 73/359 (20%), Positives = 156/359 (43%), Gaps = 56/359 (15%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTG-IKNAYATGRG 246
           TNIP+HNL +V++  ++ + N  I  D L  II+GPDF TG +I+ +   ++N Y TG+G
Sbjct: 3   TNIPSHNLVDVINASISFLLNDKITNDELFNIIKGPDFSTGGIIITKKDTLRNIYNTGKG 62

Query: 247 SIVIRGVSHIEKTSGD----------------------REQIVVTEIPYQVNKAAMLEKI 284
           SI+IR     E    +                       +++++  +P  V    ++E I
Sbjct: 63  SIIIRSNVFYEYVHNNKTYTHHINELGNLENLESDNKSCKKLIIKNLPPNVKPNELIENI 122

Query: 285 AELVREKRIVD---IADLRDESDRQGYRVVIELKRGASADVILN---QLYRYTSLQSLFS 338
             ++ EK+      ++ +RDES++   R+V+EL++ +  + I N    L++YT ++  + 
Sbjct: 123 VTVLNEKKNEHDNILSKIRDESEKNEMRIVLELRKHSQIEQIHNFVSFLFKYTPMEINYH 182

Query: 339 VNMVALNG-YKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
            N V +       +F+L   L+ +   R + + +  +   N  +   +++         +
Sbjct: 183 CNFVCIGYENSYTQFSLKSFLQLWCENRIKFIKKNYQIKNNNLQKDLNIIDLYLTIQKKI 242

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
            +++  I  + N E  +                                  L++ Q + I
Sbjct: 243 LDIISFIHKNQNIEQIQN--------------------------YLKSNFKLNDDQIKYI 276

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPR 516
           L +++ +L  +   D   +  ++  +I+    I+ +   +  II  EL+ +K++    +
Sbjct: 277 LSMKIQKLVNIKNIDFDIQKKNIIKKIQSNQYIIDNVQEIKQIIIDELIQIKNKYSLKK 335


>gi|289672552|ref|ZP_06493442.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 403

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 52/389 (13%)

Query: 353 TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPET 412
            L  +L  ++ FR   V RR ++ L+K   R H+L GL  A  NLDEV+ IIR + +P  
Sbjct: 1   NLKTLLGEWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHP-- 58

Query: 413 ARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDD 472
            + EL+ R                            LSE+Q   IL+ RL +L  L    
Sbjct: 59  -KAELIAR--------------------------FDLSEIQADYILDTRLRQLARLEEMK 91

Query: 473 IRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM--EDE 530
           +R+E ++L  E  +   +L S S+L  +++ EL++  +     RR+ IV         + 
Sbjct: 92  LRSEQDALRKEQAKLQALLGSESKLRKLVRAELIADAETYGDDRRSPIVARAEAKALSEN 151

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           + +  E + V +S  G+V        R  +      +G+  +  D      I  ++   +
Sbjct: 152 ELMPTEPVTVVLSEKGWV--------RCAKGHDIDATGLSYKAGDGFKTSSIGRSNQFAV 203

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y      LP    + +G+ L   L    G     ++         ++   V 
Sbjct: 204 FIDSTGRSYSVAAHTLPSA--RGQGEPLTGKLQPPPGATFECVLL------PEDDALYVI 255

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVE--TCTQENDILLTTKLGQCVRF 708
           A+  G     K  D    N++GK  + L +  +++        ++N +   T  G+ + F
Sbjct: 256 ASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQNWLAAVTTEGRLLVF 315

Query: 709 PISAIRVFAGRNSVGVRGISLAKGDQVIS 737
            IS +         G + I +  G++V S
Sbjct: 316 KISDLPQLG--KGKGNKIIGI-PGERVAS 341


>gi|29691130|gb|AAO91617.1| DNA gyrase A subunit [Erwinia amylovora]
          Length = 183

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 77/168 (45%), Positives = 111/168 (66%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 15  NGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGG
Sbjct: 75  ELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGG 134

Query: 564 KGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSP 611
           KG+S   +++EDF+  L + +TH ++L FSS G +Y  KV++LP  + 
Sbjct: 135 KGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEANR 182



 Score = 65.6 bits (158), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R       +    K  + +  N ++   ++L  +E  ++T+S 
Sbjct: 56  AELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSH 115

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G L  +
Sbjct: 116 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWM 172

Query: 866 PVNEIRIASR 875
            V ++  A+R
Sbjct: 173 KVYQLPEANR 182


>gi|18202021|sp|O33149|GYRA_MYCMA RecName: Full=DNA gyrase subunit A; Contains: RecName: Full=Mma
           gyrA intein
 gi|2546990|emb|CAA05167.1| DNA gyrase subunit A [Mycobacterium malmoense]
          Length = 473

 Score =  117 bits (294), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 38/49 (77%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERY 130
           MG YHPHGNA+IY+ L RMAQ WSLR  L+ GQGNFGS   +PPAA RY
Sbjct: 1   MGNYHPHGNASIYNTLVRMAQPWSLRYPLVNGQGNFGSPGNNPPAAMRY 49


>gi|167946762|ref|ZP_02533836.1| DNA gyrase subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 163

 Score =  117 bits (293), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 85/153 (55%), Positives = 116/153 (75%), Gaps = 1/153 (0%)

Query: 250 IRGVSHIEK-TSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGY 308
           +R  + IE   S +R++I+V E+PYQVNKA +LEKIAELV+EK+I  I +LRDESD+ G 
Sbjct: 1   MRARTEIESLDSSNRQRIIVHELPYQVNKARLLEKIAELVKEKKIEGITELRDESDKDGM 60

Query: 309 RVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEV 368
           R+VIEL+RG  A+V+LN L++ T++QS+F +NMVAL   +P    L  +L+ F+  R EV
Sbjct: 61  RMVIELRRGEVAEVVLNNLFQQTAMQSVFGINMVALVDGQPRLLNLKQMLEYFIRHRREV 120

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           V RRT + L KARDRAHVL GLA+A+AN+DEV+
Sbjct: 121 VTRRTLFELRKARDRAHVLEGLAVALANIDEVI 153


>gi|10281018|dbj|BAB13750.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 18/162 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  +   K  +
Sbjct: 629 DPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKL---KSEI 684

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 685 KVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGKDFS 743

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV 165
           A RY    L +    + + L     D   NY   D    EP 
Sbjct: 744 AARYIFTELNEITRKIFNPLD----DPLYNYVQDDEQTVEPE 781


>gi|10281022|dbj|BAB13752.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + +  +  + I++ +    + ++++  + R+IP + DGLKP  R++LFG  +  +  
Sbjct: 621 PGNQLDPELNEIPISEFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLFGCFKRNL-- 677

Query: 68  NKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
            K  +K A+++  V     YH HG  ++   +  +AQ++  S  + +++  G FGS    
Sbjct: 678 -KSEIKVAQLAAYVSENTGYH-HGEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATG 735

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           G   AA RY    L      + + L      +  + D    EP
Sbjct: 736 GKDAAAARYIFTELNDITKAIFNPLDNPIYSYVQD-DEQTVEP 777


>gi|10281016|dbj|BAB13749.1| type II DNA topoisomerase [Candida tropicalis]
          Length = 782

 Score =  117 bits (292), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 18/162 (11%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  + I+D +    + ++++  + R+IP + DGLKP  R++L+G ++  +   K  +
Sbjct: 629 DPEINEIPISDFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLYGCIKKKL---KSEI 684

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K A+++G V     YH HG  ++   +  +AQ++  S  + +++  G+FGS    G   +
Sbjct: 685 KVAQLAGYVSENTGYH-HGEQSLVQTIIGLAQNFVGSNNINILKPNGSFGSRAAGGKDFS 743

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DGSFQEPV 165
           A RY    L +    + + L     D   NY   D    EP 
Sbjct: 744 AARYIFTELNEITRKIFNPLD----DPLYNYVQDDEQTVEPE 781


>gi|10281024|dbj|BAB13753.1| type II DNA topoisomerase [Candida parapsilosis]
          Length = 779

 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + +  +  + I++ +    + ++++  + R+IP + DGLKP  R++LFG  +  +  
Sbjct: 621 PGNQLDPALNEIPISEFINKELILFSMSDNI-RSIPSVLDGLKPGQRKVLFGCFKRNL-- 677

Query: 68  NKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--D 121
            K  +K A+++  V     YH HG  ++   +  +AQ++  S  + +++  G FGS    
Sbjct: 678 -KSEIKVAQLAAYVSENTGYH-HGEVSLVQTIIGLAQNFVGSNNINILKPNGAFGSRATG 735

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           G   AA RY    L      + + L      +  + D    EP
Sbjct: 736 GKDAAAARYIFTELNDITKAIFNPLDNPIYTYVQD-DEQTVEP 777


>gi|10802663|gb|AAG23554.1|AF244605_1 DNA gyrase subunit A [Carboxydothermus hydrogenoformans]
          Length = 160

 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 79/182 (43%), Positives = 107/182 (58%), Gaps = 26/182 (14%)

Query: 298 DLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGI 357
              DESDR+G R+VIELKR A+  V+LNQL+++T LQ  F + M+AL   +P    L  I
Sbjct: 3   GFTDESDRKGMRIVIELKRDANPQVVLNQLFKHTQLQDTFGIIMLALVDNQPRILNLKEI 62

Query: 358 LKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARREL 417
           L  ++  +++VV RRT+Y LNKA +RAH+L GL IA+ANLDEV++IIR S + +TAR  L
Sbjct: 63  LFYYLEHQKDVVTRRTRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGL 122

Query: 418 MQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNEL 477
           M R                            L+E Q +AIL++RL RLT L R+ I  E 
Sbjct: 123 MSR--------------------------FGLTEKQAQAILDMRLQRLTALEREKIDEEY 156

Query: 478 NS 479
             
Sbjct: 157 RE 158


>gi|10281028|dbj|BAB13755.1| type II DNA topoisomerase [Clavispora lusitaniae]
          Length = 772

 Score =  115 bits (287), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 12/163 (7%)

Query: 8   SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
              + +  I  + I D +    + +++   + R++P + DGLKP  R++++G+ +     
Sbjct: 614 PGTQLDPEIEEIPIADFINKELILFSMADNI-RSLPCVLDGLKPAQRKVIYGLQK---RA 669

Query: 68  NKKYVKCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS--VD 121
             +  K   ++G +     YH HG+ ++   +  MAQD+  +  + L+E +GNFGS  + 
Sbjct: 670 GNREGKVNDLAGYISSNTAYH-HGDQSLVMTIVSMAQDFVGANNINLLEPRGNFGSRFMG 728

Query: 122 GDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEP 164
           G   +A RY    L +    + + L      +    D S  EP
Sbjct: 729 GKDASAARYIHTCLSEITKSVYNPLDNSLYKYVQE-DESTVEP 770


>gi|313609053|gb|EFR84774.1| DNA topoisomerase 4 subunit A [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score =  114 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/257 (18%), Positives = 100/257 (38%), Gaps = 55/257 (21%)

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSG-KIAMKLDSRDEILSVETCTQE 693
                ++       +F TK+G  +++ ++++     S   +A+KL   DE+LSV      
Sbjct: 5   SVIAIQAFTEEQRFLFVTKNGMTKQSAITNYKPQRYSKSMMAIKLKGDDELLSVHLIDGT 64

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERIC 753
            DI L TK G  +R+ ++ I     R + GV+ I+L + D VI   ++            
Sbjct: 65  EDIFLATKNGYGLRYAVAEIPESGARTA-GVKAINLKQDDMVIGGVVL------------ 111

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
                                                  +  +++ IL  +++G  K+  
Sbjct: 112 ---------------------------------------MPNEQKHILLATQRGSLKQMK 132

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIA 873
           + +F   +R+ +G+      K N     + +   ++ND + + ++   ++ + V  +RI 
Sbjct: 133 ASEFEPISRAKRGLLMLRELKSNPH-RFIGITLADNNDHLFIETNTDQIVEIDVANLRIT 191

Query: 874 SRATKGVVIFS-TAKDE 889
            R + G  +   T + E
Sbjct: 192 DRYSNGSFVLDETMEGE 208



 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 4/119 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
             I      +   +EQ  L V++ G  K+++  +++   R  K + A  +        L+
Sbjct: 1   EEIRSVIAIQAFTEEQRFLFVTKNGMTKQSAITNYKPQ-RYSKSMMAIKLK---GDDELL 56

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
           +V  ++  + I L +  G  +R  V EI  +   T GV   +  +D+ V+    +  +E
Sbjct: 57  SVHLIDGTEDIFLATKNGYGLRYAVAEIPESGARTAGVKAINLKQDDMVIGGVVLMPNE 115


>gi|255030685|ref|ZP_05302636.1| DNA topoisomerase IV subunit A [Listeria monocytogenes LO28]
          Length = 278

 Score =  114 bits (285), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 33/280 (11%)

Query: 341 MVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEV 400
           MVA+N  +PE   +I +L A++  ++E++ +R++Y + KAR R H+L GL  A++ LDEV
Sbjct: 1   MVAINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV 60

Query: 401 VRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILEL 460
           +++IR S +   A+  L  +                             SE Q  AI+ L
Sbjct: 61  IKLIRGSKDKRDAKLNLQTK--------------------------YDFSEKQAEAIVSL 94

Query: 461 RLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRI 520
           +L RLT     ++++E  SL  +I     IL   + L+ ++K+EL  +K +  T RRT +
Sbjct: 95  QLYRLTNTDIHELQSEAKSLAEQISVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEV 154

Query: 521 V--EGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
                 + ++ E  +  ED++V+V+  GYVKR     Y A          + M++ D   
Sbjct: 155 QAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAASNGA-----ELAMKEADHAI 209

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
            +  +++  S+L F+S G      V  LP    +  G  +
Sbjct: 210 FIQKMNSLDSLLLFTSKGNFIYRPVHELPDIRWKNLGDHV 249



 Score = 39.8 bits (91), Expect = 2.4,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +  L     +  T+ + +   E    +   + L   E  I++V+++G+ KRTS   +  S
Sbjct: 136 KEELAEIKKKYKTARRTEVQAEIAEIKIDTEVLVANEDVIVSVTKEGYVKRTSQRSYAAS 195

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIR 871
           N +     A       E    + +  +N  D ++L + KG  I  PV+E+ 
Sbjct: 196 NGAEL---AMK-----EADHAIFIQKMNSLDSLLLFTSKGNFIYRPVHELP 238


>gi|202073603|gb|ACH96272.1| topoisomerase IV ParC subunit [Waddlia chondrophila WSU 86-1044]
 gi|202073605|gb|ACH96273.1| topoisomerase IV ParC subunit [Waddlia chondrophila]
          Length = 73

 Score =  114 bits (284), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 49/80 (61%), Gaps = 9/80 (11%)

Query: 47  DGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSL 106
           DGLKPV RRIL  + ++    + K  K A ++G+ M  YHPHG+AAI DAL  MA     
Sbjct: 2   DGLKPVQRRILHTLYKI---HDGKLHKVANVAGQTMA-YHPHGDAAIIDALVNMA----N 53

Query: 107 RLLLIEGQGNFGSV-DGDPP 125
           +   ++ QGNFG++  GDP 
Sbjct: 54  KGFFLDCQGNFGNIYTGDPA 73


>gi|169787168|gb|ACA80023.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R          S +  + +  N ++   ++L  +E  ++T+S 
Sbjct: 46  AELLHILNSPERLMEVIREELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSH 105

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G L  +
Sbjct: 106 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWM 162

Query: 866 P 866
            
Sbjct: 163 K 163


>gi|321470330|gb|EFX81307.1| hypothetical protein DAPPUDRAFT_317722 [Daphnia pulex]
          Length = 591

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/404 (19%), Positives = 140/404 (34%), Gaps = 45/404 (11%)

Query: 41  AIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMG--KYHPHGNAAIYDALA 98
           +IP + DGL+P  R++LF   +     +K  V+  +++G V     Y   G A++   + 
Sbjct: 6   SIPSVMDGLRPTQRKVLFTCFK---RNDKDKVEVIKLAGSVAADSAYRE-GEASLMGTII 61

Query: 99  RMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLG----KDT 150
            +AQD+  S  L L+   G FG+    G   A+ RY    L + A F+         K  
Sbjct: 62  GLAQDFVGSNNLNLLVPIGEFGTRHEGGKDAASSRYLSTVLSELARFIFHPSDDPLLKHQ 121

Query: 151 VDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPD 210
           +D          EP       P +L+NG  GI  G   +    N   +VD     +D   
Sbjct: 122 ID-----SNEEIEPESYVPIIPMILINGTSGIGTGGMIDFLKFNPRHIVDFLKQKLDGKQ 176

Query: 211 IDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTE 270
                          P    + G TG      +G       G   +        Q+ +TE
Sbjct: 177 P-------------LPINLWLKGFTGKIEG--SGDNQYTSSGNYAV----LSSTQVEITE 217

Query: 271 IPYQV----NKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQ 326
           +P+ V     K +++EK+     E+    I D ++       +  + +            
Sbjct: 218 LPFGVWTHNYKISVIEKLLRG-SEEMSPLITDFQEHHTGNTVKFTVTMSEAKMRQAKDEG 276

Query: 327 LYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHV 386
           LY+   LQS   +  + L              +    F    +    K     +     +
Sbjct: 277 LYKAFQLQSTHYITSMVLCDPSGSPKIYYSYQQILEDFYPVRLKLYEKRKNYFSGYLQAI 336

Query: 387 LVGLAIAVANLDEVVR--IIRFSPNPETARRELMQRSWNASDIK 428
              L+     + EV+   +I F+        +L  R+++   + 
Sbjct: 337 SKKLSNQFRFVCEVIDDVLIVFNKGNILEVEDLRHRNYDPDPVS 380


>gi|169787150|gb|ACA80014.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL++  RL+ +I+
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLAQIAELLYILANPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  +K++    RRT I     D+  ED I +ED+V T+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEVIKEQYRDERRTEITHNTADINIEDLICQEDVVATLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 54.4 bits (129), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R      +E    +  + +  N ++   ++L  +E  + T+S 
Sbjct: 46  AELLYILANPERLMEVIREELEVIKEQYRDERRTEITHNTADINIEDLICQEDVVATLSH 105

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G L  +
Sbjct: 106 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWM 162

Query: 866 P 866
            
Sbjct: 163 K 163


>gi|4545083|gb|AAD22385.1| DNA gyrase A [Enterobacter aerogenes]
          Length = 45

 Score =  113 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 73  KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNF 117
           K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++GQGNF
Sbjct: 1   KSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNF 45


>gi|169787174|gb|ACA80026.1| GyrA [Pectobacterium wasabiae]
          Length = 163

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAIDTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 57.5 bits (137), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R      +   S +  + +  N ++   ++L  +E  +
Sbjct: 41  LLEQIAELLHILNSPERLMEVIREELEAIDTQYSDERRTEITANTADINIEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R G+G  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|32453410|gb|AAP58317.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453420|gb|AAP59413.1| DNA topoisomerase IV subunit A [Staphylococcus aureus subsp.
           aureus]
          Length = 55

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           HG++++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   HGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 55


>gi|49425333|gb|AAT66027.1| DNA topoisomerase IV subunit A [Corynebacterium jeikeium]
          Length = 58

 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 44/56 (78%)

Query: 80  EVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
           +V G YHP+G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L
Sbjct: 1   DVAGPYHPNGDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKL 56


>gi|169787166|gb|ACA80022.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAINTQYSDGRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 55.6 bits (132), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R          S    + +  N ++   ++L  +E  ++T+S 
Sbjct: 46  AELLHILNSPERLMEVIREELEAINTQYSDGRRTEITANTADINIEDLINQEDVVVTLSH 105

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G L  +
Sbjct: 106 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWM 162

Query: 866 P 866
            
Sbjct: 163 K 163


>gi|169787172|gb|ACA80025.1| GyrA [Pectobacterium wasabiae WPP163]
          Length = 163

 Score =  113 bits (282), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLEQIAELLHILNSPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++  +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAINTQYSDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 56.3 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R          S +  + +  N ++   ++L  +E  +
Sbjct: 41  LLEQIAELLHILNSPERLMEVIREELEAINTQYSDERRTEITANTADINIEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|169787152|gb|ACA80015.1| GyrA [Brenneria alni]
          Length = 163

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   REGRYYLTEQQAQAILDLRLQKLTGLEHERLLDEYKELLAQIAELLYILESPERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL ++K +    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELEAIKAQYSDERRTEITVNTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           G+G+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GRGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 56.0 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R      +   S +  + +  N ++   ++L  +E  ++T+S 
Sbjct: 46  AELLYILESPERLMEVIREELEAIKAQYSDERRTEITVNTADINIEDLINQEDVVVTLSH 105

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R G+G  A  + + + I  L      N +D I+  S +G L  +
Sbjct: 106 QGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWM 162

Query: 866 P 866
            
Sbjct: 163 K 163


>gi|530409|emb|CAA83715.1| DNA gyrase (A) [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 200

 Score =  112 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 13/173 (7%)

Query: 723 GVRGISLAKGDQVISMAIVLHAD----ADYDERICYMKHMSAQRRLISGDTEEITSLKND 778
           G + I+L + DQ++S+      D    A+   ++  +K      +   G       L+ +
Sbjct: 17  GKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLETN 76

Query: 779 SSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEI 838
             V G IS  +          I TVS KG  K+T   D+RIS R+GKGI+  ++++    
Sbjct: 77  DVVVGAISSFKLT-------HITTVSNKGLFKKTPIDDYRISGRNGKGIKVMNLNQR--T 127

Query: 839 GALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           G   A+    + D I+++S  G LI+  V+ I   SR   GV     A  + +
Sbjct: 128 GKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRLADXQEI 180



 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 3/177 (1%)

Query: 656 NVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
            ++R K+S+F  INR+GK A+ L   D+++SV   T ++ I +  + G+ +R   S +  
Sbjct: 1   MIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKESVVNP 60

Query: 716 FAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSL 775
              R   GVR + L   D V+    +      +   +                +      
Sbjct: 61  -QSRVGSGVRALKLETNDVVVGA--ISSFKLTHITTVSNKGLFKKTPIDDYRISGRNGKG 117

Query: 776 KNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
               ++     + +      +   IL +S  G   +T   +    +R+  G++A  +
Sbjct: 118 IKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAIRL 174



 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             KRT   +F   NR+GK  +A ++ +      LV+VF     D I + ++ G +IR+  
Sbjct: 1   MIKRTKISEFENINRNGK--KAINLRE---NDQLVSVFATTGQDTIFIANESGKVIRIKE 55

Query: 868 NEIRIASRATKGVVIFSTAKDERVVSV 894
           + +   SR   GV       ++ VV  
Sbjct: 56  SVVNPQSRVGSGVRALKLETNDVVVGA 82



 Score = 55.6 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/192 (18%), Positives = 79/192 (41%), Gaps = 15/192 (7%)

Query: 547 YVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRL 606
            +KR  +S +    R GK    + +R+ D +  +F  +   ++   +  G V +    + 
Sbjct: 1   MIKRTKISEFENINRNGKK--AINLRENDQLVSVFATTGQDTIFIANESGKVIRI---KE 55

Query: 607 PIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDF- 665
            + +PQ+R  + +  L L   + +   +       S+   ++   +  G  ++  + D+ 
Sbjct: 56  SVVNPQSRVGSGVRALKLETNDVVVGAIS------SFKLTHITTVSNKGLFKKTPIDDYR 109

Query: 666 -IQINRSGKIAMKLDSRDEILSVETC-TQENDILLTTKLGQCVRFPISAIRVFAGRNSVG 723
               N  G   M L+ R           + + IL+ +  G  ++  +S I   + RN+ G
Sbjct: 110 ISGRNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLS-RNASG 168

Query: 724 VRGISLAKGDQV 735
           V+ I LA   ++
Sbjct: 169 VKAIRLADXQEI 180


>gi|71842510|gb|AAZ43362.1| GyrA [Escherichia coli]
          Length = 52

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 40/52 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
             +G +WNK Y K AR+ G+V+GKYHPHG+ A+YD + RMAQ +SLR +L++
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVD 52


>gi|297850918|ref|XP_002893340.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339182|gb|EFH69599.1| hypothetical protein ARALYDRAFT_313269 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 951

 Score =  112 bits (280), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/312 (22%), Positives = 129/312 (41%), Gaps = 35/312 (11%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWN-KKYVKCARISGEVMGK--YHPHGNAAIYDA 96
           R+IP++ DGLKP  R+ LF      +  + K   K + ++   + +  Y+ HG  ++   
Sbjct: 638 RSIPEMIDGLKPGQRKTLF----CSLARDWKTECKVSVLTAHAIDRSDYN-HGEQSLAST 692

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVD 152
           + +MAQD+  S  + L+   G FGS    G   A+ RY    +  A   L        + 
Sbjct: 693 IIKMAQDYVGSSNVNLLLPMGQFGSQIFGGQDAASARYLYTMISPATRALFHKDDDVLLA 752

Query: 153 FRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDID 212
           +    +    EP       P VLVNG  GI  G +T +P ++  +V+   + ++    ++
Sbjct: 753 WMDGDNQRMIEPKWYIPIIPTVLVNGCEGIGTGWSTFVPKYSTKDVIKNIMRLMSGEALE 812

Query: 213 LDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIP 272
                     P  P+        G K       G  + +GV    + +     I +TE+P
Sbjct: 813 ----------PMVPS------YRGFKGTITETEGGFITKGV---FEKNIQNSTIRITELP 853

Query: 273 YQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTS 332
            + + +   + +  L  E++   I ++RD S R    +++ L R    ++    +Y    
Sbjct: 854 IK-HLSNYKKFLHVLKTEEKF--IKEIRDNSSRSSIDILLTLSRENM-EIADEDIYTKLK 909

Query: 333 LQSLFSVNMVAL 344
           L++      + L
Sbjct: 910 LRTKILTTNMNL 921


>gi|169787144|gb|ACA80011.1| GyrA [Brenneria quercina]
 gi|169787146|gb|ACA80012.1| GyrA [Brenneria quercina]
 gi|169787148|gb|ACA80013.1| GyrA [Brenneria nigrifluens]
          Length = 163

 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 64  EELELIRDQFGDKRRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLEQIAELLRILGSSERLMEVIREELELIRDQFGDKRRTEITANSADINIEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|116282953|gb|ABJ97452.1| topoisomerase IV subunit A [Neisseria gonorrhoeae]
          Length = 51

 Score =  112 bits (279), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 34/51 (66%)

Query: 94  YDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLD 144
           Y A+ RMAQD++LR  L +G GNFGS DGD  AA RYTE RL   A  LL 
Sbjct: 1   YGAMVRMAQDFTLRYPLNDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLS 51


>gi|169787188|gb|ACA80033.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TLIRVP 866
            +  + 
Sbjct: 158 RVYWMK 163


>gi|309807647|ref|ZP_07701589.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169113|gb|EFO71189.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 01V1-a]
          Length = 323

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 124/373 (33%), Gaps = 72/373 (19%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  ED+ V VS  GY+KR  L  Y++      G         D V     VST +++  
Sbjct: 1   MLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYI 55

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +    V+ L     +  G+ L   + L   ERI   +   +  +  ++L  +  
Sbjct: 56  FTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLIFLIT 112

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAM---KLDSRDEILSVE---TCTQENDILLTTKLGQC 705
           T  G +++  LSD          A+   KL      + +        +N+ILL T     
Sbjct: 113 TNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSDSDNEILLVTNNAYA 172

Query: 706 VRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF ++ +    G  + GV+ I+L    D V+S         +  +              
Sbjct: 173 LRFDVNEV-PLVGPRAAGVKSINLKNDDDYVVSAITFDPKCLNSLKLG------------ 219

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISN 821
                                                 V+++G  K+        F  + 
Sbjct: 220 -------------------------------------IVTQRGAFKQLQVDLVNKFTRAK 242

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R    +R            +VA      N  I + +     I++  N+  +  R + G  
Sbjct: 243 RGSMILRELKTKPH----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSF 298

Query: 882 IFSTAKDERVVSV 894
           +  T  D   V++
Sbjct: 299 VVDTISDGVPVAL 311


>gi|169787136|gb|ACA80007.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  111 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYWMK 163



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELIREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TLIRVP 866
            +  + 
Sbjct: 158 RVYWMK 163


>gi|321473423|gb|EFX84390.1| hypothetical protein DAPPUDRAFT_30330 [Daphnia pulex]
          Length = 547

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 93/501 (18%), Positives = 161/501 (32%), Gaps = 52/501 (10%)

Query: 14  KGITSVSITDEMQNSYLTYAI--NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           K I  VS  D ++   + +     V   R++P + DG     R+ L+  ++   +     
Sbjct: 80  KDIKEVSYHDFVKKDLIRFRNMEYV---RSVPSIMDGFNERQRKTLYTCIKRDYKEEINV 136

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            + A    E    Y P  +  I   +  +AQD+  S  + L+   G F S   +     +
Sbjct: 137 AQLAVSVAENCAYYQP--DLLI-GTITGLAQDFVGSNNINLLIPNGQFASRHLESKDVGS 193

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGM 186
             Y    + K    +        + +R   DG+   EP       P VLVNG  GI  G 
Sbjct: 194 PDYIFTMMSKITRKIFHPRDDPLLKYRT--DGNQSIEPEYFAPIIPMVLVNGANGIGTGF 251

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            T IP  N  E+++    +++               P  P      G     +       
Sbjct: 252 KTKIPKQNPREIIENLKRMLNGEK----------PNPMDPWFKGYRGTVERIDQLNF--- 298

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDES 303
                 V   E        I +TE+P  V      + + E +    E+    I D ++  
Sbjct: 299 ------VISGELAVLSPTTIEITELPVDVPTENYKKSVLEKLLCGSEECPPIITDYQEHH 352

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                R V+ +       V     +R   LQS++S+  + L        T   +      
Sbjct: 353 TDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVDDIMNE 412

Query: 364 FREEVVV-RRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQR 420
           F E  +   R +      +  A     L      L E+    +I  S        E ++R
Sbjct: 413 FYEVRLELYRKRRDYFSGKVEALRAR-LVNQNNFLTEISSKVLIVDSEKKFDVLLEELRR 471

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
              A D     +   +    + + G         + + +L +   T  G+     +    
Sbjct: 472 RNYAPDPLIAWEKKSNCDVGVANVGCY-------QYLHQLPIRFQTNEGKQAYLAKKIK- 523

Query: 481 GIEIKECLDILS-SRSRLLGI 500
             EI+EC  +   S   L   
Sbjct: 524 --EIRECELLSDPSPEDLWRR 542


>gi|321473409|gb|EFX84376.1| hypothetical protein DAPPUDRAFT_670 [Daphnia pulex]
          Length = 667

 Score =  111 bits (278), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 82/433 (18%), Positives = 143/433 (33%), Gaps = 41/433 (9%)

Query: 14  KGITSVSITDEMQNSYLTY-AI-NVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
           K I  VS  D ++   + +  +  V   R++P + DG     R+ L+  ++   +     
Sbjct: 263 KDIKEVSYHDFVKKDLIRFRNMEYV---RSVPSIMDGFNERQRKTLYTCIKRDYKEEINV 319

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAA 127
            + A    E    Y P  +  I   +  +AQD+  S  + L+   G F S   +     +
Sbjct: 320 AQLAVSVAENCAYYQP--DLLI-GTITGLAQDFVGSNNINLLIPNGQFASRHLESKDVGS 376

Query: 128 ERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGM 186
             Y    + K    +        + +R   DG+   EP       P VLVNG  GI  G 
Sbjct: 377 PDYIFTMMSKITRKIFHPRDDPLLKYRT--DGNQSIEPEYFAPIIPMVLVNGANGIGTGF 434

Query: 187 ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
            T IP  N  E+++    +++               P  P      G     +       
Sbjct: 435 KTKIPKQNPREIIENLKRMLNGEK----------PNPMDPWFKGYRGTVERIDQLNF--- 481

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDES 303
                 V   E        I +TE+P  V      + + E +    E+    I D ++  
Sbjct: 482 ------VISGELAVLSPTTIEITELPVDVPTENYKKSVLEKLLCGSEECPPIITDYQEHH 535

Query: 304 DRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVA 363
                R V+ +       V     +R   LQS++S+  + L        T   +      
Sbjct: 536 TDNNVRFVVTMTEKMMQQVESEGFHRAFKLQSVYSLRSMLLYDSNGSLKTYNSVDDIMNE 595

Query: 364 FREEVVV-RRTKYLLNKARDRAHVLVGLAIAVANLDEVVR--IIRFSPNPETARRELMQR 420
           F E  +   R +      +  A +   L      L E+    +I  S   +    EL +R
Sbjct: 596 FYEVRLELYRKRRDYFSGKVEA-LRARLVNQNNFLTEISSKVLIVDSEKFDVLLEELRRR 654

Query: 421 SWNASDIKDLIDL 433
           ++    +      
Sbjct: 655 NYAPDPLIAWEKK 667


>gi|169787134|gb|ACA80006.1| GyrA [Erwinia mallotivora]
          Length = 163

 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSSDRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSSDRLMEVIREELELIREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|169787158|gb|ACA80018.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLRILGSSDRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 64  EELELIRDQFGDKRRTEITANSADINMEDLINQEDVVVTLSHQGYVKYQPLTEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 57.1 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       +    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLEQIAELLRILGSSDRLMEVIREELELIRDQFGDKRRTEITANSADINMEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLTEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|282599156|ref|YP_003359073.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
 gi|257219226|gb|ACV50241.1| gp52 topoisomerase II medium subunit [Deftia phage phiW-14]
          Length = 449

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 23/259 (8%)

Query: 17  TSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR 76
             +SI+  +Q  +  YA      R IP + DGLKP  R+I+   ++      K+ VK A 
Sbjct: 2   KEISISQHIQGDHKAYATYD-NQRNIPHIADGLKPSLRKIIHTAIET--MRGKEEVKVAA 58

Query: 77  I---SGEVMGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGS-VDGDPPAAERY 130
           +   + + + +Y  HG  +I DA+  + +++  +  L L++ QG FG+ VD D  +  RY
Sbjct: 59  LGSRASD-LTEY-GHGEDSIIDAVVTLGRNYRGTNNLPLLQKQGQFGTMVDND-ASEPRY 115

Query: 131 TEC-RLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATN 189
               R    +H    +  +  +DF+ + +G   EPV      P VL+N   G+  G ++ 
Sbjct: 116 IHVSRHANLSH-CFKEEDRAILDFQVS-EGKTIEPVFFLPPLPLVLINASSGVGNGYSSK 173

Query: 190 IPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPD---FPTGAVILGRTGIKNAYATGRG 246
           I   +   +++   A+++   I+ +  +    G       TG       G        + 
Sbjct: 174 ILPRSPQALIEMSKAILNETPINPEWSLPHFPGFKGRVKATGPCSYEIHGAIQLNPKAKT 233

Query: 247 SIVI-----RGVSHIEKTS 260
              I           E+  
Sbjct: 234 EFTIIDLPPDSKYQYEQFK 252


>gi|169787190|gb|ACA80034.1| GyrA [Pantoea stewartii]
          Length = 163

 Score =  111 bits (277), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 105/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L ILSS  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILSSSERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELMRDQFGDDRRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +       + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLHILSSSERLMEVIREELELMRDQFGDDRRTEITANSADINIEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|308743033|gb|ADO39959.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score =  111 bits (276), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|169787140|gb|ACA80009.1| GyrA [Erwinia psidii]
 gi|169787142|gb|ACA80010.1| GyrA [Erwinia psidii]
          Length = 163

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I E + IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELIYILESAERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I  ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIRDQFGDQRRTEITANSADINIEDLINEEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 58.3 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +L   A+    +   + +    R       +    +  + +  N ++   ++L  +E  
Sbjct: 40  ALLEQIAELIYILESAERLMEVIREELELIRDQFGDQRRTEITANSADINIEDLINEEDV 99

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +
Sbjct: 100 VVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSR 156

Query: 860 GTLIRVP 866
           G L  + 
Sbjct: 157 GRLYWMK 163


>gi|218507099|ref|ZP_03504977.1| DNA gyrase subunit A [Rhizobium etli Brasil 5]
          Length = 97

 Score =  111 bits (276), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/97 (69%), Positives = 83/97 (85%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGR 245
           MATNIP HNL EV+DGC+A+I++P I+L  LM+II GPDFPTGA ILGR GI++AY TGR
Sbjct: 1   MATNIPPHNLSEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKILGRAGIRSAYETGR 60

Query: 246 GSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLE 282
           GS+++RGV+ IE   GDREQI++TEIPYQVNKA M+E
Sbjct: 61  GSVIMRGVAAIEPMRGDREQIIITEIPYQVNKATMIE 97


>gi|169787194|gb|ACA80036.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMKVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +    +  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLHILGSSERLMKVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|85376453|gb|ABC70469.1| DNA topoisomerase IV subunit A [Listonella anguillarum]
          Length = 49

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 3/50 (6%)

Query: 84  KYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP--AAERYT 131
           KYHPHG++A Y+A+  MAQ +S R  L++GQGN+G+ D DP   AA RYT
Sbjct: 1   KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 49


>gi|169787192|gb|ACA80035.1| GyrA [Pantoea ananatis]
          Length = 163

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   REGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQIAELLHILGSSERLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELMRDQFGDERRTEITANSADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +   + +    R       +    +  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLHILGSSERLMEVIREELELMRDQFGDERRTEITANSADINIEDLINQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRG 157

Query: 861 TLIRVP 866
            L  + 
Sbjct: 158 RLYWMK 163


>gi|297803548|ref|XP_002869658.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315494|gb|EFH45917.1| hypothetical protein ARALYDRAFT_329101 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1089

 Score =  110 bits (275), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 81/446 (18%), Positives = 153/446 (34%), Gaps = 57/446 (12%)

Query: 30   LTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY---VKCARISGEVMGK-Y 85
            L +A   IL R+IP L DG +   R++++ + +   E N  +   +K  +++  V     
Sbjct: 642  LIFAAQAILERSIPSLIDGFRLAQRKVVYSLFKREQEANVNFEEKIKVTQLASYVSEHAA 701

Query: 86   HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV------DGDPPAAERYTECRLQK 137
            H H   ++   + RMAQ +  S  + L++    FGS       D D     RY    L  
Sbjct: 702  HHHCERSLSRTIIRMAQTFVGSNNVNLLQPFCLFGSRASGGTHDVD----ARYIHTLLSS 757

Query: 138  AAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGE 197
                L+     D +++   + G  + P       P VLVNG   + +G    IP+++   
Sbjct: 758  ITRLLIHKDDDDILEYHNVF-GRKRHPECFLPIMPMVLVNGSQSVGMGWNRFIPSYDPRV 816

Query: 198  VVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIE 257
            +      ++                P  P      G     ++             + I 
Sbjct: 817  ISSNIKRLLRGETQT----------PMLPWYRNFKGDIKQVSSNEY--------TTTGIY 858

Query: 258  KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG 317
              +     I +TE+P  V     L+ +  L   K+   I   +++SD     + + L   
Sbjct: 859  DVNDKDRSIRITELPVHVWTMNYLKVLERL---KKHSVIEGYKNDSDNTSIDIKLSLSEE 915

Query: 318  ASA----DVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRT 373
                   +    +L R ++     +++++       +  +   IL+ F   R  +   R 
Sbjct: 916  QMKRFLNEKNPRKLLRLSTTIRTNNMHLLNRFNVLTKYESPDKILEEFFEERLNMYRVR- 974

Query: 374  KYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDL 433
                     + H++  L      L+  V I +   N E      +         K     
Sbjct: 975  ---------KEHMVQILTFERDKLECKVAIFQRVLNGEINIALNLDAVLQEKGFKKYGKT 1025

Query: 434  IDDSSYTIGSDGTMYLSEVQTRAILE 459
            I+D   +       YL+E     I +
Sbjct: 1026 INDRFPSYD-----YLTEDLMSMIRD 1046


>gi|186659436|dbj|BAG30949.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score =  110 bits (275), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 38/52 (73%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y +  RMAQ +SLR 
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRY 52


>gi|309806045|ref|ZP_07700068.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167564|gb|EFO69720.1| putative DNA topoisomerase IV subunit A [Lactobacillus iners
           LactinV 03V1-b]
          Length = 330

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/373 (18%), Positives = 124/373 (33%), Gaps = 72/373 (19%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  ED+ V VS  GY+KR  L  Y++      G         D V     VST +++  
Sbjct: 1   MLSEEDVRVLVSANGYLKRSSLRSYQSTDSADNGLP-----SGDEVIFDKTVSTLSNLYI 55

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F++ G +    V+ L     +  G+ L   + L   ERI   +   +  +  ++L  +  
Sbjct: 56  FTNKGNLIYRPVYELVDTKWRETGQHLSQEIVLTNDERI---ISVFDINNLNSDLIFLIT 112

Query: 652 TKHGNVRRNKLSDFIQINRSGKIAM---KLDSRDEILSVE---TCTQENDILLTTKLGQC 705
           T  G +++  LSD          A+   KL      + +        +N+ILL T     
Sbjct: 113 TNDGYIKQVALSDLQPTRTYKSRAIMVIKLKDDHSNVLMVEQLKSGSDNEILLVTNSAYA 172

Query: 706 VRFPISAIRVFAGRNSVGVRGISLA-KGDQVISMAIVLHADADYDERICYMKHMSAQRRL 764
           +RF ++ +    G  + GV+ I+L    D V+S         +  +              
Sbjct: 173 LRFDVNEV-PLVGPRAAGVKSINLKNDDDYVVSAITFDPECLNSLKLG------------ 219

Query: 765 ISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSY---DFRISN 821
                                                 V+++G  K+        F  + 
Sbjct: 220 -------------------------------------IVTQRGAFKQLQVDLVNKFTRAK 242

Query: 822 RSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVV 881
           R    +R            +VA      N  I + +     I++  N+  +  R + G  
Sbjct: 243 RGSMILRELKTKPH----RIVAALIYTQNHDINIKTSSDRTIKIRTNDYPVGDRYSNGSF 298

Query: 882 IFSTAKDERVVSV 894
           +  T  D   V++
Sbjct: 299 VVDTISDGVPVAL 311


>gi|71842508|gb|AAZ43361.1| GyrA [Escherichia coli]
          Length = 52

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 40/52 (76%)

Query: 61  MQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
             +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y+ + RMAQ +SLR +L++
Sbjct: 1   YVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVD 52


>gi|308743037|gb|ADO39961.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 41/47 (87%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ARI G+V+GKYHPHG+ A+Y+ + RMAQ++++R +LI+GQGNFGSV
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|169787186|gb|ACA80032.1| GyrA [Pantoea agglomerans]
          Length = 163

 Score =  110 bits (274), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 74/160 (46%), Positives = 106/160 (66%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E  +L  +I E L ILS+  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQIAELLRILSNADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PL+ Y AQRRG
Sbjct: 64  EELELMRDQFGDERRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLTDYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH ++L FSS G +Y  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMK 163



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 3/127 (2%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
            +L   A+    +     +    R       +    +  + +  N ++   ++L  +E  
Sbjct: 40  ALLEQIAELLRILSNADRLMEVIREELELMRDQFGDERRTEITANTADINIEDLINQEDV 99

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           ++T+S +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +
Sbjct: 100 VVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSR 156

Query: 860 GTLIRVP 866
           G L  + 
Sbjct: 157 GRLYWMK 163


>gi|4140432|gb|AAD04051.1| DNA gyrase subunit A [Chlamydia trachomatis]
          Length = 55

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 41/55 (74%)

Query: 116 NFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAR 170
           NFGS+DGDP AA RYTE RL  +A FLL+DL KDTVD  PNYD +  EPVV  ++
Sbjct: 1   NFGSIDGDPAAAMRYTEARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSK 55


>gi|308743035|gb|ADO39960.1| GyrA [Neisseria gonorrhoeae]
          Length = 47

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSV 120
            ARI G+V+GKYHPHG+ A+Y  + RMAQ++++R +LI+GQGNFGSV
Sbjct: 1   SARIVGDVIGKYHPHGDFAVYATIVRMAQNFAMRYVLIDGQGNFGSV 47


>gi|121883|sp|P21557|GYRA_HALSQ RecName: Full=DNA gyrase subunit A
 gi|149025|gb|AAB09606.1| DNA gyrase subunit A [Haloferax lucentense]
          Length = 82

 Score =  109 bits (273), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 3/82 (3%)

Query: 1  MTEHIISSDEEEEK---GITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRIL 57
          M+     S E        + +  I DEM+ SY+ YA++VI GRA+PD+RDGLKPVHRRIL
Sbjct: 1  MSSDAPDSFEPGAGIAAEVKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRIL 60

Query: 58 FGMMQMGVEWNKKYVKCARISG 79
          + M Q GV  N  + K + I G
Sbjct: 61 YAMHQAGVTSNSSHRKSSSIVG 82


>gi|328791048|ref|XP_001119985.2| PREDICTED: DNA topoisomerase 2 [Apis mellifera]
          Length = 1447

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 83/454 (18%), Positives = 154/454 (33%), Gaps = 100/454 (22%)

Query: 13   EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
            EK   +VS +D +    + Y+    + R+IP++ DG KP  R++L+  ++     +K+ V
Sbjct: 677  EKDTRTVSFSDFINVELVLYSNYDNV-RSIPNMIDGFKPGQRKVLYTCLK---RNDKREV 732

Query: 73   KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
            K A+++G V     YH HG  ++   +  +AQ++  S  + L++  G FG+    G   A
Sbjct: 733  KVAQLAGSVAEHSAYH-HGEVSLMSTIINLAQNFVGSNNINLLQPIGQFGTRLAGGKDAA 791

Query: 127  AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGM 186
            + RY           +L  +      + PNY                             
Sbjct: 792  SPRYIFT--------MLRYI------YIPNY----------------------------- 808

Query: 187  ATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRG 246
                                 NP   ++ L  ++ G D            +   Y   +G
Sbjct: 809  ---------------------NPREIIENLYRMMDGAD---------PKPMVPYYKNFKG 838

Query: 247  SIVIRGVSHI----EKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADL 299
             I   G        E +    ++I +TE+P         E + E +    +K    I D 
Sbjct: 839  VIESCGDFRYIINGEISVIGPDKIEITELPIGTWTQTYKETVLEPMLHGTDKTPATITDY 898

Query: 300  RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILK 359
            ++ +       +I L R    D+  + L++   LQ+  +V  +              +L+
Sbjct: 899  KEYNTDTAVHFIIMLNRDKLLDLERDGLHKAFKLQTTMTVTSMCAFDENQCLQKYDSVLQ 958

Query: 360  AFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV-ANLDEVVRIIRFSPNPETARRELM 418
                F         K  L     R   L G+  A  + L    R I    +         
Sbjct: 959  ILKGF--------YKVRLEMYHKRKEYLEGILQAEASKLSNQARFIVEKCDGTIVIENKK 1010

Query: 419  QRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEV 452
            ++   A  I+   +     ++ +  +    L EV
Sbjct: 1011 RKDMIAELIRREYESDPVLAWKLSQNREEVLEEV 1044


>gi|76664751|emb|CAJ17814.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 71

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/68 (60%), Positives = 53/68 (77%)

Query: 161 FQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII 220
            +EP+VL    PN+L+NG  GIAVGMAT IPTHNLGEV+DG ++ I N +I ++ LM+ I
Sbjct: 1   EKEPLVLPTALPNLLINGATGIAVGMATKIPTHNLGEVIDGIISYIHNKNISINQLMQHI 60

Query: 221 RGPDFPTG 228
           +GPDFPTG
Sbjct: 61  KGPDFPTG 68


>gi|32453408|gb|AAP58316.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 55

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 88  HGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           HG+ ++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   HGDYSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 55


>gi|262190159|ref|ZP_06048441.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
 gi|262033950|gb|EEY52408.1| topoisomerase IV subunit A [Vibrio cholerae CT 5369-93]
          Length = 381

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 88/420 (20%), Positives = 157/420 (37%), Gaps = 56/420 (13%)

Query: 387 LVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGT 446
           + GL IA  NLDEV+ IIR   +P   +  LM R                          
Sbjct: 1   MQGLLIAYLNLDEVIEIIRNEDDP---KAVLMAR-------------------------- 31

Query: 447 MYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELL 506
             L+++Q  AIL+ +L  L  L    IR E + L  E K+  ++L S  RL  ++K+E+ 
Sbjct: 32  FDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIK 91

Query: 507 SVKDELDTPRRTRIVEGLLDM--EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           +  D+    RR+ +VE        + D +  E + V +S  G++        R  +    
Sbjct: 92  ADADKFGDDRRSPLVEREEAKALTERDLMPSEAITVVLSEKGWI--------RHAKGHDV 143

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSL 624
               +  +  D         ++   +F  S G  Y  +   LP    + +G+ +   L++
Sbjct: 144 DCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSA--RGQGEPITGRLNV 201

Query: 625 NQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684
            +G  I  ++   ED+        +  +  G     K  D +  NRSGK  + L    E+
Sbjct: 202 AEGTTIRQVVMGEEDQLW------LVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEV 255

Query: 685 LSVETCT--QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISL-----AKGDQVIS 737
           ++ +       ++IL  T  G+ + FPI  +   +     G + I++        ++V+S
Sbjct: 256 MTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS--KGKGNKIINIPAAKAKTREEVLS 313

Query: 738 MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
             +VL   A         K       L +   E              ++    +     E
Sbjct: 314 NLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQRVTAIEIETSAEPE 373



 Score = 53.6 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 202 AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 261

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 262 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 299


>gi|175941425|gb|ACB72667.1| GyrA [Streptomyces sp. Bd 205]
          Length = 180

 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 26/204 (12%)

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM     
Sbjct: 3   HQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM----- 57

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                G + + E+Q  AILE++L RL  L    I  E + L  +
Sbjct: 58  ---------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAK 96

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VVT+S
Sbjct: 97  INEYNAILASPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTIS 156

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRS 567
             GYVKR     YR+Q+RGGKG  
Sbjct: 157 RSGYVKRTKTDDYRSQKRGGKGVR 180



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 35/88 (39%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y+  +   +              E       S +     +   ++L  +E  +
Sbjct: 93  LQAKINEYNAILASPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIV 152

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +T+S  G+ KRT + D+R   R GKG+R
Sbjct: 153 VTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|169787176|gb|ACA80027.1| GyrA [Pectobacterium atrosepticum SCRI1043]
          Length = 163

 Score =  109 bits (272), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 104/160 (65%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILNSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILNSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TL 862
            +
Sbjct: 158 RV 159


>gi|175941435|gb|ACB72672.1| GyrA [Streptomyces sp. Md 063]
          Length = 180

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 109/204 (53%), Gaps = 26/204 (12%)

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   + AR  LM     
Sbjct: 3   HQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIVLIRRSKTVKIAREGLM----- 57

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                G + + E+Q  AIL+++L RL  L    I  E + L  +
Sbjct: 58  ---------------------GLLEIDEIQANAILDMQLRRLAALEHQKITAEHDELQAK 96

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+S  R   I+++EL ++ ++    RR+++V    DM  ED I  ED+VVT+S
Sbjct: 97  INEYNAILASPERQRQIVREELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVVTIS 156

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRS 567
             GYVKR     YR+Q+RGGKG  
Sbjct: 157 RSGYVKRTKTDDYRSQKRGGKGVR 180



 Score = 56.7 bits (135), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 36/88 (40%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y+  +   +      R       E       S +     +   ++L  +E  +
Sbjct: 93  LQAKINEYNAILASPERQRQIVREELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIV 152

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           +T+S  G+ KRT + D+R   R GKG+R
Sbjct: 153 VTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|169787154|gb|ACA80016.1| GyrA [Brenneria rubrifaciens]
 gi|169787160|gb|ACA80019.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787162|gb|ACA80020.1| GyrA [Pectobacterium carotovorum subsp. carotovorum]
 gi|169787178|gb|ACA80028.1| GyrA [Pectobacterium atrosepticum]
 gi|169787180|gb|ACA80029.1| GyrA [Pectobacterium carotovorum subsp. odoriferum]
 gi|169787182|gb|ACA80030.1| GyrA [Erwinia chrysanthemi]
 gi|169787184|gb|ACA80031.1| GyrA [Erwinia chrysanthemi]
          Length = 163

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TL 862
            +
Sbjct: 158 RV 159


>gi|169787138|gb|ACA80008.1| GyrA [Erwinia rhapontici]
          Length = 163

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 75/160 (46%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  ++++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELIREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELIREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TL 862
            +
Sbjct: 158 RV 159


>gi|169787156|gb|ACA80017.1| GyrA [Pectobacterium cypripedii]
          Length = 163

 Score =  109 bits (271), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TL 862
            +
Sbjct: 158 RV 159


>gi|169787164|gb|ACA80021.1| GyrA [Pectobacterium betavasculorum]
          Length = 163

 Score =  108 bits (270), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 103/160 (64%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V+++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R       E    K  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TL 862
            +
Sbjct: 158 RV 159


>gi|186659434|dbj|BAG30948.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 54

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 57  LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRL 108
           L+ M  +G +WNK Y K AR+ G+V+GKYHPHG+ A+Y +  RMAQ +SLRL
Sbjct: 1   LYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDFAVYGSSVRMAQPFSLRL 52


>gi|190350975|dbj|BAB13754.2| type II DNA topoisomerase [Pichia guilliermondii]
          Length = 782

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 12/159 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  I  + I++ +    + +++   + R+IP + DG KP  R++L+G  +  +      +
Sbjct: 629 DPQIREIPISEFINKELILFSMADNV-RSIPSILDGFKPGQRKVLYGCFKRNLRSE---I 684

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K A++ G +     YH HG  ++   +  +AQ++  +  L L++  G FGS    G   +
Sbjct: 685 KVAQLVGYISEHTGYH-HGEGSLAQTIVGLAQNFVGANNLNLLQPIGLFGSRAAGGKDFS 743

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           A RY    +      + + L  D   +  + D    EP 
Sbjct: 744 AVRYIHTNITDLTRVIFNPLDDDLYTYVQD-DAQTVEPE 781


>gi|167465536|ref|ZP_02330625.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 86

 Score =  108 bits (269), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 824 GKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
           GKGI+  +V+  N  G +V +  V +++ +++++  GT+IR  ++ I I  R T+GV + 
Sbjct: 1   GKGIKTLNVTSKN--GPVVGLKVVEEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLI 58

Query: 884 STAKDERVVSVERI 897
           +T +D+ V +V R+
Sbjct: 59  NTREDDEVATVTRV 72



 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
           ++ ++   ++ D+++ T  G  +R  +S I +  GRN+ GVR I+  + D+V 
Sbjct: 16  VVGLKVVEEDEDLMIITASGTVIRTSMSGISIM-GRNTQGVRLINTREDDEVA 67



 Score = 38.6 bits (88), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 24/47 (51%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGAL 841
            +++ ++ ++  G   RTS     I  R+ +G+R  +  + +E+  +
Sbjct: 23  EEDEDLMIITASGTVIRTSMSGISIMGRNTQGVRLINTREDDEVATV 69


>gi|175941431|gb|ACB72670.1| GyrA [Streptomyces sp. Md 005]
 gi|175941433|gb|ACB72671.1| GyrA [Streptomyces sp. Md 039]
          Length = 180

 Score =  107 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 76/204 (37%), Positives = 108/204 (52%), Gaps = 26/204 (12%)

Query: 364 FREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWN 423
            + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM     
Sbjct: 3   HQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM----- 57

Query: 424 ASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIE 483
                                G + + E+Q  AILE++L RL  L    I  E + L  +
Sbjct: 58  ---------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDELQAK 96

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E   IL+S  R   I+ +EL ++ ++    R +++V    DM  ED I +ED+V+T+S
Sbjct: 97  INEYNAILASPERQRQIVSEELAAIVEKFGDDRCSKLVPFYGDMSIEDLIAKEDIVLTIS 156

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRS 567
             GYVKR     YR+Q+RGGKG  
Sbjct: 157 RSGYVKRTKTDDYRSQKRGGKGVR 180



 Score = 58.6 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y+  +   +              E       S +     +   ++L  KE  +
Sbjct: 93  LQAKINEYNAILASPERQRQIVSEELAAIVEKFGDDRCSKLVPFYGDMSIEDLIAKEDIV 152

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIR 828
           LT+S  G+ KRT + D+R   R GKG+R
Sbjct: 153 LTISRSGYVKRTKTDDYRSQKRGGKGVR 180


>gi|155676194|gb|ABU25360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 52

 Score =  107 bits (268), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%)

Query: 58  FGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLL 110
           + M  +G +WNK Y K AR+ G+V+GKYHPHG++A+YD+  RMAQ +SL   L
Sbjct: 1   YAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDSSVRMAQPFSL--PL 51


>gi|290578681|gb|ADD51237.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578683|gb|ADD51238.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578685|gb|ADD51239.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTITV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|32453412|gb|AAP58318.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score =  107 bits (267), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   GDSSVYKAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 54


>gi|290578697|gb|ADD51245.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  107 bits (267), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKAKLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|175941427|gb|ACB72668.1| GyrA [Streptomyces sp. Fd 004]
          Length = 173

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 103/199 (51%), Gaps = 26/199 (13%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420
           +V  + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM  
Sbjct: 1   WVTHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLM-- 58

Query: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                                   G + + E+Q  AILE++L RL  L    I  E + L
Sbjct: 59  ------------------------GLLEIDEIQANAILEMQLRRLAALEHQKITAEHDEL 94

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
             +I E   IL S  R   I+ +EL ++ ++    RR+++V    DM  ED I  ED+VV
Sbjct: 95  QAKINEYNAILVSPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIVV 154

Query: 541 TVSHLGYVKRVPLSVYRAQ 559
           T+S  GYVKR     YR+Q
Sbjct: 155 TISRGGYVKRTKTDDYRSQ 173



 Score = 39.8 bits (91), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y+  +   +              E       S +     +   ++L  +E  +
Sbjct: 94  LQAKINEYNAILVSPERQRQIVSEELAAIVEKFGDDRRSKLVPFDGDMSIEDLIAEEDIV 153

Query: 801 LTVSEKGFGKRTSSYDFRIS 820
           +T+S  G+ KRT + D+R  
Sbjct: 154 VTISRGGYVKRTKTDDYRSQ 173


>gi|32453414|gb|AAP58319.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
 gi|32453418|gb|AAP58321.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 54

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFL 142
           G+ ++Y+A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  L
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEEL 54


>gi|290578687|gb|ADD51240.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578689|gb|ADD51241.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578691|gb|ADD51242.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578693|gb|ADD51243.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578695|gb|ADD51244.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578699|gb|ADD51246.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578703|gb|ADD51248.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578705|gb|ADD51249.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578707|gb|ADD51250.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578709|gb|ADD51251.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578711|gb|ADD51252.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578713|gb|ADD51253.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578715|gb|ADD51254.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578717|gb|ADD51255.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/119 (53%), Positives = 94/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++GI++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSGIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|169787170|gb|ACA80024.1| GyrA [Pectobacterium carotovorum subsp. brasiliensis]
          Length = 163

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 102/160 (63%)

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            DG  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL S  RL+ +I+
Sbjct: 4   RDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIR 63

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +EL  V ++    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRG
Sbjct: 64  EELELVDEQFGDERRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRG 123

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEK 602
           GKG+S   +++EDF+  L + +TH  +L FSS G VY  K
Sbjct: 124 GKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMK 163



 Score = 60.2 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 50/122 (40%), Gaps = 3/122 (2%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +L   A+    +     +    R      +E    +  + +  N ++   ++L  +E  +
Sbjct: 41  LLDQIAELLRILGSADRLMEVIREELELVDEQFGDERRTEITANSADINLEDLITQEDVV 100

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKG 860
           +T+S +G+ K     ++    R GKG  A  + + + I  L      N +D I+  S +G
Sbjct: 101 VTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDHILCFSSRG 157

Query: 861 TL 862
            +
Sbjct: 158 RV 159


>gi|32453416|gb|AAP58320.1| DNA topoisomerase IV subunit A [Staphylococcus aureus]
          Length = 53

 Score =  106 bits (265), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 38/53 (71%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHF 141
           G++++Y A+ R++QDW LR +LIE  GN GS+D DPPAA RYTE +L   A  
Sbjct: 1   GDSSVYGAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEE 53


>gi|290578671|gb|ADD51232.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578673|gb|ADD51233.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578675|gb|ADD51234.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578677|gb|ADD51235.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
 gi|290578679|gb|ADD51236.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  106 bits (263), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/119 (52%), Positives = 93/119 (78%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
           TE+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  TELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|213025398|ref|ZP_03339845.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 98

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +++ N  G++V    V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE V
Sbjct: 1   MTERN--GSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENV 58

Query: 892 VSVERIRESEIVDEAESTE 910
           V ++R+ E    +E ++ +
Sbjct: 59  VGLQRVAEPVDDEELDAID 77



 Score = 46.7 bits (109), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
            ++        + I++ T  G  VR  +S I    GRN+ GV  I  A+ + V+ +  V 
Sbjct: 7   SVVGAVQVDDCDQIMMITDAGTLVRTRVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVA 65

Query: 743 HADADYDERICYMKHMSAQRRLI 765
               D +                
Sbjct: 66  EPVDDEELDAIDGSVTEGDEDTP 88


>gi|169787132|gb|ACA80005.1| GyrA [Erwinia amylovora]
          Length = 155

 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 72/154 (46%), Positives = 102/154 (66%)

Query: 445 GTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQE 504
           G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++E
Sbjct: 2   GLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIREE 61

Query: 505 LLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGK 564
           L  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y AQRRGGK
Sbjct: 62  LELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGK 121

Query: 565 GRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFV 598
           G+S   +++EDF+  L + +TH ++L FSS G +
Sbjct: 122 GKSAARIKEEDFIDRLLVANTHDTILCFSSRGRL 155



 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R       +    K  + +  N ++   ++L  +E  ++T+S 
Sbjct: 42  AELLRILASSERLMEVIREELELIRDQFGDKRRTEITANTADINIEDLINQEDVVVTLSH 101

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTL 862
           +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G L
Sbjct: 102 QGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRL 155


>gi|4996107|dbj|BAA78332.1| parC [Staphylococcus epidermidis]
          Length = 52

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 40/52 (76%)

Query: 65  VEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGN 116
             ++K + K A+  G+V+G+YHPHG++++YDA+ R++QDW LR +LIE  GN
Sbjct: 1   NTYDKNFRKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGN 52


>gi|294338122|emb|CBJ93960.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CP220]
          Length = 442

 Score =  104 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 90/478 (18%), Positives = 173/478 (36%), Gaps = 47/478 (9%)

Query: 20  SITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISG 79
           SI D   N    Y+    L R I    DGLK   R+I+   +   +       K + I  
Sbjct: 5   SIQDYFLNELTNYSCYSTL-RMIASSIDGLKNSSRKIINTALDKKLNTET---KVS-IFD 59

Query: 80  EVMGKY--HPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRL 135
            ++  Y  + HG  +    +  MA  +  S  + L+EG+GNFGS   + PAA RY   + 
Sbjct: 60  NMVQSYTQYLHG--SCAGVIQNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKN 117

Query: 136 QKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHN 194
           +K  + L  D+    V    N++GS  EPV      P +++NG   G+A G   NI   +
Sbjct: 118 KKYINDLF-DIKD--VLISQNFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRS 174

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
           L  V+     +     +DL   +   +G              +    ++        GV 
Sbjct: 175 LDSVIK---YIKTGKKVDLKPYIAGFKG-----------TVELVEDASSNNTQWNFIGVV 220

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIEL 314
            + K        ++TEIP  +     LE +  LV  K+I +  DL D+ +++ ++  +  
Sbjct: 221 EVNKNKA-----IITEIPPFIEYTKYLEILDNLVESKKIKNYKDLSDQRNQE-FKFEVIF 274

Query: 315 KRGASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTK 374
               S D  ++ L + +  ++    N +  N        +  I+  ++  R+  ++++  
Sbjct: 275 FDNISKDKAIDIL-KLSKRETEI-YNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKD 332

Query: 375 YLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLI 434
           + L    +                  V++I  S   E    +  ++              
Sbjct: 333 FDLKVLENDL-------NINVQKLRFVKLIIDS---ELQIMKRSKKDIELDLESKGFIKF 382

Query: 435 DDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
           +DS   +        +      +++               +   +    +    +IL+
Sbjct: 383 EDSYDYLLKLPIHSFTNETFEKLVQNAKEIKAKFETLKNLDTFKNYVESLDSIKNILT 440


>gi|46203585|ref|ZP_00051310.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II,
          topoisomerase IV), A subunit [Magnetospirillum
          magnetotacticum MS-1]
          Length = 66

 Score =  104 bits (259), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          +       I    + D +   YL YA++ I+ R++PD+RDGLKPVHRR+LF M Q+ ++ 
Sbjct: 2  TQPAVTGDIRDTPLADALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDP 61

Query: 68 NKKYV 72
          +  + 
Sbjct: 62 SGGFR 66


>gi|10281014|dbj|BAB13748.1| type II DNA topoisomerase [Issatchenkia orientalis]
          Length = 804

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  ++ + I++ +    + +++   + R+I  + DG KPV R+IL+   +  +      +
Sbjct: 651 DSTLSDIPISEFINKELILFSMADNV-RSIASVMDGFKPVQRKILYACYKRNLRDE---I 706

Query: 73  KCARISGEVMGK--YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K +++ G +     YH HG+A++  ++  +AQD+  S  + L+   G FGS    G   A
Sbjct: 707 KVSQLEGYIAEHTGYH-HGDASLMQSIIGLAQDFVGSNNINLLVPHGGFGSRAAGGKDAA 765

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           A RY    L      + + L    + +  + D    EP 
Sbjct: 766 AARYIFTELSAITRKIFNPLDNPLLTYVQD-DEQTVEPE 803


>gi|75763518|ref|ZP_00743229.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74488989|gb|EAO52494.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 67

 Score =  104 bits (258), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKY 71
          + +    + + D + + +  Y+  +I  RA+PD RDGLKPV RRIL+ M   G   +K +
Sbjct: 2  QAEKFHDLPLEDVLGDRFARYSKYIIQDRALPDARDGLKPVQRRILYSMYVEGNVHDKAF 61

Query: 72 VKCAR 76
           K A+
Sbjct: 62 RKSAK 66


>gi|294338321|emb|CBJ94360.1| Possible DNA topoisomerase (medium subunit) [Campylobacter phage
           CPt10]
          Length = 442

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 83/458 (18%), Positives = 166/458 (36%), Gaps = 46/458 (10%)

Query: 40  RAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKY--HPHGNAAIYDAL 97
           R I    DGLK   R+I+   +   +       K + I   ++  Y  + HG  +    +
Sbjct: 24  RMIASSIDGLKNSSRKIINTALDKKLNTET---KVS-IFDNMVQSYTQYLHG--SCSGVI 77

Query: 98  ARMAQDW--SLRLLLIEGQGNFGSVDGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
             MA  +  S  + L+EG+GNFGS   + PAA RY   + +K  + L  D+    V    
Sbjct: 78  QNMAASYTGSNNIPLLEGKGNFGSRFINEPAAPRYVYVKNKKYINDLF-DIKD--VLISQ 134

Query: 156 NYDGSFQEPVVLCARYPNVLVNGG-GGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           N++GS  EPV      P +++NG   G+A G   NI   +L  V+     +     +DL 
Sbjct: 135 NFEGSEIEPVFYVPSLPILVLNGSMNGLASGFKQNILPRSLDSVIK---YIKTGKKVDLK 191

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
             +   +G              +    ++        GV  + K        ++TEIP  
Sbjct: 192 PYIAGFKG-----------TVELVEDASSNNTQWNFIGVVEVNKNKA-----IITEIPPF 235

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           +     LE +  L+  K+I +  DL D+ +++ ++  +      S D  ++ L + +  +
Sbjct: 236 IEYTKYLEILDNLIESKKIKNYKDLSDQRNQE-FKFEVIFFDNISKDKAIDIL-KLSKRE 293

Query: 335 SLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAV 394
           +    N +  N        +  I+  ++  R+  ++++  + L    +            
Sbjct: 294 TEI-YNALDENNQVRTFENIESIIDYYIDVRKRFLIKQKDFDLKVLENDL-------NIN 345

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
                 V++I  S   E    +  ++              +DS   +        +    
Sbjct: 346 VQKLRFVKLIIDS---ELQIMKRSKKDIELDLESKGFIKFEDSYDYLLKLPIHSFTNETF 402

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
             +++               +   +    +    +IL+
Sbjct: 403 EKLVQNAKEIKAKFETLKNLDTFKNYVESLDSIKNILT 440


>gi|175941429|gb|ACB72669.1| GyrA [Streptomyces sp. Ht 020]
          Length = 179

 Score =  104 bits (258), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 79/205 (38%), Positives = 109/205 (53%), Gaps = 26/205 (12%)

Query: 365 REEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNA 424
           + EV+VRRTK+ L KA +RAH+L GL  A+  +DEV+ +IR S   E AR  LM      
Sbjct: 1   QIEVIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLM------ 54

Query: 425 SDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEI 484
                               G + + E+Q  AILE++L RL  L    I  E + L  +I
Sbjct: 55  --------------------GLLEIDELQANAILEMQLRRLAALEHQKITAEHDELQAKI 94

Query: 485 KECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH 544
            E  +IL+S ++   I+ +EL ++ D+    RR+ +V    DM  ED I  ED+VVT+S 
Sbjct: 95  NEYNEILASPAKQRTIVSEELAAIVDKFGDDRRSALVPFDGDMSIEDLIAEEDIVVTISR 154

Query: 545 LGYVKRVPLSVYRAQRRGGKGRSGV 569
            GYVKR     YR+Q RGGKG  G 
Sbjct: 155 SGYVKRTKTDDYRSQNRGGKGVRGT 179



 Score = 58.6 bits (140), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%)

Query: 741 VLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFI 800
           +     +Y+E +                  +       S++     +   ++L  +E  +
Sbjct: 90  LQAKINEYNEILASPAKQRTIVSEELAAIVDKFGDDRRSALVPFDGDMSIEDLIAEEDIV 149

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
           +T+S  G+ KRT + D+R  NR GKG+R 
Sbjct: 150 VTISRSGYVKRTKTDDYRSQNRGGKGVRG 178


>gi|290578701|gb|ADD51247.1| DNA gyrase A subunit [Lactobacillus sanfranciscensis]
          Length = 119

 Score =  103 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/119 (52%), Positives = 92/119 (77%)

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
           PD D++ LME + GPDFPTG +++G++ I++AY TGRG+IV+R  + IE+    ++ I V
Sbjct: 1   PDADVNDLMEALPGPDFPTGGIVMGKSEIRHAYETGRGNIVVRSKTDIEEDKNGKQTIAV 60

Query: 269 TEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQL 327
            E+PY VNKA ++E+IAELVR+KRI  I+ + DESDR+G R+ I+++R ASA+V+LN L
Sbjct: 61  AELPYMVNKATLIERIAELVRDKRINGISAINDESDREGMRIAIDIRRDASAEVVLNNL 119


>gi|228478508|gb|ACQ41840.1| gyrase subunit A [Burkholderia multivorans]
 gi|228478512|gb|ACQ41842.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score =  103 bits (256), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 37/42 (88%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
            ARI G+V+GKYHPHG++A+YD + RMAQD+SLR +LI+GQG
Sbjct: 3   SARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|227553417|ref|ZP_03983466.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
 gi|227177450|gb|EEI58422.1| possible DNA topoisomerase IV subunit A [Enterococcus faecalis
           HH22]
          Length = 261

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 110/315 (34%), Gaps = 64/315 (20%)

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
           +    V  LP    +  G+ +   +         +I+     +        VF TK G +
Sbjct: 1   MIYRPVHELPDLRWKEIGEHISQTI--LNLAIDESIIAVYPYKELSPTKTFVFITKAGMI 58

Query: 658 RRNKLSDFIQINR---SGKIAMKLDSR-DEILSVETCTQEN--DILLTTKLGQCVRFPIS 711
           ++ K++DF             MKL S  DEI +V     ++  D+ L +  G  +R+P+ 
Sbjct: 59  KQTKMADFEPWRTYKSRPTSCMKLKSDQDEITNVYLTNDQDLLDVFLVSNRGFGLRYPLY 118

Query: 712 AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEE 771
            +    G  + GV+ ++L + D V++  +V                              
Sbjct: 119 EV-PVVGSKAAGVKSMNLKEDDYVVNGLLVHSEGDTP----------------------- 154

Query: 772 ITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATD 831
                                       I+ V+++G  KR  + +     R+ +G+    
Sbjct: 155 ----------------------------IVIVTQRGGVKRMLAQELTQLGRAKRGLMVLR 186

Query: 832 VSKINEIGALVAVFPVNDND-QIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDER 890
             K N    +V  F     D  +++ + KGT   +      I+ R + G  +    KD +
Sbjct: 187 ELKKNPH-RVV--FMSESTDLDLLVTTQKGTQEVIQSKNYPISERTSNGSFVIDEQKDGQ 243

Query: 891 VVSVERIRESEIVDE 905
           V+ V  +  + I +E
Sbjct: 244 VMEVHEMHSAVIEEE 258


>gi|145629329|ref|ZP_01785128.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
 gi|144978832|gb|EDJ88555.1| DNA gyrase subunit A [Haemophilus influenzae 22.1-21]
          Length = 80

 Score =  102 bits (255), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%)

Query: 832 VSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           +S+ N  G +VA   V + DQI+L++D GTL+R  V+E+ I  R T+GV +  TA DE V
Sbjct: 1   MSERN--GKVVAATQVEETDQIMLITDAGTLVRTRVSEVSIVGRNTQGVRLIRTADDEHV 58

Query: 892 VSVERIRES 900
           VS+ER+ ++
Sbjct: 59  VSLERVCDA 67



 Score = 48.2 bits (113), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVL 742
           ++++     + + I+L T  G  VR  +S +    GRN+ GVR I  A  + V+S+  V 
Sbjct: 7   KVVAATQVEETDQIMLITDAGTLVRTRVSEV-SIVGRNTQGVRLIRTADDEHVVSLERVC 65

Query: 743 HA 744
            A
Sbjct: 66  DA 67


>gi|228478506|gb|ACQ41839.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQG
Sbjct: 3   SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 44


>gi|32813238|emb|CAE11801.1| topoisomerase II [Leishmania panamensis]
          Length = 345

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVM--GKYHPHGNAAIYDA 96
            R+IP   DG KP  R+ILF   +  +  +   +K  +++G V     YH HG  ++   
Sbjct: 249 ERSIPSAIDGFKPGQRKILFSCFKRNLVNS---IKVVQLAGYVSEHSAYH-HGEQSLVQT 304

Query: 97  LARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTEC 133
           +  MAQD+  S  + L+   G FG+    G   AA RY   
Sbjct: 305 IVGMAQDFVGSNNVPLLRKDGQFGTRLHGGKDHAAPRYIFT 345


>gi|228478516|gb|ACQ41844.1| gyrase subunit A [Burkholderia multivorans]
          Length = 43

 Score =  102 bits (254), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/42 (66%), Positives = 36/42 (85%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
            ARI G+V+GKYHPHG+ A+YD + RMAQD+SLR +LI+GQG
Sbjct: 2   SARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQG 43


>gi|1805621|dbj|BAA11412.1| GryA [Staphylococcus haemolyticus]
          Length = 40

 Score =  101 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 34/40 (85%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+VMGKYHPHG+++IYDA+ RMAQ +S R  L++GQ
Sbjct: 1   ARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQ 40


>gi|228478514|gb|ACQ41843.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
            ARI G+V+GKYHPHG+ A+Y  + RMAQD+SLR +LI+GQG
Sbjct: 3   SARIVGDVIGKYHPHGDTAVYGTIVRMAQDFSLRYMLIDGQG 44


>gi|224539990|ref|ZP_03680529.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
 gi|224518395|gb|EEF87500.1| hypothetical protein BACCELL_04902 [Bacteroides cellulosilyticus
          DSM 14838]
          Length = 53

 Score =  101 bits (251), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 42/50 (84%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
          E+  I  ++I +EM++SY+ Y+++VI+ RA+PD+RDG KPVHRRILFGMM
Sbjct: 3  EQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMM 52


>gi|10444202|gb|AAG17772.1| topoisomerase IV subunit C [Methylobacterium extorquens AM1]
 gi|10444204|gb|AAG17773.1| topoisomerase IV subunit C [Methylophilus methylotrophus]
 gi|10444206|gb|AAG17774.1| topoisomerase IV subunit C [Methylobacillus sp. SK1]
 gi|10444208|gb|AAG17775.1| topoisomerase IV subunit C [Methylovorus sp. SS1]
          Length = 40

 Score =  101 bits (250), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR  G+V+GKYHPHG++A Y+A+  MAQ +S R  L++GQ
Sbjct: 1   ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQ 40


>gi|170783860|gb|ACB37404.1| DNA gyrase subunit A [Spiroplasma eriocheiris]
 gi|170783863|gb|ACB37406.1| DNA gyrase subunit A [Spiroplasma sp. CRAYFISH]
 gi|170783866|gb|ACB37408.1| DNA gyrase subunit A [Spiroplasma sp. SHRIMP]
          Length = 68

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          S++++       ++ D M++ +  YA  +I  RA+PD+RDGLKPV RRILF M ++ + +
Sbjct: 2  SNQKQTDNELVYTLNDIMEDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 68 NKKYVKC 74
          N  Y K 
Sbjct: 62 NSSYKKS 68


>gi|315287143|ref|ZP_07872183.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
 gi|313630884|gb|EFR98580.1| DNA gyrase/topoisomerase IV, A subunit [Listeria ivanovii FSL
           F6-596]
          Length = 180

 Score =  100 bits (249), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 26/191 (13%)

Query: 330 YTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVG 389
            T+LQ+ F +NM+AL    P+   L  IL  ++  ++ V+ RRT++ L KA  RAH+L G
Sbjct: 1   MTALQTTFGINMLALVDNHPKVLNLKEILYYYLEHQKVVIRRRTEFELRKAEARAHILEG 60

Query: 390 LAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYL 449
           L IA+ N+D ++++IR S   + A+  LM +                            L
Sbjct: 61  LRIALDNIDAIIKLIRGSKTSDVAKEGLMTQ--------------------------FNL 94

Query: 450 SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVK 509
           S+ Q +AIL++RL RLTGL R+ I  E  +L   I +   IL+   R+L II++EL  +K
Sbjct: 95  SDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIK 154

Query: 510 DELDTPRRTRI 520
            +    RRT I
Sbjct: 155 VKYADKRRTEI 165


>gi|284052889|ref|ZP_06383099.1| DNA topoisomerase IV subunit A [Arthrospira platensis str. Paraca]
          Length = 350

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 129/391 (32%), Gaps = 99/391 (25%)

Query: 504 ELLSVKDELDTPRRTRIVEGLLDME-----------------------DEDCIVREDMVV 540
           EL S+K     PRRTRIV                                     E+ +V
Sbjct: 1   ELRSLKRRYSDPRRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETLV 60

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            ++  GYV+RV        +         +   +DF    ++ +T  +++  + +G  Y 
Sbjct: 61  EMTLRGYVRRVTPHNLSRPQS---REDITIEAIDDFPVTSYLTTTAETLVIINRMGKAYP 117

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTI---MPFPED------------------ 639
             V  +P  S ++RG  LI +LS +  +  +T    +                       
Sbjct: 118 LNVADIPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDADQ 177

Query: 640 --ESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDIL 697
              +  +   ++  +  G ++R   +DF+ ++  G   MKL   DE+         + ++
Sbjct: 178 RERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVV 237

Query: 698 LTTKLGQCVRFPIS-AIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           L T  G+ +R  I+       GR + G     L K +Q++    +               
Sbjct: 238 LATSGGRLLRLDINADQIPVMGRTAQGSVATRLRKNEQLVGCITLSSTG----------- 286

Query: 757 HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
                                                +L  +FIL VSE+G+ KR S   
Sbjct: 287 -------------------------------------ELNNKFILLVSEQGYFKRISLQS 309

Query: 817 FRISNRSGKGIRATDVSKINEIGA-LVAVFP 846
            + S R G G +       N+    LVA  P
Sbjct: 310 LQRSRRGGIGTQMLQFHSRNDACRGLVATTP 340



 Score = 81.4 bits (199), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 87/249 (34%), Gaps = 32/249 (12%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           +V  T  G VRR    +  +      I ++    D  ++    T    +++  ++G+   
Sbjct: 59  LVEMTLRGYVRRVTPHNLSRPQSREDITIEAI-DDFPVTSYLTTTAETLVIINRMGKAYP 117

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
             ++ I   +   S GV  I+L                             ++ R     
Sbjct: 118 LNVADIPSVS-LKSRGVPLITL---------------------LSPSATKDASTRPQDLI 155

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFR-ISNRSGKG 826
               + +    S V      ++ +     +  ++ +S +G  KR S  DF  +S R   G
Sbjct: 156 VAAFLGAGLQSSPVRPKTDADQRERAFSDQTDLIMLSAEGKIKRLSGTDFMDLSAR---G 212

Query: 827 IRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIR--VPVNEIRIASRATKGVVIFS 884
           I    +        L         DQ++L +  G L+R  +  ++I +  R  +G V   
Sbjct: 213 ITVMKLKD---NDELSYANLAATGDQVVLATSGGRLLRLDINADQIPVMGRTAQGSVATR 269

Query: 885 TAKDERVVS 893
             K+E++V 
Sbjct: 270 LRKNEQLVG 278


>gi|4768994|gb|AAD29710.1|AF140497_1 hypothetical protein [Oryza sativa]
          Length = 142

 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 620 NILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLD 679
            +LSL+ GERIT+I+P  E      + Y+V  T +G +++  L+ F  I  SG I+++L 
Sbjct: 1   QLLSLSDGERITSIVPVNEFG---EDQYLVMLTVNGYIKKVPLNAFSAIRTSGIISIQLA 57

Query: 680 SRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMA 739
             DE+  V  C  ++ + L ++ G  +    + +R   GR + GV  + L +GD++ SM 
Sbjct: 58  PGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRAL-GRKTRGVLAMKLKEGDKMASMD 116

Query: 740 IVLHADADYDERICYMKHMSA 760
           I+     +  E    ++ +S 
Sbjct: 117 IIPATSHNMPETYSRVRDLSP 137



 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIIL 855
           ++Q+++ ++  G+ K+     F        GI +  ++       L  V    D+D + L
Sbjct: 22  EDQYLVMLTVNGYIKKVPLNAFSAIR--TSGIISIQLAPG---DELKWVRRCGDDDLVAL 76

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
            S  G +I    N++R   R T+GV+     + +++ S++ I  +
Sbjct: 77  ASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPAT 121


>gi|229086163|ref|ZP_04218382.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
 gi|228697147|gb|EEL49913.1| Topoisomerase IV subunit A [Bacillus cereus Rock3-44]
          Length = 193

 Score =  100 bits (248), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 55/238 (23%)

Query: 656 NVRRNKLSDFIQINR-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            +++ +L+ +         +A+ L   DE++ +      +DI+L T     + F    + 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKDDEVVDIFVTDGTSDIVLATHGAYALIFGEEEVS 60

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R + GV+ I+L + D V S   +                                 
Sbjct: 61  PVGIRAA-GVKAINLKEDDYVASGKPLN-------------------------------- 87

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                K+Q IL V+++G  KR  + +   S R+ +G+      K
Sbjct: 88  -------------------GEKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELK 127

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            N    +V +  V D++ + + ++K  +  +     R   R + G ++        VV
Sbjct: 128 RNPY-RIVGIEIVRDDELVYMKTEKQIVEEIDPKMFRNKDRYSNGSLVLDVTDTGEVV 184



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             K+T    +++  R  +   A ++    +   +V +F  +    I+L +     +    
Sbjct: 1   MIKKTELNQYKVQ-RYSRAFVAVNLK---KDDEVVDIFVTDGTSDIVLATHGAYALIFGE 56

Query: 868 NEIRIASRATKGVVIFSTAKDERVVS 893
            E+        GV   +  +D+ V S
Sbjct: 57  EEVSPVGIRAAGVKAINLKEDDYVAS 82



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 826 GIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           G++A ++ +      + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF 
Sbjct: 68  GVKAINLKE---DDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFK 124

Query: 885 -TAKDE-RVVSVERIRESEIV 903
              ++  R+V +E +R+ E+V
Sbjct: 125 ELKRNPYRIVGIEIVRDDELV 145


>gi|33316585|gb|AAQ04611.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 147

 Score = 99.9 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 579 DLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPE 638
                      LFF++ G VY+ K + LP     ARG+ + N+L+    ERI  ++    
Sbjct: 2   HFVCHPRLD--LFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKS 59

Query: 639 DESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILL 698
            E   +  Y+V AT++G V+++KL+DF      G +A+ L   DE++    C+ E D+LL
Sbjct: 60  YE---DAPYLVLATQNGLVKKSKLTDFDSNRSGGIVAINLRGEDELVGAVLCSAEEDLLL 116

Query: 699 TTKLGQCVRFPISA--IRVFAGRNSVGVRG 726
            +  GQ +RF  +   +R   GR + GV+ 
Sbjct: 117 VSANGQSIRFSATDDALRPM-GRATSGVQA 145



 Score = 77.1 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 7/129 (5%)

Query: 754 YMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTS 813
           Y          +     +  +       E  I++    +      +++  ++ G  K++ 
Sbjct: 20  YRAKAYELPEALRTARGQHVANLLAFQTEERIAQVIQIKSYEDAPYLVLATQNGLVKKSK 79

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE--IR 871
             DF  SNRSG GI A ++        LV     +  + ++LVS  G  IR    +  +R
Sbjct: 80  LTDF-DSNRSG-GIVAINLR---GEDELVGAVLCSAEEDLLLVSANGQSIRFSATDDALR 134

Query: 872 IASRATKGV 880
              RAT GV
Sbjct: 135 PMGRATSGV 143


>gi|228478510|gb|ACQ41841.1| gyrase subunit A [Burkholderia cenocepacia]
          Length = 44

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/42 (69%), Positives = 37/42 (88%)

Query: 74  CARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
            ARI G+V+GKYHPHG+AA+YD + RMAQD+SLR +LI+GQG
Sbjct: 3   SARIVGDVIGKYHPHGDAAVYDRIVRMAQDFSLRYMLIDGQG 44


>gi|229025029|ref|ZP_04181458.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
 gi|228736364|gb|EEL86930.1| Topoisomerase IV subunit A [Bacillus cereus AH1272]
          Length = 193

 Score = 99.5 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 81/238 (34%), Gaps = 55/238 (23%)

Query: 656 NVRRNKLSDFIQINR-SGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIR 714
            +++ +L+ +         +A+ L   DE++ +      +DI+L T     + F    + 
Sbjct: 1   MIKKTELNQYKVQRYSRAFVAVNLKKEDEVVDIFATDGTSDIVLATHGAYALIFHEDEVS 60

Query: 715 VFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
               R + GV+ I+L + D V S   +                                 
Sbjct: 61  PVGVRAA-GVKAINLKEDDYVASGKPLN-------------------------------- 87

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                                K+Q IL  +++G  KR  + +   S R+ +G+      K
Sbjct: 88  -------------------GEKDQLILV-TQRGAVKRLKASEIEKSTRAKRGLVIFKELK 127

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            N    +V +  V D++ I + ++K  +  +     R   R + G ++        VV
Sbjct: 128 RNPY-RIVGIEIVRDDELIYMKTEKHIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 184



 Score = 50.9 bits (120), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 808 FGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPV 867
             K+T    +++  R  +   A ++    +   +V +F  +    I+L +     +    
Sbjct: 1   MIKKTELNQYKVQ-RYSRAFVAVNLK---KEDEVVDIFATDGTSDIVLATHGAYALIFHE 56

Query: 868 NEIRIASRATKGVVIFSTAKDERVVS 893
           +E+        GV   +  +D+ V S
Sbjct: 57  DEVSPVGVRAAGVKAINLKEDDYVAS 82



 Score = 46.3 bits (108), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 51/81 (62%), Gaps = 6/81 (7%)

Query: 826 GIRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           G++A ++ +      + +  P+N + DQ+ILV+ +G + R+  +EI  ++RA +G+VIF 
Sbjct: 68  GVKAINLKE---DDYVASGKPLNGEKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFK 124

Query: 885 -TAKDE-RVVSVERIRESEIV 903
              ++  R+V +E +R+ E++
Sbjct: 125 ELKRNPYRIVGIEIVRDDELI 145


>gi|69250183|ref|ZP_00605119.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
 gi|68193991|gb|EAN08551.1| DNA gyrase/topoisomerase IV, subunit A [Enterococcus faecium DO]
          Length = 202

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 32/229 (13%)

Query: 324 LNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARD 382
           +N L+  T L+  + +N+  +    +P    L+ IL  ++ FR + V RR  Y L K   
Sbjct: 1   MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 60

Query: 383 RAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIG 442
           R H+L GL +A  N+DEV+ IIR    P+ A                             
Sbjct: 61  RLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------------------- 91

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                 L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  ++K
Sbjct: 92  LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 151

Query: 503 QELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVK 549
           +EL +        RR+ + E      M + D +  E + + +S +G+V+
Sbjct: 152 KELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 200


>gi|116489836|gb|ABJ98821.1| GyrA [Enterobacter cloacae]
          Length = 40

 Score = 99.1 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 35/40 (87%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR+ G+V+GKYHPHG++A+YD + RMAQ +SLR +L++GQ
Sbjct: 1   ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQ 40


>gi|207109271|ref|ZP_03243433.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 58

 Score = 98.3 bits (243), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 29/52 (55%), Positives = 38/52 (73%)

Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           E K I  V I   ++ SYL Y+++VI+GRA+PD RDGLKPVHRRIL+ M +
Sbjct: 7  NETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58


>gi|1041429|emb|CAA60602.1| DNA gyrase [Mycobacterium aurum]
 gi|1041440|emb|CAA60606.1| DNA gyrase [Mycobacterium fortuitum]
 gi|1041616|emb|CAA60609.1| DNA gyrase [Mycobacterium peregrinum]
 gi|326535743|gb|ADZ76538.1| DNA gyrase A [Mycobacterium agri]
 gi|326535745|gb|ADZ76539.1| DNA gyrase A [Mycobacterium aichiense]
 gi|326535747|gb|ADZ76540.1| DNA gyrase A [Mycobacterium aurum]
 gi|326535751|gb|ADZ76542.1| DNA gyrase A [Mycobacterium chitae]
 gi|326535753|gb|ADZ76543.1| DNA gyrase A [Mycobacterium chubuense]
 gi|326535755|gb|ADZ76544.1| DNA gyrase A [Mycobacterium flavescens]
 gi|326535757|gb|ADZ76545.1| DNA gyrase A [Mycobacterium gadium]
 gi|326535759|gb|ADZ76546.1| DNA gyrase A [Mycobacterium neoaurum]
 gi|326535761|gb|ADZ76547.1| DNA gyrase A [Mycobacterium parafortuitum]
 gi|326535767|gb|ADZ76550.1| DNA gyrase A [Mycobacterium rhodesiae]
 gi|326535771|gb|ADZ76552.1| DNA gyrase A [Mycobacterium vaccae]
 gi|326535813|gb|ADZ76573.1| DNA gyrase A [Mycobacterium chelonae]
 gi|326535815|gb|ADZ76574.1| DNA gyrase A [Mycobacterium fortuitum]
          Length = 40

 Score = 97.6 bits (241), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|28193555|emb|CAD56010.1| DNA gyrase [Providencia stuartii]
          Length = 40

 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 35/40 (87%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+V+GKYHPHG++A+Y+ + R+AQ +S+R +L++GQ
Sbjct: 1   ARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQ 40


>gi|170783857|gb|ACB37402.1| DNA gyrase subunit A [Spiroplasma mirum]
          Length = 68

 Score = 97.6 bits (241), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 8  SDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEW 67
          S++++       ++ D M + +  YA  +I  RA+PD+RDGLKPV RRILF M ++ + +
Sbjct: 2  SNQKQTDNELVYTLNDIMDDRFARYAKYIIQERALPDVRDGLKPVQRRILFAMNELRLTF 61

Query: 68 NKKYVK 73
          N  Y K
Sbjct: 62 NSSYKK 67


>gi|1041427|emb|CAA60601.1| DNA gyrase [Mycobacterium abscessus]
 gi|1041431|emb|CAA60603.1| DNA gyrase [Mycobacterium avium]
 gi|1041434|emb|CAA60604.1| DNA gyrase [Mycobacterium bovis]
 gi|1041436|emb|CAA60605.1| DNA gyrase [Mycobacterium chelonae]
 gi|1041442|emb|CAA60607.1| DNA gyrase [Mycobacterium kansasii]
 gi|1041444|emb|CAA60608.1| DNA gyrase [Mycobacterium leprae]
 gi|2815371|emb|CAA76163.1| DNA gyrase [Mycobacterium fortuitum]
 gi|2815373|emb|CAA76162.1| DNA gyrase [Mycobacterium gastri]
 gi|2815375|emb|CAA76159.1| DNA gyrase [Mycobacterium intracellulare]
 gi|2815377|emb|CAA76161.1| DNA gyrase [Mycobacterium marinum]
 gi|2815379|emb|CAA76160.1| DNA gyrase [Mycobacterium ulcerans]
 gi|31559441|emb|CAD92759.1| DNA gyrase subunit A [Mycobacterium africanum]
 gi|31559443|emb|CAD92760.1| DNA gyrase subunit A [Mycobacterium smegmatis]
 gi|31559445|emb|CAD92761.1| DNA gyrase subunit A [Mycobacterium gordonae]
 gi|31559447|emb|CAD92762.1| DNA gyrase subunit A [Mycobacterium intracellulare]
 gi|31559449|emb|CAD92763.1| DNA gyrase subunit A [Mycobacterium leprae]
 gi|31559453|emb|CAD92765.1| DNA gyrase subunit A [Mycobacterium malmoense]
 gi|31559455|emb|CAD92766.1| DNA gyrase subunit A [Mycobacterium simiae]
 gi|31559497|emb|CAD92767.1| DNA gyrase subunit A [Mycobacterium szulgai]
 gi|31559499|emb|CAD92768.1| DNA gyrase subunit A [Mycobacterium tuberculosis H37Rv]
 gi|31559501|emb|CAD92769.1| DNA gyrase subunit A [Mycobacterium ulcerans]
 gi|294478221|gb|ADE87458.1| DNA gyrase A [Mycobacterium massiliense]
 gi|313759698|gb|ADR79161.1| DNA gyrase A [Mycobacterium bolletii]
 gi|326535749|gb|ADZ76541.1| DNA gyrase A [Mycobacterium [chelonae] ATCC 14472]
 gi|326535763|gb|ADZ76548.1| DNA gyrase A [Mycobacterium phlei]
 gi|326535765|gb|ADZ76549.1| DNA gyrase A [Mycobacterium porcinum]
 gi|326535769|gb|ADZ76551.1| DNA gyrase A [Mycobacterium smegmatis]
 gi|326535811|gb|ADZ76572.1| DNA gyrase A [Mycobacterium abscessus ATCC 19977]
 gi|326535817|gb|ADZ76575.1| DNA gyrase A [Mycobacterium massiliense]
 gi|328670897|gb|AEB26324.1| DNA gyrase A [Mycobacterium massiliense]
          Length = 40

 Score = 97.6 bits (241), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQ 40


>gi|110340818|gb|ABG67976.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824]
          Length = 40

 Score = 96.8 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 36/40 (90%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           ARI G+V+GKYHPHG+ A+YDAL RMAQD+S+RL L++GQ
Sbjct: 1   ARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQ 40


>gi|213025984|ref|ZP_03340431.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
          Typhi str. 404ty]
          Length = 39

 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 35/39 (89%)

Query: 26 QNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMG 64
          ++SYL YA++VI+GRA+PD+RDGLKPVHRR+L+ M  +G
Sbjct: 1  KSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLG 39


>gi|31559503|emb|CAD92770.1| DNA gyrase subunit A [Mycobacterium xenopi]
          Length = 40

 Score = 96.8 bits (239), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD L RMAQ WS+R  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQ 40


>gi|326535809|gb|ADZ76571.1| DNA gyrase A [Mycobacterium tuberculosis H37Rv]
          Length = 40

 Score = 96.4 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+A+IYD+L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQ 40


>gi|406489|gb|AAD12504.1| DNA gyrase B [Mycoplasma genitalium]
          Length = 77

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 40/53 (75%)

Query: 9  DEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMM 61
          +  +   + S+S+ +E++ S++ YA++VI+ RA+PD RDGLKPVHRR+L+G  
Sbjct: 13 ENLDNSTVKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAY 65


>gi|227496005|ref|ZP_03926316.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834493|gb|EEH66876.1| possible DNA topoisomerase (ATP-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 310

 Score = 96.0 bits (237), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 55/317 (17%), Positives = 90/317 (28%), Gaps = 54/317 (17%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            +  +   V +S  G V RV  +     R G + R   +             +  + V  
Sbjct: 7   TVPDDPCRVLLSATGLVARVAGAE-AVPRTGERQRHDALTSQ-------VPTTARSRVGV 58

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALI--NILSLNQGERITTIMPFPEDESSWNNLYVV 649
            +  G +   +V   P         +L     + L         +             VV
Sbjct: 59  VTDTGRLVVMEVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQREPVV 118

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            AT  G ++R K  D           + L   D ++        + + L T   Q +RF 
Sbjct: 119 LATAGGVIKRVKPGD-EPARGESWEVISLADGDRVVFAGIAADTDVLTLVTDDAQLLRFE 177

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
            S +R   GR + G+ GISL +G +VI+ A V          +       A   + S   
Sbjct: 178 ASKVRP-QGRGAAGMAGISLHEGARVIAGASVPAELLAEAVVVTIADAEGALPGMDS--- 233

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRA 829
                                                G  K T    +    R+  G+RA
Sbjct: 234 -------------------------------------GSVKVTPLDRYPAKGRATGGVRA 256

Query: 830 TDVSKINEIGALVAVFP 846
               +      LV  + 
Sbjct: 257 QRFLRGE--DQLVVAWV 271



 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 7/165 (4%)

Query: 740 IVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQF 799
           +V          +     +       S    +   L  D      +          +E  
Sbjct: 58  VVTDTGRLVVMEVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQREPV 117

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDK 859
           +L  +  G  KR    D            + +V  + +   +V      D D + LV+D 
Sbjct: 118 VL-ATAGGVIKRVKPGDEPARG------ESWEVISLADGDRVVFAGIAADTDVLTLVTDD 170

Query: 860 GTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             L+R   +++R   R   G+   S  +  RV++   +    + +
Sbjct: 171 AQLLRFEASKVRPQGRGAAGMAGISLHEGARVIAGASVPAELLAE 215



 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 89/278 (32%), Gaps = 38/278 (13%)

Query: 643 WNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            ++   V  +  G V R   ++ +      +        D + S    T  + + + T  
Sbjct: 9   PDDPCRVLLSATGLVARVAGAEAVPRTGERQR------HDALTSQVPTTARSRVGVVTDT 62

Query: 703 GQCVRFPI---SAIRVFAGRNS-VGVR----GISLAKGDQVISMAIVLHADADYDERICY 754
           G+ V   +     +    G  S  G +     + L  G+ V+ +  V  A  +       
Sbjct: 63  GRLVVMEVLSTPEVPRLEGAPSLAGGQPVGLLVDLEPGETVVGLVPVGEAQREPVVLATA 122

Query: 755 MKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILT-VSEKGFGKRTS 813
              +   +       +E    ++   +     +         +  +LT V++     R  
Sbjct: 123 GGVIKRVKPG-----DEPARGESWEVISLADGDRVVFAGIAADTDVLTLVTDDAQLLRFE 177

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDN--DQIILVS-----------DKG 860
           +   R   R   G+    + +      ++A   V      + ++V+           D G
Sbjct: 178 ASKVRPQGRGAAGMAGISLHEG---ARVIAGASVPAELLAEAVVVTIADAEGALPGMDSG 234

Query: 861 TLIRVPVNEIRIASRATKGVVIFS-TAKDERVVSVERI 897
           ++   P++      RAT GV        ++++V V  +
Sbjct: 235 SVKVTPLDRYPAKGRATGGVRAQRFLRGEDQLV-VAWV 271


>gi|3660560|dbj|BAA33440.1| This sequence corresponds to the amino acid positions 54 to 104 of
           E.coli parC gene [Enterococcus faecium]
          Length = 49

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 37/49 (75%)

Query: 67  WNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQG 115
           ++K + K A+  G +MG YHPHG+++IY+A+ RM+QDW LR +LIE  G
Sbjct: 1   YDKGFRKSAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHG 49


>gi|31559451|emb|CAD92764.1| DNA gyrase subunit A [Mycobacterium fortuitum]
          Length = 40

 Score = 95.2 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 25/40 (62%), Positives = 30/40 (75%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           AR   E MG YHPHG+++IYD L RMAQ WSLR  L++GQ
Sbjct: 1   ARSVAETMGNYHPHGDSSIYDPLVRMAQPWSLRYPLVDGQ 40


>gi|327342918|dbj|BAK09292.1| DNA gyrase subunit A [Streptococcus anginosus SK52]
          Length = 79

 Score = 94.9 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K
Sbjct: 1   KTANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDK 58

Query: 888 DERVVSVERIRESEIVDEAES 908
             ++V+   +      +E E 
Sbjct: 59  GAQIVTFTSVAADSEKEEDEE 79



 Score = 45.2 bits (105), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T  G  +R  ++ I    GR ++GV+ + L KG Q+++   V       ++
Sbjct: 19  NGDEDLMIITNTGVIIRTNVANI-SQTGRATLGVKVMRLDKGAQIVTFTSVAADSEKEED 77

Query: 751 RI 752
             
Sbjct: 78  EE 79


>gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5]
          Length = 455

 Score = 94.5 bits (233), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 117/311 (37%), Gaps = 27/311 (8%)

Query: 430 LIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLD 489
           +  + ++            L++ Q  AIL +RL  L  L   +IR E + L  E  E   
Sbjct: 15  IRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRKEFDELTKEKGEIEA 74

Query: 490 ILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDME---DEDCIVREDMVVT 541
           +L+S  +    +  E+  VK +         RRT+  +     E    +  I +E + V 
Sbjct: 75  LLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQQAMIEKEPITVV 134

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
           +S  G++        RA +      + +  ++ D +   F   T   +L  ++ G  +  
Sbjct: 135 ISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFTL 186

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
              +LP G  +  G+ L  ++ ++  + +             +   ++ +T  GN     
Sbjct: 187 GGDKLPGG--RGHGEPLRIMVDMDNDQAV-----LTAFVHDPSRKQLIVSTA-GNGFVVA 238

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNS 721
            ++ I   R GK  M +   +E   +   +  + + +  +  + + FP++ +        
Sbjct: 239 EAELIANTRKGKQIMNVALPEETQLLVPVSG-DHVAVVGENRKLLVFPLAQVPEMT--RG 295

Query: 722 VGVRGISLAKG 732
            GVR      G
Sbjct: 296 KGVRLQRYKDG 306


>gi|84500794|ref|ZP_00999029.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
 gi|84390861|gb|EAQ03279.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597]
          Length = 122

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 7/129 (5%)

Query: 713 IRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEI 772
           +RVF  R+SVGVRG+ L + D+V SM ++    A+ DER  Y+K   A          E 
Sbjct: 1   MRVFNSRSSVGVRGVRLNEKDEVASMFVLPTFPAESDERASYLKMRRAM-----AGDVEQ 55

Query: 773 TSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           T+ + + + +  + ++R  E+   E  ILT++  G G  +SS+D+ +  R G G+ A + 
Sbjct: 56  TTDEEEGNADMPLPQDRYAEMSAAETLILTITAGGAGHISSSHDYPLRGRGGMGVTAWE- 114

Query: 833 SKINEIGAL 841
            K    G +
Sbjct: 115 -KTMRTGEI 122


>gi|253568270|ref|ZP_04845681.1| DNA gyrase [Bacteroides sp. 1_1_6]
 gi|251842343|gb|EES70423.1| DNA gyrase [Bacteroides sp. 1_1_6]
          Length = 113

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 48/82 (58%), Gaps = 3/82 (3%)

Query: 830 TDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK-D 888
            ++++  + G LV +  V D + +++++  G  IR+ V ++RI  RAT+GV + +  K +
Sbjct: 1   MNITE--KTGKLVTIKSVTDENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRN 58

Query: 889 ERVVSVERIRESEIVDEAESTE 910
           +++ SV ++    + DE  + E
Sbjct: 59  DQIGSVCKVMTESLEDEVPAEE 80



 Score = 47.1 bits (110), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 683 EILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAK-GDQVISMAIV 741
           +++++++ T END+++  K G  +R  ++ +R+  GR + GVR I+L K  DQ+ S+  V
Sbjct: 9   KLVTIKSVTDENDLMIINKSGITIRLKVADVRIM-GRATQGVRLINLEKRNDQIGSVCKV 67

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           +    + +      +           D +   +  +
Sbjct: 68  MTESLEDEVPAEEAEGTIVSDLTTDQDVDNADTATD 103



 Score = 38.6 bits (88), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINE-IGALVAVFPVNDNDQI 853
            E  ++ +++ G   R    D RI  R+ +G+R  ++ K N+ IG++  V   +  D++
Sbjct: 18  DENDLMIINKSGITIRLKVADVRIMGRATQGVRLINLEKRNDQIGSVCKVMTESLEDEV 76


>gi|289803041|ref|ZP_06533670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 92

 Score = 94.1 bits (232), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 45/66 (68%)

Query: 845 FPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVD 904
             V+D DQI++++D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +
Sbjct: 1   VQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDE 60

Query: 905 EAESTE 910
           E ++ +
Sbjct: 61  ELDAID 66



 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + I++ T  G  VR  +S I    GRN+ GV  I  A+ + V+ +  V     D + 
Sbjct: 4   DDCDQIMMITDAGTLVRTRVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 62

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                        +      +     +   
Sbjct: 63  DAIDGSVTEGDEDIAPEAESDDDVADDADE 92


>gi|327342921|dbj|BAK09294.1| DNA gyrase subunit A [Streptococcus anginosus]
          Length = 78

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 829 ATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKD 888
             ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K 
Sbjct: 1   TANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDKG 58

Query: 889 ERVVSVERIRESEIVDEAES 908
            ++V+   +      +E E 
Sbjct: 59  AQIVTFTSVAADSEKEEDEE 78



 Score = 45.2 bits (105), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T  G  +R  ++ I    GR ++GV+ + L KG Q+++   V       ++
Sbjct: 18  NGDEDLMIITNTGVIIRTNVANI-SQTGRATLGVKVMRLDKGAQIVTFTSVAADSEKEED 76

Query: 751 RI 752
             
Sbjct: 77  EE 78


>gi|260941163|ref|XP_002614748.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
 gi|238851934|gb|EEQ41398.1| hypothetical protein CLUG_05526 [Clavispora lusitaniae ATCC 42720]
          Length = 134

 Score = 94.1 bits (232), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 13/124 (10%)

Query: 105 SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNY---DG 159
           S  L L++  G FG+    G   +A RY   +L +    + + L     D   NY   D 
Sbjct: 5   SNNLNLLKPNGGFGTRAAGGKDFSAPRYIFTQLNEITRKVFNPLD----DPLYNYLQDDE 60

Query: 160 SFQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALME 218
           S  EP   L    P +LVNG  GI  G +TNIP+ N  ++V     +++  D++   +  
Sbjct: 61  STVEPEWYLPV-IPMLLVNGAEGIGTGWSTNIPSFNPADIVANIRRLMEGGDLE--EMYP 117

Query: 219 IIRG 222
             RG
Sbjct: 118 WFRG 121


>gi|327342909|dbj|BAK09286.1| DNA gyrase subunit A [Streptococcus intermedius]
          Length = 79

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K
Sbjct: 1   KTANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDK 58

Query: 888 DERVVSVERIRESEIVDEAES 908
             ++V+   +      +E E 
Sbjct: 59  GAQIVTFTSVTADNEKEEDED 79



 Score = 45.2 bits (105), Expect = 0.058,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T  G  +R  ++ I    GR ++GV+ + L KG Q+++   V   +   ++
Sbjct: 19  NGDEDLMIITNTGVIIRTNVANI-SQTGRATLGVKVMRLDKGAQIVTFTSVTADNEKEED 77

Query: 751 R 751
            
Sbjct: 78  E 78


>gi|226327146|ref|ZP_03802664.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
 gi|225204364|gb|EEG86718.1| hypothetical protein PROPEN_01011 [Proteus penneri ATCC 35198]
          Length = 91

 Score = 93.7 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNK 69
          E    G+    +    +N+YL Y++ VI+ RA+P + DGLKPV RRI++ M ++G+    
Sbjct: 3  ELTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTA 62

Query: 70 KYV 72
          K+ 
Sbjct: 63 KFK 65


>gi|47420010|gb|AAT27357.1| DNA gyrase A [Campylobacter lari]
          Length = 157

 Score = 93.3 bits (230), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/179 (37%), Positives = 105/179 (58%), Gaps = 26/179 (14%)

Query: 319 SADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLN 378
            ++++LN L++ T+++S + V M+A++  +P+ F+   +L  F+  R+ V++RRT Y L 
Sbjct: 2   MSEIVLNNLFKSTTMESTWGVIMLAIHNKEPKVFSFFELLNLFLNHRKTVIIRRTIYELQ 61

Query: 379 KARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSS 438
           KAR RAH+L GL IA+ N+DEV+ +I+ SP+  TA+  LMQ+                  
Sbjct: 62  KARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQK------------------ 103

Query: 439 YTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRL 497
                     LSE+Q+ AIL+++L RLTGL R+ I NEL  L  EI+    IL S + L
Sbjct: 104 --------FGLSELQSNAILDMKLGRLTGLEREKIDNELRELLAEIERLDQILKSETLL 154


>gi|224532517|ref|ZP_03673142.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
 gi|224512589|gb|EEF82965.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23]
          Length = 118

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
            +  ++L VSE G+GKR +        R   G  +   S   + G++V    V+++D+I+
Sbjct: 16  KENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDK-KAGSVVDAIAVSEDDEIL 74

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVER 896
           LVS +   +R    ++    +  +G+ +     ++ +VSV +
Sbjct: 75  LVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSK 115


>gi|269219417|ref|ZP_06163271.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211152|gb|EEZ77492.1| putative DNA gyrase subunit A [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 241

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/254 (16%), Positives = 74/254 (29%), Gaps = 46/254 (18%)

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
             +S G   +  V  +P+        A   +  L         +   +   +      V 
Sbjct: 2   VVTSAGRAVRLDVLDVPVAPDAPSLAAGARLRELVSLAEGERAVGLIDLSEAAAPP--VL 59

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
           AT+ G ++R       +        + L+  D ++    C   + I+L +     +RF  
Sbjct: 60  ATERGKIKRVGAGHPGK---DSWELIGLEKGDSVIGCGHCADADQIVLVSSDAHLLRFDG 116

Query: 711 SAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTE 770
           S++R   GR   GV GI L    +VI++ +V   D              A    ++    
Sbjct: 117 SSVRP-QGRAGRGVAGIRLGAEAKVIALGVVPGDDVGGTLVATVSGSRDALEGTVA---- 171

Query: 771 EITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                               G  K T    F    R   G+RA 
Sbjct: 172 ------------------------------------GNAKVTPLDRFPAKGRGTGGVRAQ 195

Query: 831 DVSKINEIGALVAV 844
              +  +   L AV
Sbjct: 196 RFLRGEDCLQLAAV 209



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 9/122 (7%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            EG  +       +     +L  +E+G  KR              G  + ++  + +  +
Sbjct: 39  AEGERAVGLIDLSEAAAPPVL-ATERGKIKRV--------GAGHPGKDSWELIGLEKGDS 89

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRES 900
           ++      D DQI+LVS    L+R   + +R   RA +GV       + +V+++  +   
Sbjct: 90  VIGCGHCADADQIVLVSSDAHLLRFDGSSVRPQGRAGRGVAGIRLGAEAKVIALGVVPGD 149

Query: 901 EI 902
           ++
Sbjct: 150 DV 151



 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 74/218 (33%), Gaps = 31/218 (14%)

Query: 698 LTTKLGQCVRFPISAIR--VFAGRNSVGVRG---ISLAKGDQVISMAIVLHADADYDERI 752
           + T  G+ VR  +  +     A   + G R    +SLA+G++ + +  +  A A      
Sbjct: 2   VVTSAGRAVRLDVLDVPVAPDAPSLAAGARLRELVSLAEGERAVGLIDLSEAAAPPVLAT 61

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRT 812
              K           D+ E+  L+   SV G      C      +Q +L  S+     R 
Sbjct: 62  ERGKIKRVGAGHPGKDSWELIGLEKGDSVIG------CGHCADADQIVLVSSDAHLL-RF 114

Query: 813 SSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND-------------QIILVSDK 859
                R   R+G+G+    +        ++A+  V  +D               +  +  
Sbjct: 115 DGSSVRPQGRAGRGVAGIRLGA---EAKVIALGVVPGDDVGGTLVATVSGSRDALEGTVA 171

Query: 860 GTLIRVPVNEIRIASRATKGVVIFS-TAKDE--RVVSV 894
           G     P++      R T GV        ++  ++ +V
Sbjct: 172 GNAKVTPLDRFPAKGRGTGGVRAQRFLRGEDCLQLAAV 209


>gi|49425337|gb|AAT66029.1| DNA topoisomerase IV subunit A [Corynebacterium amycolatum]
          Length = 47

 Score = 92.9 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 89  GNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPPAAERYTECRLQ 136
           G+ ++Y+A+ R++QDW LR +LIE  GN GS+D D PAA RYTE +L 
Sbjct: 1   GDFSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDND-PAAMRYTEAKLS 47


>gi|71902126|ref|ZP_00684158.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71728115|gb|EAO30314.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 352

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/321 (21%), Positives = 120/321 (37%), Gaps = 26/321 (8%)

Query: 432 DLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDIL 491
            + ++            LS+ QT  IL+ +L +L  L    IR+E ++L  E  E   IL
Sbjct: 4   IIRNEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEINVIL 63

Query: 492 SSRSRLLGIIKQELLSVKDELDTPRRTRIVEGL--LDMEDEDCIVREDMVVTVSHLGYVK 549
            S  +L  +IK ELL+        RR  +V       +++ + +  E M V +S  G++ 
Sbjct: 64  DSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWI- 122

Query: 550 RVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIG 609
                  RA +      SG+  R+ D +       +   V F  S G  Y   V  LP  
Sbjct: 123 -------RAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSA 175

Query: 610 SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
                     N   L           F    S+ N+   V A+ HG     +  +    N
Sbjct: 176 RG--------NGEPLTGRFSPAPGASFQAMASADNDKLFVLASSHGYGFITRFENLTGRN 227

Query: 670 RSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGI 727
           ++GK  + L    +++ +   T    + I+  T  G  +    S +         G + I
Sbjct: 228 KAGKAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELD--KGKGNKLI 285

Query: 728 SLAK----GDQVISMAIVLHA 744
            + K     ++++++  V  +
Sbjct: 286 DIPKTKLATERLVAVIAVASS 306



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 18/192 (9%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S  +GD++++ A+   +           +  S     +         
Sbjct: 123 RAAKGHDVDPSGMSYREGDRLLA-AVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEP 181

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     S +        + F+L  S  G+G  T      ++ R+  G     ++ 
Sbjct: 182 LTGRFSPAPGASFQAMASADNDKLFVL-ASSHGYGFITRFE--NLTGRNKAGKAMIHLTP 238

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----D 888
                 ++ + P+ D  +D+I+ V+  G L+ +  +E+    +  KG  +    K     
Sbjct: 239 G---AQVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDK-GKGNKLIDIPKTKLAT 294

Query: 889 ERVVSVERIRES 900
           ER+V+V  +  S
Sbjct: 295 ERLVAVIAVASS 306


>gi|37542701|gb|AAM13689.1| DNA gyrase [Mycobacterium celatum]
          Length = 147

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 581 FIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
           F+ STH  +            +    P            N  +    ERI  ++     E
Sbjct: 1   FVCSTHDWICSSPPRAGCTAPRRTTCPRRRGPRAASMWANWWAFKPEERIAQVIQIRSYE 60

Query: 641 SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +  Y+V AT++G V++ KL+DF      G +A+ L   DE++    C+ ++D+LL +
Sbjct: 61  ---DAPYLVLATRNGLVKKTKLTDFDSNRSGGIVAINLRDGDELVGAVLCSADDDLLLVS 117

Query: 701 KLGQCVRFPISA--IRVFAGRNSVGVRGIS 728
             GQ +RF  +   +R   GR + GV+G+ 
Sbjct: 118 ANGQSIRFSATDEALRPM-GRATSGVQGMR 146



 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 781 VEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGA 840
            E  I++           +++  +  G  K+T   DF  SNRSG GI A ++        
Sbjct: 46  PEERIAQVIQIRSYEDAPYLVLATRNGLVKKTKLTDF-DSNRSG-GIVAINLRDG---DE 100

Query: 841 LVAVFPVNDNDQIILVSDKGTLIRVPVNE--IRIASRATKGVVIFST 885
           LV     + +D ++LVS  G  IR    +  +R   RAT GV     
Sbjct: 101 LVGAVLCSADDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRV 147


>gi|46203155|ref|ZP_00051974.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Magnetospirillum magnetotacticum MS-1]
          Length = 363

 Score = 92.5 bits (228), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 68/257 (26%), Positives = 113/257 (43%), Gaps = 35/257 (13%)

Query: 275 VNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQ 334
           + KA ++EK+A+L++EK++  +AD+RDES      V+    R     +++  L+R + L+
Sbjct: 1   MPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLEPRSRSVDPVMLMESLFRLSELE 60

Query: 335 SLFSVNMVALNGYK-PERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIA 393
           +   +N+  L G   P    L   L+ +V  R  V+ RR+ Y L +   R  +L GL I 
Sbjct: 61  ARVPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIV 120

Query: 394 VANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQ 453
             +LDEV+RIIR    P+ A                                   L++VQ
Sbjct: 121 YLDLDEVIRIIREEDEPKAA-----------------------------LMARFELTDVQ 151

Query: 454 TRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELD 513
             AIL+ RL  L  L   +++ E + L  E +   ++L S       I +++ +VK    
Sbjct: 152 ANAILDTRLRSLRKLEEMELKREFDELTKEKQGIEELLGSEKLQWADITKQIRAVKKTFG 211

Query: 514 T-----PRRTRIVEGLL 525
                  RRT +     
Sbjct: 212 PETKLGKRRTTLENPPD 228


>gi|255018820|ref|ZP_05290946.1| DNA gyrase subunit A [Listeria monocytogenes FSL F2-515]
          Length = 80

 Score = 92.2 bits (227), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 821 NRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGV 880
           NR G G++   +++ N  G LVA+  V   + ++L++  G LIR  ++ +    R+  GV
Sbjct: 1   NRGGMGVKTVTITEKN--GNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGV 58

Query: 881 VIFSTAKD 888
            +    +D
Sbjct: 59  KLIRLDED 66



 Score = 45.9 bits (107), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 684 ILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           +++++T T E D++L T  G  +RF I  +    GR+++GV+ I L + 
Sbjct: 19  LVAMKTVTGEEDLMLMTVSGVLIRFEIDTV-SQTGRSAMGVKLIRLDED 66


>gi|270719656|ref|ZP_06223336.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
 gi|270315398|gb|EFA27669.1| DNA gyrase, A subunit [Haemophilus influenzae HK1212]
          Length = 181

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 5/180 (2%)

Query: 404 IRFSPNPETARRELMQRSWNASDIKDLI----DLIDDSSYTIGSDGT-MYLSEVQTRAIL 458
           IR S N E A   +  RSW   +    +       D+    +G  G   YLS  Q  AIL
Sbjct: 1   IRNSKNREEAATAISSRSWTLHNDIINLLDVSARPDELEENLGIQGEQYYLSPAQVNAIL 60

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRT 518
           ELRL RLTG+  +++  E   L ++I + L ILSS  RL+ +I++EL  VK +    R T
Sbjct: 61  ELRLHRLTGIAFEEVIKEYEELLVKIADLLHILSSAERLMEVIREELEEVKAQFGDDRLT 120

Query: 519 RIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVT 578
            I     D++ ED I +ED+VVT+SH GYVK  PL+ Y AQRRGGKG+S   M++EDF+ 
Sbjct: 121 EITAASGDIDLEDLIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIE 180



 Score = 47.5 bits (111), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 36/91 (39%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           AD    +   + +    R    + +        + +     +   ++L  +E  ++T+S 
Sbjct: 87  ADLLHILSSAERLMEVIREELEEVKAQFGDDRLTEITAASGDIDLEDLIAQEDVVVTLSH 146

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKIN 836
           +G+ K     D+    R GKG  AT + + +
Sbjct: 147 EGYVKYQPLTDYEAQRRGGKGKSATKMKEED 177


>gi|321472296|gb|EFX83266.1| hypothetical protein DAPPUDRAFT_315718 [Daphnia pulex]
          Length = 711

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 82/463 (17%), Positives = 163/463 (35%), Gaps = 73/463 (15%)

Query: 44  DLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAI--YD------ 95
            + DGL    R+I+F  ++     +K+ V  A+++G V  +       ++  YD      
Sbjct: 261 SIMDGLTVGQRKIIFTCIK---RTDKEEVTVAQLAGLVAAR------TSLCNYDEENLTR 311

Query: 96  ALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTV 151
            +  +A D+  +  + L++  G+FG+    G+  A+ R     + +    +         
Sbjct: 312 TIIGLAHDFVGTNNINLLQPIGHFGTRLQGGEDAASPRQISTLMSQLTRIIFHPHD---- 367

Query: 152 DFRPNY--DG-SFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDN 208
           D+   +  DG    EP       P +LVNG GGI     T+   +N  ++++  + +++ 
Sbjct: 368 DWLLKHRTDGKRLIEPEFYAPIIPMILVNGIGGIGTDWTTSRLIYNPRDIIENIMRMLNG 427

Query: 209 PDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVV 268
            +                    I G  G          + VI G    E +     Q+V+
Sbjct: 428 EEPIYMNPW-------------IKGYQGSIQRVDD--NTYVISG----EVSKLSATQVVI 468

Query: 269 TEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVI-- 323
           TE+P  ++     E + E +    EK    I   ++       R V+ +           
Sbjct: 469 TELPLGISVRNYRESVMENLLHGSEKIPPLITGYKEYHTDTTVRFVVNMTEEKMQQAESQ 528

Query: 324 -LNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR---TKYLLNK 379
             + L+R     ++    +   NG+     +   ILK +   R  +   R       L  
Sbjct: 529 GFHDLFRLQCTHTVTPTLLYDPNGFLKNYDSNNDILKTYFDVRLNLFEERKKLLTGELQA 588

Query: 380 ARDRAHVLVGLAIA------------VANLDEVVRIIRFSPNPETARRELMQRSWNASDI 427
           +  +    +    A            +  L E +R + F P+P  AR +    +    D 
Sbjct: 589 SCKKLTNEIRYVHAIWNGDLIVNRKKINVLVEELRRLNFDPDPLRARMKNQNDNVKTED- 647

Query: 428 KDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGR 470
               ++ DD    +    T  L+      +L+ +  ++  L  
Sbjct: 648 ----EVGDDDFSYLLMMNTRSLTLEGLNELLQNQKFKMKALEI 686


>gi|327342912|dbj|BAK09288.1| DNA gyrase subunit A [Streptococcus constellatus subsp.
           constellatus]
          Length = 78

 Score = 91.0 bits (224), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K
Sbjct: 1   KTANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTGRATLGVKVMRLDK 58

Query: 888 DERVVSVERIRESEIVDEAE 907
             ++V+   +      +  E
Sbjct: 59  GAQIVTFTSVEAENEKEVDE 78



 Score = 44.8 bits (104), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T  G  +R  ++ I    GR ++GV+ + L KG Q+++   V   +    +
Sbjct: 19  NGDEDLMIITNTGVIIRTNVANI-SQTGRATLGVKVMRLDKGAQIVTFTSVEAENEKEVD 77

Query: 751 R 751
            
Sbjct: 78  E 78


>gi|32481438|gb|AAP84065.1| gyrase [Enterococcus casseliflavus]
          Length = 39

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 57 LFGMMQMGVEWNKKYVKCARISGEVMGKYHPHGNAAIYD 95
          L+GM ++GV  +K + K ARI G+VMGKYHPHG++AIY+
Sbjct: 1  LYGMNELGVTPDKPHKKSARIVGDVMGKYHPHGDSAIYE 39


>gi|226327144|ref|ZP_03802662.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
 gi|225204362|gb|EEG86716.1| hypothetical protein PROPEN_01009 [Proteus penneri ATCC 35198]
          Length = 270

 Score = 90.6 bits (223), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 77/252 (30%), Positives = 122/252 (48%), Gaps = 32/252 (12%)

Query: 267 VVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQG-YRVVIELKRGA-SADVIL 324
           ++T +P+QV+ A +LE+IA L+R K++  + DLRDESD +   R+VI  +      + ++
Sbjct: 1   MITALPHQVSGAKVLEQIAALMRAKKLPLVEDLRDESDHENPTRLVIVPRSNRVDLEQVM 60

Query: 325 NQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDR 383
             L+  T L+  + VN+  +    +P    L+ IL  ++ +R + V  R  + L K   R
Sbjct: 61  YYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVYRRQTVTNRLNHRLEKVLRR 120

Query: 384 AHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGS 443
             +L GL IA  N+DEV+ IIR    P   + ELM+R                       
Sbjct: 121 LEILKGLLIAYLNIDEVIEIIRHEDEP---KAELMRR----------------------- 154

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
                LS++Q  AILELRL  L  L    ++ E + L  E      +LSS  RL  ++K+
Sbjct: 155 ---FELSDIQAEAILELRLRHLAKLEEIKLKAESDELEKERDSIEKLLSSPRRLNTLLKK 211

Query: 504 ELLSVKDELDTP 515
           +L   +  L   
Sbjct: 212 KLKPTQKNLVMT 223


>gi|299741517|ref|XP_001834519.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
 gi|298404747|gb|EAU87295.2| DNA topoisomerase II [Coprinopsis cinerea okayama7#130]
          Length = 966

 Score = 90.2 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 57/236 (24%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYV 72
           +  +  +  ++ +    + +++   + R+IP +  GLKP  R++++G  +  +   KK +
Sbjct: 697 DHRLEEIPYSEFINKELILFSMANNV-RSIPSIAYGLKPGQRKVIWGCFKRKL---KKEI 752

Query: 73  KC---ARISGEVMGK---YHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSVDGDP 124
           K    AR S   + +   YH HG A++   +  +AQD+  S  L L+       S+D D 
Sbjct: 753 KVEIFARSSNGYISEHAAYH-HGEASLAATIINLAQDFVGSNNLALLSP-----SLDDDV 806

Query: 125 PAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAV 184
           P                                     EP       P VL+NG  GI  
Sbjct: 807 P------------------------------------IEPEWHMPTVPMVLINGAEGIGT 830

Query: 185 G--MATNIPTHNLGEVVDGCVAVIDNPDIDLDAL-MEIIRGPDFPTGAVILGRTGI 237
           G  + TNIP +N  ++V      +   +++         +G   P G       G+
Sbjct: 831 GSRLDTNIPPYNPIDIVANIRRKMKGEELEPMTPWWRGFKGEVRPPGKGKYDVVGV 886


>gi|242032529|ref|XP_002463659.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
 gi|241917513|gb|EER90657.1| hypothetical protein SORBIDRAFT_01g003760 [Sorghum bicolor]
          Length = 188

 Score = 89.5 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFG 809
            R        ++    S       S+ +  +   + S    +   L   ++L V+E G G
Sbjct: 26  TRSPPSHSTRSRPPSASSSPASSPSMPSPRAPRLSPSSPAPRVRDLSPPWLLFVAENGIG 85

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPV--------NDNDQIILVSDKGT 861
           KR     FR+ N +  G++   + +      L AVF            ++Q++LVS  GT
Sbjct: 86  KRVPLNAFRLLNFNAVGLQGYKLPEDCR---LAAVFIAGLSLTEDGESDEQVVLVSQSGT 142

Query: 862 LIRVPVNEIRIASRATKGVVIFSTAKDERV 891
           + R+ V +I I SR ++GV++       ++
Sbjct: 143 VNRIKVKDISIQSRHSRGVILMRLEHAGKI 172



 Score = 42.5 bits (98), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFI--QINRSGKIAMKLDSRDEILSVETC--------TQE 693
           +  +++F  ++G  +R  L+ F     N  G    KL     + +V             +
Sbjct: 72  SPPWLLFVAENGIGKRVPLNAFRLLNFNAVGLQGYKLPEDCRLAAVFIAGLSLTEDGESD 131

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA 730
             ++L ++ G   R  +  I     R+S GV  + L 
Sbjct: 132 EQVVLVSQSGTVNRIKVKDI-SIQSRHSRGVILMRLE 167


>gi|541460|pir||S41421 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium smegmatis (fragment)
 gi|629195|pir||S43042 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A -
           Mycobacterium avium (fragment)
 gi|452278|emb|CAA54443.1| DNA gyrase subunit A [Mycobacterium smegmatis]
          Length = 36

 Score = 88.7 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|229891675|sp|P0C9C1|TOP2_ASFWA RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 169/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGVKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  +
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKN 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+ VI         S  R 
Sbjct: 880  NPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVI---------SEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK  +   ++ 
Sbjct: 931  IITITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIME 988

Query: 325  NQLYRYTSLQSLF------------SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               ++ T  Q                +N V   G   E  T   IL A++ +R E+  +R
Sbjct: 989  E--FKCTEEQDSIENFLRLRNCLHSHLNFVKPKGGIIEFNTYYEILYAWLPYRRELYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + R  +   +   +    E+   +    + + A R L +  +   +   +I 
Sbjct: 1047 LMREHAVLKLRIIMETAIVRYINESAELN--LSHYEDEKEASRILSEHGFPPLNQTLIIS 1104

Query: 433  LIDDSSYTIGSDG-----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                S   +         T  LS      ++  +  R+  + +   R +    
Sbjct: 1105 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1157


>gi|229891674|sp|P0C9C0|TOP2_ASFP4 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 88.3 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 90/473 (19%), Positives = 169/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGVKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  +
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKN 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+ VI         S  R 
Sbjct: 880  NPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVI---------SEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK  +   ++ 
Sbjct: 931  IITITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIME 988

Query: 325  NQLYRYTSLQSLF------------SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               ++ T  Q                +N V   G   E  T   IL A++ +R E+  +R
Sbjct: 989  E--FKCTEEQDSIENFLRLRNCLHSHLNFVKPKGGIIEFNTYYEILYAWLPYRRELYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + R  +   +   +    E+   +    + + A R L +  +   +   +I 
Sbjct: 1047 LMREHAVLKLRIIMETAIVRYINESAELN--LSHYEDEKEASRILSEHGFPPLNQTLIIS 1104

Query: 433  LIDDSSYTIGSDG-----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                S   +         T  LS      ++  +  R+  + +   R +    
Sbjct: 1105 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1157


>gi|133853668|gb|ABO39038.1| GyrA [Brucella abortus]
          Length = 37

 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+ +IYDAL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDVSIYDALVRMAQDFSMRDPLI 37


>gi|145308241|gb|ABP57384.1| ParC [Brucella abortus]
          Length = 260

 Score = 88.3 bits (217), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 71/287 (24%), Positives = 117/287 (40%), Gaps = 46/287 (16%)

Query: 339 VNMVALNGYKPERF-TLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANL 397
           +NM  L+  K     +L  +L+ ++  R+EV+VRR+++ L +   R  +L G  IA  NL
Sbjct: 1   LNMNVLSHGKVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNL 60

Query: 398 DEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAI 457
           DEV+RIIR    P+                                     L++VQ  +I
Sbjct: 61  DEVIRIIREEDEPKQ-----------------------------ELMRVFELTDVQAESI 91

Query: 458 LELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT--- 514
           L +RL  L  L   +IR E + L  E  +   +L+S +R    I  E+ +V+++      
Sbjct: 92  LNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQWKKISTEIKAVREKFGPTTR 151

Query: 515 --PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGV 569
              RRT         L+   +  I RE + + VS  G++        RA +      S +
Sbjct: 152 LGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTL 203

Query: 570 VMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGK 616
             ++ D +   F   T   +LFF++ G  +      LP G       
Sbjct: 204 SFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPI 250


>gi|133853611|gb|ABO39036.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 87.9 bits (216), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 32/37 (86%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IY+AL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYNALVRMAQDFSMRDPLI 37


>gi|312207859|pdb|3KUA|A Chain A, Ccdbvfi:gyra14vfi
 gi|312207860|pdb|3KUA|B Chain B, Ccdbvfi:gyra14vfi
          Length = 153

 Score = 87.9 bits (216), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 8/133 (6%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KARDRAH+L GLA+A+AN+DE++ +I+ +P P  A+  L+ R W+  ++ 
Sbjct: 21  MTRRTIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVA 80

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++     +             +G  +L+E Q +AILELRL RLTGL  + I +E  +L
Sbjct: 81  SMLERAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKAL 140

Query: 481 GIEIKECLDILSS 493
             EI E + IL+S
Sbjct: 141 LDEIAELMHILAS 153


>gi|47420012|gb|AAT27358.1| DNA gyrase A [Campylobacter jejuni]
          Length = 172

 Score = 87.5 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 74/198 (37%), Positives = 108/198 (54%), Gaps = 26/198 (13%)

Query: 391 AIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLS 450
            IA+ N+DEV+ +I+ S +  TAR  L+ +                            LS
Sbjct: 1   KIALDNIDEVIALIKNSSDNNTARDSLVAK--------------------------FGLS 34

Query: 451 EVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKD 510
           E+Q  AIL+++L RLTGL R+ I NEL  L  EI    +IL S + L  +I+ EL  ++ 
Sbjct: 35  ELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRS 94

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVV 570
           + D PR T+I +   D++ ED I  E+MVVT++H GY+KRVP   Y  Q+RGGKG+  V 
Sbjct: 95  KFDVPRITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKLAVT 154

Query: 571 MRDEDFVTDLFIVSTHTS 588
             D+DF+      +TH +
Sbjct: 155 TYDDDFIESFSTANTHDT 172



 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 676 MKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLA----- 730
           + LD+ DE++++   + +N+   T +     +F +S ++      +  +  + L      
Sbjct: 2   IALDNIDEVIALIKNSSDNN---TARDSLVAKFGLSELQ------ANAILDMKLGRLTGL 52

Query: 731 KGDQVIS-MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEER 789
           + +++ + +A ++   A  +E +     +    R    +      +   + +E +  +  
Sbjct: 53  EREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDID 112

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
            ++L   E  ++T++ +G+ KR  S  +    R GKG
Sbjct: 113 IEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKG 149


>gi|303398797|emb|CBW46778.1| P1192R [African swine fever virus Georgia 2007/1]
          Length = 1192

 Score = 87.5 bits (215), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 95/473 (20%), Positives = 168/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGVKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  D
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKD 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+ VI         S  R 
Sbjct: 880  NPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTYVI---------SEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------- 317
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK         
Sbjct: 931  IITITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVE 988

Query: 318  -----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    D I N L     L S   +N V   G   E  T   IL A++ +R E+  +R
Sbjct: 989  EFKETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNTYYEILYAWLPYRRELYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + R  +   +   +    E+   +    + + A R L +  +   +   +I 
Sbjct: 1047 LMREHAVLKLRIIMETAIVRYINESAELN--LSHYEDEKEASRILSEHGFPPLNHTLIIS 1104

Query: 433  LIDDSSYTIGSDG-----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                S   +         T  LS      ++  +  R+  + +   R +    
Sbjct: 1105 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1157


>gi|1333777|emb|CAA43745.1| unnamed protein product [Mycoplasma genitalium]
          Length = 131

 Score = 87.5 bits (215), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 77/134 (57%), Gaps = 4/134 (2%)

Query: 532 CIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLF 591
            I  E++V+T+S  GY+KR+ +  Y  Q RGG G  G+    +D ++ L + STH+ +LF
Sbjct: 2   LIKVENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLF 61

Query: 592 FSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFA 651
           F+  G VY+ +  ++P G    +G   +N++ + + ERI +++         ++ Y  F 
Sbjct: 62  FTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNY----DDGYFFFC 117

Query: 652 TKHGNVRRNKLSDF 665
           TK+G V+R  L++F
Sbjct: 118 TKNGIVKRTSLNEF 131



 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 6/101 (5%)

Query: 797 EQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILV 856
           E  ++T+S  G+ KR     + + +R G G++       + I  L      + +  ++  
Sbjct: 6   ENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYVDDSISQL---LVCSTHSDLLFF 62

Query: 857 SDKGTLIRVPVNEIRIASRATKG---VVIFSTAKDERVVSV 894
           +DKG + R+  ++I    R  KG   V +    KDER+ S+
Sbjct: 63  TDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSL 103



 Score = 44.0 bits (102), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ--IILVS 857
           +L  ++KG   R  ++      R+ KGI A ++ KI +   + ++  VN+ D       +
Sbjct: 59  LLFFTDKGKVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCT 118

Query: 858 DKGTLIRVPVNE 869
             G + R  +NE
Sbjct: 119 KNGIVKRTSLNE 130



 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           ++  +  G   R  + A      R  VGV+G++    D  IS  +V    +D        
Sbjct: 9   VITMSTNGYLKRIGVDAYN-LQHRGGVGVKGLTTYVDDS-ISQLLVCSTHSDLLFFTDKG 66

Query: 756 KHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLK---EQFILTVSEKGFGKRT 812
           K    +   I         +   + ++    E  C  L +    + +    ++ G  KRT
Sbjct: 67  KVYRIRAHQIPYGFRTNKGIPAVNLIKIEKDERICSLLSVNNYDDGYFFFCTKNGIVKRT 126

Query: 813 SSYDF 817
           S  +F
Sbjct: 127 SLNEF 131


>gi|939957|emb|CAA51386.1| gyrA [Mycobacterium tuberculosis H37Rv]
          Length = 36

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IYD+L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|167946604|ref|ZP_02533678.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 41

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 31/41 (75%)

Query: 142 LLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182
           +LDDL K+TVDF PNYD S  EP VL AR PN+L+NG  GI
Sbjct: 1   MLDDLDKETVDFVPNYDNSEHEPAVLPARIPNLLINGSTGI 41


>gi|294671325|ref|ZP_06736176.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291306957|gb|EFE48200.1| hypothetical protein NEIELOOT_03034 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 72

 Score = 87.2 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +L++  G LIR  V +IR   RA  GV + +  + E++VS+ER+ E      A   E
Sbjct: 1   MLITSGGVLIRTKVEQIRETGRAAAGVRLINLDEGEQLVSLERVAEEPEDASASGEE 57



 Score = 48.6 bits (114), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMK 756
           +L T  G  +R  +  IR   GR + GVR I+L +G+Q++S+  V     D         
Sbjct: 1   MLITSGGVLIRTKVEQIRE-TGRAAAGVRLINLDEGEQLVSLERVAEEPEDASASGEENT 59

Query: 757 HMSA 760
             + 
Sbjct: 60  TEAN 63


>gi|452282|emb|CAA54444.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYD L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DVSIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|9628219|ref|NP_042805.1| topoisomerase II [African swine fever virus]
 gi|267149|sp|Q00942|TOP2_ASFB7 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|210654|gb|AAA42735.1| topoisomerase II [African swine fever virus]
 gi|780481|gb|AAA65341.1| topoisomerase II [African swine fever virus]
 gi|162849494|emb|CAN10461.1| Topoisomerase II [African swine fever virus OURT 88/3]
 gi|1097503|prf||2113434DU topoisomerase II
          Length = 1192

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 166/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGVKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  D
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKD 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+            S  R 
Sbjct: 880  NPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTY---------DISEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------- 317
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK         
Sbjct: 931  IITITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVE 988

Query: 318  -----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    D I N L     L S   +N V   G   E  +   IL A++ +R E+  +R
Sbjct: 989  EFKETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRELYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + R  +   +   +    E+   +    + + A R L +  +   +   +I 
Sbjct: 1047 LMREHAVLKLRIIMETAIVRYINESAELN--LSHYEDEKEASRILSEHGFPPLNHTLIIS 1104

Query: 433  LIDDSSYTIGSDG-----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                S   +         T  LS      ++  +  R+  + +   R +    
Sbjct: 1105 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1157


>gi|133853638|gb|ABO39037.1| GyrA [Brucella melitensis biovar Abortus 2308]
          Length = 37

 Score = 86.8 bits (213), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IY AL RMAQD+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYYALVRMAQDFSMRDPLI 37


>gi|452280|emb|CAA54445.1| DNA gyrase [Mycobacterium smegmatis]
          Length = 36

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IY  L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|116489838|gb|ABJ98822.1| topoisomerase IV subunit A [Enterobacter cloacae]
          Length = 34

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 72  VKCARISGEVMGKYHPHGNAAIYDALARMAQDWS 105
            K AR  G+V+GKYHPHG++A Y+A+  MAQ +S
Sbjct: 1   KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS 34


>gi|327342915|dbj|BAK09290.1| DNA gyrase subunit A [Streptococcus constellatus subsp. pharyngis]
          Length = 78

 Score = 86.4 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 828 RATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +  ++++ N  G L  +  VN ++ ++++++ G +IR  V  I    RAT GV +    K
Sbjct: 1   KTANITEKN--GPLAGLMAVNGDEDLMIITNTGVIIRTNVANISQTRRATLGVKVMRLDK 58

Query: 888 DERVVSVERIRESEIVDEAE 907
             ++V+   +      +  E
Sbjct: 59  GAQIVTFTSVEAENEKEVDE 78



 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
             + D+++ T  G  +R  ++ I     R ++GV+ + L KG Q+++   V   +    +
Sbjct: 19  NGDEDLMIITNTGVIIRTNVANI-SQTRRATLGVKVMRLDKGAQIVTFTSVEAENEKEVD 77

Query: 751 R 751
            
Sbjct: 78  E 78


>gi|312207855|pdb|3KU8|A Chain A, Ccdbvfi:gyra14ec
 gi|312207856|pdb|3KU8|B Chain B, Ccdbvfi:gyra14ec
          Length = 156

 Score = 86.0 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 77/136 (56%), Gaps = 8/136 (5%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++ 
Sbjct: 21  MTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVA 80

Query: 429 DLIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
            +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L
Sbjct: 81  AMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKEL 140

Query: 481 GIEIKECLDILSSRSR 496
             +I E L IL S  R
Sbjct: 141 LDQIAELLRILGSADR 156


>gi|156311443|ref|XP_001617785.1| hypothetical protein NEMVEDRAFT_v1g69871 [Nematostella vectensis]
 gi|156195794|gb|EDO25685.1| predicted protein [Nematostella vectensis]
          Length = 87

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
              +VV  TK G V++ KL DF +  ++G  A+ +   DE+L  +    +N I++  K G
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDFSRPRQTGVNAITIQEGDELLEAKLTDGDNYIMMAVKSG 60

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAK 731
           + + F  S +R   GR ++GV GI L+ 
Sbjct: 61  RAICFEESKVRP-TGRGAIGVNGIELSD 87



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 7/93 (7%)

Query: 796 KEQFILTVSEKGFGKRTSSYDFRISNRSGK-GIRATDVSKINEIGALVAVFPVNDNDQII 854
           + +F++  ++KG  K+T   DF   +R  + G+ A  + +      L+     + ++ I+
Sbjct: 1   EGKFVVLCTKKGIVKKTKLEDF---SRPRQTGVNAITIQEG---DELLEAKLTDGDNYIM 54

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
           +    G  I    +++R   R   GV     + 
Sbjct: 55  MAVKSGRAICFEESKVRPTGRGAIGVNGIELSD 87


>gi|197111784|gb|ACH43047.1| ParC subunit A of topoisomerase IV [Enterococcus faecium]
          Length = 51

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 66  EWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIE 112
            ++K + K A+  G +MG YHPHG+ +IY+A+ RM+QDW LR +LIE
Sbjct: 1   SYDKGFGKSAKSVGNIMGNYHPHGDISIYEAMVRMSQDWKLREVLIE 47


>gi|162849321|emb|CAN10212.1| Topoisomerase II [African swine fever virus Benin 97/1]
          Length = 1192

 Score = 86.0 bits (211), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 92/473 (19%), Positives = 166/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGVKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  D
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKD 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+            S  R 
Sbjct: 880  NPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTY---------DISEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------- 317
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK         
Sbjct: 931  IITITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVE 988

Query: 318  -----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    D I N L     L S   +N V   G   E  +   IL A++ +R E+  +R
Sbjct: 989  EFKETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRELYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + R  +   +   +    E+   +    + + A R L +  +   +   +I 
Sbjct: 1047 LMREHAVLKLRIIMETAIVRYINESAELN--LSHYEDEKEASRILSEHGFPPLNHTLIIS 1104

Query: 433  LIDDSSYTIGSDG-----TMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
                S   +         T  LS      ++  +  R+  + +   R +    
Sbjct: 1105 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTHRVEKIKKMQARLDKVEQ 1157


>gi|229891673|sp|P0C9C2|TOP2_ASFK5 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
          Length = 1192

 Score = 85.6 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 86/473 (18%), Positives = 172/473 (36%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGLKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A I  +
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYIDKN 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+ V+         S  R 
Sbjct: 880  NPKHELLHYAIDHKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVV---------SEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVIL 324
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK  + + +I 
Sbjct: 931  MITITELPLRVPTVAYIESIKK--SSNRMAFIEEIVDYSSSETIEILVKLKPNSLSRIIE 988

Query: 325  NQLYRYTSLQSLF------------SVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
               ++ T  Q+               +N V   G   E  +   IL A++ +R ++  +R
Sbjct: 989  E--FKETEEQNSIENFLRLRNCLHSHLNFVKPKGGIIEFNSYYEILYAWLPYRRDLYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK---- 428
                    + R  +   +   +    ++   +    + + A R L +  +   +      
Sbjct: 1047 LMRERAVLKLRIIMETAIVRYINESADLN--LSHYEDEKEAGRILSEHGFPPLNQSLITS 1104

Query: 429  -DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +   + + +   +    T  LS      ++  +  R+  + +   R +    
Sbjct: 1105 PEFATIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1157


>gi|133853699|gb|ABO39039.1| GyrA [Brucella abortus]
          Length = 37

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLI 111
           A + GEVMGKYHPHG+A+IYDAL RMA D+S+R  LI
Sbjct: 1   AGVVGEVMGKYHPHGDASIYDALVRMAXDFSMRDPLI 37


>gi|464905|sp|P34203|TOP2_ASFM2 RecName: Full=DNA topoisomerase 2; AltName: Full=DNA topoisomerase II
 gi|58648|emb|CAA78614.1| DNA topoisomerase type II [African swine fever virus]
 gi|450712|emb|CAA50820.1| DNA topoisomerase type II [African swine fever virus]
          Length = 1191

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 169/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 702  IERQIPNFLDGMTRARRKILAGGLKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 759

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 760  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 819

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  +
Sbjct: 820  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKN 878

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+ V+         S  R 
Sbjct: 879  NPKHELLHYAIERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVV---------SEQRN 929

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------- 317
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK         
Sbjct: 930  IITITELPLRVPTVAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVE 987

Query: 318  -----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    D I N L     L S   +N V   G   E  +   IL A++ +R +V  +R
Sbjct: 988  EFKETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKR 1045

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK---- 428
                    + R  +   +   +    ++   +    + + A R L +  +   +      
Sbjct: 1046 LMRERAVLKLRIIMETAIVRYINESADLN--LSHYEDEKEASRILSEHGFPPLNQSLITS 1103

Query: 429  -DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +   + + +   +    T  LS      ++  +  R+  + +   R +    
Sbjct: 1104 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1156


>gi|262135|gb|AAB24598.1| type II DNA topoisomerase homolog [African swine fever virus ASFV,
            Malawi LIL20/1, Peptide, 1191 aa]
          Length = 1191

 Score = 85.2 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 89/473 (18%), Positives = 169/473 (35%), Gaps = 48/473 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 702  IERQIPNFLDGMTRARRKILAGGLKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 759

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 760  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 819

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  +
Sbjct: 820  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKN 878

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+ V+         S  R 
Sbjct: 879  NPKHELLHYAIERKITVLPLRPSNYNFKGHLKRFGQYYYSYGTYVV---------SEQRN 929

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------- 317
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK         
Sbjct: 930  IITITELPLRVPTVAYIESIKK--SSNRMAFIEEIIDYSSSETIEILVKLKPNSLNRIVE 987

Query: 318  -----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    D I N L     L S   +N V   G   E  +   IL A++ +R +V  +R
Sbjct: 988  EFKETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRDVYQKR 1045

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK---- 428
                    + R  +   +   +    ++   +    + + A R L +  +   +      
Sbjct: 1046 LMRERAVLKLRIIMETAIVRYINESADLN--LSHYEDEKEASRILSEHGFPPLNQSLITS 1103

Query: 429  -DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480
             +   + + +   +    T  LS      ++  +  R+  + +   R +    
Sbjct: 1104 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQ 1156


>gi|67464191|pdb|1X75|A Chain A, Ccdb:gyra14 Complex
 gi|67464192|pdb|1X75|B Chain B, Ccdb:gyra14 Complex
          Length = 132

 Score = 85.2 bits (209), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 8/132 (6%)

Query: 370 VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
            RRT + L KARDRAH+L  LA+A+AN+D ++ +IR +P P  A+  L+   W   ++  
Sbjct: 1   TRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAA 60

Query: 430 LIDLIDDSSYTIG--------SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           +++   D +             DG  YL+E Q +AIL+LRL +LTGL  + + +E   L 
Sbjct: 61  MLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELL 120

Query: 482 IEIKECLDILSS 493
            +I E L IL S
Sbjct: 121 DQIAELLRILGS 132


>gi|213585067|ref|ZP_03366893.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 125

 Score = 84.8 bits (208), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 58/125 (46%), Positives = 83/125 (66%)

Query: 484 IKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVS 543
           I E L IL S  RL+ +I++E+  ++D+    RRT I     D+  ED I +ED+VVT+S
Sbjct: 1   IAELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLS 60

Query: 544 HLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKV 603
           H GYVK  PL+ Y AQRRGGKG+S   +++EDF+  L + +TH ++L FSS G +Y  KV
Sbjct: 61  HQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKV 120

Query: 604 WRLPI 608
           ++LP 
Sbjct: 121 YQLPE 125



 Score = 60.2 bits (144), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 3/127 (2%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +     +    R       +    +  + +  N ++   ++L  +E  ++T+S 
Sbjct: 2   AELLHILGSADRLMEVIREEMELIRDQFGDERRTEITANSADINIEDLISQEDVVVTLSH 61

Query: 806 KGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
           +G+ K     D+    R GKG  A  + + + I  L      N +D I+  S +G L  +
Sbjct: 62  QGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRL---LVANTHDTILCFSSRGRLYWM 118

Query: 866 PVNEIRI 872
            V ++  
Sbjct: 119 KVYQLPE 125


>gi|452284|emb|CAA54446.1| DNA gyrase [Mycobacterium smegmatis str. MC2 155]
          Length = 36

 Score = 84.5 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 22/36 (61%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IY  L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DVSIYGTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|291289555|emb|CBH29212.1| BA71V-P1192R (i7R) [African swine fever virus E75]
          Length = 1145

 Score = 84.5 bits (207), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 91/458 (19%), Positives = 162/458 (35%), Gaps = 48/458 (10%)

Query: 38   LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYD 95
            + R IP+  DG+    R+IL G ++     N +  K  +  G V     YH HG+ ++  
Sbjct: 703  IERQIPNFLDGMTRARRKILAGGVKC-FASNNRERKVFQFGGYVADHMFYH-HGDMSLNT 760

Query: 96   ALARMAQDW---SLRLLLIEGQGNFGSV--DGDPPAAERYTECRL-QKAAHFLLDDLGKD 149
            ++ + AQ +   S    +  G G+FGS    G    + RY   +L  +    +       
Sbjct: 761  SIIKAAQYYPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW 820

Query: 150  TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI--D 207
             + +    DG   EP       P  ++  G   + G         L +++    A +  D
Sbjct: 821  LLPYVFE-DGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILALVRAYVDKD 879

Query: 208  NPDIDLDAL---MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDRE 264
            NP  +L       +I   P  P+     G       Y    G+            S  R 
Sbjct: 880  NPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSYGTY---------DISEQRN 930

Query: 265  QIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRG------- 317
             I +TE+P +V   A +E I +     R+  I ++ D S  +   ++++LK         
Sbjct: 931  IITITELPLRVPTVAYIESIKK--SSNRMTFIEEIIDYSSSETIEILVKLKPNSLNRIVE 988

Query: 318  -----ASADVILNQLYRYTSLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRR 372
                    D I N L     L S   +N V   G   E  +   IL A++ +R E+  +R
Sbjct: 989  EFKETEEQDSIENFLRLRNCLHS--HLNFVKPKGGIIEFNSYYEILYAWLPYRRELYQKR 1046

Query: 373  TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
                    + R  +   +   +    E+   +    + + A R L +  +   +   +I 
Sbjct: 1047 LMREHAVLKLRIIMETAIVRYINESAELN--LSHYEDEKEASRILSEHGFPPLNHTLIIS 1104

Query: 433  LIDDSSYTIGSDG-----TMYLSEVQTRAILELRLARL 465
                S   +         T  LS      ++  +  R+
Sbjct: 1105 PEFASIEELNQKALQGCYTYILSLQARELLIAAKTRRV 1142


>gi|326581989|gb|ADZ96943.1| DNA gyrase A subunit [Klebsiella pneumoniae]
          Length = 134

 Score = 84.1 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 57/120 (47%), Positives = 78/120 (65%)

Query: 444 DGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQ 503
           +G  YL+E Q +AIL+LRL +LTGL  + + +E   L  +I E L IL+S  RL+ +I++
Sbjct: 15  NGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQIAELLRILASSERLMEVIRE 74

Query: 504 ELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGG 563
           EL  ++D+    RRT I     D+  ED I +ED+VVT+SH GYVK  PLS Y  QRRGG
Sbjct: 75  ELELIRDQFGDKRRTEITANPADINIEDLINQEDVVVTLSHQGYVKYQPLSDYEGQRRGG 134



 Score = 38.6 bits (88), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 31/79 (39%)

Query: 746 ADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSE 805
           A+    +   + +    R       +    K  + +  N ++   ++L  +E  ++T+S 
Sbjct: 56  AELLRILASSERLMEVIREELELIRDQFGDKRRTEITANPADINIEDLINQEDVVVTLSH 115

Query: 806 KGFGKRTSSYDFRISNRSG 824
           +G+ K     D+    R G
Sbjct: 116 QGYVKYQPLSDYEGQRRGG 134


>gi|320540649|ref|ZP_08040296.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
 gi|320029289|gb|EFW11321.1| putative DNA gyrase (type II topoisomerase), subunit A [Serratia
           symbiotica str. Tucson]
          Length = 79

 Score = 84.1 bits (206), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 37/56 (66%)

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++D GTL+R  V+E+ +  R T+GV +  TA+DE VV ++R+ E    +E +S E
Sbjct: 1   MITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLE 56



 Score = 41.7 bits (96), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 698 LTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKH 757
           + T  G  VR  +S +    GRN+ GV  I  A+ + V+ +  V     D +        
Sbjct: 1   MITDAGTLVRTRVSEV-SVVGRNTQGVTLIRTAEDENVVGLQRVAEPVEDEELDSLEPGA 59

Query: 758 MSAQRRLISGD 768
                     +
Sbjct: 60  EETGEEATPLE 70


>gi|30100900|gb|AAP21087.1| GyrA [Mycobacterium tuberculosis]
          Length = 36

 Score = 83.7 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +A+IY +L RMAQ WSLR  L++GQGNFGS   DPP
Sbjct: 1   DASIYHSLVRMAQPWSLRYPLVDGQGNFGSPGNDPP 36


>gi|313103856|pdb|3NO0|A Chain A, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103857|pdb|3NO0|B Chain B, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
 gi|313103858|pdb|3NO0|C Chain C, Aquifex Aeolicus Type Iia Topoisomerase C-Terminal Domain
          Length = 276

 Score = 83.3 bits (204), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 101/285 (35%), Gaps = 29/285 (10%)

Query: 624 LNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +   E      P            +   +  G V                  + L SR+E
Sbjct: 14  IPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRV-----YWIAGSQALQGSKVSLKSREE 68

Query: 684 ILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIV 741
            +      +   N +LL TK G   + P++         + G+  I L +GD+V+S+A  
Sbjct: 69  KIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY----KAQGMPIIKLTEGDEVVSIA-- 122

Query: 742 LHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
             +  +    +   K   A+  +         +            E     +   E ++L
Sbjct: 123 -SSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLL 181

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGT 861
            ++ KG  K+ S  +   +NR  KG              LV + P+ +  ++++ +  G 
Sbjct: 182 VITAKGRVKKISHEEIPKTNRGVKG-----TEVSGTKDTLVDLIPIKEEVELLITTKNGK 236

Query: 862 LI--RVPVNEIRIASRATKGVVIFSTA---KDERVVSVERIRESE 901
               ++   +I ++++ +    I  T    +D+ ++ V  I++SE
Sbjct: 237 AFYDKINQKDIPLSTKKS----IPRTRWKLEDDEIIKV-VIKKSE 276



 Score = 82.1 bits (201), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 76/218 (34%), Gaps = 21/218 (9%)

Query: 590 LFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVV 649
              S+ G VY     +   GS                  +                  ++
Sbjct: 39  FLVSNRGRVYWIAGSQALQGSK--------------VSLKSREEKIVGAFIREKFGNRLL 84

Query: 650 FATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFP 709
            ATK G V++  L++F      G   +KL   DE++S+ +   E  ILL TK G+  RF 
Sbjct: 85  LATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFS 143

Query: 710 ISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDT 769
           +  +       + GV+GI L K D+   + I      + +  +  +      +++   + 
Sbjct: 144 VREVPPST-PGARGVQGIKLEKNDETSGLRI-----WNGEPYLLVITAKGRVKKISHEEI 197

Query: 770 EEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKG 807
            +       + V G            +E  +L  ++ G
Sbjct: 198 PKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNG 235


>gi|6166255|gb|AAF04746.1| DNA gyrase subunit A [Bacteroides fragilis]
          Length = 52

 Score = 81.0 bits (198), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 12/57 (21%)

Query: 63  MGVEWNKKYVKCARISGEVMGKYHPHGNAAI------YDALARMAQDWSLRLLLIEG 113
           +G +WNK Y K AR+ G+V+GKYHPHG+ A+      + A       +SLR +L++G
Sbjct: 2   LGNDWNKAYKKSARVVGDVIGKYHPHGDLAVLQHHRPHGAA------FSLRYMLVDG 52


>gi|254718873|ref|ZP_05180684.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 305

 Score = 80.6 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 27/269 (10%)

Query: 472 DIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVE---G 523
           +IR E + L  E  +   +L+S +R    I  E+ +V+++         RRT        
Sbjct: 1   EIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMH 60

Query: 524 LLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIV 583
            L+   +  I RE + + VS  G++        RA +      S +  ++ D +   F  
Sbjct: 61  DLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSFKEGDKLKLAFHA 112

Query: 584 STHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSW 643
            T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I T           
Sbjct: 113 ETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDILTAF------VHD 164

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
            +  ++  +  GN      S+ +   R GK  M + + DE    +  +  + I +  +  
Sbjct: 165 PSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVSG-DHIAVVGENR 223

Query: 704 QCVRFPISAIRVFAGRNSVGVRGISLAKG 732
           + + FP+S I         GVR      G
Sbjct: 224 KMLVFPLSDIPEMT--RGKGVRLQKYKDG 250


>gi|83416333|gb|ABC18202.1| DNA gyrase subunit A [bacterium Ad#33]
          Length = 36

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRIPLVDSNGNFGSPGNDPA 36


>gi|301626919|ref|XP_002942632.1| PREDICTED: DNA topoisomerase 2-alpha, partial [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 134/392 (34%), Gaps = 35/392 (8%)

Query: 137  KAAHFLLDDLGKDTVDFRPNYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNL 195
              A  L   +    + F   YD + + EP       P VLVNG  GI  G +  IP ++ 
Sbjct: 755  PLARLLFPAMDDSVLKFM--YDDNQKVEPEWYIPIIPTVLVNGAEGIGTGWSCKIPNYDT 812

Query: 196  GEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSH 255
             E+V     ++D  +            P  P+     G          G    ++ G   
Sbjct: 813  REIVSNIGRLLDGLE----------PLPMLPSYKNFKGL-----IQELGPNQYILNG--- 854

Query: 256  IEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE---KRIVDIADLRDESDRQGYRVVI 312
             E +  D   I ++E+P +       E++ E +     K    I D ++       + V+
Sbjct: 855  -EVSVLDNTTIEISELPVRTWTQNYKEQVLEPMLNGTEKTPPLITDYKEYHTDTTVKFVV 913

Query: 313  ELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVV 369
            +L      +     L++   LQ+  + N + L  +     +  T   IL+ F   R +  
Sbjct: 914  KLTEQKLMEAEAAGLHKVFKLQTPLTCNSMVLFDHVGCLRKYETATDILREFFVLRLKYY 973

Query: 370  VRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKD 429
              R  +L+      A  L   A  +    E   +I   P  E   + L+QR +++  +K 
Sbjct: 974  SLRKDWLVGMLTAEASRLSNQARFILEKIEGKIVIENKPKKEL-IQMLVQRGYDSDPVKS 1032

Query: 430  LIDLIDDSSYTIGSDGTMYLSEVQT----RAILELRLARLTGLGRDDIRNELNSLGIEIK 485
                 +        +                +L + L  L+   +D++  + +    E++
Sbjct: 1033 WKQTQEKEEAGELLEEEEETEVNTAGPDFNYLLGMPLWNLSKEKKDELCKQRDVKNAELQ 1092

Query: 486  ECLDILSSRSRLLGIIKQELLSVKDELDTPRR 517
            +      S S L        +   D ++   R
Sbjct: 1093 DLK--KKSPSDLWKEDLSAFVEELDRVEAKER 1122


>gi|224613376|gb|ACN60267.1| DNA topoisomerase 2-alpha [Salmo salar]
          Length = 742

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 69/442 (15%), Positives = 138/442 (31%), Gaps = 35/442 (7%)

Query: 156 NYDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLD 214
           NYD + + EP       P VLVNG  GI  G A+ IP  ++ E+V+    +++  +    
Sbjct: 7   NYDDNQRVEPEWYIPIIPTVLVNGADGIGTGWASRIPNFDIREIVNNIHRMLNGEE---- 62

Query: 215 ALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQ 274
                   P  P+     G                       E    D   I ++E+P +
Sbjct: 63  ------PLPLLPSYKGFKGTIDQLMTNQYMNNG---------EVAIIDSTTIEISELPVK 107

Query: 275 VNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
               A  E + E +    EK    I D ++       R V+++      +     L++  
Sbjct: 108 TWTQAYKENVLEPMLNGTEKVQALITDYKEYHTDTAVRFVVKMTEERLREAEAAGLHKVF 167

Query: 332 SLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            LQ   + N + L  +     +   +  ILK F   R +  V R  +L       +  L 
Sbjct: 168 KLQQSLTCNSMVLFDHVGSLKKYELVQDILKDFFELRMKYYVLRKDWLAGMLGAESAKLT 227

Query: 389 GLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMY 448
             A  +    E   +I      +     L +  +++  +K   +  +       +     
Sbjct: 228 NQARFILEKIEGTLVIEN-KPKKQLILMLTEMGYDSDPVKAWKEAQEKDRSVEETQDDEE 286

Query: 449 L------SEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
                  +      +L + +  LT   ++++  + ++   E+        S + L     
Sbjct: 287 EDKEEDATGPDYNYLLNMPMWYLTKEKKEELCKQRDAKMTELNTLK--KKSPADLWKEDL 344

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
                  + ++   R      ++  +     V +    T      V     S  +A+   
Sbjct: 345 AAFTEELERVEEKDRQNANMPVVKGKAVKGKVVKVKRETTPQGRRVIPRITSTMKAEATR 404

Query: 563 GKGRSGVVMRDEDFVTDLFIVS 584
                     +E  +   F   
Sbjct: 405 KAVVMKGKKGEEVVMKMEFDAH 426


>gi|83416335|gb|ABC18203.1| DNA gyrase subunit A [bacterium Ad#39A]
 gi|83416337|gb|ABC18204.1| DNA gyrase subunit A [bacterium Ad#39B]
 gi|83416339|gb|ABC18205.1| DNA gyrase subunit A [bacterium Ad#43]
 gi|83416341|gb|ABC18206.1| DNA gyrase subunit A [bacterium Ad#46]
 gi|83416343|gb|ABC18207.1| DNA gyrase subunit A [bacterium BA#3]
 gi|83416347|gb|ABC18209.1| DNA gyrase subunit A [bacterium CP#9]
 gi|83416349|gb|ABC18210.1| DNA gyrase subunit A [bacterium CP#27]
 gi|83416351|gb|ABC18211.1| DNA gyrase subunit A [bacterium CP#41]
 gi|83416353|gb|ABC18212.1| DNA gyrase subunit A [bacterium CP#58]
 gi|83416355|gb|ABC18213.1| DNA gyrase subunit A [bacterium CP#65]
 gi|83416357|gb|ABC18214.1| DNA gyrase subunit A [bacterium CP#71]
 gi|83416363|gb|ABC18217.1| DNA gyrase subunit A [bacterium Den#20]
 gi|83416367|gb|ABC18219.1| DNA gyrase subunit A [bacterium KC1#4]
 gi|83416369|gb|ABC18220.1| DNA gyrase subunit A [bacterium KC1#5]
 gi|83416371|gb|ABC18221.1| DNA gyrase subunit A [bacterium KC1#8]
 gi|83416373|gb|ABC18222.1| DNA gyrase subunit A [bacterium KC1#11]
 gi|83416375|gb|ABC18223.1| DNA gyrase subunit A [bacterium PP#26A]
 gi|83416377|gb|ABC18224.1| DNA gyrase subunit A [bacterium PP#26B]
 gi|83416379|gb|ABC18225.1| DNA gyrase subunit A [bacterium PP#47]
 gi|83416381|gb|ABC18226.1| DNA gyrase subunit A [bacterium PP#50]
 gi|83416383|gb|ABC18227.1| DNA gyrase subunit A [bacterium PP#59]
 gi|83416385|gb|ABC18228.1| DNA gyrase subunit A [bacterium PP#67]
 gi|83416389|gb|ABC18230.1| DNA gyrase subunit A [bacterium Re#27]
 gi|83416393|gb|ABC18232.1| DNA gyrase subunit A [bacterium Re#38A]
 gi|83416397|gb|ABC18234.1| DNA gyrase subunit A [bacterium Re#60]
 gi|83416401|gb|ABC18236.1| DNA gyrase subunit A [bacterium Re#70B]
 gi|83416403|gb|ABC18237.1| DNA gyrase subunit A [bacterium Va#12]
 gi|83416405|gb|ABC18238.1| DNA gyrase subunit A [bacterium Va#23]
 gi|83416407|gb|ABC18239.1| DNA gyrase subunit A [bacterium WAT#4]
          Length = 36

 Score = 79.8 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|94502465|ref|ZP_01308887.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
 gi|94450978|gb|EAT13981.1| DNA gyrase A subunit [Candidatus Sulcia muelleri str. Hc
           (Homalodisca coagulata)]
          Length = 66

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query: 164 PVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGP 223
           P+VL    P++L  G  GIAVGMAT++P  ++ E  +   +  D  +I ++ LM+ I+ P
Sbjct: 2   PLVLPTCIPHLLFYGSSGIAVGMATHMPPPHIVESFEAICSYFDYKNITIEELMKYIKAP 61

Query: 224 DFPTG 228
            FP+G
Sbjct: 62  AFPSG 66


>gi|83416365|gb|ABC18218.1| DNA gyrase subunit A [bacterium Kar#17]
          Length = 36

 Score = 79.5 bits (194), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYDAL R+AQ WS+RL L++  GNFGS   DP 
Sbjct: 1   DTSIYDALVRLAQPWSMRLPLVDSNGNFGSPGNDPA 36


>gi|10444196|gb|AAG17769.1| gyrase subunit A [Methylobacterium extorquens AM1]
 gi|10444198|gb|AAG17770.1| gyrase subunit A [Methylophilus methylotrophus]
 gi|10444200|gb|AAG17771.1| gyrase subunit A [Methylobacillus sp. SK1]
          Length = 33

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 28/33 (84%)

Query: 82  MGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQ 114
           +GKYHPHG+ A+Y+ + RMAQ +SLR +L++GQ
Sbjct: 1   IGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQ 33


>gi|83416345|gb|ABC18208.1| DNA gyrase subunit A [bacterium BA#39]
          Length = 36

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|297180058|gb|ADI16283.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a
          subunit [uncultured bacterium HF0010_16H03]
          Length = 89

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRI------LFGMMQMGV 65
          ++    ++S+    + SYL YA+ VIL RA+P++ DGLKPV RRI      L  M+ + +
Sbjct: 3  QQNQNNTISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRIYMQCQSLVLMLDLNI 62

Query: 66 E 66
          +
Sbjct: 63 K 63


>gi|83416359|gb|ABC18215.1| DNA gyrase subunit A [bacterium Cu#20A]
          Length = 36

 Score = 78.7 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPA 36


>gi|83416361|gb|ABC18216.1| DNA gyrase subunit A [bacterium Cu#22]
          Length = 36

 Score = 78.3 bits (191), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           + +IYDAL R+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DTSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPA 36


>gi|270707329|ref|ZP_06223100.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
 gi|270315774|gb|EFA27905.1| DNA gyrase/topoisomerase IV, A subunit [Haemophilus influenzae
           HK1212]
          Length = 170

 Score = 77.9 bits (190), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 8/174 (4%)

Query: 231 ILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVRE 290
           I  ++ I+  Y  GRGSI +R     E        I+++ +P+Q + + ++ +IA+ +  
Sbjct: 2   ISPKSEIRKIYEQGRGSIKMRATWKKEDGE-----IIISALPHQSSPSKVIAQIADQMTA 56

Query: 291 KRIVDIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GY 347
           K++  + D+RDE+D +   R+V+  +      D ++  L+  T L+  + VNM  +   +
Sbjct: 57  KKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDH 116

Query: 348 KPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVV 401
           KP    L+ IL  ++ FR   V RR +Y L+K   R H+L GL IA  N+DEV+
Sbjct: 117 KPAVKGLLEILNEWLTFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVI 170


>gi|329725076|gb|EGG61570.1| putative DNA topoisomerase IV subunit A [Staphylococcus epidermidis
           VCU144]
          Length = 379

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 23/290 (7%)

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIA-MK 677
           I  L     E    I        +   L  V   +   +++     F     S   A + 
Sbjct: 12  IEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKK----KFKVDRLSTIEAEIS 67

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
               D+ + V     E  IL  T+ G   R   ++ R F   N+ GV  I L  GD+++ 
Sbjct: 68  EIKIDKEVMVP---SEEVILSLTQHGYIKR---TSTRSF---NASGVTEIGLKDGDRLLK 118

Query: 738 MAIVLHADA---DYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
              V   D      ++       +     +   +  +  S       +  +     ++  
Sbjct: 119 HESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDF 178

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
             E F +  ++ G  K++S+  F+ + R  K +    V   +E+  +V +    ++DQ+I
Sbjct: 179 KNEAFYIMATKNGMIKKSSASQFKTT-RFNKPLINMKVKDKDELINVVRL----ESDQLI 233

Query: 855 -LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIV 903
            +++ KG  +    NE+        GV   +   ++ VV  E + +S+ +
Sbjct: 234 TVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSI 283



 Score = 72.9 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 116/273 (42%), Gaps = 15/273 (5%)

Query: 634 MPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQE 693
           +   ++    +   ++  T+HG ++R     F   N SG   + L   D +L  E+   +
Sbjct: 69  IKIDKEVMVPSEEVILSLTQHGYIKRTSTRSF---NASGVTEIGLKDGDRLLKHESVNTQ 125

Query: 694 NDILLTTKLGQCVRFPISAIRVFAGRNSVGV---RGISLAKGDQVISMAIVLHADADYDE 750
           + +L+ T  G+ +  P+  +        +G    + + + + ++V+   +    D   + 
Sbjct: 126 DTVLVFTNKGRYLFIPVHKLADIR-WKELGQHISQIVPIDEDEEVV--NVYNEKDFKNEA 182

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTV-SEKGFG 809
                      ++  +   +     K   +++    +E    ++L+   ++TV + KG  
Sbjct: 183 FYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLESDQLITVLTHKGMS 242

Query: 810 KRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNE 869
              S+ +   +     G+++ ++        +V    VND+D II+V+ +G + R+  N 
Sbjct: 243 LTYSTNELSDTGLRAAGVKSINLKD---EDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV 299

Query: 870 IRIASRATKGVVIFS-TAKD-ERVVSVERIRES 900
           ++ A RA +G+ +     K   R+V+   ++E+
Sbjct: 300 LQEAKRAQRGITLLKELKKKPHRIVAGAVVKEN 332


>gi|403953|gb|AAB01009.1| DNA gyrase subunit A [Mycoplasma genitalium]
          Length = 98

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/99 (47%), Positives = 66/99 (66%), Gaps = 1/99 (1%)

Query: 201 GCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTS 260
           G + +IDNP      L+ +I+GPDFPTGA I+   GI++ + TG+G++VIR    IE+  
Sbjct: 1   GLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKGIESYFETGKGNVVIRSKVEIEQLQ 60

Query: 261 GDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADL 299
             R  +VVTEIPY VNK  ++EKI ELV+ + I  IAD+
Sbjct: 61  T-RSALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADI 98


>gi|213950466|gb|ACJ54506.1| ParC [Francisella sp. FSC156]
          Length = 174

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 99/175 (56%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++       +++  I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATTKSNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|83416395|gb|ABC18233.1| DNA gyrase subunit A [bacterium Re#58]
          Length = 36

 Score = 76.8 bits (187), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/36 (55%), Positives = 28/36 (77%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDALAR+AQ WS+R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYDALARLAQPWSMRMPLVDSNGNFGSPGNDPA 36


>gi|213856910|ref|ZP_03384150.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 66

 Score = 76.4 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/66 (60%), Positives = 49/66 (74%)

Query: 188 TNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGS 247
           TNIP HNL EV++GC+A ID+ DI ++ LME I GPDFPT A+I GR GI+ AY TGRG 
Sbjct: 1   TNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGK 60

Query: 248 IVIRGV 253
           + IR  
Sbjct: 61  VYIRAR 66


>gi|317498959|ref|ZP_07957242.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893792|gb|EFV15991.1| hypothetical protein HMPREF0996_02226 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 222

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 10/165 (6%)

Query: 575 DFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIM 634
                +        +  F++LG +++ KV  +P G  + +G  + N+ + +  +     +
Sbjct: 24  KEYKFIVPCMNTDKICIFTNLGVMHQIKVLDIPAGKFRDKGVPIDNLCNYDSTKEYIIQV 83

Query: 635 PFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT--- 691
               D  S  +  ++FAT    ++       +   +    A KL   DE++ V       
Sbjct: 84  L---DAESMIHSSLLFATAKSMLKVMDGE-LLNAAKRTVQATKLSE-DELIEVIPIDWME 138

Query: 692 -QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQV 735
             E+ ++L TK G  ++F +S I     ++++GVRG+ L+K D +
Sbjct: 139 GSEDKVVLQTKEGVFLKFLLSEI-PKKKKSALGVRGMKLSKDDSL 182



 Score = 47.1 bits (110), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 800 ILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVN----DNDQIIL 855
           +L  + K   K         + R+   ++AT +S+      L+ V P++      D+++L
Sbjct: 94  LLFATAKSMLKVMDGELLNAAKRT---VQATKLSE----DELIEVIPIDWMEGSEDKVVL 146

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            + +G  ++  ++EI    ++  GV     +KD+ + ++
Sbjct: 147 QTKEGVFLKFLLSEIPKKKKSALGVRGMKLSKDDSLTNI 185


>gi|60477495|gb|AAX21684.1| ParC [Francisella tularensis subsp. mediasiatica FSC147]
 gi|60477497|gb|AAX21685.1| ParC [Francisella tularensis subsp. mediasiatica]
 gi|213950476|gb|ACJ54511.1| ParC [Francisella novicida]
          Length = 174

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        ++  I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477489|gb|AAX21681.1| ParC [Francisella novicida]
 gi|213950468|gb|ACJ54507.1| ParC [Francisella sp. FSC159]
 gi|213950470|gb|ACJ54508.1| ParC [Francisella novicida]
 gi|213950472|gb|ACJ54509.1| ParC [Francisella novicida]
 gi|213950474|gb|ACJ54510.1| ParC [Francisella novicida]
          Length = 174

 Score = 76.0 bits (185), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYR--VVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +     V+       +   I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477483|gb|AAX21678.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477485|gb|AAX21679.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        ++  I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|83416399|gb|ABC18235.1| DNA gyrase subunit A [bacterium Re#70A]
          Length = 36

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+  ++  GNFGS   DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRMPHVDSNGNFGSPGNDPA 36


>gi|265983859|ref|ZP_06096594.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
 gi|264662451|gb|EEZ32712.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13]
          Length = 269

 Score = 75.2 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 22/221 (9%)

Query: 515 PRRTRIVE---GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVM 571
            RRT         L+   +  I RE + + VS  G++        RA +      S +  
Sbjct: 13  KRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWL--------RAMKGHLADFSTLSF 64

Query: 572 RDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERIT 631
           ++ D +   F   T   +LFF++ G  +      LP G  +  G+ +  ++ +   + I 
Sbjct: 65  KEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGG--RGHGEPIRILVDMENDQDIL 122

Query: 632 TIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCT 691
           T            +  ++  +  GN      S+ +   R GK  M + + DE    +  +
Sbjct: 123 TAF------VHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAKLCQRVS 176

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKG 732
             + I +  +  + + FP+S I         GVR      G
Sbjct: 177 G-DHIAVVGENRKMLVFPLSDIPEMT--RGKGVRLQKYKDG 214


>gi|60477487|gb|AAX21680.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477499|gb|AAX21686.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477501|gb|AAX21687.1| ParC [Francisella tularensis subsp. holarctica]
 gi|60477505|gb|AAX21689.1| ParC [Francisella tularensis subsp. holarctica FSC200]
 gi|60477511|gb|AAX21692.1| ParC [Francisella tularensis subsp. holarctica]
          Length = 174

 Score = 75.2 bits (183), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/175 (31%), Positives = 98/175 (56%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        ++  I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IKDESDDKEPVKIVLYSATIKKNIKKIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +P
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDP 172


>gi|60477417|gb|AAX21645.1| ParC [Wolbachia persica]
          Length = 174

 Score = 74.8 bits (182), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 97/175 (55%), Gaps = 7/175 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
             Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   EVYKSGNGSIRQQAVYGYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        ++  I+  L   T L+  + VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATTKKNIKKIMEHLLATTDLEKSYRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
            IL  ++ +R+  + RR +  L+K  DR H+L GL +A  N+DEV+ IIR   +P
Sbjct: 118 DILNQWLEYRKHTLRRRLQASLDKVLDRLHILEGLLVAFLNIDEVIDIIRNYDDP 172


>gi|315273175|ref|ZP_07869218.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
 gi|313616198|gb|EFR89280.1| DNA gyrase subunit A [Listeria marthii FSL S4-120]
          Length = 42

 Score = 74.4 bits (181), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 10 EEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGL 49
          E   + IT +++  EM+ S+L YA++VI+ RA+PD+RDGL
Sbjct: 3  ETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGL 42


>gi|60477491|gb|AAX21682.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477503|gb|AAX21688.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477509|gb|AAX21691.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 74.4 bits (181), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 55/174 (31%), Positives = 98/174 (56%), Gaps = 7/174 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +  S     +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHSN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        ++  I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|1419297|emb|CAA62576.1| gyrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 91

 Score = 74.1 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query: 847 VNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           V+D DQI    D GTL+R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E 
Sbjct: 2   VDDCDQIHDDHDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 61

Query: 907 ESTE 910
           ++ +
Sbjct: 62  DAID 65



 Score = 39.0 bits (89), Expect = 3.9,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 1/90 (1%)

Query: 691 TQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDE 750
              + I      G  VR  +S I    GRN+ GV  I  A+ + V+ +  V     D + 
Sbjct: 3   DDCDQIHDDHDAGTLVRTRVSEI-SVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEEL 61

Query: 751 RICYMKHMSAQRRLISGDTEEITSLKNDSS 780
                        +      +     +   
Sbjct: 62  DAIDGSVTEGDEDIAPEAESDDDVADDADE 91


>gi|153840090|ref|ZP_01992757.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149746310|gb|EDM57375.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 169

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 32/187 (17%)

Query: 295 DIADLRDESDRQG-YRVVIELKRGA-SADVILNQLYRYTSLQSLFSVNMVALN-GYKPER 351
            + DLRDESD +   R+VI  +      D+++N L+  T L+  + VN+  +    +P+ 
Sbjct: 1   MVEDLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQV 60

Query: 352 FTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPE 411
             L+ IL  ++ FR   V RR +Y L+K   R H+L GL +A  NLDEV+ IIR   +P 
Sbjct: 61  KGLVQILSEWIEFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDP- 119

Query: 412 TARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRD 471
             +  LM+R                            ++++Q  AIL+ +L  L  L   
Sbjct: 120 --KAVLMER--------------------------FGITDIQADAILDTKLRHLAKLEEM 151

Query: 472 DIRNELN 478
            IR E +
Sbjct: 152 KIRGEQD 158


>gi|38305350|gb|AAR16193.1| antigen MLAA-44 [Homo sapiens]
          Length = 373

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 73/378 (19%), Positives = 138/378 (36%), Gaps = 41/378 (10%)

Query: 157 YDGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDA 215
           YD + + EP       P VL+NG  GI  G A  +P ++  E+V+    +++  D     
Sbjct: 9   YDDNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLEGLD----- 63

Query: 216 LMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPY-- 273
                  P  P      G          G+    + G    E    DR  + +TE+P   
Sbjct: 64  -----PHPMLPNYKNFKG-----TIQELGQNQYAVSG----EIFVVDRNTVEITELPVRT 109

Query: 274 --QVNKAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYT 331
             QV K  +LE +     +K    I+D ++       + V+++     A      L++  
Sbjct: 110 WTQVYKEQVLEPMLNGT-DKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAEAAGLHKVF 168

Query: 332 SLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLV 388
            LQ+  + N + L  +     +  T+  ILK F   R      R ++L+      A    
Sbjct: 169 KLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLG--AESTK 226

Query: 389 GLAIAVANLDEVVRIIR-FSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTM 447
               A   L+++   I   + + +   + L+QR + +  +K   +  + ++    S    
Sbjct: 227 LNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEEDSQNQH 286

Query: 448 --------YLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                     S      IL + L  LT    +++  + ++ G E+ +      S S L  
Sbjct: 287 DDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDTKGREVNDLKR--KSPSDLWK 344

Query: 500 IIKQELLSVKDELDTPRR 517
                 +   D+++   R
Sbjct: 345 EDLAAFVEELDKVEAQER 362


>gi|60477493|gb|AAX21683.1| ParC [Francisella tularensis subsp. tularensis]
 gi|60477507|gb|AAX21690.1| ParC [Francisella tularensis subsp. tularensis]
          Length = 174

 Score = 74.1 bits (180), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 97/174 (55%), Gaps = 7/174 (4%)

Query: 239 NAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIAD 298
           + Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I +
Sbjct: 2   DVYKSGNGSIRQQAVYEYDNHGN----VVITKLPHQVSSAAVMEQIANELKQQKITWIKN 57

Query: 299 LRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLI 355
           ++DESD +    ++        ++  I+  L   T L+  F VNM  +    +P+   L+
Sbjct: 58  IQDESDDKEPVKIVLYSATIKKNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLL 117

Query: 356 GILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPN 409
            IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR   +
Sbjct: 118 DILNEWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDD 171


>gi|56807884|ref|ZP_00365716.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
           IV), A subunit [Streptococcus pyogenes M49 591]
          Length = 73

 Score = 73.7 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESE 901
            + I+++++KG +IR  V  I    RAT GV I     D ++V+   ++  +
Sbjct: 2   TEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPED 53



 Score = 45.2 bits (105), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 692 QENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
              DI++ T  G  +R  ++ I    GR ++GV+ + L    ++++  +V   D+   E 
Sbjct: 1   GTEDIMVITNKGVIIRTNVANI-SQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSIAEI 59

Query: 752 ICYMKHMSAQRR 763
               ++  ++ +
Sbjct: 60  NTDRENSISKNK 71



 Score = 39.0 bits (89), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 798 QFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDND 851
           + I+ ++ KG   RT+  +   + R+  G++   +   +    +V    V   D
Sbjct: 3   EDIMVITNKGVIIRTNVANISQTGRATLGVKIMKL---DADAKIVTFTLVQPED 53


>gi|83416387|gb|ABC18229.1| DNA gyrase subunit A [bacterium PS#22]
          Length = 36

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IY AL R+AQ W++R+ L++  GNFGS   DP 
Sbjct: 1   DSSIYVALVRLAQPWTMRMPLVDSNGNFGSPGNDPA 36


>gi|48429402|gb|AAT42469.1| ParC [Escherichia coli B]
          Length = 166

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 31/187 (16%)

Query: 380 ARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSY 439
              R H+L GL +A  N+DEV+ IIR    P+ A                          
Sbjct: 1   VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA-------------------------- 34

Query: 440 TIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
                    L+E Q  AILEL+L  L  L    IR E + L  E  +   IL+S  ++  
Sbjct: 35  ---LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNN 91

Query: 500 IIKQELLSVKDELDTPRRTRIVEGLL--DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYR 557
           ++K+EL +        RR+ + E      M + D +  E + + +S +G+V+        
Sbjct: 92  LLKKELQADAHAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDID 151

Query: 558 AQRRGGK 564
           A     K
Sbjct: 152 APGLNYK 158


>gi|242095824|ref|XP_002438402.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
 gi|241916625|gb|EER89769.1| hypothetical protein SORBIDRAFT_10g016438 [Sorghum bicolor]
          Length = 396

 Score = 73.3 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPA 126
           K A+ +  V     YH HG   + + + RMAQD+  S  + L+   G FG+    G   A
Sbjct: 299 KVAQFAAFVAECSAYH-HGKENLSNTIVRMAQDFVGSNNINLLRPNGQFGTRLEGGKDAA 357

Query: 127 AERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPV 165
           + RY    L      + ++     +D+  + DG   EP 
Sbjct: 358 SARYIFTELSSITRRIFNESDDILLDY-LSEDGQSIEPS 395


>gi|325067252|ref|ZP_08125925.1| DNA topoisomerase IV subunit A [Actinomyces oris K20]
          Length = 183

 Score = 72.5 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 618 LINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMK 677
           +  ++ +   E++  ++P        +N  +V AT  G ++R K  D    N      + 
Sbjct: 47  VRQLVDIEPEEKVVGLVPVGS----ADNPPIVLATAEGVIKRVKPGD-EPRNAESWEVIS 101

Query: 678 LDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
           L   D ++   T    + + L T   Q +RF  + +R   GR + G+ GISL +G +VI+
Sbjct: 102 LSEGDRVVFAGTAADTDFLALVTSDAQLLRFQAAKVRP-QGRGAGGMAGISLHEGARVIA 160

Query: 738 MAIVLHA 744
            A V   
Sbjct: 161 GAAVPEE 167



 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 20/185 (10%)

Query: 720 NSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDS 779
            + G  G     G +++ + +V   +    E    +   +  R+L+  + EE        
Sbjct: 7   TARGRIGAVTDTG-RLVLLDVVSTTEVPRTEGAPGLAGATQVRQLVDIEPEEKVVGLVPV 65

Query: 780 SVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIG 839
                               I+  + +G  KR    D     R+ +      +S+ +   
Sbjct: 66  G-------------SADNPPIVLATAEGVIKRVKPGDEP---RNAESWEVISLSEGDR-- 107

Query: 840 ALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRE 899
            +V      D D + LV+    L+R    ++R   R   G+   S  +  RV++   + E
Sbjct: 108 -VVFAGTAADTDFLALVTSDAQLLRFQAAKVRPQGRGAGGMAGISLHEGARVIAGAAVPE 166

Query: 900 SEIVD 904
             + +
Sbjct: 167 ELLAE 171


>gi|32481442|gb|AAP84067.1| topoisomerase [Enterococcus casseliflavus]
          Length = 38

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/33 (54%), Positives = 27/33 (81%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQDWSLR 107
           A+  G +MG +HPHG+++IY+A+ RM+QDW LR
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLR 33


>gi|156394521|ref|XP_001636874.1| predicted protein [Nematostella vectensis]
 gi|156223981|gb|EDO44811.1| predicted protein [Nematostella vectensis]
          Length = 394

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 104/307 (33%), Gaps = 27/307 (8%)

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHN 194
           L   +  L     +  + F  N D    EP   C   P +LVNG  GI  G +T +P ++
Sbjct: 2   LSTVSKMLFPPSDEPNLKF-LNEDNQRIEPEWYCPIIPTILVNGAEGIGTGYSTKVPNYD 60

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVS 254
              + +    +++  + +             P     +G     +          + G  
Sbjct: 61  PRAIAENIRKMMNGEEPEEM----------LPWYKNFIGTITKVDD-----TKYSVTGNI 105

Query: 255 HIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVV 311
            +     D   + +TE+P      +  E + E +    +K    I D ++       R V
Sbjct: 106 EV----IDDTTLEITELPIGTWTQSYKESVLEPMLHGTDKVPPCITDYKEYHTETRVRFV 161

Query: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIGILKAFVAFREEV 368
           I +      +     L++   L++  + + + L        +  T   ILK F   R E 
Sbjct: 162 ITMAENKMREAEQVGLHKKFKLEATINTSNMVLFDAMGCLKKYDTTREILKEFFTLRMER 221

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
            + R  Y+       +  L   A  +    E   +I   P  +     L+QR + +  +K
Sbjct: 222 YIMRKAYMEGMLTAESGKLNSQARFILEKIEGTIVIENKPKRDL-ITMLVQRGYPSDPVK 280

Query: 429 DLIDLID 435
              D  D
Sbjct: 281 AWKDSQD 287


>gi|167948876|ref|ZP_02535950.1| DNA gyrase, subunit A [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 65

 Score = 71.7 bits (174), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 856 VSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           +++ GTL+R PV ++    R T+GV +    K ER++ +ERI    + +E ++ E
Sbjct: 1   ITNGGTLVRTPVRDVSQMGRNTQGVTMIRLGKAERLIGIERI--ENLEEEQDAGE 53



 Score = 40.2 bits (92), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 699 TTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHM 758
            T  G  VR P+  +    GRN+ GV  I L K +++I +  + + + + D         
Sbjct: 1   ITNGGTLVRTPVRDVSQM-GRNTQGVTMIRLGKAERLIGIERIENLEEEQDAGEEVSDGA 59

Query: 759 SAQR 762
           S + 
Sbjct: 60  SDES 63


>gi|169842194|ref|ZP_02875299.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate
           TM7a]
          Length = 61

 Score = 71.4 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFG 118
           ++++Y A+ RMAQD+++R  LI+G GNFG
Sbjct: 33  DSSVYGAMVRMAQDFNMRYELIDGHGNFG 61


>gi|18308990|ref|NP_560924.1| hypothetical protein CPE0008 [Clostridium perfringens str. 13]
 gi|18143665|dbj|BAB79714.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 83

 Score = 71.0 bits (172), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 855 LVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
           +++ +G  IR+ V++I + SR+  GV +  T +DE VV++ +I      +E E T
Sbjct: 5   IINSQGVAIRINVSDISVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEIT 59



 Score = 41.7 bits (96), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 696 ILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYM 755
           + +    G  +R  +S I     R+++GV+ +   + + V+++A +     + +E I  +
Sbjct: 3   LCIINSQGVAIRINVSDI-SVTSRSAMGVKLMRTLEDEAVVTIAKISGDTNEEEEEITLL 61

Query: 756 KHMSAQRRLISGDTEEITSLKN 777
                   ++     E+   +N
Sbjct: 62  DESEDTNIIVEEVATEVKDEEN 83


>gi|321472241|gb|EFX83212.1| hypothetical protein DAPPUDRAFT_315938 [Daphnia pulex]
          Length = 206

 Score = 71.0 bits (172), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 20/180 (11%)

Query: 38  LGRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCAR----ISGEVMGKYHPHGNAAI 93
             R+ P L DGLK   R++LF ++      +K     AR    ++      Y P    ++
Sbjct: 3   YERSTPSLIDGLKLEQRKVLFTVL---NRNDKDVN-VARLALSVAEHTALHYEP---GSL 55

Query: 94  YDALARMAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKD 149
              +  MAQD+  S  + L+   G FG+    G   A+       + K    +       
Sbjct: 56  MRPIMWMAQDFVGSNNVSLLIPNGQFGTRHQGGKDAASPPLISTSISKLTRLIFHPQDDP 115

Query: 150 TVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNP 209
            +  R + D S  EP       P +LVNG   I  GM+ N    ++ E +   +   + P
Sbjct: 116 LLTHRMDGDQSI-EPEFYAPIIPLILVNGTSRI--GMSYN--PRDITENLKRMLDDDEEP 170


>gi|321473415|gb|EFX84382.1| hypothetical protein DAPPUDRAFT_3936 [Daphnia pulex]
          Length = 269

 Score = 70.6 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/222 (21%), Positives = 74/222 (33%), Gaps = 26/222 (11%)

Query: 158 DGSFQ-EPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDAL 216
           DG+   EP       P VLVNG  GI  G  T IP  N  E+++    +++         
Sbjct: 7   DGNQSIEPEYFAPIIPMVLVNGANGIGTGFKTKIPKQNPREIIENLKRMLNGEK------ 60

Query: 217 MEIIRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVN 276
                 P  P      G     + +           V   E        I +TE+P  V 
Sbjct: 61  ----PNPMDPWFKGYRGTVERIDQFNF---------VISGELAVLSPTTIEITELPVDVP 107

Query: 277 KAAMLEKIAELV---REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSL 333
                + + E +    E+    I D ++       R V+ +       V     +R   L
Sbjct: 108 TENYKKSVLEKLLCGSEECPPIITDYQEHHTDNNVRFVVTMTEKMMQQVESEGFHRAFKL 167

Query: 334 QSLFSVNMVALNGYKPERFTLI---GILKAFVAFREEVVVRR 372
           QS++S+  + L        T      I+  F   R E+  +R
Sbjct: 168 QSVYSLRSMLLYDSNGSLKTYNSVDDIMNEFYEVRLELYRKR 209


>gi|83416391|gb|ABC18231.1| DNA gyrase subunit A [bacterium Re#30]
          Length = 36

 Score = 70.2 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/36 (47%), Positives = 25/36 (69%)

Query: 90  NAAIYDALARMAQDWSLRLLLIEGQGNFGSVDGDPP 125
           +++IYDAL R+AQ WS+R+ L++   NFG    DP 
Sbjct: 1   DSSIYDALVRLAQPWSMRMPLVDSNDNFGLPGNDPA 36


>gi|291163431|gb|ADD80742.1| ParC [Francisella endosymbiont of Dermacentor andersoni]
          Length = 168

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/172 (30%), Positives = 93/172 (54%), Gaps = 7/172 (4%)

Query: 238 KNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIA 297
              Y +G GSI  + V   +        +V+T++P+QV+ AA++E+IA  +++++I  I 
Sbjct: 1   VXVYXSGXGSIRQQAVYEYDXHGN----VVITKLPHQVSXAAVMEQIANELKQQKITWIK 56

Query: 298 DLRDESDRQGYRVVIELKRGASADV--ILNQLYRYTSLQSLFSVNMVALN-GYKPERFTL 354
            ++DESD +    ++        ++  I+  L   T  +  F VNM  +    +P+   L
Sbjct: 57  XIQDESDDKEPVKIVLYSATTKKNIKKIMGHLLATTDXEKNFRVNMNMIGLDNRPQVKNL 116

Query: 355 IGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRF 406
           + IL  ++ +R+  + RR +  L+K  DR H+L GL IA  N+DEV+ IIR 
Sbjct: 117 LDILNQWLEYRKHTLRRRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRN 168


>gi|169836657|ref|ZP_02869845.1| hypothetical protein cdivTM_06067 [candidate division TM7
           single-cell isolate TM7a]
          Length = 54

 Score = 69.8 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 32/53 (60%)

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEA 906
           +L++ +GTLIR  +N+I + SR+  GV I     +E++ SV +I E+    E 
Sbjct: 1   MLITSEGTLIRTSINDITVQSRSATGVRIMKVRNNEKIASVVKITEAPDFSEE 53



 Score = 38.2 bits (87), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 697 LLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDER 751
           +L T  G  +R  I+ I     R++ GVR + +   +++ S+  +  A    +E+
Sbjct: 1   MLITSEGTLIRTSINDI-TVQSRSATGVRIMKVRNNEKIASVVKITEAPDFSEEK 54


>gi|255039923|gb|ACT99718.1| DNA gyrase subunit A [Burkholderia pseudomallei]
          Length = 30

 Score = 69.1 bits (167), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 22/30 (73%)

Query: 114 QGNFGSVDGDPPAAERYTECRLQKAAHFLL 143
           QGNFGSVDGD  AA RYTE R+ K  H LL
Sbjct: 1   QGNFGSVDGDNAAAMRYTEIRMAKIGHELL 30


>gi|218672927|ref|ZP_03522596.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56]
          Length = 305

 Score = 68.7 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 486 ECLDILSSRSRLLGIIKQELLSVKDELDT-----PRRTRIVEGLLDMED---EDCIVRED 537
           E   +L+S  +    +  E+  VK +         RRT+  +     E    +  I +E 
Sbjct: 13  EIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEQAIQQAMIEKEP 72

Query: 538 MVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGF 597
           + V +S  G++        RA +      + +  ++ D +   F   T   +L  ++ G 
Sbjct: 73  ITVVISEKGWI--------RALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGK 124

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            +     +LP G  +  G+ L  ++ ++  + +                 ++ +T  GN 
Sbjct: 125 AFTLGGDKLPGG--RGHGEPLRIMVDMDNDQAV-----LTAFVHDPARKQLIVSTA-GNG 176

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
                ++ +   R GK  M +   +E   +      + + +  +  + + FP++ +   +
Sbjct: 177 FVVAEAELVANTRKGKQIMNVALPEETQLLVPVCG-DHVAVVGENRKLLVFPLAQVPEMS 235

Query: 718 GRNSVGVRGISLAKG 732
                GVR      G
Sbjct: 236 --RGKGVRLQRYKDG 248


>gi|213622963|ref|ZP_03375746.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 73

 Score = 67.1 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 864 RVPVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R  V+EI +  R T+GV++  TA+DE VV ++R+ E    +E ++ +
Sbjct: 1   RTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAID 47


>gi|173000|gb|AAB59328.1| topoisomerase II [Saccharomyces cerevisiae]
          Length = 166

 Score = 66.4 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 161 FQEPV-VLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEI 219
             EP   L    P +LVNG  GI  G +T IP  N  E++     ++++ +++       
Sbjct: 1   TVEPEWYLPI-LPMILVNGAEGIGTGRSTYIPPFNPLEIIKNIRHLMNDEELEQMHPWF- 58

Query: 220 IRGPDFPTGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAA 279
                        G TG            +I G             + +TE+P +   + 
Sbjct: 59  ------------RGWTGTIEEIEP--LPYIIYGRIE----QIGDNVLEITELPARTWTST 100

Query: 280 MLEKIAELV--REKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLF 337
           + E +   +   +K    I D+ ++ D    + +I L     A       Y    L S  
Sbjct: 101 IKEYLLLGLSGNDKIKPWIKDMEEQHD-DNIKFIITLSPEEMAKTRKIGFYERFKLISPI 159

Query: 338 SVNMVA 343
           S+  + 
Sbjct: 160 SLMNMV 165


>gi|325068317|ref|ZP_08126990.1| DNA topoisomerase [Actinomyces oris K20]
          Length = 171

 Score = 64.4 bits (155), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 26/146 (17%)

Query: 373 TKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLID 432
           T++ L K R+RAH++ GL IA+ ++DEV+ +IR S +  TAR  LMQ             
Sbjct: 1   TRFRLGKRRERAHLVDGLLIAILDIDEVIAVIRSSDDAATARTRLMQ------------- 47

Query: 433 LIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS 492
                           L+E Q   ILEL+L RLT     ++  E + L  EI+    IL+
Sbjct: 48  -------------VFDLTEPQAGYILELQLRRLTKFSVIELEKERDELAREIEALEAILA 94

Query: 493 SRSRLLGIIKQELLSVKDELDTPRRT 518
               L  ++ +EL +V ++  TPRRT
Sbjct: 95  DDVLLRRVVSRELAAVAEQFGTPRRT 120


>gi|32481440|gb|AAP84066.1| topoisomerase [Enterococcus casseliflavus]
 gi|32481446|gb|AAP84069.1| topoisomerase [Enterococcus gallinarum]
          Length = 29

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 24/29 (82%)

Query: 75  ARISGEVMGKYHPHGNAAIYDALARMAQD 103
           A+  G +MG +HPHG+++IY+A+ RM+QD
Sbjct: 1   AKSVGNIMGNFHPHGDSSIYEAMVRMSQD 29


>gi|317498960|ref|ZP_07957243.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893793|gb|EFV15992.1| hypothetical protein HMPREF0996_02227 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 194

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 8/177 (4%)

Query: 339 VNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLD 398
           +NM+A+   +PE   L GI++    F  EV  R+ K LL+K  ++  +  GL  A   +D
Sbjct: 1   MNMLAIVDGRPETLDLKGIIENHTQFYYEVTRRKYKTLLSKLYEQREIKEGLIKACDMID 60

Query: 399 EVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAIL 458
            ++ IIR S + +  +  L +            ++   SS ++     +  ++ Q  AIL
Sbjct: 61  LIIEIIRGSKSQKEVKACLTKGDVG--------NINFKSSDSMIEATKLSFTDKQASAIL 112

Query: 459 ELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP 515
           +L+L RL GL    ++ E   +  +I+E  D+L++   L  +I++EL  +K  LD  
Sbjct: 113 DLKLYRLIGLEILMLKEEYEEILAKIEEYEDVLNNEKSLKNVIRKELDKIKKNLDAK 169


>gi|2197131|gb|AAB61299.1| GyrA [Streptomyces ambofaciens]
          Length = 88

 Score = 64.0 bits (154), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 2/89 (2%)

Query: 247 SIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESD-R 305
           SI +R V  +E+   +R+ +VVTE+PYQ N   + +KIA+LV++ ++  IAD+RDE+  R
Sbjct: 1   SITMRAVVEVEEIQ-NRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSLR 59

Query: 306 QGYRVVIELKRGASADVILNQLYRYTSLQ 334
            G R+VI LKR   A V+LN LY++T LQ
Sbjct: 60  TGQRLVIVLKRDVVAKVVLNNLYKHTDLQ 88


>gi|33316580|gb|AAQ04610.1| DNA gyrase subunit A [Mycobacterium szulgai]
          Length = 97

 Score = 63.7 bits (153), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 3/97 (3%)

Query: 573 DEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
            +      F  STH  +LFF++ G VY+ K + LP     ARG+ + N+L+    ERI  
Sbjct: 1   PQGXHRRHFCCSTHDWILFFTTQGRVYRAKAYELPEALRTARGQHVANLLAFQPEERIAQ 60

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQIN 669
           ++     E   +  Y+V AT++G V+++KL+DF    
Sbjct: 61  VIQIKSYE---DAPYLVLATQNGLVKKSKLTDFDSNR 94


>gi|297845356|ref|XP_002890559.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336401|gb|EFH66818.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 59

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 186 MATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEII-RGPDFPTGAVILGR 234
           MATNIP HNLGE+V+   A+I NP+  L  L+E +   PDFPTG  I+G 
Sbjct: 1   MATNIPPHNLGELVNVLCALIHNPEATLQELLEYMPPAPDFPTGGTIMGN 50


>gi|307101850|gb|EFN50438.1| hypothetical protein CHLNCDRAFT_55891 [Chlorella variabilis]
          Length = 154

 Score = 62.5 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/123 (26%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 566 RSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLN 625
           ++G  ++++D + ++  V+ H  +LFF++ G  Y  + + +P G+  A G A+  +L  +
Sbjct: 1   KAGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFD 60

Query: 626 QGERITTIMPFPEDESSWN--NLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDE 683
           +  RI  ++P     ++       VV  T+ G ++R  L  F  INRSG +AM +    E
Sbjct: 61  KSTRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRVPQE 120

Query: 684 ILS 686
           +  
Sbjct: 121 LRM 123



 Score = 45.9 bits (107), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 11/99 (11%)

Query: 795 LKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND----- 849
                +L  + +G      +YD     R+  G   T V   ++   + A+ PV+      
Sbjct: 19  NDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKSTRIAAMVPVSGFGAAL 78

Query: 850 ---NDQIILVSDKGTLIRVPVNE---IRIASRATKGVVI 882
                 +++++ KG + R  + +   I  +     GV +
Sbjct: 79  GSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRV 117



 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 11/115 (9%)

Query: 726 GISLAKGDQVISMAIVLHAD--------ADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
           G  L + D +  +  V   D                Y      +  + S  T+ +   K+
Sbjct: 3   GARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDKS 62

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSG---KGIRA 829
                          L   EQ ++ ++ KG  KRT+   F   NRSG    G+R 
Sbjct: 63  TRIAAMVPVSGFGAALGSAEQDVVMLTRKGQIKRTALKQFTSINRSGLVAMGVRV 117


>gi|7025462|gb|AAF35892.1| topoisomerase II [Mytilus edulis]
          Length = 226

 Score = 62.1 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEVMGK--YHPHGNAAIYDA 96
            R+IP L DGLKP  R+++F  ++  +    + +K A+++G V  +  YH HG  ++   
Sbjct: 167 ERSIPSLVDGLKPGQRKVIFTCIKRNLI---RELKVAQLAGSVAEQSSYH-HGEQSLMST 222

Query: 97  LARM 100
           +  +
Sbjct: 223 IINL 226


>gi|269967411|ref|ZP_06181471.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
 gi|269827999|gb|EEZ82273.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B]
          Length = 277

 Score = 62.1 bits (149), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 25/214 (11%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D +  E + V +S  G++        R  +       G+  +  D         ++   +
Sbjct: 14  DLVPSEPITVVLSEKGWI--------RHAKGHDVDAEGLNYKSGDKYLAHARGKSNQPAV 65

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y  +   LP    +++G+ +   L++  G  I  ++   ED+        + 
Sbjct: 66  FLGSDGRSYSLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMSEEDQLW------LV 117

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
            +  G     K +D +  NRSGK  + L +  EI++ +       ++IL  T  G+ + F
Sbjct: 118 GSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEILAITNQGRMLLF 177

Query: 709 PISAIRVFAGRNSVGVRGISL-----AKGDQVIS 737
           PI  +   A     G + I++      + ++V+S
Sbjct: 178 PIKDLPQLA--KGKGNKIINIPAAKAKEREEVLS 209



 Score = 45.2 bits (105), Expect = 0.059,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 13/115 (11%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  ++Q  L  S+ G+G      D    NRSGK   A      N    ++   
Sbjct: 101 SSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGK---ALVTLPANS--EIMTPK 155

Query: 846 PVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
            + D  +D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 156 EIEDLDSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 209


>gi|75763034|ref|ZP_00742824.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489481|gb|EAO52907.1| Topoisomerase IV subunit A [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 125

 Score = 61.3 bits (147), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 794 KLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQI 853
             K+Q IL V+++G  KR  + +   S R+ +G+      K N    +V +  V D++ +
Sbjct: 20  GDKDQLIL-VTQRGAVKRLKASEIEKSTRAKRGLVIFKELKRNPY-RIVGIEIVRDDELV 77

Query: 854 ILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVV 892
            + ++K  +  +     R   R + G ++        VV
Sbjct: 78  YMKTEKNIVEEIDPKAYRNKDRYSNGSLVLDVNDTGEVV 116



 Score = 41.3 bits (95), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 50/80 (62%), Gaps = 6/80 (7%)

Query: 827 IRATDVSKINEIGALVAVFPVN-DNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS- 884
           ++A ++ +      + +  P+N D DQ+ILV+ +G + R+  +EI  ++RA +G+VIF  
Sbjct: 1   MKAINLKE---DDYVASGKPLNGDKDQLILVTQRGAVKRLKASEIEKSTRAKRGLVIFKE 57

Query: 885 TAKDE-RVVSVERIRESEIV 903
             ++  R+V +E +R+ E+V
Sbjct: 58  LKRNPYRIVGIEIVRDDELV 77


>gi|153830649|ref|ZP_01983316.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
 gi|148873858|gb|EDL71993.1| topoisomerase IV, subunit A [Vibrio cholerae 623-39]
          Length = 254

 Score = 61.0 bits (146), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/264 (16%), Positives = 89/264 (33%), Gaps = 25/264 (9%)

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S  G++        R  +        +  +  D         ++   +F  S G  Y 
Sbjct: 1   VLSEKGWI--------RHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYS 52

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
            +   LP    + +G+ +   L++ +G  I  ++   ED+        +  +  G     
Sbjct: 53  LESHTLPSA--RGQGEPITGRLNVAEGTTIRQVVMGEEDQLW------LVGSDAGYGFVC 104

Query: 661 KLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRFPISAIRVFAG 718
           K  D +  NRSGK  + L    E+++ +       ++IL  T  G+ + FPI  +   + 
Sbjct: 105 KGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLS- 163

Query: 719 RNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEIT 773
               G + I++        ++V+S  +VL   A         K       L +   E   
Sbjct: 164 -KGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGR 222

Query: 774 SLKNDSSVEGNISEERCQELKLKE 797
                      ++    +     E
Sbjct: 223 RGALLPRGLQRVTAIEIETSAEPE 246



 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 783 GNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALV 842
              +  R   +  ++Q  L  S+ G+G      D    NRSGK +     +       ++
Sbjct: 75  AEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVI 134

Query: 843 AVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFS 884
           A     DND+I+ ++++G ++  P+ ++   S+  KG  I +
Sbjct: 135 ADL---DNDEILAITNQGRMLLFPIKDLPQLSK-GKGNKIIN 172


>gi|260363423|ref|ZP_05776273.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
 gi|308111420|gb|EFO48960.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030]
          Length = 270

 Score = 60.6 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 91/253 (35%), Gaps = 25/253 (9%)

Query: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590
           D +  E + V +S  G+V        R  +        +  +  D         +    +
Sbjct: 7   DLVPSEPITVVLSEKGWV--------RHAKGHDVDAESLNYKSGDKYLAHARGKSSQPAV 58

Query: 591 FFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVF 650
           F  S G  Y  +   LP    +++G+ +   L++  G  I  ++   ED+        + 
Sbjct: 59  FLGSDGRSYSLESHSLPSA--RSQGEPITGRLNITAGSSIRQVIMSEEDQLW------LV 110

Query: 651 ATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQCVRF 708
            +  G     K +D +  NRSGK  + L +  E+++ +       ++IL  T  G+ + F
Sbjct: 111 GSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEILAITNQGRMLLF 170

Query: 709 PISAIRVFAGRNSVGVRGISL-----AKGDQVISMAIVLHADADYDERICYMKHMSAQRR 763
           PI  +   A     G + I++      + ++V+S  I L   A         K       
Sbjct: 171 PIKDLPQLA--KGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGKRKLGLKPAD 228

Query: 764 LISGDTEEITSLK 776
           L +   E      
Sbjct: 229 LENFRGERGRRGS 241



 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           S  R   +  ++Q  L  S+ G+G      D    NRSGK +     +        V   
Sbjct: 94  SSIRQVIMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDL 153

Query: 846 PVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST-----AKDERVVS 893
              D+D+I+ ++++G ++  P+ ++   ++  KG  I +       + E V+S
Sbjct: 154 ---DSDEILAITNQGRMLLFPIKDLPQLAK-GKGNKIINIPAAKAKEREEVLS 202


>gi|18104622|gb|AAL59622.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|213024348|ref|ZP_03338795.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 78

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 247 SIVIRGVSHIE-KTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRDESDR 305
            + IR  + +E      RE I+V EIPYQVNKA ++EKIAELV++KR+  I+ LRDESD+
Sbjct: 1   KVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDK 60

Query: 306 QGYRVVIELKRGASADVI 323
            G R+VIE+KR A  +V+
Sbjct: 61  DGMRIVIEVKRDAVGEVV 78


>gi|70940701|ref|XP_740732.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56518648|emb|CAH81733.1| hypothetical protein PC000787.04.0 [Plasmodium chabaudi chabaudi]
          Length = 300

 Score = 59.8 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 78/233 (33%), Gaps = 58/233 (24%)

Query: 598 VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNV 657
            Y   V  +      ++G  +  ++  +                  +  Y++  +++G +
Sbjct: 1   AYLLNVSEIQTSLYDSKGIPISQLIKCSTTITGLAK-------YEQDKKYLIVCSENGKM 53

Query: 658 RRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFA 717
           +           +  K  +KL    + +    C   ++ ++ TK G  ++FP+S+++  +
Sbjct: 54  KIINNDV---FLKKKKKGIKLFKNKKNIFFNYCNSNDNCIVGTKNGYIIQFPLSSLK-IS 109

Query: 718 GRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKN 777
            +NS+G + +SL K D+V+ +    +   +                              
Sbjct: 110 KKNSLGNKCMSLKKDDKVVDLISYENNPENLKNLK------------------------- 144

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRAT 830
                                 I+ +S+ G GK     + ++  + GKG +  
Sbjct: 145 ----------------------IIFLSKNGHGKMIGLDEIKVQKKRGKGFKIM 175



 Score = 40.9 bits (94), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
           N ND  I+ +  G +I+ P++ ++I+ + + G    S  KD++VV +
Sbjct: 84  NSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMSLKKDDKVVDL 130



 Score = 39.0 bits (89), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 60/165 (36%), Gaps = 12/165 (7%)

Query: 725 RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGN 784
           +GI ++   Q+I  +  +   A Y++   Y+   S   ++   + +     K        
Sbjct: 17  KGIPIS---QLIKCSTTITGLAKYEQDKKYLIVCSENGKMKIINNDVFLKKKKKGIKLFK 73

Query: 785 ISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAV 844
             +             +  ++ G+  +      +IS ++  G +   +    +   +V +
Sbjct: 74  NKKNIFFNYCNSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMSLK---KDDKVVDL 130

Query: 845 FPVNDNDQ------IILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
               +N +      II +S  G    + ++EI++  +  KG  I 
Sbjct: 131 ISYENNPENLKNLKIIFLSKNGHGKMIGLDEIKVQKKRGKGFKIM 175


>gi|213051496|ref|ZP_03344374.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 70

 Score = 59.4 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 29/44 (65%)

Query: 867 VNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           ++EI +  R T+GV++  TA+DE VV ++R+ E    +E ++ +
Sbjct: 1   MSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAID 44


>gi|166890|gb|AAA32877.1| topoisomerase II [Arabidopsis thaliana]
          Length = 88

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 91  AAIYDALARMAQDW--SLRLLLIEGQGNFGSVD--GDPPAAERYTECRLQKAAHFLLDDL 146
            ++  A+  MAQD+  S  + L+   G FG+    G   A+ RY   +L      L    
Sbjct: 1   QSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFTKLSPVTRILFPKD 60

Query: 147 GKDTVDFRPNYDGSFQEPV-VLCARYPNVL 175
               +D   N DG   EP   +    P VL
Sbjct: 61  DDLLLD-YLNEDGQRIEPTWYMPI-IPTVL 88


>gi|18104620|gb|AAL59621.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 59.4 bits (142), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRSSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  +IL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLIKLIAELKEILANEEKVLEIIREELTEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|76664886|emb|CAJ17879.1| DNA gyrase alpha subunit [Candidatus Phytoplasma solani]
          Length = 135

 Score = 59.0 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)

Query: 427 IKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
           I+ +    D               E+Q++AILE+ L +L       +  E  +L  EI E
Sbjct: 9   IRLIKSSADIKEAQQNLMSQYRFDEIQSKAILEMSLQKLANQETQKLITEEANLTQEILE 68

Query: 487 CLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL-DMEDEDCIVREDMVVTVSHL 545
           C  I+ S+++   I+++ELL +K +    R+T +      D++DED I  + +VVT+++ 
Sbjct: 69  CQSIIDSQTKKEKILEKELLEIKKKYQDERKTVLNFDASLDVKDEDLIEEKTIVVTITNE 128

Query: 546 GYVK 549
           GY+K
Sbjct: 129 GYIK 132


>gi|226327143|ref|ZP_03802661.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
 gi|225204361|gb|EEG86715.1| hypothetical protein PROPEN_01008 [Proteus penneri ATCC 35198]
          Length = 459

 Score = 58.3 bits (139), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/411 (12%), Positives = 125/411 (30%), Gaps = 65/411 (15%)

Query: 537 DMVVTVSHLGYVKRVPLSVYRAQRRGGKGRS-GVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
             V+ +   G    +  +   + R  G+  +  +    E  V  +   S     L  +  
Sbjct: 19  QPVLFLDSTGRSYTLSPNDMPSGRSQGEPLTGKLTFPPEASVKYMLAGSAGQEYLLATKE 78

Query: 596 GFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN-LYVVFATKH 654
           G+        +   +   +G        L   E+   + P   D    N   + +  T  
Sbjct: 79  GYGTVLSYDEMETKNKTGKGL-------LTVSEKTELLAPLLVDPQKKNEQHWFIIITDK 131

Query: 655 GNVRRNKLSDFIQI----NRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPI 710
             +         ++      +  +A+  +  D ++       +++ L+ T  GQ      
Sbjct: 132 TRILAISAEQLNEMNKKGRGTRLVALGKEQGD-VIEQMLFAPKDEALIFTVDGQQEVLKA 190

Query: 711 SAIRVFAGRN-------------SVGVR-----GISLAKGDQVISMAIVLHADADYDERI 752
             I  F+G               +V V       I   KG  + + ++   +  DY + +
Sbjct: 191 EEINYFSGNAGDEPIPLKHLHPEAVTVIMSEKGLIRCQKGHSIDAKSVGFKSGDDYFDAV 250

Query: 753 CYMKHMSAQRRLISGDTEEITSLKNDSSVEGNIS-----------EERCQELKLKEQFIL 801
             M +        +G +  +      S      +           + R   +      I+
Sbjct: 251 EGMSNQPVHLIDTTGQSYTVDVDALPSGRSKGDALTERLKVQKGAQLRHVVMGENTDKIV 310

Query: 802 TVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND-------NDQII 854
             S+ G+G      D    N++GK +     +            P+          D I+
Sbjct: 311 MASDAGYGFICQVDDLTSKNKAGKSLLTLPEN----------ALPLPPQRLNNELTDLIM 360

Query: 855 LVSDKGTLIRVPVNEIRIA--SRATKGVVI---FSTAKDERVVSVERIRES 900
           +++  G ++    +E+      +  + V I    + + ++ V  +  + E+
Sbjct: 361 IITKGGRMLIFEASELPTMVKGKGNQMVSIPASQAASGEDNVAWLRVLPEN 411


>gi|18104624|gb|AAL59623.1| GyrA [Bacillus subtilis]
 gi|18104626|gb|AAL59624.1| GyrA [Bacillus subtilis]
 gi|18104630|gb|AAL59626.1| GyrA [Bacillus subtilis]
 gi|18104632|gb|AAL59627.1| GyrA [Bacillus subtilis]
 gi|18104638|gb|AAL59630.1| GyrA [Bacillus subtilis]
 gi|18104640|gb|AAL59631.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|18104642|gb|AAL59632.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLVKLIGELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|156347131|ref|XP_001621647.1| hypothetical protein NEMVEDRAFT_v1g144180 [Nematostella vectensis]
 gi|156207799|gb|EDO29547.1| predicted protein [Nematostella vectensis]
          Length = 170

 Score = 57.9 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMGVEWNKKYVKCARISGEV--MGKYHPHGN 90
            R+IP L DGLKP  R+++F   +     +K+ VK A+++G +  +  YH HG 
Sbjct: 118 ERSIPSLVDGLKPGQRKVMFTCFK---RNDKREVKVAQLAGSIAELSAYH-HGE 167


>gi|18104634|gb|AAL59628.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 57.9 bits (138), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|18104636|gb|AAL59629.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 57.9 bits (138), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  +L   I E  DIL++  ++L II++EL  +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQTLVKLIAELKDILANEYKVLEIIREELTEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|18104628|gb|AAL59625.1| GyrA [Bacillus subtilis]
          Length = 114

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 26/126 (20%)

Query: 395 ANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQT 454
            +LD V+ +IR S   E AR  L+++                            L+E Q 
Sbjct: 2   DHLDAVISLIRNSQTAEIARTGLIEQ--------------------------FSLTEKQA 35

Query: 455 RAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDT 514
           +AIL++RL RLTGL R+ I  E  SL   I E  DIL++  ++L II++EL+ +K+  + 
Sbjct: 36  QAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELMEIKERFND 95

Query: 515 PRRTRI 520
            RRT I
Sbjct: 96  ERRTEI 101


>gi|169836390|ref|ZP_02869578.1| hypothetical protein cdivTM_04680 [candidate division TM7
           single-cell isolate TM7a]
          Length = 34

 Score = 57.5 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 801 LTVSEKGFGKRTSSYDFRISNRSGKG 826
           LT++E+G+GKRT   ++R+ +R GKG
Sbjct: 4   LTITEEGYGKRTKLSEYRLQSRGGKG 29


>gi|242095826|ref|XP_002438403.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
 gi|241916626|gb|EER89770.1| hypothetical protein SORBIDRAFT_10g016452 [Sorghum bicolor]
          Length = 371

 Score = 56.3 bits (134), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 19/331 (5%)

Query: 169 ARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTG 228
           A  P +LVNG  GI  G +T IP +N  ++V   + +       L+ +    R       
Sbjct: 3   ANLPMILVNGAEGIGTGWSTKIPCYNPKDIVHN-LKLKIQGSETLEEMKPWFRHFHGEVS 61

Query: 229 AVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV 288
                    K+        I+            D+  + ++E+P +++      K+   +
Sbjct: 62  VKNKTTKTKKSGVTYTASGII---------KVVDKTTLKISELPVKISMENYERKLKTFM 112

Query: 289 REKRIVDIADLRDESDRQGYRVVIELKRGASADVILN--QLYRYTSLQSLFSV-NMVALN 345
            +     I     +       ++I L   +   V  N   L R   L++     NM  L+
Sbjct: 113 -DGEDKFIKSYEKKRGGNDVEIMIHLHENSENLVQANEVDLQRKFELRTSMGTSNMHLLD 171

Query: 346 GYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIR 405
                +       +  +   ++ +V      L  A+++   +  +      L ++ +   
Sbjct: 172 SNGIIKKN--DSPEQIIVNMQQKLVEMAGRDLKMAQNKVRFIKAVRTGEIKLFDMDKEGL 229

Query: 406 FSPNPETARRELMQRS--WNASDIKDLIDLIDDSSY-TIGSDGTMYLSEVQTRAILELRL 462
            +   E    E  Q    W   D     ++I    Y          L   +  A  E + 
Sbjct: 230 HTKLREMQFEEFEQAKPSWENQDGAKAQEIIRGYDYLLFMPIVNFTLMVEELEAECEHQK 289

Query: 463 ARLTGLGRDDIRNELNSLGIEIKECLDILSS 493
             ++ L +   +          +E LD    
Sbjct: 290 KNISELKKTKPKELWLKDLNAFEEELDHKDD 320


>gi|284098501|ref|ZP_06385898.1| hypothetical protein POR_0494 [Candidatus Poribacteria sp. WGA-A3]
 gi|283830519|gb|EFC34700.1| hypothetical protein POR_0494 [Candidatus Poribacteria sp. WGA-A3]
          Length = 57

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 866 PVNEIRIASRATKGVVIFSTAKDERVVSVERIRESEIVDEAEST 909
            V  +R   R  +GV +    + +RVV V ++ ES + +E+   
Sbjct: 1   KVEALRDIGRNAQGVRLIDMEESDRVVDVAKLAESAVDEESAGD 44


>gi|74149415|dbj|BAE36361.1| unnamed protein product [Mus musculus]
          Length = 375

 Score = 55.2 bits (131), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 66/332 (19%), Positives = 119/332 (35%), Gaps = 37/332 (11%)

Query: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKNAYA 242
             G +  IP  ++ EVV+    ++D  +            P  P+     G         
Sbjct: 1   GTGWSCKIPNFDVREVVNNIRRLLDGEE----------PLPMLPSYKNFKGTIE-----E 45

Query: 243 TGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELV---REKRIVDIADL 299
                 VI G    E    D   I ++E+P +       E++ E +    EK    I D 
Sbjct: 46  LASNQYVING----EVAILDSTTIEISELPIRTWTQTYKEQVLEPMLNGTEKTPSLITDY 101

Query: 300 RDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALNGYKP---ERFTLIG 356
           R+       + VI++     A+     L++   LQS  + N + L  +     +  T++ 
Sbjct: 102 REYHTDTTVKFVIKMTEEKLAEAERVGLHKVFKLQSSLTCNSMVLFDHVGCLKKYDTVLD 161

Query: 357 ILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRE 416
           IL+ F   R +    R ++LL      +  L   A  +    +   +I   P  E  +  
Sbjct: 162 ILRDFFELRLKYYGLRKEWLLGMLGAESSKLNNQARFILEKIDGKIVIENKPKKELIKV- 220

Query: 417 LMQRSWNASDIKDLID---LIDDSSYTIGSDGTMYLSEVQTRA------ILELRLARLTG 467
           L+QR +++  +K   +    + D      SD     S+    A      +L++ L  LT 
Sbjct: 221 LIQRGYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTFNYLLDMPLWYLTK 280

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLG 499
             +D++  + N    E+        S S L  
Sbjct: 281 EKKDELCKQRNEKEQELNTLK--QKSPSDLWK 310


>gi|242095808|ref|XP_002438394.1| hypothetical protein SORBIDRAFT_10g016324 [Sorghum bicolor]
 gi|241916617|gb|EER89761.1| hypothetical protein SORBIDRAFT_10g016324 [Sorghum bicolor]
          Length = 69

 Score = 54.8 bits (130), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 100 MAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           MAQD+  S  + L+   G FG+    G   A+ RY    L      + ++     +D+  
Sbjct: 1   MAQDFVGSNNINLLRPNGQFGTKLEGGKDAASARYIFTELSSITRRIFNENDDILLDYLH 60

Query: 156 NYDGSFQEPV 165
             DG   EP 
Sbjct: 61  E-DGQSIEPS 69


>gi|242095832|ref|XP_002438406.1| hypothetical protein SORBIDRAFT_10g016495 [Sorghum bicolor]
 gi|241916629|gb|EER89773.1| hypothetical protein SORBIDRAFT_10g016495 [Sorghum bicolor]
          Length = 69

 Score = 54.4 bits (129), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 100 MAQDW--SLRLLLIEGQGNFGSV--DGDPPAAERYTECRLQKAAHFLLDDLGKDTVDFRP 155
           MAQD+  S  + L+   G FG+    G   A+ RY    L      + ++     +D+  
Sbjct: 1   MAQDFFGSKNINLLRTNGQFGTRLEGGKDAASARYIFTELSSITRRIFNENDHILLDYLR 60

Query: 156 NYDGSFQEPV 165
             DG   EP 
Sbjct: 61  E-DGQSIEPS 69


>gi|289810787|ref|ZP_06541416.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 229

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 17/196 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 40  RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 97

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 98  PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 157

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFST------AKD 888
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +         D
Sbjct: 158 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAEAAKGD 212

Query: 889 ERVVSVERIRESEIVD 904
           + +  +  +  ++  D
Sbjct: 213 DGLAHLYVLPPTKHSD 228


>gi|294626547|ref|ZP_06705145.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599114|gb|EFF43253.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 260

 Score = 51.7 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 20/206 (9%)

Query: 528 EDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHT 587
           ++ + +  E M V +S  G+V        RA +      +G+  RD D +       +  
Sbjct: 10  DETEMVASEPMTVVLSQKGWV--------RAAKGHEVDPAGMSYRDGDGLLTAVRSRSTH 61

Query: 588 SVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647
            V F  S G  Y   V  LP            N   L       +   F    S+ N   
Sbjct: 62  QVAFLDSDGRAYSTAVHTLPSARG--------NGEPLTGRFSPASGAAFQVMASADNATR 113

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ--ENDILLTTKLGQC 705
            V A+ HG     +  +    N++GK  + L +   +L+    +    + I+  T  G  
Sbjct: 114 FVLASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNL 173

Query: 706 VRFPISAIRVFAGRNSVGVRGISLAK 731
           +  P + +         G + I + K
Sbjct: 174 LAVPATDVPELD--KGKGNKIIEIPK 197



 Score = 40.9 bits (94), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 14/171 (8%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R + G      G+S   GD +++ A+   +           +  S     +         
Sbjct: 31  RAAKGHEVDPAGMSYRDGDGLLT-AVRSRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEP 89

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
           L    S     + +         +F+L  S  G+G  T   +    N++GK +       
Sbjct: 90  LTGRFSPASGAAFQVMASADNATRFVL-ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGS 148

Query: 835 INEIGALVAVFPVND--NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIF 883
                 ++    V++   D+I+ V+  G L+ VP  ++    +  KG  I 
Sbjct: 149 -----HVLTPAQVSNPQTDRIVAVTSAGNLLAVPATDVPELDK-GKGNKII 193


>gi|37542704|gb|AAL89796.1| gyrase A [Mycobacterium gordonae]
          Length = 100

 Score = 51.7 bits (122), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 636 FPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI-LSVETCTQEN 694
             +     +  Y+V  T++G V+++KL+DF      G  A     + +            
Sbjct: 4   VIQIRGYTDAPYLVLGTRNGLVKKSKLTDFDSNRSGGSWAGNPARQRKAGRCGAVFWPTT 63

Query: 695 DILLTTKLGQCVRFPISA--IRVFAGRNSVGVRGIS 728
               +   G+ +RF  +   +R   GR + GV+G+ 
Sbjct: 64  TCCWSRPTGESIRFSATDEALRPM-GRATSGVQGMR 98


>gi|167949304|ref|ZP_02536378.1| DNA topoisomerase IV subunit A [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 105

 Score = 51.3 bits (121), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 29/118 (24%)

Query: 369 VVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIK 428
           + RR +Y L++  DR H+L GL IA  N+DEV+ IIR+  +P   + ELM+R        
Sbjct: 1   MTRRLQYRLDQVLDRLHLLEGLMIAYLNIDEVIAIIRYEDDP---KAELMRR-------- 49

Query: 429 DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKE 486
                               LSE Q  AIL LRL  L  L    IR E + L  E   
Sbjct: 50  ------------------FALSERQAEAILNLRLRHLAKLEEFKIRGEQDELEQERDW 89


>gi|68010286|ref|XP_670686.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56486176|emb|CAI03164.1| hypothetical protein PB301073.00.0 [Plasmodium berghei]
          Length = 258

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 51/179 (28%)

Query: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVR 707
           ++  +++G ++           +  K  +KL    + +    C   ++ ++ TK G  ++
Sbjct: 3   LIVCSENGKMKIINNDV---FLKKKKKGIKLFKNKKNIFFNYCNSNDNCIVGTKNGYIIQ 59

Query: 708 FPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISG 767
           FP+S+++  + +NS+G + +++ K D+V+ +    +   +                    
Sbjct: 60  FPLSSLK-ISKKNSLGNKCMNMKKDDKVVDLVSYENNSENLKNLK--------------- 103

Query: 768 DTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                           I+ +S+ G GK     + ++  + GKG
Sbjct: 104 --------------------------------IIFLSKNGHGKMIGVDEIKVQKKRGKG 130



 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N ND  I+ +  G +I+ P++ ++I+ + + G    +  KD++VV + 
Sbjct: 43  NSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCMNMKKDDKVVDLV 90



 Score = 37.8 bits (86), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ------IILVS 857
           ++ G+  +      +IS ++  G +  ++    +   +V +    +N +      II +S
Sbjct: 52  TKNGYIIQFPLSSLKISKKNSLGNKCMNMK---KDDKVVDLVSYENNSENLKNLKIIFLS 108

Query: 858 DKGTLIRVPVNEIRIASRATKG 879
             G    + V+EI++  +  KG
Sbjct: 109 KNGHGKMIGVDEIKVQKKRGKG 130


>gi|71042520|pdb|1ZVT|A Chain A, Structure Of The E. Coli Parc C-Terminal Domain
 gi|71042521|pdb|1ZVT|B Chain B, Structure Of The E. Coli Parc C-Terminal Domain
          Length = 256

 Score = 50.6 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 13/176 (7%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          +       A   +          
Sbjct: 15  RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 72

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +       
Sbjct: 73  PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---- 128

Query: 835 INEIGALVAVFPVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
             E   ++    + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 129 -PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 182


>gi|69250182|ref|ZP_00605118.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
 gi|68193990|gb|EAN08550.1| DNA gyrase C-terminal repeat, beta-propeller [Enterococcus faecium
           DO]
          Length = 251

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
           G++   GD   +   V          +       A   +                     
Sbjct: 21  GLNYKAGDSFKAA--VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 78

Query: 786 SEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVF 845
           +      ++  +Q +L  S+ G+G   +  D    NR+GK +         E   ++   
Sbjct: 79  ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-----PENAHVMPPV 133

Query: 846 PVND-NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
            + D +D ++ ++  G ++  PV+++   S+  KG  I +    E
Sbjct: 134 VIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 177


>gi|170064497|ref|XP_001867550.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167881880|gb|EDS45263.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 540

 Score = 50.2 bits (118), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 66  EWNKKYVKCARISGEV--MGKYHPHGNAAIYDALARMAQDW--SLRLLLIEGQGNFGSV- 120
             +K+ VK  +++G V  M  YH HG  ++   +  + Q++  S  + L+  +  FG+  
Sbjct: 429 RNDKREVKVTQLTGSVAEMSAYH-HGEQSLCSTIVDLTQNFVSSNNINLLYPRDQFGTRL 487

Query: 121 -DGDPPAAERYTECRLQKAA 139
                 A  R+    +    
Sbjct: 488 PGVKDSAKPRFILTMMSALT 507


>gi|213618678|ref|ZP_03372504.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 275

 Score = 49.8 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 11/175 (6%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G++   GD   +   V          I       A   +          
Sbjct: 34  RSAKGHDIDAPGLNYKAGDSFKAA--VKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGE 91

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
                      +      ++  +Q +L  S+ G+G   +  D    NR+GK +     + 
Sbjct: 92  PLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENA 151

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
                 LV     +++D ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 152 HVMP-PLV---IKDEHDMLLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 201


>gi|332141549|ref|YP_004427287.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551571|gb|AEA98289.1| DNA gyrase, A subunit [Alteromonas macleodii str. 'Deep ecotype']
          Length = 80

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 42/53 (79%)

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYR 329
           K  ++EKIAELV+EKRI  ++ LRDESD+ G R+VIE+KR  SA+V+LN LY 
Sbjct: 19  KHRLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVKRNESAEVLLNHLYA 71


>gi|213424003|ref|ZP_03356983.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. E01-6750]
          Length = 62

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 875 RATKGVVIFSTAKDERVVSVERIRESEIVDEAESTE 910
           R T+GV++  TA+DE VV ++R+ E    +E ++ +
Sbjct: 1   RNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAID 36


>gi|83318125|ref|XP_731459.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491511|gb|EAA23027.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 249

 Score = 49.4 bits (116), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 51/170 (30%)

Query: 657 VRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVF 716
           ++      F +  + G    K       +    C   ++ ++ TK G  ++FP+S+++  
Sbjct: 1   MKIINNDVFXKKKKKGIKLFKNKKN---IFFNYCNSNDNCIVGTKNGYIIQFPLSSLK-I 56

Query: 717 AGRNSVGVRGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           + +NS+G + I+L K D+VI +    +   +                             
Sbjct: 57  SKKNSLGNKCINLKKDDKVIDLVSYENNLENLKNIK------------------------ 92

Query: 777 NDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
                                  I+ +S+ G GK     + ++  + GKG
Sbjct: 93  -----------------------IIFLSKNGHGKMIGLDEIKVQKKRGKG 119



 Score = 41.3 bits (95), Expect = 0.69,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 28/48 (58%)

Query: 848 NDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSVE 895
           N ND  I+ +  G +I+ P++ ++I+ + + G    +  KD++V+ + 
Sbjct: 32  NSNDNCIVGTKNGYIIQFPLSSLKISKKNSLGNKCINLKKDDKVIDLV 79


>gi|77406476|ref|ZP_00783531.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
 gi|77174911|gb|EAO77725.1| DNA gyrase, A subunit, FRAMESHIFT [Streptococcus agalactiae H36B]
          Length = 30

 Score = 48.2 bits (113), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 22/29 (75%)

Query: 12 EEKGITSVSITDEMQNSYLTYAINVILGR 40
          ++K +  V++T EM+ S++ YA++VI+ R
Sbjct: 2  QDKNLVDVNLTSEMKTSFIDYAMSVIVAR 30


>gi|169842663|ref|ZP_02875768.1| hypothetical protein cdivTM_36174 [candidate division TM7
           single-cell isolate TM7a]
          Length = 31

 Score = 47.5 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 804 SEKGFGKRTSSYDFRISNRSGKGIRATDV 832
           SE G+GK T   +F    R G GI+A ++
Sbjct: 1   SENGYGKATKISNFPSHKRGGVGIKAVNL 29


>gi|261416000|ref|YP_003249683.1| ATPase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372456|gb|ACX75201.1| ATPase [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327742|gb|ADL26943.1| archaeal ATPase family protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 372

 Score = 47.5 bits (111), Expect = 0.011,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 99/341 (29%), Gaps = 23/341 (6%)

Query: 362 VAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRS 421
             + +  ++ RT   L +           +     LD+ ++I+  +     A   L+++ 
Sbjct: 42  RRYGKTGLIFRTFEDLKEKHYTCIYADIFSAQS--LDDFIKILSEAIVSSIANESLIKKF 99

Query: 422 WNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLG 481
           + A      +   D  S       T  L E   +  L L+        ++          
Sbjct: 100 FIALKNVRPLLSYDSMSGNPQVTFTFQLDE---QRKLTLKSIFDFLEKQEKQIILAIDEF 156

Query: 482 IEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVT 541
            +I+E      +   LL    Q++  VK      ++  + +             +     
Sbjct: 157 QQIREFK--EKNTEALLRTYIQQMHHVKFIFCGSKKHLMADM--------FTNAKKPFYE 206

Query: 542 VSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKE 601
            S   ++ R+    Y+        R+   +  +     L     HT    F         
Sbjct: 207 SSRTIHIDRIDSEKYKEFITHLFQRAKKNIDKDAVDFILDWTKRHTYYTQFVCN------ 260

Query: 602 KVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNK 661
                   S     + +   +S      I   +      +     Y++   K G+V++  
Sbjct: 261 --RVFAESSKNISLEDVKRTISSILRFEIPNFIERRNLITDKQWKYLIAVAKEGSVKQPT 318

Query: 662 LSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKL 702
            S F+     G  A        ++  E   +++D+   T  
Sbjct: 319 ASAFLMKYGIGSSATAKKILSTLVEKELLLEQSDLNGKTYS 359


>gi|213027129|ref|ZP_03341576.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 210

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 793 LKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
           ++  +Q +L  S+ G+G   +  D    NR+GK +     +       LV     +++D 
Sbjct: 45  MEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMP-PLV---IKDEHDM 100

Query: 853 IILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDE 889
           ++ ++  G ++  PV+ +   S+  KG  I +    E
Sbjct: 101 LLAITQAGRMLMFPVDSLPQLSK-GKGNKIINIPSAE 136


>gi|33322877|gb|AAQ07175.1|AF496483_1 DNA gyrase subunit A [Lactobacillus delbrueckii subsp. lactis]
          Length = 21

 Score = 47.5 bits (111), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/21 (71%), Positives = 16/21 (76%)

Query: 179 GGGIAVGMATNIPTHNLGEVV 199
             GIAVGM TNIP HNL EV+
Sbjct: 1   SSGIAVGMTTNIPPHNLSEVI 21


>gi|300709311|ref|XP_002996821.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
 gi|239606147|gb|EEQ83150.1| hypothetical protein NCER_100008 [Nosema ceranae BRL01]
          Length = 713

 Score = 46.7 bits (109), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 13  EKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62
           ++  + +SI+D +    + +++     R+IP++ DG KP  R+ILF   +
Sbjct: 637 DQRPSEISISDFINKELILFSMADNF-RSIPNVLDGFKPGQRKILFTCFK 685


>gi|238759144|ref|ZP_04620313.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
 gi|238702692|gb|EEP95240.1| DNA topoisomerase 4 subunit A [Yersinia aldovae ATCC 35236]
          Length = 265

 Score = 46.3 bits (108), Expect = 0.023,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 719 RNSVGV----RGISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITS 774
           R++ G      G+S   GD   + A  +              +      L S   +    
Sbjct: 23  RSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPL 82

Query: 775 LKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSK 834
               +   G   E+    +   +Q +L  S+ G+G   +  D    NR+GK         
Sbjct: 83  TGKLTPPPGAAIEQVL--MAPDDQKLLMASDAGYGFVCTFNDLVAKNRAGK---TMITLP 137

Query: 835 INEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAKDERVVSV 894
            N   AL  +     +D ++ ++  G ++  PV ++   S+           K  ++VS+
Sbjct: 138 ENAK-ALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSK----------GKGNKIVSI 186


>gi|532281|dbj|BAA05032.1| DNA gyrase subunit A [Mycoplasma capricolum subsp. capricolum
          ATCC 27343]
          Length = 37

 Score = 45.9 bits (107), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLR 46
           ++  I    + + + N +  YA  +I  RA+PD+R
Sbjct: 2  SDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVR 37


>gi|168742738|emb|CAM84565.1| putative DNA gyrase subunit A [Haemophilus parainfluenzae]
          Length = 19

 Score = 45.6 bits (106), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 87  PHGNAAIYDALARMAQDWS 105
           PHG+ A+Y  + RMAQ +S
Sbjct: 1   PHGDFAVYYTIVRMAQPFS 19


>gi|111305596|gb|AAI21351.1| LOC779457 protein [Xenopus (Silurana) tropicalis]
          Length = 757

 Score = 44.8 bits (104), Expect = 0.074,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 39  GRAIPDLRDGLKPVHRRILFGMMQMG 64
            R+IP L DGLKP  R++LF   +  
Sbjct: 730 ERSIPSLVDGLKPGQRKVLFTCFKKK 755


>gi|49296|emb|CAA78157.1| DNA Gyrase subunit A [Borrelia burgdorferi]
          Length = 96

 Score = 44.4 bits (103), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 38/76 (50%)

Query: 761 QRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRIS 820
           +RR I+   +     +     +  + +    +L  KE  ++ +++KGF KR S  ++++ 
Sbjct: 21  KRRTINLGLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQ 80

Query: 821 NRSGKGIRATDVSKIN 836
              GKG+ + D++  +
Sbjct: 81  GTGGKGLSSYDLNDGD 96


>gi|69251027|ref|ZP_00605192.1| DNA topoisomerase IV, A subunit [Enterococcus faecium DO]
 gi|68193895|gb|EAN08478.1| DNA topoisomerase IV, A subunit [Enterococcus faecium DO]
          Length = 36

 Score = 44.4 bits (103), Expect = 0.094,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 20/35 (57%)

Query: 11 EEEKGITSVSITDEMQNSYLTYAINVILGRAIPDL 45
          E  + +  +++ + M + +  Y+  +I  RA+PD+
Sbjct: 2  ENRQEVQELTLEEVMGDRFGRYSKYIIQERALPDI 36


>gi|224814614|gb|ACN65505.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 17

 Score = 44.4 bits (103), Expect = 0.099,   Method: Composition-based stats.
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 81 VMGKYHPHGNAAIYDAL 97
           MG YHPHG+ +IYD L
Sbjct: 1  TMGNYHPHGDLSIYDTL 17


>gi|156359791|ref|XP_001624948.1| predicted protein [Nematostella vectensis]
 gi|156211756|gb|EDO32848.1| predicted protein [Nematostella vectensis]
          Length = 146

 Score = 43.6 bits (101), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 814 SYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ-IILVSDKGTLIRVPVNEIRI 872
                   R  +G+ +    +  + G + ++      D+ +  +S KG    + V+ I  
Sbjct: 8   VSSISTKGRGDRGVSSISTKERGDRGGVSSISTKGRGDRGVSSISTKGMG-ELGVSSIST 66

Query: 873 ASRATKGVVIFSTAK-DER-VVSVE 895
             R  +GV   ST    +R V S+ 
Sbjct: 67  KGRGDRGVSSISTKGRGDRGVSSIS 91



 Score = 41.7 bits (96), Expect = 0.64,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 31/174 (17%)

Query: 717 AGRNSVGVRGISLAK-GDQVISMAIVLHADADYDERICYMKHMSAQR--RLISGDTEEIT 773
            GR   GV  IS    GD+ +S                  K    +    + +    E+ 
Sbjct: 1   KGRGDSGVSSISTKGRGDRGVSSISTKERGDRGGVSSISTKGRGDRGVSSISTKGMGELG 60

Query: 774 SLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVS 833
                +   G+            ++ + ++S KG G+           R  +G+ +    
Sbjct: 61  VSSISTKGRGDRGVSSISTKGRGDRGVSSISTKGMGEL-GVSSISTKGRGDRGVSSISTK 119

Query: 834 KINEIGALVAVFPVNDNDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK 887
              + G                           V+ I    R   GV   ST  
Sbjct: 120 GRGDRG---------------------------VSSISTKGRGNWGVSSISTKG 146


>gi|207110961|ref|ZP_03245123.1| DNA gyrase subunit A [Helicobacter pylori HPKX_438_CA4C1]
          Length = 74

 Score = 43.2 bits (100), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 778 DSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKG 826
           +   E    + + ++L   E  ++++S KG+ KR     +   NR GKG
Sbjct: 5   NIIEERAKGDYKIEDLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKG 53


>gi|224814616|gb|ACN65506.1| DNA gyrase subunit A [Mycobacterium tuberculosis]
          Length = 17

 Score = 43.2 bits (100), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 81 VMGKYHPHGNAAIYDAL 97
           MG YHPHG+A++YD L
Sbjct: 1  TMGNYHPHGDASMYDTL 17


>gi|7579895|gb|AAB32916.2| type II topoisomerase [Cryptosporidium parvum]
          Length = 45

 Score = 42.5 bits (98), Expect = 0.38,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 73  KCARISGEVM--GKYHPHGNAAIYDALARMAQDW 104
           K A+++G V     YH HG +++      MAQ++
Sbjct: 10  KVAQLAGYVAEHSAYH-HGESSLQSTNVNMAQNF 42


>gi|167855162|ref|ZP_02477933.1| dsDNA-mimic protein [Haemophilus parasuis 29755]
 gi|167853707|gb|EDS24950.1| dsDNA-mimic protein [Haemophilus parasuis 29755]
          Length = 980

 Score = 42.1 bits (97), Expect = 0.40,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 70/251 (27%), Gaps = 2/251 (0%)

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           S     + N V L      +     +    V F++  +   T     +    A       
Sbjct: 611 SASVSMAENGVVLQADGYTQNLAKLLKDKMVLFQQFTLSEDTLAQAKQRYLEALDRAEKE 670

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+   +EV+      P  E A++  M    + +DI+ + + + + + ++       LS+
Sbjct: 671 NALLQANEVITRFSSYPYFEMAKQRAMIEQVSLADIQQMREKLLNKATSLRVLAVGNLSD 730

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS-SRSRLLGIIKQELLSVKD 510
            Q + I                      +    ++   I   S       I        +
Sbjct: 731 NQVKQIATEVETVFNNQNSQIDLGRYLDINQSQRKLNHIKQISHEDNALTIAYFPKGYDE 790

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH-LGYVKRVPLSVYRAQRRGGKGRSGV 569
                R + + + L     +D    + +   V      +       +  Q      +  +
Sbjct: 791 LQGLSRASLLKDILSRWYFDDLRTDKQLGYVVYAYNTRIGTTSGLQFSVQSPTASPKEIM 850

Query: 570 VMRDEDFVTDL 580
              +  F   L
Sbjct: 851 QHNERFFKESL 861


>gi|219871201|ref|YP_002475576.1| protease III [Haemophilus parasuis SH0165]
 gi|219691405|gb|ACL32628.1| protease III [Haemophilus parasuis SH0165]
          Length = 980

 Score = 41.7 bits (96), Expect = 0.54,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 70/251 (27%), Gaps = 2/251 (0%)

Query: 332 SLQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLA 391
           S     + N V L      +     +    V F++  +   T     +    A       
Sbjct: 611 SASVSMAENGVVLQADGYTQNLAKLLKDKMVLFQQFTLSEDTLAQAKQRYLEALDRAEKE 670

Query: 392 IAVANLDEVVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSE 451
            A+   +EV+      P  E A++  M    + +DI+ + + + + + ++       LS+
Sbjct: 671 NALRQANEVITRFSSYPYFEMAKQRAMIEQVSLADIQQMREKLLNKATSLRVLAVGNLSD 730

Query: 452 VQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILS-SRSRLLGIIKQELLSVKD 510
            Q + I                      +    ++   I   S       I        +
Sbjct: 731 NQVKQIATEVETVFNNQNSQIDLGRYLDINQSQRKLNHIKQISHEDNALTIAYFPKGYDE 790

Query: 511 ELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSH-LGYVKRVPLSVYRAQRRGGKGRSGV 569
                R + + + L     +D    + +   V      +       +  Q      +  +
Sbjct: 791 LQGLSRASLLKDILSRWYFDDLRTDKQLGYVVYAYNTRIGTTSGLQFSVQSPTASPKEIM 850

Query: 570 VMRDEDFVTDL 580
              +  F   L
Sbjct: 851 QHNERFFKESL 861


>gi|104640687|gb|ABF73000.1| plastid DNA gyrase subunit A protein precursor [Karenia brevis]
          Length = 292

 Score = 41.7 bits (96), Expect = 0.55,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 68/179 (37%), Gaps = 8/179 (4%)

Query: 663 SDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSV 722
                   SGK    +   D ++++  C  ++ +L  ++ G+ +     A+      ++ 
Sbjct: 60  EQLKNKKPSGKPCFGMMPGDSLMNLYCCHDDDKLLAFSEDGRVLMMNALAVPPPRLISAQ 119

Query: 723 GVRGIS----LAKGDQVISMAIVLH--ADADYDERICYMKHMSAQRRLISGDTEEITSLK 776
           G         L +G +V ++ ++     D   DE +  +      ++++  +   +   K
Sbjct: 120 GSALSELLPALGEGHKVTALVVMPDFNFDDYEDEFLVLVTGCGIAKKVLIKELGRLRPGK 179

Query: 777 NDSSVEGNISEERCQELKLKEQFILT-VSEKGFGKRTSSY-DFRISNRSGKGIRATDVS 833
           +   +  +  +E     + +  F L   +EKG   R S    +R S+    G+ A  + 
Sbjct: 180 SLQCMRLDEGDELRWAHRARGNFALVCATEKGHVLRCSLGPQWRCSSLKVGGVAALRLR 238


>gi|257066940|ref|YP_003153196.1| Cna B domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256798820|gb|ACV29475.1| Cna B domain protein [Anaerococcus prevotii DSM 20548]
          Length = 4881

 Score = 41.3 bits (95), Expect = 0.68,   Method: Composition-based stats.
 Identities = 63/469 (13%), Positives = 131/469 (27%), Gaps = 53/469 (11%)

Query: 403  IIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRL 462
            IIR  P         ++      + + L D           DG+ YL ++ T +++  + 
Sbjct: 1622 IIRNHPKDTDIEFRKIREFTKGEEKQGLTDARFRLESLWTRDGSTYLRDLTTDSLIHGQE 1681

Query: 463  ARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVE 522
             R +   +D      ++L +   +  +I +     +      +   +D+     +T    
Sbjct: 1682 DRASNTSKDKGYFRFDNLVVGNYKLTEIQAPYGYQVTDSYWRIEVREDKNGDLVKTVYEV 1741

Query: 523  GLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFI 582
                 E      +E  V  +++     R     ++      K      +  +     +  
Sbjct: 1742 KKDGTEVNIDPNKEQSVYELTNK---PRKIDISFKKYLGELKKDGQGNIIKDKDGKPIVD 1798

Query: 583  VSTHTSVLFFSSLGF--VYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDE 640
                T  L     G    +              +  +  N   +  G        F  + 
Sbjct: 1799 KEEATRKLT-GKDGKPVSFDLYNSDFYGAIIGEKDDSG-NFKPIQTGITQDEKGLFHLNG 1856

Query: 641  SSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTT 700
              +   Y++  T       N    +                D+   +    +   +    
Sbjct: 1857 LEFGKYYILRET-------NPPEGY----------------DKANDILLKVEAEAVANVG 1893

Query: 701  KLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISMAIVLHADA----DYDERICYMK 756
            ++   VR P S   +       GV  I   +G+Q+ S  I     A    D D ++    
Sbjct: 1894 EMKVIVRDPNSNTELGDHAIFKGV--IDFKEGEQLGSFTIRKTGTALSYIDKDGKLVENP 1951

Query: 757  HMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFILTVSEKGFGKRTSSYD 816
             +    R          S           ++E  Q++      IL ++E+   KR +  D
Sbjct: 1952 QIDVGLRRAYFRLYTANSSFEIEKNPAGYAKEYIQKVSPGVPIILYLTEED-AKRMTEAD 2010

Query: 817  FRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQIILVSDKGTLIRV 865
                 R+  GI        N+ G +              +   G   R+
Sbjct: 2011 -----RNKMGIAGYKNFPTNDGGKISYA-----------IDSNGKRFRI 2043


>gi|289809152|ref|ZP_06539781.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar
           Typhi str. AG3]
          Length = 34

 Score = 41.3 bits (95), Expect = 0.72,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 189 NIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIR 221
           NIP HNL EV++GC+A IDN DI ++ LME I 
Sbjct: 2   NIPPHNLTEVINGCLAYIDNEDISIEGLMEHIP 34


>gi|37542711|gb|AAL47189.1| gyrase A [Mycobacterium marinum]
          Length = 122

 Score = 41.3 bits (95), Expect = 0.76,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 585 THTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALI-NILSLNQGERITTIMPFPEDESSW 643
           TH   +  ++ G VY+ +    P      R  A     ++    ERI  ++     E   
Sbjct: 1   THDW-ICLTTQGRVYRARPTNCP--RRTHRAWAARGEPVAFQPEERIAQVIQIKSYE--- 54

Query: 644 NNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLG 703
           +  Y+V A + G     +++DF      G + +KL   DE++    C+ E D+  + +  
Sbjct: 55  DAPYLVLAPRTGG-EEIQVTDFDSNRSGGIVGIKLRGEDELVGAGMCSSEEDLWWSRRTD 113

Query: 704 QCVRFPISA 712
             +RF  + 
Sbjct: 114 SRLRFSATE 122


>gi|242064106|ref|XP_002453342.1| hypothetical protein SORBIDRAFT_04g004160 [Sorghum bicolor]
 gi|241933173|gb|EES06318.1| hypothetical protein SORBIDRAFT_04g004160 [Sorghum bicolor]
          Length = 1354

 Score = 41.3 bits (95), Expect = 0.81,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 63/201 (31%), Gaps = 15/201 (7%)

Query: 677  KLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVI 736
             L  ++++L          I           +   A+     R S+    + L    Q +
Sbjct: 866  NLPEKEKLLLQMLRQPTRTIECIKGEPSIEEYYEVALEAEKHRESITQAIMQLPNSQQFL 925

Query: 737  --SMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELK 794
                 +V+ +D D D  +  +    +                +          E+     
Sbjct: 926  TPGRLVVVKSDCDDDHLLGVILKNPSPMLKKYVVLVLTGDCSSSVLAPEFNKNEKGPGDF 985

Query: 795  LKEQFILTVSEKGFGKRTSSYDF--RISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQ 852
               QFI        GKR    ++   + +R G G+    +    +   +       +N +
Sbjct: 986  QGGQFIAL-----KGKRGMDDEYYSSVISRKGSGVITIKLPYKGDASGMGFEVRAIENKE 1040

Query: 853  IILV-SDKGTLIRVPVNEIRI 872
            I+++ + K     + V+++R+
Sbjct: 1041 IMIICTSK-----IKVDQVRL 1056


>gi|198422077|ref|XP_002128175.1| PREDICTED: similar to RAB6 interacting protein 2 [Ciona
           intestinalis]
          Length = 840

 Score = 40.9 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 47/373 (12%), Positives = 117/373 (31%), Gaps = 38/373 (10%)

Query: 195 LGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVILGRTGIKN-----AYATGRGSIV 249
           L E  D  + + ++   D   L  +    D     +++    I++         G     
Sbjct: 375 LDEKQDYLLRLQEDKSCDASELSHLRDTLDVKDRKILVLHKKIESLSEVVRERDGMLEEK 434

Query: 250 IRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAE---LVREKRIVDIADLRDESDRQ 306
            R +  +E+ S   +  + T      +K  ++E +     L+R++   + ADL  +    
Sbjct: 435 KRALVALEEDSCTSDSALTTMEEALADKDKIVEALQHEISLLRQQLRDESADLNQQLKNA 494

Query: 307 GYRVVIELKRGASADVILNQLYRY-TSLQSLFSVNMVALNGYKPE-RFTLIGILKAFVAF 364
             ++    +     +  +++L    TSL S        +   +   +       +     
Sbjct: 495 EQQLDCSRRDVTERETSISELQEQATSLASSIVKKDSFIKQLEINIQKHTEDFNRLQNQH 554

Query: 365 REEVVVRRTK-----YLLNKARDRAHVLVGLAIAV------ANLDEVVRIIRFSPNPETA 413
           ++      T+     + L        V   +  A         L  +++      + +  
Sbjct: 555 KKAQQQAMTETTKEEFNLKIRNLEIEVQSKVDEASRCQGDLDRLLGILKETENEKHSKDE 614

Query: 414 RRELMQRSWNASDIK------DLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTG 467
           +   M++      +K      ++I+           D   YLSE+QT+            
Sbjct: 615 KISAMEKKHKEQTMKIKSLQTEMIEEARRKGAAQDRDVAKYLSEMQTKD----------- 663

Query: 468 LGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDM 527
              +++   L        E   +L+       + + +L  +  E    ++     G+   
Sbjct: 664 ERVEELEEALRESVSITAEREVVLAGVEEGRRVAENQLAELVAEFTKTKQVLEETGMRVA 723

Query: 528 EDEDCIVREDMVV 540
             E  +  +D ++
Sbjct: 724 SMEVMVESKDRML 736


>gi|75992958|gb|ABA33682.1| GyrA-like protein [Haemophilus parasuis]
          Length = 52

 Score = 40.9 bits (94), Expect = 0.87,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 807 GFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVNDNDQII 854
           G+ K     D+    R GKG  AT + + + I  L      N +D I+
Sbjct: 6   GYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKL---LVANTHDTIL 50


>gi|308189750|ref|YP_003922681.1| hypothetical protein MFE_01830 [Mycoplasma fermentans JER]
 gi|307624492|gb|ADN68797.1| conserved hypothetical protein [Mycoplasma fermentans JER]
          Length = 3317

 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 50/414 (12%), Positives = 117/414 (28%), Gaps = 22/414 (5%)

Query: 280  MLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSV 339
               +  EL+ ++          +++      +I    G       N + ++    S   +
Sbjct: 816  WNTEFTELISKRIKGLFTPFITKNETLPENYLILGNHGDYPLTKFNIIEKFDQYDSKNIL 875

Query: 340  NMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDE 399
              + +        T           +E      T+         A      +   A   +
Sbjct: 876  EYIDIVYNGLSTATNPH-------HKEGYKKYYTRIEEKIKAGDATAFNLYSQLKALQVK 928

Query: 400  VVRIIRFSPNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILE 459
               II    +P+  +  L  +  + +   D +    + +Y   ++ + Y+S  Q   + +
Sbjct: 929  RFEIIEKQNDPKEDKTLLQAQLLSITYQFDQLKKQWEETYNKVANKSWYISTNQLILLCK 988

Query: 460  LRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTR 519
            L L   T     ++   L +   + K        R   L   K   ++       P    
Sbjct: 989  LDLNLQTAKKIAELHQSLINEYKQ-KRLELETIERKIELENFKILYMTQTANFADPVVIE 1047

Query: 520  IVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTD 579
                +L   +E+               Y+ +V    ++A    GK    ++     +   
Sbjct: 1048 QYNRILHKFEENINTHMPT--------YIAKVVDEQFKAADLKGKQVLEILKNPTTYNQV 1099

Query: 580  LFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPED 639
               +S       +               +   Q    +  N+ +LN+         +   
Sbjct: 1100 SIFISEIEKTNRYFKDFKNKVLLSQAELVAKIQVEANSDENLYNLNKKFWEDLKAEYTPL 1159

Query: 640  ESSWNNLYVVFAT---KHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETC 690
               +N+ + V  T   +  N ++  ++   +       A      DE+  V T 
Sbjct: 1160 IKPYNDAFEVDMTYEIEDNNNKKISVTKKAKERMFDSYA---QEEDELNQVATH 1210


>gi|71899875|ref|ZP_00682024.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
 gi|71730392|gb|EAO32474.1| DNA gyrase C-terminal repeat, beta-propeller [Xylella fastidiosa
           Ann-1]
          Length = 156

 Score = 40.9 bits (94), Expect = 0.94,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 790 CQELKLKEQFILTVSEKGFGKRTSSYDFRISNRSGKGIRATDVSKINEIGALVAVFPVND 849
                  + F+L  S  G+G  T      ++ R+  G     ++   ++  L  +  V  
Sbjct: 1   MASADNDKLFVL-ASSHGYGFITRFE--NLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQ- 56

Query: 850 NDQIILVSDKGTLIRVPVNEIRIASRATKGVVIFSTAK----DERVVSVERIRES 900
           +D+I+ V+  G L+ +  +E+    +  KG  +    K     ER+V+V  +  S
Sbjct: 57  HDRIVAVTSAGNLLAIAASELPELDK-GKGNKLIDIPKTKLATERLVAVIAVASS 110


>gi|20142122|dbj|BAB88924.1| gyrase A [Bacillus cereus]
          Length = 50

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNP 410
           +V  R  VV RRT + L K +DR H++ GL +A+ ++DEV+ IIR S + 
Sbjct: 1   YVDHRLTVVRRRTAHRLGKRQDRLHLVEGLLLALVDIDEVIEIIRTSDDA 50


>gi|297829356|ref|XP_002882560.1| hypothetical protein ARALYDRAFT_896967 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328400|gb|EFH58819.1| hypothetical protein ARALYDRAFT_896967 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 93

 Score = 40.9 bits (94), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 159 GSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVD 200
           GS   P+      P +LVNG  GI  G    IP +N    +D
Sbjct: 2   GSMFMPI-----IPTILVNGSQGIGAGWNNFIPNYNPMVPMD 38


>gi|28209858|ref|NP_780802.1| hypothetical protein CTC00086 [Clostridium tetani E88]
 gi|75543318|sp|Q899T2|Y086_CLOTE RecName: Full=UPF0182 protein CTC_00086
 gi|28202293|gb|AAO34739.1| conserved membrane protein [Clostridium tetani E88]
          Length = 887

 Score = 40.5 bits (93), Expect = 1.2,   Method: Composition-based stats.
 Identities = 53/412 (12%), Positives = 107/412 (25%), Gaps = 23/412 (5%)

Query: 408 PNPETARRELMQRSWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTR--AILELRLARL 465
             P+ A  ++ +    +    +L++ I         D    LS   TR   IL  R    
Sbjct: 476 DYPQGANNKITEYDGKSGIKMNLLNKII--FAINKKDLNFLLSRDVTRESRILINRNIVE 533

Query: 466 TGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLL 525
                       N   + I +        +             +D        +++   +
Sbjct: 534 RAKKIAPFLTYDNDPHLVIHDNKLYWVIDAYTTSNKYPYSQPYEDINYIRNSAKVIIDAI 593

Query: 526 DMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVST 585
           D +    I  ++  + VS+   + +     Y     G K               +F    
Sbjct: 594 DGDINFYITNKNDPIIVSYS-KIFKNLFKDYSKIPEGIKEHLKYPEDIFKIQCKVFEKYH 652

Query: 586 HTSVLFFSSLGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNN 645
            T  + F   G    E        +          +      + +  ++          N
Sbjct: 653 MTDTIAFL-NGDDLWELSQDEKTMNTDKATNESPYVFMKLPNDNLEEMILLGYFNMKQRN 711

Query: 646 LYVVF----ATKHGNVRRNKLSDFIQINRSGKIAMKLD-SRDEILSVETC-TQENDILLT 699
                     T     +       I          K    +D ++S E       +    
Sbjct: 712 TMSSMLAARMTSDNYGKLIMYRFPIHKTIYSPYFFKQKIKQDPLISKELSLWNIGEGGAK 771

Query: 700 TKLGQCVRFPISA----IRVFAGRNSVG------VRGISLAKGDQVISMAIVLHADADYD 749
            + G  +  PI+     +     R + G      V+GI L+ GD+++    +  A     
Sbjct: 772 VQFGDTIILPINNSLLYVESMYLR-AKGKNSAPEVKGIILSYGDKIVLDTTMDEALTKLF 830

Query: 750 ERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQFIL 801
            +    K  + +   I+   E           + +    +  E   K   IL
Sbjct: 831 TKKEEGKEENIEDNKINSIKEAKVIYDKAIKAQRDGDWAKYGEYIKKLGNIL 882


>gi|153004647|ref|YP_001378972.1| peptidyl-dipeptidase A [Anaeromyxobacter sp. Fw109-5]
 gi|152028220|gb|ABS25988.1| Peptidyl-dipeptidase A [Anaeromyxobacter sp. Fw109-5]
          Length = 622

 Score = 40.5 bits (93), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 101 AQDWSLRLLLIEGQGNFGSVDGDPPAAER--YTECRLQKAAHFLLDDLGKD 149
           AQDWS    L+E     GS+D D  A +R  Y   R+ K        LG +
Sbjct: 290 AQDWSNLYPLVEPFKGVGSLDVD-AALKRQKYDAARMVKLGEAFFTSLGLE 339


>gi|169842286|ref|ZP_02875391.1| hypothetical protein cdivTM_34289 [candidate division TM7
           single-cell isolate TM7a]
          Length = 25

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 135 LQKAAHFLLDDLGKDTVDFRPNYDG 159
           + K    LL D+GKDT+D+R N+D 
Sbjct: 1   MAKITEELLADIGKDTIDYRKNFDE 25


>gi|242062822|ref|XP_002452700.1| hypothetical protein SORBIDRAFT_04g030886 [Sorghum bicolor]
 gi|241932531|gb|EES05676.1| hypothetical protein SORBIDRAFT_04g030886 [Sorghum bicolor]
          Length = 97

 Score = 39.8 bits (91), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 153 FRPNY------DGSFQEPVVLCARYPNVLVNGGGGIAVGMATNIPTHNLGEVVDGCVAVI 206
           F+ N+      DG   EP       P VLVNG  G     +T +  +N  ++V     ++
Sbjct: 20  FKRNFVKEANRDGKSIEPAWYLVILPMVLVNGIEGSGNRWSTYVSEYNPRDIVANLRGLL 79

Query: 207 DNPDIDLDALMEIIRG 222
           +   + +     +  G
Sbjct: 80  NGELMSVLNPCTLGTG 95


>gi|301121216|ref|XP_002908335.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262103366|gb|EEY61418.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 456

 Score = 39.4 bits (90), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 57/204 (27%), Gaps = 17/204 (8%)

Query: 515 PRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDE 574
            +RT    G      ED    E  +   +   +        +       K  S     D+
Sbjct: 188 MKRTISSTGRAAANREDAQTLEKALFFRTQAMWEDIPIPLQF-------KICSTDDQHDD 240

Query: 575 DFVTDLFIVSTHTSVLFFSS--LGFVYKEKVWRLPIGSPQARGKALINILSLNQGERITT 632
             +T L       +++ F++   G       +  P G       A  +++       I  
Sbjct: 241 GTLTQLLQTFGDQTMVLFNAVLTGQRVIMLGYNRPAGEVCNFVLATSSLVCPPLFGLIHR 300

Query: 633 IMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEILSVETCTQ 692
             P+           + F +  G +       F        +   + + +  +S     +
Sbjct: 301 QYPYANLTD------LGFLSTPGYIAGVTNPMFKTKREWWDVLCDISTGEVFVSAPVEKE 354

Query: 693 ENDILLTTK--LGQCVRFPISAIR 714
           ++D+   +    G    +    +R
Sbjct: 355 DHDVSDRSFVLDGVAAGYDEEWVR 378


>gi|145526432|ref|XP_001449027.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416593|emb|CAK81630.1| unnamed protein product [Paramecium tetraurelia]
          Length = 647

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 96/362 (26%), Gaps = 36/362 (9%)

Query: 363 AFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQRSW 422
            FR+  +   T +L  +          + I  A   + + II      +       +   
Sbjct: 249 KFRKTYITHITNHLDKEKESYGFTRCKVLILTAFKGDAISIINQLIQTDKEVVNKERYEN 308

Query: 423 NASDIKDLIDLIDDSSYTIGSDGTMYL--SEVQTRAILELRLARLTGLGRDDIRNELNSL 480
              D + L +            G + L  +  ++  I+   L     +G  D ++     
Sbjct: 309 EFCDEERLEEDDFRIGIQFSRQGYVKLHANFDKSDIIVTSTLGMRLIIGTQDQKHRETHF 368

Query: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVV 540
              I+  +   +S   +      E +           T ++    ++  E   +R     
Sbjct: 369 LSSIEILVIDRASSIYMQNWSYLEDILEA--------TNLLPNHKNITSELSTIRPYCFE 420

Query: 541 TVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYK 600
            +S       V    Y  +    + +     +       ++        + F        
Sbjct: 421 NLSKFYRQNIVYTDHYFQELNFLRKQYFTNYK-GCISNKIYYNQLFQKSVNFQQEFRQID 479

Query: 601 EKVWRLPIGSPQARGKALINILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRN 660
                  I     + K L N +  N+G +    + F +        Y  F T  G+ +R 
Sbjct: 480 CSNTEQQIEQRFNQFKKLWNDIENNKGSQFKKTVIFVQ-------SYFDFVTLKGHFKRI 532

Query: 661 KLSD-----FIQINRSGKIAMKLDSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRV 715
             +      + + ++   I  K                  I       +   F I  +R 
Sbjct: 533 NSNCECVSEYTKRSKVQSIISKFKDG-------------RIQYIMMTERAYFFEIIQLRS 579

Query: 716 FA 717
             
Sbjct: 580 MK 581


>gi|253582978|ref|ZP_04860196.1| cobalamin biosynthesis protein [Fusobacterium varium ATCC 27725]
 gi|251835184|gb|EES63727.1| cobalamin biosynthesis protein [Fusobacterium varium ATCC 27725]
          Length = 1245

 Score = 39.0 bits (89), Expect = 4.0,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 681  RDEILSVETCTQE---NDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVIS 737
             D+++      +     +I +    G+ ++     I        +GVR I L  GD+VI 
Sbjct: 868  GDKLIERYIQDEGKIPQNIAMLIYGGETMKTNGDDIAEALYL--MGVRPIWLNNGDRVIG 925

Query: 738  MAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKE 797
            + ++ + +         ++     R         +    N  S      +       + E
Sbjct: 926  LEVIPYEELKRPRIDVTLRITGLFRDTFPILIRLLEEAVNLVSQLDESDDINYIRKNMNE 985

Query: 798  QFILTVSEKGFGKRTSSY 815
            + +  + E+G+ K + + 
Sbjct: 986  EIVQLL-EEGY-KLSEAE 1001


>gi|113913515|gb|ABI48901.1| RAD50 [Saccharomyces pastorianus]
          Length = 1312

 Score = 38.6 bits (88), Expect = 4.9,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 92/333 (27%), Gaps = 23/333 (6%)

Query: 277 KAAMLEKIAELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRY----TS 332
           K    ++   L        +   ++ S    ++V I      +A+    ++       + 
Sbjct: 369 KEDFQQRFQHLSDNNNSDMVKTNQEMS---QFQVRIFQDLSNTAEQFAKEILIKETNVSE 425

Query: 333 LQSLFSVNMVALNGYKPERFTLIGILKAFVAFREEVVVRRTKYLLNKARDRAHVLVGLAI 392
           L    +V+   L   K +R  LI   +        +    T+  LN   +  +   G   
Sbjct: 426 LVKSITVDSQNLEYNKKDRTKLIHDTEELTEEVRLLKNLSTQDDLNHELENLNTYKGKLQ 485

Query: 393 AVANLDEVVRI---IRFSPNPETARRELMQRSWNA-------SDIKDLIDLIDDSSYTIG 442
           A  N + + ++   I    N        +++  +        +D+   + L+  S     
Sbjct: 486 AWENDNTIPKLTQKIEEKNNEMIILENQIEKFQDRIMKTNQQADLYAKLGLVRKSLNVKS 545

Query: 443 SDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSLGIEIKECLDILSSRSRLLGIIK 502
            D    + ++Q    +                 E++   + I    +I  +   +    +
Sbjct: 546 GDLQNIIEKLQKDPKIRQIF--PITQDFQKSDLEIDFQKLFINMQKNIAVNNKEIHEFDR 603

Query: 503 QELLSVKDELDTPRRTRIVEGLLDMEDEDCIVREDMVVTVSHLGYVKRVPLSVYRAQRRG 562
           +   ++ +     +             +          T+     V       Y+     
Sbjct: 604 KYTNALYNSNTIEKDLHDNLHSQQKVIQLLNENLPEDCTIDEYNDVLEETELSYKTALEN 663

Query: 563 GKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSL 595
            K    +     +F      ++   S  +  S 
Sbjct: 664 LK----MHQTTLEFNRKALEIAERDSCCYLCSR 692


>gi|94482777|gb|ABF22396.1| Tax1 binding protein 1 [Takifugu rubripes]
          Length = 854

 Score = 37.8 bits (86), Expect = 8.5,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 22/257 (8%)

Query: 559 QRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVLFFSSLGFVYKEKVWRLPIGSPQARGKAL 618
           Q  G        +     +T          V  F     V                 +  
Sbjct: 12  QNVGKSYLPHAALECHYTLTQFIRPHPKDWVGIFK----VGWSTARDYYTFLWSPLPENY 67

Query: 619 INILSLNQGERITTIMPFPEDESSWNNLYVVFATKHGNVRRNKLSDFIQINRSGKIAMKL 678
           +    +++           +D   +   YV   T  G +R    S   Q   +   A   
Sbjct: 68  VEGTGVHRTVVFQGYYVPNDDGEFYQFCYV---THKGEIR--GASTPFQFRANSPSA--- 119

Query: 679 DSRDEILSVETCTQENDILLTTKLGQCVRFPISAIRVFAGRNSVGVRGISLAKGDQVISM 738
              DE+L+VE     + +++TTK G    F    +          V+ ++L + ++    
Sbjct: 120 ---DELLTVEDECNSDILVVTTKAG----FLEQKVEEIQREKEELVKKVALLEQEK---E 169

Query: 739 AIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNISEERCQELKLKEQ 798
            +    +    E     +  +  RR          +L+ +        EE    +   E+
Sbjct: 170 QLEAEKENLKKECEEEKETCAQLRRENQEVQSSSQALQEEKEEVKRRLEEANARVVQLEE 229

Query: 799 FILTVSEKGFGKRTSSY 815
            ++ V++KG  K T   
Sbjct: 230 DLIGVTQKGLQKETELD 246


>gi|253582969|ref|ZP_04860187.1| cobalamin biosynthesis protein [Fusobacterium varium ATCC 27725]
 gi|251835175|gb|EES63718.1| cobalamin biosynthesis protein [Fusobacterium varium ATCC 27725]
          Length = 1246

 Score = 37.8 bits (86), Expect = 9.3,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 669 NRSGKIAMKLDSRDEILSVETCTQEN---DILLTTKLGQCVRFPISAIRVFAGRNSVGVR 725
             S K+ +KL   DE++      +      I +    G  ++     I        +GVR
Sbjct: 859 RASWKVGIKLA--DELMKRYIQDEGELPKSIAMILYSGDTIKTNGDDIAEALYL--MGVR 914

Query: 726 GISLAKGDQVISMAIVLHADADYDERICYMKHMSAQRRLISGDTEEITSLKNDSSVEGNI 785
            I L  GD+VI + ++ + +         ++     R       + +    N  S     
Sbjct: 915 PIWLNNGDRVIGLEVIPYEELKRPRIDVTLRISGLFRDTFPTLIKLLEDAVNIVSQLDES 974

Query: 786 SEERCQELKLKEQ 798
            E    +  LK+ 
Sbjct: 975 DEINYIKKNLKDD 987


>gi|281338490|gb|EFB14074.1| hypothetical protein PANDA_011014 [Ailuropoda melanoleuca]
          Length = 189

 Score = 37.5 bits (85), Expect = 9.7,   Method: Composition-based stats.
 Identities = 18/172 (10%), Positives = 37/172 (21%), Gaps = 7/172 (4%)

Query: 227 TGAVILGRTGIKNAYATGRGSIVIRGVSHIEKTSGDREQIV--VTEIPYQVNKAAMLEKI 284
           T       TG+  AY      +  +  +     +     +        +           
Sbjct: 15  TSTHRCTHTGMHTAYTQAHTQVHTQAHTGTHTCTHRCTHMHRQAHSGAHMGTHRCTHRYA 74

Query: 285 AELVREKRIVDIADLRDESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVAL 344
                         +   S   G    I               ++YT + +    +M   
Sbjct: 75  QTQAHTGTHRHAHSIYP-SSHTGIHTSIHRHMHRC---THRHAHKYTGMHTQRCTHMHRQ 130

Query: 345 NGYKPERFTLIGILKAFVAFRE-EVVVRRTKYLLNKARDRAHVLVGLAIAVA 395
                      G        +  +V   R  +   +A  +AH  V   +   
Sbjct: 131 AHTGAHTGMHTGAHTGTHRHKHTQVHTHRYTHRCTQACTQAHTQVHTQVHTD 182


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.311    0.124    0.371 

Lambda     K      H
   0.267   0.0380    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,100,538,368
Number of Sequences: 13984884
Number of extensions: 450081184
Number of successful extensions: 1060900
Number of sequences better than 10.0: 6871
Number of HSP's better than 10.0 without gapping: 6793
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 987323
Number of HSP's gapped (non-prelim): 16808
length of query: 910
length of database: 4,792,584,752
effective HSP length: 149
effective length of query: 761
effective length of database: 2,708,837,036
effective search space: 2061424984396
effective search space used: 2061424984396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 86 (37.8 bits)